Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold282
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1446459
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
File 9 of 10
Found at i:1234007 original size:52 final size:52
Alignment explanation
Indices: 1233951--1234261 Score: 142
Period size: 52 Copynumber: 5.9 Consensus size: 52
1233941 CGATTGTGAA
*
1233951 AAATTGATGTTTTTGGAAATAAAATCGGAGTTGGAGTATCCCCGATTAAAGG
1 AAATTGATGTTTTTGGAAATAAAACCGGAGTTGGAGTATCCCCGATTAAAGG
* * * * * **
1234003 AAATTTGGTG-CTTTGAAAATAAAACTGGGGTTGGAGTATCCCCGATT-GTGG
1 AAA-TTGATGTTTTTGGAAATAAAACCGGAGTTGGAGTATCCCCGATTAAAGG
* * * * * * *
1234054 AAAATT-A-GTGTTTTAGAAATAAAGCCAGCGTTAGAGTATCCCCTCAGAGGTAACGG
1 -AAATTGATGT-TTTTGGAAATAAAACCGGAGTTGGAGTAT-CCC-C-GA-TTAAAGG
** *** * * *
1234110 -GGTTGGA-GTATCCCGG--ATGAAATAAC-GAGGTTGGAGTATCCTCGATTGTGAA--
1 AAATT-GATGT-TTTTGGAAAT-AAA-ACCGGA-GTTGGAGTATCCCCGA-T-TAAAGG
* *
1234162 AAATTGGTGTTTTTGGAAATAAAATCGGAGTTGGAGTATCCCCGATTAAAGG
1 AAATTGATGTTTTTGGAAATAAAACCGGAGTTGGAGTATCCCCGATTAAAGG
* ** *
1234214 AAACTTGGTG-TTTTAAAAATAAAACCGGGGTTGGAGTATCCCCGATTA
1 AAA-TTGATGTTTTTGGAAATAAAACCGGAGTTGGAGTATCCCCGATTA
1234262 TGAACAATTG
Statistics
Matches: 187, Mismatches: 49, Indels: 46
0.66 0.17 0.16
Matches are distributed among these distances:
49 1 0.01
50 3 0.02
51 26 0.14
52 99 0.53
53 23 0.12
54 11 0.06
55 7 0.04
56 17 0.09
ACGTcount: A:0.32, C:0.13, G:0.27, T:0.29
Consensus pattern (52 bp):
AAATTGATGTTTTTGGAAATAAAACCGGAGTTGGAGTATCCCCGATTAAAGG
Found at i:1234182 original size:211 final size:211
Alignment explanation
Indices: 1233817--1234264 Score: 754
Period size: 211 Copynumber: 2.1 Consensus size: 211
1233807 TCGGAAATAA
* * * *
1233817 CGGGGTTGGAGTATCCCCAATTATGAGAAATTAATATTTTAGAAATAAAGCCGGGGTTGGAGTAT
1 CGGGGTTGGAGTATCCCCGATTATGAGAAATTAATATTTTAGAAATAAAGCCAGCGTTAGAGTAT
*
1233882 CCCCTCAGAGGTAACGGGGTTGGAGTATCCCCGATGAATTAACGAGGTTGGAGTATCCTCGATTG
66 CCCCTCAGAGGTAACGGGGTTGGAGTATCCCCGATGAAATAACGAGGTTGGAGTATCCTCGATTG
*
1233947 TGAAAAATTGATGTTTTTGGAAATAAAATCGGAGTTGGAGTATCCCCGATTAAAGGAAATTTGGT
131 TGAAAAATTGATGTTTTTGGAAATAAAATCGGAGTTGGAGTATCCCCGATTAAAGGAAACTTGGT
*
1234012 GCTTTGAAAATAAAAC
196 GCTTTAAAAATAAAAC
* * * *
1234028 TGGGGTTGGAGTATCCCCGATTGTG-GAAAATTAGTGTTTTAGAAATAAAGCCAGCGTTAGAGTA
1 CGGGGTTGGAGTATCCCCGATTATGAG-AAATTAATATTTTAGAAATAAAGCCAGCGTTAGAGTA
*
1234092 TCCCCTCAGAGGTAACGGGGTTGGAGTATCCCGGATGAAATAACGAGGTTGGAGTATCCTCGATT
65 TCCCCTCAGAGGTAACGGGGTTGGAGTATCCCCGATGAAATAACGAGGTTGGAGTATCCTCGATT
*
1234157 GTGAAAAATTGGTGTTTTTGGAAATAAAATCGGAGTTGGAGTATCCCCGATTAAAGGAAACTTGG
130 GTGAAAAATTGATGTTTTTGGAAATAAAATCGGAGTTGGAGTATCCCCGATTAAAGGAAACTTGG
*
1234222 TGTTTTAAAAATAAAAC
195 TGCTTTAAAAATAAAAC
1234239 CGGGGTTGGAGTATCCCCGATTATGA
1 CGGGGTTGGAGTATCCCCGATTATGA
1234265 ACAATTGAGA
Statistics
Matches: 219, Mismatches: 16, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
210 1 0.00
211 218 1.00
ACGTcount: A:0.31, C:0.13, G:0.27, T:0.28
Consensus pattern (211 bp):
CGGGGTTGGAGTATCCCCGATTATGAGAAATTAATATTTTAGAAATAAAGCCAGCGTTAGAGTAT
CCCCTCAGAGGTAACGGGGTTGGAGTATCCCCGATGAAATAACGAGGTTGGAGTATCCTCGATTG
TGAAAAATTGATGTTTTTGGAAATAAAATCGGAGTTGGAGTATCCCCGATTAAAGGAAACTTGGT
GCTTTAAAAATAAAAC
Found at i:1234271 original size:104 final size:104
Alignment explanation
Indices: 1233927--1234271 Score: 354
Period size: 104 Copynumber: 3.3 Consensus size: 104
1233917 GAATTAACGA
* *
1233927 GGTTGGAGTATCCTCGATTGTGAAAAATTGATGTTTTTGGAAATAAAATCGGAGTTGGAGTATCC
1 GGTTGGAGTATCCCCGATTGTGAAAAATTGGTGTTTTTGGAAATAAAATCGGAGTTGGAGTATCC
* * * *
1233992 CCGATTAAAGGAAATTTGGTGCTTTGAAAATAAAACTGG
66 CCGATTAAAGGAAACTTGGTGTTTTAAAAATAAAACCGG
* * * ** * * *
1234031 GGTTGGAGTATCCCCGATTGTGGAAAATTAGTG-TTTTAGAAATAAAGCCAGCGTTAGAGTATCC
1 GGTTGGAGTATCCCCGATTGTGAAAAATTGGTGTTTTTGGAAATAAAATCGGAGTTGGAGTATCC
* * * * * ***** * *
1234095 CC--TCAGAGGTAACGGGGTTGGAGTATCCCGGATGAAATAACGA
66 CCGATTAAAGGAAAC----TTGGTGTTTTAAAAAT-AAA-ACCGG
*
1234138 GGTTGGAGTATCCTCGATTGTGAAAAATTGGTGTTTTTGGAAATAAAATCGGAGTTGGAGTATCC
1 GGTTGGAGTATCCCCGATTGTGAAAAATTGGTGTTTTTGGAAATAAAATCGGAGTTGGAGTATCC
1234203 CCGATTAAAGGAAACTTGGTGTTTTAAAAATAAAACCGG
66 CCGATTAAAGGAAACTTGGTGTTTTAAAAATAAAACCGG
* *
1234242 GGTTGGAGTATCCCCGATTATGAACAATTG
1 GGTTGGAGTATCCCCGATTGTGAAAAATTG
1234272 AGAAACTTAA
Statistics
Matches: 183, Mismatches: 49, Indels: 18
0.73 0.20 0.07
Matches are distributed among these distances:
101 7 0.04
103 27 0.15
104 59 0.32
105 11 0.06
106 12 0.07
107 32 0.17
108 27 0.15
110 8 0.04
ACGTcount: A:0.31, C:0.12, G:0.27, T:0.29
Consensus pattern (104 bp):
GGTTGGAGTATCCCCGATTGTGAAAAATTGGTGTTTTTGGAAATAAAATCGGAGTTGGAGTATCC
CCGATTAAAGGAAACTTGGTGTTTTAAAAATAAAACCGG
Found at i:1236576 original size:13 final size:13
Alignment explanation
Indices: 1236558--1236583 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1236548 CAAAGAATAG
1236558 ATGTATCGATACA
1 ATGTATCGATACA
1236571 ATGTATCGATACA
1 ATGTATCGATACA
1236584 CAGAAAAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1236580 original size:34 final size:33
Alignment explanation
Indices: 1236537--1236603 Score: 107
Period size: 34 Copynumber: 2.0 Consensus size: 33
1236527 AACTTCCTAG
*
1236537 ATGTATCGATACAAAGAATAGATGTATCGATACA
1 ATGTATCGATACAAAGAA-AAATGTATCGATACA
*
1236571 ATGTATCGATACACAGAAAAATGTATCGATACA
1 ATGTATCGATACAAAGAAAAATGTATCGATACA
1236604 TTTCCTTAGC
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
33 14 0.45
34 17 0.55
ACGTcount: A:0.45, C:0.13, G:0.16, T:0.25
Consensus pattern (33 bp):
ATGTATCGATACAAAGAAAAATGTATCGATACA
Found at i:1236645 original size:13 final size:13
Alignment explanation
Indices: 1236627--1236678 Score: 50
Period size: 13 Copynumber: 3.5 Consensus size: 13
1236617 AGCTTCCTAG
1236627 CGATACATTGTAT
1 CGATACATTGTAT
1236640 CGATACAAAACTTATGTAT
1 CGATAC---A-TT--GTAT
1236659 CGATACATTGTAT
1 CGATACATTGTAT
1236672 CGATACA
1 CGATACA
1236679 ACACTTATGT
Statistics
Matches: 33, Mismatches: 0, Indels: 12
0.73 0.00 0.27
Matches are distributed among these distances:
13 17 0.52
15 2 0.06
16 2 0.06
17 2 0.06
19 10 0.30
ACGTcount: A:0.37, C:0.17, G:0.13, T:0.33
Consensus pattern (13 bp):
CGATACATTGTAT
Found at i:1236659 original size:19 final size:19
Alignment explanation
Indices: 1236635--1236720 Score: 76
Period size: 19 Copynumber: 4.7 Consensus size: 19
1236625 AGCGATACAT
1236635 TGTATCGATACAAAACTTA
1 TGTATCGATACAAAACTTA
1236654 TGTATCGATAC---A--T-
1 TGTATCGATACAAAACTTA
*
1236667 TGTATCGATACAACACTTA
1 TGTATCGATACAAAACTTA
** *
1236686 TGTATCGATACATTTACTGAA
1 TGTATCGATACA-AAACT-TA
1236707 TGTATCGATACAAA
1 TGTATCGATACAAA
1236721 TTATTGGAAT
Statistics
Matches: 54, Mismatches: 5, Indels: 15
0.73 0.07 0.20
Matches are distributed among these distances:
13 11 0.20
14 1 0.02
16 2 0.04
18 1 0.02
19 23 0.43
20 3 0.06
21 13 0.24
ACGTcount: A:0.37, C:0.16, G:0.13, T:0.34
Consensus pattern (19 bp):
TGTATCGATACAAAACTTA
Found at i:1236668 original size:32 final size:32
Alignment explanation
Indices: 1236627--1236699 Score: 137
Period size: 32 Copynumber: 2.3 Consensus size: 32
1236617 AGCTTCCTAG
1236627 CGATACATTGTATCGATACAAAACTTATGTAT
1 CGATACATTGTATCGATACAAAACTTATGTAT
*
1236659 CGATACATTGTATCGATACAACACTTATGTAT
1 CGATACATTGTATCGATACAAAACTTATGTAT
1236691 CGATACATT
1 CGATACATT
1236700 TACTGAATGT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
32 40 1.00
ACGTcount: A:0.36, C:0.18, G:0.12, T:0.34
Consensus pattern (32 bp):
CGATACATTGTATCGATACAAAACTTATGTAT
Found at i:1237848 original size:33 final size:33
Alignment explanation
Indices: 1237790--1237856 Score: 89
Period size: 33 Copynumber: 2.0 Consensus size: 33
1237780 AAAGTTTCCA
***
1237790 AATGTATCGATACAAAGATCCATGTATCCATAC
1 AATGTATCGATACAAAGAAAAATGTATCCATAC
* *
1237823 AATGTATCGATACACAGAAAAATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCCATAC
1237856 A
1 A
1237857 TTTCCTTGGC
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.43, C:0.18, G:0.13, T:0.25
Consensus pattern (33 bp):
AATGTATCGATACAAAGAAAAATGTATCCATAC
Found at i:1237900 original size:19 final size:18
Alignment explanation
Indices: 1237876--1237943 Score: 83
Period size: 19 Copynumber: 3.9 Consensus size: 18
1237866 CAGTAGCTAA
1237876 TTATGTATCGATACAATAC
1 TTATGTATCGATACAA-AC
1237895 TTATGTATCGATAC--A-
1 TTATGTATCGATACAAAC
1237910 -T-TGTATCGATACAAAAC
1 TTATGTATCGATAC-AAAC
1237927 TTATGTATCGATACAAA
1 TTATGTATCGATACAAA
1237944 TTGTTGAATT
Statistics
Matches: 43, Mismatches: 0, Indels: 13
0.77 0.00 0.23
Matches are distributed among these distances:
13 11 0.26
14 1 0.02
16 2 0.05
18 4 0.09
19 25 0.58
ACGTcount: A:0.38, C:0.15, G:0.12, T:0.35
Consensus pattern (18 bp):
TTATGTATCGATACAAAC
Found at i:1237916 original size:13 final size:13
Alignment explanation
Indices: 1237898--1237922 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1237888 ACAATACTTA
1237898 TGTATCGATACAT
1 TGTATCGATACAT
1237911 TGTATCGATACA
1 TGTATCGATACA
1237923 AAACTTATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1237920 original size:32 final size:32
Alignment explanation
Indices: 1237879--1237941 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
1237869 TAGCTAATTA
*
1237879 TGTATCGATACAATACTTATGTATCGATACAT
1 TGTATCGATACAAAACTTATGTATCGATACAT
1237911 TGTATCGATACAAAACTTATGTATCGATACA
1 TGTATCGATACAAAACTTATGTATCGATACA
1237942 AATTGTTGAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.37, C:0.16, G:0.13, T:0.35
Consensus pattern (32 bp):
TGTATCGATACAAAACTTATGTATCGATACAT
Found at i:1238933 original size:60 final size:59
Alignment explanation
Indices: 1238665--1239216 Score: 534
Period size: 55 Copynumber: 9.6 Consensus size: 59
1238655 AATAAAGTGT
* * * * *
1238665 ATCCTGCTCTTTGAGGACTAAAAAGTGCCACCAACTCGTGTGGGCTTT----G-AAAGGT
1 ATCCTGCTCTTTGAGGACT-GAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAGC
* ** * *
1238720 GTCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGC-TT---CG-AAAAGG
1 ATCCTGCTCTTTGAGGACTG-AAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAGC
* ** * * * *
1238775 GTCCTGCTCTTT-AGGGACTGAAAAATGCCACCAGCTTGTGTGGGC-TT---CG-AAAGGG
1 ATCCTGCTCTTTGA-GGACTG-AAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAGC
* *
1238830 GTCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGC
1 ATCCTGCTCTTTGAGGACTG-AAGGTGCCACCAACTTGTGTGGGCTTT-AAAAGAAAAAGC
* *
1238891 ATCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGGGTGGGCTTTAAAAGAAAAGGC
1 ATCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAGC
* *
1238950 ATCCCGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAATGC
1 ATCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAGC
* * ** *
1239009 GTCCCGCTCTTTGAGGACTGAAAAATGCCACTAACTTGTGTGGGCTTTAAAAG-----GC
1 ATCCTGCTCTTTGAGGACTG-AAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAGC
* * *
1239064 GTCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGAAAAAGC
1 ATCCTGCTCTTTGAGGACTG-AAGGTGCCACCAACTTGTGTGGGCTTT-AAAAGAAAAAGC
* * * *
1239125 ATCTTGCTCTTTGAGGACTGAAGCTGCCACCAACTTGGGTGGGCTTTAAAAGAAAAGGC
1 ATCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAGC
* * *
1239184 GTCCCGCTCTTTGAGGACTGAAGGTGTCACCAA
1 ATCCTGCTCTTTGAGGACTGAAGGTGCCACCAA
1239217 GGCGTCCCGC
Statistics
Matches: 436, Mismatches: 44, Indels: 30
0.85 0.09 0.06
Matches are distributed among these distances:
54 3 0.01
55 181 0.42
56 6 0.01
59 124 0.28
60 81 0.19
61 41 0.09
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (59 bp):
ATCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAGC
Found at i:1239070 original size:234 final size:229
Alignment explanation
Indices: 1238665--1239216 Score: 801
Period size: 234 Copynumber: 2.4 Consensus size: 229
1238655 AATAAAGTGT
* * * * * *
1238665 ATCCTGCTCTTTGAGGACTAAAAAGTGCCACCAACTCGTGTGGGCTTT----G-AAAGGTGTCCT
1 ATCCTGCTCTTTGAGGACT-GAAGGTGCCACCAACTTGGGTGGGCTTTAAAAGAAAAGGCGTCCC
** * * *
1238725 GCTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTCGAAAAGGGTCCTGCTCTTTAGG
65 GCTCTTTGAGGACTG-AAGGTGCCACCAACTTGTGTGGGCTTAGAAAAGCGTCCCGCTCTTTAGG
* * *
1238790 GACTGAAAAATGCCACCAGCTTGTGTGGGCTTCGAAAGGGGTCCTGCTCTTTGGGGACTGAAAGG
129 GACTGAAAAATGCCACCAACTTGTGTGGGCTTCAAAAGGCGTCCTGCTCTTTGGGGACTGAAAGG
1238855 TGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGC
194 TGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGC
*
1238891 ATCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGGGTGGGCTTTAAAAGAAAAGGCATCCCG
1 ATCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGGGTGGGCTTTAAAAGAAAAGGCGTCCCG
1238956 CTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAATGCGTCCCGCTCTTT
66 CTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGC-TT---AGAAAA-GCGTCCCGCTCTTT
* *
1239021 -GAGGACTGAAAAATGCCACTAACTTGTGTGGGCTTTAAAAGGCGTCCTGCTCTTTGGGGACTGA
126 AG-GGACTGAAAAATGCCACCAACTTGTGTGGGCTTCAAAAGGCGTCCTGCTCTTTGGGGACTGA
*
1239085 AAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGAAAAAGC
190 AAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGC
* *
1239125 ATCTTGCTCTTTGAGGACTGAAGCTGCCACCAACTTGGGTGGGCTTTAAAAGAAAAGGCGTCCCG
1 ATCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGGGTGGGCTTTAAAAGAAAAGGCGTCCCG
*
1239190 CTCTTTGAGGACTGAAGGTGTCACCAA
66 CTCTTTGAGGACTGAAGGTGCCACCAA
1239217 GGCGTCCCGC
Statistics
Matches: 293, Mismatches: 22, Indels: 14
0.89 0.07 0.04
Matches are distributed among these distances:
225 24 0.08
226 19 0.06
229 23 0.08
230 25 0.09
233 6 0.02
234 196 0.67
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (229 bp):
ATCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGGGTGGGCTTTAAAAGAAAAGGCGTCCCG
CTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTAGAAAAGCGTCCCGCTCTTTAGGGA
CTGAAAAATGCCACCAACTTGTGTGGGCTTCAAAAGGCGTCCTGCTCTTTGGGGACTGAAAGGTG
CCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGC
Found at i:1243315 original size:13 final size:13
Alignment explanation
Indices: 1243297--1243322 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1243287 CAATTTTTTG
1243297 TGTATCGATACAT
1 TGTATCGATACAT
1243310 TGTATCGATACAT
1 TGTATCGATACAT
1243323 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1244061 original size:21 final size:21
Alignment explanation
Indices: 1244020--1244063 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
1244010 CTCCCCTTTA
* *
1244020 TCTCCCCCGTTTATTAATAAT
1 TCTCCCCCGTTAATCAATAAT
1244041 TCTCCCCC-TTAATCAAGTAAT
1 TCTCCCCCGTTAATCAA-TAAT
1244062 TC
1 TC
1244064 ATATCAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 6 0.30
21 14 0.70
ACGTcount: A:0.25, C:0.32, G:0.05, T:0.39
Consensus pattern (21 bp):
TCTCCCCCGTTAATCAATAAT
Found at i:1247971 original size:15 final size:15
Alignment explanation
Indices: 1247951--1247981 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
1247941 ATTTCGTTTG
*
1247951 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
1247966 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
1247981 G
1 G
1247982 GACATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Found at i:1249814 original size:21 final size:21
Alignment explanation
Indices: 1249785--1249829 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
1249775 AAGTTTTCAT
*
1249785 TTTTCTTAGCTAAC-TCATTA
1 TTTTCTTAGCCAACTTCATTA
*
1249805 TTTTCATTAGCCAACTTCTTTA
1 TTTTC-TTAGCCAACTTCATTA
1249827 TTT
1 TTT
1249830 CAATCTTGCA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 8 0.38
22 8 0.38
ACGTcount: A:0.22, C:0.20, G:0.04, T:0.53
Consensus pattern (21 bp):
TTTTCTTAGCCAACTTCATTA
Found at i:1252064 original size:13 final size:13
Alignment explanation
Indices: 1252046--1252071 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1252036 CAATTTTTTG
1252046 TGTATCGATACAT
1 TGTATCGATACAT
1252059 TGTATCGATACAT
1 TGTATCGATACAT
1252072 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1254636 original size:22 final size:22
Alignment explanation
Indices: 1254609--1254657 Score: 64
Period size: 22 Copynumber: 2.3 Consensus size: 22
1254599 TTTTCCCAAC
*
1254609 ACAAAAAAAAGAGAAAACAAAA
1 ACAAAAAAAAGAAAAAACAAAA
* *
1254631 ACAAAACAAAGAAAAAAGAAAA
1 ACAAAAAAAAGAAAAAACAAAA
1254653 A-AAAA
1 ACAAAA
1254658 GAGGAAAAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
21 4 0.17
22 20 0.83
ACGTcount: A:0.84, C:0.08, G:0.08, T:0.00
Consensus pattern (22 bp):
ACAAAAAAAAGAAAAAACAAAA
Found at i:1255646 original size:30 final size:30
Alignment explanation
Indices: 1255605--1255960 Score: 370
Period size: 30 Copynumber: 11.7 Consensus size: 30
1255595 TTCTCAATGC
*
1255605 CCACAACTCAGTGGCAT-TTTGTCCCAAAGT
1 CCACGACTCAGTGGCATCTTT-TCCCAAAGT
* *
1255635 CCATGACTCAGTGGCAT-TTTATCCCAATGT
1 CCACGACTCAGTGGCATCTTT-TCCCAAAGT
*
1255665 CCACGACTCAGTGGCAT-TTCTTTCCAAAGT
1 CCACGACTCAGTGGCATCTT-TTCCCAAAGT
*
1255695 CCACGACTTAGTGGCAATATCTTTT--CAAAGT
1 CCACGACTCAGTGGC---ATCTTTTCCCAAAGT
*
1255726 CCACGACTCAGTGGCAT-TTCATCCCAAAGT
1 CCACGACTCAGTGGCATCTT-TTCCCAAAGT
*
1255756 CCACGACTCAGTGGCATCTTTTCTTCAAAGT
1 CCACGACTCAGTGGCATCTTTTC-CCAAAGT
1255787 CCACGACTCAGTGGCATCTCTTT-CCAAAGT
1 CCACGACTCAGTGGCATCT-TTTCCCAAAGT
* * * * *
1255817 CCACAACTCAGTGGAAATCTCTTCTCAAAGC
1 CCACGACTCAGTGG-CATCTTTTCCCAAAGT
*
1255848 CCACGACTCAGTGGCAT-TTTGTCCTAAAGT
1 CCACGACTCAGTGGCATCTTT-TCCCAAAGT
* * *
1255878 CCATGACTTAGTGGCATCTTTTCTTCAAAGT
1 CCACGACTCAGTGGCATCTTTTC-CCAAAGT
* *
1255909 CCACGACTTAGGGGCATCTCTTT-CCAAAGT
1 CCACGACTCAGTGGCATCT-TTTCCCAAAGT
1255939 CCACGACTCAGTGGCATCTTTT
1 CCACGACTCAGTGGCATCTTTT
1255961 TTTCAAAGCC
Statistics
Matches: 276, Mismatches: 33, Indels: 35
0.80 0.10 0.10
Matches are distributed among these distances:
27 2 0.01
28 3 0.01
29 5 0.02
30 159 0.58
31 95 0.34
32 6 0.02
33 4 0.01
34 2 0.01
ACGTcount: A:0.25, C:0.29, G:0.17, T:0.29
Consensus pattern (30 bp):
CCACGACTCAGTGGCATCTTTTCCCAAAGT
Found at i:1255743 original size:61 final size:61
Alignment explanation
Indices: 1255605--1255973 Score: 426
Period size: 61 Copynumber: 6.1 Consensus size: 61
1255595 TTCTCAATGC
* * * * * *
1255605 CCACAACTCAGTGGCATTT-TGTCCCAAAGTCCATGACTCAGTGGCAT-T-TTATCCCAATGT
1 CCACGACTCAGTGGCATTTCT-TTCCAAAGTCCACGACTCAGTGGCATCTCTTCT-TCAAAGT
* *
1255665 CCACGACTCAGTGGCATTTCTTTCCAAAGTCCACGACTTAGTGGCAATATCTT-TTCAAAGT
1 CCACGACTCAGTGGCATTTCTTTCCAAAGTCCACGACTCAGTGGC-ATCTCTTCTTCAAAGT
* * *
1255726 CCACGACTCAGTGGCATTTCATCCCAAAGTCCACGACTCAGTGGCATCTTTTCTTCAAAGT
1 CCACGACTCAGTGGCATTTCTTTCCAAAGTCCACGACTCAGTGGCATCTCTTCTTCAAAGT
* * * *
1255787 CCACGACTCAGTGGCATCTCTTTCCAAAGTCCACAACTCAGTGGAAATCTCTTC-TCAAAGC
1 CCACGACTCAGTGGCATTTCTTTCCAAAGTCCACGACTCAGTGG-CATCTCTTCTTCAAAGT
* * * *
1255848 CCACGACTCAGTGGCATTT-TGTCCTAAAGTCCATGACTTAGTGGCATCTTTTCTTCAAAGT
1 CCACGACTCAGTGGCATTTCTTTCC-AAAGTCCACGACTCAGTGGCATCTCTTCTTCAAAGT
* * * * * *
1255909 CCACGACTTAGGGGCATCTCTTTCCAAAGTCCACGACTCAGTGGCATCTTTTTTTCAAAGC
1 CCACGACTCAGTGGCATTTCTTTCCAAAGTCCACGACTCAGTGGCATCTCTTCTTCAAAGT
1255970 CCAC
1 CCAC
1255974 ATCTCCGTGG
Statistics
Matches: 266, Mismatches: 34, Indels: 17
0.84 0.11 0.05
Matches are distributed among these distances:
60 55 0.21
61 196 0.74
62 13 0.05
63 2 0.01
ACGTcount: A:0.25, C:0.29, G:0.17, T:0.29
Consensus pattern (61 bp):
CCACGACTCAGTGGCATTTCTTTCCAAAGTCCACGACTCAGTGGCATCTCTTCTTCAAAGT
Found at i:1255830 original size:122 final size:122
Alignment explanation
Indices: 1255589--1255954 Score: 538
Period size: 122 Copynumber: 3.0 Consensus size: 122
1255579 CAATTCTTCA
* * *
1255589 AATACCTTCTCAATGCCCACAACTCAGTGGCATTTTGTCCCAAAGTCCATGACTCAGTGGCAT-T
1 AATATCTTCTCAAAGCCCACGACTCAGTGGCATTTTGTCCCAAAGTCCATGACTCAGTGGCATCT
* * * *
1255653 TTATC-CCAATGTCCACGACTCAGTGGCATTTCTTTCCAAAGTCCACGACTTAGTGGC
66 TT-TCTTCAAAGTCCACGACTCAGTGGCATCTCTTTCCAAAGTCCACGACTCAGTGGC
* * ** *
1255710 AATATCTTTTCAAAGTCCACGACTCAGTGGCATTTCATCCCAAAGTCCACGACTCAGTGGCATCT
1 AATATCTTCTCAAAGCCCACGACTCAGTGGCATTTTGTCCCAAAGTCCATGACTCAGTGGCATCT
* *
1255775 TTTCTTCAAAGTCCACGACTCAGTGGCATCTCTTTCCAAAGTCCACAACTCAGTGGA
66 TTTCTTCAAAGTCCACGACTCAGTGGCATCTCTTTCCAAAGTCCACGACTCAGTGGC
* * *
1255832 AATCTCTTCTCAAAGCCCACGACTCAGTGGCATTTTGTCCTAAAGTCCATGACTTAGTGGCATCT
1 AATATCTTCTCAAAGCCCACGACTCAGTGGCATTTTGTCCCAAAGTCCATGACTCAGTGGCATCT
* *
1255897 TTTCTTCAAAGTCCACGACTTAGGGGCATCTCTTTCCAAAGTCCACGACTCAGTGGC
66 TTTCTTCAAAGTCCACGACTCAGTGGCATCTCTTTCCAAAGTCCACGACTCAGTGGC
1255954 A
1 A
1255955 TCTTTTTTTC
Statistics
Matches: 217, Mismatches: 26, Indels: 3
0.88 0.11 0.01
Matches are distributed among these distances:
121 57 0.26
122 160 0.74
ACGTcount: A:0.25, C:0.29, G:0.17, T:0.29
Consensus pattern (122 bp):
AATATCTTCTCAAAGCCCACGACTCAGTGGCATTTTGTCCCAAAGTCCATGACTCAGTGGCATCT
TTTCTTCAAAGTCCACGACTCAGTGGCATCTCTTTCCAAAGTCCACGACTCAGTGGC
Found at i:1256005 original size:37 final size:35
Alignment explanation
Indices: 1255958--1256068 Score: 156
Period size: 37 Copynumber: 3.1 Consensus size: 35
1255948 AGTGGCATCT
1255958 TTTTTTCAAAGCCCACATCTCCGTGGCACCTTTTTC
1 TTTTTTCAAAGCCCACA-CTCCGTGGCACCTTTTTC
1255994 TTTTCTTCAAAGCCCACAACTCCGTGGCACCTTTTTC
1 TTTT-TTCAAAGCCCAC-ACTCCGTGGCACCTTTTTC
1256031 --TTTTCAAAGCCCACCACTCCGTGGCA-CTTTTTC
1 TTTTTTCAAAGCCCA-CACTCCGTGGCACCTTTTTC
*
1256064 CTTTT
1 TTTTT
1256069 AAGTCCACAA
Statistics
Matches: 70, Mismatches: 0, Indels: 11
0.86 0.00 0.14
Matches are distributed among these distances:
33 7 0.10
34 22 0.31
35 6 0.09
36 4 0.06
37 30 0.43
38 1 0.01
ACGTcount: A:0.17, C:0.34, G:0.11, T:0.38
Consensus pattern (35 bp):
TTTTTTCAAAGCCCACACTCCGTGGCACCTTTTTC
Found at i:1256042 original size:34 final size:33
Alignment explanation
Indices: 1255927--1256094 Score: 155
Period size: 37 Copynumber: 5.0 Consensus size: 33
1255917 TAGGGGCATC
* * * * *
1255927 TCTTTCCAAAGTCCACGACTCAGTGGCA-TCTT
1 TCTTTTCAAAGCCCACAACTCCGTGGCACTTTT
*
1255959 T-TTTTCAAAGCCCACATCTCCGTGGCACCTTTT
1 TCTTTTCAAAGCCCACAACTCCGTGGCA-CTTTT
1255992 TCTTTTCTTCAAAGCCCACAACTCCGTGGCACCTTTT
1 TC--TT-TTCAAAGCCCACAACTCCGTGGCA-CTTTT
*
1256029 TCTTTTCAAAGCCCACCACTCCGTGGCACTTTT
1 TCTTTTCAAAGCCCACAACTCCGTGGCACTTTT
* * * *
1256062 TCCTTTT--AAGTCCACAACTTCTTGGCATTTTT
1 T-CTTTTCAAAGCCCACAACTCCGTGGCACTTTT
1256094 T
1 T
1256095 TTCCTTTTTA
Statistics
Matches: 116, Mismatches: 13, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
31 21 0.18
32 22 0.19
33 10 0.09
34 28 0.24
35 2 0.02
36 2 0.02
37 31 0.27
ACGTcount: A:0.19, C:0.32, G:0.12, T:0.37
Consensus pattern (33 bp):
TCTTTTCAAAGCCCACAACTCCGTGGCACTTTT
Found at i:1256095 original size:33 final size:34
Alignment explanation
Indices: 1256007--1256156 Score: 123
Period size: 34 Copynumber: 4.5 Consensus size: 34
1255997 TCTTCAAAGC
* * *
1256007 CCACAACTCCGTGGCA-CCTTTTT-CTTTTCAAAGC
1 CCACAACTCTGTGGCATTCTTTTTCCTTTT--AAGT
* *
1256041 CCACCACTCCGTGGCA--CTTTTTCCTTTTAAGT
1 CCACAACTCTGTGGCATTCTTTTTCCTTTTAAGT
*
1256073 CCACAACTTCT-TGGCATTTTTTTTCCTTTTTAAGT
1 CCACAAC-TCTGTGGCATTCTTTTTCC-TTTTAAGT
* * *
1256108 CCACAACTCTGTGGTA-TCTTTCTCCTTTTAAGC
1 CCACAACTCTGTGGCATTCTTTTTCCTTTTAAGT
* *
1256141 CCACAAGTCAGTGGCA
1 CCACAACTCTGTGGCA
1256157 ACCTTCAAAA
Statistics
Matches: 98, Mismatches: 12, Indels: 13
0.80 0.10 0.11
Matches are distributed among these distances:
32 14 0.14
33 28 0.29
34 37 0.38
35 19 0.19
ACGTcount: A:0.19, C:0.31, G:0.13, T:0.37
Consensus pattern (34 bp):
CCACAACTCTGTGGCATTCTTTTTCCTTTTAAGT
Found at i:1256291 original size:49 final size:49
Alignment explanation
Indices: 1256222--1256665 Score: 515
Period size: 52 Copynumber: 8.9 Consensus size: 49
1256212 GGCATCTTCT
* *
1256222 TTTAAGCCCAAAATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTC
* * * *
1256271 TTTAAGACCAATGTCACTGGCCTTGAATCAGCACATTGGCA-C-----C
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTC
**
1256314 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGTGCCTTTGTCATC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTG---TC
*
1256366 TTTAAG-CTCAATATCGCTGGCCTTGTATCAGCATATTGGCACCTTTGTTATC
1 TTTAAGTC-CAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTG---TC
* * * *
1256418 TTTAAGCCCAATATTGCTGGCCTTGAAGCAGCATATTGGCGCCTTTGTCATC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTG---TC
* * *
1256470 TTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTTATC
1 -TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTC
*
1256520 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTG---TC
* **
1256572 TTTAAGTCCAATATCGCTGGCCTTGAATCAACATATTGGCACCTTCATC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTC
* *
1256621 TTTAAGTCCAGTATCGCTGGCCTTGAATCAGCATATTGGCGCCTT
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTT
1256666 CGTCATCTTT
Statistics
Matches: 342, Mismatches: 38, Indels: 30
0.83 0.09 0.07
Matches are distributed among these distances:
43 36 0.11
44 1 0.00
48 1 0.00
49 123 0.36
50 2 0.01
51 1 0.00
52 137 0.40
53 41 0.12
ACGTcount: A:0.23, C:0.25, G:0.19, T:0.33
Consensus pattern (49 bp):
TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTC
Found at i:1256396 original size:52 final size:52
Alignment explanation
Indices: 1256313--1256706 Score: 541
Period size: 52 Copynumber: 7.7 Consensus size: 52
1256303 ACATTGGCAC
*
1256313 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGTGCCTTTGTCAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCAT
* * *
1256365 CTTTAAG-CTCAATATCGCTGGCCTTGTATCAGCATATTGGCACCTTTGTTAT
1 CTTTAAGTC-CAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCAT
* * *
1256417 CTTTAAGCCCAATATTGCTGGCCTTGAAGCAGCATATTGGCGCCTTTGTCAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCAT
* * *
1256469 CTTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACC-TT-T-AT
1 C-TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCAT
1256519 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCAT
* *
1256571 CTTTAAGTCCAATATCGCTGGCCTTGAATCAACATATTGGCACC--T-TCAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCAT
* *
1256620 CTTTAAGTCCAGTATCGCTGGCCTTGAATCAGCATATTGGCGCCTTCGTCAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCAT
** * **
1256672 CTTTAAAACCCAATGTCATTGGCCTTGAATCAGCA
1 CTTT-AAGTCCAATATCGCTGGCCTTGAATCAGCA
1256707 CATAGGCATT
Statistics
Matches: 302, Mismatches: 30, Indels: 19
0.86 0.09 0.05
Matches are distributed among these distances:
49 85 0.28
50 6 0.02
51 3 0.01
52 146 0.48
53 62 0.21
ACGTcount: A:0.23, C:0.25, G:0.18, T:0.34
Consensus pattern (52 bp):
CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCAT
Found at i:1256627 original size:101 final size:101
Alignment explanation
Indices: 1256222--1256714 Score: 637
Period size: 101 Copynumber: 4.9 Consensus size: 101
1256212 GGCATCTTCT
* * * * *
1256222 TTTAAGCCCAAAATCGCTGGCCTTGAATCAGCATATTGGCACCTTTG---TCTTTAAGACCAATG
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATCTTTAAGTCCAATA
*
1256284 TCACTGGCCTTGAATCAGCACATTGGCA----C--C
66 TCGCTGGCCTTGAATCAGCACATTGGCACCTTCATC
*
1256314 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGTGCCTTTGTCATCTTTAAG-CTCAAT
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATCTTTAAGTC-CAAT
* * *
1256378 ATCGCTGGCCTTGTATCAGCATATTGGCACCTTTGTTATC
65 ATCGCTGGCCTTGAATCAGCACATTGGCACC--T-TCATC
* * *
1256418 TTTAAGCCCAATATTGCTGGCCTTGAAGCAGCATATTGGCGCCTTTGTCATCTTTTAAGTCCAAT
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATC-TTTAAGTCCAAT
* *
1256483 GTCGCTGGCCTTGAATCAGCACATTGGCACCTTTATC
65 ATCGCTGGCCTTGAATCAGCACATTGGCACCTTCATC
1256520 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATCTTTAAGTCCAATA
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATCTTTAAGTCCAATA
* *
1256585 TCGCTGGCCTTGAATCAACATATTGGCACCTTCATC
66 TCGCTGGCCTTGAATCAGCACATTGGCACCTTCATC
* * **
1256621 TTTAAGTCCAGTATCGCTGGCCTTGAATCAGCATATTGGCGCCTTCGTCATCTTTAAAACCCAAT
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATCTTT-AAGTCCAAT
* ** *
1256686 GTCATTGGCCTTGAATCAGCACATAGGCA
65 ATCGCTGGCCTTGAATCAGCACATTGGCA
1256715 TTCTTCTCAT
Statistics
Matches: 352, Mismatches: 33, Indels: 22
0.86 0.08 0.05
Matches are distributed among these distances:
92 43 0.12
94 1 0.00
95 37 0.11
101 98 0.28
102 84 0.24
103 1 0.00
104 49 0.14
105 38 0.11
106 1 0.00
ACGTcount: A:0.24, C:0.25, G:0.18, T:0.33
Consensus pattern (101 bp):
TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATCTTTAAGTCCAATA
TCGCTGGCCTTGAATCAGCACATTGGCACCTTCATC
Found at i:1256727 original size:154 final size:152
Alignment explanation
Indices: 1256222--1256706 Score: 614
Period size: 154 Copynumber: 3.2 Consensus size: 152
1256212 GGCATCTTCT
* * *
1256222 TTTAAGCCCAAAATCGCTGGCCTTGAATCAGCATATTGGCACCTTTG---TCTTTAAGACCAATG
1 TTTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTCATCTTTAAGTCCAATA
* *
1256284 TCACTGGCCTTGAATCAGCACATTGGCA----C--CTTTAAGTCCAATATCGCTGGCCTTGAATC
66 TCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATATCGCTGGCCTTGAATC
*
1256343 AGCATATTGGTGCCTTTGTCATC
131 AGCATATTGGCGCC-TTGTCATC
* * * *
1256366 TTTAAGCTCAATATCGCTGGCCTTGTATCAGCATATTGGCACCTTTGTTATCTTTAAGCCCAATA
1 TTTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTCATCTTTAAGTCCAATA
* * * *
1256431 TTGCTGGCCTTGAAGCAGCATATTGGCGCCTTTGTCATCTTTTAAGTCCAATGTCGCTGGCCTTG
66 TCGCTGGCCTTGAATCAGCATATTGGCACC--T-TCATC-TTTAAGTCCAATATCGCTGGCCTTG
* *
1256496 AATCAGCACATTGGCACCTT-T-ATC
127 AATCAGCATATTGGCGCCTTGTCATC
* *
1256520 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATCTTTAAGTCCAATA
1 TTTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTCATCTTTAAGTCCAATA
* *
1256585 TCGCTGGCCTTGAATCAACATATTGGCACCTTCATCTTTAAGTCCAGTATCGCTGGCCTTGAATC
66 TCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATATCGCTGGCCTTGAATC
1256650 AGCATATTGGCGCCTTCGTCATC
131 AGCATATTGGCGCCTT-GTCATC
* * **
1256673 TTTAAAACCCAATGTCATTGGCCTTGAATCAGCA
1 TTT-AAGCCCAATATCGCTGGCCTTGAATCAGCA
1256707 CATAGGCATT
Statistics
Matches: 291, Mismatches: 33, Indels: 24
0.84 0.09 0.07
Matches are distributed among these distances:
144 44 0.15
147 36 0.12
150 41 0.14
151 5 0.02
152 2 0.01
153 6 0.02
154 114 0.39
155 1 0.00
156 3 0.01
157 39 0.13
ACGTcount: A:0.23, C:0.25, G:0.18, T:0.33
Consensus pattern (152 bp):
TTTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTCATCTTTAAGTCCAATA
TCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATATCGCTGGCCTTGAATC
AGCATATTGGCGCCTTGTCATC
Found at i:1256757 original size:206 final size:203
Alignment explanation
Indices: 1256222--1256733 Score: 681
Period size: 206 Copynumber: 2.5 Consensus size: 203
1256212 GGCATCTTCT
* * * *
1256222 TTTAAGCCCAAAATCGCTGGCCTTGAATCAGCATATTGGCACCTT-T-GTCTTTAAGACCAATGT
1 TTTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTGTCATCTTTAAAACCAATGT
1256285 CACTGGCCTTGAATCAGCACATTGGCA---C-C-T-TTAAGTCCAATATCGCTGGCCTTGAATCA
66 CACTGGCCTTGAATCAGCACATTGGCACTTCTCATCTTAAGTCCAATATCGCTGGCCTTGAATCA
* * *
1256344 GCATATTGGTGCCTTTGTCATCTTTAAGCTCAATATCGCTGGCCTTGTATCAGCATATTGGCACC
131 GCATATTGGCGCCTTTGTCATCTTTAAGCTCAATATCGCTGGCCTTGAATCAACATATTGGCACC
*
1256409 TTTGTTATC
196 -TTGTCATC
* * **
1256418 TTTAAGCCCAATATTGCTGGCCTTGAAGCAGCATATTGGCGCCTTTGTCATCTTTTAAGTCCAAT
1 TTTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCC-TTGTCATC-TTTAAAACCAAT
*
1256483 GTCGCTGGCCTTGAATCAGCACATTGGCACCTT-T-ATCTTTAAGTCCAATATCGCTGGCCTTGA
64 GTCACTGGCCTTGAATCAGCACATTGGCA-CTTCTCATC-TTAAGTCCAATATCGCTGGCCTTGA
1256546 ATCAGCATATTGGCGCCTTTGTCATCTTTAAG-TCCAATATCGCTGGCCTTGAATCAACATATTG
127 ATCAGCATATTGGCGCCTTTGTCATCTTTAAGCT-CAATATCGCTGGCCTTGAATCAACATATTG
1256610 GCACC-T-TCATC
191 GCACCTTGTCATC
* *
1256621 TTTAAGTCCAGTATCGCTGGCCTTGAATCAGCATATTGGCGCCTTCGTCATCTTTAAAACCCAAT
1 TTTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTT-GTCATCTTTAAAA-CCAAT
* *
1256686 GTCATTGGCCTTGAATCAGCACATAGGCATTCTTCTCATCTTCAAGTC
64 GTCACTGGCCTTGAATCAGCACATTGGCA--CTTCTCATCTT-AAGTC
1256734 TAATGACGCT
Statistics
Matches: 276, Mismatches: 21, Indels: 28
0.85 0.06 0.09
Matches are distributed among these distances:
196 39 0.14
197 2 0.01
198 1 0.00
199 2 0.01
200 39 0.14
202 7 0.03
203 80 0.29
204 5 0.02
205 4 0.01
206 97 0.35
ACGTcount: A:0.23, C:0.26, G:0.18, T:0.33
Consensus pattern (203 bp):
TTTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTGTCATCTTTAAAACCAATGT
CACTGGCCTTGAATCAGCACATTGGCACTTCTCATCTTAAGTCCAATATCGCTGGCCTTGAATCA
GCATATTGGCGCCTTTGTCATCTTTAAGCTCAATATCGCTGGCCTTGAATCAACATATTGGCACC
TTGTCATC
Found at i:1256788 original size:51 final size:52
Alignment explanation
Indices: 1256699--1256824 Score: 209
Period size: 51 Copynumber: 2.4 Consensus size: 52
1256689 ATTGGCCTTG
* * * *
1256699 AATCAGCACATAGGCATTCTTCTCATCTTCAAGTCTAATGACGCTAACCATA
1 AATCAGCGCATTGACATTCTTTTCATCTTCAAGTCTAATGACGCTAACCATA
1256751 AATCAGCGCATTGACATTCTTTTC-TCTTCAAGTCTAATGACGCTAACCATA
1 AATCAGCGCATTGACATTCTTTTCATCTTCAAGTCTAATGACGCTAACCATA
1256802 AATCAGCGCATTGACATTCTTTT
1 AATCAGCGCATTGACATTCTTTT
1256825 TCTCATCTTT
Statistics
Matches: 70, Mismatches: 4, Indels: 1
0.93 0.05 0.01
Matches are distributed among these distances:
51 50 0.71
52 20 0.29
ACGTcount: A:0.30, C:0.25, G:0.12, T:0.33
Consensus pattern (52 bp):
AATCAGCGCATTGACATTCTTTTCATCTTCAAGTCTAATGACGCTAACCATA
Found at i:1257600 original size:21 final size:20
Alignment explanation
Indices: 1257574--1257630 Score: 71
Period size: 21 Copynumber: 2.8 Consensus size: 20
1257564 CTGCCAAGAA
*
1257574 AATGTATCGATACATTATCCT
1 AATGTATCGATACATGAT-CT
1257595 AATGTATCGATACACTGATCT
1 AATGTATCGATACA-TGATCT
*
1257616 -TTGTATCGATACATG
1 AATGTATCGATACATG
1257631 CAGGCAAATT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
19 2 0.06
20 12 0.36
21 16 0.48
22 3 0.09
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.37
Consensus pattern (20 bp):
AATGTATCGATACATGATCT
Found at i:1257674 original size:52 final size:52
Alignment explanation
Indices: 1257595--1257745 Score: 223
Period size: 52 Copynumber: 2.9 Consensus size: 52
1257585 ACATTATCCT
***
1257595 AATGTATCGATACACTGAT-CTTTGTATCGATACATGCAGGCAAATTTGCCCA
1 AATGTATCGATACACT-ATAAAATGTATCGATACATGCAGGCAAATTTGCCCA
* **
1257647 GATGTATCGATACACTATAAAATGTATCGATACATATAGGCAAATTTGCCCA
1 AATGTATCGATACACTATAAAATGTATCGATACATGCAGGCAAATTTGCCCA
*
1257699 AATGTATCGATACACTATAAAATGTATCGATACATGCAAGCAAATTT
1 AATGTATCGATACACTATAAAATGTATCGATACATGCAGGCAAATTT
1257746 TCATATTTCG
Statistics
Matches: 88, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
51 2 0.02
52 86 0.98
ACGTcount: A:0.37, C:0.18, G:0.15, T:0.30
Consensus pattern (52 bp):
AATGTATCGATACACTATAAAATGTATCGATACATGCAGGCAAATTTGCCCA
Found at i:1261714 original size:159 final size:158
Alignment explanation
Indices: 1261522--1261983 Score: 404
Period size: 159 Copynumber: 2.9 Consensus size: 158
1261512 TCGTTTTTCT
* ** * * *
1261522 TAGAATCAAAGTTTATACCTTAATTGAGACAAACTTGAATTTACACAATAATCTCCATTCTTTGA
1 TAGAATCAAAGTTCATATGTTAAATGAGACAAACATGAATTTACACAATAATCTCCATTCTTTCA
* * * *
1261587 ATGATTGGGCACCATAAACACTTTATCTTCACTGGGATGCACAATATTTACGCATTGGTTATGCA
66 ATGATTGGGCACCATAAACACGTTATCTTCATTGGGATGCACAATATTAATGCATTGGTTATGCA
* *
1261652 AGAAAAGCTTTTTCTGCCAC-GATTTTCCT
131 AGAAAAG-TTTTTCTGCCACTG-TTTCCCA
* * *** * * * * * * * *
1261681 TATATTTTGAGTTCGTATGTTAACTGAAACAAACATGGATTCT-TATAATAATCTTCATTCTTAC
1 TAGAATCAAAGTTCATATGTTAAATGAGACAAACATGAATT-TACACAATAATCTCCATTCTTTC
* * * ** * *
1261745 CATGGTTAGGCAACCA-AAATGCGTTCTCCTT-ATTGGGATACACAATATTAATGC-TT--TTAT
65 AATGATTGGGC-ACCATAAACACGTTAT-CTTCATTGGGATGCACAATATTAATGCATTGGTTAT
*
1261805 GTCATAAGAAAAGTTTTTTTCT-CCTCTGTTTCCCA
128 G-C--AAGAAAAG--TTTTTCTGCCACTGTTTCCCA
* * *
1261840 TGGAATCAAAGTTTATATGTTAAATGAGACAAA-AT-ATATTAACACAATAATCTCCATTCTTTC
1 TAGAATCAAAGTTCATATGTTAAATGAGACAAACATGA-ATTTACACAATAATCTCCATTCTTTC
* * *
1261903 AATGATTGGGCACAATATACACGTTATCTTCATTGGGATGCACAATATTGATGCATTGGTTATGC
65 AATGATTGGGCACCATAAACACGTTATCTTCATTGGGATGCACAATATTAATGCATTGGTTATGC
1261968 AAGAAAAGTTTTTCTG
130 AAGAAAAGTTTTTCTG
1261984 GTCACCTATT
Statistics
Matches: 228, Mismatches: 59, Indels: 34
0.71 0.18 0.11
Matches are distributed among these distances:
156 12 0.05
157 7 0.03
158 68 0.30
159 119 0.52
160 17 0.07
161 5 0.02
ACGTcount: A:0.32, C:0.17, G:0.14, T:0.36
Consensus pattern (158 bp):
TAGAATCAAAGTTCATATGTTAAATGAGACAAACATGAATTTACACAATAATCTCCATTCTTTCA
ATGATTGGGCACCATAAACACGTTATCTTCATTGGGATGCACAATATTAATGCATTGGTTATGCA
AGAAAAGTTTTTCTGCCACTGTTTCCCA
Found at i:1263874 original size:605 final size:600
Alignment explanation
Indices: 1262560--1264127 Score: 1913
Period size: 605 Copynumber: 2.6 Consensus size: 600
1262550 GATGCATTGG
* * **
1262560 TTATACAAGAAAAGCTTTTCTTGCCACAATTTTCCTTATATTTTGAGTTCATATGT-TAAATGAA
1 TTATATAAGAAAAGCTTTTCTTGCCACAATTTTCCTTATAATTTGAGTTTGTATGTCT-AATGAA
* * * * *
1262624 ACAAACATGGATTCCTATAGTAATCTTCATTCTTTTCGTGATTAGGCATCCAAAACACTTTTTCC
65 ACAAACATGGATTCTTATAGTAATCTTCATTCTTTTCATGATTAGGCAACCAAAACACATTCTCC
* * *
1262689 TTATTGGGATACACGATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTTCTCCTCTGTTTTCC
130 TTATTGGGATACACTATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTTCTCCACTATTTTCC
* * ** * * * *
1262754 TTGGAATCAATGTTTATAAGTTAAAAGAGAC-AAC-CATATATTAACACAATAATCTCGAATCTT
195 TTAGAATCAAAGTTTATACCTTAAATGAGACAAACACAGATA-T-ACGCAATAATCTC-ATTCTT
* * * *
1262817 TCAATGATTGGGCACCATAAACACGTTATCTACGTTGGGATGCACAATATTGACGAATCGGTTAT
257 TCAATGATTGGGCACCATAAACACGTTATCTTCATTGGGATGCACAATATTGATGAATTGGTTAT
* * * * * *
1262882 GCAAGAAAAGTTTTTTTTTTTGGCACGATTTTCCTTAAAGCAATGTTCATTTGTCAAATAAGATA
322 GCAAGAAAAG---CTTTTCTTGCCACGATTTTCCTTAAAGCAAAGTTCATTCGTCAAATAAGACA
* * * * * * *
1262947 AAAATAGATTCTTGTAATAATCTCCATTTTTTTATAATTAGGCAGCCAAAACACGCTCCTTCCAT
384 AAAATAGATTCTTATAACAATCACCATTATTTTATAATTAGGCAACCAAAACACACTCCCTCCAT
* * * *
1263012 GGGATGCATGATATTGATACTTTGATTTTCGCATGGTTTTCCCTCCGCTAACTTTTAAAATTAAA
449 GGGATGCATGATATTGATACTTTGATATTCGCATGCTTTTCCCTCCACTAACTTTTAAAATCAAA
*
1263077 GTTTGTCACTTAAAAGAGATAAAGATGAATTCTCATAATGATCTCCATAAACACATTCTATTCAT
514 GTTTGTCACTTAAAAGAG---AAGATGAATTCTCATAATGATCTCCATAAACACATTCCATTCAT
* *
1263142 TGGGTAGATGATATTGAAGTTTTGA
576 TGGATACATGATATTGAAGTTTTGA
* * * *
1263167 TTATATAAGAAAAACATTTT-TTGCCACAATTTTCCTTATAATTGGAGTTTGTATGTCAAACGAA
1 TTATATAAGAAAAGC-TTTTCTTGCCACAATTTTCCTTATAATTTGAGTTTGTATGTCTAATGAA
* * *
1263231 ACAAACGTGGATTCTTATAATAATCTTCATTCTTTTCATGATTAGGCAACTAAAACACATTCTCC
65 ACAAACATGGATTCTTATAGTAATCTTCATTCTTTTCATGATTAGGCAACCAAAACACATTCTCC
* * * *
1263296 TTATTGGGATACACTATATTAATGCTTTGGTTTCATAAGAAAAGCTTTTATCTCCACTATTTTTC
130 TTATTGGGATACACTATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTTCTCCACTATTTTCC
1263361 TTAGAATCAAAGTTTATACCTTAAATGAGACAAACACAGATATACGCAATAATCTCTATTCTTTC
195 TTAGAATCAAAGTTTATACCTTAAATGAGACAAACACAGATATACGCAATAATCTC-ATTCTTTC
* * * * * *
1263426 AACGATTAGGCACCTTAAACACGTTATCTTCATTTGGATGCACAATATTGATGCATTAGTTATGC
259 AATGATTGGGCACCATAAACACGTTATCTTCATTGGGATGCACAATATTGATGAATTGGTTATGC
* * * * **
1263491 AAGAAGAGCTTTTCTTGCCAC-TTATTTCCTTAAAGGAAAGTTCGTTCGTCAAATACTACAAAAA
324 AAGAAAAGCTTTTCTTGCCACGAT-TTTCCTTAAAGCAAAGTTCATTCGTCAAATAAGACAAAAA
* *
1263555 -AGGATTCTTATAACAATCACCATTATTTTGTAATTAGGCAACCAAAACACACTCTCCTCCTTGG
388 TA-GATTCTTATAACAATCACCATTATTTTATAATTAGGCAACCAAAACACACTC-CCTCCATGG
* ** *
1263619 GATGCATGATATTGATGCTTTGATATTCGCAAGAAATGCTTTTCTTTCCACTACCCTTTTAAAAT
451 GATGCATGATATTGATACTTTGATATTCGC-----ATGCTTTTCCCTCCACTA-ACTTTTAAAAT
*
1263684 CAAAGTTTGTGC-CTT-AAA-AG-AGATGAATTCTCATAATGATCTCCA-AACCACATTCCATTC
510 CAAAGTTTGT-CACTTAAAAGAGAAGATGAATTCTCATAATGATCTCCATAAACACATTCCATT-
* *
1263744 CTTTGGATACATGATATTGATGTTTTGA
573 CATTGGATACATGATATTGAAGTTTTGA
** * *
1263772 TTATATAAGAAAAGCTTTTCTTGCCATGATTTTCCTTATAATTTGAGTTTGTATGTCTAGTAAAA
1 TTATATAAGAAAAGCTTTTCTTGCCACAATTTTCCTTATAATTTGAGTTTGTATGTCTAATGAAA
* *
1263837 CAAACATGGATTCTTATAGTAATCTTCATTTTTTTCATGATTAAGCAACCAAAACACATTCTCCC
66 CAAACATGGATTCTTATAGTAATCTTCATTCTTTTCATGATTAGGCAACCAAAACACATTCT-CC
* * * *
1263902 TTA-TGGGATACA-TAATATTAATGCTTTAATTTAATAACAAAAGTTTTTTTCACCAC-AGTTTT
130 TTATTGGGATACACT-ATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTTCTCCACTA-TTTT
* * * * ** * * *
1263964 CCATAAAATCATAGTTTATACCTTAACTGAGACAAACATTGATTTATGCAATAATCAACATTCTT
193 CCTTAGAATCAAAGTTTATACCTTAAATGAGACAAACACAGATATACGCAATAATC-TCATTCTT
* *
1264029 TCAATGATTGGGCACCATAAACATGCTATCTTCATTGGGATGCACAATATTGATGAATTGGTTAT
257 TCAATGATTGGGCACCATAAACACGTTATCTTCATTGGGATGCACAATATTGATGAATTGGTTAT
*
1264094 GCAAGAAAAGCTTTTCTTGCCACAATTTTCCTTA
322 GCAAGAAAAGCTTTTCTTGCCACGATTTTCCTTA
1264128 TATTTTGACT
Statistics
Matches: 823, Mismatches: 117, Indels: 44
0.84 0.12 0.04
Matches are distributed among these distances:
603 2 0.00
604 106 0.13
605 381 0.46
606 7 0.01
607 272 0.33
608 8 0.01
609 7 0.01
610 17 0.02
611 22 0.03
612 1 0.00
ACGTcount: A:0.33, C:0.17, G:0.13, T:0.37
Consensus pattern (600 bp):
TTATATAAGAAAAGCTTTTCTTGCCACAATTTTCCTTATAATTTGAGTTTGTATGTCTAATGAAA
CAAACATGGATTCTTATAGTAATCTTCATTCTTTTCATGATTAGGCAACCAAAACACATTCTCCT
TATTGGGATACACTATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTTCTCCACTATTTTCCT
TAGAATCAAAGTTTATACCTTAAATGAGACAAACACAGATATACGCAATAATCTCATTCTTTCAA
TGATTGGGCACCATAAACACGTTATCTTCATTGGGATGCACAATATTGATGAATTGGTTATGCAA
GAAAAGCTTTTCTTGCCACGATTTTCCTTAAAGCAAAGTTCATTCGTCAAATAAGACAAAAATAG
ATTCTTATAACAATCACCATTATTTTATAATTAGGCAACCAAAACACACTCCCTCCATGGGATGC
ATGATATTGATACTTTGATATTCGCATGCTTTTCCCTCCACTAACTTTTAAAATCAAAGTTTGTC
ACTTAAAAGAGAAGATGAATTCTCATAATGATCTCCATAAACACATTCCATTCATTGGATACATG
ATATTGAAGTTTTGA
Found at i:1264225 original size:159 final size:157
Alignment explanation
Indices: 1263776--1264241 Score: 367
Period size: 159 Copynumber: 2.9 Consensus size: 157
1263766 TTTTGATTAT
** * * *
1263776 ATAAGAAAAGCTTTTCTTGCCATGATTTTCCTTATAATTTGAGTTTGTATGTCT-AGTAAAACAA
1 ATAAGAAAAGCTTTTCTTGCCACAATTTTCCTTATATTTTGAGTTTGTATGT-TAAATGAAACAA
* * * *
1263840 ACATGGATTCTTATAGTAATCTTCATTTTTTTCATGATTAAGCAACCAAAACACATTCTCCCTTA
65 ACATGGATTC-TATAATAATCTTCATTCTTTTCATGATTAGGC-ACCAAAACACGTTCT-CCTTA
* ** *
1263905 -TGGGATACATAATATTAATGCTTTAATTTA
127 TTGGGATACACAATATTAATGAATTAAGTTA
* * * * * * ** * ** * *
1263935 ATAACAAAAG-TTTTTTTCACCACAGTTTTCCATAAAATCAT-AGTTTATACCTTAACTGAGACA
1 ATAAGAAAAGCTTTTCTT-GCCACAATTTTCC-TTATATTTTGAGTTTGTATGTTAAATGAAACA
* ** * * * *
1263998 AACATTGATT-TATGCAATAATCAACATTC-TTTCAATGATTGGGCACCATAAACATGCTAT-CT
64 AACATGGATTCTAT--AATAATCTTCATTCTTTTC-ATGATTAGGCACCA-AAACACGTTCTCCT
* * *
1264060 TCATTGGGATGCACAATATTGATGAATT-GGTT-
125 T-ATTGGGATACACAATATTAATGAATTAAGTTA
*
1264092 ATGCAAGAAAAGCTTTTCTTGCCACAATTTTCCTTATATTTTGACTTTGTATGTTAAATGAAACA
1 AT--AAGAAAAGCTTTTCTTGCCACAATTTTCCTTATATTTTGAGTTTGTATGTTAAATGAAACA
*
1264157 AACATGGATTCCTATAATCATCTTCATTCTTTTCATGATTAGGCATCCAAAACACGTTCTCCTTA
64 AACATGGATT-CTATAATAATCTTCATTCTTTTCATGATTAGGCA-CCAAAACACGTTCTCCTTA
**
1264222 TT-GGATACATGATATTAATG
127 TTGGGATACACAATATTAATG
1264242 CTTTGATTTC
Statistics
Matches: 228, Mismatches: 61, Indels: 37
0.70 0.19 0.11
Matches are distributed among these distances:
157 8 0.04
158 37 0.16
159 160 0.70
160 20 0.09
161 3 0.01
ACGTcount: A:0.33, C:0.17, G:0.12, T:0.38
Consensus pattern (157 bp):
ATAAGAAAAGCTTTTCTTGCCACAATTTTCCTTATATTTTGAGTTTGTATGTTAAATGAAACAAA
CATGGATTCTATAATAATCTTCATTCTTTTCATGATTAGGCACCAAAACACGTTCTCCTTATTGG
GATACACAATATTAATGAATTAAGTTA
Found at i:1264443 original size:317 final size:319
Alignment explanation
Indices: 1263778--1264444 Score: 900
Period size: 317 Copynumber: 2.1 Consensus size: 319
1263768 TTGATTATAT
* * *
1263778 AAGAAAAGCTTTTCTTGCCA-TGATTTTCCTTATAATTTGAGTTTGTATGTCTAGTAAAACAAAC
1 AAGAAAAGCTTTTCTTGCCACTAATTTTCCTTATAATTTGACTTTGTATGTCTAATAAAACAAAC
* * *
1263842 ATGGATTCTTATAGTAATCTTCATTTTTTTCATGATTAAGCAACCAAAACACATTCTCCCTTATG
66 ATGGATTCCTATAATAATCTTCATTCTTTTCATGATTAAGCAACCAAAACACATTCTCCCTTATG
1263907 GGATACATAATATTAATGCTTTAATTTAATAACAAAAGTTTTTTTCACCACAGTTTTCCATAAAA
131 GGATACATAATATTAATGCTTTAATTTAATAACAAAAGTTTTTTTCACCACAGTTTTCCATAAAA
* * * **
1263972 TCATAGTTTATACCTTAACTGAGACAAACATTGATTTATGCAATAATCAACATTCTTTCAATGAT
196 TCAAAGTTTATACCTTAAATGAGACAAACATTGATTAACACAATAATCAACATTCTTTCAATGAT
* *
1264037 TGGGCACCATAAACATGCTATCTTCATTGGGATGCACAATATTGATGAATTGGTTATGC
261 TGGGCACCATAAACACGCTATCTTCATTGGGATGCACAATATTGACGAATTGGTTATGC
* *
1264096 AAGAAAAGCTTTTCTTGCCAC-AATTTTCCTTATATTTTGACTTTGTATGT-TAAATGAAACAAA
1 AAGAAAAGCTTTTCTTGCCACTAATTTTCCTTATAATTTGACTTTGTATGTCT-AATAAAACAAA
* * * *
1264159 CATGGATTCCTATAATCATCTTCATTCTTTTCATGATTAGGCATCCAAAACACGTTCT-CCTTAT
65 CATGGATTCCTATAATAATCTTCATTCTTTTCATGATTAAGCAACCAAAACACATTCTCCCTTAT
* * * * * * * * * **
1264223 TGGATACATGATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTTCTCCTCCGTTTTCCTTGGA
130 GGGATACATAATATTAATGCTTTAATTTAATAACAAAAGTTTTTTTCACCACAGTTTTCCATAAA
* *
1264288 ATCAAAGTTTATACGTTAAATGAGACAAACATAT-ATTAACACAATAACCTCTA-A-TCTTTCAA
195 ATCAAAGTTTATACCTTAAATGAGACAAACAT-TGATTAACACAATAA--TCAACATTCTTTCAA
* * * *
1264350 TGATTGGGCACCATAAACACGTTATCTTCTTTGGGATGCACAATATTGACGCATTGGTTTTGC
257 TGATTGGGCACCATAAACACGCTATCTTCATTGGGATGCACAATATTGACGAATTGGTTATGC
* *
1264413 AAGAAAAGTTTTTCTTGCCACTTA-TTTCCTTA
1 AAGAAAAGCTTTTCTTGCCACTAATTTTCCTTA
1264445 AAGCAAAGTT
Statistics
Matches: 305, Mismatches: 38, Indels: 13
0.86 0.11 0.04
Matches are distributed among these distances:
317 193 0.63
318 109 0.36
319 3 0.01
ACGTcount: A:0.32, C:0.17, G:0.12, T:0.38
Consensus pattern (319 bp):
AAGAAAAGCTTTTCTTGCCACTAATTTTCCTTATAATTTGACTTTGTATGTCTAATAAAACAAAC
ATGGATTCCTATAATAATCTTCATTCTTTTCATGATTAAGCAACCAAAACACATTCTCCCTTATG
GGATACATAATATTAATGCTTTAATTTAATAACAAAAGTTTTTTTCACCACAGTTTTCCATAAAA
TCAAAGTTTATACCTTAAATGAGACAAACATTGATTAACACAATAATCAACATTCTTTCAATGAT
TGGGCACCATAAACACGCTATCTTCATTGGGATGCACAATATTGACGAATTGGTTATGC
Found at i:1264452 original size:158 final size:156
Alignment explanation
Indices: 1264025--1264454 Score: 345
Period size: 158 Copynumber: 2.7 Consensus size: 156
1264015 TAATCAACAT
* * *
1264025 TCTTTCAATGATTGGGCACCATAAACATGCTATCTTCATTGGGATGCACAATATTGATGAATTGG
1 TCTTTCAATGATTGGGCACCATAAACACG-TATCTTCTTTGGGATGCACAATATTGATGCATTGG
* * * * *** * * *
1264090 TTATGCAAGAAAAGCTTTTCTTGCCACAATTTTCCTTATATTTTGACTTTGTATGTTAAATGAAA
65 TTTTGCAAGAAAAGTTTTTCTTGCCACTA-TTTCCTTA-AATCAAAGTTTATACGTTAAATGAAA
* * *
1264155 CAAACATGGATTCCTATAATCATCTTCAT
128 CAAACATAGATTCCAATAATCATCTTCAA
* * * * ** * *
1264184 TCTTTTC-ATGATTAGGCATCCA-AAACACGT-TCTCCTTATTGGATACATGATATTAATGCTTT
1 TC-TTTCAATGATTGGGCA-CCATAAACACGTATCTTCTT-TGGGATGCACAATATTGATGCATT
* *** * * *
1264246 GATTTCATAAGAAAAGTTTTT-TTCTCCTCCGT-TTTCCTTGGAATCAAAGTTTATACGTTAAAT
63 GGTTTTGCAAGAAAAGTTTTTCTT-GCC-AC-TATTTCCTT-AAATCAAAGTTTATACGTTAAAT
* * *
1264309 GAGACAAACATATATTAACACAATAA-CCTC-T-AA
124 GAAACAAACATAGATT--C-CAATAATCATCTTCAA
*
1264342 TCTTTCAATGATTGGGCACCATAAACACGTTATCTTCTTTGGGATGCACAATATTGACGCATTGG
1 TCTTTCAATGATTGGGCACCATAAACACG-TATCTTCTTTGGGATGCACAATATTGATGCATTGG
*
1264407 TTTTGCAAGAAAAGTTTTTCTTGCCACTTATTTCCTTAAAGCAAAGTT
65 TTTTGCAAGAAAAGTTTTTCTTGCCAC-TATTTCCTTAAATCAAAGTT
1264455 CGTTTGTCAA
Statistics
Matches: 203, Mismatches: 52, Indels: 33
0.70 0.18 0.11
Matches are distributed among these distances:
157 14 0.07
158 101 0.50
159 64 0.32
160 19 0.09
161 5 0.02
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (156 bp):
TCTTTCAATGATTGGGCACCATAAACACGTATCTTCTTTGGGATGCACAATATTGATGCATTGGT
TTTGCAAGAAAAGTTTTTCTTGCCACTATTTCCTTAAATCAAAGTTTATACGTTAAATGAAACAA
ACATAGATTCCAATAATCATCTTCAA
Found at i:1264562 original size:317 final size:317
Alignment explanation
Indices: 1263778--1264567 Score: 732
Period size: 317 Copynumber: 2.5 Consensus size: 317
1263768 TTGATTATAT
** **** * * * * * *
1263778 AAGAAAAGCTTTTCTTGCCATGATTTTCCTTATAATTTGAGTTTGTATGTCTAGTAAAACAAACA
1 AAGAAAAGCTTTTCTTGCCACAATTTTCCTTATAAGCAAACTTCGTATGTCAAATGAAACAAAAA
* * * * * * * * * * *
1263843 TGGATTCTTATAGTAATCTTCATTTTTTTCATGATTAAGCAACCAAAACACATTCTCCCTTATGG
66 TAGATTCCTATAATAATCTCCATTCTTTTCAGGATTAGGCAGCCAAAACACGTTCT-CATTATAG
* ** *
1263908 GATACATAATATTAATGCTTTAATTTAATAACAAAAGTTTTTTTCACCACAGTTTTCCATAAAAT
130 GATACATCATAACAATGCTTTGATTTAATAACAAAAGTTTTTTTCACCACAGTTTTCCATAAAAT
* * * **
1263973 CATAGTTTATACCTTAACTGAGACAAACATTGATTTATGCAATAATCAACATTCTTTCAATGATT
195 CAAAGTTTATACCTTAAATGAGACAAACATTGATTAACACAATAATCAACATTCTTTCAATGATT
* *
1264038 GGGCACCATAAACATGCTATCTTCATTGGGATGCACAATATTGATGAATTGGTTATGC
260 GGGCACCATAAACACGCTATCTTCATTGGGATGCACAATATTGACGAATTGGTTATGC
***** * * *
1264096 AAGAAAAGCTTTTCTTGCCACAATTTTCCTTATATTTTGACTTTGTATGTTAAATGAAACAAACA
1 AAGAAAAGCTTTTCTTGCCACAATTTTCCTTATAAGCAAACTTCGTATGTCAAATGAAACAAAAA
* * * * * * *
1264161 TGGATTCCTATAATCATCTTCATTCTTTTCATGATTAGGCATCCAAAACACGTTCTCCTTATTGG
66 TAGATTCCTATAATAATCTCCATTCTTTTCAGGATTAGGCAGCCAAAACACGTTCTCATTATAGG
* ** * * * * * * **
1264226 ATACATGATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTTCTCCTCCGTTTTCCTTGGAATC
131 ATACATCATAACAATGCTTTGATTTAATAACAAAAGTTTTTTTCACCACAGTTTTCCATAAAATC
* *
1264291 AAAGTTTATACGTTAAATGAGACAAACATAT-ATTAACACAATAACCTCTA-A-TCTTTCAATGA
196 AAAGTTTATACCTTAAATGAGACAAACAT-TGATTAACACAATAA--TCAACATTCTTTCAATGA
* * * *
1264353 TTGGGCACCATAAACACGTTATCTTCTTTGGGATGCACAATATTGACGCATTGGTTTTGC
258 TTGGGCACCATAAACACGCTATCTTCATTGGGATGCACAATATTGACGAATTGGTTATGC
* * * *
1264413 AAGAAAAGTTTTTCTTGCCAC-TTATTTCCTTA-AAGCAAAGTTCGTTTGTCAAAT-AAGACAAA
1 AAGAAAAGCTTTTCTTGCCACAAT-TTTCCTTATAAGCAAACTTCGTATGTCAAATGAA-ACAAA
* * ** * *
1264475 AATAGATTCTTGTAATAATCTCCAATT-TTTTTGGGATTAGGTAGCCGAAACACGCTCTCTCATT
64 AATAGATTCCTATAATAATCTCC-ATTCTTTTCAGGATTAGGCAGCCAAAACACG-T-TCTCATT
* * *
1264539 -TAGGATGCATCCTAACGATGCTTTGATTT
126 ATAGGATACATCATAACAATGCTTTGATTT
1264568 TCGCAAGTAA
Statistics
Matches: 394, Mismatches: 70, Indels: 17
0.82 0.15 0.04
Matches are distributed among these distances:
315 2 0.01
316 57 0.14
317 218 0.55
318 114 0.29
319 3 0.01
ACGTcount: A:0.32, C:0.17, G:0.13, T:0.37
Consensus pattern (317 bp):
AAGAAAAGCTTTTCTTGCCACAATTTTCCTTATAAGCAAACTTCGTATGTCAAATGAAACAAAAA
TAGATTCCTATAATAATCTCCATTCTTTTCAGGATTAGGCAGCCAAAACACGTTCTCATTATAGG
ATACATCATAACAATGCTTTGATTTAATAACAAAAGTTTTTTTCACCACAGTTTTCCATAAAATC
AAAGTTTATACCTTAAATGAGACAAACATTGATTAACACAATAATCAACATTCTTTCAATGATTG
GGCACCATAAACACGCTATCTTCATTGGGATGCACAATATTGACGAATTGGTTATGC
Found at i:1266612 original size:611 final size:607
Alignment explanation
Indices: 1265107--1266613 Score: 2095
Period size: 611 Copynumber: 2.5 Consensus size: 607
1265097 AATAATCTCC
* * * *
1265107 TTTTATCTCCACCGTTTTTCTTAGAATCGAAGTTTATACCTTAAATGAGATAAACATGATTTACT
1 TTTTTTCTCCACC-TTTTTCTTAGAATCAAAGTTTATACCTTAACTGAGACAAACATGATTTA-T
* * * **
1265172 GTAATAATCTCCATTCTTTCAATGGTTGGGCACCTTAAACATGTTATCTTCATTTGGATGCACAA
64 GCAATAATCTCCATTCTTTCAATGATTGGGCACCATAAACACATTATCTTC-TTTGGATGCACAA
* * * * *
1265237 TATTGATGCATTGGTTATACAAGAAGAGCTTTTCTTGCCACTTATTTCCTTAAAGGAAAGTTCAT
128 TATTGACGCATTGGTTATGCAAGAA-AGGTTTTATTGCCACTTATTTCC-TAAAGCAAAGTTCAT
* ** * * * * *
1265302 ACGTCAAATACTACAAAAAAGGATTCT-TGAAATAATCACCATTATTTTGTAATTAGGTAGCCAA
191 TCGTCAAATAAGACAAAAATGGATT-TATGTAATAATCTCCATT-TTTTGTGATTAGGAAGCCAA
* * *
1265366 AACATGCTCTCTTCCTTGGGATGCATGATATTGATTCTTTAATTTTCGCAAGAAATGCTTTTCTT
254 AACATGCTCTCTTCATTGGGATGCATGATATTGATGCTTTAATTTTCACAAGAAATGCTTTTCTT
* * * * *
1265431 TCCACTACCTTTTTAAAATCAATGTTTGCCCCTTAAAATAGACAAAGATGGATTCTTATAATGAT
319 TCCACGACCTTTTTAAAATCAAAGTTTACCCCTTAAAAGAGACAAAGATAGATTCTTATAATGAT
* * * *
1265496 CTCCAAAAACACATTCTATTCATTAGGAAACATGATATTGATGTTTTGGTTACATAAGAAGAGCT
384 CTCCAAAAACACATTCTATTCATTAGGAAACATGATACTAATGTTTTGGATACATAAGAAAAGCT
** * *
1265561 TTTCTTCCCAAGATTTTCCTTATAATTTGAGTTCGTATGTCAAAGAAAACAAACATGGATTATTA
449 TTTCTTCCCAAGATTTTCCACATAATTTGAGCTCGTATGTCAAAGAAAACAAACATGGACTATTA
