Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold286
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1428881
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.33
Warning! 499 characters in sequence are not A, C, G, or T
File 1 of 9
Found at i:2994 original size:28 final size:28
Alignment explanation
Indices: 2963--3016 Score: 74
Period size: 28 Copynumber: 1.9 Consensus size: 28
2953 TCAAGCTTTC
*
2963 CATTTCTCAAG-GGATACTCTAACCCTAT
1 CATTT-TCAAGAGGATACTCCAACCCTAT
*
2991 CATTTTCGAGAGGATACTCCAACCCT
1 CATTTTCAAGAGGATACTCCAACCCT
3017 GTTTTTATTC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 4 0.17
28 19 0.83
ACGTcount: A:0.28, C:0.30, G:0.13, T:0.30
Consensus pattern (28 bp):
CATTTTCAAGAGGATACTCCAACCCTAT
Found at i:3130 original size:80 final size:81
Alignment explanation
Indices: 2967--3130 Score: 176
Period size: 80 Copynumber: 2.0 Consensus size: 81
2957 GCTTTCCATT
* * * *
2967 TCTCAAGGGATACTCTAACCCTATCATTTTCGAGAGGATACTCCAACCCTGTTTTTATTCCTAAG
1 TCTCAAGGGATACTCTAACCCCACCATTTTCAAGAGGATACTCCAACCCTGTTTTTATTCCGAAG
* **
3032 CATTGAATTTCTTTCA
66 CATCGAATTTCTAACA
* *
3048 TCTCAGGGGATACTC-AACCCCACCATTTTCCAAG-GGATACTCTAA-CCTCGTTTTTACTTCTC
1 TCTCAAGGGATACTCTAACCCCACCATTTT-CAAGAGGATACTCCAACCCT-GTTTTTA-TTC-C
3110 GAA-CATCGAATTT-TAACA
62 GAAGCATCGAATTTCTAACA
3128 TCT
1 TCT
3131 TTGGGATACT
Statistics
Matches: 70, Mismatches: 9, Indels: 9
0.80 0.10 0.10
Matches are distributed among these distances:
79 3 0.04
80 35 0.50
81 29 0.41
82 3 0.04
ACGTcount: A:0.26, C:0.27, G:0.12, T:0.35
Consensus pattern (81 bp):
TCTCAAGGGATACTCTAACCCCACCATTTTCAAGAGGATACTCCAACCCTGTTTTTATTCCGAAG
CATCGAATTTCTAACA
Found at i:8279 original size:19 final size:19
Alignment explanation
Indices: 8252--8307 Score: 85
Period size: 19 Copynumber: 2.9 Consensus size: 19
8242 TGTATTGATC
*
8252 CATTATATTGATACATGCT
1 CATTGTATTGATACATGCT
*
8271 CATTGTATTGATACATACT
1 CATTGTATTGATACATGCT
8290 CAATTGTATTGATACATG
1 C-ATTGTATTGATACATG
8308 AAACTGACAG
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
19 18 0.55
20 15 0.45
ACGTcount: A:0.32, C:0.14, G:0.12, T:0.41
Consensus pattern (19 bp):
CATTGTATTGATACATGCT
Found at i:12066 original size:19 final size:20
Alignment explanation
Indices: 12042--12097 Score: 78
Period size: 19 Copynumber: 2.9 Consensus size: 20
12032 TGCATTGATA
12042 CATTGTATTGATACATGC-T
1 CATTGTATTGATACATGCTT
* *
12061 CATTGTATCGATACATACTT
1 CATTGTATTGATACATGCTT
*
12081 AATTGTATTGATACATG
1 CATTGTATTGATACATG
12098 AAACTGGCAG
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
19 16 0.52
20 15 0.48
ACGTcount: A:0.30, C:0.14, G:0.14, T:0.41
Consensus pattern (20 bp):
CATTGTATTGATACATGCTT
Found at i:15271 original size:23 final size:23
Alignment explanation
Indices: 15243--15289 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
15233 CATTCATCAA
15243 TAACTCTCTTATAATGCATTACT
1 TAACTCTCTTATAATGCATTACT
*
15266 TAACTCTCTTATAATGCGTTACT
1 TAACTCTCTTATAATGCATTACT
15289 T
1 T
15290 TCTACCTATA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.28, C:0.21, G:0.06, T:0.45
Consensus pattern (23 bp):
TAACTCTCTTATAATGCATTACT
Found at i:16049 original size:13 final size:13
Alignment explanation
Indices: 16031--16056 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
16021 TACAGCAAGT
16031 ATGTATCGATACA
1 ATGTATCGATACA
16044 ATGTATCGATACA
1 ATGTATCGATACA
16057 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:18304 original size:21 final size:21
Alignment explanation
Indices: 18271--18315 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
18261 TTGCAAGTTG
*
18271 AAATAAAGAAGTTGGCTAATGA
1 AAATAAAGAAGTTAGCTAA-GA
*
18293 AAATAATG-AGTTAGCTAAGA
1 AAATAAAGAAGTTAGCTAAGA
18313 AAA
1 AAA
18316 ATGAAAACTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 9 0.43
22 7 0.33
ACGTcount: A:0.53, C:0.04, G:0.20, T:0.22
Consensus pattern (21 bp):
AAATAAAGAAGTTAGCTAAGA
Found at i:22219 original size:13 final size:13
Alignment explanation
Indices: 22201--22226 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
22191 GATACATTTC
22201 TTGTATCGATACA
1 TTGTATCGATACA
22214 TTGTATCGATACA
1 TTGTATCGATACA
22227 GGGTGATTAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:22390 original size:20 final size:20
Alignment explanation
Indices: 22347--22392 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 20
22337 AAATCTTTTG
22347 CAAAATACTTGTTTTTCACTT
1 CAAAATACTTGTTTTTCAC-T
*
22368 CAAATTACTTCGTTTTTCA-T
1 CAAAATACTT-GTTTTTCACT
22388 CAAAA
1 CAAAA
22393 CCAGCATCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
20 5 0.23
21 9 0.41
22 8 0.36
ACGTcount: A:0.33, C:0.20, G:0.04, T:0.43
Consensus pattern (20 bp):
CAAAATACTTGTTTTTCACT
Found at i:24787 original size:13 final size:13
Alignment explanation
Indices: 24769--24794 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
24759 TACAGCAAGT
24769 ATGTATCGATACA
1 ATGTATCGATACA
24782 ATGTATCGATACA
1 ATGTATCGATACA
24795 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:26346 original size:52 final size:52
Alignment explanation
Indices: 26219--26347 Score: 168
Period size: 52 Copynumber: 2.5 Consensus size: 52
26209 AATGTATCGT
* *
26219 TACATTCTTCATTGTATCGATACATTCTGGGTTTTTGACCTAAATATGTCGA
1 TACATTCTTCATTGTATCGATACATTCTGGGTTTTTGACCAAAATATGTCAA
* * * * *
26271 TACATTATTCATTATTTCGATACATTTTGGGTTTTTGACCAAAATATTTCAA
1 TACATTCTTCATTGTATCGATACATTCTGGGTTTTTGACCAAAATATGTCAA
* * *
26323 TACATTCTTAAATGTATCAATACAT
1 TACATTCTTCATTGTATCGATACAT
26348 CCAGTTAGAT
Statistics
Matches: 64, Mismatches: 13, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
52 64 1.00
ACGTcount: A:0.30, C:0.16, G:0.11, T:0.43
Consensus pattern (52 bp):
TACATTCTTCATTGTATCGATACATTCTGGGTTTTTGACCAAAATATGTCAA
Found at i:33147 original size:30 final size:27
Alignment explanation
Indices: 33077--33160 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
33067 CATTCTTTAC
33077 CCTTCAAAAGCCCACAAGTCAGTGGCAA
1 CCTTC-AAAGCCCACAAGTCAGTGGCAA
* *
33105 CCTTCAAAGCCCACAAATCAGTGGCAC
1 CCTTCAAAGCCCACAAGTCAGTGGCAA
* *
33132 CCTTTTTCGAAGCCCACAAGTCGGTGGCA
1 CC---TTCAAAGCCCACAAGTCAGTGGCA
33161 TCTTTTCCAA
Statistics
Matches: 48, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
27 22 0.46
28 5 0.10
30 21 0.44
ACGTcount: A:0.30, C:0.33, G:0.19, T:0.18
Consensus pattern (27 bp):
CCTTCAAAGCCCACAAGTCAGTGGCAA
Found at i:33276 original size:32 final size:31
Alignment explanation
Indices: 33235--33371 Score: 186
Period size: 32 Copynumber: 4.4 Consensus size: 31
33225 CTCTTTTTCT
*
33235 TCTAAAGCCCACACAAGTTGGTGGCAATCCCC
1 TCTAAAGCCCACACAAGTCGGTGGCAA-CCCC
* * *
33267 TCTAAAGCCCACACAAGGCGGTGGCAGCCCT
1 TCTAAAGCCCACACAAGTCGGTGGCAACCCC
33298 TCTCAAAGCCCACACAAGTCGGTGGCAACCCTC
1 TCT-AAAGCCCACACAAGTCGGTGGCAACCC-C
* *
33331 TCTAAAGCCCACACAAGTCAGTGGCAACCCT
1 TCTAAAGCCCACACAAGTCGGTGGCAACCCC
33362 TCT-AAGCCCA
1 TCTAAAGCCCA
33372 ATATCGCTGG
Statistics
Matches: 94, Mismatches: 9, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
30 7 0.07
31 9 0.10
32 75 0.80
33 3 0.03
ACGTcount: A:0.28, C:0.36, G:0.19, T:0.16
Consensus pattern (31 bp):
TCTAAAGCCCACACAAGTCGGTGGCAACCCC
Found at i:33339 original size:64 final size:63
Alignment explanation
Indices: 33233--33371 Score: 210
Period size: 64 Copynumber: 2.2 Consensus size: 63
33223 CACTCTTTTT
* * *
33233 CTTCTAAAGCCCACACAAGTTGGTGGCAATCCCCTCTAAAGCCCACACAAGGCGGTGGCAGCC
1 CTTCTAAAGCCCACACAAGTCGGTGGCAATCCCCTCTAAAGCCCACACAAGGCAGTGGCAACC
*
33296 CTTCTCAAAGCCCACACAAGTCGGTGGCAA-CCCTCTCTAAAGCCCACACAAGTCAGTGGCAACC
1 CTTCT-AAAGCCCACACAAGTCGGTGGCAATCCC-CTCTAAAGCCCACACAAGGCAGTGGCAACC
33360 CTTCT-AAGCCCA
1 CTTCTAAAGCCCA
33372 ATATCGCTGG
Statistics
Matches: 70, Mismatches: 4, Indels: 5
0.89 0.05 0.06
Matches are distributed among these distances:
62 7 0.10
63 8 0.11
64 55 0.79
ACGTcount: A:0.28, C:0.37, G:0.19, T:0.17
Consensus pattern (63 bp):
CTTCTAAAGCCCACACAAGTCGGTGGCAATCCCCTCTAAAGCCCACACAAGGCAGTGGCAACC
Found at i:33448 original size:55 final size:49
Alignment explanation
Indices: 33364--34013 Score: 460
Period size: 49 Copynumber: 13.6 Consensus size: 49
33354 GCAACCCTTC
33364 TAAGCCCAATATCGCTGGCCTTGAATCAGCACATTGACATCCTTTCTCTCATCTT
1 TAAGCCCAATATCGCTGGCCTTGAATCAGCACATTGACA--C---CT-TCATCTT
* *
33419 TAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
1 TAAGCCCAATATCGCTGGCCTTGAATCAGCACATTGACACCTTCATCTT
* * * *
33468 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACC-T--TC--
1 TAAGCCCAATATCGCTGGCCTTGAATCAGCACATTGACACCTTCATCTT
* * * * * *
33512 -AAGTCCAATATCGCTGGCCTTGAATCCGCATATTGGCAACTTCTTCTT
1 TAAGCCCAATATCGCTGGCCTTGAATCAGCACATTGACACCTTCATCTT
* * * * *
33560 TAAGTCCAATGTAGCTAGCCTTGAATCAGCACATTGGCACC-T--TC--
1 TAAGCCCAATATCGCTGGCCTTGAATCAGCACATTGACACCTTCATCTT
* * * * * * *
33604 -AAGTCCAATATTGCTGGCCTTGAATCTGCATATTGGCAACTTCTTCTT
1 TAAGCCCAATATCGCTGGCCTTGAATCAGCACATTGACACCTTCATCTT
* * *
33652 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGACA----C--CTT
1 TAAGCCCAATATCGCTGGCCTTGAATCAGCACATTGACACCTTCATCTT
* * * *
33695 TAAGCCCAATATCTCTAGCCTTGAATCAGCATATTGGCACCTTCATCTT
1 TAAGCCCAATATCGCTGGCCTTGAATCAGCACATTGACACCTTCATCTT
** * * *
33744 TAAATCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACC-T--TC--
1 TAAGCCCAATATCGCTGGCCTTGAATCAGCACATTGACACCTTCATCTT
* * * * *
33788 -AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCAACTTCTTCTT
1 TAAGCCCAATATCGCTGGCCTTGAATCAGCACATTGACACCTTCATCTT
* * * *
33836 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C--CTT
1 TAAGCCCAATATCGCTGGCCTTGAATCAGCACATTGACACCTTCATCTT
* * * *
33879 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTT
1 TAAGCCCAATATCGCTGGCCTTGAATCAGCACATTGACACC--TT-CATCTT
** * *
33931 TAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCTCATCTT
1 TAAGCCCAATATCGCTGGCCTTGAATCAGCACATTGACA-CC----T-TCATCTT
* *
33986 TAAGCCCAATATCGTTGGCCGTGAATCA
1 TAAGCCCAATATCGCTGGCCTTGAATCA
34014 ACATATTGGC
Statistics
Matches: 496, Mismatches: 62, Indels: 74
0.78 0.10 0.12
Matches are distributed among these distances:
43 179 0.36
44 3 0.01
45 2 0.00
46 12 0.02
47 1 0.00
48 3 0.01
49 183 0.37
50 3 0.01
52 38 0.08
53 3 0.01
55 68 0.14
56 1 0.00
ACGTcount: A:0.25, C:0.26, G:0.17, T:0.32
Consensus pattern (49 bp):
TAAGCCCAATATCGCTGGCCTTGAATCAGCACATTGACACCTTCATCTT
Found at i:33530 original size:43 final size:43
Alignment explanation
Indices: 33469--33921 Score: 474
Period size: 43 Copynumber: 10.0 Consensus size: 43
33459 CTTCATCTTT
*
33469 AAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTC
1 AAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTC
* * *
33512 AAGTCCAATATCGCTGGCCTTGAATCCGCATATTGGCAACTTCTTC
1 AAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGC-AC--CTTC
* *
33558 TTTAAGTCCAATGTAGCTAGCCTTGAATCAGCACATTGGCACCTTC
1 ---AAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTC
* * *
33604 AAGTCCAATATTGCTGGCCTTGAATCTGCATATTGGCAACTTCTTC
1 AAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGC-AC--CTTC
* * *
33650 TTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGACACCTTT
1 ---AAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTC
* ** * *
33696 AAGCCCAATATCTCTAGCCTTGAATCAGCATATTGGCACCTTCATC
1 AAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACC-T--TC
* *
33742 TTTAAATCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTC
1 ---AAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTC
* *
33788 AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCAACTTCTTC
1 AAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGC-AC--CTTC
* *
33834 TTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTT
1 ---AAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTC
*
33880 AAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTT
1 AAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTT
33922 TTCCATCTTT
Statistics
Matches: 341, Mismatches: 45, Indels: 48
0.79 0.10 0.11
Matches are distributed among these distances:
43 171 0.50
44 7 0.02
46 25 0.07
48 7 0.02
49 131 0.38
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.30
Consensus pattern (43 bp):
AAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTC
Found at i:33581 original size:92 final size:92
Alignment explanation
Indices: 33424--33966 Score: 888
Period size: 92 Copynumber: 5.9 Consensus size: 92
33414 ATCTTTAAGC
*
33424 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCT
1 CCAATATCGCTGGCCTTGAATCAGCATATTGGCAACTTCATCTTTAAGTCCAATGTAGCTGGCCT
33489 TGAATCAGCACATTGGCACCTTCAAGT
66 TGAATCAGCACATTGGCACCTTCAAGT
* * *
33516 CCAATATCGCTGGCCTTGAATCCGCATATTGGCAACTTCTTCTTTAAGTCCAATGTAGCTAGCCT
1 CCAATATCGCTGGCCTTGAATCAGCATATTGGCAACTTCATCTTTAAGTCCAATGTAGCTGGCCT
33581 TGAATCAGCACATTGGCACCTTCAAGT
66 TGAATCAGCACATTGGCACCTTCAAGT
* * *
33608 CCAATATTGCTGGCCTTGAATCTGCATATTGGCAACTTCTTCTTTAAGTCCAATGTAGCTGGCCT
1 CCAATATCGCTGGCCTTGAATCAGCATATTGGCAACTTCATCTTTAAGTCCAATGTAGCTGGCCT
* * *
33673 TGAATCAGCACATTGACACCTTTAAGC
66 TGAATCAGCACATTGGCACCTTCAAGT
* * * *
33700 CCAATATCTCTAGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAATCCAATGTAGCTGGCCT
1 CCAATATCGCTGGCCTTGAATCAGCATATTGGCAACTTCATCTTTAAGTCCAATGTAGCTGGCCT
33765 TGAATCAGCACATTGGCACCTTCAAGT
66 TGAATCAGCACATTGGCACCTTCAAGT
*
33792 CCAATATCGCTGGCCTTGAATCAGCATATTGGCAACTTCTTCTTTAAGTCCAATGTAGCTGGCCT
1 CCAATATCGCTGGCCTTGAATCAGCATATTGGCAACTTCATCTTTAAGTCCAATGTAGCTGGCCT
*
33857 TGAATCAGCACATTGGCACCTTTAAGT
66 TGAATCAGCACATTGGCACCTTCAAGT
* * *
33884 CCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTTCAATGTAGCTGG
1 CCAATATCGCTGGCCTTGAATCAGCATATTGGCAAC--TT-CATCTTTAAGTCCAATGTAGCTGG
33949 CCTTGAATCAGCACATTG
63 CCTTGAATCAGCACATTG
33967 ACATCCTTTT
Statistics
Matches: 418, Mismatches: 30, Indels: 3
0.93 0.07 0.01
Matches are distributed among these distances:
92 376 0.90
94 2 0.00
95 40 0.10
ACGTcount: A:0.25, C:0.26, G:0.17, T:0.31
Consensus pattern (92 bp):
CCAATATCGCTGGCCTTGAATCAGCATATTGGCAACTTCATCTTTAAGTCCAATGTAGCTGGCCT
TGAATCAGCACATTGGCACCTTCAAGT
Found at i:33913 original size:276 final size:279
Alignment explanation
Indices: 33416--33975 Score: 991
Period size: 276 Copynumber: 2.0 Consensus size: 279
33406 TTTCTCTCAT
* *
33416 CTTTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTA
1 CTTTAAGCCCAATATCGCTAGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAATCCAATGTA
*
33481 GCTGGCCTTGAATCAGCACATTGGCACCTTCAAGTCCAATATCGCTGGCCTTGAATCCGCATATT
66 GCTGGCCTTGAATCAGCACATTGGCACCTTCAAGTCCAATATCGCTGGCCTTGAATCAGCATATT
33546 GGCAACTTCTTCTTTAAGTCCAATGTAGCTAGCCTTGAATCAGCACATTGGCACCTTCAAGTCCA
131 GGCAACTTCTTCTTTAAGTCCAATGTAGCTAGCCTTGAATCAGCACATTGGCACCTTCAAGTCCA
* * *
33611 ATATTGCTGGCCTTGAATCTGCATATTGGCAAC-TT-CTTCTTTAAGTCCAATGTAGCTGGCCTT
196 ATATAGCTGGCCTTGAATCAGCATATTGGCAACTTTCCATCTTTAAGTCCAATGTAGCTGGCCTT
33674 GAATCAGCACATTGACA-C
261 GAATCAGCACATTGACATC
*
33692 CTTTAAGCCCAATATCTCTAGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAATCCAATGTA
1 CTTTAAGCCCAATATCGCTAGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAATCCAATGTA
33757 GCTGGCCTTGAATCAGCACATTGGCACCTTCAAGTCCAATATCGCTGGCCTTGAATCAGCATATT
66 GCTGGCCTTGAATCAGCACATTGGCACCTTCAAGTCCAATATCGCTGGCCTTGAATCAGCATATT
* *
33822 GGCAACTTCTTCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCA
131 GGCAACTTCTTCTTTAAGTCCAATGTAGCTAGCCTTGAATCAGCACATTGGCACCTTCAAGTCCA
* *
33887 ATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTTCAATGTAGCTGGCCT
196 ATATAGCTGGCCTTGAATCAGCATATTGGCAAC-TTTCCATCTTTAAGTCCAATGTAGCTGGCCT
33952 TGAATCAGCACATTGACATC
260 TGAATCAGCACATTGACATC
33972 CTTT
1 CTTT
33976 TTCTCATCTT
Statistics
Matches: 269, Mismatches: 11, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
276 219 0.81
278 2 0.01
279 43 0.16
280 5 0.02
ACGTcount: A:0.25, C:0.26, G:0.17, T:0.31
Consensus pattern (279 bp):
CTTTAAGCCCAATATCGCTAGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAATCCAATGTA
GCTGGCCTTGAATCAGCACATTGGCACCTTCAAGTCCAATATCGCTGGCCTTGAATCAGCATATT
GGCAACTTCTTCTTTAAGTCCAATGTAGCTAGCCTTGAATCAGCACATTGGCACCTTCAAGTCCA
