Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold286
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1428881
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.33
Warning! 499 characters in sequence are not A, C, G, or T
File 6 of 9
Found at i:725657 original size:19 final size:19
Alignment explanation
Indices: 725633--725687 Score: 101
Period size: 19 Copynumber: 2.9 Consensus size: 19
725623 CAGTAGCTAA
*
725633 TTATGTATCGATACAATAC
1 TTATGTATCGATACAAAAC
725652 TTATGTATCGATACAAAAC
1 TTATGTATCGATACAAAAC
725671 TTATGTATCGATACAAA
1 TTATGTATCGATACAAA
725688 TCGTTGAATT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 35 1.00
ACGTcount: A:0.40, C:0.15, G:0.11, T:0.35
Consensus pattern (19 bp):
TTATGTATCGATACAAAAC
Found at i:726436 original size:55 final size:55
Alignment explanation
Indices: 726336--726910 Score: 734
Period size: 55 Copynumber: 10.3 Consensus size: 55
726326 ATAAAGTGTA
* * * * * * *
726336 TCCTTCTCATTGAGGAGTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
* *
726391 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTAGGCTTTGAAA-ATAAAAAG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGT-----G
** * *
726450 CATCCTGCTCTTTGAGGACTGAAAAATGCCACCAACCTGTGTGGGCTTTAAAAGGTG
1 --TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
*
726507 TCCTGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTGAAAGGTG
1 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
* * *
726562 TCCTGCTCTTCGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
* *
726617 TCCTACTCTTTGAGGACT-AGAAGGCGCCACCAACTTGTGTGGGCTTT-AAGAGGTG
1 TCCTGCTCTTTGAGGACTGA-AAGGTGCCACCAACTTGTGTGGGCTTTGAA-AGGTG
*
726672 TCCTGCTCTTTGAGGACTGGAAAGGTGCCACCAACTTGTGTGGGCTTTGAGAGGTG
1 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
* * *
726728 TCCTGCTCTTTGAGGACTGGAAGGCGCCACCAACTTGTGTAGGCTTT-AAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAA-AGGTG
*
726783 TCCTGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTGAAAGGTG
1 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
*
726838 TCCTGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTT-AAGAGGTG
1 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAA-AGGTG
726893 TCCTGCTCTTTGAGGACT
1 TCCTGCTCTTTGAGGACT
726911 AAAAAGCGGA
Statistics
Matches: 464, Mismatches: 37, Indels: 38
0.86 0.07 0.07
Matches are distributed among these distances:
54 9 0.02
55 346 0.75
56 58 0.12
57 3 0.01
59 1 0.00
61 46 0.10
62 1 0.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (55 bp):
TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
Found at i:726759 original size:221 final size:219
Alignment explanation
Indices: 726356--726915 Score: 775
Period size: 221 Copynumber: 2.5 Consensus size: 219
726346 TGAGGAGTAA
* *
726356 AAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTGAAAGGTGCCAC
1 AAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGACTG-AAGGTGCCAC
* * * **
726421 CAACTTGTGTAGGCTTTGAAAATAAAAAGCATCCTGCTCTTTGAGGACTGAAAAATGCCACCAAC
65 CAACTTGTGTGGGC-TT-----TAAGAGGTGTCCTGCTCTTTGAGGACTGAAAAATGCCACCAAC
* *
726486 CTGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGC
124 CTGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGAGGACTGGAAAACGCCACCAACTTGTGTAGGC
*
726551 TTTGAA-AGGTGTCCTGCTCTTCGGGGACT-G
189 TTT-AAGAGGTGTCCTGCTCTTCGAGGACTGG
* * *
726581 AAAGGTGCCACCAACTTGTGTGGGCTTTGAGAGGTGTCCTACTCTTTGAGGACTAGAAGGCGCCA
1 AAA-GTGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGACT-GAAGGTGCCA
** *
726646 CCAACTTGTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGAGGACTGGAAAGGTGCCACCAACTTGT
64 CCAACTTGTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGAGGACT-GAAAAATGCCACCAACCTGT
* * **
726711 GTGGGCTTTGAGAGGTGTCCTGCTCTTTGAGGACTGGAAGGCGCCACCAACTTGTGTAGGCTTTA
128 GTGGGCTTTAAAAGGTGTCCTGCTCTTTGAGGACTGGAAAACGCCACCAACTTGTGTAGGCTTTA
*
726776 AGAGGTGTCCTGCTCTTTGAGGACTGG
193 AGAGGTGTCCTGCTCTTCGAGGACTGG
* **
726803 AAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGACTGGAAAATGCCAC
1 AAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGACT-GAAGGTGCCAC
726868 CAACTTGTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGAGGACT-AAAAA
65 CAACTTGTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGAGGACTGAAAAA
726916 GCGGAAGGAG
Statistics
Matches: 300, Mismatches: 30, Indels: 16
0.87 0.09 0.05
Matches are distributed among these distances:
219 3 0.01
220 25 0.08
221 194 0.65
222 4 0.01
225 5 0.02
226 68 0.23
227 1 0.00
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.28
Consensus pattern (219 bp):
AAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGACTGAAGGTGCCACC
AACTTGTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGAGGACTGAAAAATGCCACCAACCTGTGTG
GGCTTTAAAAGGTGTCCTGCTCTTTGAGGACTGGAAAACGCCACCAACTTGTGTAGGCTTTAAGA
GGTGTCCTGCTCTTCGAGGACTGG
Found at i:727905 original size:9 final size:9
Alignment explanation
Indices: 727878--727951 Score: 53
Period size: 9 Copynumber: 7.9 Consensus size: 9
727868 TAAGTAGGTT
727878 TTTTCTTTTC
1 TTTT-TTTTC
*
727888 TCTCTTTTTC
1 T-TTTTTTTC
* *
727898 TTTGTTTTG
1 TTTTTTTTC
*
727907 TTTTTTTTG
1 TTTTTTTTC
727916 TTTTTTTTCCCC
1 TTTTTTTT---C
727928 TTTTTTTT-
1 TTTTTTTTC
727936 TTTTTTTT-
1 TTTTTTTTC
727944 TTTTTTTT
1 TTTTTTTT
727952 TGAAGAGAAG
Statistics
Matches: 54, Mismatches: 6, Indels: 10
0.77 0.09 0.14
Matches are distributed among these distances:
8 16 0.30
9 21 0.39
10 7 0.13
11 2 0.04
12 8 0.15
ACGTcount: A:0.00, C:0.12, G:0.04, T:0.84
Consensus pattern (9 bp):
TTTTTTTTC
Found at i:727910 original size:14 final size:13
Alignment explanation
Indices: 727892--727953 Score: 51
Period size: 11 Copynumber: 4.8 Consensus size: 13
727882 CTTTTCTCTC
727892 TTTTTCTTTGTTT
1 TTTTTCTTTGTTT
*
727905 TGTTTTTTTTGTTT
1 T-TTTTCTTTGTTT
727919 TTTTTCCCCTTT-TTT
1 TTTTT---CTTTGTTT
727934 TTTTT-TTT-TTT
1 TTTTTCTTTGTTT
727945 TTTTT-TTTG
1 TTTTTCTTTG
727954 AAGAGAAGGT
Statistics
Matches: 42, Mismatches: 2, Indels: 11
0.76 0.04 0.20
