Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold286
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1428881
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.33
Warning! 499 characters in sequence are not A, C, G, or T
File 3 of 9
Found at i:311107 original size:13 final size:13
Alignment explanation
Indices: 311089--311113 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
311079 ACATTTGGTC
311089 ATGTATCGATACA
1 ATGTATCGATACA
311102 ATGTATCGATAC
1 ATGTATCGATAC
311114 TGTGCAATAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:311718 original size:12 final size:12
Alignment explanation
Indices: 311701--311725 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
311691 TCTCCCCCTT
311701 AATAAGGCAATC
1 AATAAGGCAATC
311713 AATAAGGCAATC
1 AATAAGGCAATC
311725 A
1 A
311726 CATATTTCTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.52, C:0.16, G:0.16, T:0.16
Consensus pattern (12 bp):
AATAAGGCAATC
Found at i:313115 original size:21 final size:21
Alignment explanation
Indices: 313084--313128 Score: 56
Period size: 20 Copynumber: 2.1 Consensus size: 21
313074 GCTGCTAGTG
*
313084 TGGGGGCTGCCCGGTTACGACC
1 TGGGGGCTG-CCGGTCACGACC
*
313106 TGGGGG-TGCCGGTCGCGACC
1 TGGGGGCTGCCGGTCACGACC
313126 TGG
1 TGG
313129 TGAGTGCTGC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 13 0.62
21 2 0.10
22 6 0.29
ACGTcount: A:0.07, C:0.29, G:0.47, T:0.18
Consensus pattern (21 bp):
TGGGGGCTGCCGGTCACGACC
Found at i:313588 original size:13 final size:13
Alignment explanation
Indices: 313570--313607 Score: 58
Period size: 13 Copynumber: 2.9 Consensus size: 13
313560 ATAAACCCTT
313570 TGTATCGATACAA
1 TGTATCGATACAA
*
313583 TGTATCAATACAA
1 TGTATCGATACAA
*
313596 TGCATCGATACA
1 TGTATCGATACA
313608 GAGAATGCTG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.39, C:0.18, G:0.13, T:0.29
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:314872 original size:19 final size:19
Alignment explanation
Indices: 314848--314913 Score: 90
Period size: 19 Copynumber: 3.8 Consensus size: 19
314838 TGTCAACGAT
314848 TTGTATCGATACATAAGTG
1 TTGTATCGATACATAAGTG
314867 TTGTATCGATAC--AA---
1 TTGTATCGATACATAAGTG
314881 -TGTATCGATACATAAGTG
1 TTGTATCGATACATAAGTG
314899 TTGTATCGATACATA
1 TTGTATCGATACATA
314914 TGAAGCTACT
Statistics
Matches: 41, Mismatches: 0, Indels: 12
0.77 0.00 0.23
Matches are distributed among these distances:
13 11 0.27
15 2 0.05
17 2 0.05
19 26 0.63
ACGTcount: A:0.33, C:0.12, G:0.18, T:0.36
Consensus pattern (19 bp):
TTGTATCGATACATAAGTG
Found at i:314885 original size:32 final size:32
Alignment explanation
Indices: 314849--314911 Score: 126
Period size: 32 Copynumber: 2.0 Consensus size: 32
314839 GTCAACGATT
314849 TGTATCGATACATAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAGTGTTGTATCGATACAA
314881 TGTATCGATACATAAGTGTTGTATCGATACA
1 TGTATCGATACATAAGTGTTGTATCGATACA
314912 TATGAAGCTA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.33, C:0.13, G:0.19, T:0.35
Consensus pattern (32 bp):
TGTATCGATACATAAGTGTTGTATCGATACAA
Found at i:314886 original size:13 final size:13
Alignment explanation
Indices: 314868--314892 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
314858 ACATAAGTGT
314868 TGTATCGATACAA
1 TGTATCGATACAA
314881 TGTATCGATACA
1 TGTATCGATACA
314893 TAAGTGTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:315027 original size:32 final size:32
Alignment explanation
Indices: 314988--315064 Score: 145
Period size: 32 Copynumber: 2.4 Consensus size: 32
314978 CACTGATCTT
314988 TGTATCGATACATGCAGGCAAATTTGCCCAGA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGA
*
315020 TTTATCGATACATGCAGGCAAATTTGCCCAGA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGA
315052 TGTATCGATACAT
1 TGTATCGATACAT
315065 TATGAAATGT
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
32 43 1.00
ACGTcount: A:0.31, C:0.21, G:0.19, T:0.29
Consensus pattern (32 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGA
Found at i:315986 original size:20 final size:20
Alignment explanation
Indices: 315949--315987 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
315939 ACACCCTTGA
*
315949 TCATGCATTTTTACCATGTT
1 TCATGCATTTATACCATGTT
*
315969 TCATGCATTTATAGCATGT
1 TCATGCATTTATACCATGT
315988 CTAGCACCTC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.23, C:0.18, G:0.13, T:0.46
Consensus pattern (20 bp):
TCATGCATTTATACCATGTT
Found at i:328854 original size:10 final size:10
Alignment explanation
Indices: 328834--328895 Score: 79
Period size: 10 Copynumber: 5.9 Consensus size: 10
328824 AAGAAAGAAG
328834 AAAAAACAAAC
1 AAAAAA-AAAC
328845 AAAAAAAAAC
1 AAAAAAAAAC
*
328855 AAAGAAAAAAT
1 AAA-AAAAAAC
*
328866 AGAAAAAAAC
1 AAAAAAAAAC
328876 AAAAAAAAAC
1 AAAAAAAAAC
328886 AAAACAAAAA
1 AAAA-AAAAA
328896 AACAACAAAA
Statistics
Matches: 45, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
10 26 0.58
11 19 0.42
ACGTcount: A:0.85, C:0.10, G:0.03, T:0.02
Consensus pattern (10 bp):
AAAAAAAAAC
Found at i:328871 original size:23 final size:22
Alignment explanation
Indices: 328834--328906 Score: 76
Period size: 21 Copynumber: 3.2 Consensus size: 22
328824 AAGAAAGAAG
328834 AAAAAACAAACAAAAAAAAACAAA
1 AAAAAAC-AA-AAAAAAAAACAAA
* * *
328858 GAAAAA-ATAGAAAAAAACAAA
1 AAAAAACAAAAAAAAAAACAAA
*
328879 AAAAAACAAAACAAAAAAACAAC
1 AAAAAACAAAA-AAAAAAACAAA
328902 AAAAA
1 AAAAA
328907 GGGTCCGGAT
Statistics
Matches: 40, Mismatches: 7, Indels: 5
0.77 0.13 0.10
Matches are distributed among these distances:
21 17 0.43
22 3 0.08
23 15 0.38
24 5 0.12
ACGTcount: A:0.85, C:0.11, G:0.03, T:0.01
Consensus pattern (22 bp):
AAAAAACAAAAAAAAAAACAAA
Found at i:328895 original size:31 final size:32
Alignment explanation
Indices: 328813--328888 Score: 100
Period size: 32 Copynumber: 2.4 Consensus size: 32
328803 ATCCTCCGTA
** * * *
328813 AAAAAAAAAGGAAGAAAGAAGAAAAAACAAAC
1 AAAAAAAAACAAAGAAAAAATAGAAAACAAAC
328845 AAAAAAAAACAAAGAAAAAATAGAAAA-AAAC
1 AAAAAAAAACAAAGAAAAAATAGAAAACAAAC
328876 AAAAAAAAACAAA
1 AAAAAAAAACAAA
328889 ACAAAAAAAC
Statistics
Matches: 39, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
31 17 0.44
32 22 0.56
ACGTcount: A:0.83, C:0.07, G:0.09, T:0.01
Consensus pattern (32 bp):
AAAAAAAAACAAAGAAAAAATAGAAAACAAAC
Found at i:330383 original size:28 final size:28
Alignment explanation
Indices: 330347--330400 Score: 99
Period size: 28 Copynumber: 1.9 Consensus size: 28
330337 ACCCTTTTTC
330347 AAAGCCCACAAGTCAGTGGCAACCTTCA
1 AAAGCCCACAAGTCAGTGGCAACCTTCA
*
330375 AAAGCCCACAAGTCAGTGGCACCCTT
1 AAAGCCCACAAGTCAGTGGCAACCTT
330401 TTTCGAAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.33, C:0.33, G:0.19, T:0.15
Consensus pattern (28 bp):
AAAGCCCACAAGTCAGTGGCAACCTTCA
Found at i:330412 original size:30 final size:30
Alignment explanation
Indices: 330336--330434 Score: 123
Period size: 30 Copynumber: 3.4 Consensus size: 30
330326 AGACATCCCT
330336 CACCCTTTTTCAAAGCCCACAAGTCAGTGG
1 CACCCTTTTTCAAAGCCCACAAGTCAGTGG
*
330366 CAACC---TTCAAAAGCCCACAAGTCAGTGG
1 CACCCTTTTTC-AAAGCCCACAAGTCAGTGG
* * *
330394 CACCCTTTTTCGAAGCCCACAATTCCGTGG
1 CACCCTTTTTCAAAGCCCACAAGTCAGTGG
*
330424 CACCGTTTTTC
1 CACCCTTTTTC
330435 TTTTTAAAGC
Statistics
Matches: 59, Mismatches: 6, Indels: 8
0.81 0.08 0.11
Matches are distributed among these distances:
27 3 0.05
28 23 0.39
30 30 0.51
31 3 0.05
ACGTcount: A:0.25, C:0.34, G:0.16, T:0.24
Consensus pattern (30 bp):
CACCCTTTTTCAAAGCCCACAAGTCAGTGG
Found at i:330484 original size:34 final size:34
Alignment explanation
Indices: 330406--330516 Score: 152
Period size: 34 Copynumber: 3.2 Consensus size: 34
330396 CCCTTTTTCG
* * *
330406 AAGCCCACAATTCCGTGGCAC-CGTTTTTCTTTTT
1 AAGCCCACAACTCCGTGGCACTC-TTTTTCCTTCT
*
330440 AAAGCCCACAACTCTGTGGCACTCTTTTTCCTTCT
1 -AAGCCCACAACTCCGTGGCACTCTTTTTCCTTCT
330475 AAGCCCACAACTCCGTGGCACTCTTTTTCCTTCT
1 AAGCCCACAACTCCGTGGCACTCTTTTTCCTTCT
*
330509 AAGTCCAC
1 AAGCCCAC
330517 GAGTCTGTGG
Statistics
Matches: 69, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
34 40 0.58
35 28 0.41
36 1 0.01
ACGTcount: A:0.20, C:0.34, G:0.13, T:0.33
Consensus pattern (34 bp):
AAGCCCACAACTCCGTGGCACTCTTTTTCCTTCT
Found at i:330527 original size:34 final size:34
Alignment explanation
Indices: 330406--330529 Score: 151
Period size: 34 Copynumber: 3.6 Consensus size: 34
330396 CCCTTTTTCG
* * * *
330406 AAGCCCACAATTCCGTGGCAC-CGTTTTTCTTTTT
1 AAGCCCACAACTCTGTGGCACTC-TTTTTCCTTCT
330440 AAAGCCCACAACTCTGTGGCACTCTTTTTCCTTCT
1 -AAGCCCACAACTCTGTGGCACTCTTTTTCCTTCT
*
330475 AAGCCCACAACTCCGTGGCACTCTTTTTCCTTCT
1 AAGCCCACAACTCTGTGGCACTCTTTTTCCTTCT
* * *
330509 AAGTCCACGAGTCTGTGGCAC
1 AAGCCCACAACTCTGTGGCAC
330530 CCTTATCTTT
Statistics
Matches: 79, Mismatches: 9, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
34 50 0.63
35 28 0.35
36 1 0.01
ACGTcount: A:0.19, C:0.33, G:0.15, T:0.32
Consensus pattern (34 bp):
AAGCCCACAACTCTGTGGCACTCTTTTTCCTTCT
Found at i:330651 original size:49 final size:49
Alignment explanation
Indices: 330524--330968 Score: 527
Period size: 49 Copynumber: 9.1 Consensus size: 49
330514 CACGAGTCTG
* * *
330524 TGGCACCCTTATCTTTAAGCCCAATGTAGCTGGCCTTGACTTAGCACAT
1 TGGCACCCTTATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACAT
* *
330573 TGGCA--C----CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATAT
1 TGGCACCCTTATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACAT
* * *
330616 TGGCACCCTTATCTTTAAGACTAATGTCGCTGGCCTTGAATCAGCACAT
1 TGGCACCCTTATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACAT
* *
330665 TGGCACCCTCATCTTTAAGTCCAATGTAGCTGACCTTGAATCAGCACAT
1 TGGCACCCTTATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACAT
* *
330714 TGGCA-CCTTCATCTTTAAGTCCAATAG-CGCTGGCCTTGAATCAGCATAT
1 TGGCACCCTT-ATCTTTAAGTCCAAT-GTAGCTGGCCTTGAATCAGCACAT
* * *
330763 TGGCA-CCTTTTCCGTCTTAAGACCAATGTCGCTGGCCTTGAATCAGCACAT
1 TGGCACCCTTAT-C-T-TTAAGTCCAATGTAGCTGGCCTTGAATCAGCACAT
*
330814 TGGCACCCTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACAT
1 TGGCACCCTTATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACAT
*
330863 TGGCA-CCTTCATCTTTAAGTCCAATAGT-GCTGGCCTTGAATCAGCATAT
1 TGGCACCCTT-ATCTTTAAGTCCAAT-GTAGCTGGCCTTGAATCAGCACAT
* * *
330912 TGGCA-CCTTTTCCGTCTTGAGTCCAATGTAGCTGACCTTGAATCAGCACAT
1 TGGCACCCTTAT-C-T-TTAAGTCCAATGTAGCTGGCCTTGAATCAGCACAT
*
330963 TAGCAC
1 TGGCAC
330969 AAGTCCAATA
Statistics
Matches: 343, Mismatches: 33, Indels: 37
0.83 0.08 0.09
Matches are distributed among these distances:
43 37 0.11
45 1 0.00
47 1 0.00
48 8 0.02
49 213 0.62
50 9 0.03
51 70 0.20
52 4 0.01
ACGTcount: A:0.24, C:0.27, G:0.18, T:0.30
Consensus pattern (49 bp):
TGGCACCCTTATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACAT
Found at i:330822 original size:149 final size:149
Alignment explanation
Indices: 330524--330968 Score: 683
Period size: 149 Copynumber: 3.0 Consensus size: 149
330514 CACGAGTCTG
* * * *
330524 TGGCACCCTTATCTTTAAGCCCAATGTAGCTGGCCTTGACTTAGCACATTGGCA----C--CTTT
1 TGGCACCCTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTT
* * *
330583 AAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCCTTAT-C-T-TTAAGACTAATGTCG
66 AAGTCCAATAGAGCTGGCCTTGAATCAGCATATTGGCA-CCTTTTCCGTCTTAAGACCAATGTCG
330645 CTGGCCTTGAATCAGCACAT
130 CTGGCCTTGAATCAGCACAT
*
330665 TGGCACCCTCATCTTTAAGTCCAATGTAGCTGACCTTGAATCAGCACATTGGCACCTTCATCTTT
1 TGGCACCCTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTT
*
330730 AAGTCCAATAGCGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCGTCTTAAGACCAATGTCGC
66 AAGTCCAATAGAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCGTCTTAAGACCAATGTCGC
330795 TGGCCTTGAATCAGCACAT
131 TGGCCTTGAATCAGCACAT
330814 TGGCACCCTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTT
1 TGGCACCCTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTT
* * * *
330879 AAGTCCAATAGTGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCGTCTTGAGTCCAATGTAGC
66 AAGTCCAATAGAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCGTCTTAAGACCAATGTCGC
*
330944 TGACCTTGAATCAGCACAT
131 TGGCCTTGAATCAGCACAT
*
330963 TAGCAC
1 TGGCAC
330969 AAGTCCAATA
Statistics
Matches: 279, Mismatches: 16, Indels: 10
0.91 0.05 0.03
Matches are distributed among these distances:
141 49 0.18
145 1 0.00
146 5 0.02
147 41 0.15
148 1 0.00
149 182 0.65
ACGTcount: A:0.24, C:0.27, G:0.18, T:0.30
Consensus pattern (149 bp):
TGGCACCCTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTT
AAGTCCAATAGAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCGTCTTAAGACCAATGTCGC
TGGCCTTGAATCAGCACAT
Found at i:331866 original size:19 final size:19
Alignment explanation
Indices: 331842--331939 Score: 103
Period size: 19 Copynumber: 5.8 Consensus size: 19
331832 TGTCAACGAT