ATATAGCTGGCCTTGAATCAGCATATTGGCAACTTTCCATCTTTAAGTCCAATGTAGCTGGCCTT
GAATCAGCACATTGACATC
Found at i:33954 original size:52 final size:53
Alignment explanation
Indices: 33876--34029 Score: 193
Period size: 52 Copynumber: 2.9 Consensus size: 53
33866 ACATTGGCAC
33876 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTC-CAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCTCAT
* * * *
33928 CTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCTCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-CC-TTTTCTCAT
* * * * * *
33983 CTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTGGCATCTTT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTT
34030 ATCACTTTTC
Statistics
Matches: 85, Mismatches: 14, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
52 38 0.45
53 5 0.06
54 6 0.07
55 36 0.42
ACGTcount: A:0.25, C:0.24, G:0.16, T:0.36
Consensus pattern (53 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCTCAT
Found at i:34678 original size:13 final size:13
Alignment explanation
Indices: 34660--34684 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
34650 ATCACTTAAA
34660 TGTATCGATACAT
1 TGTATCGATACAT
34673 TGTATCGATACA
1 TGTATCGATACA
34685 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:40522 original size:29 final size:29
Alignment explanation
Indices: 40417--40571 Score: 150
Period size: 29 Copynumber: 5.3 Consensus size: 29
40407 TAGTGGAGTA
* * *
40417 CCTTTTCAAAGTCTAAGACTCAGTGGCAT
1 CCTTTTCAAAGTCCACGACTTAGTGGCAT
** *
40446 CCATTTTTTAAGTCCATGACTTAGTGGCAT
1 CC-TTTTCAAAGTCCACGACTTAGTGGCAT
* ** * * *
40476 CATTTTTTAAGACAACGACTTAGTGGGAT
1 CCTTTTCAAAGTCCACGACTTAGTGGCAT
* *
40505 CCTTTTCAAAGTCCACGACTCAATGGCAT
1 CCTTTTCAAAGTCCACGACTTAGTGGCAT
* *
40534 CTTTTTCAAAGTCCATGACTTAGTGGCA-
1 CCTTTTCAAAGTCCACGACTTAGTGGCAT
40562 CCTTTTCAAA
1 CCTTTTCAAA
40572 TACTTTTCGA
Statistics
Matches: 102, Mismatches: 23, Indels: 3
0.80 0.18 0.02
Matches are distributed among these distances:
28 9 0.09
29 70 0.69
30 23 0.23
ACGTcount: A:0.27, C:0.23, G:0.16, T:0.34
Consensus pattern (29 bp):
CCTTTTCAAAGTCCACGACTTAGTGGCAT
Found at i:40650 original size:30 final size:30
Alignment explanation
Indices: 40607--40708 Score: 113
Period size: 29 Copynumber: 3.5 Consensus size: 30
40597 GACATCCTTT
40607 TTTTTCAAAGTCCATGACTTAATGGCATCA
1 TTTTTCAAAGTCCATGACTTAATGGCATCA
* * *
40637 TTCTTT-TAAGTCCATGACTTAGTGACAT-A
1 TT-TTTCAAAGTCCATGACTTAATGGCATCA
*
40666 TTTTTCAAAGTCCATGACTT-ATGGGCATCC
1 TTTTTCAAAGTCCATGACTTAAT-GGCATCA
*
40696 CTTTT-AAAGTCCA
1 TTTTTCAAAGTCCA
40709 CAACTCTGTG
Statistics
Matches: 60, Mismatches: 8, Indels: 9
0.78 0.10 0.12
Matches are distributed among these distances:
28 4 0.07
29 28 0.47
30 25 0.42
31 3 0.05
ACGTcount: A:0.27, C:0.21, G:0.14, T:0.38
Consensus pattern (30 bp):
TTTTTCAAAGTCCATGACTTAATGGCATCA
Found at i:40686 original size:29 final size:30
Alignment explanation
Indices: 40607--40686 Score: 110
Period size: 30 Copynumber: 2.7 Consensus size: 30
40597 GACATCCTTT
*
40607 TTTTTCAAAGTCCATGACTTAATGGCATCA
1 TTTTTCAAAGTCCATGACTTAATGACATCA
* *
40637 TTCTTT-TAAGTCCATGACTTAGTGACAT-A
1 TT-TTTCAAAGTCCATGACTTAATGACATCA
40666 TTTTTCAAAGTCCATGACTTA
1 TTTTTCAAAGTCCATGACTTA
40687 TGGGCATCCC
Statistics
Matches: 44, Mismatches: 4, Indels: 5
0.83 0.08 0.09
Matches are distributed among these distances:
28 3 0.07
29 17 0.39
30 21 0.48
31 3 0.07
ACGTcount: A:0.29, C:0.19, G:0.12, T:0.40
Consensus pattern (30 bp):
TTTTTCAAAGTCCATGACTTAATGACATCA
Found at i:40853 original size:29 final size:28
Alignment explanation
Indices: 40694--40855 Score: 119
Period size: 28 Copynumber: 5.6 Consensus size: 28
40684 TTATGGGCAT
*
40694 CCCTTTTAAAGTCCACAACTCTGTGG-C
1 CCCTTTTAAAGTCCACAACTCCGTGGAC
* * * * * *
40721 GCACTTTTAAAGTCAATAACTTCGCGGTGC
1 -CCCTTTTAAAGTCCACAACTCCGTGG-AC
* * **
40751 ACCTTTTAAAGTCCACAACTCCATGGTG
1 CCCTTTTAAAGTCCACAACTCCGTGGAC
* **
40779 CCCTTTTAAAGTCTACAACTCTATGGCAC
1 CCCTTTTAAAGTCCACAACTCCGTGG-AC
**
40808 CTTTTTTTTAAAGTCCACAACTCCGTGGAAC
1 C--CCTTTTAAAGTCCACAACTCCGTGG-AC
40839 CCCTTTTAAAGTCCACA
1 CCCTTTTAAAGTCCACA
40856 CAAGTCAGTG
Statistics
Matches: 101, Mismatches: 28, Indels: 9
0.73 0.20 0.07
Matches are distributed among these distances:
28 43 0.43
29 34 0.34
30 1 0.01
31 23 0.23
ACGTcount: A:0.27, C:0.29, G:0.14, T:0.31
Consensus pattern (28 bp):
CCCTTTTAAAGTCCACAACTCCGTGGAC
Found at i:40858 original size:31 final size:30
Alignment explanation
Indices: 40813--40909 Score: 81
Period size: 33 Copynumber: 3.1 Consensus size: 30
40803 GGCACCTTTT
*
40813 TTTTAAAGTC-CACAACTCCGTGG-AACCCC
1 TTTTAAAGTCACACAACTCAGTGGTAA-CCC
*
40842 TTTTAAAGTCCACACAAGTCAGTGGTAACCC
1 TTTTAAAGT-CACACAACTCAGTGGTAACCC
* ** *
40873 TTTTCAAAAGTTCACACAAGTTGGTGGCAACCC
1 TTTT--AAAG-TCACACAACTCAGTGGTAACCC
40906 TTTT
1 TTTT
40910 CAAAAACCTC
Statistics
Matches: 57, Mismatches: 5, Indels: 8
0.81 0.07 0.11
Matches are distributed among these distances:
29 9 0.16
30 1 0.02
31 18 0.32
32 2 0.04
33 26 0.46
34 1 0.02
ACGTcount: A:0.29, C:0.27, G:0.15, T:0.29
Consensus pattern (30 bp):
TTTTAAAGTCACACAACTCAGTGGTAACCC
Found at i:40889 original size:33 final size:33
Alignment explanation
Indices: 40852--41000 Score: 140
Period size: 33 Copynumber: 4.5 Consensus size: 33
40842 TTTTAAAGTC
* *
40852 CACACAAGTCAGTGGTAACCCTTTTCAAAAGTT
1 CACACAAGTCAGTGGCAACCCTTTTCAAAAGCT
** *
40885 CACACAAGTTGGTGGCAACCCTTTTCAAAAACCT
1 CACACAAGTCAGTGGCAACCCTTTTC-AAAAGCT
* * * *
40919 CACATAAATCAGT-GCTAACCCTTTTTAAAAGCC
1 CACACAAGTCAGTGGC-AACCCTTTTCAAAAGCT
* ** * *
40952 CACATAAGTTGGTGGCAACCC-TCTCAAAAGAT
1 CACACAAGTCAGTGGCAACCCTTTTCAAAAGCT
40984 CACACAAGTCAGTGGCA
1 CACACAAGTCAGTGGCA
41001 TCTCCTTCTA
Statistics
Matches: 91, Mismatches: 22, Indels: 7
0.76 0.18 0.06
Matches are distributed among these distances:
32 21 0.23
33 45 0.49
34 25 0.27
ACGTcount: A:0.34, C:0.27, G:0.15, T:0.23
Consensus pattern (33 bp):
CACACAAGTCAGTGGCAACCCTTTTCAAAAGCT
Found at i:41141 original size:52 final size:52
Alignment explanation
Indices: 41083--41216 Score: 144
Period size: 52 Copynumber: 2.6 Consensus size: 52
41073 CCAATGTCGT
* * * *
41083 TGGCCTTGAATCAGCATATTGGCACTCTTTTTATCTTTTAGTCCGATGTTGA
1 TGGCCTTGAATCAGCATATTGGCACTCTTTTCATCTTTAAGACCGATATTGA
* * * * * * *
41135 TGGCCTTGAATTAGCACATTGGCAGTCCTATCATCTTTAAGACTGATATTGT
1 TGGCCTTGAATCAGCATATTGGCACTCTTTTCATCTTTAAGACCGATATTGA
* *
41187 TGGCCTTGAATCAGTATATTAGCAC-CTTTT
1 TGGCCTTGAATCAGCATATTGGCACTCTTTT
41217 ATCACTTTTA
Statistics
Matches: 64, Mismatches: 18, Indels: 1
0.77 0.22 0.01
Matches are distributed among these distances:
51 3 0.05
52 61 0.95
ACGTcount: A:0.22, C:0.19, G:0.19, T:0.40
Consensus pattern (52 bp):
TGGCCTTGAATCAGCATATTGGCACTCTTTTCATCTTTAAGACCGATATTGA
Found at i:42106 original size:13 final size:13
Alignment explanation
Indices: 42088--42113 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
42078 CAATTTTTTG
42088 TGTATCGATACAT
1 TGTATCGATACAT
42101 TGTATCGATACAT
1 TGTATCGATACAT
42114 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:44510 original size:21 final size:21
Alignment explanation
Indices: 44486--44532 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 21
44476 TTTGATGCTG
44486 ATTTTG-A-TGAAAAACGAAGT
1 ATTTTGAAGTGAAAAAC-AAGT
44506 -TATTTGAAGTGAAAAACAAGT
1 AT-TTTGAAGTGAAAAACAAGT
44527 ATTTTG
1 ATTTTG
44533 CAAAAGATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 7
0.77 0.00 0.23
Matches are distributed among these distances:
19 1 0.04
20 4 0.17
21 9 0.39
22 9 0.39
ACGTcount: A:0.43, C:0.04, G:0.19, T:0.34
Consensus pattern (21 bp):
ATTTTGAAGTGAAAAACAAGT
Found at i:44671 original size:13 final size:13
Alignment explanation
Indices: 44653--44691 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
44643 ATAATCACCC
*
44653 TGTATCGATACAG
1 TGTATCGATACAA
44666 TGTATCGATACAA
1 TGTATCGATACAA
44679 TGTATCGATACAA
1 TGTATCGATACAA
44692 GAAAATGTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:44700 original size:18 final size:20
Alignment explanation
Indices: 44678--44753 Score: 75
Period size: 25 Copynumber: 3.6 Consensus size: 20
44668 TATCGATACA
44678 ATGTATCGATACA-AGAAA-
1 ATGTATCGATACACAGAAAC
* *
44696 ATGTATCGATACATAGAATTTCCAG
1 ATGTATCGATACACAGAA-----AC
44721 ATGTATCGATACACAGAAAC
1 ATGTATCGATACACAGAAAC
44741 ATGTATCGATACA
1 ATGTATCGATACA
44754 TTTTGGACAT
Statistics
Matches: 49, Mismatches: 2, Indels: 12
0.78 0.03 0.19
Matches are distributed among these distances:
18 13 0.27
19 4 0.08
20 14 0.29
24 1 0.02
25 17 0.35
ACGTcount: A:0.42, C:0.16, G:0.16, T:0.26
Consensus pattern (20 bp):
ATGTATCGATACACAGAAAC
Found at i:46788 original size:15 final size:15
Alignment explanation
Indices: 46768--46798 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
46758 ATTTTGTTTG
*
46768 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
46783 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
46798 G
1 G
46799 GACATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Found at i:48631 original size:21 final size:21
Alignment explanation
Indices: 48602--48646 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
48592 AAGTTTTCAT
*
48602 TTTTCTTAGCTAAC-TCATTA
1 TTTTCTTAGCCAACTTCATTA
*
48622 TTTTCATTAGCCAACTTCCTTA
1 TTTTC-TTAGCCAACTTCATTA
48644 TTT
1 TTT
48647 CAACTTGCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 8 0.38
22 8 0.38
ACGTcount: A:0.22, C:0.22, G:0.04, T:0.51
Consensus pattern (21 bp):
TTTTCTTAGCCAACTTCATTA
Found at i:50882 original size:13 final size:13
Alignment explanation
Indices: 50864--50889 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
50854 CAATTTTTTG
50864 TGTATCGATACAT
1 TGTATCGATACAT
50877 TGTATCGATACAT
1 TGTATCGATACAT
50890 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:51668 original size:52 final size:52
Alignment explanation
Indices: 51447--51732 Score: 142
Period size: 52 Copynumber: 5.5 Consensus size: 52
51437 CCCAATGTTC
* * * ** * * * *
51447 CTGGCTTTGAATCAGCACATTGGCGCTCTTTTTATCTTTAAGTCTAATGTCG
1 CTGGCCTTAAATCAGCACATTGGCACTCTCATCACCTTTAAGTCTAATATCA
** * ** * * * *
51499 CTGGCCTTGCATTAGCACATTGGCACTCTTGTCATCTTTAAGACCAATATCG
1 CTGGCCTTAAATCAGCACATTGGCACTCTCATCACCTTTAAGTCTAATATCA
* * * * * * * * * * * **
51551 TTGG-CTTGAATCAGTATATTGGCACCTTTTATAACTTTTAAGCCCAATTTTG
1 CTGGCCTTAAATCAGCACATTGGCA-CTCTCATCACCTTTAAGTCTAATATCA
* * * *
51603 CTAGCCTTTAATCAGCACATTGGCATTCTCATCACCTTTAAGTCTAATGTCA
1 CTGGCCTTAAATCAGCACATTGGCACTCTCATCACCTTTAAGTCTAATATCA
* * * *** *
51655 CTGGCCTTAAATCAGCATATTGGTACTCTCGTTTTCTTTAAGTCTAATATCG
1 CTGGCCTTAAATCAGCACATTGGCACTCTCATCACCTTTAAGTCTAATATCA
* * * *
51707 TTGGCCTTAAATTAGCAAATCGGCAC
1 CTGGCCTTAAATCAGCACATTGGCAC
51733 CTTGCATATG
Statistics
Matches: 179, Mismatches: 53, Indels: 4
0.76 0.22 0.02
Matches are distributed among these distances:
51 16 0.09
52 146 0.82
53 17 0.09
ACGTcount: A:0.24, C:0.23, G:0.16, T:0.37
Consensus pattern (52 bp):
CTGGCCTTAAATCAGCACATTGGCACTCTCATCACCTTTAAGTCTAATATCA
Found at i:52699 original size:52 final size:52
Alignment explanation
Indices: 52609--52779 Score: 222
Period size: 52 Copynumber: 3.3 Consensus size: 52
52599 CTAGAAAGAA
* *
52609 TGTATCGATACATTATAGG--TTTGATCCAAATGTATCGATACATTCTTCAT
1 TGTATCGATACATTCTAGGTTTTTGACCCAAATGTATCGATACATTCTTCAT
* * * *
52659 TATATCGATACATTCTAGGTTTTTGACCCAAATGTATCGATATATTATTAAT
1 TGTATCGATACATTCTAGGTTTTTGACCCAAATGTATCGATACATTCTTCAT
* * * *
52711 TGTATCTATACATTCTAGGTTTTTGACCTAAATGTATTGATACATTCTTCAA
1 TGTATCGATACATTCTAGGTTTTTGACCCAAATGTATCGATACATTCTTCAT
*
52763 TGCATCGATACA-TCTAG
1 TGTATCGATACATTCTAG
52780 TTAAATTTAA
Statistics
Matches: 103, Mismatches: 16, Indels: 3
0.84 0.13 0.02
Matches are distributed among these distances:
50 17 0.17
51 5 0.05
52 81 0.79
ACGTcount: A:0.30, C:0.16, G:0.13, T:0.41
Consensus pattern (52 bp):
TGTATCGATACATTCTAGGTTTTTGACCCAAATGTATCGATACATTCTTCAT
Found at i:57297 original size:20 final size:19
Alignment explanation
Indices: 57272--57343 Score: 65
Period size: 20 Copynumber: 3.7 Consensus size: 19
57262 AAACCTTGTA
*
57272 TGTATCGATACATTATGCTT
1 TGTATCGATACATTAT-CAT
* * *
57292 TGTATCGAAAGATGATCAT
1 TGTATCGATACATTATCAT
*
57311 TGTATTGATACATT-TACAAT
1 TGTATCGATACATTAT-C-AT
57331 TGTATCGATACAT
1 TGTATCGATACAT
57344 GAAACTGGCA
Statistics
Matches: 41, Mismatches: 9, Indels: 4
0.76 0.17 0.07
Matches are distributed among these distances:
18 1 0.02
19 13 0.32
20 27 0.66
ACGTcount: A:0.32, C:0.12, G:0.15, T:0.40
Consensus pattern (19 bp):
TGTATCGATACATTATCAT
Found at i:57411 original size:33 final size:33
Alignment explanation
Indices: 57374--57504 Score: 203
Period size: 33 Copynumber: 4.0 Consensus size: 33
57364 TATCACTGTT
* *
57374 TGTATAGATACATGGCATATTGTATCGATACAA
1 TGTATCGATACATGGCACATTGTATCGATACAA
57407 TGTATCGATACATGGCACATTGTATCGATACAA
1 TGTATCGATACATGGCACATTGTATCGATACAA
*
57440 TGTACCGATACATGGCACATTGTATCGATACAA
1 TGTATCGATACATGGCACATTGTATCGATACAA
57473 TGTATCGATACATGATG-A-ATTGTATCGATACA
1 TGTATCGATACATG--GCACATTGTATCGATACA
57505 TTGATTCAAA
Statistics
Matches: 92, Mismatches: 4, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
33 90 0.98
34 1 0.01
35 1 0.01
ACGTcount: A:0.34, C:0.16, G:0.18, T:0.31
Consensus pattern (33 bp):
TGTATCGATACATGGCACATTGTATCGATACAA
Found at i:57412 original size:13 final size:13
Alignment explanation
Indices: 57394--57484 Score: 53
Period size: 13 Copynumber: 7.9 Consensus size: 13
57384 CATGGCATAT
57394 TGTATCGATACAA
1 TGTATCGATACAA
57407 TGTATCGATAC-A
1 TGTATCGATACAA
* *
57419 TG----G-CACAT
1 TGTATCGATACAA
57427 TGTATCGATACAA
1 TGTATCGATACAA
*
57440 TGTACCGATAC-A
1 TGTATCGATACAA
* *
57452 TG----G-CACAT
1 TGTATCGATACAA
57460 TGTATCGATACAA
1 TGTATCGATACAA
57473 TGTATCGATACA
1 TGTATCGATACA
57485 TGATGAATTG
Statistics
Matches: 57, Mismatches: 9, Indels: 24
0.63 0.10 0.27
Matches are distributed among these distances:
7 4 0.07
8 6 0.11
12 8 0.14
13 39 0.68
ACGTcount: A:0.34, C:0.19, G:0.18, T:0.30
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:57432 original size:20 final size:19
Alignment explanation
Indices: 57373--57505 Score: 70
Period size: 20 Copynumber: 7.7 Consensus size: 19
57363 CTATCACTGT
*
57373 TTGTATAGATACATGGCATA
1 TTGTATCGATACATGGCA-A
57393 TTGTATCGAT--A---CAA
1 TTGTATCGATACATGGCAA
57407 -TGTATCGATACATGGCACA
1 TTGTATCGATACATGGCA-A
57426 TTGTATCGAT--A---CAA
1 TTGTATCGATACATGGCAA
*
57440 -TGTACCGATACATGGCACA
1 TTGTATCGATACATGGCA-A
57459 TTGTATCGAT--A---CAA
1 TTGTATCGATACATGGCAA
57473 -TGTATCGATACATGATG-AA
1 TTGTATCGATACATG--GCAA
57492 TTGTATCGATACAT
1 TTGTATCGATACAT
57506 TGATTCAAAC
Statistics
Matches: 88, Mismatches: 3, Indels: 44
0.65 0.02 0.33
Matches are distributed among these distances:
13 26 0.30
14 3 0.03
15 9 0.10
18 7 0.08
19 4 0.05
20 39 0.44
ACGTcount: A:0.34, C:0.16, G:0.18, T:0.32
Consensus pattern (19 bp):
TTGTATCGATACATGGCAA
Found at i:59104 original size:3 final size:3
Alignment explanation
Indices: 59090--59120 Score: 53
Period size: 3 Copynumber: 10.3 Consensus size: 3
59080 CATTAAAGAC
*
59090 GAT GAA GAT GAT GAT GAT GAT GAT GAT GAT G
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT G
59121 TTGACTCAGA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.35, C:0.00, G:0.35, T:0.29
Consensus pattern (3 bp):
GAT
Found at i:63651 original size:13 final size:13
Alignment explanation
Indices: 63633--63659 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
63623 ACAATGTTCT
63633 TTATATCGATACA
1 TTATATCGATACA
63646 TTATATCGATACA
1 TTATATCGATACA
63659 T
1 T
63660 GAGTTACTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.37, C:0.15, G:0.07, T:0.41
Consensus pattern (13 bp):
TTATATCGATACA
Found at i:63773 original size:10 final size:11
Alignment explanation
Indices: 63752--63792 Score: 50
Period size: 10 Copynumber: 3.9 Consensus size: 11
63742 CCCTAACGAT
63752 TTTTCATCAAA
1 TTTTCATCAAA
63763 TTTTC-TCAAA
1 TTTTCATCAAA
*
63773 TTTTC-TTAAA
1 TTTTCATCAAA
*
63783 ATTTCATCAA