Matches are distributed among these distances:
11 14 0.33
13 5 0.12
14 12 0.29
15 8 0.19
16 3 0.07
ACGTcount: A:0.00, C:0.08, G:0.06, T:0.85
Consensus pattern (13 bp):
TTTTTCTTTGTTT
Found at i:727932 original size:1 final size:1
Alignment explanation
Indices: 727928--727952 Score: 50
Period size: 1 Copynumber: 25.0 Consensus size: 1
727918 TTTTTTCCCC
727928 TTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTT
727953 GAAGAGAAGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 24 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:739667 original size:42 final size:42
Alignment explanation
Indices: 739612--739730 Score: 193
Period size: 42 Copynumber: 2.8 Consensus size: 42
739602 TTCTTCTCTC
* *
739612 CTCCTCCTGTCATCCCTCCTCTCTCTATTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
*
739654 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
* *
739696 CTCCTCCTATCATCCCTCCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
739731 TTGAGGGCTA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 71 1.00
ACGTcount: A:0.08, C:0.46, G:0.03, T:0.43
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
Found at i:739671 original size:12 final size:11
Alignment explanation
Indices: 739645--739720 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
739635 TCTATTATCT
*
739645 CTCCTGTCTCTC
1 CTCCTATCTC-C
739657 CTCCTATCATCC
1 CTCCTATC-TCC
739669 CTCCTATCT--
1 CTCCTATCTCC
*
739678 CTACTATCT--
1 CTCCTATCTCC
*
739687 CTCCTGTCTCTC
1 CTCCTATCTC-C
739699 CTCCTATCATCC
1 CTCCTATC-TCC
*
739711 CTCCTCTCTC
1 CTCCTATCTC
739721 TTCTTTCTCT
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 3 0.06
12 31 0.58
13 4 0.08
ACGTcount: A:0.09, C:0.49, G:0.03, T:0.39
Consensus pattern (11 bp):
CTCCTATCTCC
Found at i:739672 original size:24 final size:24
Alignment explanation
Indices: 739636--739721 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
739626 CCTCCTCTCT
* *
739636 CTATTATCTCTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
* *
739660 CTATCATCCCTCC--TATCT-CTA
1 CTATCATCCCTCCTGTCTCTCCTC
739681 CTATC-T--CTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
*
739702 CTATCATCCCTCCTCTCTCT
1 CTATCATCCCTCCTGTCTCT
739722 TCTTTCTCTT
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 4 0.08
20 5 0.10
21 14 0.29
22 5 0.10
24 21 0.43
ACGTcount: A:0.10, C:0.45, G:0.02, T:0.42
Consensus pattern (24 bp):
CTATCATCCCTCCTGTCTCTCCTC
Found at i:739696 original size:18 final size:18
Alignment explanation
Indices: 739627--739697 Score: 52
Period size: 18 Copynumber: 3.6 Consensus size: 18
739617 CCTGTCATCC
* *
739627 CTCCTCTCTCTATTATCT
1 CTCCTGTCTCTACTATCT
*
739645 CTCCTGTCTCTCCTCCTATCAT
1 CTCCTG--TCT-CTACTATC-T
*
739667 CCCTCCTATCTCTACTATCT
1 --CTCCTGTCTCTACTATCT
739687 CTCCTGTCTCT
1 CTCCTGTCTCT
739698 CCTCCTATCA
Statistics
Matches: 41, Mismatches: 6, Indels: 12
0.69 0.10 0.20
Matches are distributed among these distances:
18 15 0.37
20 4 0.10
21 13 0.32
22 4 0.10
24 5 0.12
ACGTcount: A:0.10, C:0.44, G:0.03, T:0.44
Consensus pattern (18 bp):
CTCCTGTCTCTACTATCT
Found at i:747251 original size:28 final size:28
Alignment explanation
Indices: 747211--747282 Score: 99
Period size: 28 Copynumber: 2.6 Consensus size: 28
747201 GGAATAAAGC
** *
747211 CGGGGTTGGAGTATCCCCTCGGAAGTAA
1 CGGGGTTGGAGTATCCCCGAGGAAATAA
*
747239 CGGGGTTGGAGTATCCCCGATGAAATAA
1 CGGGGTTGGAGTATCCCCGAGGAAATAA
*
747267 CGAGGTTGGAGTATCC
1 CGGGGTTGGAGTATCC
747283 TCGATTGTGA
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.24, C:0.19, G:0.35, T:0.22
Consensus pattern (28 bp):
CGGGGTTGGAGTATCCCCGAGGAAATAA
Found at i:747427 original size:51 final size:51
Alignment explanation
Indices: 747270--747440 Score: 216
Period size: 51 Copynumber: 3.3 Consensus size: 51
747260 GAAATAACGA
* * *
747270 GGTTGGAGTATCCTCGATTGTGAAAAATTGGTATTTTTGGAAATAAAATCGG
1 GGTTGGAGTATCCCCGATTATGAAAAATTGGTA-TTTTGAAAATAAAATCGG
* * * * *
747322 AGTTGGAGTATCCCCGATTAAAGGAAAAATTGGTGTTGTGAAAATAAAACCGG
1 GGTTGGAGTATCCCCGATT--ATGAAAAATTGGTATTTTGAAAATAAAATCGG
* * *
747375 GGTTGGAGTATCCCCGATTATGAAAAATCGATATTTTGAAAATAAAGTCGG
1 GGTTGGAGTATCCCCGATTATGAAAAATTGGTATTTTGAAAATAAAATCGG
747426 GGTTGGAGTATCCCC
1 GGTTGGAGTATCCCC
747441 TCAGAAATAA
Statistics
Matches: 101, Mismatches: 16, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
51 40 0.40
52 17 0.17
53 33 0.33
54 11 0.11
ACGTcount: A:0.33, C:0.12, G:0.26, T:0.29
Consensus pattern (51 bp):
GGTTGGAGTATCCCCGATTATGAAAAATTGGTATTTTGAAAATAAAATCGG
Found at i:747486 original size:27 final size:28
Alignment explanation
Indices: 747423--747498 Score: 102
Period size: 27 Copynumber: 2.8 Consensus size: 28
747413 AAAATAAAGT
*
747423 CGGGGTTGGAGTATCCCCTCA-GAAATAA
1 CGGGGTTGGAGTATCCCC-GATGAAATAA
*
747451 CGGGGTTGGAGTATCCCCGATG-ATTAA
1 CGGGGTTGGAGTATCCCCGATGAAATAA
*
747478 CGGGGTTGGAGTGTCCCCGAT
1 CGGGGTTGGAGTATCCCCGAT
747499 TGTGAAGAAA
Statistics
Matches: 44, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
27 25 0.57
28 19 0.43
ACGTcount: A:0.21, C:0.21, G:0.34, T:0.24
Consensus pattern (28 bp):
CGGGGTTGGAGTATCCCCGATGAAATAA
Found at i:749978 original size:13 final size:13
Alignment explanation
Indices: 749960--749985 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
749950 ACAAAGATCC
749960 ATGTATCGATACA
1 ATGTATCGATACA
749973 ATGTATCGATACA
1 ATGTATCGATACA
749986 CAGAAAAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:749981 original size:33 final size:33
Alignment explanation
Indices: 749939--750005 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
749929 AAAATTTCCA
***
749939 AATGTATCGATACAAAGATCCATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
*
749972 AATGTATCGATACACAGAAAAATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
750005 A
1 A
750006 TTTCCTTGGC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.43, C:0.16, G:0.15, T:0.25
Consensus pattern (33 bp):
AATGTATCGATACAAAGAAAAATGTATCGATAC
Found at i:750049 original size:19 final size:18