331842 TTGTATCGATACATAAGTG
1 TTGTATCGATACATAAGTG
331861 TTGTATCGATAC--AA---
1 TTGTATCGATACATAAGTG
*
331875 -TGTATCGATACAAAAGTG
1 TTGTATCGATACATAAGTG
331893 TTGTATCGATAC---A---
1 TTGTATCGATACATAAGTG
331906 TTGTATCGATACATAAGTG
1 TTGTATCGATACATAAGTG
331925 TTGTATCGATACATA
1 TTGTATCGATACATA
331940 TGAAGCTATT
Statistics
Matches: 67, Mismatches: 0, Indels: 24
0.74 0.00 0.26
Matches are distributed among these distances:
13 23 0.34
15 2 0.03
16 2 0.03
17 2 0.03
19 38 0.57
ACGTcount: A:0.34, C:0.12, G:0.18, T:0.36
Consensus pattern (19 bp):
TTGTATCGATACATAAGTG
Found at i:331880 original size:13 final size:13
Alignment explanation
Indices: 331862--331887 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
331852 ACATAAGTGT
331862 TGTATCGATACAA
1 TGTATCGATACAA
331875 TGTATCGATACAA
1 TGTATCGATACAA
331888 AAGTGTTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:331911 original size:13 final size:13
Alignment explanation
Indices: 331893--331919 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
331883 TACAAAAGTG
331893 TTGTATCGATACA
1 TTGTATCGATACA
331906 TTGTATCGATACA
1 TTGTATCGATACA
331919 T
1 T
331920 AAGTGTTGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:331938 original size:32 final size:32
Alignment explanation
Indices: 331842--331938 Score: 176
Period size: 32 Copynumber: 3.0 Consensus size: 32
331832 TGTCAACGAT
331842 TTGTATCGATACATAAGTGTTGTATCGATACA
1 TTGTATCGATACATAAGTGTTGTATCGATACA
* *
331874 ATGTATCGATACAAAAGTGTTGTATCGATACA
1 TTGTATCGATACATAAGTGTTGTATCGATACA
331906 TTGTATCGATACATAAGTGTTGTATCGATACA
1 TTGTATCGATACATAAGTGTTGTATCGATACA
331938 T
1 T
331939 ATGAAGCTAT
Statistics
Matches: 61, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 61 1.00
ACGTcount: A:0.33, C:0.12, G:0.19, T:0.36
Consensus pattern (32 bp):
TTGTATCGATACATAAGTGTTGTATCGATACA
Found at i:331999 original size:13 final size:13
Alignment explanation
Indices: 331981--332005 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
331971 ATTACTCAAA
331981 TGTATCGATACAT
1 TGTATCGATACAT
331994 TGTATCGATACA
1 TGTATCGATACA
332006 CTAATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:332058 original size:52 final size:52
Alignment explanation
Indices: 332014--332139 Score: 216
Period size: 52 Copynumber: 2.4 Consensus size: 52
332004 CACTAATCTT
332014 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATGAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATGAAA
* * *
332066 TGTATTGATACATGCAGGCAAATTTGCCCAGGTGTATCGATACATTATGAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATGAAA
*
332118 TGTATCGATACATACAGGCAAA
1 TGTATCGATACATGCAGGCAAA
332140 ATTTCATATT
Statistics
Matches: 69, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
52 69 1.00
ACGTcount: A:0.35, C:0.17, G:0.20, T:0.28
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATGAAA
Found at i:340162 original size:13 final size:13
Alignment explanation
Indices: 340144--340169 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
340134 CATTTTGGGA
340144 TGTATCGATACAT
1 TGTATCGATACAT
340157 TGTATCGATACAT
1 TGTATCGATACAT
340170 CTTGTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:340166 original size:33 final size:32
Alignment explanation
Indices: 340124--340187 Score: 92
Period size: 33 Copynumber: 2.0 Consensus size: 32
340114 TACAAGCCAA
*
340124 TGTATCGATACATTTTGGGATGTATCGATACAT
1 TGTATCGATACATCTTGGG-TGTATCGATACAT
* *
340157 TGTATCGATACATCTTGTGTGTATTGATACA
1 TGTATCGATACATCTTGGGTGTATCGATACA
340188 AACAGTTAAG
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 11 0.39
33 17 0.61
ACGTcount: A:0.27, C:0.12, G:0.20, T:0.41
Consensus pattern (32 bp):
TGTATCGATACATCTTGGGTGTATCGATACAT
Found at i:341916 original size:9 final size:10
Alignment explanation
Indices: 341894--341919 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
341884 GAGTCGATTT
341894 AAAAATATGA
1 AAAAATATGA
341904 AAAAATATGA
1 AAAAATATGA
341914 AAAAAT
1 AAAAAT
341920 CATTTTTTGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.73, C:0.00, G:0.08, T:0.19
Consensus pattern (10 bp):
AAAAATATGA
Found at i:342417 original size:39 final size:39
Alignment explanation
Indices: 342363--342439 Score: 118
Period size: 39 Copynumber: 2.0 Consensus size: 39
342353 GTGATACAGA
* *
342363 TGCCAATATGCTGATTCACGGCCAACGATATTGGACTTG
1 TGCCAATATGCTGATTCAAGGCCAACGACATTGGACTTG
* *
342402 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTT
1 TGCCAATATGCTGATTCAAGGCCAACGACATTGGACTT
342440 AAAGACAAGG
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 34 1.00
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.27
Consensus pattern (39 bp):
TGCCAATATGCTGATTCAAGGCCAACGACATTGGACTTG
Found at i:342764 original size:39 final size:39
Alignment explanation
Indices: 342710--342786 Score: 109
Period size: 39 Copynumber: 2.0 Consensus size: 39
342700 GTGATAAAGA
* *
342710 TGCCAATATGCTGATTCACGGCCAACGATATTGGACTTG
1 TGCCAATATGCTGATTCAAGGCCAACGACATTGGACTTG
* * *
342749 TGCCAATGTGTTGATTCAAGGCCAGCGACATTGGACTT
1 TGCCAATATGCTGATTCAAGGCCAACGACATTGGACTT
342787 AAAGACAAGG
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
39 33 1.00
ACGTcount: A:0.25, C:0.22, G:0.25, T:0.29
Consensus pattern (39 bp):
TGCCAATATGCTGATTCAAGGCCAACGACATTGGACTTG
Found at i:342785 original size:347 final size:347
Alignment explanation
Indices: 342145--342879 Score: 1290
Period size: 347 Copynumber: 2.1 Consensus size: 347
342135 AGAAAGATAG
* * * * * *
342145 CAATATGCTGATTCACGGCCAACGATATTGGGCTTAAAGATAAGAAAAAGAATGTCAATGTGCTG
1 CAATGTGCTGATTCAAGGCCAGCAACATTGGTCTTAAAGATAAGAAAAAGAATGTCAATGTGCTG
* *
342210 ATTCACGGTCAGCGACATTAGACTTGAAGAAGAATGCCAATGTACTGAGACAAGGCCAACGACAT
66 ATTCACAGTCAGCGACATTAGACTTGAAGAAGAATGCCAATGTACTAAGACAAGGCCAACGACAT
* * *
342275 TGGGCTTAGGAATGTTAAAGATGGCAATACGCTGATTTAAGGCCAACGATATTGGACTTAAAGAT
131 TGGGCTTAGGAATGTTAAAGATGGCAATACGCGGATTAAAGGCCAACGATATTGAACTTAAAGAT
*
342340 GAAGGTGAGAAAAGTGATACAGATGCCAATATGCTGATTCACGGCCAACGATATTGGACTTGTGC
196 GAAGGTGAGAAAAGTGATAAAGATGCCAATATGCTGATTCACGGCCAACGATATTGGACTTGTGC
342405 CAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGACAAGGTGCCAATACGCCGATTCAAA
261 CAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGACAAGGTGCCAATACGCCGATTCAAA
342470 ACCAGCGATATTGGGCTTATGC
326 ACCAGCGATATTGGGCTTATGC
* * *
342492 CAATGTGCTGATTCAAGGCTAGCAACATTGGTCTTAAAGATCAGAAAAAGGATGTCAATGTGCTG
1 CAATGTGCTGATTCAAGGCCAGCAACATTGGTCTTAAAGATAAGAAAAAGAATGTCAATGTGCTG
* * *
342557 ATTCACAGTTAGCGACATTAGACTTGAAGAAGAATGCCAATGTGCTAAGACAAGGCCTACGACAT
66 ATTCACAGTCAGCGACATTAGACTTGAAGAAGAATGCCAATGTACTAAGACAAGGCCAACGACAT
342622 TGGGCTTAGGAATGTTAAAGATGGCAATACGCGGATTAAAGGCCAACGATATTGAACTTAAAGAT
131 TGGGCTTAGGAATGTTAAAGATGGCAATACGCGGATTAAAGGCCAACGATATTGAACTTAAAGAT
342687 GAAGGTGAGAAAAGTGATAAAGATGCCAATATGCTGATTCACGGCCAACGATATTGGACTTGTGC
196 GAAGGTGAGAAAAGTGATAAAGATGCCAATATGCTGATTCACGGCCAACGATATTGGACTTGTGC
* *
342752 CAATGTGTTGATTCAAGGCCAGCGACATTGGACTTAAAGACAAGGTGCCAATACGTCGATTCAAA
261 CAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGACAAGGTGCCAATACGCCGATTCAAA
342817 ACCAGCGATATTGGGCTTATGC
326 ACCAGCGATATTGGGCTTATGC
342839 CAATGTGCTGATTCAAGGCCAGCAACATTGGTCTTAAAGAT
1 CAATGTGCTGATTCAAGGCCAGCAACATTGGTCTTAAAGAT
342880 GCCGGTACCA
Statistics
Matches: 367, Mismatches: 21, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
347 367 1.00
ACGTcount: A:0.34, C:0.18, G:0.25, T:0.24
Consensus pattern (347 bp):
CAATGTGCTGATTCAAGGCCAGCAACATTGGTCTTAAAGATAAGAAAAAGAATGTCAATGTGCTG
ATTCACAGTCAGCGACATTAGACTTGAAGAAGAATGCCAATGTACTAAGACAAGGCCAACGACAT
TGGGCTTAGGAATGTTAAAGATGGCAATACGCGGATTAAAGGCCAACGATATTGAACTTAAAGAT
GAAGGTGAGAAAAGTGATAAAGATGCCAATATGCTGATTCACGGCCAACGATATTGGACTTGTGC
CAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGACAAGGTGCCAATACGCCGATTCAAA
ACCAGCGATATTGGGCTTATGC
Found at i:342828 original size:87 final size:87
Alignment explanation
Indices: 342710--342984 Score: 275
Period size: 87 Copynumber: 3.1 Consensus size: 87
342700 GTGATAAAGA
* *** *
342710 TGCCAATATGCTGATTCACGGCCAACGATATTGGACTTGTGCCAATGTGTTGATTCAAGGCCAGC
1 TGCCAATACGCTGATTCAAAACCAACGATATTGGACTTGTGCCAATGTGCTGATTCAAGGCCAGC
*
342775 GACATTGGACTTAAAGACAAGG
66 GACATTGGTCTTAAAGACAAGG
* * *
342797 TGCCAATACG-TCGATTCAAAACCAGCGATATTGGGCTTATGCCAATGTGCTGATTCAAGGCCAG
1 TGCCAATACGCT-GATTCAAAACCAACGATATTGGACTTGTGCCAATGTGCTGATTCAAGGCCAG
* *
342861 CAACATTGGTCTTAAAGATGC-CGG
65 CGACATTGGTCTTAAAGA--CAAGG
* * ** * * *
342885 TACCAATATGCTGATTCAAGGCCAACGATATCGGACTTAAAGGTGTCAATATGCTGATTCAAGGC
1 TGCCAATACGCTGATTCAAAACCAACGATATTGGACTT----GTGCCAATGTGCTGATTCAAGGC
* * *
342950 CAGCGATATTGGGTTTTAAAGATAAGG
62 CAGCGACATT-GGTCTTAAAGACAAGG
342977 TGCCAATA
1 TGCCAATA
342985 TGCTAGTTTA
Statistics
Matches: 151, Mismatches: 27, Indels: 15
0.78 0.14 0.08
Matches are distributed among these distances:
86 1 0.01
87 70 0.46
88 31 0.21
89 2 0.01
92 37 0.25
93 10 0.07
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (87 bp):
TGCCAATACGCTGATTCAAAACCAACGATATTGGACTTGTGCCAATGTGCTGATTCAAGGCCAGC
GACATTGGTCTTAAAGACAAGG
Found at i:342915 original size:22 final size:22
Alignment explanation
Indices: 342890--342958 Score: 52
Period size: 22 Copynumber: 3.2 Consensus size: 22
342880 GCCGGTACCA
342890 ATATGCTGATTCAAGGCCAACG
1 ATATGCTGATTCAAGGCCAACG
* * *** *
342912 ATAT-CGGACTTAAAGG-TGTCA
1 ATATGCTGA-TTCAAGGCCAACG
*
342933 ATATGCTGATTCAAGGCCAGCG
1 ATATGCTGATTCAAGGCCAACG
342955 ATAT
1 ATAT
342959 TGGGTTTTAA
Statistics
Matches: 32, Mismatches: 12, Indels: 6
0.64 0.24 0.12
Matches are distributed among these distances:
21 14 0.44
22 18 0.56
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (22 bp):
ATATGCTGATTCAAGGCCAACG
Found at i:342988 original size:49 final size:49
Alignment explanation
Indices: 342836--343010 Score: 150
Period size: 49 Copynumber: 3.7 Consensus size: 49
342826 ATTGGGCTTA
* * * **
342836 TGCCAATGTGCTGATTCAAGGCCAGCAACATT-GGTCTTAAAGATGCCGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGGTCTTAAAGAT-AAGG
* * * *
342885 TACCAATATGCTGATTCAAGGCCAACGATA-TCGGACTT----A-AAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGGTCTTAAAGATAAGG
* *
342928 TGTCAATATGCTGATTCAAGGCCAGCGATATTGGGTTTTAAAGATAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGGTCTTAAAGATAAGG
* * *
342977 TGCCAATATGCT-AGTTTAAAGCCAGTGATATTGG
1 TGCCAATATGCTGA-TTCAAGGCCAGCGATATTGG
343011 ACTTAGAAGA
Statistics
Matches: 100, Mismatches: 18, Indels: 16
0.75 0.13 0.12
Matches are distributed among these distances:
43 29 0.29
44 5 0.05
45 1 0.01
48 3 0.03
49 62 0.62
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.27
Consensus pattern (49 bp):
TGCCAATATGCTGATTCAAGGCCAGCGATATTGGGTCTTAAAGATAAGG
Found at i:343007 original size:92 final size:92
Alignment explanation
Indices: 342712--343015 Score: 245
Period size: 87 Copynumber: 3.4 Consensus size: 92
342702 GATAAAGATG
** * * * *
342712 CCAATATGCTGATTCACGGCCAACGATATTGGACTT----GTGCCAATGTGTTGATTCAAGGCCA
1 CCAATATGCTGATTCAAAGCCAACGATATCGGACTTAAAGGTGTCAATATGCTGATTCAAGGCCA
* * * *
342773 GCGACATTGGACTTAAAGA-CAAGGTG
66 GCAACATTGGTCTTAAAGATGAAGGTA
* * * * * * *
342799 CCAATACG-TCGATTCAAAACCAGCGATATTGGGCTT--A--TGCCAATGTGCTGATTCAAGGCC
1 CCAATATGCT-GATTCAAAGCCAACGATATCGGACTTAAAGGTGTCAATATGCTGATTCAAGGCC
**
342859 AGCAACATTGGTCTTAAAGATGCCGGTA
65 AGCAACATTGGTCTTAAAGATGAAGGTA
*
342887 CCAATATGCTGATTCAAGGCCAACGATATCGGACTTAAAGGTGTCAATATGCTGATTCAAGGCCA
1 CCAATATGCTGATTCAAAGCCAACGATATCGGACTTAAAGGTGTCAATATGCTGATTCAAGGCCA
* * * *
342952 GCGATATTGGGTTTTAAAGAT-AAGGTG
66 GCAACATT-GGTCTTAAAGATGAAGGTA
* ** *
342979 CCAATATGCT-AGTTTAAAGCCAGTGATATTGGACTTA
1 CCAATATGCTGA-TTCAAAGCCAACGATATCGGACTTA
343016 GAAGAAGACG
Statistics
Matches: 175, Mismatches: 32, Indels: 15
0.79 0.14 0.07
Matches are distributed among these distances:
86 1 0.01
87 68 0.39
88 31 0.18
89 1 0.01
90 1 0.01
91 1 0.01
92 61 0.35
93 11 0.06
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27
Consensus pattern (92 bp):
CCAATATGCTGATTCAAAGCCAACGATATCGGACTTAAAGGTGTCAATATGCTGATTCAAGGCCA
GCAACATTGGTCTTAAAGATGAAGGTA
Found at i:343115 original size:29 final size:27
Alignment explanation
Indices: 343090--343164 Score: 80
Period size: 27 Copynumber: 2.7 Consensus size: 27
343080 GGTTGCCATT
343090 GACGTGTGGGCTTTGAAAAGGGTGCCACC
1 GACGTGTGGGC-TT-AAAAGGGTGCCACC
* * *
343119 GACTTGTGGGCTTCAAAGGGTGCCACG
1 GACGTGTGGGCTTAAAAGGGTGCCACC
*
343146 GA-GTTGTGGACTTAAAAGG
1 GACG-TGTGGGCTTAAAAGG
343165 AAAAAGAGTG
Statistics
Matches: 39, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
27 27 0.69
28 2 0.05
29 10 0.26
ACGTcount: A:0.23, C:0.17, G:0.37, T:0.23
Consensus pattern (27 bp):
GACGTGTGGGCTTAAAAGGGTGCCACC
Found at i:343144 original size:27 final size:27
Alignment explanation