1 TTTTCATCAA
63793 TTCTACATCA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
10 18 0.69
11 8 0.31
ACGTcount: A:0.34, C:0.17, G:0.00, T:0.49
Consensus pattern (11 bp):
TTTTCATCAAA
Found at i:65180 original size:33 final size:33
Alignment explanation
Indices: 65143--65207 Score: 87
Period size: 33 Copynumber: 2.0 Consensus size: 33
65133 AGAGTTGATG
*
65143 ACTTCACTTTCGCAGCACAT-GAGTGAGCACTTC
1 ACTTCACTCTCGCAGCACATGGA-TGAGCACTTC
* *
65176 ACTTCACTCTCGCTGTACATGGATGAGCACTT
1 ACTTCACTCTCGCAGCACATGGATGAGCACTT
65208 TAGTGCACTT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
33 26 0.93
34 2 0.07
ACGTcount: A:0.23, C:0.29, G:0.18, T:0.29
Consensus pattern (33 bp):
ACTTCACTCTCGCAGCACATGGATGAGCACTTC
Found at i:66033 original size:21 final size:22
Alignment explanation
Indices: 65991--66033 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
65981 GAGTTATGAA
**
65991 CAAATGTTTTTGAACTTTAAAT
1 CAAATGTTTTTGAACTGGAAAT
*
66013 CAAATGTTTTT-AAGTGGAAAT
1 CAAATGTTTTTGAACTGGAAAT
66034 ATTCCAAAGT
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.37, C:0.07, G:0.14, T:0.42
Consensus pattern (22 bp):
CAAATGTTTTTGAACTGGAAAT
Found at i:69072 original size:21 final size:21
Alignment explanation
Indices: 69031--69074 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
69021 CTCCCCTTTA
* *
69031 TCTCCCCCGTTTATTAATAAT
1 TCTCCCCCGTTAATCAATAAT
69052 TCTCCCCC-TTAATCAAGTAAT
1 TCTCCCCCGTTAATCAA-TAAT
69073 TC
1 TC
69075 ATATCAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 6 0.30
21 14 0.70
ACGTcount: A:0.25, C:0.32, G:0.05, T:0.39
Consensus pattern (21 bp):
TCTCCCCCGTTAATCAATAAT
Found at i:73278 original size:20 final size:20
Alignment explanation
Indices: 73253--73428 Score: 111
Period size: 20 Copynumber: 8.8 Consensus size: 20
73243 TTTTCACAAT
73253 TTGTATCGATACATTGTTCA
1 TTGTATCGATACATTGTTCA
*
73273 TTGTATCGATACATTGCTCA
1 TTGTATCGATACATTGTTCA
73293 TTGTATCGAT--A----T-A
1 TTGTATCGATACATTGTTCA
*
73306 TTATATCGATACATTCTGGGTTTACCCAA
1 TTGTATCGATACA-T-T--G-TT---C-A
* *
73335 ATGTATCGATACATT-TGCA
1 TTGTATCGATACATTGTTCA
*
73354 TTGTATCGATACATTGCTCA
1 TTGTATCGATACATTGTTCA
* *
73374 TTGTATTGATACATTGCTCA
1 TTGTATCGATACATTGTTCA
*
73394 TTGTATCGATACGTT-TT-A
1 TTGTATCGATACATTGTTCA
73412 TAATGTATCGATACATT
1 T--TGTATCGATACATT
73429 CAGGCATTTT
Statistics
Matches: 124, Mismatches: 13, Indels: 38
0.71 0.07 0.22
Matches are distributed among these distances:
13 10 0.08
14 1 0.01
15 1 0.01
18 3 0.02
19 16 0.13
20 77 0.62
23 1 0.01
24 1 0.01
27 1 0.01
28 1 0.01
29 12 0.10
ACGTcount: A:0.27, C:0.16, G:0.15, T:0.42
Consensus pattern (20 bp):
TTGTATCGATACATTGTTCA
Found at i:75784 original size:51 final size:50
Alignment explanation
Indices: 75717--75945 Score: 218
Period size: 51 Copynumber: 4.6 Consensus size: 50
75707 AAATTTCTAG
* * *
75717 ATTTTTCAT-CTCGGGGATACTCCAATCCCGGTTTCATTT-TCAAAACATCA
1 ATTTTTCATAATCGGGGATACTCCAA-CCCGATTTTATTTCT-AAAACATCA
* * *
75767 ATTTTTCTTAATCGGGGATACTCCAACTCCGATTTTATTTCTAAAACACCC
1 ATTTTTCATAATCGGGGATACTCCAAC-CCGATTTTATTTCTAAAACATCA
* * * * * *
75818 ATTTTCCATAATTGGGGATACTCTAACTCCAATTTTATTTCCAAAACA-CTG
1 ATTTTTCATAATCGGGGATACTCCAAC-CCGATTTTATTTCTAAAACATC-A
* * * *
75869 ACTTTTCACAATCAGGGATACTCCAACCTCAATTTTATTTCTAAAACATCA
1 ATTTTTCATAATCGGGGATACTCCAACC-CGATTTTATTTCTAAAACATCA
75920 ATTTTTC---ATCGGGGATACTCCAACCC
1 ATTTTTCATAATCGGGGATACTCCAACCC
75946 CGTTTTTTTT
Statistics
Matches: 150, Mismatches: 23, Indels: 15
0.80 0.12 0.08
Matches are distributed among these distances:
47 1 0.01
48 17 0.11
50 11 0.07
51 119 0.79
52 2 0.01
ACGTcount: A:0.29, C:0.25, G:0.10, T:0.35
Consensus pattern (50 bp):
ATTTTTCATAATCGGGGATACTCCAACCCGATTTTATTTCTAAAACATCA
Found at i:75981 original size:76 final size:76
Alignment explanation
Indices: 75883--76132 Score: 288
Period size: 76 Copynumber: 3.2 Consensus size: 76
75873 TTCACAATCA
* * * *
75883 GGGATACTCCAACCTCAATTTTATTTCTAAAACATCAATTTTTCATCGGGGATACTCCAACCCCG
1 GGGATACTCCAACCCCGATTTTATTTCTAAAACATCAATTTTTCATCGGGGGTACTCCAACCCCA
* *
75948 TTTTTTTTGAG
66 TTATTTTCGAG
* *
75959 GGGATACTCCAACCCCGATTTTATTTCAAAAACATCAATTTTTCATCGGGGGTACTCCAACCTCA
1 GGGATACTCCAACCCCGATTTTATTTCTAAAACATCAATTTTTCATCGGGGGTACTCCAACCCCA
76024 TTATTTTCGAG
66 TTATTTTCGAG
* ** * * *
76035 GGGATACTCCAACCCTGGCTTTATATCTAAGAACACCCATTTTTCCATAATCGGGGGTACTCCAA
1 GGGATACTCCAACCCCGATTTTATTTCTAA-AACATCAATTTTT-C---ATCGGGGGTACTCCAA
76100 CCCCATTATTTCGTCGA-
61 CCCCATTATTT--TCGAG
*
76117 -GGATACTCCAATCCCG
1 GGGATACTCCAACCCCG
76133 TTATTTTCGA
Statistics
Matches: 149, Mismatches: 18, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
76 93 0.62
77 11 0.07
78 1 0.01
81 40 0.27
83 4 0.03
ACGTcount: A:0.26, C:0.27, G:0.15, T:0.32
Consensus pattern (76 bp):
GGGATACTCCAACCCCGATTTTATTTCTAAAACATCAATTTTTCATCGGGGGTACTCCAACCCCA
TTATTTTCGAG
Found at i:76125 original size:28 final size:27
Alignment explanation
Indices: 76092--76157 Score: 80
Period size: 28 Copynumber: 2.4 Consensus size: 27
76082 TAATCGGGGG
76092 TACTCCAACCCCATTATTTCGTCGA-GGA
1 TACTCCAACCCCATTATTT--TCGAGGGA
* *
76120 TACTCCAATCCCGTTATTTTCGAGGGGA
1 TACTCCAACCCCATTATTTTCGA-GGGA
76148 TACTCCAACC
1 TACTCCAACC
76158 TCGATTTTTA
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
26 4 0.12
28 29 0.88
ACGTcount: A:0.24, C:0.32, G:0.15, T:0.29
Consensus pattern (27 bp):
TACTCCAACCCCATTATTTTCGAGGGA
Found at i:76151 original size:109 final size:107
Alignment explanation
Indices: 76011--76238 Score: 284
Period size: 109 Copynumber: 2.1 Consensus size: 107
76001 TCATCGGGGG
* * *
76011 TACTCCAACCTCATTATTTTCGAGGGGATACTCCAACC-CTG-GCTTTATATCTAAGAACACCCA
1 TACTCCAACC-CGTTATTTTCGAGGGGATACTCCAACCTC-GAGCTTTATATCCAA-AACACCAA
* *
76074 TTTTTC-CATAATCGGGGGTACTCCAACCCCATTA-TTTCGTCGAGGA
63 TTTCTCGC--AATCGGGGATACTCCAACCCCATTATTTTCG-CGAGGA
** *
76120 TACTCCAATCCCGTTATTTTCGAGGGGATACTCCAACCTCGATTTTTATTTCCAAAACACCAATT
1 TACTCCAA-CCCGTTATTTTCGAGGGGATACTCCAACCTCGAGCTTTATATCCAAAACACCAATT
*
76185 TCTCGCAATCGGGGATACTCCAACCCCGTTATTTTCGCGAGGA
65 TCTCGCAATCGGGGATACTCCAACCCCATTATTTTCGCGAGGA
76228 TACTCCAACCC
1 TACTCCAACCC
76239 CGATTTTAGT
Statistics
Matches: 105, Mismatches: 9, Indels: 12
0.83 0.07 0.10
Matches are distributed among these distances:
107 3 0.03
108 37 0.35
109 52 0.50
110 13 0.12
ACGTcount: A:0.25, C:0.30, G:0.15, T:0.30
Consensus pattern (107 bp):
TACTCCAACCCGTTATTTTCGAGGGGATACTCCAACCTCGAGCTTTATATCCAAAACACCAATTT
CTCGCAATCGGGGATACTCCAACCCCATTATTTTCGCGAGGA
Found at i:76295 original size:79 final size:77
Alignment explanation
Indices: 76117--76364 Score: 284
Period size: 80 Copynumber: 3.1 Consensus size: 77
76107 ATTTCGTCGA
*
76117 GGATACTCCAATCCCGTTATTTTCGAGGGGATACTCCAACCTCGATTTTTATTTCCAAAACAC-C
1 GGATACTCCAA-CCCGTTATTTTCGAGGGGATACTCCAACCTCGATTTTTATTT-CAAAACACTG
* **
76181 AATTTCTCGCAATCGG
64 ATTTTCT-ATAATC-G
* * * *
76197 GGATACTCCAACCCCGTTATTTTCGCGAGGATACTCCAACCCCGA-TTTTAGTTTCAAAATACTG
1 GGATACTCCAA-CCCGTTATTTTCGAGGGGATACTCCAACCTCGATTTTTA-TTTCAAAACACTG
76261 ATTTTCTATAATCAG
64 ATTTTCTATAATC-G
* *
76276 GGATACTCCAACCCTGTTATTTTCGAGGGGATACTCTAACCTCGATTTTTATTTCTAGAACACCT
1 GGATACTCCAACCC-GTTATTTTCGAGGGGATACTCCAACCTCGATTTTTATTTC-AAAACA-CT
*
76341 GATTTTCCATAATCG
63 GATTTTCTATAATCG
76356 GAGATACTC
1 G-GATACTC
76365 TAGCCCCGTT
Statistics
Matches: 144, Mismatches: 17, Indels: 13
0.83 0.10 0.07
Matches are distributed among these distances:
78 3 0.02
79 58 0.40
80 61 0.42
81 22 0.15
ACGTcount: A:0.27, C:0.25, G:0.15, T:0.33
Consensus pattern (77 bp):
GGATACTCCAACCCGTTATTTTCGAGGGGATACTCCAACCTCGATTTTTATTTCAAAACACTGAT
TTTCTATAATCG
Found at i:78452 original size:4 final size:4
Alignment explanation
Indices: 78443--78467 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
78433 TATTTTGAGG
78443 TATT TATT TATT TATT TATT TATT T
1 TATT TATT TATT TATT TATT TATT T
78468 GTTTTATCGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TATT
Found at i:86856 original size:23 final size:23
Alignment explanation
Indices: 86823--86898 Score: 75
Period size: 23 Copynumber: 3.3 Consensus size: 23
86813 ACATGAATAG
86823 TATGAACAGTGATTTTATCGATA
1 TATGAACAGTGATTTTATCGATA
* ***
86846 TATGAATAGTGA-TACGT-GAATA
1 TATGAACAGTGATTTTATCG-ATA
86868 GTTATGAACAGTGATTTTATCGATA
1 --TATGAACAGTGATTTTATCGATA
86893 TATGAA
1 TATGAA
86899 TACTGATACG
Statistics
Matches: 40, Mismatches: 8, Indels: 10
0.69 0.14 0.17
Matches are distributed among these distances:
21 1 0.03
22 5 0.12
23 17 0.43
24 11 0.28
25 5 0.12
26 1 0.03
ACGTcount: A:0.37, C:0.07, G:0.20, T:0.37
Consensus pattern (23 bp):
TATGAACAGTGATTTTATCGATA
Found at i:86882 original size:47 final size:47
Alignment explanation
Indices: 86810--86928 Score: 204
Period size: 47 Copynumber: 2.6 Consensus size: 47
86800 ACACTATATC
* *
86810 GATACATGAATAG-TATGAACAGTGATTTTATCGATATATGAATAGT
1 GATACGTGAATAGTTATGAACAGTGATTTTATCGATATATGAATACT
86856 GATACGTGAATAGTTATGAACAGTGATTTTATCGATATATGAATACT
1 GATACGTGAATAGTTATGAACAGTGATTTTATCGATATATGAATACT
*
86903 GATACGTGAACAGTTATGAACAGTGA
1 GATACGTGAATAGTTATGAACAGTGA
86929 ACAGTGATGA
Statistics
Matches: 69, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
46 12 0.17
47 57 0.83
ACGTcount: A:0.38, C:0.08, G:0.21, T:0.33
Consensus pattern (47 bp):
GATACGTGAATAGTTATGAACAGTGATTTTATCGATATATGAATACT
Found at i:86930 original size:17 final size:17
Alignment explanation
Indices: 86908--86945 Score: 67
Period size: 17 Copynumber: 2.2 Consensus size: 17
86898 ATACTGATAC
*
86908 GTGAACAGTTATGAACA
1 GTGAACAGTGATGAACA
86925 GTGAACAGTGATGAACA
1 GTGAACAGTGATGAACA
86942 GTGA
1 GTGA
86946 TGTATCGATA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.39, C:0.11, G:0.29, T:0.21
Consensus pattern (17 bp):
GTGAACAGTGATGAACA
Found at i:89698 original size:1 final size:1
Alignment explanation
Indices: 89694--89775 Score: 56
Period size: 1 Copynumber: 82.0 Consensus size: 1
89684 ATTCTTTTTC
* * * * * * * * *
89694 AAAAAAAAAAACAAAAACAACAAAAAAAATAAAAAAACAAAAAAACAAAAAACAAAACAAAGAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * *
89759 AAAGAGAGAAAAAAAAA
1 AAAAAAAAAAAAAAAAA
89776 GAATTTGCTT
Statistics
Matches: 57, Mismatches: 24, Indels: 0
0.70 0.30 0.00
Matches are distributed among these distances:
1 57 1.00
ACGTcount: A:0.85, C:0.09, G:0.05, T:0.01
Consensus pattern (1 bp):
A
Found at i:89718 original size:8 final size:8
Alignment explanation
Indices: 89694--89761 Score: 77
Period size: 8 Copynumber: 8.4 Consensus size: 8
89684 ATTCTTTTTC
89694 AAAA-AAA
1 AAAACAAA
89701 AAAACAAA
1 AAAACAAA
89709 AACAACAAAA
1 AA-AAC-AAA
*
89719 AAAATAAA
1 AAAACAAA
89727 AAAACAAA
1 AAAACAAA
89735 AAAAC-AA
1 AAAACAAA
89742 AAAACAAA
1 AAAACAAA
*
89750 ACAAAGAAA
1 A-AAACAAA
89759 AAA
1 AAA
89762 GAGAGAAAAA
Statistics
Matches: 53, Mismatches: 3, Indels: 9
0.82 0.05 0.14
Matches are distributed among these distances:
7 11 0.21
8 25 0.47
9 12 0.23
10 5 0.09
ACGTcount: A:0.87, C:0.10, G:0.01, T:0.01
Consensus pattern (8 bp):
AAAACAAA
Found at i:89720 original size:20 final size:20
Alignment explanation
Indices: 89694--89761 Score: 86
Period size: 20 Copynumber: 3.4 Consensus size: 20
89684 ATTCTTTTTC
89694 AAAAAAAAAAACAAAAACAA
1 AAAAAAAAAAACAAAAACAA
*
89714 CAAAAAAAATAA-AAAAACAA
1 -AAAAAAAAAAACAAAAACAA
89734 AAAAACAAAAAAC-AAAACAA
1 AAAAA-AAAAAACAAAAACAA
*
89754 AGAAAAAA
1 AAAAAAAA
89762 GAGAGAAAAA
Statistics
Matches: 42, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
19 8 0.19
20 24 0.57
21 10 0.24
ACGTcount: A:0.87, C:0.10, G:0.01, T:0.01
Consensus pattern (20 bp):
AAAAAAAAAAACAAAAACAA
Found at i:89771 original size:41 final size:39
Alignment explanation
Indices: 89694--89775 Score: 96
Period size: 39 Copynumber: 2.1 Consensus size: 39
89684 ATTCTTTTTC
*
89694 AAAAAAAAAAACAAAAACAACAAAAAAAATAAAAAAACAA
1 AAAAAAAAAAACAAAAACAACAAAAAAAAGAAAAAAA-AA
* * *
89734 AAAAACAAAAAAC-AAAACAA-AGAAAAAAGAGAGAAAAA
1 AAAAA-AAAAAACAAAAACAACAAAAAAAAGAAAAAAAAA
89772 AAAA
1 AAAA
89776 GAATTTGCTT
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
38 6 0.16
39 12 0.32
40 12 0.32
41 7 0.19
ACGTcount: A:0.85, C:0.09, G:0.05, T:0.01
Consensus pattern (39 bp):
AAAAAAAAAAACAAAAACAACAAAAAAAAGAAAAAAAAA
Found at i:90842 original size:60 final size:59
Alignment explanation
Indices: 90748--90892 Score: 191
Period size: 60 Copynumber: 2.4 Consensus size: 59
90738 CCTTTCACTT
* * *
90748 TTCAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTAAAGCCCACACAAGCTGATGGCACC
1 TTCAGTCCTCAAAGAGCAGGACGCCTTCTCCTTTTAAAGCCCACACAAGCTGATGGCA-C
* * * * *
90808 TTCAGTCTTCAAAGAGCAAGACGCCTTCTCCTTTTAAAGCCCATACAAGTTGGTGGCAC
1 TTCAGTCCTCAAAGAGCAGGACGCCTTCTCCTTTTAAAGCCCACACAAGCTGATGGCAC
90867 TTCCTAGTCCTCAAAGAGCAGGACGC
1 TT-C-AGTCCTCAAAGAGCAGGACGC
90893 TCTCTTCTTT
Statistics
Matches: 73, Mismatches: 10, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
59 3 0.04
60 51 0.70
61 19 0.26
ACGTcount: A:0.27, C:0.28, G:0.19, T:0.26
Consensus pattern (59 bp):
TTCAGTCCTCAAAGAGCAGGACGCCTTCTCCTTTTAAAGCCCACACAAGCTGATGGCAC
Found at i:91117 original size:121 final size:122
Alignment explanation
Indices: 90937--91165 Score: 336
Period size: 122 Copynumber: 1.9 Consensus size: 122
90927 GATGCCTTTT
* * *
90937 AAAGCCCACACAAGCTGGTGGCACCTTCAGTCCTCAAAGAGTAGGACGCCTTCTCCTTTT-AAAG
1 AAAGCCCACACAAGCTGGTGGAACCTTCAGTCCTCAAAGAGCAGGACGCATTCTCCTTTTCAAAG
* *
91001 CCCACACAAGTTGATGGCACTTTTTAGTCCTCAAAAAGTAGGATGCTTTCTTTTTGC
66 CCCACACAAGTTGATGGCACTTTTCAGTCCTCAAAAAGCAGGATGCTTTCTTTTTGC
* * * *
91058 AAAGCCCACACAAGTTGGTGGAACCTTCCAGTCCTCAAAGGGCAGGATGCATT-TTCTTTTCAAA
1 AAAGCCCACACAAGCTGGTGGAACCTT-CAGTCCTCAAAGAGCAGGACGCATTCTCCTTTTCAAA
* *
91122 GCCCACACGAGTTGGTGGCACTTTTCAGTCCTCAAAAAGCAGGA
65 GCCCACACAAGTTGATGGCACTTTTCAGTCCTCAAAAAGCAGGA
91166 CGCATTTTAT
Statistics
Matches: 95, Mismatches: 11, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
121 31 0.33
122 64 0.67
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.26
Consensus pattern (122 bp):
AAAGCCCACACAAGCTGGTGGAACCTTCAGTCCTCAAAGAGCAGGACGCATTCTCCTTTTCAAAG
CCCACACAAGTTGATGGCACTTTTCAGTCCTCAAAAAGCAGGATGCTTTCTTTTTGC
Found at i:91171 original size:61 final size:61
Alignment explanation
Indices: 90932--91179 Score: 272
Period size: 61 Copynumber: 4.1 Consensus size: 61
90922 AGCAGGATGC
* * * * * *
90932 CTTTT-AAAGCCCACACAAGCTGGTGGCAC-CTTCAGTCCTCAAAGAGTAGGACGCCTTCTC
1 CTTTTCAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAAAGCAGGACGCATT-TT
* * * *
90992 CTTTT-AAAGCCCACACAAGTTGATGGCACTTTTTAGTCCTCAAAAAGTAGGATGC--TTT
1 CTTTTCAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAAAGCAGGACGCATTTT
* * * ** *
91050 CTTTTTGCAAAGCCCACACAAGTTGGTGGAACCTTCCAGTCCTCAAAGGGCAGGATGCATTTT
1 C-TTTT-CAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAAAGCAGGACGCATTTT
*
91113 CTTTTCAAAGCCCACACGAGTTGGTGGCACTTTTCAGTCCTCAAAAAGCAGGACGCATTTT
1 CTTTTCAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAAAGCAGGACGCATTTT
*
91174 ATTTTC
1 CTTTTC
91180 CTTTTTCTTT
Statistics
Matches: 159, Mismatches: 23, Indels: 11
0.82 0.12 0.06
Matches are distributed among these distances:
58 2 0.01
59 5 0.03
60 27 0.17
61 117 0.74
62 4 0.03
63 4 0.03
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.29
Consensus pattern (61 bp):
CTTTTCAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAAAGCAGGACGCATTTT
Found at i:91199 original size:42 final size:43
Alignment explanation
Indices: 91149--91252 Score: 120
Period size: 42 Copynumber: 2.4 Consensus size: 43
91139 GCACTTTTCA
* *
91149 GTCCTCAAAAAGCAGGACGCATTTTATTTTCC-TTTTTCTTTT
1 GTCCTCAAAAAGCAGGACGCATTTTATTTCCCTTTTTTCCTTT
* * * * *
91191 GTCCTCAAACAGTAAGACGTATTTTGTTTCCCTTTTTTCCTTT
1 GTCCTCAAAAAGCAGGACGCATTTTATTTCCCTTTTTTCCTTT
* *
91234 GTCCTCGAAAGGCAGGACG
1 GTCCTCAAAAAGCAGGACG
91253 TACTCTTTTT
Statistics
Matches: 49, Mismatches: 12, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
42 26 0.53
43 23 0.47
ACGTcount: A:0.21, C:0.23, G:0.16, T:0.39
Consensus pattern (43 bp):
GTCCTCAAAAAGCAGGACGCATTTTATTTCCCTTTTTTCCTTT