*
1265626 TAAAAATCTTCATTCTTTTCATGATTAGGCAACCAAAACACATTCTCCTTATTGGGATACAGGAT
514 TAAAAATCTTCATTCTTTTCAGGATTAGGCAACCAAAACACATTCTCCTTATTGGGATACAGGAT
1265691 ATTAACGCTTTAATTTAACAAGAAAAGTT
579 ATTAACGCTTTAATTTAACAAGAAAAGTT
* * *
1265720 TTTTTTCTGCACCTTTTTTTGTAGAATCAAAGTTTATACCATAACT-ACGACAAACATGGATTTA
1 TTTTTTCTCCACCTTTTTCT-TAGAATCAAAGTTTATACCTTAACTGA-GACAAACAT-GATTTA
** * *
1265784 CACAATATTCTCCATTCTTTCAATGATTGGGAACCATAAACACATTATCTTCTTTGGGATGCACA
63 TGCAATAATCTCCATTCTTTCAATGATTGGGCACCATAAACACATTATCTTCTTT-GGATGCACA
* * * * **
1265849 ATACTGTCGCATTGGTTATGCAAGAAAAGTTTTATTGCCACTTATTTTCGTAGGGCAAAGTTCAT
127 ATATTGACGCATTGGTTATGCAAGAAAGGTTTTATTGCCACTTA-TTTCCTAAAGCAAAGTTCAT
* *
1265914 TCGTCAAATAAGACAAAAATGGATTCATATAATAATCTCCATTTTTTGTGATTAGGAAGCCAAAA
191 TCGTCAAATAAGACAAAAATGGATTTATGTAATAATCTCCATTTTTTGTGATTAGGAAGCCAAAA
* *
1265979 CATGCACTCTTCATTGGGATGCATGATATTGATGCTTTGATTTTCACAAGAAATGCTTTTCTTTC
256 CATGCTCTCTTCATTGGGATGCATGATATTGATGCTTTAATTTTCACAAGAAATGCTTTTCTTTC
*
1266044 CACGGCCTTTTTAAAATCAAAGTTTACCCCTTAAAAGAGACAAAGATAGATTCTTATAATGATCT
321 CACGACCTTTTTAAAATCAAAGTTTACCCCTTAAAAGAGACAAAGATAGATTCTTATAATGATCT
*
1266109 CCAAAAACACATTCTATTCATTAGGAAACATGATACTAATGTTTTGGATATATAAGAAAAGCTTT
386 CCAAAAACACATTCTATTCATTAGGAAACATGATACTAATGTTTTGGATACATAAGAAAAGCTTT
* * *
1266174 TCTTTCCACA-ATTTTTCACATAATTTGAGCTCGTATGTCAAATG-AAACAAACATGGACTCTTA
451 TCTTCCCA-AGATTTTCCACATAATTTGAGCTCGTATGTCAAA-GAAAACAAACATGGACTATTA
* *
1266237 TAATAATCTTCATTCTTTTCAGGATTAGGCAACCAAAACACATTCTCCTTATTGGGATACATGAT
514 TAAAAATCTTCATTCTTTTCAGGATTAGGCAACCAAAACACATTCTCCTTATTGGGATACAGGAT
* * * *
1266302 ATTAATGCTTTGATTTCATAAGAAAAGTT
579 ATTAACGCTTTAATTTAACAAGAAAAGTT
*
1266331 TTTTTTCTCCACCATTTTCCTTAGAATCAAAGTTTATACCTTAACTGAGACAAACATGAATTTAT
1 TTTTTTCTCCACC-TTTTTCTTAGAATCAAAGTTTATACCTTAACTGAGACAAACATG-ATTTAT
* * * *
1266396 GCAATAATCTCCATTCTTTCAATGATTGGGCACCACAAACACATTATCTTCTTTCTGATACACAG
64 GCAATAATCTCCATTCTTTCAATGATTGGGCACCATAAACACATTATCTTCTTT-GGATGCACAA
* * *
1266461 TATTGACGAATTGGTTCTGCAAGAAAGGTTTTATTGCCATTTATTTCCTCAAAGCAAAGTTCATT
128 TATTGACGCATTGGTTATGCAAGAAAGGTTTTATTGCCACTTATTTCCT-AAAGCAAAGTTCATT
* *
1266526 CGTCAAATAAGACAAAAATGGATTTATGTAATAATCTCCGTTTTTTGTGATTATGAAGCCAAAAC
192 CGTCAAATAAGACAAAAATGGATTTATGTAATAATCTCCATTTTTTGTGATTAGGAAGCCAAAAC
* * * *
1266591 ATGTTTTTTTCATTAGGATGCAT
257 ATGCTCTCTTCATTGGGATGCAT
1266614 ATTGATGTTT
Statistics
Matches: 784, Mismatches: 98, Indels: 26
0.86 0.11 0.03
Matches are distributed among these distances:
610 6 0.01
611 574 0.73
612 79 0.10
613 119 0.15
614 6 0.01
ACGTcount: A:0.33, C:0.17, G:0.13, T:0.36
Consensus pattern (607 bp):
TTTTTTCTCCACCTTTTTCTTAGAATCAAAGTTTATACCTTAACTGAGACAAACATGATTTATGC
AATAATCTCCATTCTTTCAATGATTGGGCACCATAAACACATTATCTTCTTTGGATGCACAATAT
TGACGCATTGGTTATGCAAGAAAGGTTTTATTGCCACTTATTTCCTAAAGCAAAGTTCATTCGTC
AAATAAGACAAAAATGGATTTATGTAATAATCTCCATTTTTTGTGATTAGGAAGCCAAAACATGC
TCTCTTCATTGGGATGCATGATATTGATGCTTTAATTTTCACAAGAAATGCTTTTCTTTCCACGA
CCTTTTTAAAATCAAAGTTTACCCCTTAAAAGAGACAAAGATAGATTCTTATAATGATCTCCAAA
AACACATTCTATTCATTAGGAAACATGATACTAATGTTTTGGATACATAAGAAAAGCTTTTCTTC
CCAAGATTTTCCACATAATTTGAGCTCGTATGTCAAAGAAAACAAACATGGACTATTATAAAAAT
CTTCATTCTTTTCAGGATTAGGCAACCAAAACACATTCTCCTTATTGGGATACAGGATATTAACG
CTTTAATTTAACAAGAAAAGTT
Found at i:1268771 original size:612 final size:608
Alignment explanation
Indices: 1267025--1274057 Score: 6054
Period size: 612 Copynumber: 11.6 Consensus size: 608
1267015 TCGGTTATGC
** * * * *
1267025 AAGAAAAGCTTTTCTTGCTGCAATTTTTCTTATATTTTGAGTTCGTATGTTAAATGAAACAAACA
1 AAGAAAAGCTTTTCTTGCCACGATTTTCCTTATAATTTGAGTTCGTATGTCAAATGAAACAAACA
* ** *
1267090 TAGATTCCCATAATAATCTTCTTTCTTTTCATGATTAGGCAACCAAAACACATTCTCCTTATTGG
66 TGGATTCTTATAATAATCTTCATTCTTTTCATGATTAGGCAACCAAAACACATTCTCCTTATTGG
* * * *
1267155 GATACACAATATTAATGCTTTAATTTCTTAAGAAAAGTTTTTTTCTCCACCGTTTTCCTTAGAAT
131 GATACACGATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTTCTCCACCATTTTCCTTAGAAT
* * * * * *
1267220 CAAAGTTTATACCTTAACTGAGACAAATATGGATTTGCATAATAATCTCCATTCTTTCAACGATT
196 CAAAGTTTATACCTTAAATGAGACAAACAAGGATTTACACAATAATCTCCATTCTTTCAATGATT
* * * * * * *
1267285 GGGCACCTTAAACACGTTATCTTCATTTGGATGTACAATATTGATGCATTGGTAATGTAAGAAGA
261 GGGCACCATAAACACGTTATCTTCATTGGGATGCA-AATATTGACGCATTGGTTATGCAAGAAAA
* * * **
1267350 GCTTTTCTTGCCACTTATTTCCTTAAAGGAAAGTTCATTCATCAAATACTACAAAAA-AGGATTC
325 GCTTTTCTTGCCACTTATTTCCTTAAAGCAAAGTTTATTCGTCAAATAAGACAAAAATA-GATTC
* * * * *
1267414 TTGTAATAATCACCATTATTTTGTAATTAGGCTGCCAAAACA-TGTTCTCTTCCTTGGG--G--T
389 TTGTAATAATCTCCATTTTTTTGTGATTAGGCTGCCAAAACACT-CTCTCTTCATTGGGATGCAT
* ***
1267474 G-CATTGA-----T--TTTT-GCAAGAAATGCTTTTCTTTCTGTTACCTTTTTAAAATCAAAGTT
453 GATATTGATGCTTTGATTTTCGCAAGAAATGCTTTTCTTTCCACTACCTTTTTAAAATCAAAGTT
* * *
1267530 TGTCCCGTAAAAGAGACAAAGATAAATTCTCATAATGATCTCC-AAACTACATTCTATTCATTGG
518 TGTCCCTTAAAAGAGAC-AA-ATGAATTCTCATAATGATCTCCAAAAC-ACATTCTATTCATTAG
* * **
1267594 GATGCATAATATTGACATTTTGATTATAT
580 GATACATGATATTGATGTTTTGATTATAT
* * ** *
1267623 AAGAAAAGCTTTTCTTGCCACGATTTTCCTTATAATTTGAGTTTGTATGTTAAAAAAAATAAACA
1 AAGAAAAGCTTTTCTTGCCACGATTTTCCTTATAATTTGAGTTCGTATGTCAAATGAAACAAACA
1267688 TGGATTCTTATAATAATCTTCATT-TTTTCATGATTAGGCAACCAAAACACATTCTCCTTATTGG
66 TGGATTCTTATAATAATCTTCATTCTTTTCATGATTAGGCAACCAAAACACATTCTCCTTATTGG
* * * * * *
1267752 GATACATGATATTAATGCTTTAATTTAATAAGAAAAGCTTTTTTCTCCACCATTTTTCATAGAAT
131 GATACACGATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTTCTCCACCATTTTCCTTAGAAT
* * * *
1267817 CAAAGTTTATACCTTAATTGAGACAAACATGGATTTACGCAATATTCTCCATTCTTTCAATGATT
196 CAAAGTTTATACCTTAAATGAGACAAACAAGGATTTACACAATAATCTCCATTCTTTCAATGATT
* * **
1267882 GGACACCATAAACACGTTATCTTCATTAGGATGCACAATATTGATTCATTGGTTATGCAAGAAAA
261 GGGCACCATAAACACGTTATCTTCATTGGGATGCA-AATATTGACGCATTGGTTATGCAAGAAAA
* * * *
1267947 G-TTTTATTGCCACTTATTTCCTTAAAGCAAAGTTCT-TTCATCAAATAGGACAAAAATGGATTC
325 GCTTTTCTTGCCACTTATTTCCTTAAAGCAAAGTT-TATTCGTCAAATAAGACAAAAATAGATTC
* * ** * *
1268010 ATGTAACAATCTCCA-TTTTTTGTGATTAGGAAGCCAAAACA-TGCTTTCTTCATTGGGACGCAT
389 TTGTAATAATCTCCATTTTTTTGTGATTAGGCTGCCAAAACACT-CTCTCTTCATTGGGATGCAT
* * * *
1268073 GATATTAATGCTTTGATTTTTGCAAGAAATGCTTTTCTTTCCATTACCTTTTTAAAATCTAAGTT
453 GATATTGATGCTTTGATTTTCGCAAGAAATGCTTTTCTTTCCACTACCTTTTTAAAATCAAAGTT
* * *
1268138 TGCCCCTTAAAAGAGACAAA-G-ATTCTTATAATAATCTCCAAAAGCACATTCTATTCATTAAGG
518 TGTCCCTTAAAAGAGACAAATGAATTCTCATAATGATCTCCAAAA-CACATTCTATTCATT-AGG
*
1268201 A-ACATGATATTGATGTTTTGGTTATAT
581 ATACATGATATTGATGTTTTGATTATAT
* * * * * *
1268228 AAGAAAAGCTTTTCTTGCCATGATTTTCCATATAATTTAAGTTCATATGTCCAATAAAACAAACA
1 AAGAAAAGCTTTTCTTGCCACGATTTTCCTTATAATTTGAGTTCGTATGTCAAATGAAACAAACA
* * * * *
1268293 TAGATTCTTATAATAATCTTCTTTCTTTTCATGATTAGGTAGCCAAAACACATTCTCCTTGTTGG
66 TGGATTCTTATAATAATCTTCATTCTTTTCATGATTAGGCAACCAAAACACATTCTCCTTATTGG
* * * * *
1268358 GATACACGATATTAATGTTTTGATTTCTTAAGAAAAGTTTTTTTTTTTGCACCGTTTTCCTT-GA
131 GATACACGATATTAATGCTTTGATTTCATAAGAAAAG--TTTTTTTCTCCACCATTTTCCTTAG-
* *
1268422 AATCAAAGTTTATACCTAAAATGAGACAAACAAGGATTTACACAATAATCTCCATTGTTTCAATG
193 AATCAAAGTTTATACCTTAAATGAGACAAACAAGGATTTACACAATAATCTCCATTCTTTCAATG
* ** * * * * * *
1268487 ATTGGGCACCATAAACACATTATCTTCAAAGGGGTGCATAGTATTGGCACATTGGTCATGTAAGA
258 ATTGGGCACCATAAACACGTTATCTTCATTGGGATGCA-AATATTGACGCATTGGTTATGCAAGA
* * *
1268552 AAGGCTTTTCTTGCCACTTATTTCCTTAAAGCAAAGTTTATTCGTCAAACAATACAAAAATAGAT
322 AAAGCTTTTCTTGCCACTTATTTCCTTAAAGCAAAGTTTATTCGTCAAATAAGACAAAAATAGAT
1268617 TCTTGTAATAATCTCCATTTTTTTTTGTGATTAGGCTGCCAAAACACTCTCTCTTCATTGGGATG
387 TCTTGTAATAATCTCCA--TTTTTTTGTGATTAGGCTGCCAAAACACTCTCTCTTCATTGGGATG
* * * ** *
1268682 CATAATATTGATGCTTTGATTTTCGTAAGAAATGCTTTTCTTTCCACTACCATAATAAAATTAAA
450 CATGATATTGATGCTTTGATTTTCGCAAGAAATGCTTTTCTTTCCACTACCTTTTTAAAATCAAA
* * ** *
1268747 GGTTGTCCCTTAAAAGAAACAAAGATGAATTCTCATAGCGATCTCTAAAACCACATTCTATTCAT
515 GTTTGTCCCTTAAAAGAGAC-AA-ATGAATTCTCATAATGATCTCCAAAA-CACATTCTATTCAT
* *
1268812 TGGGATACATGATACTGATGTTTTGATTATAT
577 TAGGATACATGATATTGATGTTTTGATTATAT
** * **
1268844 AAGAAAAGCTTTTCAAGCCACGATTTTCCTTATAATTTGAGTTCTTATGTTGAATGAAACAAACA
1 AAGAAAAGCTTTTCTTGCCACGATTTTCCTTATAATTTGAGTTCGTATGTCAAATGAAACAAACA
* * * * * * * *
1268909 TGGATTCTTATAATAATCTTCATCCTTTTCCTCATTAGGCAACCAGAACGCATTCCCCTTATCGA
66 TGGATTCTTATAATAATCTTCATTCTTTTCATGATTAGGCAACCAAAACACATTCTCCTTATTGG
* * * *
1268974 GTTACACGATATTAATGCTTTGATTTCATAAGAAAA-CTTTTTTCTCCATCATTTTCCTTAAAAT
131 GATACACGATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTTCTCCACCATTTTCCTTAGAAT
* * * * * *
1269038 TAAGGTTTATATCTTAATTGAGACAAACATGGATTTACACAATAATATCCATTCTTTCAATGATT
196 CAAAGTTTATACCTTAAATGAGACAAACAAGGATTTACACAATAATCTCCATTCTTTCAATGATT
* ** * * *
1269103 GGGCACCATAAACACGTTATCTTCTTTGGGATGCACAACGTTTACCCTTTGGTTATGCAAGAAAA
261 GGGCACCATAAACACGTTATCTTCATTGGGATGCA-AATATTGACGCATTGGTTATGCAAGAAAA
* * * * * * *
1269168 -CTTTTTCTTGCCACTTATTTCCTTGAAGTAAATTTTATTCGTCAAATAATACAAAAATGGGTTA
325 GC-TTTTCTTGCCACTTATTTCCTTAAAGCAAAGTTTATTCGTCAAATAAGACAAAAATAGATTC
* ** * * *
1269232 TTGTAATAATCTCAATTTTTTTGTG---AGAATGCC-AAACA-TGCTTTTTTCATTGGGATGAAT
389 TTGTAATAATCTCCATTTTTTTGTGATTAGGCTGCCAAAACACT-CTCTCTTCATTGGGATGCAT
* * * * *
1269292 TATATTGATGCTTTGATTTTCGTAGGAAATGCTTAT-TTTCCACTATCTTTTTAAAATCAAAGTT
453 GATATTGATGCTTTGATTTTCGCAAGAAATGCTTTTCTTTCCACTACCTTTTTAAAATCAAAGTT
* * * ** * *
1269356 TGCCCCCTAAAAGAGACAAA-GAAGGATTCTCATAATAATCTCCAGAAATGCATTCTCTTTATTA
518 TGTCCCTTAAAAGAGACAAATG-A--ATTCTCATAATGATCTCCA-AAACACATTCTATTCATTA
* * *
1269420 AGATATATGATATTGACGTTTTGATTATAT
579 GGATACATGATATTGATGTTTTGATTATAT
* * * *
1269450 AAGAAAAGCTTTTTTTGCCACAATTTTTCTTATAATTTGAGTTCGTATGTTAAATGAAACAAACA
1 AAGAAAAGCTTTTCTTGCCACGATTTTCCTTATAATTTGAGTTCGTATGTCAAATGAAACAAACA
* * * *
1269515 TGGATTCTTATAATAATCTTCATTCTTTTCATGATTAGGCAACCGAAACACATTTTTCTTATTAG
66 TGGATTCTTATAATAATCTTCATTCTTTTCATGATTAGGCAACCAAAACACATTCTCCTTATTGG
* * *
1269580 GATACACGATATTAATGCTTTGATTTGAAAAGAAAAGTTTTTTTCTTCACCATTTTCCTTAGAAT
131 GATACACGATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTTCTCCACCATTTTCCTTAGAAT
* * ** *
1269645 CAAAATTTATACCTTAAATGAGACAAACAAGGATCTATGCAATAATCTCAATTCTTTCAATGATT
196 CAAAGTTTATACCTTAAATGAGACAAACAAGGATTTACACAATAATCTCCATTCTTTCAATGATT
* ** ** *
1269710 GGGCATCGCAAACACGTTATCTTTTTTGGGATGCATAATATTGACGCATTGGTTATGCAACAAAA
261 GGGCACCATAAACACGTTATCTTCATTGGGATGCA-AATATTGACGCATTGGTTATGCAAGAAAA
* * *
1269775 GTTTTTCTTGCCATTTATTTCCTTAAAGCAAAGTTCATTCGTCAAATAAGACAAAAA-ATGATTC
325 GCTTTTCTTGCCACTTATTTCCTTAAAGCAAAGTTTATTCGTCAAATAAGACAAAAATA-GATTC
* * * * * * *
1269839 TTGTAGTAATCTCCATTATATTATGATTCGG-TAGCCAAAACACGCTCTCTTTATTGGGATGCAT
389 TTGTAATAATCTCCATTTTTTTGTGATTAGGCT-GCCAAAACACTCTCTCTTCATTGGGATGCAT
** * * *
1269903 GATATTCCTGCTTTGATTTTTGCAAGAAATACTTTTCTTTCCACTACATTTTTAAAATCAAAGTT
453 GATATTGATGCTTTGATTTTCGCAAGAAATGCTTTTCTTTCCACTACCTTTTTAAAATCAAAGTT
* * * * *
1269968 TATCCTTTAAAAGAGACAAAGTTGAATTCTCATAATAATCTCCAAAAACACAATCTATCCATT-G
518 TGTCCCTTAAAAGAGACAAA--TGAATTCTCATAATGATCTCC-AAAACACATTCTATTCATTAG
1270032 GATACATGATTATTGATGTTTTGATTATAT
580 GATACATGA-TATTGATGTTTTGATTATAT
* * * **
1270062 AAGAAATGTTTTTTTTGCCACGATTTTCCTTATAATTTGAGTTTATATGTCAAATGAAACAAACA
1 AAGAAAAGCTTTTCTTGCCACGATTTTCCTTATAATTTGAGTTCGTATGTCAAATGAAACAAACA
* **
1270127 TGGATTCTTATAATAATCTTCATTCTTTTCATGATTAGGCAACCAAAACACATCCTAATTATTGG
66 TGGATTCTTATAATAATCTTCATTCTTTTCATGATTAGGCAACCAAAACACATTCTCCTTATTGG
* * * * * ** *
1270192 GATACACGTTATTATTGCTTTGATTTCATAAGAAAAGTTGTTTTGTTCACTGTTTCCCTTAGAAT
131 GATACACGATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTTCTCCACCATTTTCCTTAGAAT
* * * * * *
1270257 CAAAGTTTATACCGTAATTGAGACAAACCTA-GATTTACGCAATAATCTCTATTCTTTCAAATAA
196 CAAAGTTTATACCTTAAATGAGACAAA-CAAGGATTTACACAATAATCTCCATTCTTTC-AATGA
* * * *
1270321 TTGGGCACCACAAACACGTTATCTTCTTTGGGGTACGAAATATTGACGCATTGGTTATGCAAGTA
259 TTGGGCACCATAAACACGTTATCTTCATTGGGATGC-AAATATTGACGCATTGGTTATGCAAG-A
* * ** * *
1270386 AAA--TATTTATTGCCAATTATTTCCTTAAAGCAAAGTTCGTTGGACAAATAAGACAAAAATAGA
322 AAAGCT-TTTCTTGCCACTTATTTCCTTAAAGCAAAGTTTATTCGTCAAATAAGACAAAAATAGA
* * * * * * * *
1270449 TTCCTGTAATGATCTCCATTTTTTTATGATTAGGCAGTCGAAACACGCTCTCTTCCTTGGGATGC
386 TTCTTGTAATAATCTCCATTTTTTTGTGATTAGGCTGCCAAAACACTCTCTCTTCATTGGGATGC
** * *
1270514 ATCCTAATGATGCTTTGATTTTCGTAAG-AATGCTTTTCTTTCCACTACCTTTTTAAAATCAAAG
451 ATGATATTGATGCTTTGATTTTCGCAAGAAATGCTTTTCTTTCCACTACCTTTTTAAAATCAAAG
* * * *
1270578 TTTGTCCCATAGAAGAGACAAAGATGAATTCTCATAATGATCTCTAAAAACATATTCTATTCATT
516 TTTGTCCCTTAAAAGAGAC-AA-ATGAATTCTCATAATGATCTC-CAAAACACATTCTATTCATT
*
1270643 GGGATACATGATATTGATGTTTTGATTATA-
578 AGGATACATGATATTGATGTTTTGATTATAT
* * * * *
1270673 AAGGAAAAACTTTTCTTACCATC-ATTTTCCATATAATTTGAGTTTGTATATCAAAT-AAA-AAA
1 AA-GAAAAGCTTTTCTTGCCA-CGATTTTCCTTATAATTTGAGTTCGTATGTCAAATGAAACAAA
*
1270735 -ATGGATTCTTATAATAATCTTCATTCTTTTCATGATTAGGCAACCAAAACACATTCTCCGTATT
64 CATGGATTCTTATAATAATCTTCATTCTTTTCATGATTAGGCAACCAAAACACATTCTCCTTATT
* * * * * *
1270799 GGGATACACAATATTAATGATTTGATTTCATAAGAAAAGCTTTTTTCTCCATCATTTTTCATAGA
129 GGGATACACGATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTTCTCCACCATTTTCCTTAGA
* * * ** *
1270864 ATCAATGTTTATACAC-TAAATAAGGCAAACAAGGATTTACACAGGAATCTCTATTCTTTCAATG
194 ATCAAAGTTTATAC-CTTAAATGAGACAAACAAGGATTTACACAATAATCTCCATTCTTTCAATG
* * **
1270928 ATTGGGCACCATAAATATGTTATCTTCATTGGGATACGC-AATATTGATTCATTGGTTATGCAAG
258 ATTGGGCACCATAAACACGTTATCTTCATTGGGAT--GCAAATATTGACGCATTGGTTATGCAAG
* * * ** * *
1270992 AAAAGTTTTTCTTGCCACTAATTTCCTTAGAGCAAAGTTCT-TTCAACAAAGAAGACAAAGAA-G
321 AAAAGCTTTTCTTGCCACTTATTTCCTTAAAGCAAAGTT-TATTCGTCAAATAAGACAAA-AATA
* * * *
1271055 GATTCTTGTAATAATCTCCATTATATTGTGATTAGG-TAGCGAAAACACGCTCTCTTCATAT-GG
384 GATTCTTGTAATAATCTCCATTTTTTTGTGATTAGGCT-GCCAAAACACTCTCTCTTCAT-TGGG
* * *
1271118 ATGCATGATATTGATGCTTTGATTTTCGGAAGAAATGCTTTTCTTTCTATTACCTTTTTAAAATC
447 ATGCATGATATTGATGCTTTGATTTTCGCAAGAAATGCTTTTCTTTCCACTACCTTTTTAAAATC
* * *
1271183 AAAGTTTATCCCTTAAAAGAGACAAAGATGAATTTTCATGATGATCTCCATAAACACATTCTATT
512 AAAGTTTGTCCCTTAAAAGAGAC-AA-ATGAATTCTCATAATGATCTCCA-AAACACATTCTATT
* *
1271248 CATTAGGATACATGATACTGATGTTTTGA-TACCAT
574 CATTAGGATACATGATATTGATGTTTTGATTA-TAT
* *
1271283 -AGAAAAAGCTTTTCTTGCCACGATTTTCCTTATAATTTGAGTTTGTATGTCAAATGAAGCAAAC
1 AAG-AAAAGCTTTTCTTGCCACGATTTTCCTTATAATTTGAGTTCGTATGTCAAATGAAACAAAC
* * * ** *
1271347 ATAGATTCCTATAATAATCTTCATTCTTTTCATTATTAGGCAACCAAAACACATTCTTTTTTTTG
65 ATGGATTCTTATAATAATCTTCATTCTTTTCATGATTAGGCAACCAAAACACATTCTCCTTATTG
* * * * * * *
1271412 GGATACATGATATTAATCCTTTAATTTAATAAGAAAAGTTTTTTTCTCCACCATTTTTCGTGGAA
130 GGATACACGATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTTCTCCACCATTTTCCTTAGAA
* * * ** ** *
1271477 TCAAAGTTTATACCTTAACTAAGACAAACATGGATTTATGCAATAATCAACATACTTTCAATGAT
195 TCAAAGTTTATACCTTAAATGAGACAAACAAGGATTTACACAATAATCTCCATTCTTTCAATGAT
* * * * * * ** *
1271542 TGGACACCATAAGCATGTTATCTTCATTGGGATGCACGACATTGATGTGTTGGTTATACAAGAAA
260 TGGGCACCATAAACACGTTATCTTCATTGGGATGCA-AATATTGACGCATTGGTTATGCAAGAAA
* ***** * * * * *
1271607 AGCTTTTCTTGCCAC-GATTTTCCTTATATTTTGAGTTCGCA-T-GTTAATTGAA-ACAAACATG
324 AGCTTTTCTTGCCACTTA-TTTCCTTA-AAGCAAAGTT--TATTCGTCAAAT-AAGACAAAAATA
* * ** * *
1271668 GATTCTTATAATAATCTTCATTCTTTTCATGATTAGGAAT-CCAAAACACGT-TCTCCGT-ATTG
384 GATTCTTGTAATAATCTCCATT-TTTTTGTGATTAGG-CTGCCAAAACAC-TCTCT-CTTCATTG
** * * * * *
1271730 GGATATATGATATTAATGCTTTGATTTCATTGCAA-ACAAAG-------TT-GA-TA---TGTTA
445 GGATGCATGATATTGATGCTTTGATTT--TCGCAAGA-AATGCTTTTCTTTCCACTACCTTTTTA
* ** * * * * * * * *
1271782 AATGAGACAAA-CATAT--ATTAACACA-ATAAACTCCAA-TCT-TTCAATGATTACGAACCATA
507 AA--A-TCAAAGTTTGTCCCTTAAAAGAGACAAA-T-GAATTCTCAT-AATGA-T-C--TCCA-A
* * * * * * ** * ** *
1271841 AACTCGTTATCTTC-TTTGAGATGCACAATACTGATGCATTGGTTA-AGT
561 AACACATTCTATTCATTAG-GATACATGATATTGATGTTTTGATTATA-T
* * **** * *
1271889 AAGAAAAGTTTTTCTTGCCAC-TTATTTCCTTA-AAGCAAAGTTCAT-TCGTCAAAT-AAGATAA
1 AAGAAAAGCTTTTCTTGCCACGAT-TTTCCTTATAATTTGAGTTCGTAT-GTCAAATGAA-ACAA
* * * ** * *
1271950 AAATAGATTCTTGTAATAATCTTCATT-TTTTTGTGATTAGGCAGCCAAAACA-A-GCTCTCTTC
63 ACATGGATTCTTATAATAATCTTCATTCTTTTCATGATTAGGCAACCAAAACACATTCTC-CTT-
* * * * ** * * * **
1272012 CA-TAGGATGCATGATATTGATGCTTTGATTTTCGCAAGAAATGCTTTTCTT-TCCACTACCTT-
126 -ATTGGGATACACGATATTAATGCTTTGA-TTTCATAAGAAAAG-TTTTTTTCTCCACCATTTTC
* * ** * * * * * * ** *
1272074 -TTAAAATTAGTGTTTGTCCCTTAAAAGAGACAAAGATGAATTTATGCAATAATCTCCACTCTTT
188 CTTAGAATCAAAGTTTATACCTTAAATGAGACAAACAAGGATTTACACAATAATCTCCATTCTTT
* * ** * * * *
1272138 GAATGATTGGGCACCATAAACACATTATCTTCATTCTGAAGCGCAATTTTGACACATTGGTTATG
253 CAATGATTGGGCACCATAAACACGTTATCTTCATTGGGATGC-AAATATTGACGCATTGGTTATG
* * * * *
1272203 TAGGAAAAGTTTTTCTTGCCACTTATTTCCTTGAAGCAAAGTTTGTTCGTCAAATAAGACAAAAA
317 CAAGAAAAGCTTTTCTTGCCACTTATTTCCTTAAAGCAAAGTTTATTCGTCAAATAAGACAAAAA
* * * * *
1272268 CAGATTCTTGTAGA-AATCTCCA-TTTTTTGGGATTAGGCAGCCAAAACACGCTCTCTTCCTTGG
382 TAGATTCTTGTA-ATAATCTCCATTTTTTTGTGATTAGGCTGCCAAAACACTCTCTCTTCATTGG
* * * * *
1272331 GATGCATGATATTAATGCTTTGATTTTCGCAAGAAATGCTTTTTTTTCTATTACCTTTTGAAAAT
446 GATGCATGATATTGATGCTTTGATTTTCGCAAGAAATGCTTTTCTTTCCACTACCTTTTTAAAAT
* * **
1272396 TAAAGTTTATCCCTTAAAAGAGACAAAGATGAATTCTCATGGTGATCTCCATAAACACATTCTAT
511 CAAAGTTTGTCCCTTAAAAGAGAC-AA-ATGAATTCTCATAATGATCTCCA-AAACACATTCTAT
* *
1272461 TCACTAGGATACATGATATTGATGTTTTGA-TACCAT
573 TCATTAGGATACATGATATTGATGTTTTGATTA-TAT
*
1272497 -AGAAAAAGCTTTTCTTGCCACGATTTTCCTTATAATTTGAGTT-TTATGTCAAATGAAACAAAC
1 AAG-AAAAGCTTTTCTTGCCACGATTTTCCTTATAATTTGAGTTCGTATGTCAAATGAAACAAAC
* * * *
1272560 ATAGATTCTTATAATAATCTTCATTCTTTTCATTATTAGGCAACCAAAACACATTCTCTTTTTTG
65 ATGGATTCTTATAATAATCTTCATTCTTTTCATGATTAGGCAACCAAAACACATTCTCCTTATTG
* * * * * * * *
1272625 GGATACATGATATTAATCCTTTAATTTAATAAGAAAAGTTTTTTTCTCCGCCATTTTTCGTGGAA
130 GGATACACGATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTTCTCCACCATTTTCCTTAGAA
* ** * ** ** * *
1272690 TCAAAGTCTATACCTTAGCTGAGACAAACATGGATTTATGCAATAATCAACATACTTTCAACGAT
195 TCAAAGTTTATACCTTAAATGAGACAAACAAGGATTTACACAATAATCTCCATTCTTTCAATGAT
* * * * ** *
1272755 TGGGCACCATAAGCACTGTTATCTTCATTGGGATGCACGACATTGATGTGTTGGTTATACAAGAA
260 TGGGCACCATAAACAC-GTTATCTTCATTGGGATGCA-AATATTGACGCATTGGTTATGCAAGAA
* ***** * * * ** **
1272820 AAGCTTTTCTTGCCA-TGATTTTCCTTATATTTTGAGTTCATAT-GTTAATTGAA-ACAAGCACG
323 AAGCTTTTCTTGCCACTTA-TTTCCTTA-AAGCAAAGTTTAT-TCGTCAAAT-AAGACAAAAATA
* * ** * * *
1272882 GATTCTTATAATAATCTTCATTCTTTTCATGATTAGGAAT-CCAAAACA-TGTTCTCCTT-ATTA
384 GATTCTTGTAATAATCTCCATT-TTTTTGTGATTAGG-CTGCCAAAACACT-CTCT-CTTCATTG
* * * * * * * **
1272944 GGATACATGATATTAATGTTTTGATTTCATTGCAATCAAA-G-TTTATATGTT--A--A--ATGA
445 GGATGCATGATATTGATGCTTTGATTT--TCGCAA-GAAATGCTTT-TCT-TTCCACTACCTTTT
* * * ** * ** * * * ****
1273001 GACAAA-CATA-TATG-AACATAATAA-ACTCCAAT--CTT-TCAATGATTGGGAACCATAAACA
505 TA-AAATCAAAGTTTGTCCCTTAA-AAGAGACAAATGAATTCTC-AT-AATGATCTCCA-AAACA
* * * * * * ** * ** * * *
1273059 CGTTATCTTCTTTGGGATGCACAATACTGATGCATTGGTTTTGT
565 CATTCTATTCATTAGGATACATGATATTGATGTTTTGATTATAT
* * * **** *
1273103 AAGAAAAGTTTTTCTTGCCAC-TTATTTCCATA-AAGCAAAGTTCGT-TCGTCAAAT-AAGATAA
1 AAGAAAAGCTTTTCTTGCCACGAT-TTTCCTTATAATTTGAGTTCGTAT-GTCAAATGAA-ACAA
* * * * ** * *
1273164 AAATAGATTCTTGTAATAATCTCCATT-TTTTTGTGATTAGGCAGCCAAAACA-A-GCTCTCTTG
63 ACATGGATTCTTATAATAATCTTCATTCTTTTCATGATTAGGCAACCAAAACACATTCTC-CTT-
* * * * * ** * * * **
1273226 CA-TAGGATGCATGATATTGATGCTTTAATTTTTGTAAGAAATGCTTTTCTT-TCCACTACCTT-
126 -ATTGGGATACACGATATTAATGCTTTGA-TTTCATAAGAAAAG-TTTTTTTCTCCACCATTTTC
* * ** * * * * * * **
1273288 -TTAAAATTAGTGTTTGTCCCTTAAAAGAGACAAAGATGAATTTATGCAATAATCTCCATTCTTT
188 CTTAGAATCAAAGTTTATACCTTAAATGAGACAAACAAGGATTTACACAATAATCTCCATTCTTT
* * * ** * * *
1273352 GAATGATTGGGCACCATAAACACATTATCATCATTCTGAAGCGCAATATTGACACATTGGTTATG
253 CAATGATTGGGCACCATAAACACGTTATCTTCATTGGGATGC-AAATATTGACGCATTGGTTATG
* * * * *
1273417 CAGGAAAAGTTTTTCTTGCCACTTATTTCTTTAAAGCAAAGTTTGTTCGTCAAATAACAC-AAAA
317 CAAGAAAAGCTTTTCTTGCCACTTATTTCCTTAAAGCAAAGTTTATTCGTCAAATAAGACAAAAA
* * *
1273481 TAGATTCTTGTAGA-AATCTCCATTTTTTT-TGATTAGGCAGCCAAAACACGCTCTCTTTC-TTA
382 TAGATTCTTGTA-ATAATCTCCATTTTTTTGTGATTAGGCTGCCAAAACACTCTCTC-TTCATTG
* * ** * *
1273543 GAATGCATGATGTTGATGCTTTGATTTTCATAAGAAATGCTTTTCTTTCTACTACCATTTTAAAA
445 GGATGCATGATATTGATGCTTTGATTTTCGCAAGAAATGCTTTTCTTTCCACTACCTTTTTAAAA
* * *
1273608 TCAAAGTTTGTCCCTTAAAAGTGATAAAGATGAATTCTCATAATGATCTCCAAAAACATATTCTA
510 TCAAAGTTTGTCCCTTAAAAGAGA-CAA-ATGAATTCTCATAATGATCTCC-AAAACACATTCTA
* * *
1273673 TTCATTGGGATACATGATACTGATGTTTTGATTACAT
572 TTCATTAGGATACATGATATTGATGTTTTGATTATAT
* * * *
1273710 AAAAAAAGCTTTTCTTGCCACGATATTCCTTATAATTTGAGTTCATGTGTCAAATGAAACAAACA
1 AAGAAAAGCTTTTCTTGCCACGATTTTCCTTATAATTTGAGTTCGTATGTCAAATGAAACAAACA
* ** * * * *
1273775 TGTATTCTTATAATAATCTTCAGCCTTTTCCTGATTAGGCAACCAAAACACATTCCCCTTATCGT
66 TGGATTCTTATAATAATCTTCATTCTTTTCATGATTAGGCAACCAAAACACATTCTCCTTATTGG
* * ** * *
1273840 GATACACGATATCAATGCTTTGATTTCATAAGAAAAGCTTTTTTCTCCACCGCTTTCCCTAAAAT
131 GATACACGATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTTCTCCACCATTTTCCTTAGAAT
* * * * * * *
1273905 CAAAGTTTATACCTTAAATGAGACAAATATGGATCTAGACAAAAATCTCCATTCTTACAATGGTT
196 CAAAGTTTATACCTTAAATGAGACAAACAAGGATTTACACAATAATCTCCATTCTTTCAATGATT
* * * ** *
1273970 GGGGCACCATAAAAATGTTATCTTCAATGGGGCGCACAATATTGACTGCAATGGTTATGCAAGAA
261 -GGGCACCATAAACACGTTATCTTCATTGGGATGCA-AATATTGAC-GCATTGGTTATGCAAGAA
* *
1274035 AAGCTTGTCTTGCCACTTTTTTC
323 AAGCTTTTCTTGCCACTTATTTC
1274058 TTTATATTTT
Statistics
Matches: 5146, Mismatches: 1044, Indels: 476
0.77 0.16 0.07
Matches are distributed among these distances:
595 35 0.01
596 71 0.01
597 220 0.04
598 89 0.02
599 51 0.01
600 60 0.01
601 32 0.01
602 63 0.01
603 191 0.04
604 155 0.03
605 242 0.05
606 492 0.10
607 379 0.07
608 558 0.11
609 499 0.10
610 160 0.03
611 179 0.03
612 890 0.17
613 439 0.09
614 108 0.02
615 15 0.00
616 213 0.04
617 5 0.00
ACGTcount: A:0.33, C:0.17, G:0.14, T:0.37
Consensus pattern (608 bp):
AAGAAAAGCTTTTCTTGCCACGATTTTCCTTATAATTTGAGTTCGTATGTCAAATGAAACAAACA
TGGATTCTTATAATAATCTTCATTCTTTTCATGATTAGGCAACCAAAACACATTCTCCTTATTGG
GATACACGATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTTCTCCACCATTTTCCTTAGAAT
CAAAGTTTATACCTTAAATGAGACAAACAAGGATTTACACAATAATCTCCATTCTTTCAATGATT
GGGCACCATAAACACGTTATCTTCATTGGGATGCAAATATTGACGCATTGGTTATGCAAGAAAAG
CTTTTCTTGCCACTTATTTCCTTAAAGCAAAGTTTATTCGTCAAATAAGACAAAAATAGATTCTT
GTAATAATCTCCATTTTTTTGTGATTAGGCTGCCAAAACACTCTCTCTTCATTGGGATGCATGAT
ATTGATGCTTTGATTTTCGCAAGAAATGCTTTTCTTTCCACTACCTTTTTAAAATCAAAGTTTGT
CCCTTAAAAGAGACAAATGAATTCTCATAATGATCTCCAAAACACATTCTATTCATTAGGATACA
TGATATTGATGTTTTGATTATAT
Found at i:1273274 original size:158 final size:155
Alignment explanation
Indices: 1273097--1273589 Score: 360
Period size: 157 Copynumber: 3.1 Consensus size: 155
1273087 GATGCATTGG
* * *
1273097 TTTTGTAAGAAAAGTTTTTCTTGCCACTTATTTCCATAAAGCAAAGTTCGTTCGTCAAATAAGAT
1 TTTTGTAAGAAAAGCTTTTCTTGCCACTTATTTCTATAAAGCAAAGTTTGTTCGTCAAATAAGA-
1273162 AAAAATAGATTCTTGTAATAATCTCCATTTTTTTGTGATTAGGCAGCCAAAACAAGCTCTCTTGC
65 AAAAATAGATTCTTGTAATAATCTCCATTTTTTTGTGATTAGGCAGCCAAAACAAGCTCTCTT-C
1273227 ATAGGATGCATGATATTGATGCTTTAAT
129 ATAGGATGCATGATATTGATGCTTT-AT
* * ** ** * * *
1273255 TTTTGTAAGAAATGCTTTTCTTTCCAC-TACCTTT-TA-AAATTAGTGTTTGTCCCTTAAA-AGA
1 TTTTGTAAGAAAAGCTTTTCTTGCCACTTA--TTTCTATAAAGCAAAGTTTGTTCGTCAAATA-A
* * * *
1273316 GACAAAGAT-GAATT-TATGCAATAATCTCCA-TTCTTTGAATGATTGGGCA-CCATAAACACA-
63 GA-AAAAATAG-ATTCT-TGTAATAATCTCCATTTTTTTG--TGATTAGGCAGCCA-AAACA-AG
* * * ** * *** ** * **
1273376 TTATCATCATTCTGAAGCGCAATATTGACACATTGG
121 CTCTCTTCA-TAGGATGCATGATATTGATGCTTTAT
* * * * * * *
1273412 TTATGCAGGAAAAGTTTTTCTTGCCACTTATTTCTTTAAAGCAAAGTTTGTTCGTCAAATAACAC
1 TTTTGTAAGAAAAGCTTTTCTTGCCACTTATTTCTATAAAGCAAAGTTTGTTCGTCAAATAAGAA
*
1273477 AAAATAGATTCTTGTAGA-AATCTCCATTTTTTT-TGATTAGGCAGCCAAAACACGCTCTCTTTC
66 AAAATAGATTCTTGTA-ATAATCTCCATTTTTTTGTGATTAGGCAGCCAAAACAAGCTCTC-TTC
* * *
1273540 TTAGAATGCATGATGTTGATGCTTTGAT
129 ATAGGATGCATGATATTGATGCTTT-AT
** *
1273568 TTTCATAAGAAATGCTTTTCTT
1 TTTTGTAAGAAAAGCTTTTCTT
1273590 TCTACTACCA
Statistics
Matches: 237, Mismatches: 76, Indels: 46
0.66 0.21 0.13
Matches are distributed among these distances:
155 30 0.13
156 32 0.14
157 85 0.36
158 85 0.36
159 5 0.02
ACGTcount: A:0.31, C:0.16, G:0.15, T:0.38
Consensus pattern (155 bp):
TTTTGTAAGAAAAGCTTTTCTTGCCACTTATTTCTATAAAGCAAAGTTTGTTCGTCAAATAAGAA
AAAATAGATTCTTGTAATAATCTCCATTTTTTTGTGATTAGGCAGCCAAAACAAGCTCTCTTCAT
AGGATGCATGATATTGATGCTTTAT
Found at i:1274372 original size:320 final size:319
Alignment explanation
Indices: 1273739--1274377 Score: 834
Period size: 320 Copynumber: 2.0 Consensus size: 319
1273729 ACGATATTCC
* * * *
1273739 TTATAATTTGAGTTCATGTGTCAAATGAAACAAACATGTATTCTTATAATAATCTTCAGCCTTTT
1 TTATAATTTGAGTTCATATGTCAAATAAAACAAACATGGATTCTTATAATAATATTCAGCCTTTT
* * * *
1273804 CCTGATTAGGCAACCAAAACACATTCCCCTTATCGTGATACACGATATCAATGCTTTGATTTCAT
66 CCTGATTAGGCAACCAAAACAAATTCCCCTTATCGGGATAAACGATATCAACGCTTTGATTTCAT
* *
1273869 AAGAAAAGCTTTTTTCTCCACCGCTTTCCCTAAAATCAAAGTTTATACCTTAAATGAGACAAATA
131 AAGAAAAGCTTTTTTCTCCACCGCTTTCCCTAAAACCAAAGTTTATACCTTAAATGAGACAAACA
* * *
1273934 TGGATCTAGACAAAAATCTCCATTCTTACAATGGTTGGGGCACCATAAAAATGTTATCTTCAATG
196 TGGATCTACACAAAAATCTCCATTCTTACAATGATTGAGGCACCATAAAAATGTTATCTTCAATG
* * * * * *
1273999 GGGCGCACAATATTGACTGCAATGGTTATGCAAGAAAAGCTTGTCTTGCCACTTTTTTCT
261 GGGCGCACAATATTAACTG-AATGGTTATGCAAAAAAAACCTGTCTAGCCACTTATTTCT
* * * * **
1274059 TTATATTTTGAGTTCGTATGTCATATAAAACAAATATGGATTCTTATAATAATATTCATTCTTTT
1 TTATAATTTGAGTTCATATGTCAAATAAAACAAACATGGATTCTTATAATAATATTCAGCCTTTT
* * * * *
1274124 CACT-ATTAGGCAACCAAAACAAATTCTCCTTTTTGGGATAAACGATATTAACGGTTTGATTTCA
66 C-CTGATTAGGCAACCAAAACAAATTCCCCTTATCGGGATAAACGATATCAACGCTTTGATTTCA
* * * **
1274188 TAAGAAAAGTTTTTTTCTCCACCGTTTTCCTTGGAACCAAAGTTTATACCTTAAATGAGACAAAC
130 TAAGAAAAGCTTTTTTCTCCACCGCTTTCCCTAAAACCAAAGTTTATACCTTAAATGAGACAAAC
* * * * *
1274253 ATGGATTTACACAATAATCTCCATTCTTTCAATGATT-AGGCACCATAAATATGTTATCTTTAAT
195 ATGGATCTACACAAAAATCTCCATTCTTACAATGATTGAGGCACCATAAAAATGTTATCTTCAAT
* *
1274317 GGGGTGCACAATATTAACGTG-TTGGTTATGCAAAAAAAAACCTGTTCTAGCCACTTATTTC
260 GGGGCGCACAATATTAAC-TGAATGGTTATGC-AAAAAAAACCTG-TCTAGCCACTTATTTC
1274378 CTTGAAACAA
Statistics
Matches: 273, Mismatches: 42, Indels: 8
0.85 0.13 0.02
Matches are distributed among these distances:
318 9 0.03
319 49 0.18
320 213 0.78
321 2 0.01
ACGTcount: A:0.33, C:0.18, G:0.13, T:0.35
Consensus pattern (319 bp):
TTATAATTTGAGTTCATATGTCAAATAAAACAAACATGGATTCTTATAATAATATTCAGCCTTTT
CCTGATTAGGCAACCAAAACAAATTCCCCTTATCGGGATAAACGATATCAACGCTTTGATTTCAT
AAGAAAAGCTTTTTTCTCCACCGCTTTCCCTAAAACCAAAGTTTATACCTTAAATGAGACAAACA
TGGATCTACACAAAAATCTCCATTCTTACAATGATTGAGGCACCATAAAAATGTTATCTTCAATG
GGGCGCACAATATTAACTGAATGGTTATGCAAAAAAAACCTGTCTAGCCACTTATTTCT
Found at i:1274726 original size:22 final size:22
Alignment explanation
Indices: 1274699--1274743 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
1274689 ATGTTAAATG
1274699 TGTTAGGATCTTGGTTTTGATA
1 TGTTAGGATCTTGGTTTTGATA
*
1274721 TGTTAGGATTTTGGTTTTGATA
1 TGTTAGGATCTTGGTTTTGATA
1274743 T
1 T
1274744 AACAAATCAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.18, C:0.02, G:0.27, T:0.53
Consensus pattern (22 bp):
TGTTAGGATCTTGGTTTTGATA
Found at i:1274957 original size:21 final size:21
Alignment explanation
Indices: 1274924--1274964 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
1274914 CTAACTAAAA
1274924 ATACGTATTGTATCAATACAT
1 ATACGTATTGTATCAATACAT
*
1274945 ATAC-TATTGGTATTAATACA
1 ATACGTATT-GTATCAATACA
1274965 CAAGGTTGAC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.39, C:0.12, G:0.10, T:0.39
Consensus pattern (21 bp):
ATACGTATTGTATCAATACAT
Found at i:1275127 original size:53 final size:53
Alignment explanation
Indices: 1275044--1275176 Score: 221
Period size: 53 Copynumber: 2.5 Consensus size: 53
1275034 AGATTGCATA
*
1275044 GTATCGATACACACAAATATGTATCGATACAGGACATTGGCAGTAGCCAAATTT
1 GTATCGATACACAC-AATATGTATCGATACAGGACACTGGCAGTAGCCAAATTT
*
1275098 GTATCGATACACACAATATGTATCGATACAGGTCACTGGCAGTAGCCAAATTT
1 GTATCGATACACACAATATGTATCGATACAGGACACTGGCAGTAGCCAAATTT
* *
1275151 GTATCGATACACAGACTATGTATCGA
1 GTATCGATACACACAATATGTATCGA
1275177 CACATTGGTA
Statistics
Matches: 75, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
53 61 0.81
54 14 0.19
ACGTcount: A:0.35, C:0.20, G:0.19, T:0.26
Consensus pattern (53 bp):
GTATCGATACACACAATATGTATCGATACAGGACACTGGCAGTAGCCAAATTT
Found at i:1275226 original size:10 final size:10
Alignment explanation
Indices: 1275213--1275244 Score: 55
Period size: 10 Copynumber: 3.2 Consensus size: 10
1275203 TTCACTGTTT
1275213 ATCACTATTC
1 ATCACTATTC
1275223 ATCACTATTC
1 ATCACTATTC
*
1275233 ATCACTGTTC
1 ATCACTATTC
1275243 AT
1 AT
1275245 ATATCGATAC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.28, C:0.28, G:0.03, T:0.41
Consensus pattern (10 bp):
ATCACTATTC
Found at i:1275270 original size:21 final size:22
Alignment explanation
Indices: 1275232--1275288 Score: 98
Period size: 21 Copynumber: 2.6 Consensus size: 22
1275222 CATCACTATT
1275232 CATCACTGTTCATATATCGATA
1 CATCACTGTTCATATATCGATA
*
1275254 CATCACT-TTCATGTATCGATA
1 CATCACTGTTCATATATCGATA
1275275 CATCACTGTTCATA
1 CATCACTGTTCATA
1275289 GATCACTGTT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
21 20 0.62
22 12 0.38
ACGTcount: A:0.30, C:0.25, G:0.09, T:0.37
Consensus pattern (22 bp):
CATCACTGTTCATATATCGATA
Found at i:1275305 original size:23 final size:23
Alignment explanation
Indices: 1275223--1275323 Score: 74
Period size: 21 Copynumber: 4.5 Consensus size: 23
1275213 ATCACTATTC
*
1275223 ATCACTATTCATCACTGTTCATAT
1 ATCACTATTCA-CACTGTTCATGT
1275247 ATCGA-TA--CATCACT-TTCATGT
1 ATC-ACTATTCA-CACTGTTCATGT
1275268 ATCGA-TA--CATCACTGTTCATAG-
1 ATC-ACTATTCA-CACTGTTCAT-GT
*
1275290 ATCACTGTTCACACTGTTCATGT
1 ATCACTATTCACACTGTTCATGT
1275313 ATCACTATTCA
1 ATCACTATTCA
1275324 TGTATCGTTA
Statistics
Matches: 67, Mismatches: 3, Indels: 15
0.79 0.04 0.18
Matches are distributed among these distances:
21 21 0.31
22 17 0.25
23 21 0.31
24 7 0.10
25 1 0.01
ACGTcount: A:0.29, C:0.25, G:0.09, T:0.38
Consensus pattern (23 bp):
ATCACTATTCACACTGTTCATGT
Found at i:1275375 original size:32 final size:33
Alignment explanation
Indices: 1275313--1275396 Score: 120
Period size: 32 Copynumber: 2.5 Consensus size: 33
1275303 CTGTTCATGT
1275313 ATCACTATTCATGTATCGTTAAAAATCAGTGTTC
1 ATCACTATTCATGTATCGTTAAAAATCAGTG-TC
1275347 ATCACTATTCATGTATCG-T-AAAATCAGTGTC
1 ATCACTATTCATGTATCGTTAAAAATCAGTGTC
1275378 ATCGACTA-TCAGTGTATCG
1 ATC-ACTATTCA-TGTATCG
1275397 ATACATCATA
Statistics
Matches: 48, Mismatches: 0, Indels: 6
0.89 0.00 0.11
Matches are distributed among these distances:
31 8 0.17
32 21 0.44
33 1 0.02
34 18 0.38
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (33 bp):
ATCACTATTCATGTATCGTTAAAAATCAGTGTC
Found at i:1276497 original size:13 final size:13
Alignment explanation
Indices: 1276479--1276504 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1276469 ACATTATGCT
1276479 TTGTATCGATACA
1 TTGTATCGATACA
1276492 TTGTATCGATACA
1 TTGTATCGATACA
1276505 CGTTCATTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:1276535 original size:20 final size:19
Alignment explanation
Indices: 1276489--1276545 Score: 78
Period size: 19 Copynumber: 2.9 Consensus size: 19
1276479 TTGTATCGAT
* *
1276489 ACATTGTATCGATACACGT
1 ACATTGTATCGATACATGG
*
1276508 TCATTGTATCGATACATGG
1 ACATTGTATCGATACATGG
1276527 ACAATTGTATCGATACATG
1 AC-ATTGTATCGATACATG
1276546 AAATTGACAG
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
19 17 0.52
20 16 0.48
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.33
Consensus pattern (19 bp):
ACATTGTATCGATACATGG
Found at i:1276600 original size:20 final size:20
Alignment explanation
Indices: 1276575--1276627 Score: 72
Period size: 20 Copynumber: 2.6 Consensus size: 20
1276565 CACCACTATT
*
1276575 TGTATCGATACATGGT-ACAA
1 TGTATCGATACATGATGA-AA
*
1276595 TGTATCGATACATGATGAAT
1 TGTATCGATACATGATGAAA
1276615 TGTATCGATACAT
1 TGTATCGATACAT
1276628 TGCTTGTAAC
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
20 29 0.97
21 1 0.03
ACGTcount: A:0.34, C:0.13, G:0.19, T:0.34
Consensus pattern (20 bp):
TGTATCGATACATGATGAAA
Found at i:1284136 original size:13 final size:13
Alignment explanation
Indices: 1284115--1284167 Score: 55
Period size: 13 Copynumber: 4.5 Consensus size: 13
1284105 CGATACATGG
*
1284115 TACAATGTATCGA
1 TACATTGTATCGA
1284128 TACATTGTATCGA
1 TACATTGTATCGA
1284141 TACA-TG-AT--A
1 TACATTGTATCGA
1284150 -A-ATTGTATCGA
1 TACATTGTATCGA
1284161 TACATTG
1 TACATTG
1284168 CTTGTAACGG
Statistics
Matches: 33, Mismatches: 1, Indels: 12
0.72 0.02 0.26
Matches are distributed among these distances:
7 1 0.03
8 3 0.09
9 3 0.09
11 3 0.09
12 3 0.09
13 20 0.61
ACGTcount: A:0.36, C:0.13, G:0.15, T:0.36
Consensus pattern (13 bp):
TACATTGTATCGA
Found at i:1284141 original size:33 final size:33
Alignment explanation
Indices: 1284099--1284167 Score: 113
Period size: 33 Copynumber: 2.1 Consensus size: 33
1284089 CTACCACTAT
*
1284099 TTGTATCGATACATGGTACAA-TGTATCGATACA
1 TTGTATCGATACATGATA-AATTGTATCGATACA
1284132 TTGTATCGATACATGATAAATTGTATCGATACA
1 TTGTATCGATACATGATAAATTGTATCGATACA
1284165 TTG
1 TTG
1284168 CTTGTAACGG
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
32 2 0.06
33 32 0.94
ACGTcount: A:0.33, C:0.13, G:0.17, T:0.36
Consensus pattern (33 bp):
TTGTATCGATACATGATAAATTGTATCGATACA
Found at i:1284149 original size:20 final size:20
Alignment explanation
Indices: 1284126--1284165 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
1284116 ACAATGTATC
*
1284126 GATACATTGTATCGATACAT
1 GATAAATTGTATCGATACAT
1284146 GATAAATTGTATCGATACAT
1 GATAAATTGTATCGATACAT
1284166 TGCTTGTAAC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.38, C:0.12, G:0.15, T:0.35
Consensus pattern (20 bp):
GATAAATTGTATCGATACAT
Found at i:1285234 original size:159 final size:159
Alignment explanation
Indices: 1285058--1286484 Score: 724
Period size: 159 Copynumber: 9.0 Consensus size: 159
1285048 AGATTATACC
* * * *
1285058 TTAAAAGAGACAAACATGGATTTACACAATAATCTCCATTCTTTCAATGATTGGGCACCATAAAC
1 TTAAATGAAACAAACATGGATTTACACAAAAATCTCCATTCTTTCAATGATTAGGCACCATAAAC
* * * *
1285123 ATGTTATCTTCGTTCGGATGCACAATATTGATGCATAGGTTATGCAAGAAAAGCTTTTCTTGCCA
66 ACGTTATCTTCATTGGGATGCACAATATTGATGCATTGGTTATGCAAGAAAAGCTTTTCTTGCCA
*
1285188 CGATTTTCCTTATATTTTGAGTTCACATG
131 CGATTTTCCTTATATTTTGAGTTCATATG
* * * * * * *
1285217 TTATATGAAACAAACATGGATTCT-TATAATAATTTTCATTCTTCTC-ATGATTAAGCAAACCA-
1 TTAAATGAAACAAACATGGATT-TACACAAAAATCTCCATTCTT-TCAATGATTAGGC--ACCAT
* * * * * * * * * ** *
1285279 AAACACGTTCTCCTT-TTTAGGATACACGATATTAATGCTTTGATTTTATAAGAAAAG-TTTTTT
62 AAACACGTTAT-CTTCATTGGGATGCACAATATTGATGCATTGGTTATGCAAGAAAAGCTTTTCT
* ** ** * *** * **
1285342 TCTCCACCTTTTTCCTTCGAATCAAAGTTTATACC
126 T-GCCACGATTTTCCTTATATTTTGAGTTCATATG
* * ** * * * *
1285377 TTAAATTAGATGAACATCGATTTACACAACAATCTCCATTCTTTCAATGATTGGGCACCATAGAC
1 TTAAATGAAACAAACATGGATTTACACAAAAATCTCCATTCTTTCAATGATTAGGCACCATAAAC
* * * * *
1285442 TCGTTATCTTCTTTGGGATGCACAATATTGATGCATTAGTTAGGCAAGAAAGGCTTTTCTTGCCA
66 ACGTTATCTTCATTGGGATGCACAATATTGATGCATTGGTTATGCAAGAAAAGCTTTTCTTGCCA
* * * * *
1285507 AGATTTACCTTATATTTTGGGTTCGTTTG
131 CGATTTTCCTTATATTTTGAGTTCATATG
* * * * * * * * * *
1285536 TTAAAAGAAACACAGATGGATTCT-TATAATAATCTTCATACTTTCCACGATTAGGCAACCA-AA
1 TTAAATGAAACAAACATGGATT-TACACAAAAATCTCCATTCTTTCAATGATTAGGC-ACCATAA
* * * * ** * * *
1285599 ACGCGTTCTCCTT-ATTTGGATACATGATATTAATGCTTTGATT-T-CATAAGAAAAG-TTTT-T
64 ACACGTTAT-CTTCATTGGGATGCACAATATTGATGCATTGGTTATGC--AAGAAAAGCTTTTCT
* * * *** * * **
1285659 TTCTCTACCG-TTTTCCTTAGAATAAAAGTTTACACC
126 TGC-C-A-CGATTTTCCTTATATTTTGAGTTCATATG
* * * * *
1285695 TTAAATGAGACAAACATTGATCTACGCAAAAATCTCCATTCTTTCAATGATTGGGCACCATAAAC
1 TTAAATGAAACAAACATGGATTTACACAAAAATCTCCATTCTTTCAATGATTAGGCACCATAAAC
* **
1285760 ACCTTATCTTCATTGGGATGCACAATATTGACACATTGGTTATGC-AGTAAAAGCTTTTCTTGCC
66 ACGTTATCTTCATTGGGATGCACAATATTGATGCATTGGTTATGCAAG-AAAAGCTTTTCTTGCC
* *
1285824 ATGATTTTCCTTATATTTTGAGTTCGTATG
130 ACGATTTTCCTTATATTTTGAGTTCATATG
* * *** *
1285854 TTAAATGAAACAAACATAGACTCTT--ATAAAAATCTTTGTACTTTTC-ATGATTAGGCAACCA-
1 TTAAATGAAACAAACATGGA-T-TTACACAAAAATCTCCATTC-TTTCAATGATTAGGC-ACCAT
* * ** * ** * * * *
1285915 AAACACATTGTCTTTTTTGGGATACAGGATATTAATGCTTTGATT-T-CATTAAAAAAG----TC
62 AAACACGTTATCTTCATTGGGATGCACAATATTGATGCATTGGTTATGCA--AGAAAAGCTTTTC
* * * ***
1285974 TAT---ACCATTTTCCTTAGAATAAAAG-TCTATACT-
125 T-TGCCACGATTTTCCTTATATTTTGAGTTC-ATA-TG
* * *
1286007 TTAAATGAGACAAACATGGATCTACGA-AAAAATCTCCATTCTTTCAATGACTAGGCACCATAAA
1 TTAAATGAAACAAACATGGATTTAC-ACAAAAATCTCCATTCTTTCAATGATTAGGCACCATAAA
* * * * *
1286071 CATGTTATCTTCATTGTGATGCACAATATTGATGCATTGGTTTTGCAAGAATAGCTTTTCTTACC
65 CACGTTATCTTCATTGGGATGCACAATATTGATGCATTGGTTATGCAAGAAAAGCTTTTCTTGCC
** *** *
1286136 ATTATTTAATTTATATTTTGAG-TCGTATG
130 ACGATTTTCCTTATATTTTGAGTTCATATG
* * * * * * *
1286165 TGAAATGAAACAAACATGGATTCT-TATAACAATCTTCATTTTTTCCATGATTAGGCAACCA-AA
1 TTAAATGAAACAAACATGGATT-TACACAAAAATCTCCATTCTTTCAATGATTAGGC-ACCATAA
* * ** * * * * * * *
1286228 ATGA-ATTCCCCTT-ATTTGGATACGCGATATTAATGCTTTGATT-T-CATAAGAAAAGTTCTTT
64 A-CACGTT-ATCTTCATTGGGATGCACAATATTGATGCATTGGTTATGC--AAGAAAAG--CTTT
* * * *** *
1286289 TC-T-CAATC-ATTTTCCTTAGAATAAAAGTTTATACT-
123 TCTTGCCA-CGATTTTCCTTATATTTTGAGTTCATA-TG
* * * * *
1286324 TTAAATGAGACAAACATGGATTTAC-CAAAAAATCTCCGTTATTTCTATGATTGGGCACCATAAA
1 TTAAATGAAACAAACATGGATTTACAC-AAAAATCTCCATTCTTTCAATGATTAGGCACCATAAA
* *
1286388 CACGTTATCTTTATTGGGATGCACAATATTGATGCATTTGTTATGCAAGAAAAGCTTTTCTTGCC
65 CACGTTATCTTCATTGGGATGCACAATATTGATGCATTGGTTATGCAAGAAAAGCTTTTCTTGCC
* *
1286453 ATGATTTTTCTTATATTTTGAGTTCATATG
130 ACGATTTTCCTTATATTTTGAGTTCATATG
1286483 TT
1 TT
1286485 GTTGCGATGT
Statistics
Matches: 897, Mismatches: 295, Indels: 152
0.67 0.22 0.11
Matches are distributed among these distances:
151 1 0.00
152 11 0.01
153 92 0.10
154 3 0.00
155 5 0.01
156 3 0.00
157 17 0.02
158 127 0.14
159 485 0.54
160 140 0.16
161 13 0.01
ACGTcount: A:0.32, C:0.17, G:0.14, T:0.37
Consensus pattern (159 bp):
TTAAATGAAACAAACATGGATTTACACAAAAATCTCCATTCTTTCAATGATTAGGCACCATAAAC
ACGTTATCTTCATTGGGATGCACAATATTGATGCATTGGTTATGCAAGAAAAGCTTTTCTTGCCA
CGATTTTCCTTATATTTTGAGTTCATATG
Found at i:1285557 original size:319 final size:317
Alignment explanation
Indices: 1284902--1286484 Score: 1985
Period size: 318 Copynumber: 5.0 Consensus size: 317
1284892 TGAGCTTTCA
* * * * *
1284902 AAATGAAATAAACTTGGATTCCTATAGTAATATT-ATTCTTTTCATGATTAGGCAACCAAAACAC
1 AAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTTCATGATTAGGCAACCAAAACAC
* * *
1284966 ATTCTCCTTTTTGGGATACACGATATTAATGCTTTTATTTCATAAGAAAAGTTTTTTCCTCCATC
66 ATTCTCCTTTTT-GGATACACGATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTTCTCCACC
* * * * * *
1285031 GTTTTCCTTGGAATCAAAGATTATACCTTAAAAGAGACAAACATGGATTTACACAATAATCTCCA
130 ATTTTCCTTAGAATAAAAGTTTATACCTTAAATGAGACAAACATGGATTTACACAAAAATCTCCA
* *
1285096 TTCTTTCAATGATTGGGCACCATAAACAT-GTTATCTTCGTTCGGATGCACAATATTGATGCA-T
195 TTCTTTCAATGATTGGGCACCATAAAC-TCGTTATCTTCATTGGGATGCACAATATTGATGCATT
* **
1285159 AGGTTATGCAAGAAAAGCTTTTCTTGCCACGATTTTCCTTATATTTTGAGTTCACATGTT
259 A-GTTATGCAAGAAAAGCTTTTCTTGCCATGATTTTCCTTATATTTTGAGTTCGTATGTT
* * * *
1285219 ATATGAAACAAACATGGATTCTTATAATAATTTTCATTCTTCTCATGATTAAGCAAACCAAAACA
1 AAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTTCATGATTAGGC-AACCAAAACA
* *
1285284 CGTTCTCCTTTTTAGGATACACGATATTAATGCTTTGATTTTATAAGAAAAGTTTTTTTCTCCAC
65 CATTCTCCTTTTT-GGATACACGATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTTCTCCAC
* * * * ** * *
1285349 CTTTTTCCTTCGAATCAAAGTTTATACCTTAAATTAGATGAACATCGATTTACACAACAATCTCC
129 CATTTTCCTTAGAATAAAAGTTTATACCTTAAATGAGACAAACATGGATTTACACAAAAATCTCC
* *
1285414 ATTCTTTCAATGATTGGGCACCATAGACTCGTTATCTTCTTTGGGATGCACAATATTGATGCATT
194 ATTCTTTCAATGATTGGGCACCATAAACTCGTTATCTTCATTGGGATGCACAATATTGATGCATT
* * * * * *
1285479 AGTTAGGCAAGAAAGGCTTTTCTTGCCAAGATTTACCTTATATTTTGGGTTCGTTTGTT
259 AGTTATGCAAGAAAAGCTTTTCTTGCCATGATTTTCCTTATATTTTGAGTTCGTATGTT
* * * * * * *
1285538 AAAAGAAACACAGATGGATTCTTATAATAATCTTCATACTTTCCACGATTAGGCAACCAAAACGC
1 AAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTTCATGATTAGGCAACCAAAACAC
* * *
1285603 GTTCTCCTTATTTGGATACATGATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTTCTCTACC
66 ATTCTCCTT-TTTGGATACACGATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTTCTCCACC
* * * * *
1285668 GTTTTCCTTAGAATAAAAGTTTACACCTTAAATGAGACAAACATTGATCTACGCAAAAATCTCCA
130 ATTTTCCTTAGAATAAAAGTTTATACCTTAAATGAGACAAACATGGATTTACACAAAAATCTCCA
* * ** *
1285733 TTCTTTCAATGATTGGGCACCATAAACACCTTATCTTCATTGGGATGCACAATATTGACACATTG
195 TTCTTTCAATGATTGGGCACCATAAACTCGTTATCTTCATTGGGATGCACAATATTGATGCATTA
1285798 GTTATGC-AGTAAAAGCTTTTCTTGCCATGATTTTCCTTATATTTTGAGTTCGTATGTT
260 GTTATGCAAG-AAAAGCTTTTCTTGCCATGATTTTCCTTATATTTTGAGTTCGTATGTT
* * * ** *
1285856 AAATGAAACAAACATAGACTCTTATAAAAATCTTTGTACTTTTCATGATTAGGCAACCAAAACAC
1 AAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTTCATGATTAGGCAACCAAAACAC
* * * **
1285921 ATTGTCTTTTTTGGGATACAGGATATTAATGCTTTGATTTCATTAA-AAAAG------TCTATAC
66 ATTCTCCTTTTT-GGATACACGATATTAATGCTTTGATTTCA-TAAGAAAAGTTTTTTTCTCCAC
* * *
1285979 CATTTTCCTTAGAATAAAAGTCTATACTTTAAATGAGACAAACATGGATCTACGA-AAAAATCTC
129 CATTTTCCTTAGAATAAAAGTTTATACCTTAAATGAGACAAACATGGATTTAC-ACAAAAATCTC
* * *
1286043 CATTCTTTCAATGACTAGGCACCATAAACAT-GTTATCTTCATTGTGATGCACAATATTGATGCA
193 CATTCTTTCAATGATTGGGCACCATAAAC-TCGTTATCTTCATTGGGATGCACAATATTGATGCA
* * * * * *** *
1286107 TTGGTTTTGCAAGAATAGCTTTTCTTACCATTATTTAATTTATATTTTGAG-TCGTATGTG
257 TTAGTTATGCAAGAAAAGCTTTTCTTGCCATGATTTTCCTTATATTTTGAGTTCGTATGTT
* *
1286167 AAATGAAACAAACATGGATTCTTATAACAATCTTCATT-TTTTCCATGATTAGGCAACCAAAATG
1 AAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTT-CATGATTAGGCAACCAAAA-C
* * * *
1286231 A-ATTCCCCTTATTTGGATACGCGATATTAATGCTTTGATTTCATAAGAAAAGTTCTTTTCTCAA
64 ACATTCTCCTT-TTTGGATACACGATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTTCTCCA
* *
1286295 TCATTTTCCTTAGAATAAAAGTTTATACTTTAAATGAGACAAACATGGATTTAC-CAAAAAATCT
128 CCATTTTCCTTAGAATAAAAGTTTATACCTTAAATGAGACAAACATGGATTTACAC-AAAAATCT
* * * * *
1286359 CCGTTATTTCTATGATTGGGCACCATAAACACGTTATCTTTATTGGGATGCACAATATTGATGCA
192 CCATTCTTTCAATGATTGGGCACCATAAACTCGTTATCTTCATTGGGATGCACAATATTGATGCA
* * *
1286424 TTTGTTATGCAAGAAAAGCTTTTCTTGCCATGATTTTTCTTATATTTTGAGTTCATATGTT
257 TTAGTTATGCAAGAAAAGCTTTTCTTGCCATGATTTTCCTTATATTTTGAGTTCGTATGTT
1286485 GTTGCGATGT
Statistics
Matches: 1097, Mismatches: 144, Indels: 49
0.85 0.11 0.04
Matches are distributed among these distances:
310 7 0.01
311 97 0.09
312 164 0.15
313 2 0.00
317 195 0.18
318 347 0.32
319 283 0.26
320 2 0.00
ACGTcount: A:0.32, C:0.17, G:0.13, T:0.37
Consensus pattern (317 bp):
AAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTTCATGATTAGGCAACCAAAACAC
ATTCTCCTTTTTGGATACACGATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTTCTCCACCA
TTTTCCTTAGAATAAAAGTTTATACCTTAAATGAGACAAACATGGATTTACACAAAAATCTCCAT
TCTTTCAATGATTGGGCACCATAAACTCGTTATCTTCATTGGGATGCACAATATTGATGCATTAG
TTATGCAAGAAAAGCTTTTCTTGCCATGATTTTCCTTATATTTTGAGTTCGTATGTT
Found at i:1291190 original size:633 final size:635
Alignment explanation
Indices: 1289981--1291210 Score: 2043
Period size: 633 Copynumber: 1.9 Consensus size: 635
1289971 TAAAGACCGG
*
1289981 TCCGAACAAAATGACAAAGAATGGTATTTGTAGTTTGTCATTGCAACAAGGGATGGGTGTGATCA
1 TCCGAACAAAATGACAAAGAATGGTATTTGTAGTTTGTCATTGCAACAAGGGATGGGTGCGATCA
*
1290046 TACCAGCACTAATCCACCGGATCCCAATAGAACTCCGCAGTTAAGCATGCTTGGGCGAAAGTAGT
66 TACCAGCACTAATCCACCGGATCCCAACAGAACTCCGCAGTTAAGCATGCTTGGGCGAAAGTAGT
* * ***
1290111 ACTACGATGGGTAACCTTCTGGGAAGCCGTCGTATTAAACCGCTTTTTTTTTCTCTTTTCTTTGT
131 ACTACGATGGGTAACCTCCTGGGAAGCCCTCGTATTAAACCGCTCCATTTTTCTCTTTTCTTTGT
* *
1290176 TGTATTTTTTAAAATAAGTTGAAATTAAAAGAATTAAACCCAACTAATCCAGATCTTAGAAATCT
196 TGTATTTTTTAAAACAAGTCGAAATTAAAAGAATTAAACCCAACTAATCCAGATCTTAGAAATCT
* * * *
1290241 AAATCAAAGATGGCTTGATTAGGTAACCAAAACACATTCTCCATTTTGGGATATACGATATTAAT
261 AAATCAAAAATGGCCTGATTAGGCAACCAAAACACATTATCCATTTTGGGATATACGATATTAAT
*
1290306 GCTTTGATTTCATAAGAAAAGCTTTTTTCTCCACTGCATTCCTTGGAATCAAAGTTTAAACCTTA
326 GCTTTGATTTCATAAGAAAAGCTTTTTTCTCCACCGCATTCCTTGGAATCAAAGTTTAAACCTTA
* * * *
1290371 AATGAGATAAACATGGATCTATGAAAAATCTCCATTCTTTCAATGATTAGGCACCATAAACACGT
391 AACGAGATAAACATGGATCTATGAAAAATCACCATTCTTTCAATGATTAGGCACCATAAAAACAT
* *
1290436 TATCTTTTTTGGGATGCACAGTATTGACACATAGGTTACGCAAGAAAGGCTTTTCTTCCCATGAT
456 TATCTTTTTTGGGATGCACAGTATTGACACATAGGTTACGCAAGAAAAGCTTTTCTTCCCACGAT
*
1290501 TTTCCTTATATTTTGAGTTCGTATGCTAAATGAAACAAACATGGATTTTCATAATAATCTTCATT
521 TTTCCTTATATTTTGAGTTCGTATGCTAAATGAAACAAACATAGATTTTCATAATAATCTTCATT
1290566 CTTTCCATGATCGGGGACGTATCTCCGATCTTCCACCAACTATGAATGCC
586 CTTTCCATGATCGGGGACGTATCTCCGATCTTCCACCAACTATGAATGCC
* *
1290616 TCCGAACAAAATGAGAAAGAATGGTATTTGTAGTTTGTCGTTGCAACAAGGGATGGGTGCGATCA
1 TCCGAACAAAATGACAAAGAATGGTATTTGTAGTTTGTCATTGCAACAAGGGATGGGTGCGATCA
* * * * *
1290681 TACTAGCACTAATGCACCGGATCCCAACAGAACTCCGCAGTTAAGCGTGCTTGGGCTAGAGTAGT
66 TACCAGCACTAATCCACCGGATCCCAACAGAACTCCGCAGTTAAGCATGCTTGGGCGAAAGTAGT
*
1290746 ACTACGATGGGTAACCTCCTGGGAAGCCCTCGTATTGAACC-C-CCATTTTTCTCTTGTT-TTTG
131 ACTACGATGGGTAACCTCCTGGGAAGCCCTCGTATTAAACCGCTCCATTTTTCTCTT-TTCTTTG
* *
1290808 TTGTATTTTTTTAAACAAGTCGAAATTAAAAGAATTAAATCCAACTAATCCAGATCTTAGAAATC
195 TTGTATTTTTTAAAACAAGTCGAAATTAAAAGAATTAAACCCAACTAATCCAGATCTTAGAAATC
* *
1290873 TAAATCAAAAATTGCCTGATTAGGCAACCAAAACACATTATCCATTTTGGGATATATGATATTAA
260 TAAATCAAAAATGGCCTGATTAGGCAACCAAAACACATTATCCATTTTGGGATATACGATATTAA
*
1290938 TGCTTTGATTTCATAAGAAAAGTTTTTTTCTCCACCGCATTCCTTGGAATCAAAGTTTAAACCTT
325 TGCTTTGATTTCATAAGAAAAGCTTTTTTCTCCACCGCATTCCTTGGAATCAAAGTTTAAACCTT
* *
1291003 AAACGAGATAAACATGGATCTATGCAAAATCACCATTCTTTCAATGATTGGGCACCATAAAAACA
390 AAACGAGATAAACATGGATCTATGAAAAATCACCATTCTTTCAATGATTAGGCACCATAAAAACA
* * * *
1291068 TTATTTTTTTTGGGATGCATAGTATTGACGCATAGGTTATGCAAGAAAAGCTTTTCTTCCCACGA
455 TTATCTTTTTTGGGATGCACAGTATTGACACATAGGTTACGCAAGAAAAGCTTTTCTTCCCACGA
* * *
1291133 TTTTTCTTATATTTTGAGTTCGTATGTTAAATGAAACAAACATAGATTTTTATAATAATCTTCAT
520 TTTTCCTTATATTTTGAGTTCGTATGCTAAATGAAACAAACATAGATTTTCATAATAATCTTCAT
1291198 TCTTTCCATGATC
585 TCTTTCCATGATC
1291211 AGGCAACGAA
Statistics
Matches: 551, Mismatches: 43, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
633 389 0.71
634 3 0.01
635 159 0.29
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.33
Consensus pattern (635 bp):
TCCGAACAAAATGACAAAGAATGGTATTTGTAGTTTGTCATTGCAACAAGGGATGGGTGCGATCA
TACCAGCACTAATCCACCGGATCCCAACAGAACTCCGCAGTTAAGCATGCTTGGGCGAAAGTAGT
ACTACGATGGGTAACCTCCTGGGAAGCCCTCGTATTAAACCGCTCCATTTTTCTCTTTTCTTTGT
TGTATTTTTTAAAACAAGTCGAAATTAAAAGAATTAAACCCAACTAATCCAGATCTTAGAAATCT
AAATCAAAAATGGCCTGATTAGGCAACCAAAACACATTATCCATTTTGGGATATACGATATTAAT
GCTTTGATTTCATAAGAAAAGCTTTTTTCTCCACCGCATTCCTTGGAATCAAAGTTTAAACCTTA
AACGAGATAAACATGGATCTATGAAAAATCACCATTCTTTCAATGATTAGGCACCATAAAAACAT
TATCTTTTTTGGGATGCACAGTATTGACACATAGGTTACGCAAGAAAAGCTTTTCTTCCCACGAT
TTTCCTTATATTTTGAGTTCGTATGCTAAATGAAACAAACATAGATTTTCATAATAATCTTCATT
CTTTCCATGATCGGGGACGTATCTCCGATCTTCCACCAACTATGAATGCC
Found at i:1291860 original size:317 final size:316
Alignment explanation
Indices: 1290889--1297497 Score: 8020
Period size: 318 Copynumber: 20.8 Consensus size: 316
1290879 AAAAATTGCC
* * * *
1290889 TGATTAGGCAACCAAAACACATTATCCATTTTGGGATATATGATATTAATGCTTTGATTTCATAA
1 TGATTAGGCAACCAAAACACATTCTCC-TTTTTGGATACACGATATTAATGCTTTGATTTCATAA
** * * * *
1290954 GAAAAGTTTTTTTCTCCACCGCATTCCTTGGAATCAAAGTTTAAACCTTAAACGAGATAAACATG
65 GAAAAGTTTTTTTCTCCACCGTTTTCCTTAGAATCAAAGTTTATACCTTAAATGAGACAAACATG
* * * * * **
1291019 GATCTATGC-AAAATCACCATTCTTTCAATGATTGGGCACCATAAAAACATTATTTTTTTTGGGA
130 GATCTACGCAAAAATCTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTGGGA
* * * *
1291083 TGCATAGTATTGACGCATAGGTTATGCAAGAAAAGCTTTTCTTCCCACGATTTTTCTTATATTTT
195 TGCACAATATTGACGCATTGGTTATGCAAGAAAAGCTTTTCTTGCCACGA-TTTTCTTATATTTT
* * *
1291148 GAGTTCGTATGTTAAATGAAACAAACATAGATTTTTATAATAATCTTCATTCTTTCCA
259 GAGTTCGTATGTTAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTTCA
* * * *
1291206 TGATCAGGCAACGAATAACGCATTCTCCTTATTTGTATACACGATATTAATGCTTTGATTTCATA
1 TGATTAGGCAACCAA-AACACATTCTCCTT-TTTGGATACACGATATTAATGCTTTGATTTCATA
* * *
1291271 AGAAAAGTTTTTTTCTCTACCGTTTTCCTTAGAAT-AAACGTTTATACCTTTAATGAGATAAACA
64 AGAAAAGTTTTTTTCTCCACCGTTTTCCTTAGAATCAAA-GTTTATACCTTAAATGAGACAAACA
* * * *
1291335 TGGATCTACGAAAAAAATCTCCATTCTTTCAATGATTGAGCACCATAAACATGTTATCTTTATTG
128 TGGATCTACG-CAAAAATCTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTG
* * * *
1291400 GGATACACAATATTGATGCATTGGTTGTGCAAGAAAAGCTTTTCTTGCCATGATTTTCCTTATAT
192 GGATGCACAATATTGACGCATTGGTTATGCAAGAAAAGCTTTTCTTGCCACGATTTT-CTTATAT
*
1291465 TTTGAGTTCATATGTTAAATGAAACAAACATGGATTCTTATTAA-AATCTTCATTCTTTTCA
256 TTTGAGTTCGTATGTTAAATGAAACAAACATGGATTCTTA-TAATAATCTTCATTCTTTTCA
* * *
1291526 TGATTAGGGAGCCAAAACACATTCTCCTTTTTGGTATACACAATATTAATGCTTTGATTTCATAA
1 TGATTAGGCAACCAAAACACATTCTCCTTTTTGG-ATACACGATATTAATGCTTTGATTTCATAA
* * * *
1291591 GAAAAGTGTTTTTCTCCACCGTTTTCCTTAGAACCAAAGTTTATACCCTAAAT-AGGAGAAACAT
65 GAAAAGTTTTTTTCTCCACCGTTTTCCTTAGAATCAAAGTTTATACCTTAAATGA-GACAAACAT
* * * * * *
1291655 GGATTTATGCAAACATCTCCATTCTTTCAGTGATTGGGCACTATAAACACATTATC-TCATTGGG
129 GGATCTACGCAAAAATCTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTGGG
* * *
1291719 ATGCATAATATTGTCGCATTGGTTATGCAAGAAAAGCTTTTCTCGCCACGATTTTCTATATATTT
194 ATGCACAATATTGACGCATTGGTTATGCAAGAAAAGCTTTTCTTGCCACGATTTTCT-TATATTT
* * * * * * *
1291784 TGAGTTCGTATGTTAAATGATATAAATATGAATTCTTATAATAATCTTCTTTCGTTTCT
258 TGAGTTCGTATGTTAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTTCA
* * * ** *
1291843 TGTTTAGGCAACCAAAACACATTCTCCATTTTGGGATACACGATATTAATGCTTTAATTTTGTAG
1 TGATTAGGCAACCAAAACACATTCTCC-TTTTTGGATACACGATATTAATGCTTTGATTTCATAA
* * * * *
1291908 GAAAAGTTTTTTTCTCCACCATGTTT-CTTAAAATAAAAGTTTATACCTTAAACGAGAGAAACAT
65 GAAAAGTTTTTTTCTCCACCGT-TTTCCTTAGAATCAAAGTTTATACCTTAAATGAGACAAACAT
* * * * *
1291972 GGATCTATGGC-AAAACCGCCATTCTTTCAATCATTAGGCACCATAAACACGTTATCTTCATTGG
129 GGATCTA-CGCAAAAATCTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTGG
* * *
1292036 GATGCACAATATTGACGCATTGGTTATGTAATAAAAGCTTTTCTTGCCACGATTTTCCTTATAAT
193 GATGCACAATATTGACGCATTGGTTATGCAAGAAAAGCTTTTCTTGCCACGATTTT-CTTATATT
* * * * * *
1292101 TTAACTTCATATATTAAATGAAATAAACATGGATTCTTATAATAATCTTCATTCTTTCCA
257 TTGAGTTCGTATGTTAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTTCA
* * *
1292161 TGATTAGGCAACCAAAACGCGTTCTCCTTATTTGGATACATGATATTAATGCTTTGATTTCATAA
1 TGATTAGGCAACCAAAACACATTCTCCTT-TTTGGATACACGATATTAATGCTTTGATTTCATAA
* * *
1292226 GAAAAGTTTTTTTCTCTACCGTTTTCCTTAGAATAAAAGTTTATACCTTGAATGAGACAAACATG
65 GAAAAGTTTTTTTCTCCACCGTTTTCCTTAGAATCAAAGTTTATACCTTAAATGAGACAAACATG
* * * * * * *
1292291 GATCTATGAAAAAATCCCCATTCTTTCAAAGATTGAGCACCATAAACATGTTATCTTAATTGGGA
130 GATCTACGCAAAAATCTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTGGGA
* * * * * * *
1292356 TACACAAAATTGACGCATTGGTTTTGCAAGAAAGGGTTTTCTTGCCATGATTTTCCTTATATTCT
195 TGCACAATATTGACGCATTGGTTATGCAAGAAAAGCTTTTCTTGCCACGATTTT-CTTATATTTT
* *
1292421 GAGTTCGTGTGTTAAATGAAACAAACATGGATTCTTATAAAAATCTTCATTCTTTTCA
259 GAGTTCGTATGTTAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTTCA
* * * * *
1292479 TGATTAGGCAAACAAAGCACATTCTCCTTTTTGATATACATGATATTAGTGCTTTGATTTCATAA
1 TGATTAGGCAACCAAAACACATTCTCCTTTTTG-GATACACGATATTAATGCTTTGATTTCATAA
* * * *
1292544 GAAAAGTTTTTTT-TCCACTGTTTTTCTTAGAAGCAAAGTTTATACCTTAAATGAGACAAACGTG
65 GAAAAGTTTTTTTCTCCACCGTTTTCCTTAGAATCAAAGTTTATACCTTAAATGAGACAAACATG
* * * * * * *
1292608 GATCTACGCAATAGTCTCCATTCTTTTAATGATTAGGCATCATAAACACATTATTTTCATTGGGA
130 GATCTACGCAAAAATCTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTGGGA
* * * *
1292673 TGCACAATATTGACGCATTGGTTATGCAAGAAAAACTTTCCATGCCACGATTTTCCATATATTTT
195 TGCACAATATTGACGCATTGGTTATGCAAGAAAAGCTTTTCTTGCCACGATTTT-CTTATATTTT
** * * *
1292738 GAGTTCGTATGTTAAATGAAACAAACATTTATTCTTAAAATAATCTTCCTTCTTTCCA
259 GAGTTCGTATGTTAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTTCA
* * * * * *
1292796 T-ATTTGGCCATCGAAAACACATTCTCCTTCTTGGGATACATGATATTAATGCATTGATTTCATA
1 TGATTAGG-CAACCAAAACACATTCTCCTT-TTTGGATACACGATATTAATGCTTTGATTTCATA
* * * * *
1292860 CGAAAAGTTTTTTTCTCGACCGTTTTCCTTGGAATCAAAGTTTATA-CTCTAAATAAGAGAAACA
64 AGAAAAGTTTTTTTCTCCACCGTTTTCCTTAGAATCAAAGTTTATACCT-TAAATGAGACAAACA
* * * * *
1292924 TGGATTTATGCAAAAATCTCCATTCTTTCAATGATTGGGCACCAAAAACACATTATC-TCATTAG
128 TGGATCTACGCAAAAATCTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTGG
* * * * *
1292988 GATGCACAATATTGTCACATTGGTTATGCAAGAAAAGCTTTTCGTGTCACGAGTTTCTATATATT
193 GATGCACAATATTGACGCATTGGTTATGCAAGAAAAGCTTTTCTTGCCACGATTTTCT-TATATT
* * * * ** * *
1293053 TTGACTTCATTTGTTAAATGATATGAACATGAATTCTTATAATAATCTTCATTCTTTTCT
257 TTGAGTTCGTATGTTAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTTCA
* * *
1293113 TGATTAGGCAACCAAAACACATTCTCCTTTTTGGGATACACGATATTAACGCTTTAATTTCGTAA
1 TGATTAGGCAACCAAAACACATTCTCCTTTTT-GGATACACGATATTAATGCTTTGATTTCATAA
* * * * *
1293178 GAAAAGTTTTTTTCTCCATCATTTTTCTTAGAATAAAAGTTTACACCTTAAATGAGACAAACATG
65 GAAAAGTTTTTTTCTCCACCGTTTTCCTTAGAATCAAAGTTTATACCTTAAATGAGACAAACATG
* * * *
1293243 GATCTA-GCCAAAAACCTCCATTCTTTCAATAATTGGGCACCATAAACATGTTATCTTCATTAGG
130 GATCTACG-CAAAAATCTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTGGG
* * * * * * * *
1293307 ATGCACAATATTAATGCATTGGTTATGCAATAAATGCTTTTCATACCATGATTTTTCTTATAATT
194 ATGCACAATATTGACGCATTGGTTATGCAAGAAAAGCTTTTCTTGCCACGA-TTTTCTTATATTT
* * * *
1293372 TAAGTTCGTATGTTAAATGAAACAAACAAGGATTCTTATAATAATCTTCATTGTTTCCA
258 TGAGTTCGTATGTTAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTTCA
* *
1293431 TGATTAGGCAACCAAAACGCGTTCTCCTTATTTGGATACACGATATTAATGCTTTGATTTCATAA
1 TGATTAGGCAACCAAAACACATTCTCCTT-TTTGGATACACGATATTAATGCTTTGATTTCATAA
* * * * *
1293496 GAAAAGTTTTTTTCTCTATCGTTTTCCTTAGAATTAAAGTTTATACCTTGAATGAGACAAACACG
65 GAAAAGTTTTTTTCTCCACCGTTTTCCTTAGAATCAAAGTTTATACCTTAAATGAGACAAACATG
* * *
1293561 GATCTACGAAAAAATCTCCATTCTTTCAATGATTGAGCACCATAAACATGTTATCTTCATTGGGA
130 GATCTACGCAAAAATCTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTGGGA
* * * * * * *
1293626 TACACAAAATTGAAGCATTGGCTT-TGCAAGAAATAG-TTTTCTTGCCATGATTTTCCATACATA
195 TGCACAATATTGACGCATTGG-TTATGCAAGAAA-AGCTTTTCTTGCCACGATTTT-CTTATATT
* * *
1293689 TCGAGTTCGTATATTAAATGAAA-AAACATGGATTCTTATAAAAATCTTCATTCTTTTCA
257 TTGAGTTCGTATGTTAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTTCA
1293748 TGATTAGGCAACCAAAACACATTCTCCTTTTTGGTATACACGATATTAATGCTTTGATTTCATAA
1 TGATTAGGCAACCAAAACACATTCTCCTTTTTGG-ATACACGATATTAATGCTTTGATTTCATAA
* * * * * * **
1293813 GAAAAGTTTTTTTTCTCCGCTGTTTTTCATAGAAGCAAAGTTTATAACTTAAATGAGACAAATGT
65 GAAAAG-TTTTTTTCTCCACCGTTTTCCTTAGAATCAAAGTTTATACCTTAAATGAGACAAACAT
* * * * * * *
1293878 GGACCTACGCAATAATCTCCATTCTTTTAATGATTGGGCATCATAAACACATTATTTTCGTTGGG
129 GGATCTACGCAAAAATCTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTGGG
* * * * *
1293943 ATGCACAATATTTAAGCATTGGTTATGCAAGAAAAACTTTTCATGCCACGATTTTCCATATATTT
194 ATGCACAATATTGACGCATTGGTTATGCAAGAAAAGCTTTTCTTGCCACGATTTT-CTTATATTT
** * * *
1294008 TGAGTTCGTATGTTAAATGAAACAAACATTTATTCTTAAAATAATCTTCCTTCTTTCCA
258 TGAGTTCGTATGTTAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTTCA
* * * * * *
1294067 T-ATTTGGCCATCGAAAACACATTCTCCTTCTTGGGATACACAATATTAATGCATTGATTTCATA
1 TGATTAGG-CAACCAAAACACATTCTCCTT-TTTGGATACACGATATTAATGCTTTGATTTCATA
* * * * * *
1294131 CGAAAAGTTTTTTTCTCCACCGTTTTCCTTGGAATCAAAGTTTATACCCTCAATAAGAGAAACAT
64 AGAAAAGTTTTTTTCTCCACCGTTTTCCTTAGAATCAAAGTTTATACCTTAAATGAGACAAACAT
* * * *
1294196 GGATTTATGCAAAAATCTCCATTCTTTCAATGATTGGGCACCAAAAACACGTTATC-TCATTAGG
129 GGATCTACGCAAAAATCTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTGGG
* * * **** *
1294260 ATGCACAATATTGTCACATTGGTTATACAAGAAAAGCTTTTCCCATCACGAGTTTCTATATATTT
194 ATGCACAATATTGACGCATTGGTTATGCAAGAAAAGCTTTTCTTGCCACGATTTTCT-TATATTT
* * * * * *
1294325 TGAGTTCATTTGTTAAATGATATAAACATGGATTCTTATAATAATTTTCATTCTTTTCT
258 TGAGTTCGTATGTTAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTTCA
*
1294384 TGATTAGGCAACCAAAACACATTCTCCTTTTTGGGATACACGATATTAATGCTTT-AGTTTCGTA
1 TGATTAGGCAACCAAAACACATTCTCCTTTTT-GGATACACGATATTAATGCTTTGA-TTTCATA
* * * *
1294448 AGAAAAGTTTTTTTCTCCACCATTTTTCTTAGAATAAAAGTTTACACCTTAAATGAGACAAACAT
64 AGAAAAGTTTTTTTCTCCACCGTTTTCCTTAGAATCAAAGTTTATACCTTAAATGAGACAAACAT
* * * * *
1294513 GGATCTA-GCCAAAAACCTCCATTCTTTCAATAATTAGGCACCATAAACATGTTATCTTCATTAG
129 GGATCTACG-CAAAAATCTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTGG
* * * * *
1294577 GATGCACAATATTGATGCATTGGTTATGCAATAAATGCTTTTCTTGCCATGATTTTTCTTATAAT
193 GATGCACAATATTGACGCATTGGTTATGCAAGAAAAGCTTTTCTTGCCACGA-TTTTCTTATATT
* * *
1294642 TTAAGTTCGTATGTTAAATAAAACAAACATGGATTCTTATAATAATCTTCATTCTTTCCA
257 TTGAGTTCGTATGTTAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTTCA
* ***
1294702 TGATTAGGTAACCAAAACGTGTTCTCCTTATTTGGATACACGATATTAATGCTTTGATTTCATAA
1 TGATTAGGCAACCAAAACACATTCTCCTT-TTTGGATACACGATATTAATGCTTTGATTTCATAA
* * * * *
1294767 GAAAAGTTTTTTTCTCTATCGTTTTCCTTAGAATTAACGTTTATACCTTGAATGAGACAAACATG
65 GAAAAGTTTTTTTCTCCACCGTTTTCCTTAGAATCAAAGTTTATACCTTAAATGAGACAAACATG
* * *
1294832 GATCTACGAAAAAATCTCCATTCTTTCAATGATTGAGCACCATAAACATGTTATCTTCATTGGGA
130 GATCTACGCAAAAATCTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTGGGA
* * * * * *
1294897 TACACAAAATTGAAGCATTGGCTT-TGCAAGAAATAG-TTTTCTTGCCATGATTTTCCATATATA
195 TGCACAATATTGACGCATTGG-TTATGCAAGAAA-AGCTTTTCTTGCCACGATTTT-CTTATATT
* *
1294960 TCGAGTTCGTATGTTAAATGAAA-AAACATGGATTCTTATAAAAATCTTCATTCTTTTCA
257 TTGAGTTCGTATGTTAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTTCA
*
1295019 TGATTAGGCAACCAAAACACATTCTCCTTATTGGTATACACGATATTAATGCTTTGATTTCATAA
1 TGATTAGGCAACCAAAACACATTCTCCTTTTTGG-ATACACGATATTAATGCTTTGATTTCATAA
** * * * * **
1295084 GAAAAGTTTTTTTTCTCTGCTGTTTTTCTTAGAAGCAAAGTTTATAACTTAAATGAGACAAATGT
65 GAAAAG-TTTTTTTCTCCACCGTTTTCCTTAGAATCAAAGTTTATACCTTAAATGAGACAAACAT
* * * * * *
1295149 GGACCTACGCAATAATATCCATTCTTTTAATGATTGGGC-CTTC-TAAACACATTATTTTCATTG
129 GGATCTACGCAAAAATCTCCATTCTTTCAATGATTGGGCAC--CATAAACACGTTATCTTCATTG
*
1295212 GGATGCACAATATTGACGCATTGGTTATGCAAGAAAAAGCTTTTCTTGCCACGATTTTTCATATA
192 GGATGCACAATATTGACGCATTGGTTATGCAAG-AAAAGCTTTTCTTGCCACGA-TTTTCTTATA
* * *
1295277 TTTTGAGTTCGTATGTTAAATGAAACAAACATGTATTCTTATAATAATCTTCCTTTTTTTCA
255 TTTTGAGTTCGTATGTTAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTTCA
** * * *
1295339 TGATT-GGCCGTCCAAAACACATTCTCCTTTTTGAGATACACGATTTTAATGCATTGATTTCAAA
1 TGATTAGG-CAACCAAAACACATTCTCCTTTTTG-GATACACGATATTAATGCTTTGATTTCATA
* * * *
1295403 AGAAAAGTTTTTTTCTCCACCGTTTTCCTTAGAATCAAAGTTTATACCCTATAT-AGGAGAAACT
64 AGAAAAGTTTTTTTCTCCACCGTTTTCCTTAGAATCAAAGTTTATACCTTAAATGA-GACAAACA
* * *
1295467 TGGATTTACGCAAAAATCTCCATTCTTTCAACGATTGGGCACCATAAACACATTATC-TCATTGG
128 TGGATCTACGCAAAAATCTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTGG
*
1295531 GATGCACAATATT-ATCGCATTGGTTATGCATGAAAAGCTTTTCTTGCCACGATTTTCTATATAT
193 GATGCACAATATTGA-CGCATTGGTTATGCAAGAAAAGCTTTTCTTGCCACGATTTTCT-TATAT
* * * * * * *
1295595 TTTGAGTTTGTTTGTTAAATGATATAAAGATGAATTCTTATAATAATCTTCATTCTTTTTCT
256 TTTGAGTTCGTATGTTAAATGAAACAAACATGGATTCTTATAATAATCTTCATTC-TTTTCA
* *
1295657 TGATTAGGCAACCAAAACACATTCTCCTTTTTGGGATACACAATATTAATGCTTTAATTTCATAA
1 TGATTAGGCAACCAAAACACATTCTCCTTTTT-GGATACACGATATTAATGCTTTGATTTCATAA
* *
1295722 GAAAAGTTTTTTTCTCCA-CGATTTTTCTTACAAT-AAAGTTTATACCTTAAATGAGACAAACAT
65 GAAAAGTTTTTTTCTCCACCG-TTTTCCTTAGAATCAAAGTTTATACCTTAAATGAGACAAACAT
* * *
1295785 GGATCTATGCAAAAACCTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTAGG
129 GGATCTACGCAAAAATCTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTGGG
* * * * *
1295850 ATGCACAATATTGATGCATTAGTTATGCAATAAAAGCTTTTTTTTGCCACGATTTTCCTTATAAT
194 ATGCACAATATTGACGCATTGGTTATGCAAGAAAAGC-TTTTCTTGCCACGATTTT-CTTATATT
* * *
1295915 TTAAGTTCGTATCTTAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTCCA
257 TTGAGTTCGTATGTTAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTTCA
* * * * * *
1295975 TGATTAGGTAACTAAAACGCGTTCTCCTTATTTAGATACACGATATCAATGCTTTGATTTCATAA
1 TGATTAGGCAACCAAAACACATTCTCCTT-TTTGGATACACGATATTAATGCTTTGATTTCATAA
* * ** * * * * *
1296040 GAAAA--ATTTTTCTCTACTATTTTCCTTAGAA-CAAAAGTTTATGCTTTAAAAGAGGCAAACAC
65 GAAAAGTTTTTTTCTCCACCGTTTTCCTTAGAATC-AAAGTTTATACCTTAAATGAGACAAACAT
** * * *
1296102 GGATCTACAAAAAAATCTCCATTCTTTCTATGATTGGGCACCACAAACACGTTATCTTCGTTGGG
129 GGATCTACGCAAAAATCTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTGGG
* * * *
1296167 ACGCACACTATTGACGCATTAGTTATGCAACAAAAGCTTTTCTTGCCACGATTTTGCTTATATTT
194 ATGCACAATATTGACGCATTGGTTATGCAAGAAAAGCTTTTCTTGCCACGATTTT-CTTATATTT
* * * *
1296232 TGAGTTCGTATGTTAAACGAAACAAACATGGATTCTTATAACAATCTTCATTCCTTCCA
258 TGAGTTCGTATGTTAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTTCA
* * * * *
1296291 TGATTAGGCTACCAAAACATATTCTCCTTATATGGATACACGATATTAATGCGTTGATTTCAAAA
1 TGATTAGGCAACCAAAACACATTCTCCTT-TTTGGATACACGATATTAATGCTTTGATTTCATAA
* * * * *
1296356 GAAAAG-TTTTTTCTCCACCATTTTCCTTAAAATAAAAGTTTA-ATCTTAAATGAGACAAACAAG
65 GAAAAGTTTTTTTCTCCACCGTTTTCCTTAGAATCAAAGTTTATACCTTAAATGAGACAAACATG
* * * * *
1296419 GATCTACACAAAAATCTCCATTGTTTCAATGATTGGGCACCATAAACACATTCTCTTCATTAGGA
130 GATCTACGCAAAAATCTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTGGGA
* * *
1296484 TGCACAATATTGACGCATTGTTTATGCTAGAAAAGCTTTTCTTGCCATGATTTTTCTTATATTTT
195 TGCACAATATTGACGCATTGGTTATGCAAGAAAAGCTTTTCTTGCCACGA-TTTTCTTATATTTT
* * * * * *
1296549 GAGCTCGTATATTAAATGAAACAAACATGGATTCATATAAAAATCTTTATTCTTTTCT
259 GAGTTCGTATGTTAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTTCA
* * * * *
1296607 TGATTAGGCAACCAAAACACATTCTCGATTTTGGGATACGCGATATTAATGCCTTGATTTTATAA
1 TGATTAGGCAACCAAAACACATTCTC-CTTTTTGGATACACGATATTAATGCTTTGATTTCATAA
* * *
1296672 GAAAAG--TTTTTGTCCACCATTTTCCTT-GAAATCAAAGTTTAAACCTTAAATGAGACAAACAT
65 GAAAAGTTTTTTTCTCCACCGTTTTCCTTAG-AATCAAAGTTTATACCTTAAATGAGACAAACAT
* * * *
1296734 GGATCTATGCAAAAATCTCCATTCTTTCAATGATTAGGCACCATAAACACGTTATCTTCTTTAGG
129 GGATCTACGCAAAAATCTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTGGG
** * ** * *
1296799 ATGCACTGTATTGACGCGTAAGTTATGCAAGAAAGGCTTTTCTTGCCACGATTTTCCTTATAATT
194 ATGCACAATATTGACGCATTGGTTATGCAAGAAAAGCTTTTCTTGCCACGATTTT-CTTATATTT
** *
1296864 TGAGTTTTTATGTTAAATGAAACAAACATGGATTCTTATAGA-AATCTTCATACTTTTCA
258 TGAGTTCGTATGTTAAATGAAACAAACATGGATTCTTATA-ATAATCTTCATTCTTTTCA
**
1296923 TGATTAGGCAACCAAAACACATTCTTTTTTTTAGGATACACGATATTAATGCTTTGATTTCATAA
1 TGATTAGGCAACCAAAACACATTCTCCTTTTT-GGATACACGATATTAATGCTTTGATTTCATAA
* * * * *
1296988 GAAAA-CTTTTTTCTCTACCGTTTTCCTTATAATAAAAGTTTATACTTTAAATGAGACAAACATG
65 GAAAAGTTTTTTTCTCCACCGTTTTCCTTAGAATCAAAGTTTATACCTTAAATGAGACAAACATG
* *
1297052 CATC-A-GCAAAAAAATCTCCATTCTTTCAATGATTGGGCACCATAAACATGTTATCTTCATTGG
130 GATCTACGC--AAAAATCTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTGG
* * * * *
1297115 GTTGCACAACATTGACGCATTGGTTTTGCAAGAACAA-CTGTTCTTGCCATTG-TTTTCCTTATA
193 GATGCACAATATTGACGCATTGGTTATGCAAGAA-AAGCTTTTCTTGCCA-CGATTTT-CTTATA
* * *
1297178 TTTTGAGTTCGTATGTCAAATGAAACAAACATGGATTCTTATAATAATCCTCATTCTTTCCA
255 TTTTGAGTTCGTATGTTAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTTCA
** *
1297240 TGATTAGGCAACCAAAATGCATTCTCCTTGTTTGGATGCACGATATTAATGCTTTGATTTCATAA
1 TGATTAGGCAACCAAAACACATTCTCCTT-TTTGGATACACGATATTAATGCTTTGATTTCATAA
* * * * * * *
1297305 GAAAAG-TTTTTTCTCAATCATTTTCCTCATAATAAAAGTTTATACTTTAAATGAGACAAACATG
65 GAAAAGTTTTTTTCTCCACCGTTTTCCTTAGAATCAAAGTTTATACCTTAAATGAGACAAACATG
* *
1297369 GAT-TAACGAAAAAATCTCCATTCTTTTAATGATT-GGCACCATAAACACGTTATCTTCATTGGG
130 GATCT-ACGCAAAAATCTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTGGG
* * * * *
1297432 ATGCACAATATTGATGCGTTGGTTTTGCAAGAAAAGCTTTTCTTGCCAGGGCTTTTCTTATATTT
194 ATGCACAATATTGACGCATTGGTTATGCAAGAAAAGCTTTTCTTGCCA-CGATTTTCTTATATTT
1297497 T
258 T
1297498 AGGTTTATAT
Statistics
Matches: 5386, Mismatches: 795, Indels: 223
0.84 0.12 0.03
Matches are distributed among these distances:
315 43 0.01
316 738 0.14
317 1901 0.35
318 2004 0.37
319 429 0.08
320 267 0.05
321 4 0.00
ACGTcount: A:0.32, C:0.17, G:0.13, T:0.37
Consensus pattern (316 bp):
TGATTAGGCAACCAAAACACATTCTCCTTTTTGGATACACGATATTAATGCTTTGATTTCATAAG
AAAAGTTTTTTTCTCCACCGTTTTCCTTAGAATCAAAGTTTATACCTTAAATGAGACAAACATGG
ATCTACGCAAAAATCTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTGGGAT
GCACAATATTGACGCATTGGTTATGCAAGAAAAGCTTTTCTTGCCACGATTTTCTTATATTTTGA
GTTCGTATGTTAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTTCA
Found at i:1292189 original size:635 final size:635
Alignment explanation
Indices: 1290889--1297497 Score: 8199
Period size: 635 Copynumber: 10.4 Consensus size: 635
1290879 AAAAATTGCC
* * * *
1290889 TGATTAGGCAACCAAAACACATTATCCATTTTGGGATATATGATATTAATGCTTTGATTTCATAA
1 TGATTAGGCAACCAAAACACATTCTCC-TTTTTGGATACACGATATTAATGCTTTGATTTCATAA
** * * * *
1290954 GAAAAGTTTTTTTCTCCACCGCATTCCTTGGAATCAAAGTTTAAACCTTAAACGAGATAAACATG
65 GAAAAGTTTTTTTCTCCACCGTTTTCCTTAGAATCAAAGTTTATACCTTAAATGAGACAAACATG
* * * * **
1291019 GATCTATGC-AAAATCACCATTCTTTCAATGATTGGGCACCATAAAAACATTATTTTTTTTGGGA
130 GATCTATGCAAAAATCTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTGGGA
* * * *
1291083 TGCATAGTATTGACGCATAGGTTATGCAAGAAAAGCTTTTCTTCCCACGATTTTTCT-TATATTT
195 TGCACAATATTGACGCATTGGTTATGCAAGAAAAGCTTTTCTTGCCACGA-TTTTCTATATATTT
* * * *
1291147 TGAGTTCGTATGTTAAATGAAACAAACATAGATTTTTATAATAATCTTCATTCTTTCCATGATCA
259 TGAGTTCGTATGTTAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTTCATGATTA
* * *
1291212 GGCAACGAATAACGCATTCTCCTTATTT-GTATACACGATATTAATGCTTTGATTTCATAAGAAA
324 GGCAACCAA-AACACATTCTCCTT-TTTGGGATACACGATATTAATGCTTTGATTTCATAAGAAA
* * * * * *
1291276 AGTTTTTTTCTCTACCGTTTTCCTTAGAATAAACGTTTATACCTTTAATGAGATAAACATGGATC
387 AGTTTTTTTCTCCACCATTTTTCTTAGAATAAAAGTTTATACCTTAAATGAGACAAACATGGATC
* * * * *
1291341 TACGAAAAAAATCTCCATTCTTTCAATGATTGAGCACCATAAACATGTTATCTTTATTGGGATAC
452 TACG-CAAAAATCTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTGGGATGC
* * * *
1291406 ACAATATTGATGCATTGGTTGTGCAAGAAAAGCTTTTCTTGCCATGATTTTCCTTATATTTTGAG
516 ACAATATTGACGCATTGGTTATGCAAGAAAAGCTTTTCTTGCCACGATTTTCCTTATATTTTAAG
* *
1291471 TTCATATGTTAAATGAAACAAACATGGATTCTTATTAA-AATCTTCATTCTTTTCA
581 TTCGTATGTTAAATGAAACAAACATGGATTCTTA-TAATAATCTTCATTCTTTCCA
* * *
1291526 TGATTAGGGAGCCAAAACACATTCTCCTTTTTGGTATACACAATATTAATGCTTTGATTTCATAA
1 TGATTAGGCAACCAAAACACATTCTCCTTTTTGG-ATACACGATATTAATGCTTTGATTTCATAA
* * * *
1291591 GAAAAGTGTTTTTCTCCACCGTTTTCCTTAGAACCAAAGTTTATACCCTAAAT-AGGAGAAACAT
65 GAAAAGTTTTTTTCTCCACCGTTTTCCTTAGAATCAAAGTTTATACCTTAAATGA-GACAAACAT
* * * * *
1291655 GGATTTATGCAAACATCTCCATTCTTTCAGTGATTGGGCACTATAAACACATTATC-TCATTGGG
129 GGATCTATGCAAAAATCTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTGGG
* * *
1291719 ATGCATAATATTGTCGCATTGGTTATGCAAGAAAAGCTTTTCTCGCCACGATTTTCTATATATTT
194 ATGCACAATATTGACGCATTGGTTATGCAAGAAAAGCTTTTCTTGCCACGATTTTCTATATATTT
* * * * * * * *
1291784 TGAGTTCGTATGTTAAATGATATAAATATGAATTCTTATAATAATCTTCTTTCGTTTCTTGTTTA
259 TGAGTTCGTATGTTAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTTCATGATTA
* * ** *
1291849 GGCAACCAAAACACATTCTCCATTTTGGGATACACGATATTAATGCTTTAATTTTGTAGGAAAAG
324 GGCAACCAAAACACATTCTCCTTTTTGGGATACACGATATTAATGCTTTGATTTCATAAGAAAAG
* * * *
1291914 TTTTTTTCTCCACCATGTTTCTTAAAATAAAAGTTTATACCTTAAACGAGAGAAACATGGATCTA
389 TTTTTTTCTCCACCATTTTTCTTAGAATAAAAGTTTATACCTTAAATGAGACAAACATGGATCTA
* * * * *
1291979 TGGC-AAAACCGCCATTCTTTCAATCATTAGGCACCATAAACACGTTATCTTCATTGGGATGCAC
454 -CGCAAAAATCTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTGGGATGCAC
* * * *
1292043 AATATTGACGCATTGGTTATGTAATAAAAGCTTTTCTTGCCACGATTTTCCTTATAATTTAACTT
518 AATATTGACGCATTGGTTATGCAAGAAAAGCTTTTCTTGCCACGATTTTCCTTATATTTTAAGTT
* * *
1292108 CATATATTAAATGAAATAAACATGGATTCTTATAATAATCTTCATTCTTTCCA
583 CGTATGTTAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTCCA
* * *
1292161 TGATTAGGCAACCAAAACGCGTTCTCCTTATTTGGATACATGATATTAATGCTTTGATTTCATAA
1 TGATTAGGCAACCAAAACACATTCTCCTT-TTTGGATACACGATATTAATGCTTTGATTTCATAA
* * *
1292226 GAAAAGTTTTTTTCTCTACCGTTTTCCTTAGAATAAAAGTTTATACCTTGAATGAGACAAACATG
65 GAAAAGTTTTTTTCTCCACCGTTTTCCTTAGAATCAAAGTTTATACCTTAAATGAGACAAACATG
* * * * * *
1292291 GATCTATGAAAAAATCCCCATTCTTTCAAAGATTGAGCACCATAAACATGTTATCTTAATTGGGA
130 GATCTATGCAAAAATCTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTGGGA
* * * * * * *
1292356 TACACAAAATTGACGCATTGGTTTTGCAAGAAAGGGTTTTCTTGCCATGATTTTCCT-TATATTC
195 TGCACAATATTGACGCATTGGTTATGCAAGAAAAGCTTTTCTTGCCACGATTTT-CTATATATTT
* *
1292420 TGAGTTCGTGTGTTAAATGAAACAAACATGGATTCTTATAAAAATCTTCATTCTTTTCATGATTA
259 TGAGTTCGTATGTTAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTTCATGATTA
* * ** * *
1292485 GGCAAACAAAGCACATTCTCCTTTTTGATATACATGATATTAGTGCTTTGATTTCATAAGAAAAG
324 GGCAACCAAAACACATTCTCCTTTTTGGGATACACGATATTAATGCTTTGATTTCATAAGAAAAG
** ** *
1292550 TTTTTTT-TCCACTGTTTTTCTTAGAAGCAAAGTTTATACCTTAAATGAGACAAACGTGGATCTA
389 TTTTTTTCTCCACCATTTTTCTTAGAATAAAAGTTTATACCTTAAATGAGACAAACATGGATCTA
* * * * * * *
1292614 CGCAATAGTCTCCATTCTTTTAATGATTAGGCATCATAAACACATTATTTTCATTGGGATGCACA
454 CGCAAAAATCTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTGGGATGCACA
* * * * *
1292679 ATATTGACGCATTGGTTATGCAAGAAAAACTTTCCATGCCACGATTTTCCATATATTTTGAGTTC
519 ATATTGACGCATTGGTTATGCAAGAAAAGCTTTTCTTGCCACGATTTTCCTTATATTTTAAGTTC
** * *
1292744 GTATGTTAAATGAAACAAACATTTATTCTTAAAATAATCTTCCTTCTTTCCA
584 GTATGTTAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTCCA
* * * * * *
1292796 T-ATTTGGCCATCGAAAACACATTCTCCTTCTTGGGATACATGATATTAATGCATTGATTTCATA
1 TGATTAGG-CAACCAAAACACATTCTCCTT-TTTGGATACACGATATTAATGCTTTGATTTCATA
* * * * *
1292860 CGAAAAGTTTTTTTCTCGACCGTTTTCCTTGGAATCAAAGTTTATA-CTCTAAATAAGAGAAACA
64 AGAAAAGTTTTTTTCTCCACCGTTTTCCTTAGAATCAAAGTTTATACCT-TAAATGAGACAAACA
* * * *
1292924 TGGATTTATGCAAAAATCTCCATTCTTTCAATGATTGGGCACCAAAAACACATTATC-TCATTAG
128 TGGATCTATGCAAAAATCTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTGG
* * * * *
1292988 GATGCACAATATTGTCACATTGGTTATGCAAGAAAAGCTTTTCGTGTCACGAGTTTCTATATATT
193 GATGCACAATATTGACGCATTGGTTATGCAAGAAAAGCTTTTCTTGCCACGATTTTCTATATATT
* * * * ** * *
1293053 TTGACTTCATTTGTTAAATGATATGAACATGAATTCTTATAATAATCTTCATTCTTTTCTTGATT
258 TTGAGTTCGTATGTTAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTTCATGATT
* * *
1293118 AGGCAACCAAAACACATTCTCCTTTTTGGGATACACGATATTAACGCTTTAATTTCGTAAGAAAA
323 AGGCAACCAAAACACATTCTCCTTTTTGGGATACACGATATTAATGCTTTGATTTCATAAGAAAA
* *
1293183 GTTTTTTTCTCCATCATTTTTCTTAGAATAAAAGTTTACACCTTAAATGAGACAAACATGGATCT
388 GTTTTTTTCTCCACCATTTTTCTTAGAATAAAAGTTTATACCTTAAATGAGACAAACATGGATCT
* * * *
1293248 A-GCCAAAAACCTCCATTCTTTCAATAATTGGGCACCATAAACATGTTATCTTCATTAGGATGCA
453 ACG-CAAAAATCTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTGGGATGCA
* * * * * * * * *
1293312 CAATATTAATGCATTGGTTATGCAATAAATGCTTTTCATACCATGATTTTTCTTATAATTTAAGT
517 CAATATTGACGCATTGGTTATGCAAGAAAAGCTTTTCTTGCCACGATTTTCCTTATATTTTAAGT
* *
1293377 TCGTATGTTAAATGAAACAAACAAGGATTCTTATAATAATCTTCATTGTTTCCA
582 TCGTATGTTAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTCCA
* *
1293431 TGATTAGGCAACCAAAACGCGTTCTCCTTATTTGGATACACGATATTAATGCTTTGATTTCATAA
1 TGATTAGGCAACCAAAACACATTCTCCTT-TTTGGATACACGATATTAATGCTTTGATTTCATAA
* * * * *
1293496 GAAAAGTTTTTTTCTCTATCGTTTTCCTTAGAATTAAAGTTTATACCTTGAATGAGACAAACACG
65 GAAAAGTTTTTTTCTCCACCGTTTTCCTTAGAATCAAAGTTTATACCTTAAATGAGACAAACATG
* * * *
1293561 GATCTACGAAAAAATCTCCATTCTTTCAATGATTGAGCACCATAAACATGTTATCTTCATTGGGA
130 GATCTATGCAAAAATCTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTGGGA
* * * * * * *
1293626 TACACAAAATTGAAGCATTGGCTT-TGCAAGAAATAG-TTTTCTTGCCATGATTTTCCATACATA
195 TGCACAATATTGACGCATTGG-TTATGCAAGAAA-AGCTTTTCTTGCCACGATTTTCTATATATT
* * *
1293689 TCGAGTTCGTATATTAAATGAAA-AAACATGGATTCTTATAAAAATCTTCATTCTTTTCATGATT
258 TTGAGTTCGTATGTTAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTTCATGATT
*
1293753 AGGCAACCAAAACACATTCTCCTTTTTGGTATACACGATATTAATGCTTTGATTTCATAAGAAAA
323 AGGCAACCAAAACACATTCTCCTTTTTGGGATACACGATATTAATGCTTTGATTTCATAAGAAAA
* ** * ** * ** *
1293818 GTTTTTTTTCTCCGCTGTTTTTCATAGAAGCAAAGTTTATAACTTAAATGAGACAAATGTGGACC
388 G-TTTTTTTCTCCACCATTTTTCTTAGAATAAAAGTTTATACCTTAAATGAGACAAACATGGATC
* * * * * *
1293883 TACGCAATAATCTCCATTCTTTTAATGATTGGGCATCATAAACACATTATTTTCGTTGGGATGCA
452 TACGCAAAAATCTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTGGGATGCA
* * * * * *
1293948 CAATATTTAAGCATTGGTTATGCAAGAAAAACTTTTCATGCCACGATTTTCCATATATTTTGAGT
517 CAATATTGACGCATTGGTTATGCAAGAAAAGCTTTTCTTGCCACGATTTTCCTTATATTTTAAGT
** * *
1294013 TCGTATGTTAAATGAAACAAACATTTATTCTTAAAATAATCTTCCTTCTTTCCA
582 TCGTATGTTAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTCCA
* * * * * *
1294067 T-ATTTGGCCATCGAAAACACATTCTCCTTCTTGGGATACACAATATTAATGCATTGATTTCATA
1 TGATTAGG-CAACCAAAACACATTCTCCTT-TTTGGATACACGATATTAATGCTTTGATTTCATA
* * * * * *
1294131 CGAAAAGTTTTTTTCTCCACCGTTTTCCTTGGAATCAAAGTTTATACCCTCAATAAGAGAAACAT
64 AGAAAAGTTTTTTTCTCCACCGTTTTCCTTAGAATCAAAGTTTATACCTTAAATGAGACAAACAT
* * *
1294196 GGATTTATGCAAAAATCTCCATTCTTTCAATGATTGGGCACCAAAAACACGTTATC-TCATTAGG
129 GGATCTATGCAAAAATCTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTGGG
* * * **** *
1294260 ATGCACAATATTGTCACATTGGTTATACAAGAAAAGCTTTTCCCATCACGAGTTTCTATATATTT
194 ATGCACAATATTGACGCATTGGTTATGCAAGAAAAGCTTTTCTTGCCACGATTTTCTATATATTT
* * * * * *
1294325 TGAGTTCATTTGTTAAATGATATAAACATGGATTCTTATAATAATTTTCATTCTTTTCTTGATTA
259 TGAGTTCGTATGTTAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTTCATGATTA
*
1294390 GGCAACCAAAACACATTCTCCTTTTTGGGATACACGATATTAATGCTTT-AGTTTCGTAAGAAAA
324 GGCAACCAAAACACATTCTCCTTTTTGGGATACACGATATTAATGCTTTGA-TTTCATAAGAAAA
*
1294454 GTTTTTTTCTCCACCATTTTTCTTAGAATAAAAGTTTACACCTTAAATGAGACAAACATGGATCT
388 GTTTTTTTCTCCACCATTTTTCTTAGAATAAAAGTTTATACCTTAAATGAGACAAACATGGATCT
* * * * *
1294519 A-GCCAAAAACCTCCATTCTTTCAATAATTAGGCACCATAAACATGTTATCTTCATTAGGATGCA
453 ACG-CAAAAATCTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTGGGATGCA
* * * * * *
1294583 CAATATTGATGCATTGGTTATGCAATAAATGCTTTTCTTGCCATGATTTTTCTTATAATTTAAGT
517 CAATATTGACGCATTGGTTATGCAAGAAAAGCTTTTCTTGCCACGATTTTCCTTATATTTTAAGT
*
1294648 TCGTATGTTAAATAAAACAAACATGGATTCTTATAATAATCTTCATTCTTTCCA
582 TCGTATGTTAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTCCA
* ***
1294702 TGATTAGGTAACCAAAACGTGTTCTCCTTATTTGGATACACGATATTAATGCTTTGATTTCATAA
1 TGATTAGGCAACCAAAACACATTCTCCTT-TTTGGATACACGATATTAATGCTTTGATTTCATAA
* * * * *
1294767 GAAAAGTTTTTTTCTCTATCGTTTTCCTTAGAATTAACGTTTATACCTTGAATGAGACAAACATG
65 GAAAAGTTTTTTTCTCCACCGTTTTCCTTAGAATCAAAGTTTATACCTTAAATGAGACAAACATG
* * * *
1294832 GATCTACGAAAAAATCTCCATTCTTTCAATGATTGAGCACCATAAACATGTTATCTTCATTGGGA
130 GATCTATGCAAAAATCTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTGGGA
* * * * * *
1294897 TACACAAAATTGAAGCATTGGCTT-TGCAAGAAATAG-TTTTCTTGCCATGATTTTCCATATATA
195 TGCACAATATTGACGCATTGG-TTATGCAAGAAA-AGCTTTTCTTGCCACGATTTTCTATATATT
* *
1294960 TCGAGTTCGTATGTTAAATGAAA-AAACATGGATTCTTATAAAAATCTTCATTCTTTTCATGATT
258 TTGAGTTCGTATGTTAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTTCATGATT
* *
1295024 AGGCAACCAAAACACATTCTCCTTATTGGTATACACGATATTAATGCTTTGATTTCATAAGAAAA
323 AGGCAACCAAAACACATTCTCCTTTTTGGGATACACGATATTAATGCTTTGATTTCATAAGAAAA
** ** ** * ** *
1295089 GTTTTTTTTCTCTGCTGTTTTTCTTAGAAGCAAAGTTTATAACTTAAATGAGACAAATGTGGACC
388 G-TTTTTTTCTCCACCATTTTTCTTAGAATAAAAGTTTATACCTTAAATGAGACAAACATGGATC
* * * * *
1295154 TACGCAATAATATCCATTCTTTTAATGATTGGGC-CTTC-TAAACACATTATTTTCATTGGGATG
452 TACGCAAAAATCTCCATTCTTTCAATGATTGGGCAC--CATAAACACGTTATCTTCATTGGGATG
* * *
1295217 CACAATATTGACGCATTGGTTATGCAAGAAAAAGCTTTTCTTGCCACGATTTTTCATATATTTTG
515 CACAATATTGACGCATTGGTTATGCAAG-AAAAGCTTTTCTTGCCACGATTTTCCTTATATTTTA
* * * *
1295282 AGTTCGTATGTTAAATGAAACAAACATGTATTCTTATAATAATCTTCCTTTTTTTCA
579 AGTTCGTATGTTAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTCCA
** * * *
1295339 TGATT-GGCCGTCCAAAACACATTCTCCTTTTTGAGATACACGATTTTAATGCATTGATTTCAAA
1 TGATTAGG-CAACCAAAACACATTCTCCTTTTTG-GATACACGATATTAATGCTTTGATTTCATA
* * * *
1295403 AGAAAAGTTTTTTTCTCCACCGTTTTCCTTAGAATCAAAGTTTATACCCTATAT-AGGAGAAACT
64 AGAAAAGTTTTTTTCTCCACCGTTTTCCTTAGAATCAAAGTTTATACCTTAAATGA-GACAAACA
* * * *
1295467 TGGATTTACGCAAAAATCTCCATTCTTTCAACGATTGGGCACCATAAACACATTATC-TCATTGG
128 TGGATCTATGCAAAAATCTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTGG
*
1295531 GATGCACAATATT-ATCGCATTGGTTATGCATGAAAAGCTTTTCTTGCCACGATTTTCTATATAT
193 GATGCACAATATTGA-CGCATTGGTTATGCAAGAAAAGCTTTTCTTGCCACGATTTTCTATATAT
* * * * * * *
1295595 TTTGAGTTTGTTTGTTAAATGATATAAAGATGAATTCTTATAATAATCTTCATTCTTTTTCTTGA
257 TTTGAGTTCGTATGTTAAATGAAACAAACATGGATTCTTATAATAATCTTCATTC-TTTTCATGA
* *
1295660 TTAGGCAACCAAAACACATTCTCCTTTTTGGGATACACAATATTAATGCTTTAATTTCATAAGAA
321 TTAGGCAACCAAAACACATTCTCCTTTTTGGGATACACGATATTAATGCTTTGATTTCATAAGAA
* *
1295725 AAGTTTTTTTCTCCACGATTTTTCTTACAAT-AAAGTTTATACCTTAAATGAGACAAACATGGAT
386 AAGTTTTTTTCTCCACCATTTTTCTTAGAATAAAAGTTTATACCTTAAATGAGACAAACATGGAT
* * *
1295789 CTATGCAAAAACCTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTAGGATGC
451 CTACGCAAAAATCTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTGGGATGC
* * * * *
1295854 ACAATATTGATGCATTAGTTATGCAATAAAAGCTTTTTTTTGCCACGATTTTCCTTATAATTTAA
516 ACAATATTGACGCATTGGTTATGCAAGAAAAGC-TTTTCTTGCCACGATTTTCCTTATATTTTAA
*
1295919 GTTCGTATCTTAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTCCA
580 GTTCGTATGTTAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTCCA
* * * * * *
1295975 TGATTAGGTAACTAAAACGCGTTCTCCTTATTTAGATACACGATATCAATGCTTTGATTTCATAA
1 TGATTAGGCAACCAAAACACATTCTCCTT-TTTGGATACACGATATTAATGCTTTGATTTCATAA
* * ** * * * * *
1296040 GAAAA--ATTTTTCTCTACTATTTTCCTTAGAA-CAAAAGTTTATGCTTTAAAAGAGGCAAACAC
65 GAAAAGTTTTTTTCTCCACCGTTTTCCTTAGAATC-AAAGTTTATACCTTAAATGAGACAAACAT
*** * * *
1296102 GGATCTACAAAAAAATCTCCATTCTTTCTATGATTGGGCACCACAAACACGTTATCTTCGTTGGG
129 GGATCTATGCAAAAATCTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTGGG
* * * *
1296167 ACGCACACTATTGACGCATTAGTTATGCAACAAAAGCTTTTCTTGCCACGATTTTGCT-TATATT
194 ATGCACAATATTGACGCATTGGTTATGCAAGAAAAGCTTTTCTTGCCACGATTTT-CTATATATT
* * * *
1296231 TTGAGTTCGTATGTTAAACGAAACAAACATGGATTCTTATAACAATCTTCATTCCTTCCATGATT
258 TTGAGTTCGTATGTTAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTTCATGATT
* * * * *
1296296 AGGCTACCAAAACATATTCTCCTTATAT-GGATACACGATATTAATGCGTTGATTTCAAAAGAAA
323 AGGCAACCAAAACACATTCTCCTT-TTTGGGATACACGATATTAATGCTTTGATTTCATAAGAAA
* * * *
1296360 AG-TTTTTTCTCCACCATTTTCCTTAAAATAAAAGTTTA-ATCTTAAATGAGACAAACAAGGATC
387 AGTTTTTTTCTCCACCATTTTTCTTAGAATAAAAGTTTATACCTTAAATGAGACAAACATGGATC
* * * * *
1296423 TACACAAAAATCTCCATTGTTTCAATGATTGGGCACCATAAACACATTCTCTTCATTAGGATGCA
452 TACGCAAAAATCTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTGGGATGCA
* * * * * *
1296488 CAATATTGACGCATTGTTTATGCTAGAAAAGCTTTTCTTGCCATGATTTTTCTTATATTTTGAGC
517 CAATATTGACGCATTGGTTATGCAAGAAAAGCTTTTCTTGCCACGATTTTCCTTATATTTTAAGT
* * * * * *
1296553 TCGTATATTAAATGAAACAAACATGGATTCATATAAAAATCTTTATTCTTTTCT
582 TCGTATGTTAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTCCA
* * * * *
1296607 TGATTAGGCAACCAAAACACATTCTCGATTTTGGGATACGCGATATTAATGCCTTGATTTTATAA
1 TGATTAGGCAACCAAAACACATTCTC-CTTTTTGGATACACGATATTAATGCTTTGATTTCATAA
* * *
1296672 GAAAAG--TTTTTGTCCACCATTTTCCTT-GAAATCAAAGTTTAAACCTTAAATGAGACAAACAT
65 GAAAAGTTTTTTTCTCCACCGTTTTCCTTAG-AATCAAAGTTTATACCTTAAATGAGACAAACAT
* * *
1296734 GGATCTATGCAAAAATCTCCATTCTTTCAATGATTAGGCACCATAAACACGTTATCTTCTTTAGG
129 GGATCTATGCAAAAATCTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTGGG
** * ** * *
1296799 ATGCACTGTATTGACGCGTAAGTTATGCAAGAAAGGCTTTTCTTGCCACGATTTTCCT-TATAAT
194 ATGCACAATATTGACGCATTGGTTATGCAAGAAAAGCTTTTCTTGCCACGATTTT-CTATATATT
** *
1296863 TTGAGTTTTTATGTTAAATGAAACAAACATGGATTCTTATAGA-AATCTTCATACTTTTCATGAT
258 TTGAGTTCGTATGTTAAATGAAACAAACATGGATTCTTATA-ATAATCTTCATTCTTTTCATGAT
** *
1296927 TAGGCAACCAAAACACATTCTTTTTTTTAGGATACACGATATTAATGCTTTGATTTCATAAGAAA
322 TAGGCAACCAAAACACATTCTCCTTTTTGGGATACACGATATTAATGCTTTGATTTCATAAGAAA
* * * * * * *
1296992 A-CTTTTTTCTCTACCGTTTTCCTTATAATAAAAGTTTATACTTTAAATGAGACAAACATGCATC
387 AGTTTTTTTCTCCACCATTTTTCTTAGAATAAAAGTTTATACCTTAAATGAGACAAACATGGATC
* *
1297056 -A-GCAAAAAAATCTCCATTCTTTCAATGATTGGGCACCATAAACATGTTATCTTCATTGGGTTG
452 TACGC--AAAAATCTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTGGGATG
* * * *
1297119 CACAACATTGACGCATTGGTTTTGCAAGAACAA-CTGTTCTTGCCATTG-TTTTCCTTATATTTT
515 CACAATATTGACGCATTGGTTATGCAAGAA-AAGCTTTTCTTGCCA-CGATTTTCCTTATATTTT
* * *
1297182 GAGTTCGTATGTCAAATGAAACAAACATGGATTCTTATAATAATCCTCATTCTTTCCA
578 AAGTTCGTATGTTAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTCCA
** *
1297240 TGATTAGGCAACCAAAATGCATTCTCCTTGTTTGGATGCACGATATTAATGCTTTGATTTCATAA
1 TGATTAGGCAACCAAAACACATTCTCCTT-TTTGGATACACGATATTAATGCTTTGATTTCATAA
* * * * * * *
1297305 GAAAAG-TTTTTTCTCAATCATTTTCCTCATAATAAAAGTTTATACTTTAAATGAGACAAACATG
65 GAAAAGTTTTTTTCTCCACCGTTTTCCTTAGAATCAAAGTTTATACCTTAAATGAGACAAACATG
* * *
1297369 GAT-TAACGAAAAAATCTCCATTCTTTTAATGATT-GGCACCATAAACACGTTATCTTCATTGGG
130 GATCT-ATGCAAAAATCTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTGGG
* * * * *
1297432 ATGCACAATATTGATGCGTTGGTTTTGCAAGAAAAGCTTTTCTTGCCAGGGCTTTTCT-TATATT
194 ATGCACAATATTGACGCATTGGTTATGCAAGAAAAGCTTTTCTTGCCA-CGATTTTCTATATATT
1297496 TT
258 TT
1297498 AGGTTTATAT
Statistics
Matches: 5102, Mismatches: 793, Indels: 158
0.84 0.13 0.03
Matches are distributed among these distances:
631 4 0.00
632 434 0.09
633 451 0.09
634 440 0.09
635 1772 0.35
636 1354 0.27
637 536 0.11
638 111 0.02
ACGTcount: A:0.32, C:0.17, G:0.13, T:0.37
Consensus pattern (635 bp):
TGATTAGGCAACCAAAACACATTCTCCTTTTTGGATACACGATATTAATGCTTTGATTTCATAAG
AAAAGTTTTTTTCTCCACCGTTTTCCTTAGAATCAAAGTTTATACCTTAAATGAGACAAACATGG
ATCTATGCAAAAATCTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTGGGAT
GCACAATATTGACGCATTGGTTATGCAAGAAAAGCTTTTCTTGCCACGATTTTCTATATATTTTG
AGTTCGTATGTTAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTTCATGATTAGG
CAACCAAAACACATTCTCCTTTTTGGGATACACGATATTAATGCTTTGATTTCATAAGAAAAGTT
TTTTTCTCCACCATTTTTCTTAGAATAAAAGTTTATACCTTAAATGAGACAAACATGGATCTACG
CAAAAATCTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTGGGATGCACAAT
ATTGACGCATTGGTTATGCAAGAAAAGCTTTTCTTGCCACGATTTTCCTTATATTTTAAGTTCGT
ATGTTAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTCCA
Found at i:1301902 original size:316 final size:317
Alignment explanation
Indices: 1301311--1305115 Score: 4578
Period size: 318 Copynumber: 12.0 Consensus size: 317
1301301 GGTGTCTACA
* * * *
1301311 TATGTTAAAAGAAACAAACATGGATTCTTATAAAAATATTCATTCTTTCCATGATTAGGCAACCA
1 TATGTTAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTTCATGATTAGGCAACCA
* *
1301376 AAACACATTCTCCATTTTGGGATAAACGATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTTC
66 AAACACATTCTCC-TTTTTGGATACACGATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTTC
* * * * * * * * *
1301441 TCCACCATTTTCCTTGGAATCAAAGTTTAAACCTTAAATGAGATAAAAAAGGATCTATG-CAAAA
130 TCCACCGTTTTCCTTAGAATAAAAGTTTATACCTTAAATGAGACAAACATGGATCTACGAAAAAA
* * * * *
1301505 TCTCCATTCTTTCAATGAATGGGAACCATAAACAAGTTATCTTCTTTGGGATGCACAGTATTGAC
195 TCTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTGGGATGCACAATATTGAC
* * * * * *
1301570 GTATAGGCTATGCAAGAAAGGCTTTTCTTCCCATGATTTTCCTTATATTTAGAGTTCG
260 GCATTGGTTATGCAAGAAAAGCTTTTCTTGCCATGATTTTCCTTATATTTTGAGTTCG
* *
1301628 TATGTTAAATGAAACAAACAGGGATTCTTATAATAATCTTCATTCTTTCCATGATTAGGC-ACCA
1 TATGTTAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTTCATGATTAGGCAACCA
*
1301692 AAACACGTTCTCCTTATTTGGATACACGATATTAATGCTTTGATTTCATAAGAAAAG-TTTTTTC
66 AAACACATTCTCCTT-TTTGGATACACGATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTTC
* * *
1301756 TCCACCATTTTCCTTAGAATAAAAGTTTATACCTTGAATGAGACAAACCTGGATCTACGAAAAAA
130 TCCACCGTTTTCCTTAGAATAAAAGTTTATACCTTAAATGAGACAAACATGGATCTACGAAAAAA
** * * * *
1301821 TCTCCATTCTTTCAATGATTAAGCACCATAAACATGTTATCTTCATTGGGATACACAAAATGGAC
195 TCTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTGGGATGCACAATATTGAC
* * *
1301886 ACATTGGTTTTGCAAGAAAAGCTTTTCTTGCCAAGATTTTCCTTATATTTTGAGTTC-
260 GCATTGGTTATGCAAGAAAAGCTTTTCTTGCCATGATTTTCCTTATATTTTGAGTTCG
* * *
1301943 ---G-T--ATGAAACAAACATGAATTCTTATAGA-AATCTTCATTCTTTACATTATTAGGCAACC
1 TATGTTAAATGAAACAAACATGGATTCTTATA-ATAATCTTCATTCTTTTCATGATTAGGCAACC
* * * * * *
1302001 AACACACATTCTCCTTTTTAGTATACGCAATATTAATGCTTTGATTTTATAAGAAATGTTTTTTT
65 AAAACACATTCTCCTTTTT-GGATACACGATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTT
** * ** * ** *
1302066 CTCCATTGTTTTTCTTAGAAGCAAAGTTTATACCGTAAATGAGACAAATGTGGATCTAC-ACAAT
129 CTCCACCGTTTTCCTTAGAATAAAAGTTTATACCTTAAATGAGACAAACATGGATCTACGA-AAA
* * * * * * * *
1302130 AATCTCCATTCTTTTAACGATTGAGCATCGTAAACACATTATTTTCATTAGGATGCACAATATTG
193 AATCTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTGGGATGCACAATATTG
* * *
1302195 ATGCATTGGTTATGCAAGAAAAGCTTTTCTTGCCATGATATTCCATATATTTTGAGTTCG
258 ACGCATTGGTTATGCAAGAAAAGCTTTTCTTGCCATGATTTTCCTTATATTTTGAGTTCG
* * * * * *
1302255 TAGGTTAAATGAAATAAACATGTATTCTTATAATAATCTTCCTTCTTTTCATAATT-GGCCATCC
1 TATGTTAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTTCATGATTAGG-CAACC
* * * * *
1302319 AAAACACATTCTCCTTTTTGGGGTACACGATATTCATTCATTAATTTCATAAGAAAAGTTTTTTT
65 AAAACACATTCTCCTTTTT-GGATACACGATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTT
* * * * * * * * * *
1302384 CTCCACCGTTTTCCTTGGAATTAAAGTTCATCCCCTAAATAAGAGAAACAAGGATTTACG-CAAA
129 CTCCACCGTTTTCCTTAGAATAAAAGTTTATACCTTAAATGAGACAAACATGGATCTACGAAAAA
* *
1302448 ATCTCCATTCTTTCAATGATTGGGCACCATAAACACATTATC-TCATTGGGATGCACAATATTGT
194 ATCTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTGGGATGCACAATATTGA
* ** * *
1302512 CGCATTGGTTATGCAAGAAATGCACTTCTTGCCAAGATTTT-CTATATATTTTGAGTTTG
259 CGCATTGGTTATGCAAGAAAAGCTTTTCTTGCCATGATTTTCCT-TATATTTTGAGTTCG
* * * * * *
1302571 TATGTTAAATGATATAAACATGAATTCTTATAATAATCTTCATTATTTTCTTGATTAGGCAGCCA
1 TATGTTAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTTCATGATTAGGCAACCA
* * **
1302636 AAACACATTCTCCTTTCTGGGATACACGATATTAATGCTTTAATTTTGTAAGAAAAGTTTTTTTC
66 AAACACATTCTCCTTT-TTGGATACACGATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTTC
* * *
1302701 TCCACCGTTTTTCC-TAGAATAAAAGTTTATACCTTAAATGAGACAAACATAGATCTATG-CAAA
130 TCCACCG-TTTTCCTTAGAATAAAAGTTTATACCTTAAATGAGACAAACATGGATCTACGAAAAA
1302764 ATCCTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTGGGATGCACAATATTG
194 AT-CTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTGGGATGCACAATATTG
*
1302829 ACGCATTGGTTATGCAAGAAAAGCTTTTCTTGCCATGATTTTCCTTATATTTTAAGTTCG
258 ACGCATTGGTTATGCAAGAAAAGCTTTTCTTGCCATGATTTTCCTTATATTTTGAGTTCG
** * * * *
1302889 TATGTTAAATGAAACAAATTTGGATTCTTATAAAAATCTTCGTACTTTTTATGATTAGGCAACCA
1 TATGTTAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTTCATGATTAGGCAACCA
*
1302954 AAACACATTCTCCTTTTTGGGATACATGATATTAATGCTTTGATTTCATAAGAAAAG-TTTTTTC
66 AAACACATTCTCCTTTTT-GGATACACGATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTTC
* * ** * * *
1303018 TCTACCGTTTTCCTTTGAATAAAAGATTT-TAGTTTAATTAAGACAAATATGGATCTACGAAAAA
130 TCCACCGTTTTCCTTAGAATAAAAG-TTTATACCTTAAATGAGACAAACATGGATCTACGAAAAA
* * * * * **
1303082 ATCTCCATTTTTTCAATGACTGGGCACCACAAACGCGTTATCTACATTGGGATGCACCCTATTGA
194 ATCTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTGGGATGCACAATATTGA
* * * * * * *
1303147 CGCATTAGTTATGCAAAAAAAGTTTTTCTTCCCACGATTATCTTTATATTTTGAGTTCG
259 CGCATTGGTTATGCAAGAAAAGCTTTTCTTGCCATGATTTTCCTTATATTTTGAGTTCG
* * *
1303206 TATGTTAAATGAAA-AAACATGGATTCTTATAACAATCTTCATTCTTTCCATGATTAGGCTACCA
1 TATGTTAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTTCATGATTAGGCAACCA
* ** *
1303270 AAACACGTTCAACTTATTTGGATACACGATATTAATGCTTTAATTTCATAAGAAAAG-TTTTTTC
66 AAACACATTCTCCTT-TTTGGATACACGATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTTC
*** * * **
1303334 TCCAATTTTTTCCTTAGAATAAAAGTTTATACCTTGAATGAGACAAACATGGATCTATGCTAAAA
130 TCCACCGTTTTCCTTAGAATAAAAGTTTATACCTTAAATGAGACAAACATGGATCTACGAAAAAA
* ** **
1303399 CCTCCATTCTTTCAATGATTGGGTGCCATAAACGTGTTATCTTCATTGGGATGCACAATATTGAC
195 TCTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTGGGATGCACAATATTGAC
* * * *
1303464 ACATTGGTTTTGCAATAAAAGCTTTTCTTGCCATGATTTTCCTTATAATTTGAGTTCG
260 GCATTGGTTATGCAAGAAAAGCTTTTCTTGCCATGATTTTCCTTATATTTTGAGTTCG
* * * *
1303522 TATGTTAAATGAAACAAACATTGATTCTTATAATAATCATCATTCCTTCCATGATTAGGCAACCA
1 TATGTTAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTTCATGATTAGGCAACCA
** * *
1303587 AAATGCGTTCTCCTTAATTGGATACACGATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTTC
66 AAACACATTCTCCTT-TTTGGATACACGATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTTC
* ** * * * *
1303652 TCTATTGTTTTCCTTAGAATTAAAGTTTATATCTTGAATGAGACAAACATGGATTTACGAAAAAA
130 TCCACCGTTTTCCTTAGAATAAAAGTTTATACCTTAAATGAGACAAACATGGATCTACGAAAAAA
* * * * *
1303717 TCTCCATTCTTTCAGTGATTGAGCACCATAAACATGTTATCTTCATTGGGATACACAAAATTGAC
195 TCTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTGGGATGCACAATATTGAC
* * *
1303782 GCATTGGCTT-TGCAAGAAAAAG-TTTTCTTGCCATGTTTTTCCTTATATATCGAGTTCG
260 GCATTGG-TTATGCAAG-AAAAGCTTTTCTTGCCATGATTTTCCTTATATTTTGAGTTCG
* *
1303840 TATGCTAAATGAAACAAACATGGATTCTTATAAAAATCTTCATTCTTTTCATGATTAGGCAACCA
1 TATGTTAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTTCATGATTAGGCAACCA
* * *
1303905 AAACATATTGTCCTTTTTGGTATACACGATATTAATGCTTTGATTTCATAA-AATGAGTTTTTTT
66 AAACACATTCTCCTTTTTGG-ATACACGATATTAATGCTTTGATTTCATAAGAA-AAG-TTTTTT
* * * * ** ** * * *
1303969 TCTCCGCTGTTTTTCTTAAAAGCAAAGTTTATACCTTAAATGAGACAAATGTGGATCTAGGCAAT
128 TCTCCACCGTTTTCCTTAGAATAAAAGTTTATACCTTAAATGAGACAAACATGGATCTACGAAAA
* * * * * *
1304034 AATATCCATTTTTTTAATGATTGGGC-CTCGTAAACACATTATTTTCATTGGGATGCACAATATT
193 AATCTCCATTCTTTCAATGATTGGGCAC-CATAAACACGTTATCTTCATTGGGATGCACAATATT
* *
1304098 GACGCATTGGTTATGCAAGAAAAGCTTTTCTTGCCATGATTTTTCATATATTTTGAGTTCG
257 GACGCATTGGTTATGCAAGAAAAGCTTTTCTTGCCATGATTTTCCTTATATTTTGAGTTCG
* * * **
1304159 TATGTTAAATGAAACAAACATGTACTCTTATAATAATCTTGC-TTTTTTTCATGATT-GGCCGTC
1 TATGTTAAATGAAACAAACATGGATTCTTATAATAATCTT-CATTCTTTTCATGATTAGG-CAAC
* *
1304222 AAAAACACATTCTCCTTTTTGAGATACACGATATTAATGCATTGATTTCATAAGAAAAGTTTTTT
64 CAAAACACATTCTCCTTTTTG-GATACACGATATTAATGCTTTGATTTCATAAGAAAAGTTTTTT
* * * * * * * *
1304287 TCTCTACCGTTTTCCTTAGAATCAAAGTTTATACCCTAAATAAGAGAAACTTGGATTTACGCAAA
128 TCTCCACCGTTTTCCTTAGAATAAAAGTTTATACCTTAAATGAGACAAACATGGATCTACGAAAA
* * * * *
1304352 AATTTCCATTCTTTCAATGATTGGGCACCATAAACACATTATC-TCTTTGAGATGCACAATAATG
193 AATCTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTGGGATGCACAATATTG
* * * *
1304416 TCGCATTGGTTATGCAAGAAAAGCTTTTCTTGCCACGATTTT-TTATATATTTTGAGTTTG
258 ACGCATTGGTTATGCAAGAAAAGCTTTTCTTGCCATGATTTTCCT-TATATTTTGAGTTCG
* * * * * * *
1304476 TTTGTTAAATGATATAAAGATGAATTCTTATAATAATCTTCATTCTTTTCTTGATTAGGCAGCCA
1 TATGTTAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTTCATGATTAGGCAACCA
* * ** *
1304541 AAACACATTCTCCTTTTTGGGATACACAATATTAATGCTTTAATTTTGTAAG-AAATTTTTTTTC
66 AAACACATTCTCCTTTTT-GGATACACGATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTTC
* * * * *
1304605 TCCACCATTTTTCTTAGAAT-AAAGTTTATACCTTAAATGAGACAAACGTGGATCTATGCAAAAA
130 TCCACCGTTTTCCTTAGAATAAAAGTTTATACCTTAAATGAGACAAACATGGATCTACGAAAAAA
* * * *
1304669 CCTTCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTAGGATGCACAATATTGAT
195 TCTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTGGGATGCACAATATTGAC
** * *
1304734 GCATTAATTATGCAATAAAAGCTTTTCTTGCCATGATTTTCCTTATAATTTGAGTTCG
260 GCATTGGTTATGCAAGAAAAGCTTTTCTTGCCATGATTTTCCTTATATTTTGAGTTCG
* * *
1304792 TATGTTAAATGAAACAAACATGGATTTTTATAATAATCATCATTCTTTCCATGATTAGGCAACCA
1 TATGTTAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTTCATGATTAGGCAACCA
** * * *
1304857 AAATGCATTCTCCTTGTTTGGATGCACGATATTAATGCTTTGTTTTCATATGAAAAGTTTTTTTC
66 AAACACATTCTCCTT-TTTGGATACACGATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTTC
* * * * * * * *
1304922 TCAATCATTTTCCTCATAATAAAAGTTTATACTTTAAATGAGACAAACTTGGATTTACGAAAAAA
130 TCCACCGTTTTCCTTAGAATAAAAGTTTATACCTTAAATGAGACAAACATGGATCTACGAAAAAA
* * * ** *
1304987 TCTCCATTCTTTTAATGATTGGGCGCCATAAACACGTTATCTTCGTTCAGATGCACAATATTGAT
195 TCTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTGGGATGCACAATATTGAC
* * * *
1305052 GCGTTGGTTATGCAAGAAAAGCTTTTCTTGCCATGGTTTTTCTTATATTTTGAGTTCA
260 GCATTGGTTATGCAAGAAAAGCTTTTCTTGCCATGATTTTCCTTATATTTTGAGTTCG
1305110 TATGTT
1 TATGTT
1305116 GTCGCGATGT
Statistics
Matches: 2979, Mismatches: 455, Indels: 107
0.84 0.13 0.03
Matches are distributed among these distances:
309 49 0.02
310 52 0.02
311 164 0.06
312 1 0.00
315 139 0.05
316 845 0.28
317 614 0.21
318 847 0.28
319 264 0.09
320 4 0.00
ACGTcount: A:0.32, C:0.17, G:0.14, T:0.38
Consensus pattern (317 bp):
TATGTTAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTTCATGATTAGGCAACCA
AAACACATTCTCCTTTTTGGATACACGATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTTCT
CCACCGTTTTCCTTAGAATAAAAGTTTATACCTTAAATGAGACAAACATGGATCTACGAAAAAAT
CTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTGGGATGCACAATATTGACG
CATTGGTTATGCAAGAAAAGCTTTTCTTGCCATGATTTTCCTTATATTTTGAGTTCG
Found at i:1302906 original size:159 final size:156
Alignment explanation
Indices: 1301309--1305115 Score: 1427
Period size: 159 Copynumber: 24.1 Consensus size: 156
1301299 TTGGTGTCTA
* * * * * *
1301309 CATATGTTAAAAGAAACAAACATGGATTCTTATAAAAATATTCATTCTTTCCATGATTAGGCAAC
1 CATATGTTAAATGAAACAAACATGGA-TC-TATGAAAATCTCCATTCTTTCAATGATTGGGC-AC
* * * * * *
1301374 CA-AAACACA-T-TCTCCATTTTGGGATAAACGATATTAATGCTTTGATTT-CATAAGAAAAG-T
63 CATAAACACATTATCTTCA--TTGGGATACACAATATTGATGCATTGGTTTGC--AAGAAAAGCT
* * ** ** *
1301434 TTTTTTCTCCACCATTTTCCTTGGAATCAAAGTT
124 TTTCTT-GCCATGATTTTCCTTATAATTAAAGTT
* * ** * * * * * *
1301468 TAAACCTTAAATGAGATAAAAAAGGATCTATGCAAAATCTCCATTCTTTCAATGAATGGGAACCA
1 CATATGTTAAATGAAACAAACATGGATCTATG-AAAATCTCCATTCTTTCAATGATTGGGCACCA
* * * * * * * *
1301533 TAAACA-AGTTATCTTCTTTGGGATGCACAGTATTGACGTATAGGCTATGCAAGAAAGGCTTTTC
65 TAAACACA-TTATCTTCATTGGGATACACAATATTGATGCATTGG-TTTGCAAGAAAAGCTTTTC
* * *
1301597 TTCCCATGATTTTCCTTATATTTAGAGTT
128 TTGCCATGATTTTCCTTATAATTAAAGTT
* * * * *
1301626 CGTATGTTAAATGAAACAAACAGGGATTCTTAT-AATAATCTTCATTCTTTCCATGATTAGGCAC
1 CATATGTTAAATGAAACAAACATGGA-TC-TATGAA-AATCTCCATTCTTTCAATGATTGGGCAC
* * * * * * *
1301690 CA-AAACACGTTCTCCTT-ATTTGGATACACGATATTAATGCTTTGATTT-CATAAGAAAAG-TT
63 CATAAACACATTAT-CTTCATTGGGATACACAATATTGATGCATTGGTTTGC--AAGAAAAGCTT
* ** * *
1301751 TT-TTCTCCACCATTTTCCTTAGAATAAAAGTT
125 TTCTT-GCCATGATTTTCCTTATAATTAAAGTT
* ** * * * * **
1301783 TATACCTTGAATGAGACAAACCTGGATCTACGAAAAAATCTCCATTCTTTCAATGATTAAGCACC
1 CATATGTTAAATGAAACAAACATGGATCTATG--AAAATCTCCATTCTTTCAATGATTGGGCACC
** * * **
1301848 ATAAACATGTTATCTTCATTGGGATACACAAAATGGACACATTGGTTTTGCAAGAAAAGCTTTTC
64 ATAAACACATTATCTTCATTGGGATACACAATATTGATGCATTGG-TTTGCAAGAAAAGCTTTTC
* * **
1301913 TTGCCAAGATTTTCCTTATATTTTGAGTT
128 TTGCCATGATTTTCCTTATAATTAAAGTT
* * * *
1301942 C----G-T--ATGAAACAAACATGAATTCTTAT-AGAAATCTTCATTCTTT-ACATTATTAGGCA
1 CATATGTTAAATGAAACAAACATGGA-TC-TATGA-AAATCTCCATTCTTTCA-ATGATTGGGC-
* * * * * * * * * ** *
1301998 ACCA-ACACACATTCTCCTT-TTTAGTATACGCAATATTAATGCTTTGATTTTATAAGAAATG-T
61 ACCATAAACACATTAT-CTTCATTGGGATACACAATATTGATGCATTG-GTTTGCAAGAAAAGCT
* * * * **
1302060 TTTTTTCTCCATTG-TTTTTCTTAGAAGCAAAGTT
124 TTTCTT-GCCA-TGATTTTCCTTATAATTAAAGTT
* * * ** ** * * * *
1302094 TATACCG-TAAATGAGACAAATGTGGATCTACACAATAATCTCCATTCTTTTAACGATTGAGCAT
1 CATA-TGTTAAATGAAACAAACATGGATCTA-TGAA-AATCTCCATTCTTTCAATGATTGGGCAC
* * * *
1302158 CGTAAACACATTATTTTCATTAGGATGCACAATATTGATGCATTGGTTATGCAAGAAAAGCTTTT
63 CATAAACACATTATCTTCATTGGGATACACAATATTGATGCATTGGTT-TGCAAGAAAAGCTTTT
* * * **
1302223 CTTGCCATGATATTCCATATATTTTGAGTT
127 CTTGCCATGATTTTCCTTATAATTAAAGTT
* * * * * *
1302253 CGTAGGTTAAATGAAATAAACATGTATTCTTAT-AATAATCTTCC-TTCTTTTC-ATAATTGGCC
1 CATATGTTAAATGAAACAAACATGGA-TC-TATGAA-AATC-TCCATTC-TTTCAATGATTGGGC
* * * * * * **
1302315 ATCCA-AAACACATTCTCCTT-TTTGGGGTACACGATATTCATTCATTAATTT-CATAAGAAAAG
61 A-CCATAAACACATTAT-CTTCATTGGGATACACAATATTGATGCATTGGTTTGC--AAGAAAAG
* * * **
1302377 -TTTTTTTCTCCACCG-TTTTCCTTGGAATTAAAGTT
122 CTTTTCTT-GCCA-TGATTTTCCTTATAATTAAAGTT
**** * * * *
1302412 CATCCCCTAAAT-AAGAGAAACAAGGATTTACGCAAAATCTCCATTCTTTCAATGATTGGGCACC
1 CATATGTTAAATGAA-ACAAACATGGATCTATG-AAAATCTCCATTCTTTCAATGATTGGGCACC
* * **
1302476 ATAAACACATTATC-TCATTGGGATGCACAATATTG-TCGCATTGGTTATGCAAGAAATGCACTT
64 ATAAACACATTATCTTCATTGGGATACACAATATTGAT-GCATTGGTT-TGCAAGAAAAGCTTTT
* * **
1302539 CTTGCCAAGATTTT-CTATATATTTTGAGTT
127 CTTGCCATGATTTTCCT-TATAATTAAAGTT
** * * * * * * *
1302569 TGTATGTTAAATGATATAAACATGAATTCTTAT-AATAATCTTCATTATTTTC-TTGATTAGGCA
1 CATATGTTAAATGAAACAAACATGGA-TC-TATGAA-AATCTCCATT-CTTTCAATGATTGGGCA
* * * * ** *
1302632 GCCA-AAACACATTCTCCTT--TCTGGGATACACGATATTAATGCTTTAATTTTGTAAGAAAAG-
62 -CCATAAACACATTAT-CTTCAT-TGGGATACACAATATTGATGCATT-GGTTTGCAAGAAAAGC
* * * * * *
1302693 TTTTTTTCTCCACCGTTTTTCC-TAGAATAAAAGTT
123 TTTTCTT-GCCA-TGATTTTCCTTATAATTAAAGTT
* ** * *
1302728 TATACCTTAAATGAGACAAACATAGATCTATGCAAAATCCTCCATTCTTTCAATGATTGGGCACC
1 CATATGTTAAATGAAACAAACATGGATCTATG-AAAAT-CTCCATTCTTTCAATGATTGGGCACC
* * *
1302793 ATAAACACGTTATCTTCATTGGGATGCACAATATTGACGCATTGGTTATGCAAGAAAAGCTTTTC
64 ATAAACACATTATCTTCATTGGGATACACAATATTGATGCATTGGTT-TGCAAGAAAAGCTTTTC
* *
1302858 TTGCCATGATTTTCCTTATATTTTAAGTT
128 TTGCCATGATTTTCCTTATAATTAAAGTT
* ** * * * * ** *
1302887 CGTATGTTAAATGAAACAAATTTGGATTCTTATAAAAATCTTCGTACTTTTTATGATTAGGCAAC
1 CATATGTTAAATGAAACAAACATGGA-TC-TATGAAAATCTCCATTCTTTCAATGATTGGGC-AC
* * ** * * * *
1302952 CA-AAACACATTCTCCTT-TTTGGGATACATGATATTAATGCTTTGATTT-CATAAGAAAAGTTT
63 CATAAACACATTAT-CTTCATTGGGATACACAATATTGATGCATTGGTTTGC--AAGAAAAG-CT
* *
1303014 TTTCTCTACC--G-TTTTCCTT-TGAATAAAAGATT
124 TTTCT-TGCCATGATTTTCCTTAT-AATTAAAG-TT
* * * * * * *
1303046 -TTA-GTTTAATTAAGACAAATATGGATCTACGAAAAAATCTCCATTTTTTCAATGACTGGGCAC
1 CATATGTTAAATGAA-ACAAACATGGATCTATG--AAAATCTCCATTCTTTCAATGATTGGGCAC
* * * * * ** * * * *
1303109 CACAAACGCGTTATCTACATTGGGATGCACCCTATTGACGCATTAGTTATGCAAAAAAAGTTTTT
63 CATAAACACATTATCTTCATTGGGATACACAATATTGATGCATTGGTT-TGCAAGAAAAGCTTTT
* * * * * **
1303174 CTTCCCACGATTATCTTTATATTTTGAGTT
127 CTTGCCATGATTTTCCTTATAATTAAAGTT
* * * *
1303204 CGTATGTTAAATGAAA-AAACATGGATTCTTAT-AACAATCTTCATTCTTTCCATGATTAGGCTA
1 CATATGTTAAATGAAACAAACATGGA-TC-TATGAA-AATCTCCATTCTTTCAATGATTGGGC-A
* * * * * * **
1303267 CCA-AAACACGTTCAACTT-ATTTGGATACACGATATTAATGCTTTAATTT-CATAAGAAAAG-T
62 CCATAAACACATT-ATCTTCATTGGGATACACAATATTGATGCATTGGTTTGC--AAGAAAAGCT
* * * *
1303328 TTT-TTCTCCAAT-TTTTTCCTTAGAATAAAAGTT
124 TTTCTT-GCC-ATGATTTTCCTTATAATTAAAGTT
* ** * * * **
1303361 TATACCTTGAATGAGACAAACATGGATCTATGCTAAAACCTCCATTCTTTCAATGATTGGGTGCC
1 CATATGTTAAATGAAACAAACATGGATCTATG--AAAATCTCCATTCTTTCAATGATTGGGCACC
*** * ** *
1303426 ATAAACGTGTTATCTTCATTGGGATGCACAATATTGACACATTGGTTTTGCAATAAAAGCTTTTC
64 ATAAACACATTATCTTCATTGGGATACACAATATTGATGCATTGG-TTTGCAAGAAAAGCTTTTC
**
1303491 TTGCCATGATTTTCCTTATAATTTGAGTT
128 TTGCCATGATTTTCCTTATAATTAAAGTT
* * * * *
1303520 CGTATGTTAAATGAAACAAACATTGATTCTTAT-AATAATCAT-CATTCCTTCCATGATTAGGCA
1 CATATGTTAAATGAAACAAACATGGA-TC-TATGAA-AATC-TCCATTCTTTCAATGATTGGGC-
** * * * * * * *
1303583 ACCA-AAATGCGTTCTCCTTAATT-GGATACACGATATTAATGCTTTGATTT-CATAAGAAAAG-
61 ACCATAAACACATTAT-CTTCATTGGGATACACAATATTGATGCATTGGTTTGC--AAGAAAAGC
* *
1303644 TTTT-TTTCTCTATTG-TTTTCCTTAGAATTAAAGTT
123 TTTTCTTGC-C-A-TGATTTTCCTTATAATTAAAGTT
* * * * * * * *
1303679 TATATCTTGAATGAGACAAACATGGATTTACGAAAAAATCTCCATTCTTTCAGTGATTGAGCACC
1 CATATGTTAAATGAAACAAACATGGATCTATG--AAAATCTCCATTCTTTCAATGATTGGGCACC
** * *
1303744 ATAAACATGTTATCTTCATTGGGATACACAAAATTGACGCATTGGCTTTGCAAGAAAAAG-TTTT
64 ATAAACACATTATCTTCATTGGGATACACAATATTGATGCATTGG-TTTGCAAG-AAAAGCTTTT
* **
1303808 CTTGCCATGTTTTTCCTTAT-ATATCGAGTT
127 CTTGCCATGATTTTCCTTATAAT-TAAAGTT
* * * * *
1303838 CGTATGCTAAATGAAACAAACATGGATTCTTATAAAAATCTTCATTCTTTTC-ATGATTAGGCAA
1 CATATGTTAAATGAAACAAACATGGA-TC-TATGAAAATCTCCATTC-TTTCAATGATTGGGC-A
* * * * * * * * *
1303902 CCA-AAACATATTGTCCTT-TTTGGTATACACGATATTAATGCTTTGATTT-CATA-AAATGAGT
62 CCATAAACACATTAT-CTTCATTGGGATACACAATATTGATGCATTGGTTTGCA-AGAAA--AGC
* * * * * **
1303963 TTTTTTTCTCCGCTG-TTTTTCTTAAAAGCAAAGTT
123 TTTTCTT-GCC-ATGATTTTCCTTATAATTAAAGTT
* ** * ** * * * *
1303998 TATACCTTAAATGAGACAAATGTGGATCTAGGCAATAATATCCATTTTTTTAATGATTGGGC-CT
1 CATATGTTAAATGAAACAAACATGGATCTATG-AA-AATCTCCATTCTTTCAATGATTGGGCAC-
* * * *
1304062 CGTAAACACATTATTTTCATTGGGATGCACAATATTGACGCATTGGTTATGCAAGAAAAGCTTTT
63 CATAAACACATTATCTTCATTGGGATACACAATATTGATGCATTGGTT-TGCAAGAAAAGCTTTT
* * * **
1304127 CTTGCCATGATTTTTCATATATTTTGAGTT
127 CTTGCCATGATTTTCCTTATAATTAAAGTT
* * * * * * *
1304157 CGTATGTTAAATGAAACAAACATGTACTCTTAT-AATAATCTTGCTTTTTTTC-ATGATTGGCCG
1 CATATGTTAAATGAAACAAACATGGA-TC-TATGAA-AATC-TCCATTCTTTCAATGATTGGGCA
* * * * * * * *
1304220 TCAAAAACACATTCTCCTT-TTTGAGATACACGATATTAATGCATTGATTT-CATAAGAAAAG-T
62 CCATAAACACATTAT-CTTCATTGGGATACACAATATTGATGCATTGGTTTGC--AAGAAAAGCT
* * * *
1304282 TTT-TTTCTCTACCG-TTTTCCTTAGAATCAAAGTT
124 TTTCTTGC-C-A-TGATTTTCCTTATAATTAAAGTT
* *** * * * * *
1304316 TATACCCTAAAT-AAGAGAAACTTGGATTTACGCAAAAATTTCCATTCTTTCAATGATTGGGCAC
1 CATATGTTAAATGAA-ACAAACATGGATCTATG--AAAATCTCCATTCTTTCAATGATTGGGCAC
* * * *
1304380 CATAAACACATTATC-TCTTTGAGATGCACAATAATG-TCGCATTGGTTATGCAAGAAAAGCTTT
63 CATAAACACATTATCTTCATTGGGATACACAATATTGAT-GCATTGGTT-TGCAAGAAAAGCTTT
* **
1304443 TCTTGCCACGATTTT--TTATATATTTTGAGTT
126 TCTTGCCATGATTTTCCTTATA-A-TTAAAGTT
** * * * * * * * *
1304474 TGTTTGTTAAATGATATAAAGATGAATTCTTAT-AATAATCTTCATTCTTTTC-TTGATTAGGCA
1 CATATGTTAAATGAAACAAACATGGA-TC-TATGAA-AATCTCCATTC-TTTCAATGATTGGGCA
* * * * ** * *
1304537 GCCA-AAACACATTCTCCTT-TTTGGGATACACAATATTAATGCTTTAATTTTGTAAG-AAA-TT
62 -CCATAAACACATTAT-CTTCATTGGGATACACAATATTGATGCATT-GGTTTGCAAGAAAAGCT
* * ** * *
1304598 TTTTTTCTCCACCATTTTTCTTAGAA-TAAAGTT
124 TTTCTT-GCCATGATTTTCCTTATAATTAAAGTT
* ** * * * *
1304631 TATACCTTAAATGAGACAAACGTGGATCTATGCAAAAACCTTCATTCTTTCAATGATTGGGCACC
1 CATATGTTAAATGAAACAAACATGGATCTATG--AAAATCTCCATTCTTTCAATGATTGGGCACC
* * * ** *
1304696 ATAAACACGTTATCTTCATTAGGATGCACAATATTGATGCATTAATTATGCAATAAAAGCTTTTC
64 ATAAACACATTATCTTCATTGGGATACACAATATTGATGCATTGGTT-TGCAAGAAAAGCTTTTC
**
1304761 TTGCCATGATTTTCCTTATAATTTGAGTT
128 TTGCCATGATTTTCCTTATAATTAAAGTT
* * * *
1304790 CGTATGTTAAATGAAACAAACATGGATTTTTAT-AATAATCAT-CATTCTTTCCATGATTAGGCA
1 CATATGTTAAATGAAACAAACATGGA--TCTATGAA-AATC-TCCATTCTTTCAATGATTGGGC-