Indices: 343105--343164 Score: 84
Period size: 27 Copynumber: 2.2 Consensus size: 27
343095 GTGGGCTTTG
*
343105 AAAAGGGTGCCACCGACTTGTGGGCTT
1 AAAAGGGTGCCACCGACTTGTGGACTT
* * *
343132 CAAAGGGTGCCACGGAGTTGTGGACTT
1 AAAAGGGTGCCACCGACTTGTGGACTT
343159 AAAAGG
1 AAAAGG
343165 AAAAAGAGTG
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.27, C:0.18, G:0.35, T:0.20
Consensus pattern (27 bp):
AAAAGGGTGCCACCGACTTGTGGACTT
Found at i:343176 original size:34 final size:34
Alignment explanation
Indices: 343133--343234 Score: 186
Period size: 34 Copynumber: 3.0 Consensus size: 34
343123 TGTGGGCTTC
* *
343133 AAAGGGTGCCACGGAGTTGTGGACTTAAAAGGAA
1 AAAGAGTGCCACGGAGTTGTGGGCTTAAAAGGAA
343167 AAAGAGTGCCACGGAGTTGTGGGCTTAAAAGGAA
1 AAAGAGTGCCACGGAGTTGTGGGCTTAAAAGGAA
343201 AAAGAGTGCCACGGAGTTGTGGGCTTAAAAGGAA
1 AAAGAGTGCCACGGAGTTGTGGGCTTAAAAGGAA
343235 GAAAAAAAAA
Statistics
Matches: 66, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 66 1.00
ACGTcount: A:0.35, C:0.12, G:0.35, T:0.18
Consensus pattern (34 bp):
AAAGAGTGCCACGGAGTTGTGGGCTTAAAAGGAA
Found at i:343196 original size:27 final size:28
Alignment explanation
Indices: 343094--343230 Score: 87
Period size: 34 Copynumber: 4.5 Consensus size: 28
343084 GCCATTGACG
* * * *
343094 TGTGGGCTTTGAAAAGGGTGCCACCGACT
1 TGTGGGC-TTAAAAAGAGTGCCACGGAGT
* *
343123 TGTGGGCTT-CAAAGGGTGCCACGGAGT
1 TGTGGGCTTAAAAAGAGTGCCACGGAGT
*
343150 TGTGGACTTAAAAGGAAAAAGAGTGCCACGGAGT
1 TGTGGGCTT------AAAAAGAGTGCCACGGAGT
343184 TGTGGGCTTAAAAGGAAAAAGAGTGCCACGGAGT
1 TGTGGGCTT------AAAAAGAGTGCCACGGAGT
343218 TGTGGGCTTAAAA
1 TGTGGGCTTAAAA
343231 GGAAGAAAAA
Statistics
Matches: 94, Mismatches: 7, Indels: 15
0.81 0.06 0.13
Matches are distributed among these distances:
27 23 0.24
28 6 0.06
29 7 0.07
34 58 0.62
ACGTcount: A:0.29, C:0.15, G:0.35, T:0.21
Consensus pattern (28 bp):
TGTGGGCTTAAAAAGAGTGCCACGGAGT
Found at i:344837 original size:14 final size:12
Alignment explanation
Indices: 344821--344878 Score: 64
Period size: 12 Copynumber: 4.5 Consensus size: 12
344811 TTCCTTCTTC
344821 TTTTGCTTTTTTG
1 TTTTG-TTTTTTG
344834 CTTTTGTTTGTTTTG
1 -TTTTG-TT-TTTTG
344849 TTTTG-TTTTTG
1 TTTTGTTTTTTG
344860 TTTTTGTTTTTTG
1 -TTTTGTTTTTTG
344873 TTTTGT
1 TTTTGT
344879 GGAGGATGCC
Statistics
Matches: 40, Mismatches: 1, Indels: 8
0.82 0.02 0.16
Matches are distributed among these distances:
11 5 0.12
12 12 0.30
13 6 0.15
14 12 0.30
15 5 0.12
ACGTcount: A:0.00, C:0.03, G:0.17, T:0.79
Consensus pattern (12 bp):
TTTTGTTTTTTG
Found at i:344850 original size:5 final size:5
Alignment explanation
Indices: 344829--344878 Score: 52
Period size: 5 Copynumber: 10.2 Consensus size: 5
344819 TCTTTTGCTT
*
344829 TTTTG CTTTTG -TTTG TTTTG TTTTG TTTTTG TTTT- TGTT- TTTTG TTTTG
1 TTTTG -TTTTG TTTTG TTTTG TTTTG -TTTTG TTTTG TTTTG TTTTG TTTTG
344878 T
1 T
344879 GGAGGATGCC
Statistics
Matches: 39, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
4 10 0.26
5 19 0.49
6 10 0.26
ACGTcount: A:0.00, C:0.02, G:0.18, T:0.80
Consensus pattern (5 bp):
TTTTG
Found at i:344858 original size:20 final size:19
Alignment explanation
Indices: 344821--344876 Score: 69
Period size: 20 Copynumber: 2.8 Consensus size: 19
344811 TTCCTTCTTC
*
344821 TTTTGCTTTTTTGCTTTTGT
1 TTTTG-TTTTTTGTTTTTGT
344841 TTGTT-TTGTTTTGTTTTTGT
1 TT-TTGTT-TTTTGTTTTTGT
344861 TTTTGTTTTTTGTTTT
1 TTTTGTTTTTTGTTTT
344877 GTGGAGGATG
Statistics
Matches: 32, Mismatches: 1, Indels: 7
0.80 0.03 0.17
Matches are distributed among these distances:
19 13 0.41
20 17 0.53
21 2 0.06
ACGTcount: A:0.00, C:0.04, G:0.16, T:0.80
Consensus pattern (19 bp):
TTTTGTTTTTTGTTTTTGT
Found at i:350154 original size:13 final size:13
Alignment explanation
Indices: 350132--350189 Score: 53
Period size: 13 Copynumber: 4.0 Consensus size: 13
350122 GGCAGTAGCT
*
350132 TTGTAGCGATACA
1 TTGTATCGATACA
350145 TTGTATCGATACAACA
1 TTGTATCGAT---ACA
350161 CTTGTGTATCGATACA
1 --T-TGTATCGATACA
350177 TTGTATCGATACA
1 TTGTATCGATACA
350190 AATTGTTGAA
Statistics
Matches: 38, Mismatches: 1, Indels: 12
0.75 0.02 0.24
Matches are distributed among these distances:
13 21 0.55
14 1 0.03
16 6 0.16
18 1 0.03
19 9 0.24
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.34
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:353631 original size:19 final size:18
Alignment explanation
Indices: 353604--353671 Score: 65
Period size: 19 Copynumber: 3.9 Consensus size: 18
353594 CAGTAGCTAA
*
353604 TTATCTATCGATACAATAC
1 TTATGTATCGATACAA-AC
353623 TTATGTATCGATAC--A-
1 TTATGTATCGATACAAAC
*
353638 -T-TGTATCGAAACAACAC
1 TTATGTATCGATACAA-AC
353655 TTATGTATCGATACAAA
1 TTATGTATCGATACAAA
353672 TTGTTGAATT
Statistics
Matches: 40, Mismatches: 3, Indels: 13
0.71 0.05 0.23
Matches are distributed among these distances:
13 10 0.25
14 1 0.03
16 2 0.05
18 2 0.05
19 25 0.62
ACGTcount: A:0.38, C:0.18, G:0.10, T:0.34
Consensus pattern (18 bp):
TTATGTATCGATACAAAC
Found at i:353657 original size:32 final size:32
Alignment explanation
Indices: 353609--353669 Score: 104
Period size: 32 Copynumber: 1.9 Consensus size: 32
353599 GCTAATTATC
* *
353609 TATCGATACAATACTTATGTATCGATACATTG
1 TATCGAAACAACACTTATGTATCGATACATTG
353641 TATCGAAACAACACTTATGTATCGATACA
1 TATCGAAACAACACTTATGTATCGATACA
353670 AATTGTTGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
32 27 1.00
ACGTcount: A:0.38, C:0.18, G:0.11, T:0.33
Consensus pattern (32 bp):
TATCGAAACAACACTTATGTATCGATACATTG
Found at i:354999 original size:77 final size:79
Alignment explanation
Indices: 354887--355078 Score: 214
Period size: 79 Copynumber: 2.5 Consensus size: 79
354877 GAAAGTGATG
* * * * *
354887 GGGTTGGAGTATCCCTGACAGTGAAAAA-TTGATATTTT-AGAAATAAAAAGAG-GTTAGAGTA-
1 GGGTTGGAGTATCCCCGAGA-TGAAAAATTTAATATTTTGA-AAACAAAAACAGAGTTAGAGTAT
*
354948 TCCCTTAAAAATAATA
64 TCCCTCAAAAATAATA
*
354964 GGGTTGGAGTATCCCCGAGATGAAAAATTTAATATTTTGAAAACAAAAACAGAGTTGGAGTATTC
1 GGGTTGGAGTATCCCCGAGATGAAAAATTTAATATTTTGAAAACAAAAACAGAGTTAGAGTATTC
* *
355029 TCTCAGAAATAATA
66 CCTCAAAAATAATA
** *
355043 CAGTTGGAGTATCCCC-ACGATGAAAATTTTAATATT
1 GGGTTGGAGTATCCCCGA-GATGAAAAATTTAATATT
355079 AAAATGGGGT
Statistics
Matches: 98, Mismatches: 12, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
76 7 0.07
77 37 0.38
78 10 0.10
79 44 0.45
ACGTcount: A:0.40, C:0.11, G:0.20, T:0.29
Consensus pattern (79 bp):
GGGTTGGAGTATCCCCGAGATGAAAAATTTAATATTTTGAAAACAAAAACAGAGTTAGAGTATTC
CCTCAAAAATAATA
Found at i:358146 original size:37 final size:38
Alignment explanation
Indices: 358105--358197 Score: 107
Period size: 38 Copynumber: 2.5 Consensus size: 38
358095 CATTAAATTA
358105 ATTTTTAAACTATTAGTTTC-GCCCAAGTCATCAAGTT
1 ATTTTTAAACTATTAGTTTCTGCCCAAGTCATCAAGTT
* * * * * **
358142 ATTTTTAGACTAATGGCTTCTGCCTAAGTCATTGAGTT
1 ATTTTTAAACTATTAGTTTCTGCCCAAGTCATCAAGTT
*
358180 ATTTTCAAACTATTAGTT
1 ATTTTTAAACTATTAGTT
358198 CTACCTAGGT
Statistics
Matches: 43, Mismatches: 12, Indels: 1
0.77 0.21 0.02
Matches are distributed among these distances:
37 16 0.37
38 27 0.63
ACGTcount: A:0.28, C:0.16, G:0.13, T:0.43
Consensus pattern (38 bp):
ATTTTTAAACTATTAGTTTCTGCCCAAGTCATCAAGTT
Found at i:361790 original size:33 final size:33
Alignment explanation
Indices: 361734--361799 Score: 89
Period size: 33 Copynumber: 2.0 Consensus size: 33
361724 TTTGAGGCAA
* *
361734 TGTATCGATACAATTCTTCATGTATTGATACAT
1 TGTATCGATACAATTCTGCATGTATTAATACAT
*
361767 TGTATCGATAC-ATTGTGCTATGTATTAATACAT
1 TGTATCGATACAATTCTGC-ATGTATTAATACAT
361800 ATAGTGGTAG
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
32 5 0.17
33 24 0.83
ACGTcount: A:0.30, C:0.14, G:0.14, T:0.42
Consensus pattern (33 bp):
TGTATCGATACAATTCTGCATGTATTAATACAT
Found at i:361899 original size:20 final size:19
Alignment explanation
Indices: 361849--361940 Score: 60
Period size: 20 Copynumber: 4.7 Consensus size: 19
361839 ACATTTGTTT
*
361849 ATGTATCGATACAATGAAC
1 ATGTATCGATACAAAGAAC
* *
361868 ATTTATCAATACAAAGCATA-
1 ATGTATCGATACAAAG-A-AC
** *
361888 ATGTATCGATACATCTGAAA
1 ATGTATCGATACA-AAGAAC
** *
361908 ATGTATCGATACATCTGAAA
1 ATGTATCGATACA-AAGAAC
361928 ATGTATCGATACA
1 ATGTATCGATACA
361941 TACAAGGGTT
Statistics
Matches: 62, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
19 14 0.23
20 46 0.74
21 2 0.03
ACGTcount: A:0.42, C:0.15, G:0.13, T:0.29
Consensus pattern (19 bp):
ATGTATCGATACAAAGAAC
Found at i:361941 original size:20 final size:20
Alignment explanation
Indices: 361887--361941 Score: 110
Period size: 20 Copynumber: 2.8 Consensus size: 20
361877 TACAAAGCAT
361887 AATGTATCGATACATCTGAA
1 AATGTATCGATACATCTGAA
361907 AATGTATCGATACATCTGAA
1 AATGTATCGATACATCTGAA
361927 AATGTATCGATACAT
1 AATGTATCGATACAT
361942 ACAAGGGTTT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 35 1.00
ACGTcount: A:0.40, C:0.15, G:0.15, T:0.31
Consensus pattern (20 bp):
AATGTATCGATACATCTGAA
Found at i:362077 original size:21 final size:21
Alignment explanation
Indices: 362025--362078 Score: 56
Period size: 22 Copynumber: 2.5 Consensus size: 21
362015 AAGTATTTTT
* *
362025 ACTTAAAAATATTTGATTTAA
1 ACTTAAAAACATTTGATTCAA
*
362046 AGCTCAAAAACATTTG-TTCATA
1 A-CTTAAAAACATTTGATTCA-A
362068 ACTTAAAAACA
1 ACTTAAAAACA
362079 CTTTTTGAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
21 13 0.48
22 14 0.52
ACGTcount: A:0.48, C:0.13, G:0.06, T:0.33
Consensus pattern (21 bp):
ACTTAAAAACATTTGATTCAA
Found at i:362485 original size:32 final size:30
Alignment explanation
Indices: 362435--362591 Score: 147
Period size: 32 Copynumber: 5.0 Consensus size: 30
362425 CCTTACAACA
*
362435 CTATC-TTTCAAGGCTAAGATAGAAACCTCC
1 CTATCTTTTCACGGCTAAGATAG-AACCTCC
362465 CTATCTTTTCACGGGCTAAGATAGAACCTTTTCC
1 CTATCTTTTCAC-GGCTAAGATAGAACC---TCC
* * *
362499 CTATCTTTTCACAGCTAAGATAGAACTTTC
1 CTATCTTTTCACGGCTAAGATAGAACCTCC
* *
362529 CTATCTTTTACAAAGGCTAAGATAGAACCTTTACA
1 CTATCTTTT-C-ACGGCTAAGATAGAACC--T-CC
*
362564 CTATC-TTTCAAGGCTAAGATAGAACCTC
1 CTATCTTTTCACGGCTAAGATAGAACCTC
362592 TCAATCACTT
Statistics
Matches: 108, Mismatches: 9, Indels: 21
0.78 0.07 0.15
Matches are distributed among these distances:
29 1 0.01
30 17 0.16
31 10 0.09
32 42 0.39
33 14 0.13
34 19 0.18
35 5 0.05
ACGTcount: A:0.31, C:0.24, G:0.13, T:0.32
Consensus pattern (30 bp):
CTATCTTTTCACGGCTAAGATAGAACCTCC
Found at i:362536 original size:64 final size:64
Alignment explanation
Indices: 362432--362591 Score: 225
Period size: 65 Copynumber: 2.5 Consensus size: 64
362422 TAACCTTACA
**
362432 ACACTATCTTTCAAGGCTAAGATAGAAACCTCCCTATCTTTT-CACGGGCTAAGATAGAACCTTT
1 ACACTATCTTTCAAGGCTAAGATAG-AACCTCCCTATCTTTTACAAAGGCTAAGATAGAACCTTT
* * * *
362496 TCCCTATCTTTTCACA-GCTAAGATAGAACTTTCCTATCTTTTACAAAGGCTAAGATAGAACCTT
1 ACACTATC-TTTCA-AGGCTAAGATAGAACCTCCCTATCTTTTACAAAGGCTAAGATAGAACCTT
362560 T
64 T
362561 ACACTATCTTTCAAGGCTAAGATAGAACCTC
1 ACACTATCTTTCAAGGCTAAGATAGAACCTC
362592 TCAATCACTT
Statistics
Matches: 82, Mismatches: 10, Indels: 8
0.82 0.10 0.08
Matches are distributed among these distances:
63 1 0.01
64 39 0.48
65 41 0.50
66 1 0.01
ACGTcount: A:0.32, C:0.24, G:0.12, T:0.31
Consensus pattern (64 bp):
ACACTATCTTTCAAGGCTAAGATAGAACCTCCCTATCTTTTACAAAGGCTAAGATAGAACCTTT
Found at i:363078 original size:52 final size:52
Alignment explanation
Indices: 363011--363118 Score: 135
Period size: 52 Copynumber: 2.1 Consensus size: 52
363001 ATGTATTTAA
* *
363011 AATTCTAGCCATTGGGCTCAATATATCAATACAATTCATAATGTATCGATAC
1 AATTATAGCCATTGGGCTCAATATATCAATACAATTCATAATCTATCGATAC
* * * * ** *
363063 AATTATAGCCGTTGGGCTTAATGTATCGATACAATTTGTCATCTATCGATAC
1 AATTATAGCCATTGGGCTCAATATATCAATACAATTCATAATCTATCGATAC
363115 AATT
1 AATT
363119 CACTTGGGGT
Statistics
Matches: 47, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
52 47 1.00
ACGTcount: A:0.33, C:0.18, G:0.14, T:0.35
Consensus pattern (52 bp):
AATTATAGCCATTGGGCTCAATATATCAATACAATTCATAATCTATCGATAC
Found at i:369049 original size:13 final size:13
Alignment explanation
Indices: 369031--369055 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
369021 CACCAATTCA
369031 TCATAATCAAATC
1 TCATAATCAAATC
369044 TCATAATCAAAT
1 TCATAATCAAAT
369056 ATTTAAGCTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.20, G:0.00, T:0.32
Consensus pattern (13 bp):
TCATAATCAAATC
Found at i:370498 original size:79 final size:79
Alignment explanation
Indices: 370395--371053 Score: 592
Period size: 79 Copynumber: 8.4 Consensus size: 79
370385 AATTTTAATA
* * * ** ** *
370395 TTTTGGAGATAAAATCGGGGTTGGAGTATCCTCTCGGAACCAATAGGGTTGGAGTATCCCCGATT
1 TTTTGGAAATAAAACCGGGGTTGGAGTATCCTCTCGAAAATAACGGGGTTAGAGTATCCCCGATT
* *
370460 GTGAAAAATTGATG
66 ATGAAAAATCGATG
* * *
370474 TTTTGAAAATAAAACCGGGATTGGAGTATCCT-T-GTAGAAATAATGGGGTTAGAGTATCCCCGA
1 TTTTGGAAATAAAACCGGGGTTGGAGTATCCTCTCG-A-AAATAACGGGGTTAGAGTATCCCCGA