Found at i:91927 original size:13 final size:13
Alignment explanation
Indices: 91909--91938 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
91899 ATACATTGCT
*
91909 CATTATATTGATA
1 CATTATATCGATA
91922 CATTATATCGATA
1 CATTATATCGATA
91935 CATT
1 CATT
91939 CTGGGTTTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.37, C:0.13, G:0.07, T:0.43
Consensus pattern (13 bp):
CATTATATCGATA
Found at i:91980 original size:20 final size:19
Alignment explanation
Indices: 91955--92061 Score: 100
Period size: 20 Copynumber: 5.7 Consensus size: 19
91945 TTACCTAGAC
*
91955 GTATCGATACATTTTGCATT
1 GTATCGATACATTCT-CATT
91975 GTATCGATACATTACTCATT
1 GTATCGATACATT-CTCATT
91995 GTATCGAT--A----CATT
1 GTATCGATACATTCTCATT
*
92008 GTATTGATACATTGCTCATT
1 GTATCGATACATT-CTCATT
* *
92028 GTATCGATACATTTTACAAT
1 GTATCGATACATTCT-CATT
92048 GTATCGATACATTC
1 GTATCGATACATTC
92062 AGGAATTTTT
Statistics
Matches: 72, Mismatches: 6, Indels: 18
0.75 0.06 0.19
Matches are distributed among these distances:
13 11 0.15
15 1 0.01
18 1 0.01
19 1 0.01
20 57 0.79
21 1 0.01
ACGTcount: A:0.29, C:0.17, G:0.13, T:0.41
Consensus pattern (19 bp):
GTATCGATACATTCTCATT
Found at i:92017 original size:33 final size:33
Alignment explanation
Indices: 91971--92040 Score: 122
Period size: 33 Copynumber: 2.1 Consensus size: 33
91961 ATACATTTTG
91971 CATTGTATCGATACATTACTCATTGTATCGATA
1 CATTGTATCGATACATTACTCATTGTATCGATA
* *
92004 CATTGTATTGATACATTGCTCATTGTATCGATA
1 CATTGTATCGATACATTACTCATTGTATCGATA
92037 CATT
1 CATT
92041 TTACAATGTA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.29, C:0.17, G:0.13, T:0.41
Consensus pattern (33 bp):
CATTGTATCGATACATTACTCATTGTATCGATA
Found at i:92040 original size:13 final size:13
Alignment explanation
Indices: 91991--92021 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
91981 ATACATTACT
91991 CATTGTATCGATA
1 CATTGTATCGATA
*
92004 CATTGTATTGATA
1 CATTGTATCGATA
92017 CATTG
1 CATTG
92022 CTCATTGTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.29, C:0.13, G:0.16, T:0.42
Consensus pattern (13 bp):
CATTGTATCGATA
Found at i:94411 original size:51 final size:51
Alignment explanation
Indices: 94350--94514 Score: 199
Period size: 51 Copynumber: 3.2 Consensus size: 51
94340 TTCATCTCGA
* * * * *
94350 GGATACTCCAA-TCCCGGTTTGATTTCCAAAACATCAATTTTTCTTAATCGG
1 GGATACTCCAACT-CCGATTTTATTTCCAAAACACCAATTTTCCATAATCGG
* *
94401 GGATACTCCAACTCCGATTTTATTTCTAAAACACCCATTTTCCATAATCGG
1 GGATACTCCAACTCCGATTTTATTTCCAAAACACCAATTTTCCATAATCGG
* * * *
94452 GGATACTCCAACTCCGATTTTATTTCCAAAACACCGACTTTT-CACAATTGC
1 GGATACTCCAACTCCGATTTTATTTCCAAAACACC-AATTTTCCATAATCGG
94503 GGATACTCCAAC
1 GGATACTCCAAC
94515 CTCGTTATTT
Statistics
Matches: 99, Mismatches: 13, Indels: 4
0.85 0.11 0.03
Matches are distributed among these distances:
51 94 0.95
52 5 0.05
ACGTcount: A:0.29, C:0.27, G:0.12, T:0.32
Consensus pattern (51 bp):
GGATACTCCAACTCCGATTTTATTTCCAAAACACCAATTTTCCATAATCGG
Found at i:94615 original size:76 final size:76
Alignment explanation
Indices: 94450--94728 Score: 315
Period size: 76 Copynumber: 3.6 Consensus size: 76
94440 TTCCATAATC
* * * * * *
94450 GGGGATACTCCAACTCCGATTTTATTTCCAAAACACCGACTTTTCACAATTGCGGATACTCCAAC
1 GGGGATACTCCAACCCCGATTTTATTTCTAAAACACC-AATTTT-TC-ATCGGGGATACTCCAAC
*
94515 CTCGTTATTTTTGA
63 CTCGTTATTTTCGA
* * * * *
94529 GGGAACACTCCAACCCCGGTTTTATTTCTAAAACATCAATTTTTCATCGGGGATACTCCAACCCC
1 GGGGATACTCCAACCCCGATTTTATTTCTAAAACACCAATTTTTCATCGGGGATACTCCAACCTC
94594 GTTATTTTCGA
66 GTTATTTTCGA
** * *
94605 GGGGATACTCCAACCCCGATTTTATTTCTAAAACATAAAATTTTCATCGGGGATACACCAACCTC
1 GGGGATACTCCAACCCCGATTTTATTTCTAAAACACCAATTTTTCATCGGGGATACTCCAACCTC
*
94670 GTTATTTCCGA
66 GTTATTTTCGA
* * ** * *
94681 GGGGATACTCCAGCACCGGCTTTATATCTAAAAACACCCATTTTTCAT
1 GGGGATACTCCAACCCCGATTTTATTTCT-AAAACACCAATTTTTCAT
94729 AATTTGGGGT
Statistics
Matches: 170, Mismatches: 29, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
76 119 0.70
77 15 0.09
78 5 0.03
79 31 0.18
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.31
Consensus pattern (76 bp):
GGGGATACTCCAACCCCGATTTTATTTCTAAAACACCAATTTTTCATCGGGGATACTCCAACCTC
GTTATTTTCGA
Found at i:94876 original size:108 final size:107
Alignment explanation
Indices: 94646--94883 Score: 277
Period size: 108 Copynumber: 2.2 Consensus size: 107
94636 AACATAAAAT
* *
94646 TTTCATCGGGGATACACCAACCTCGTTATTTCCGAGGGGATACTCCAGCACCGGCTTTATATCTA
1 TTTCATCGGGGATACTCCAACCTCGTTATTTCCGAGGGGATACTCCA-CACCGGATTTATATCTA
* * * *
94711 AAAACACCCATTTTTCATAATTTGGGGTACTCCAACCCCATTA
65 AAAACACCAATTTCTCACAATTCGGGGTACTCCAACCCCATTA
* * * *
94754 TTTCATCGGAGATACTCTAATCC-CGTTATTTCCGAGGGGATACTCCA-ACCGTGATTTTTATTT
1 TTTCATCGGGGATACTCCAA-CCTCGTTATTTCCGAGGGGATACTCCACACCG-GATTTATATCT
* *
94817 CCAAAACACCAATTTCTCGCAA-TCGGGGATACTCCAACCCCATTA
64 -AAAAACACCAATTTCTCACAATTCGGGG-TACTCCAACCCCATTA
*
94862 TTT-TTGCGGGGATACTCCAACC
1 TTTCAT-CGGGGATACTCCAACC
94884 CCGATTTTAG
Statistics
Matches: 110, Mismatches: 15, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
106 4 0.04
107 16 0.15
108 88 0.80
109 2 0.02
ACGTcount: A:0.26, C:0.28, G:0.16, T:0.30
Consensus pattern (107 bp):
TTTCATCGGGGATACTCCAACCTCGTTATTTCCGAGGGGATACTCCACACCGGATTTATATCTAA
AAACACCAATTTCTCACAATTCGGGGTACTCCAACCCCATTA
Found at i:94944 original size:79 final size:79
Alignment explanation
Indices: 94758--95019 Score: 262
Period size: 80 Copynumber: 3.3 Consensus size: 79
94748 CCATTATTTC
* * * * *** *
94758 ATCGGAGATACTCTAATCCCGTTATTTCCGAGGGGATACTCCAACCGTGATTTTTATTTCCAAAA
1 ATCGG-GATACTCCAACCCCATTATTTTCGAGGGGATACTCCAACCCCAATTTTTATTTCTAAAA
*
94823 CACCAATTTCTCGC--A
65 CACCGATTT-TC-CATA
* * *
94838 ATCGGGGATACTCCAACCCCATTATTTTTGCGGGGATACTCCAACCCCGA-TTTTAGTTT-TAAA
1 ATC-GGGATACTCCAACCCCATTATTTTCGAGGGGATACTCCAACCCCAATTTTTA-TTTCTAAA
* *
94901 ATACCGATTTTCTATA
64 ACACCGATTTTCCATA
** *
94917 ATCAGGGATACTCCAACCCTGTTATTTTCGAGGGGATACTCCAACCCCAATTTTTATTTCTAGAA
1 ATC-GGGATACTCCAACCCCATTATTTTCGAGGGGATACTCCAACCCCAATTTTTATTTCTAAAA
94982 CACCGATTTTCCATA
65 CACCGATTTTCCATA
* *
94997 ATCGTGGATACTCTAGCCCCATT
1 ATCG-GGATACTCCAACCCCATT
95020 GTTATCTCCA
Statistics
Matches: 150, Mismatches: 25, Indels: 14
0.79 0.13 0.07
Matches are distributed among these distances:
78 2 0.01
79 65 0.43
80 81 0.54
81 2 0.01
ACGTcount: A:0.27, C:0.26, G:0.15, T:0.32
Consensus pattern (79 bp):
ATCGGGATACTCCAACCCCATTATTTTCGAGGGGATACTCCAACCCCAATTTTTATTTCTAAAAC
ACCGATTTTCCATA
Found at i:96849 original size:156 final size:155
Alignment explanation
Indices: 96361--97022 Score: 678
Period size: 155 Copynumber: 4.3 Consensus size: 155
96351 TAAGTTCAAG
** * **
96361 AAAAATTATGAAAATGCCCCTAT-GGGATACCTTCGATGTAAAAGCACCTGATAC--CCCTAAAG
1 AAAAATTATGAAAATGCCCCTATGGGGATACCTTCGACATAAAAGTACCCCA-ACAACCCTAAAG
* * * *
96423 GACCTAAAAAGGA-TAGAAATGGGATGAACCTATCCTAAATACCCACCTTAGGCATAAAAGCGAA
65 GACCTAAAAA-GACTAGAAAAGGGATGAACCTATCCTAAATACCCACCTTCGACATAAAAGCGGA
* * * * *
96487 CCCAGTGACGACATAGGAGTTGGTTCT
129 CCCGGTGACAACATAGGACTCGATTCT
** * * *
96514 AAAACATTACAAAAATGCTCCTA-GGGGATACCTTC-ACATAAAAGTA-CCCAATACCCCTAAAG
1 AAAA-ATTATGAAAATGCCCCTATGGGGATACCTTCGACATAAAAGTACCCCAACAACCCTAAAG
* * * * * **
96576 GACTTAAAAAGAATGGAAATGGTGATGAACCTATCCTAAATGCAAACCTTCGACATAAAAGCGGA
65 GACCTAAAAAGACTAGAAAAGG-GATGAACCTATCCTAAATACCCACCTTCGACATAAAAGCGGA
*
96641 CTCGGT-ACAACATAGGACTCGATTCT
129 CCCGGTGACAACATAGGACTCGATTCT
* * *
96667 AAGAAATTATAAAAATGCCCCTATGGGTATACCTTCGACGTAAAAGTACCCCAACAACCCTAAAG
1 AA-AAATTATGAAAATGCCCCTATGGGGATACCTTCGACATAAAAGTACCCCAACAACCCTAAAG
* *
96732 GACCTAAAAAGACTAGAAAAGGGATGAACCTATCCTAAATGCCCACCTTCGACATACAAGCGGAC
65 GACCTAAAAAGACTAGAAAAGGGATGAACCTATCCTAAATACCCACCTTCGACATAAAAGCGGAC
* * * * *
96797 CCGGTGACGACTTAGGAGTCAATTTT
130 CCGGTGACAACATAGGACTCGATTCT
** * * ***
96823 AAGAAATTATGAAAATGCCCAAATGGGTATACCTTCAACATAAAAGTACCCTGGCAACCCTAAAG
1 AA-AAATTATGAAAATGCCCCTATGGGGATACCTTCGACATAAAAGTACCCCAACAACCCTAAAG
* * * *** * *
96888 GACTTAAAAAGACTATAAAAGAG-TGAACCTATCCTAAATACCCGTATTCGGCATAAAAGTGGAC
65 GACCTAAAAAGACTAGAAAAGGGATGAACCTATCCTAAATACCCACCTTCGACATAAAAGCGGAC
* * *
96952 CCGGTGATAACCTAGGACTCGATTTT
130 CCGGTGACAACATAGGACTCGATTCT
*
96978 GAAAAATTATGAAAATACCCCTA-GGGGATACCTTCGACATGAAAA
1 -AAAAATTATGAAAATGCCCCTATGGGGATACCTTCGACAT-AAAA
97023 TGCTCAGAGA
Statistics
Matches: 426, Mismatches: 70, Indels: 24
0.82 0.13 0.05
Matches are distributed among these distances:
151 1 0.00
152 4 0.01
153 71 0.17
154 94 0.22
155 130 0.31
156 126 0.30
ACGTcount: A:0.39, C:0.22, G:0.18, T:0.21
Consensus pattern (155 bp):
AAAAATTATGAAAATGCCCCTATGGGGATACCTTCGACATAAAAGTACCCCAACAACCCTAAAGG
ACCTAAAAAGACTAGAAAAGGGATGAACCTATCCTAAATACCCACCTTCGACATAAAAGCGGACC
CGGTGACAACATAGGACTCGATTCT
Found at i:97855 original size:128 final size:128
Alignment explanation
Indices: 97531--97857 Score: 460
Period size: 128 Copynumber: 2.5 Consensus size: 128
97521 ATACAAAAAA
* * **
97531 TTGAAATCTTTTAATACCCCTACGGATATCCATAGGAATATAAAAGATTAAAAACGATTAATATT
1 TTGAAATCTTTT-ATACCCCTACGGATACCCATAAGAATATAAAAGATTAAAAATAATTAATATT
* * *
97596 TATTTATTTTTGGAAAAAAATCATTTTGTACCTTAATGGATACTCGAAAAGATATGAAAAGTTT
65 TATTTATTTTTGGAAAAAAATCATTTCGTACCTTAATGGATACCCAAAAAGATATGAAAAGTTT
* * * *
97660 TTGAAATCTTTTATACCTCTACGGATACCCATAAGAATATAAAAGACTTGAAAATAAATGATATT
1 TTGAAATCTTTTATACCCCTACGGATACCCATAAGAATATAAAAGA-TTAAAAATAATTAATATT
*
97725 TATTTGTGTTTT-G-AAAAAATCATTTCGTACCTTAATGGATACCCAAAAAGATATGAAAAGTTT
65 TATTTAT-TTTTGGAAAAAAATCATTTCGTACCTTAATGGATACCCAAAAAGATATGAAAAGTTT
* * * *
97788 TTGAAATCTTTTATACCCCTACGGATACCCGTAAGAATATAAATGATTAAAAAATTATTAATGTT
1 TTGAAATCTTTTATACCCCTACGGATACCCATAAGAATATAAAAGATT-AAAAATAATTAATATT
97853 TATTT
65 TATTT
97858 TAAATAACAA
Statistics
Matches: 175, Mismatches: 20, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
127 2 0.01
128 137 0.78
129 32 0.18
130 4 0.02
ACGTcount: A:0.40, C:0.12, G:0.12, T:0.36
Consensus pattern (128 bp):
TTGAAATCTTTTATACCCCTACGGATACCCATAAGAATATAAAAGATTAAAAATAATTAATATTT
ATTTATTTTTGGAAAAAAATCATTTCGTACCTTAATGGATACCCAAAAAGATATGAAAAGTTT
Found at i:99304 original size:16 final size:17
Alignment explanation
Indices: 99285--99316 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
99275 AAAAAACCGT
99285 ATTTCAAA-AAAAAAAA
1 ATTTCAAATAAAAAAAA
99301 ATTTCAAATAAAAAAA
1 ATTTCAAATAAAAAAA
99317 CCAAAACTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.72, C:0.06, G:0.00, T:0.22
Consensus pattern (17 bp):
ATTTCAAATAAAAAAAA
Found at i:99554 original size:170 final size:165
Alignment explanation
Indices: 99243--99768 Score: 646
Period size: 170 Copynumber: 3.2 Consensus size: 165
99233 AAATAGACTG
* * *
99243 AGAAAAATCCCCTCG-AAAAATTTACAGAGTAGAAAAAACCGTATTTC-AAAAAAAAAAAATTTC
1 AGAAAAATCCCCTTGAAAAAATTTACGGAGTAGAAAACACCGTATTTCGAAAAAAAAAAAATTTC
** * * * * *
99306 AAATAAAAAAACCAAAACTCATGAAAATGAATTATTTTTTAAAAATAAATTCATATGAAATAACT
66 AAGGAAAAAATCCAAAACTCATGAAAATGAATTGTTTTTTAAAATTGAATTCATATGAAATAAAT
99371 AATGATATTTGATGAATTTTAAAAATTAAAAACCA
131 AATGATATTTGATGAATTTTAAAAATTAAAAACCA
* *
99406 AGAAAAATCCCCTTGAAAAAATTTTATGGAGTAGAAAACATCGTATTTCGAAAAAAAAAAGGGAA
1 AGAAAAATCCCCTTGAAAAAA-TTTACGGAGTAGAAAACACCGTATTTCGAAAAAAAAAA---AA
*
99471 TTTCAAGGAAAAAATCCAAAACTTATGAAAATGAATTTGTTTTTTAAAATTGAATTCATATGAAA
62 TTTCAAGGAAAAAATCCAAAACTCATGAAAATGAA-TTGTTTTTTAAAATTGAATTCATATGAAA
*
99536 TAAATAATGATGTTTGATGAATTTTAAAAATTAAAAACCA
126 TAAATAATGATATTTGATGAATTTTAAAAATTAAAAACCA
* * * ** * *
99576 AGAAAAATCCCCTTGAAAAAATTTGCGAAGTAAAAAACACCGTATTTCGGGAAAAGAACAATTTC
1 AGAAAAATCCCCTTGAAAAAATTTACGGAGTAGAAAACACCGTATTTCGAAAAAAAAAAAATTTC
* * *
99641 AAGGAAACAAATTCAAAAACTCATGAAAATG-ATTGAATTTTTAAAAATTGAATTAATATGAAAT
66 AAGGAAA-AAA-TCCAAAACTCATGAAAATGAATTG--TTTTTTAAAATTGAATTCATATGAAAT
** * * * **
99705 AAATGGTAATATTTTATGAATTTTTAAAATTAAAAATAA
127 AAATAATGATATTTGATGAATTTTAAAAATTAAAAACCA
* *
99744 AGAAAAATCCTC-TCAAAAAATTTAC
1 AGAAAAATCCCCTTGAAAAAATTTAC
99769 AGATAAGAAA
Statistics
Matches: 314, Mismatches: 38, Indels: 18
0.85 0.10 0.05
Matches are distributed among these distances:
163 14 0.04
164 5 0.02
165 23 0.07
166 26 0.08
167 15 0.05
168 84 0.27
169 62 0.20
170 85 0.27
ACGTcount: A:0.51, C:0.10, G:0.10, T:0.29
Consensus pattern (165 bp):
AGAAAAATCCCCTTGAAAAAATTTACGGAGTAGAAAACACCGTATTTCGAAAAAAAAAAAATTTC
AAGGAAAAAATCCAAAACTCATGAAAATGAATTGTTTTTTAAAATTGAATTCATATGAAATAAAT
AATGATATTTGATGAATTTTAAAAATTAAAAACCA
Found at i:99738 original size:168 final size:166
Alignment explanation
Indices: 99243--99768 Score: 629
Period size: 168 Copynumber: 3.2 Consensus size: 166
99233 AAATAGACTG
*
99243 AGAAAAATCCCCTCG-AAAAATTTAC-AGAGTAGAAAAA-ACCGTATTTC-AAAAAAAAAAAATT
1 AGAAAAATCCCCTTGAAAAAATTTACGA-AGTA-AAAAACACCGTATTTCGAAAAAAAAAAAATT
** * *
99304 TCAAATAAAAAAACCAAAACTCATGAAAATGAATT-ATTTTTTAAAAA-TAAATTCATATGAAAT
64 TCAAGGAAAAAATCCAAAACTCATGAAAATGAATTGA-TTTTTAAAAATTGAATTCATATGAAAT
*
99367 AACTAATGATATTTGATGAATTTTAAAAATTAAAAACCA
128 AAATAATGATATTTGATGAATTTTAAAAATTAAAAACCA
* * * *
99406 AGAAAAATCCCCTTGAAAAAATTTTATGGAGTAGAAAACATCGTATTTCGAAAAAAAAAAGGGAA
1 AGAAAAATCCCCTTGAAAAAA-TTTACGAAGTAAAAAACACCGTATTTCGAAAAAAAAAA---AA
* *
99471 TTTCAAGGAAAAAATCCAAAACTTATGAAAATGAATTTG-TTTTTTAAAATTGAATTCATATGAA
62 TTTCAAGGAAAAAATCCAAAACTCATGAAAATGAA-TTGATTTTTAAAAATTGAATTCATATGAA
*
99535 ATAAATAATGATGTTTGATGAATTTTAAAAATTAAAAACCA
126 ATAAATAATGATATTTGATGAATTTTAAAAATTAAAAACCA
* ** * *
99576 AGAAAAATCCCCTTGAAAAAATTTGCGAAGTAAAAAACACCGTATTTCGGGAAAAGAACAATTTC
1 AGAAAAATCCCCTTGAAAAAATTTACGAAGTAAAAAACACCGTATTTCGAAAAAAAAAAAATTTC
* *
99641 AAGGAAACAAATTCAAAAACTCATGAAAATG-ATTGAATTTTTAAAAATTGAATTAATATGAAAT
66 AAGGAAA-AAA-TCCAAAACTCATGAAAATGAATTG-ATTTTTAAAAATTGAATTCATATGAAAT
** * * * **
99705 AAATGGTAATATTTTATGAATTTTTAAAATTAAAAATAA
128 AAATAATGATATTTGATGAATTTTAAAAATTAAAAACCA
* *
99744 AGAAAAATCCTC-TCAAAAAATTTAC
1 AGAAAAATCCCCTTGAAAAAATTTAC
99769 AGATAAGAAA
Statistics
Matches: 311, Mismatches: 37, Indels: 26
0.83 0.10 0.07
Matches are distributed among these distances:
163 14 0.05
164 9 0.03
165 17 0.05
166 26 0.08
167 15 0.05
168 84 0.27
169 71 0.23
170 75 0.24
ACGTcount: A:0.51, C:0.10, G:0.10, T:0.29
Consensus pattern (166 bp):
AGAAAAATCCCCTTGAAAAAATTTACGAAGTAAAAAACACCGTATTTCGAAAAAAAAAAAATTTC
AAGGAAAAAATCCAAAACTCATGAAAATGAATTGATTTTTAAAAATTGAATTCATATGAAATAAA
TAATGATATTTGATGAATTTTAAAAATTAAAAACCA
Found at i:101610 original size:168 final size:167
Alignment explanation
Indices: 101191--101617 Score: 455
Period size: 167 Copynumber: 2.6 Consensus size: 167
101181 TAAAAATAAG
* ** * * * * * * * *
101191 GGATAAAGAAGTTGACTGGGATTGTACCTATAAGTCAATAAAATATAGAAGGAAGTACTTGTGAC
1 GGATAAAAAAGTTGACCAGGATTGGACCAACAAGTCAACAAAAGATAAAAGAAAGTACTTGCGAC
* * *
101256 CAAGCTGACAGGTGAATGAAGGATAAAAAGTTAACCAGGATTAAACCAACAAGTCAACGGGGGAT
66 CAAGCAGACAGGTGAATGAAGGATAAAAAGTTAACCAAGATTAAACCAACAAGTCAACGAGGGAT
* * *
101321 AAAGGATTTACCCGAGATTGGGCTACAGGTAAACAAA
131 AAAGGATTTACCAGAGACTGGGCGACAGGTAAACAAA
* * *
101358 GGATAAAAAAGTTGACCATGATTGGACCAACAAGTCAATAAAAGATAAAAGAAAGTACTTGCAAC
1 GGATAAAAAAGTTGACCAGGATTGGACCAACAAGTCAACAAAAGATAAAAGAAAGTACTTGCGAC
* * * * * * * *
101423 CAAGGAAACAGGGGAATGAAGGATAAAAAGTTGACTAAGATTAAACCGACAAGTTAATGAGGGAT
66 CAAGCAGACAGGTGAATGAAGGATAAAAAGTTAACCAAGATTAAACCAACAAGTCAACGAGGGAT
* **
101488 AAAGGATTTACTTAG-GACTGGGCCGATGGGTAAACAACA
131 AAAGGATTTAC-CAGAGACTGGG-CGACAGGTAAACAA-A
* *** *
101527 -GATAAAAAATTTGATTGGGATTGGACCAACAAGTCAACAAAAGATTAAAA-AAAGTACTTGGGA
1 GGATAAAAAAGTTGACCAGGATTGGACCAACAAGTCAACAAAAGA-TAAAAGAAAGTACTTGCGA
* *
101590 CCATGCCGACAGGTGAATGAAGGATAAA
65 CCAAGCAGACAGGTGAATGAAGGATAAA
101618 GGTTGATCAG
Statistics
Matches: 214, Mismatches: 42, Indels: 7
0.81 0.16 0.03
Matches are distributed among these distances:
167 124 0.58
168 84 0.39
169 6 0.03
ACGTcount: A:0.44, C:0.13, G:0.24, T:0.19
Consensus pattern (167 bp):
GGATAAAAAAGTTGACCAGGATTGGACCAACAAGTCAACAAAAGATAAAAGAAAGTACTTGCGAC
CAAGCAGACAGGTGAATGAAGGATAAAAAGTTAACCAAGATTAAACCAACAAGTCAACGAGGGAT
AAAGGATTTACCAGAGACTGGGCGACAGGTAAACAAA