Alignment explanation
Indices: 750025--750092 Score: 83
Period size: 19 Copynumber: 3.9 Consensus size: 18
750015 CAGTAGCTAA
750025 TTATGTATCGATACAATAC
1 TTATGTATCGATACAA-AC
750044 TTATGTATCGATAC--A-
1 TTATGTATCGATACAAAC
750059 -T-TGTATCGATACAAAAC
1 TTATGTATCGATAC-AAAC
750076 TTATGTATCGATACAAA
1 TTATGTATCGATACAAA
750093 TCGTTGAATT
Statistics
Matches: 43, Mismatches: 0, Indels: 13
0.77 0.00 0.23
Matches are distributed among these distances:
13 11 0.26
14 1 0.02
16 2 0.05
18 4 0.09
19 25 0.58
ACGTcount: A:0.38, C:0.15, G:0.12, T:0.35
Consensus pattern (18 bp):
TTATGTATCGATACAAAC
Found at i:750065 original size:13 final size:13
Alignment explanation
Indices: 750047--750071 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
750037 ACAATACTTA
750047 TGTATCGATACAT
1 TGTATCGATACAT
750060 TGTATCGATACA
1 TGTATCGATACA
750072 AAACTTATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:750069 original size:32 final size:32
Alignment explanation
Indices: 750028--750090 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
750018 TAGCTAATTA
*
750028 TGTATCGATACAATACTTATGTATCGATACAT
1 TGTATCGATACAAAACTTATGTATCGATACAT
750060 TGTATCGATACAAAACTTATGTATCGATACA
1 TGTATCGATACAAAACTTATGTATCGATACA
750091 AATCGTTGAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.37, C:0.16, G:0.13, T:0.35
Consensus pattern (32 bp):
TGTATCGATACAAAACTTATGTATCGATACAT
Found at i:750153 original size:20 final size:19
Alignment explanation
Indices: 750128--750188 Score: 68
Period size: 21 Copynumber: 3.1 Consensus size: 19
750118 GTTGGGACCC
750128 TGTATCGATACATTTGTGAA
1 TGTATCGATACATTTG-GAA
* **
750148 TGTATCGATGCATTCTACAAA
1 TGTATCGATACATT-T-GGAA
750169 TGTATCGATACATTTGGAA
1 TGTATCGATACATTTGGAA
750188 T
1 T
750189 TTTTTTTTTT
Statistics
Matches: 33, Mismatches: 6, Indels: 5
0.75 0.14 0.11
Matches are distributed among these distances:
19 3 0.09
20 14 0.42
21 16 0.48
ACGTcount: A:0.31, C:0.13, G:0.18, T:0.38
Consensus pattern (19 bp):
TGTATCGATACATTTGGAA
Found at i:752002 original size:13 final size:13
Alignment explanation
Indices: 751984--752014 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
751974 ACTTTTCACT
751984 ATGTATTGATACA
1 ATGTATTGATACA
*
751997 ATGTATTGATATA
1 ATGTATTGATACA
752010 ATGTA
1 ATGTA
752015 CCCTGTATCG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.39, C:0.03, G:0.16, T:0.42
Consensus pattern (13 bp):
ATGTATTGATACA
Found at i:752118 original size:13 final size:13
Alignment explanation
Indices: 752100--752124 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
752090 ACCATGATCA
752100 TGTATCGATACAG
1 TGTATCGATACAG
752113 TGTATCGATACA
1 TGTATCGATACA
752125 AAGCAATATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAG
Found at i:752280 original size:56 final size:57
Alignment explanation
Indices: 752214--752327 Score: 185
Period size: 56 Copynumber: 2.0 Consensus size: 57
752204 ATGTATCGAT
* * *
752214 ACAAATACCTATTTATTGATACTTTGAGTTATTTCAA-TTTGAAAATATATGATTTA
1 ACAAATACCTATGTATCGATACTTTGAGTTATTTCAATTTTGAAAACATATGATTTA
*
752270 ACAAATACCTATGTATCGATACTTTGAGTTATTTTAATTTTGAAAACATATGATTTA
1 ACAAATACCTATGTATCGATACTTTGAGTTATTTCAATTTTGAAAACATATGATTTA
752327 A
1 A
752328 TGCTTGAAAA
Statistics
Matches: 53, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
56 34 0.64
57 19 0.36
ACGTcount: A:0.38, C:0.10, G:0.10, T:0.43
Consensus pattern (57 bp):
ACAAATACCTATGTATCGATACTTTGAGTTATTTCAATTTTGAAAACATATGATTTA
Found at i:759238 original size:3 final size:3
Alignment explanation
Indices: 759230--759258 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
759220 CGAGTCAACT
759230 TCA TCA TCA TCA TCA TCA TCA TCA TCA TC
1 TCA TCA TCA TCA TCA TCA TCA TCA TCA TC
759259 TTTGATGGTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.31, C:0.34, G:0.00, T:0.34
Consensus pattern (3 bp):
TCA
Found at i:764240 original size:13 final size:13
Alignment explanation
Indices: 764219--764249 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
764209 GATACATTTG
*
764219 TACAATGTATCGA
1 TACATTGTATCGA
764232 TACATTGTATCGA
1 TACATTGTATCGA
764245 TACAT
1 TACAT
764250 GGATCTTTGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.35, C:0.16, G:0.13, T:0.35
Consensus pattern (13 bp):
TACATTGTATCGA
Found at i:765605 original size:923 final size:923
Alignment explanation
Indices: 760207--767491 Score: 12313
Period size: 923 Copynumber: 7.9 Consensus size: 923
760197 TTCGCCGGGC
* *
760207 GCCACCACCAAAAATGGTTTTTTTAGATTTTCATGACTTTTTCTTAAGTCGAATCCATTTCTCAT
1 GCCACCACCAAAAATGGTTTTTTTAGATTTTCATGACTTTTTGTTAAGTCGAATCCATTTCCCAT
760272 CGTCCTTAGTCGAGATAGAGTGTTTGGAAGGCAAAAAGGATGAAAAAAATCACATTTTTGTCCAA
66 CGTCCTTAGTCGAGATAGAGTGTTTGGAAGGCAAAAAGGATG-AAAAAATCACATTTTTGTCCAA
* * *
760337 ATGTATCGATACATTTCTAGAATGTATCGATACAAGGTCCCAACGATCAAAAATTTTGAATTCCA
130 ATGTATTGATACATTTGTAGAATGTATCGATACAAGGTCCCAACGGTCAAAAATTTTGAATTCCA
* *
760402 ATAATTTGTATCGATACAAACAATAAATGTATCGATACATTTGTAGAATGTACCGATACAGTGTA
195 ATAATTTGTATCGATACAAACAGTAAATGTATCGATACATTTGTAGAATGTATCGATACAGTGTA
* *
760467 TCGCTACAAAGTTACT-TCCAAGGAAATGTATCGATACATTTGTACAATGTATCGATACATTGTA
260 TCGCTACAAAGCTACTGT-CAAGGAAATTTATCGATACATTTGTACAATGTATCGATAC------
* *
760531 TTGATACATAGATCTTTGTATCGATACATCTAGGAAGTTTACCGAGATGTATCGATACATTTTAC
318 ---AT---T-GATCTTTGTATCGATACACCTAGGAAGTTTACCCAGATGTATCGATACATTTTAC
*
760596 AATGTATCGATACATTCAGGCATTTTTGACCACTTCGAGCCTTTTTTTTGCTCTTCCATTGTTCA
376 AATGTATCGATACATTCAGGCATTTTTGACCACTTCGAGCCTTTTTTCTGCTCTTCCATTGTTCA
*
760661 TTCAAAACATGTTTTTTAACACACATTTTGCATCCAGAATCATTATAAATCATGCTAAGATTCAT
441 TTCAAAACATGTTTTTTAACACACACTTTGCATCCAGAATCATTATAAATCATGCTAAGATTCAT
*
760726 CTTTGAGGTCGGATTGGAATTTAAACATGTTTTAAGATCAAATTTGCAAAAAAAGCCAAATGTCA
506 CTTTGAGGTCGGATTGGAATTTAAACATGTTTTAAGATCAAATTTGCAAAAAAAGCCAAATGTTA
* * *
760791 TTTTCTACCAAAGGACATGTCAGATTTTTTTGAATTCTGGTAGTCTCAGGTTCAGGACCACCACT
571 TTTTCCACCAAAGGACATGTCAGATTTTTCTGAATTCTGGCAGTCTCAGGTTCAGGACCACCACT
* * * *