* * * *
370537 TTGTCAAAAATCGGTA
64 TTATGAAAAATCGATG
* *
370553 TTTTAGAAATAAAACCAAGGG-TGGAGTATCCTCTC-AGAAATAACGGGGTTAGAGTATCCCCGA
1 TTTTGGAAATAAAACC-GGGGTTGGAGTATCCTCTCGA-AAATAACGGGGTTAGAGTATCCCCGA
* *
370616 TTGTGAAAAATCGGTG
64 TTATGAAAAATCGATG
* * * * *
370632 TTTTGGAAATAAAATCAGGGTTAGAGTATCCGCTCAAAAATAACGGGGTTAGAGTATCCCCGATT
1 TTTTGGAAATAAAACCGGGGTTGGAGTATCCTCTCGAAAATAACGGGGTTAGAGTATCCCCGATT
370697 ATGAAAAATCGATG
66 ATGAAAAATCGATG
* * * * * *
370711 TTTTGGATATAAAACTGGGGTTGGAGTATCC-CTTC-AGAAATAACAGTGTTGGAGTGTCCCCGA
1 TTTTGGAAATAAAACCGGGGTTGGAGTATCCTC-TCGA-AAATAACGGGGTTAGAGTATCCCCGA
*
370774 TTATGGAAAATC-AGTG
64 TTATGAAAAATCGA-TG
* *
370790 TTTTAGG-AAT-AAACCGGGGTTGGAGTATCCAT-TCGAAAATAACGGGGTTGGAGTATCCCTGA
1 TTTT-GGAAATAAAACCGGGGTTGGAGTATCC-TCTCGAAAATAACGGGGTTAGAGTATCCCCGA
370852 TTATCG-AAAATCGATG
64 TTAT-GAAAAATCGATG
* * * *
370868 TTTTGGAAATAAAA-TGAGGGTTGGAGTAT-TTCCTCGAAAATAATGGGGTTAGAGTATCCACGA
1 TTTTGGAAATAAAACCG-GGGTTGGAGTATCCT-CTCGAAAATAACGGGGTTAGAGTATCCCCGA
* * * ***
370931 TTGTGGAAAATTGGCA
64 TTATGAAAAATCGATG
* * * * * * *
370947 TTTTAGAAATTAAATCGGGGTTGAAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGGTT
1 TTTTGGAAATAAAACCGGGGTTGGAGTATCCTCTCGAAAATAACGGGGTTAGAGTATCCCCGATT
* *
371012 ATAAAAAAT-TAGTG
66 ATGAAAAATCGA-TG
* *
371026 TTTTGGAAATAAAA-CTGGGTTAGAGTAT
1 TTTTGGAAATAAAACCGGGGTTGGAGTAT
371054 TCCCGATTAT
Statistics
Matches: 480, Mismatches: 75, Indels: 51
0.79 0.12 0.08
Matches are distributed among these distances:
77 4 0.01
78 83 0.17
79 386 0.80
80 7 0.01
ACGTcount: A:0.32, C:0.13, G:0.26, T:0.29
Consensus pattern (79 bp):
TTTTGGAAATAAAACCGGGGTTGGAGTATCCTCTCGAAAATAACGGGGTTAGAGTATCCCCGATT
ATGAAAAATCGATG
Found at i:370918 original size:236 final size:236
Alignment explanation
Indices: 370395--371053 Score: 699
Period size: 236 Copynumber: 2.8 Consensus size: 236
370385 AATTTTAATA
* * * ** * *
370395 TTTTGGAGATAAAATCG-GGGTTGGAGTATCCTCTCGGAACCAATAGGGTTGGAGTATCCCCGAT
1 TTTTGGAAATAAAAT-GAGGGTTGGAGTATCCGCTCGAAAATAATGGGGTTAGAGTATCCCCGAT
* * * * *
370459 TGTGAAAAATTGATGTTTTGAAAATAAAACCGGGATTGGAGTAT-CCTTGTAGAAATAATGGGGT
65 TGTGAAAAATTGATGTTTTGGAAATAAAACTGGGGTTGGAGTATCCCTT-CAGAAATAACGGGGT
* * * * * *
370523 TAGAGTATCCCCGATTGTCAAAAATCGGTATTTTAGAAATAAAACCAAGGG-TGGAGTATCCTCT
129 TGGAGTATCCCCGATTATAAAAAATCAGTGTTTTAGGAAT-AAACC-AGGGTTGGAGTATCCTCT
* *
370587 CAGAAATAACGGGGTTAGAGTATCCCCGATTGTGAAAAATCGGTG
192 CAGAAATAACGGGGTTAGAGTATCCCCGATTATGAAAAATCGATG
* * * *
370632 TTTTGGAAATAAAATCAGGGTTAGAGTATCCGCTCAAAAATAACGGGGTTAGAGTATCCCCGATT
1 TTTTGGAAATAAAATGAGGGTTGGAGTATCCGCTCGAAAATAATGGGGTTAGAGTATCCCCGATT
* * * * *
370697 ATGAAAAATCGATGTTTTGGATATAAAACTGGGGTTGGAGTATCCCTTCAGAAATAACAGTGTTG
66 GTGAAAAATTGATGTTTTGGAAATAAAACTGGGGTTGGAGTATCCCTTCAGAAATAACGGGGTTG
* ** *
370762 GAGTGTCCCCGATTATGGAAAATCAGTGTTTTAGGAATAAACCGGGGTTGGAGTATCCAT-TC-G
131 GAGTATCCCCGATTATAAAAAATCAGTGTTTTAGGAATAAACCAGGGTTGGAGTATCC-TCTCAG
* *
370825 AAAATAACGGGGTTGGAGTATCCCTGATTATCG-AAAATCGATG
195 -AAATAACGGGGTTAGAGTATCCCCGATTAT-GAAAAATCGATG
* *
370868 TTTTGGAAATAAAATGAGGGTTGGAGTATTTC-CTCGAAAATAATGGGGTTAGAGTATCCACGAT
1 TTTTGGAAATAAAATGAGGGTTGGAGTA-TCCGCTCGAAAATAATGGGGTTAGAGTATCCCCGAT
* *** * * * *
370932 TGTGGAAAATTGGCATTTTAGAAATTAAA-TCGGGGTTGAAGTATCCCCTC-GAAAATAACGGGG
65 TGTGAAAAATTGATGTTTTGGAAATAAAACT-GGGGTTGGAGTATCCCTTCAG-AAATAACGGGG
* * * * *
370995 TTGGAGTATCCCCGGTTATAAAAAATTAGTGTTTT-GGAAATAAAACTGGGTTAGAGTAT
128 TTGGAGTATCCCCGATTATAAAAAATCAGTGTTTTAGG-AATAAACCAGGGTTGGAGTAT
371054 TCCCGATTAT
Statistics
Matches: 351, Mismatches: 61, Indels: 21
0.81 0.14 0.05
Matches are distributed among these distances:
235 8 0.02
236 202 0.58
237 137 0.39
238 4 0.01
ACGTcount: A:0.32, C:0.13, G:0.26, T:0.29
Consensus pattern (236 bp):
TTTTGGAAATAAAATGAGGGTTGGAGTATCCGCTCGAAAATAATGGGGTTAGAGTATCCCCGATT
GTGAAAAATTGATGTTTTGGAAATAAAACTGGGGTTGGAGTATCCCTTCAGAAATAACGGGGTTG
GAGTATCCCCGATTATAAAAAATCAGTGTTTTAGGAATAAACCAGGGTTGGAGTATCCTCTCAGA
AATAACGGGGTTAGAGTATCCCCGATTATGAAAAATCGATG
Found at i:371070 original size:50 final size:50
Alignment explanation
Indices: 370992--371155 Score: 161
Period size: 50 Copynumber: 3.2 Consensus size: 50
370982 GAAAATAACG
* * * *
370992 GGGTTGGAGTATCCCCGGTTATAAAAAATTAGTGTTTTGGAAATAAAACT-
1 GGGTTAGAGTATTCCCGATTAT-GAAAATTAGTGTTTTGGAAATAAAACTA
* *
371042 GGGTTAGAGTATTCCCGATTATGGAAAATTGGTATTTTGGAAATAAAACTA
1 GGGTTAGAGTATTCCCGATTAT-GAAAATTAGTGTTTTGGAAATAAAACTA
* * * * *
371093 GGCTTAGAGTA-TCTTCGATTGTGAAAAATCGATGTTTTGGAAATAAAACTA
1 GGGTTAGAGTATTC-CCGATTATGAAAATTAG-TGTTTTGGAAATAAAACTA
* *
371144 TGGTTGGAGTAT
1 GGGTTAGAGTAT
371156 CCCCTTAGAA
Statistics
Matches: 94, Mismatches: 16, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
50 52 0.55
51 42 0.45
ACGTcount: A:0.34, C:0.09, G:0.24, T:0.34
Consensus pattern (50 bp):
GGGTTAGAGTATTCCCGATTATGAAAATTAGTGTTTTGGAAATAAAACTA
Found at i:371121 original size:51 final size:51
Alignment explanation
Indices: 370993--371156 Score: 181
Period size: 51 Copynumber: 3.2 Consensus size: 51
370983 AAAATAACGG
* * * * *
370993 GGTTGGAGTATC-CCCGGTTATAAAAAATTAGTGTTTTGGAAATAAAACTG
1 GGTTAGAGTATCTCCCGATTATGAAAAATTGGTGTTTTGGAAATAAAACTA
* *
371043 GGTTAGAGTAT-TCCCGATTATGGAAAATTGGTATTTTGGAAATAAAACTA
1 GGTTAGAGTATCTCCCGATTATGAAAAATTGGTGTTTTGGAAATAAAACTA
* * * *
371093 GGCTTAGAGTATCT-TCGATTGTGAAAAATCGATGTTTTGGAAATAAAACTA
1 GG-TTAGAGTATCTCCCGATTATGAAAAATTGGTGTTTTGGAAATAAAACTA
*
371144 TGGTTGGAGTATC
1 -GGTTAGAGTATC
371157 CCCTTAGAAA
Statistics
Matches: 96, Mismatches: 14, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
50 44 0.46
51 49 0.51
52 3 0.03
ACGTcount: A:0.34, C:0.09, G:0.24, T:0.34
Consensus pattern (51 bp):
GGTTAGAGTATCTCCCGATTATGAAAAATTGGTGTTTTGGAAATAAAACTA
Found at i:371293 original size:74 final size:76
Alignment explanation
Indices: 371096--371308 Score: 218
Period size: 74 Copynumber: 2.8 Consensus size: 76
371086 AAAACTAGGC
* *
371096 TTAGAGTA-TCTTCGATTGTGAAAAATCGATGTTTTGGAAATAAAACTATGGTTGGAGTATCCCC
1 TTAGAGTATTCTT-GATTGTGAAAAATTGATGTTTTGGAAATAAAACGA-GGTTGGAGTATCCCC
*
371160 TTAGAAATAACAAGG
64 TTAG--AGAACAAGG
* * * * *
371175 TTAAAGTATCCTCGATTGTGAAAAACTAATGTTTTGGAAATAAAATCGAGGTTGGAGTATCCCC-
1 TTAGAGTATTCTTGATTGTGAAAAATTGATGTTTTGGAAATAAAA-CGAGGTTGGAGTATCCCCT
* **
371239 TCG-GAA-GGGG
65 TAGAGAACAAGG
* * *
371249 TTGGAGTATTCTTGATTGTGAAAAATTGGTGTTTTGGAAATAAAACCGGGGTTGGAGTAT
1 TTAGAGTATTCTTGATTGTGAAAAATTGATGTTTTGGAAATAAAA-CGAGGTTGGAGTAT
371309 TCTCGATTAT
Statistics
Matches: 112, Mismatches: 20, Indels: 9
0.79 0.14 0.06
Matches are distributed among these distances:
74 53 0.47
75 2 0.02
78 2 0.02
79 51 0.46
80 4 0.04
ACGTcount: A:0.32, C:0.10, G:0.25, T:0.32
Consensus pattern (76 bp):
TTAGAGTATTCTTGATTGTGAAAAATTGATGTTTTGGAAATAAAACGAGGTTGGAGTATCCCCTT
AGAGAACAAGG
Found at i:371300 original size:51 final size:51
Alignment explanation
Indices: 371245--371359 Score: 176
Period size: 51 Copynumber: 2.3 Consensus size: 51
371235 CCCCTCGGAA
* * * *
371245 GGGGTTGGAGTATTCTTGATTGTGAAAAATTGGTGTTTTGGAAATAAAACC
1 GGGGTTGGAGTATTCTCGATTATGAAAAATTAGTGTTTTGAAAATAAAACC
371296 GGGGTTGGAGTATTCTCGATTATGAAAAATTAGTGTTTTGAAAATAAAACC
1 GGGGTTGGAGTATTCTCGATTATGAAAAATTAGTGTTTTGAAAATAAAACC
**
371347 GAAGTTGGAGTAT
1 GGGGTTGGAGTAT
371360 CCCCTCGGAA
Statistics
Matches: 58, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
51 58 1.00
ACGTcount: A:0.32, C:0.06, G:0.28, T:0.34
Consensus pattern (51 bp):
GGGGTTGGAGTATTCTCGATTATGAAAAATTAGTGTTTTGAAAATAAAACC
Found at i:378254 original size:79 final size:78
Alignment explanation
Indices: 378166--378814 Score: 603
Period size: 79 Copynumber: 8.2 Consensus size: 78
378156 GATAAAACTG
* * * * * * *
378166 GGGTTGGAGTATCCCCTTAGAACTAACAAGGTTGGAGTATCTCTGATTGTGAAAAATCGGTGTTT
1 GGGTTGGAGTATCCCCTCAAAAATAAC-GGGTTGGAGTATCCCCGATTGTGAAAAATCGATGTTT
378231 TAGAAATAAAATCA
65 TAGAAATAAAATCA
* * * * *
378245 GGGTTGGAGTATCCCTTAAAAAATAACAAGGTTAGAGTATCCCCGATTGTGAAAAATCGATATTT
1 GGGTTGGAGTATCCCCTCAAAAATAAC-GGGTTGGAGTATCCCCGATTGTGAAAAATCGATGTTT
* * *
378310 TGGAAGTAAAAT-T
65 TAGAAATAAAATCA
* * *
378323 GAGGTTGGAGTATCCCCTCAGAAATAACTGGGTTAGAGTATCCCCGATTGTGAAAAATCGAT-AT
1 G-GGTTGGAGTATCCCCTCAAAAATAAC-GGGTTGGAGTATCCCCGATTGTGAAAAATCGATGTT
* *
378387 TTGGAAAATAAAA-CC
64 TTAG-AAATAAAATCA
* * * *
378402 GAGGTTAGAGTATCCCCTCGAAAATAACAGGGTTGGAGTATCCTCGATTGTGAAAAAT-TAGTGT
1 G-GGTTGGAGTATCCCCTCAAAAATAAC-GGGTTGGAGTATCCCCGATTGTGAAAAATCGA-TGT
*
378466 TTT-GAAAATAAAATCG
63 TTTAG-AAATAAAATCA
* * * * * * * *
378482 GGGTTAGAGTATCTCTTCGAAAATAACAGGATTGGAGTATCCCCGATTATGAAAAATTGATATTT
1 GGGTTGGAGTATCCCCTCAAAAATAAC-GGGTTGGAGTATCCCCGATTGTGAAAAATCGATGTTT
* *
378547 TAAAAATAAAATCG
65 TAGAAATAAAATCA
* * * *
378561 GGGCTGAAGTATCCCCTCAAAAATAACGGGGTTGGAGTATCCTCGATTATGAAAAATCGATGTTT
1 GGGTTGGAGTATCCCCTCAAAAATAAC-GGGTTGGAGTATCCCCGATTGTGAAAAATCGATGTTT
* **
378626 TAAAAATAAAGCCA
65 TAGAAATAAAATCA
* * * *
378640 GGGTTGAAGTATCCCCTCAAAAATAACGGGATTGGAGTATCCCCGATTGTGAAAAATTGGTATTT
1 GGGTTGGAGTATCCCCTCAAAAATAACGGG-TTGGAGTATCCCCGATTGTGAAAAATCGATGTTT
*
378705 TGGAAATAAAA-CTA
65 TAGAAATAAAATC-A
* * ** * *
378719 GGGTTGAAGTATTCCCTCAAAAATAACGGTGTTAAAGTATCCCCAATTGTGAAAAAT-TAGTGTT
1 GGGTTGGAGTATCCCCTCAAAAATAACGG-GTTGGAGTATCCCCGATTGTGAAAAATCGA-TGTT
*
378783 TTAGAAATAAAA-CC
64 TTAGAAATAAAATCA
378797 GAGGTTGGAGTATTCCCC
1 G-GGTTGGAGTA-TCCCC
378815 ATTATGAAAA
Statistics
Matches: 485, Mismatches: 71, Indels: 27
0.83 0.12 0.05
Matches are distributed among these distances:
78 12 0.02
79 462 0.95
80 11 0.02
ACGTcount: A:0.36, C:0.14, G:0.22, T:0.28
Consensus pattern (78 bp):
GGGTTGGAGTATCCCCTCAAAAATAACGGGTTGGAGTATCCCCGATTGTGAAAAATCGATGTTTT
AGAAATAAAATCA
Found at i:378776 original size:237 final size:235
Alignment explanation
Indices: 378157--378814 Score: 734
Period size: 237 Copynumber: 2.8 Consensus size: 235
378147 TATTTTGGAG
* * * * * * * *
378157 ATAAAACTGGGGTTGGAGTATCCCCTTAGAACTAACAAGGTTGGAGTATCTCTGATTGTGAAAAA
1 ATAAAAC-CGGGTTGAAGTATCCCCTCAAAAATAACAGGGTTGGAGTATCCCCGATTGTGAAAAA
* * * * *
378222 TCGGTGTTTTAGAAATAAAATCAGGGTTGGAGTATCCCTTAAAAAATAACAAGGTTAGAGTATCC
65 TTGGTGTTTTGGAAATAAAATCAGGGTTGAAGTATCCC-TCAAAAATAACAGGGTTAGAGTATCC
* * * * * * * *
378287 CCGATTGTGAAAAATCGATATTTTGGAAGTAAAATTGAGGTTGGAGTATCCCCTCAGAAATAACT
129 CCGATTGTGAAAAATTGATATTTTAGAAATAAAATCGAGGCTGAAGTATCCCCTCAAAAATAACG
* *
378352 GGGTTAGAGTATCCCCGATTGTGAAAAATCGATATTTGGAAA
194 GGGTTAGAGTATCCCCGATTATGAAAAATCGATATTTGAAAA
* *
378394 ATAAAACCGAGGTT-AGAGTATCCCCTCGAAAATAACAGGGTTGGAGTATCCTCGATTGTGAAAA
1 ATAAAACCG-GGTTGA-AGTATCCCCTCAAAAATAACAGGGTTGGAGTATCCCCGATTGTGAAAA
* * * * * * *
378458 ATTAGTGTTTTGAAAATAAAATCGGGGTT-AGAGTATCTCTTCGAAAATAACAGGATTGGAGTAT
64 ATTGGTGTTTTGGAAATAAAATCAGGGTTGA-AGTATC-CCTCAAAAATAACAGGGTTAGAGTAT
* * *
378522 CCCCGATTATGAAAAATTGATATTTTAAAAATAAAATCGGGGCTGAAGTATCCCCTCAAAAATAA
127 CCCCGATTGTGAAAAATTGATATTTTAGAAATAAAATCGAGGCTGAAGTATCCCCTCAAAAATAA
* * * *
378587 CGGGGTTGGAGTATCCTCGATTATGAAAAATCGATGTTTTAAAA
192 CGGGGTTAGAGTATCCCCGATTATGAAAAATCGATATTTGAAAA
*
378631 ATAAAGCCAGGGTTGAAGTATCCCCTCAAAAATAAC-GGGATTGGAGTATCCCCGATTGTGAAAA
1 ATAAAACC-GGGTTGAAGTATCCCCTCAAAAATAACAGGG-TTGGAGTATCCCCGATTGTGAAAA
* *
378695 ATTGGTATTTTGGAAATAAAA-CTAGGGTTGAAGTATTCCCTCAAAAATAAC-GGTGTTAAAGTA
64 ATTGGTGTTTTGGAAATAAAATC-AGGGTTGAAGTA-TCCCTCAAAAATAACAGG-GTTAGAGTA
* * * * *
378758 TCCCCAATTGTGAAAAATT-AGTGTTTTAGAAATAAAACCGAGGTTGGAGTATTCCCC
126 TCCCCGATTGTGAAAAATTGA-TATTTTAGAAATAAAATCGAGGCTGAAGTA-TCCCC
378815 ATTATGAAAA
Statistics
Matches: 349, Mismatches: 59, Indels: 25
0.81 0.14 0.06
Matches are distributed among these distances:
236 8 0.02
237 330 0.95
238 11 0.03
ACGTcount: A:0.36, C:0.14, G:0.22, T:0.28
Consensus pattern (235 bp):
ATAAAACCGGGTTGAAGTATCCCCTCAAAAATAACAGGGTTGGAGTATCCCCGATTGTGAAAAAT
TGGTGTTTTGGAAATAAAATCAGGGTTGAAGTATCCCTCAAAAATAACAGGGTTAGAGTATCCCC
GATTGTGAAAAATTGATATTTTAGAAATAAAATCGAGGCTGAAGTATCCCCTCAAAAATAACGGG
GTTAGAGTATCCCCGATTATGAAAAATCGATATTTGAAAA
Found at i:378823 original size:51 final size:51
Alignment explanation
Indices: 378754--378853 Score: 130
Period size: 51 Copynumber: 2.0 Consensus size: 51
378744 ACGGTGTTAA
* * * *
378754 AGTATCCCCAATTGTGAAAAATTAGTGTTTTAGAAATAAAACCGAGGTTGG
1 AGTATCCCCAATTATGAAAAATCAATATTTTAGAAATAAAACCGAGGTTGG
* *
378805 AGTATTCCCC-ATTATGAAAAATCAATATTTTGGAAATAAAATCGAGGTT
1 AGTA-TCCCCAATTATGAAAAATCAATATTTTAGAAATAAAACCGAGGTT
378854 AGAGCGTCCC
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
51 37 0.88
52 5 0.12
ACGTcount: A:0.39, C:0.12, G:0.18, T:0.31
Consensus pattern (51 bp):
AGTATCCCCAATTATGAAAAATCAATATTTTAGAAATAAAACCGAGGTTGG
Found at i:378824 original size:130 final size:131
Alignment explanation
Indices: 378671--378943 Score: 304
Period size: 130 Copynumber: 2.1 Consensus size: 131