Found at i:101690 original size:168 final size:168
Alignment explanation
Indices: 101192--101692 Score: 363
Period size: 167 Copynumber: 3.0 Consensus size: 168
101182 AAAAATAAGG
* * * * * * * * * * **
101192 GATAAAGAAGTTGACTGGGATTGTACCTATAAGTCAATAAAATATAGAAGGAAGTACTTGTGACC
1 GATAAAAAATTTGATTGGGATTGGACCAACAAGTCAACAAAAGATAAAAGAAAGTACTTGCAACC
** * * * * * * ****
101257 AAGCTGACAGGTGAATGAAGGATAAAAAGTTAACCAGGATTAAACCAACAAGTCAACGGGGGATA
66 AAGCAAACAGGGGAATGAAGGATAAAAAGTTGACTAAGACTAAACCGACAAGTCAATAAAGGATA
** ** * * *
101322 AAGGATTTAC-CCGAGA-TTGGGCTACAGGTAAACAA-A
131 AAGGATTTACTTAG-GACTAAGCCGATAGGTAAACAACA
* **** *
101358 GGATAAAAAAGTTGACCATGATTGGACCAACAAGTCAATAAAAGATAAAAGAAAGTACTTGCAAC
1 -GATAAAAAATTTGATTGGGATTGGACCAACAAGTCAACAAAAGATAAAAGAAAGTACTTGCAAC
* * * * *
101423 CAAGGAAACAGGGGAATGAAGGATAAAAAGTTGACTAAGATTAAACCGACAAGTTAATGAGGGAT
65 CAAGCAAACAGGGGAATGAAGGATAAAAAGTTGACTAAGACTAAACCGACAAGTCAATAAAGGAT
** *
101488 AAAGGATTTACTTAGGACTGGGCCGATGGGTAAACAACA
130 AAAGGATTTACTTAGGACTAAGCCGATAGGTAAACAACA
**
101527 GATAAAAAATTTGATTGGGATTGGACCAACAAGTCAACAAAAGATTAAAA-AAAGTACTTGGGAC
1 GATAAAAAATTTGATTGGGATTGGACCAACAAGTCAACAAAAGA-TAAAAGAAAGTACTTGCAAC
* ** * * * *
101591 CATGCCGACAGGTGAATGAAGGAT-AAAGGTTGA-TCAGAGACTAAGCTGACAAGTCACCATAAA
65 CAAGCAAACAGGGGAATGAAGGATAAAAAGTTGACT-A-AGACTAAACCGACAAGTCA--ATAAA
* *
101654 GG-TAAAGG-TTTA-TTGGGGACTAAGTCGATAGGTAAACAA
126 GGATAAAGGATTTACTT-AGGACTAAGCCGATAGGTAAACAA
101693 TGGATGAAGG
Statistics
Matches: 270, Mismatches: 55, Indels: 17
0.79 0.16 0.05
Matches are distributed among these distances:
166 1 0.00
167 130 0.48
168 122 0.45
169 12 0.04
170 5 0.02
ACGTcount: A:0.43, C:0.13, G:0.25, T:0.20
Consensus pattern (168 bp):
GATAAAAAATTTGATTGGGATTGGACCAACAAGTCAACAAAAGATAAAAGAAAGTACTTGCAACC
AAGCAAACAGGGGAATGAAGGATAAAAAGTTGACTAAGACTAAACCGACAAGTCAATAAAGGATA
AAGGATTTACTTAGGACTAAGCCGATAGGTAAACAACA
Found at i:101769 original size:43 final size:41
Alignment explanation
Indices: 101716--101858 Score: 124
Period size: 42 Copynumber: 3.3 Consensus size: 41
101706 TTTCCTACGA
*
101716 CTAAGGCGATGGGCAAATAAAGAGATGAAGAAGTCTCCCGGGT
1 CTAA-GCGATGGGCAAATAAAG-GATGAAGAAGTCTCCCAGGT
* * * * *
101759 CTAAGCCGATGGGTAGATGATGGATGAAGAAGTCTCTCAGGT
1 CTAAG-CGATGGGCAAATAAAGGATGAAGAAGTCTCCCAGGT
* ****
101801 CTAAGCGAATGGGCAGACGGTGGATGAAGAAGTCTCCCAAGGT
1 CTAAGCG-ATGGGCAAATAAAGGATGAAGAAGTCTCCC-AGGT
*
101844 CTAAGTCGACGGGCA
1 CTAAG-CGATGGGCA
101859 GAGGATTAGT
Statistics
Matches: 85, Mismatches: 11, Indels: 8
0.82 0.11 0.08
Matches are distributed among these distances:
41 2 0.02
42 50 0.59
43 31 0.36
44 2 0.02
ACGTcount: A:0.31, C:0.17, G:0.34, T:0.18
Consensus pattern (41 bp):
CTAAGCGATGGGCAAATAAAGGATGAAGAAGTCTCCCAGGT
Found at i:101792 original size:42 final size:42
Alignment explanation
Indices: 101739--102868 Score: 412
Period size: 42 Copynumber: 26.6 Consensus size: 42
101729 CAAATAAAGA
* * *
101739 GATGAAGAAGTCTCCCGGGTCTAAGCCGATGGGTAGATGATG
1 GATGAAGAAGTCTCTCGGGTCTAAGCCGATGGGCAGATGATT
* * * *
101781 GATGAAGAAGTCTCTCAGGTCTAAG-CGAATGGGCAGACGGTG
1 GATGAAGAAGTCTCTCGGGTCTAAGCCG-ATGGGCAGATGATT
* * * * *
101823 GATGAAGAAGTCTCCCAAGGTCTAAGTCGACGGGCAGAGGATT
1 GATGAAGAAGTCTCTC-GGGTCTAAGCCGATGGGCAGATGATT
* * * * ** * * ** *
101866 -AGTAAAAGAAGTCTCTCAGGACTGAGCAAACGGGTAGAAAATG
1 GA-T-GAAGAAGTCTCTCGGGTCTAAGCCGATGGGCAGATGATT
* * * *
101909 GATGAAG-AGCTCTCTCAGGTTTAAGTCGACT-GGCAGACGATT
1 GATGAAGAAG-TCTCTCGGGTCTAAGCCGA-TGGGCAGATGATT
* * *
101951 GATAAAGAAAGTCTCTCGGGAT-TGAA-CCGATAGGCAGACGATT
1 GATGAAG-AAGTCTCTCGGG-TCT-AAGCCGATGGGCAGATGATT
* * * * * * *
101994 GATGAAAAAAATCTCTCGAGTCTAAGTCGATAGGTAGACGATT
1 GATG-AAGAAGTCTCTCGGGTCTAAGCCGATGGGCAGATGATT
* *
102037 GACT-AAGGAAGTCTC-CTAGGTCTAAGCCGATAGGG-AAATGATT
1 GA-TGAA-GAAGTCTCTC-GGGTCTAAGCCGAT-GGGCAGATGATT
* * * * * * *
102080 GATAAAGGAAGTCTCCCGAGTTTGAGACGACGGGCAGATGATT
1 GATGAA-GAAGTCTCTCGGGTCTAAGCCGATGGGCAGATGATT
** * * *
102123 GACAAAGGAAGTCTC-CTAGGTCTAAGTCGATGGGTAGATGATT
1 GATGAA-GAAGTCTCTC-GGGTCTAAGCCGATGGGCAGATGATT
* * * ** *
102166 GTTGAAAAAGTCTAC-CGGGTCTAAGTCGATGGGCAGACAAAT
1 GATGAAGAAGTCT-CTCGGGTCTAAGCCGATGGGCAGATGATT
* * * * * *
102208 AATGGAA-AAGTCTTTCGAGTCTAAGCTGATCGGCAGAGGATT
1 GAT-GAAGAAGTCTCTCGGGTCTAAGCCGATGGGCAGATGATT
** * * * * * **
102250 GACAAAAGAAGTCTCTTGGGTCTAAGCCAACGAGCAAACAATT
1 GA-TGAAGAAGTCTCTCGGGTCTAAGCCGATGGGCAGATGATT
* * * * * * * *
102293 GATAAAGGAAGTCTATTGGGTCTAAGCTGACGAGTAGACGATT
1 GATGAA-GAAGTCTCTCGGGTCTAAGCCGATGGGCAGATGATT
** * **
102336 GACAAAAGAAGTCTCTC-GGTCTAAGCTGACAGGCAGATGATT
1 GA-TGAAGAAGTCTCTCGGGTCTAAGCCGATGGGCAGATGATT
* * ** * *
102378 GATAAAGGAAGTCTCCCAAGTCTAAGCCGAAGGGTAGATGATT
1 GATGAA-GAAGTCTCTCGGGTCTAAGCCGATGGGCAGATGATT
* ***
102421 GATGGAA-AAGTCTCCCGGGTCTAAGTTAATGGGCAGATGATT
1 GAT-GAAGAAGTCTCTCGGGTCTAAGCCGATGGGCAGATGATT
* * ** *
102463 GATGCAA-AAGTCTTTCGAGTCTAAGCCGACAGGCAGATGAAT
1 GATG-AAGAAGTCTCTCGGGTCTAAGCCGATGGGCAGATGATT
* * * * * * *
102505 GATGGAA-AACTCTCCCAGGTCTAAACCAATGGGAAGACGATT
1 GAT-GAAGAAGTCTCTCGGGTCTAAGCCGATGGGCAGATGATT
* * * * *
102547 GATGGAA-AAGTCTCTCAGGTCAAAGTCGACGGGCAGACGATT
1 GAT-GAAGAAGTCTCTCGGGTCTAAGCCGATGGGCAGATGATT
* * * * * * * **
102589 GATGAATAAGTCTCTCGGGTTTAAGCTGACGAGTAGATAAAA
1 GATGAAGAAGTCTCTCGGGTCTAAGCCGATGGGCAGATGATT
* * * * * * * **
102631 AATGAAGAAGTCTCCCGGGTCTGAGTCGACGAGCAAACAATT
1 GATGAAGAAGTCTCTCGGGTCTAAGCCGATGGGCAGATGATT
* * * * *
102673 GATGGAA-AAGTCTCCCGGGTCTGAGCTGATAGGCAGAAGATT
1 GAT-GAAGAAGTCTCTCGGGTCTAAGCCGATGGGCAGATGATT
** * * * *
102715 GACAAAGGAAGTCTCTAGGGTATAAGCTGATGGGCAGACGATT
1 GATGAA-GAAGTCTCTCGGGTCTAAGCCGATGGGCAGATGATT
* * * * * * ***
102758 GATAAAAAAAGTCTCTCAGGTTTGAGCCAACAAGCAGATGATT
1 GAT-GAAGAAGTCTCTCGGGTCTAAGCCGATGGGCAGATGATT
** * * *
102801 GACAAATGAAGTCTCCCGGGTCTAAGTCGATGGGTAG-TGATT
1 GATGAA-GAAGTCTCTCGGGTCTAAGCCGATGGGCAGATGATT
* *
102843 GGTGGAA-AAGTCTC-CAGGTCTAAGCC
1 GAT-GAAGAAGTCTCTCGGGTCTAAGCC
102869 AATAGGCAAA
Statistics
Matches: 820, Mismatches: 225, Indels: 88
0.72 0.20 0.08
Matches are distributed among these distances:
40 10 0.01
41 20 0.02
42 401 0.49
43 356 0.43
44 33 0.04
ACGTcount: A:0.32, C:0.17, G:0.29, T:0.22
Consensus pattern (42 bp):
GATGAAGAAGTCTCTCGGGTCTAAGCCGATGGGCAGATGATT
Found at i:101911 original size:86 final size:84
Alignment explanation
Indices: 101739--101967 Score: 212
Period size: 85 Copynumber: 2.7 Consensus size: 84
101729 CAAATAAAGA
* * * * * * * *
101739 GATGAAGAAG-TCTCCCGGGTCTAAGCCGATGGGTAGATGATGGATGAAGAAGTCTCTCAGGTCT
1 GATGAAG-AGCTCTCCCAGGTCTAAGTCGACGGGCAGACGATTGATAAAGAAGTCTCTCAGGACT
* * ***
101803 AAGCGAATGGGCAGACGGTG
65 AAGCAAACGGGCAGAAAATG
*
101823 GATGAAGAAG-TCTCCCAAGGTCTAAGTCGACGGGCAGAGGATT-AGTAAAAGAAGTCTCTCAGG
1 GATGAAG-AGCTCTCCC-AGGTCTAAGTCGACGGGCAGACGATTGA-T-AAAGAAGTCTCTCAGG
* *
101886 ACTGAGCAAACGGGTAGAAAATG
62 ACTAAGCAAACGGGCAGAAAATG
* * *
101909 GATGAAGAGCTCTCTCAGGTTTAAGTCGACTGGCAGACGATTGATAAAGAAAGTCTCTC
1 GATGAAGAGCTCTCCCAGGTCTAAGTCGACGGGCAGACGATTGATAAAG-AAGTCTCTC
101968 GGGATTGAAC
Statistics
Matches: 120, Mismatches: 19, Indels: 11
0.80 0.13 0.07
Matches are distributed among these distances:
84 21 0.17
85 56 0.47
86 43 0.36
ACGTcount: A:0.31, C:0.17, G:0.31, T:0.21
Consensus pattern (84 bp):
GATGAAGAGCTCTCCCAGGTCTAAGTCGACGGGCAGACGATTGATAAAGAAGTCTCTCAGGACTA
AGCAAACGGGCAGAAAATG
Found at i:102025 original size:43 final size:43
Alignment explanation
Indices: 101929--102038 Score: 120
Period size: 43 Copynumber: 2.6 Consensus size: 43
101919 TCTCTCAGGT
* *
101929 TTAAGTCGACT-GGCAGACGATTGATAAAGAAAGTCTCTCGGGA
1 TTAAGTCGA-TAGGCAGACGATTGATAAAGAAAATCTCTCGAGA
*
101972 TTGAA-CCGATAGGCAGACGATTGATGAAA-AAAATCTCTCGAG-
1 TT-AAGTCGATAGGCAGACGATTGAT-AAAGAAAATCTCTCGAGA
*
102014 TCTAAGTCGATAGGTAGACGATTGA
1 T-TAAGTCGATAGGCAGACGATTGA
102039 CTAAGGAAGT
Statistics
Matches: 57, Mismatches: 5, Indels: 10
0.79 0.07 0.14
Matches are distributed among these distances:
42 4 0.07
43 48 0.84
44 5 0.09
ACGTcount: A:0.35, C:0.15, G:0.26, T:0.24
Consensus pattern (43 bp):
TTAAGTCGATAGGCAGACGATTGATAAAGAAAATCTCTCGAGA
Found at i:102060 original size:43 final size:43
Alignment explanation
Indices: 102013--102166 Score: 159
Period size: 43 Copynumber: 3.6 Consensus size: 43
102003 AATCTCTCGA
*
102013 GTCTAAGTCGATAGGTAGACGATTGACTAAGGAAGTCTCCTAG
1 GTCTAAGTCGATAGGTAGATGATTGACTAAGGAAGTCTCCTAG
* * * *
102056 GTCTAAGCCGATAGGGAAATGATTGA-TAAAGGAAGTCTCC-CG
1 GTCTAAGTCGATAGGTAGATGATTGACT-AAGGAAGTCTCCTAG
* * * ** * *
102098 AGTTTGAGACGACGGGCAGATGATTGACAAAGGAAGTCTCCTAG
1 -GTCTAAGTCGATAGGTAGATGATTGACTAAGGAAGTCTCCTAG
*
102142 GTCTAAGTCGATGGGTAGATGATTG
1 GTCTAAGTCGATAGGTAGATGATTG
102167 TTGAAAAAGT
Statistics
Matches: 88, Mismatches: 19, Indels: 8
0.77 0.17 0.07
Matches are distributed among these distances:
42 2 0.02
43 85 0.97
44 1 0.01
ACGTcount: A:0.31, C:0.15, G:0.31, T:0.24
Consensus pattern (43 bp):
GTCTAAGTCGATAGGTAGATGATTGACTAAGGAAGTCTCCTAG
Found at i:102067 original size:86 final size:85
Alignment explanation
Indices: 101930--102203 Score: 236
Period size: 86 Copynumber: 3.2 Consensus size: 85
101920 CTCTCAGGTT
* * * *
101930 TAAGTCGACT-GGCAGACGATTGATAAAGAAAGTCT-CTCGGGAT-TGAA-CCGATAGGCAGACG
1 TAAGTCGA-TAGGCAGACGATTGACAAAGGAAGTCTCCT-AGG-TCT-AAGCCGATAGGCAGATG
*
101991 ATTGATGAAAAAAATCTCTCGAGTC
62 ATTGATGAAAAAAGTCTC-CGAGTC
* * * *
102016 TAAGTCGATAGGTAGACGATTGACTAAGGAAGTCTCCTAGGTCTAAGCCGATAGGGAAATGATTG
1 TAAGTCGATAGGCAGACGATTGACAAAGGAAGTCTCCTAGGTCTAAGCCGATAGGCAGATGATTG
* *
102081 AT-AAAGGAAGTCTCCCGAGTT
66 ATGAAA-AAAGTCT-CCGAGTC
* * ** * * * *
102102 TGAGACGACGGGCAGATGATTGACAAAGGAAGTCTCCTAGGTCTAAGTCGATGGGTAGATGATTG
1 TAAGTCGATAGGCAGACGATTGACAAAGGAAGTCTCCTAGGTCTAAGCCGATAGGCAGATGATTG
* *
102167 TTG-AAAAAGTCTACCGGGTC
66 ATGAAAAAAGTCT-CCGAGTC
*
102187 TAAGTCGATGGGCAGAC
1 TAAGTCGATAGGCAGAC
102204 AAATAATGGA
Statistics
Matches: 150, Mismatches: 31, Indels: 15
0.77 0.16 0.08
Matches are distributed among these distances:
85 31 0.21
86 116 0.77
87 3 0.02
ACGTcount: A:0.32, C:0.16, G:0.29, T:0.23
Consensus pattern (85 bp):
TAAGTCGATAGGCAGACGATTGACAAAGGAAGTCTCCTAGGTCTAAGCCGATAGGCAGATGATTG
ATGAAAAAAGTCTCCGAGTC
Found at i:102273 original size:43 final size:43
Alignment explanation
Indices: 102226--102392 Score: 178
Period size: 43 Copynumber: 3.9 Consensus size: 43
102216 AGTCTTTCGA
*
102226 GTCTAAGCTGATCG-GCAGAGGATTGACAAAAGAAGTCTCTTGG
1 GTCTAAGCTGA-CGAGCAGACGATTGACAAAAGAAGTCTCTTGG
** * * * * *
102269 GTCTAAGCCAACGAGCAAACAATTGATAAAGGAAGTCTATTGG
1 GTCTAAGCTGACGAGCAGACGATTGACAAAAGAAGTCTCTTGG
* *
102312 GTCTAAGCTGACGAGTAGACGATTGACAAAAGAAGTCTC-TCG
1 GTCTAAGCTGACGAGCAGACGATTGACAAAAGAAGTCTCTTGG
* * *
102354 GTCTAAGCTGAC-AGGCAGATGATTGATAAAGGAAGTCTC
1 GTCTAAGCTGACGA-GCAGACGATTGACAAAAGAAGTCTC
102393 CCAAGTCTAA
Statistics
Matches: 101, Mismatches: 21, Indels: 5
0.80 0.17 0.04
Matches are distributed among these distances:
41 1 0.01
42 37 0.37
43 63 0.62
ACGTcount: A:0.34, C:0.17, G:0.27, T:0.22
Consensus pattern (43 bp):
GTCTAAGCTGACGAGCAGACGATTGACAAAAGAAGTCTCTTGG
Found at i:102401 original size:85 final size:85
Alignment explanation
Indices: 102225--102422 Score: 202
Period size: 85 Copynumber: 2.3 Consensus size: 85
102215 AAGTCTTTCG
* * *
102225 AGTCTAAGCTGATCGGCAGAGGATTGACAAAAGAAGTCTCTTGGGTCTAAGCCAACGAGCAAACA
1 AGTCTAAGCTGA-CGGTAGACGATTGACAAAAGAAGTCTCTTCGGTCTAAGCCAACGAGCAAACA
***
102290 ATTGATAAAGGAAGTCTATTG
65 ATTGATAAAGGAAGTCTACCA
* ** * *
102311 GGTCTAAGCTGACGAGTAGACGATTGACAAAAGAAGTCTC-TCGGTCTAAGCTGAC-AGGCAGAT
1 AGTCTAAGCTGACG-GTAGACGATTGACAAAAGAAGTCTCTTCGGTCTAAGCCAACGA-GCAAAC
* *
102374 GATTGATAAAGGAAGTCTCCCA
64 AATTGATAAAGGAAGTCTACCA
* * *
102396 AGTCTAAGCCGAAGGGTAGATGATTGA
1 AGTCTAAGCTG-ACGGTAGACGATTGA
102423 TGGAAAAGTC
Statistics
Matches: 92, Mismatches: 17, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
84 1 0.01
85 55 0.60
86 36 0.39
ACGTcount: A:0.34, C:0.17, G:0.27, T:0.22
Consensus pattern (85 bp):
AGTCTAAGCTGACGGTAGACGATTGACAAAAGAAGTCTCTTCGGTCTAAGCCAACGAGCAAACAA
TTGATAAAGGAAGTCTACCA
Found at i:102833 original size:86 final size:85
Alignment explanation
Indices: 102637--102834 Score: 200
Period size: 86 Copynumber: 2.3 Consensus size: 85
102627 AAAAAATGAA
* * * ** * **
102637 GAAGTCTCCCGGGTCTGAGTCGACGAGCAAACAATTGATGGAAAAGTCTCCCGGGTCTGAGCTGA
1 GAAGTCTCCCGGGTCTAAGTCGATGGGCAAACAATTGATAAAAAAGTCTCCCAGGTCTGAGCCAA
* *
102702 TAGGCAGAAGATTGACAAAG
66 CAAGCAGAAGATTGACAAAG
** * * * * *
102722 GAAGTCTCTAGGGTATAAG-CTGATGGGCAGACGATTGATAAAAAAAGTCTCTCAGGTTTGAGCC
1 GAAGTCTCCCGGGTCTAAGTC-GATGGGCAAACAATTGAT-AAAAAAGTCTCCCAGGTCTGAGCC
* *
102786 AACAAGCAGATGATTGACAAAT
64 AACAAGCAGAAGATTGACAAAG
102808 GAAGTCTCCCGGGTCTAAGTCGATGGG
1 GAAGTCTCCCGGGTCTAAGTCGATGGG
102835 TAGTGATTGG
Statistics
Matches: 88, Mismatches: 22, Indels: 5
0.77 0.19 0.04
Matches are distributed among these distances:
84 1 0.01
85 29 0.33
86 57 0.65
87 1 0.01
ACGTcount: A:0.31, C:0.18, G:0.29, T:0.21
Consensus pattern (85 bp):
GAAGTCTCCCGGGTCTAAGTCGATGGGCAAACAATTGATAAAAAAGTCTCCCAGGTCTGAGCCAA
CAAGCAGAAGATTGACAAAG
Found at i:102912 original size:18 final size:18
Alignment explanation
Indices: 102889--102927 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
102879 CAATTGAAAA
*
102889 AAGAAGTCTTCCAGGTCT
1 AAGAAGTCTTCCAAGTCT
102907 AAGAAGTCTTCCAAGTCT
1 AAGAAGTCTTCCAAGTCT
102925 AAG
1 AAG
102928 CCAGCAAGCA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.33, C:0.21, G:0.21, T:0.26
Consensus pattern (18 bp):
AAGAAGTCTTCCAAGTCT
Found at i:103022 original size:43 final size:43
Alignment explanation
Indices: 102962--103140 Score: 153
Period size: 43 Copynumber: 4.2 Consensus size: 43
102952 AAGTCTCTCA
* * * *
102962 AGTCTGAGCTGACGAGCAGACAATTGATAAAAGAAATCTCCTG
1 AGTCTAAGCTGATGAGCAGACGATTGATAAAAGAAGTCTCCTG
* * * ** *
103005 AGTCTAAGCCGATGAGCAGATGACTGATGGAA-AAGTCTCCCG
1 AGTCTAAGCTGATGAGCAGACGATTGATAAAAGAAGTCTCCTG
* ** * * *
103047 AGTCTAAGCTAACAAGTAGACGATTGACAAAGGAAGTCTCCTG
1 AGTCTAAGCTGATGAGCAGACGATTGATAAAAGAAGTCTCCTG
* * * * * *
103090 AGTCTGAGCTGATGGGTACACGATAGATGAAAGAAGTCTCCTG
1 AGTCTAAGCTGATGAGCAGACGATTGATAAAAGAAGTCTCCTG
103133 AGTCTAAG
1 AGTCTAAG
103141 TAGATAGGTA
Statistics
Matches: 102, Mismatches: 33, Indels: 2
0.74 0.24 0.01
Matches are distributed among these distances:
42 29 0.28
43 73 0.72
ACGTcount: A:0.34, C:0.18, G:0.26, T:0.21
Consensus pattern (43 bp):
AGTCTAAGCTGATGAGCAGACGATTGATAAAAGAAGTCTCCTG
Found at i:103051 original size:85 final size:85
Alignment explanation
Indices: 102946--103103 Score: 208
Period size: 85 Copynumber: 1.9 Consensus size: 85
102936 CAAACAATTA
* * * * *
102946 ATGGAAAAGTCTCTCAAGTCTGAGCTGACGAGCAGACAATTGATAAAAGAAATCTCCTGAGTCTA
1 ATGGAAAAGTCTCCCAAGTCTAAGCTAACAAGCAGACAATTGACAAAAGAAATCTCCTGAGTCTA
103011 AGCCGATGAGCAGATGACTG
66 AGCCGATGAGCAGATGACTG
* * * * * *
103031 ATGGAAAAGTCTCCCGAGTCTAAGCTAACAAGTAGACGATTGACAAAGGAAGTCTCCTGAGTCTG
1 ATGGAAAAGTCTCCCAAGTCTAAGCTAACAAGCAGACAATTGACAAAAGAAATCTCCTGAGTCTA
*
103096 AGCTGATG
66 AGCCGATG
103104 GGTACACGAT
Statistics
Matches: 61, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
85 61 1.00
ACGTcount: A:0.34, C:0.19, G:0.25, T:0.22
Consensus pattern (85 bp):
ATGGAAAAGTCTCCCAAGTCTAAGCTAACAAGCAGACAATTGACAAAAGAAATCTCCTGAGTCTA
AGCCGATGAGCAGATGACTG
Found at i:103241 original size:128 final size:128
Alignment explanation
Indices: 102952--103241 Score: 298
Period size: 128 Copynumber: 2.3 Consensus size: 128
102942 ATTAATGGAA
* * * * *
102952 AAGTCTCTCAAGTCTGAGCTGACGAGCAGACAATTGATAAAAGAAATCTCCTGAGTCTAAGCCGA
1 AAGTCTTTCAAGTCTGAGCTGACGAGTAGACGATAGATAAAAGAAATCTCCTGAGTCTAAGCAGA
** * * *
103017 TGAGCAGATGACTGATGGAAAAGTCTCCCGAGTCTAAGCTAACAAGTAGACGATTGACAAAGG
66 TGAGCAGACAAATGATGGAAAAATCTCCCGAGTCTAAGCTAACAAGCAGACGATTGACAAAGG
* * * * * * * *
103080 AAGTC-TCCTGAGTCTGAGCTGATGGGTACACGATAGATGAAAGAAGTCTCCTGAGTCTAAGTAG
1 AAGTCTTTC-AAGTCTGAGCTGACGAGTAGACGATAGATAAAAGAAATCTCCTGAGTCTAAGCAG
* * * * *
103144 AT-AGGTAGACAAATGATGGAAAAATCTCTCG-GATCTAAGCTAACAGGCAGATGATTGACTAAG