760856 GCATTGCAGAACCAATGACAATGAGGGGTAGCCTGAGTTGGTGGCTGGTTGCCTCCTTGGGAAAA
636 GCATTGCAGAACCAATGGCAATGAGGGGCAGCCTGAGCTGGTGGCTGGTTGCCTCCTTGAGAAAA
760921 AGGGAAAATACCATAATGCCCTTGGTTTGTCCCCTAATCCTATTAGGCCAAGCTTGATTATAAGT
701 AGGGAAAATACCATAATGCCCTTGGTTTGTCCCCTAATCCTATT-GGCCAAGCTTGATTATAAGT
* *
760986 AGTGGCTGTTGGCTCAGCAAACAAGGATCTTCTTTGAGGAAAAAAAAACAGGTTTCCAGCAACAA
765 AGTGGCTGTTGGCTCAGCAAAAAAGGATCTTCTTTGA-GAAAAAAAAATAGGTTTCCAGCAACAA
* * *
761051 AAAACCC-TAGGGAAATCCTTTAGAAACAAAAAAACCAAAAAAACAAAAAAA-ACTCTATTCTAT
829 AAAACCCTTA-GGAAATCCTTTAGCAACAAAAAAACCAAAAACACAAAAAAATA--CTATTCCAT
**
761114 TAGTTTTCAAACTCCATTCTTGTAGCTCCAAAA
891 TAGTTTTCAAACTCCATTCCCGTAGCTCCAAAA
*
761147 GCCACCACCAAAAATGGTTTTTTTAGATTTTCATGACTTTTT-TTAAGTCGAATCCATTTTCCAT
1 GCCACCACCAAAAATGGTTTTTTTAGATTTTCATGACTTTTTGTTAAGTCGAATCCATTTCCCAT
*
761211 CGTCCTTAGTTGAGATAGAGTGTTTGGAAGGCAAAAAGGATGAAAAAATCACATTTTTGTCCAAA
66 CGTCCTTAGTCGAGATAGAGTGTTTGGAAGGCAAAAAGGATGAAAAAATCACATTTTTGTCCAAA
* **
761276 TGTATCGATACA--TACA-AATGTATCGATACAAGGTCCCAACGGTCAAAAATTTTGAATTCCAA
131 TGTATTGATACATTTGTAGAATGTATCGATACAAGGTCCCAACGGTCAAAAATTTTGAATTCCAA
* * * *
761338 TAATTTGTATCAATACAAATAGTAAATGTATCGATATATTTGTAGAATGTATCCATACAGTGTAT
196 TAATTTGTATCGATACAAACAGTAAATGTATCGATACATTTGTAGAATGTATCGATACAGTGTAT
* * * * *
761403 CGCTACGAAGCTATTGCCAAGGAAATGTATCTATACATTTGTACCATGTATCGACACATTGTATC
261 CGCTACAAAGCTACTGTCAAGGAAATTTATCGATACA--T-T----TG--T--ACA-A-TGTATC
* *
761468 GATACATGGATCTTTGTATCGATACATCTAGGAAGTTTACCCAGATGTATCGATACATTTTACAA
313 GATACATTGATCTTTGTATCGATACACCTAGGAAGTTTACCCAGATGTATCGATACATTTTACAA
* *
761533 TGTATCGATACATTCAGGCATCTTTGACCACTTCGAGCCTTTTTTCTGCTCTTCCATTATTCATT
378 TGTATCGATACATTCAGGCATTTTTGACCACTTCGAGCCTTTTTTCTGCTCTTCCATTGTTCATT
*
761598 CAAAAGATGTTTTTTAACACACACTTTGCATCCAGAATCATTATAAATCATGCTAAGATTCATCT
443 CAAAACATGTTTTTTAACACACACTTTGCATCCAGAATCATTATAAATCATGCTAAGATTCATCT
* *
761663 TTGAGGTCGGATTGGAATTTAAACATTTTTTAAGATCAAATTTGTAAAAAAAGCCAAATGTTATT
508 TTGAGGTCGGATTGGAATTTAAACATGTTTTAAGATCAAATTTGCAAAAAAAGCCAAATGTTATT
*
761728 TTCCACCAAAGGACATGTCAGA-TTTTCTGAATTCTGGCAGTCTCAGGTTCAGGACCACTACTGC
573 TTCCACCAAAGGACATGTCAGATTTTTCTGAATTCTGGCAGTCTCAGGTTCAGGACCACCACTGC
* * *
761792 ATTGCAGAACCAATGGCAATGAGGGGCAGCCTGAGCTGTTAGCTGGTTGCCTCCTTCAGAAAAAG
638 ATTGCAGAACCAATGGCAATGAGGGGCAGCCTGAGCTGGTGGCTGGTTGCCTCCTTGAGAAAAAG
* * * *
761857 GGAAAATACCAAAATGCCCTTGGTTTGTCCACTTAA-CCTATTGGCTAAGCTTCATTATAAGTAG
703 GGAAAATACCATAATGCCCTTGGTTTGTCC-CCTAATCCTATTGGCCAAGCTTGATTATAAGTAG
*
761921 GGGCTGTTGGCTCAGCAAAAAAGGATCTTCTTTGAGAAAAAAAAATAGGTTTCCAGCAACAAAAA
767 TGGCTGTTGGCTCAGCAAAAAAGGATCTTCTTTGAGAAAAAAAAATAGGTTTCCAGCAACAAAAA
*
761986 ACCCTTAGGAAATCCTTTAGCAACAAAAAAACCAAAAACACAAAAAAAACACTATTCCATTAGTT
832 ACCCTTAGGAAATCCTTTAGCAACAAAAAAACCAAAAACAC-AAAAAAATACTATTCCATTAGTT
*
762051 TTCAAACGCCATTCCCGTAGCTCCAAAA
896 TTCAAACTCCATTCCCGTAGCTCCAAAA
*
762079 GCCACCACCAAAAATGGTTTTTTTGGATTTTCATGACTTTTTGTTAAGTCGAATCCATTTCCCAT
1 GCCACCACCAAAAATGGTTTTTTTAGATTTTCATGACTTTTTGTTAAGTCGAATCCATTTCCCAT
* *
762144 CGTCCTTAGTCGAGATAGAGTGTTTGGTAGGCAAAAAGGATGAAAAAATCACATTTTTATCCAAA
66 CGTCCTTAGTCGAGATAGAGTGTTTGGAAGGCAAAAAGGATGAAAAAATCACATTTTTGTCCAAA
* * * * *
762209 TGTATCGGTA-AATT-CA-AATGTATCGATACAAGGTCCTAACGGTCAAAAATTTTGAATTCCAA
131 TGTATTGATACATTTGTAGAATGTATCGATACAAGGTCCCAACGGTCAAAAATTTTGAATTCCAA
*
762271 TCATTTGTATCGATACAAACAGTAAATGTATCGATACATTTGTAGAATGTATCGATACAGTGTAT
196 TAATTTGTATCGATACAAACAGTAAATGTATCGATACATTTGTAGAATGTATCGATACAGTGTAT
*
762336 CGCTACAAAGCTACTGCCAAGGAAATTTATCGATACATTTGTACAATGTATCGATACATTGATCT
261 CGCTACAAAGCTACTGTCAAGGAAATTTATCGATACATTTGTACAATGTATCGATACATTGATCT
*
762401 TTGTATCGATACATCTAGGAAGTTTACCCAGATGTATCGATACATTTTACAATGTATCGATACAT
326 TTGTATCGATACACCTAGGAAGTTTACCCAGATGTATCGATACATTTTACAATGTATCGATACAT
762466 TCAGGCATTTTTGACCACTTCGAGCCTTTTTTCTGCTCTTCCATTGTTCATTCAAAACATGTTTT
391 TCAGGCATTTTTGACCACTTCGAGCCTTTTTTCTGCTCTTCCATTGTTCATTCAAAACATGTTTT
762531 TTAACACACACTTTGCATCCAGAATCATTATAAATCATGCTAAGATTCATCTTTGAGGTCGGATT
456 TTAACACACACTTTGCATCCAGAATCATTATAAATCATGCTAAGATTCATCTTTGAGGTCGGATT
762596 GGAATTTAAACATGTTTTAAGATCAAATTTGCAAAAAAAGCCAAATGTTATTTTCCACCAAAGGA
521 GGAATTTAAACATGTTTTAAGATCAAATTTGCAAAAAAAGCCAAATGTTATTTTCCACCAAAGGA
*
762661 CATGTCAGATTTTT-TGAATTCTGGCAGTCTCAGGTTTAGGACCACCACTGCATTGCAGAACCAA
586 CATGTCAGATTTTTCTGAATTCTGGCAGTCTCAGGTTCAGGACCACCACTGCATTGCAGAACCAA
* *
762725 TGGCAATGAGGGGCAGCCTGAGCTGTTGGCTGGTTGCCTCCTTGAGAAAAAGGGAAAATAGCATA
651 TGGCAATGAGGGGCAGCCTGAGCTGGTGGCTGGTTGCCTCCTTGAGAAAAAGGGAAAATACCATA
*
762790 ATGCCCTTGGTTTGTCCCCTAATCCTTTTGGCCAAGCTTGATTATAAGTAGTGGCTGTTGGCTCA
716 ATGCCCTTGGTTTGTCCCCTAATCCTATTGGCCAAGCTTGATTATAAGTAGTGGCTGTTGGCTCA
* *
762855 GCAAAAAAGGATCTTCTTTGAG-AAAAAAAATAGGTTTCCAGCAACAAAAAACACATAGGAAATC
781 GCAAAAAAGGATCTTCTTTGAGAAAAAAAAATAGGTTTCCAGCAACAAAAAACCCTTAGGAAATC
762919 CTTTAGCAACAAAAAAACCAAAAACACAAAAAAATACTATTCCATTAGTTTTCAAACTCCATTCC
846 CTTTAGCAACAAAAAAACCAAAAACACAAAAAAATACTATTCCATTAGTTTTCAAACTCCATTCC
762984 CGTAGCTCCAAAA
911 CGTAGCTCCAAAA
* *
762997 GCCACCACCAAAAACGGTTTTTTTAGATTTTCATGACATTTTGTTAAGTCGAATCCATTTCCCAT
1 GCCACCACCAAAAATGGTTTTTTTAGATTTTCATGACTTTTTGTTAAGTCGAATCCATTTCCCAT
* *
763062 CATCCTTAGTCGAGATAGAGTGTTAGGAAGGCAAAAAGGATGAAAAAATCACATTTTTGTCCAAA
66 CGTCCTTAGTCGAGATAGAGTGTTTGGAAGGCAAAAAGGATGAAAAAATCACATTTTTGTCCAAA
*
763127 TGTATTGATACATTTGTAGAATGTATCGATACAAGGTCCCAACGTTCAAAAATTTTGAATTCCAA
131 TGTATTGATACATTTGTAGAATGTATCGATACAAGGTCCCAACGGTCAAAAATTTTGAATTCCAA
*
763192 TAATTTGTATCGATACAAACAGTAAATGTATCGATACGTTTGTAGAATGTATCGATACAGTGTAT
196 TAATTTGTATCGATACAAACAGTAAATGTATCGATACATTTGTAGAATGTATCGATACAGTGTAT
763257 CGCTACAAAGCTACTGTCAAGGAAATTTATCGATACATTTGTACAATGTATCGATACATTGATCT
261 CGCTACAAAGCTACTGTCAAGGAAATTTATCGATACATTTGTACAATGTATCGATACATTGATCT
* * * *
763322 TTGTATCGATACACCTAGGAAGTTTACCCAGATGTATCGATGCATTTTAGAATGTATCAACACAT
326 TTGTATCGATACACCTAGGAAGTTTACCCAGATGTATCGATACATTTTACAATGTATCGATACAT
*
763387 TCAGGCATTTTTGACCACTTCGAGCCTTTTTTCTGCTCTTCCAATGTTCATTCAAAACATGTTTT