378661 AATAACGGGA
* *** * *
378671 TTGGAGTA-TCCCCGATTGTGAAAAATTGGTATTTTGGAAATAAAACTAG-GGTT-GAAGTATTC
1 TTGGAGTATTCCCCGATTATGAAAAATCAATATTTTGGAAATAAAA-TAGAGGTTAG-AGCATCC
* *
378733 CCTCAAAAATAACGGTGTTAAAGTATCCCCAATTGTGAAAAATTAG-TGTTTTAGAAATAAAACC
64 CCTCAAAAATAACGGGGTTAAAGTATCCACAATTGTGAAAAA-TAGATGTTTTAGAAATAAAACC
378797 GAGG
128 GAGG
* *
378801 TTGGAGTATTCCCC-ATTATGAAAAATCAATATTTTGGAAATAAAATCGAGGTTAGAGCGTCCCC
1 TTGGAGTATTCCCCGATTATGAAAAATCAATATTTTGGAAATAAAATAGAGGTTAGAGCATCCCC
* ** ** * * * *
378865 TCAAAAATAATGGGGTTGGAGTATCCATGATTGTGAAAAATCGATGTTTTGGAAATAAAATCGGG
66 TCAAAAATAACGGGGTTAAAGTATCCACAATTGTGAAAAATAGATGTTTTAGAAATAAAACCGAG
378930 G
131 G
*
378931 TTAGAGTATTCCC
1 TTGGAGTATTCCC
378944 TCAGAAAAAT
Statistics
Matches: 119, Mismatches: 20, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
129 4 0.03
130 109 0.92
131 6 0.05
ACGTcount: A:0.36, C:0.13, G:0.22, T:0.30
Consensus pattern (131 bp):
TTGGAGTATTCCCCGATTATGAAAAATCAATATTTTGGAAATAAAATAGAGGTTAGAGCATCCCC
TCAAAAATAACGGGGTTAAAGTATCCACAATTGTGAAAAATAGATGTTTTAGAAATAAAACCGAG
G
Found at i:378904 original size:288 final size:286
Alignment explanation
Indices: 378500--379097 Score: 726
Period size: 288 Copynumber: 2.1 Consensus size: 286
378490 GTATCTCTTC
* ** *
378500 GAAAATAA-CAGGATTGGAGTA-TCCCCGATTATGAAAAATTGATATTTTAAAAATAAAATCGGG
1 GAAAAAAACCAGG-TTGGAGTATTCCCCGATTATGAAAAATCAATATTTTAAAAATAAAATCGAG
*
378563 GCTGAAGTATCCCCTCAAAAATAACGGGGTTGGAGTATCCTCGATTATGAAAAATCGATGTTTTA
65 GCTGAAGCATCCCCTCAAAAATAACGGGGTTGGAGTATCCTCGATTATGAAAAATCGATGTTTTA
* *
378628 AAAATAAAGCCAGGGTT-GAAGTATCCCCTCAAAAATAACGGGATTGGAGTATCCCCGATTGTGA
130 AAAATAAAACCAGGGTTAG-AGTATCCCCTCAAAAA-AACGGGATTGGAGTATCCCCGATTATGA
* *
378692 AAAATTGGTATTTTGGAAATAAAACTAGG-GTTGAAGTATTCCCTCAAAAATAAC-GGTGTTAAA
193 AAAATTGGTATCTTGGAAATAAAAC-AGGTGTTGAAGTATCCCCTCAAAAATAACAGG-GTTAAA
378755 GTATCCCCAATTGTGAAAAATTAGTGTTTTA
256 GTATCCCCAATTGTGAAAAATTAGTGTTTTA
**
378786 GAAATAAAACCGAGGTTGGAGTATTCCCC-ATTATGAAAAATCAATATTTTGGAAATAAAATCGA
1 GAAA-AAAACC-AGGTTGGAGTATTCCCCGATTATGAAAAATCAATATTTTAAAAATAAAATCGA
* * * *
378850 GG-TTAGAGCGTCCCCTCAAAAATAATGGGGTTGGAGTATCCAT-GATTGTGAAAAATCGATGTT
64 GGCTGA-AGCATCCCCTCAAAAATAACGGGGTTGGAGTATCC-TCGATTATGAAAAATCGATGTT
** * * * * * *
378913 TTGGAAATAAAATCGGGGTTAGAGTATTCCCTCAGAAAAATGGGGTTGGAGTATCCCCGATTATG
127 TTAAAAATAAAACCAGGGTTAGAGTATCCCCTCAAAAAAACGGGATTGGAGTATCCCCGATTATG
* * * * * * **
378978 GAAAATTGGTGTCTTGGAAATAAAACCGGTGTTGGAGTATCCCCTCAGAAATATCAGGGTTGGAG
192 AAAAATTGGTATCTTGGAAATAAAACAGGTGTTGAAGTATCCCCTCAAAAATAACAGGGTTAAAG
* * *
379043 TATCCCCGATTGTGAAAAATTGGTGTTTTT
257 TATCCCCAATTGTGAAAAATTAGTGTTTTA
* *
379073 GAAAAAAATCAGGGTGAGAGTATTC
1 GAAAAAAACCAGGTTG-GAGTATTC
379098 TCGGTTATGG
Statistics
Matches: 266, Mismatches: 36, Indels: 20
0.83 0.11 0.06
Matches are distributed among these distances:
285 5 0.02
286 19 0.07
287 109 0.41
288 123 0.46
289 10 0.04
ACGTcount: A:0.36, C:0.13, G:0.23, T:0.28
Consensus pattern (286 bp):
GAAAAAAACCAGGTTGGAGTATTCCCCGATTATGAAAAATCAATATTTTAAAAATAAAATCGAGG
CTGAAGCATCCCCTCAAAAATAACGGGGTTGGAGTATCCTCGATTATGAAAAATCGATGTTTTAA
AAATAAAACCAGGGTTAGAGTATCCCCTCAAAAAAACGGGATTGGAGTATCCCCGATTATGAAAA
ATTGGTATCTTGGAAATAAAACAGGTGTTGAAGTATCCCCTCAAAAATAACAGGGTTAAAGTATC
CCCAATTGTGAAAAATTAGTGTTTTA
Found at i:379002 original size:78 final size:78
Alignment explanation
Indices: 378799--379095 Score: 328
Period size: 79 Copynumber: 3.8 Consensus size: 78
378789 ATAAAACCGA
* * * **
378799 GGTTGGAGTATTCCCC-ATTATGAAAAATCAATATTTTGGAAATAAAATCGAGGTTAGAGCGTCC
1 GGTTGGAGTA-TCCCCGATTATGAAAAATCGATGTTTTGGAAATAAAATCGGGGTTAGAGTATCC
*
378863 CCTCAAAAATAATGG
65 CCTCAGAAA-AATGG
** * *
378878 GGTTGGAGTATCCATGATTGTGAAAAATCGATGTTTTGGAAATAAAATCGGGGTTAGAGTATTCC
1 GGTTGGAGTATCCCCGATTATGAAAAATCGATGTTTTGGAAATAAAATCGGGGTTAGAGTATCCC
378943 CTCAGAAAAATGG
66 CTCAGAAAAATGG
* * * * * * *
378956 GGTTGGAGTATCCCCGATTATGGAAAATTGGTGTCTTGGAAATAAAACCGGTGTTGGAGTATCCC
1 GGTTGGAGTATCCCCGATTATGAAAAATCGATGTTTTGGAAATAAAATCGGGGTTAGAGTATCCC
* *
379021 CTCAGAAATATCAG
66 CTCAGAAAAAT-GG
* * * * * *
379035 GGTTGGAGTATCCCCGATTGTGAAAAATTGGTGTTTTTGAAA-AAAATCAGGGTGAGAGTAT
1 GGTTGGAGTATCCCCGATTATGAAAAATCGATGTTTTGGAAATAAAATCGGGGTTAGAGTAT
379096 TCTCGGTTAT
Statistics
Matches: 184, Mismatches: 32, Indels: 5
0.83 0.14 0.02
Matches are distributed among these distances:
78 86 0.47
79 98 0.53
ACGTcount: A:0.33, C:0.13, G:0.26, T:0.29
Consensus pattern (78 bp):
GGTTGGAGTATCCCCGATTATGAAAAATCGATGTTTTGGAAATAAAATCGGGGTTAGAGTATCCC
CTCAGAAAAATGG
Found at i:379024 original size:157 final size:156
Alignment explanation
Indices: 378799--379097 Score: 370
Period size: 157 Copynumber: 1.9 Consensus size: 156
378789 ATAAAACCGA
* * *
378799 GGTTGGAGTATTCCCCATTATGAAAAATCAATATTTTGGAAATAAAATCGAGGTTAGAGCGTCCC
1 GGTTGGAGTATTCCCCATTATGAAAAATCAATATCTTGGAAATAAAACCGAGGTTAGAGCATCCC
* * *
378864 CTCAAAAATAAT-GGGGTTGGAGTATCCATGATTGTGAAAAATCGATGTTTTGGAAATAAAATCG
66 CTCAAAAAT-ATCAGGGTTGGAGTATCCACGATTGTGAAAAATCGATGTTTTGGAAA-AAAATCA
*
378928 GGGTTAGAGTATTCCCTCAGAAAAATGG
129 GGGTGAGAGTATTCCCTCAGAAAAATGG
* *** * * *
378956 GGTTGGAGTA-TCCCCGATTATGGAAAATTGGTGTCTTGGAAATAAAACCG-GTGTTGGAGTATC
1 GGTTGGAGTATTCCCC-ATTATGAAAAATCAATATCTTGGAAATAAAACCGAG-GTTAGAGCATC
* * * * *
379019 CCCTCAGAAATATCAGGGTTGGAGTATCCCCGATTGTGAAAAATTGGTGTTTTTGAAAAAAATCA
64 CCCTCAAAAATATCAGGGTTGGAGTATCCACGATTGTGAAAAATCGATGTTTTGGAAAAAAATCA
379084 GGGTGAGAGTATTC
129 GGGTGAGAGTATTC
379098 TCGGTTATGG
Statistics
Matches: 120, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
156 27 0.22
157 93 0.77
ACGTcount: A:0.32, C:0.13, G:0.25, T:0.29
Consensus pattern (156 bp):
GGTTGGAGTATTCCCCATTATGAAAAATCAATATCTTGGAAATAAAACCGAGGTTAGAGCATCCC
CTCAAAAATATCAGGGTTGGAGTATCCACGATTGTGAAAAATCGATGTTTTGGAAAAAAATCAGG
GTGAGAGTATTCCCTCAGAAAAATGG
Found at i:382598 original size:153 final size:153
Alignment explanation
Indices: 382364--382775 Score: 508
Period size: 154 Copynumber: 2.7 Consensus size: 153
382354 TATCTAATAA
* * * *
382364 GATTTTTATAAATTTGTAATTTACAAAATTCTTCAAATATTATTGTTTAATTCAAATTAAATCAG
1 GATTTTTCTAAATTTATAATTTACAAAATTCTTCAAATATTATTGTTTAATTCATATTAAA-CAA
** *
382429 TTTGAAAAAATTCAATTTATTTTATGAGTTTTGGAAATTTTCT-TATTATCGAAATGTGGAGTTT
65 TTTTTAAAAATTCAATTTATTTTATGAGTTTT-GAAATTTTCTCTATTATCGAAATGAGGAGTTT
* *
382493 TCTACTCCTTAAATTTCC-CTGGAAC
129 TATACTCCGTAAATTTCCTC-GGAAC
*
382518 GATTTTTCTAAATTTATAATTT-CAAAATTCTTCAAATATTATTGTTTAATTTATATTAAACCAA
1 GATTTTTCTAAATTTATAATTTACAAAATTCTTCAAATATTATTGTTTAATTCATATTAAA-CAA
* * * *
382582 TTTTTAAAAATTCAATTAATGTTATGAGTTTTAGAATTTTTTTCTATTATCGAAATGAGGAGTTT
65 TTTTTAAAAATTCAATTTATTTTATGAGTTTT-GAAATTTTCTCTATTATCGAAATGAGGAGTTT
* ** *
382647 TATATTCCGTAAATTTTTTCGGAAG
129 TATACTCCGTAAATTTCCTCGGAAC
* * * **
382672 GATTTTTCTAAATTTATAATTTCCAAAATTCTTCAAATATTGTTGTCTAA-TCAGTATTAAATTA
1 GATTTTTCTAAATTTATAATTTACAAAATTCTTCAAATATTATTGTTTAATTCA-TATTAAACAA
* * *
382736 TTTTTGAAAATTTAATTTATTTTATGAGTTTTAAAATTTT
65 TTTTTAAAAATTCAATTTATTTTATGAGTTTTGAAATTTT
382776 TCTTGTTACC
Statistics
Matches: 223, Mismatches: 31, Indels: 9
0.85 0.12 0.03
Matches are distributed among these distances:
153 80 0.36
154 110 0.49
155 33 0.15
ACGTcount: A:0.34, C:0.08, G:0.09, T:0.48
Consensus pattern (153 bp):
GATTTTTCTAAATTTATAATTTACAAAATTCTTCAAATATTATTGTTTAATTCATATTAAACAAT
TTTTAAAAATTCAATTTATTTTATGAGTTTTGAAATTTTCTCTATTATCGAAATGAGGAGTTTTA
TACTCCGTAAATTTCCTCGGAAC
Found at i:384024 original size:21 final size:21
Alignment explanation
Indices: 383983--384025 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
383973 ATCATTCTTT
* *
383983 TGATTTTTGATGTGATTTTTA
1 TGATTTTTCATGTGATGTTTA
384004 TGATTTTTCATGAT-ATGTTTA
1 TGATTTTTCATG-TGATGTTTA
384025 T
1 T
384026 TGCCAATATA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 18 0.95
22 1 0.05
ACGTcount: A:0.21, C:0.02, G:0.16, T:0.60
Consensus pattern (21 bp):
TGATTTTTCATGTGATGTTTA
Found at i:385176 original size:19 final size:20
Alignment explanation
Indices: 385134--385181 Score: 71
Period size: 19 Copynumber: 2.5 Consensus size: 20
385124 TCTTGAATGG
385134 ATCGATACATATTACTTAGT
1 ATCGATACATATTACTTAGT
* *
385154 ATCGATACATGTT-CTTTGT
1 ATCGATACATATTACTTAGT
385173 ATCGATACA
1 ATCGATACA
385182 CCATAAAATG
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
19 14 0.54
20 12 0.46
ACGTcount: A:0.31, C:0.17, G:0.12, T:0.40
Consensus pattern (20 bp):
ATCGATACATATTACTTAGT
Found at i:385303 original size:32 final size:32
Alignment explanation
Indices: 385249--385316 Score: 91
Period size: 32 Copynumber: 2.1 Consensus size: 32
385239 ATACATGGTA
* *
385249 AATTTTATCGATAAATTAAGCCCAACAGCTAT
1 AATTATATCGATAAATTAAGCCCAACAGCTAG
* * *
385281 AATTATATCGATACATTGAGCCCAACGGCTAG
1 AATTATATCGATAAATTAAGCCCAACAGCTAG
385313 AATT
1 AATT
385317 TCAAATGCAT
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.38, C:0.19, G:0.13, T:0.29
Consensus pattern (32 bp):
AATTATATCGATAAATTAAGCCCAACAGCTAG
Found at i:386869 original size:13 final size:13
Alignment explanation
Indices: 386851--386876 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
386841 TACAGCAAGT
386851 ATGTATCGATACA
1 ATGTATCGATACA
386864 ATGTATCGATACA
1 ATGTATCGATACA
386877 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:390347 original size:15 final size:15
Alignment explanation
Indices: 390327--390357 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
390317 TAAAAATGTC
*
390327 CAAAATGAGGAAGCT
1 CAAAATGAAGAAGCT
390342 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
390357 C
1 C
390358 CAAACAAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.16, G:0.23, T:0.13
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:392453 original size:20 final size:20
Alignment explanation
Indices: 392374--392453 Score: 79
Period size: 20 Copynumber: 3.8 Consensus size: 20
392364 AATGTCCAAA
*
392374 ATGTATCGATACATGTTTCT
1 ATGTATCGATACATTTTTCT
* *
392394 GTGTATCGATACATCTGGAAATTCT
1 ATGTATCGATACAT-T----TTTCT
392419 ATGTATCGATACATTTTTCT
1 ATGTATCGATACATTTTTCT
*
392439 TTGTATCGATACATT
1 ATGTATCGATACATT
392454 GTATCGATAC
Statistics
Matches: 49, Mismatches: 6, Indels: 10
0.75 0.09 0.15
Matches are distributed among these distances:
20 31 0.63
24 1 0.02
25 17 0.35
ACGTcount: A:0.26, C:0.15, G:0.15, T:0.44
Consensus pattern (20 bp):
ATGTATCGATACATTTTTCT
Found at i:392457 original size:13 final size:13
Alignment explanation
Indices: 392439--392477 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
392429 ACATTTTTCT
392439 TTGTATCGATACA
1 TTGTATCGATACA
392452 TTGTATCGATACA
1 TTGTATCGATACA
*
392465 CTGTATCGATACA
1 TTGTATCGATACA
392478 GGGTGATTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:392625 original size:21 final size:21
Alignment explanation
Indices: 392601--392647 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 21
392591 AAATCTTTTG
392601 CAAAAT-ACTT-GTTTTTCACTT
1 CAAAATAACTTCGTTTTTCA--T
392622 C-AAATAACTTCGTTTTTCAT
1 CAAAATAACTTCGTTTTTCAT
392642 CAAAAT
1 CAAAAT
392648 CAGCATCAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
20 6 0.26
21 9 0.39
22 8 0.35
ACGTcount: A:0.34, C:0.19, G:0.04, T:0.43
Consensus pattern (21 bp):
CAAAATAACTTCGTTTTTCAT
Found at i:392644 original size:20 final size:19
Alignment explanation
Indices: 392603--392645 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 19
392593 ATCTTTTGCA
392603 AAATACTTGTTTTTCACTTC
1 AAATACTTGTTTTTCAC-TC
392623 AAATAACTTCGTTTTTCA-TC
1 AAAT-ACTT-GTTTTTCACTC
392643 AAA
1 AAA
392646 ATCAGCATCA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
20 9 0.43
21 4 0.19
22 8 0.38
ACGTcount: A:0.33, C:0.19, G:0.05, T:0.44
Consensus pattern (19 bp):
AAATACTTGTTTTTCACTC
Found at i:395042 original size:13 final size:13
Alignment explanation
Indices: 395024--395049 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
395014 TACAGCAAGT
395024 ATGTATCGATACA
1 ATGTATCGATACA
395037 ATGTATCGATACA
1 ATGTATCGATACA
395050 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:396028 original size:52 final size:52
Alignment explanation
Indices: 395879--396280 Score: 274
Period size: 52 Copynumber: 7.5 Consensus size: 52
395869 GAATGATAAC
* *
395879 GGTGCCAATATGCTGATTCAAGGCTAGTGATATTAGG-CTTAAAGATGACAAA
1 GGTGCCAATATGCTGATTCAAGGCCAGAGATATT-GGACTTAAAGATGACAAA
* * * * *
395931 GGCGCCAATGTGTTGTTGATTCAAGGCCA-ACGACATTGGATTTAAAGATGACAAA
1 GGTGCCAA--T-ATGCTGATTCAAGGCCAGA-GATATTGGACTTAAAGATGACAAA
* * * *
395986 GGTGCCAATATGCTAATTCAAGGCCAGAGATATT-GAGCTTAAAAAGGAAAAA
1 GGTGCCAATATGCTGATTCAAGGCCAGAGATATTGGA-CTTAAAGATGACAAA
* * * * * *
396038 GGTGTCAATCTACTGATTCAAGGCCAGCGACATTGGACTTAAAGATCAGAAGAATGATAAA
1 GGTGCCAATATGCTGATTCAAGGCCAGAGATATTGGAC-T-----T-A-AAG-ATGACAAA
* * * * *