65 ATGA-GCAGACAAATGATGGAAAAATCTCCCGAG-TCTAAGCTAACAAGCAGACGATTGACAAAG
103207 G
128 G
* * *
103208 AAGTCTTTCAATTCTAAGCTGACAAGTAGACGAT
1 AAGTCTTTCAAGTCTGAGCTGACGAGTAGACGAT
103242 TAATGGAAAA
Statistics
Matches: 127, Mismatches: 31, Indels: 8
0.77 0.19 0.05
Matches are distributed among these distances:
127 3 0.02
128 122 0.96
129 2 0.02
ACGTcount: A:0.35, C:0.18, G:0.24, T:0.23
Consensus pattern (128 bp):
AAGTCTTTCAAGTCTGAGCTGACGAGTAGACGATAGATAAAAGAAATCTCCTGAGTCTAAGCAGA
TGAGCAGACAAATGATGGAAAAATCTCCCGAGTCTAAGCTAACAAGCAGACGATTGACAAAGG
Found at i:103323 original size:127 final size:128
Alignment explanation
Indices: 103004--103398 Score: 291
Period size: 128 Copynumber: 3.1 Consensus size: 128
102994 GAAATCTCCT
* * * * * * * * * * *
103004 GAGTCTAAGCCGATGAGCAGATGACTGATGGAAAAGTCTC-CCGAGTCTAAGCTAACAAGTAGAC
1 GAGTCTAAGCCGACGGGTAGACGATTTATGGAAAAATCTCTCAGA-TCTAAGCTAACAGGCAGAT
* * * *** * *
103068 GATTGACAAAGG-AAGTCTCCTGAGTCTGAGCTGATGGGTACACGAT-AGATGAAAGAAGTCT-C
65 GATTGACAAAGGAAAGTCT-CTCAGTCTAAGCCGACAAGTAGACGATCA-ATGGAA-AAGTCTCC
*
103130 CT
127 CA
** ** * * * *
103132 GAGTCTAAGTAGATAGGTAGACAAATGATGGAAAAATCTCTCGGATCTAAGCTAACAGGCAGATG
1 GAGTCTAAGCCGACGGGTAGACGATTTATGGAAAAATCTCTCAGATCTAAGCTAACAGGCAGATG
* * * * * *
103197 ATTGACTAAGG-AAGTCTTTCAATTCTAAGCTGACAAGTAGACGATTAATGGAAAAGTGTCCCA
66 ATTGACAAAGGAAAGTCTCTC-AGTCTAAGCCGACAAGTAGACGATCAATGGAAAAGTCTCCCA
* * * *
103260 -AGTCTAAGCCGACGGGTAGACGATTTATGGAAAAGTCTCTCAGATCTAAGAC-GACGGGTAGAT
1 GAGTCTAAGCCGACGGGTAGACGATTTATGGAAAAATCTCTCAGATCTAAG-CTAACAGGCAGAT
*** *
103323 GATTGACAAAGGAAAAGTCTCTCAGTCTAAGCCGATGGGTAGACGATCGATGGAAAAGTCTCCCA
65 GATTGACAAAGG-AAAGTCTCTCAGTCTAAGCCGACAAGTAGACGATCAATGGAAAAGTCTCCCA
*
103388 GGGTCTAAGCC
1 GAGTCTAAGCC
103399 AACAAGCAAA
Statistics
Matches: 211, Mismatches: 48, Indels: 15
0.77 0.18 0.05
Matches are distributed among these distances:
127 66 0.31
128 124 0.59
129 21 0.10
ACGTcount: A:0.34, C:0.18, G:0.26, T:0.22
Consensus pattern (128 bp):
GAGTCTAAGCCGACGGGTAGACGATTTATGGAAAAATCTCTCAGATCTAAGCTAACAGGCAGATG
ATTGACAAAGGAAAGTCTCTCAGTCTAAGCCGACAAGTAGACGATCAATGGAAAAGTCTCCCA
Found at i:103755 original size:85 final size:85
Alignment explanation
Indices: 103250--105037 Score: 467
Period size: 85 Copynumber: 21.1 Consensus size: 85
103240 ATTAATGGAA
* * * * * * *
103250 AAGTGTCCCAAGTCTAAGCCGACGGGTAGACGATTTATGGAAAAGTCTCTC-AGATCTAAGACGA
1 AAGTCTCCCGAGTCTAAGCCGACGGGTAGATGATTGATGGAAAAGTCTCCCGAG-TCTGAGCCGA
* * *
103314 CGGGTAGATGATTGACAAAGG
65 TGGGCAGACGATTGACAAAGG
* * * * * *
103335 AAAAGTCTCTC-AGTCTAAGCCGATGGGTAGACGATCGATGGAAAAGTCTCCCAGGGTCTAAGCC
1 --AAGTCTCCCGAGTCTAAGCCGACGGGTAGATGATTGATGGAAAAGTCTCCC-GAGTCTGAGCC
* *** * * *
103399 AACAAGCAAACAATTGATGAAA--
63 GATGGGCAGACGATTGA-CAAAGG
* ** * * * * *** * ** * *
103421 TAGTCTCTAG-GTATAAGCCGATGGGCA-A-AAAAAATGAAAAAGTCTTTCAAGTCTGAGCCGAC
1 AAGTCTCCCGAGTCTAAGCCGACGGGTAGATGATTGATGGAAAAGTCTCCCGAGTCTGAGCCGAT
** **
103483 AAGCAGACGATTGATGGAA--
66 GGGCAGACGATTGA-CAAAGG
* * * * * * ** *
103502 AAGTCTCTCAAGTCTAAGCTGACGGGCAAACGATTGATAAAAGAAGTCTCCC-ATGTCTGAGTCG
1 AAGTCTCCCGAGTCTAAGCCGACGGGTAGATGATTGATGGAA-AAGTCTCCCGA-GTCTGAGCCG
* *
103566 ATGGGTAGGA-GATTAACAAAGG
64 ATGGGCA-GACGATTGACAAAGG
* * ** * * * ** * * *
103588 AAGTCTCCC-AGGCCTAAGCTGATAGGCAGACGATTGATGGAAAGGTCTCCCCTGTCTAAGTCAA
1 AAGTCTCCCGA-GTCTAAGCCGACGGGTAGATGATTGATGGAAAAGTCTCCCGAGTCTGAGCCGA
* * * *
103652 TGAGCAGACAATTAACAAAGA
65 TGGGCAGACGATTGACAAAGG
** * * *
103673 AAGTCTCCCGAGTCTAAGTTGACGGGCAGATGATTGATGGAAAAGCCTCCCGAGACTGAGCCGAT
1 AAGTCTCCCGAGTCTAAGCCGACGGGTAGATGATTGATGGAAAAGTCTCCCGAGTCTGAGCCGAT
*
103738 GGGCAAACGATTGACAAAGG
66 GGGCAGACGATTGACAAAGG
** * * * * *
103758 AAGTCTCTTGGGTCTAAGCCGATGGATAAATGATTGATGGAAAAGTCTCCC-AGGTCTGAGCCAA
1 AAGTCTCCCGAGTCTAAGCCGACGGGTAGATGATTGATGGAAAAGTCTCCCGA-GTCTGAGCCGA
* * *
103822 CGGGTAGACGATTGATAAAGG
65 TGGGCAGACGATTGACAAAGG
* * * *
103843 AAGTCTTCC-AGTTCTAAGCCGACAGGTAGACGATTGATGAAAAAGTCTCCCGAGTCTGAGCCGA
1 AAGTCTCCCGAG-TCTAAGCCGACGGGTAGATGATTGATGGAAAAGTCTCCCGAGTCTGAGCCGA
* *
103907 TGGGCAGACGATTGATAAAAG
65 TGGGCAGACGATTGACAAAGG
* * * * * * * * ** *
103928 ACGCCTCCTGGGTCTAAGTCGATGGGTAGATAATAGATAAAAAAAGTCT-CCTAGGTCTGAGCCG
1 AAGTCTCCCGAGTCTAAGCCGACGGGTAGATGATTGAT-GGAAAAGTCTCCCGA-GTCTGAGCCG
* * * *
103992 ATGAGCAGACAATTAACAAAAG
64 ATGGGCAGACGATTGACAAAGG
* * * ** * * * * * *
104014 AAGTCTCTCGGGTCTAAGCCAATAGGCAGAAGATTGAT-AATGAAAGTCTCCCGGGTCTAAGCAG
1 AAGTCTCCCGAGTCTAAGCCGACGGGTAGATGATTGATGGA--AAAGTCTCCCGAGTCTGAGCCG
* * * * *
104078 ACGAGGCAAATGATTGATATAGG
64 ATG-GGCAGACGATTGACAAAGG
* * * ** * * * *
104101 AAGTCTCCC-AGGTCTAAGGC-ATCAGGTAGATGATTGTTCAAAAAATCTCTCGAGTCTAAGCTG
1 AAGTCTCCCGA-GTCTAAGCCGA-CGGGTAGATGATTGATGGAAAAGTCTCCCGAGTCTGAGCCG
* * * ***
104164 ATGAGCAAAAGATTGATGGA-G
64 ATGGGCAGACGATTGACAAAGG
* * * ** * * ** * ** * * *
104185 AAATCTCTCGGGTCTAAGCCGATAGGCAAACAATTGAT-GAAAGAGCCTATCGGGTCTAAGTCGA
1 AAGTCTCCCGAGTCTAAGCCGACGGGTAGATGATTGATGGAAA-AGTCTCCCGAGTCTGAGCCGA
** *
104249 TATGCAGATGATTGACAAAGG
65 TGGGCAGACGATTGACAAAGG
* ** * * * * * * *
104270 AAGTTTTTCAAGTCTAAGCCGATGGGTAGA-GAATGATGGAAAACTCT-CCTAGTTCTAAGTCGA
1 AAGTCTCCCGAGTCTAAGCCGACGGGTAGATGATTGATGGAAAAGTCTCCCGAG-TCTGAGCCGA
* * * *
104333 CGAGCAGACGATTGATAAAGA
65 TGGGCAGACGATTGACAAAGG
* ** * * * * *
104354 AAGTCT-CCTAGCTCTAAGCCGATAGGCAAATGATTGATGGAAAAGTCTCTCGAGTCTAAGTCGA
1 AAGTCTCCCGAG-TCTAAGCCGACGGGTAGATGATTGATGGAAAAGTCTCCCGAGTCTGAGCCGA
* * **
104418 TAGGCAGACAATTGATGGAA--
65 TGGGCAGACGATTGA-CAAAGG
* * * * * * * ** ** * * * *
104438 AAGTTTCCTGAGTCTAAGTCGATGGCT-GAAGACTGATAAAAAAGTCTCTTGGGTCTAAGTCGAC
1 AAGTCTCCCGAGTCTAAGCCGACGGGTAGATGATTGATGGAAAAGTCTCCCGAGTCTGAGCCGAT
** * *** **
104502 AAGCAGACAAAAAATGAA-G
66 GGGCAGACGATTGACAAAGG
* * ** * * * *
104521 AAGTCTCCCAAGTCAAATTCGACAGGTAGATGATTGATGAAAAAATCTCCCCG-GTCTAAGCCGA
1 AAGTCTCCCGAGTCTAAGCCGACGGGTAGATGATTGATGGAAAAGTCT-CCCGAGTCTGAGCCGA
**** * *
104585 CAAACAGATGATTAACAAAGG
65 TGGGCAGACGATTGACAAAGG
* * * * ** * *
104606 AAGTCT-CCGAAGTATAAGCCAATGGGCAGACAATTGAT-AAAGAAGTCTCCCGTGT-TAGAG-C
1 AAGTCTCCCG-AGTCTAAGCCGACGGGTAGATGATTGATGGAA-AAGTCTCCCGAGTCT-GAGCC
* * * * *
104667 TATCAGGCAAACAATTAACAAAGG
63 GAT-GGGCAGACGATTGACAAAGG
* * * ** * * * ** * *
104691 AAGTATCCCGGGTCTAAGCCAACAAGCAGATGATTGAT-AAAATAATCTCTTGGGTC-GAACCGA
1 AAGTCTCCCGAGTCTAAGCCGACGGGTAGATGATTGATGGAAA-AGTCTCCCGAGTCTGAGCCGA
* *
104754 TGGGCAGACGATTGATAAATG
65 TGGGCAGACGATTGACAAAGG
** * * ** * *
104775 AAACCTCCCGAGTCTAAGCCGATGGGTAGACGATTGATGGAAAAGTCTCTTGGGTCTAAGCCGAT
1 AAGTCTCCCGAGTCTAAGCCGACGGGTAGATGATTGATGGAAAAGTCTCCCGAGTCTGAGCCGAT
* *
104840 GAGCAAACGATTGACAAAGG
66 GGGCAGACGATTGACAAAGG
* * * * * * * ** * ** *
104860 AAGTCTCTCGGGTCTAAGTCTATGGGTAGACGATTGATGGAAAAGTTTTTCGGGTCCAAGCTGAT
1 AAGTCTCCCGAGTCTAAGCCGACGGGTAGATGATTGATGGAAAAGTCTCCCGAGTCTGAGCCGAT
** * **
104925 GGGTTGACAATTGACAAATA
66 GGGCAGACGATTGACAAAGG
* * * * * * * * * * * * *
104945 AAGTCTCCTGGGTCTAAGTCGATGGGCAAACGATTGATGGAAAAATCTCCCAAGTATAAGCTGAC
1 AAGTCTCCCGAGTCTAAGCCGACGGGTAGATGATTGATGGAAAAGTCTCCCGAGTCTGAGCCGAT
* * *
105010 GGGAAGATGATAGACAAAGG
66 GGGCAGACGATTGACAAAGG
*
105030 AAATCTCC
1 AAGTCTCC
105038 TAGGTTTGAG
Statistics
Matches: 1270, Mismatches: 376, Indels: 112
0.72 0.21 0.06
Matches are distributed among these distances:
81 33 0.03
82 30 0.02
83 68 0.05
84 266 0.21
85 617 0.49
86 185 0.15
87 65 0.05
88 6 0.00
ACGTcount: A:0.34, C:0.18, G:0.26, T:0.22
Consensus pattern (85 bp):
AAGTCTCCCGAGTCTAAGCCGACGGGTAGATGATTGATGGAAAAGTCTCCCGAGTCTGAGCCGAT
GGGCAGACGATTGACAAAGG
Found at i:103920 original size:42 final size:42
Alignment explanation
Indices: 102950--108196 Score: 604
Period size: 42 Copynumber: 124.3 Consensus size: 42
102940 CAATTAATGG
* * * * * * * *
102950 AAAAGTCTCTCAAGTCTGAGCTGACGAGCAGACAATTGATAA
1 AAAAGTCTCCCGAGTCTAAGCCGATGGGCAGACGATTGATGA
* * * * * *
102992 AAGAAATCTCCTGAGTCTAAGCCGATGAGCAGATGACTGATGG
1 AA-AAGTCTCCCGAGTCTAAGCCGATGGGCAGACGATTGATGA
** *** * *
103035 AAAAGTCTCCCGAGTCTAAGCTAACAAGTAGACGATTGA-CA
1 AAAAGTCTCCCGAGTCTAAGCCGATGGGCAGACGATTGATGA
* * * * * *
103076 AAGGAAGTCTCCTGAGTCTGAGCTGATGGGTACACGATAGATGA
1 AA--AAGTCTCCCGAGTCTAAGCCGATGGGCAGACGATTGATGA
* ** * * * *
103120 AAGAAGTCTCCTGAGTCTAAGTAGATAGGTAGACAAATGATGGA
1 AA-AAGTCTCCCGAGTCTAAGCCGATGGGCAGACGATTGAT-GA
* ** ** *
103164 AAAA-TCTCTCG-GATCTAAGCTAACAGGCAGATGATTGACT-A
1 AAAAGTCTCCCGAG-TCTAAGCCGATGGGCAGACGATTGA-TGA
* ** * * * *** * * *
103205 AGGAAGTCTTTCAATTCTAAGCTGACAAGTAGACGATTAATGG
1 A-AAAGTCTCCCGAGTCTAAGCCGATGGGCAGACGATTGATGA
* * * * * *
103248 AAAAGTGTCCCAAGTCTAAGCCGACGGGTAGACGATTTATGG
1 AAAAGTCTCCCGAGTCTAAGCCGATGGGCAGACGATTGATGA
* * * * * * *
103290 AAAAGTCTCTC-AGATCTAAGACGACGGGTAGATGATTGACAAAGG
1 AAAAGTCTCCCGAG-TCTAAGCCGATGGGCAGACGATTG---ATGA
* * * *
103335 AAAAGTCTCTC-AGTCTAAGCCGATGGGTAGACGATCGATGG
1 AAAAGTCTCCCGAGTCTAAGCCGATGGGCAGACGATTGATGA
* * *** * *
103376 AAAAGTCTCCCAGGGTCTAAGCCAACAAGCAAACAATTGATGA
1 AAAAGTCTCCC-GAGTCTAAGCCGATGGGCAGACGATTGATGA
* ** * * ***
103419 AATAGTCTCTAG-GTATAAGCCGATGGGCA-A-AAAAAATGA
1 AAAAGTCTCCCGAGTCTAAGCCGATGGGCAGACGATTGATGA
** * * *** *
103458 AAAAGTCTTTCAAGTCTGAGCCGACAAGCAGACGATTGATGG
1 AAAAGTCTCCCGAGTCTAAGCCGATGGGCAGACGATTGATGA
* * * * * *
103500 AAAAGTCTCTCAAGTCTAAGCTGACGGGCAAACGATTGATAA
1 AAAAGTCTCCCGAGTCTAAGCCGATGGGCAGACGATTGATGA
* * * **
103542 AAGAAGTCTCCC-ATGTCTGAGTCGATGGGTAGGA-GATT-AACA
1 AA-AAGTCTCCCGA-GTCTAAGCCGATGGGCA-GACGATTGATGA
* * * *
103584 AAGGAAGTCTCCC-AGGCCTAAGCTGATAGGCAGACGATTGATGG
1 AA--AAGTCTCCCGA-GTCTAAGCCGATGGGCAGACGATTGATGA
* ** * * * * * **
103628 AAAGGTCTCCCCTGTCTAAGTCAATGAGCAGACAATTAACAA
1 AAAAGTCTCCCGAGTCTAAGCCGATGGGCAGACGATTGATGA
** * * *
103670 AGAAAGTCTCCCGAGTCTAAGTTGACGGGCAGATGATTGATGG
1 A-AAAGTCTCCCGAGTCTAAGCCGATGGGCAGACGATTGATGA
* * * * *
103713 AAAAGCCTCCCGAGACTGAGCCGATGGGCAAACGATTGA-CA
1 AAAAGTCTCCCGAGTCTAAGCCGATGGGCAGACGATTGATGA
** * ** * * *
103754 AAGGAAGTCTCTTGGGTCTAAGCCGATGGATAAATGATTGATGG
1 AA--AAGTCTCCCGAGTCTAAGCCGATGGGCAGACGATTGATGA
* * * *
103798 AAAAGTCTCCC-AGGTCTGAGCCAACGGGTAGACGATTGAT-A
1 AAAAGTCTCCCGA-GTCTAAGCCGATGGGCAGACGATTGATGA
* ** *
103839 AAGGAAGTCTTCC-AGTTCTAAGCCGACAGGTAGACGATTGATGA
1 AA--AAGTCTCCCGAG-TCTAAGCCGATGGGCAGACGATTGATGA
*
103883 AAAAGTCTCCCGAGTCTGAGCCGATGGGCAGACGATTGAT-A
1 AAAAGTCTCCCGAGTCTAAGCCGATGGGCAGACGATTGATGA
* * * * * ** * *
103924 AAAGACGCCTCCTGGGTCTAAGTCGATGGGTAGATAATAGATAAA
1 AAA-A-GTCTCCCGAGTCTAAGCCGATGGGCAGACGATTGAT-GA
* * * * * **
103969 AAAAGTCT-CCTAGGTCTGAGCCGATGAGCAGACAATTAACAA
1 AAAAGTCTCCCGA-GTCTAAGCCGATGGGCAGACGATTGATGA
* * * * *
104011 AAGAAGTCTCTCGGGTCTAAGCCAATAGGCAGAAGATTGAT-A
1 AA-AAGTCTCCCGAGTCTAAGCCGATGGGCAGACGATTGATGA
* * * * *
104053 ATGAAAGTCTCCCGGGTCTAAGCAGACGAGGCAAATGATTGAT-A
1 A--AAAGTCTCCCGAGTCTAAGCCGATG-GGCAGACGATTGATGA
* * * * * * *
104097 TAGGAAGTCTCCC-AGGTCTAAGGC-ATCAGGTAGATGATTGTTCA
1 -A-AAAGTCTCCCGA-GTCTAAGCCGAT-GGGCAGACGATTGATGA
* * * * * *
104141 AAAAATCTCTCGAGTCTAAGCTGATGAGCAAAAGATTGATGGA
1 AAAAGTCTCCCGAGTCTAAGCCGATGGGCAGACGATTGAT-GA
* * * * * *
104184 GAAA-TCTCTCGGGTCTAAGCCGATAGGCAAACAATTGATGA
1 AAAAGTCTCCCGAGTCTAAGCCGATGGGCAGACGATTGATGA
* * ** * * ** * *
104225 AAGAGCCTATCGGGTCTAAGTCGATATGCAGATGATTGA-CA
1 AAAAGTCTCCCGAGTCTAAGCCGATGGGCAGACGATTGATGA
* ** * * * *
104266 AAGGAAGTTTTTCAAGTCTAAGCCGATGGGTAGA-GAATGATGG
1 AA--AAGTCTCCCGAGTCTAAGCCGATGGGCAGACGATTGATGA
* * * * * *
104309 AAAACTCT-CCTAGTTCTAAGTCGACGAGCAGACGATTGATAA
1 AAAAGTCTCCCGAG-TCTAAGCCGATGGGCAGACGATTGATGA
* * * * *
104351 AGAAAGTCT-CCTAGCTCTAAGCCGATAGGCAAATGATTGATGG
1 A-AAAGTCTCCCGAG-TCTAAGCCGATGGGCAGACGATTGATGA
* * * * *
104394 AAAAGTCTCTCGAGTCTAAGTCGATAGGCAGACAATTGATGG
1 AAAAGTCTCCCGAGTCTAAGCCGATGGGCAGACGATTGATGA
* * * * * * *
104436 AAAAGTTTCCTGAGTCTAAGTCGAT-GGCTGAAGACTGATAA
1 AAAAGTCTCCCGAGTCTAAGCCGATGGGCAGACGATTGATGA
** * * *** * ***
104477 AAAAGTCTCTTGGGTCTAAGTCGACAAGCAGACAAAAAATGA
1 AAAAGTCTCCCGAGTCTAAGCCGATGGGCAGACGATTGATGA
* * * ** ** * *
104519 AGAAGTCTCCCAAGTCAAATTCGACAGGTAGATGATTGATGA
1 AAAAGTCTCCCGAGTCTAAGCCGATGGGCAGACGATTGATGA
* **** * **
104561 AAAAATCTCCCCG-GTCTAAGCCGACAAACAGATGATT-AACA
1 AAAAGTCT-CCCGAGTCTAAGCCGATGGGCAGACGATTGATGA
* * *
104602 AAGGAAGTCT-CCGAAGTATAAGCCAATGGGCAGACAATTGAT-A
1 AA--AAGTCTCCCG-AGTCTAAGCCGATGGGCAGACGATTGATGA
* * * * * **
104645 AAGAAGTCTCCCGTGT-TAGAG-CTATCAGGCAAACAATT-AACA
1 AA-AAGTCTCCCGAGTCTA-AGCCGAT-GGGCAGACGATTGATGA
* * * *** *
104687 AAGGAAGTATCCCGGGTCTAAGCCAACAAGCAGATGATTGAT-A
1 AA--AAGTCTCCCGAGTCTAAGCCGATGGGCAGACGATTGATGA
* ** * *
104730 AAATAATCTCTTGGGTCGAA-CCGATGGGCAGACGATTGAT-A
1 AAA-AGTCTCCCGAGTCTAAGCCGATGGGCAGACGATTGATGA
** * *
104771 AATGAAACCTCCCGAGTCTAAGCCGATGGGTAGACGATTGATGG
1 AA--AAGTCTCCCGAGTCTAAGCCGATGGGCAGACGATTGATGA
** * * * *
104815 AAAAGTCTCTTGGGTCTAAGCCGATGAGCAAACGATTGA-CA
1 AAAAGTCTCCCGAGTCTAAGCCGATGGGCAGACGATTGATGA
* * * * * *
104856 AAGGAAGTCTCTCGGGTCTAAGTCTATGGGTAGACGATTGATGG
1 AA--AAGTCTCCCGAGTCTAAGCCGATGGGCAGACGATTGATGA
* ** * * * ** * **
104900 AAAAGTTTTTCGGGTCCAAGCTGATGGGTTGACAATTGACAA
1 AAAAGTCTCCCGAGTCTAAGCCGATGGGCAGACGATTGATGA
* * * *
104942 ATAAAGTCTCCTGGGTCTAAGTCGATGGGCAAACGATTGATGGA
1 A-AAAGTCTCCCGAGTCTAAGCCGATGGGCAGACGATTGAT-GA
* * * * * * * *
104986 AAAA-TCTCCCAAGTATAAGCTGACGGGAAGATGATAGA-CA
1 AAAAGTCTCCCGAGTCTAAGCCGATGGGCAGACGATTGATGA
* * * * * *** * * *
105026 AAGGAAATCT-CCTAGGTTTGAGTCGACAAGCAAATGATAGAT-A
1 AA--AAGTCTCCCGA-GTCTAAGCCGATGGGCAGACGATTGATGA
* ** * * * * *
105069 AAGGAAGTCTCTC-AGTTCTAAGCTTATAGGCAAATGAATGATGG
1 AA--AAGTCTCCCGAG-TCTAAGCCGATGGGCAGACGATTGATGA
* ** * * * *
105113 AAATGTCT-CTTAGGTCTAAGCCAATAGGCAAACGATTGA-AA
1 AAAAGTCTCCCGA-GTCTAAGCCGATGGGCAGACGATTGATGA
* * * * * * *
105154 AAGGAAATCTCTCTG-CTCTAAGCCAATAGGCAGATGATTGATGG
1 AA--AAGTCTC-CCGAGTCTAAGCCGATGGGCAGACGATTGATGA
* * * * * *
105198 AAAAGTCTCTCGAGTCTAAGTCGATAGGTAGATGATTGATGG
1 AAAAGTCTCCCGAGTCTAAGCCGATGGGCAGACGATTGATGA
** * * *
105240 AAAAGTCT-CTTAGGTCTAAGCTGACGGGCCGACGATTGATGA
1 AAAAGTCTCCCGA-GTCTAAGCCGATGGGCAGACGATTGATGA
* * * * * *
105282 AAAAGTCTCCCGGGACCAAGCTGATGGGCAAACGATTGACAAAGGA
1 AAAAGTCTCCCGAGTCTAAGCCGATGGGCAGACGATTG----ATGA
* * * *
105328 AAAA-TCCCCCAAGTCTAAGCCGACGGGCAAACGATTGATGGA
1 AAAAGTCTCCCGAGTCTAAGCCGATGGGCAGACGATTGAT-GA
* * ** ** * **
105370 AAAA-TCTCTCGGGTACTAAATCGATAAGCAGATGATTGACAA
1 AAAAGTCTCCCGAGT-CTAAGCCGATGGGCAGACGATTGATGA
* * * * * * *
105412 AAGAAGTCTCCCGGGTCTAAGTCTATGAGCAAACAATTGATGG
1 AA-AAGTCTCCCGAGTCTAAGCCGATGGGCAGACGATTGATGA
* *** * * * **
105455 AGAAGTCTTTTGGGTCTGAA-CTGA-GAGGCAGATGATTGACAA
1 AAAAGTCTCCCGAGTCT-AAGCCGATG-GGCAGACGATTGATGA
* * * ** * * *
105497 AAGAAGTCTCTCGGGTCTAAGCTGACAGGTAGACAATTGATGG
1 AA-AAGTCTCCCGAGTCTAAGCCGATGGGCAGACGATTGATGA
* * * * *
105540 AAAAGTCTCTC-AGGTCTAAGCTGATGAAG-AGACAATTGA-CA
1 AAAAGTCTCCCGA-GTCTAAGCCGATG-GGCAGACGATTGATGA
* * * * * * ** * * *
105581 ATGGAAGTTTCTCGAGTTTGAGCAGACAGGTAGATGATAGATGA
1 A--AAAGTCTCCCGAGTCTAAGCCGATGGGCAGACGATTGATGA
* * * * * *
105625 AGGAAGTCTCCTGAGTCTAAG-CTAAGGAGCAGACGAATGATGG
1 A-AAAGTCTCCCGAGTCTAAGCCGATGG-GCAGACGATTGATGA
* * * * * * * *
105668 AAAAGTCTTCTGGGTCTAAACTGATAGGTAGACGATTGACTAA
1 AAAAGTCTCCCGAGTCTAAGCCGATGGGCAGACGATTGA-TGA
* * * * *
105711 AAAAGTCTCCCGATTCTAAGCTGATGGGAAGATGATTGATGG
1 AAAAGTCTCCCGAGTCTAAGCCGATGGGCAGACGATTGATGA
* * * * ** *
105753 AAAAGTCTCTC-AGGTCTAA-ACTATGGGTAGTTGATTGATGG
1 AAAAGTCTCCCGA-GTCTAAGCCGATGGGCAGACGATTGATGA
* * * * * *
105794 AAAAGTTTCCCAAGTCTAAGCCGATGGGTAGATGATTGACAAAGG
1 AAAAGTCTCCCGAGTCTAAGCCGATGGGCAGACGATTG---ATGA
* * * * * *
105839 AAAAGTCTCACG-GTTTAAGCCGACGAGCAGATGATTGATGG
1 AAAAGTCTCCCGAGTCTAAGCCGATGGGCAGACGATTGATGA
* * *** *
105880 AAACGTCTCCC-AGGTCTAAGCTGACAAGCAAACGATTGATGA
1 AAAAGTCTCCCGA-GTCTAAGCCGATGGGCAGACGATTGATGA
* * * ** **
105922 AATAGTCTCCC-AGGTATATGCCGACCGGCATG-CAGA-AAATGA
1 AAAAGTCTCCCGA-GTCTAAGCCGATGGGCA-GAC-GATTGATGA
* * * ** * *
105964 AGAAG-CTTCCAAGTCTCAA-CCGACAGGTAGACGATTAATAGA
1 AAAAGTCTCCCGAGTCT-AAGCCGATGGGCAGACGATTGAT-GA
* * * * ** * **
106006 AAAA-TCTCTCGTGTCTAAGCCAACGGGCA-AATATTAACAA
1 AAAAGTCTCCCGAGTCTAAGCCGATGGGCAGACGATTGATGA