** * * * * * * * *
1304853 ACCA-AAATGCATTCTCCTT-GTTTGGATGCACGATATTAATGC-TTTGTTTTCATATGAAAAG-
61 ACCATAAACACATTAT-CTTCATTGGGATACACAATATTGATGCATTGGTTTGCA-A-GAAAAGC
* * * *
1304914 TTTT-TTTCTCAATCATTTTCCTCATAATAAAAGTT
123 TTTTCTTGC-C-ATGATTTTCCTTATAATTAAAGTT
* * * * * * *
1304949 TATACT-TTAAATGAGACAAACTTGGATTTACGAAAAAATCTCCATTCTTTTAATGATTGGGCGC
1 CATA-TGTTAAATGAAACAAACATGGATCTATG--AAAATCTCCATTCTTTCAATGATTGGGCAC
* * ** * *
1305013 CATAAACACGTTATCTTCGTTCAGATGCACAATATTGATGCGTTGGTTATGCAAGAAAAGCTTTT
63 CATAAACACATTATCTTCATTGGGATACACAATATTGATGCATTGGTT-TGCAAGAAAAGCTTTT
* * * **
1305078 CTTGCCATGGTTTTTCTTATATTTTGAGTT
127 CTTGCCATGATTTTCCTTATAATTAAAGTT
1305108 CATATGTT
1 CATATGTT
1305116 GTCGCGATGT
Statistics
Matches: 2639, Mismatches: 754, Indels: 510
0.68 0.19 0.13
Matches are distributed among these distances:
151 8 0.00
152 85 0.03
153 10 0.00
154 3 0.00
155 5 0.00
156 43 0.02
157 339 0.13
158 678 0.26
159 1167 0.44
160 261 0.10
161 35 0.01
162 5 0.00
ACGTcount: A:0.32, C:0.17, G:0.14, T:0.38
Consensus pattern (156 bp):
CATATGTTAAATGAAACAAACATGGATCTATGAAAATCTCCATTCTTTCAATGATTGGGCACCAT
AAACACATTATCTTCATTGGGATACACAATATTGATGCATTGGTTTGCAAGAAAAGCTTTTCTTG
CCATGATTTTCCTTATAATTAAAGTT
Found at i:1302968 original size:318 final size:318
Alignment explanation
Indices: 1301311--1305115 Score: 4564
Period size: 316 Copynumber: 12.0 Consensus size: 318
1301301 GGTGTCTACA
* * * *
1301311 TATGTTAAAAGAAACAAACATGGATTCTTATAAAAATATTCATTCTTTCCATGATTAGGCAACCA
1 TATGTTAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTTCATGATTAGGCAACCA
* *
1301376 AAACACATTCTCCATTTTGGGATAAACGATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTTC
66 AAACACATTCTCCTTTTTGGGATACACGATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTTC
* * * * * * * *
1301441 TCCACC-ATTTTCCTTGGAATCAAAGTTTAAACCTTAAATGAGATAAAAAAGGATCTATGCAAAA
131 TCCACCGTTTTTCCTTAGAATAAAAGTTTATACCTTAAATGAGACAAACATGGATCTACGCAAAA
* * * * *
1301505 TCTCCATTCTTTCAATGAATGGGAACCATAAACAAGTTATCTTCTTTGGGATGCACAGTATTGAC
196 TCTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTGGGATGCACAATATTGAC
* * * * * *
1301570 GTATAGGCTATGCAAGAAAGGCTTTTCTTCCCATGATTTTCCTTATATTTAGAGTTCG
261 GCATTGGTTATGCAAGAAAAGCTTTTCTTGCCATGATTTTCCTTATATTTTGAGTTCG
* *
1301628 TATGTTAAATGAAACAAACAGGGATTCTTATAATAATCTTCATTCTTTCCATGATTAGGC-ACCA
1 TATGTTAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTTCATGATTAGGCAACCA
*
1301692 AAACACGTTCTCCTTATTT-GGATACACGATATTAATGCTTTGATTTCATAAGAAAAG-TTTTTT
66 AAACACATTCTCCTT-TTTGGGATACACGATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTT
* * * *
1301755 CTCCACC-ATTTTCCTTAGAATAAAAGTTTATACCTTGAATGAGACAAACCTGGATCTACGAAAA
130 CTCCACCGTTTTTCCTTAGAATAAAAGTTTATACCTTAAATGAGACAAACATGGATCTACG-CAA
** * * * *
1301819 AATCTCCATTCTTTCAATGATTAAGCACCATAAACATGTTATCTTCATTGGGATACACAAAATGG
194 AATCTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTGGGATGCACAATATTG
* * *
1301884 ACACATTGGTTTTGCAAGAAAAGCTTTTCTTGCCAAGATTTTCCTTATATTTTGAGTTC-
259 ACGCATTGGTTATGCAAGAAAAGCTTTTCTTGCCATGATTTTCCTTATATTTTGAGTTCG
* * *
1301943 ---G-T--ATGAAACAAACATGAATTCTTATAGA-AATCTTCATTCTTTACATTATTAGGCAACC
1 TATGTTAAATGAAACAAACATGGATTCTTATA-ATAATCTTCATTCTTTTCATGATTAGGCAACC
* * * * * * *
1302001 AACACACATTCTCCTTTTTAGTATACGCAATATTAATGCTTTGATTTTATAAGAAATGTTTTTTT
65 AAAACACATTCTCCTTTTTGGGATACACGATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTT
** ** * ** *
1302066 CTCCATTGTTTTT-CTTAGAAGCAAAGTTTATACCGTAAATGAGACAAATGTGGATCTACACAAT
130 CTCCACCGTTTTTCCTTAGAATAAAAGTTTATACCTTAAATGAGACAAACATGGATCTACGCAA-
* * * * * * * *
1302130 AATCTCCATTCTTTTAACGATTGAGCATCGTAAACACATTATTTTCATTAGGATGCACAATATTG
194 AATCTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTGGGATGCACAATATTG
* * *
1302195 ATGCATTGGTTATGCAAGAAAAGCTTTTCTTGCCATGATATTCCATATATTTTGAGTTCG
259 ACGCATTGGTTATGCAAGAAAAGCTTTTCTTGCCATGATTTTCCTTATATTTTGAGTTCG
* * * * * *
1302255 TAGGTTAAATGAAATAAACATGTATTCTTATAATAATCTTCCTTCTTTTCATAATT-GGCCATCC
1 TATGTTAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTTCATGATTAGG-CAACC
* * * * *
1302319 AAAACACATTCTCCTTTTTGGGGTACACGATATTCATTCATTAATTTCATAAGAAAAGTTTTTTT
65 AAAACACATTCTCCTTTTTGGGATACACGATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTT
* * * * * * * * *
1302384 CTCCACCG-TTTTCCTTGGAATTAAAGTTCATCCCCTAAATAAGAGAAACAAGGATTTACGCAAA
130 CTCCACCGTTTTTCCTTAGAATAAAAGTTTATACCTTAAATGAGACAAACATGGATCTACGCAAA
* *
1302448 ATCTCCATTCTTTCAATGATTGGGCACCATAAACACATTATC-TCATTGGGATGCACAATATTGT
195 ATCTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTGGGATGCACAATATTGA
* ** * *
1302512 CGCATTGGTTATGCAAGAAATGCACTTCTTGCCAAGATTTT-CTATATATTTTGAGTTTG
260 CGCATTGGTTATGCAAGAAAAGCTTTTCTTGCCATGATTTTCCT-TATATTTTGAGTTCG
* * * * * *
1302571 TATGTTAAATGATATAAACATGAATTCTTATAATAATCTTCATTATTTTCTTGATTAGGCAGCCA
1 TATGTTAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTTCATGATTAGGCAACCA
* * **
1302636 AAACACATTCTCCTTTCTGGGATACACGATATTAATGCTTTAATTTTGTAAGAAAAGTTTTTTTC
66 AAACACATTCTCCTTTTTGGGATACACGATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTTC
* *
1302701 TCCACCGTTTTTCC-TAGAATAAAAGTTTATACCTTAAATGAGACAAACATAGATCTATGCAAAA
131 TCCACCGTTTTTCCTTAGAATAAAAGTTTATACCTTAAATGAGACAAACATGGATCTACGCAAAA
1302765 TCCTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTGGGATGCACAATATTGA
196 T-CTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTGGGATGCACAATATTGA
*
1302830 CGCATTGGTTATGCAAGAAAAGCTTTTCTTGCCATGATTTTCCTTATATTTTAAGTTCG
260 CGCATTGGTTATGCAAGAAAAGCTTTTCTTGCCATGATTTTCCTTATATTTTGAGTTCG
** * * * *
1302889 TATGTTAAATGAAACAAATTTGGATTCTTATAAAAATCTTCGTACTTTTTATGATTAGGCAACCA
1 TATGTTAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTTCATGATTAGGCAACCA
*
1302954 AAACACATTCTCCTTTTTGGGATACATGATATTAATGCTTTGATTTCATAAGAAAAG-TTTTTTC
66 AAACACATTCTCCTTTTTGGGATACACGATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTTC
* * ** * * * *
1303018 TCTACCG-TTTTCCTTTGAATAAAAGATTT-TAGTTTAATTAAGACAAATATGGATCTACGAAAA
131 TCCACCGTTTTTCCTTAGAATAAAAG-TTTATACCTTAAATGAGACAAACATGGATCTACG-CAA
* * * * * **
1303081 AATCTCCATTTTTTCAATGACTGGGCACCACAAACGCGTTATCTACATTGGGATGCACCCTATTG
194 AATCTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTGGGATGCACAATATTG
* * * * * * *
1303146 ACGCATTAGTTATGCAAAAAAAGTTTTTCTTCCCACGATTATCTTTATATTTTGAGTTCG
259 ACGCATTGGTTATGCAAGAAAAGCTTTTCTTGCCATGATTTTCCTTATATTTTGAGTTCG
* * *
1303206 TATGTTAAATGAAA-AAACATGGATTCTTATAACAATCTTCATTCTTTCCATGATTAGGCTACCA
1 TATGTTAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTTCATGATTAGGCAACCA
* ** *
1303270 AAACACGTTCAACTTATTT-GGATACACGATATTAATGCTTTAATTTCATAAGAAAAG-TTTTTT
66 AAACACATTCTCCTT-TTTGGGATACACGATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTT
** * *
1303333 CTCCA-ATTTTTTCCTTAGAATAAAAGTTTATACCTTGAATGAGACAAACATGGATCTATGCTAA
130 CTCCACCGTTTTTCCTTAGAATAAAAGTTTATACCTTAAATGAGACAAACATGGATCTACGC-AA
* ** **
1303397 AACCTCCATTCTTTCAATGATTGGGTGCCATAAACGTGTTATCTTCATTGGGATGCACAATATTG
194 AATCTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTGGGATGCACAATATTG
* * * *
1303462 ACACATTGGTTTTGCAATAAAAGCTTTTCTTGCCATGATTTTCCTTATAATTTGAGTTCG
259 ACGCATTGGTTATGCAAGAAAAGCTTTTCTTGCCATGATTTTCCTTATATTTTGAGTTCG
* * * *
1303522 TATGTTAAATGAAACAAACATTGATTCTTATAATAATCATCATTCCTTCCATGATTAGGCAACCA
1 TATGTTAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTTCATGATTAGGCAACCA
** * *
1303587 AAATGCGTTCTCCTTAATT-GGATACACGATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTT
66 AAACACATTCTCCTT-TTTGGGATACACGATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTT
* ** * * * * *
1303651 CTCTATTG-TTTTCCTTAGAATTAAAGTTTATATCTTGAATGAGACAAACATGGATTTACGAAAA
130 CTCCACCGTTTTTCCTTAGAATAAAAGTTTATACCTTAAATGAGACAAACATGGATCTACG-CAA
* * * * *
1303715 AATCTCCATTCTTTCAGTGATTGAGCACCATAAACATGTTATCTTCATTGGGATACACAAAATTG
194 AATCTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTGGGATGCACAATATTG
* * *
1303780 ACGCATTGGCTT-TGCAAGAAAAAG-TTTTCTTGCCATGTTTTTCCTTATATATCGAGTTCG
259 ACGCATTGG-TTATGCAAG-AAAAGCTTTTCTTGCCATGATTTTCCTTATATTTTGAGTTCG
* *
1303840 TATGCTAAATGAAACAAACATGGATTCTTATAAAAATCTTCATTCTTTTCATGATTAGGCAACCA
1 TATGTTAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTTCATGATTAGGCAACCA
* * * *
1303905 AAACATATTGTCCTTTTTGGTATACACGATATTAATGCTTTGATTTCATAA-AATGAGTTTTTTT
66 AAACACATTCTCCTTTTTGGGATACACGATATTAATGCTTTGATTTCATAAGAA-AAG-TTTTTT
* * * ** ** *
1303969 TCTCCGCTGTTTTT-CTTAAAAGCAAAGTTTATACCTTAAATGAGACAAATGTGGATCTAGGCAA
129 TCTCCACCGTTTTTCCTTAGAATAAAAGTTTATACCTTAAATGAGACAAACATGGATCTACGCAA
* * * * * *
1304033 TAATATCCATTTTTTTAATGATTGGGC-CTCGTAAACACATTATTTTCATTGGGATGCACAATAT
194 -AATCTCCATTCTTTCAATGATTGGGCAC-CATAAACACGTTATCTTCATTGGGATGCACAATAT
* *
1304097 TGACGCATTGGTTATGCAAGAAAAGCTTTTCTTGCCATGATTTTTCATATATTTTGAGTTCG
257 TGACGCATTGGTTATGCAAGAAAAGCTTTTCTTGCCATGATTTTCCTTATATTTTGAGTTCG
* * * **
1304159 TATGTTAAATGAAACAAACATGTACTCTTATAATAATCTTGC-TTTTTTTCATGATT-GGCCGTC
1 TATGTTAAATGAAACAAACATGGATTCTTATAATAATCTT-CATTCTTTTCATGATTAGG-CAAC
* * *
1304222 AAAAACACATTCTCCTTTTTGAGATACACGATATTAATGCATTGATTTCATAAGAAAAGTTTTTT
64 CAAAACACATTCTCCTTTTTGGGATACACGATATTAATGCTTTGATTTCATAAGAAAAGTTTTTT
* * * * * * *
1304287 TCTCTACCG-TTTTCCTTAGAATCAAAGTTTATACCCTAAATAAGAGAAACTTGGATTTACGCAA
129 TCTCCACCGTTTTTCCTTAGAATAAAAGTTTATACCTTAAATGAGACAAACATGGATCTACGC-A
* * * * *
1304351 AAATTTCCATTCTTTCAATGATTGGGCACCATAAACACATTATC-TCTTTGAGATGCACAATAAT
193 AAATCTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTGGGATGCACAATATT
* * * *
1304415 GTCGCATTGGTTATGCAAGAAAAGCTTTTCTTGCCACGATTTT-TTATATATTTTGAGTTTG
258 GACGCATTGGTTATGCAAGAAAAGCTTTTCTTGCCATGATTTTCCT-TATATTTTGAGTTCG
* * * * * * *
1304476 TTTGTTAAATGATATAAAGATGAATTCTTATAATAATCTTCATTCTTTTCTTGATTAGGCAGCCA
1 TATGTTAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTTCATGATTAGGCAACCA
* * ** *
1304541 AAACACATTCTCCTTTTTGGGATACACAATATTAATGCTTTAATTTTGTAAG-AAATTTTTTTTC
66 AAACACATTCTCCTTTTTGGGATACACGATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTTC
* * *
1304605 TCCACCATTTTT-CTTAGAAT-AAAGTTTATACCTTAAATGAGACAAACGTGGATCTATGCAAAA
131 TCCACCGTTTTTCCTTAGAATAAAAGTTTATACCTTAAATGAGACAAACATGGATCTACGC-AAA
* * *
1304668 ACCTTCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTAGGATGCACAATATTGA
195 ATCTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTGGGATGCACAATATTGA
* ** * *
1304733 TGCATTAATTATGCAATAAAAGCTTTTCTTGCCATGATTTTCCTTATAATTTGAGTTCG
260 CGCATTGGTTATGCAAGAAAAGCTTTTCTTGCCATGATTTTCCTTATATTTTGAGTTCG
* * *
1304792 TATGTTAAATGAAACAAACATGGATTTTTATAATAATCATCATTCTTTCCATGATTAGGCAACCA
1 TATGTTAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTTCATGATTAGGCAACCA
** * * *
1304857 AAATGCATTCTCCTTGTTT-GGATGCACGATATTAATGCTTTGTTTTCATATGAAAAGTTTTTTT
66 AAACACATTCTCCTT-TTTGGGATACACGATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTT
* * * * * * * * *
1304921 CTCAATC-ATTTTCCTCATAATAAAAGTTTATACTTTAAATGAGACAAACTTGGATTTACGAAAA
130 CTCCACCGTTTTTCCTTAGAATAAAAGTTTATACCTTAAATGAGACAAACATGGATCTACG-CAA
* * * **
1304985 AATCTCCATTCTTTTAATGATTGGGCGCCATAAACACGTTATCTTCGTTCAGATGCACAATATTG
194 AATCTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTGGGATGCACAATATTG
* * * * *
1305050 ATGCGTTGGTTATGCAAGAAAAGCTTTTCTTGCCATGGTTTTTCTTATATTTTGAGTTCA
259 ACGCATTGGTTATGCAAGAAAAGCTTTTCTTGCCATGATTTTCCTTATATTTTGAGTTCG
1305110 TATGTT
1 TATGTT
1305116 GTCGCGATGT
Statistics
Matches: 2977, Mismatches: 449, Indels: 123
0.84 0.13 0.03
Matches are distributed among these distances:
309 49 0.02
310 53 0.02
311 158 0.05
312 5 0.00
315 137 0.05
316 846 0.28
317 620 0.21
318 842 0.28
319 260 0.09
320 7 0.00
ACGTcount: A:0.32, C:0.17, G:0.14, T:0.38
Consensus pattern (318 bp):
TATGTTAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTTCATGATTAGGCAACCA
AAACACATTCTCCTTTTTGGGATACACGATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTTC
TCCACCGTTTTTCCTTAGAATAAAAGTTTATACCTTAAATGAGACAAACATGGATCTACGCAAAA
TCTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTGGGATGCACAATATTGAC
GCATTGGTTATGCAAGAAAAGCTTTTCTTGCCATGATTTTCCTTATATTTTGAGTTCG
Found at i:1308431 original size:21 final size:21
Alignment explanation
Indices: 1308405--1308444 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
1308395 TTGAAAGATT
1308405 TATCGATACAT-TGAGGTAATG
1 TATCGATACATCTG-GGTAATG
1308426 TATCGATACATCTGGGTAA
1 TATCGATACATCTGGGTAA
1308445 AAATGTGAGT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 16 0.89
22 2 0.11
ACGTcount: A:0.33, C:0.12, G:0.23, T:0.33
Consensus pattern (21 bp):
TATCGATACATCTGGGTAATG
Found at i:1309560 original size:159 final size:159
Alignment explanation
Indices: 1308970--1313375 Score: 1936
Period size: 159 Copynumber: 27.8 Consensus size: 159
1308960 TCTACATATA
* * * *
1308970 TTAAATGAAACAAACATGGGTTCT-TATAAAAATCTTCATTCTTTCCATGATTAGGCAACCA-AA
1 TTAAATGAGACAAACAT-GGATCTATATAAAAATCTCCATTCTTTCAATGATTAGGC-ACCATAA
* * * * * * * * ***
1309033 ACAC-AT-TCTCCATTTTGGGATAAACGATAATAATGCTTTGATTTCATAAGAAAAGTTTTTTTC
64 ACACGTTATCTTCA--TTGGGATACACAATATTGATGCATTGGTTTTGCAAGAAAAGTTTTTTTC
* * * *
1309096 TCCACCATTTTCCTTGGAATCAAAGTTTAAACC
127 TCCACGATTTTCCTTAGAATTAAAGTTTATACC
* * * ** *
1309129 TTAAATGAGATAAAAAAGGATCTAT-GCAAAATCTCCATTCTTTCAATGATTAGGAACCATAAAC
1 TTAAATGAGACAAACATGGATCTATATAAAAATCTCCATTCTTTCAATGATTAGGCACCATAAAC
* * * * * * * * * * *
1309193 ATGTTATCTTCTTTGGGATGCACAGTATCGATGTATAGGATATGCAAGAAAGGCTTTTCTTC-CC
66 ACGTTATCTTCATTGGGATACACAATATTGATGCATTGGTTTTGCAAGAAAAG-TTTTTTTCTCC
* * * ** * **
1309257 ATGATTTTCCTTATATTTTGAGTTCATATG
130 ACGATTTTCCTTAGAATTAAAGTTTATACC
* * * *
1309287 TTAAATGAAACAAACATGGATTCT-TATAATAATCTTCATTCTTTCCATGATTAGGCAACCA-AA
1 TTAAATGAGACAAACATGGA-TCTATATAAAAATCTCCATTCTTTCAATGATTAGGC-ACCATAA
* * * * * * *
1309350 ACGCGTTCTCCTT-ATTTGGATACACGATATTAATG-ATTTGATTT-CATAAGAAAAGTTTTTTT
64 ACACGTTAT-CTTCATTGGGATACACAATATTGATGCATTGGTTTTGC--AAGAAAAGTTTTTTT
* *
1309412 CTCCACCATTTTCCTTAGAATAAAAGTTTATACC
126 CTCCACGATTTTCCTTAGAATTAAAGTTTATACC
* *
1309446 TTGAATGAGACAAACCTGGATCTATGA-AAAAATCTCCATTCTTTCAATGATT-GAGCACCATAA
1 TTAAATGAGACAAACATGGATCTAT-ATAAAAATCTCCATTCTTTCAATGATTAG-GCACCATAA
* * * * *
1309509 ACATGTTATCTTCGTTGGGATACACAAAATTGATGCATTGGTTTTGCAAGAAAAGCTTTTCTT-G
64 ACACGTTATCTTCATTGGGATACACAATATTGATGCATTGGTTTTGCAAGAAAAG-TTTTTTTCT
* * * ** ** **
1309573 CCAAGATTTTCCTTATATTTTGAGTTCGTAAG
128 CCACGATTTTCCTTAGAATTAAAGTTTATACC
* * * *
1309605 TTAAATGAAACAAACAAGAATTCT-TATAAAAATCTTCATTCTTTTC-ATGATTAGGCAACCA-A
1 TTAAATGAGACAAACATGGA-TCTATATAAAAATCTCCATTC-TTTCAATGATTAGGC-ACCATA
* * * ** * * * * *** *
1309667 AACGCATTCTCCTTTTTTGTG-TACACAATATTAATGCTTTGATTTCATAAGACAAGTTTTTTTC
63 AACACGTTAT-CTTCATTGGGATACACAATATTGATGCATTGGTTTTGCAAGAAAAGTTTTTTTC
* * **
1309731 TCCATTG-TTTTTCTTAGAAGCAAAGTTTATACC
127 TCCA-CGATTTTCCTTAGAATTAAAGTTTATACC
* * * * * * * * *
1309764 TTAAATGAGACAAACGTGGATCTACACAATAATCTCTATTCTTTTAATGATTGGGCATCGTAAAC
1 TTAAATGAGACAAACATGGATCTATATAAAAATCTCCATTCTTTCAATGATTAGGCACCATAAAC
* * * * * * *
1309829 ACATTAT-TCTCGTTGGGATACATAATATTGACGCATTGGTTATGCAAGAAAAGCTTTTCTT-GC
66 ACGTTATCT-TCATTGGGATACACAATATTGATGCATTGGTTTTGCAAGAAAAG-TTTTTTTCTC
*** * * * * ** * **
1309892 GGTGATTTTTCATATATTTTGAGTTCATAGG
129 CACGATTTTCCTTAGAATTAAAGTTTATACC
* * *
1309923 TTAAATGAAACAAACATGTATTCT-TATAACAATCTTCC-TTCTTTTC-ATGATT-GGCCATCCA
1 TTAAATGAGACAAACATGGA-TCTATATAAAAATC-TCCATTC-TTTCAATGATTAGG-CA-CCA
* * * * * * * ** ***
1309984 -AAACACATTCTCCTT-TTTGGGGTACACGATATTAATTCATTCATTTCATAAGAAAAGTTTTTT
61 TAAACACGTTAT-CTTCATTGGGATACACAATATTGATGCATTGGTTTTGCAAGAAAAGTTTTTT
*
1310047 TCTCCACTG-TTTTCCTTAGAATCAAAGTTTATACC
125 TCTCCAC-GATTTTCCTTAGAATTAAAGTTTATACC
* * * * * ** *
1310082 CTAAATAAGAAAAACAAGGATTTATGCAAAAA-CTCCATTCTTTCAATGATTAGACACCATAAAC
1 TTAAATGAGACAAACATGGATCTATATAAAAATCTCCATTCTTTCAATGATTAGGCACCATAAAC
* * * * * * ** * *
1310146 ACATTATC-TCATT-AGATGCACAATATTG-TCGCATTGGTTATGTAAGAAATGCACTTCTT-GC
66 ACGTTATCTTCATTGGGATACACAATATTGAT-GCATTGGTTTTGCAAGAAAAG-TTTTTTTCTC
* * ** ** **
1310207 CACGATTTT-CTATATATTTTGAGTTCGTATG
129 CACGATTTTCCT-TAGAATTAAAGTTTATACC
* * * * * * *
1310238 TTAAATGATATAAACATGAATTCT-TATAATAATCTTCGTTCTTTTC-TTGATTAGGCAGCCA-A
1 TTAAATGAGACAAACATGGA-TCTATATAAAAATCTCCATTC-TTTCAATGATTAGGCA-CCATA
* * * * ** * *
1310300 AACACATTCTCCTT--TCTGGGATACACAATATTAATGCTTTAATTTCGTAAGAAAAGTTTTTTT
63 AACACGTTAT-CTTCAT-TGGGATACACAATATTGATGCATTGGTTTTGCAAGAAAAGTTTTTTT
* *
1310363 CTCCACCATTTT--TTCGAGAATAAAAGTTTATACC
126 CTCCACGATTTTCCTT--AGAATTAAAGTTTATACC
** * *
1310397 TTAAATGAGACAAACATAGG-TCTATGCAAAAACCTCTATTCTTTCAATGATTAGGCACCATAAA
1 TTAAATGAGACAAACAT-GGATCTATATAAAAATCTCCATTCTTTCAATGATTAGGCACCATAAA
* * * * *
1310461 CACGTTATCTTCATTGGGATGCACAATATTGACGCATTGGTTATGCAAGAAAAGCTTTTCTT-GC
65 CACGTTATCTTCATTGGGATACACAATATTGATGCATTGGTTTTGCAAGAAAAG-TTTTTTTCTC
* * * * ** **
1310525 CATGATTTTCCTTATATTTTAAGTTCGTATG
129 CACGATTTTCCTTAGAATTAAAGTTTATACC
* * * *
1310556 TTAAATGAAAC-AACTTTGGATTCT-TATAAAAATCTTCATTCTTTTAATGATTAGGCAACCA-A
1 TTAAATGAGACAAAC-ATGGA-TCTATATAAAAATCTCCATTCTTTCAATGATTAGGC-ACCATA
* * * * * * * * ***
1310618 AACACATTCTTCTT-ATTTGGATACACAATATTAATACTTTGATATCATAAGAAAAGTTTTTTTC
63 AACACGTT-ATCTTCATTGGGATACACAATATTGATGCATTGGTTTTGCAAGAAAAGTTTTTTTC
** * * * *
1310682 TCTGCCATTTTCGTTAGAA-T-AAGCTTAGACC
127 TCCACGATTTTCCTTAGAATTAAAGTTTATACC
*** * * * **
1310713 TTAAATGAGACAAACATGGATCTACGCAAAAACCTCCATTCTTTTAATGATTGGGCATGATAAAC
1 TTAAATGAGACAAACATGGATCTATATAAAAATCTCCATTCTTTCAATGATTAGGCACCATAAAC
* * * * * * *
1310778 ACATTATCTTCATTGGGATGCACAATATTGATGCATTAGTTATGCAATAAAAGCTTTTCTT-GCC
66 ACGTTATCTTCATTGGGATACACAATATTGATGCATTGGTTTTGCAAGAAAAG-TTTTTTTCTCC
* * ** ** *
1310842 ACGATTTTCCTTATATTTTGAGTTCGTATC
130 ACGATTTTCCTTAGAATTAAAGTTTATACC
* * * * * *
1310872 TTAAATGAAACAAACATGGATTCT-TAGAACAATCTTCATTCTTTCCATGGTTAGGCTACCA-AA
1 TTAAATGAGACAAACATGGA-TCTATATAAAAATCTCCATTCTTTCAATGATTAGGC-ACCATAA
* * * * * * * ** ***
1310935 ACACATTCTCCTT-ATTTGGATACACGATATTAATTCTTTAATTTCATAAGAAAAG-TTTTTTCT
64 ACACGTTAT-CTTCATTGGGATACACAATATTGATGCATTGGTTTTGCAAGAAAAGTTTTTTTCT
* **
1310998 CCACCATTTTCCTTAGAACAAAAGTTTATACC
128 CCACGATTTTCCTTAGAATTAAAGTTTATACC
* ** * *
1311030 TTGAATGAGACAAACATGGATCTATGCAAAAACCTCCATTCTTTCAATGACTAGGCACCATAAAC
1 TTAAATGAGACAAACATGGATCTATATAAAAATCTCCATTCTTTCAATGATTAGGCACCATAAAC
** * ** * * * *
1311095 GTGTTATCTTCATTGGGATGCACAATATTGACACGTTGGTTTTGCAATAAAAGCTTTTCTT-GCC
66 ACGTTATCTTCATTGGGATACACAATATTGATGCATTGGTTTTGCAAGAAAAG-TTTTTTTCTCC
* * ** **
1311159 ACGATTTTCCTTATAATTTGAA-TTCGTATG
130 ACGATTTTCCTTAGAA-TTAAAGTTTATACC
* * * * * *
1311189 TTAAATGAAACAAACATGGATTCT-TATAATAATCTTCTTTATTTCCATGATTAGGCAACCA-AA
1 TTAAATGAGACAAACATGGA-TCTATATAAAAATCTCCATTCTTTCAATGATTAGGC-ACCATAA
* ** * ** *
1311252 ACACGTTCTCCTT-ATT-GGATACATGATATT-ATTGCGTT-GAATT-CATAGGAACAGTTTTTT
64 ACACGTTAT-CTTCATTGGGATACACAATATTGA-TGCATTGGTTTTGCA-A-GAAAAGTTTTTT
* * * * *
1311312 CCTCCACCATTTTCCTTGGAATCAAAGTTTAAACC
125 TCTCCACGATTTTCCTTAGAATTAAAGTTTATACC
* ** * * * *
1311347 TTAAATGAGACAAACTTGGATCTATGCAAAAATCTCTATTTTTTCAATGATTGGGTACCATAAAC
1 TTAAATGAGACAAACATGGATCTATATAAAAATCTCCATTCTTTCAATGATTAGGCACCATAAAC
* * * * * * * * * * *
1311412 ACGTTATCTTC-TTCGAGATGCATAGTATTGACGCATAGATTATGCAAGAAAGGCTTTTCTT-GC
66 ACGTTATCTTCATT-GGGATACACAATATTGATGCATTGGTTTTGCAAGAAAAG-TTTTTTTCTC
* * * ** * **
1311475 CATGATTTTCCTTATATTTTGAGTTTGTATG
129 CACGATTTTCCTTAGAATTAAAGTTTATACC
* * * * *
1311506 TTAAATGAAACAAACATGTATTCT-TATAACAATCTTCATTCTTTCCATGATTAGGCATCCA-AA
1 TTAAATGAGACAAACATGGA-TCTATATAAAAATCTCCATTCTTTCAATGATTAGGCA-CCATAA
** * * * * * * * ***
1311569 ATGCATTCTTCTT-ATTTGGACACA-AGATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTTC
64 ACACGTT-ATCTTCATTGGGATACACA-ATATTGATGCATTGGTTTTGCAAGAAAAGTTTTTTTC
*
1311632 -CCTACCG-TTTTCCTTAGAATAAAAGTTTATACC
127 TCC-A-CGATTTTCCTTAGAATTAAAGTTTATACC
* * * * **
1311665 TTAAATGAGACAAACATCGATCTACAAAAAAATCTCCATTCTTT-AGATGATTGGGCACGGTAAA
1 TTAAATGAGACAAACATGGATCTATATAAAAATCTCCATTCTTTCA-ATGATTAGGCACCATAAA
* * * * * * * * * * * *
1311729 CATGTTATCGTC-TATGGGATGCATAGTATTGATGCATAGGATATGCAAGAAAGGCTATTCTT-G
65 CACGTTATCTTCAT-TGGGATACACAATATTGATGCATTGGTTTTGCAAGAAAAG-TTTTTTTCT
* * ** ** **
1311792 CCACGATTTTCCTTATATTTTGAGTTCGTATG
128 CCACGATTTTCCTTAGAATTAAAGTTTATACC
* * * * * *
1311824 TTAAATGAAACAAACATGGATTCT-TATAATAATCTTCTTTATTTCCATGATTAGGCAACCA-AA
1 TTAAATGAGACAAACATGGA-TCTATATAAAAATCTCCATTCTTTCAATGATTAGGC-ACCATAA
* * ** * ** *
1311887 ACACGTTCTCCTT-ATTTGGATACATGATATT-ATTGCGTT-GAATT-CATAGGAACAGTTTTTT
64 ACACGTTAT-CTTCATTGGGATACACAATATTGA-TGCATTGGTTTTGCA-A-GAAAAGTTTTTT
* * * * *
1311948 CCTCCACCATTTTCCTT-CAATCAAAGTTTAAACC
125 TCTCCACGATTTTCCTTAGAATTAAAGTTTATACC
* ** * * *
1311982 TTAAATGAGACAAACTTGGATCTATGCAAAAATCTCTATTTTTTCAATGATTGGGCACCATAAAC
1 TTAAATGAGACAAACATGGATCTATATAAAAATCTCCATTCTTTCAATGATTAGGCACCATAAAC
* * * * * * * * * *
1312047 ACGTTATCTTC-TTCGAGATGCATAGTATTGACGCATAGGTTATGCAAGAAAGGCTTTTCTT-GC
66 ACGTTATCTTCATT-GGGATACACAATATTGATGCATTGGTTTTGCAAGAAAAG-TTTTTTTCTC
* ** * **
1312110 CACGATTTTCCTTA-TATTCTGAGTTTGTATG
129 CACGATTTTCCTTAGAATT-AAAGTTTATACC
* * * * *
1312141 TTAAATGAAACAAACATGTATTCT-TATAACAATCTTCATTCTTTCCATGATTAGGCATCCA-AA
1 TTAAATGAGACAAACATGGA-TCTATATAAAAATCTCCATTCTTTCAATGATTAGGCA-CCATAA
** * * * * * * *** *
1312204 ATGCATTCTTCTT-ATTTGGATACA-AGATATTAATGCTTTGATTTCATAAGAAAAGTTATTTTC
64 ACACGTT-ATCTTCATTGGGATACACA-ATATTGATGCATTGGTTTTGCAAGAAAAGTTTTTTTC
*
1312267 -CCTACCG-TTTTCCTTAGAATAAAAGTTTATACC
127 TCC-A-CGATTTTCCTTAGAATTAAAGTTTATACC
* * * * *
1312300 TTAAATGAGACAAACATCGATCTACAAAAAAATCTCCATTCTTT-AGATGATTGGGCACGATAAA
1 TTAAATGAGACAAACATGGATCTATATAAAAATCTCCATTCTTTCA-ATGATTAGGCACCATAAA
* * * * * * * ** * * * *
1312364 CATGTTATCTTCTTTGGGATGCATAGTATTGATGCATAGGATAAGCAAGAAAGGCTATTCTT-GC
65 CACGTTATCTTCATTGGGATACACAATATTGATGCATTGGTTTTGCAAGAAAAG-TTTTTTTCTC
* * ** ** **
1312428 CACGATTTTCCTTATATTTTGAGTTCGTATG
129 CACGATTTTCCTTAGAATTAAAGTTTATACC
* * * * *
1312459 TTAAATGAAACAAACATGGATTCT-TATAATAATCTTCATTCTTTCCATGAATAGGCAACCA-AA
1 TTAAATGAGACAAACATGGA-TCTATATAAAAATCTCCATTCTTTCAATGATTAGGC-ACCATAA
*** * * * * * * *
1312522 AGGTGTTCTCCTT-ATTTGGATACACGATATTAATGC-TTTGATTT-CATTGGAAAAG-TTTTTT
64 ACACGTTAT-CTTCATTGGGATACACAATATTGATGCATTGGTTTTGCA--AGAAAAGTTTTTTT
* * *
1312583 CTCCACCG-TTTTCCTTGGAATCAAAGTTTAAACC
126 CTCCA-CGATTTTCCTTAGAATTAAAGTTTATACC
** *
1312617 TTAAATGAGACAAACATGGATCTATGCAAAAATCTCCATTCTTTCAATGATTGGGCACCATAAAC
1 TTAAATGAGACAAACATGGATCTATATAAAAATCTCCATTCTTTCAATGATTAGGCACCATAAAC
** * * * * * * *
1312682 ACGTTATCTTTTTTGGGATGCACAGTATTGACGCATAGGTTATGCAA-AAAAGGCTTTTCTT-GC
66 ACGTTATCTTCATTGGGATACACAATATTGATGCATTGGTTTTGCAAGAAAA-G-TTTTTTTCTC
* * * * ** * **
1312745 CATGATTTTTCTTATATTTTGAGTTTGTATG
129 CACGATTTTCCTTAGAATTAAAGTTTATACC
* * * * *
1312776 TTAAATGAAACAAACATGGATTCT-TACAATAATCTTCATTCTTTCCATGATTAGGCAACCA-AA
1 TTAAATGAGACAAACATGGA-TCTATATAAAAATCTCCATTCTTTCAATGATTAGGC-ACCATAA
** * * * * ** * * * ***
1312839 ATGCATTCTCCTT-TTTTGGATACACGGTATTAATGCTTTGATTTCATAAGAAAAGTTTTTTTCT
64 ACACGTTAT-CTTCATTGGGATACACAATATTGATGCATTGGTTTTGCAAGAAAAGTTTTTTTCT
* * *
1312903 CAATCG-TTTTTCTTAGAA-TACAAGTTTATACT
128 CCA-CGATTTTCCTTAGAATTA-AAGTTTATACC
* * * * *
1312935 TTAAATGAGACAAACATGGATTTACGA-AAAAATGTCCATTCTTTCGATGATTGGGCACCATAAA
1 TTAAATGAGACAAACATGGATCTA-TATAAAAATCTCCATTCTTTCAATGATTAGGCACCATAAA
* * * ** * * * **
1312999 CACGTTATCTTCTTTGGGATGCACAGTATTGACACATAGGTTATGCAAGAAAAGCTTTTCTAAT-
65 CACGTTATCTTCATTGGGATACACAATATTGATGCATTGGTTTTGCAAGAAAAG-TTTTTTTCTC
* * * ** * **
1313063 CACAATTTTCCTTATATTTTGAGTTTGTATG
129 CACGATTTTCCTTAGAATTAAAGTTTATACC
* * ** * *
1313094 TTAAAGGAAACAAACATGGATTCT-TATAGTAATCTTCATTTTTTTC-ATGATTAGGCAACCA-A
1 TTAAATGAGACAAACATGGA-TCTATATAAAAATCTCCA-TTCTTTCAATGATTAGGC-ACCATA
* * * * * *
1313156 AACACATTCTCCTT-TTTGGGATACACGATATTGATGC-TTTGATTT-CATAGGAAAAGTTTTTT
63 AACACGTTAT-CTTCATTGGGATACACAATATTGATGCATTGGTTTTGCA-A-GAAAAGTTTTTT
* ** * *
1313218 TCTCTACTG-TTTTCCTTAGAACAAAAGGTTATACT
125 TCTCCAC-GATTTTCCTTAGAATTAAAGTTTATACC
* * * *
1313253 TTAAATGAGACAAACGTGGATCTACA-ATAAAATCTCCATTCTTTTAATGATTGGGCACCATAAA
1 TTAAATGAGACAAACATGGATCTATATA-AAAATCTCCATTCTTTCAATGATTAGGCACCATAAA
* * * * * *
1313317 CATGTTATC-TCTATTGGGATACATAATATTGACGCATTGGTTATGTAAGAAAAGCTTTT
65 CACGTTATCTTC-ATTGGGATACACAATATTGATGCATTGGTTTTGCAAGAAAAGTTTTT
1313376 CTTGCTACTA
Statistics
Matches: 3024, Mismatches: 1007, Indels: 432
0.68 0.23 0.10
Matches are distributed among these distances:
155 4 0.00
156 73 0.02
157 224 0.07
158 681 0.23
159 1806 0.60
160 229 0.08
161 7 0.00
ACGTcount: A:0.32, C:0.17, G:0.14, T:0.37
Consensus pattern (159 bp):
TTAAATGAGACAAACATGGATCTATATAAAAATCTCCATTCTTTCAATGATTAGGCACCATAAAC
ACGTTATCTTCATTGGGATACACAATATTGATGCATTGGTTTTGCAAGAAAAGTTTTTTTCTCCA
CGATTTTCCTTAGAATTAAAGTTTATACC
Found at i:1309630 original size:318 final size:318
Alignment explanation
Indices: 1308970--1313437 Score: 5629
Period size: 318 Copynumber: 14.1 Consensus size: 318
1308960 TCTACATATA
* *
1308970 TTAAATGAAACAAACATGGGTTCTTATAAAAATCTTCATTCTTTCCATGATTAGGCAACCAAAAC
1 TTAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTCCATGATTAGGCAACCAAAAC
* * *
1309035 ACATTCTCCATT-TTGGGATAAACGATAATAATGCTTTGATTTCATAAGAAAAGTTTTTTTCTCC
66 ACATTCTCC-TTATTTGGATACACGATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTTCTCC
* * * * * *
1309099 ACCATTTTCCTTGGAATCAAAGTTTAAACCTTAAATGAGATAAAAAAGGATCTATGC-AAAATCT
130 ACCATTTTCCTTAGAATAAAAGTTTATACCTTAAATGAGACAAACATGGATCTATGCAAAAATCT
* * * * * * * *
1309163 CCATTCTTTCAATGATTAGGAACCATAAACATGTTATCTTCTTTGGGATGCACAGTATCGATGTA
195 CCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTGGGATGCACAATATTGACGCA
* * * * *
1309228 TAGGATATGCAAGAAAGGCTTTTCTTCCCATGATTTTCCTTATATTTTGAGTTCATATG
260 TAGGTTATGCAAGAAAAGCTTTTCTTGCCACGATTTTCCTTATATTTTGAGTTCGTATG
1309287 TTAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTCCATGATTAGGCAACCAAAAC
1 TTAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTCCATGATTAGGCAACCAAAAC
* * *
1309352 GCGTTCTCCTTATTTGGATACACGATATTAATGATTTGATTTCATAAGAAAAGTTTTTTTCTCCA
66 ACATTCTCCTTATTTGGATACACGATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTTCTCCA
* * *
1309417 CCATTTTCCTTAGAATAAAAGTTTATACCTTGAATGAGACAAACCTGGATCTATGAAAAAATCTC
131 CCATTTTCCTTAGAATAAAAGTTTATACCTTAAATGAGACAAACATGGATCTATGCAAAAATCTC
* * * * * *
1309482 CATTCTTTCAATGATTGAGCACCATAAACATGTTATCTTCGTTGGGATACACAAAATTGATGCAT
196 CATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTGGGATGCACAATATTGACGCAT
* * * *
1309547 TGGTTTTGCAAGAAAAGCTTTTCTTGCCAAGATTTTCCTTATATTTTGAGTTCGTAAG
261 AGGTTATGCAAGAAAAGCTTTTCTTGCCACGATTTTCCTTATATTTTGAGTTCGTATG
* * * *
1309605 TTAAATGAAACAAACAAGAATTCTTATAAAAATCTTCATTCTTTTCATGATTAGGCAACCAAAAC
1 TTAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTCCATGATTAGGCAACCAAAAC
* * * *
1309670 GCATTCTCCTTTTTTGTG-TACACAATATTAATGCTTTGATTTCATAAGACAAGTTTTTTTCTCC
66 ACATTCTCCTTATTTG-GATACACGATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTTCTCC
*** * ** * ** *
1309734 ATTGTTTTTCTTAGAAGCAAAGTTTATACCTTAAATGAGACAAACGTGGATCTACACAATAATCT
130 ACCATTTTCCTTAGAATAAAAGTTTATACCTTAAATGAGACAAACATGGATCTATGCAAAAATCT
* * * * * * * *
1309799 CTATTCTTTTAATGATTGGGCATCGTAAACACATTAT-TCTCGTTGGGATACATAATATTGACGC
195 CCATTCTTTCAATGATTGGGCACCATAAACACGTTATCT-TCATTGGGATGCACAATATTGACGC
* *** * * * *
1309863 ATTGGTTATGCAAGAAAAGCTTTTCTTGCGGTGATTTTTCATATATTTTGAGTTCATAGG
259 ATAGGTTATGCAAGAAAAGCTTTTCTTGCCACGATTTTCCTTATATTTTGAGTTCGTATG
* * * * *
1309923 TTAAATGAAACAAACATGTATTCTTATAACAATCTTCCTTCTTTTCATGATT-GGCCATCCAAAA
1 TTAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTCCATGATTAGG-CAACCAAAA
* * * *
1309987 CACATTCTCCTT-TTTGGGGTACACGATATTAATTCATTCATTTCATAAGAAAAGTTTTTTTCTC
65 CACATTCTCCTTATTT-GGATACACGATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTTCTC
** * * * * * *
1310051 CACTGTTTTCCTTAGAATCAAAGTTTATACCCTAAATAAGAAAAACAAGGATTTATGCAAAAA-C
129 CACCATTTTCCTTAGAATAAAAGTTTATACCTTAAATGAGACAAACATGGATCTATGCAAAAATC
* * * * *
1310115 TCCATTCTTTCAATGATTAGACACCATAAACACATTATC-TCATT-AGATGCACAATATTGTCGC
194 TCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTGGGATGCACAATATTGACGC
* * * **
1310178 ATTGGTTATGTAAGAAATGCACTTCTTGCCACGATTTT-CTATATATTTTGAGTTCGTATG
259 ATAGGTTATGCAAGAAAAGCTTTTCTTGCCACGATTTTCCT-TATATTTTGAGTTCGTATG
* * * * * * *
1310238 TTAAATGATATAAACATGAATTCTTATAATAATCTTCGTTCTTTTCTTGATTAGGCAGCCAAAAC
1 TTAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTCCATGATTAGGCAACCAAAAC
* * * *
1310303 ACATTCTCCTT-TCTGGGATACACAATATTAATGCTTTAATTTCGTAAGAAAAGTTTTTTTCTCC
66 ACATTCTCCTTAT-TTGGATACACGATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTTCTCC
1310367 ACCATTTT--TTCGAGAATAAAAGTTTATACCTTAAATGAGACAAACATAGG-TCTATGCAAAAA
130 ACCATTTTCCTT--AGAATAAAAGTTTATACCTTAAATGAGACAAACAT-GGATCTATGCAAAAA
* * *
1310429 CCTCTATTCTTTCAATGATTAGGCACCATAAACACGTTATCTTCATTGGGATGCACAATATTGAC
192 TCTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTGGGATGCACAATATTGAC
* * *
1310494 GCATTGGTTATGCAAGAAAAGCTTTTCTTGCCATGATTTTCCTTATATTTTAAGTTCGTATG
257 GCATAGGTTATGCAAGAAAAGCTTTTCTTGCCACGATTTTCCTTATATTTTGAGTTCGTATG
* * **
1310556 TTAAATGAAAC-AACTTTGGATTCTTATAAAAATCTTCATTCTTTTAATGATTAGGCAACCAAAA
1 TTAAATGAAACAAAC-ATGGATTCTTATAATAATCTTCATTCTTTCCATGATTAGGCAACCAAAA
* * * * *
1310620 CACATTCTTCTTATTTGGATACACAATATTAATACTTTGATATCATAAGAAAAGTTTTTTTCTCT
65 CACATTCTCCTTATTTGGATACACGATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTTCTCC
* * * * * *
1310685 GCCATTTTCGTTAGAAT--AAGCTTAGACCTTAAATGAGACAAACATGGATCTACGCAAAAACCT
130 ACCATTTTCCTTAGAATAAAAGTTTATACCTTAAATGAGACAAACATGGATCTATGCAAAAATCT
* ** * *
1310748 CCATTCTTTTAATGATTGGGCATGATAAACACATTATCTTCATTGGGATGCACAATATTGATGCA
195 CCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTGGGATGCACAATATTGACGCA
* *
1310813 TTA-GTTATGCAATAAAAGCTTTTCTTGCCACGATTTTCCTTATATTTTGAGTTCGTATC
260 -TAGGTTATGCAAGAAAAGCTTTTCTTGCCACGATTTTCCTTATATTTTGAGTTCGTATG
* * * *
1310872 TTAAATGAAACAAACATGGATTCTTAGAACAATCTTCATTCTTTCCATGGTTAGGCTACCAAAAC
1 TTAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTCCATGATTAGGCAACCAAAAC
* *
1310937 ACATTCTCCTTATTTGGATACACGATATTAATTCTTTAATTTCATAAGAAAAG-TTTTTTCTCCA
66 ACATTCTCCTTATTTGGATACACGATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTTCTCCA
* * *
1311001 CCATTTTCCTTAGAACAAAAGTTTATACCTTGAATGAGACAAACATGGATCTATGCAAAAACCTC
131 CCATTTTCCTTAGAATAAAAGTTTATACCTTAAATGAGACAAACATGGATCTATGCAAAAATCTC
* * ** * *
1311066 CATTCTTTCAATGACTAGGCACCATAAACGTGTTATCTTCATTGGGATGCACAATATTGACACGT
196 CATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTGGGATGCACAATATTGACGCAT
* * * * *
1311131 TGGTTTTGCAATAAAAGCTTTTCTTGCCACGATTTTCCTTATAATTTGAATTCGTATG
261 AGGTTATGCAAGAAAAGCTTTTCTTGCCACGATTTTCCTTATATTTTGAGTTCGTATG
* *
1311189 TTAAATGAAACAAACATGGATTCTTATAATAATCTTCTTTATTTCCATGATTAGGCAACCAAAAC
1 TTAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTCCATGATTAGGCAACCAAAAC
* * * * * * * *
1311254 ACGTTCTCCTTA-TTGGATACATGATATTATTGCGTTGAATTCATAGGAACAGTTTTTTCCTCCA
66 ACATTCTCCTTATTTGGATACACGATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTTCTCCA
* * * *
1311318 CCATTTTCCTTGGAATCAAAGTTTAAACCTTAAATGAGACAAACTTGGATCTATGCAAAAATCTC
131 CCATTTTCCTTAGAATAAAAGTTTATACCTTAAATGAGACAAACATGGATCTATGCAAAAATCTC
* * * * * *
1311383 TATTTTTTCAATGATTGGGTACCATAAACACGTTATCTTC-TTCGAGATGCATAGTATTGACGCA
196 CATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATT-GGGATGCACAATATTGACGCA
* * * *
1311447 TAGATTATGCAAGAAAGGCTTTTCTTGCCATGATTTTCCTTATATTTTGAGTTTGTATG
260 TAGGTTATGCAAGAAAAGCTTTTCTTGCCACGATTTTCCTTATATTTTGAGTTCGTATG
* * * *
1311506 TTAAATGAAACAAACATGTATTCTTATAACAATCTTCATTCTTTCCATGATTAGGCATCCAAAAT
1 TTAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTCCATGATTAGGCAACCAAAAC
* * * *
1311571 GCATTCTTCTTATTTGGACACAAGATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTTC-CCT
66 ACATTCTCCTTATTTGGATACACGATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTTCTCC-
* * ***
1311635 ACCGTTTTCCTTAGAATAAAAGTTTATACCTTAAATGAGACAAACATCGATCTACAAAAAAATCT
130 ACCATTTTCCTTAGAATAAAAGTTTATACCTTAAATGAGACAAACATGGATCTATGCAAAAATCT
** * * * * *
1311700 CCATTCTTT-AGATGATTGGGCACGGTAAACATGTTATCGTC-TATGGGATGCATAGTATTGATG
195 CCATTCTTTCA-ATGATTGGGCACCATAAACACGTTATCTTCAT-TGGGATGCACAATATTGACG
* * *
1311763 CATAGGATATGCAAGAAAGGCTATTCTTGCCACGATTTTCCTTATATTTTGAGTTCGTATG
258 CATAGGTTATGCAAGAAAAGCTTTTCTTGCCACGATTTTCCTTATATTTTGAGTTCGTATG
* *
1311824 TTAAATGAAACAAACATGGATTCTTATAATAATCTTCTTTATTTCCATGATTAGGCAACCAAAAC
1 TTAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTCCATGATTAGGCAACCAAAAC
* * * * * * * *
1311889 ACGTTCTCCTTATTTGGATACATGATATTATTGCGTTGAATTCATAGGAACAGTTTTTTCCTCCA
66 ACATTCTCCTTATTTGGATACACGATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTTCTCCA
* * * *
1311954 CCATTTTCCTT-CAATCAAAGTTTAAACCTTAAATGAGACAAACTTGGATCTATGCAAAAATCTC
131 CCATTTTCCTTAGAATAAAAGTTTATACCTTAAATGAGACAAACATGGATCTATGCAAAAATCTC
* * * * *
1312018 TATTTTTTCAATGATTGGGCACCATAAACACGTTATCTTC-TTCGAGATGCATAGTATTGACGCA
196 CATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATT-GGGATGCACAATATTGACGCA
* * *
1312082 TAGGTTATGCAAGAAAGGCTTTTCTTGCCACGATTTTCCTTATATTCTGAGTTTGTATG
260 TAGGTTATGCAAGAAAAGCTTTTCTTGCCACGATTTTCCTTATATTTTGAGTTCGTATG
* * * *
1312141 TTAAATGAAACAAACATGTATTCTTATAACAATCTTCATTCTTTCCATGATTAGGCATCCAAAAT
1 TTAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTCCATGATTAGGCAACCAAAAC
* * * *
1312206 GCATTCTTCTTATTTGGATACAAGATATTAATGCTTTGATTTCATAAGAAAAGTTATTTTC-CCT
66 ACATTCTCCTTATTTGGATACACGATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTTCTCC-
* * ***
1312270 ACCGTTTTCCTTAGAATAAAAGTTTATACCTTAAATGAGACAAACATCGATCTACAAAAAAATCT
130 ACCATTTTCCTTAGAATAAAAGTTTATACCTTAAATGAGACAAACATGGATCTATGCAAAAATCT
* * * * * *
1312335 CCATTCTTT-AGATGATTGGGCACGATAAACATGTTATCTTCTTTGGGATGCATAGTATTGATGC
195 CCATTCTTTCA-ATGATTGGGCACCATAAACACGTTATCTTCATTGGGATGCACAATATTGACGC
* * * *
1312399 ATAGGATAAGCAAGAAAGGCTATTCTTGCCACGATTTTCCTTATATTTTGAGTTCGTATG
259 ATAGGTTATGCAAGAAAAGCTTTTCTTGCCACGATTTTCCTTATATTTTGAGTTCGTATG
* *
1312459 TTAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTCCATGAATAGGCAACCAAAAG
1 TTAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTCCATGATTAGGCAACCAAAAC
*** **
1312524 GTGTTCTCCTTATTTGGATACACGATATTAATGCTTTGATTTCATTGGAAAAG-TTTTTTCTCCA
66 ACATTCTCCTTATTTGGATACACGATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTTCTCCA
* * * *
1312588 CCGTTTTCCTTGGAATCAAAGTTTAAACCTTAAATGAGACAAACATGGATCTATGCAAAAATCTC
131 CCATTTTCCTTAGAATAAAAGTTTATACCTTAAATGAGACAAACATGGATCTATGCAAAAATCTC
** *
1312653 CATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTTTTTGGGATGCACAGTATTGACGCAT
196 CATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTGGGATGCACAATATTGACGCAT
* * *
1312718 AGGTTATGCAA-AAAAGGCTTTTCTTGCCATGATTTTTCTTATATTTTGAGTTTGTATG
261 AGGTTATGCAAGAAAA-GCTTTTCTTGCCACGATTTTCCTTATATTTTGAGTTCGTATG
* *
1312776 TTAAATGAAACAAACATGGATTCTTACAATAATCTTCATTCTTTCCATGATTAGGCAACCAAAAT
1 TTAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTCCATGATTAGGCAACCAAAAC
* * * *
1312841 GCATTCTCCTTTTTTGGATACACGGTATTAATGCTTTGATTTCATAAGAAAAGTTTTTTTCTCAA
66 ACATTCTCCTTATTTGGATACACGATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTTCTCCA
* * * * * * * * *
1312906 TCGTTTTTCTTAGAATACAAGTTTATACTTTAAATGAGACAAACATGGATTTACGAAAAAATGTC
131 CCATTTTCCTTAGAATAAAAGTTTATACCTTAAATGAGACAAACATGGATCTATGCAAAAATCTC
* * * *
1312971 CATTCTTTCGATGATTGGGCACCATAAACACGTTATCTTCTTTGGGATGCACAGTATTGACACAT
196 CATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTGGGATGCACAATATTGACGCAT
*** * *
1313036 AGGTTATGCAAGAAAAGCTTTTCTAATCACAATTTTCCTTATATTTTGAGTTTGTATG
261 AGGTTATGCAAGAAAAGCTTTTCTTGCCACGATTTTCCTTATATTTTGAGTTCGTATG
* * * *
1313094 TTAAAGGAAACAAACATGGATTCTTATAGTAATCTTCATTTTTTTCATGATTAGGCAACCAAAAC
1 TTAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTCCATGATTAGGCAACCAAAAC
* * *
1313159 ACATTCTCCTT-TTTGGGATACACGATATTGATGCTTTGATTTCATAGGAAAAGTTTTTTTCTCT
66 ACATTCTCCTTATTT-GGATACACGATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTTCTCC
** * * * *
1313223 ACTGTTTTCCTTAGAACAAAAGGTTATACTTTAAATGAGACAAACGTGGATCTA--CAATAAAAT
130 ACCATTTTCCTTAGAATAAAAGTTTATACCTTAAATGAGACAAACATGGATCTATGC-A-AAAAT
* * * *
1313286 CTCCATTCTTTTAATGATTGGGCACCATAAACATGTTATC-TCTATTGGGATACATAATATTGAC
193 CTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTC-ATTGGGATGCACAATATTGAC
* * * *
1313350 GCATTGGTTATGTAAGAAAAGCTTTTCTTGCTACTATTTTCCTTATATTTTGAGTTCGTATG
257 GCATAGGTTATGCAAGAAAAGCTTTTCTTGCCACGATTTTCCTTATATTTTGAGTTCGTATG
** *
1313412 TTATTTGAAACAAACATAGATTCTTA
1 TTAAATGAAACAAACATGGATTCTTA
1313438 AGGTTGCATT
Statistics
Matches: 3622, Mismatches: 479, Indels: 99
0.86 0.11 0.02
Matches are distributed among these distances:
313 2 0.00
314 1 0.00
315 245 0.07
316 341 0.09
317 1232 0.34
318 1786 0.49
319 13 0.00
320 2 0.00
ACGTcount: A:0.32, C:0.17, G:0.14, T:0.37
Consensus pattern (318 bp):
TTAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTCCATGATTAGGCAACCAAAAC
ACATTCTCCTTATTTGGATACACGATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTTCTCCA
CCATTTTCCTTAGAATAAAAGTTTATACCTTAAATGAGACAAACATGGATCTATGCAAAAATCTC
CATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTGGGATGCACAATATTGACGCAT
AGGTTATGCAAGAAAAGCTTTTCTTGCCACGATTTTCCTTATATTTTGAGTTCGTATG
Found at i:1311972 original size:635 final size:634
Alignment explanation
Indices: 1308970--1313437 Score: 5608
Period size: 635 Copynumber: 7.0 Consensus size: 634
1308960 TCTACATATA
* *
1308970 TTAAATGAAACAAACATGGGTTCTTATAAAAATCTTCATTCTTTCCATGATTAGGCAACCAAAAC
1 TTAAATGAAACAAACATGGATTCTTATAACAATCTTCATTCTTTCCATGATTAGGCAACCAAAAC
* * *
1309035 ACATTCTCCATT-TTGGGATA-AACGATAATAATGCTTTGATTTCATAAGAAAAGTTTTTTTCTC
66 GCATTCTCC-TTATTTGGATACAA-GATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTTCTC
* * * * * * * ***
1309098 CACCATTTTCCTTGGAATCAAAGTTTAAACCTTAAATGAGATAAAAAAGGATCTA-TGCAAAATC
129 CACCGTTTTCCTTAGAATAAAAGTTTATACCTTAAATGAGACAAACATGGATCTACAAAAAAATC
* * * * * *
1309162 TCCATTCTTTCAATGATTAGGAACCATAAACATGTTATCTTCTTTGGGATGCACAGTATCGATGT
194 TCCATTCTTT-AATGATTGGGCACCATAAACATGTTATCTTCTATGGGATGCACAGTATTGACGC
* * * * *
1309227 ATAGGATATGCAAGAAAGGCTTTTCTTCCCATGATTTTCCTTATATTTTGAGTTCATATGTTAAA
258 ATAGGTTATGCAAGAAAAGCTTTTCTTGCCACGATTTTCCTTATATTTTGAGTTCGTATGTTAAA
*
1309292 TGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTCCATGATTAGGCAACCAAAACGCGTT
323 TGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTCCATGATTAGGCAACCAAAACACGTT
* *
1309357 CTCCTTATTTGGATACACGATATTAATGATTTGATTTCATAAGAAAAGTTTTTTTCTCCACCATT
388 CTCCTTATTTGGATACACGATATTAATGCTTTGATTTCATAGGAAAAGTTTTTTTCTCCACCATT
* * * * * *
1309422 TTCCTTAGAATAAAAGTTTATACCTTGAATGAGACAAACCTGGATCTATGAAAAAATCTCCATTC
453 TTCCTTAGAATCAAAGTTTAAACCTTAAATGAGACAAACATGGATCTATGCAAAAATCTCCATTT
* * * * * *
1309487 TTTCAATGATTGAGCACCATAAACATGTTATCTTCGTTGGGATACACAAAATTGATGCATTGGTT
518 TTTCAATGATTGGGCACCATAAACACGTTATCTTC-TTGGGATGCACAATATTGACGCATAGGTT
* * *
1309552 TTGCAAGAAAAGCTTTTCTTGCCAAGATTTTCCTTATATTTTGAGTTCGTAAG
582 ATGCAAGAAAAGCTTTTCTTGCCACGATTTTCCTTATATTTTGAGTTCGTATG
* * * *
1309605 TTAAATGAAACAAACAAGAATTCTTATAAAAATCTTCATTCTTTTCATGATTAGGCAACCAAAAC
1 TTAAATGAAACAAACATGGATTCTTATAACAATCTTCATTCTTTCCATGATTAGGCAACCAAAAC
* *
1309670 GCATTCTCCTTTTTTGTG-TACACA-ATATTAATGCTTTGATTTCATAAGACAAGTTTTTTTCTC
66 GCATTCTCCTTATTTG-GATACA-AGATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTTCTC
** * ** * * *
1309733 CATTGTTTTTCTTAGAAGCAAAGTTTATACCTTAAATGAGACAAACGTGGATCTACACAATAATC
129 CACCGTTTTCCTTAGAATAAAAGTTTATACCTTAAATGAGACAAACATGGATCTACAAAAAAATC
* * * ** * * *
1309798 TCTATTCTTTTAATGATTGGGCATCGTAAACACATTAT-TCTCGT-TGGGATACATAATATTGAC
194 TCCATTC-TTTAATGATTGGGCACCATAAACATGTTATCT-TC-TATGGGATGCACAGTATTGAC
* *** * * * *
1309861 GCATTGGTTATGCAAGAAAAGCTTTTCTTGCGGTGATTTTTCATATATTTTGAGTTCATAGGTTA
256 GCATAGGTTATGCAAGAAAAGCTTTTCTTGCCACGATTTTCCTTATATTTTGAGTTCGTATGTTA
* * * * *
1309926 AATGAAACAAACATGTATTCTTATAACAATCTTCCTTCTTTTCATGATT-GGCCATCCAAAACAC
321 AATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTCCATGATTAGG-CAACCAAAACAC
* * * * * *
1309990 ATTCTCCTT-TTTGGGGTACACGATATTAATTCATTCATTTCATAAGAAAAGTTTTTTTCTCCAC
385 GTTCTCCTTATTT-GGATACACGATATTAATGCTTTGATTTCATAGGAAAAGTTTTTTTCTCCAC
** * * * * * *
1310054 TGTTTTCCTTAGAATCAAAGTTTATACCCTAAATAAGAAAAACAAGGATTTATGCAAAAA-CTCC
449 CATTTTCCTTAGAATCAAAGTTTAAACCTTAAATGAGACAAACATGGATCTATGCAAAAATCTCC
* * * * * * *
1310118 ATTCTTTCAATGATTAGACACCATAAACACATTATC-TCATT-AGATGCACAATATTGTCGCATT
514 ATTTTTTCAATGATTGGGCACCATAAACACGTTATCTTC-TTGGGATGCACAATATTGACGCATA
* * **
1310181 GGTTATGTAAGAAATGCACTTCTTGCCACGATTTT-CTATATATTTTGAGTTCGTATG
578 GGTTATGCAAGAAAAGCTTTTCTTGCCACGATTTTCCT-TATATTTTGAGTTCGTATG
* * * * * * * *
1310238 TTAAATGATATAAACATGAATTCTTATAATAATCTTCGTTCTTTTCTTGATTAGGCAGCCAAAAC
1 TTAAATGAAACAAACATGGATTCTTATAACAATCTTCATTCTTTCCATGATTAGGCAACCAAAAC
* * * *
1310303 ACATTCTCCTT-TCTGGGATACACA-ATATTAATGCTTTAATTTCGTAAGAAAAGTTTTTTTCTC
66 GCATTCTCCTTAT-TTGGATACA-AGATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTTCTC
* ***
1310366 CACCATTTT--TTCGAGAATAAAAGTTTATACCTTAAATGAGACAAACATAGG-TCTATGCAAAA
129 CACCGTTTTCCTT--AGAATAAAAGTTTATACCTTAAATGAGACAAACAT-GGATCTACAAAAAA
* * * * *
1310428 ACCTCTATTCTTTCAATGATTAGGCACCATAAACACGTTATCTTC-ATTGGGATGCACAATATTG
191 ATCTCCATTCTTT-AATGATTGGGCACCATAAACATGTTATCTTCTA-TGGGATGCACAGTATTG
* * *
1310492 ACGCATTGGTTATGCAAGAAAAGCTTTTCTTGCCATGATTTTCCTTATATTTTAAGTTCGTATGT
254 ACGCATAGGTTATGCAAGAAAAGCTTTTCTTGCCACGATTTTCCTTATATTTTGAGTTCGTATGT
* * **
1310557 TAAATGAAAC-AACTTTGGATTCTTATAAAAATCTTCATTCTTTTAATGATTAGGCAACCAAAAC
319 TAAATGAAACAAAC-ATGGATTCTTATAATAATCTTCATTCTTTCCATGATTAGGCAACCAAAAC
* * * * * * **
1310621 ACATTCTTCTTATTTGGATACACAATATTAATACTTTGATATCATAAGAAAAGTTTTTTTCTCTG
383 ACGTTCTCCTTATTTGGATACACGATATTAATGCTTTGATTTCATAGGAAAAGTTTTTTTCTCCA
* * * * *
1310686 CCATTTTCGTTAGAAT--AAGCTTAGACCTTAAATGAGACAAACATGGATCTACGCAAAAACCTC
448 CCATTTTCCTTAGAATCAAAGTTTAAACCTTAAATGAGACAAACATGGATCTATGCAAAAATCTC
** * *
1310749 CATTCTTTT-AATGATTGGGCATGATAAACACATTATCTTCATTGGGATGCACAATATTGATGCA
513 CATT-TTTTCAATGATTGGGCACCATAAACACGTTATCTTC-TTGGGATGCACAATATTGACGCA
* *
1310813 TTA-GTTATGCAATAAAAGCTTTTCTTGCCACGATTTTCCTTATATTTTGAGTTCGTATC
576 -TAGGTTATGCAAGAAAAGCTTTTCTTGCCACGATTTTCCTTATATTTTGAGTTCGTATG
* * *
1310872 TTAAATGAAACAAACATGGATTCTTAGAACAATCTTCATTCTTTCCATGGTTAGGCTACCAAAAC
1 TTAAATGAAACAAACATGGATTCTTATAACAATCTTCATTCTTTCCATGATTAGGCAACCAAAAC
* * * *
1310937 ACATTCTCCTTATTTGGATACACGATATTAATTCTTTAATTTCATAAGAAAAG-TTTTTTCTCCA
66 GCATTCTCCTTATTTGGATACAAGATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTTCTCCA
* * * *** *
1311001 CCATTTTCCTTAGAACAAAAGTTTATACCTTGAATGAGACAAACATGGATCTATGCAAAAACCTC
131 CCGTTTTCCTTAGAATAAAAGTTTATACCTTAAATGAGACAAACATGGATCTACAAAAAAATCTC
* * * * * *
1311066 CATTCTTTCAATGACTAGGCACCATAAACGTGTTATCTTC-ATTGGGATGCACAATATTGACACG
196 CATTCTTT-AATGATTGGGCACCATAAACATGTTATCTTCTA-TGGGATGCACAGTATTGACGCA
* * * * *
1311130 TTGGTTTTGCAATAAAAGCTTTTCTTGCCACGATTTTCCTTATAATTTGAATTCGTATGTTAAAT
259 TAGGTTATGCAAGAAAAGCTTTTCTTGCCACGATTTTCCTTATATTTTGAGTTCGTATGTTAAAT
* *
1311195 GAAACAAACATGGATTCTTATAATAATCTTCTTTATTTCCATGATTAGGCAACCAAAACACGTTC
324 GAAACAAACATGGATTCTTATAATAATCTTCATTCTTTCCATGATTAGGCAACCAAAACACGTTC
* * * * * *
1311260 TCCTTA-TTGGATACATGATATTATTGCGTTGAATTCATAGGAACAGTTTTTTCCTCCACCATTT
389 TCCTTATTTGGATACACGATATTAATGCTTTGATTTCATAGGAAAAGTTTTTTTCTCCACCATTT
* * *
1311324 TCCTTGGAATCAAAGTTTAAACCTTAAATGAGACAAACTTGGATCTATGCAAAAATCTCTATTTT
454 TCCTTAGAATCAAAGTTTAAACCTTAAATGAGACAAACATGGATCTATGCAAAAATCTCCATTTT
* * * * *
1311389 TTCAATGATTGGGTACCATAAACACGTTATCTTCTTCGAGATGCATAGTATTGACGCATAGATTA
519 TTCAATGATTGGGCACCATAAACACGTTATCTTCTT-GGGATGCACAATATTGACGCATAGGTTA
* * *
1311454 TGCAAGAAAGGCTTTTCTTGCCATGATTTTCCTTATATTTTGAGTTTGTATG
583 TGCAAGAAAAGCTTTTCTTGCCACGATTTTCCTTATATTTTGAGTTCGTATG
* * *
1311506 TTAAATGAAACAAACATGTATTCTTATAACAATCTTCATTCTTTCCATGATTAGGCATCCAAAAT
1 TTAAATGAAACAAACATGGATTCTTATAACAATCTTCATTCTTTCCATGATTAGGCAACCAAAAC
* *
1311571 GCATTCTTCTTATTTGGACACAAGATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTTC-CCT
66 GCATTCTCCTTATTTGGATACAAGATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTTCTCC-
*
1311635 ACCGTTTTCCTTAGAATAAAAGTTTATACCTTAAATGAGACAAACATCGATCTACAAAAAAATCT
130 ACCGTTTTCCTTAGAATAAAAGTTTATACCTTAAATGAGACAAACATGGATCTACAAAAAAATCT
** * * *
1311700 CCATTCTTTAGATGATTGGGCACGGTAAACATGTTATCGTCTATGGGATGCATAGTATTGATGCA
195 CCATTCTTTA-ATGATTGGGCACCATAAACATGTTATCTTCTATGGGATGCACAGTATTGACGCA
* * *
1311765 TAGGATATGCAAGAAAGGCTATTCTTGCCACGATTTTCCTTATATTTTGAGTTCGTATGTTAAAT
259 TAGGTTATGCAAGAAAAGCTTTTCTTGCCACGATTTTCCTTATATTTTGAGTTCGTATGTTAAAT
* *
1311830 GAAACAAACATGGATTCTTATAATAATCTTCTTTATTTCCATGATTAGGCAACCAAAACACGTTC
324 GAAACAAACATGGATTCTTATAATAATCTTCATTCTTTCCATGATTAGGCAACCAAAACACGTTC
* * * * * *
1311895 TCCTTATTTGGATACATGATATTATTGCGTTGAATTCATAGGAACAGTTTTTTCCTCCACCATTT
389 TCCTTATTTGGATACACGATATTAATGCTTTGATTTCATAGGAAAAGTTTTTTTCTCCACCATTT
* * *
1311960 TCCTT-CAATCAAAGTTTAAACCTTAAATGAGACAAACTTGGATCTATGCAAAAATCTCTATTTT
454 TCCTTAGAATCAAAGTTTAAACCTTAAATGAGACAAACATGGATCTATGCAAAAATCTCCATTTT
* * *
1312024 TTCAATGATTGGGCACCATAAACACGTTATCTTCTTCGAGATGCATAGTATTGACGCATAGGTTA
519 TTCAATGATTGGGCACCATAAACACGTTATCTTCTT-GGGATGCACAATATTGACGCATAGGTTA
* * *
1312089 TGCAAGAAAGGCTTTTCTTGCCACGATTTTCCTTATATTCTGAGTTTGTATG
583 TGCAAGAAAAGCTTTTCTTGCCACGATTTTCCTTATATTTTGAGTTCGTATG
* * *
1312141 TTAAATGAAACAAACATGTATTCTTATAACAATCTTCATTCTTTCCATGATTAGGCATCCAAAAT
1 TTAAATGAAACAAACATGGATTCTTATAACAATCTTCATTCTTTCCATGATTAGGCAACCAAAAC
* *
1312206 GCATTCTTCTTATTTGGATACAAGATATTAATGCTTTGATTTCATAAGAAAAGTTATTTTC-CCT
66 GCATTCTCCTTATTTGGATACAAGATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTTCTCC-
*
1312270 ACCGTTTTCCTTAGAATAAAAGTTTATACCTTAAATGAGACAAACATCGATCTACAAAAAAATCT
130 ACCGTTTTCCTTAGAATAAAAGTTTATACCTTAAATGAGACAAACATGGATCTACAAAAAAATCT
* * * *
1312335 CCATTCTTTAGATGATTGGGCACGATAAACATGTTATCTTCTTTGGGATGCATAGTATTGATGCA
195 CCATTCTTTA-ATGATTGGGCACCATAAACATGTTATCTTCTATGGGATGCACAGTATTGACGCA
* * * *
1312400 TAGGATAAGCAAGAAAGGCTATTCTTGCCACGATTTTCCTTATATTTTGAGTTCGTATGTTAAAT
259 TAGGTTATGCAAGAAAAGCTTTTCTTGCCACGATTTTCCTTATATTTTGAGTTCGTATGTTAAAT
* ***
1312465 GAAACAAACATGGATTCTTATAATAATCTTCATTCTTTCCATGAATAGGCAACCAAAAGGTGTTC
324 GAAACAAACATGGATTCTTATAATAATCTTCATTCTTTCCATGATTAGGCAACCAAAACACGTTC
* *
1312530 TCCTTATTTGGATACACGATATTAATGCTTTGATTTCATTGGAAAAG-TTTTTTCTCCACCGTTT
389 TCCTTATTTGGATACACGATATTAATGCTTTGATTTCATAGGAAAAGTTTTTTTCTCCACCATTT
* *
1312594 TCCTTGGAATCAAAGTTTAAACCTTAAATGAGACAAACATGGATCTATGCAAAAATCTCCATTCT
454 TCCTTAGAATCAAAGTTTAAACCTTAAATGAGACAAACATGGATCTATGCAAAAATCTCCATTTT
* *
1312659 TTCAATGATTGGGCACCATAAACACGTTATCTTTTTTGGGATGCACAGTATTGACGCATAGGTTA
519 TTCAATGATTGGGCACCATAAACACGTTATC-TTCTTGGGATGCACAATATTGACGCATAGGTTA
* * *
1312724 TGCAA-AAAAGGCTTTTCTTGCCATGATTTTTCTTATATTTTGAGTTTGTATG
583 TGCAAGAAAA-GCTTTTCTTGCCACGATTTTCCTTATATTTTGAGTTCGTATG
* * *
1312776 TTAAATGAAACAAACATGGATTCTTACAATAATCTTCATTCTTTCCATGATTAGGCAACCAAAAT
1 TTAAATGAAACAAACATGGATTCTTATAACAATCTTCATTCTTTCCATGATTAGGCAACCAAAAC
* * * *
1312841 GCATTCTCCTTTTTTGGATACACGGTATTAATGCTTTGATTTCATAAGAAAAGTTTTTTTCTCAA
66 GCATTCTCCTTATTTGGATACAAGATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTTCTCCA
* * * * * * *
1312906 TCGTTTTTCTTAGAATACAAGTTTATACTTTAAATGAGACAAACATGGATTTACGAAAAAATGTC
131 CCGTTTTCCTTAGAATAAAAGTTTATACCTTAAATGAGACAAACATGGATCTACAAAAAAATCTC
* * * *
1312971 CATTCTTTCGATGATTGGGCACCATAAACACGTTATCTTCTTTGGGATGCACAGTATTGACACAT
196 CATTCTTT-AATGATTGGGCACCATAAACATGTTATCTTCTATGGGATGCACAGTATTGACGCAT
*** * * *
1313036 AGGTTATGCAAGAAAAGCTTTTCTAATCACAATTTTCCTTATATTTTGAGTTTGTATGTTAAAGG
260 AGGTTATGCAAGAAAAGCTTTTCTTGCCACGATTTTCCTTATATTTTGAGTTCGTATGTTAAATG
* * * *
1313101 AAACAAACATGGATTCTTATAGTAATCTTCATTTTTTTCATGATTAGGCAACCAAAACACATTCT
325 AAACAAACATGGATTCTTATAATAATCTTCATTCTTTCCATGATTAGGCAACCAAAACACGTTCT
* * **
1313166 CCTT-TTTGGGATACACGATATTGATGCTTTGATTTCATAGGAAAAGTTTTTTTCTCTACTGTTT
390 CCTTATTT-GGATACACGATATTAATGCTTTGATTTCATAGGAAAAGTTTTTTTCTCCACCATTT
* * * *
1313230 TCCTTAGAA-CAAAAGGTTATACTTTAAATGAGACAAACGTGGATCTA--CAATAAAATCTCCAT
454 TCCTTAGAATC-AAAGTTTAAACCTTAAATGAGACAAACATGGATCTATGC-A-AAAATCTCCAT
* * * * *
1313292 TCTTTT-AATGATTGGGCACCATAAACATGTTATCTCTATTGGGATACATAATATTGACGCATTG
516 T-TTTTCAATGATTGGGCACCATAAACACGTTATCT-TCTTGGGATGCACAATATTGACGCATAG
* * *
1313356 GTTATGTAAGAAAAGCTTTTCTTGCTACTATTTTCCTTATATTTTGAGTTCGTATG
579 GTTATGCAAGAAAAGCTTTTCTTGCCACGATTTTCCTTATATTTTGAGTTCGTATG
** *
1313412 TTATTTGAAACAAACATAGATTCTTA
1 TTAAATGAAACAAACATGGATTCTTA
1313438 AGGTTGCATT
Statistics
Matches: 3400, Mismatches: 375, Indels: 115
0.87 0.10 0.03
Matches are distributed among these distances:
631 37 0.01
632 97 0.03
633 704 0.21
634 456 0.13
635 1577 0.46
636 517 0.15
637 12 0.00
ACGTcount: A:0.32, C:0.17, G:0.14, T:0.37
Consensus pattern (634 bp):
TTAAATGAAACAAACATGGATTCTTATAACAATCTTCATTCTTTCCATGATTAGGCAACCAAAAC
GCATTCTCCTTATTTGGATACAAGATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTTCTCCA
CCGTTTTCCTTAGAATAAAAGTTTATACCTTAAATGAGACAAACATGGATCTACAAAAAAATCTC
CATTCTTTAATGATTGGGCACCATAAACATGTTATCTTCTATGGGATGCACAGTATTGACGCATA
GGTTATGCAAGAAAAGCTTTTCTTGCCACGATTTTCCTTATATTTTGAGTTCGTATGTTAAATGA
AACAAACATGGATTCTTATAATAATCTTCATTCTTTCCATGATTAGGCAACCAAAACACGTTCTC
CTTATTTGGATACACGATATTAATGCTTTGATTTCATAGGAAAAGTTTTTTTCTCCACCATTTTC
CTTAGAATCAAAGTTTAAACCTTAAATGAGACAAACATGGATCTATGCAAAAATCTCCATTTTTT
CAATGATTGGGCACCATAAACACGTTATCTTCTTGGGATGCACAATATTGACGCATAGGTTATGC
AAGAAAAGCTTTTCTTGCCACGATTTTCCTTATATTTTGAGTTCGTATG
Found at i:1314084 original size:159 final size:157
Alignment explanation
Indices: 1313849--1314939 Score: 537
Period size: 159 Copynumber: 6.9 Consensus size: 157
1313839 TTAGAATCAA
** * * *
1313849 AGTTTATACCTTAAATGAGACAAACATGGA-T-TTATGCAAAAATCTCCACTCTTTCAATGATT-
1 AGTTTATATGTTAAATGAAACAAACATGGATTCTTAT--AAAAATCTTCATTCTTTC-ATGATTA
** * * * * *
1313911 GGGTACCATTAACACGTTATCTTCCTTGGGATGCACAATATTGACGGATTGGTTATGCAAGAAAA
63 GGCAACCA-AAACACGTTATCTTCATTAGGATACACAATATTGACGCATTGGTTAT-CAAGAAAA
* *
1313976 GCTTTTCTTACCTCAATTTTCCTTATATTTTG
126 GCTTTTCTTTCCTCCATTTTCCTTATATTTTG
* * *
1314008 AGTTCATCTGTTAAATGAAACAAACATGCATTCTTATAAAAATCTTCATTCTTTTCATGATTAGG
1 AGTTTATATGTTAAATGAAACAAACATGGATTCTTATAAAAATCTTCATTC-TTTCATGATTAGG
* * * * * *
1314073 CAACCAAAACACATTCTTCTT-ATTTA-GATACACAATATTAATGCTTTGATT-TCATAAGAAAA
65 CAACCAAAACACGTT-ATCTTCA-TTAGGATACACAATATTGACGCATTGGTTATC--AAGAAAA
* * * * * ***
1314135 G-TTTTTTTCTCCACCGTTTTCCTTAAAATAAA
126 GCTTTTCTT-TCCTCCATTTTCCTTATATTTTG
* * * *
1314167 AGTTTATATCTTAAATTAGAA-AAACATGGA-TC-TACGCAAAAATCTCCATTCTTTCAATGATT
1 AGTTTATATGTTAAATGA-AACAAACATGGATTCTTA--TAAAAATCTTCATTCTTTC-ATGATT
* *
1314229 GGGC-ACCATAAACACGTTATCTTCATTAGGATACACAATATTGACGCATTGGTTACCCAAGAAA
62 AGGCAACCA-AAACACGTTATCTTCATTAGGATACACAATATTGACGCATTGGTTA-TCAAGAAA
* *
1314293 AGCTTTTCTTGCCAT-GATTTTCCTTATATTTTG
125 AGCTTTTCTTTCC-TCCATTTTCCTTATATTTTG
** * * * * * **
1314326 AGTTCGTATGCTAAAAGAAACAAACATAGATTCTTATAATAATCTTCAGTCCTTTCATGAGCAGG
1 AGTTTATATGTTAAATGAAACAAACATGGATTCTTATAAAAATCTTCA-TTCTTTCATGATTAGG
* *** * * * * * * **
1314391 CAACCAAAATATACTCTCCTT-TTTAGGATACACGATATTAATGCTTTAATTTAAT-AAGAAAAG
65 CAACCAAAACACGTTAT-CTTCATTAGGATACACAATATTGACGCATT-GGTT-ATCAAGAAAAG
* * ** * ***
1314454 -TTTTTTTCTCCACCATTTTCCTTGGAATCAA
127 CTTTTCTT-TCCTCCATTTTCCTTATATTTTG
* * ** *