396099 GGTGCCAATATACTGATTCAAGGCTAGCA-ATATTGGGCTTACAGATAACAAA
1 GGTGCCAATATGCTGATTCAAGGCCAG-AGATATTGGACTTAAAGATGACAAA
* * * * * * *
396151 GGTGCTAATGTGCCGATTCAAGGCCAGTGACATTGGACTTAAAGGTAACAAA
1 GGTGCCAATATGCTGATTCAAGGCCAGAGATATTGGACTTAAAGATGACAAA
* * ** * *
396203 GGTGCCAATATGTTGATTTAAGGCCATCGATATTGGACTT-AAGAAAGAAAAA
1 GGTGCCAATATGCTGATTCAAGGCCAGAGATATTGGACTTAAAG-ATGACAAA
* * *
396255 TGTACCATTATGCTGATTCAAGGCCA
1 GGTGCCAATATGCTGATTCAAGGCCA
396281 ACAACATTGG
Statistics
Matches: 269, Mismatches: 61, Indels: 40
0.73 0.16 0.11
Matches are distributed among these distances:
51 5 0.02
52 170 0.63
53 7 0.03
54 4 0.01
55 41 0.15
58 1 0.00
59 1 0.00
60 3 0.01
61 37 0.14
ACGTcount: A:0.36, C:0.16, G:0.24, T:0.25
Consensus pattern (52 bp):
GGTGCCAATATGCTGATTCAAGGCCAGAGATATTGGACTTAAAGATGACAAA
Found at i:396183 original size:113 final size:109
Alignment explanation
Indices: 395801--396194 Score: 397
Period size: 113 Copynumber: 3.6 Consensus size: 109
395791 TAAGCTTTCA
* * **
395801 GGCTTAAAGATGACAAAGGTGCCAATGTGCTAATTCAAGGCCAGCGACATTGGACGAAAAGGTGA
1 GGCTTAAAGATAACAAAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAA-GT--
* * *
395866 AAAGAATGATAACGGTGCCAATATGCTGATTCAAGGCTAGTGATATTA
63 AAAGAATGATAAAGGTGCCAATATGCTGATTCAAGGCTAG-AATATTG
* * * *
395914 GGCTTAAAGATGACAAAGGCGCCAATGTGTTGTTGATTCAAGGCCAACGACATTGGA-TT----T
1 GGCTTAAAGATAACAAAGGTGCCAA--TG-TGCTGATTCAAGGCCAGCGACATTGGACTTAAAGT
* * *
395974 AAAG-ATGACAAAGGTGCCAATATGCTAATTCAAGGCCAGAGATATTG
63 AAAGAATGATAAAGGTGCCAATATGCTGATTCAAGGCTAGA-ATATTG
* * * * * *
396021 AGCTTAAAAAGGAA-AAAGGTGTCAATCTACTGATTCAAGGCCAGCGACATTGGACTTAAAGATC
1 GGCTTAAAGA-TAACAAAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAG-T-
*
396085 AGAAGAATGATAAAGGTGCCAATATACTGATTCAAGGCTAGCAATATTG
63 A-AAGAATGATAAAGGTGCCAATATGCTGATTCAAGGCTAG-AATATTG
* * * *
396134 GGCTTACAGATAACAAAGGTGCTAATGTGCCGATTCAAGGCCAGTGACATTGGACTTAAAG
1 GGCTTAAAGATAACAAAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAG
396195 GTAACAAAGG
Statistics
Matches: 229, Mismatches: 36, Indels: 32
0.77 0.12 0.11
Matches are distributed among these distances:
104 24 0.10
105 3 0.01
107 53 0.23
108 5 0.02
110 2 0.01
111 1 0.00
112 5 0.02
113 109 0.48
114 1 0.00
115 2 0.01
116 24 0.10
ACGTcount: A:0.36, C:0.16, G:0.25, T:0.23
Consensus pattern (109 bp):
GGCTTAAAGATAACAAAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGTAAA
GAATGATAAAGGTGCCAATATGCTGATTCAAGGCTAGAATATTG
Found at i:396290 original size:217 final size:219
Alignment explanation
Indices: 395815--396295 Score: 565
Period size: 217 Copynumber: 2.2 Consensus size: 219
395805 TAAAGATGAC
* * * ** * * *
395815 AAAGGTGCCAATGTGCTAATTCAAGGCCAGCGACATTGGACGAAAAGGTGAAAAGAATGATAACG
1 AAAGGTACCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATCAAAAGAATGATAAAG
* ** *
395880 GTGCCAATATGCTGATTCAAGGCTAGTGATATTAGGCTTAAAGATGACAAAGGCGCCAATGTGTT
66 GTGCCAATATACTGATTCAAGGCTAGCAATATTAGGCTTAAAGATAACAAAGGCGCCAA-GTGTT
** * *
395945 GTTGATTCAAGGCCAACGACATTGGATTTAAAGATGACAAAGGTGCCAATATGCTAATTCAAGGC
130 GCCGATTCAAGGCCAACGACATTGGACTTAAAGATAACAAAGGTGCCAATATGCTAATTCAAGGC
396010 CAGAGATATTGAGCTTAAAAAGGAA
195 CAGAGATATTGAGCTTAAAAAGGAA
** * * *
396035 AAAGGTGTCAATCTACTGATTCAAGGCCAGCGACATTGGACTTAAAGATCAGAAGAATGATAAAG
1 AAAGGTACCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATCAAAAGAATGATAAAG
* * * *
396100 GTGCCAATATACTGATTCAAGGCTAGCAATATTGGGCTTACAGATAACAAAGGTGCTAA-TG-TG
66 GTGCCAATATACTGATTCAAGGCTAGCAATATTAGGCTTAAAGATAACAAAGGCGCCAAGTGTTG
** * * * *
396163 CCGATTCAAGGCCAGTGACATTGGACTTAAAGGTAACAAAGGTGCCAATATGTTGATTTAAGGCC
131 CCGATTCAAGGCCAACGACATTGGACTTAAAGATAACAAAGGTGCCAATATGCTAATTCAAGGCC
**
396228 ATCGATATTG-GACTTAAGAAA-GAA
196 AGAGATATTGAG-CTTAA-AAAGGAA
* * * * *
396252 AAATGTACCATTATGCTGATTCAAGGCCAACAACATTGGGCTTA
1 AAAGGTACCAATATGCTGATTCAAGGCCAGCGACATTGGACTTA
396296 GAAGGAGATG
Statistics
Matches: 220, Mismatches: 39, Indels: 7
0.83 0.15 0.03
Matches are distributed among these distances:
216 1 0.00
217 108 0.49
218 5 0.02
220 106 0.48
ACGTcount: A:0.36, C:0.16, G:0.24, T:0.24
Consensus pattern (219 bp):
AAAGGTACCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATCAAAAGAATGATAAAG
GTGCCAATATACTGATTCAAGGCTAGCAATATTAGGCTTAAAGATAACAAAGGCGCCAAGTGTTG
CCGATTCAAGGCCAACGACATTGGACTTAAAGATAACAAAGGTGCCAATATGCTAATTCAAGGCC
AGAGATATTGAGCTTAAAAAGGAA
Found at i:396384 original size:32 final size:32
Alignment explanation
Indices: 396288--396684 Score: 373
Period size: 32 Copynumber: 12.6 Consensus size: 32
396278 CCAACAACAT
* *
396288 TGGGC-TTAGAAG-GAGATGCCACCAACTTGTG
1 TGGGCTTTAGAAGAG-GTTGCCACCGACTTGTG
* * * *
396319 TGGGTTTTAGAAGA-GATGCCACTGACTTATG
1 TGGGCTTTAGAAGAGGTTGCCACCGACTTGTG
* *
396350 TGGGCTTTAGAA-AGGGTTACCACCGACTTCTG
1 TGGGCTTTAGAAGA-GGTTGCCACCGACTTGTG
* * *
396382 TGGGCTTTAGAAGAGGTTACTAGC-AGCTTGTG
1 TGGGCTTTAGAAGAGGTTGCCACCGA-CTTGTG
** * * *
396414 TGATCTTTAAAAGAGGTTGCCACCAACTTTTG
1 TGGGCTTTAGAAGAGGTTGCCACCGACTTGTG
* * *
396446 TGCGCTTTA-AAAAGGGTTGCCATCGACTTGTG
1 TGGGCTTTAGAAGA-GGTTGCCACCGACTTGTG
* * *
396478 TGAGCTTTAGAAG-GGTTGCCATCGACTTGTT
1 TGGGCTTTAGAAGAGGTTGCCACCGACTTGTG
* **
396509 TGGGCTCTGAGAAG-GGTTGCCACTAACTTGTG
1 TGGGCT-TTAGAAGAGGTTGCCACCGACTTGTG
* *
396541 TGGGCTTTTGAAGAGGTTGCCATCGACTTGTG
1 TGGGCTTTAGAAGAGGTTGCCACCGACTTGTG
* **
396573 TGGGCTTTTGAAGAGGTTGCCATTGACTTGTG
1 TGGGCTTTAGAAGAGGTTGCCACCGACTTGTG
* *
396605 TGGGCTTTGGAAGAGGTTGCCACCAACTTGTG
1 TGGGCTTTAGAAGAGGTTGCCACCGACTTGTG
* *
396637 TGGGCTTTAGAAGAGGTTACCACTGACTTGTG
1 TGGGCTTTAGAAGAGGTTGCCACCGACTTGTG
396669 TGGGCTTT-GAA-AGGTT
1 TGGGCTTTAGAAGAGGTT
396685 ACTTTACTAA
Statistics
Matches: 307, Mismatches: 48, Indels: 23
0.81 0.13 0.06
Matches are distributed among these distances:
30 6 0.02
31 63 0.21
32 234 0.76
33 4 0.01
ACGTcount: A:0.21, C:0.16, G:0.31, T:0.31
Consensus pattern (32 bp):
TGGGCTTTAGAAGAGGTTGCCACCGACTTGTG
Found at i:397310 original size:26 final size:25
Alignment explanation
Indices: 397274--397326 Score: 97
Period size: 26 Copynumber: 2.1 Consensus size: 25
397264 CAGCTCTTGC
397274 TTGGAGGGTATTTAAGTGTGGAAAGG
1 TTGGAGGGTATTTAAGTGT-GAAAGG
397300 TTGGAGGGTATTTAAGTGTGAAAGG
1 TTGGAGGGTATTTAAGTGTGAAAGG
397325 TT
1 TT
397327 CATGACCTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 8 0.30
26 19 0.70
ACGTcount: A:0.26, C:0.00, G:0.40, T:0.34
Consensus pattern (25 bp):
TTGGAGGGTATTTAAGTGTGAAAGG
Found at i:403841 original size:13 final size:13
Alignment explanation
Indices: 403823--403848 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
403813 AATTTTTTGG
403823 TGTATCGATACAT
1 TGTATCGATACAT
403836 TGTATCGATACAT
1 TGTATCGATACAT
403849 ACTTGGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:406420 original size:13 final size:13
Alignment explanation
Indices: 406402--406437 Score: 54
Period size: 13 Copynumber: 2.8 Consensus size: 13
406392 ATAATCCCCC
*
406402 TGTATTGATACAG
1 TGTATTGATACAA
406415 TGTATTGATACAA
1 TGTATTGATACAA
*
406428 TGTATCGATA
1 TGTATTGATA
406438 TATTGAATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.33, C:0.08, G:0.19, T:0.39
Consensus pattern (13 bp):
TGTATTGATACAA
Found at i:412228 original size:13 final size:13
Alignment explanation
Indices: 412210--412235 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
412200 AATTTTTTGG
412210 TGTATCGATACAT
1 TGTATCGATACAT
412223 TGTATCGATACAT
1 TGTATCGATACAT
412236 ACTTGGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:412358 original size:20 final size:20
Alignment explanation
Indices: 412306--412360 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 20
412296 CATATTTTTC
*
412306 ATGTATCGATACATTGCAAT
1 ATGTATCGATACTTTGCAAT
412326 ATGTATCGATACTTTG-AATT
1 ATGTATCGATACTTTGCAA-T
*
412346 GTGTATCGATACTTT
1 ATGTATCGATACTTT
412361 TAAGGGTTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
19 2 0.06
20 30 0.94
ACGTcount: A:0.29, C:0.13, G:0.16, T:0.42
Consensus pattern (20 bp):
ATGTATCGATACTTTGCAAT
Found at i:413870 original size:20 final size:20
Alignment explanation
Indices: 413799--413876 Score: 75
Period size: 20 Copynumber: 3.6 Consensus size: 20
413789 AAAGTCCAAA
*
413799 ATGTATCGATACATGTTTCT
1 ATGTATCGATACATTTTTCT
* *
413819 GTGTATCGATACATTTGGAAATTCA
1 ATGTATCGATACATTT-----TTCT
413844 ATGTATCGATACATTTTTCT
1 ATGTATCGATACATTTTTCT
*
413864 TTGTATCGATACA
1 ATGTATCGATACA
413877 CTGTATCGAT
Statistics
Matches: 47, Mismatches: 6, Indels: 10
0.75 0.10 0.16
Matches are distributed among these distances:
20 29 0.62
25 18 0.38
ACGTcount: A:0.28, C:0.14, G:0.15, T:0.42
Consensus pattern (20 bp):
ATGTATCGATACATTTTTCT
Found at i:413883 original size:13 final size:13
Alignment explanation
Indices: 413865--413889 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
413855 CATTTTTCTT
413865 TGTATCGATACAC
1 TGTATCGATACAC
413878 TGTATCGATACA
1 TGTATCGATACA
413890 GGGGGATCAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAC
Found at i:416459 original size:13 final size:13
Alignment explanation
Indices: 416441--416466 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
416431 TACACCAAGT
416441 ATGTATCGATACA
1 ATGTATCGATACA
416454 ATGTATCGATACA
1 ATGTATCGATACA
416467 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:416464 original size:32 final size:33
Alignment explanation
Indices: 416423--416486 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 33
416413 TAGCCAAACT
* **
416423 TGTATCGATACACCAAGTA-TGTATCGATACAA
1 TGTATCGATACACAAAAAATTGTATCGATACAA
416455 TGTATCGATACACAAAAAATTGTATCGATACA
1 TGTATCGATACACAAAAAATTGTATCGATACA
416487 TTGGCTTGTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 16 0.57
33 12 0.43
ACGTcount: A:0.41, C:0.17, G:0.14, T:0.28
Consensus pattern (33 bp):
TGTATCGATACACAAAAAATTGTATCGATACAA
Found at i:420302 original size:11 final size:11
Alignment explanation
Indices: 420286--420310 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
420276 TATAATGTAC
420286 AATTCAATCAA
1 AATTCAATCAA
420297 AATTCAATCAA
1 AATTCAATCAA
420308 AAT
1 AAT
420311 CATTCAAGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.56, C:0.16, G:0.00, T:0.28
Consensus pattern (11 bp):
AATTCAATCAA
Found at i:428057 original size:13 final size:12
Alignment explanation
Indices: 428029--428083 Score: 58
Period size: 12 Copynumber: 4.5 Consensus size: 12
428019 AGGTTCAACT
* *
428029 AAAAAAAAAGAA
1 AAAAAAAGAGAG
428041 AAAAAAATGAGAG
1 AAAAAAA-GAGAG
*
428054 -AAAAAAGGGAG
1 AAAAAAAGAGAG
428065 AAAGAAAAGAGAG
1 AAA-AAAAGAGAG
428078 AAAAAA
1 AAAAAA
428084 TAGAAACAAA
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
11 4 0.11
12 18 0.50
13 14 0.39
ACGTcount: A:0.76, C:0.00, G:0.22, T:0.02
Consensus pattern (12 bp):
AAAAAAAGAGAG
Found at i:428107 original size:13 final size:11
Alignment explanation
Indices: 428030--428107 Score: 59
Period size: 11 Copynumber: 6.6 Consensus size: 11
428020 GGTTCAACTA
428030 AAAAAAAAGA-
1 AAAAAAAAGAG
428040 AAAAAAAATGAG
1 AAAAAAAA-GAG
*
428052 AGAAAAAAGGGAG
1 A-AAAAAA-AGAG
*
428065 AAAGAAAAGAG
1 AAAAAAAAGAG
* *
428076 AGAAAAAATAG
1 AAAAAAAAGAG
428087 AAACAAAAAGGTAG
1 AAA-AAAAA-G-AG
428101 AAAAAAA
1 AAAAAAA
428108 TAAGACTAGC
Statistics
Matches: 53, Mismatches: 8, Indels: 11
0.74 0.11 0.15
Matches are distributed among these distances:
10 8 0.15
11 15 0.28
12 11 0.21
13 14 0.26
14 5 0.09
ACGTcount: A:0.74, C:0.01, G:0.21, T:0.04
Consensus pattern (11 bp):
AAAAAAAAGAG
Found at i:429914 original size:20 final size:21
Alignment explanation
Indices: 429878--429917 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
429868 TTACAAATTT
*
429878 CTTCATTTTTACTTCAAAATA
1 CTTCATTTTTACATCAAAATA
429899 CTTCATTTTT-CATCAAAAT
1 CTTCATTTTTACATCAAAAT
429918 CACCAACAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 8 0.44
21 10 0.56
ACGTcount: A:0.33, C:0.20, G:0.00, T:0.47
Consensus pattern (21 bp):
CTTCATTTTTACATCAAAATA
Found at i:435742 original size:32 final size:32
Alignment explanation
Indices: 435694--435754 Score: 104
Period size: 32 Copynumber: 1.9 Consensus size: 32
435684 GCTAATTATG
* *
435694 TATCGATAGAATACTTATGTATCGATACATTA
1 TATCGATACAACACTTATGTATCGATACATTA
435726 TATCGATACAACACTTATGTATCGATACA
1 TATCGATACAACACTTATGTATCGATACA
435755 AATCGTTGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
32 27 1.00
ACGTcount: A:0.38, C:0.16, G:0.11, T:0.34
Consensus pattern (32 bp):
TATCGATACAACACTTATGTATCGATACATTA
Found at i:435750 original size:19 final size:19
Alignment explanation
Indices: 435689--435755 Score: 74
Period size: 19 Copynumber: 3.8 Consensus size: 19
435679 CAGTAGCTAA
* *
435689 TTATGTATCGATAGAATAC
1 TTATGTATCGATACAACAC
435708 TTATGTATCGAT---ACA-
1 TTATGTATCGATACAACAC
435723 TTA--TATCGATACAACAC
1 TTATGTATCGATACAACAC
435740 TTATGTATCGATACAA