391 TCAGGCATTTTTGACCACTTCGAGCCTTTTTTCTGCTCTTCCATTGTTCATTCAAAACATGTTTT
763452 TTAACACACACTTTGCATCCAGAATCATTATAAATCATGCTAAGATTCATCTTTGAGGTCGGATT
456 TTAACACACACTTTGCATCCAGAATCATTATAAATCATGCTAAGATTCATCTTTGAGGTCGGATT
* *
763517 GCAATTTAAACATGTTTTAAGATCAAATTTGCAAAAAAAGCCAAATGTTATTTTTCACCAAAGGA
521 GGAATTTAAACATGTTTTAAGATCAAATTTGCAAAAAAAGCCAAATGTTATTTTCCACCAAAGGA
* *
763582 CATGTCAGATTTTTCAGAATTCTGGCAGTCTCAGGTTCAGGACCACCACTACATTGCAGAACCAA
586 CATGTCAGATTTTTCTGAATTCTGGCAGTCTCAGGTTCAGGACCACCACTGCATTGCAGAACCAA
*
763647 TGGCAATGAGGGGCAG-CTGAGCTGGTGGCTGGTTGCCTCCTTGGGAAAAAGGGAAAATACCATA
651 TGGCAATGAGGGGCAGCCTGAGCTGGTGGCTGGTTGCCTCCTTGAGAAAAAGGGAAAATACCATA
*
763711 ATGCCCTTGGTTTGTCCCCTAATCCTATTGGCCAAGCTTGATTATAAGTAGTGGCTATTGGCTCA
716 ATGCCCTTGGTTTGTCCCCTAATCCTATTGGCCAAGCTTGATTATAAGTAGTGGCTGTTGGCTCA
*
763776 GCAAAAAAGGATCTTCTTTGAG-AAAAAAAATAGGTTTCCAGCAACAAAAAACCCTTTGGAAATC
781 GCAAAAAAGGATCTTCTTTGAGAAAAAAAAATAGGTTTCCAGCAACAAAAAACCCTTAGGAAATC
* * * *
763840 CTTGAGCAACAAGAAAACCAAAAACACAAAAAAATACTAGTACATTAGTTTTCAAACTCCATTCC
846 CTTTAGCAACAAAAAAACCAAAAACACAAAAAAATACTATTCCATTAGTTTTCAAACTCCATTCC
763905 CGTAGCTCCAAAA
911 CGTAGCTCCAAAA
763918 GCCACCACCAAAAATGGTTTTTTTAGATTTTCATGACTTTTTGTTAAGTCGAATCCATTTCCCAT
1 GCCACCACCAAAAATGGTTTTTTTAGATTTTCATGACTTTTTGTTAAGTCGAATCCATTTCCCAT
*
763983 CGTCCTTAGTCGAGATAGAGTGTTTGGAAGGCAAAAAGGATGAAAAAATCACATGTTTGTCCAAA
66 CGTCCTTAGTCGAGATAGAGTGTTTGGAAGGCAAAAAGGATGAAAAAATCACATTTTTGTCCAAA
764048 TGTATTGATACATTTGTAGAATGTATCGATACAAGGTCCCAACGGTCAAAAATTTTGAATTCCAA
131 TGTATTGATACATTTGTAGAATGTATCGATACAAGGTCCCAACGGTCAAAAATTTTGAATTCCAA
* *
764113 TAATTTGTATCGATGCAAACAGTAAATGTATCGATACGTTTGTAGAATGTATCGATACAGTGTAT
196 TAATTTGTATCGATACAAACAGTAAATGTATCGATACATTTGTAGAATGTATCGATACAGTGTAT
* *
764178 CGCTACAAAGCTACTGCCAAGGAAATGTATCGATACATTTGTACAATGTATCGATACATTGTATC
261 CGCTACAAAGCTACTGTCAAGGAAATTTATCGATACATTTGTACAATGTATCG----A---TA-C
* * *
764243 GATACATGGATCTTTGTATCGATACATCTAGGAAGTTTACCTAGATGTATCGATACATTTTATAA
318 -AT---T-GATCTTTGTATCGATACACCTAGGAAGTTTACCCAGATGTATCGATACATTTTACAA
* *
764308 TGTATCGATACACTCAGGCATTTTTGACCATTTCGAGCCTTTTTTCTGCTCTTCCATTGTTCATT
378 TGTATCGATACATTCAGGCATTTTTGACCACTTCGAGCCTTTTTTCTGCTCTTCCATTGTTCATT
*
764373 CAAAACATGTTTTTTAACACACACTTTGCATCCAAAATCATTATAAATCATGCTAAGATTCATCT
443 CAAAACATGTTTTTTAACACACACTTTGCATCCAGAATCATTATAAATCATGCTAAGATTCATCT
*
764438 TTGAGGTCGGATTGGAATTTAAACATGTTTTAAGATCAAATTTGTAAAAAAAGCCAAATGTTATT
508 TTGAGGTCGGATTGGAATTTAAACATGTTTTAAGATCAAATTTGCAAAAAAAGCCAAATGTTATT
764503 TTCCACCAAAGGACATGTCAGATTTTTCTGAATTCTGGCAGTCTCAGGTTCAGGACCACCACTGC
573 TTCCACCAAAGGACATGTCAGATTTTTCTGAATTCTGGCAGTCTCAGGTTCAGGACCACCACTGC
* * *
764568 ATTGCAGAACCAATGGCAATGAGGGGCAGCCTGAGCTGTTGGCTGGTTGCCTCCATCAGAAAAAG
638 ATTGCAGAACCAATGGCAATGAGGGGCAGCCTGAGCTGGTGGCTGGTTGCCTCCTTGAGAAAAAG
764633 GGAAAATACCATAATGCCCTTGGTTTGTCCCCTAATCCTATTGGCCAAGCTTGATTATAAGTAGT
703 GGAAAATACCATAATGCCCTTGGTTTGTCCCCTAATCCTATTGGCCAAGCTTGATTATAAGTAGT
*
764698 GGCTATTGGCTCAGCAAAAAAGGATCTTCTTTGAGAAAAAAAAATAGGTTTCCAGCAACAAAAAA
768 GGCTGTTGGCTCAGCAAAAAAGGATCTTCTTTGAGAAAAAAAAATAGGTTTCCAGCAACAAAAAA
* * * *
764763 CCCTTTGGAAATCCTTGAGCAACAAGAAAACCAAAAACACAAAAAAATTCTATTCCATTAGTTTT
833 CCCTTAGGAAATCCTTTAGCAACAAAAAAACCAAAAACACAAAAAAATACTATTCCATTAGTTTT
764828 CAAACTCCATTCCCGTAGCTCCAAAA
898 CAAACTCCATTCCCGTAGCTCCAAAA
764854 GCCACCACCAAAAATGGTTTTTTTAGATTTTCATGACTTTTTGTTAAGTCGAATCCATTTCCCAT
1 GCCACCACCAAAAATGGTTTTTTTAGATTTTCATGACTTTTTGTTAAGTCGAATCCATTTCCCAT
* * *
764919 CATCTTTAGTCGAGATAGAGTATTTGGAAGGCAAAAAGGATGAAAAAATCACATTTTTGTCCAAA
66 CGTCCTTAGTCGAGATAGAGTGTTTGGAAGGCAAAAAGGATGAAAAAATCACATTTTTGTCCAAA
* * ** *
764984 TGTATTGATAGATTTGTACAATGTATCGATACAAGGTCCCAACATTTAAAAATTTTGAATTCCAA
131 TGTATTGATACATTTGTAGAATGTATCGATACAAGGTCCCAACGGTCAAAAATTTTGAATTCCAA
* **
765049 TAATTTGTATTGATACAAACAGTAAATGTATCGATATGTTTGTAGAATGTATCGATACAGTGTAT
196 TAATTTGTATCGATACAAACAGTAAATGTATCGATACATTTGTAGAATGTATCGATACAGTGTAT
*
765114 CGCTACAAAGCTACTGTCAAGGAAATTTATCGATACATTTTTACAATGTATCGATACATTGATCT
261 CGCTACAAAGCTACTGTCAAGGAAATTTATCGATACATTTGTACAATGTATCGATACATTGATCT
* *
765179 TTGTATCGATACACCTAGGAAGTTTACCCAGATGTATCGATACATTTCACAATATATCGACT-CA
326 TTGTATCGATACACCTAGGAAGTTTACCCAGATGTATCGATACATTTTACAATGTATCGA-TACA
765243 TTCAGGCATTTTTGACCACTTCGAGCCTTTTTTCTGCTCTTCCATTGTTCATTCAAAACATGTTT
390 TTCAGGCATTTTTGACCACTTCGAGCCTTTTTTCTGCTCTTCCATTGTTCATTCAAAACATGTTT
* *
765308 TTTAACACACATTTTGCATCCAGAATCAATATAAATCATGCTAAGATTCATCTTTGAGGTCGGAT
455 TTTAACACACACTTTGCATCCAGAATCATTATAAATCATGCTAAGATTCATCTTTGAGGTCGGAT
*
765373 TGGAATTTAAACATGTTTTAAGATCAAATTTGCAAAAAAAGCCAAATTTTATTTTCCACCAAAGG
520 TGGAATTTAAACATGTTTTAAGATCAAATTTGCAAAAAAAGCCAAATGTTATTTTCCACCAAAGG
*
765438 ACATGTCAGATTTTTCTGAATTCTGGCAGTCTTAGGTTCAGGACCACCACTGCATTGCAGAACCA
585 ACATGTCAGATTTTTCTGAATTCTGGCAGTCTCAGGTTCAGGACCACCACTGCATTGCAGAACCA
*
765503 ATGGCAATGAGGGGCAGCCTGAGCTGGTGGCTGGTTGCCTCCTTGGGAAAAAGGGAAAATACCAT
650 ATGGCAATGAGGGGCAGCCTGAGCTGGTGGCTGGTTGCCTCCTTGAGAAAAAGGGAAAATACCAT
* *
765568 AATGCCCTTGGTTTATCCCCTAATCCTATTAGCCAAGCTTGATTATAAGTAGTGGCTGTTGGCTC
715 AATGCCCTTGGTTTGTCCCCTAATCCTATTGGCCAAGCTTGATTATAAGTAGTGGCTGTTGGCTC
* *
765633 AGCAAAAAAGGATCTTCTTTGAGAGAAAAAAA-AGGTTTCCAGCAACTAAAAACCCTTAGGAAAT
780 AGCAAAAAAGGATCTTCTTTGAGAAAAAAAAATAGGTTTCCAGCAACAAAAAACCCTTAGGAAAT
* *
765697 CCTTTAGCAACAAAAAAACCTAAAACACAAAAAAAAACACTATTCCATTAGTTTTCAAACTCCAT
845 CCTTTAGCAACAAAAAAACC-AAAA-ACACAAAAAAATACTATTCCATTAGTTTTCAAACTCCAT
*
765762 TCTCGTAGCTCCAAAA
908 TCCCGTAGCTCCAAAA
765778 GCCACCACCAAAAATGGTTTTTTTAGATTTTCATGACTTTTTGTTAAGTCGAATCCATTTCCCAT
1 GCCACCACCAAAAATGGTTTTTTTAGATTTTCATGACTTTTTGTTAAGTCGAATCCATTTCCCAT
*
765843 CGTCCTTAGTCGAGATAGAGCGTTTGGAAGGCAAAAAGGATGAAAAAATCACATTTTTGTCCAAA
66 CGTCCTTAGTCGAGATAGAGTGTTTGGAAGGCAAAAAGGATGAAAAAATCACATTTTTGTCCAAA
765908 TGTATTGATACATTTGTAGAATGTATCGATACAAGGTCCCAACGGTCAAAAATTTTGAATTCCAA
131 TGTATTGATACATTTGTAGAATGTATCGATACAAGGTCCCAACGGTCAAAAATTTTGAATTCCAA
*
765973 TAATTTGTATCGATACAAACAGTAAATGTATCGATACATTTGTAGAATGTATCAATACAGTGTAT