** * * * * *
106046 AGAAAGTCT-CATAGGTCTAAGCCAACGGGTAGATGATTAAT-A
1 A-AAAGTCTCCCGA-GTCTAAGCCGATGGGCAGACGATTGATGA
* * * **
106088 AAGGAAGTCT-CCTACGTCTGAGCTGATGGGCAGACGATT-AACA
1 AA--AAGTCTCCCGA-GTCTAAGCCGATGGGCAGACGATTGATGA
* * * ** ** *
106131 AAGGAAGTCTCTCAAGCCTAAGTTGACAGGCAGATGATTGATG-
1 AA--AAGTCTCCCGAGTCTAAGCCGATGGGCAGACGATTGATGA
* ** * * * *
106174 GAAAGTTCTCTCTTA-TCTAAGTCAATGAGCAGACGATTGA-CA
1 AAAAG-TCTC-CCGAGTCTAAGCCGATGGGCAGACGATTGATGA
* * * ** ** * *
106216 CAGGAAGTCTCTC-AGGACTAAGCTAACAGGCACACGATTGATGG
1 -A-AAAGTCTCCCGA-GTCTAAGCCGATGGGCAGACGATTGATGA
* * * * * *
106260 AAAAGTCTCTCGAGTTTGAA-CCGATAGGCAAATGATTGA-CA
1 AAAAGTCTCCCGAGTCT-AAGCCGATGGGCAGACGATTGATGA
** * * * * *
106301 AAGGAAGTCTCTTGGGTCTAAGCTGATGGGCAAATGATTTAT-A
1 AA--AAGTCTCCCGAGTCTAAGCCGATGGGCAGACGATTGATGA
* * *
106344 GAAAGGT-TACCCTG-GTCTGAGCCGATGGGTAGACGATTGA-GAA
1 -AAAAGTCT-CCC-GAGTCTAAGCCGATGGGCAGACGATTGATG-A
* * * * *
106387 AAGAAGTCTCTCGAGTCTAAGCTGACGGGTAGACAATTGATGA
1 AA-AAGTCTCCCGAGTCTAAGCCGATGGGCAGACGATTGATGA
** * * * * *
106430 AAAAGTCTTTC-AGGTTTGAG-CGACGAGCAGACGATTGA-CA
1 AAAAGTCTCCCGA-GTCTAAGCCGATGGGCAGACGATTGATGA
** ** * * *
106470 AAGGGCATCTCTTGGGTCTAAGCCGAT-GGCAGACGATAGATAAA
1 AAAAG--TCTCCCGAGTCTAAGCCGATGGGCAGACGATTGAT-GA
* * * **
106514 AAAAGTCTCCTCG-GTCTGAGCCGATGAGCAGACAATTGACAA
1 AAAAGTCTCC-CGAGTCTAAGCCGATGGGCAGACGATTGATGA
* * * *
106556 AAGAAGTCT-CCTAGGTCTAAACCAATGGGCAGATGATTGAT-A
1 AA-AAGTCTCCCGA-GTCTAAGCCGATGGGCAGACGATTGATGA
* * * * ** * * *
106598 AAGGAAGTCTCTCGGGTTTAAGCAGACAGACAAACTATTGAT-A
1 AA--AAGTCTCCCGAGTCTAAGCCGATGGGCAGACGATTGATGA
* * * * * * *
106641 TAGGAAGTCTCCTGAGTCTTAGGCGTTAGGCAGAAGATTGATCG-
1 -A-AAAGTCTCCCGAGTCTAAGCCGATGGGCAGACGATTGAT-GA
* * * *** * *
106685 AAAAGTCTCCTGGGTCTAAGCTGACAAGCAAACGATTGATGG
1 AAAAGTCTCCCGAGTCTAAGCCGATGGGCAGACGATTGATGA
* * ** * *
106727 AAAAGTTTCCCGGGTCTAAGCTAAT-AGCAAAAC-ATTTGATGA
1 AAAAGTCTCCCGAGTCTAAGCCGATGGGC-AGACGA-TTGATGA
* ** * * ** * **
106769 AAGAGTCTATCGGGTCTAAGCTGATATGCAGATGATTGACAA
1 AAAAGTCTCCCGAGTCTAAGCCGATGGGCAGACGATTGATGA
* * * ** * * * *
106811 AGAAAGTTTCCTGGGTCTAAGTTGATGGGCAGACGAATAAAGG
1 A-AAAGTCTCCCGAGTCTAAGCCGATGGGCAGACGATTGATGA
* * * * *
106854 AAAACTCT-CCTAGGTCTAAGCTGATGGGCAGATGATTGATAA
1 AAAAGTCTCCCGA-GTCTAAGCCGATGGGCAGACGATTGATGA
* * * * *
106896 AGAAAGTCT-CCTAGGTCTAATCTGATGGGCAGATGATTGATGG
1 A-AAAGTCTCCCGA-GTCTAAGCCGATGGGCAGACGATTGATGA
* ** * *
106939 AAAAGTCT-CCTAGGTCTAAGCCGACAGGCA-ACAATTGATGG
1 AAAAGTCTCCCGA-GTCTAAGCCGATGGGCAGACGATTGATGA
* * * *
106980 AAAAGTTTCTCGGGTCTAAGTCGATGGGCAGACGATTGATGA
1 AAAAGTCTCCCGAGTCTAAGCCGATGGGCAGACGATTGATGA
*** * * * * * ***
107022 AAAAGTCTTTTGGGTCTAAGCCAAAGAGCAGACAAAAAATGA
1 AAAAGTCTCCCGAGTCTAAGCCGATGGGCAGACGATTGATGA
** * * * * *
107064 AGTA-T-TTCAG-GTCTAAGCCGATAGGCAGACAATTGGTGA
1 AAAAGTCTCCCGAGTCTAAGCCGATGGGCAGACGATTGATGA
* * **
107103 AAAAGTCTCCCGAGTTTAAG-CGAATGGGTAGACGATT-AACA
1 AAAAGTCTCCCGAGTCTAAGCCG-ATGGGCAGACGATTGATGA
* * * * * * *
107144 AAGGAAGTCTCTCGGGTCTAAGTCAACGGGCAAACGATTGATAA
1 AA--AAGTCTCCCGAGTCTAAGCCGATGGGCAGACGATTGATGA
* * * * * * **
107188 AAGAAGTCTTCTGGGTC-AGAGCTGACGGGCAGACAATT-AACA
1 AA-AAGTCTCCCGAGTCTA-AGCCGATGGGCAGACGATTGATGA
* * * * *
107230 AAGTAAGTCTCTCGGGTCTAAACC-ATTGAGCTA-ATGATTGAT-A
1 AA--AAGTCTCCCGAGTCTAAGCCGA-TGGGC-AGACGATTGATGA
* * * * * * *
107273 TAAAAGTCTCCCAAGTCTAAGTCAACGGGCAAAAGATTGA-CA
1 -AAAAGTCTCCCGAGTCTAAGCCGATGGGCAGACGATTGATGA
* ** * * *
107315 AATGAAGTTTCTTGCA-TCTAAGCTGATGGGCAAACGATTGATGG
1 AA--AAGTCTCCCG-AGTCTAAGCCGATGGGCAGACGATTGATGA
* * * * *
107359 AAAAGTCTCTC-AGGTTTAGGCCTACGGGC--A--A--G--G-
1 AAAAGTCTCCCGA-GTCTAAGCCGATGGGCAGACGATTGATGA
* * * *
107392 --AAGTCTCCC-AGGTCCAAGCCGATAGGTAGACGATTGATGG
1 AAAAGTCTCCCGA-GTCTAAGCCGATGGGCAGACGATTGATGA
* ** ** * * * *
107432 AAAAGTCTCTCGAGTCCGAGCTAACGGGTAGATGATTGA-CA
1 AAAAGTCTCCCGAGTCTAAGCCGATGGGCAGACGATTGATGA
* * ** * *
107473 AATGAAGTGT-CCTAGGTCTAAATCGATGGGCAAACGATTGATGG
1 AA--AAGTCTCCCGA-GTCTAAGCCGATGGGCAGACGATTGATGA
* * * * * *
107517 AAAAGTCTCTCCG-GTCTGAGCCAACGGGTAGA-AACTGATGA
1 AAAAGTCTC-CCGAGTCTAAGCCGATGGGCAGACGATTGATGA
* * * * * * *
107558 AGCAAGTCTCTC-AGGTCTAAGCCGACGGTCAAATGAATGATG-
1 A-AAAGTCTCCCGA-GTCTAAGCCGATGGGCAGACGATTGATGA
* * ** * **
107600 GAAAGTCTCTC-AGCTCTAAGCCGACAGGCAGACGAATGACAA
1 AAAAGTCTCCCGAG-TCTAAGCCGATGGGCAGACGATTGATGA
* * ** * * * *
107642 AGAAAGTCTCTCG-GTTCTAAGCTGGCGGGTAAATGATTGATGG
1 A-AAAGTCTCCCGAG-TCTAAGCCGATGGGCAGACGATTGATGA
* * * *
107685 AAAAGTCTCCCGAGTCTAAGCTGATGGGCAGACAATTGACGG
1 AAAAGTCTCCCGAGTCTAAGCCGATGGGCAGACGATTGATGA
** * * *
107727 AAAAGTCT-CTTAGCTCTAAGCTGACGGGCAGACAATTGATGA
1 AAAAGTCTCCCGAG-TCTAAGCCGATGGGCAGACGATTGATGA
* * * * *
107769 AAAAGTCTTCAGAGACTAAGCTGATGAGCAGACGATTGA-GAAA
1 AAAAGTCTCCCGAGTCTAAGCCGATGGGCAGACGATTGATG--A
* * * * * *
107812 GGAAAAGTCTCTCAAGTCTAAGCTGACGGGCAGCCGATCGATGA
1 --AAAAGTCTCCCGAGTCTAAGCCGATGGGCAGACGATTGATGA
* *
107856 AAAAGTCTCTCGAGTCTAAGCCGATGGGCAGACGATTGACAGA
1 AAAAGTCTCCCGAGTCTAAGCCGATGGGCAGACGATTGA-TGA
** *
107899 AGAAA-TCTCCTAAGTCTAAG-C--T-GACAG--G--T-A-G-
1 A-AAAGTCTCCCGAGTCTAAGCCGATGGGCAGACGATTGATGA
* * * * * * *
107930 ACAAGTCTCTCGGGTCTAAGCCGATAGGTAGATGATTGGTGA
1 AAAAGTCTCCCGAGTCTAAGCCGATGGGCAGACGATTGATGA
** * * * *
107972 AAAAGTCT-CTTAGGTTTAAGCCGATGGGTAGATGGTTGAT-A
1 AAAAGTCTCCCGA-GTCTAAGCCGATGGGCAGACGATTGATGA
* * **
108013 AAGGAACTCT-CCTAGGTCTAAGCCGACAGGCAGACGATTGATGA
1 AA--AAGTCTCCCGA-GTCTAAGCCGATGGGCAGACGATTGATGA
* * * *** * * * *
108057 AAAAGTCTCTCGGGTCTAAGTCGACAAGTAAATGATTGATAA
1 AAAAGTCTCCCGAGTCTAAGCCGATGGGCAGACGATTGATGA
* * * * **
108099 AGAAAGTGTCCCAAGTCTAAGCCGAAGGGCAGATGAAAGATGA
1 A-AAAGTCTCCCGAGTCTAAGCCGATGGGCAGACGATTGATGA
* * * * * *
108142 AGGAAGTCT-CCTAGGTCTAAGCCGATGGGTAGATGAATGA-CA
1 A-AAAGTCTCCCGA-GTCTAAGCCGATGGGCAGACGATTGATGA
108184 AAAGAGTCTCCCG
1 AAA-AGTCTCCCG
108197 GGTTTGAGAC
Statistics
Matches: 3745, Mismatches: 1174, Indels: 571
0.68 0.21 0.10
Matches are distributed among these distances:
30 2 0.00
31 31 0.01
32 2 0.00
33 1 0.00
34 3 0.00
35 5 0.00
36 1 0.00
37 3 0.00
38 1 0.00
39 43 0.01
40 36 0.01
41 335 0.09
42 1616 0.43
43 1407 0.38
44 160 0.04
45 91 0.02
46 8 0.00
ACGTcount: A:0.34, C:0.18, G:0.26, T:0.23
Consensus pattern (42 bp):
AAAAGTCTCCCGAGTCTAAGCCGATGGGCAGACGATTGATGA
Found at i:103979 original size:43 final size:43
Alignment explanation
Indices: 103882--104071 Score: 134
Period size: 43 Copynumber: 4.4 Consensus size: 43
103872 ACGATTGATG
* * * *
103882 AAAAAGTCTCCCGAGTCTGAGCCGATGGGCAGACGATTGATAA
1 AAAAAGTCTCCTGGGTCTGAGCCGATGGGCAGACAATAGATAA
* * * * * * *
103925 AAGACGCCTCCTGGGTCTAAGTCGATGGGTAGATAATAGATAA
1 AAAAAGTCTCCTGGGTCTGAGCCGATGGGCAGACAATAGATAA
* * *
103968 AAAAAGTCTCCTAGGTCTGAGCCGATGAGCAGACAATTA-ACAA
1 AAAAAGTCTCCTGGGTCTGAGCCGATGGGCAGACAA-TAGATAA
* * * * *
104011 AAGAAGTCT-CTCGGGTCTAAGCCAATAGGCAGA-AGATTGATAA
1 AAAAAGTCTCCT-GGGTCTGAGCCGATGGGCAGACA-ATAGATAA
** *
104054 TGAAAGTCTCCCGGGTCT
1 AAAAAGTCTCCTGGGTCT
104072 AAGCAGACGA
Statistics
Matches: 109, Mismatches: 33, Indels: 10
0.72 0.22 0.07
Matches are distributed among these distances:
42 4 0.04
43 102 0.94
44 3 0.03
ACGTcount: A:0.34, C:0.19, G:0.26, T:0.21
Consensus pattern (43 bp):
AAAAAGTCTCCTGGGTCTGAGCCGATGGGCAGACAATAGATAA
Found at i:104072 original size:43 final size:44
Alignment explanation
Indices: 104014--104118 Score: 119
Period size: 44 Copynumber: 2.4 Consensus size: 44
104004 TTAACAAAAG
* *
104014 AAGTCTCTCGGGTCTAAGCCA-A-TAGGCAGAA-GATTGATA-ATGA
1 AAGTCTCCCGGGTCTAAG-CAGACGAGGCA-AATGATTGATATA-GA
*
104057 AAGTCTCCCGGGTCTAAGCAGACGAGGCAAATGATTGATATAGG
1 AAGTCTCCCGGGTCTAAGCAGACGAGGCAAATGATTGATATAGA
*
104101 AAGTCTCCCAGGTCTAAG
1 AAGTCTCCCGGGTCTAAG
104119 GCATCAGGTA
Statistics
Matches: 54, Mismatches: 4, Indels: 7
0.83 0.06 0.11
Matches are distributed among these distances:
42 2 0.04
43 20 0.37
44 31 0.57
45 1 0.02
ACGTcount: A:0.32, C:0.19, G:0.27, T:0.22
Consensus pattern (44 bp):
AAGTCTCCCGGGTCTAAGCAGACGAGGCAAATGATTGATATAGA
Found at i:105102 original size:43 final size:43
Alignment explanation
Indices: 105055--105191 Score: 120
Period size: 43 Copynumber: 3.2 Consensus size: 43
105045 GAGTCGACAA
* **
105055 GCAAATGATAGATAAAGGAAGTCTCTCAGTTCTAAGCTTATAG
1 GCAAATGATAGATAAAGGAAGTCTCTCAGCTCTAAGCCAATAG
* *
105098 GCAAATGA-ATGAT---GGAAATGTCTCTTAGGTCTAAGCCAATAG
1 GCAAATGATA-GATAAAGG-AA-GTCTCTCAGCTCTAAGCCAATAG
* * * * *
105140 GCAAACGATTGAAAAAGGAAATCTCTCTGCTCTAAGCCAATAG
1 GCAAATGATAGATAAAGGAAGTCTCTCAGCTCTAAGCCAATAG
*
105183 GCAGATGAT
1 GCAAATGAT
105192 TGATGGAAAA
Statistics
Matches: 74, Mismatches: 13, Indels: 14
0.73 0.13 0.14
Matches are distributed among these distances:
40 2 0.03
41 2 0.03
42 29 0.39
43 37 0.50
44 2 0.03
45 2 0.03
ACGTcount: A:0.37, C:0.16, G:0.22, T:0.25
Consensus pattern (43 bp):
GCAAATGATAGATAAAGGAAGTCTCTCAGCTCTAAGCCAATAG
Found at i:105235 original size:85 final size:85
Alignment explanation
Indices: 105055--105236 Score: 204
Period size: 85 Copynumber: 2.1 Consensus size: 85
105045 GAGTCGACAA
* * * * ** *
105055 GCAAATGATAGATAAAGGAAGTCTCTCAGTTCTAAGCTTATAGGCAAATGAATGATGGAAATGTC
1 GCAAATGATTGAAAAAGGAAATCTCTCAGCTCTAAGCCAATAGGCAAATGAATGATGGAAAAGTC
*
105120 TCTTAGGTCTAAGCCAATAG
66 TCTGAGGTCTAAGCCAATAG
* * * *
105140 GCAAACGATTGAAAAAGGAAATCTCTCTGCTCTAAGCCAATAGGCAGATGATTGATGGAAAAGTC
1 GCAAATGATTGAAAAAGGAAATCTCTCAGCTCTAAGCCAATAGGCAAATGAATGATGGAAAAGTC
* *
105205 TCTCGA-GTCTAAGTCGATAG
66 TCT-GAGGTCTAAGCCAATAG
* *
105225 GTAGATGATTGA
1 GCAAATGATTGA
105237 TGGAAAAGTC
Statistics
Matches: 79, Mismatches: 17, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
85 78 0.99
86 1 0.01
ACGTcount: A:0.36, C:0.15, G:0.24, T:0.26
Consensus pattern (85 bp):
GCAAATGATTGAAAAAGGAAATCTCTCAGCTCTAAGCCAATAGGCAAATGAATGATGGAAAAGTC
TCTGAGGTCTAAGCCAATAG
Found at i:105578 original size:85 final size:85
Alignment explanation
Indices: 105190--105614 Score: 245
Period size: 85 Copynumber: 5.0 Consensus size: 85
105180 TAGGCAGATG
* * * * *** **
105190 ATTGATGGAAAAGTCTCTCGAGTCTAAGTCGAT-AGGTAGATGATTGATGGAA-AAGTCTCTTAG
1 ATTGATGGAAAAGTCTCTCGGGTCTAACT-GATGAAGCAGATGATTGACAAAAGAAGTCTCTCGG
* ** *
105253 GTCTAAGCTGACGGGCCGACG
65 GTCTAAGCTGACAGGTAGACA
* * * * * * * * * * *
105274 ATTGATGAAAAAGTCTCCCGGGACCAAGCTGATG-GGCAAACGATTGACAAAGGAAAAATCCCCC
1 ATTGATGGAAAAGTCTCTCGGGTCTAA-CTGATGAAGCAGATGATTGACAAA--AGAAGTCTCTC
** * * * * *
105338 AAGTCTAAGCCGACGGGCAAACG
63 GGGTCTAAGCTGACAGGTAGACA
* * *
105361 ATTGATGGAAAAATCTCTCGGGTACTAAATCGAT-AAGCAGATGATTGACAAAAGAAGTCTCCCG
1 ATTGATGGAAAAGTCTCTCGGGT-CTAACT-GATGAAGCAGATGATTGACAAAAGAAGTCTCTCG
* * *
105425 GGTCTAAGTCT-A-TGAGCAAACA
64 GGTCTAAG-CTGACAG-GTAGACA
* * * *
105447 ATTGATGGAGAAGTCTTTTGGGTCTGAACTGA-GAGGCAGATGATTGACAAAAGAAGTCTCTCGG
1 ATTGATGGAAAAGTCTCTCGGGTCT-AACTGATGAAGCAGATGATTGACAAAAGAAGTCTCTCGG
105511 GTCTAAGCTGACAGGTAGACA
65 GTCTAAGCTGACAGGTAGACA
* ** ** * *
105532 ATTGATGGAAAAGTCTCTCAGGTCTAAGCTGATGAAG-AGACAATTGACAATGGAAGTTTCTCGA
1 ATTGATGGAAAAGTCTCTCGGGTCTAA-CTGATGAAGCAGATGATTGACAAAAGAAGTCTCTCGG
* * *
105596 GTTTGAGCAGACAGGTAGA
65 GTCTAAGCTGACAGGTAGA
105615 TGATAGATGA
Statistics
Matches: 264, Mismatches: 61, Indels: 31
0.74 0.17 0.09
Matches are distributed among these distances:
84 40 0.15
85 110 0.42
86 49 0.19
87 45 0.17
88 20 0.08
ACGTcount: A:0.33, C:0.17, G:0.27, T:0.23
Consensus pattern (85 bp):
ATTGATGGAAAAGTCTCTCGGGTCTAACTGATGAAGCAGATGATTGACAAAAGAAGTCTCTCGGG
TCTAAGCTGACAGGTAGACA
Found at i:105698 original size:85 final size:84
Alignment explanation
Indices: 105608--105814 Score: 206
Period size: 85 Copynumber: 2.5 Consensus size: 84
105598 TTGAGCAGAC
* ** * *
105608 AGGTAGATGATAGATGAAGGAAGTCTCCTGAGTCTAAGCT-AAGGAGCAGACGAATGATGGAAAA
1 AGGTAGATGATTGATGAAAAAAGTCTCCCGAGTCTAAGCTGAAGG-GAAGACGAATGATGGAAAA
*
105672 GTCT-TCTGGGTCTAAACTGAT
65 GTCTCTC-AGGTCTAAACT-AT
* * * * *
105693 AGGTAGACGATTGACT-AAAAAAGTCTCCCGATTCTAAGCTGATGGGAAGATGATTGATGGAAAA
1 AGGTAGATGATTGA-TGAAAAAAGTCTCCCGAGTCTAAGCTGAAGGGAAGACGAATGATGGAAAA
105757 GTCTCTCAGGTCTAAACTAT
65 GTCTCTCAGGTCTAAACTAT
* * * * *
105777 GGGTAGTTGATTGATG-GAAAAGTTTCCCAAGTCTAAGC
1 AGGTAGATGATTGATGAAAAAAGTCTCCCGAGTCTAAGC
105815 CGATGGGTAG
Statistics
Matches: 100, Mismatches: 18, Indels: 10
0.78 0.14 0.08
Matches are distributed among these distances:
83 19 0.19
84 13 0.13
85 62 0.62
86 6 0.06
ACGTcount: A:0.33, C:0.14, G:0.27, T:0.26
Consensus pattern (84 bp):
AGGTAGATGATTGATGAAAAAAGTCTCCCGAGTCTAAGCTGAAGGGAAGACGAATGATGGAAAAG
TCTCTCAGGTCTAAACTAT
Found at i:105788 original size:41 final size:42
Alignment explanation
Indices: 105662--105903 Score: 168
Period size: 41 Copynumber: 5.7 Consensus size: 42
105652 AGCAGACGAA
* * *
105662 TGATGGAAAAGTCT-TCTGGGTCTAAACTGATAGGTAGACGAT
1 TGATGGAAAAGTCTCTC-AGGTCTAAACTGATGGGTAGATGAT
** * * * *
105704 TGACTAAAAAAGTCTC-CCGATTCTAAGCTGATGGGAAGATGAT
1 TGA-TGGAAAAGTCTCTCAG-GTCTAAACTGATGGGTAGATGAT
*
105747 TGATGGAAAAGTCTCTCAGGTCTAAACT-ATGGGTAGTTGAT
1 TGATGGAAAAGTCTCTCAGGTCTAAACTGATGGGTAGATGAT
* * * * *
105788 TGATGGAAAAGTTTCCCAAGTCTAAGCCGATGGGTAGATGAT
1 TGATGGAAAAGTCTCTCAGGTCTAAACTGATGGGTAGATGAT
* * * * * * * *
105830 TGACAAAGGAAAAGTCTCAC-GGTTTAAGCCGACGAGCAGATGAT
1 TG---ATGGAAAAGTCTCTCAGGTCTAAACTGATGGGTAGATGAT
* * *
105874 TGATGGAAACGTCTCCCAGGTCTAAGCTGA
1 TGATGGAAAAGTCTCTCAGGTCTAAACTGA
105904 CAAGCAAACG
Statistics
Matches: 157, Mismatches: 34, Indels: 18
0.75 0.16 0.09
Matches are distributed among these distances:
41 46 0.29
42 45 0.29
43 33 0.21
44 21 0.13
45 12 0.08
ACGTcount: A:0.32, C:0.16, G:0.27, T:0.26
Consensus pattern (42 bp):
TGATGGAAAAGTCTCTCAGGTCTAAACTGATGGGTAGATGAT
Found at i:105847 original size:213 final size:213
Alignment explanation
Indices: 105399--105847 Score: 457
Period size: 213 Copynumber: 2.1 Consensus size: 213
105389 ATCGATAAGC
* * * *
105399 AGATGATTGACAAAAG-AAGTCTCCCGGGTCTAAGTCTATGAGCAAACAATTGATGGAGAAGTCT
1 AGATGATTGACAAAGGAAAGTCTCCCGAGTCTAAGTCTAGGAGCAAACAATTGATGGAAAAGTCT
* * * * * *
105463 TTTGGGTCTGAACTGAGAGGCAGATGATTGACAAAAGAAGTCTCTCGGGTCTAAGCTGACAGGTA
66 TCTGGGTCTAAACTGAGAGGCAGACGATTGACAAAAGAAGTCTCCCGAGTCTAAGCTGACAGGAA
* *
105528 GACAATTGATGGAAAAGTCTCTCAGGTCTAAGCTGATGAAGAGACAATTGACAATGGAAGTTTCT
131 GACAATTGATGGAAAAGTCTCTCAGGTCTAAACTGATG-AGAGACAATTGACAATGGAAGTTTCC
* * *
105593 CGAGTTTGAGCAGACAGGT
195 CAAGTCTAAGCAGACAGGT
* ** * *
105612 AGATGATAGATGAAGG-AAGTCTCCTGAGTCTAAG-CTAAGGAGCAGACGAA-TGATGGAAAAGT
1 AGATGATTGACAAAGGAAAGTCTCCCGAGTCTAAGTCT-AGGAGCAAAC-AATTGATGGAAAAGT
* * * **
105674 CTTCTGGGTCTAAACTGATAGGTAGACGATTGACTAAAA-AAGTCTCCCGATTCTAAGCTGATGG
64 CTTCTGGGTCTAAACTGAGAGGCAGACGATTGAC-AAAAGAAGTCTCCCGAGTCTAAGCTGACAG
** * * **
105738 GAAGATGATTGATGGAAAAGTCTCTCAGGTCTAAACT-ATG-G-G-TAGTTGATTGATGGAAAAG
128 GAAGACAATTGATGGAAAAGTCTCTCAGGTCTAAACTGATGAGAGACAATTGA-CAATGG--AAG
* **
105799 TTTCCCAAGTCTAAGCCGATGGGT
190 TTTCCCAAGTCTAAGCAGACAGGT
105823 AGATGATTGACAAAGGAAAAGTCTC
1 AGATGATTGACAAAGG-AAAGTCTC
105848 ACGGTTTAAG
Statistics
Matches: 191, Mismatches: 37, Indels: 16
0.78 0.15 0.07
Matches are distributed among these distances:
208 5 0.03
209 5 0.03
210 1 0.01
211 33 0.17
212 5 0.03
213 136 0.71
214 6 0.03
ACGTcount: A:0.33, C:0.14, G:0.27, T:0.25
Consensus pattern (213 bp):
AGATGATTGACAAAGGAAAGTCTCCCGAGTCTAAGTCTAGGAGCAAACAATTGATGGAAAAGTCT
TCTGGGTCTAAACTGAGAGGCAGACGATTGACAAAAGAAGTCTCCCGAGTCTAAGCTGACAGGAA
GACAATTGATGGAAAAGTCTCTCAGGTCTAAACTGATGAGAGACAATTGACAATGGAAGTTTCCC
AAGTCTAAGCAGACAGGT
Found at i:106563 original size:43 final size:43
Alignment explanation
Indices: 106357--106612 Score: 157
Period size: 43 Copynumber: 6.0 Consensus size: 43
106347 AGGTTACCCT
* * *
106357 GGTCTGAGCCGATGGGTAGACGATTGAGAAAAGAAGTCT-CTC
1 GGTCTGAGCCGATGAGCAGACGATTGACAAAAGAAGTCTCCTC
* * * * * * ** *
106399 GAGTCTAAGCTGACGGGTAGACAATTGATGAAA-AAGTCT-TTC
1 G-GTCTGAGCCGATGAGCAGACGATTGACAAAAGAAGTCTCCTC
* * * * * *
106441 AGGTTTGAG-CGACGAGCAGACGATTGACAAAGGGCA-TCTCTTG
1 -GGTCTGAGCCGATGAGCAGACGATTGACAAA-AGAAGTCTCCTC
* * * *
106484 GGTCTAAGCCGATG-GCAGACGATAGATAAAAAAAGTCTCCTC