1 TTATGTATCGATACAA
435756 ATCGTTGAAT
Statistics
Matches: 41, Mismatches: 1, Indels: 12
0.76 0.02 0.22
Matches are distributed among these distances:
13 7 0.17
15 3 0.07
16 5 0.12
17 3 0.07
19 23 0.56
ACGTcount: A:0.37, C:0.15, G:0.12, T:0.36
Consensus pattern (19 bp):
TTATGTATCGATACAACAC
Found at i:437909 original size:25 final size:24
Alignment explanation
Indices: 437871--437934 Score: 83
Period size: 25 Copynumber: 2.6 Consensus size: 24
437861 AAATTTCCTT
*
437871 AAAAAAAAAGAAAAAAACAAAAACA
1 AAAAAAAAATAAAAAAA-AAAAACA
* *
437896 AAAAAAAAATAAAAAGAAAAAGCA
1 AAAAAAAAATAAAAAAAAAAAACA
437920 AAAAAAAACATAAAA
1 AAAAAAAA-ATAAAA
437935 TGAAAAAGAA
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
24 14 0.40
25 21 0.60
ACGTcount: A:0.86, C:0.06, G:0.05, T:0.03
Consensus pattern (24 bp):
AAAAAAAAATAAAAAAAAAAAACA
Found at i:437939 original size:25 final size:24
Alignment explanation
Indices: 437871--437946 Score: 93
Period size: 24 Copynumber: 3.2 Consensus size: 24
437861 AAATTTCCTT
* *
437871 AAAAAAAAAGAAAAAAACAAAAA-C
1 AAAAAAAAA-ATAAAAAGAAAAAGC
437895 AAAAAAAAAATAAAAAGAAAAAGC
1 AAAAAAAAAATAAAAAGAAAAAGC
*
437919 AAAAAAAAACATAAAATGAAAAAG-
1 AAAAAAAAA-ATAAAAAGAAAAAGC
437943 AAAA
1 AAAA
437947 GTATGGATAG
Statistics
Matches: 47, Mismatches: 3, Indels: 4
0.87 0.06 0.07
Matches are distributed among these distances:
23 11 0.23
24 23 0.49
25 13 0.28
ACGTcount: A:0.84, C:0.05, G:0.07, T:0.04
Consensus pattern (24 bp):
AAAAAAAAAATAAAAAGAAAAAGC
Found at i:437941 original size:1 final size:1
Alignment explanation
Indices: 437871--437927 Score: 51
Period size: 1 Copynumber: 57.0 Consensus size: 1
437861 AAATTTCCTT
* * * * * **
437871 AAAAAAAAAGAAAAAAACAAAAACAAAAAAAAAATAAAAAGAAAAAGCAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
437928 CATAAAATGA
Statistics
Matches: 43, Mismatches: 13, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
1 43 1.00
ACGTcount: A:0.88, C:0.05, G:0.05, T:0.02
Consensus pattern (1 bp):
A
Found at i:437941 original size:7 final size:6
Alignment explanation
Indices: 437883--437946 Score: 51
Period size: 6 Copynumber: 10.7 Consensus size: 6
437873 AAAAAAAGAA
* * * *
437883 AAAAAC AAAAAC AAAAA- AAAAAT AAAAAG AAAAAG CAAAAA- AAAACAT
1 AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG -AAAAAG AAAA-AG
*
437931 AAAATG AAAAAG AAAA
1 AAAAAG AAAAAG AAAA
437947 GTATGGATAG
Statistics
Matches: 50, Mismatches: 4, Indels: 8
0.81 0.06 0.13
Matches are distributed among these distances:
5 9 0.18
6 32 0.64
7 9 0.18
ACGTcount: A:0.83, C:0.06, G:0.06, T:0.05
Consensus pattern (6 bp):
AAAAAG
Found at i:438769 original size:114 final size:114
Alignment explanation
Indices: 438547--438826 Score: 266
Period size: 114 Copynumber: 2.5 Consensus size: 114
438537 TGATTTTTTG
* * * *
438547 AAAAAATTCATATTTTATACACCTCGATCCATTTGTGCCTAGGAAAATGGGGCACATATTCTATC
1 AAAAAATTCATATTTTATACACATCGATCCATTCGTACCTAGGAAAATGAGGCACATATTCTATC
* * * * *
438612 AGTTGTGAAATTTTTGAGCCAATAAATGTAAGATTTATATGATTTTCAA
66 AGTTGTAAAAATTTTGAGCCAACAAATGTAAGATTTACATGATTTGCAA
* * * **
438661 AAAAAATTCATGTTTTATACAACAT-TATCCATTCGTACCTAGGAAAATGATGCATGTATTCTAT
1 AAAAAATTCATATTTTATAC-ACATCGATCCATTCGTACCTAGGAAAATGAGGCACATATTCTAT
* * * *
438725 GAGTTTTAAAAATTTTGAGCCCAACAACAT-TAA-ATTTGCCTGATTTGC--
65 CAGTTGTAAAAATTTTGAG-CCAACAA-ATGTAAGATTTACATGATTTGCAA
* * * * * *
438773 AAAAAATTCTTATTTTATATA-ATCTGATCCATTCATGCCTAAGAAAATAAGGCA
1 AAAAAATTCATATTTTATACACATC-GATCCATTCGTACCTAGGAAAATGAGGCA
438827 TGTACCCTAT
Statistics
Matches: 134, Mismatches: 27, Indels: 12
0.77 0.16 0.07
Matches are distributed among these distances:
110 2 0.01
111 1 0.01
112 40 0.30
114 77 0.57
115 12 0.09
116 2 0.01
ACGTcount: A:0.37, C:0.15, G:0.13, T:0.35
Consensus pattern (114 bp):
AAAAAATTCATATTTTATACACATCGATCCATTCGTACCTAGGAAAATGAGGCACATATTCTATC
AGTTGTAAAAATTTTGAGCCAACAAATGTAAGATTTACATGATTTGCAA
Found at i:439529 original size:89 final size:88
Alignment explanation
Indices: 439366--439535 Score: 207
Period size: 88 Copynumber: 1.9 Consensus size: 88
439356 TTATGAATGC
* * * * *
439366 TTGCATTTGCATCGTTTCATGCACATATGCACCATTAGAGCACATTGGTATTTGCATCATTTCAT
1 TTGCATTTGCATCATTTCATGCACATATGCACCATTAGAGAACATTAGCATTTGCATCATTTCAA
439431 ATGCATTTGCCTCTTTATTGATGT
66 ATGCATTTG-CTCTTTATTGATGT
* * * * ** *
439455 TTGCATTTGCGTCATTTCATGCACATTTGCACC-TTAGATAACATTAGCATTTGCCTTGTTTGAA
1 TTGCATTTGCATCATTTCATGCACATATGCACCATTAGAGAACATTAGCATTTGCATCATTTCAA
439519 ATGCATTTTGCTCTTTA
66 ATGCA-TTTGCTCTTTA
439536 CTAATTCCTG
Statistics
Matches: 68, Mismatches: 12, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
88 34 0.50
89 34 0.50
ACGTcount: A:0.22, C:0.20, G:0.15, T:0.42
Consensus pattern (88 bp):
TTGCATTTGCATCATTTCATGCACATATGCACCATTAGAGAACATTAGCATTTGCATCATTTCAA
ATGCATTTGCTCTTTATTGATGT
Found at i:448396 original size:16 final size:16
Alignment explanation
Indices: 448375--448410 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
448365 ACTTTTATAT
**
448375 CTTTGCTTGTTTTTAA
1 CTTTGCTTGTACTTAA
448391 CTTTGCTTGTACTTAA
1 CTTTGCTTGTACTTAA
448407 CTTT
1 CTTT
448411 TCTTAATGAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.14, C:0.17, G:0.11, T:0.58
Consensus pattern (16 bp):
CTTTGCTTGTACTTAA
Found at i:449321 original size:23 final size:21
Alignment explanation
Indices: 449295--449339 Score: 56
Period size: 20 Copynumber: 2.1 Consensus size: 21
449285 TTACAAAGGT
449295 CAAAACCCTAGAAAGTATCAATA
1 CAAAACCC-A-AAAGTATCAATA
*
449318 C-AAACCCATAAGTATCAATA
1 CAAAACCCAAAAGTATCAATA
449338 CA
1 CA
449340 TATTACTTTG
Statistics
Matches: 20, Mismatches: 1, Indels: 4
0.80 0.04 0.16
Matches are distributed among these distances:
20 12 0.60
21 1 0.05
22 6 0.30
23 1 0.05
ACGTcount: A:0.51, C:0.24, G:0.07, T:0.18
Consensus pattern (21 bp):
CAAAACCCAAAAGTATCAATA
Found at i:449467 original size:20 final size:20
Alignment explanation
Indices: 449424--449475 Score: 70
Period size: 20 Copynumber: 2.6 Consensus size: 20
449414 ACCACTGTTT
**
449424 GTATCGATACATGGTAGATT
1 GTATCGATACATGGTAGAAA
449444 GTATCGATACATGGT-GAAAA
1 GTATCGATACATGGTAG-AAA
449464 GTATCGATACAT
1 GTATCGATACAT
449476 TATGCCCAAC
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
19 1 0.03
20 28 0.97
ACGTcount: A:0.35, C:0.12, G:0.23, T:0.31
Consensus pattern (20 bp):
GTATCGATACATGGTAGAAA
Found at i:450479 original size:43 final size:43
Alignment explanation
Indices: 450425--450619 Score: 146
Period size: 43 Copynumber: 4.5 Consensus size: 43
450415 CACTAACTTA
*
450425 TTGGTATGTATGGTTTCATCCTGACCAATACCCTTTTAACTCG
1 TTGGTATGTATGGTTTCATCCTGACCAACACCCTTTTAACTCG
* * * *
450468 TTGGTTTGTATGGTTTCATCCT-AGCTAACACCCTTCTAACTTG
1 TTGGTATGTATGGTTTCATCCTGA-CCAACACCCTTTTAACTCG
** * * * ** **
450511 TTAATATGTATGGTTTTATCCCGACCAATACCCCCCTT-ACTTA
1 TTGGTATGTATGGTTTCATCCTGACCAACA-CCCTTTTAACTCG
* * * *
450554 TTGGTACGTATGGTTTCGTCCTGGCCAACA-CCTTTCTGACTCG
1 TTGGTATGTATGGTTTCATCCTGACCAACACCCTTT-TAACTCG
* *
450597 TTGACT-TGTATGGTTTTATCCTG
1 TTG-GTATGTATGGTTTCATCCTG
450620 GTTAACTTTT
Statistics
Matches: 114, Mismatches: 32, Indels: 12
0.72 0.20 0.08
Matches are distributed among these distances:
41 3 0.03
42 2 0.02
43 103 0.90
44 6 0.05
ACGTcount: A:0.19, C:0.24, G:0.17, T:0.40
Consensus pattern (43 bp):
TTGGTATGTATGGTTTCATCCTGACCAACACCCTTTTAACTCG
Found at i:450565 original size:86 final size:87
Alignment explanation
Indices: 450429--450617 Score: 213
Period size: 86 Copynumber: 2.2 Consensus size: 87
450419 AACTTATTGG
* * ** * ** *
450429 TATGTATGGTTTCATCCTGACCAATACCCTTTTAACTCGTTGGTTTGTATGGTTTCATCCTAGCT
1 TATGTATGGTTTTATCCCGACCAATACCCCCTTAACTCATTGGTACGTATGGTTTCATCCTAGCC
*
450494 AACACCCTTCTAACTTGTT-AA
66 AACACCCTTCTAACTCGTTGAA
* * *
450515 TATGTATGGTTTTATCCCGACCAATACCCCCCTT-ACTTATTGGTACGTATGGTTTCGTCCTGGC
1 TATGTATGGTTTTATCCCGACCAATA-CCCCCTTAACTCATTGGTACGTATGGTTTCATCCTAGC
* * *
450579 CAACACCTTTCTGACTCGTTGAC
65 CAACACCCTTCTAACTCGTTGAA
450602 T-TGTATGGTTTTATCC
1 TATGTATGGTTTTATCC
450618 TGGTTAACTT
Statistics
Matches: 86, Mismatches: 15, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
86 79 0.92
87 7 0.08
ACGTcount: A:0.20, C:0.25, G:0.16, T:0.40
Consensus pattern (87 bp):
TATGTATGGTTTTATCCCGACCAATACCCCCTTAACTCATTGGTACGTATGGTTTCATCCTAGCC
AACACCCTTCTAACTCGTTGAA
Found at i:450764 original size:41 final size:40
Alignment explanation
Indices: 450705--450944 Score: 123
Period size: 41 Copynumber: 6.0 Consensus size: 40
450695 CTCGATCAAC
* ** * *
450705 TTTCCTTTATTGGTTCATATGGTTTCATCCCAACCAACTTT
1 TTTCCTTTGTTGACTCATATGGTTTCATCCCAGCCAAC-CT
* *
450746 TTTCCTTTGTTGACTCATATGGTTTTA-CCCTAGTCAA-C-
1 TTTCCTTTGTTGACTCATATGGTTTCATCCC-AGCCAACCT
* * * ** * * ** *
450784 TTTCTTTTGTTGGCTCGTATAATTTTATTCGGGCCATCTCT
1 TTTCCTTTGTTGACTCATATGGTTTCATCCCAGCCAAC-CT
* ** **
450825 TTTCCTTTGTTGACTCATATAGTTTTGTCCCAATCAA--T
1 TTTCCTTTGTTGACTCATATGGTTTCATCCCAGCCAACCT
* * ** *
450863 TTTTCTTTGTTGGCTTGTATGGTTTCATCTCAGCCAACACT
1 TTTCCTTTGTTGACTCATATGGTTTCATCCCAGCCAAC-CT
* * *
450904 TTT-CTTTCATTGACTCATATGGTTTCATCCTAGTCAACCT
1 TTTCCTTT-GTTGACTCATATGGTTTCATCCCAGCCAACCT
450944 T
1 T
450945 CTTTTGTTGG
Statistics
Matches: 145, Mismatches: 45, Indels: 19
0.69 0.22 0.09
Matches are distributed among these distances:
38 53 0.37
39 1 0.01
40 11 0.08
41 80 0.55
ACGTcount: A:0.17, C:0.23, G:0.13, T:0.47
Consensus pattern (40 bp):
TTTCCTTTGTTGACTCATATGGTTTCATCCCAGCCAACCT
Found at i:450783 original size:79 final size:79
Alignment explanation
Indices: 450700--450966 Score: 245
Period size: 79 Copynumber: 3.4 Consensus size: 79
450690 TTCATCTCGA
* * * *
450700 TCAACTTTCCTTTATTGGTTCATATGGTTTCATCCCAACCAACTTTTTTCCTTTGTTGACTCATA
1 TCAACTTTCCTTTGTTGGTTCGTATGGTTTCATCCCAGCCAACTCTTTTCCTTTGTTGACTCATA
450765 TGGTTTTACCCTAG
66 TGGTTTTACCCTAG
* * ** * * ** *
450779 TCAACTTTCTTTTGTTGGCTCGTATAATTTTATTCGGGCCATCTCTTTTCCTTTGTTGACTCATA
1 TCAACTTTCCTTTGTTGGTTCGTATGGTTTCATCCCAGCCAACTCTTTTCCTTTGTTGACTCATA
* * *
450844 TAGTTTTGTCCC-AA
66 TGGTTTT-ACCCTAG
* * * * *
450858 TCAATTTTTCTTTGTTGGCTT-GTATGGTTTCATCTCAGCCAACACTTTT-CTTTCATTGACTCA
1 TCAACTTTCCTTTGTTGG-TTCGTATGGTTTCATCCCAGCCAACTCTTTTCCTTT-GTTGACTCA
* *
450921 TATGGTTTCATCCTAG
64 TATGGTTTTACCCTAG
* *
450937 TCAACCTTCTTTTGTTGGTAT-GTATGGTTT
1 TCAACTTTCCTTTGTTGGT-TCGTATGGTTT
450967 TATCTTGGCC
Statistics
Matches: 144, Mismatches: 39, Indels: 10
0.75 0.20 0.05
Matches are distributed among these distances:
78 7 0.05
79 133 0.92
80 4 0.03
ACGTcount: A:0.17, C:0.21, G:0.14, T:0.48
Consensus pattern (79 bp):
TCAACTTTCCTTTGTTGGTTCGTATGGTTTCATCCCAGCCAACTCTTTTCCTTTGTTGACTCATA
TGGTTTTACCCTAG
Found at i:451132 original size:43 final size:43
Alignment explanation
Indices: 450948--451559 Score: 282
Period size: 43 Copynumber: 14.3 Consensus size: 43
450938 CAACCTTCTT
* ** * * *
450948 TTGTTGGTATGTATGGTTTTATCTTGGCCAACA-TTTTCTAAG
1 TTGTTGGTATGTATGGTTTTGTCCCGACCAACACCTTTCTAAC
* * * * ** *
450990 TTATAGGTGTGTAAGGTTTCATCTCGACCAACACCTTTCTAAC
1 TTGTTGGTATGTATGGTTTTGTCCCGACCAACACCTTTCTAAC
* * * *
451033 TCGTTGGTA-GTATGGTTTCGTCCTGACCAAC-CCTTTTTAAC
1 TTGTTGGTATGTATGGTTTTGTCCCGACCAACACCTTTCTAAC
* ** *
451074 TTGTTGATACATATGGTTTTGTCCCGACCAACACCCTTCTAAC
1 TTGTTGGTATGTATGGTTTTGTCCCGACCAACACCTTTCTAAC
* * * * *
451117 TTGTTGGCATGTATGGTTTT-ACCCTAACCAAAACCCTTCTAAC
1 TTGTTGGTATGTATGGTTTTGTCCC-GACCAACACCTTTCTAAC
* * * * * *
451160 TTATTAGTACGTATGGTTTTATCTCGACCAACACTTTTCTAAC
1 TTGTTGGTATGTATGGTTTTGTCCCGACCAACACCTTTCTAAC
* * *
451203 TCAGTTGGT-TCGTATGGTTTTGT-GCTAGCCAACACCTTTCTAAC
1 T-TGTTGGTAT-GTATGGTTTTGTCCCGA-CCAACACCTTTCTAAC
* * ** *
451247 TTGTTGGTACGTATAGTTTCAT-CCTAGCCAACACCTTTCTAA-
1 TTGTTGGTATGTATGGTTTTGTCCCGA-CCAACACCTTTCTAAC
* * * ** ** * *
451289 TTCATTAGT-TCGTTTGGTTTCATCTTGGCCAACACCCTTCTAAC
1 TT-GTTGGTAT-GTATGGTTTTGTCCCGACCAACACCTTTCTAAC
** * * * * *
451333 TCATTGGTTTGTATGG-TTAGTCTCGGCCAACACTTTTCTAAC
1 TTGTTGGTATGTATGGTTTTGTCCCGACCAACACCTTTCTAAC
* * * *
451375 TTGTTGGTATGTATGGTTTTGTCTC-AGCCAATACCCTTCTAAA
1 TTGTTGGTATGTATGGTTTTGTCCCGA-CCAACACCTTTCTAAC
** ** * * *
451418 TCATTGGT-TCGTATGGTTTCAT-CCTAGCAACACCTTTCT-AT
1 TTGTTGGTAT-GTATGGTTTTGTCCCGACCAACACCTTTCTAAC
* * * * ** * *
451459 TTCATTAGTTTGTGTGGTTCCGTCCTGACCAACTCCCTTT-TAAC
1 TT-GTTGGTATGTATGGTTTTGTCCCGACCAAC-ACCTTTCTAAC
** * ** *
451503 TCATTGGTTTGTATGGTTTCATCCCAACCAACACCTTTCTAAC
1 TTGTTGGTATGTATGGTTTTGTCCCGACCAACACCTTTCTAAC
*
451546 TTGTTAGTATGTAT
1 TTGTTGGTATGTAT
451560 CATTTCATCC
Statistics
Matches: 432, Mismatches: 114, Indels: 47
0.73 0.19 0.08
Matches are distributed among these distances:
41 18 0.04
42 133 0.31
43 239 0.55
44 42 0.10
ACGTcount: A:0.21, C:0.23, G:0.16, T:0.40
Consensus pattern (43 bp):
TTGTTGGTATGTATGGTTTTGTCCCGACCAACACCTTTCTAAC
Found at i:451244 original size:130 final size:128