196 TAATTTGTATCGATACAAACAGTAAATGTATCGATACATTTGTAGAATGTATCGATACAGTGTAT
* *
766038 CGCTACAAAGCTACTGTCAAGGAAATTTATCGATATATTTGTACAATGTATCCATACATTGATCT
261 CGCTACAAAGCTACTGTCAAGGAAATTTATCGATACATTTGTACAATGTATCGATACATTGATCT
* * * *
766103 TTGTATCGATACACCTAGGAAGCTTACCCAGATGTATCGATACATTTCACAATATATCGACACAT
326 TTGTATCGATACACCTAGGAAGTTTACCCAGATGTATCGATACATTTTACAATGTATCGATACAT
*
766168 TCAGGCATTTTTGACCACTTCGAGTCTTTTTTCTGCTCTTCCATTGTTCATTCAAAACATGTTTT
391 TCAGGCATTTTTGACCACTTCGAGCCTTTTTTCTGCTCTTCCATTGTTCATTCAAAACATGTTTT
766233 TTAACACACACTTTGCATCCAGAATCATTATAAATCATGCTAAGATTCATCTTTGAGGTCGGATT
456 TTAACACACACTTTGCATCCAGAATCATTATAAATCATGCTAAGATTCATCTTTGAGGTCGGATT
* *
766298 GGAATTTCAACATGTTTTAAGATCAAATTTGCAAAAAAAGCCAAATTTTATTTTCCACCAAAGGA
521 GGAATTTAAACATGTTTTAAGATCAAATTTGCAAAAAAAGCCAAATGTTATTTTCCACCAAAGGA
* *
766363 CATGTCAGATTTTTCTGAATTCTGACAGTCTCAGGTTCAGGACCACCACTGCATTACAGAACCAA
586 CATGTCAGATTTTTCTGAATTCTGGCAGTCTCAGGTTCAGGACCACCACTGCATTGCAGAACCAA
* *
766428 TGGCAATGAGGGGCAGCCTGAGCTGTTGGCTGGTTGCCTCCTTCAGAAAAAGGGAAAATACCATA
651 TGGCAATGAGGGGCAGCCTGAGCTGGTGGCTGGTTGCCTCCTTGAGAAAAAGGGAAAATACCATA
766493 ATGCCCTTGGTTTGTCCCCTAATCCTATTGGCCAAGCTTGATTATAAGTAGTGGCTGTTGGCTCA
716 ATGCCCTTGGTTTGTCCCCTAATCCTATTGGCCAAGCTTGATTATAAGTAGTGGCTGTTGGCTCA
766558 GCAAAAAAGGATCTTCTTTGAG-AAAAAAAATAGGTTTCCAGCAACAAAAAACCCTTAGGAAATC
781 GCAAAAAAGGATCTTCTTTGAGAAAAAAAAATAGGTTTCCAGCAACAAAAAACCCTTAGGAAATC
* * * *
766622 CTTTAGCAGCAAAAAAACCAAAAACACAAAAAAAATTCTATTCGATTAGTTTTCAATCTCCATTC
846 CTTTAGCAACAAAAAAACCAAAAACAC-AAAAAAATACTATTCCATTAGTTTTCAAACTCCATTC
766687 CCGTAGCTCCAAAA
910 CCGTAGCTCCAAAA
*
766701 GCCACCACCAAAAATGGTTTTTTTAGATTTTCATGACTTTTTGTTAAGTTGAATCCATTTCCCAT
1 GCCACCACCAAAAATGGTTTTTTTAGATTTTCATGACTTTTTGTTAAGTCGAATCCATTTCCCAT
*
766766 CATCCTTAGTCGAGATAGAGTGTTTGGAAGGCAAAAAGGATGAAAAAATCACATTTTTGTCCAAA
66 CGTCCTTAGTCGAGATAGAGTGTTTGGAAGGCAAAAAGGATGAAAAAATCACATTTTTGTCCAAA
* * * *
766831 TGTATTGATAGATTTGTACAATGTATCGATACAAGGTCCCAACGTTTAAAAATTTTGAATTCCAA
131 TGTATTGATACATTTGTAGAATGTATCGATACAAGGTCCCAACGGTCAAAAATTTTGAATTCCAA
* *
766896 TAATTTGTATCGATACAAACAGTAAAAGTATCGATACGTTTGTAGAATGTATCGATACAGTGTAT
196 TAATTTGTATCGATACAAACAGTAAATGTATCGATACATTTGTAGAATGTATCGATACAGTGTAT
766961 CGCTACAAAGCTACTGTCAAGGAAATTTATCGATACATTTGTACAATGTATCGATACATTGATCT
261 CGCTACAAAGCTACTGTCAAGGAAATTTATCGATACATTTGTACAATGTATCGATACATTGATCT
* * *
767026 TTGTATCGATACACCTAGGAAGTTTACCCAGATGTATCGATACATTTCACAATATATCGACACAT
326 TTGTATCGATACACCTAGGAAGTTTACCCAGATGTATCGATACATTTTACAATGTATCGATACAT
767091 TCAGGCATTTTTGACCACTTCGAGCCTTTTTTCTGCTCTTCCATTGTTCATTCAAAACATGTTTT
391 TCAGGCATTTTTGACCACTTCGAGCCTTTTTTCTGCTCTTCCATTGTTCATTCAAAACATGTTTT
* * *
767156 TTAACACACACTTTGCATCCATAATCATTATAAATCATGCCAAGATTCATTTTTGAGGTCGGATT
456 TTAACACACACTTTGCATCCAGAATCATTATAAATCATGCTAAGATTCATCTTTGAGGTCGGATT
* *
767221 GGAATTTAAACATGTTTTAAGATCAAATTTGCAAAAAAAGCCAAATTTTATTTTCCGCCAAAGGA
521 GGAATTTAAACATGTTTTAAGATCAAATTTGCAAAAAAAGCCAAATGTTATTTTCCACCAAAGGA
* *
767286 CATGTCAGATTTTTCTGAATTCTGGCAGTCTTAGGTTCAGGACCACCACTACATTGCAGAACCAA
586 CATGTCAGATTTTTCTGAATTCTGGCAGTCTCAGGTTCAGGACCACCACTGCATTGCAGAACCAA
*
767351 TGGCAATGAGAGGCAGCCTGAGCTGGTGGCTGGTTGCCTCCTTGAGAAAAAGGGAAAATACCATA
651 TGGCAATGAGGGGCAGCCTGAGCTGGTGGCTGGTTGCCTCCTTGAGAAAAAGGGAAAATACCATA
*
767416 ATGCCCTTGGTTTATCCCCTAATCCTATTGGCCAAGCTTGATTATAAGTAGTGGCTGTTGGCTCA
716 ATGCCCTTGGTTTGTCCCCTAATCCTATTGGCCAAGCTTGATTATAAGTAGTGGCTGTTGGCTCA
767481 GCAAAAAAGGA
781 GCAAAAAAGGA
767492 CATGTCAGAT
Statistics
Matches: 6029, Mismatches: 268, Indels: 113
0.94 0.04 0.02
Matches are distributed among these distances:
918 180 0.03
919 74 0.01
920 469 0.08
921 989 0.16
922 117 0.02
923 1293 0.21
924 875 0.15
925 1 0.00
926 2 0.00
927 2 0.00
928 3 0.00
929 3 0.00
930 3 0.00
931 1 0.00
932 146 0.02
933 295 0.05
934 465 0.08
935 534 0.09
936 417 0.07
937 1 0.00
938 36 0.01
939 63 0.01
940 42 0.01
942 2 0.00
944 1 0.00
946 3 0.00
947 1 0.00
948 11 0.00
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31
Consensus pattern (923 bp):
GCCACCACCAAAAATGGTTTTTTTAGATTTTCATGACTTTTTGTTAAGTCGAATCCATTTCCCAT
CGTCCTTAGTCGAGATAGAGTGTTTGGAAGGCAAAAAGGATGAAAAAATCACATTTTTGTCCAAA
TGTATTGATACATTTGTAGAATGTATCGATACAAGGTCCCAACGGTCAAAAATTTTGAATTCCAA
TAATTTGTATCGATACAAACAGTAAATGTATCGATACATTTGTAGAATGTATCGATACAGTGTAT
CGCTACAAAGCTACTGTCAAGGAAATTTATCGATACATTTGTACAATGTATCGATACATTGATCT
TTGTATCGATACACCTAGGAAGTTTACCCAGATGTATCGATACATTTTACAATGTATCGATACAT
TCAGGCATTTTTGACCACTTCGAGCCTTTTTTCTGCTCTTCCATTGTTCATTCAAAACATGTTTT
TTAACACACACTTTGCATCCAGAATCATTATAAATCATGCTAAGATTCATCTTTGAGGTCGGATT
GGAATTTAAACATGTTTTAAGATCAAATTTGCAAAAAAAGCCAAATGTTATTTTCCACCAAAGGA
CATGTCAGATTTTTCTGAATTCTGGCAGTCTCAGGTTCAGGACCACCACTGCATTGCAGAACCAA
TGGCAATGAGGGGCAGCCTGAGCTGGTGGCTGGTTGCCTCCTTGAGAAAAAGGGAAAATACCATA
ATGCCCTTGGTTTGTCCCCTAATCCTATTGGCCAAGCTTGATTATAAGTAGTGGCTGTTGGCTCA
GCAAAAAAGGATCTTCTTTGAGAAAAAAAAATAGGTTTCCAGCAACAAAAAACCCTTAGGAAATC
CTTTAGCAACAAAAAAACCAAAAACACAAAAAAATACTATTCCATTAGTTTTCAAACTCCATTCC
CGTAGCTCCAAAA
Found at i:767742 original size:289 final size:289
Alignment explanation
Indices: 767223--767780 Score: 1062
Period size: 289 Copynumber: 1.9 Consensus size: 289
767213 GTCGGATTGG
*
767223 AATTTAAACATGTTTTAAGATCAAATTTGCAAAAAAAGCCAAATTTTATTTTCCGCCAAAGGACA
1 AATTTAAACATGTTTTAAGATCAAATTTGCAAAAAAAGCCAAATTTTATTTTCCACCAAAGGACA
767288 TGTCAGATTTTTCTGAATTCTGGCAGTCTTAGGTTCAGGACCACCACTACATTGCAGAACCAATG
66 TGTCAGATTTTTCTGAATTCTGGCAGTCTTAGGTTCAGGACCACCACTACATTGCAGAACCAATG
*
767353 GCAATGAGAGGCAGCCTGAGCTGGTGGCTGGTTGCCTCCTTGAGAAAAAGGGAAAATACCATAAT
131 GCAATGAGAGGCAGCCTGAGCTGGTGGCTGGTCGCCTCCTTGAGAAAAAGGGAAAATACCATAAT
767418 GCCCTTGGTTTATCCCCTAATCCTATTGGCCAAGCTTGATTATAAGTAGTGGCTGTTGGCTCAGC
196 GCCCTTGGTTTATCCCCTAATCCTATTGGCCAAGCTTGATTATAAGTAGTGGCTGTTGGCTCAGC
767483 AAAAAAGGACATGTCAGATTTTTCTGACA
261 AAAAAAGGACATGTCAGATTTTTCTGACA
767512 AATTTAAACATGTTTTAAGATCAAATTTGCAAAAAAAGCCAAATTTTATTTTCCACCAAAGGACA
1 AATTTAAACATGTTTTAAGATCAAATTTGCAAAAAAAGCCAAATTTTATTTTCCACCAAAGGACA