1 GGTCTGAGCCGATGAGCAGACGATTGACAAAAGAAGTCTCCTC
* *
106526 GGTCTGAGCCGATGAGCAGACAATTGACAAAAGAAGTCTCCTA
1 GGTCTGAGCCGATGAGCAGACGATTGACAAAAGAAGTCTCCTC
* * * * * * *
106569 GGTCTAAACCAATGGGCAGATGATTGATAAAGGAAGTCT-CTC
1 GGTCTGAGCCGATGAGCAGACGATTGACAAAAGAAGTCTCCTC
106611 GG
1 GG
106613 GTTTAAGCAG
Statistics
Matches: 163, Mismatches: 43, Indels: 16
0.73 0.19 0.07
Matches are distributed among these distances:
41 17 0.10
42 59 0.36
43 87 0.53
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (43 bp):
GGTCTGAGCCGATGAGCAGACGATTGACAAAAGAAGTCTCCTC
Found at i:106827 original size:43 final size:42
Alignment explanation
Indices: 106781--106959 Score: 200
Period size: 43 Copynumber: 4.2 Consensus size: 42
106771 GAGTCTATCG
** * *
106781 GGTCTAAGCTGATATGCAGATGATTGACAAAGAAAGTTTCCTG
1 GGTCTAAGCTGATGGGCAGATGATTGA-AAAGAAAGTCTCCTA
* * * * *
106824 GGTCTAAGTTGATGGGCAGACGAAT-AAAGGAAAACTCTCCTA
1 GGTCTAAGCTGATGGGCAGATGATTGAAAAG-AAAGTCTCCTA
106866 GGTCTAAGCTGATGGGCAGATGATTGATAAAGAAAGTCTCCTA
1 GGTCTAAGCTGATGGGCAGATGATTGA-AAAGAAAGTCTCCTA
* **
106909 GGTCTAATCTGATGGGCAGATGATTG-ATGGAAAAGTCTCCTA
1 GGTCTAAGCTGATGGGCAGATGATTGAAAAG-AAAGTCTCCTA
106951 GGTCTAAGC
1 GGTCTAAGC
106960 CGACAGGCAA
Statistics
Matches: 114, Mismatches: 18, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
41 5 0.04
42 50 0.44
43 56 0.49
44 3 0.03
ACGTcount: A:0.32, C:0.15, G:0.27, T:0.26
Consensus pattern (42 bp):
GGTCTAAGCTGATGGGCAGATGATTGAAAAGAAAGTCTCCTA
Found at i:106870 original size:85 final size:85
Alignment explanation
Indices: 106781--106968 Score: 252
Period size: 85 Copynumber: 2.2 Consensus size: 85
106771 GAGTCTATCG
* * *
106781 GGTCTAAGCTGATATGCAGATGATTGACAAAGAAAGTTTCCTGGGTCTAAGT-TGATGGGCAGAC
1 GGTCTAAGCTGATAGGCAGATGATTGACAAAGAAAGTCTCCTAGGTCTAA-TCTGATGGGCAGAC
106845 GAATAAAGGAAAACTCTCCTA
65 GAATAAAGGAAAACTCTCCTA
* * *
106866 GGTCTAAGCTGATGGGCAGATGATTGATAAAGAAAGTCTCCTAGGTCTAATCTGATGGGCAGATG
1 GGTCTAAGCTGATAGGCAGATGATTGACAAAGAAAGTCTCCTAGGTCTAATCTGATGGGCAGACG
* * * *
106931 ATTGATGGAAAAGTCTCCTA
66 AATAAAGGAAAACTCTCCTA
* *
106951 GGTCTAAGCCGACAGGCA
1 GGTCTAAGCTGATAGGCA
106969 ACAATTGATG
Statistics
Matches: 89, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
84 1 0.01
85 88 0.99
ACGTcount: A:0.32, C:0.16, G:0.28, T:0.24
Consensus pattern (85 bp):
GGTCTAAGCTGATAGGCAGATGATTGACAAAGAAAGTCTCCTAGGTCTAATCTGATGGGCAGACG
AATAAAGGAAAACTCTCCTA
Found at i:107181 original size:43 final size:43
Alignment explanation
Indices: 107134--107250 Score: 123
Period size: 43 Copynumber: 2.7 Consensus size: 43
107124 GAATGGGTAG
107134 ACGATTAACAAAGGAAGTCTCTCGGGTCTAAG-TCAACGGGCAA
1 ACGATTAACAAAGGAAGTCTCTCGGGTCTAAGCT-AACGGGCAA
* * * * *
107177 ACGATTGATAAAAGAAGTCT-TCTGGGTC-AGAGCTGACGGGCAG
1 ACGATTAACAAAGGAAGTCTCTC-GGGTCTA-AGCTAACGGGCAA
* *
107220 ACAATTAACAAAGTAAGTCTCTCGGGTCTAA
1 ACGATTAACAAAGGAAGTCTCTCGGGTCTAA
107251 ACCATTGAGC
Statistics
Matches: 59, Mismatches: 10, Indels: 10
0.75 0.13 0.13
Matches are distributed among these distances:
42 3 0.05
43 52 0.88
44 4 0.07
ACGTcount: A:0.34, C:0.19, G:0.26, T:0.21
Consensus pattern (43 bp):
ACGATTAACAAAGGAAGTCTCTCGGGTCTAAGCTAACGGGCAA
Found at i:107611 original size:41 final size:42
Alignment explanation
Indices: 107561--107693 Score: 121
Period size: 41 Copynumber: 3.2 Consensus size: 42
107551 CTGATGAAGC
107561 AAGTCTCTCAGGTCTAAGCCGAC-GGTCAAATGAATGATGGA
1 AAGTCTCTCAGGTCTAAGCCGACAGGTCAAATGAATGATGGA
* * * **
107602 AAGTCTCTCAGCTCTAAGCCGACAGG-CAGACGAATGACAAAGA
1 AAGTCTCTCAGGTCTAAGCCGACAGGTCAAATGAATG--ATGGA
* * * *
107645 AAGTCTCTC-GGTTCTAAGCTGGCGGGT-AAATGATTGATGGAA
1 AAGTCTCTCAGG-TCTAAGCCGACAGGTCAAATGAATGATGG-A
107687 AAGTCTC
1 AAGTCTC
107694 CCGAGTCTAA
Statistics
Matches: 72, Mismatches: 14, Indels: 11
0.74 0.14 0.11
Matches are distributed among these distances:
41 32 0.44
42 11 0.15
43 29 0.40
ACGTcount: A:0.32, C:0.20, G:0.26, T:0.22
Consensus pattern (42 bp):
AAGTCTCTCAGGTCTAAGCCGACAGGTCAAATGAATGATGGA
Found at i:107855 original size:87 final size:86
Alignment explanation
Indices: 107680--107933 Score: 272
Period size: 87 Copynumber: 3.0 Consensus size: 86
107670 GTAAATGATT
* * * * *
107680 GATGGAAAAGTCTCCCGAGTCTAAGCTGATGGGCAGACAATT--G-ACGGAAAAGTCTCT-TAGC
1 GATGAAAAAGTCT-TCGAGTCTAAGCTGATGGGCAGACGATTGAGAAAGGAAAAGTCTCTCAAG-
*
107741 TCTAAGCTGACGGGCAGACAATT
64 TCTAAGCTGACGGGCAGACAATC
* *
107764 GATGAAAAAGTCTTCAGAGACTAAGCTGATGAGCAGACGATTGAGAAAGGAAAAGTCTCTCAAGT
1 GATGAAAAAGTCTTC-GAGTCTAAGCTGATGGGCAGACGATTGAGAAAGGAAAAGTCTCTCAAGT
* *
107829 CTAAGCTGACGGGCAGCCGATC
65 CTAAGCTGACGGGCAGACAATC
* *
107851 GATGAAAAAGTCTCTCGAGTCTAAGCCGATGGGCAGACGATTGACAGAA-G-AAA-TCTC-CTAA
1 GATGAAAAAGTCT-TCGAGTCTAAGCTGATGGGCAGACGATTGAGA-AAGGAAAAGTCTCTC-AA
* *
107912 GTCTAAGCTGACAGGTAGACAA
63 GTCTAAGCTGACGGGCAGACAA
107934 GTCTCTCGGG
Statistics
Matches: 144, Mismatches: 18, Indels: 15
0.81 0.10 0.08
Matches are distributed among these distances:
83 1 0.01
84 36 0.25
85 24 0.17
86 4 0.03
87 73 0.51
88 6 0.04
ACGTcount: A:0.34, C:0.19, G:0.27, T:0.20
Consensus pattern (86 bp):
GATGAAAAAGTCTTCGAGTCTAAGCTGATGGGCAGACGATTGAGAAAGGAAAAGTCTCTCAAGTC
TAAGCTGACGGGCAGACAATC
Found at i:108096 original size:85 final size:84
Alignment explanation
Indices: 107942--108166 Score: 209
Period size: 85 Copynumber: 2.6 Consensus size: 84
107932 AAGTCTCTCG
* * * * * *** * *
107942 GGTCTAAGCCGATAGGTAGATGATTGGTGAAAAAGTCTCTTAGGTTTAAGCCGATGGGTAGATGG
1 GGTCTAAGCCGA-AGGCAGACGATTGATGAAAAAGTCTCTCAGGTCTAAGCCGACAAGTAAATGA
* *
108007 TTGATAAAGGAACTCTCCTA
65 TTGATAAAGAAACTCTCCCA
* *
108027 GGTCTAAGCCGACAGGCAGACGATTGATGAAAAAGTCTCTCGGGTCTAAGTCGACAAGTAAATGA
1 GGTCTAAGCCGA-AGGCAGACGATTGATGAAAAAGTCTCTCAGGTCTAAGCCGACAAGTAAATGA
* *
108092 TTGATAAAGAAAGTGTCCCA
65 TTGATAAAGAAACTCTCCCA
* * ** *
108112 AGTCTAAGCCGAAGGGCAGATGAAAGATGAAGGAAGTCTC-CTAGGTCTAAGCCGA
1 GGTCTAAGCCGAA-GGCAGACGATTGATGAA-AAAGTCTCTC-AGGTCTAAGCCGA
108167 TGGGTAGATG
Statistics
Matches: 113, Mismatches: 24, Indels: 5
0.80 0.17 0.04
Matches are distributed among these distances:
84 1 0.01
85 94 0.83
86 18 0.16
ACGTcount: A:0.33, C:0.16, G:0.28, T:0.23
Consensus pattern (84 bp):
GGTCTAAGCCGAAGGCAGACGATTGATGAAAAAGTCTCTCAGGTCTAAGCCGACAAGTAAATGAT
TGATAAAGAAACTCTCCCA
Found at i:108159 original size:128 final size:127
Alignment explanation
Indices: 107932--108166 Score: 299
Period size: 128 Copynumber: 1.8 Consensus size: 127
107922 ACAGGTAGAC
* * * * * ** * * *
107932 AAGTCTCTCGGGTCTAAGCCGATAGGTAGATGATTGGTGAAAAAGTCTCTTAGGTTTAAGCCGAT
1 AAGTCTCTCGGGTCTAAGCCGACAAGTAAATGATTGATAAAAAAGTCTCCCAAGTCTAAGCCGAA
* ***
107997 GGGTAGATGGTTGATAAAGGAACTCTCCTAGGTCTAAGCCGACAGGCAGACGATTGATGAAA
66 GGGCAGATGAAAGATAAAGGAACTCTCCTAGGTCTAAGCCGACAGGCAGACGATTGATGAAA
* *
108059 AAGTCTCTCGGGTCTAAGTCGACAAGTAAATGATTGATAAAGAAAGTGTCCCAAGTCTAAGCCGA
1 AAGTCTCTCGGGTCTAAGCCGACAAGTAAATGATTGATAAA-AAAGTCTCCCAAGTCTAAGCCGA
* *
108124 AGGGCAGATGAAAGATGAAGGAAGTCTCCTAGGTCTAAGCCGA
65 AGGGCAGATGAAAGATAAAGGAACTCTCCTAGGTCTAAGCCGA
108167 TGGGTAGATG
Statistics
Matches: 89, Mismatches: 18, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
127 35 0.39
128 54 0.61
ACGTcount: A:0.32, C:0.17, G:0.28, T:0.23
Consensus pattern (127 bp):
AAGTCTCTCGGGTCTAAGCCGACAAGTAAATGATTGATAAAAAAGTCTCCCAAGTCTAAGCCGAA
GGGCAGATGAAAGATAAAGGAACTCTCCTAGGTCTAAGCCGACAGGCAGACGATTGATGAAA
Found at i:108178 original size:43 final size:43
Alignment explanation
Indices: 107942--108177 Score: 201
Period size: 43 Copynumber: 5.5 Consensus size: 43
107932 AAGTCTCTCG
* *
107942 GGTCTAAGCCGATAGGTAGATGATTGGTGAA-AAAGTCTCTTA
1 GGTCTAAGCCGATAGGTAGATGATTGATGAAGAAAGTCTCCTA
* * * * * *
107984 GGTTTAAGCCGATGGGTAGATGGTTGATAAAGGAACTCTCCTA
1 GGTCTAAGCCGATAGGTAGATGATTGATGAAGAAAGTCTCCTA
* * * *
108027 GGTCTAAGCCGACAGGCAGACGATTGATGAA-AAAGTCT-CTCG
1 GGTCTAAGCCGATAGGTAGATGATTGATGAAGAAAGTCTCCT-A
* * * * * * *
108069 GGTCTAAGTCGACAAGTAAATGATTGATAAAGAAAGTGTCCCA
1 GGTCTAAGCCGATAGGTAGATGATTGATGAAGAAAGTCTCCTA
* * ** *
108112 AGTCTAAGCCGA-AGGGCAGATGAAAGATGAAGGAAGTCTCCTA
1 GGTCTAAGCCGATA-GGTAGATGATTGATGAAGAAAGTCTCCTA
*
108155 GGTCTAAGCCGATGGGTAGATGA
1 GGTCTAAGCCGATAGGTAGATGA
108178 ATGACAAAAG
Statistics
Matches: 147, Mismatches: 41, Indels: 11
0.74 0.21 0.06
Matches are distributed among these distances:
41 2 0.01
42 57 0.39
43 87 0.59
44 1 0.01
ACGTcount: A:0.33, C:0.15, G:0.29, T:0.23
Consensus pattern (43 bp):
GGTCTAAGCCGATAGGTAGATGATTGATGAAGAAAGTCTCCTA
Found at i:108192 original size:128 final size:127
Alignment explanation
Indices: 107932--108199 Score: 286
Period size: 128 Copynumber: 2.1 Consensus size: 127
107922 ACAGGTAGAC
* * * * * ** * * *
107932 AAGTCTCTCGGGTCTAAGCCGATAGGTAGATGATTGGTGAAAAAGTCTCTTAGGTTTAAGCCGAT
1 AAGTCTCTCGGGTCTAAGCCGACAAGTAAATGATTGATAAAAAAGTCTCCCAAGTCTAAGCCGAA
* *** * *
107997 GGGTAGATGGTTGATAAAGGAACTCTCCTAGGTCTAAGCCGACAGGCAGACGATTGATGAAA
66 GGGCAGATGAAAGATAAAGGAACTCTCCTAGGTCTAAGCCGACAGGCAGACGAATGATCAAA
* *
108059 AAGTCTCTCGGGTCTAAGTCGACAAGTAAATGATTGATAAAGAAAGTGTCCCAAGTCTAAGCCGA
1 AAGTCTCTCGGGTCTAAGCCGACAAGTAAATGATTGATAAA-AAAGTCTCCCAAGTCTAAGCCGA
* * ** * *
108124 AGGGCAGATGAAAGATGAAGGAAGTCTCCTAGGTCTAAGCCGATGGGTAGATGAATGA-CAAA
65 AGGGCAGATGAAAGATAAAGGAACTCTCCTAGGTCTAAGCCGACAGGCAGACGAATGATCAAA
*
108186 AGAGTCTCCCGGGT
1 A-AGTCTCTCGGGT
108200 TTGAGACGAC
Statistics
Matches: 114, Mismatches: 25, Indels: 3
0.80 0.18 0.02
Matches are distributed among these distances:
127 39 0.34
128 75 0.66
ACGTcount: A:0.32, C:0.16, G:0.29, T:0.23
Consensus pattern (127 bp):
AAGTCTCTCGGGTCTAAGCCGACAAGTAAATGATTGATAAAAAAGTCTCCCAAGTCTAAGCCGAA
GGGCAGATGAAAGATAAAGGAACTCTCCTAGGTCTAAGCCGACAGGCAGACGAATGATCAAA
Found at i:110767 original size:1 final size:1
Alignment explanation
Indices: 110763--110823 Score: 50
Period size: 1 Copynumber: 61.0 Consensus size: 1
110753 TTTCATTTGA
* * * * * * * *
110763 TTTTTTTTCTTTTTCTTTTTCTTCTTTTTTTGTTTTTGTTTTTGTTTTGTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
110824 GGTTTGTTAT
Statistics
Matches: 44, Mismatches: 16, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
1 44 1.00
ACGTcount: A:0.00, C:0.07, G:0.07, T:0.87
Consensus pattern (1 bp):
T
Found at i:110781 original size:12 final size:11
Alignment explanation
Indices: 110763--110823 Score: 61
Period size: 12 Copynumber: 5.4 Consensus size: 11
110753 TTTCATTTGA
110763 TTTTTTTTCTT
1 TTTTTTTTCTT
110774 TTTCTTTTTCTT
1 TTT-TTTTTCTT
* *
110786 CTTTTTTTGTT
1 TTTTTTTTCTT
*
110797 TTTGTTTTTGTT
1 TTT-TTTTTCTT
110809 TTGTTTTTT-TT
1 TT-TTTTTTCTT
110820 TTTT
1 TTTT
110824 GGTTTGTTAT
Statistics
Matches: 44, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
10 2 0.05
11 16 0.36
12 25 0.57
13 1 0.02
ACGTcount: A:0.00, C:0.07, G:0.07, T:0.87
Consensus pattern (11 bp):
TTTTTTTTCTT
Found at i:110781 original size:15 final size:14
Alignment explanation
Indices: 110749--110823 Score: 62
Period size: 15 Copynumber: 5.3 Consensus size: 14
110739 TCTTTTGTAC
**
110749 TTTTTTTCATTTGAT
1 TTTTTTTC-TTTTTT
110764 TTTTTTTCTTTTTCT
1 TTTTTTTCTTTTT-T
*
110779 TTTTCTTCTTTTTT
1 TTTTTTTCTTTTTT
* * *
110793 TGTTTTTGTTTTTG
1 TTTTTTTCTTTTTT
*
110807 TTTTGTT-TTTTTT
1 TTTTTTTCTTTTTT
110820 TTTT
1 TTTT
110824 GGTTTGTTAT
Statistics
Matches: 49, Mismatches: 10, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
13 9 0.18
14 19 0.39
15 21 0.43
ACGTcount: A:0.03, C:0.07, G:0.07, T:0.84
Consensus pattern (14 bp):
TTTTTTTCTTTTTT
Found at i:110790 original size:23 final size:23
Alignment explanation
Indices: 110764--110823 Score: 66
Period size: 23 Copynumber: 2.6 Consensus size: 23
110754 TTCATTTGAT
110764 TTTTTTTCTTTTTCTTTTTCTTC
1 TTTTTTTCTTTTTCTTTTTCTTC
* * * *
110787 TTTTTTTGTTTTTGTTTTTGTTT
1 TTTTTTTCTTTTTCTTTTTCTTC
*
110810 TGTTTTTTTTTTTT
1 T-TTTTTTCTTTTT
110824 GGTTTGTTAT
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
23 20 0.65
24 11 0.35
ACGTcount: A:0.00, C:0.07, G:0.07, T:0.87
Consensus pattern (23 bp):
TTTTTTTCTTTTTCTTTTTCTTC
Found at i:110798 original size:17 final size:16
Alignment explanation
Indices: 110758--110823 Score: 64
Period size: 17 Copynumber: 4.1 Consensus size: 16
110748 CTTTTTTTCA
*
110758 TTTGATTTTT-TTTCTT
1 TTTG-TTTTTCTTTTTT
*
110774 TTTCTTTTTCTTCTTTT
1 TTTGTTTTTCTT-TTTT
*
110791 TTTGTTTTTGTTTTTGT
1 TTTGTTTTTCTTTTT-T
110808 TTTGTTTTT-TTTTTT
1 TTTGTTTTTCTTTTTT
110823 T
1 T
110824 GGTTTGTTAT
Statistics
Matches: 43, Mismatches: 4, Indels: 7
0.80 0.07 0.13
Matches are distributed among these distances:
15 7 0.16
16 13 0.30
17 23 0.53
ACGTcount: A:0.02, C:0.06, G:0.08, T:0.85
Consensus pattern (16 bp):
TTTGTTTTTCTTTTTT
Found at i:112761 original size:156 final size:156
Alignment explanation
Indices: 112416--112978 Score: 585
Period size: 156 Copynumber: 3.6 Consensus size: 156
112406 TGAAATGGGA
* * * * * ** *
112416 TAGAAATGGGATGAACCTAT-CAAAATGCCTACCTTCGGCATAAAAGCAGACCCAGTGACAACCT
1 TAGAAAAGGGATGAACCTATCCTAAATGCCCACCTTTGACATAAAAGCAGACCTGGTGATAACCT
* * * * * *
112480 AAGAGTTGGTTGTAA-AAGATTACGATAATGCCGC---TAGGTCATACCTTCGACGTAAAAGTA-
66 AGGACTCGATTCTAAGAA-ATTACGAAAATGCC-CTTATAGGT-ATACCTTCGACGTAAAAGTAC
*
112540 CCCA-ATACCCCTAAAAGACTTAAAAAGAC
128 CCCAGA-AACCCTAAAAGACTTAAAAAGAC
* *
112569 TAGAAATGGTGATGAACCTATCCTAAATGCCCACCTTTGACATAAAAGCAGACCTGGTGACAACC
1 TAGAAAAGG-GATGAACCTATCCTAAATGCCCACCTTTGACATAAAAGCAGACCTGGTGATAACC
* *
112634 TAGGACTCGATTCTAGGAAATTACGAAAATGCCCTTATAGGTATACTTTCGACGTAAAAGTACCC
65 TAGGACTCGATTCTAAGAAATTACGAAAATGCCCTTATAGGTATACCTTCGACGTAAAAGTACCC
* * *
112699 CAGCAACCCTAAAGGACCTAAAAAGAC
130 CAGAAACCCTAAAAGACTTAAAAAGAC
* * * * *
112726 TAGAAAAGGGAT-AACCCTATCCTAAATGTCCACCTTCGACATAAAAACGGA-CTCGGTGATGAC
1 TAGAAAAGGGATGAA-CCTATCCTAAATGCCCACCTTTGACATAAAAGCAGACCT-GGTGATAAC
* * * * *
112789 CTAAGAGTCGATTTTAAGAAATTACAAAAATGCCCATATA-G-ATACCTTCGACGTAAAAGTACC
64 CTAGGACTCGATTCTAAGAAATTACGAAAATGCCCTTATAGGTATACCTTCGACGTAAAAGTACC
**
112852 CTGGAAACCCTAAAAGACTTAAAAAGAC
129 CCAGAAACCCTAAAAGACTTAAAAAGAC
* * * * * *
112880 TAGAAAAGAG-TGAACCTACCCTAACTACCCA-CATTCAGCATAAAAGCAGACCTGGTGATAACC
1 TAGAAAAGGGATGAACCTATCCTAAATGCCCACCTTTGA-CATAAAAGCAGACCTGGTGATAACC
* *
112943 TAGGACTCGATTCTAAAAAATTACGAAAATACCCTT
65 TAGGACTCGATTCTAAGAAATTACGAAAATGCCCTT
112979 CGGGGATACC
Statistics
Matches: 342, Mismatches: 55, Indels: 26
0.81 0.13 0.06
Matches are distributed among these distances:
152 3 0.01
153 71 0.21
154 69 0.20
155 65 0.19
156 97 0.28
157 37 0.11
ACGTcount: A:0.39, C:0.23, G:0.17, T:0.21
Consensus pattern (156 bp):
TAGAAAAGGGATGAACCTATCCTAAATGCCCACCTTTGACATAAAAGCAGACCTGGTGATAACCT
AGGACTCGATTCTAAGAAATTACGAAAATGCCCTTATAGGTATACCTTCGACGTAAAAGTACCCC
AGAAACCCTAAAAGACTTAAAAAGAC
Found at i:113679 original size:129 final size:122
Alignment explanation
Indices: 113510--113825 Score: 391
Period size: 123 Copynumber: 2.5 Consensus size: 122
113500 ATACGAAAAA
** * * *
113510 TTTGAAATCTTTTAATACCTATACGGATATCCATAGGAATATAAAAGGTTAAAAATGATTAATAT
1 TTTGAAATCTTTT-ATACCCCTACGGATACCCATAAGAATATAAAAGATTAAAAATGATTAATAT
*
113575 TTATTTAT-TTTTGAAAAAAAAATCAATTCGTACCTTAATGGATTCCCAAAAAGATACAAAAAGT
65 TTATTTATGTTTTG---AAAAAATCAATTCGTACCTTAATGGATACCCAAAAAGATAC----A-T
113639 T
122 T
* * * *
113640 TTTGAAATCTTTTATACCCCTATGGATACCCATAAGAATATAAAAGACTTGAAAATAATTGATAT
1 TTTGAAATCTTTTATACCCCTACGGATACCCATAAGAATATAAAAGA-TTAAAAATGATTAATAT
* *
113705 TTATTTGTGTTTTGAAAAAATCATTTCGTACCTTAATGGATACCCAAAAAGATACATT
65 TTATTTATGTTTTGAAAAAATCAATTCGTACCTTAATGGATACCCAAAAAGATACATT
* * *
113763 TTTGAAATCTTTTATACCCCTACGAATACCCGTAAGAATATAAATGATTAAAAAATGATTAAT
1 TTTGAAATCTTTTATACCCCTACGGATACCCATAAGAATATAAAAGATT-AAAAATGATTAAT
113826 GTTTCTTTTA
Statistics
Matches: 164, Mismatches: 19, Indels: 13
0.84 0.10 0.07
Matches are distributed among these distances:
122 2 0.01
123 55 0.34
124 1 0.01
128 39 0.24
129 28 0.17
130 34 0.21
131 5 0.03
ACGTcount: A:0.42, C:0.13, G:0.11, T:0.35
Consensus pattern (122 bp):
TTTGAAATCTTTTATACCCCTACGGATACCCATAAGAATATAAAAGATTAAAAATGATTAATATT
TATTTATGTTTTGAAAAAATCAATTCGTACCTTAATGGATACCCAAAAAGATACATT
Done.