1314485 AGTTTATACT-TTAAAT-AAGATAATCATGGATT-TGT-GCAAAATCTCCATTCTTTCAATGATT
1 AGTTTATA-TGTTAAATGAA-ACAAACATGGATTCT-TATAAAAATCTTCATTCTTTC-ATGATT
* * * * * * *
1314546 AGGC-TCCATAAGCACGTTATCTTCGTTGGGATGCACAATATTGACACATTGGTTATGCAGGAAA
62 AGGCAACCA-AAACACGTTATCTTCATTAGGATACACAATATTGACGCATTGGTTAT-CAAGAAA
* **
1314610 AGCTTTTC-TTGCTACGGTTTTCCTTATATTTTG
125 AGCTTTTCTTTCCT-CCATTTTCCTTATATTTTG
* * * * *
1314643 ATTTTGTATGTTAAATGAAACAAACATGGATTCTTCTAATAATCTTTATTCTTTTCATGATTAGG
1 AGTTTATATGTTAAATGAAACAAACATGGATTCTTATAAAAATCTTCATTC-TTTCATGATTAGG
* * * * * * ** * * * **
1314708 CAACCAAAGCACATTCTCCTT-TTTGGGACACATGATATTAATGCTTTAAATTCAT-AAGAAAAG
65 CAACCAAAACACGTTAT-CTTCATTAGGATACACAATATTGACGCATT-GGTT-ATCAAGAAAAG
* ** * ***
1314771 -TTTT-TTCTCCACCATTTTCCTTGGAATCAA
127 CTTTTCTT-TCCTCCATTTTCCTTATATTTTG
** ** * * * *
1314801 AGTTTATACCTTAAATGAGGCAAAAATGGA-T-TTATGCAATAATCTCCATTCTTTCAATGATTG
1 AGTTTATATGTTAAATGAAACAAACATGGATTCTTAT--AAAAATCTTCATTCTTTC-ATGATTA
* * * *
1314864 GGC-ACCATAAACACGTTATCTTCTTTTGGATACACAATATTGATGCATTGGTTATGCAACAAAA
63 GGCAACCA-AAACACGTTATCTTCATTAGGATACACAATATTGACGCATTGGTTAT-CAAGAAAA
*
1314928 GTTTTTCTTTCC
126 GCTTTTCTTTCC
1314940 ATTTATTTCC
Statistics
Matches: 679, Mismatches: 193, Indels: 120
0.68 0.19 0.12
Matches are distributed among these distances:
156 7 0.01
157 34 0.05
158 212 0.31
159 359 0.53
160 57 0.08
161 10 0.01
ACGTcount: A:0.32, C:0.18, G:0.13, T:0.37
Consensus pattern (157 bp):
AGTTTATATGTTAAATGAAACAAACATGGATTCTTATAAAAATCTTCATTCTTTCATGATTAGGC
AACCAAAACACGTTATCTTCATTAGGATACACAATATTGACGCATTGGTTATCAAGAAAAGCTTT
TCTTTCCTCCATTTTCCTTATATTTTG
Found at i:1314677 original size:317 final size:318
Alignment explanation
Indices: 1313795--1314936 Score: 1556
Period size: 318 Copynumber: 3.6 Consensus size: 318
1313785 GCTCACATTG
* *
1313795 ATGCTTTGATTTCAA-AAGAAAAGTTTTTTTCTCCACCGTTTTCCTTAGAATCAAAGTTTATACC
1 ATGCTTTAATTT-AATAAGAAAAGTTTTTTTCTCCACCATTTTCCTTAGAATCAAAGTTTATACC
* * *
1313859 TTAAATGAGACAAACATGGATTTATGCAAAAATCTCCACTCTTTCAATGATTGGGTACCATTAAC
65 TTAAATGAGACAAACATGGATTTATGCAAAAATCTCCATTCTTTCAATGATTGGGCACCATAAAC
* * * *
1313924 ACGTTATCTTCCTTGGGATGCACAATATTGACGGATTGGTTATGCAAGAAAAGCTTTTCTTACCT
130 ACGTTATCTTCATTGGGATACACAATATTGACGCATTGGTTATGCAAGAAAAGCTTTTCTT-GCT
* * * * *
1313989 -CAATTTTCCTTATATTTTGAGTTCATCTGTTAAATGAAACAAACATGCATTCTTATAAAAATCT
194 ACGATTTTCCTTATATTTTGAGTTCGTATGTTAAATGAAACAAACATGGATTCTTATAATAATCT
* *
1314053 TCATTCTTTTCATGATTAGGCAACCAAAACACATTCTTCTTATTTA-GATACACAATATTA
259 TCATTCTTTTCATGATTAGGCAACCAAAACACATTCTCCTT-TTTAGGATACACGATATTA
* * * * * *
1314113 ATGCTTTGATTTCATAAGAAAAGTTTTTTTCTCCACCGTTTTCCTTAAAATAAAAGTTTATATCT
1 ATGCTTTAATTTAATAAGAAAAGTTTTTTTCTCCACCATTTTCCTTAGAATCAAAGTTTATACCT
* * * *
1314178 TAAATTAGAAAAACATGGATCTACGCAAAAATCTCCATTCTTTCAATGATTGGGCACCATAAACA
66 TAAATGAGACAAACATGGATTTATGCAAAAATCTCCATTCTTTCAATGATTGGGCACCATAAACA
* ** * *
1314243 CGTTATCTTCATTAGGATACACAATATTGACGCATTGGTTACCCAAGAAAAGCTTTTCTTGCCAT
131 CGTTATCTTCATTGGGATACACAATATTGACGCATTGGTTATGCAAGAAAAGCTTTTCTTGCTAC
* * *
1314308 GATTTTCCTTATATTTTGAGTTCGTATGCTAAAAGAAACAAACATAGATTCTTATAATAATCTTC
196 GATTTTCCTTATATTTTGAGTTCGTATGTTAAATGAAACAAACATGGATTCTTATAATAATCTTC
* * ** * * *
1314373 AGTCCTTTCATGAGCAGGCAACCAAAATATACTCTCCTTTTTAGGATACACGATATTA
261 ATTCTTTTCATGATTAGGCAACCAAAACACATTCTCCTTTTTAGGATACACGATATTA
* *
1314431 ATGCTTTAATTTAATAAGAAAAGTTTTTTTCTCCACCATTTTCCTTGGAATCAAAGTTTATACTT
1 ATGCTTTAATTTAATAAGAAAAGTTTTTTTCTCCACCATTTTCCTTAGAATCAAAGTTTATACCT
* * * * * * *
1314496 TAAATAAGATAATCATGGATTTGTGC-AAAATCTCCATTCTTTCAATGATTAGGCTCCATAAGCA
66 TAAATGAGACAAACATGGATTTATGCAAAAATCTCCATTCTTTCAATGATTGGGCACCATAAACA
* * * *
1314560 CGTTATCTTCGTTGGGATGCACAATATTGACACATTGGTTATGCAGGAAAAGCTTTTCTTGCTAC
131 CGTTATCTTCATTGGGATACACAATATTGACGCATTGGTTATGCAAGAAAAGCTTTTCTTGCTAC
* * * * *
1314625 GGTTTTCCTTATATTTTGATTTTGTATGTTAAATGAAACAAACATGGATTCTTCTAATAATCTTT
196 GATTTTCCTTATATTTTGAGTTCGTATGTTAAATGAAACAAACATGGATTCTTATAATAATCTTC
* * * *
1314690 ATTCTTTTCATGATTAGGCAACCAAAGCACATTCTCCTTTTTGGGACACATGATATTA
261 ATTCTTTTCATGATTAGGCAACCAAAACACATTCTCCTTTTTAGGATACACGATATTA
* * *
1314748 ATGCTTTAAATTCATAAGAAAAG-TTTTTTCTCCACCATTTTCCTTGGAATCAAAGTTTATACCT
1 ATGCTTTAATTTAATAAGAAAAGTTTTTTTCTCCACCATTTTCCTTAGAATCAAAGTTTATACCT
* * *
1314812 TAAATGAGGCAAAAATGGATTTATGCAATAATCTCCATTCTTTCAATGATTGGGCACCATAAACA
66 TAAATGAGACAAACATGGATTTATGCAAAAATCTCCATTCTTTCAATGATTGGGCACCATAAACA
* * * * *
1314877 CGTTATCTTCTTTTGGATACACAATATTGATGCATTGGTTATGCAACAAAAGTTTTTCTT
131 CGTTATCTTCATTGGGATACACAATATTGACGCATTGGTTATGCAAGAAAAGCTTTTCTT
1314937 TCCATTTATT
Statistics
Matches: 717, Mismatches: 103, Indels: 9
0.86 0.12 0.01
Matches are distributed among these distances:
316 60 0.08
317 308 0.43
318 349 0.49
ACGTcount: A:0.32, C:0.18, G:0.13, T:0.37
Consensus pattern (318 bp):
ATGCTTTAATTTAATAAGAAAAGTTTTTTTCTCCACCATTTTCCTTAGAATCAAAGTTTATACCT
TAAATGAGACAAACATGGATTTATGCAAAAATCTCCATTCTTTCAATGATTGGGCACCATAAACA
CGTTATCTTCATTGGGATACACAATATTGACGCATTGGTTATGCAAGAAAAGCTTTTCTTGCTAC
GATTTTCCTTATATTTTGAGTTCGTATGTTAAATGAAACAAACATGGATTCTTATAATAATCTTC
ATTCTTTTCATGATTAGGCAACCAAAACACATTCTCCTTTTTAGGATACACGATATTA
Found at i:1315764 original size:30 final size:30
Alignment explanation
Indices: 1315728--1315834 Score: 101
Period size: 30 Copynumber: 3.5 Consensus size: 30
1315718 CATTGTTCAT
1315728 TGTATCGATACATTCTGAGTTTTACCTAGA
1 TGTATCGATACATTCTGAGTTTTACCTAGA
* * * * *
1315758 TGTATCGATACATTGTTCA-TTGTATCTATACA
1 TGTATCGATACATT-CTGAGTTTTA-C-CTAGA
* *
1315790 TTGTATCGATATATTCTG-GGTTTACCTAGA
1 -TGTATCGATACATTCTGAGTTTTACCTAGA
1315820 TGTATCGATACATTC
1 TGTATCGATACATTC
1315835 AGTCATTTTT
Statistics
Matches: 59, Mismatches: 13, Indels: 11
0.71 0.16 0.13
Matches are distributed among these distances:
29 14 0.24
30 21 0.36
31 4 0.07
32 7 0.12
33 13 0.22
ACGTcount: A:0.26, C:0.16, G:0.16, T:0.42
Consensus pattern (30 bp):
TGTATCGATACATTCTGAGTTTTACCTAGA
Found at i:1318258 original size:49 final size:50
Alignment explanation
Indices: 1318148--1318260 Score: 147
Period size: 51 Copynumber: 2.3 Consensus size: 50
1318138 TTTCCGAGAA
* * * * *
1318148 GATACTCCAGCCCTGGTTTTATTTCTAAAATACTAATTTTTCACCATCGGG
1 GATACTCCAACCCTGATTTTATTTCCAAAACACTAA-TTTTCACCATCGAG
* *
1318199 GATACTCCAACTCTGATTTTATTTCCAAAACACTAA-TTTCACGATCGAG
1 GATACTCCAACCCTGATTTTATTTCCAAAACACTAATTTTCACCATCGAG
1318248 GATACTCCAACCC
1 GATACTCCAACCC
1318261 CATTATTTCA
Statistics
Matches: 54, Mismatches: 8, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
49 23 0.43
51 31 0.57
ACGTcount: A:0.29, C:0.27, G:0.12, T:0.33
Consensus pattern (50 bp):
GATACTCCAACCCTGATTTTATTTCCAAAACACTAATTTTCACCATCGAG
Found at i:1318284 original size:28 final size:28
Alignment explanation
Indices: 1318245--1318318 Score: 98
Period size: 28 Copynumber: 2.6 Consensus size: 28
1318235 TTTCACGATC
1318245 GAGGATACTCCAACCCCATTATTTCATC-A
1 GAGGATACTCCAACCCCATTATTTC--CGA
*
1318274 -AGGATACTCCAACCCCGTTATTTCCGA
1 GAGGATACTCCAACCCCATTATTTCCGA
*
1318301 GGGGATACTCCAACCCCA
1 GAGGATACTCCAACCCCA
1318319 GCTTTATTTC
Statistics
Matches: 40, Mismatches: 3, Indels: 5
0.83 0.06 0.10
Matches are distributed among these distances:
26 1 0.03
27 1 0.03
28 38 0.95
ACGTcount: A:0.28, C:0.34, G:0.15, T:0.23
Consensus pattern (28 bp):
GAGGATACTCCAACCCCATTATTTCCGA
Found at i:1318368 original size:79 final size:79
Alignment explanation
Indices: 1318275--1318603 Score: 379
Period size: 79 Copynumber: 4.2 Consensus size: 79
1318265 ATTTCATCAA
* * *
1318275 GGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCAGCTTTATTTCTAAAATATTGA
1 GGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCAGCTTTATTTCTAAAACATCGA
1318340 -TTTCTCACAATCGG
66 TTTTC-CACAATCGG
* * * * *
1318354 GGATACTCCAACCCCGTTATTTTCGCA-GGGATACTCCAACCCCGGCCTTATTACTAAAGCATCA
1 GGATACTCCAACCCCGTTATTTTCG-AGGGGATACTCCAACCCCAGCTTTATTTCTAAAACATCG
*
1318418 ATTTTCCACAATTGG
65 ATTTTCCACAATCGG
**
1318433 GGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCAATTTTATTT-TCAAAACATCG
1 GGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCAGCTTTATTTCT-AAAACATCG
* *
1318497 A-TTTCCTATAATCAG
65 ATTTTCC-ACAATCGG
* ** * *
1318512 GGATACTCCAACCCTGTTATTTTTAAGGGGATACTCCAACCCCA-----ATTTCCAAAACATTGA
1 GGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCAGCTTTATTTCTAAAACATCGA
*
1318572 TTTTCCATAATCGG
66 TTTTCCACAATCGG
*
1318586 GGATACTCCAGCCCCGTT
1 GGATACTCCAACCCCGTT
1318604 GTTATCCCTA
Statistics
Matches: 216, Mismatches: 27, Indels: 19
0.82 0.10 0.07
Matches are distributed among these distances:
74 36 0.17
75 5 0.02
78 7 0.03
79 163 0.75
80 5 0.02
ACGTcount: A:0.27, C:0.28, G:0.15, T:0.30
Consensus pattern (79 bp):
GGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCAGCTTTATTTCTAAAACATCGA
TTTTCCACAATCGG
Found at i:1320116 original size:159 final size:156
Alignment explanation
Indices: 1319645--1320675 Score: 428
Period size: 159 Copynumber: 6.5 Consensus size: 156
1319635 ACGCAGTATT
* * * * *
1319645 TTCATTGGGATGCACAATACTGACGCATTGGTTATGCAAGAAAAGCTTTTCTTGCGACAATTTTC
1 TTCATT-GGATGCACAATATTGACGCATTGATTATCCAAAAAAAGCTTTTCTT-CCACAATTTTC
** ** * * * * * *
1319710 CACATATTTTGAGTTTGTATGTTAAATGTACCAAACATGAATTCTTATAATAATCTTCCTTATTT
64 CTTATA-TTTGAGTTCATATGTTAAATGAAACAAACATGGATTCTTATAAAAATCTTCGTTCTTT
* ** *
1319775 TCATGAATAGCCATTCA-AAACACATTCTC
128 TCATG-ATAGGCAACCAGAAACACATTATC
* * * ** * * * **
1319804 GTT-TTTGGGATACACGATATCAATGCATTGATT-T-CATAAGAAAAGTTTTTTTCTCCACCGTT
1 -TTCATT-GGATGCACAATATTGACGCATTGATTATCCA-AA-AAAAGCTTTTCT-TCCACAATT
* *** * *** * * * * * *
1319866 TCCCTTGGA-ATCAAAGTTTATACCCTAAA-AAAGACAAACATAGATT-TACACAAAAATCTCCA
61 TTCCTT--ATATTTGAGTTCATATGTTAAATGAA-ACAAACATGGATTCT-TATAAAAATCTTCG
* *
1319928 TTC-TTTCAATGATTGGGC-ACCATAAACACATTATC
122 TTCTTTTC-ATGA-TAGGCAACCAGAAACACATTATC
* *
1319963 TTCATTGAATTGCACAATATTGACGCATT-AGTTATCCAAGAAAAGCTTTTCTTGCCACAATTTT
1 TTCATTGGA-TGCACAATATTGACGCATTGA-TTATCCAAAAAAAGCTTTTCTT-CCACAATTTT
* * **
1320027 TCTTATATTTTGAGTTCGTATGTTAAATGAAACAAATTTGGATTCTTATAAAAATCTTCGTTCTT
63 CCTTATA-TTTGAGTTCATATGTTAAATGAAACAAACATGGATTCTTATAAAAATCTTCGTTCTT
*
1320092 TTCATGATAAGGCAACCA-AAACACATCCT-TA
127 TTCATGAT-AGGCAACCAGAAACACAT--TATC
* * * * * ** * * * * *
1320123 TTCTTTGGATACACGATACTAATACTTTGATT-TCATAAAAAAAGTTTTTGTCTCCACCATTTTC
1 TTCATTGGATGCACAATATTGACGCATTGATTATC-CAAAAAAAGCTTTTCT-TCCACAATTTTC
** * * ** * * * *
1320187 CTTCGA-ATAAGTTCATACCTTAAATGAGACAAACATGGA-TC-TATGCAAAAA-CCTCAATTCC
64 CTTATATTTGAGTTCATATGTTAAATGAAACAAACATGGATTCTTAT--AAAAATCTTC-GTTCT
* *
1320248 TTTAATGATTGGGC-ACCAGAAACACATTATC
126 TTTCATGA-TAGGCAACCAGAAACACATTATC
* * * * *
1320279 TTCATTGGGATGCAAAATATTGACGCATTGTTTATGCAATAAAAGCTTTTCTTACCACGATTTTC
1 TTCATT-GGATGCACAATATTGACGCATTGATTATCCAAAAAAAGCTTTTCTT-CCACAATTTTC
* * *
1320344 CTTATAATTTGAGTTCATATGTTAAACGAAACAAACATGGATTCTTATAATAATCTTCGTACTTT
64 CTTAT-ATTTGAGTTCATATGTTAAATGAAACAAACATGGATTCTTATAAAAATCTTCGTTCTTT
*
1320409 TCATGATTGGCAACCA-AAACACA-T-TC
128 TCATGATAGGCAACCAGAAACACATTATC
* * * * * * *
1320435 TTCTATTTAGGATACACGATATTAATGCTTTGA-T-TCCATAAGAAAAG-TTTT-TTCTATACCA
1 TTC-A-TT-GGATGCACAATATTGACGCATTGATTATCCA-AA-AAAAGCTTTTCTTC--CACAA
* **** * * * *
1320496 TTTTCCTTAGAGCAAAAGTTTATACT-TTAAATGAGACAAACATGGA-TCTACAAAAAAATCTTC
59 TTTTCCTTATA-TTTGAGTTCATA-TGTTAAATGAAACAAACATGGATTCT-TATAAAAATCTTC
* * * *
1320559 ATTC-TTTCAATGATTGGGC-ACCATAAACACGTTATC
121 GTTCTTTTC-ATGA-TAGGCAACCAGAAACACATTATC
* * * * * * **
1320595 TTCATTGGGATGCACAATATTGATGCATTGGTTTTGCAAGAAAAGCTTTTATTGCCATGATTTTC
1 TTCATT-GGATGCACAATATTGACGCATTGATTATCCAAAAAAAGCTTTTCTT-CCACAATTTTC
1320660 CTTATATTTTGAGTTC
64 CTTATA-TTTGAGTTC
1320676 GTATTGTAGA
Statistics
Matches: 630, Mismatches: 179, Indels: 125
0.67 0.19 0.13
Matches are distributed among these distances:
155 5 0.01
156 34 0.05
157 161 0.26
158 96 0.15
159 284 0.45
160 42 0.07
161 8 0.01
ACGTcount: A:0.33, C:0.18, G:0.13, T:0.36
Consensus pattern (156 bp):
TTCATTGGATGCACAATATTGACGCATTGATTATCCAAAAAAAGCTTTTCTTCCACAATTTTCCT
TATATTTGAGTTCATATGTTAAATGAAACAAACATGGATTCTTATAAAAATCTTCGTTCTTTTCA
TGATAGGCAACCAGAAACACATTATC
Found at i:1320156 original size:318 final size:316
Alignment explanation
Indices: 1319569--1320679 Score: 1383
Period size: 316 Copynumber: 3.5 Consensus size: 316
1319559 ACGTTGTGAC
* ** * * * *
1319569 ACCTTAAATGAGACAAACATGGATTTACGTAATAATCTCCATTCTTTTAATAATTGGGCACCGTA
1 ACCTTAAATGAGACAAACATGGATCTACACAAAAATCTCCATTCTTTCAATGATTGGGCACCATA
* * * *
1319634 AACGCAGTATTTTCATTGGGATGCACAATACTGACGCATTGGTTATGCAAGAAAAGCTTTTCTTG
66 AACACATTATCTTCATTGGGATGCACAATATTGACGCATTGGTTATGCAAGAAAAGCTTTTCTTG
* ** * * * *
1319699 CGACAATTTTCCACATATTTTGAGTTTGTATGTTAAATGTACCAAACATGAATTCTTATAATAAT
131 CCACAATTTTCCTTATATTTTGAGTTCGTATGTTAAATGAAACAAACATGGATTCTTATAATAAT
* * * ** **
1319764 CTTCCTTATTTTCATGA-ATAGCCATTCAAAACACATTCTCGTTTTTGGGATACACGATATCAAT
196 CTTCGTTCTTTTCATGATA-AGGCAACCAAAACACATTCTTATTTTT-GGATACACGATAT-AAT
* * * *
1319828 GCATTGATTTCATAAGAAAAGTTTTTTTCTCCACCGTTTCCCTTGGAATCAAAGTTTAT
258 GCTTTGATTTCATAAGAAAAGTTTTTTTCTCCACCATTTTCCTTAGAATCAAAGTTTAT
* ** * *
1319887 ACCCTAAAAAAGACAAACATAGATTTACACAAAAATCTCCATTCTTTCAATGATTGGGCACCATA
1 ACCTTAAATGAGACAAACATGGATCTACACAAAAATCTCCATTCTTTCAATGATTGGGCACCATA
* * *
1319952 AACACATTATCTTCATT-GAATTGCACAATATTGACGCATTAGTTATCCAAGAAAAGCTTTTCTT
66 AACACATTATCTTCATTGGGA-TGCACAATATTGACGCATTGGTTATGCAAGAAAAGCTTTTCTT
* ** *
1320016 GCCACAATTTTTCTTATATTTTGAGTTCGTATGTTAAATGAAACAAATTTGGATTCTTATAAAAA
130 GCCACAATTTTCCTTATATTTTGAGTTCGTATGTTAAATGAAACAAACATGGATTCTTATAATAA
*
1320081 TCTTCGTTCTTTTCATGATAAGGCAACCAAAACACATCCTTATTCTTTGGATACACGATACTAAT
195 TCTTCGTTCTTTTCATGATAAGGCAACCAAAACACATTCTTATT-TTTGGATACACGATA-TAAT
* * * * *
1320146 ACTTTGATTTCATAAAAAAAGTTTTTGTCTCCACCATTTTCCTTCGAAT--AAGTTCAT
258 GCTTTGATTTCATAAGAAAAGTTTTTTTCTCCACCATTTTCCTTAGAATCAAAGTTTAT
** * * *
1320203 ACCTTAAATGAGACAAACATGGATCTATGCAAAAACCTCAATTCCTTT-AATGATTGGGCACCAG
1 ACCTTAAATGAGACAAACATGGATCTACACAAAAATCTCCATT-CTTTCAATGATTGGGCACCAT
* * *
1320267 AAACACATTATCTTCATTGGGATGCAAAATATTGACGCATTGTTTATGCAATAAAAGCTTTTCTT
65 AAACACATTATCTTCATTGGGATGCACAATATTGACGCATTGGTTATGCAAGAAAAGCTTTTCTT
* * * * *
1320332 ACCACGATTTTCCTTATAATTTGAGTTCATATGTTAAACGAAACAAACATGGATTCTTATAATAA
130 GCCACAATTTTCCTTATATTTTGAGTTCGTATGTTAAATGAAACAAACATGGATTCTTATAATAA
* * * *
1320397 TCTTCGTACTTTTCATGAT-TGGCAACCAAAACACATTCTTCTATTTAGGATACACGATATTAAT
195 TCTTCGTTCTTTTCATGATAAGGCAACCAAAACACATTCTTAT-TTTTGGATACACGATA-TAAT
* ** *
1320461 GCTTTGATTCCATAAGAAAAG-TTTTTTCTATACCATTTTCCTTAG-AGCAAAAGTTTAT
258 GCTTTGATTTCATAAGAAAAGTTTTTTTCTCCACCATTTTCCTTAGAATC-AAAGTTTAT
* * *
1320519 ACTTTAAATGAGACAAACATGGATCTACAAAAAAATCTTCATTCTTTCAATGATTGGGCACCATA
1 ACCTTAAATGAGACAAACATGGATCTACACAAAAATCTCCATTCTTTCAATGATTGGGCACCATA
* * * *
1320584 AACACGTTATCTTCATTGGGATGCACAATATTGATGCATTGGTTTTGCAAGAAAAGCTTTTATTG
66 AACACATTATCTTCATTGGGATGCACAATATTGACGCATTGGTTATGCAAGAAAAGCTTTTCTTG
**
1320649 CCATGATTTTCCTTATATTTTGAGTTCGTAT
131 CCACAATTTTCCTTATATTTTGAGTTCGTAT
1320680 TGTAGACACC
Statistics
Matches: 679, Mismatches: 103, Indels: 24
0.84 0.13 0.03
Matches are distributed among these distances:
313 1 0.00
314 20 0.03
315 60 0.09
316 331 0.49
317 8 0.01
318 254 0.37
319 5 0.01
ACGTcount: A:0.33, C:0.18, G:0.13, T:0.36
Consensus pattern (316 bp):
ACCTTAAATGAGACAAACATGGATCTACACAAAAATCTCCATTCTTTCAATGATTGGGCACCATA
AACACATTATCTTCATTGGGATGCACAATATTGACGCATTGGTTATGCAAGAAAAGCTTTTCTTG
CCACAATTTTCCTTATATTTTGAGTTCGTATGTTAAATGAAACAAACATGGATTCTTATAATAAT
CTTCGTTCTTTTCATGATAAGGCAACCAAAACACATTCTTATTTTTGGATACACGATATAATGCT
TTGATTTCATAAGAAAAGTTTTTTTCTCCACCATTTTCCTTAGAATCAAAGTTTAT
Found at i:1320572 original size:157 final size:154
Alignment explanation
Indices: 1320049--1320588 Score: 386
Period size: 157 Copynumber: 3.4 Consensus size: 154
1320039 AGTTCGTATG
* ** * * **
1320049 TTAAATGAAACAAATTTGGATTCT-TATAAAAATCTTCGTTCTTTTCATGATAAGGCAACCA-AA
1 TTAAATGAGACAAACATGGA-TCTATAAAAAAATCTTCATTCTTTTCATGATTGGGC-ACCAGAA
* * * * *
1320112 ACACATCCTTAT-TCTTTGGATACACGATACTAATACTTTGATTTCATAAAAAAAGTTTTTGTCT
64 ACACATTCTTCTAT-TTAGGATACACGATATTAATGCTTTGA-TTCATAAAAAAAGTTTTT-TCT
* * *
1320176 CCACCATTTTCCTTCGAATAAGTTCATACC
126 -TACCATTTTCCTTAGAATAAGTTCATACT
** * * *
1320206 TTAAATGAGACAAACATGGATCTATGCAAAAA-CCTCAATTCCTTTAATGATTGGGCACCAGAAA
1 TTAAATGAGACAAACATGGATCTATAAAAAAATCTTC-ATTCTTTTCATGATTGGGCACCAGAAA
* * ** * * * * * *
1320270 CACATTATCTTC-A-TTGGGATGCAAAATATTGACGCATTG-TTTATGCAATAAAAG-CTTTTCT
65 CACA-T-TCTTCTATTTAGGATACACGATATTAATGCTTTGATTCAT--AAAAAAAGTTTTTTCT
* *
1320331 TACCACGATTTTCCTTATAATTTGAGTTCATA-T
126 TA-C-C-ATTTTCCTTAGAA--TAAGTTCATACT
* * * * * *
1320364 GTTAAACGAAACAAACATGGATTCT-TATAATAATCTTCGTACTTTTCATGATT-GGCAACCA-A
1 -TTAAATGAGACAAACATGGA-TCTATAAAAAAATCTTCATTCTTTTCATGATTGGGC-ACCAGA
*
1320426 AACACATTCTTCTATTTAGGATACACGATATTAATGCTTTGATTCCATAAGAAAAGTTTTTTCTA
63 AACACATTCTTCTATTTAGGATACACGATATTAATGCTTTGATT-CATAAAAAAAGTTTTTTCT-
* *
1320491 TACCATTTTCCTTAGAGCAAAAGTTTATACT
126 TACCATTTTCCTTAGA--ATAAGTTCATACT
* *
1320522 TTAAATGAGACAAACATGGATCTACAAAAAAATCTTCATTC-TTTCAATGATTGGGCACCATAAA
1 TTAAATGAGACAAACATGGATCTATAAAAAAATCTTCATTCTTTTC-ATGATTGGGCACCAGAAA
1320586 CAC
65 CAC
1320589 GTTATCTTCA
Statistics
Matches: 292, Mismatches: 61, Indels: 59
0.71 0.15 0.14
Matches are distributed among these distances:
154 1 0.00
155 8 0.03
156 26 0.09
157 139 0.48
158 48 0.16
159 60 0.21
160 10 0.03
ACGTcount: A:0.35, C:0.18, G:0.12, T:0.35
Consensus pattern (154 bp):
TTAAATGAGACAAACATGGATCTATAAAAAAATCTTCATTCTTTTCATGATTGGGCACCAGAAAC
ACATTCTTCTATTTAGGATACACGATATTAATGCTTTGATTCATAAAAAAAGTTTTTTCTTACCA
TTTTCCTTAGAATAAGTTCATACT
Found at i:1321075 original size:13 final size:13
Alignment explanation
Indices: 1321057--1321081 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1321047 ATTACTCAAA
1321057 TGTATCGATACAT
1 TGTATCGATACAT
1321070 TGTATCGATACA
1 TGTATCGATACA
1321082 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1325713 original size:236 final size:236
Alignment explanation
Indices: 1325300--1325758 Score: 846
Period size: 236 Copynumber: 1.9 Consensus size: 236
1325290 TCTACTATTT
1325300 TCGTATGATTGCTAACTAAGTTTTTGTTTGTTTTTGCTTGATACATGCATGCATCTCATCATGAT
1 TCGTATGATTGCTAACTAAGTTTTTGTTTGTTTTTGCTTGATACATGCATGCATCTCATCATGAT
* * * * *
1325365 TATCATTATTTCGGGACAATTGTTCTGGTTCGATGTTCAGCAAGGGGCATCATCTATGGAGCATC
66 CATCATTATTTCGAGACAATTGTTCTAGTTCAATGTTCAACAAGGGGCATCATCTATGGAGCATC
*
1325430 AGTCAACCTCCACTTTTGAGTATTTTTAAAACGTCAGAACATGGTCAGAAGGTCGCCAGTACCGG
131 AGTCAACCTCCACTTTTGAGTATTTTTAAAACGTCAAAACATGGTCAGAAGGTCGCCAGTACCGG
*
1325495 GATGGGGACATCTTGAAACCCGATTATGATCATCATTATAA
196 GATGAGGACATCTTGAAACCCGATTATGATCATCATTATAA
1325536 TCGTATGATTGCTAACTAAGTTTTTGTTTGTTTTTGCTTGATACATGCATGCATCTCATCATGAT
1 TCGTATGATTGCTAACTAAGTTTTTGTTTGTTTTTGCTTGATACATGCATGCATCTCATCATGAT
1325601 CATCATTATTTCGAGACAATTGTTCTAGTTCAATGTTCAACAAGGGGCATCATCTATGGAGCATC
66 CATCATTATTTCGAGACAATTGTTCTAGTTCAATGTTCAACAAGGGGCATCATCTATGGAGCATC
*
1325666 AGTCAACTTCCACTTTTGAGTATTTTTAAAACGTCAAAACATGGTCAGAAGGTCGCCAGTACCGG
131 AGTCAACCTCCACTTTTGAGTATTTTTAAAACGTCAAAACATGGTCAGAAGGTCGCCAGTACCGG
1325731 GATGAGGACATCTTGAAACCCGATTATG
196 GATGAGGACATCTTGAAACCCGATTATG
1325759 TCTCAGAAAT
Statistics
Matches: 215, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
236 215 1.00
ACGTcount: A:0.27, C:0.19, G:0.20, T:0.34
Consensus pattern (236 bp):
TCGTATGATTGCTAACTAAGTTTTTGTTTGTTTTTGCTTGATACATGCATGCATCTCATCATGAT
CATCATTATTTCGAGACAATTGTTCTAGTTCAATGTTCAACAAGGGGCATCATCTATGGAGCATC
AGTCAACCTCCACTTTTGAGTATTTTTAAAACGTCAAAACATGGTCAGAAGGTCGCCAGTACCGG
GATGAGGACATCTTGAAACCCGATTATGATCATCATTATAA
Found at i:1335043 original size:19 final size:19
Alignment explanation
Indices: 1335017--1335160 Score: 166
Period size: 21 Copynumber: 7.3 Consensus size: 19
1335007 CACAAACCAA
1335017 AAAAAAAACAAAAAAAAACAC
1 AAAAAAAAC-AAAAAAAA-AC
*
1335038 AAAAAAAACAAAAAAAACAAA
1 AAAAAAAAC-AAAAAAA-AAC
1335059 AAACAAAAACAAAAAAAAAC
1 AAA-AAAAACAAAAAAAAAC
1335079 AAAAAAAACAAAAAAAAAC
1 AAAAAAAACAAAAAAAAAC
1335098 AAAAAAAAAACAAAAAAAAA-
1 --AAAAAAAACAAAAAAAAAC
1335118 AACAAAAAACAAAAAAAAAC
1 AA-AAAAAACAAAAAAAAAC
* * *
1335138 ACAAAAAA-AAACAACAAC
1 AAAAAAAACAAAAAAAAAC
1335156 AAAAA
1 AAAAA
1335161 GGGTCCGGAT
Statistics
Matches: 111, Mismatches: 6, Indels: 15
0.84 0.05 0.11
Matches are distributed among these distances:
18 14 0.13
19 38 0.34
20 6 0.05
21 46 0.41
22 7 0.06
ACGTcount: A:0.88, C:0.12, G:0.00, T:0.00
Consensus pattern (19 bp):
AAAAAAAACAAAAAAAAAC
Found at i:1335061 original size:42 final size:41
Alignment explanation
Indices: 1335010--1335160 Score: 200
Period size: 41 Copynumber: 3.6 Consensus size: 41
1335000 CGTCCTCCAC
*
1335010 AAACCAAAAAAAAAACAAAAAAAAACACAAAAAAAACAAAAA
1 AAACAAAAAAAAAAACAAAAAAAAA-ACAAAAAAAACAAAAA
1335052 AAACAAAAAACAAAAAC-AAAAAAAAACAAAAAAAACAAAAA
1 AAACAAAAAA-AAAAACAAAAAAAAAACAAAAAAAACAAAAA
*
1335093 AAA-ACAAAAAAAAAACAAAAAAAAAA-ACAAAAAACAAAAAA
1 AAACA-AAAAAAAAAACAAAAAAAAAACAAAAAAAAC-AAAAA
* *
1335134 AAACACAAAAAAAAACAACAACAAAAA
1 AAACAAAAAAAAAAACAA-AAAAAAAA
1335161 GGGTCCGGAT
Statistics
Matches: 99, Mismatches: 4, Indels: 12
0.86 0.03 0.10
Matches are distributed among these distances:
40 15 0.15
41 53 0.54
42 25 0.25
43 6 0.06
ACGTcount: A:0.87, C:0.13, G:0.00, T:0.00
Consensus pattern (41 bp):
AAACAAAAAAAAAAACAAAAAAAAAACAAAAAAAACAAAAA
Found at i:1335083 original size:52 final size:51
Alignment explanation
Indices: 1335015--1335147 Score: 209
Period size: 51 Copynumber: 2.6 Consensus size: 51
1335005 TCCACAAACC
1335015 AAAAAAAAAACAAAAAAAAACACAAAAAAAACAAAAAAAACAA-AAAACAAAA
1 AAAAAAAAAACAAAAAAAAACACAAAAAAAACAAAAAAAA-AACAAAA-AAAA
1335067 ACAAAAAAAAAC-AAAAAAAACA-AAAAAAAACAAAAAAAAAACAAAAAAAA
1 A-AAAAAAAAACAAAAAAAAACACAAAAAAAACAAAAAAAAAACAAAAAAAA
*
1335117 AAACAAAAAACAAAAAAAAACACAAAAAAAA
1 AAAAAAAAAACAAAAAAAAACACAAAAAAAA
1335148 ACAACAACAA
Statistics
Matches: 76, Mismatches: 1, Indels: 9
0.88 0.01 0.10
Matches are distributed among these distances:
49 9 0.12
50 17 0.22
51 29 0.38
52 11 0.14
53 10 0.13
ACGTcount: A:0.89, C:0.11, G:0.00, T:0.00
Consensus pattern (51 bp):
AAAAAAAAAACAAAAAAAAACACAAAAAAAACAAAAAAAAAACAAAAAAAA
Found at i:1335148 original size:52 final size:53
Alignment explanation
Indices: 1335010--1335160 Score: 215
Period size: 52 Copynumber: 2.9 Consensus size: 53
1335000 CGTCCTCCAC
*
1335010 AAACCAAAA-AAAAAACAAAAAAAAACAC-AAAAAAAAC--AAAAAAAACAAA
1 AAACAAAAACAAAAAACAAAAAAAAACACAAAAAAAAACAAAAAAAAAACAAA
*
1335059 AAACAAAAACAAAAAA-AAACAAAAAAAACAAAAAAAAACAAAAAAAAAACAAA
1 AAACAAAAACAAAAAACAAA-AAAAAACACAAAAAAAAACAAAAAAAAAACAAA
*
1335112 AAA-AAAAACAAAAAACAAAAAAAAACACAAAAAAAAACAACAACAAAAA
1 AAACAAAAACAAAAAACAAAAAAAAACACAAAAAAAAACAA-AAAAAAAA
1335161 GGGTCCGGAT
Statistics
Matches: 91, Mismatches: 4, Indels: 10
0.87 0.04 0.10
Matches are distributed among these distances:
49 11 0.12
50 14 0.15
51 9 0.10
52 32 0.35
53 25 0.27
ACGTcount: A:0.87, C:0.13, G:0.00, T:0.00
Consensus pattern (53 bp):
AAACAAAAACAAAAAACAAAAAAAAACACAAAAAAAAACAAAAAAAAAACAAA
Found at i:1335151 original size:10 final size:10
Alignment explanation
Indices: 1335016--1335147 Score: 187
Period size: 10 Copynumber: 12.9 Consensus size: 10
1335006 CCACAAACCA
1335016 AAAAAAAAAC
1 AAAAAAAAAC
1335026 AAAAAAAAAC
1 AAAAAAAAAC
1335036 ACAAAAAAAAC
1 A-AAAAAAAAC
*
1335047 AAAAAAAACAA
1 AAAAAAAA-AC
1335058 AAAACAAAAAC
1 AAAA-AAAAAC
1335069 AAAAAAAAAC
1 AAAAAAAAAC
1335079 -AAAAAAAAC
1 AAAAAAAAAC
1335088 AAAAAAAAAC
1 AAAAAAAAAC
1335098 AAAAAAAAAAC
1 -AAAAAAAAAC
1335109 AAAAAAAAA-
1 AAAAAAAAAC
*
1335118 AACAAAAAAC
1 AAAAAAAAAC
1335128 AAAAAAAAAC
1 AAAAAAAAAC
1335138 ACAAAAAAAA
1 A-AAAAAAAA
1335148 ACAACAACAA
Statistics
Matches: 111, Mismatches: 4, Indels: 13
0.87 0.03 0.10
Matches are distributed among these distances:
9 17 0.15
10 52 0.47
11 38 0.34
12 4 0.04
ACGTcount: A:0.89, C:0.11, G:0.00, T:0.00
Consensus pattern (10 bp):
AAAAAAAAAC
Found at i:1335160 original size:1 final size:1
Alignment explanation
Indices: 1335015--1335148 Score: 133
Period size: 1 Copynumber: 134.0 Consensus size: 1
1335005 TCCACAAACC
* * * * * * * *
1335015 AAAAAAAAAACAAAAAAAAACACAAAAAAAACAAAAAAAACAAAAAACAAAAACAAAAAAAAACA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * * * * * *
1335080 AAAAAAACAAAAAAAAACAAAAAAAAAACAAAAAAAAAAACAAAAAACAAAAAAAAACACAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1335145 AAAA
1 AAAA
1335149 CAACAACAAA
Statistics
Matches: 103, Mismatches: 30, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
1 103 1.00
ACGTcount: A:0.89, C:0.11, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:1336682 original size:29 final size:28
Alignment explanation
Indices: 1336582--1336945 Score: 417
Period size: 29 Copynumber: 12.6 Consensus size: 28
1336572 TTCCTCACCT
*
1336582 TTTCCAAAGCCCACAAGTCAGTGGCAAC
1 TTTCCAAAGCCCACAAGTCAGTGGCATC
* * *
1336610 CTTCAAAAGCCCACAAGTCAGTGGCACCTT
1 TTTCCAAAGCCCACAAGTCAGTGGCA--TC
1336640 TTTCCAAAGCCCACAAGTCAGTGGCATC
1 TTTCCAAAGCCCACAAGTCAGTGGCATC
1336668 ATTTCCAAAGCCCACAAGTCAGTGGCATC
1 -TTTCCAAAGCCCACAAGTCAGTGGCATC
* *
1336697 ATTTCCAAAGCCCATAAGTCAGTGGCAAC
1 -TTTCCAAAGCCCACAAGTCAGTGGCATC
* *
1336726 CTTCAAAAG-CCACAAGTCAGTGGCATC
1 TTTCCAAAGCCCACAAGTCAGTGGCATC
*
1336753 TTTTCCAAAGCCCACAAGTCAGTGGCACCC
1 -TTTCCAAAGCCCACAAGTCAGTGGCA-TC
1336783 TTTTCCAAAGCCCACAAG-CTAGTGGCATC
1 -TTTCCAAAGCCCACAAGTC-AGTGGCATC
*
1336812 ATTTCCAAAGCCCACAAGTCAGTGGCAAC
1 -TTTCCAAAGCCCACAAGTCAGTGGCATC
* * *
1336841 CTTCAAAAGCCCACAAGTTAGTGGCACTC
1 TTTCCAAAGCCCACAAGTCAGTGGCA-TC
*
1336870 TTTTCCAAAGCCCACAAGTCAGTGGTATC
1 -TTTCCAAAGCCCACAAGTCAGTGGCATC
* * * *
1336899 TTCTCAAAAGCCCATAAGTTAGTGGCAAC
1 TT-TCCAAAGCCCACAAGTCAGTGGCATC
* * *
1336928 CTTCAAAAGCACACAAGT
1 TTTCCAAAGCCCACAAGT
1336946 TGGTGCAACC
Statistics
Matches: 290, Mismatches: 35, Indels: 22
0.84 0.10 0.06
Matches are distributed among these distances:
27 16 0.06
28 78 0.27
29 123 0.42
30 73 0.25
ACGTcount: A:0.32, C:0.30, G:0.17, T:0.21
Consensus pattern (28 bp):
TTTCCAAAGCCCACAAGTCAGTGGCATC
Found at i:1336971 original size:144 final size:145
Alignment explanation
Indices: 1336578--1336946 Score: 482
Period size: 144 Copynumber: 2.6 Consensus size: 145
1336568 GACATTCCTC
* *
1336578 ACCTTTTCCAAAGCCCACAAGTCAGTGGCAACCTTCAAAAGCCCACAAGTCAGTGGC-ACCTTTT
1 ACCTTTTCCAAAGCCCACAAGTCAGTGGCATCTTTCAAAAGCCCACAAGTCAGTGGCAACC--TT
* * * *
1336642 TCCAAAGCCCACAAGTCAGTGGCATCATTTCCAAAGCCCACAAGTCAGTGGCATCATTTCCAAAG
64 TCCAAAGCCCACAAGTTAGTGGCATCATTTCCAAAGCCCACAAGTCAGTGGCAACACTTCAAAAG
*
1336707 CCCATAAGTCAGTGGCA
129 CCCACAAGTCAGTGGCA
* * *
1336724 ACC--TTCAAAAG-CCACAAGTCAGTGGCATCTTTTCCAAAGCCCACAAGTCAGTGGCACCCTTT
1 ACCTTTTCCAAAGCCCACAAGTCAGTGGCATC-TTTCAAAAGCCCACAAGTCAGTGGCAACC-TT
*
1336786 TCCAAAGCCCACAAGCTAGTGGCATCATTTCCAAAGCCCACAAGTCAGTGGCAAC-CTTCAAAAG
64 TCCAAAGCCCACAAGTTAGTGGCATCATTTCCAAAGCCCACAAGTCAGTGGCAACACTTCAAAAG
*
1336850 CCCACAAGTTAGTGGC-
129 CCCACAAGTCAGTGGCA
* * *
1336866 ACTCTTTTCCAAAGCCCACAAGTCAGTGGTATCTTCTCAAAAGCCCATAAGTTAGTGGCAACC-T
1 AC-CTTTTCCAAAGCCCACAAGTCAGTGGCATCTT-TCAAAAGCCCACAAGTCAGTGGCAACCTT
* *
1336930 TCAAAAGCACACAAGTT
64 TCCAAAGCCCACAAGTT
1336947 GGTGCAACCC
Statistics
Matches: 195, Mismatches: 21, Indels: 16
0.84 0.09 0.07
Matches are distributed among these distances:
142 2 0.01
143 39 0.20
144 100 0.51
145 11 0.06
146 43 0.22
ACGTcount: A:0.31, C:0.31, G:0.17, T:0.21
Consensus pattern (145 bp):
ACCTTTTCCAAAGCCCACAAGTCAGTGGCATCTTTCAAAAGCCCACAAGTCAGTGGCAACCTTTC
CAAAGCCCACAAGTTAGTGGCATCATTTCCAAAGCCCACAAGTCAGTGGCAACACTTCAAAAGCC
CACAAGTCAGTGGCA
Found at i:1337061 original size:42 final size:42
Alignment explanation
Indices: 1336998--1337079 Score: 119
Period size: 42 Copynumber: 2.0 Consensus size: 42
1336988 TCTTCTAAGT
* *
1336998 CCAATATCGCTGGCCTCGAATCAGCATATTGGCACCTTTAAA
1 CCAATATCACTGGCCTCGAATCAGCACATTGGCACCTTTAAA
* * *
1337040 CCAATGTCACTGGCCTTGAATCAGCACATTGGCATCTTTA
1 CCAATATCACTGGCCTCGAATCAGCACATTGGCACCTTTA
1337080 TCTTTAAGTC
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 35 1.00
ACGTcount: A:0.27, C:0.28, G:0.17, T:0.28
Consensus pattern (42 bp):
CCAATATCACTGGCCTCGAATCAGCACATTGGCACCTTTAAA
Found at i:1337165 original size:52 final size:49
Alignment explanation
Indices: 1337040--1337175 Score: 155
Period size: 49 Copynumber: 2.7 Consensus size: 49
1337030 CACCTTTAAA
* * *
1337040 CCAATGTCACTGGCCTTGAATCAGCACATTGGCATCTTTATCTTTAAGT
1 CCAATGTCATTGGCCTTGAATCAGCACATTGGCATCTTTAACTTTAAGC
* * ** *
1337089 CCGATATTGTTGGCCTTGAATCAGCATATTGGCATCTTTAACATTCCTAAGC
1 CCAATGTCATTGGCCTTGAATCAGCACATTGGCATCTTTAAC-TT--TAAGC
**
1337141 CCAATGTCATTGGCCTTGTCTCAGCACATTGGCAT
1 CCAATGTCATTGGCCTTGAATCAGCACATTGGCAT
1337176 TCTTCATTAA
Statistics
Matches: 69, Mismatches: 15, Indels: 3
0.79 0.17 0.03
Matches are distributed among these distances:
49 35 0.51
50 2 0.03
52 32 0.46
ACGTcount: A:0.24, C:0.25, G:0.18, T:0.34
Consensus pattern (49 bp):
CCAATGTCATTGGCCTTGAATCAGCACATTGGCATCTTTAACTTTAAGC
Found at i:1337948 original size:19 final size:19
Alignment explanation
Indices: 1337920--1337969 Score: 91
Period size: 19 Copynumber: 2.6 Consensus size: 19
1337910 AACAAGTAAC
*
1337920 TGTATTGATACATAAGTGT
1 TGTATCGATACATAAGTGT
1337939 TGTATCGATACATAAGTGT
1 TGTATCGATACATAAGTGT
1337958 TGTATCGATACA
1 TGTATCGATACA
1337970 ATGTATCGAC
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 30 1.00
ACGTcount: A:0.32, C:0.10, G:0.20, T:0.38
Consensus pattern (19 bp):
TGTATCGATACATAAGTGT
Found at i:1337986 original size:32 final size:32
Alignment explanation
Indices: 1337939--1338009 Score: 115
Period size: 32 Copynumber: 2.2 Consensus size: 32
1337929 ACATAAGTGT
* *
1337939 TGTATCGATACATAAGTGTTGTATCGATACAA
1 TGTATCGACACATAAGTATTGTATCGATACAA
*
1337971 TGTATCGACATATAAGTATTGTATCGATACAA
1 TGTATCGACACATAAGTATTGTATCGATACAA
1338003 TGTATCG
1 TGTATCG
1338010 CTACGAAGCT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
32 36 1.00
ACGTcount: A:0.34, C:0.13, G:0.18, T:0.35
Consensus pattern (32 bp):
TGTATCGACACATAAGTATTGTATCGATACAA
Found at i:1338072 original size:13 final size:13
Alignment explanation
Indices: 1338054--1338078 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1338044 AATACTCAAA
1338054 TGTATCGATACAT
1 TGTATCGATACAT
1338067 TGTATCGATACA
1 TGTATCGATACA
1338079 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1338255 original size:21 final size:21
Alignment explanation
Indices: 1338229--1338278 Score: 91
Period size: 21 Copynumber: 2.4 Consensus size: 21
1338219 ATCAGGATTA
1338229 ATGTCAAATCTCAATTGCCAC
1 ATGTCAAATCTCAATTGCCAC
1338250 ATGTCAAATCTCAATTGCCAC
1 ATGTCAAATCTCAATTGCCAC
*
1338271 ATGCCAAA
1 ATGTCAAA
1338279 ACACATTTTG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.36, C:0.28, G:0.10, T:0.26
Consensus pattern (21 bp):
ATGTCAAATCTCAATTGCCAC
Found at i:1341850 original size:318 final size:316
Alignment explanation
Indices: 1341265--1349205 Score: 8975
Period size: 318 Copynumber: 25.0 Consensus size: 316
1341255 TGTTACGACA
1341265 CGTATGTTAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTCCATGATTAGGCAAC
1 CGTATGTTAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTCCATGATTAGGCAAC
* *** *
1341330 TAAAACGTGTTCTCTTTATTTGGATACACGATATTAATGCTTTGATTTCATAA-AAAAGTTTTTT
66 CAAAACACATTCTCCTTATTTGGATACAC-ATATTAATGCTTTGATTTCATAAGAAAAGTTTTTT
* * * * * * * *
1341394 TCTCAATCGTTTTCCTCAGAATAAAAGTTTATACTTTAAATGAGACAGACATGGATTTACGAAAA
130 TCTCCACCGTTTTCCTTAGAATCAAAGTTTATA-ATTAAATGAGACAAACATGGATCTATGAAAA
* * * *
1341459 AATCTCCATTCTTTCAATAATTGGGCTCCATAAACACGTTATCTTCATTGGGATGCACAATATTG
194 AATCTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCTTTGGGATGCACAGTATTG
*
1341524 ACGCATTGGTTTTGCAAGAAAAGCTTTTCTTGCCATGATTTTCCTTATATTTTGAGTT
259 ACGCATTGGTTATGCAAGAAAAGCTTTTCTTGCCATGATTTTCCTTATATTTTGAGTT
* * *
1341582 CGTATGTTAAAAGAAACAAATATGGATTCTCATAATAATCTTCATTCTTTCCATGATTAGGCAAC
1 CGTATGTTAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTCCATGATTAGGCAAC
* * **
1341647 TAAAACGCATTCTCCTTATTTGGATACACACTATTAATGCTTTGATTTCGCAAGAAAAGTTTTTT
66 CAAAACACATTCTCCTTATTTGGATACACA-TATTAATGCTTTGATTTCATAAGAAAAGTTTTTT
* * * *
1341712 TCTCAATCGTTTTCCTCAGAATAAAAGTTTATAATTCAAATGAGACAAACATGGATCTATGAAAA
130 TCTCCACCGTTTTCCTTAGAATCAAAGTTTATAATT-AAATGAGACAAACATGGATCTATGAAAA
* ** * * * * **
1341777 AATCACCATTCTTTCAATGATTAAGCAGCATAAACATGTTATCTTCATTGGGATACACAAAATTG
194 AATCTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCTTTGGGATGCACAGTATTG
* *
1341842 ATGCATTGGTTTTGCAAGAAAAGCTTTTCTTGCCATGATTTTCCTTATATTTTGAGTT
259 ACGCATTGGTTATGCAAGAAAAGCTTTTCTTGCCATGATTTTCCTTATATTTTGAGTT
* * * * *
1341900 CATATATTAAATGAAACAAACATGAATTCTTATAAAAATCTTCATTCATTT-CATGATCAGGCAA
1 CGTATGTTAAATGAAACAAACATGGATTCTTATAATAATCTTCATTC-TTTCCATGATTAGGCAA
* * *
1341964 CCAAAACACATTGTCCTT-TTTGGTATACACGACATTAATGCCTTGATTTCATAA-AAAATGTTT
65 CCAAAACACATTCTCCTTATTTGG-ATACAC-ATATTAATGCTTTGATTTCATAAGAAAA-GTTT
* * * * * * * * *
1342027 TTTTCTCCATCATTTT-CTTAAAAGCAAAGTTTATATCTTAAAGGAGACAAACATGGATCGACGC
127 TTTTCTCCACCGTTTTCCTTAGAATCAAAGTTTATA-ATTAAATGAGACAAACATGGATCTATGA
* * * * * * *
1342091 AATAATCTCCATTATTTTAATGATTGGGCACCATAAACACATTATTTTCATTGGGATGCACAATA
191 AAAAATCTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCTTTGGGATGCACAGTA
** *
1342156 TTGACGCATTGGTTATGCAAGAAAAGCTTTTCAAGCCATGATTTTCCATATATTTTGAGTT
256 TTGACGCATTGGTTATGCAAGAAAAGCTTTTCTTGCCATGATTTTCCTTATATTTTGAGTT
* * * * *
1342217 CGTATGTTAAATGAAACAAACGTGTATTCTTATAATAATCTTCCTTCTTTTCATGATT-GGCCAT
1 CGTATGTTAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTCCATGATTAGG-CAA
* * * *
1342281 CTAAAACACATTCT-CTTTTTTGGGATACATGATATTAATGCATTGATTTCATAAGAAAAGTTTT
65 CCAAAACACATTCTCCTTATTT-GGATACA-CATATTAATGCTTTGATTTCATAAGAAAAGTTTT
* * * * *
1342345 TTTCTCCACCGCTTTCCTTGGTATCAAAGTTTA-AACCTTAAATGAGACAAACATGGATTTATGC
128 TTTCTCCACCGTTTTCCTTAGAATCAAAGTTTATAA--TTAAATGAGACAAACATGGATCTATGA
* * * * *
1342409 AAAAATCTCCATTCTTTCAACGATTGGGCACCATAAACACATTATC-TCATTGGGATACACAATA
191 AAAAATCTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCTTTGGGATGCACAGTA
* ** *
1342473 TTGTCGCATTGGTTATGCAAGAAAAGCTTTTCTTGCCCCGATTTTCCATATATTTTGAGTT
256 TTGACGCATTGGTTATGCAAGAAAAGCTTTTCTTGCCATGATTTTCCTTATATTTTGAGTT
* * * * * * * *** * *
1342534 CATACGTTAAATGATA-TAACTATGAATTCCTATAATAATCTTCAATCTTTTTTTGATTAGGTAG
1 CGTATGTTAAATGAAACAAAC-ATGGATTCTTATAATAATCTTCATTCTTTCCATGATTAGGCAA
* * * * * **
1342598 CTAAAACACATTCTCCTTCTTGGGATAAACGATATTAATGCTTTAATTTTGTAAGAAAAGTTTTT
65 CCAAAACACATTCTCCTTATTTGGATACAC-ATATTAATGCTTTGATTTCATAAGAAAAGTTTTT
* * * * *
1342663 TTCTCCATCATTTTCCTTAGAATAAAAGTTTATACCTTAAATGAGACAAACATGGATCTATGCAA
129 TTCTCCACCGTTTTCCTTAGAATCAAAGTTTATA-ATTAAATGAGACAAACATGGATCTATGAAA
* * * * * * * * *
1342728 AAACCTCCACTCATTCAAAGATTAGGCAGCATAAACACGTAATCTTCATTGGGATGCACAATATT
193 AAATCTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCTTTGGGATGCACAGTATT
* * * * * *
1342793 GACACATTGGTTATGTAATAAAAACTTTTTTTGCCATGATTTTCCTTATAATTTGAGTT
258 GACGCATTGGTTATGCAAGAAAAGCTTTTCTTGCCATGATTTTCCTTATATTTTGAGTT
* * * *
1342852 CGTATGTTCAATGAAAGAAACATGGATTCTTATAATAATCTTCATTTTTTCCAAGATTAGGCAAC
1 CGTATGTTAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTCCATGATTAGGCAAC
**** * * *
1342917 CAAAATGTGTTCTCCTTATTTGGATAAATGATATTAATGCGTTGATTTCATAAGAAAAGTTTTTT
66 CAAAACACATTCTCCTTATTTGGATACA-CATATTAATGCTTTGATTTCATAAGAAAAGTTTTTT
* * *
1342982 TCTCCACCGTTTTCCTTAGAATCAAAGTTTA-AACTTTAAATAAGACAAACATTGATCTATGCAA
130 TCTCCACCGTTTTCCTTAGAATCAAAGTTTATAA--TTAAATGAGACAAACATGGATCTATGAAA
* * * * * *
1343046 AAATCTACTTTCTTTTAATGATTGGGCACCATAAACACATTATCTTTTTTGGGATGCATAGTATT
193 AAATCTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCTTTGGGATGCACAGTATT
** * * *
1343111 GACGCATAAGTTATGCAAGAAAGGCTTTTCTTGCCACGATTTTCCTTATATTCTGAGTT
258 GACGCATTGGTTATGCAAGAAAAGCTTTTCTTGCCATGATTTTCCTTATATTTTGAGTT
* * * *
1343170 CGTATGTTAAATGAAACAAACATGGATTCTCATAACAATCTTAATTCATTCCATGATTAGGCAAC
1 CGTATGTTAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTCCATGATTAGGCAAC
* * * * * *
1343235 CAAAACGCATTTTTCTTATTTGAATACAAGATATTAATGCTTTGATTTCATAAGCAAAGTTTTTT
66 CAAAACACATTCTCCTTATTTGGATAC-ACATATTAATGCTTTGATTTCATAAGAAAAGTTTTTT
* * * * **
1343300 TC-CTACAGTTTTCCTTAGAATAAAAGTTTATACCTTAAATGAGACAAACATGGATCTACAAAAA
130 TCTCCACCGTTTTCCTTAGAATCAAAGTTTATA-ATTAAATGAGACAAACATGGATCTATGAAAA
* **
1343364 AATCTCCATTCTTTCAATGATTGGGCACCATAAAAACACATTATCTTCTTTGGGATGCATGGTAT
194 AATCTCCATTCTTTCAATGATTGGGCACCAT--AAACACGTTATCTTCTTTGGGATGCACAGTAT
* * * * *
1343429 TGACGCATAGGTTATGCAAGAAAAG-TTATTCTTGCCACGATTTTCCATATATTCTAAGTT
257 TGACGCATTGGTTATGCAAGAAAAGCTT-TTCTTGCCATGATTTTCCTTATATTTTGAGTT
* * * * *
1343489 CATATGTTAAATGAAACAAACATGGATTCTCATAATAATCTTCATTCTTTCAAAGAATAGGCAAC
1 CGTATGTTAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTCCATGATTAGGCAAC
* * * * ** **
1343554 CAAAACGCGTTCTCCTTATTTGGATACATGATATTAATGCATACATTTCATTGGAAAAG-TTTTT
66 CAAAACACATTCTCCTTATTTGGATACA-CATATTAATGCTTTGATTTCATAAGAAAAGTTTTTT
* * * * *
1343618 TCTCCACCGTTTTCCTTGGAATCAAAGTTTA-AACCTTAAATGAGAGAAACATGAATCT-TTACA
130 TCTCCACCGTTTTCCTTAGAATCAAAGTTTATAA--TTAAATGAGACAAACATGGATCTATGAAA
* * * *
1343681 AAATCTCCATTCTTTCAATGATTGGGCAGCATGAACACATTATCTTCTTTGGGATGCATAGTATT
193 AAATCTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCTTTGGGATGCACAGTATT
* * * ** * ** *
1343746 AACGCATAGCTTATTTAACAATGGCTTTTCTTGCCATAATTTTCCTTATATTTTGAGTT
258 GACGCATTGGTTATGCAAGAAAAGCTTTTCTTGCCATGATTTTCCTTATATTTTGAGTT
* * *
1343805 CGTATGTTAAAAGAAACAAACATGGATTCTTATAACAATCTTCATTCTTTCCATGATTAAGCAAC
1 CGTATGTTAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTCCATGATTAGGCAAC
** * * * *
1343870 CAAAATGCATTCTTCTTATATGGATACAAGATATTAATACTTTGATTTCATAAGAAAAGTTTTTT
66 CAAAACACATTCTCCTTATTTGGATAC-ACATATTAATGCTTTGATTTCATAAGAAAAGTTTTTT
* * * **
1343935 TC-CCTACAC-TTTTCCTTAGAATAAAAGTTTATACCTTAAATGAGACCAACATGGATCTACAAA
130 TCTCC-AC-CGTTTTCCTTAGAATCAAAGTTTATA-ATTAAATGAGACAAACATGGATCTATGAA
* * *
1343998 AAAAACTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCTTTGGGATGCACAATTT
192 AAAATCTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCTTTGGGATGCACAGTAT
* * * * * *
1344063 TAATGCATAGGTTAAGCAAGAAAGGCTTTTCTTGCCACGATTTTCCTTATATTTTGAGTT
257 TGACGCATTGGTTATGCAAGAAAAGCTTTTCTTGCCATGATTTTCCTTATATTTTGAGTT
* * * * * **
1344123 CGTATGTTAAATGAAACAAACATGGATTCTTATAATAATCTACCTTATTTTCATGATTAGCCATG
1 CGTATGTTAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTCCATGATTAGGCAAC
* * ** *
1344188 CGAAACACATTCT-CTTTTTTGGGATACACGATATTAGCGCATTGATTTCATAAGAAAAGTTTTT
66 CAAAACACATTCTCCTTATTT-GGATACAC-ATATTAATGCTTTGATTTCATAAGAAAAGTTTTT
* * * * * *
1344252 TTCTCCACTGTTTTCCTTTGAACCAAAGTTTA-AACCTTAAATGAGATAAACACGGATCTATGCA
129 TTCTCCACCGTTTTCCTTAGAATCAAAGTTTATAA--TTAAATGAGACAAACATGGATCTATGAA
* * *
1344316 AAAATCTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTACTTTGGGACGCATAGTAT
192 AAAATCTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCTTTGGGATGCACAGTAT
* * ** *
1344381 TGACGCATAGGTTATGCAAGAAACGCTTTTCTTGCCGCGATTTTCCTTATATTTTGGGTT
257 TGACGCATTGGTTATGCAAGAAAAGCTTTTCTTGCCATGATTTTCCTTATATTTTGAGTT
* ** * *
1344441 CTTATGTTAAATGAAACAAACATAAATTCTTATAATAATCTTCATTCTTTCCTTAATTAGGCAAC
1 CGTATGTTAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTCCATGATTAGGCAAC
* * ** *
1344506 CAAAACATATTCTCCATT-TTGGGATACACGATATTAATGCTTTGATTTTGTAAGCAAAGTTTTT
66 CAAAACACATTCTCC-TTATTTGGATACAC-ATATTAATGCTTTGATTTCATAAGAAAAGTTTTT
* * *
1344570 TTCT-CATCCATTTTCCTTAGAATCAAAGTTTA-AATTTTAAATGAGACAAACATGGATCTACGC
129 TTCTCCA-CCGTTTTCCTTAGAATCAAAGTTTATAA--TTAAATGAGACAAACATGGATCTATGA
* * * * * * *
1344633 AAAAATCTTCGTTGTTTCAATGTTTGGGCACCATAAACATGTTATCTTTTTTGGGATGCATAGTA
191 AAAAATCTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCTTTGGGATGCACAGTA
* * * *
1344698 TTTACGCATAGGTTATGCAAGAAAGGCTTTTCTTGCCACGATTTTCCTTATATTTTGAGTT
256 TTGACGCATTGGTTATGCAAGAAAAGCTTTTCTTGCCATGATTTTCCTTATATTTTGAGTT
* *
1344759 CGTATGTTAAATGAAACAAACATGGATTCTTATAACAATCTTCATTCTTTCCATGATTAAGCAAC
1 CGTATGTTAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTCCATGATTAGGCAAC
* * * * * *
1344824 CAAAACGCATTCTTCTTATTTGAATGCAAGATATTAATGCTTTGATTTCATAAGCAAAG-TTTTT
66 CAAAACACATTCTCCTTATTTGGATAC-ACATATTAATGCTTTGATTTCATAAGAAAAGTTTTTT
* * * * * * *
1344888 TCCCCTACCGTTTTCCTTATAATAAAAGTTTATACCTTAAATCAGACAAATATGGATCTACGAAA
130 TCTCC-ACCGTTTTCCTTAGAATCAAAGTTTATA-ATTAAATGAGACAAACATGGATCTATGAAA
* **
1344953 AAATCTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTATTTGGGATGCATGGTATT
193 AAATCTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCTTTGGGATGCACAGTATT
* * * *
1345018 GACGCATAGGTTATGCAAGAAAAG-TTGTTCTTGCCACGATTTTCCATATATTCTGAGTT
258 GACGCATTGGTTATGCAAGAAAAGCTT-TTCTTGCCATGATTTTCCTTATATTTTGAGTT
* * * *
1345077 CATATGTTAAATGAAAAAAACATGGATTCTCATAATAATCTTCATTCTTTCCATGAATAGGCAAC
1 CGTATGTTAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTCCATGATTAGGCAAC
* * * * * * * * *
1345142 CAAAGCGCGTTCTCCTTATTTGGATGCATGATATTAAGGCATTCATTTCATAGGAAAAG-TTTTT
66 CAAAACACATTCTCCTTATTTGGATACA-CATATTAATGCTTTGATTTCATAAGAAAAGTTTTTT
* * * * * *
1345206 TCTCCACCATTTTCCTTGGAATCAAAGTTTA-AACCTTATATGAGAGAAACATGGATCTACG-CA
130 TCTCCACCGTTTTCCTTAGAATCAAAGTTTATAA--TTAAATGAGACAAACATGGATCTATGAAA
* * * * * *
1345269 AAATCTCCATTCTTTCAATGACTGGGCAGCATGAACACATTATCTTTTTTGGGATGCATAGTATT
193 AAATCTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCTTTGGGATGCACAGTATT
* * * * ** *
1345334 GACGCATAGCTTATGTAACAATGGCTTTTCTTGCCACGATTTTCCTTATATTTTGAGTT
258 GACGCATTGGTTATGCAAGAAAAGCTTTTCTTGCCATGATTTTCCTTATATTTTGAGTT
* *
1345393 CGTATGTTAAAAGAAACAAACATGGATTCTTATAACAATCTTCATTCTTTCCATGATTAGGCAAC
1 CGTATGTTAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTCCATGATTAGGCAAC
* * * * *
1345458 CAAAACGCATTCTTCATATATGGATACAAGATATTAA-GACTTTGATTTCATAAGAAAAGTTTTT
66 CAAAACACATTCTCCTTATTTGGATAC-ACATATTAATG-CTTTGATTTCATAAGAAAAGTTTTT
* * **
1345522 TTC-CCTAGCC-TTTTCCTTAGAATAAAAGTTTATACCTTAAATGAGACAAACATGGATCTACAA
129 TTCTCC-A-CCGTTTTCCTTAGAATCAAAGTTTATA-ATTAAATGAGACAAACATGGATCTATGA
* *
1345585 AAAAATATCCATTCTTTCAATGATTGGGCACCATAAACACATTATCTTCTTTGGGATGCACAGTA
191 AAAAATCTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCTTTGGGATGCACAGTA
* * *
1345650 TTAACGCATAGGTTATGCAAGAAAGGCTTTTCTTGCCATGATTTTCCTTATATTTTGAGTT
256 TTGACGCATTGGTTATGCAAGAAAAGCTTTTCTTGCCATGATTTTCCTTATATTTTGAGTT
* * * * * *
1345711 CATATATTAAATGAAACAAACATGGATTCTTATAATAATCTTCCTTCTTTTCATGATTAGCCATC
1 CGTATGTTAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTCCATGATTAGGCAAC
* * ** *
1345776 CAAAACACATTCTTCTT-TGTGGGATACACGATATTAGCGCATTGATTTCATAAGAAAAGTTTTT
66 CAAAACACATTCTCCTTAT-TTGGATACAC-ATATTAATGCTTTGATTTCATAAGAAAAGTTTTT
* * * * *
1345840 TTCTCCACTGTTTTCCTTTGAACCAAAGTTTA-AACCTTAAATGAGACAAACACGGATCTATGCA
129 TTCTCCACCGTTTTCCTTAGAATCAAAGTTTATAA--TTAAATGAGACAAACATGGATCTATGAA
* *
1345904 AAAATCTCCATTCTTTTAATGATTGGGCACCATAAACACGTTATCTTCTTTGGGATGCATAGTAT
192 AAAATCTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCTTTGGGATGCACAGTAT
* * * *
1345969 TGACGCATAGGTTATGCAAGAAAGGCCTTTCTTG-C-TGCAATTTTCCTTATATTTTGGGTT
257 TGACGCATTGGTTATGCAAGAAAAGCTTTTCTTGCCATG--ATTTTCCTTATATTTTGAGTT
* *
1346029 CGTATGTTAAATGAAACAAACATAGATTCTTATAATAATCTTCATTCTTTCCTTGATTAGGCAAC
1 CGTATGTTAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTCCATGATTAGGCAAC
* *
1346094 CAAAACACATTCTCCGTT-TTGGGATACACGATATTAATGCTTTGATTTCATAAGCAAAGTTTTT
66 CAAAACACATTCTCC-TTATTTGGATACAC-ATATTAATGCTTTGATTTCATAAGAAAAGTTTTT
*
1346158 TTCT-CATCCATTTTCCTTAGAATCAAAGTTTA-AACTTTAAATGAGACAAACATGGATCTATTG
129 TTCTCCA-CCGTTTTCCTTAGAATCAAAGTTTATAA--TTAAATGAGACAAACATGGATCTA-TG
* * * * * *
1346221 -AAAAATCTTCATTCTTTCAATGATTAGACACCATAAACATGTTATCTTTTTTGGGATGCATAGT
190 AAAAAATCTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCTTTGGGATGCACAGT
* * * *
1346285 ATTGATGCATAGGTTATGCAAGAAAGGCTTTTCTTGCCACT-ATTTTCCTTATATTTTGACTAT
255 ATTGACGCATTGGTTATGCAAGAAAAGCTTTTCTTGCCA-TGATTTTCCTTATATTTTGAGT-T
* * * * *
1346348 -GTATGTTAAATGAAACAAACGTGGATTCTTAAAACAATCTTCTTTCTTTCCATGATTAGACAAC
1 CGTATGTTAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTCCATGATTAGGCAAC
* * * * *
1346412 CAAAACACATTATCCTT-TTTGGTGTACATGATATTAAGGCTTTGATTTCATAAGAAAAGATTTT
66 CAAAACACATTCTCCTTATTTGG-ATACA-CATATTAATGCTTTGATTTCATAAGAAAAGTTTTT
** * * * *
1346476 TTCTCCACCGTTTTTTTTTTTTGAAGCAAAGTTTAGACCTTAAATGAGACAAA-AGTGGATCTAT
129 TTCTCCACCG---TTTTCCTTAGAATCAAAGTTTATA-ATTAAATGAGACAAACA-TGGATCTAT
* * * * * *
1346540 GCAAATAATCTCCATTATTTTAATGATTGGGCACCATAAACACATTATTTTCATTGGGATGCACA
189 G-AAAAAATCTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCTTTGGGATGCACA
** * * *
1346605 ACACTGACGCATTGGTTATGCAAGAAAAGCTTTTCTTGTCATGATTTTCCATATATTTTGAGTT
253 GTATTGACGCATTGGTTATGCAAGAAAAGCTTTTCTTGCCATGATTTTCCTTATATTTTGAGTT
* ** * *
1346669 TGTATGTTAAATGAAACAAACAAT-GATTCTTATAATAATCTTCATAATTTTCATGACTAGGCAA
1 CGTATGTTAAATGAAACAAAC-ATGGATTCTTATAATAATCTTCATTCTTTCCATGATTAGGCAA
* ** *
1346733 CCAAAACACATTCTCCTT-TTTGGGATACATGATATTAGCGCATTGATTTCATAAGAAAAGTTTT
65 CCAAAACACATTCTCCTTATTT-GGATACA-CATATTAATGCTTTGATTTCATAAGAAAAGTTTT
* * * ** * *
1346797 TTTCTCCACTGTTTTCCTTTGAACCAAAGTTTA-AACCTTAAATGAGACAAACACAGATCCATGC
128 TTTCTCCACCGTTTTCCTTAGAATCAAAGTTTATAA--TTAAATGAGACAAACATGGATCTATGA
*
1346861 AAAAATCTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCTTTGGGATGCATAGTA
191 AAAAATCTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCTTTGGGATGCACAGTA
* * *** * *
1346926 TTGACGCATAGGTTATGCAAGAAAGGCTTTTCTTGCCGCAATTTTCCTTCTATTTTGGGTT
256 TTGACGCATTGGTTATGCAAGAAAAGCTTTTCTTGCCATGATTTTCCTTATATTTTGAGTT
* * * * *
1346987 CCTATGTTAAATGAAACAAACATAGATTCTTATAATAATCATCGTTCTTTCCTTGATTAGGCAAC
1 CGTATGTTAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTCCATGATTAGGCAAC
* * *
1347052 CAAAACACATTCTCCATT-TTGGGATACACGATATTAATGCTTTGGTTTCATAAGCAAAGTTTTT
66 CAAAACACATTCTCC-TTATTTGGATACAC-ATATTAATGCTTTGATTTCATAAGAAAAGTTTTT
* *
1347116 TTCT-CACCCATTTTCCTTAGAATCAAAGTTTA-AACTTTAAATGAGACAAACATGGATCTATGC
129 TTCTCCA-CCGTTTTCCTTAGAATCAAAGTTTATAA--TTAAATGAGACAAACATGGATCTATGA
* * * * *
1347179 AAAAATCTTCGTTCTTTCAATGATTGGGCACCATAAACATGTTATCTTTTTTGGGATGCATAGTA
191 AAAAATCTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCTTTGGGATGCACAGTA
* * *
1347244 TTGATGCATAT-GTTATGCAAGAAAGGCTTTTCTTGCCACT-ATTTTCCTTATATTTTGAGTA
256 TTGACGCAT-TGGTTATGCAAGAAAAGCTTTTCTTGCCA-TGATTTTCCTTATATTTTGAGTT
* * * *
1347305 CGTATGTTAAATGAAACAAACATGGATTCTTAAAACAATCTTCATTCTTTCCATGACTAGACAAC
1 CGTATGTTAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTCCATGATTAGGCAAC
* * * *
1347370 CAAAACACATTATCCTT-TTTGGTGTACATGATATTAAGGCTTTGATTTCATAAGAAAAGTTTTT
66 CAAAACACATTCTCCTTATTTGG-ATACA-CATATTAATGCTTTGATTTCATAAGAAAAGTTTTT
* * * * *
1347434 TTCTCCACCGTTTTTCTTTGAAGCAAAGTTTATATCTTAAATGAGACAAACGTGGATCTATGCAA
129 TTCTCCACCGTTTTCCTTAGAATCAAAGTTTATA-ATTAAATGAGACAAACATGGATCTATG-AA
* * * * * * ** *
1347499 ATAATCTCCATTCTTTTAATGATTGGGCACCATAAACACATGATTTTCATTGGGATGCACAACAC
192 AAAATCTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCTTTGGGATGCACAGTAT
* * *
1347564 TAACGCATTGGTTATGCAAGAAAAGCTTTTCTTGTCATGATTTTCCATATATTTTGAGTT
257 TGACGCATTGGTTATGCAAGAAAAGCTTTTCTTGCCATGATTTTCCTTATATTTTGAGTT
** * *
1347624 CGTATGTT--A--AAAC--A-AT-GATTCTTATAATAATCTTCATAATTTTCATGACTAGGCAAC
1 CGTATGTTAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTCCATGATTAGGCAAC
*
1347681 CAAAACACATTCTCCTT-TTTGGGATACACGATATTAATACTTTGATTTCATAAGAAAAG-TTTT
66 CAAAACACATTCTCCTTATTT-GGATACAC-ATATTAATGCTTTGATTTCATAAGAAAAGTTTTT
* * * ** * * * * *
1347744 TTCTCTAACATTTTGTTTAGAATAAAAATTCATACTTTAAATGAGACAAACATGGATCTACGAAA
129 TTCTCCACCGTTTTCCTTAGAATCAAAGTTTATA-ATTAAATGAGACAAACATGGATCTATG-AA
* * * * **
1347809 AAAATATCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTGAGATACACAAAAT
192 AAAATCTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCTTTGGGATGCACAGTAT
* * *
1347874 TGAGGCATTGGTTTTGCAAGAAAAGCTTTTCTTGCCATGATTTTTCTTATATTTTGAGTT
257 TGACGCATTGGTTATGCAAGAAAAGCTTTTCTTGCCATGATTTTCCTTATATTTTGAGTT
* * * *
1347934 CGTAGGTTAAATGGAACAAACAAGTATTCTTATAATAATCTTCATT-TTTCCATGATTAGGCAAC
1 CGTATGTTAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTCCATGATTAGGCAAC
* * * ** * *
1347998 C-AAACTGCATTCTCCTAATTTGGGTACATGGTATTAACGCTTTGATTACATAAG-AAAGTTTTT
66 CAAAAC-ACATTCTCCTTATTTGGATACA-CATATTAATGCTTTGATTTCATAAGAAAAGTTTTT
* * * * * **
1348061 TTCTCAATCGTTTT-CTTCAGAATAAAAGTTTAGACTTTAAATGAGACAAACATGGATCTACAAA
129 TTCTCCACCGTTTTCCTT-AGAATCAAAGTTTATA-ATTAAATGAGACAAACATGGATCTA-TGA
* * * * *
1348125 AAAAATCTCCATTCTTTCAATGATTGGGCACCATAAACACATTCTCTTCATTAGGATGCACAATA
191 AAAAATCTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCTTTGGGATGCACAGTA
* * * * *
1348190 TTGACACATTGGTCATGCAAGAAAAGCTTTTCTTGCCACGATTTTTCTTATATTTGGAGTT
256 TTGACGCATTGGTTATGCAAGAAAAGCTTTTCTTGCCATGATTTTCCTTATATTTTGAGTT
* * * * *
1348251 CGTATGTTAAAAGAAATAAACATAGATTCTTATAAAAATCTTCATTCTTTCCTTGATTAGGCAAC
1 CGTATGTTAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTCCATGATTAGGCAAC
* * * *
1348316 CAAAACACATTCTCCATT-TTAT-GATACATGATATTAATGCTTTGATTTTATAAGCAATGTTTT
66 CAAAACACATTCTCC-TTATT-TGGATACA-CATATTAATGCTTTGATTTCATAAGAAAAGTTTT
* * * *
1348379 TTTCTCCACCATTTTCCTTAGAATCAAAGTTTA-AACGTTAAATGAGACAAAAATGGATATATGC
128 TTTCTCCACCGTTTTCCTTAGAATCAAAGTTTATAA--TTAAATGAGACAAACATGGATCTATGA
* * *
1348443 AAAAATCTCCATTTTTTTAGTGATTGGGCACCATAAACACGTTATCTTCTTTGGGATGCACAGTA
191 AAAAATCTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCTTTGGGATGCACAGTA
* * *
1348508 TTGACGCATAT-GTTATGCAAGAAAGGCTTTTCTTGCCACGATTTTCCTTAAATTTTGAGTT
256 TTGACGCAT-TGGTTATGCAAGAAAAGCTTTTCTTGCCATGATTTTCCTTATATTTTGAGTT
* * * * *
1348569 CTTATTTTAAATGAAACAAACATAGATTCTTATAGTAATCTTCATTCTTTCCATGATTTGGCAAC
1 CGTATGTTAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTCCATGATTAGGCAAC
*
1348634 CAAAACACGTTCTCCTTATTTGGATACACGATATTAATGCTTTGATTTCATAAGAAAAGTTTTTT
66 CAAAACACATTCTCCTTATTTGGATACAC-ATATTAATGCTTTGATTTCATAAGAAAAGTTTTTT
** * * * *
1348699 TCTATACCGTTTTCCTTAGAATAAAAGTTTATACCTTAAATGAGACAAACAAGGATCTACGAAAA
130 TCTCCACCGTTTTCCTTAGAATCAAAGTTTATA-ATTAAATGAGACAAACATGGATCTATGAAAA
* * * * ** **
1348764 AATCTCCATTCTTCCAATGATTGAGCACCATAAACACGCTATCTTCTTCGGGATATACAAAATTG
194 AATCTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCTTTGGGATGCACAGTATTG
* * *
1348829 ACGCATTGGTTTTGCAAGAAAAGCTTTTCTTGCCATGATTTTCCTCATTTTTTGAGTT
259 ACGCATTGGTTATGCAAGAAAAGCTTTTCTTGCCATGATTTTCCTTATATTTTGAGTT
* * * *
1348887 CATATGTTAAGTGAAACAAACATGGATTCTTATAACAATATTCATTCTTTCCATGATTAGGCAAC
1 CGTATGTTAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTCCATGATTAGGCAAC
* * *
1348952 CAAAACGCGTTCTCCTTATTTGGATACACGATATTAATTCTTTGATTTCATAAGAAAAGTTTTTT
66 CAAAACACATTCTCCTTATTTGGATACAC-ATATTAATGCTTTGATTTCATAAGAAAAGTTTTTT
* * * * * * *
1349017 TCTCAATCATTTTCCTCAGAATAAAAGTTTATACTTTAAATGAGACAAACATGGATCTACGAAAA
130 TCTCCACCGTTTTCCTTAGAATCAAAGTTTATA-ATTAAATGAGACAAACATGGATCTATGAAAA
* * * * * * * **
1349082 AATATCCATTCTTTCAAGGATTGAGCACCATCAACACATTATCTTCATTGGGATACACAAAATTG
194 AATCTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCTTTGGGATGCACAGTATTG
* * *
1349147 ACGCATTGGTTTTGCAAGAAAAGCTTTTCTTGCCAAGATTTTCCTTATAATTTGAGTT
259 ACGCATTGGTTATGCAAGAAAAGCTTTTCTTGCCATGATTTTCCTTATATTTTGAGTT
1349205 C
1 C
1349206 TTATTATTAG
Statistics
Matches: 6538, Mismatches: 933, Indels: 305
0.84 0.12 0.04