Alignment explanation
Indices: 451101--451457 Score: 371
Period size: 130 Copynumber: 2.8 Consensus size: 128
451091 TTTGTCCCGA
* *
451101 CCAACACCCTTCTAACTTGTTGGCATGTATGGTTTTACCCTAACCAAAACCCTTCTAACTT-ATT
1 CCAACACCTTTCTAACTTGTTGGTATGTATGGTTTTACCCTAACCAAAACCCTTCTAA-TTCATT
* ** *
451165 AGTACGTATGGTTTTATCTCGACCAACACTTTTCTAACTCAGTTGGTTCGTATGGTTTTGTGCT-
65 AGTACGTATGGTTTCATCTCGACCAACACCCTTCTAACTCA-TTGGTTCGTATGG-TTAGT-CTC
451229 AG
127 AG
* * * * * * *
451231 CCAACACCTTTCTAACTTGTTGGTACGTATAGTTTCATCCTAGCCAACACCTTTCTAATTCATTA
1 CCAACACCTTTCTAACTTGTTGGTATGTATGGTTTTACCCTAACCAAAACCCTTCTAATTCATTA
* * * * * *
451296 GTTCGTTTGGTTTCATCTTGGCCAACACCCTTCTAACTCATTGGTTTGTATGGTTAGTCTCGG
66 GTACGTATGGTTTCATCTCGACCAACACCCTTCTAACTCATTGGTTCGTATGGTTAGTCTCAG
* ** * * *
451359 CCAACACTTTTCTAACTTGTTGGTATGTATGGTTTT-GTCTCAGCCAATACCCTTCTAAATCATT
1 CCAACACCTTTCTAACTTGTTGGTATGTATGGTTTTACCCT-AACCAAAACCCTTCTAATTCATT
* * * * *
451423 GGTTCGTATGGTTTCATC-CTAGCAACACCTTTCTA
65 AGTACGTATGGTTTCATCTCGACCAACACCCTTCTA
451458 TTTCATTAGT
Statistics
Matches: 189, Mismatches: 35, Indels: 9
0.81 0.15 0.04
Matches are distributed among these distances:
127 16 0.08
128 73 0.39
129 14 0.07
130 86 0.46
ACGTcount: A:0.22, C:0.24, G:0.15, T:0.39
Consensus pattern (128 bp):
CCAACACCTTTCTAACTTGTTGGTATGTATGGTTTTACCCTAACCAAAACCCTTCTAATTCATTA
GTACGTATGGTTTCATCTCGACCAACACCCTTCTAACTCATTGGTTCGTATGGTTAGTCTCAG
Found at i:451503 original size:128 final size:126
Alignment explanation
Indices: 451085--451521 Score: 378
Period size: 128 Copynumber: 3.4 Consensus size: 126
451075 TGTTGATACA
* * * * * *
451085 TATGGTTTTGTCCCGACCAACACCCTTCTAACTTGTTGGCATGTATGGTTTTACCCTAACCAAAA
1 TATGG-TTAGTCCTGACCAACACCTTTCTAACTTGTTGGTATGTATGGTTTT-TCCTAGCCAAAA
* * * * * * * *
451150 CCCTTCTAACTTATTAGTACGTATGGTTTTATCTCGACCAACACTTTTCTAACTCAGTTGGTTCG
64 CCCTTCTAAATCATTAGTTCGTATGGTTTCATC-CTAGCAACACCTTTCTAACTCA-TTGGTTTG
* * * * * *
451215 TATGGTTTTGTGCT-AGCCAACACCTTTCTAACTTGTTGGTACGTATAGTTTCATCCTAGCCAAC
1 TATGG-TTAGTCCTGA-CCAACACCTTTCTAACTTGTTGGTATGTATGGTTT-TTCCTAGCCAAA
* * * * * *
451279 ACCTTTCTAATTCATTAGTTCGTTTGGTTTCATCTTGGCCAACACCCTTCTAACTCATTGGTTTG
63 ACCCTTCTAAATCATTAGTTCGTATGGTTTCATCCTAG-CAACACCTTTCTAACTCATTGGTTTG
* * *
451344 TATGGTTAGT-CTCGGCCAACACTTTTCTAACTTGTTGGTATGTATGGTTTTGT-CTCAGCCAAT
1 TATGGTTAGTCCT-GACCAACACCTTTCTAACTTGTTGGTATGTATGGTTTT-TCCT-AGCCAAA
* ** *
451407 ACCCTTCTAAATCATTGGTTCGTATGGTTTCATCCTAGCAACACCTTTCTATTTCATTAGTTTG
63 ACCCTTCTAAATCATTAGTTCGTATGGTTTCATCCTAGCAACACCTTTCTAACTCATTGGTTTG
* * * ** *
451471 TGTGGTTCCGTCCTGACCAACTCCCTTT-TAACTCATTGGTTTGTATGGTTT
1 TATGGTT-AGTCCTGACCAAC-ACCTTTCTAACTTGTTGGTATGTATGGTTT
451522 CATCCCAACC
Statistics
Matches: 249, Mismatches: 48, Indels: 22
0.78 0.15 0.07
Matches are distributed among these distances:
127 32 0.13
128 103 0.41
129 19 0.08
130 95 0.38
ACGTcount: A:0.20, C:0.24, G:0.16, T:0.40
Consensus pattern (126 bp):
TATGGTTAGTCCTGACCAACACCTTTCTAACTTGTTGGTATGTATGGTTTTTCCTAGCCAAAACC
CTTCTAAATCATTAGTTCGTATGGTTTCATCCTAGCAACACCTTTCTAACTCATTGGTTTG
Found at i:451543 original size:128 final size:128
Alignment explanation
Indices: 451098--451576 Score: 360
Period size: 128 Copynumber: 3.7 Consensus size: 128
451088 GGTTTTGTCC
* ** * * * * * * *
451098 CGACCAACACCCTTCTAACTTGTTGGCATGTATGGTTTTA-CCCTAACCAAAACCCTTCTAACTT
1 CGACCAACACCTTTCTAACTCATTGGTATGTATGGTTTCATCCC-AGCCAACACCTTTCTAAATC
* * * ** * * *
451162 ATTAGTACGTATGGTTTTAT-CTCGACCAACACTTTTCTAACTCAGTTGGTTCGTATGGTTTTGT
65 ATTAGTTCGTATGGTTTCATCCTAG-CCAACACCCTTCTAACTCA-TTAGTTTGTATGG-TTAGT
451226 GCT
127 -CT
* ** * * * *
451229 AG-CCAACACCTTTCTAACTTGTTGGTACGTATAGTTTCATCCTAGCCAACACCTTTCTAATTCA
1 CGACCAACACCTTTCTAACTCATTGGTATGTATGGTTTCATCCCAGCCAACACCTTTCTAAATCA
* * * *
451293 TTAGTTCGTTTGGTTTCATCTTGGCCAACACCCTTCTAACTCATTGGTTTGTATGGTTAGTCT
66 TTAGTTCGTATGGTTTCATCCTAGCCAACACCCTTCTAACTCATTAGTTTGTATGGTTAGTCT
* * ** ** * * *
451356 CGGCCAACACTTTTCTAACTTGTTGGTATGTATGGTTTTGTCTCAGCCAATACCCTTCTAAATCA
1 CGACCAACACCTTTCTAACTCATTGGTATGTATGGTTTCATCCCAGCCAACACCTTTCTAAATCA
* * ** * *
451421 TTGGTTCGTATGGTTTCATCCTAG-CAACACCTTTCTATTTCATTAGTTTGTGTGGTTCCGTC-
66 TTAGTTCGTATGGTTTCATCCTAGCCAACACCCTTCTAACTCATTAGTTTGTATGGTT-AGTCT
* * * *
451483 CTGACCAACTCCCTTT-TAACTCATTGGTTTGTATGGTTTCATCCCAACCAACACCTTTCTAACT
1 C-GACCAAC-ACCTTTCTAACTCATTGGTATGTATGGTTTCATCCCAGCCAACACCTTTCTAAAT
** **
451547 TGTTAGTAT-GTATCATTTCATCCTAGCCAA
64 CATTAGT-TCGTATGGTTTCATCCTAGCCAA
451577 TACTTTCTAA
Statistics
Matches: 280, Mismatches: 60, Indels: 18
0.78 0.17 0.05
Matches are distributed among these distances:
127 32 0.11
128 142 0.51
129 20 0.07
130 81 0.29
131 5 0.02
ACGTcount: A:0.22, C:0.25, G:0.15, T:0.39
Consensus pattern (128 bp):
CGACCAACACCTTTCTAACTCATTGGTATGTATGGTTTCATCCCAGCCAACACCTTTCTAAATCA
TTAGTTCGTATGGTTTCATCCTAGCCAACACCCTTCTAACTCATTAGTTTGTATGGTTAGTCT
Found at i:451588 original size:85 final size:87
Alignment explanation
Indices: 451004--451588 Score: 335
Period size: 85 Copynumber: 6.9 Consensus size: 87
450994 AGGTGTGTAA
* * * * * *
451004 GGTTTCATCTCGACCAACACCTTTCTAAC-TCGTTGGTA-GTATGGTTTCGTCCT-GACCAA-CC
1 GGTTTCATCCCAACCAACACCTTTCTAACTTCATTAGTATGTATGGTTTCATCCTAG-CCAATAC
* ** * * *
451065 CTTTTTAACTTGTTGATACATAT
65 CTTTCTAACTCATTGGTTCGTAT
** * * * * * * * * *
451088 GGTTTTGTCCCGACCAACACCCTTCTAACTT-GTTGGCATGTATGGTTTTACCCTAACCAAAACC
1 GGTTTCATCCCAACCAACACCTTTCTAACTTCATTAGTATGTATGGTTTCATCCTAGCCAATACC
* * * *
451152 CTTCTAACTTATTAGTACGTAT
66 TTTCTAACTCATTGGTTCGTAT
* * * * * ** * *
451174 GGTTTTATCTCGACCAACACTTTTCTAAC-TCAGTTGGT-TCGTATGGTTTTGTGCTAGCCAACA
1 GGTTTCATCCCAACCAACACCTTTCTAACTTCA-TTAGTAT-GTATGGTTTCATCCTAGCCAATA
** *
451237 CCTTTCTAACTTGTTGGTACGTAT
64 CCTTTCTAACTCATTGGTTCGTAT
* * * * * * *
451261 AGTTTCATCCTAGCCAACACCTTTCTAA-TTCATTAGT-TCGTTTGGTTTCATCTTGGCCAACAC
1 GGTTTCATCCCAACCAACACCTTTCTAACTTCATTAGTAT-GTATGGTTTCATCCTAGCCAATAC
* *
451324 CCTTCTAACTCATTGGTTTGTAT
65 CTTTCTAACTCATTGGTTCGTAT
* ** * * * **
451347 GG-TT-AGTCTCGGCCAACACTTTTCTAACTT-GTTGGTATGTATGGTTTTGT-CTCAGCCAATA
1 GGTTTCA-TCCCAACCAACACCTTTCTAACTTCATTAGTATGTATGGTTTCATCCT-AGCCAATA
* *
451408 CCCTTCTAAATCATTGGTTCGTAT
64 CCTTTCTAACTCATTGGTTCGTAT
* * * * * * * *
451432 GGTTTCAT-CCTAGCAACACCTTTCT-ATTTCATTAGTTTGTGTGGTTCCGTCCT-GACCAACTC
1 GGTTTCATCCCAACCAACACCTTTCTAACTTCATTAGTATGTATGGTTTCATCCTAG-CCAA-TA
*
451494 CCTTT-TAACTCATTGGTTTGTAT
64 CCTTTCTAACTCATTGGTTCGTAT
* **
451517 GGTTTCATCCCAACCAACACCTTTCTAACTT-GTTAGTATGTATCATTTCATCCTAGCCAATA-C
1 GGTTTCATCCCAACCAACACCTTTCTAACTTCATTAGTATGTATGGTTTCATCCTAGCCAATACC
451580 TTTCTAACT
66 TTTCTAACT
451589 AACTTGTTGG
Statistics
Matches: 388, Mismatches: 91, Indels: 43
0.74 0.17 0.08
Matches are distributed among these distances:
84 41 0.11
85 140 0.36
86 135 0.35
87 72 0.19
ACGTcount: A:0.21, C:0.25, G:0.15, T:0.39
Consensus pattern (87 bp):
GGTTTCATCCCAACCAACACCTTTCTAACTTCATTAGTATGTATGGTTTCATCCTAGCCAATACC
TTTCTAACTCATTGGTTCGTAT
Found at i:451852 original size:41 final size:41
Alignment explanation
Indices: 451621--451898 Score: 281
Period size: 41 Copynumber: 6.8 Consensus size: 41
451611 TGCTTCAGCT
* ** * *
451621 AACATCTCACCCTTTATTGAAATGAAGGTTTCCCCCT-GATC
1 AACATCTCACCCTTTGTTGACGTGATGGTTTCGCCCTAG-TC
*
451662 AACATCTCACCCTTTGTTGACGTGATGGTTTTGCCCTAGTC
1 AACATCTCACCCTTTGTTGACGTGATGGTTTCGCCCTAGTC
* * *
451703 AACATCTCACCCTTTGTTGACATGATGATTTCGCCCTGGTC
1 AACATCTCACCCTTTGTTGACGTGATGGTTTCGCCCTAGTC
* *
451744 AACATCTCACCCCTTGTTGACGTGATGGTTTCGCCCTTGTC
1 AACATCTCACCCTTTGTTGACGTGATGGTTTCGCCCTAGTC
* * * * *
451785 AACA-CTTCACTCTTTGTTGATGTGATGGTTTTGCCTTAGTA
1 AACATC-TCACCCTTTGTTGACGTGATGGTTTCGCCCTAGTC
* * * * * * *
451826 AACATCTCATCTTTTATTGACATGATGGTTTCACACTAGTT
1 AACATCTCACCCTTTGTTGACGTGATGGTTTCGCCCTAGTC
* * * *
451867 AGCATCTCACTCTTTATTGATGTGATGGTTTC
1 AACATCTCACCCTTTGTTGACGTGATGGTTTC
451899 TCCTTGGTCA
Statistics
Matches: 196, Mismatches: 38, Indels: 6
0.82 0.16 0.03
Matches are distributed among these distances:
40 1 0.01
41 193 0.98
42 2 0.01
ACGTcount: A:0.21, C:0.25, G:0.17, T:0.38
Consensus pattern (41 bp):
AACATCTCACCCTTTGTTGACGTGATGGTTTCGCCCTAGTC
Found at i:451909 original size:123 final size:123
Alignment explanation
Indices: 451621--451910 Score: 341
Period size: 123 Copynumber: 2.4 Consensus size: 123
451611 TGCTTCAGCT
* * * *
451621 AACATCTCACCCTTTATTGAAATGAAGGTTTCCCCCTGATCAACATCTCACCCTTTGTTGACGTG
1 AACATCTCACCCTTTATTGAAGTGATGGTTTCCCCTTGGTCAACATCTCACCCTTTGTTGACGTG
* * * * *
451686 ATGGTTTTGCCCTAGTCAACATCTCACCCTTTGTTGACATGATGATTTCGCCCTGGTC
66 ATGGTTTTGCCCTAGTAAACATCTCACCCTTTATTGACATGATGATTTCACACTAGTC
* * * * *
451744 AACATCTCACCCCTTGTTGACGTGATGGTTTCGCCCTT-GTCAACA-CTTCACTCTTTGTTGATG
1 AACATCTCACCCTTTATTGAAGTGATGGTTTC-CCCTTGGTCAACATC-TCACCCTTTGTTGACG
* * * * *
451807 TGATGGTTTTGCCTTAGTAAACATCTCATCTTTTATTGACATGATGGTTTCACACTAGTT
64 TGATGGTTTTGCCCTAGTAAACATCTCACCCTTTATTGACATGATGATTTCACACTAGTC
* * * *
451867 AGCATCTCACTCTTTATTGATGTGATGGTTTCTCCTTGGTCAAC
1 AACATCTCACCCTTTATTGAAGTGATGGTTTCCCCTTGGTCAAC
451911 TTTTCATCTT
Statistics
Matches: 139, Mismatches: 25, Indels: 6
0.82 0.15 0.04
Matches are distributed among these distances:
122 5 0.04
123 130 0.94
124 4 0.03
ACGTcount: A:0.20, C:0.25, G:0.17, T:0.38
Consensus pattern (123 bp):
AACATCTCACCCTTTATTGAAGTGATGGTTTCCCCTTGGTCAACATCTCACCCTTTGTTGACGTG
ATGGTTTTGCCCTAGTAAACATCTCACCCTTTATTGACATGATGATTTCACACTAGTC
Found at i:453300 original size:153 final size:153
Alignment explanation
Indices: 452978--453384 Score: 451
Period size: 154 Copynumber: 2.6 Consensus size: 153
452968 TTTCTTTGAT
* * *
452978 AAGATTTTTCTAACTTTATAATTTCCAAAATTTTTTAAATATTATTTTTTAATTCATATTAAATC
1 AAGATTTTTCTAACTTTATAATTTCCAAAATTCTTCAAATATTATTGTTTAATTCATATTAAATC
* * * *
453043 AGTTTTGAATAATTCATTCATTTTATGAGTTTTAGAATTTCTTTTGTTACCAAAATGCGAAATTT
66 AGTTTTGAAAAAATCATTCATTTTATGAGTTTTAGAATTTCTTCTATTACCAAAATGCGAAATTT
*
453108 CCTACTCCATAAATTTTCTTAAA
131 CCTACTCCATAAATTTTCCTAAA
* * ** * * *
453131 AAGATTTTTCCAAATTTATAATTTTGAAAATTCTTCAAATATTATTGTTTAGTTAATATTAAATT
1 AAGATTTTTCTAACTTTATAATTTCCAAAATTCTTCAAATATTATTGTTTAATTCATATTAAATC
453196 AGTTTTGAAAAAATCAATTCATTTTAT-ATGTTTTAGAATTT-TTCCTATTACCAAAATGC-AAA
66 AGTTTTGAAAAAATC-ATTCATTTTATGA-GTTTTAGAATTTCTT-CTATTACCAAAATGCGAAA
* * ** * *
453258 GTTTTCTATTTTATATATTTTCCTAGA
128 -TTTCCTACTCCATAAATTTTCCTAAA
* * * * * * * *
453285 AGGATTTTTCTAATTTTATAATTTCCATAATTCTTCGAATATTGTTGTCTAATCCGTATTAAATC
1 AAGATTTTTCTAACTTTATAATTTCCAAAATTCTTCAAATATTATTGTTTAATTCATATTAAATC
* ** *
453350 AGTTTTGAAAAATTTTGTTTATTTTATGAGTTTTA
66 AGTTTTGAAAAA-ATCATTCATTTTATGAGTTTTA
453385 TAAATTTTTT
Statistics
Matches: 209, Mismatches: 39, Indels: 11
0.81 0.15 0.04
Matches are distributed among these distances:
153 74 0.35
154 133 0.64
155 2 0.01
ACGTcount: A:0.33, C:0.10, G:0.08, T:0.49
Consensus pattern (153 bp):
AAGATTTTTCTAACTTTATAATTTCCAAAATTCTTCAAATATTATTGTTTAATTCATATTAAATC
AGTTTTGAAAAAATCATTCATTTTATGAGTTTTAGAATTTCTTCTATTACCAAAATGCGAAATTT
CCTACTCCATAAATTTTCCTAAA
Found at i:455090 original size:82 final size:84
Alignment explanation
Indices: 454833--455180 Score: 289
Period size: 85 Copynumber: 4.1 Consensus size: 84
454823 ACGGTAGGGT
* * * * *
454833 TGGAGTATCCCT-AGAGATAAAATT-ATACAAAGAAAAATTTGATTTATGAAAACTGGGGTTGGA
1 TGGAGTTTCCCTAAG-GATAAAATTGA-ACAAAGAAAAATTTAATTTTTGAAGAC--GAGTTGGA
* * *
454896 ATGTCCCCTTCGGATAGTGGGGA
62 GTGTTCCCTTCGAATAGTGGGGA
* * * * * *
454919 TAGAGTTTCCCTAAGGATAAAATTGTACGAAGTAGAATTTAATTTTTGAAGAACGAGCTTAGAGT
1 TGGAGTTTCCCTAAGGATAAAATTGAACAAAGAAAAATTTAATTTTTGAAG-ACGAG-TTGGAGT
* *
454984 -ATCCC-TCGAAATAGTGAGGA
64 GTTCCCTTCG-AATAGTGGGGA
* *
455004 TGGAGTTTTCCTAAGGATAAAATT-AACAAAGAAAAATTTAATTTTTGAAGA-GCGTTGGAGTGT
1 TGGAGTTTCCCTAAGGATAAAATTGAACAAAGAAAAATTTAATTTTTGAAGACGAGTTGGAGTGT
455067 TCCC-TCAGAATAGTGGGGA
66 TCCCTTC-GAATAGTGGGGA
* * ** * * * *
455086 TGGAGTTTCCCCAAGGATAAAATTGTATGAAGGAAAATTTAAGTTTTGAAGAGTGAGGTGGAGTG
1 TGGAGTTTCCCTAAGGATAAAATTGAACAAAGAAAAATTTAATTTTTGAAGA-CGAGTTGGAGTG
* *
455151 -TCCCTTCAGAATAGTAGGAA
65 TTCCCTTC-GAATAGTGGGGA
*
455171 TAGAGTTTCC
1 TGGAGTTTCC
455181 TCAGAGATGA
Statistics
Matches: 213, Mismatches: 38, Indels: 23
0.78 0.14 0.08
Matches are distributed among these distances:
81 6 0.03
82 40 0.19
83 24 0.11
84 29 0.14
85 67 0.31
86 43 0.20
87 4 0.02
ACGTcount: A:0.35, C:0.11, G:0.25, T:0.29
Consensus pattern (84 bp):
TGGAGTTTCCCTAAGGATAAAATTGAACAAAGAAAAATTTAATTTTTGAAGACGAGTTGGAGTGT
TCCCTTCGAATAGTGGGGA
Found at i:458750 original size:13 final size:13
Alignment explanation
Indices: 458732--458756 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
458722 ACACATAGTA
458732 TGTATCGATACAT
1 TGTATCGATACAT
458745 TGTATCGATACA
1 TGTATCGATACA
458757 CCATAAAATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Done.