*
767577 TGTCAGATTTTTCTGAATTCTGGCAGTCTTAGGTTCAGGACCACCACTGCATTGCAGAACCAATG
66 TGTCAGATTTTTCTGAATTCTGGCAGTCTTAGGTTCAGGACCACCACTACATTGCAGAACCAATG
* *
767642 GCAATGAGGGGCAGCCTGAGCTGGTGGCTGGTCGCCTCCTTGGGAAAAAGGGAAAATACCATAAT
131 GCAATGAGAGGCAGCCTGAGCTGGTGGCTGGTCGCCTCCTTGAGAAAAAGGGAAAATACCATAAT
*
767707 GCCCTTGGTTTATCCCCTAATCCTATTGGCCAAGCTTGATTATAAGTAGTGGCTGTTGGCTCATC
196 GCCCTTGGTTTATCCCCTAATCCTATTGGCCAAGCTTGATTATAAGTAGTGGCTGTTGGCTCAGC
767772 AAAAAAGGA
261 AAAAAAGGA
767781 TCTTCTTTGA
Statistics
Matches: 263, Mismatches: 6, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
289 263 1.00
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.28
Consensus pattern (289 bp):
AATTTAAACATGTTTTAAGATCAAATTTGCAAAAAAAGCCAAATTTTATTTTCCACCAAAGGACA
TGTCAGATTTTTCTGAATTCTGGCAGTCTTAGGTTCAGGACCACCACTACATTGCAGAACCAATG
GCAATGAGAGGCAGCCTGAGCTGGTGGCTGGTCGCCTCCTTGAGAAAAAGGGAAAATACCATAAT
GCCCTTGGTTTATCCCCTAATCCTATTGGCCAAGCTTGATTATAAGTAGTGGCTGTTGGCTCAGC
AAAAAAGGACATGTCAGATTTTTCTGACA
Found at i:769298 original size:923 final size:922
Alignment explanation
Indices: 767512--769626 Score: 3888
Period size: 923 Copynumber: 2.3 Consensus size: 922
767502 TTTTCTGACA
767512 AATTTAAACATGTTTTAAGATCAAATTTGCAAAAAAAGCCAAATTTTATTTTCCACCAAAGGACA
1 AATTTAAACATGTTTTAAGATCAAATTTGCAAAAAAAGCCAAATTTTATTTTCCACCAAAGGACA
767577 TGTCAGATTTTTCTGAATTCTGGCAGTCTTAGGTTCAGGACCACCACTGCATTGCAGAACCAATG
66 TGTCAGATTTTTCTGAATTCTGGCAGTCTTAGGTTCAGGACCACCACTGCATTGCAGAACCAATG
*
767642 GCAATGAGGGGCAGCCTGAGCTGGTGGCTGGTCGCCTCCTTGGGAAAAAGGGAAAATACCATAAT
131 GCAATGAGGGGCAGCCTGAGCT-GTGGCTGGTTGCCTCCTTGGGAAAAAGGGAAAATACCATAAT
*
767707 GCCCTTGGTTTATCCCCTAATCCTATTGGCCAAGCTTGATTATAAGTAGTGGCTGTTGGCTCATC
195 GCCCTTGGTTTATCCCCTAATCCTATTGGCCAAGCTTGATTATAAGTAGTGGCTGTTGGCTCAGC
*
767772 AAAAAAGGATCTTCTTTGAGAAAAAAAAAAGGTTTCCAGCAACTAAAAACCCTTAGGAAATCCTT
260 AAAAAAGGATCTTCTTTGAGAAAAAAAAAAGGTTTCCAGCAACAAAAAACCCTTAGGAAATCCTT
* *
767837 TAGCAACAAAAAAACCTAAAACACAAAAAAAACACTATTCCATTAGTTTTCAAACTCCATTCTCG
325 TAGCAACAAAAAAACCAAAAACACAAAAAAAACACTATTCCATTAGTTTTCAAACTCCATTCCCG
*
767902 TAGCTCCAAAAGCCACCACCAAAAATGGTTTTTTTAGATTTTCATGACTTTTTGTTAAGTCGAAT
390 TAGCTCCAAAAGCCACCACCAAAAATGGTTTTTTTAGATTTTCATGACTTTCTGTTAAGTCGAAT
*
767967 CCATTTCCCATCGTCCTTAGTCGAGATAGAGCGTTTGGAAGGCAAAAAGGATGAAAAAATCACAT
455 CCATTTCCCATCATCCTTAGTCGAGATAGAGCGTTTGGAAGGCAAAAAGGATGAAAAAATCACAT
*
768032 TTTTGTCCAAATATATTGATACATTTGTAGAATGTATCGATACAAGGTCCCAACGGTCAAAAATT
520 TTTTGTCCAAATATATTGATACATTTGTACAATGTATCGATACAAGGTCCCAACGGTCAAAAATT
*
768097 TTGAATTCCAATAATTTGTATCGATACAAACAGTAAATGTATCGATACATTTGTAGAATGTATTA
585 TTGAATTCCAATAATTTGTATCGATACAAACAGTAAATGTATCGATACATTTGTAGAATGTATCA
768162 ATACAGTGTATCGCTACAAAGCTACTGTCAAGGAAATTTATCGATACATTTGTACAATGTATCGA
650 ATACAGTGTATCGCTACAAAGCTACTGTCAAGGAAATTTATCGATACATTTGTACAATGTATCGA
768227 TACATTGATCTTTGTATCGATACACCTAGGAAGTTTACCCAGATGTATCGATACATTTCACAATA
715 TACATTGATCTTTGTATCGATACACCTAGGAAGTTTACCCAGATGTATCGATACATTTCACAATA
*
768292 TATCGACACATTCAGGCATTTTTGACCACTTCGAGTCTTTTTTCTGCTCTTCCATTGTTCATTCA
780 TATCGACACATTCAGGCATTTTTGACCACTTCGAGCCTTTTTTCTGCTCTTCCATTGTTCATTCA
768357 AAACATGTTTTTTAACACACACTTTGCATCCAGAATCATTATAAATCATGCTAAGATTCATCTTT
845 AAACATGTTTTTTAACACACACTTTGCATCCAGAATCATTATAAATCATGCTAAGATTCATCTTT
768422 GAGGTCGGATTGG
910 GAGGTCGGATTGG
768435 AATTTAAACATGTTTTAAGATCAAATTTGCAAAAAAAGCCAAATTTTATTTTCCACCAAAGGACA
1 AATTTAAACATGTTTTAAGATCAAATTTGCAAAAAAAGCCAAATTTTATTTTCCACCAAAGGACA
*
768500 TGTCAGATTTTTCTGAATTCTGGCAGTCTCAGGTTCAGGACCACCACTGCATTGCAGAACCAATG
66 TGTCAGATTTTTCTGAATTCTGGCAGTCTTAGGTTCAGGACCACCACTGCATTGCAGAACCAATG
**
768565 GCAATGAGGGGCAGCCTGAGCTGTTGGCTGGTTGCCTCCTTCAGAAAAAGGGAAAATACCATAAT
131 GCAATGAGGGGCAGCCTGAGCTG-TGGCTGGTTGCCTCCTTGGGAAAAAGGGAAAATACCATAAT
* *
768630 GCCCTTGGTTTGTCCCCTAATCCTGTTGGCCAAGCTTGATTATAAGTAGTGGCTGTTGGCTCAGC
195 GCCCTTGGTTTATCCCCTAATCCTATTGGCCAAGCTTGATTATAAGTAGTGGCTGTTGGCTCAGC
* *
768695 AAAAAAGGATCTTCTTTGAGAAAAAAAATAGGTTTCCAGCAACAAAAAATCCTTAGGAAATCCTT
260 AAAAAAGGATCTTCTTTGAGAAAAAAAAAAGGTTTCCAGCAACAAAAAACCCTTAGGAAATCCTT
* * **
768760 TAGCAGCAAGAAAACCAAAAACACAAAAAAAATTCTATTCCATTAGTTTTCAAACTCCATTCCCG
325 TAGCAACAAAAAAACCAAAAACACAAAAAAAACACTATTCCATTAGTTTTCAAACTCCATTCCCG
*
768825 TAGCTCCAAAAGCCACCACCAAAAATGGTTTTTTTAGATTTTCATGACTTTCTGTTAAGTTGAAT
390 TAGCTCCAAAAGCCACCACCAAAAATGGTTTTTTTAGATTTTCATGACTTTCTGTTAAGTCGAAT
*
768890 CCATTTCCCATCATCCTTAGTCGAGATAGAGTGTTTGGAAGGCAAAAAGGATGAAAAAATCACAT
455 CCATTTCCCATCATCCTTAGTCGAGATAGAGCGTTTGGAAGGCAAAAAGGATGAAAAAATCACAT
* ** * *
768955 TTTTGTCCAAATGTATTGATAGGTTTGTACAATGTATCGATACAAGGTCCCAACGTTTAAAAATT
520 TTTTGTCCAAATATATTGATACATTTGTACAATGTATCGATACAAGGTCCCAACGGTCAAAAATT
*
769020 TTGAATTCCAATAATTTGTATCGATACAAACAGTAAATGTATCGATACATTTGTAGAATGTATCG
585 TTGAATTCCAATAATTTGTATCGATACAAACAGTAAATGTATCGATACATTTGTAGAATGTATCA
769085 ATACAGTGTATCGCTACAAAGCTACTGTCAAGGAAATTTATCGATACATTTGTACAATGTATCGA
650 ATACAGTGTATCGCTACAAAGCTACTGTCAAGGAAATTTATCGATACATTTGTACAATGTATCGA
769150 TACATTGATCTTTGTATCGATACACCTAGGAAGTTTACCCAGATGTATCGATACATTTCACAATA
715 TACATTGATCTTTGTATCGATACACCTAGGAAGTTTACCCAGATGTATCGATACATTTCACAATA
769215 TATCGACACATTCAGGCATTTTTGACCACTTCGAGCCTTTTTTCTGCTCTTCCATTGTTCATTCA
780 TATCGACACATTCAGGCATTTTTGACCACTTCGAGCCTTTTTTCTGCTCTTCCATTGTTCATTCA
* *
769280 AAACATGTTTTTTAACACAGACTTTGCATCCAGAATCATTATAAATCATGCTAAGATTCATTTTT
845 AAACATGTTTTTTAACACACACTTTGCATCCAGAATCATTATAAATCATGCTAAGATTCATCTTT
769345 GAGGTCGGATTGG
910 GAGGTCGGATTGG
* * *
769358 AATTTAAACATGTTTTAAGATCAAATTTGCAAAAAAAGCCAAATTTTATTTTTCGCCAAAGAACA
1 AATTTAAACATGTTTTAAGATCAAATTTGCAAAAAAAGCCAAATTTTATTTTCCACCAAAGGACA
*
769423 TGTCAGATTTTTCTGAATTCTGGCAGTCTTAGGTTCAGGACCACCACTGTATTGCAGAACCAATG
66 TGTCAGATTTTTCTGAATTCTGGCAGTCTTAGGTTCAGGACCACCACTGCATTGCAGAACCAATG
769488 GCAATGAGGGGCAGCCTGAGCTAGTGGCTGGTTGCCTCCTTGGGAAAAAGGGAAAATACCATAAT
131 GCAATGAGGGGCAGCCTGAGCT-GTGGCTGGTTGCCTCCTTGGGAAAAAGGGAAAATACCATAAT
769553 GCCCTTGGTTTATCCCCTAATCCTATTGGCCAAGCTTGATTATAAGTAGTGGCTGTTGGCTCAGC