Matches are distributed among these distances:
310 170 0.03
311 85 0.01
312 5 0.00
313 1 0.00
314 3 0.00
315 5 0.00
316 423 0.06
317 1166 0.18
318 3925 0.60
319 480 0.07
320 9 0.00
321 43 0.01
322 220 0.03
323 3 0.00
ACGTcount: A:0.33, C:0.17, G:0.14, T:0.37
Consensus pattern (316 bp):
CGTATGTTAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTCCATGATTAGGCAAC
CAAAACACATTCTCCTTATTTGGATACACATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTT
CTCCACCGTTTTCCTTAGAATCAAAGTTTATAATTAAATGAGACAAACATGGATCTATGAAAAAA
TCTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCTTTGGGATGCACAGTATTGAC
GCATTGGTTATGCAAGAAAAGCTTTTCTTGCCATGATTTTCCTTATATTTTGAGTT
Found at i:1349189 original size:159 final size:157
Alignment explanation
Indices: 1341403--1349193 Score: 2040
Period size: 159 Copynumber: 49.1 Consensus size: 157
1341393 TTCTCAATCG
* * *
1341403 TTTTCCTCAGAATAAAAGTTTATACTTTAAATGAGACAGACATGGATTTACGAAAAAATCTCCAT
1 TTTTCCTTAGAATAAAAGTTTATACTTTAAATGAGACAAACATGGATCTA--AAAAAATCTCCAT
* * * *
1341468 TCTTTCAATAATTGGGCTCCATAAACACGTTATCTTCATTGGGATGCACAATATTGACGCATTGG
64 TCTTTCAATGATTGAGCACCATAAACACGTTATCTTCATTGGGATACACAATATTGACGCATTGG
*
1341533 TTTTGCAAGAAAAGCTTTTCTTGCCATGA
129 TTTTGCAAGAAAAGCTTTTCTTGCCAAGA
* * *** ** * * * * * *
1341562 TTTTCCTTATATTTTGAGTTCGTA-TGTTAAAAGAAACAAATATGGATTCTCATAATAATCTTCA
1 TTTTCCTTAGAATAAAAGTTTATACT-TTAAATGAGACAAACATGGA-TCT-AAAAAAATCTCCA
* * * * * * *
1341626 TTCTTTCCATGATT-AGGCAAC-TAAA-ACGCATTCTCCTT-ATTTGGATACACACTATTAATGC
63 TTCTTTCAATGATTGA-GCACCATAAACACG--TTAT-CTTCATTGGGATACACAATATTGACGC
* * * *
1341687 TTTGATTTCGCAAGAAAAG-TTTT-TTTCTCAATCG-
124 ATTGGTTTTGCAAGAAAAGCTTTTCTTGC-CAA--GA
* * * *
1341721 TTTTCCTCAGAATAAAAGTTTATAATTCAAATGAGACAAACATGGATCTATGAAAAAATCACCAT
1 TTTTCCTTAGAATAAAAGTTTATACTTTAAATGAGACAAACATGGATCTA--AAAAAATCTCCAT
* * * * *
1341786 TCTTTCAATGATTAAGCAGCATAAACATGTTATCTTCATTGGGATACACAAAATTGATGCATTGG
64 TCTTTCAATGATTGAGCACCATAAACACGTTATCTTCATTGGGATACACAATATTGACGCATTGG
*
1341851 TTTTGCAAGAAAAGCTTTTCTTGCCATGA
129 TTTTGCAAGAAAAGCTTTTCTTGCCAAGA
* * *** * * * * *
1341880 TTTTCCTTATATTTTGAGTTCATA-TATTAAATGAAACAAACATGAATTCTTATAAAAATCTTCA
1 TTTTCCTTAGAATAAAAGTTTATACT-TTAAATGAGACAAACATGGA-TC-TAAAAAAATCTCCA
* * * * * * * * *
1341944 TTCATTTC-ATGA-TCAGGCAACCA-AAACACATTGTCCTT-TTTGGTATACACGACATTAATGC
63 TTC-TTTCAATGATTGA-GC-ACCATAAACACGTTAT-CTTCATTGGGATACACAATATTGACGC
* * * * * **
1342005 CTT-GATTT-CATAAAAAATG-TTTTTTTCTCCATCA
124 ATTGGTTTTGCA-AGAAAA-GCTTTTCTT-GCCAAGA
* ** * * * *
1342039 TTTT-CTTAAAAGCAAAGTTTATA-TCTTAAAGGAGACAAACATGGATCGACGCAATAATCTCCA
1 TTTTCCTTAGAATAAAAGTTTATACT-TTAAATGAGACAAACATGGATCTA--AAAAAATCTCCA
* * * * * *
1342102 TTATTTTAATGATTGGGCACCATAAACACATTATTTTCATTGGGATGCACAATATTGACGCATTG
63 TTCTTTCAATGATTGAGCACCATAAACACGTTATCTTCATTGGGATACACAATATTGACGCATTG
* ** *
1342167 GTTATGCAAGAAAAGCTTTTCAAGCCATGA
128 GTTTTGCAAGAAAAGCTTTTCTTGCCAAGA
* * * *** ** * * * * *
1342197 TTTTCCATATATTTTGAGTTCGTA-TGTTAAATGAAACAAACGTGTATTCTTATAATAATCTTCC
1 TTTTCCTTAGAATAAAAGTTTATACT-TTAAATGAGACAAACATGGA-TC-TAAAAAAATC-TCC
* * * ** ** * *
1342261 -TTCTTTTC-ATGATTG-GCCATC-TAAAACACATTCTCTTTTTTGGGATACATGATATTAATGC
62 ATTC-TTTCAATGATTGAG-CACCAT-AAACACGTTATCTTCATTGGGATACACAATATTGACGC
* *** * * *
1342322 ATTGATTTCATAAGAAAAG-TTTTTTTCTCCACCG-
124 ATTGGTTTTGCAAGAAAAGCTTTTCTT-GCCA-AGA
* * * * * * * *
1342356 CTTTCCTTGGTATCAAAGTTTAAACCTTAAATGAGACAAACATGGATTTATGCAAAAATCTCCAT
1 TTTTCCTTAGAATAAAAGTTTATACTTTAAATGAGACAAACATGGATCTA--AAAAAATCTCCAT
* * * *
1342421 TCTTTCAACGATTGGGCACCATAAACACATTATC-TCATTGGGATACACAATATTGTCGCATTGG
64 TCTTTCAATGATTGAGCACCATAAACACGTTATCTTCATTGGGATACACAATATTGACGCATTGG
* **
1342485 TTATGCAAGAAAAGCTTTTCTTGCCCCGA
129 TTTTGCAAGAAAAGCTTTTCTTGCCAAGA
* * * *** * * * * * * * *
1342514 TTTTCCATATATTTTGAGTTCATACGTTAAATGATA-TAACTATGAATTCCTATAATAATCTTCA
1 TTTTCCTTAGAATAAAAGTTTATACTTTAAATGAGACAAAC-ATGGA-T-CTAAAAAAATCTCCA
* *** * * * * * * * * *
1342578 ATCTTTTTTTGATT-AGGTAGC-TAAAACACATTCTCCTTC-TTGGGATAAACGATATTAATGCT
63 TTCTTTCAATGATTGA-GCACCAT-AAACACGTTAT-CTTCATTGGGATACACAATATTGACGCA
** * * * **
1342640 TTAATTTTGTAAGAAAAG-TTTTTTTCTCCATCA
125 TTGGTTTTGCAAGAAAAGCTTTTCTT-GCCAAGA
* * * *
1342673 TTTTCCTTAGAATAAAAGTTTATACCTTAAATGAGACAAACATGGATCTATGCAAAAACCTCCAC
1 TTTTCCTTAGAATAAAAGTTTATACTTTAAATGAGACAAACATGGATCTA--AAAAAATCTCCAT
* * * * * *
1342738 TCATTCAAAGATT-AGGCAGCATAAACACGTAATCTTCATTGGGATGCACAATATTGACACATTG
64 TCTTTCAATGATTGA-GCACCATAAACACGTTATCTTCATTGGGATACACAATATTGACGCATTG
* * * * * *
1342802 GTTATGTAATAAAAACTTTTTTTGCCATGA
128 GTTTTGCAAGAAAAGCTTTTCTTGCCAAGA
* *** ** * * * * * *
1342832 TTTTCCTTATAATTTGAGTTCGTA-TGTTCAATGAAAGAAACATGGATTCTTATAATAATCTTCA
1 TTTTCCTTAGAATAAAAGTTTATACT-TTAAATGAGACAAACATGGA-TC-TAAAAAAATCTCCA
* *** * * * ** * *
1342896 TTTTTTCCAA-GATT-AGGCAACCA-AAATGTGTTCTCCTT-ATTTGGATAAATGATATTAATGC
63 TTCTTT-CAATGATTGA-GC-ACCATAAACACGTTAT-CTTCATTGGGATACACAATATTGACGC
* * *** * * *
1342957 GTTGATTTCATAAGAAAAG-TTTTTTTCTCCACCG-
124 ATTGGTTTTGCAAGAAAAGCTTTTCTT-GCCA-AGA
* * * * * * *
1342991 TTTTCCTTAGAATCAAAGTTTAAACTTTAAATAAGACAAACATTGATCTATGCAAAAATCTACTT
1 TTTTCCTTAGAATAAAAGTTTATACTTTAAATGAGACAAACATGGATCTA--AAAAAATCTCCAT
* * * ** * * * **
1343056 TCTTTTAATGATTGGGCACCATAAACACATTATCTTTTTTGGGATGCATAGTATTGACGCATAAG
64 TCTTTCAATGATTGAGCACCATAAACACGTTATCTTCATTGGGATACACAATATTGACGCATTGG
* * *
1343121 TTATGCAAGAAAGGCTTTTCTTGCCACGA
129 TTTTGCAAGAAAAGCTTTTCTTGCCAAGA
* * *** ** * * * **
1343150 TTTTCCTTATATTCTGAGTTCGTA-TGTTAAATGAAACAAACATGGATTCTCATAACAATCTTAA
1 TTTTCCTTAGAATAAAAGTTTATACT-TTAAATGAGACAAACATGGA-TCT-AAAAAAATCTCCA
* * * * * * * * *
1343214 TTCATTCCATGATT-AGGCAACCA-AAACGCATTTTTCTT-ATTTGAATACA-AGATATTAATGC
63 TTCTTTCAATGATTGA-GC-ACCATAAACAC-GTTATCTTCATTGGGATACACA-ATATTGACGC
* * *** * *
1343275 TTTGATTTCATAAGCAAAG-TTTT-TTTCCTACAG-
124 ATTGGTTTTGCAAGAAAAGCTTTTCTTGCC-A-AGA
*
1343308 TTTTCCTTAGAATAAAAGTTTATACCTTAAATGAGACAAACATGGATCTACAAAAAAATCTCCAT
1 TTTTCCTTAGAATAAAAGTTTATACTTTAAATGAGACAAACATGGATCT--AAAAAAATCTCCAT
* * * * *** *
1343373 TCTTTCAATGATTGGGCACCATAAAAACACATTATCTTCTTTGGGATGCATGGTATTGACGCATA
64 TCTTTCAATGATTGAGCACCAT--AAACACGTTATCTTCATTGGGATACACAATATTGACGCATT
* *
1343438 GGTTATGCAAGAAAAG-TTATTCTTGCCACGA
127 GGTTTTGCAAGAAAAGCTT-TTCTTGCCAAGA
* * * ** * * * * *
1343469 TTTTCCATATATTCTAAGTTCATA-TGTTAAATGAAACAAACATGGATTCTCATAATAATCTTCA
1 TTTTCCTTAGAATAAAAGTTTATACT-TTAAATGAGACAAACATGGA-TCT-AAAAAAATCTCCA
* * * * * ** * *
1343533 TTCTTTCAAAGAAT-AGGCAACCA-AAACGCGTTCTCCTT-ATTTGGATACATGATATTAATGCA
63 TTCTTTCAATGATTGA-GC-ACCATAAACACGTTAT-CTTCATTGGGATACACAATATTGACGCA
*** * * *
1343595 -TACATTT-CATTGGAAAAG-TTTT-TTCTCCACCG-
125 TTGGTTTTGCA--AGAAAAGCTTTTCTT-GCCA-AGA
* * * * * * * *
1343627 TTTTCCTTGGAATCAAAGTTTAAACCTTAAATGAGAGAAACATGAATCTTTACAAAATCTCCATT
1 TTTTCCTTAGAATAAAAGTTTATACTTTAAATGAGACAAACATGGATC-TAAAAAAATCTCCATT
* * * * * * * * * * *
1343692 CTTTCAATGATTGGGCAGCATGAACACATTATCTTCTTTGGGATGCATAGTATTAACGCATAGCT
65 CTTTCAATGATTGAGCACCATAAACACGTTATCTTCATTGGGATACACAATATTGACGCATTGGT
* * **
1343757 TATT-TAACAATGGCTTTTCTTGCCATA-A
130 T-TTGCAAGAAAAGCTTTTCTTGCCA-AGA
* * *** ** * * * * *
1343785 TTTTCCTTATATTTTGAGTTCGTA-TGTTAAAAGAAACAAACATGGATTCTTATAACAATCTTCA
1 TTTTCCTTAGAATAAAAGTTTATACT-TTAAATGAGACAAACATGGA-TC-TAAAAAAATCTCCA
* * ** * * * **
1343849 TTCTTTCCATGATTAAGCAACCA-AAATGCATTCTTCTT-ATAT-GGATACA-AGATATTAATAC
63 TTCTTTCAATGATTGAGC-ACCATAAACACGTT-ATCTTCAT-TGGGATACACA-ATATTGACGC
* * *** * * * *
1343910 TTTGATTTCATAAGAAAAG-TTTTTTTCCCTACA
124 ATTGGTTTTGCAAGAAAAGCTTTTCTTGCCAAGA
* * *
1343943 CTTTTCCTTAGAATAAAAGTTTATACCTTAAATGAGACCAACATGGATCTACAAAAAAAACTCCA
1 -TTTTCCTTAGAATAAAAGTTTATACTTTAAATGAGACAAACATGGATCT--AAAAAAATCTCCA
* * * * * * *
1344008 TTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCTTTGGGATGCACAATTTTAATGCATAG
63 TTCTTTCAATGATTGAGCACCATAAACACGTTATCTTCATTGGGATACACAATATTGACGCATTG
** * *
1344073 GTTAAGCAAGAAAGGCTTTTCTTGCCACGA
128 GTTTTGCAAGAAAAGCTTTTCTTGCCAAGA
* * *** ** * * *
1344103 TTTTCCTTATATTTTGAGTTCGTA-TGTTAAATGAAACAAACATGGATTCTTATAATAATCTACC
1 TTTTCCTTAGAATAAAAGTTTATACT-TTAAATGAGACAAACATGGA-TC-TAAAAAAATCT-CC
* * * ** *
1344167 -TTATTTTC-ATGATT-AG--CCATGCGAAACACATTCTCTTTTTTGGGATACACGATATT-AGC
62 ATT-CTTTCAATGATTGAGCACCAT---AAACACGTTATCTTCATTGGGATACACAATATTGA-C
* *** * * *
1344226 GCATTGATTTCATAAGAAAAG-TTTTTTTCTCCACTG-
122 GCATTGGTTTTGCAAGAAAAGCTTTTCTT-GCCA-AGA
* ** * * * * *
1344262 TTTTCCTTTGAACCAAAGTTTAAACCTTAAATGAGATAAACACGGATCTATGCAAAAATCTCCAT
1 TTTTCCTTAGAATAAAAGTTTATACTTTAAATGAGACAAACATGGATCTA--AAAAAATCTCCAT
* * * ** * * *
1344327 TCTTTCAATGATTGGGCACCATAAACACGTTATCTACTTTGGGACGCATAGTATTGACGCATAGG
64 TCTTTCAATGATTGAGCACCATAAACACGTTATCTTCATTGGGATACACAATATTGACGCATTGG
* * **
1344392 TTATGCAAGAAACGCTTTTCTTGCCGCGA
129 TTTTGCAAGAAAAGCTTTTCTTGCCAAGA
* * **** * ** * * *
1344421 TTTTCCTTATATTTTGGGTTCT-TA-TGTTAAATGAAACAAACATAAATTCTTATAATAATCTTC
1 TTTTCCTTAGAATAAAAGTT-TATACT-TTAAATGAGACAAACATGGA-TC-TAAAAAAATCTCC
** * * * * *
1344484 ATTCTTTCCTTAATT-AGGCAACCA-AAACA---TATTCTCCATTTTGGGATACACGATATTAAT
62 ATTCTTTCAATGATTGA-GC-ACCATAAACACGTTA-TCTTCA--TTGGGATACACAATATTGAC
* * * * * **
1344544 GCTTTGATTTTGTAAGCAAAG-TTTT-TTTCTCATCCA
122 GCATTGGTTTTGCAAGAAAAGCTTTTCTTGC-CA-AGA
* * * * * *
1344580 TTTTCCTTAGAATCAAAGTTTAAATTTTAAATGAGACAAACATGGATCTACGCAAAAATCTTCGT
1 TTTTCCTTAGAATAAAAGTTTATACTTTAAATGAGACAAACATGGATCTA--AAAAAATCTCCAT
* * * * ** * * * * *
1344645 TGTTTCAATGTTTGGGCACCATAAACATGTTATCTTTTTTGGGATGCATAGTATTTACGCATAGG
64 TCTTTCAATGATTGAGCACCATAAACACGTTATCTTCATTGGGATACACAATATTGACGCATTGG
* * *
1344710 TTATGCAAGAAAGGCTTTTCTTGCCACGA
129 TTTTGCAAGAAAAGCTTTTCTTGCCAAGA
* * *** ** * * * *
1344739 TTTTCCTTATATTTTGAGTTCGTA-TGTTAAATGAAACAAACATGGATTCTTATAACAATCTTCA
1 TTTTCCTTAGAATAAAAGTTTATACT-TTAAATGAGACAAACATGGA-TC-TAAAAAAATCTCCA
* * * * * * * * * * *
1344803 TTCTTTCCATGATTAAGCAACCA-AAACGCATTCTTCTT-ATTTGAATGCA-AGATATTAATGCT
63 TTCTTTCAATGATTGAGC-ACCATAAACACGTT-ATCTTCATTGGGATACACA-ATATTGACGCA
* *** * * *
1344865 TTGATTTCATAAGCAAAG-TTTT-TTCCCCTACCG-
125 TTGGTTTTGCAAGAAAAGCTTTTCTT-GCC-A-AGA
* * * *
1344898 TTTTCCTTATAATAAAAGTTTATACCTTAAATCAGACAAATATGGATCTACGAAAAAATCTCCAT
1 TTTTCCTTAGAATAAAAGTTTATACTTTAAATGAGACAAACATGGATCTA--AAAAAATCTCCAT
* * *** *
1344963 TCTTTCAATGATTGGGCACCATAAACACGTTATCTT-ATTTGGGATGCATGGTATTGACGCATAG
64 TCTTTCAATGATTGAGCACCATAAACACGTTATCTTCA-TTGGGATACACAATATTGACGCATTG
* *
1345027 GTTATGCAAGAAAAG-TTGTTCTTGCCACGA
128 GTTTTGCAAGAAAAGCTT-TTCTTGCCAAGA
* * * *** * * * * * *
1345057 TTTTCCATATATTCTGAGTTCATA-TGTTAAATGAAAAAAACATGGATTCTCATAATAATCTTCA
1 TTTTCCTTAGAATAAAAGTTTATACT-TTAAATGAGACAAACATGGA-TCT-AAAAAAATCTCCA
* * * * * * * ** * *
1345121 TTCTTTCCATGAAT-AGGCAACCA-AAGCGCGTTCTCCTT-ATTTGGATGCATGATATTAAGGCA
63 TTCTTTCAATGATTGA-GC-ACCATAAACACGTTAT-CTTCATTGGGATACACAATATTGACGCA
** * **
1345183 TT-CATTT-CATAGGAAAAG-TTTT-TTCTCCACCA
125 TTGGTTTTGCA-A-GAAAAGCTTTTCTT-GCCAAGA
* * * * * * **
1345215 TTTTCCTTGGAATCAAAGTTTAAACCTTATATGAGAGAAACATGGATCTACGCAAAATCTCCATT
1 TTTTCCTTAGAATAAAAGTTTATACTTTAAATGAGACAAACATGGATCTA-AAAAAATCTCCATT
* * * * * ** * * * * *
1345280 CTTTCAATGACTGGGCAGCATGAACACATTATCTTTTTTGGGATGCATAGTATTGACGCATAGCT
65 CTTTCAATGATTGAGCACCATAAACACGTTATCTTCATTGGGATACACAATATTGACGCATTGGT
* * * ** *
1345345 TATGTAACAATGGCTTTTCTTGCCACGA
130 TTTGCAAGAAAAGCTTTTCTTGCCAAGA
* * *** ** * * * * *
1345373 TTTTCCTTATATTTTGAGTTCGTA-TGTTAAAAGAAACAAACATGGATTCTTATAACAATCTTCA
1 TTTTCCTTAGAATAAAAGTTTATACT-TTAAATGAGACAAACATGGA-TC-TAAAAAAATCTCCA
* * * * *
1345437 TTCTTTCCATGATT-AGGCAACCA-AAACGC-AT-TCTTCATATATGGATACA-AGATATT-AAG
63 TTCTTTCAATGATTGA-GC-ACCATAAACACGTTATCTTCAT-T-GGGATACACA-ATATTGACG
* * *** * * * *
1345496 ACTTTGATTTCATAAGAAAAG-TTTTTTTCCCTAGCC
123 -CATTGGTTTTGCAAGAAAAGCTTTTCTTGCCAAG-A
* *
1345532 TTTTCCTTAGAATAAAAGTTTATACCTTAAATGAGACAAACATGGATCTACAAAAAAATATCCAT
1 TTTTCCTTAGAATAAAAGTTTATACTTTAAATGAGACAAACATGGATCT--AAAAAAATCTCCAT
* * * * * * *
1345597 TCTTTCAATGATTGGGCACCATAAACACATTATCTTCTTTGGGATGCACAGTATTAACGCATAGG
64 TCTTTCAATGATTGAGCACCATAAACACGTTATCTTCATTGGGATACACAATATTGACGCATTGG
* * *
1345662 TTATGCAAGAAAGGCTTTTCTTGCCATGA
129 TTTTGCAAGAAAAGCTTTTCTTGCCAAGA
* * *** * * * *
1345691 TTTTCCTTATATTTTGAGTTCATA-TATTAAATGAAACAAACATGGATTCTTATAATAATCTTCC
1 TTTTCCTTAGAATAAAAGTTTATACT-TTAAATGAGACAAACATGGA-TC-TAAAAAAATC-TCC
* * *
1345755 -TTCTTTTC-ATGATT-AGCCATCCA-AAACAC-AT-TCTTCTTTGTGGGATACACGATATT-AG
62 ATTC-TTTCAATGATTGAG-CA-CCATAAACACGTTATCTTC-AT-TGGGATACACAATATTGA-
* *** * * *
1345813 CGCATTGATTTCATAAGAAAAG-TTTTTTTCTCCACTG-
121 CGCATTGGTTTTGCAAGAAAAGCTTTTCTT-GCCA-AGA
* ** * * * *
1345850 TTTTCCTTTGAACCAAAGTTTAAACCTTAAATGAGACAAACACGGATCTATGCAAAAATCTCCAT
1 TTTTCCTTAGAATAAAAGTTTATACTTTAAATGAGACAAACATGGATCTA--AAAAAATCTCCAT
* * * * * * *
1345915 TCTTTTAATGATTGGGCACCATAAACACGTTATCTTCTTTGGGATGCATAGTATTGACGCATAGG
64 TCTTTCAATGATTGAGCACCATAAACACGTTATCTTCATTGGGATACACAATATTGACGCATTGG
* * *
1345980 TTATGCAAGAAAGGCCTTTCTTGCTGC-A-A
129 TTTTGCAAGAAAAGCTTTTCTTGC--CAAGA
* * **** ** * * * * *
1346009 TTTTCCTTATATTTTGGGTTCGTA-TGTTAAATGAAACAAACATAGATTCTTATAATAATCTTCA
1 TTTTCCTTAGAATAAAAGTTTATACT-TTAAATGAGACAAACATGGA-TC-TAAAAAAATCTCCA
** * * * * *
1346073 TTCTTTCCTTGATT-AGGCAACCA-AAACACATTCTCCGTT--TTGGGATACACGATATTAATGC
63 TTCTTTCAATGATTGA-GC-ACCATAAACACGTTAT-C-TTCATTGGGATACACAATATTGACGC
* * *** * * **
1346134 TTTGATTTCATAAGCAAAG-TTTT-TTTCTCATCCA
124 ATTGGTTTTGCAAGAAAAGCTTTTCTTGC-CA-AGA
* * * *
1346168 TTTTCCTTAGAATCAAAGTTTAAACTTTAAATGAGACAAACATGGATCTATTGAAAAATCTTCAT
1 TTTTCCTTAGAATAAAAGTTTATACTTTAAATGAGACAAACATGGATCTA--AAAAAATCTCCAT
* ** * * * * *
1346233 TCTTTCAATGATT-AGACACCATAAACATGTTATCTTTTTTGGGATGCATAGTATTGATGCATAG
64 TCTTTCAATGATTGAG-CACCATAAACACGTTATCTTCATTGGGATACACAATATTGACGCATTG
* * **
1346297 GTTATGCAAGAAAGGCTTTTCTTGCCACTA
128 GTTTTGCAAGAAAAGCTTTTCTTGCCAAGA
* * *** * * * * * * * *
1346327 TTTTCCTTATATTTTGACTATGTA-TGTTAAATGAAACAAACGTGGATTCTTAAAACAATCTTCT
1 TTTTCCTTAGAATAAAAGTTTATACT-TTAAATGAGACAAACATGGA-TC-TAAAAAAATCTCCA
* * * ** * *
1346391 TTCTTTCCATGATT-AGACAACCA-AAACACATTATCCTT-TTTGGTG-TACATGATATTAAGGC
63 TTCTTTCAATGATTGAG-C-ACCATAAACACGTTAT-CTTCATTGG-GATACACAATATTGACGC
* * *** * * * *
1346452 TTTGATTTCATAAGAAAAGATTTT-TTCTCCACCGTTT
124 ATTGGTTTTGCAAGAAAAGCTTTTCTT-GCCA-AG--A
** * ** * * *
1346489 TTTTTTTTTGAAGCAAAGTTTAGACCTTAAATGAGACAAA-AGTGGATCTATGCAAATAATCTCC
1 TTTTCCTTAGAATAAAAGTTTATACTTTAAATGAGACAAACA-TGGATCTA---AAAAAATCTCC
* * * * * * * *
1346553 ATTATTTTAATGATTGGGCACCATAAACACATTATTTTCATTGGGATGCACAACACTGACGCATT
62 ATTCTTTCAATGATTGAGCACCATAAACACGTTATCTTCATTGGGATACACAATATTGACGCATT
* * *
1346618 GGTTATGCAAGAAAAGCTTTTCTTGTCATGA
127 GGTTTTGCAAGAAAAGCTTTTCTTGCCAAGA
* * * *** * * * * *
1346649 TTTTCCATATATTTTGAGTTTGTA-TGTTAAATGAAACAAACAAT-GATTCTTATAATAATCTTC
1 TTTTCCTTAGAATAAAAGTTTATACT-TTAAATGAGACAAAC-ATGGA-TC-TAAAAAAATCTCC
* * * * **
1346712 ATAAT-TTTC-ATGACT-AGGCAACCA-AAACACATTCTCCTT-TTTGGGATACATGATATT-AG
62 AT--TCTTTCAATGATTGA-GC-ACCATAAACACGTTAT-CTTCATTGGGATACACAATATTGA-
* *** * * *
1346771 CGCATTGATTTCATAAGAAAAG-TTTTTTTCTCCACTG-
121 CGCATTGGTTTTGCAAGAAAAGCTTTTCTT-GCCA-AGA
* ** * * ** **
1346808 TTTTCCTTTGAACCAAAGTTTAAACCTTAAATGAGACAAACACAGATCCATGCAAAAATCTCCAT
1 TTTTCCTTAGAATAAAAGTTTATACTTTAAATGAGACAAACATGGAT-C-TAAAAAAATCTCCAT
* * * * * *
1346873 TCTTTCAATGATTGGGCACCATAAACACGTTATCTTCTTTGGGATGCATAGTATTGACGCATAGG
64 TCTTTCAATGATTGAGCACCATAAACACGTTATCTTCATTGGGATACACAATATTGACGCATTGG
* * *
1346938 TTATGCAAGAAAGGCTTTTCTTGCCGCA-A
129 TTTTGCAAGAAAAGCTTTTCTTGCC-AAGA
** * **** ** * * * *
1346967 TTTTCCTTCTATTTTGGGTTCCTA-TGTTAAATGAAACAAACATAGATTCTTATAATAATCAT-C
1 TTTTCCTTAGAATAAAAGTTTATACT-TTAAATGAGACAAACATGGA-TC-TAAAAAAATC-TCC
* ** * * * * *
1347030 GTTCTTTCCTTGATT-AGGCAACCA-AAACAC-AT-TCTCCATTTTGGGATACACGATATTAATG
62 ATTCTTTCAATGATTGA-GC-ACCATAAACACGTTATCTTCA--TTGGGATACACAATATTGACG
* *** * * **
1347091 CTTTGGTTTCATAAGCAAAG-TTTT-TTTCTCACCCA
123 CATTGGTTTTGCAAGAAAAGCTTTTCTTGC-CA-AGA
* * * * *
1347126 TTTTCCTTAGAATCAAAGTTTAAACTTTAAATGAGACAAACATGGATCTATGCAAAAATCTTCGT
1 TTTTCCTTAGAATAAAAGTTTATACTTTAAATGAGACAAACATGGATCTA--AAAAAATCTCCAT
* * ** * * * *
1347191 TCTTTCAATGATTGGGCACCATAAACATGTTATCTTTTTTGGGATGCATAGTATTGATGCATAT-
64 TCTTTCAATGATTGAGCACCATAAACACGTTATCTTCATTGGGATACACAATATTGACGCAT-TG
* * **
1347255 GTTATGCAAGAAAGGCTTTTCTTGCCACTA
128 GTTTTGCAAGAAAAGCTTTTCTTGCCAAGA
* * *** *** * * *
1347285 TTTTCCTTATATTTTGAGTACGTA-TGTTAAATGAAACAAACATGGATTCTTAAAACAATCTTCA
1 TTTTCCTTAGAATAAAAGTTTATACT-TTAAATGAGACAAACATGGA-TC-TAAAAAAATCTCCA
* * * * ** * *
1347349 TTCTTTCCATGACT-AGACAACCA-AAACACATTATCCTT-TTTGGTG-TACATGATATTAAGGC
63 TTCTTTCAATGATTGAG-C-ACCATAAACACGTTAT-CTTCATTGG-GATACACAATATTGACGC
* * *** * * *
1347410 TTTGATTTCATAAGAAAAG-TTTTTTTCTCCACCG-
124 ATTGGTTTTGCAAGAAAAGCTTTTCTT-GCCA-AGA
* * ** * *
1347444 TTTTTCTTTGAAGCAAAGTTTATA-TCTTAAATGAGACAAACGTGGATCTATGCAAATAATCTCC
1 TTTTCCTTAGAATAAAAGTTTATACT-TTAAATGAGACAAACATGGATCTA---AAAAAATCTCC
* * * * * * * * *
1347508 ATTCTTTTAATGATTGGGCACCATAAACACATGATTTTCATTGGGATGCACAACACTAACGCATT
62 ATTCTTTCAATGATTGAGCACCATAAACACGTTATCTTCATTGGGATACACAATATTGACGCATT
* * *
1347573 GGTTATGCAAGAAAAGCTTTTCTTGTCATGA
127 GGTTTTGCAAGAAAAGCTTTTCTTGCCAAGA
* * * *** ** * * *
1347604 TTTTCCATATATTTTGAGTTCGTA-TGTT-AA--A-AC--A-AT-GATTCTTATAATAATCTTCA
1 TTTTCCTTAGAATAAAAGTTTATACT-TTAAATGAGACAAACATGGA-TC-TAAAAAAATCTCCA
* * * * * * **
1347660 TAAT-TTTC-ATGACT-AGGCAACCA-AAACACATTCTCCTT-TTTGGGATACACGATATTAATA
63 T--TCTTTCAATGATTGA-GC-ACCATAAACACGTTAT-CTTCATTGGGATACACAATATTGACG
* * *** *
1347720 CTTTGATTTCATAAGAAAAG-TTTT-TT-CTCTAACA
123 CATTGGTTTTGCAAGAAAAGCTTTTCTTGC-C-AAGA
** * * *
1347754 TTTTGTTTAGAATAAAAATTCATACTTTAAATGAGACAAACATGGATCTACGAAAAAAATATCCA
1 TTTTCCTTAGAATAAAAGTTTATACTTTAAATGAGACAAACATGGATCT---AAAAAAATCTCCA
* * * *
1347819 TTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTGAGATACACAAAATTGAGGCATTG
63 TTCTTTCAATGATTGAGCACCATAAACACGTTATCTTCATTGGGATACACAATATTGACGCATTG
*
1347884 GTTTTGCAAGAAAAGCTTTTCTTGCCATGA
128 GTTTTGCAAGAAAAGCTTTTCTTGCCAAGA
* * * *** ** ** * * * * *
1347914 TTTTTCTTATATTTTGAGTTCGTAGGTTAAATG-GAACAAACAAGTATTCTTATAATAATCTTCA
1 TTTTCCTTAGAATAAAAGTTTATACTTTAAATGAG-ACAAACATGGA-TC-TAAAAAAATCTCCA
* * * * * * *** *
1347978 TT-TTTCCATGATT-AGGCAACC--AAACTGCATTCTCCTAATTTGGG-TACATGGTATTAACGC
63 TTCTTTCAATGATTGA-GC-ACCATAAAC-ACGTTATCTTCA-TTGGGATACACAATATTGACGC
* * **** *
1348038 TTTGATTACATAAG-AAAG-TTTT-TTTCTCAATCG-
124 ATTGGTTTTGCAAGAAAAGCTTTTCTTGC-CAA--GA
*
1348071 TTTT-CTTCAGAATAAAAGTTTAGACTTTAAATGAGACAAACATGGATCTACAAAAAAAATCTCC
1 TTTTCCTT-AGAATAAAAGTTTATACTTTAAATGAGACAAACATGGATCT---AAAAAAATCTCC
* * * * * *
1348135 ATTCTTTCAATGATTGGGCACCATAAACACATTCTCTTCATTAGGATGCACAATATTGACACATT
62 ATTCTTTCAATGATTGAGCACCATAAACACGTTATCTTCATTGGGATACACAATATTGACGCATT
** *
1348200 GGTCATGCAAGAAAAGCTTTTCTTGCCACGA
127 GGTTTTGCAAGAAAAGCTTTTCTTGCCAAGA
* * * *** ** * * * * * *
1348231 TTTTTCTTATATTTGGAGTTCGTA-TGTTAAAAGAAATAAACATAGATTCTTATAAAAATCTTCA
1 TTTTCCTTAGAATAAAAGTTTATACT-TTAAATGAGACAAACATGGA-TC-TAAAAAAATCTCCA
** * * ** ** * *
1348295 TTCTTTCCTTGATT-AGGCAACCA-AAACAC-AT-TCTCCATTTTATGATACATGATATTAATGC
63 TTCTTTCAATGATTGA-GC-ACCATAAACACGTTATCTTCA--TTGGGATACACAATATTGACGC
* * ** * * * * **
1348356 TTTGATTTTATAAGCAATG-TTTTTTTCTCCACCA
124 ATTGGTTTTGCAAGAAAAGCTTTTCTT-GCCAAGA
* * * * * *
1348390 TTTTCCTTAGAATCAAAGTTTAAACGTTAAATGAGACAAAAATGGATATATGCAAAAATCTCCAT
1 TTTTCCTTAGAATAAAAGTTTATACTTTAAATGAGACAAACATGGATCTA--AAAAAATCTCCAT
* * * * * * *
1348455 TTTTTTAGTGATTGGGCACCATAAACACGTTATCTTCTTTGGGATGCACAGTATTGACGCATAT-
64 TCTTTCAATGATTGAGCACCATAAACACGTTATCTTCATTGGGATACACAATATTGACGCAT-TG
* * *
1348519 GTTATGCAAGAAAGGCTTTTCTTGCCACGA
128 GTTTTGCAAGAAAAGCTTTTCTTGCCAAGA
*** * * * * ** *
1348549 TTTTCCTTA-AATTTTGAGTTCT-TATTTTAAATGAAACAAACATAGATTCTTATAGTAATCTTC
1 TTTTCCTTAGAA-TAAAAGTT-TATACTTTAAATGAGACAAACATGGA-TC-TAAAAAAATCTCC
* * * * * *
1348612 ATTCTTTCCATGATTTG-GCAACCA-AAACACGTTCTCCTT-ATTTGGATACACGATATTAATGC
62 ATTCTTTCAATGA-TTGAGC-ACCATAAACACGTTAT-CTTCATTGGGATACACAATATTGACGC
* * *** * *
1348674 TTTGATTTCATAAGAAAAG-TTTT-TTTCTATACCG-
124 ATTGGTTTTGCAAGAAAAGCTTTTCTTGCCA-A--GA
* *
1348708 TTTTCCTTAGAATAAAAGTTTATACCTTAAATGAGACAAACAAGGATCTACGAAAAAATCTCCAT
1 TTTTCCTTAGAATAAAAGTTTATACTTTAAATGAGACAAACATGGATCTA--AAAAAATCTCCAT
* * * *
1348773 TCTTCCAATGATTGAGCACCATAAACACGCTATCTTC-TTCGGGATATACAAAATTGACGCATTG
64 TCTTTCAATGATTGAGCACCATAAACACGTTATCTTCATT-GGGATACACAATATTGACGCATTG
*
1348837 GTTTTGCAAGAAAAGCTTTTCTTGCCATGA
128 GTTTTGCAAGAAAAGCTTTTCTTGCCAAGA
* *** *** * * * * * * *
1348867 TTTTCCTCATTTTTTGAGTTCATA-TGTTAAGTGAAACAAACATGGATTCTTATAACAATATTCA
1 TTTTCCTTAGAATAAAAGTTTATACT-TTAAATGAGACAAACATGGA-TC-TAAAAAAATCTCCA
* * * * * * ** *
1348931 TTCTTTCCATGATT-AGGCAACCA-AAACGCGTTCTCCTT-ATTTGGATACACGATATTAATTCT
63 TTCTTTCAATGATTGA-GC-ACCATAAACACGTTAT-CTTCATTGGGATACACAATATTGACGCA
* *** * *
1348993 TTGATTTCATAAGAAAAG-TTTT-TTTCTCAATCA
125 TTGGTTTTGCAAGAAAAGCTTTTCTTGC-CAA-GA
* *
1349026 TTTTCCTCAGAATAAAAGTTTATACTTTAAATGAGACAAACATGGATCTACGAAAAAATATCCAT
1 TTTTCCTTAGAATAAAAGTTTATACTTTAAATGAGACAAACATGGATCTA--AAAAAATCTCCAT
* * * *
1349091 TCTTTCAAGGATTGAGCACCATCAACACATTATCTTCATTGGGATACACAAAATTGACGCATTGG
64 TCTTTCAATGATTGAGCACCATAAACACGTTATCTTCATTGGGATACACAATATTGACGCATTGG
1349156 TTTTGCAAGAAAAGCTTTTCTTGCCAAGA
129 TTTTGCAAGAAAAGCTTTTCTTGCCAAGA
1349185 TTTTCCTTA
1 TTTTCCTTA
1349194 TAATTTGAGT
Statistics
Matches: 5391, Mismatches: 1757, Indels: 968
0.66 0.22 0.12
Matches are distributed among these distances:
149 3 0.00
150 22 0.00
151 59 0.01
152 11 0.00
153 5 0.00
154 5 0.00
155 4 0.00
156 36 0.01
157 266 0.05
158 788 0.15
159 3354 0.62
160 544 0.10
161 165 0.03
162 62 0.01
163 64 0.01
164 3 0.00
ACGTcount: A:0.33, C:0.17, G:0.14, T:0.37
Consensus pattern (157 bp):
TTTTCCTTAGAATAAAAGTTTATACTTTAAATGAGACAAACATGGATCTAAAAAAATCTCCATTC
TTTCAATGATTGAGCACCATAAACACGTTATCTTCATTGGGATACACAATATTGACGCATTGGTT
TTGCAAGAAAAGCTTTTCTTGCCAAGA
Found at i:1353187 original size:159 final size:158
Alignment explanation
Indices: 1352786--1353936 Score: 734
Period size: 159 Copynumber: 7.2 Consensus size: 158
1352776 TAAACACATT
* * *
1352786 ATCTTCATTCTTTCCATGATTAGGCAACCAAAACGCGTTCTCCTTATTTGGATACACGATATTAA
1 ATCTTCATTCTTTCCATGATTAGGCAACCAAAACACGTTCTCCTGATTTGGATACAAGATATTAA
* * ** *
1352851 TGCTTTCATTTCATAAGAAAA-GTTTT-TTTCTCAATCGTTTTCCTTATAAAAAAAGTTTATACT
66 TGCTTTGATTTCATAAGAAAAGGTTTTCTTGC-CAATCGTTTTCCTTATAATTAAAGTTCATA-T
* *
1352914 -TTAAATGAGCCAAACATAGATCTACGAAAAA
129 GTTAAATGAGCCAAACATGGATCTA--TAAAA
** * * * * * *
1352945 ATCACCATTCTTTCAATGATTGGGC-ACCATAAACACGTTATCTTCG-TTGGGATGCACA-ATAT
1 ATCTTCATTCTTTCCATGATTAGGCAACCA-AAACACGTTCTCCT-GATTTGGATACA-AGATAT
* * * * *** * ** *
1353007 TGACGCATTGGTTTTGCAAGAAAAGGTTTTCTTGCC-AT-GATTTTCCTTATATTTTGAGTTCCT
63 TAATGCTTTGATTTCATAAGAAAAGGTTTTCTTGCCAATCG-TTTTCCTTATAATTAAAGTTCAT
*
1353070 ATGTTAAATGAAG-CAAACATGGATTCTTATAATA
127 ATGTTAAATG-AGCCAAACATGGA-TC-TATAAAA
*
1353104 ATCTTCATTCTTTCCATGATTAGGCAACCAAAACACATTCTCCTGATTTGGATACAAGATATTAA
1 ATCTTCATTCTTTCCATGATTAGGCAACCAAAACACGTTCTCCTGATTTGGATACAAGATATTAA
* ** *
1353169 TGCTTTGATTTCATAAGAAAA-GTTTT-TTTCTCAATCGTTTTCCTTATAAAAAAAGTTTATACT
66 TGCTTTGATTTCATAAGAAAAGGTTTTCTTGC-CAATCGTTTTCCTTATAATTAAAGTTCATA-T
* *
1353232 -TTAAATGAGCCAAACATAGATCTACGAAAAA
129 GTTAAATGAGCCAAACATGGATCTA--TAAAA
** * * * * * *
1353263 ATCACCATTCTTTCAATGATTGGGC-ACCATAAACACGTTATCTTCG-TTGGGATGCACA-ATAT
1 ATCTTCATTCTTTCCATGATTAGGCAACCA-AAACACGTTCTCCT-GATTTGGATACA-AGATAT
* * * * ** * **
1353325 TGACGCATTGGTTTTGTAAGAAAAGGTTTTCTTGCC-AT-GATTTTCCTTATATTTTGAGTTCAT
63 TAATGCTTTGATTTCATAAGAAAAGGTTTTCTTGCCAATCG-TTTTCCTTATAATTAAAGTTCAT
*
1353388 ATGTTAAATGAAG-CAAACATGGATTCTTATAATA
127 ATGTTAAATG-AGCCAAACATGGA-TC-TATAAAA
* *
1353422 ATCTTCATTCTTTCCATGATTAGGCAACCAAAACACATTCTCCTGATTTGGATACAGGATATTAA
1 ATCTTCATTCTTTCCATGATTAGGCAACCAAAACACGTTCTCCTGATTTGGATACAAGATATTAA
* * * * * * * * *
1353487 TGCTTTGATTTCCTAAGGAAA-GTTTTTTTCCCAATCGTTTTCCTTACAATCAAAGTTTAAATCT
66 TGCTTTGATTTCATAAGAAAAGGTTTTCTTGCCAATCGTTTTCCTTATAATTAAAGTTCATATGT
*
1353551 TAAATGAGACAAACATGGATCTATGCAAAA
131 TAAATGAGCCAAACATGGATCTAT--AAAA
* * * * * ** *
1353581 ATCTCCTTTCTTT-CATTAGTTAGGC-ACCATAAACATGTTAT-CTTCTTTGGGATGCACAG-TA
1 ATCTTCATTCTTTCCATGA-TTAGGCAACCA-AAACACGTTCTCCTGATTT-GGATACA-AGATA
* * * * * * **
1353642 TTGACGCATAG-CTT-ATGCAAGAAAAGATTTTCTTGCC-A-CGATTTTCCTTATAATTTGAGTT
62 TTAATGCTTTGATTTCAT--AAGAAAAGGTTTTCTTGCCAATCG-TTTTCCTTATAATTAAAGTT
* **
1353703 CGTATGTTAAATGAAACAAACATGGATTCTTATAAAA
124 CATATGTTAAATGAGCCAAACATGGA-TC-TATAAAA
** * * * * *
1353740 ATCTTCACACTTAT-CTTGATTAGGCAACCAAAACACATTCTCCT-TTTTGGGATATATGATATT
1 ATCTTCATTCTT-TCCATGATTAGGCAACCAAAACACGTTCTCCTGATTT-GGATACAAGATATT
* * * * * * *
1353803 AATGCTATGATTTCATGAGAAAA-GTTTT-TT-CTCTACCATTTTCCTTAGAATAAAAGCTT-AT
64 AATGCTTTGATTTCATAAGAAAAGGTTTTCTTGC-CAATCGTTTTCCTTATAATTAAAG-TTCAT
* * *
1353864 ACT-TTGAATGAGACAAACATGGATCTACGAAAAA
127 A-TGTTAAATGAGCCAAACATGGATCTA--TAAAA
* * *
1353898 ATCTCCATTCTTTCAATGATTGGGC-ACCATAAACACGTT
1 ATCTTCATTCTTTCCATGATTAGGCAACCA-AAACACGTT
1353937 ATCTTCATTC
Statistics
Matches: 753, Mismatches: 176, Indels: 127
0.71 0.17 0.12
Matches are distributed among these distances:
156 3 0.00
157 19 0.03
158 124 0.16
159 536 0.71
160 56 0.07
161 15 0.02
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (158 bp):
ATCTTCATTCTTTCCATGATTAGGCAACCAAAACACGTTCTCCTGATTTGGATACAAGATATTAA
TGCTTTGATTTCATAAGAAAAGGTTTTCTTGCCAATCGTTTTCCTTATAATTAAAGTTCATATGT
TAAATGAGCCAAACATGGATCTATAAAA
Found at i:1353363 original size:318 final size:318
Alignment explanation
Indices: 1352786--1356404 Score: 1817
Period size: 318 Copynumber: 11.3 Consensus size: 318
1352776 TAAACACATT
* * * *
1352786 ATCTTCATTCTTTCCATGATTAGGCAACCAAAACGCGTTCTCCTTATTTGGATACACGATATTAA
1 ATCTTCATTCTTTCCATGATTAGGCAACCAAAACACATTCTCCTGATTTGGATACAAGATATTAA
*
1352851 TGCTTTCATTTCATAAGAAAAGTTTTTTTCTCAATCGTTTTCCTTATAAAAAAAGTTTATACTTT
66 TGCTTTGATTTCATAAGAAAAGTTTTTTTCTCAATCGTTTTCCTTATAAAAAAAGTTTATACTTT
*
1352916 AAATGAGCCAAACATAGATCTACGAAAAAATCACCATTCTTTCAATGATTGGGCACCATAAACAC
131 AAATGAGACAAACATAGATCTACGAAAAAATCACCATTCTTTCAATGATTGGGCACCATAAACAC
1352981 GTTATCTTCGTTGGGATGCACAATATTGACGCATTGGTTTTGCAAGAAAAGGTTTTCTTGCCATG
196 GTTATCTTCGTTGGGATGCACAATATTGACGCATTGGTTTTGCAAGAAAAGGTTTTCTTGCCATG
*
1353046 ATTTTCCTTATATTTTGAGTTCCTATGTTAAATGAAGCAAACATGGATTCTTATAATA
261 ATTTTCCTTATATTTTGAGTTCATATGTTAAATGAAGCAAACATGGATTCTTATAATA
1353104 ATCTTCATTCTTTCCATGATTAGGCAACCAAAACACATTCTCCTGATTTGGATACAAGATATTAA
1 ATCTTCATTCTTTCCATGATTAGGCAACCAAAACACATTCTCCTGATTTGGATACAAGATATTAA
1353169 TGCTTTGATTTCATAAGAAAAGTTTTTTTCTCAATCGTTTTCCTTATAAAAAAAGTTTATACTTT
66 TGCTTTGATTTCATAAGAAAAGTTTTTTTCTCAATCGTTTTCCTTATAAAAAAAGTTTATACTTT
*
1353234 AAATGAGCCAAACATAGATCTACGAAAAAATCACCATTCTTTCAATGATTGGGCACCATAAACAC
131 AAATGAGACAAACATAGATCTACGAAAAAATCACCATTCTTTCAATGATTGGGCACCATAAACAC
*
1353299 GTTATCTTCGTTGGGATGCACAATATTGACGCATTGGTTTTGTAAGAAAAGGTTTTCTTGCCATG
196 GTTATCTTCGTTGGGATGCACAATATTGACGCATTGGTTTTGCAAGAAAAGGTTTTCTTGCCATG
1353364 ATTTTCCTTATATTTTGAGTTCATATGTTAAATGAAGCAAACATGGATTCTTATAATA
261 ATTTTCCTTATATTTTGAGTTCATATGTTAAATGAAGCAAACATGGATTCTTATAATA
*
1353422 ATCTTCATTCTTTCCATGATTAGGCAACCAAAACACATTCTCCTGATTTGGATACAGGATATTAA
1 ATCTTCATTCTTTCCATGATTAGGCAACCAAAACACATTCTCCTGATTTGGATACAAGATATTAA
* * * * ** *
1353487 TGCTTTGATTTCCTAAGGAAAGTTTTTTTCCCAATCGTTTTCCTTACAATCAAAGTTTA-AATCT
66 TGCTTTGATTTCATAAGAAAAGTTTTTTTCTCAATCGTTTTCCTTATAAAAAAAGTTTATACT-T
* * * * * * *
1353551 TAAATGAGACAAACATGGATCTATGCAAAAATCTCCTTTCTTTC-ATTAGTTAGGCACCATAAAC
130 TAAATGAGACAAACATAGATCTACGAAAAAATCACCATTCTTTCAATGA-TTGGGCACCATAAAC
* * * * * * *
1353615 ATGTTATCTTCTTTGGGATGCACAGTATTGACGCATAGCTTATGCAAGAAAAGATTTTCTTGCCA
194 ACGTTATCTTCGTTGGGATGCACAATATTGACGCATTGGTTTTGCAAGAAAAGGTTTTCTTGCCA
* * * * *
1353680 CGATTTTCCTTATAATTTGAGTTCGTATGTTAAATGAAACAAACATGGATTCTTATAAAA
259 TGATTTTCCTTATATTTTGAGTTCATATGTTAAATGAAGCAAACATGGATTCTTATAATA
** * * * *
1353740 ATCTTCACACTTAT-CTTGATTAGGCAACCAAAACACATTCTCCT-TTTTGGGATATATGATATT
1 ATCTTCATTCTT-TCCATGATTAGGCAACCAAAACACATTCTCCTGATTT-GGATACAAGATATT
* * * * * * * *
1353803 AATGCTATGATTTCATGAGAAAAG-TTTTTTCTCTACCATTTTCCTTAGAATAAAAGCTTATACT
64 AATGCTTTGATTTCATAAGAAAAGTTTTTTTCTCAATCGTTTTCCTTATAAAAAAAGTTTATACT
* * *
1353867 TTGAATGAGACAAACATGGATCTACGAAAAAATCTCCATTCTTTCAATGATTGGGCACCATAAAC
129 TTAAATGAGACAAACATAGATCTACGAAAAAATCACCATTCTTTCAATGATTGGGCACCATAAAC
* ** * * * * * * * *
1353932 ACGTTATCTTCATTCTTTCCATGATTAGGCAAACAAAATGCGTTCTCCTT-ATTTGGATACACGA
194 ACGTTA---TC-TTCGTT--GGGA-T--GC--ACAATAT-TG-ACGCATTGGTTT---TGCAAGA
* ** * * * * *
1353996 TATTAATGCTTTGATT-TCATGAGAAAAGTTTT-TTTCTCAACCGTTTTCCA-TACAATTAAAGT
243 -A--AA-GGTTTTCTTGCCAT--G---A-TTTTCCTTAT--A---TTTT-GAGTTC-A-T--A-T
* * *
1354058 TTATACTTTACATGACA-CAAACATGGA-TC-TACAAAAA
287 GT-TA----A-ATGA-AGCAAACATGGATTCTTA-TAATA
* * * * * * * * *
1354095 AGTC-ACTATTCTTTCAATGATTGGGC-ACCATAAACACGTTATCTTTG-TTGGGATGCCCA-AT
1 A-TCTTC-ATTCTTTCCATGATTAGGCAACCA-AAACACATTCTC-CTGATTTGGAT-ACAAGAT
* ** * * *** * * *****
1354156 ATTGACACATTGGTTTTGCAAGAAAAGGTTTTCTTAC-C-AT-GATTTTCCTAATATTTTGAGTT
61 ATTAATGCTTTGATTTCATAAGAAAA-GTTTT-TTTCTCAATCG-TTTTCCTTATAAAAAAAGTT
** * * * * ** * * *
1354218 CGTA-TGTTAAATGAAACAAACATGGATTCTTA--TAATAATCTTCATTCTTTCCACGATTAGGC
123 TATACT-TTAAATGAGACAAACATAGA-TC-TACGAAAAAATCACCATTCTTTCAATGATTGGGC
* * * * * ** * * * * *
1354280 AACCA-AAACACATTCTCCT-GATTTGGATACAGGATATTAATC-CTTTGATTTCGTAAGAAAA-
185 -ACCATAAACACGTTATCTTCG-TTGGGATGCACAATATTGA-CGCATTGGTTTTGCAAGAAAAG
* ** * *** * * **
1354341 GTTTT-TTTCTCAATCG-TTTTCCTTGGAATCAAAGTTTAAACCTTAAATG-AGACAAACATGGA
247 GTTTTCTTGC-C-AT-GATTTTCCTTATATTTTGAGTTCATATGTTAAATGAAG-CAAACATGGA
* *
1354403 -TC-GATGCAAAA
308 TTCTTAT--AATA
* * * * * * * * **
1354414 ATC-TCGTTTCTTTCAATGGTTGGGC-AGCATAAACCCGTTAT-CTTCTTTGGGA-AGCATAG-T
1 ATCTTC-ATTCTTTCCATGATTAGGCAACCA-AAACACATTCTCCTGATTT-GGATA-CA-AGAT
* * * * * * ** * * *****
1354474 ATTGACGCATAGGTTACGCAAGAAAGACTTTTCTTGC-C-A-CGATTTTCCTTATATTTTGAGTT
61 ATTAATGCTTTGATTTCATAAGAAA-AGTTTT-TTTCTCAATCG-TTTTCCTTATAAAAAAAGTT
** * ** * *
1354536 CGTA-TGTTAAATGAAACAAACACGGATTCTTA-TAAAAATATTCA-CA--CTTATC-ATGATTA
123 TATACT-TTAAATGAGACAAACATAGA-TC-TACGAAAAA-A-TCACCATTCTT-TCAATGATTG
** * * * ** * * * * * *
1354595 GGCATTGA-AAACACATTCTCCTT-TTTGGGATATACGAGATTAATGC-TTCGATTT-CATGAGA
182 GGCA-CCATAAACACGTTAT-CTTCGTTGGGATGCACAATATTGACGCATTGGTTTTGCA--AGA
** * * * *** *** *
1354656 AAA-GTTTT-TT-CTCTACCATTTCCCTTAGAATGAAAGCTT-ATCCATTGAATG-AGACAAACA
243 AAAGGTTTTCTTGC-C-ATGATTTTCCTTATATTTTGAG-TTCATATGTTAAATGAAG-CAAACA
* * *
1354716 TGGA-TCTACAGAAAA
304 TGGATTCT-TATAATA
* * * * * * * * * *
1354731 ATCTCCATTCTTTCAATGATTGGGC-GCCATAAACACGTTATCTTCATTAGGATGCACA-ATATT
1 ATCTTCATTCTTTCCATGATTAGGCAACCA-AAACACATTCTCCTGATTTGGATACA-AGATATT
* * * *** * * *****
1354794 GATGCATTGGTTTTGCAAGAAAAGCTTTTCTTGC-C-AT-GATTTTCCTCATATTTTCAGTTCGT
64 AATGCTTTGATTTCATAAGAAAAG-TTTT-TTTCTCAATCG-TTTTCCTTATAAAAAAAGTT--T
* * * * * ** * * * *
1354856 ATA--TCAAATGAAACAAACATGGATTCTTA--TAGAAATCTTCATTCGTTCCATTATTAGGCAA
124 ATACTTTAAATGAGACAAACATAGA-TC-TACGAAAAAATCACCATTCTTTCAATGATTGGGC-A
* * * ** ** * * * * *** *
1354917 CCA-AAACGCATTCTCTTTATTTTGA--CACAAGATATTAATGCTTTGATTTCATAAGAAAAGCT
186 CCATAAACACGTTATCTTCGTTGGGATGCAC-A-ATATTGACGCATTGGTTTTGCAAGAAAAGGT
** * ** * *
1354979 TTT-TT-CTCAATCG-TTTTCCTTGGA-ATAAAGTTTAT-TCTTTAAAT-AAGACAAACATGGA-
249 TTTCTTGC-C-AT-GATTTTCCTTATATTTTGAGTTCATAT-GTTAAATGAAG-CAAACATGGAT
* *
1355037 TC-TACGAAAAA
309 TCTTA--TAATA
* * * * * * * * * * *
1355048 ATCTCCCTTCTTTCAATGATTGGGC-ATCATAAACACGTTTTCTTCATTGGGATACACA-AAATT
1 ATCTTCATTCTTTCCATGATTAGGCAACCA-AAACACATTCTCCTGATTTGGATACA-AGATATT
* * * * * * *****
1355111 GACGCATTGGTTT--TCAAGAAAAGCTCTTCTTGC-C-AT-GATTTTCCTTATATTTTGAGTTCG
64 AATGCTTTGATTTCAT-AAGAAAAG-T-TTTTTTCTCAATCG-TTTTCCTTATAAAAAAAGTT--
*
1355171 TAT-C-TTAAATGAAACAAACAT-G------G-----------ATTCTTTCAATGATTGGGCACC
123 TATACTTTAAATGAGACAAACATAGATCTACGAAAAAATCACCATTCTTTCAATGATTGGGCACC
* * * * *
1355216 ATAAACAGGTTATCTTCATTGGGATACACAAAATTGACGCATTGGTTTTGCAAGAAAAGCTTTTC
188 ATAAACACGTTATCTTCGTTGGGATGCACAATATTGACGCATTGGTTTTGCAAGAAAAGGTTTTC
* ***
1355281 TTGCCATGATTTTCCTTATATTTTGAGTTCGTATGTTAAATGAAATGAACATGGATTCTTATAAT
253 TTGCCATGATTTTCCTTATATTTTGAGTTCATATGTTAAATGAAGCAAACATGGATTCTTATAAT
1355346 A
318 A
* * * * * *
1355347 ATCTTCATTATTTCCATGATTGGGCAACCAAAACACATACTCCTTATTTGGATACACGGTATTAA
1 ATCTTCATTCTTTCCATGATTAGGCAACCAAAACACATTCTCCTGATTTGGATACAAGATATTAA
* * * * * *
1355412 TCCTTTGATTTCATAAGAAAAGTTTTTTTCTCAAACGTTTTCCTCA-GAATAAAGTTTATACATT
66 TGCTTTGATTTCATAAGAAAAGTTTTTTTCTCAATCGTTTTCCTTATAAAAAAAGTTTATACTTT
* * * * * * * *
1355476 AAATCAGACAAACATGGATCTACGAAAAAATCGCCATTCTATGAGTGATTAGGCACCATAAACAT
131 AAATGAGACAAACATAGATCTACGAAAAAATCACCATTCTTTCAATGATTGGGCACCATAAACAC
* *
1355541 GTTATCTTCGTTGGGATGCACAATATTAACGCATTGGTTTTGCAAGAAACGGTTTTCTTGCCATG
196 GTTATCTTCGTTGGGATGCACAATATTGACGCATTGGTTTTGCAAGAAAAGGTTTTCTTGCCATG
* * * * *
1355606 ATTTTCCTCATATTTTGAGTTCGTATGTTAAATGAAACAAACATGGATTCGTACAATA
261 ATTTTCCTTATATTTTGAGTTCATATGTTAAATGAAGCAAACATGGATTCTTATAATA
* * ** * * *
1355664 ATCTTCATTATTTCCATGATTAGGTAACCAAAATGCGTACTCCTTATTTGGATA-AACTG-TATT
1 ATCTTCATTCTTTCCATGATTAGGCAACCAAAACACATTCTCCTGATTTGGATACAA--GATATT
* *
1355727 AATCCTTTGATTTCATAAGAAAAGTTTTTTTCTCAATCATTTTCCTTA-AAATAAAAGTTTATAC
64 AATGCTTTGATTTCATAAGAAAAGTTTTTTTCTCAATCGTTTTCCTTATAAA-AAAAGTTTATAC
* * * * * *
1355791 TTTAAATGAGACAAACATGGATCAACAAAAAAATCTCCATTCTTTTAGTGATTGGGCACCATAAA
128 TTTAAATGAGACAAACATAGATCTACGAAAAAATCACCATTCTTTCAATGATTGGGCACCATAAA
* * *** ** * *
1355856 CACGTTATCTTCATCGGGATGCACAATATTGACGCATTGGTCAAGCCCGAAAAGCTTTTCTTACC
193 CACGTTATCTTCGTTGGGATGCACAATATTGACGCATTGGTTTTGCAAGAAAAGGTTTTCTTGCC
* * * * * *
1355921 ACGA-TTTCTCTTTTATTTTGAGTTCATATGTTAAATGAAACAAACATTGACTCTTATAAAA
258 ATGATTTTC-CTTATATTTTGAGTTCATATGTTAAATGAAGCAAACATGGATTCTTATAATA
* * * *
1355982 ATCTTCATTATTTCCATGATCAGGCAAGCAAAACACAATCTCC--ATTTTGGGATACACA-ATAT
1 ATCTTCATTCTTTCCATGATTAGGCAACCAAAACACATTCTCCTGA-TTT-GGATACA-AGATAT
* * * * *** *
1356044 TAATGCTTTGATTTCATAAGAAAAGTTTTTTTCTCCACCGTTTTCCATAGAATCGAAGTTTAAAC
63 TAATGCTTTGATTTCATAAGAAAAGTTTTTTTCTCAATCGTTTTCCTTATAAAAAAAGTTTATAC
* * * * * * * ** * **
1356109 CTTAAATAAGATAAAAATGGATCTATGCAAAAATCTTCATCCTTTCAATGATTGGGTGCCATAAA
128 TTTAAATGAGACAAACATAGATCTACGAAAAAATCACCATTCTTTCAATGATTGGGCACCATAAA
* * * ** * *
1356174 CACATTATCTTCTTTGGGATGCACAGTATTGATACATAGGTTATGCAAG-AAAGGCTTTTCTTGC
193 CACGTTATCTTCGTTGGGATGCACAATATTGACGCATTGGTTTTGCAAGAAAAGG-TTTTCTTGC
* * * * * *
1356238 CACGATTTTCCTTAAATTTTGTGTTCGTATGTTAAATGAAACAAACATGGATTCTTACAATA
257 CATGATTTTCCTTATATTTTGAGTTCATATGTTAAATGAAGCAAACATGGATTCTTATAATA
* ** * * * *
1356300 ATCTTCATTCTTTCTATGATTAGGTGACCAAAACACGTTCTCCTTATTTGGATACACGATATTAT
1 ATCTTCATTCTTTCCATGATTAGGCAACCAAAACACATTCTCCTGATTTGGATACAAGATATTAA
* * *
1356365 TACTTTGATTTGATAAGAAAAGTTTTCTTCTCAATCGTTT
66 TGCTTTGATTTCATAAGAAAAGTTTTTTTCTCAATCGTTT
1356405 AATGATTAGG
Statistics
Matches: 2652, Mismatches: 469, Indels: 360
0.76 0.13 0.10
Matches are distributed among these distances:
297 8 0.00
298 73 0.03
299 101 0.04
300 30 0.01
301 4 0.00
306 1 0.00
314 2 0.00
315 7 0.00
316 74 0.03
317 656 0.25
318 1384 0.52
319 29 0.01
320 7 0.00
321 8 0.00
323 4 0.00
324 2 0.00
325 1 0.00
326 2 0.00
328 7 0.00
329 5 0.00
330 3 0.00
332 6 0.00
333 5 0.00
334 2 0.00
335 4 0.00
336 8 0.00
337 4 0.00
338 2 0.00
339 4 0.00
340 4 0.00
341 5 0.00
342 4 0.00
344 3 0.00
345 10 0.00
346 5 0.00
347 1 0.00
348 1 0.00
349 1 0.00
350 3 0.00
351 4 0.00
353 3 0.00
354 4 0.00
355 14 0.01
356 61 0.02
357 71 0.03
358 10 0.00
359 5 0.00
ACGTcount: A:0.32, C:0.17, G:0.14, T:0.36
Consensus pattern (318 bp):
ATCTTCATTCTTTCCATGATTAGGCAACCAAAACACATTCTCCTGATTTGGATACAAGATATTAA
TGCTTTGATTTCATAAGAAAAGTTTTTTTCTCAATCGTTTTCCTTATAAAAAAAGTTTATACTTT
AAATGAGACAAACATAGATCTACGAAAAAATCACCATTCTTTCAATGATTGGGCACCATAAACAC
GTTATCTTCGTTGGGATGCACAATATTGACGCATTGGTTTTGCAAGAAAAGGTTTTCTTGCCATG
ATTTTCCTTATATTTTGAGTTCATATGTTAAATGAAGCAAACATGGATTCTTATAATA
Found at i:1354128 original size:198 final size:197
Alignment explanation
Indices: 1353756--1354139 Score: 567
Period size: 198 Copynumber: 1.9 Consensus size: 197
1353746 ACACTTATCT
* * *
1353756 TGATTAGGCAACCAAAACACATTCTCCTTTTTGGGATATATGATATTAATGCTATGATTTCATGA
1 TGATTAGGCAAACAAAACACATTCTCCTTTTTGGGATACACGATATTAATGCTATGATTTCATGA
* * * *
1353821 GAAAAGTTTTTTCTCTACCATTTTCCTTAGAATAAAAGCTTATACTTTGAATGAGACAAACATGG
66 GAAAAGTTTTTTCTCAACCATTTTCCATACAATAAAAGCTTATACTTTGAATGACACAAACATGG
*
1353886 ATCTACGAAAAAATCTCCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTCTTTC
131 ATCTACGAAAAAATCACCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTCTTTC
1353951 CA
196 CA
** * *
1353953 TGATTAGGCAAACAAAATGCGTTCTCCTTATTT-GGATACACGATATTAATGCTTTGATTTCATG
1 TGATTAGGCAAACAAAACACATTCTCCTT-TTTGGGATACACGATATTAATGCTATGATTTCATG
* * *
1354017 AGAAAAGTTTTTTTCTCAACCGTTTTCCATACAATTAAAGTTTATACTTT-ACATGACACAAACA
65 AGAAAAG-TTTTTTCTCAACCATTTTCCATACAATAAAAGCTTATACTTTGA-ATGACACAAACA
*
1354081 TGGATCTAC-AAAAAAGTCACTATTCTTTCAATGATTGGGCACCATAAACACGTTATCTT
128 TGGATCTACGAAAAAA-TCACCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTT
1354140 TGTTGGGATG
Statistics
Matches: 167, Mismatches: 16, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
197 67 0.40
198 100 0.60
ACGTcount: A:0.33, C:0.18, G:0.13, T:0.35
Consensus pattern (197 bp):
TGATTAGGCAAACAAAACACATTCTCCTTTTTGGGATACACGATATTAATGCTATGATTTCATGA
GAAAAGTTTTTTCTCAACCATTTTCCATACAATAAAAGCTTATACTTTGAATGACACAAACATGG
ATCTACGAAAAAATCACCATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTCTTTC
CA
Found at i:1354709 original size:833 final size:833
Alignment explanation
Indices: 1353104--1354778 Score: 2757
Period size: 833 Copynumber: 2.0 Consensus size: 833
1353094 TCTTATAATA
*
1353104 ATCTTCATTCTTTCCATGATTAGGCAACCAAAACACATTCTCCTGATTTGGATACAAGATATTAA
1 ATCTTCATTCTTTCCATGATTAGGCAAACAAAACACATTCTCCTGATTTGGATACAAGATATTAA
* * *
1353169 TGCTTTGATTTCATAAGAAAAGTTTTTTTCTCAATCGTTTTCCTTATAAAAAAAGTTTATACTTT
66 TGCTTTGATTTCATAAGAAAAGTTTTTTTCTCAACCGTTTTCCATACAAAAAAAGTTTATACTTT
1353234 AAATGAGCCAAACATAGATCTACGAAAAAATCACCATTCTTTCAATGATTGGGCACCATAAACAC
131 AAATGAGCCAAACATAGATCTACGAAAAAATCACCATTCTTTCAATGATTGGGCACCATAAACAC
* * *
1353299 GTTATCTTCGTTGGGATGCACAATATTGACGCATTGGTTTTGTAAGAAAAGGTTTTCTTGCCATG
196 GTTATCTTCGTTGGGATGCACAATATTGACACATTGGTTTTGCAAGAAAAGGTTTTCTTACCATG
* *
1353364 ATTTTCCTTATATTTTGAGTTCATATGTTAAATGAAGCAAACATGGATTCTTATAATAATCTTCA
261 ATTTTCCTAATATTTTGAGTTCATATGTTAAATGAAACAAACATGGATTCTTATAATAATCTTCA
* *
1353429 TTCTTTCCATGATTAGGCAACCAAAACACATTCTCCTGATTTGGATACAGGATATTAATGCTTTG
326 TTCTTTCCACGATTAGGCAACCAAAACACATTCTCCTGATTTGGATACAGGATATTAATCCTTTG
* *
1353494 ATTTCCTAAGGAAAGTTTTTTTCCCAATCGTTTTCCTTACAATCAAAGTTTAAATCTTAAATGAG
391 ATTTCCTAAGAAAAGTTTTTTTCCCAATCGTTTTCCTTACAATCAAAGTTTAAACCTTAAATGAG
* * *
1353559 ACAAACATGGATCTATGCAAAAATCTCCTTTCTTTCATTAGTTAGGCACCATAAACATGTTATCT
456 ACAAACATGGATCGATGCAAAAATCTCCTTTCTTTCAATAGTTAGGCACCATAAACACGTTATCT
* *
1353624 TCTTTGGGATGCACAGTATTGACGCATAGCTTATGCAAGAAAAGATTTTCTTGCCACGATTTTCC
521 TCTTTGGGAAGCACAGTATTGACGCATAGCTTACGCAAGAAAAGATTTTCTTGCCACGATTTTCC
* *
1353689 TTATAATTTGAGTTCGTATGTTAAATGAAACAAACATGGATTCTTATAAAAATCTTCACACTTAT
586 TTATAATTTGAGTTCGTATGTTAAATGAAACAAACACGGATTCTTATAAAAATATTCACACTTAT
* * *
1353754 CTTGATTAGGCAACCAAAACACATTCTCCTTTTTGGGATATATGATATTAATGCTATGATTTCAT
651 CATGATTAGGCAACCAAAACACATTCTCCTTTTTGGGATATACGAGATTAATGCTATGATTTCAT
* *
1353819 GAGAAAAGTTTTTTCTCTACCATTTTCCTTAGAATAAAAGCTTATACTTTGAATGAGACAAACAT
716 GAGAAAAGTTTTTTCTCTACCATTTCCCTTAGAATAAAAGCTTATACATTGAATGAGACAAACAT
1353884 GGATCTAC-GAAAAAATCTCCATTCTTTCAATGATTGGGCACCATAAACACGTT
781 GGATCTACAG-AAAAATCTCCATTCTTTCAATGATTGGGCACCATAAACACGTT
** * * *
1353937 ATCTTCATTCTTTCCATGATTAGGCAAACAAAATGCGTTCTCCTTATTTGGATACACGATATTAA
1 ATCTTCATTCTTTCCATGATTAGGCAAACAAAACACATTCTCCTGATTTGGATACAAGATATTAA
* **
1354002 TGCTTTGATTTCATGAGAAAAGTTTTTTTCTCAACCGTTTTCCATACAATTAAAGTTTATACTTT
66 TGCTTTGATTTCATAAGAAAAGTTTTTTTCTCAACCGTTTTCCATACAAAAAAAGTTTATACTTT
* * *
1354067 ACATGA-CACAAACATGGATCTAC-AAAAAAGTCACTATTCTTTCAATGATTGGGCACCATAAAC
131 AAATGAGC-CAAACATAGATCTACGAAAAAA-TCACCATTCTTTCAATGATTGGGCACCATAAAC
* *
1354130 ACGTTATCTTTGTTGGGATGCCCAATATTGACACATTGGTTTTGCAAGAAAAGGTTTTCTTACCA
194 ACGTTATCTTCGTTGGGATGCACAATATTGACACATTGGTTTTGCAAGAAAAGGTTTTCTTACCA
*
1354195 TGATTTTCCTAATATTTTGAGTTCGTATGTTAAATGAAACAAACATGGATTCTTATAATAATCTT
259 TGATTTTCCTAATATTTTGAGTTCATATGTTAAATGAAACAAACATGGATTCTTATAATAATCTT
1354260 CATTCTTTCCACGATTAGGCAACCAAAACACATTCTCCTGATTTGGATACAGGATATTAATCCTT
324 CATTCTTTCCACGATTAGGCAACCAAAACACATTCTCCTGATTTGGATACAGGATATTAATCCTT
* * **
1354325 TGATTTCGTAAGAAAAGTTTTTTTCTCAATCGTTTTCCTTGGAATCAAAGTTTAAACCTTAAATG
389 TGATTTCCTAAGAAAAGTTTTTTTCCCAATCGTTTTCCTTACAATCAAAGTTTAAACCTTAAATG
* * * * *
1354390 AGACAAACATGGATCGATGCAAAAATCTCGTTTCTTTCAATGGTTGGGCAGCATAAACCCGTTAT
454 AGACAAACATGGATCGATGCAAAAATCTCCTTTCTTTCAATAGTTAGGCACCATAAACACGTTAT
* *
1354455 CTTCTTTGGGAAGCATAGTATTGACGCATAGGTTACGCAAG-AAAGACTTTTCTTGCCACGATTT
519 CTTCTTTGGGAAGCACAGTATTGACGCATAGCTTACGCAAGAAAAGA-TTTTCTTGCCACGATTT
*
1354519 TCCTTATATTTTGAGTTCGTATGTTAAATGAAACAAACACGGATTCTTATAAAAATATTCACACT
583 TCCTTATAATTTGAGTTCGTATGTTAAATGAAACAAACACGGATTCTTATAAAAATATTCACACT
***
1354584 TATCATGATTAGGCATTGAAAACACATTCTCCTTTTTGGGATATACGAGATTAATGCT-TCGATT
648 TATCATGATTAGGCAACCAAAACACATTCTCCTTTTTGGGATATACGAGATTAATGCTAT-GATT
* *
1354648 TCATGAGAAAAGTTTTTTCTCTACCATTTCCCTTAGAATGAAAGCTTATCCATTGAATGAGACAA
712 TCATGAGAAAAGTTTTTTCTCTACCATTTCCCTTAGAATAAAAGCTTATACATTGAATGAGACAA
*
1354713 ACATGGATCTACAGAAAAATCTCCATTCTTTCAATGATTGGGCGCCATAAACACGTT
777 ACATGGATCTACAGAAAAATCTCCATTCTTTCAATGATTGGGCACCATAAACACGTT
1354770 ATCTTCATT
1 ATCTTCATT
1354779 AGGATGCACA
Statistics
Matches: 780, Mismatches: 57, Indels: 10
0.92 0.07 0.01
Matches are distributed among these distances:
832 13 0.02
833 766 0.98
834 1 0.00
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (833 bp):
ATCTTCATTCTTTCCATGATTAGGCAAACAAAACACATTCTCCTGATTTGGATACAAGATATTAA
TGCTTTGATTTCATAAGAAAAGTTTTTTTCTCAACCGTTTTCCATACAAAAAAAGTTTATACTTT
AAATGAGCCAAACATAGATCTACGAAAAAATCACCATTCTTTCAATGATTGGGCACCATAAACAC
GTTATCTTCGTTGGGATGCACAATATTGACACATTGGTTTTGCAAGAAAAGGTTTTCTTACCATG
ATTTTCCTAATATTTTGAGTTCATATGTTAAATGAAACAAACATGGATTCTTATAATAATCTTCA
TTCTTTCCACGATTAGGCAACCAAAACACATTCTCCTGATTTGGATACAGGATATTAATCCTTTG
ATTTCCTAAGAAAAGTTTTTTTCCCAATCGTTTTCCTTACAATCAAAGTTTAAACCTTAAATGAG
ACAAACATGGATCGATGCAAAAATCTCCTTTCTTTCAATAGTTAGGCACCATAAACACGTTATCT
TCTTTGGGAAGCACAGTATTGACGCATAGCTTACGCAAGAAAAGATTTTCTTGCCACGATTTTCC
TTATAATTTGAGTTCGTATGTTAAATGAAACAAACACGGATTCTTATAAAAATATTCACACTTAT
CATGATTAGGCAACCAAAACACATTCTCCTTTTTGGGATATACGAGATTAATGCTATGATTTCAT
GAGAAAAGTTTTTTCTCTACCATTTCCCTTAGAATAAAAGCTTATACATTGAATGAGACAAACAT
GGATCTACAGAAAAATCTCCATTCTTTCAATGATTGGGCACCATAAACACGTT
Found at i:1355333 original size:141 final size:140
Alignment explanation
Indices: 1355055--1355340 Score: 500
Period size: 141 Copynumber: 2.0 Consensus size: 140
1355045 AAAATCTCCC
* *
1355055 TTCTTTCAATGATTGGGCATCATAAACACGTTTTCTTCATTGGGATACACAAAATTGACGCATTG
1 TTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTGGGATACACAAAATTGACGCATTG
1355120 GTTTTCAAGAAAAGCTCTTCTTGCCATGATTTTCCTTATATTTTGAGTTCGTATCTTAAATGAAA
66 GTTTTCAAGAAAAGCTCTTCTTGCCATGATTTTCCTTATATTTTGAGTTCGTATCTTAAATGAAA
1355185 CAAACATGGA
131 CAAACATGGA
*
1355195 TTCTTTCAATGATTGGGCACCATAAACAGGTTATCTTCATTGGGATACACAAAATTGACGCATTG
1 TTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTGGGATACACAAAATTGACGCATTG
* *
1355260 GTTTTGCAAGAAAAGCTTTTCTTGCCATGATTTTCCTTATATTTTGAGTTCGTATGTTAAATGAA
66 GTTTT-CAAGAAAAGCTCTTCTTGCCATGATTTTCCTTATATTTTGAGTTCGTATCTTAAATGAA
**
1355325 ATGAACATGGA
130 ACAAACATGGA
1355336 TTCTT
1 TTCTT
1355341 ATAATAATCT
Statistics
Matches: 138, Mismatches: 7, Indels: 1
0.95 0.05 0.01
Matches are distributed among these distances:
140 67 0.49
141 71 0.51
ACGTcount: A:0.29, C:0.16, G:0.17, T:0.38
Consensus pattern (140 bp):
TTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTGGGATACACAAAATTGACGCATTG
GTTTTCAAGAAAAGCTCTTCTTGCCATGATTTTCCTTATATTTTGAGTTCGTATCTTAAATGAAA
CAAACATGGA
Found at i:1356611 original size:250 final size:249
Alignment explanation
Indices: 1356185--1356644 Score: 665
Period size: 250 Copynumber: 1.8 Consensus size: 249
1356175 ACATTATCTT
* * *
1356185 CTTTGGGATGCACAGTATTGATACATAGGTTATGCAAGAAAGGCTTTTCTTGCCACGATTTTCCT
1 CTTTGGGATGCACAGTATTGACACATAGGTTATGCAAGAAAGGCTTTTCTCGCCACGATTTTCCA
* * * * *
1356250 TAAATTTTGTGTTCGTATGTTAAATGAAACAAACATGGATTCTTACAATAATCTTCATTCTTTCT
66 TAAATTTTGAGTTCATATGTTAAATGAAACAAACATGGATTCTTACAAAAATCTTCATGCTTTCA
* * * *
1356315 ATGATTAGGTGACCAAAACACGTTCTCCTTATTTGGATACACGATATTATTACTTTGATTTGATA
131 ATGATTAGGTGACCAAAACACATTCTCCTTATTTGGATACACGATATCAATACTTTGATTTCATA
1356380 AGAAAAGTTTTCTTCTCAATCGTTTAATGATTAGGCACCACAAACATGCTACCTC
196 AGAAAAGTTTT-TTCTCAATCGTTTAATGATTAGGCACCACAAACATGCTACCTC
* *
1356435 CTTTGGGATGCACAGTATTGACGCATAGGTTATGCAAGAAAGGCTTTTCTCGCCATGATTTTCCA
1 CTTTGGGATGCACAGTATTGACACATAGGTTATGCAAGAAAGGCTTTTCTCGCCACGATTTTCCA
* * *
1356500 TATATTTTGAGTTCATATGTTAAATGAAACAAACATGGTTTCTTATAAAAATCTTCATGCTTAT-
66 TAAATTTTGAGTTCATATGTTAAATGAAACAAACATGGATTCTTACAAAAATCTTCATGCTT-TC
* * *
1356564 AATGATTAGG-GAACCAAGACACATTCTCCTT-TTTGGGATATACGATATCAATGCTTTGATTTC
130 AATGATTAGGTG-ACCAAAACACATTCTCCTTATTT-GGATACACGATATCAATACTTTGATTTC
* *
1356627 ATGAGAAATGTTTTTTCT
193 ATAAGAAAAGTTTTTTCT
1356645 TAACCATTTT
Statistics
Matches: 185, Mismatches: 22, Indels: 7
0.86 0.10 0.03
Matches are distributed among these distances:
249 8 0.04
250 176 0.95
251 1 0.01
ACGTcount: A:0.30, C:0.17, G:0.16, T:0.37
Consensus pattern (249 bp):
CTTTGGGATGCACAGTATTGACACATAGGTTATGCAAGAAAGGCTTTTCTCGCCACGATTTTCCA
TAAATTTTGAGTTCATATGTTAAATGAAACAAACATGGATTCTTACAAAAATCTTCATGCTTTCA
ATGATTAGGTGACCAAAACACATTCTCCTTATTTGGATACACGATATCAATACTTTGATTTCATA
AGAAAAGTTTTTTCTCAATCGTTTAATGATTAGGCACCACAAACATGCTACCTC
Found at i:1356878 original size:159 final size:157
Alignment explanation
Indices: 1356405--1357358 Score: 575
Period size: 158 Copynumber: 6.1 Consensus size: 157
1356395 TCAATCGTTT
* *** * * * * ** * * *
1356405 AATGATTAGGCACCACAAACATGCTACCTCCTTTGGGATGCACAGTATTGACGCATAGGTTATGC
1 AATGATTAGGCACCATAAACACATTATCTTCATTGGGATACACAAAATTGATGCATTGGTTTTGC
* * * * *
1356470 AAGAAAGGCTTTTCTCGCCATGATTTTCCATATATTTTGAGTTCATATGTTAAATGAAACAAACA
66 AAGAAAAGCTTTTCTTGCCATGATTTTCCTTATATATTGAGTTCGTATGTTAAATGAAACAAACA
* *
1356535 TGGTTTCTTATAAAAATCTTCATGCTTAT-
131 TGG-TTC-TATAATAATCTTCATTCTT-TC
* * * * * * * ** * *
1356564 AATGATTAGGGAACCA-AGACACATTCTCCTT-TTTGGGATATACGATATCAATGC-TTTGATTT
1 AATGATTA-GGCACCATAAACACATTAT-CTTCATTGGGATACACAAAATTGATGCATTGGTTTT
* * * * *
1356626 -CATGAGAAATGTTTTTTCTTAACC---ATTTTCCTTAGA-A-TGAAAGCTT-ATACT-TTAAAT
64 GCA--AGAAAAG-CTTTTCTT-GCCATGATTTTCCTTATATATTG--AG-TTCGTA-TGTTAAAT
* * * * * *
1356683 GAGACAAACATGGATCTACGAAAAAATCTCCTTTCTTTC
121 GAAACAAACATGGTTCTA--TAATAATCTTCATTCTTTC
**
1356722 AATGATTAGGCACCATAAACATGTTATCTTCATTGGGATACACAAAATTGATGCATTGGTTTTGC
1 AATGATTAGGCACCATAAACACATTATCTTCATTGGGATACACAAAATTGATGCATTGGTTTTGC
*
1356787 AAGAAAAGCTTTTCTTGCCATGATTTTCCTTATATATTGAGTTCGGATGTTAAATGAAACAAACA
66 AAGAAAAGCTTTTCTTGCCATGATTTTCCTTATATATTGAGTTCGTATGTTAAATGAAACAAACA
*
1356852 TGGATTCTTATAATAGTCTTCATTCTTTC
131 TGG-TTC-TATAATAATCTTCATTCTTTC
* * * * * * **
1356881 TATGATTAGGCAACCA-AAACACATTCTCCTT-TTTGGGATACACGATATTAATGC-TCT-AATT
1 AATGATTAGGC-ACCATAAACACATTAT-CTTCATTGGGATACACAAAATTGATGCAT-TGGTTT
* ** * ** **
1356942 TCCTAAGAAAAG-TTTT-TT-CTCTACCATTTTCCTTAGA-ATAAAAGTTTATACT-TTAAATGA
63 TGC-AAGAAAAGCTTTTCTTGC-C-ATGATTTTCCTTATATAT-TGAGTTCGTA-TGTTAAATGA
* * * *
1357002 GACAAACATGGGTCTATGAAAAAATCTCCATTCTTTC
123 AACAAACATGGTTCTAT--AATAATCTTCATTCTTTC
* * * * * *
1357039 AGTGATTGGGCCCCATAAACACATTATCTTCATT-GGATGCACAATA-TGAAGCATTGGTTTTGC
1 AATGATTAGGCACCATAAACACATTATCTTCATTGGGATACACAAAATTGATGCATTGGTTTTGC
* * * * * * *
1357102 AAGAAAAGCTCTCCTTGCCATGATTTTCCTCATATTTTGAGTTCGTATGTTAAATTAAACAAGCG
66 AAGAAAAGCTTTTCTTGCCATGATTTTCCTTATATATTGAGTTCGTATGTTAAATGAAACAAACA
1357167 TGG----------------ATTCTTTC
131 TGGTTCTATAATAATCTTCATTCTTTC
* ** *
1357178 AATGATTGGGCACCATAAACAGGTTATCTTCATTGGGATACACAAAATTGACGCATTGGTTTTGC
1 AATGATTAGGCACCATAAACACATTATCTTCATTGGGATACACAAAATTGATGCATTGGTTTTGC
* *
1357243 AAGAAAAGCTTTTCTTGCCATGATTTTCCTTATATTTTGAGTTCGTATGTTAAATGAAACGAACA
66 AAGAAAAGCTTTTCTTGCCATGATTTTCCTTATATATTGAGTTCGTATGTTAAATGAAACAAACA
1357308 TGGATTCTTATAATAATCTTCATTCTTTC
131 TGG-TTC-TATAATAATCTTCATTCTTTC
* *
1357337 CACGATTAGGCAACCA-AAACAC
1 AATGATTAGGC-ACCATAAACAC
1357359 GTTCTCCTGA
Statistics
Matches: 601, Mismatches: 128, Indels: 132
0.70 0.15 0.15
Matches are distributed among these distances:
139 38 0.06
140 10 0.02
141 77 0.13
156 24 0.04
157 83 0.14
158 174 0.29
159 159 0.26
160 30 0.05
161 6 0.01
ACGTcount: A:0.32, C:0.18, G:0.15, T:0.36
Consensus pattern (157 bp):
AATGATTAGGCACCATAAACACATTATCTTCATTGGGATACACAAAATTGATGCATTGGTTTTGC
AAGAAAAGCTTTTCTTGCCATGATTTTCCTTATATATTGAGTTCGTATGTTAAATGAAACAAACA
TGGTTCTATAATAATCTTCATTCTTTC
Found at i:1356922 original size:567 final size:567
Alignment explanation
Indices: 1355871--1356962 Score: 1447
Period size: 567 Copynumber: 1.9 Consensus size: 567
1355861 TATCTTCATC
* ** * * *
1355871 GGGATGCACAATATTGACGCATTGGTCAAGCCCGAAAAGCTTTTCTTACCACGATTTCTCTTTTA
1 GGGATGCACAATATTGACGCATAGGTCAAGCAAGAAAAGCTTTTCTCACCACGATTTCTCATATA
* * *
1355936 TTTTGAGTTCATATGTTAAATGAAACAAACATTGACTCTTATAAAAATCTTCATTATTTCCATGA
66 TTTTGAGTTCATATGTTAAATGAAACAAACATGGACTCTTATAAAAATCTTCATGATTTCAATGA
* *
1356001 TCAGGCAAGCAAAACACAATCTCCATTTTGGGATACACAATATTAATGCTTTGATTTCATAAGAA
131 TCAGGCAACCAAAACACAATCTCCATTTTGGGATACACAATATCAATGCTTTGATTTCATAAGAA
* * * *
1356066 AAGTTTTTTTCTCCACCGTTTTCCATAGAATCGAAGTTTAAACCTTAAATAAGATAAAAATGGAT
196 AAGTTTTTTTCTCAACCATTTTCCATAGAATCGAAGCTTAAACCTTAAATAAGACAAAAATGGAT
* * * * ** * *
1356131 CTATGCAAAAATCTTCATCCTTTCAATGATTGGGTGCCATAAACACATTATCTTCTTTGGGATGC
261 CTACGAAAAAATCTCCATCCTTTCAATGATTAGGCACCATAAACACATTATCTTCATTGGGATAC
** * * *
1356196 ACAGTATTGATACATAGGTTATGCAAGAAAGGCTTTTCTTGCCACGATTTTCCTTAAATTTTGTG
326 ACAAAATTGATACATAGGTTATGCAAGAAAAGCTTTTCTTGCCACGATTTTCCTTAAATATTGAG
* **
1356261 TTCGTATGTTAAATGAAACAAACATGGATTCTTACAATAATCTTCATTCTTTCTATGATTAGGTG
391 TTCGGATGTTAAATGAAACAAACATGGATTCTTACAATAATCTTCATTCTTTCTATGATTAGGCA
* * * * *
1356326 ACCAAAACACGTTCTCCTTATTTGGATACACGATATTATTACTTTGATTTGATAAGAAAAGTTTT
456 ACCAAAACACATTCTCCTTATTTGGATACACGATATTAATACTCTAATTTCATAAGAAAAGTTTT
1356391 CTTCTCAATCGTTTAATGATTAGGCACCACAAACATGCTACCTCCTTT
521 -TTCTCAATCGTTTAATGATTAGGCACCACAAACATGCTACCTCCTTT
* * * * * *
1356439 GGGATGCACAGTATTGACGCATAGGTTATGCAAGAAAGGCTTTTCTCGCCATGATTT-TCCATAT
1 GGGATGCACAATATTGACGCATAGGTCAAGCAAGAAAAGCTTTTCTCACCACGATTTCT-CATAT
** *
1356503 ATTTTGAGTTCATATGTTAAATGAAACAAACATGGTTTCTTATAAAAATCTTCATGCTTAT-AAT
65 ATTTTGAGTTCATATGTTAAATGAAACAAACATGGACTCTTATAAAAATCTTCATGATT-TCAAT
* * * * * * * *
1356567 GATTAGGGAACCAAGACACATTCTCCTTTTTGGGATATACGATATCAATGCTTTGATTTCATGAG
129 GATCAGGCAACCAAAACACAATCTCCATTTTGGGATACACAATATCAATGCTTTGATTTCATAAG
* * * * * * *
1356632 AAATG-TTTTTTCTTAACCATTTTCCTTAGAAT-GAAAGCTTATACTTTAAATGAGACAAACATG
194 AAAAGTTTTTTTCTCAACCATTTTCCATAGAATCG-AAGCTTAAACCTTAAATAAGACAAAAATG
* * **
1356695 GATCTACGAAAAAATCTCCTTTCTTTCAATGATTAGGCACCATAAACATGTTATCTTCATTGGGA
258 GATCTACGAAAAAATCTCCATCCTTTCAATGATTAGGCACCATAAACACATTATCTTCATTGGGA
* * * * *
1356760 TACACAAAATTGATGCATTGGTTTTGCAAGAAAAGCTTTTCTTGCCATGATTTTCCTTATATATT
323 TACACAAAATTGATACATAGGTTATGCAAGAAAAGCTTTTCTTGCCACGATTTTCCTTAAATATT
* *
1356825 GAGTTCGGATGTTAAATGAAACAAACATGGATTCTTATAATAGTCTTCATTCTTTCTATGATTAG
388 GAGTTCGGATGTTAAATGAAACAAACATGGATTCTTACAATAATCTTCATTCTTTCTATGATTAG
* *
1356890 GCAACCAAAACACATTCTCCTT-TTTGGGATACACGATATTAATGCTCTAATTTCCTAAGAAAAG
453 GCAACCAAAACACATTCTCCTTATTT-GGATACACGATATTAATACTCTAATTTCATAAGAAAAG
1356954 TTTTTTCTC
517 TTTTTTCTC
1356963 TACCATTTTC
Statistics
Matches: 447, Mismatches: 73, Indels: 10
0.84 0.14 0.02
Matches are distributed among these distances:
566 9 0.02
567 272 0.61
568 165 0.37
569 1 0.00
ACGTcount: A:0.32, C:0.17, G:0.14, T:0.36
Consensus pattern (567 bp):
GGGATGCACAATATTGACGCATAGGTCAAGCAAGAAAAGCTTTTCTCACCACGATTTCTCATATA
TTTTGAGTTCATATGTTAAATGAAACAAACATGGACTCTTATAAAAATCTTCATGATTTCAATGA
TCAGGCAACCAAAACACAATCTCCATTTTGGGATACACAATATCAATGCTTTGATTTCATAAGAA
AAGTTTTTTTCTCAACCATTTTCCATAGAATCGAAGCTTAAACCTTAAATAAGACAAAAATGGAT
CTACGAAAAAATCTCCATCCTTTCAATGATTAGGCACCATAAACACATTATCTTCATTGGGATAC
ACAAAATTGATACATAGGTTATGCAAGAAAAGCTTTTCTTGCCACGATTTTCCTTAAATATTGAG
TTCGGATGTTAAATGAAACAAACATGGATTCTTACAATAATCTTCATTCTTTCTATGATTAGGCA
ACCAAAACACATTCTCCTTATTTGGATACACGATATTAATACTCTAATTTCATAAGAAAAGTTTT
TTCTCAATCGTTTAATGATTAGGCACCACAAACATGCTACCTCCTTT
Found at i:1356980 original size:317 final size:317
Alignment explanation
Indices: 1356405--1357175 Score: 974
Period size: 317 Copynumber: 2.4 Consensus size: 317
1356395 TCAATCGTTT
* * * * * * * ** * *
1356405 AATGATTAGGCACCACAAACATGCTACCTCCTTTGGGATGCACAGTATTGACGCATAGGTTATGC
1 AATGATTGGGCACCATAAACACGTTATCTTCATTGGGATGCACAAAATTGACGCATTGGTTTTGC
* * * * *
1356470 AAGAAAGGCTTTTCTCGCCATGATTTTCCATATATTTTGAGTTCATATGTTAAATGAAACAAACA
66 AAGAAAAGCTTTTCTTGCCATGATTTTCCTTATATTTTGAGTTCGTATGTTAGATGAAACAAACA
* * * * * * *
1356535 TGGTTTCTTATAAAAATCTTCATGCTTAT-AATGATTAGGGAACCAAGACACATTCTCCTTTTTG
131 TGGATTCTTATAACAATCTTCATTCTT-TCCATGATTAGGCAAACAAAACACATTCTCCTTTTTG
* * *
1356599 GGATATACGATATCAATGCTTTGATTTCATGAGAAATGTTTTTTCT-TAACCATTTTCCTTAGAA
195 GGATACACGATATTAATGCTTTGATTTCATGAGAAAAGTTTTTTCTCT-ACCATTTTCCTTAGAA
* * *
1356663 TGAAAGCTTATACTTTAAATGAGACAAACATGGATCTACGAAAAAATCTCCTTTCTTTC
259 TAAAAGTTTATACTTTAAATGAGACAAACATGGATCTACGAAAAAATCTCCATTCTTTC
* * * *
1356722 AATGATTAGGCACCATAAACATGTTATCTTCATTGGGATACACAAAATTGATGCATTGGTTTTGC
1 AATGATTGGGCACCATAAACACGTTATCTTCATTGGGATGCACAAAATTGACGCATTGGTTTTGC
* * *
1356787 AAGAAAAGCTTTTCTTGCCATGATTTTCCTTATATATTGAGTTCGGATGTTAAATGAAACAAACA
66 AAGAAAAGCTTTTCTTGCCATGATTTTCCTTATATTTTGAGTTCGTATGTTAGATGAAACAAACA
* * * *
1356852 TGGATTCTTATAATAGTCTTCATTCTTTCTATGATTAGGCAACCAAAACACATTCTCCTTTTTGG
131 TGGATTCTTATAACAATCTTCATTCTTTCCATGATTAGGCAAACAAAACACATTCTCCTTTTTGG
* * * *
1356917 GATACACGATATTAATGCTCTAATTTCCTAAGAAAAGTTTTTTCTCTACCATTTTCCTTAGAATA
196 GATACACGATATTAATGCTTTGATTTCATGAGAAAAGTTTTTTCTCTACCATTTTCCTTAGAATA
* *
1356982 AAAGTTTATACTTTAAATGAGACAAACATGGGTCTATGAAAAAATCTCCATTCTTTC
261 AAAGTTTATACTTTAAATGAGACAAACATGGATCTACGAAAAAATCTCCATTCTTTC
* * * * *
1357039 AGTGATTGGGCCCCATAAACACATTATCTTCATT-GGATGCACAATA-TGAAGCATTGGTTTTGC
1 AATGATTGGGCACCATAAACACGTTATCTTCATTGGGATGCACAAAATTGACGCATTGGTTTTGC
* * * * * * *
1357102 AAGAAAAGCTCTCCTTGCCATGATTTTCCTCATATTTTGAGTTCGTATGTTAAATTAAACAAGCG
66 AAGAAAAGCTTTTCTTGCCATGATTTTCCTTATATTTTGAGTTCGTATGTTAGATGAAACAAACA
1357167 TGGATTCTT
131 TGGATTCTT
1357176 TCAATGATTG
Statistics
Matches: 400, Mismatches: 52, Indels: 6
0.87 0.11 0.01
Matches are distributed among these distances:
315 82 0.20
316 11 0.03
317 306 0.76
318 1 0.00
ACGTcount: A:0.32, C:0.17, G:0.15, T:0.36
Consensus pattern (317 bp):
AATGATTGGGCACCATAAACACGTTATCTTCATTGGGATGCACAAAATTGACGCATTGGTTTTGC
AAGAAAAGCTTTTCTTGCCATGATTTTCCTTATATTTTGAGTTCGTATGTTAGATGAAACAAACA
TGGATTCTTATAACAATCTTCATTCTTTCCATGATTAGGCAAACAAAACACATTCTCCTTTTTGG
GATACACGATATTAATGCTTTGATTTCATGAGAAAAGTTTTTTCTCTACCATTTTCCTTAGAATA
AAAGTTTATACTTTAAATGAGACAAACATGGATCTACGAAAAAATCTCCATTCTTTC
Found at i:1357283 original size:141 final size:139
Alignment explanation
Indices: 1357031--1357316 Score: 430
Period size: 141 Copynumber: 2.0 Consensus size: 139
1357021 AAAAATCTCC
* * * *
1357031 ATTCTTTCAGTGATTGGGCCCCATAAACACATTATCTTCATTGGATGCACAATATGAAGCATTGG
1 ATTCTTTCAATGATTGGGCACCATAAACACATTATCTTCATTGGATACACAAAATGAAGCATTGG
*
1357096 TTTTGCAAGAAAAGCTCTCCTTGCCATGATTTTCCTCATATTTTGAGTTCGTATGTTAAATTAAA
66 TTTTGCAAGAAAAGCTCTCCTTGCCATGATTTTCCTCATATTTTGAGTTCGTATGTTAAATGAAA
*
1357161 C-AAGCGTGG
131 CGAA-CATGG
** *
1357170 ATTCTTTCAATGATTGGGCACCATAAACAGGTTATCTTCATTGGGATACACAAAATTGACGCATT
1 ATTCTTTCAATGATTGGGCACCATAAACACATTATCTTCATT-GGATACACAAAA-TGAAGCATT
* * *
1357235 GGTTTTGCAAGAAAAGCTTTTCTTGCCATGATTTTCCTTATATTTTGAGTTCGTATGTTAAATGA
64 GGTTTTGCAAGAAAAGCTCTCCTTGCCATGATTTTCCTCATATTTTGAGTTCGTATGTTAAATGA
1357300 AACGAACATGG
129 AACGAACATGG
1357311 ATTCTT
1 ATTCTT
1357317 ATAATAATCT
Statistics
Matches: 132, Mismatches: 12, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
139 38 0.29
140 10 0.08
141 82 0.62
142 2 0.02
ACGTcount: A:0.29, C:0.17, G:0.18, T:0.36
Consensus pattern (139 bp):
ATTCTTTCAATGATTGGGCACCATAAACACATTATCTTCATTGGATACACAAAATGAAGCATTGG
TTTTGCAAGAAAAGCTCTCCTTGCCATGATTTTCCTCATATTTTGAGTTCGTATGTTAAATGAAA
CGAACATGG
Found at i:1357625 original size:250 final size:250
Alignment explanation
Indices: 1357178--1357665 Score: 678
Period size: 250 Copynumber: 2.0 Consensus size: 250
1357168 GGATTCTTTC
* * * * *
1357178 AATGATTGGGCACCATAAACAGGTTATCTTCATTGGGATACACAAAATTGACGCATTGGTTTTGC
1 AATGATTAGGCACCATAAACAGCTTACCTTCATTGGGATACACAAAATTGACGCATAGGTTATGC
* * *
1357243 AAGAAAAGCTTTTCTTGCCATGATTTTCCTTATATTTTGAGTTCGTATGTTAAATGAAACGAACA
66 AAGAAAAGCTTTTCTTGCCACGATTTTCCTTATATTTTGAGTTCATATGTTAAATGAAACAAACA
* * * *
1357308 TGGATTCTTATAATAATCTTCATTCTTTCCACGATTAGGCAACCAAAACACGTTCTCCTGATTTG
131 TGGATTCTTATAATAATCTCCATACTTTCCACGATTAGGCAACCAAAACACATCCTCCTGATTTG
* *
1357373 GATACAGGATA-TTATCGCTTTGATTTCATAAGAAATGCTTTTTTCTCAATTGTTT
196 GATACAGGATACTAAT-GCTTTGATTTCATAAGAAAAGCTTTTTTCTCAATTGTTT
* * *
1357428 AATGATTAGGCACCATAAACA-CTCTACCTTCTTTGGGATGCACAATATTGACGCATAGGTTATG
1 AATGATTAGGCACCATAAACAGCT-TACCTTCATTGGGATACACAAAATTGACGCATAGGTTATG
* * *
1357492 GAAGGAAGGCTTTTCTTGCCACGATTTTCCTTATATTTTGAGTTCATATGTTAAATGAAACAAAC
65 CAAGAAAAGCTTTTCTTGCCACGATTTTCCTTATATTTTGAGTTCATATGTTAAATGAAACAAAC
* * *
1357557 ATGGTTTCTTATAATAATCTCCATACTTAT-CATGATTAGGCAACCAAAACACATCCT-CTGTTT
130 ATGGATTCTTATAATAATCTCCATACTT-TCCACGATTAGGCAACCAAAACACATCCTCCTG-AT
* * *
1357620 TTGGATATATGATACTAATGCTTTGATTTCATGAGAAAAGCTTTTT
193 TTGGATACAGGATACTAATGCTTTGATTTCATAAGAAAAGCTTTTT
1357666 CTCTACCATT
Statistics
Matches: 208, Mismatches: 26, Indels: 8
0.86 0.11 0.03
Matches are distributed among these distances:
249 4 0.02
250 200 0.96
251 4 0.02
ACGTcount: A:0.30, C:0.17, G:0.16, T:0.37
Consensus pattern (250 bp):
AATGATTAGGCACCATAAACAGCTTACCTTCATTGGGATACACAAAATTGACGCATAGGTTATGC
AAGAAAAGCTTTTCTTGCCACGATTTTCCTTATATTTTGAGTTCATATGTTAAATGAAACAAACA
TGGATTCTTATAATAATCTCCATACTTTCCACGATTAGGCAACCAAAACACATCCTCCTGATTTG
GATACAGGATACTAATGCTTTGATTTCATAAGAAAAGCTTTTTTCTCAATTGTTT
Found at i:1358003 original size:317 final size:317
Alignment explanation
Indices: 1357428--1375660 Score: 19285
Period size: 317 Copynumber: 57.4 Consensus size: 317
1357418 TCAATTGTTT
* * * * * *
1357428 AATGATTAGGCACCATAAACAC-TCTACCTTCTTTGGGATGCACAATATTGACGCATAGGTTATG
1 AATGATTGGGCACCATAAACACGT-TATCTTCATTGGGATGCACAAAATTGACGCATTGGTTTTG
* * * * * *
1357492 GAAGGAAGGCTTTTCTTGCCACGATTTTCCTTATATTTTGAGTTCATATGTTAAATGAAACAAAC
65 CAAGAAAAGCTTTTCTTGCCATGATTTTCCTTATATTTTGAGTTCGTATGTTAGATGAAACAAAC
* * * * * *
1357557 ATGGTTTCTTATAATAATCTCCATACTTATC-ATGATTAGGCAACCAAAACACATCCT-CTGTTT
130 ATGGATTCTTATAACAATCTTCATTCTT-TCTATGATTAGGCAAACAAAACACATTCTCCT-TTT
* * * * *
1357620 TTGGATATATGATACTAATGCTTTGATTTCATGAGAAAAGCTTTTTCTCTACCATTTTCCTTAGA
193 TGGGATACACGATATTAATGCTTTGATTTCATGAGAAAAGTTTTTTCTCTACCATTTTCCTTAGA
* * *
1357685 ATGAAAGCTTATACGTTAAATGAGACAAACATGGATCTACGAAAAAATCTCCATTCTTTC
258 ATAAAAGTTTATACTTTAAATGAGACAAACATGGATCTACGAAAAAATCTCCATTCTTTC
* *
1357745 AATGATTGGGCACCATAAACATGTTATCTTCATTGGGATGCACAAAATTGACGCATTGGCTTTGC
1 AATGATTGGGCACCATAAACACGTTATCTTCATTGGGATGCACAAAATTGACGCATTGGTTTTGC
* * * *
1357810 AAGAAAAGCTTTTCTTGCCATGATTTTCCCTATATTTTGCGTTCGTATGTTAAATGAAACAAAAA
66 AAGAAAAGCTTTTCTTGCCATGATTTTCCTTATATTTTGAGTTCGTATGTTAGATGAAACAAACA
* * * * * * *
1357875 AGGATTCTTATAATAGTTTTCATTCTTTCTACGACTAGGC-AACTGAAACACATTCTCCTTTTTG
131 TGGATTCTTATAACAATCTTCATTCTTTCTATGATTAGGCAAAC-AAAACACATTCTCCTTTTTG
* *
1357939 GGATACACGATATTAATGCTTTGATTTCCTAAGAAAAGTTTTTTCTCTACCATTTTCCTTAGAAT
195 GGATACACGATATTAATGCTTTGATTTCATGAGAAAAGTTTTTTCTCTACCATTTTCCTTAGAAT
* * *
1358004 AAAAGTTTTTACTTTAAATGAGACAAACAAGGATCTACAAAAAAATCTCCATTCTTTC
260 AAAAGTTTATACTTTAAATGAGACAAACATGGATCTACGAAAAAATCTCCATTCTTTC
* * *
1358062 AGTGATTGGGCGCCATAAACACGTTATCTTCATTGGGATGCACAATATTGACG-ATTTGGTTTTG
1 AATGATTGGGCACCATAAACACGTTATCTTCATTGGGATGCACAAAATTGACGCA-TTGGTTTTG
* * * *
1358126 CAAGAAAAGCTTTCCTTGCCATGATTTTCCTCATATTTTAAGTTCGTACGTTAGATGAAACAAAC
65 CAAGAAAAGCTTTTCTTGCCATGATTTTCCTTATATTTTGAGTTCGTATGTTAGATGAAACAAAC
* * * * * *
1358191 ATGGATTCTTATAACAATGTTCATTCTTTCCATGCTTAGGCAAACAAAGCAAATTGTCCTTTTTG
130 ATGGATTCTTATAACAATCTTCATTCTTTCTATGATTAGGCAAACAAAACACATTCTCCTTTTTG
* * *
1358256 GGATACACGATATAAATGCTTTGATTTCATGAGAAAAGGTTTTTCTCTACCATTTTCCTTTGAAT
195 GGATACACGATATTAATGCTTTGATTTCATGAGAAAAGTTTTTTCTCTACCATTTTCCTTAGAAT
1358321 AAAAGTTTATACTTTAAATGAGACAAACATGGATCTACGAAAAAATCTCCATTCTTTC
260 AAAAGTTTATACTTTAAATGAGACAAACATGGATCTACGAAAAAATCTCCATTCTTTC
* * * *
1358379 AATGATTAGGCACCACAAACACGTTATCTTCATTGGGATGCACAATATTGACGCATTGGTTTCGC
1 AATGATTGGGCACCATAAACACGTTATCTTCATTGGGATGCACAAAATTGACGCATTGGTTTTGC
* ** * * * * *
1358444 AAGAAAAGCTTTCCTTGCCACAATTTTCCTCATATTTTGAGTTTGTATGTTAAATGAACCAAGCA
66 AAGAAAAGCTTTTCTTGCCATGATTTTCCTTATATTTTGAGTTCGTATGTTAGATGAAACAAACA
* * * * *** *
1358509 TGGATTCTTGTAACAATCTTCATTCTTTCCATGATTACGCAACCAAAACGTGTACTCCTTATTT-
131 TGGATTCTTATAACAATCTTCATTCTTTCTATGATTAGGCAAACAAAACACATTCTCCTT-TTTG
* * *
1358573 GGATACACGATATTAATGCTTTGATTTCATAAGAAAAGTTTTTT-TCTTAATCGTTTTCCTTAGA
195 GGATACACGATATTAATGCTTTGATTTCATGAGAAAAGTTTTTTCTC-T-ACCATTTTCCTTAGA
* *
1358637 ATAAAAGTTTATACTTTAAATGAGACAAACATGGATCTAC-AAAAACTCACCATTCTTTC
258 ATAAAAGTTTATACTTTAAATGAGACAAACATGGATCTACGAAAAAATCTCCATTCTTTC
* * * * * *
1358696 AATTATTGGCCACCAAAAACACGTTATCTTCATTGGGACGCACAAAATTGACGCGTTGGTTTTAC
1 AATGATTGGGCACCATAAACACGTTATCTTCATTGGGATGCACAAAATTGACGCATTGGTTTT-G
* ** ** * *
1358761 CAA-AAAACCTTTTCTTGCCATGATTTTCCTTATATTTTCCGTTTATTTGTTAAATGAAACAAAC
65 CAAGAAAAGCTTTTCTTGCCATGATTTTCCTTATATTTTGAGTTCGTATGTTAGATGAAACAAAC
* * * * *
1358825 AAGGATTCTTATAATAGA-CTTCGTTCTTTCTACGATTAGGCAACCAAAACACATTCTCCTTTTT
130 ATGGATTCTTATAACA-ATCTTCATTCTTTCTATGATTAGGCAAACAAAACACATTCTCCTTTTT
* * *
1358889 GGGATACACGATATTAATGCTTTGATTTCCTAAGAAAAGTTTTTTCTCCACCATTTTCCTTAGAA
194 GGGATACACGATATTAATGCTTTGATTTCATGAGAAAAGTTTTTTCTCTACCATTTTCCTTAGAA
*
1358954 TAAAAGTTTTTACTTTAAATGAGACAAACATGGATCTACGAAAAAATCTCCATTCTTTC
259 TAAAAGTTTATACTTTAAATGAGACAAACATGGATCTACGAAAAAATCTCCATTCTTTC
* * *
1359013 AGTGATTGGGCACCATAAACACGTTATCTTCATTTGGATGCACAATATTGACG-ATTTGGTTTTG
1 AATGATTGGGCACCATAAACACGTTATCTTCATTGGGATGCACAAAATTGACGCA-TTGGTTTTG
* * * * *
1359077 CAAGAAAAGCTTTCCTTGCCATGATTTTCCTCATATTTTGAGTTCGTATGCTAAATGAAACAAGC
65 CAAGAAAAGCTTTTCTTGCCATGATTTTCCTTATATTTTGAGTTCGTATGTTAGATGAAACAAAC
* * * * * * * *
1359142 AGGGATTCTTATAATAACCCTCATTCTTTCCATGATTAGGCAACCAAAACGCGTTCTCCTTATTT
130 ATGGATTCTTATAACAATCTTCATTCTTTCTATGATTAGGCAAACAAAACACATTCTCCTT-TTT
* * * * *
1359207 -GGATACACGATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTTCTCAATCGTTTTCCTCAGA
194 GGGATACACGATATTAATGCTTTGATTTCATGAGAAAAG-TTTTTTCTCTACCATTTTCCTTAGA
* * *
1359271 ATAAAAGTTTCTACTTTAAATGAAACAAACATAGATCTACGAAAAAATCTCCATTCTTTC
258 ATAAAAGTTTATACTTTAAATGAGACAAACATGGATCTACGAAAAAATCTCCATTCTTTC
* * * * * * *
1359331 AATGATTGGGCACCATAAACCCATAATCTTCATTGGAATACAAAAAATTGACGCATTGGTATTGC
1 AATGATTGGGCACCATAAACACGTTATCTTCATTGGGATGCACAAAATTGACGCATTGGTTTTGC
*
1359396 AAGAAAAGCTCTTCTTGCCATGATTTTCCTTATATTTTGAGTTCGTATGTTAGATGAAACAAACA
66 AAGAAAAGCTTTTCTTGCCATGATTTTCCTTATATTTTGAGTTCGTATGTTAGATGAAACAAACA
* * *
1359461 TGGATTCTTATAACAATCTTCATTCTTTCCATGATTAGGCAAACAAAACAAATTCTCATTTTTGG
131 TGGATTCTTATAACAATCTTCATTCTTTCTATGATTAGGCAAACAAAACACATTCTCCTTTTTGG
* * * * ** * *
1359526 GATACACCATATAAATTCTTTCATTTCGCGAGAAAAGTTTTTTCTCCACCATTTTCCTTTGAATA
196 GATACACGATATTAATGCTTTGATTTCATGAGAAAAGTTTTTTCTCTACCATTTTCCTTAGAATA
*
1359591 AAAGTTTATACTTTAAATGAGACAAATATGGATCTACG-AAAAATCTCCATTCTTTC
261 AAAGTTTATACTTTAAATGAGACAAACATGGATCTACGAAAAAATCTCCATTCTTTC
* ** * *
1359647 AATGATTGGGCACCACAAACACGTTATCTTCATTGGGATGCACAATCTTGATGCATTGGTTTCGC
1 AATGATTGGGCACCATAAACACGTTATCTTCATTGGGATGCACAAAATTGACGCATTGGTTTTGC
* * * * * *
1359712 AAGAAAAGCTTTCCTTGCCATGAATTTCCTCATATTTTGAGTTCGTATGTTAAATTAAACAAGCA
66 AAGAAAAGCTTTTCTTGCCATGATTTTCCTTATATTTTGAGTTCGTATGTTAGATGAAACAAACA
* * * * * ** *
1359777 TAGATTCTTATAATAATCTTCATTCTTTCCATGATTACGCAACCAAAACAGGTACTCCTTATTT-
131 TGGATTCTTATAACAATCTTCATTCTTTCTATGATTAGGCAAACAAAACACATTCTCCTT-TTTG
* * * * * *
1359841 GGATACACGATATTAATGCTTTAATTTCATAAGAAAAGTTTTTTTCTCAATCGTTTTCCTCAGAA
195 GGATACACGATATTAATGCTTTGATTTCATGAGAAAAG-TTTTTTCTCTACCATTTTCCTTAGAA
* *
1359906 TAAAAGTTTATACTTTAAATGAAACAAACATGGATCTACG-AAAAATCTCCATTTTTTC
259 TAAAAGTTTATACTTTAAATGAGACAAACATGGATCTACGAAAAAATCTCCATTCTTTC
* * * *
1359964 AATGATTGGGCACCATAAACACGCTATCTTTATTGGGATACACAAAATTGACGCATTGGTTTTAC
1 AATGATTGGGCACCATAAACACGTTATCTTCATTGGGATGCACAAAATTGACGCATTGGTTTTGC
*
1360029 AAGAAAAGCTCTTCTTGCCATGATTTTCCTTATA-TTTGAGTTCGTATGTTAGATGAAACAAACA
66 AAGAAAAGCTTTTCTTGCCATGATTTTCCTTATATTTTGAGTTCGTATGTTAGATGAAACAAACA
1360093 TGGATTCTTATAACAATCTTCATTCTTTCCT-TGATTAGGCAAACAAAACACATTCTCCTTTTTG
131 TGGATTCTTATAACAATCTTCATTCTTT-CTATGATTAGGCAAACAAAACACATTCTCCTTTTTG
* * * * * *
1360157 GGATACGCGATATTAACGCTTTGATCTCATTAGAAAAGTTTTTTCTCTACCATTTTCCTCAAAAT
195 GGATACACGATATTAATGCTTTGATTTCATGAGAAAAGTTTTTTCTCTACCATTTTCCTTAGAAT
* * *
1360222 AAAAGTTTATAATTTAAATGAGACAAACATTGATCTACGAAAAAATCTACATTCTTTC
260 AAAAGTTTATACTTTAAATGAGACAAACATGGATCTACGAAAAAATCTCCATTCTTTC
* * * *
1360280 AATGATTGGGGACCATAAACACATTATCTTCATTGGGATACAGAAAATTGACGCATTGGTTTTGC
1 AATGATTGGGCACCATAAACACGTTATCTTCATTGGGATGCACAAAATTGACGCATTGGTTTTGC
* *
1360345 AAGAAAAGCTTTTCTTGCTACGATTTTCCTTATATTTTGAGTTCGTATGTTAGATGAAACAAACA
66 AAGAAAAGCTTTTCTTGCCATGATTTTCCTTATATTTTGAGTTCGTATGTTAGATGAAACAAACA
* ** * * * *
1360410 TTGATTCTTATAACAGCCTTCATTCTTT-TCGTGACTAGGCAAACAAAAGACGTTCTCCTTTTTG
131 TGGATTCTTATAACAATCTTCATTCTTTCT-ATGATTAGGCAAACAAAACACATTCTCCTTTTTG
* * * * * *
1360474 GGAAACATGATATTAATCCTTTGATTTCATGATAAAAGGTTTTTCTCTACCGTTTTCCTTAGAAT
195 GGATACACGATATTAATGCTTTGATTTCATGAGAAAAGTTTTTTCTCTACCATTTTCCTTAGAAT
*
1360539 AAAAGTTTATACTTTAAATGAGACAAACATGGATCCACGAAAAAATCTCCATTCTTTC
260 AAAAGTTTATACTTTAAATGAGACAAACATGGATCTACGAAAAAATCTCCATTCTTTC
* * * * ** *
1360597 AGT-AGTTGGGCCCCATAAACAC-TTCATCTTGATTCGGATGCACAATGTTGGCGCATTGGTTTT
1 AATGA-TTGGGCACCATAAACACGTT-ATCTTCATTGGGATGCACAAAATTGACGCATTGGTTTT
* * *
1360660 GCAAGAAATGCTTTTCTTCCCACGATTTTCCTTATATTTTGAGTTCGTATGTTAGATGAAACAAA
64 GCAAGAAAAGCTTTTCTTGCCATGATTTTCCTTATATTTTGAGTTCGTATGTTAGATGAAACAAA
* * * * * *
1360725 CATGGAATCTTATAACAACCTTCATTCTTT-TCGTGATTACGCAAACAAAAGACATTCTCTTTTT
129 CATGGATTCTTATAACAATCTTCATTCTTTCT-ATGATTAGGCAAACAAAACACATTCTCCTTTT
* * * *
1360789 TGGGATACACAATATTAATGCTTTGATTTCATGACAAAAGTTTTTTCTCTACTATTTTCCATAGA
193 TGGGATACACGATATTAATGCTTTGATTTCATGAGAAAAGTTTTTTCTCTACCATTTTCCTTAGA
* *
1360854 ATAAAAGTCTATACTTTAAATGAGACAAACATGGATCTATGAAAAAATCTCCATTCTTTC
258 ATAAAAGTTTATACTTTAAATGAGACAAACATGGATCTACGAAAAAATCTCCATTCTTTC
* * * * *
1360914 AGTGATTGGGCCCCATAAACATGTTATCTTCATTGGGATGCACAATATTGATGCATTGGTTTTGC
1 AATGATTGGGCACCATAAACACGTTATCTTCATTGGGATGCACAAAATTGACGCATTGGTTTTGC
** * *
1360979 AAGAAAAGC-TTTCTTTGCCATGACATTCCTCT-TATTTTGAGTTCGTATGTTAAATGAAACAAG
66 AAGAAAAGCTTTTC-TTGCCATGATTTTCCT-TATATTTTGAGTTCGTATGTTAGATGAAACAAA
* * * * * * *
1361042 CATGGATTCTTATAATAATCTTCATTCCTTCCATGCTTAGGCAACCAAAACGCGTTCTCCTTATT
129 CATGGATTCTTATAACAATCTTCATTCTTTCTATGATTAGGCAAACAAAACACATTCTCCTT-TT
* * * * *
1361107 T-GGATACACGATATTAATGCTTTGATCTT-ATAAGAAAAATTTTTTTCTCAATCGTTTTCCTTA
193 TGGGATACACGATATTAATGCTTTGAT-TTCATGAG-AAAAGTTTTTTCTCTACCATTTTCCTTA
* * * *
1361170 GAATTAAAGTTTATACTTTAAATGTA-AAAAACATGGATCTACGAAAATATCACCATTCTTTC
256 GAATAAAAGTTTATACTTTAAATG-AGACAAACATGGATCTACGAAAAAATCTCCATTCTTTC
* * * * *
1361232 AATCATTAGGCACCATAAACACGTTATCTTCTTTGGGATACATAAAATTGACGCATTGGTTTTGC
1 AATGATTGGGCACCATAAACACGTTATCTTCATTGGGATGCACAAAATTGACGCATTGGTTTTGC
*
1361297 AAGAAAAGCTCTTCTTGCCATGATTTTCCTTATATTTTGAGTTCGTATGTTAGATGAAACAAACA
66 AAGAAAAGCTTTTCTTGCCATGATTTTCCTTATATTTTGAGTTCGTATGTTAGATGAAACAAACA
*
1361362 TGCATTCTTATAACAATCTTCATTCTTTCCT-TGATTAGGCAAACAAAACACATTCTCCTTTTTG
131 TGGATTCTTATAACAATCTTCATTCTTT-CTATGATTAGGCAAACAAAACACATTCTCCTTTTTG
* *
1361426 GGATACACGATATTAATGCTTTGATTTCATGAGAAAAGTTTATTCTCTACCATTTTCCTCAGAAT
195 GGATACACGATATTAATGCTTTGATTTCATGAGAAAAGTTTTTTCTCTACCATTTTCCTTAGAAT
* * *
1361491 AAAAAGTTTATAATTTAAATGAGACAAACATGGATCTAAGAAAAAATCACCATTCTTTC
260 -AAAAGTTTATACTTTAAATGAGACAAACATGGATCTACGAAAAAATCTCCATTCTTTC
* *
1361550 AATGATTGGGCACCATAAACACGTTATCTTCATTGGGATACAGAAAATTGACGCATTGGTTTTGC
1 AATGATTGGGCACCATAAACACGTTATCTTCATTGGGATGCACAAAATTGACGCATTGGTTTTGC
* * *
1361615 AAGAAAAGCTTTTCTTGCGACGATTTTCCTTATATTTTGAGTTCGTATGTTAGATGAATCAAACA
66 AAGAAAAGCTTTTCTTGCCATGATTTTCCTTATATTTTGAGTTCGTATGTTAGATGAAACAAACA
* * * * *
1361680 CT-GATTCTTATAACAACCTTCATTCTTT-TCGTGATTAGGCAAACGAAAGATATTCTCCTTTTT
131 -TGGATTCTTATAACAATCTTCATTCTTTCT-ATGATTAGGCAAACAAAACACATTCTCCTTTTT
* * * * *
1361743 GGGAAACATGATATTAATGCTTTGATTTCATGAGAAAAGGTGTTTCTCTACCGTTTTCCTTAGAA
194 GGGATACACGATATTAATGCTTTGATTTCATGAGAAAAGTTTTTTCTCTACCATTTTCCTTAGAA
* *
1361808 TAAAAGTTTATACTTTAAATGAAACAAACATGGATCTACGAAAAAATCTACATTCTTTC
259 TAAAAGTTTATACTTTAAATGAGACAAACATGGATCTACGAAAAAATCTCCATTCTTTC
* * *
1361867 AATGATTAGGG-ACCGTAAACACGTTATCTTCATTGGGATACAGAAAATTGACGCATTGGTTTTG
1 AATGATT-GGGCACCATAAACACGTTATCTTCATTGGGATGCACAAAATTGACGCATTGGTTTTG
* * *
1361931 CAAGAAAAGCTTTTCTTACAATGATTTTCCTTCTATTTTGAGTTCGTATGTTAGATGAAACAAAC
65 CAAGAAAAGCTTTTCTTGCCATGATTTTCCTTATATTTTGAGTTCGTATGTTAGATGAAACAAAC
* * * *
1361996 ACGGATTCTTATAACAACCTTCATTCTCTTC-GTGATTAGGCAAACAAAAGACATTCTCCTTTTT
130 ATGGATTCTTATAACAATCTTCATTCT-TTCTATGATTAGGCAAACAAAACACATTCTCCTTTTT
* * *
1362060 GGGATACACAATATCAATGGTTTGATTTCATGAGAAAAGTTTTTTCTCTACCATTTTCCTTAGAA
194 GGGATACACGATATTAATGCTTTGATTTCATGAGAAAAGTTTTTTCTCTACCATTTTCCTTAGAA
* *
1362125 TAAAAGTTTATACTTTATATGAAACAAACATGGATCTACGAAAAAATCTCCATTCTTTC
259 TAAAAGTTTATACTTTAAATGAGACAAACATGGATCTACGAAAAAATCTCCATTCTTTC
* *
1362184 AGTGATTGGGCACCATAAACACGTTATCTTCATTGGGATGCACAATATTGACG-ATTTGGTTTTG
1 AATGATTGGGCACCATAAACACGTTATCTTCATTGGGATGCACAAAATTGACGCA-TTGGTTTTG
* * * *
1362248 CAAGAAAAGCTTTCCTTGCCATGATTTTCCTCATATTTTAAGTTCGTACGTTAGATGAAACAAAC
65 CAAGAAAAGCTTTTCTTGCCATGATTTTCCTTATATTTTGAGTTCGTATGTTAGATGAAACAAAC
* * * * * *
1362313 ATGGATTCTTATAACAATGTTCATTCTTTCCATGCTTAGGCAAACAAAGCAAATTGTCCTTTTTG
130 ATGGATTCTTATAACAATCTTCATTCTTTCTATGATTAGGCAAACAAAACACATTCTCCTTTTTG
* * *
1362378 GGATACACGATATAAATGCTTTGATTTCATGAGAAAAGGTTTTTCTCTACCATTTTCCTTTGAAT
195 GGATACACGATATTAATGCTTTGATTTCATGAGAAAAGTTTTTTCTCTACCATTTTCCTTAGAAT
1362443 AAAAGTTTATACTTTAAATGAGACAAACATGGATCTACGAAAAAATCTCCATTCTTTC
260 AAAAGTTTATACTTTAAATGAGACAAACATGGATCTACGAAAAAATCTCCATTCTTTC
* * * *
1362501 AATGATTAGGCACCACAAACACGTTATCTTCATTGGGATGCACAATATTGACGCATTGGTTTCGC
1 AATGATTGGGCACCATAAACACGTTATCTTCATTGGGATGCACAAAATTGACGCATTGGTTTTGC
* ** * * * * *
1362566 AAGAAAAGCTTTCCTTGCCACAATTTTCCTCATATTTTGAGTTTGTATGTTAAATGAACCAAGCA
66 AAGAAAAGCTTTTCTTGCCATGATTTTCCTTATATTTTGAGTTCGTATGTTAGATGAAACAAACA
* * * * *** *
1362631 TGGATTCTTGTAACAATCTTCATTCTTTCCATGATTACGCAACCAAAACGTGTACTCCTTATTT-
131 TGGATTCTTATAACAATCTTCATTCTTTCTATGATTAGGCAAACAAAACACATTCTCCTT-TTTG
* * *
1362695 GGATACACGATATTAATGCTTTGATTTCATAAGAAAAGTTTTTT-TCTTAATCGTTTTCCTTAGA
195 GGATACACGATATTAATGCTTTGATTTCATGAGAAAAGTTTTTTCTC-T-ACCATTTTCCTTAGA
* *
1362759 ATAAAAGTTTATACTTTAAATGAGACAAACATGGATCTAC-AAAAACTCACCATTCTTTC
258 ATAAAAGTTTATACTTTAAATGAGACAAACATGGATCTACGAAAAAATCTCCATTCTTTC
* * * * * *
1362818 AATTATTGGCCACCAAAAACACGTTATCTTCATTGGGACGCACAAAATTGACGCGTTGGTTTTAC
1 AATGATTGGGCACCATAAACACGTTATCTTCATTGGGATGCACAAAATTGACGCATTGGTTTT-G
* * ** ** * *
1362883 CAA-AAAACCTTTTCTTGCCATTATTTTCCTTATATTTTCCGTTTATTTGTTAAATGAAACAAAC
65 CAAGAAAAGCTTTTCTTGCCATGATTTTCCTTATATTTTGAGTTCGTATGTTAGATGAAACAAAC
* * * * *
1362947 AAGGATTCTTATAATAGA-CTTCGTTCTTTCTACGATTAGGCAACCAAAACACATTCTCCTTTTT
130 ATGGATTCTTATAACA-ATCTTCATTCTTTCTATGATTAGGCAAACAAAACACATTCTCCTTTTT
* * *
1363011 GGGATACACGATATTAATGCTTTGATTTCCTAAGAAAAGTTTTTTCTCCACCATTTTCCTTAGAA
194 GGGATACACGATATTAATGCTTTGATTTCATGAGAAAAGTTTTTTCTCTACCATTTTCCTTAGAA
*
1363076 TAAAAGTTTTTACTTTAAATGAGACAAACATGGATCTACGAAAAAATCTCCATTCTTTC
259 TAAAAGTTTATACTTTAAATGAGACAAACATGGATCTACGAAAAAATCTCCATTCTTTC
* * *
1363135 AGTGATTGGGCACCATAAACACGTTATCTTCATTTGGATGCACAATATTGACG-ATTTGGTTTTG
1 AATGATTGGGCACCATAAACACGTTATCTTCATTGGGATGCACAAAATTGACGCA-TTGGTTTTG
* * * * *
1363199 CAAGAAAAGCTTTCCTTGCCATGATTTTCCTCATATTTTGAGTTCGTATGCTAAATGAAACAAGC
65 CAAGAAAAGCTTTTCTTGCCATGATTTTCCTTATATTTTGAGTTCGTATGTTAGATGAAACAAAC
* * * * * * * *
1363264 AGGGATTCTTATAATAACCCTCATTCTTTCCATGATTAGGCAACCAAAACGCGTTCTCCTTATTT
130 ATGGATTCTTATAACAATCTTCATTCTTTCTATGATTAGGCAAACAAAACACATTCTCCTT-TTT
* * * * *
1363329 -GGATACACGATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTTCTCAATCGTTTTCCTCAGA
194 GGGATACACGATATTAATGCTTTGATTTCATGAGAAAAG-TTTTTTCTCTACCATTTTCCTTAGA
* * * *
1363393 ATAAAAGTTTCTACTTTAAATGAAACAAACATAGATCTACGAAAAAATCTCCATTCTGTC
258 ATAAAAGTTTATACTTTAAATGAGACAAACATGGATCTACGAAAAAATCTCCATTCTTTC
* * * * * *
1363453 AATGATTGGGCACCATAAACCCGTAATCTTCATTGGAATACAAAAAATTGACGCATTGGTATTGC
1 AATGATTGGGCACCATAAACACGTTATCTTCATTGGGATGCACAAAATTGACGCATTGGTTTTGC
1363518 AAGAAAAG-TTCTTCTTGCCATGATTTTCCTTATATTTTGAGTTCGTATGTTAGATGAAACAAAC
66 AAGAAAAGCTT-TTCTTGCCATGATTTTCCTTATATTTTGAGTTCGTATGTTAGATGAAACAAAC
* * *
1363582 ATGGATTCTTATAACAATCTTCATTCTTTCCATGATTAGGCAAACAAAACAAATTCTCATTTTTG
130 ATGGATTCTTATAACAATCTTCATTCTTTCTATGATTAGGCAAACAAAACACATTCTCCTTTTTG
* * * * ** * *
1363647 GGATACACCATATAAATTCTTTCATTTCGCGAGAAAAGTTTTTTCTCCACCATTTTCCTTTGAAT
195 GGATACACGATATTAATGCTTTGATTTCATGAGAAAAGTTTTTTCTCTACCATTTTCCTTAGAAT
*
1363712 AAAAGTTTATACTTTAAATGAGACAAATATGGATCTACG-AAAAATCTCCATTCTTTC
260 AAAAGTTTATACTTTAAATGAGACAAACATGGATCTACGAAAAAATCTCCATTCTTTC
* ** * *
1363769 AATGATTGGGCACCACAAACACGTTATCTTCATTGGGATGCACAATCTTGATGCATTGGTTTCGC
1 AATGATTGGGCACCATAAACACGTTATCTTCATTGGGATGCACAAAATTGACGCATTGGTTTTGC
* * * * * *
1363834 AAGAAAAGCTTTCCTTGCCATGAATTTCCTCATATTTTGAGTTCGTATGTTAAATTAAACAAGCA
66 AAGAAAAGCTTTTCTTGCCATGATTTTCCTTATATTTTGAGTTCGTATGTTAGATGAAACAAACA
* * * * * ** *
1363899 TAGATTCTTATAATAATCTTCATTCTTTCCATGATTACGCAACCAAAACAGGTACTCCTTATTT-
131 TGGATTCTTATAACAATCTTCATTCTTTCTATGATTAGGCAAACAAAACACATTCTCCTT-TTTG
* * * * * *
1363963 GGATACACGATATTAATGCTTTAATTTCATAAGAAAAGTTTTTTTCTCAATCGTTTTCCTCAGAA
195 GGATACACGATATTAATGCTTTGATTTCATGAGAAAAG-TTTTTTCTCTACCATTTTCCTTAGAA
* *
1364028 TAAAAGTTTATACTTTAAATGAAACAAACATGGATCTACG-AAAAATCTCCATTTTTTC
259 TAAAAGTTTATACTTTAAATGAGACAAACATGGATCTACGAAAAAATCTCCATTCTTTC
* * * *
1364086 AATGATTGGGCACCATAAACACGCTATCTTTATTGGGATACACAAAATTGACGCATTGGTTTTAC
1 AATGATTGGGCACCATAAACACGTTATCTTCATTGGGATGCACAAAATTGACGCATTGGTTTTGC
*
1364151 AAGAAAAGCTCTTCTTGCCATGATTTTCCTTATA-TTTGAGTTCGTATGTTAGATGAAACAAACA
66 AAGAAAAGCTTTTCTTGCCATGATTTTCCTTATATTTTGAGTTCGTATGTTAGATGAAACAAACA
1364215 TGGATTCTTATAACAATCTTCATTCTTTCCT-TGATTAGGCAAACAAAACACATTCTCCTTTTTG
131 TGGATTCTTATAACAATCTTCATTCTTT-CTATGATTAGGCAAACAAAACACATTCTCCTTTTTG
* * * * * *
1364279 GGATACGCGATATTAACGCTTTGATCTCATTAGAAAAGTTTTTTCTCTACCATTTTCCTCAAAAT
195 GGATACACGATATTAATGCTTTGATTTCATGAGAAAAGTTTTTTCTCTACCATTTTCCTTAGAAT
* * *
1364344 AAAAGTTTATAATTTAAATGAGACAAACATTGATCTACGAAAAAATCTACATTCTTTC
260 AAAAGTTTATACTTTAAATGAGACAAACATGGATCTACGAAAAAATCTCCATTCTTTC
* * * *
1364402 AATGATTGGGGACCATAAACACATTATCTTCATTGGGATACAGAAAATTGACGCATTGGTTTTGC
1 AATGATTGGGCACCATAAACACGTTATCTTCATTGGGATGCACAAAATTGACGCATTGGTTTTGC
* *
1364467 AAGAAAAGCTTTTCTTGCTACGATTTTCCTTATATTTTGAGTTCGTATGTTAGATGAAACAAACA
66 AAGAAAAGCTTTTCTTGCCATGATTTTCCTTATATTTTGAGTTCGTATGTTAGATGAAACAAACA
* ** * * * *
1364532 TTGATTCTTATAACAGCCTTCATTCTTT-TCGTGACTAGGCAAACAAAAGACGTTCTCCTTTTTG
131 TGGATTCTTATAACAATCTTCATTCTTTCT-ATGATTAGGCAAACAAAACACATTCTCCTTTTTG
* * * * * *
1364596 GGAAACATGATATTAATCCTTTGATTTCATGATAAAAGGTTTTTCTCTACCGTTTTCCTTAGAAT
195 GGATACACGATATTAATGCTTTGATTTCATGAGAAAAGTTTTTTCTCTACCATTTTCCTTAGAAT
*
1364661 AAAAGTTTATACTTTAAATGAGACAAACATGGATCCACGAAAAAATCTCCATTCTTTC
260 AAAAGTTTATACTTTAAATGAGACAAACATGGATCTACGAAAAAATCTCCATTCTTTC
* * * * ** *
1364719 AGT-AGTTGGGCCCCATAAACAC-TTCATCTTGATTCGGATGCACAATGTTGGCGCATTGGTTTT
1 AATGA-TTGGGCACCATAAACACGTT-ATCTTCATTGGGATGCACAAAATTGACGCATTGGTTTT
* * *
1364782 GCAAGAAATGCTTTTCTTCCCACGATTTTCCTTATATTTTGAGTTCGTATGTTAGATGAAACAAA
64 GCAAGAAAAGCTTTTCTTGCCATGATTTTCCTTATATTTTGAGTTCGTATGTTAGATGAAACAAA
* * * * * *
1364847 CATGGAATCTTATAACAACCTTCATTCTTT-TCGTGATTACGCAAACAAAAGACATTCTCTTTTT
129 CATGGATTCTTATAACAATCTTCATTCTTTCT-ATGATTAGGCAAACAAAACACATTCTCCTTTT
* * * *
1364911 TGGGATACACAATATTAATGCTTTGATTTCATGACAAAAGTTTTTTCTCTACTATTTTCCATAGA
193 TGGGATACACGATATTAATGCTTTGATTTCATGAGAAAAGTTTTTTCTCTACCATTTTCCTTAGA
* *
1364976 ATAAAAGTCTATACTTTAAATGAGACAAACATGGATCTATGAAAAAATCTCCATTCTTTC
258 ATAAAAGTTTATACTTTAAATGAGACAAACATGGATCTACGAAAAAATCTCCATTCTTTC
* * * * *
1365036 AGTGATTGGGCCCCATAAACATGTTATCTTCATTGGGATGCACAATATTGATGCATTGGTTTTGC
1 AATGATTGGGCACCATAAACACGTTATCTTCATTGGGATGCACAAAATTGACGCATTGGTTTTGC
** * *
1365101 AAGAAAAGC-TTTCTTTGCCATGACATTCCTCT-TATTTTGAGTTCGTATGTTAAATGAAACAAG
66 AAGAAAAGCTTTTC-TTGCCATGATTTTCCT-TATATTTTGAGTTCGTATGTTAGATGAAACAAA
* * * * * * *
1365164 CATGGATTCTTATAATAATCTTCATTCCTTCCATGCTTAGGCAACCAAAACGCGTTCTCCTTATT
129 CATGGATTCTTATAACAATCTTCATTCTTTCTATGATTAGGCAAACAAAACACATTCTCCTT-TT
* * * * *
1365229 T-GGATACACGATATTAATGCTTTGATCTT-ATAAGAAAAATTTTTTTCTCAATCGTTTTCCTTA
193 TGGGATACACGATATTAATGCTTTGAT-TTCATGAG-AAAAGTTTTTTCTCTACCATTTTCCTTA
* * * *
1365292 GAATTAAAGTTTATACTTTAAATGTA-AAAAACATGGATCTACGAAAATATCACCATTCTTTC
256 GAATAAAAGTTTATACTTTAAATG-AGACAAACATGGATCTACGAAAAAATCTCCATTCTTTC
* * * * *
1365354 AATCATTAGGCACCATAAACACGTTATCTTCTTTGGGATACATAAAATTGACGCATTGGTTTTGC
1 AATGATTGGGCACCATAAACACGTTATCTTCATTGGGATGCACAAAATTGACGCATTGGTTTTGC
*
1365419 AAGAAAAGCTCTTCTTGCCATGATTTTCCTTATATTTTGAGTTCGTATGTTAGATGAAACAAACA
66 AAGAAAAGCTTTTCTTGCCATGATTTTCCTTATATTTTGAGTTCGTATGTTAGATGAAACAAACA
*
1365484 TGCATTCTTATAACAATCTTCATTCTTTCCT-TGATTAGGCAAACAAAACACATTCTCCTTTTTG
131 TGGATTCTTATAACAATCTTCATTCTTT-CTATGATTAGGCAAACAAAACACATTCTCCTTTTTG
* *
1365548 GGATACACGATATTAATGCTTTGATTTCATGAGAAAAGTTTATTCTCTACCATTTTCCTCAGAAT
195 GGATACACGATATTAATGCTTTGATTTCATGAGAAAAGTTTTTTCTCTACCATTTTCCTTAGAAT
* * *
1365613 AAAAAGTTTATAATTTAAATGAGACAAACATGGATCTAAGAAAAAATCACCATTCTTTC
260 -AAAAGTTTATACTTTAAATGAGACAAACATGGATCTACGAAAAAATCTCCATTCTTTC
* * *
1365672 AATGATTGGGCACCATAAACACGTTATCTTCATTGGGATACAGAAAATTGACACATTGGTTTTGC
1 AATGATTGGGCACCATAAACACGTTATCTTCATTGGGATGCACAAAATTGACGCATTGGTTTTGC
* * *
1365737 AAGAAAAGCTTTTCTTGCGACGATTTTCCTTATATTTTGAGTTCGTATGTTAGATGAATCAAACA
66 AAGAAAAGCTTTTCTTGCCATGATTTTCCTTATATTTTGAGTTCGTATGTTAGATGAAACAAACA
* * * * *
1365802 CT-GATTCTTATAACAACCTTCATTCTTT-TCGTGATTAGGCAAACGAAAGATATTCTCCTTTTT
131 -TGGATTCTTATAACAATCTTCATTCTTTCT-ATGATTAGGCAAACAAAACACATTCTCCTTTTT
* * * * *
1365865 GGGAAACATGATATTAATGCTTTGATTTCATGAGAAAAGGTGTTTCTCTACCGTTTTCCTTAGAA
194 GGGATACACGATATTAATGCTTTGATTTCATGAGAAAAGTTTTTTCTCTACCATTTTCCTTAGAA
* *
1365930 TAAAAGTTTATACTTTAAATGAAACAAACATGGATCTACGAAAAAATCTACATTCTTTC
259 TAAAAGTTTATACTTTAAATGAGACAAACATGGATCTACGAAAAAATCTCCATTCTTTC
* * *
1365989 AATGATTAGGG-ACCGTAAACACGTTATCTTCATTGGGATACAGAAAATTGACGCATTGGTTTTG
1 AATGATT-GGGCACCATAAACACGTTATCTTCATTGGGATGCACAAAATTGACGCATTGGTTTTG
* * *
1366053 CAAGAAAAGCTTTTCTTACAATGATTTTCCTTCTATTTTGAGTTCGTATGTTAGATGAAACAAAC
65 CAAGAAAAGCTTTTCTTGCCATGATTTTCCTTATATTTTGAGTTCGTATGTTAGATGAAACAAAC
* * * *
1366118 ACGGATTCTTATAACAACCTTCATTCTCTTC-GTGATTAGGCAAACAAAAGACATTCTCCTTTTT
130 ATGGATTCTTATAACAATCTTCATTCT-TTCTATGATTAGGCAAACAAAACACATTCTCCTTTTT
* * *
1366182 GGGATACACAATATCAATGGTTTGATTTCATGAGAAAAGTTTTTTCTCTACCATTTTCCTTAGAA
194 GGGATACACGATATTAATGCTTTGATTTCATGAGAAAAGTTTTTTCTCTACCATTTTCCTTAGAA
* *
1366247 TAAAAGTTTATACTTTATATGAAACAAACATGGATCTACGAAAAAATCTCCATTCTTTC
259 TAAAAGTTTATACTTTAAATGAGACAAACATGGATCTACGAAAAAATCTCCATTCTTTC
* *
1366306 AGTGATTGGGCACCATAAACACGTTATCTTCATTGGGATGCACAATATTGACG-ATTTGGTTTTG
1 AATGATTGGGCACCATAAACACGTTATCTTCATTGGGATGCACAAAATTGACGCA-TTGGTTTTG
* * * *
1366370 CAAGAAAAGCTTTCCTTGCCATGATTTTCCTCATATTTTAAGTTCGTACGTTAGATGAAACAAAC
65 CAAGAAAAGCTTTTCTTGCCATGATTTTCCTTATATTTTGAGTTCGTATGTTAGATGAAACAAAC
* * * * * *
1366435 ATGGATTCTTATAACAATGTTCATTCTTTCCATGCTTAGGCAAACAAAGCAAATTGTCCTTTTTG
130 ATGGATTCTTATAACAATCTTCATTCTTTCTATGATTAGGCAAACAAAACACATTCTCCTTTTTG
* * *
1366500 GGATACACGATATAAATGCTTTGATTTCATGAGAAAAGGTTTTTCTCTACCATTTTCCTTTGAAT
195 GGATACACGATATTAATGCTTTGATTTCATGAGAAAAGTTTTTTCTCTACCATTTTCCTTAGAAT
1366565 AAAAGTTTATACTTTAAATGAGACAAACATGGATCTACGAAAAAATCTCCATTCTTTC
260 AAAAGTTTATACTTTAAATGAGACAAACATGGATCTACGAAAAAATCTCCATTCTTTC
* * * *
1366623 AATGATTAGGCACCACAAACACGTTATCTTCATTGGGATGCACAATATTGACGCATTGGTTTCGC
1 AATGATTGGGCACCATAAACACGTTATCTTCATTGGGATGCACAAAATTGACGCATTGGTTTTGC
* ** * * * * *
1366688 AAGAAAAGCTTTCCTTGCCACAATTTTCCTCATATTTTGAGTTTGTATGTTAAATGAACCAAGCA
66 AAGAAAAGCTTTTCTTGCCATGATTTTCCTTATATTTTGAGTTCGTATGTTAGATGAAACAAACA
* * * * *** *
1366753 TGGATTCTTGTAACAATCTTCATTCTTTCCATGATTACGCAACCAAAACGTGTACTCCTTATTT-
131 TGGATTCTTATAACAATCTTCATTCTTTCTATGATTAGGCAAACAAAACACATTCTCCTT-TTTG
* * *
1366817 GGATACACGATATTAATGCTTTGATTTCATAAGAAAAGTTTTTT-TCTTAATCGTTTTCCTTAGA
195 GGATACACGATATTAATGCTTTGATTTCATGAGAAAAGTTTTTTCTC-T-ACCATTTTCCTTAGA
* *
1366881 ATAAAAGTTTATACTTTAAATGAGACAAACATGGATCTAC-AAAAACTCACCATTCTTTC
258 ATAAAAGTTTATACTTTAAATGAGACAAACATGGATCTACGAAAAAATCTCCATTCTTTC
* * * * * *
1366940 AATTATTGGCCACCAAAAACACGTTATCTTCATTGGGACGCACAAAATTGACGCGTTGGTTTTAC
1 AATGATTGGGCACCATAAACACGTTATCTTCATTGGGATGCACAAAATTGACGCATTGGTTTT-G
* * ** ** * *
1367005 CAA-AAAACCTTTTCTTGCCATTATTTTCCTTATATTTTCCGTTTATTTGTTAAATGAAACAAAC
65 CAAGAAAAGCTTTTCTTGCCATGATTTTCCTTATATTTTGAGTTCGTATGTTAGATGAAACAAAC
* * * * *
1367069 AAGGATTCTTATAATAGA-CTTCGTTCTTTCTACGATTAGGCAACCAAAACACATTCTCCTTTTT
130 ATGGATTCTTATAACA-ATCTTCATTCTTTCTATGATTAGGCAAACAAAACACATTCTCCTTTTT
* * *
1367133 GGGATACACGATATTAATGCTTTGATTTCCTAAGAAAAGTTTTTTCTCCACCATTTTCCTTAGAA
194 GGGATACACGATATTAATGCTTTGATTTCATGAGAAAAGTTTTTTCTCTACCATTTTCCTTAGAA
*
1367198 TAAAAGTTTTTACTTTAAATGAGACAAACATGGATCTACGAAAAAATCTCCATTCTTTC
259 TAAAAGTTTATACTTTAAATGAGACAAACATGGATCTACGAAAAAATCTCCATTCTTTC
* * *
1367257 AGTGATTGGGCACCATAAACACGTTATCTTCATTTGGATGCACAATATTGACG-ATTTGGTTTTG
1 AATGATTGGGCACCATAAACACGTTATCTTCATTGGGATGCACAAAATTGACGCA-TTGGTTTTG
* * * * *
1367321 CAAGAAAAGCTTTCCTTGCCATGATTTTCCTCATATTTTGAGTTCGTATGCTAAATGAAACAAGC
65 CAAGAAAAGCTTTTCTTGCCATGATTTTCCTTATATTTTGAGTTCGTATGTTAGATGAAACAAAC
* * * * * * * *
1367386 AGGGATTCTTATAATAACCCTCATTCTTTCCATGATTAGGCAACCAAAACGCGTTCTCCTTATTT
130 ATGGATTCTTATAACAATCTTCATTCTTTCTATGATTAGGCAAACAAAACACATTCTCCTT-TTT
* * * * *
1367451 -GGATACACGATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTTCTCAATCGTTTTCCTCAGA
194 GGGATACACGATATTAATGCTTTGATTTCATGAGAAAAG-TTTTTTCTCTACCATTTTCCTTAGA
* * * *
1367515 ATAAAAGTTTCTACTTTAAATGAAACAAACATAGATCTACGAAAAAATCTCCATTCTGTC
258 ATAAAAGTTTATACTTTAAATGAGACAAACATGGATCTACGAAAAAATCTCCATTCTTTC
* * * * * *
1367575 AATGATTGGGCACCATAAACCCGTAATCTTCATTGGAATACAAAAAATTGACGCATTGGTATTGC
1 AATGATTGGGCACCATAAACACGTTATCTTCATTGGGATGCACAAAATTGACGCATTGGTTTTGC
1367640 AAGAAAAG-TTCTTCTTGCCATGATTTTCCTTATATTTTGAGTTCGTATGTTAGATGAAACAAAC
66 AAGAAAAGCTT-TTCTTGCCATGATTTTCCTTATATTTTGAGTTCGTATGTTAGATGAAACAAAC
* * *
1367704 ATGGATTCTTATAACAATCTTCATTCTTTCCATGATTAGGCAAACAAAACAAATTCTCATTTTTG
130 ATGGATTCTTATAACAATCTTCATTCTTTCTATGATTAGGCAAACAAAACACATTCTCCTTTTTG
* * * * * * *
1367769 GGATACACCATATAAATTCTTTCATTTCGTGAGAAAAGTTTTTTCTCCACCATTTTCCTTTGAAT
195 GGATACACGATATTAATGCTTTGATTTCATGAGAAAAGTTTTTTCTCTACCATTTTCCTTAGAAT
*
1367834 AAAAGTTTATACTTTAAATGAGACAAATATGGATCTACG-AAAAATCTCCATTCTTTC
260 AAAAGTTTATACTTTAAATGAGACAAACATGGATCTACGAAAAAATCTCCATTCTTTC
* ** * *
1367891 AATGATTGGGCACCACAAACACGTTATCTTCATTGGGATGCACAATCTTGATGCATTGGTTTCGC
1 AATGATTGGGCACCATAAACACGTTATCTTCATTGGGATGCACAAAATTGACGCATTGGTTTTGC
* * * * * *
1367956 AAGAAAAGCTTTCCTTGCCATGAATTTCCTCATATTTTGAGTTCGTATGTTAAATTAAACAAGCA
66 AAGAAAAGCTTTTCTTGCCATGATTTTCCTTATATTTTGAGTTCGTATGTTAGATGAAACAAACA
* * * * * ** *
1368021 TAGATTCTTATAATAATCTTCATTCTTTCCATGATTACGCAACCAAAACAGGTACTCCTTATTT-
131 TGGATTCTTATAACAATCTTCATTCTTTCTATGATTAGGCAAACAAAACACATTCTCCTT-TTTG
* * * * *
1368085 GGATACACGATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTTCTCAATCGTTTTCCTCAGAA
195 GGATACACGATATTAATGCTTTGATTTCATGAGAAAAG-TTTTTTCTCTACCATTTTCCTTAGAA
* * *
1368150 TAAAAGTTTATACTTTAAATGAAACAAACATGGATCTACAAAAAAATCTCCATTTTTTC
259 TAAAAGTTTATACTTTAAATGAGACAAACATGGATCTACGAAAAAATCTCCATTCTTTC
* * * *
1368209 AATGATTGGGCACCATAAACACGCTATCTTTATTGGGATACACAAAATTGACGCATTGGTTTTAC
1 AATGATTGGGCACCATAAACACGTTATCTTCATTGGGATGCACAAAATTGACGCATTGGTTTTGC
* * *
1368274 AAGAAAAGCTCTTCTTGCCATGATTTTCCTTATATTTTGAGTTCATATATTAGATGAAACAAACA
66 AAGAAAAGCTTTTCTTGCCATGATTTTCCTTATATTTTGAGTTCGTATGTTAGATGAAACAAACA
1368339 TGGATTCTTATAACAATCTTCATTCTTTCCT-TGATTAGGCAAACAAAACACATTCTCCTTTTTG
131 TGGATTCTTATAACAATCTTCATTCTTT-CTATGATTAGGCAAACAAAACACATTCTCCTTTTTG
* * * * * *
1368403 GGATACGCGATATTAACGCTTTGATCTCATTAGAAAAGTTTTTTCTCTACCATTTTCCTCAAAAT
195 GGATACACGATATTAATGCTTTGATTTCATGAGAAAAGTTTTTTCTCTACCATTTTCCTTAGAAT
* * *
1368468 AAAAGTTTATAATTTAAATGAGACAAACATTGATCTACGAAAAAATCTACATTCTTTC
260 AAAAGTTTATACTTTAAATGAGACAAACATGGATCTACGAAAAAATCTCCATTCTTTC
* * * *
1368526 AATGATTGGGGACCATAAACACATTATCTTCATTGGGATACAGAAAATTGACGCATTGGTTTTGC
1 AATGATTGGGCACCATAAACACGTTATCTTCATTGGGATGCACAAAATTGACGCATTGGTTTTGC
* *
1368591 AAGAAAAGCTTTTCTTGCTACGATTTTCCTTATATTTTGAGTTCGTATGTTAGATGAAACAAACA
66 AAGAAAAGCTTTTCTTGCCATGATTTTCCTTATATTTTGAGTTCGTATGTTAGATGAAACAAACA
* ** * * * *
1368656 TTGATTCTTATAACAGCCTTCATTCTTT-TCGTGACTAGGCAAACAAAAGACGTTCTCCTTTTTG
131 TGGATTCTTATAACAATCTTCATTCTTTCT-ATGATTAGGCAAACAAAACACATTCTCCTTTTTG
* * * * * *
1368720 GGAAACATGATATTAATCCTTTGATTTCATGATAAAAGGTTTTTCTCTACCGTTTTCCTTAGAAT
195 GGATACACGATATTAATGCTTTGATTTCATGAGAAAAGTTTTTTCTCTACCATTTTCCTTAGAAT
*
1368785 AAAAGTTTATACTTTAAATGAGACAAACATGGATCCACGAAAAAATCTCCATTCTTTC
260 AAAAGTTTATACTTTAAATGAGACAAACATGGATCTACGAAAAAATCTCCATTCTTTC
* * * * ** *
1368843 AGT-AGTTGGGCCCCATAAACAC-TTCATCTTGATTCGGATGCACAATGTTGGCGCATTGGTTTT
1 AATGA-TTGGGCACCATAAACACGTT-ATCTTCATTGGGATGCACAAAATTGACGCATTGGTTTT
* * *
1368906 GCAAGAAATGCTTTTCTTCCCACGATTTTCCTTATATTTTGAGTTCGTATGTTAGATGAAACAAA
64 GCAAGAAAAGCTTTTCTTGCCATGATTTTCCTTATATTTTGAGTTCGTATGTTAGATGAAACAAA
* * * *
1368971 CATGGAATCTTATAACAACCTTCATTCTTT-TCATGATTACGCAAACAAAAGACATTCT-CTCTT
129 CATGGATTCTTATAACAATCTTCATTCTTTCT-ATGATTAGGCAAACAAAACACATTCTCCT-TT
* * * *
1369034 TTGGGATACACAATATTAATGCTTTGATTTCATGACAAAAGTTTTTTCTCTACTATTTTCCATAG
192 TTGGGATACACGATATTAATGCTTTGATTTCATGAGAAAAGTTTTTTCTCTACCATTTTCCTTAG
* *
1369099 AATAAAAGTCTATACTTTAAATGAGACAAACATGGATCTATGAAAAAATCTCCATTCTTTC
257 AATAAAAGTTTATACTTTAAATGAGACAAACATGGATCTACGAAAAAATCTCCATTCTTTC
* * * * *
1369160 AGTGATTGGGCCCCATAAACATGTTATCTTCATTGGGATGCACAATATTGATGCATTGGTTTTGC
1 AATGATTGGGCACCATAAACACGTTATCTTCATTGGGATGCACAAAATTGACGCATTGGTTTTGC
** * *
1369225 AAGAAAAGC-TTTCTTTGCCATGACATTCCTCT-TATTTTGAGTTCGTATGTTAAATGAAACAAG
66 AAGAAAAGCTTTTC-TTGCCATGATTTTCCT-TATATTTTGAGTTCGTATGTTAGATGAAACAAA
* * * * * * *
1369288 CATGGATTCTTATAATAATCTTCATTCCTTCCATGCTTAGGCAACCAAAACGCGTTCTCCTTATT
129 CATGGATTCTTATAACAATCTTCATTCTTTCTATGATTAGGCAAACAAAACACATTCTCCTT-TT
* ** * * *
1369353 T-GGATACACGATATTAATGCTTTGATCTT-ATAAGAAAAAATTTTTCTCAATCGTTTTCCTTAG
193 TGGGATACACGATATTAATGCTTTGAT-TTCATGAGAAAAGTTTTTTCTCTACCATTTTCCTTAG
* *
1369416 AATTAAAGTTTATACTTTAAATGTA-ACAAACATGGATCTACGAAAAAATCTACATTCTTTC
257 AATAAAAGTTTATACTTTAAATG-AGACAAACATGGATCTACGAAAAAATCTCCATTCTTTC
* * *
1369477 AATGATTAGGG-ACCGTAAACACGTTATCTTCATTGGGATACAGAAAATTGACGCATTGGTTTTG
1 AATGATT-GGGCACCATAAACACGTTATCTTCATTGGGATGCACAAAATTGACGCATTGGTTTTG
* * *
1369541 CAAGAAAAGCTTTTCTTGCAATGATTTTCCTTCTATTTTGAGTTCGTATTTTAGATGAAACAAAC
65 CAAGAAAAGCTTTTCTTGCCATGATTTTCCTTATATTTTGAGTTCGTATGTTAGATGAAACAAAC
* * * *
1369606 ACGGATTCTTATAACAACCTTCATTCTCTTC-GTGATTAGGCAAACAAAAGACATTCTCCTTTTT
130 ATGGATTCTTATAACAATCTTCATTCT-TTCTATGATTAGGCAAACAAAACACATTCTCCTTTTT
* * **
1369670 GGGATACACAATATCAATGGGTTGATTTCATGAGAAAAGTTTTTTCTCTACCATTTTCCTTAGAA
194 GGGATACACGATATTAATGCTTTGATTTCATGAGAAAAGTTTTTTCTCTACCATTTTCCTTAGAA
* *
1369735 TAAAAGTTTATACTTTATATGAAACAAACATGGATCTACGAAAAAATCTCCATTCTTTC
259 TAAAAGTTTATACTTTAAATGAGACAAACATGGATCTACGAAAAAATCTCCATTCTTTC
* * * * * *
1369794 AGTGATTGGGCCCCATAAAAACGTTATCTTCCTTGGGATGCACAATATTGATGCATTGGTTTTGC
1 AATGATTGGGCACCATAAACACGTTATCTTCATTGGGATGCACAAAATTGACGCATTGGTTTTGC
* * * *
1369859 AAGAAAAGCTTTCCTTGCCATGATATTCCTCT-TACTTTGAGTTCGTATGTTAAATGAAAC--A-
66 AAGAAAAGCTTTTCTTGCCATGATTTTCCT-TATATTTTGAGTTCGTATGTTAGATGAAACAAAC
* * * * * * *
1369920 A--G----------C-A--TTGATTCTTTCCATGCTTAGGCAACCAAAACGCATTCACCTTTTTT
130 ATGGATTCTTATAACAATCTTCATTCTTTCTATGATTAGGCAAACAAAACACATTCTCCTTTTTG
* * * * * *
1369970 GGATACATGATATTAATGCTTTGATCTCATAAGAAAAGTTTTTTTCTCAATCGTTTTCCTTAGAA
195 GGATACACGATATTAATGCTTTGATTTCATGAGAAAAG-TTTTTTCTCTACCATTTTCCTTAGAA
* * * *
1370035 TAAAAGTTTACACTTTAAATGAAATAAACATGGATCTACGAAAAAATCACCATTCTTTC
259 TAAAAGTTTATACTTTAAATGAGACAAACATGGATCTACGAAAAAATCTCCATTCTTTC
* * * * * *
1370094 TATGATTAGGCACCATAAACACTTTATCTTCATTGGGATACAGAAAATTGACGCATTGGTTTTCC
1 AATGATTGGGCACCATAAACACGTTATCTTCATTGGGATGCACAAAATTGACGCATTGGTTTTGC
* * * *
1370159 AAGAAAAGCTTTTCTTGCCACGATTTTCCTTATATTTTGAGTTTGTATGTTAGATGAATCAAACC
66 AAGAAAAGCTTTTCTTGCCATGATTTTCCTTATATTTTGAGTTCGTATGTTAGATGAAACAAACA
** * * * * * *
1370224 CCGATTCTTATAACAACCTTCATTCTTTTTGTGATTAGGCAAACGAAAGATATTCTCCTTTTTGG
131 TGGATTCTTATAACAATCTTCATTCTTTCTATGATTAGGCAAACAAAACACATTCTCCTTTTTGG
* * * *
1370289 GAAACATGATATTAATGCTTTGATTTCATGAGAAAAGGTTTTTCTCTACCGTTTTCCTTAGAATA
196 GATACACGATATTAATGCTTTGATTTCATGAGAAAAGTTTTTTCTCTACCATTTTCCTTAGAATA
* * *
1370354 AAAGTTTATACTTTAAATGAAACAAACATGGATCTACAAAAAAATCTACATTCTTTC
261 AAAGTTTATACTTTAAATGAGACAAACATGGATCTACGAAAAAATCTCCATTCTTTC
* * * * *
1370411 AATGATTGGGGACCATAAACACGTTAACTTTATTGGGATACAGAAAATTGACGCATTGGTTTTGC
1 AATGATTGGGCACCATAAACACGTTATCTTCATTGGGATGCACAAAATTGACGCATTGGTTTTGC
* * *
1370476 AAGAACAGCTTTTCGTGCGATGATTTTCCTTATATTTTGAGTTCGTATGTTAGATGAAACAAACA
66 AAGAAAAGCTTTTCTTGCCATGATTTTCCTTATATTTTGAGTTCGTATGTTAGATGAAACAAACA
* * *
1370541 TGGATTCTTATAACAACCTTCATTCTCTTC-GTGATTAGGCAAACAAAAGACATTCTCCTTTTTG
131 TGGATTCTTATAACAATCTTCATTCT-TTCTATGATTAGGCAAACAAAACACATTCTCCTTTTTG
* * * * *
1370605 GGATACACAATATCAATGGTTTGATTTCATGAGAAAAGTTTTTTCTCCACCATTTTCCTTAAAAT
195 GGATACACGATATTAATGCTTTGATTTCATGAGAAAAGTTTTTTCTCTACCATTTTCCTTAGAAT
* * * * *
1370670 AAAAGTTTGTACTTTATATGAAACAAACATGGATCTACAAAAAAATCTCCATTCTTTT
260 AAAAGTTTATACTTTAAATGAGACAAACATGGATCTACGAAAAAATCTCCATTCTTTC
* * * * *
1370728 AGTGATTGGGCCCCATAAAAACGTTATCTTCATTGGGATGCACAATATTGATGCATTGGTTTTGC
1 AATGATTGGGCACCATAAACACGTTATCTTCATTGGGATGCACAAAATTGACGCATTGGTTTTGC
* * * * *
1370793 AAGAAAAGCTTTTCTTGCCATGATATTCCTCT-TACTTTGAGTTTGTATGTTAAATGAAACAAGC
66 AAGAAAAGCTTTTCTTGCCATGATTTTCCT-TATATTTTGAGTTCGTATGTTAGATGAAACAAAC
* * * * * * *
1370857 ATTGATTC-T-T-----TC--CA------C---GCTTAGCCAACCAAAACGCGTTCTCCTTTTTT
130 ATGGATTCTTATAACAATCTTCATTCTTTCTATGATTAGGCAAACAAAACACATTCTCCTTTTTG
* * * * * *
1370904 GGATATACGATATTAATGCTTTGATCTCATAAGAAAAGTTTTTTTCTCAATCGTTTTCCTTAGAA
195 GGATACACGATATTAATGCTTTGATTTCATGAGAAAAG-TTTTTTCTCTACCATTTTCCTTAGAA
* * * *
1370969 TAAAAGTTTACACTTTAAATGAAACAAACATGGATCTACGAAAAAATCACCATTCATTC
259 TAAAAGTTTATACTTTAAATGAGACAAACATGGATCTACGAAAAAATCTCCATTCTTTC
* * * *
1371028 AATGATTAGGCACCATAAACACGTTATCTTCATTGGGATACAGAAAATTGGCGCATTGGTTTTGC
1 AATGATTGGGCACCATAAACACGTTATCTTCATTGGGATGCACAAAATTGACGCATTGGTTTTGC
* *
1371093 AAGAAAAGCTTTTCTTGCCACGATTTTCCTTATATTTTAAGTTTC-TATGTTAGATGAAACAAAC
66 AAGAAAAGCTTTTCTTGCCATGATTTTCCTTATATTTTGAG-TTCGTATGTTAGATGAAACAAAC
* * * *
1371157 ATTGATTCTTATAACAA-CGTTCATT-TTTTTCGTGATTAGGCAAACAAAAGACATTCTCCTTTT
130 ATGGATTCTTATAACAATC-TTCATTCTTTCT-ATGATTAGGCAAACAAAACACATTCTCCTTTT
* * * *
1371220 TGGGAAACATGATATTAATGCTTTGATTTCATGAGAAAAGGTTTTTCTCTACCGTTTTCCTTAGA
193 TGGGATACACGATATTAATGCTTTGATTTCATGAGAAAAGTTTTTTCTCTACCATTTTCCTTAGA
* *
1371285 ATAAAAG-TTATACTTTAAATGA-AGCAACCATGGATCTACGAAAAAATCTCCATTCTTTT
258 ATAAAAGTTTATACTTTAAATGAGA-CAAACATGGATCTACGAAAAAATCTCCATTCTTTC
** * * * ** ** *
1371344 TGTG-GTGGGCCCCATAAACACTTTATCTT--TTTAGATGCACAATGTTGGCGCATTGGTTTTGC
1 AATGATTGGGCACCATAAACACGTTATCTTCATTGGGATGCACAAAATTGACGCATTGGTTTTGC
* * * * *
1371406 AAGAAAACCTTTTCCTGCCACGATTTTCCTTATTTTTTGGGTTCGTATGTTAGATGAAACAAACA
66 AAGAAAAGCTTTTCTTGCCATGATTTTCCTTATATTTTGAGTTCGTATGTTAGATGAAACAAACA
* * * *
1371471 TGGATTCTTATAACAACCTTCATTCCTTTC-GTGATTAGGCAAAGAAAAGACATTCTCCTTTTTG
131 TGGATTCTTATAACAATCTTCATT-CTTTCTATGATTAGGCAAACAAAACACATTCTCCTTTTTG
* ** *
1371535 GGATGCAAAATATTAATTG-TTTGATTTCATGAGAAAAGTTTTTTCTCTACCATTTTCCTTAGTA
195 GGATACACGATATTAA-TGCTTTGATTTCATGAGAAAAGTTTTTTCTCTACCATTTTCCTTAGAA
* *
1371599 TAAAAGTTTATACTTTAAATGAAACAAACATGGATCTATGAAAAAATCTCCATTCTTTC
259 TAAAAGTTTATACTTTAAATGAGACAAACATGGATCTACGAAAAAATCTCCATTCTTTC
* * *
1371658 AGTGATTGGGCCCCATAAACACGTTATCTTCATTGGGATGCACAATATTGACGCATTGGTTTTGC
1 AATGATTGGGCACCATAAACACGTTATCTTCATTGGGATGCACAAAATTGACGCATTGGTTTTGC
* * * * * * * *
1371723 AAGAAAACCTTTCCTTGCCAGGATATTCCTCT-TACTTTGAGTTCGTATGTTAAATGAAGCAAGC
66 AAGAAAAGCTTTTCTTGCCATGATTTTCCT-TATATTTTGAGTTCGTATGTTAGATGAAACAAAC
* * * * * * *
1371787 ATTGATTCTTATAATAATCTTCATTCTTTCCATGCTTAGGCAACCAAAACGCGTTCTCCTTATTT
130 ATGGATTCTTATAACAATCTTCATTCTTTCTATGATTAGGCAAACAAAACACATTCTCCTT-TTT
* * * * *
1371852 -GGATACACGATATTAATGCTTTGATCTCATAAGAAAAGTTTTTTTCTCAATCATTTTCTTTAGA
194 GGGATACACGATATTAATGCTTTGATTTCATGAGAAAAG-TTTTTTCTCTACCATTTTCCTTAGA
* * *
1371916 ATAAAAGTTTATACTTTAAATGAAACAAACATGGATCTACGAAAAAATCACCAATCTTTC
258 ATAAAAGTTTATACTTTAAATGAGACAAACATGGATCTACGAAAAAATCTCCATTCTTTC
* *
1371976 AATGATTGGGCGCCATAAACACGTTATCTTCATTGGGATACACAAAATTGACGCATTGGTTTTGC
1 AATGATTGGGCACCATAAACACGTTATCTTCATTGGGATGCACAAAATTGACGCATTGGTTTTGC
* * * * * **
1372041 AAGAAAAGCTCTTCTCGCCATGATATTCCTCATATTTTGAGCTT-GTATGTTAAATGAAACAGGC
66 AAGAAAAGCTTTTCTTGCCATGATTTTCCTTATATTTTGAG-TTCGTATGTTAGATGAAACAAAC
* * * *
1372105 ATGGATTCTTAAAATAATCTTCATTCTTTCCATGATTAGGC-AAC----CA-A--ATCCTTATTT
130 ATGGATTCTTATAACAATCTTCATTCTTTCTATGATTAGGCAAACAAAACACATTCTCCTT-TTT
* * * * ** **** * * ** *
1372162 -GGATACAAGATGTT-ATCGTTTTGAGTTCGTATG-TTAAA----TGAAACAAACATGGATGCTT
194 GGGATACACGATATTAAT-GCTTTGATTTC--ATGAGAAAAGTTTTTTCTCTACCAT-TTTCCTT
* ** * * * * *** *
1372220 ATAA-AAATCTTCATACTTTTCACGATTAGTAAAAACAAAACACATTCTCCTTTTTGGGATACAA
255 AGAATAAAAGTTTATAC-TTT-A-AATGAG-ACAAAC---ATGGA-TCTAC-------GA-A-AA
* * ** *
1372284 GATATTAATGC-TT-
303 AATCTCCATTCTTTC
* ** * * * * * * ** * **
1372297 --TGATT--TCATGAGAAA-A-GTTTTTTCTCTACCATT---TTCCTCAGAATAAAAG--TTTAT
1 AATGATTGGGCACCATAAACACG--TTATCT-T--CATTGGGATGCACAAAATTGACGCATTGGT
** ** ** * * ** * * * *
1372351 ACTTTAAATGAGACAAATATGATC-TACGAAAAAATCTCC--AT-TCTTTCAG-T-G-A--TTGG
61 --TTTGCA--AGA-AAAGCTTTTCTTGC-CATGATTTTCCTTATAT-TTTGAGTTCGTATGTTAG
***** * * * * **** * * * * * * * *
1372407 GCCCCATAAACA-CGTTATCTTTGTTGGGATGC-ACAATATTGGCGCATTGGTTATGC-AAGAAA
119 ATGAAACAAACATGGAT-TC-TTATAACAAT-CTTCATTCTT-TC-TA-TGATTAGGCAAACAAA
* * ***** *** ** * * * *
1372469 A-GC-TT-TTCTTGCCACGATTTTCCTTA-CAATTTGCGTTCGTATGTTAAATGAAACAAACAAT
178 ACACATTCTCCTTTTTGGGATACACGATATTAA--TGC-TTTG-AT-TT-CATG--A-GAA-AA-
* * * * ** * *
1372530 GATTTTTATAAAAATCTTCACACTTTTCTTGATTAGGCAACAAAAACACATTCTCCTTTTTGGGA
232 G-TTTTT-T----CTCTAC-CA-TTTTC---CTTA-G--A-ATAAA-AGTTTATAC--TTT---A
* * * * ** * * * **
1372595 TACACGATATCAATGCTTTAATTTCATGAGAAAAGT-T-TTTTC-TT-
276 -A-ATGAGA-CAA-ACATGGATCT-ACGA-AAAAATCTCCATTCTTTC
** * **** ** * * ** * * * * *
1372639 AGCCGCTTCCTTAGAATAAA-A-GTT-TTTTCCTT-AAATG-AGACAA---A--CA-TGGATCTA
1 A-ATGATTGGGCACCATAAACACGTTATCTTCATTGGGATGCACAAAATTGACGCATTGGTTTTG
* * * *** ** * **** * **
1372693 CGAA-AACATCTTCATTTTTTAAATGATTAGGCAC-CATA-AACAAGTTATCTTCAT-TGGGAT-
65 C-AAGAAAAGCTT--TTCTTGCCATGATT-TTC-CTTATATTTTGAG-T-TCGT-ATGTTAGATG
** * * * * * *** ** *
1372753 ACCCAAA-AGTGACGCATTGGTT-TCGCAAGAAAAGCTT--TTCTTGCCATGATTTTTCTTATAT
122 AAACAAACA-TG--G-ATT-CTTAT----A-ACAATCTTCATTCTTTCTATGATTAGGCAAACA-
**** * * * * * * * **
1372814 TTTGA-GTTCGT-ATGTTTGATGAAACAAACATGGATTCTTATAAATATCTTCAATCTTTCCAT-
176 AAACACATTC-TCCTTTTTG-GGATAC--AC---GA----TATTAAT-GCTTTGA--TTT-CATG
** ***** *** * * * ** * *
1372876 -GATTAG-GCAAACAAAACACATTATCCTTTTTGGGATACATGGTATTAATGCTTTGATTTCATG
226 AGAAAAGTTTTTTCTCTAC-CATTTTCC---TTAGAATA-AAAGT-TT-ATACTTT-A---AATG
* * ** * ** * *
1372939 AGA-AAAGTTTTTTCTCTACGATTTTCTTTGGAGTAAAAGT-T-TGTACTTTA
280 AGACAAA-------C-AT-GGA---TC-TACGA--AAAAATCTCCATTCTTTC
** * * * * * *
1372989 AATGAGACAAACGTGAATCTACAAAAAAAC-TCCTTTCTTTCAAT--GATTGGGCACCATAAACA
1 AAT--G---ATTGGGCA-C--CATAAACACGT--TATC-TTCATTGGGA-T--GCA-C---AA-A
** * *** * * * * * *
1373051 CATT-ATTTTCATTAGGATGCACAATATTGACGCTTTGGTTTTG-AAAGAAAAGCTTTCTTTGCC
47 -ATTGA--CGCATT-GGTTTTGCAAGA--AAAGCTTT--TCTTGCCATG---A----T-TTT-CC
* * * * * *
1373114 ATGATTTTCCTCATATTTTGAATTTGCATGTTAAATGAAACAAACAAGGATTCTTGA-AATAA-C
95 -----TT-----ATATTTTGAGTTCGTATGTTAGATGAAACAAACATGGATTCTT-ATAACAATC
* * * * * ** *
1373177 CTCATTCTGTCCATGCTTAGGCAACCAAAATGCGTTCTCCTTATTT-GGATACACGATATTAATG
149 TTCATTCTTTCTATGATTAGGCAAACAAAACACATTCTCCTT-TTTGGGATACACGATATTAATG
* * * *
1373241 CTTTGATTTAATAAGAAAAGTTTTTTTCTCAATCATTTTCCTTAGAATAAAAGTTTATACTTTAA
213 CTTTGATTTCATGAGAAAAG-TTTTTTCTCTACCATTTTCCTTAGAATAAAAGTTTATACTTTAA
* * * * *
1373306 AAGAGACAAACGTGGATCTACAAAAAAACCACCATTCTTTC
277 ATGAGACAAACATGGATCTACGAAAAAATCTCCATTCTTTC
* * * * * ** * * *
1373347 ACTGATTGGGCACTACAAA-A-ATTGA--TGCATTGGTTTCGCA-AGAAA--AACTCA----TCT
1 AATGATTGGGCACCATAAACACGTT-ATCTTCATTGGGAT-GCACA-AAATTGACGCATTGGTTT
* ** * * * * * ** *
1373401 TGCCATG---A--TTTTCCTT---AT-ATTTTGAGTTCGTATGTT-AGAT-GAAAGAAACATG--
63 TG-CAAGAAAAGCTTTT-CTTGCCATGATTTT-CCTT-ATATTTTGAGTTCGTATGTTAGATGAA
* * * * *
1373453 -GATAC-T-TATAAC--AA-----TCTTCATTCTTTC-ATTGATTAGGCAAACAAAACACATTCT
124 ACAAACATGGAT-TCTTATAACAATCTTCATTCTTTCTA-TGATTAGGCAAACAAAACACATTCT
1373507 CCTTTTTGGGATACACGATATTAATGCTTTGATTTCATGAGAAAAGTTTTTTCTCTACCATTTTC
187 CCTTTTTGGGATACACGATATTAATGCTTTGATTTCATGAGAAAAGTTTTTTCTCTACCATTTTC
* * * *
1373572 CTCAGAATAAAAGCTTATACTTTAAATGAGACAAACATGGATCTACAAAAAAAATCTACATTCTT
252 CTTAGAATAAAAGTTTATACTTTAAATGAGACAAACATGGATCTAC-GAAAAAATCTCCATTCTT
1373637 TC
316 TC
* *
1373639 AATGATTGGGCACCATAAACACGTTATCTTCATTGGGATACACAAAATTGATGCATTGGTTTTGC
1 AATGATTGGGCACCATAAACACGTTATCTTCATTGGGATGCACAAAATTGACGCATTGGTTTTGC
* ** *
1373704 AAGAAAACCTCATCTTGCCATGATTTTCCTTATATTTTGACTTCGTATGTTAGATGAAACAAACA
66 AAGAAAAGCTTTTCTTGCCATGATTTTCCTTATATTTTGAGTTCGTATGTTAGATGAAACAAACA
* * *
1373769 TGGATTCTTATAACAACCTTCATTCTTT-TCGTGATTAGGCAAACAAAAGACATTCTCCTTTTTG
131 TGGATTCTTATAACAATCTTCATTCTTTCT-ATGATTAGGCAAACAAAACACATTCTCCTTTTTG
* *
1373833 GGATACATGATATTAATGCTTTGATTTCATGAGAAAAGTTTTTTCACTACCATTTTCCTTAGAAT
195 GGATACACGATATTAATGCTTTGATTTCATGAGAAAAGTTTTTTCTCTACCATTTTCCTTAGAAT
* * *
1373898 AAAAGTTTAGACTTTAATTGAGACAAACATGGATCTACGAAAAAATCTCGATTCTTTC
260 AAAAGTTTATACTTTAAATGAGACAAACATGGATCTACGAAAAAATCTCCATTCTTTC
* * * * *
1373956 ATTGATTGGGCCCCATAAACACGTTATCTTCATTGCGTTGCACAATATTGACGCATTGGTTTTGC
1 AATGATTGGGCACCATAAACACGTTATCTTCATTGGGATGCACAAAATTGACGCATTGGTTTTGC
* * * *
1374021 AAGAAAAGCTTTCCTTGCCACGATTTTCCTTATCTTTTGAGTTCGTATGTTAAATGAAACAAGA-
66 AAGAAAAGCTTTTCTTGCCATGATTTTCCTTATATTTTGAGTTCGTATGTTAGATGAAACAA-AC
* * * *
1374085 ATGGATTCTTATAATAATCTTCATTCTTTCCATGCTTAGGCAACCAAAACACATTCTCCTTTTTG
130 ATGGATTCTTATAACAATCTTCATTCTTTCTATGATTAGGCAAACAAAACACATTCTCCTTTTTG
* * * ** * *
1374150 GGGTACATGATATTAATGCTTTGATTTCACGAGAAAAGTTTTTTCTCTATGATTTTCCTTGGAGT
195 GGATACACGATATTAATGCTTTGATTTCATGAGAAAAGTTTTTTCTCTACCATTTTCCTTAGAAT
* * *
1374215 AAAAGTTTATACCTTAAATGAGACAAACGTGGATCTACGAAAAAATCTCCATTCATTC
260 AAAAGTTTATACTTTAAATGAGACAAACATGGATCTACGAAAAAATCTCCATTCTTTC
* * * * * *
1374273 AATGATTGGGCACCATAAACACATTATCTTCGTTGGGATGCACAATATTGATGCAATGGTTTTGA
1 AATGATTGGGCACCATAAACACGTTATCTTCATTGGGATGCACAAAATTGACGCATTGGTTTTGC
* * * * * * * *
1374338 AAGGAAAGCTTTCCTTGCCACGATTTTCCTCATATTTTGAATTTGCAT-TTAAATGAAACAAACA
66 AAGAAAAGCTTTTCTTGCCATGATTTTCCTTATATTTTGAGTTCGTATGTTAGATGAAACAAACA
* * ** * * *
1374402 TGGATTCTTATAACAATTTTCATTCTTTCCATGCCTAGGCAACCAAAACGCGTTCTCCTTATTT-
131 TGGATTCTTATAACAATCTTCATTCTTTCTATGATTAGGCAAACAAAACACATTCTCCTT-TTTG
* * * * * *
1374466 AGATACACGATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTTCTCAATCGTTTTCCTCAGAA
195 GGATACACGATATTAATGCTTTGATTTCATGAGAAAAG-TTTTTTCTCTACCATTTTCCTTAGAA
* *
1374531 CAAAAGTTTATACTTTAAATGAGACAAATATGGATCTACG-AAAAATCTCCATTCTTT-
259 TAAAAGTTTATACTTTAAATGAGACAAACATGGATCTACGAAAAAATCTCCATTCTTTC
* * * * *
1374588 AGTGATTGGGCCCCATAAACA-GTTATCTTCATTTGGATGCACAATATTAACGCATTGGTTTTGC
1 AATGATTGGGCACCATAAACACGTTATCTTCATTGGGATGCACAAAATTGACGCATTGGTTTTGC
* * * * * * * * **
1374652 ACGAAAAGCTTTCCCTCCCACGATTTTCCTCATATTTTGAGTCCGTATGTTAAATGAAACAAGTA
66 AAGAAAAGCTTTTCTTGCCATGATTTTCCTTATATTTTGAGTTCGTATGTTAGATGAAACAAACA
* ** * * * *
1374717 TTGATTCTTATAGTAATCTTCATTCTTTCCATGCTTAGGCAACCAAAACGCATTCTCCTTATTT-
131 TGGATTCTTATAACAATCTTCATTCTTTCTATGATTAGGCAAACAAAACACATTCTCCTT-TTTG
* * * * * * * *
1374781 GGATGCACGATATTAATGCTTTGATTTTATAAGAAAAGTTTTTTTCTCAATCGTTATCCTCAGAA
195 GGATACACGATATTAATGCTTTGATTTCATGAGAAAAG-TTTTTTCTCTACCATTTTCCTTAGAA
*
1374846 TAAAAGTTTATACTTTAAATGAGACAAACACGGATCTACGAAAAAATCTCCATTCTTTC
259 TAAAAGTTTATACTTTAAATGAGACAAACATGGATCTACGAAAAAATCTCCATTCTTTC
* * *
1374905 AATGATTGGGCACCACAAACACGTTATCTTCATTGGGATACACAAAATTGATGCATTGGTTTTGC
1 AATGATTGGGCACCATAAACACGTTATCTTCATTGGGATGCACAAAATTGACGCATTGGTTTTGC
* * * * * * * * * *
1374970 CAGAAAAACTCTTCTTACCATGATTTTCTTTATATTTT-ATGCTCGTTTATTAAATGAAATAAAC
66 AAGAAAAGCTTTTCTTGCCATGATTTTCCTTATATTTTGA-GTTCGTATGTTAGATGAAACAAAC
1375034 ATGGATTCTTATAACAATCTTCATTCTTTCCT-TGATTAGGCAAACAAAACACATTC-CCGTTTT
130 ATGGATTCTTATAACAATCTTCATTCTTT-CTATGATTAGGCAAACAAAACACATTCTCC-TTTT
* * * *
1375097 GGGGATACACGATATTAATGCCTTGATTTCATAAGAAAAGTTTTTTCTCTACCATTTTCCTCA-A
193 TGGGATACACGATATTAATGCTTTGATTTCATGAGAAAAGTTTTTTCTCTACCATTTTCCTTAGA
* * **
1375161 ACTAAAAGTTTATAATTTAAATGAGACAAACATGGATCTACGCAAAAATCAACATTCTTTC
258 A-TAAAAGTTTATACTTTAAATGAGACAAACATGGATCTACGAAAAAATCTCCATTCTTTC
* * * * *
1375222 AATGATTGGGGACCATAAACACGTTATCTTCATTGGGATACAGAAAATTGATGCATTGGATTTGC
1 AATGATTGGGCACCATAAACACGTTATCTTCATTGGGATGCACAAAATTGACGCATTGGTTTTGC
1375287 AAGAAAAGCTTTTCTTGCCATGATTTTCCTTATATTTTGAGTTCGTATGTTAGATGAAACAAACA
66 AAGAAAAGCTTTTCTTGCCATGATTTTCCTTATATTTTGAGTTCGTATGTTAGATGAAACAAACA
* * * *
1375352 TTGATTCTTATAACAACCTTCATTCTTT-TCGTGATTAGGCAAACAAAAGACATTCTCCTTTTTG
131 TGGATTCTTATAACAATCTTCATTCTTTCT-ATGATTAGGCAAACAAAACACATTCTCCTTTTTG
* * * * * *
1375416 GGAAACATGATAATAATCCTTTGATTTCATGAGAAAAGGTTTTTCTCTACCGTTTTCCTTAGAAT
195 GGATACACGATATTAATGCTTTGATTTCATGAGAAAAGTTTTTTCTCTACCATTTTCCTTAGAAT
* *
1375481 AAAAGTTGATATTTTAAATGAGACAAACATGGATCTACGAAAAAATCTCCATTCTTTC
260 AAAAGTTTATACTTTAAATGAGACAAACATGGATCTACGAAAAAATCTCCATTCTTTC
* * * * * ** *
1375539 AGTGGTTGGGCCCCATAAACACTTTATCTTCATTCGGATGCACAATGTTGGCGCATTGGTTTTGC
1 AATGATTGGGCACCATAAACACGTTATCTTCATTGGGATGCACAAAATTGACGCATTGGTTTTGC
* *
1375604 AAGAAATGCTTTTCTTGCCACGATTTTCCTTATATTTTGAGTTCGTATG-T-GATGAAA
66 AAGAAAAGCTTTTCTTGCCATGATTTTCCTTATATTTTGAGTTCGTATGTTAGATGAAA
1375661 ACCAAGGAAG
Statistics
Matches: 15132, Mismatches: 2251, Indels: 1068
0.82 0.12 0.06
Matches are distributed among these distances:
291 63 0.00
292 103 0.01
293 2 0.00
294 7 0.00
295 10 0.00
296 3 0.00
297 2 0.00
298 4 0.00
299 130 0.01
300 376 0.02
301 5 0.00
302 11 0.00
303 5 0.00
304 8 0.00
305 6 0.00
306 23 0.00
307 21 0.00
308 5 0.00
309 7 0.00
310 38 0.00
311 5 0.00
312 10 0.00
313 213 0.01
314 144 0.01
315 384 0.03
316 1501 0.10
317 8489 0.56
318 3059 0.20
319 28 0.00
320 15 0.00
321 11 0.00
322 5 0.00
323 11 0.00
324 6 0.00
325 5 0.00
328 1 0.00
329 2 0.00
332 2 0.00
333 4 0.00
334 1 0.00
335 7 0.00
336 10 0.00
337 6 0.00
338 8 0.00
339 8 0.00
340 8 0.00
341 9 0.00
342 11 0.00
343 15 0.00
344 16 0.00
345 22 0.00
346 9 0.00
347 16 0.00
348 17 0.00
349 9 0.00
350 13 0.00
351 8 0.00
352 4 0.00
353 7 0.00
354 5 0.00
355 1 0.00
356 5 0.00
357 5 0.00
358 19 0.00
359 6 0.00
360 3 0.00
361 2 0.00
362 7 0.00
363 1 0.00
364 2 0.00
365 1 0.00
369 1 0.00
370 6 0.00
371 4 0.00
373 2 0.00
374 6 0.00
375 2 0.00
376 3 0.00
377 10 0.00
378 6 0.00
379 12 0.00
380 14 0.00
381 16 0.00
383 1 0.00
385 2 0.00
387 2 0.00
388 4 0.00
389 2 0.00
390 8 0.00
391 19 0.00
392 3 0.00
394 2 0.00
395 3 0.00
396 3 0.00
397 4 0.00
398 10 0.00
399 2 0.00
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (317 bp):
AATGATTGGGCACCATAAACACGTTATCTTCATTGGGATGCACAAAATTGACGCATTGGTTTTGC
AAGAAAAGCTTTTCTTGCCATGATTTTCCTTATATTTTGAGTTCGTATGTTAGATGAAACAAACA
TGGATTCTTATAACAATCTTCATTCTTTCTATGATTAGGCAAACAAAACACATTCTCCTTTTTGG
GATACACGATATTAATGCTTTGATTTCATGAGAAAAGTTTTTTCTCTACCATTTTCCTTAGAATA
AAAGTTTATACTTTAAATGAGACAAACATGGATCTACGAAAAAATCTCCATTCTTTC
Found at i:1371962 original size:318 final size:318
Alignment explanation
Indices: 1370861--1372152 Score: 1592
Period size: 318 Copynumber: 4.1 Consensus size: 318
1370851 ACAAGCATTG
* * * * * *
1370861 ATTCTTTCCACGCTTAGCCAACCAAAACG-CGTTCTCCTTTTTTGGATATACGATATTAATGCTT
1 ATTCTTTCCATGATTAGGCAACCAAAA-GACATTCTCCTTTTTGGGATACACGATATTAATGCTT
* * *
1370925 TGATCTCATAAGAAAAGTTTTTTTCTCAATCGTTTTCCTTAGAATAAAAGTTTACACTTTAAATG
65 TGATCTCATAAGAAAAG-TTTTTTCTCAACCATTTTCCTTAGAATAAAAGTTTATACTTTAAATG
* * *
1370990 AAACAAACATGGATCTACGAAAAAATCACCATTCATTCAATGATTAGGCACCATAAACACGTTAT
129 AAACAAACATGGATCTACGAAAAAATCACCATTCTTTCAATGATTGGGCCCCATAAACACGTTAT
* * * * *
1371055 CTTCATTGGGATACAGAAAATTGGCGCATTGGTTTTGCAAGAAAAGCTTTTCTTGCCACGATTTT
194 CTTCATTGGGATACACAAAATTGACGCATTGGTTTTGCAAGAAAACCTTTCCTTGCCACGATATT
* * * *
1371120 CCTTATATTTTAAGTTTC-TATGTTAGATGAAACAAACATTGATTCTTATAACAA-CGTTC
259 CCTTATATTTTGAGCTTCGTATGTTAAATGAAACAAACATGGATTCTTATAACAATC-TTC
* * * * * *
1371179 ATTTTTTTCGTGATTAGGCAAACAAAAGACATTCTCCTTTTTGGGAAACATGATATTAATGCTTT
1 ATTCTTTCCATGATTAGGCAACCAAAAGACATTCTCCTTTTTGGGATACACGATATTAATGCTTT
* * * * *
1371244 GATTTCATGAGAAAAGGTTTTTCTCTACCGTTTTCCTTAGAATAAAAG-TTATACTTTAAATGAA
66 GATCTCATAAGAAAAGTTTTTTCTCAACCATTTTCCTTAGAATAAAAGTTTATACTTTAAATGAA
* * * *** * *
1371308 GCAACCATGGATCTACGAAAAAATCTCCATTCTTTTTGTG-GTGGGCCCCATAAACACTTTATCT
131 ACAAACATGGATCTACGAAAAAATCACCATTCTTTCAATGATTGGGCCCCATAAACACGTTATCT
** * ** * *
1371372 T--TTTAGATGCACAATGTTGGCGCATTGGTTTTGCAAGAAAACCTTTTCC-TGCCACGATTTTC
196 TCATTGGGATACACAAAATTGACGCATTGGTTTTGCAAGAAAACC-TTTCCTTGCCACGATATTC
* * * *
1371434 CTTATTTTTTG-GGTTCGTATGTTAGATGAAACAAACATGGATTCTTATAACAACCTTC
260 CTTATATTTTGAGCTTCGTATGTTAAATGAAACAAACATGGATTCTTATAACAATCTTC
* ** * **
1371492 ATTCCTTT-CGTGATTAGGCAAAGAAAAGACATTCTCCTTTTTGGGATGCAAAATATTAATTG-T
1 ATT-CTTTCCATGATTAGGCAACCAAAAGACATTCTCCTTTTTGGGATACACGATATTAA-TGCT
* * * *
1371555 TTGATTTCATGAGAAAAGTTTTTTCTCTACCATTTTCCTTAGTATAAAAGTTTATACTTTAAATG
64 TTGATCTCATAAGAAAAGTTTTTTCTCAACCATTTTCCTTAGAATAAAAGTTTATACTTTAAATG
* * *
1371620 AAACAAACATGGATCTATGAAAAAATCTCCATTCTTTCAGTGATTGGGCCCCATAAACACGTTAT
129 AAACAAACATGGATCTACGAAAAAATCACCATTCTTTCAATGATTGGGCCCCATAAACACGTTAT
* * *
1371685 CTTCATTGGGATGCACAATATTGACGCATTGGTTTTGCAAGAAAACCTTTCCTTGCCAGGATATT
194 CTTCATTGGGATACACAAAATTGACGCATTGGTTTTGCAAGAAAACCTTTCCTTGCCACGATATT
* * * * *
1371750 CCTCT-TACTTTGAG-TTCGTATGTTAAATGAAGCAAGCATTGATTCTTATAATAATCTTC
259 CCT-TATATTTTGAGCTTCGTATGTTAAATGAAACAAACATGGATTCTTATAACAATCTTC
* *
1371809 ATTCTTTCCATGCTTAGGCAACCAAAACG-CGTTCTCCTTATTT-GGATACACGATATTAATGCT
1 ATTCTTTCCATGATTAGGCAACCAAAA-GACATTCTCCTT-TTTGGGATACACGATATTAATGCT
* *
1371872 TTGATCTCATAAGAAAAGTTTTTTTCTCAATCATTTTCTTTAGAATAAAAGTTTATACTTTAAAT
64 TTGATCTCATAAGAAAAG-TTTTTTCTCAACCATTTTCCTTAGAATAAAAGTTTATACTTTAAAT
* *
1371937 GAAACAAACATGGATCTACGAAAAAATCACCAATCTTTCAATGATTGGGCGCCATAAACACGTTA
128 GAAACAAACATGGATCTACGAAAAAATCACCATTCTTTCAATGATTGGGCCCCATAAACACGTTA
* * *
1372002 TCTTCATTGGGATACACAAAATTGACGCATTGGTTTTGCAAGAAAAGCTCTT-CTCGCCATGATA
193 TCTTCATTGGGATACACAAAATTGACGCATTGGTTTTGCAAGAAAACCT-TTCCTTGCCACGATA
* ** * *
1372066 TTCCTCATATTTTGAGCTT-GTATGTTAAATGAAACAGGCATGGATTCTTAAAATAATCTTC
257 TTCCTTATATTTTGAGCTTCGTATGTTAAATGAAACAAACATGGATTCTTATAACAATCTTC
1372127 ATTCTTTCCATGATTAGGCAACCAAA
1 ATTCTTTCCATGATTAGGCAACCAAA
1372153 TCCTTATTTG
Statistics
Matches: 851, Mismatches: 102, Indels: 42
0.86 0.10 0.04
Matches are distributed among these distances:
312 4 0.00
313 192 0.23
314 61 0.07
315 44 0.05
316 59 0.07
317 182 0.21
318 305 0.36
319 4 0.00
ACGTcount: A:0.32, C:0.18, G:0.15, T:0.36
Consensus pattern (318 bp):
ATTCTTTCCATGATTAGGCAACCAAAAGACATTCTCCTTTTTGGGATACACGATATTAATGCTTT
GATCTCATAAGAAAAGTTTTTTCTCAACCATTTTCCTTAGAATAAAAGTTTATACTTTAAATGAA
ACAAACATGGATCTACGAAAAAATCACCATTCTTTCAATGATTGGGCCCCATAAACACGTTATCT
TCATTGGGATACACAAAATTGACGCATTGGTTTTGCAAGAAAACCTTTCCTTGCCACGATATTCC
TTATATTTTGAGCTTCGTATGTTAAATGAAACAAACATGGATTCTTATAACAATCTTC
Found at i:1373709 original size:159 final size:157
Alignment explanation
Indices: 1373446--1375609 Score: 940
Period size: 159 Copynumber: 13.7 Consensus size: 157
1373436 TAGATGAAAG
* * * * * * *
1373446 AAACATGGATACT-TATAACAATCTTCATTCTTTCATTGATTAGGCAAACAAAACACATTCTCCT
1 AAACATGGAT-CTACATAAAAATCTTCATTCTTTCAATGATTGGGC-ACCAAAACACGTTAT-CT
* * * *
1373510 T-TTTGGGATACACGATATTAATGC-TTTGATTT-CATGAGAAAAGTTTTTTCTCTACCATTTTC
63 TCATTGGGATACACAATATTAATGCATTGGTTTTGCA--AGAAAAGTTTTTTCTCTACCATTTTC
*
1373572 CTCAGAATAAAAGCTTATACTTTAAATGAGAC
126 CTCAGAATAAAAGTTTATACTTTAAATGAGAC
* *
1373604 AAACATGGATCTACAAAAAAAATCTACATTCTTTCAATGATTGGGCACCATAAACACGTTATCTT
1 AAACATGGATCTAC-ATAAAAATCTTCATTCTTTCAATGATTGGGCACCA-AAACACGTTATCTT
* * * * * **
1373669 CATTGGGATACACAAAATTGATGCATTGGTTTTGCAAGAAAACCTCATCTTGC-C-ATGATTTTC
64 CATTGGGATACACAATATTAATGCATTGGTTTTGCAAGAAAA-GT--TTTTTCTCTACCATTTTC
* * * *** * ** * *
1373732 CTTATATTTTGACTTCGTA-TGTTAGATGAAAC
126 CTCAGAATAAAAGTTTATACT-TTAAATGAGAC
* * * * * * * * *
1373764 AAACATGGATTCT-TATAACAACCTTCATTCTTTTC-GTGATTAGGCAAACAAAAGACATTCTCC
1 AAACATGGA-TCTACATAAAAATCTTCATTC-TTTCAATGATTGGGC-ACCAAAACACGTTAT-C
* ** * * *
1373827 TT-TTTGGGATACATGATATTAATGC-TTTGATTT-CATGAGAAAAGTTTTTTCACTACCATTTT
62 TTCATTGGGATACACAATATTAATGCATTGGTTTTGCA--AGAAAAGTTTTTTCTCTACCATTTT
* * *
1373889 CCTTAGAATAAAAGTTTAGACTTTAATTGAGAC
125 CCTCAGAATAAAAGTTTATACTTTAAATGAGAC
* *
1373922 AAACATGGATCTACGA-AAAAATC-TCGATTCTTTCATTGATTGGGCCCCATAAACACGTTATCT
1 AAACATGGATCTAC-ATAAAAATCTTC-ATTCTTTCAATGATTGGGCACCA-AAACACGTTATCT
* * * * * * *
1373985 TCATTGCGTTGCACAATATTGACGCATTGGTTTTGCAAGAAAAGCTTTCCTTGC-C-ACGATTTT
63 TCATTGGGATACACAATATTAATGCATTGGTTTTGCAAGAAAAG-TTT--TTTCTCTACCATTTT
* *** *** ** *
1374048 CCTTATCTTTTGAGTTCGTA-TGTTAAATGAAAC
125 CCTCAGAATAAAAGTTTATACT-TTAAATGAGAC
* * * * * * *
1374081 AAGA-ATGGATTCT-TATAATAATCTTCATTCTTTCCATGCTTAGGCAACCAAAACACATTCTCC
1 AA-ACATGGA-TCTACATAAAAATCTTCATTCTTTCAATGATTGGGC-ACCAAAACACGTTAT-C
* * ** * * ** * **
1374144 TT-TTTGGGGTACATGATATTAATGCTTTGATTTCACGAGAAAAGTTTTTTCTCTATGATTTTCC
62 TTCATTGGGATACACAATATTAATGCATTGGTTTTGCAAGAAAAGTTTTTTCTCTACCATTTTCC
** * *
1374208 TTGGAGTAAAAGTTTATACCTTAAATGAGAC
127 TCAGAATAAAAGTTTATACTTTAAATGAGAC
* * * *
1374239 AAACGTGGATCTACGA-AAAAATCTCCATTCATTCAATGATTGGGCACCATAAACACATTATCTT
1 AAACATGGATCTAC-ATAAAAATCTTCATTCTTTCAATGATTGGGCACCA-AAACACGTTATCTT
* * * * * * * *
1374303 CGTTGGGATGCACAATATTGATGCAATGGTTTTGAAAGGAAAGCTTTCCTTGC-C-ACGATTTTC
64 CATTGGGATACACAATATTAATGCATTGGTTTTGCAAGAAAAG-TTT--TTTCTCTACCATTTTC
* * ** ** *
1374366 CTCATATTTTGAA-TTTGCA-TTTAAATGAAAC
126 CTCAGA-ATAAAAGTTTATACTTTAAATGAGAC
* * * * ** * * *
1374397 AAACATGGATTCT-TATAACAATTTTCATTCTTTCCATGCCTAGGCAACCAAAACGCGTTCTCCT
1 AAACATGGA-TCTACATAAAAATCTTCATTCTTTCAATGATTGGGC-ACCAAAACACGTTAT-CT
** * * * *** * * *
1374461 T-ATTTAGATACACGATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTTCTCAATCGTTTTCC
63 TCATTGGGATACACAATATTAATGCATTGGTTTTGCAAGAAAAG-TTTTTTCTCTACCATTTTCC
*
1374525 TCAGAACAAAAGTTTATACTTTAAATGAGAC
127 TCAGAATAAAAGTTTATACTTTAAATGAGAC
* * * * *
1374556 AAATATGGATCTAC-GAAAAATCTCCATTCTTT-AGTGATTGGGCCCCATAAACA-GTTATCTTC
1 AAACATGGATCTACATAAAAATCTTCATTCTTTCAATGATTGGGCACCA-AAACACGTTATCTTC
* * * * * ** * *
1374618 ATTTGGATGCACAATATTAACGCATTGGTTTTGCACGAAAAGCTTTCCCTCCCACGATTTTCCTC
65 ATTGGGATACACAATATTAATGCATTGGTTTTGCAAGAAAAGTTTTTTCT-CTACCATTTTCCTC
* * *** *** *
1374683 ATATTTTGAGTCCGTA-TGTTAAATGAAAC
129 AGAATAAAAGTTTATACT-TTAAATGAGAC
** * * ** * * * * * *
1374712 AAGTATTGATTCT-TATAGTAATCTTCATTCTTTCCATGCTTAGGCAACCAAAACGCATTCTCCT
1 AAACATGGA-TCTACATAAAAATCTTCATTCTTTCAATGATTGGGC-ACCAAAACACGTTAT-CT
* * * * * ** * * * *
1374776 T-ATTTGGATGCACGATATTAATGCTTTGATTTTATAAGAAAAGTTTTTTTCTCAATCGTTATCC
63 TCATTGGGATACACAATATTAATGCATTGGTTTTGCAAGAAAAG-TTTTTTCTCTACCATTTTCC
1374840 TCAGAATAAAAGTTTATACTTTAAATGAGAC
127 TCAGAATAAAAGTTTATACTTTAAATGAGAC
* *
1374871 AAACACGGATCTACGA-AAAAATCTCCATTCTTTCAATGATTGGGCACCACAAACACGTTATCTT
1 AAACATGGATCTAC-ATAAAAATCTTCATTCTTTCAATGATTGGGCACCA-AAACACGTTATCTT
* * * ** *
1374935 CATTGGGATACACAAAATTGATGCATTGGTTTTGCCAGAAAA-ACTCTTCT-TACCATGATTTTC
64 CATTGGGATACACAATATTAATGCATTGGTTTTGCAAGAAAAGTTTTTTCTCTACC---ATTTTC
* * * * ** * * *
1374998 TTTATATTTTATGCTCGTT-TA--TTAAATGAAAT
126 CTCAGAATAAAAG-T--TTATACTTTAAATGAGAC
* * ** * * * **
1375030 AAACATGGATTCT-TATAACAATCTTCATTCTTTCCTTGATTAGGCAAACAAAACACATTCCCGT
1 AAACATGGA-TCTACATAAAAATCTTCATTCTTTCAATGATTGGGC-ACCAAAACACGTTATC-T
* * * ***
1375094 T--TTGGGGATACACGATATTAATGCCTTGATTTCATAAGAAAAGTTTTTTCTCTACCATTTTCC
63 TCATT-GGGATACACAATATTAATGCATTGGTTTTGCAAGAAAAGTTTTTTCTCTACCATTTTCC
*
1375157 TCA-AACTAAAAGTTTATAATTTAAATGAGAC
127 TCAGAA-TAAAAGTTTATACTTTAAATGAGAC
** ** *
1375188 AAACATGGATCTACGCAAAAATCAACATTCTTTCAATGATTGGGGACCATAAACACGTTATCTTC
1 AAACATGGATCTACATAAAAATCTTCATTCTTTCAATGATTGGGCACCA-AAACACGTTATCTTC
* * * * **
1375253 ATTGGGATACAGAAAATTGATGCATTGGATTTGCAAGAAAAGCTTTTCTTGC-C-ATGATTTTCC
65 ATTGGGATACACAATATTAATGCATTGGTTTTGCAAGAAAAG-TTTT-TT-CTCTACCATTTTCC
* * * *** ** * *
1375316 TTATATTTTGAGTTCGTA-TGTTAGATGAAAC
127 TCAGAATAAAAGTTTATACT-TTAAATGAGAC
* * * * * * * * * *
1375347 AAACATTGATTCT-TATAACAACCTTCATTCTTTTC-GTGATTAGGCAAACAAAAGACATTCTCC
1 AAACATGGA-TCTACATAAAAATCTTCATTC-TTTCAATGATTGGGC-ACCAAAACACGTTAT-C
* * ** * * * * * *
1375410 TT-TTTGGGAAACATGATAATAAT-CCTTTGATTT-CATGAGAAAAGGTTTTTCTCTACCGTTTT
62 TTCATTGGGATACACAATATTAATGCATTGGTTTTGCA--AGAAAAGTTTTTTCTCTACCATTTT
* * *
1375472 CCTTAGAATAAAAGTTGATATTTTAAATGAGAC
125 CCTCAGAATAAAAGTTTATACTTTAAATGAGAC
* * * * *
1375505 AAACATGGATCTACGA-AAAAATCTCCATTCTTTCAGTGGTTGGGCCCCATAAACACTTTATCTT
1 AAACATGGATCTAC-ATAAAAATCTTCATTCTTTCAATGATTGGGCACCA-AAACACGTTATCTT
* * * ***
1375569 CATTCGGATGCACAATGTTGGCGCATTGGTTTTGCAAGAAA
64 CATTGGGATACACAATATTAATGCATTGGTTTTGCAAGAAA
1375610 TGCTTTTCTT
Statistics
Matches: 1432, Mismatches: 458, Indels: 232
0.67 0.22 0.11
Matches are distributed among these distances:
155 11 0.01
156 88 0.06
157 94 0.07
158 517 0.36
159 584 0.41
160 113 0.08
161 19 0.01
162 6 0.00
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (157 bp):
AAACATGGATCTACATAAAAATCTTCATTCTTTCAATGATTGGGCACCAAAACACGTTATCTTCA
TTGGGATACACAATATTAATGCATTGGTTTTGCAAGAAAAGTTTTTTCTCTACCATTTTCCTCAG
AATAAAAGTTTATACTTTAAATGAGAC
Found at i:1377283 original size:42 final size:42
Alignment explanation
Indices: 1377226--1377335 Score: 175
Period size: 42 Copynumber: 2.6 Consensus size: 42
1377216 AAGAGAAAGA
* * *
1377226 AGAGAGAGGAAGGATGATAGGAGGAGAGACAGGAGAGATAGT
1 AGAGAGAAGAGGGATGATAGGAGGAGAGACAGGAGAGATAAT
*
1377268 AGAGATAAGAGGGATGATAGGAGGAGAGACAGGAGAGATAAT
1 AGAGAGAAGAGGGATGATAGGAGGAGAGACAGGAGAGATAAT
*
1377310 AGAGAGAGGAGGGATGATAGGAGGAG
1 AGAGAGAAGAGGGATGATAGGAGGAG
1377336 GAGAGAAGAA
Statistics
Matches: 62, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 62 1.00
ACGTcount: A:0.43, C:0.02, G:0.45, T:0.10
Consensus pattern (42 bp):
AGAGAGAAGAGGGATGATAGGAGGAGAGACAGGAGAGATAAT
Found at i:1377319 original size:18 final size:18
Alignment explanation
Indices: 1377292--1377341 Score: 57
Period size: 18 Copynumber: 2.8 Consensus size: 18
1377282 TGATAGGAGG
*
1377292 AGAGACAGGAGAGATAAT
1 AGAGAGAGGAGAGATAAT
* *
1377310 AGAGAGAGGAGGGATGAT
1 AGAGAGAGGAGAGATAAT
1377328 AG-GAGGAGGAGAGA
1 AGAGA-GAGGAGAGA
1377342 AGAAGATGGA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
17 2 0.07
18 25 0.93
ACGTcount: A:0.44, C:0.02, G:0.46, T:0.08
Consensus pattern (18 bp):
AGAGAGAGGAGAGATAAT
Found at i:1383229 original size:317 final size:317
Alignment explanation
Indices: 1382314--1385237 Score: 3617
Period size: 317 Copynumber: 9.3 Consensus size: 317
1382304 TTGTCATCAA
* * * * * *
1382314 TATGTTAGATGAAACAAACATGGAATCTTATAACAACCTTCATTCTTTTCGTGATTACGCAAACA
1 TATGTTAGATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTCCATGATTAGGCAAACA
* * * *
1382379 AAAGACATTCTCCTTTTTGGGACACACAATATTAATGCTTTGATTTCATGAGAAAAGCTTTTTCT
66 AAACACATTCTCCTTTTTGGGATACACGATATTAATGCTTTGATTTCATGAGAAAAGTTTTTTCT
* * * *
1382444 CTACCATTTTCCTTAGAATAAAAGTTTATACTTTAAATGTGACGAACATGGGTCTACGAAAAAAT
131 CAACCATTTTCCTTAGAATAAAAGTTTATACTTTAAATGAGACAAACATGGATCTACGAAAAAAT
* * * * *
1382509 CTTCATTCTTTCAATGATTGGGCCCCATAAACATGTTATCTTCATTTGGATGCACAATATTGACG
196 CTACATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTGGGATACACAATATTGACG
*
1382574 CATTGGTTTTGCAAGAAAAGCTTTCCTTGCCATGATATTCCTCT-TATTTTGAGTTCG
261 CATTGGTTTTGCAAGAAAAGCTTTCCTTGCCATGATTTTCCT-TATATTTTGAGTTCG
* * * * *
1382631 TATGTTAAATGAAACAAGCATGGATTCTTATAATAATCTTCATTATTTCCATGCTTAGGCAACCA
1 TATGTTAGATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTCCATGATTAGGCAAACA
* * * * * *
1382696 AAACGCGTTCTCCTTATTT-AGATACACGATATTAATGATTTGATCTCATAAGAAAAGTTTTTTT
66 AAACACATTCTCCTT-TTTGGGATACACGATATTAATGCTTTGATTTCATGAGAAAAG-TTTTTT
*** *
1382760 CTCAATTGTTTTCCTTAGAATAAAAGTTTATACTTTAAATGAAACAAACATGGATCTACGAAAAA
129 CTCAACCATTTTCCTTAGAATAAAAGTTTATACTTTAAATGAGACAAACATGGATCTACGAAAAA
* * * * *
1382825 AT-GACCGTTCTTTCAATGATTAGGCACCATAAACACGTTATCTTCATTGGTATACACAAAATTG
194 ATCTA-CATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTGGGATACACAATATTG
*
1382889 ACGCATTGGTTTTGCAGGAAAAGCTCTT-CTTGCCATGATTTTCCTTATATTTTGAGTTCG
258 ACGCATTGGTTTTGCAAGAAAAGCT-TTCCTTGCCATGATTTTCCTTATATTTTGAGTTCG
* *
1382949 TATGTTAGATGAAACAAACATGGATTCTTATAACAATCTTCATTCTTTCCTTGATTAGGCAAACA
1 TATGTTAGATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTCCATGATTAGGCAAACA
* *
1383014 AAACACATTCCCCTTTTTGGGATACACAATATTAATGCTTTGATTTCATGAGAAAAGTTTTTTCT
66 AAACACATTCTCCTTTTTGGGATACACGATATTAATGCTTTGATTTCATGAGAAAAGTTTTTTCT
* * * * *
1383079 CTACCATTTTCCTCATAATAAAAGTTTATAATTTAAATGAGACAAAGATGGATCTACGAAAAAAT
131 CAACCATTTTCCTTAGAATAAAAGTTTATACTTTAAATGAGACAAACATGGATCTACGAAAAAAT
* * * * * *
1383144 CTACATTCTTTCAATGATTAGGC-CTTATAAACACGTTATCTTTATTGGGATGCGCAATATTGAG
196 CTACATTCTTTCAATGATTGGGCAC-CATAAACACGTTATCTTCATTGGGATACACAATATTGAC
* * * * *
1383208 GCATTGGTTTTGGAAGAAAAGCTTTCCATGCCACGATTTCCCTCATATTTTGAGTT-G
260 GCATTGGTTTTGCAAGAAAAGCTTTCCTTGCCATGATTTTCCTTATATTTTGAGTTCG
* * *
1383265 ATATGTTAAATGAAACAAGCATGGATTCTTATAATAATCTTTATTCTTTCCATGATTAGGCAAAC
1 -TATGTTAGATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTCCATGATTAGGCAAAC
* * *
1383330 AAAACATATTCTCCTCTTTGGGATACACGATATTAACGCTTTGATTTCATGAGAAAAGTTTTTTC
65 AAAACACATTCTCCTTTTTGGGATACACGATATTAATGCTTTGATTTCATGAGAAAAGTTTTTTC
* *
1383395 TCTACCATTGTCCTTAGAATAAAAGTTTATACTTTAAATGAGACAAACATGGATCTACGAAAAAA
130 TCAACCATTTTCCTTAGAATAAAAGTTTATACTTTAAATGAGACAAACATGGATCTACGAAAAAA
* * * *
1383460 TCTCCATTCTTTCAATGATTGGGCACCATAAACATGTTATCTTCATTGGGATGCACAATATTGAT
195 TCTACATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTGGGATACACAATATTGAC
* *
1383525 GCATTGGTTTTGCAAGAAAAGCTTTCCTTGCCACGATTTTCCTCATATTTTGA----G
260 GCATTGGTTTTGCAAGAAAAGCTTTCCTTGCCATGATTTTCCTTATATTTTGAGTTCG
* * * * *
1383579 T-T-TT-G-T--AACAAGCATGGATTCTTAGAACAATCTTCATTCTTTCCATGATTACGC-ATC-
1 TATGTTAGATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTCCATGATTAGGCAAACA
* * * *
1383636 CAA-A-ATGTGTCCTCATTT-GGATACACGATATTAATGCTTTGATTTCATAAGAAAAGTTCTTT
66 AAACACAT-TCTCCT-TTTTGGGATACACGATATTAATGCTTTGATTTCATGAGAAAAGTT-TTT
*** ** * *
1383698 TCTCAATTGTTTTCCCCAGAATAAAAGTTTATACTTTAAATTAGACAAACATGGATCTACGAAAT
128 TCTCAACCATTTTCCTTAGAATAAAAGTTTATACTTTAAATGAGACAAACATGGATCTACGAAAA
* * * * * * *
1383763 AATC-ACTATTCCTT--ATGAGTGGGCACCATCAACACGTTATATTCATTCGGATACAGAAAATT
193 AATCTAC-ATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTGGGATACACAATATT
* * * *
1383825 GTCGCATTGGTTTTGCAAGGAAAGCTTTTCTTGCCATGATTTTCCTTATATTTTGAGTTCC
257 GACGCATTGGTTTTGCAAGAAAAGCTTTCCTTGCCATGATTTTCCTTATATTTTGAGTTCG
* * *
1383886 TATGTTAGATGAAACAAATATGGATTCTTATAACAATCTTCATTCTTTTCATGATTAGGCAAACA
1 TATGTTAGATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTCCATGATTAGGCAAACA
* * *
1383951 AAACA-ATTCTCCTTTTTTGGATACACGATATTAATGCTTTGATTTTATGAGAAAACTTTTTTCT
66 AAACACATTCTCCTTTTTGGGATACACGATATTAATGCTTTGATTTCATGAGAAAAGTTTTTTCT
*** * *
1384015 TTGCCATTTTCCTTAGAATAAAAGTTTATACTTTAAATGAGACAAATATGGATCTACGAGAAAAT
131 CAACCATTTTCCTTAGAATAAAAGTTTATACTTTAAATGAGACAAACATGGATCTACGAAAAAAT
* * * * * *
1384080 CTCCATTCTTTCAGTGATTGGGCCCCATAAACACGTTATCTTCATTGGGATATACAATATTAACA
196 CTACATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTGGGATACACAATATTGACG
** ** * *
1384145 CATTGGTTTTGCTCGAAAAGCTTTCCTTGCCATGATTTTCCACAAAATTTGAGTTCG
261 CATTGGTTTTGCAAGAAAAGCTTTCCTTGCCATGATTTTCCTTATATTTTGAGTTCG
* * * * * **
1384202 TATGTTAAATGAAACAAGCATGGATTCTTATAATAATCTTCATTCTTTCCTTGCTTAGCCATCCA
1 TATGTTAGATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTCCATGATTAGGCAAACA
** * ** * *
1384267 AAATGCGTTCTCCTTATTT-GGACGCACGATATTACTGCTTTGATTTCATAAGAAAAGTTTTTTT
66 AAACACATTCTCCTT-TTTGGGATACACGATATTAATGCTTTGATTTCATGAGAAAAG-TTTTTT
* * * *
1384331 CTCAATCATTTTCCTCATAATAAAAGTTTATACTTTAAATGAGACAAACATGGATCTACAAAAAA
129 CTCAACCATTTTCCTTAGAATAAAAGTTTATACTTTAAATGAGACAAACATGGATCTACGAAAAA
* * *
1384396 ATC-ACCATTCTTTCAATGATTGGGCACCACAAACTCGTTATCTTCATTGGGATACACAAAATTG
194 ATCTA-CATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTGGGATACACAATATTG
* * *
1384460 GCGCATTGGTTTTGCTAGAAAAGCTCTT-CTTGCCATAATTTTCCTTATATTTTGAGTTCG
258 ACGCATTGGTTTTGCAAGAAAAGCT-TTCCTTGCCATGATTTTCCTTATATTTTGAGTTCG
* *
1384520 AATGTTAGATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTCCACGATTAGGCAAACA
1 TATGTTAGATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTCCATGATTAGGCAAACA
* * *
1384585 AAACACATTCTCCTTTTTGGGATGCATGATATTAATGCTTTGATTTCATGAGAAGAGTTTTTTCT
66 AAACACATTCTCCTTTTTGGGATACACGATATTAATGCTTTGATTTCATGAGAAAAGTTTTTTCT
* * * * *
1384650 CCACGATTTTCCTTGGAGTAAAAGTTTATACTTTAAATGAGACAAACGTGGATCTACGAAAAAAT
131 CAACCATTTTCCTTAGAATAAAAGTTTATACTTTAAATGAGACAAACATGGATCTACGAAAAAAT
* * * * * * *** *
1384715 CTCCATTCTTTCAAAGATTAGGCCCCATAAACACATTATCTTTATTGGGATGTGCAATATTGAGG
196 CTACATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTGGGATACACAATATTGACG
* * * * *
1384780 CATTGGTTTTGCAAGAAAAGCTTTCCATGCCACGATTATCCTCATATTTTGAGTTCA
261 CATTGGTTTTGCAAGAAAAGCTTTCCTTGCCATGATTTTCCTTATATTTTGAGTTCG
* * * *
1384837 TATGTTAAATGAAACAAGCATGGATTCTTATAATAATCTTCATTCTTTCCAGGATTTA-GCAACC
1 TATGTTAGATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTCCATGA-TTAGGCAAAC
*** * * * *
1384901 AAAACGTGTTCTCCTTTTTTGGATACACAATATTAATGTTTTGATTTCATAAGAAAAGTTTTTTT
65 AAAACACATTCTCCTTTTTGGGATACACGATATTAATGCTTTGATTTCATGAGAAAAG-TTTTTT
* * * * * * *
1384966 CTCAATCGTTTTCCTCATAATAGAAGTTTATACTTTAAATTAGACAAACATGGATCTACGAAATA
129 CTCAACCATTTTCCTTAGAATAAAAGTTTATACTTTAAATGAGACAAACATGGATCTACGAAAAA
* * * * *
1385031 ATC-ACCATTCTTTCAATGAGTAGGCACCATCAATACGTTATCTTCATTGGGATACAGAGA-ATT
194 ATCTA-CATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTGGGATACACA-ATATT
* * * *
1385094 GACGCATTGGTTTTGCAAGGAAAGCTTTTCTTGCC-TCGATTTTTCTTATATTTTGAGTTTG
257 GACGCATTGGTTTTGCAAGAAAAGCTTTCCTTGCCAT-GATTTTCCTTATATTTTGAGTTCG
* *
1385155 TATGTTATATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTCTATGATTAGGCAAACA
1 TATGTTAGATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTCCATGATTAGGCAAACA
1385220 AAACACATTCTCCTTTTT
66 AAACACATTCTCCTTTTT
1385238 CTCAATCATT
Statistics
Matches: 2224, Mismatches: 337, Indels: 91
0.84 0.13 0.03
Matches are distributed among these distances:
303 92 0.04
304 45 0.02
305 74 0.03
306 2 0.00
307 45 0.02
308 1 0.00
309 3 0.00
310 1 0.00
311 3 0.00
312 1 0.00
313 44 0.02
314 72 0.03
315 45 0.02
316 155 0.07
317 859 0.39
318 777 0.35
319 5 0.00
ACGTcount: A:0.32, C:0.17, G:0.14, T:0.37
Consensus pattern (317 bp):
TATGTTAGATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTCCATGATTAGGCAAACA
AAACACATTCTCCTTTTTGGGATACACGATATTAATGCTTTGATTTCATGAGAAAAGTTTTTTCT
CAACCATTTTCCTTAGAATAAAAGTTTATACTTTAAATGAGACAAACATGGATCTACGAAAAAAT
CTACATTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTGGGATACACAATATTGACG
CATTGGTTTTGCAAGAAAAGCTTTCCTTGCCATGATTTTCCTTATATTTTGAGTTCG
Found at i:1384857 original size:635 final size:633
Alignment explanation
Indices: 1382313--1385237 Score: 3727
Period size: 635 Copynumber: 4.6 Consensus size: 633
1382303 GTTGTCATCA
* * * * * * *
1382313 ATATGTTAGATGAAACAAACATGGAATCTTATAACAACCTTCATTCTTTTCGTGATTA-CGCAAA
1 ATATGTTAAATGAAACAAGCATGGATTCTTATAACAATCTTCATTCTTTCCATGATTAGC-CAAC
* * * *
1382377 CAAAA-GACATTCTCCTTTTTGGGACACACAATATTAATGCTTTGATTTCATGAGAAAAG-CTTT
65 CAAAACG-CGTTCTCCTTTTT-GGATACACAATATTAATGCTTTGATTTCATAAGAAAAGTTTTT
* * * * * * *
1382440 TTCTCTACCATTTTCCTTAGAATAAAAGTTTATACTTTAAATGTGACGAACATGGGTCTACGAAA
128 TTCTCAATCATTTTCCTCATAATAAAAGTTTATACTTTAAATGAGACAAACATGGATCTACGAAA
** * * * * *
1382505 AAATCTTCATTCTTTCAATGATTGGGCCCCATAAACAT-GTTATCTTCATTTGGATGCACAATAT
193 AAATCACCATTCTTTCAATGATTGGGCACCACAAAC-TCGTTATCTTCATTGGGATACACAAAAT
*
1382569 TGACGCATTGGTTTTGCAAGAAAAGCTTTCCTTGCCATGATATTCCTCT-TATTTTGAGTTCGTA
257 TGACGCATTGGTTTTGCAAGAAAAGCTTT-CTTGCCATGATTTTCCT-TATATTTTGAGTTCGTA
* * * *
1382633 TGTTAAATGAAACAAGCATGGATTCTTATAATAATCTTCATTATTTCCATGCTTAGGCAACCAAA
320 TGTTAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTCCATGATTAGGCAAACAAA
* * * * * *
1382698 ACGCGTTCTCCTTATTT-AGATACACGATATTAATGATTTGATCTCATAAGAAAAGTTTTTTTCT
385 ACACATTCTCCTT-TTTGGGATACACGATATTAATGCTTTGATTTCATGAGAAAAG-TTTTTTCT
* *** *
1382762 CAATTGTTTTCCTTAGAATAAAAGTTTATACTTTAAATGAAACAAACATGGATCTACGAAAAAAT
448 CTACCATTTTCCTTAGAATAAAAGTTTATACTTTAAATGAGACAAACATGGATCTACGAAAAAAT
** * * *
1382827 GACCGTTCTTTCAATGATTAGGCACCATAAACACGTTATCTTCATTGGTATACACAAAATTGACG
513 CTCCATTCTTTCAATGATTAGGCACCATAAACACGTTATCTTCATTGGGATACACAATATTGACG
* * *
1382892 CATTGGTTTTGCAGGAAAAGCTCTT-CTTGCCATGATTTTCCTTATATTTTGAGTTC
578 CATTGGTTTTGCAAGAAAAGCT-TTCCTTGCCACGATTTTCCTCATATTTTGAGTTC
* * * * * *
1382948 GTATGTTAGATGAAACAAACATGGATTCTTATAACAATCTTCATTCTTTCCTTGATTAGGCAAAC
1 ATATGTTAAATGAAACAAGCATGGATTCTTATAACAATCTTCATTCTTTCCATGATTAGCCAACC
* * * *
1383013 AAAACACATTCCCCTTTTTGGGATACACAATATTAATGCTTTGATTTCATGAGAAAAG-TTTTTT
66 AAAACGCGTTCTCCTTTTT-GGATACACAATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTT
* * * *
1383077 CTCTACCATTTTCCTCATAATAAAAGTTTATAATTTAAATGAGACAAAGATGGATCTACGAAAAA
130 CTCAATCATTTTCCTCATAATAAAAGTTTATACTTTAAATGAGACAAACATGGATCTACGAAAAA
* * * * * * * *
1383142 ATCTA-CATTCTTTCAATGATTAGGC-CTTATAAACACGTTATCTTTATTGGGATGCGCAATATT
195 ATC-ACCATTCTTTCAATGATTGGGCAC-CACAAACTCGTTATCTTCATTGGGATACACAAAATT
* * * * * *
1383205 GAGGCATTGGTTTTGGAAGAAAAGCTTTCCATGCCACGATTTCCCTCATATTTTGAGTT-GATAT
258 GACGCATTGGTTTTGCAAGAAAAGCTTT-CTTGCCATGATTTTCCTTATATTTTGAGTTCG-TAT
* *
1383269 GTTAAATGAAACAAGCATGGATTCTTATAATAATCTTTATTCTTTCCATGATTAGGCAAACAAAA
321 GTTAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTCCATGATTAGGCAAACAAAA
* * *
1383334 CATATTCTCCTCTTTGGGATACACGATATTAACGCTTTGATTTCATGAGAAAAGTTTTTTCTCTA
386 CACATTCTCCTTTTTGGGATACACGATATTAATGCTTTGATTTCATGAGAAAAGTTTTTTCTCTA
*
1383399 CCATTGTCCTTAGAATAAAAGTTTATACTTTAAATGAGACAAACATGGATCTACGAAAAAATCTC
451 CCATTTTCCTTAGAATAAAAGTTTATACTTTAAATGAGACAAACATGGATCTACGAAAAAATCTC
* * * *
1383464 CATTCTTTCAATGATTGGGCACCATAAACATGTTATCTTCATTGGGATGCACAATATTGATGCAT
516 CATTCTTTCAATGATTAGGCACCATAAACACGTTATCTTCATTGGGATACACAATATTGACGCAT
1383529 TGGTTTTGCAAGAAAAGCTTTCCTTGCCACGATTTTCCTCATATTTTGAGTT-
581 TGGTTTTGCAAGAAAAGCTTTCCTTGCCACGATTTTCCTCATATTTTGAGTTC
* *
1383581 -T-TG-----T--AACAAGCATGGATTCTTAGAACAATCTTCATTCTTTCCATGATTA-CGCATC
1 ATATGTTAAATGAAACAAGCATGGATTCTTATAACAATCTTCATTCTTTCCATGATTAGC-CAAC
* * * * * *
1383636 CAAAATGTGTCCT-C-ATTTGGATACACGATATTAATGCTTTGATTTCATAAGAAAAGTTCTTTT
65 CAAAACGCGTTCTCCTTTTTGGATACACAATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTT
** * * * *
1383699 CTCAATTGTTTTCCCCAGAATAAAAGTTTATACTTTAAATTAGACAAACATGGATCTACGAAATA
130 CTCAATCATTTTCCTCATAATAAAAGTTTATACTTTAAATGAGACAAACATGGATCTACGAAAAA
* * * * * * *
1383764 ATCACTATTCCTT--ATGAGTGGGCACCATC-AACACGTTATATTCATTCGGATACAGAAAATTG
195 ATCACCATTCTTTCAATGATTGGGCACCA-CAAACTCGTTATCTTCATTGGGATACACAAAATTG
* * *
1383826 TCGCATTGGTTTTGCAAGGAAAGCTTTTCTTGCCATGATTTTCCTTATATTTTGAGTTCCTATGT
259 ACGCATTGGTTTTGCAAGAAAAGC-TTTCTTGCCATGATTTTCCTTATATTTTGAGTTCGTATGT
* * * *
1383891 TAGATGAAACAAATATGGATTCTTATAACAATCTTCATTCTTTTCATGATTAGGCAAACAAAACA
323 TAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTCCATGATTAGGCAAACAAAACA
* * * * *
1383956 -ATTCTCCTTTTTTGGATACACGATATTAATGCTTTGATTTTATGAGAAAACTTTTTTCTTTGCC
388 CATTCTCCTTTTTGGGATACACGATATTAATGCTTTGATTTCATGAGAAAAGTTTTTTCTCTACC
* *
1384020 ATTTTCCTTAGAATAAAAGTTTATACTTTAAATGAGACAAATATGGATCTACGAGAAAATCTCCA
453 ATTTTCCTTAGAATAAAAGTTTATACTTTAAATGAGACAAACATGGATCTACGAAAAAATCTCCA
* * * * * *
1384085 TTCTTTCAGTGATTGGGCCCCATAAACACGTTATCTTCATTGGGATATACAATATTAACACATTG
518 TTCTTTCAATGATTAGGCACCATAAACACGTTATCTTCATTGGGATACACAATATTGACGCATTG
** * * * *
1384150 GTTTTGCTCGAAAAGCTTTCCTTGCCATGATTTTCCACAAAATTTGAGTTC
583 GTTTTGCAAGAAAAGCTTTCCTTGCCACGATTTTCCTCATATTTTGAGTTC
* * * * *
1384201 GTATGTTAAATGAAACAAGCATGGATTCTTATAATAATCTTCATTCTTTCCTTGCTTAGCCATCC
1 ATATGTTAAATGAAACAAGCATGGATTCTTATAACAATCTTCATTCTTTCCATGATTAGCCAACC
* ** * *
1384266 AAAATGCGTTCTCCTTATTTGGACGCACGATATTACTGCTTTGATTTCATAAGAAAAGTTTTTTT
66 AAAACGCGTTCTCCTT-TTTGGATACACAATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTT
*
1384331 CTCAATCATTTTCCTCATAATAAAAGTTTATACTTTAAATGAGACAAACATGGATCTACAAAAAA
130 CTCAATCATTTTCCTCATAATAAAAGTTTATACTTTAAATGAGACAAACATGGATCTACGAAAAA
*
1384396 ATCACCATTCTTTCAATGATTGGGCACCACAAACTCGTTATCTTCATTGGGATACACAAAATTGG
195 ATCACCATTCTTTCAATGATTGGGCACCACAAACTCGTTATCTTCATTGGGATACACAAAATTGA
* * *
1384461 CGCATTGGTTTTGCTAGAAAAGCTCTTCTTGCCATAATTTTCCTTATATTTTGAGTTCGAATGTT
260 CGCATTGGTTTTGCAAGAAAAGCT-TTCTTGCCATGATTTTCCTTATATTTTGAGTTCGTATGTT
* *
1384526 AGATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTCCACGATTAGGCAAACAAAACAC
324 AAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTCCATGATTAGGCAAACAAAACAC
* * * * *
1384591 ATTCTCCTTTTTGGGATGCATGATATTAATGCTTTGATTTCATGAGAAGAGTTTTTTCTCCACGA
389 ATTCTCCTTTTTGGGATACACGATATTAATGCTTTGATTTCATGAGAAAAGTTTTTTCTCTACCA
* * *
1384656 TTTTCCTTGGAGTAAAAGTTTATACTTTAAATGAGACAAACGTGGATCTACGAAAAAATCTCCAT
454 TTTTCCTTAGAATAAAAGTTTATACTTTAAATGAGACAAACATGGATCTACGAAAAAATCTCCAT
* * * * *** *
1384721 TCTTTCAAAGATTAGGCCCCATAAACACATTATCTTTATTGGGATGTGCAATATTGAGGCATTGG
519 TCTTTCAATGATTAGGCACCATAAACACGTTATCTTCATTGGGATACACAATATTGACGCATTGG
* *
1384786 TTTTGCAAGAAAAGCTTTCCATGCCACGATTATCCTCATATTTTGAGTTC
584 TTTTGCAAGAAAAGCTTTCCTTGCCACGATTTTCCTCATATTTTGAGTTC
* *
1384836 ATATGTTAAATGAAACAAGCATGGATTCTTATAATAATCTTCATTCTTTCCAGGATTTAG-CAAC
1 ATATGTTAAATGAAACAAGCATGGATTCTTATAACAATCTTCATTCTTTCCATGA-TTAGCCAAC
* *
1384900 CAAAACGTGTTCTCCTTTTTTGGATACACAATATTAATGTTTTGATTTCATAAGAAAAGTTTTTT
65 CAAAACGCGTTCTCC-TTTTTGGATACACAATATTAATGCTTTGATTTCATAAGAAAAGTTTTTT
* * * *
1384965 TCTCAATCGTTTTCCTCATAATAGAAGTTTATACTTTAAATTAGACAAACATGGATCTACGAAAT
129 TCTCAATCATTTTCCTCATAATAAAAGTTTATACTTTAAATGAGACAAACATGGATCTACGAAAA
* * * *
1385030 AATCACCATTCTTTCAATGAGTAGGCACCATC-AA-TACGTTATCTTCATTGGGATACAGAGAAT
194 AATCACCATTCTTTCAATGATTGGGCACCA-CAAACT-CGTTATCTTCATTGGGATACACAAAAT
* * *
1385093 TGACGCATTGGTTTTGCAAGGAAAGCTTTTCTTGCC-TCGATTTTTCTTATATTTTGAGTTTGTA
257 TGACGCATTGGTTTTGCAAGAAAAGC-TTTCTTGCCAT-GATTTTCCTTATATTTTGAGTTCGTA
* *
1385157 TGTTATATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTCTATGATTAGGCAAACAAA
320 TGTTAAATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTCCATGATTAGGCAAACAAA
1385222 ACACATTCTCCTTTTT
385 ACACATTCTCCTTTTT
1385238 CTCAATCATT
Statistics
Matches: 2010, Mismatches: 239, Indels: 82
0.86 0.10 0.04
Matches are distributed among these distances:
619 220 0.11
620 145 0.07
621 42 0.02
622 74 0.04
623 1 0.00
624 51 0.03
626 1 0.00
627 1 0.00
629 56 0.03
630 2 0.00
631 2 0.00
632 114 0.06
633 4 0.00
634 339 0.17
635 950 0.47
636 8 0.00
ACGTcount: A:0.32, C:0.17, G:0.14, T:0.37
Consensus pattern (633 bp):
ATATGTTAAATGAAACAAGCATGGATTCTTATAACAATCTTCATTCTTTCCATGATTAGCCAACC
AAAACGCGTTCTCCTTTTTGGATACACAATATTAATGCTTTGATTTCATAAGAAAAGTTTTTTTC
TCAATCATTTTCCTCATAATAAAAGTTTATACTTTAAATGAGACAAACATGGATCTACGAAAAAA
TCACCATTCTTTCAATGATTGGGCACCACAAACTCGTTATCTTCATTGGGATACACAAAATTGAC
GCATTGGTTTTGCAAGAAAAGCTTTCTTGCCATGATTTTCCTTATATTTTGAGTTCGTATGTTAA
ATGAAACAAACATGGATTCTTATAATAATCTTCATTCTTTCCATGATTAGGCAAACAAAACACAT
TCTCCTTTTTGGGATACACGATATTAATGCTTTGATTTCATGAGAAAAGTTTTTTCTCTACCATT
TTCCTTAGAATAAAAGTTTATACTTTAAATGAGACAAACATGGATCTACGAAAAAATCTCCATTC
TTTCAATGATTAGGCACCATAAACACGTTATCTTCATTGGGATACACAATATTGACGCATTGGTT
TTGCAAGAAAAGCTTTCCTTGCCACGATTTTCCTCATATTTTGAGTTC
Found at i:1385447 original size:272 final size:272
Alignment explanation
Indices: 1384961--1385509 Score: 825
Period size: 272 Copynumber: 2.0 Consensus size: 272
1384951 AAGAAAAGTT
* * * **
1384961 TTTTTCTCAATCGTTTTCCTCATAATAGAAGTTTATACTTTAAATTAGACAAACATGGATCTACG
1 TTTTTCTCAATCATTTTCCTCAGAATAAAAGTTTATACTTTAAAAGAGACAAACATGGATCTACG
* * * * * *
1385026 AAATAATCACCATTCTTTCAATGAGTAGGCACCATCAATACGTTATCTTCATTGGGATACAGAGA
66 AAAAAATCACCATTCTTTCAATGAGTAGGCACCATAAACACGTTATCCTCATTGGAATACACAGA
* * * * *
1385091 ATTGACGCATTGGTTTTGCAAGGAAAGCTTTTCTTGCCTCGATTTTTCTTATATTTTGAGTTTGT
131 ATTGACGCAATGGTTTTGCAAGAAAAGCTCTTCTTGCCTCGATTTTCCTTATATTTTGAGTTCGT
* * *
1385156 ATGTTATATGAAACAAACATGGATTCTTATAATAATCTTCATTC-TTTCTATGATTAGGCAAACA
196 ATGTTAGATGAAACAAACATGGATTCTTATAACAACCTTCATTCTTTTC-ATGATTAGGCAAACA
1385220 AAACACATTCTCC
260 AAACACATTCTCC
1385233 TTTTTCTCAATCATTTTCCTCAGAATAAAAGTTTATACTTTAAAAGAGACAAACATGGATCTACG
1 TTTTTCTCAATCATTTTCCTCAGAATAAAAGTTTATACTTTAAAAGAGACAAACATGGATCTACG
* * *
1385298 AAAAAATCACCATTCTTTCAATGATTGGGCACCATAAACATGTTATCCTCATTGGAATACACA-A
66 AAAAAATCACCATTCTTTCAATGAGTAGGCACCATAAACACGTTATCCTCATTGGAATACACAGA
1385362 ATTTGACGCAATGGTTTTGCAAGAAAAGCTCTTCTTGCCAT-GATTTTCCTTATATTTTGAGTTC
131 A-TTGACGCAATGGTTTTGCAAGAAAAGCTCTTCTTGCC-TCGATTTTCCTTATATTTTGAGTTC
* * *
1385426 GTATGTTAGATGAAGCAAACATGGATTCTTATAACAACCTTCATTGTTTTCGTGATTAGGCAAAC
194 GTATGTTAGATGAAACAAACATGGATTCTTATAACAACCTTCATTCTTTTCATGATTAGGCAAAC
1385491 AAAACACATTCTCC
259 AAAACACATTCTCC
1385505 TTTTT
1 TTTTT
1385510 GGGATACACG
Statistics
Matches: 249, Mismatches: 25, Indels: 6
0.89 0.09 0.02
Matches are distributed among these distances:
271 2 0.01
272 242 0.97
273 5 0.02
ACGTcount: A:0.32, C:0.18, G:0.13, T:0.37
Consensus pattern (272 bp):
TTTTTCTCAATCATTTTCCTCAGAATAAAAGTTTATACTTTAAAAGAGACAAACATGGATCTACG
AAAAAATCACCATTCTTTCAATGAGTAGGCACCATAAACACGTTATCCTCATTGGAATACACAGA
ATTGACGCAATGGTTTTGCAAGAAAAGCTCTTCTTGCCTCGATTTTCCTTATATTTTGAGTTCGT
ATGTTAGATGAAACAAACATGGATTCTTATAACAACCTTCATTCTTTTCATGATTAGGCAAACAA
AACACATTCTCC
Found at i:1387675 original size:13 final size:13
Alignment explanation
Indices: 1387657--1387682 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1387647 ACATTTTGGG
1387657 ATGTATCGATACA
1 ATGTATCGATACA
1387670 ATGTATCGATACA
1 ATGTATCGATACA
1387683 TATTGTGTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1387677 original size:33 final size:32
Alignment explanation
Indices: 1387635--1387702 Score: 109
Period size: 33 Copynumber: 2.1 Consensus size: 32
1387625 CGTTACAAGC
*
1387635 CAATGTATCGATACATTTTGGGATGTATCGATA
1 CAATGTATCGATACATATTGGG-TGTATCGATA
*
1387668 CAATGTATCGATACATATTGTGTGTATCGATA
1 CAATGTATCGATACATATTGGGTGTATCGATA
1387700 CAA
1 CAA
1387703 ATTTGGCTAC
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
32 13 0.39
33 20 0.61
ACGTcount: A:0.32, C:0.13, G:0.19, T:0.35
Consensus pattern (32 bp):
CAATGTATCGATACATATTGGGTGTATCGATA
Found at i:1387784 original size:20 final size:21
Alignment explanation
Indices: 1387734--1387788 Score: 67
Period size: 20 Copynumber: 2.7 Consensus size: 21
1387724 GCCAATGACC
**
1387734 TGTATCGATACATTCTTTTCA
1 TGTATCGATACATTCTGGTCA
* *
1387755 AGTATTGATACATT-TGGTCA
1 TGTATCGATACATTCTGGTCA
1387775 TGTATCGATACATT
1 TGTATCGATACATT
1387789 GTATCGATAC
Statistics
Matches: 28, Mismatches: 6, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
20 16 0.57
21 12 0.43
ACGTcount: A:0.27, C:0.15, G:0.15, T:0.44
Consensus pattern (21 bp):
TGTATCGATACATTCTGGTCA
Found at i:1388463 original size:159 final size:158
Alignment explanation
Indices: 1388281--1392151 Score: 1774
Period size: 159 Copynumber: 24.4 Consensus size: 158
1388271 GGATCTACGA
** * *
1388281 AAAAATCTCCATTCTTTAAATGATTAGGCACCATAAACATGTTACCTTCATTGGGATACACAAAA
1 AAAAATCTCCATTCTTTCCATGATTAGGCACCATAAACACGTTACCTTCATTGGGATACACAATA
* **
1388346 GTGACGTATTGGTTTTGCAAGAAAAGCTTTTCTTGCCATGATTTTCCTTATATTTTAAGTTCGTA
66 TTGACGTATTGGTTTTGCAAGAAAAGCTTTTCTTGCCATGATTTTCCTTATATTTTAAGTTTATA
*
1388411 TGTTAGATGAAACAAACATGGATTCTTAT
131 TGTTAAATGAAACAAACATGGA-TCTTAT
* * * * * * **
1388440 AAAAATCTTCATTCCTTCCATGATTAGGCAAACA-AAACACATTCTCCTT--TTCGAGATACATG
1 AAAAATCTCCATTCTTTCCATGATTAGGC-ACCATAAACACGTT-ACCTTCATT-GGGATACACA
* * * * * * * ** * **
1388502 ACATTAATGCT-TT-GATTT-CATGAGAAGAG-TTTT-TTCTCCACGATTTTCCTTGGAGTAAAA
63 ATATTGACG-TATTGGTTTTGCA--AGAAAAGCTTTTCTT-GCCATGATTTTCCTTATATTTTAA
* * *
1388562 GTTTATACT-TTAAATGAGACAAACGTGGATC-TACGA
124 GTTTATA-TGTTAAATGAAACAAACATGGATCTTA--T
* * * * * *
1388598 AAAAATCTCCATTCTTTCAAAGATTGGGCACCATAAACACGTTATCTTCAATGGGATGCACAATA
1 AAAAATCTCCATTCTTTCCATGATTAGGCACCATAAACACGTTACCTTCATTGGGATACACAATA
* * * * ** *
1388663 TTGACGCATTGGTTTTGAAAGAAAAGCTTTCCTTGCCATTATTTTCCACATATTTTAAGTTTGTA
66 TTGACGTATTGGTTTTGCAAGAAAAGCTTTTCTTGCCATGATTTTCCTTATATTTTAAGTTTATA
* *
1388728 TGTTAAATGAAACAAGCAGGGATTCTTAT
131 TGTTAAATGAAACAAACATGGA-TCTTAT
* * * * * * *
1388757 AATAATCTTCATTCTTTCCATGCTGAGGCAACC-CAAACATGTTCACCTT-ATTTGGATACA-AG
1 AAAAATCTCCATTCTTTCCATGATTAGGC-ACCATAAACACGTT-ACCTTCATTGGGATACACA-
* * * * * * * * * * *
1388819 ATATTAATGCT-TT-GATTT-CATGAGAAA-TTTTTTTTTCTCAATCG-TTTTCCTCAGAATTAA
63 ATATTGACG-TATTGGTTTTGCAAGA-AAAGCTTTTCTTGC-C-AT-GATTTTCCTTATATTTTA
*
1388879 AGTTTATACT-TTAAATGAAACAAACATGGATC-TACGA
123 AGTTTATA-TGTTAAATGAAACAAACATGGATCTTA--T
* * * * * *
1388916 AAAAATCACCATTCTTTCGACGATTGGGCGCCATAAACACGTTATCTTCATTGGGATACACAATA
1 AAAAATCTCCATTCTTTCCATGATTAGGCACCATAAACACGTTACCTTCATTGGGATACACAATA
* * * * * * * *
1388981 TTAACGCATTGGTTTTGCAAGAAAAACTCTTCTCGCCATGATTTTCCTCATATTTTGAGTTTGTA
66 TTGACGTATTGGTTTTGCAAGAAAAGCTTTTCTTGCCATGATTTTCCTTATATTTTAAGTTTATA
* *
1389046 TGTTAAACGAAACAAGCATGGATTCTTAT
131 TGTTAAATGAAACAAACATGGA-TCTTAT
* * ** * * ** *
1389075 AATAATCTTCATTCTTTCCATGATTAGGCAACCA-AAATGCATTCTCCTTC-TTTCGATACACGA
1 AAAAATCTCCATTCTTTCCATGATTAGGC-ACCATAAACACGTT-ACCTTCATTGGGATACACAA
* * * *** * * * * * **
1389138 TATTAACGTTTTGATTTCATAAAAAAAG-TTTT-TTTCTCAATCG-TTTTCCTCAGAATAAAAGT
64 TATTGACGTATTGGTTTTGCAAGAAAAGCTTTTCTTGC-C-AT-GATTTTCCTTATATTTTAAGT
* *
1389200 TTATACT-TTAAAAGAAACAAACATGGATC-TACGA
126 TTATA-TGTTAAATGAAACAAACATGGATCTTA--T
* * * * * * *
1389234 AAAAATCACCGTTCTTTCAATGATTGGGCACCATAAACACGTTATCTTCATTAGGATGCACAATA
1 AAAAATCTCCATTCTTTCCATGATTAGGCACCATAAACACGTTACCTTCATTGGGATACACAATA
* * * **
1389299 TTGACGCATTGGTTTTGCAAGAAAAGCTTTTCTTGCCATGGTTTTCCTTATATTTTGAGTTCGTA
66 TTGACGTATTGGTTTTGCAAGAAAAGCTTTTCTTGCCATGATTTTCCTTATATTTTAAGTTTATA
* *
1389364 TGTTAGATGAAACAAACAAGGATTCTTAT
131 TGTTAAATGAAACAAACATGGA-TCTTAT
* * * * * *
1389393 AATAATCTTCATTCTTTCCATGATTAGGCAAACA-AAACACATTCTCCTT-TTTGGGATACACAA
1 AAAAATCTCCATTCTTTCCATGATTAGGC-ACCATAAACACGTT-ACCTTCATTGGGATACACAA
* * * * ** * * * **
1389456 TATTAATGCT-TTGATTTCGTGAGAAAAG-TTTT-TT-CTCAACGATTTTCCTTAGAATAAAAGT
64 TATTGACG-TATTGGTTTTGCAAGAAAAGCTTTTCTTGC-C-ATGATTTTCCTTATATTTTAAGT
** * * * *
1389517 TTATACATTAAGTGAGACAAACGTGGATC-TACC
126 TTATATGTTAAATGAAACAAACATGGATCTTA-T
* * * * * * * *
1389550 AAGAAATCTCCA--CTTTCAAAGATTGGGCACCAGAAACACGTTATCTTCATTGAGATGCGCAAT
1 AA-AAATCTCCATTCTTTCCATGATTAGGCACCATAAACACGTTACCTTCATTGGGATACACAAT
* * * * * * *
1389613 ATTGGCGCATTGGTTATGCAAGAAAAGCTTTTCTTGCCATGACTTTT-GTTATAATTTGAGTTTG
65 ATTGACGTATTGGTTTTGCAAGAAAAGCTTTTCTTGCCATGA-TTTTCCTTATATTTTAAGTTTA
* **
1389677 TATGTTAAATGAAA-AAACTTGGATTCTTGC
129 TATGTTAAATGAAACAAACATGGA-TCTTAT
* * * * * * **
1389707 AAAAATCTTCATACTTTTCATGATTAGGCAACCA-AAACACATTCTCCTT-TTTGGGATACATGA
1 AAAAATCTCCATTCTTTCCATGATTAGGC-ACCATAAACACGTT-ACCTTCATTGGGATACACAA
* * * *** * ** * * **
1389770 TATTAATGCT-TTGATTTCAAAAGTAAAG-TTTT-TT-CTCTACCATTTTCCTTAGAATAAAAGT
64 TATTGACG-TATTGGTTTTGCAAGAAAAGCTTTTCTTGC-C-ATGATTTTCCTTATATTTTAAGT
* ** *
1389831 TTATACT-TTAAATCAGTCAATCATGGATC-TAT
126 TTATA-TGTTAAATGAAACAAACATGGATCTTAT
* * * * * *
1389863 GAAAAAATCTCCATTATTTCCATGATTGGGCACCATAAACACGTTATCTTCAATGGGATGCATAA
1 --AAAAATCTCCATTCTTTCCATGATTAGGCACCATAAACACGTTACCTTCATTGGGATACACAA
* * * * * * * *
1389928 TATTGACGCATTGGTTTTGAAAGAAAAGCTTTCCTTGCCATTATTTTCCTCAAATTTTGAGTTTG
64 TATTGACGTATTGGTTTTGCAAGAAAAGCTTTTCTTGCCATGATTTTCCTTATATTTTAAGTTTA
* * * *
1389993 TATGTTAAATGAGACAAGCATGGATCTACAA
129 TATGTTAAATGAAACAAACATGGATCT-TAT
* * * * ** * *
1390024 AAAAATCACCATTCTTTCAATGATTGGGCACCATAAATACGTTACCTTTTTTGGGATATACAAAA
1 AAAAATCTCCATTCTTTCCATGATTAGGCACCATAAACACGTTACCTTCATTGGGATACACAATA
* * * * **
1390089 ATGACGCATTGGTTTTGCAAGAAAAGCTTTTCTTGCCACGATTTTCCTTATATTTTGAGTTCGTA
66 TTGACGTATTGGTTTTGCAAGAAAAGCTTTTCTTGCCATGATTTTCCTTATATTTTAAGTTTATA
*
1390154 TGTTAGATGAAACAAACATGGATTCTTAT
131 TGTTAAATGAAACAAACATGGA-TCTTAT
** * * * * * * *
1390183 AGTAATCTTCATTCTTTCCATGATTAGACAAACA-AAACACATTCTCCTT-TTTGGGATACATGA
1 AAAAATCTCCATTCTTTCCATGATTAGGC-ACCATAAACACGTT-ACCTTCATTGGGATACA-CA
* * * * * **
1390246 GAGTAATG-C-T-TT-GATTT-CATGAGAAAAG-TTTGTCTCTACC---ATTTTCCTTAGAATAA
63 -A-TATTGACGTATTGGTTTTGCA--AGAAAAGCTTT-TCT-TGCCATGATTTTCCTTATATTTT
*** * *
1390302 AAGTTTATGCATTAAATGAGACAAACATGGATC-TAC
122 AAGTTTATATGTTAAATGAAACAAACATGGATCTTAT
* ** * * * *
1390338 AAAAATTCTCCACTCTTTTAATGATTGGGCACCATGAACACGTTATCTTCATTGGGATGCACAAT
1 AAAAA-TCTCCATTCTTTCCATGATTAGGCACCATAAACACGTTACCTTCATTGGGATACACAAT
* * *
1390403 ATTGATGCT-TTGGTTTTGCAAGAAAAGCTTTCCTTGCCATGATTTTTCCTTATATTTTGAGTTT
65 ATTGACG-TATTGGTTTTGCAAGAAAAGCTTTTCTTGCCATGA-TTTTCCTTATATTTTAAGTTT
* *
1390467 ATTTGTTAAATGAAACAAGCATGGATTCTTAT
128 ATATGTTAAATGAAACAAACATGGA-TCTTAT
* * * *
1390499 AATAATC-CTCATTCTTTCCATGATTACGCAACCA-AAACGCG-TACTCCTT-ATTTGGATACAC
1 AAAAATCTC-CATTCTTTCCATGATTAGGC-ACCATAAACACGTTA--CCTTCATTGGGATACAC
* * * * * * * * *
1390560 GATA-TGA-ATGCTTGGATTT-CATAGGAAAAG-TTTT-TTTCTCAATCG-TTTTCCTCAGAATA
62 AATATTGACGT-ATTGGTTTTGCA-A-GAAAAGCTTTTCTTGC-C-AT-GATTTTCCTTATATTT
* * *
1390619 AAAGTTTATACT-TTAAATGAGACAAGCATGGATC-TAT
121 TAAGTTTATA-TGTTAAATGAAACAAACATGGATCTTAT
* * * * * * *
1390656 GAAAAAATCACCATTCTTTCAATGATTGGGCGCCATAAGCACGTTATCTTCTTTGGGATACACAA
1 --AAAAATCTCCATTCTTTCCATGATTAGGCACCATAAACACGTTACCTTCATTGGGATACACAA
* * * * * * * * * **
1390721 AATTGACGCACTAGTTTTGCAATAAAAGCTTTTCTTGCCATGATTGTCCTTGTATTTTGACTTCG
64 TATTGACGTATTGGTTTTGCAAGAAAAGCTTTTCTTGCCATGATTTTCCTTATATTTTAAGTTTA
*
1390786 TATGTTAGATGAAACAAACATGGATTCTTAT
129 TATGTTAAATGAAACAAACATGGA-TCTTAT
* * * * * **
1390817 AATAATCTTCATTCTTTCCATGATTAGGCAAACA-AAACACATT-CTCATT-TTTGGGATACATG
1 AAAAATCTCCATTCTTTCCATGATTAGGC-ACCATAAACACGTTAC-C-TTCATTGGGATACACA
* * * * * * * * **
1390879 ATATTAATG-CTT-GATTT-CATGAGAAAAGATTTTTCTCT-ACA--ATTTTCCTTAGAATAAAA
63 ATATTGACGTATTGGTTTTGCA--AGAAAAG-CTTTTCT-TGCCATGATTTTCCTTATATTTTAA
* * *
1390938 GTTTATACT-TTGAATGAGACAAACATGGATC-TACGA
124 GTTTATA-TGTTAAATGAAACAAACATGGATCTTA--T
* * *
1390974 AAAAATCTCCATTCTTT-CAGTGATT-GGC-CCTAGAAACACGTTATCTTCATTGGGATGCACAA
1 AAAAATCTCCATTCTTTCCA-TGATTAGGCACC-ATAAACACGTTACCTTCATTGGGATACACAA
* * * * * *
1391036 AATTGACGCATTGGTTTTGCAAGAAAAGCTCTTCTTGCCATGATTTTCCATATATTATGAGTTCT
64 TATTGACGTATTGGTTTTGCAAGAAAAGCTTTTCTTGCCATGATTTTCCTTATATTTTAAGTT-T
* ** *
1391101 -TATATTGGATGAAACAAACGTGGATTCTTAT
128 ATATGTTAAATGAAACAAACATGGA-TCTTAT
** * * * * * *
1391132 ATTAATCTTCATTCTTTCCATGATTAGGCAACCA-AAACGCGTTCTCCTT-ATTCGGTTACACGA
1 AAAAATCTCCATTCTTTCCATGATTAGGC-ACCATAAACACGTT-ACCTTCATTGGGATACACAA
* * * * * * * **
1391195 TATTAAAGCT-TT--TATTT-CATGAGAAAAGATTTT-TCT-CAATCG-TTTT-CTGCAGAATAA
64 TATTGACG-TATTGGT-TTTGCA--AGAAAAGCTTTTCT-TGCCAT-GATTTTCCT-TATATTTT
* * * *
1391252 AAGTTTATACT-TTAAATGAGACAAGCATGGATCTACAA
122 AAGTTTATA-TGTTAAATGAAACAAACATGGATCT-TAT
* * * *
1391290 AAAAATCACCATTCTTTCAATGATTGGGCACCATAAACACGTTATCC-TCATTGGGATACACAAA
1 AAAAATCTCCATTCTTTCCATGATTAGGCACCATAAACACGTTA-CCTTCATTGGGATACACAAT
* * * * * *
1391354 ATTGACGCATTGGTTTTGCAAAAAAAAGCTATTCTT-CCTATGATTTTCCTTAAATTTTGAGTTC
65 ATTGACGTATTGGTTTTGC-AAGAAAAGCTTTTCTTGCC-ATGATTTTCCTTATATTTTAAGTTT
* *
1391418 GTATGTTAGATGAAACAAACATGGATTCTTAT
128 ATATGTTAAATGAAACAAACATGGA-TCTTAT
* * * * * ** *
1391450 GACAATCTTCATTCTTTCCATGATTAGGCAAACA-AAACACATT-CTCTTTTTTGGGATACACGA
1 AAAAATCTCCATTCTTTCCATGATTAGGC-ACCATAAACACGTTAC-CTTCATTGGGATACACAA
* * * ** * * **
1391513 TATTAATGCT-TT-GATTT-CATGAGAAAAG-TTTT-TT-CTCTACCATTTTCCTTAAAATAAAA
64 TATTGACG-TATTGGTTTTGCA--AGAAAAGCTTTTCTTGC-C-ATGATTTTCCTTATATTTTAA
* * * * *
1391572 GTTTATATTTTAAATGAGACAAACATAGATCTACGAA
124 GTTTATATGTTAAATGAAACAAACATGGATCT--TAT
* * * * * * * *
1391609 AAAAATCTACATACTTTCAATGATTGGGCACCATAAACCCGTTATCTTCATTGGGATACAGAAAA
1 AAAAATCTCCATTCTTTCCATGATTAGGCACCATAAACACGTTACCTTCATTGGGATACACAATA
* * *
1391674 TTGACGCATTGGTTTTGCAAGAAAAGCTTTTCTTGCCATGATTTTCCTTATATTTTGAGTTCATA
66 TTGACGTATTGGTTTTGCAAGAAAAGCTTTTCTTGCCATGATTTTCCTTATATTTTAAGTTTATA
* *
1391739 TGTTAGATGAAACAAACATGAATTCTTAT
131 TGTTAAATGAAACAAACATGGA-TCTTAT
** * * * * * * * * *
1391768 AAAAATCTTTATTCTTTTCGTGATTAAGCAAACA-AAAGACATTCTCCTT-TTTGGGATACACGA
1 AAAAATCTCCATTCTTTCCATGATTAGGC-ACCATAAACACGTT-ACCTTCATTGGGATACACAA
* * * ** * * **
1391831 TATT-A-ATAGTTTGATTT-CATGAGAAAAG-TTTT-TT-CTCTACCATTTTCCTTAGAATAAAA
64 TATTGACGTA-TTGGTTTTGCA--AGAAAAGCTTTTCTTGC-C-ATGATTTTCCTTATATTTTAA
* * * *
1391890 GTTTATACT-TTAAATGAGACAATCATGGAT-GTACGA
124 GTTTATA-TGTTAAATGAAACAAACATGGATCTTA--T
* * * * * * *
1391926 AAAAATCTCCATTCATTT--AGTGATTGGGCCCCATGAACAAGTTATCTTCATTGGTATGCACAA
1 AAAAATCTCCATTC-TTTCCA-TGATTAGGCACCATAAACACGTTACCTTCATTGGGATACACAA
* * * * * *
1391989 TATTGACGCATTGGATTTGCAAGAAAAGCTTTCCTTGCCATGATTTTCCTCATATTTTGAGTTTG
64 TATTGACGTATTGGTTTTGCAAGAAAAGCTTTTCTTGCCATGATTTTCCTTATATTTTAAGTTTA
* ** *
1392054 TATGTTAAATAAAACAAGTACGGATTCTTAT
129 TATGTTAAATGAAACAAACATGGA-TCTTAT
* ** * * * * *
1392085 AAAATTCTTTATTCTTTCCATGCTTAGGCAACCA-AAACGCGTTCTCCTT-ATTTGGATACACGA
1 AAAAATCTCCATTCTTTCCATGATTAGGC-ACCATAAACACGTT-ACCTTCATTGGGATACACAA
1392148 TATT
64 TATT
1392152 AATTCTTTGA
Statistics
Matches: 2697, Mismatches: 768, Indels: 494
0.68 0.19 0.12
Matches are distributed among these distances:
153 4 0.00
154 2 0.00
155 28 0.01
156 169 0.06
157 248 0.09
158 629 0.23
159 1247 0.46
160 299 0.11
161 66 0.02
162 5 0.00
ACGTcount: A:0.32, C:0.17, G:0.15, T:0.36
Consensus pattern (158 bp):
AAAAATCTCCATTCTTTCCATGATTAGGCACCATAAACACGTTACCTTCATTGGGATACACAATA
TTGACGTATTGGTTTTGCAAGAAAAGCTTTTCTTGCCATGATTTTCCTTATATTTTAAGTTTATA
TGTTAAATGAAACAAACATGGATCTTAT
Found at i:1388687 original size:317 final size:317
Alignment explanation
Indices: 1388109--1390017 Score: 2567
Period size: 318 Copynumber: 6.0 Consensus size: 317
1388099 AGATCCTAAC
*
1388109 ACATGGATTCTTATAATAATCTTCATTCTTTCCATGATTAGGCAAACAAAACACATTCTCCATTT
1 ACATGGATTCTTATAATAATCTTCATTCTTTCCATGATTAGGCAAACAAAACACATTCTCCTTTT
* * * *
1388174 TGGGATACACGATATTAATGCTTTGATTTCATGAGAAAAGATTTTTCTCTACAATTTTCCTGAGA
66 TGGGATACACGATATTAATGCTTTGATTTCATGAGAAAAGTTTTTTCTCAACGATTTTCCTTAGA
* *
1388239 ATAAAAGTTTATACTTTGAATGAGACAAAAATGGATCTACGAAAAAATCTCCATTCTTT-AAATG
131 ATAAAAGTTTATACTTTAAATGAGACAAACATGGATCTACGAAAAAATCTCCATTCTTTCAAA-G
* * * * * * *
1388303 ATTAGGCACCATAAACATGTTACCTTCATTGGGATACACAAAAGTGACGTATTGGTTTTGCAAGA
195 ATTGGGCACCATAAACACGTTATCTTCATTGGGATGCACAATATTGACGCATTGGTTTTGCAAGA
* * * *
1388368 AAAGCTTTTCTTGCCATGATTTTCCTTATATTTTAAGTTCGTATGTTAGATGAAACAA
260 AAAGCTTTTCTTGCCATGATTTTCCTCATATTTTGAGTTTGTATGTTAAATGAAACAA
* *
1388426 ACATGGATTCTTATAAAAATCTTCATTCCTTCCATGATTAGGCAAACAAAACACATTCTCCTTTT
1 ACATGGATTCTTATAATAATCTTCATTCTTTCCATGATTAGGCAAACAAAACACATTCTCCTTTT
* * * * * * *
1388491 CGAGATACATGACATTAATGCTTTGATTTCATGAGAAGAGTTTTTTCTCCACGATTTTCCTTGGA
66 TGGGATACACGATATTAATGCTTTGATTTCATGAGAAAAGTTTTTTCTCAACGATTTTCCTTAGA
* *
1388556 GTAAAAGTTTATACTTTAAATGAGACAAACGTGGATCTACGAAAAAATCTCCATTCTTTCAAAGA
131 ATAAAAGTTTATACTTTAAATGAGACAAACATGGATCTACGAAAAAATCTCCATTCTTTCAAAGA
* *
1388621 TTGGGCACCATAAACACGTTATCTTCAATGGGATGCACAATATTGACGCATTGGTTTTGAAAGAA
196 TTGGGCACCATAAACACGTTATCTTCATTGGGATGCACAATATTGACGCATTGGTTTTGCAAGAA
* * * *
1388686 AAGCTTTCCTTGCCATTATTTTCCACATATTTTAAGTTTGTATGTTAAATGAAACAA
261 AAGCTTTTCTTGCCATGATTTTCCTCATATTTTGAGTTTGTATGTTAAATGAAACAA
* * * * * * ** *
1388743 GCAGGGATTCTTATAATAATCTTCATTCTTTCCATGCTGAGGCAACCCAAACATGTTCACCTTAT
1 ACATGGATTCTTATAATAATCTTCATTCTTTCCATGATTAGGCAAACAAAACACATTCTCCTT-T
* ** *
1388808 TT-GGATACAAGATATTAATGCTTTGATTTCATGAGAAATTTTTTTTTCTCAATCG-TTTTCCTC
65 TTGGGATACACGATATTAATGCTTTGATTTCATGAGAAA-AGTTTTTTCTCAA-CGATTTTCCTT
* * * *
1388871 AGAATTAAAGTTTATACTTTAAATGAAACAAACATGGATCTACGAAAAAATCACCATTCTTTCGA
128 AGAATAAAAGTTTATACTTTAAATGAGACAAACATGGATCTACGAAAAAATCTCCATTCTTTCAA
* * * *
1388936 CGATTGGGCGCCATAAACACGTTATCTTCATTGGGATACACAATATTAACGCATTGGTTTTGCAA
193 AGATTGGGCACCATAAACACGTTATCTTCATTGGGATGCACAATATTGACGCATTGGTTTTGCAA
* * * *
1389001 GAAAAACTCTTCTCGCCATGATTTTCCTCATATTTTGAGTTTGTATGTTAAACGAAACAA
258 GAAAAGCTTTTCTTGCCATGATTTTCCTCATATTTTGAGTTTGTATGTTAAATGAAACAA
* * **
1389061 GCATGGATTCTTATAATAATCTTCATTCTTTCCATGATTAGGCAACCAAAATGCATTCTCCTTCT
1 ACATGGATTCTTATAATAATCTTCATTCTTTCCATGATTAGGCAAACAAAACACATTCTCCTT-T
* * * * * *
1389126 TT-CGATACACGATATTAACGTTTTGATTTCATAAAAAAAGTTTTTTTCTCAATCG-TTTTCCTC
65 TTGGGATACACGATATTAATGCTTTGATTTCATGAGAAAAG-TTTTTTCTCAA-CGATTTTCCTT
* * * *
1389189 AGAATAAAAGTTTATACTTTAAAAGAAACAAACATGGATCTACGAAAAAATCACCGTTCTTTCAA
128 AGAATAAAAGTTTATACTTTAAATGAGACAAACATGGATCTACGAAAAAATCTCCATTCTTTCAA
* *
1389254 TGATTGGGCACCATAAACACGTTATCTTCATTAGGATGCACAATATTGACGCATTGGTTTTGCAA
193 AGATTGGGCACCATAAACACGTTATCTTCATTGGGATGCACAATATTGACGCATTGGTTTTGCAA
* * * *
1389319 GAAAAGCTTTTCTTGCCATGGTTTTCCTTATATTTTGAGTTCGTATGTTAGATGAAACAA
258 GAAAAGCTTTTCTTGCCATGATTTTCCTCATATTTTGAGTTTGTATGTTAAATGAAACAA
*
1389379 ACAAGGATTCTTATAATAATCTTCATTCTTTCCATGATTAGGCAAACAAAACACATTCTCCTTTT
1 ACATGGATTCTTATAATAATCTTCATTCTTTCCATGATTAGGCAAACAAAACACATTCTCCTTTT
* *
1389444 TGGGATACACAATATTAATGCTTTGATTTCGTGAGAAAAGTTTTTTCTCAACGATTTTCCTTAGA
66 TGGGATACACGATATTAATGCTTTGATTTCATGAGAAAAGTTTTTTCTCAACGATTTTCCTTAGA
* * * * *
1389509 ATAAAAGTTTATACATTAAGTGAGACAAACGTGGATCTACCAAGAAATCTCCA--CTTTCAAAGA
131 ATAAAAGTTTATACTTTAAATGAGACAAACATGGATCTACGAAAAAATCTCCATTCTTTCAAAGA
* * * * *
1389572 TTGGGCACCAGAAACACGTTATCTTCATTGAGATGCGCAATATTGGCGCATTGGTTATGCAAGAA
196 TTGGGCACCATAAACACGTTATCTTCATTGGGATGCACAATATTGACGCATTGGTTTTGCAAGAA
* * *
1389637 AAGCTTTTCTTGCCATGACTTTT-GTTATAATTTGAGTTTGTATGTTAAATGAAA-AA
261 AAGCTTTTCTTGCCATGA-TTTTCCTCATATTTTGAGTTTGTATGTTAAATGAAACAA
* ** * * * *
1389693 ACTTGGATTCTTGCAAAAATCTTCATACTTTTCATGATTAGGCAACCAAAACACATTCTCCTTTT
1 ACATGGATTCTTATAATAATCTTCATTCTTTCCATGATTAGGCAAACAAAACACATTCTCCTTTT
* ** * * *
1389758 TGGGATACATGATATTAATGCTTTGATTTCAAAAGTAAAGTTTTTTCTCTACCATTTTCCTTAGA
66 TGGGATACACGATATTAATGCTTTGATTTCATGAGAAAAGTTTTTTCTCAACGATTTTCCTTAGA
* * * * * * *
1389823 ATAAAAGTTTATACTTTAAATCAGTCAATCATGGATCTATGAAAAAATCTCCATTATTTCCATGA
131 ATAAAAGTTTATACTTTAAATGAGACAAACATGGATCTACGAAAAAATCTCCATTCTTTCAAAGA
* * *
1389888 TTGGGCACCATAAACACGTTATCTTCAATGGGATGCATAATATTGACGCATTGGTTTTGAAAGAA
196 TTGGGCACCATAAACACGTTATCTTCATTGGGATGCACAATATTGACGCATTGGTTTTGCAAGAA
* * * *
1389953 AAGCTTTCCTTGCCATTATTTTCCTCAAATTTTGAGTTTGTATGTTAAATGAGACAA
261 AAGCTTTTCTTGCCATGATTTTCCTCATATTTTGAGTTTGTATGTTAAATGAAACAA
*
1390010 GCATGGAT
1 ACATGGAT
1390018 CTACAAAAAA
Statistics
Matches: 1393, Mismatches: 187, Indels: 24
0.87 0.12 0.01
Matches are distributed among these distances:
314 160 0.11
315 116 0.08
316 112 0.08
317 441 0.32
318 562 0.40
319 2 0.00
ACGTcount: A:0.33, C:0.17, G:0.14, T:0.36
Consensus pattern (317 bp):
ACATGGATTCTTATAATAATCTTCATTCTTTCCATGATTAGGCAAACAAAACACATTCTCCTTTT
TGGGATACACGATATTAATGCTTTGATTTCATGAGAAAAGTTTTTTCTCAACGATTTTCCTTAGA
ATAAAAGTTTATACTTTAAATGAGACAAACATGGATCTACGAAAAAATCTCCATTCTTTCAAAGA
TTGGGCACCATAAACACGTTATCTTCATTGGGATGCACAATATTGACGCATTGGTTTTGCAAGAA
AAGCTTTTCTTGCCATGATTTTCCTCATATTTTGAGTTTGTATGTTAAATGAAACAA
Done.