195 GCCCTTGGTTTATCCCCTAATCCTATTGGCCAAGCTTGATTATAAGTAGTGGCTGTTGGCTCAGC
769618 AAAAAAGGA
260 AAAAAAGGA
769627 CATGTCAGAT
Statistics
Matches: 1150, Mismatches: 40, Indels: 4
0.96 0.03 0.00
Matches are distributed among these distances:
922 1 0.00
923 1148 1.00
924 1 0.00
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31
Consensus pattern (922 bp):
AATTTAAACATGTTTTAAGATCAAATTTGCAAAAAAAGCCAAATTTTATTTTCCACCAAAGGACA
TGTCAGATTTTTCTGAATTCTGGCAGTCTTAGGTTCAGGACCACCACTGCATTGCAGAACCAATG
GCAATGAGGGGCAGCCTGAGCTGTGGCTGGTTGCCTCCTTGGGAAAAAGGGAAAATACCATAATG
CCCTTGGTTTATCCCCTAATCCTATTGGCCAAGCTTGATTATAAGTAGTGGCTGTTGGCTCAGCA
AAAAAGGATCTTCTTTGAGAAAAAAAAAAGGTTTCCAGCAACAAAAAACCCTTAGGAAATCCTTT
AGCAACAAAAAAACCAAAAACACAAAAAAAACACTATTCCATTAGTTTTCAAACTCCATTCCCGT
AGCTCCAAAAGCCACCACCAAAAATGGTTTTTTTAGATTTTCATGACTTTCTGTTAAGTCGAATC
CATTTCCCATCATCCTTAGTCGAGATAGAGCGTTTGGAAGGCAAAAAGGATGAAAAAATCACATT
TTTGTCCAAATATATTGATACATTTGTACAATGTATCGATACAAGGTCCCAACGGTCAAAAATTT
TGAATTCCAATAATTTGTATCGATACAAACAGTAAATGTATCGATACATTTGTAGAATGTATCAA
TACAGTGTATCGCTACAAAGCTACTGTCAAGGAAATTTATCGATACATTTGTACAATGTATCGAT
ACATTGATCTTTGTATCGATACACCTAGGAAGTTTACCCAGATGTATCGATACATTTCACAATAT
ATCGACACATTCAGGCATTTTTGACCACTTCGAGCCTTTTTTCTGCTCTTCCATTGTTCATTCAA
AACATGTTTTTTAACACACACTTTGCATCCAGAATCATTATAAATCATGCTAAGATTCATCTTTG
AGGTCGGATTGG
Found at i:769877 original size:289 final size:289
Alignment explanation
Indices: 769358--769915 Score: 1062
Period size: 289 Copynumber: 1.9 Consensus size: 289
769348 GTCGGATTGG
* *
769358 AATTTAAACATGTTTTAAGATCAAATTTGCAAAAAAAGCCAAATTTTATTTTTCGCCAAAGAACA
1 AATTTAAACATGTTTTAAGATCAAATTTGCAAAAAAAGCCAAATTTTATTTTCCACCAAAGAACA
*
769423 TGTCAGATTTTTCTGAATTCTGGCAGTCTTAGGTTCAGGACCACCACTGTATTGCAGAACCAATG
66 TGTCAGATTTTTCTGAATTCTGGCAGTCTTAGGTTCAGGACCACCACTGCATTGCAGAACCAATG
769488 GCAATGAGGGGCAGCCTGAGCTAGTGGCTGGTTGCCTCCTTGGGAAAAAGGGAAAATACCATAAT
131 GCAATGAGGGGCAGCCTGAGCTAGTGGCTGGTTGCCTCCTTGGGAAAAAGGGAAAATACCATAAT
769553 GCCCTTGGTTTATCCCCTAATCCTATTGGCCAAGCTTGATTATAAGTAGTGGCTGTTGGCTCAGC
196 GCCCTTGGTTTATCCCCTAATCCTATTGGCCAAGCTTGATTATAAGTAGTGGCTGTTGGCTCAGC
769618 AAAAAAGGACATGTCAGATTTTTCTGACA
261 AAAAAAGGACATGTCAGATTTTTCTGACA
*
769647 AATTTAAACATGTTTTAAGATCAAATTTGCAAAAAAAGCCAAATTTTATTTTCCACCAAAGGACA
1 AATTTAAACATGTTTTAAGATCAAATTTGCAAAAAAAGCCAAATTTTATTTTCCACCAAAGAACA
*
769712 TGTCAGATTTTTCTGAATTCTGGCAGTCTTAGGTTCAGGATCACCACTGCATTGCAGAACCAATG
66 TGTCAGATTTTTCTGAATTCTGGCAGTCTTAGGTTCAGGACCACCACTGCATTGCAGAACCAATG
*
769777 GCAATGAGGGGCAGCCTGAGCTGGTGGCTGGTTGCCTCCTTGGGAAAAAGGGAAAATACCATAAT
131 GCAATGAGGGGCAGCCTGAGCTAGTGGCTGGTTGCCTCCTTGGGAAAAAGGGAAAATACCATAAT
769842 GCCCTTGGTTTATCCCCTAATCCTATTGGCCAAGCTTGATTATAAGTAGTGGCTGTTGGCTCAGC
196 GCCCTTGGTTTATCCCCTAATCCTATTGGCCAAGCTTGATTATAAGTAGTGGCTGTTGGCTCAGC
769907 AAAAAAGGA
261 AAAAAAGGA
769916 TCTTCTTTGA
Statistics
Matches: 263, Mismatches: 6, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
289 263 1.00
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29
Consensus pattern (289 bp):
AATTTAAACATGTTTTAAGATCAAATTTGCAAAAAAAGCCAAATTTTATTTTCCACCAAAGAACA
TGTCAGATTTTTCTGAATTCTGGCAGTCTTAGGTTCAGGACCACCACTGCATTGCAGAACCAATG
GCAATGAGGGGCAGCCTGAGCTAGTGGCTGGTTGCCTCCTTGGGAAAAAGGGAAAATACCATAAT
GCCCTTGGTTTATCCCCTAATCCTATTGGCCAAGCTTGATTATAAGTAGTGGCTGTTGGCTCAGC
AAAAAAGGACATGTCAGATTTTTCTGACA
Found at i:771091 original size:289 final size:289
Alignment explanation
Indices: 770572--771127 Score: 1076
Period size: 289 Copynumber: 1.9 Consensus size: 289
770562 CGGATTGGAA
* *
770572 TTTAAACATGTTTTAAGATCAAATTTGCAAAAAAAGCCAAATTTTATTTTTCGCCAAAGGACATG
1 TTTAAACATGTTTTAAGATCAAATTTGCAAAAAAAGCCAAATTTTATTTTCCACCAAAGGACATG
*
770637 TCAGATTTTTCTGAATTCTGGCAGTCTTAGGTTCAGGACCACCACTGTATTGCAGAACCAATGGC
66 TCAGATTTTTCTGAATTCTGGCAGTCTTAGGTTCAGGACCACCACTGCATTGCAGAACCAATGGC
*
770702 AATGAGGGGCAGCCTGAGCTGGTGGCTGGTTGCCTCCTTGGGAAAAAGGGAAAATACCATAATGC
131 AATGAGGGGCAGCCTGAGCTGGTGGCTGATTGCCTCCTTGGGAAAAAGGGAAAATACCATAATGC
770767 CCTTGGTTTATCCCCTAATCCTATTGGCCAAGCTTGATTATAAGTAGTGGCTGTTGGCTCAGCAA
196 CCTTGGTTTATCCCCTAATCCTATTGGCCAAGCTTGATTATAAGTAGTGGCTGTTGGCTCAGCAA
770832 AAAAGGACATGTCAGATTTTTCTGACAAT
261 AAAAGGACATGTCAGATTTTTCTGACAAT
770861 TTTAAACATGTTTTAAGATCAAATTTGCAAAAAAAGCCAAATTTTATTTTCCACCAAAGGACATG
1 TTTAAACATGTTTTAAGATCAAATTTGCAAAAAAAGCCAAATTTTATTTTCCACCAAAGGACATG
770926 TCAGATTTTTCTGAATTCTGGCAGTCTTAGGTTCAGGACCACCACTGCATTGCAGAACCAATGGC
66 TCAGATTTTTCTGAATTCTGGCAGTCTTAGGTTCAGGACCACCACTGCATTGCAGAACCAATGGC
770991 AATGAGGGGCAGCCTGAGCTGGTGGCTGATTGCCTCCTTGGGAAAAAGGGAAAATACCATAATGC
131 AATGAGGGGCAGCCTGAGCTGGTGGCTGATTGCCTCCTTGGGAAAAAGGGAAAATACCATAATGC
771056 CCTTGGTTTATCCCCTAATCCTATTGGCCAAGCTTGATTATAAGTAGTGGCTGTTGGCTCAGCAA
196 CCTTGGTTTATCCCCTAATCCTATTGGCCAAGCTTGATTATAAGTAGTGGCTGTTGGCTCAGCAA
771121 AAAAGGA
261 AAAAGGA
771128 TCTTCTTTGA
Statistics
Matches: 263, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
289 263 1.00
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29
Consensus pattern (289 bp):
TTTAAACATGTTTTAAGATCAAATTTGCAAAAAAAGCCAAATTTTATTTTCCACCAAAGGACATG
TCAGATTTTTCTGAATTCTGGCAGTCTTAGGTTCAGGACCACCACTGCATTGCAGAACCAATGGC
AATGAGGGGCAGCCTGAGCTGGTGGCTGATTGCCTCCTTGGGAAAAAGGGAAAATACCATAATGC
CCTTGGTTTATCCCCTAATCCTATTGGCCAAGCTTGATTATAAGTAGTGGCTGTTGGCTCAGCAA
AAAAGGACATGTCAGATTTTTCTGACAAT
Found at i:772415 original size:13 final size:13
Alignment explanation
Indices: 772397--772422 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
772387 GCCAAGGAAA
772397 TGTATCGATACAT
1 TGTATCGATACAT
772410 TGTATCGATACAT
1 TGTATCGATACAT
772423 GGATCTTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:773349 original size:13 final size:13
Alignment explanation
Indices: 773331--773356 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
773321 ATTTGAACAA
773331 TGTATCGATACAT
1 TGTATCGATACAT
773344 TGTATCGATACAT
1 TGTATCGATACAT
773357 GGATCTTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:774032 original size:34 final size:35
Alignment explanation
Indices: 773994--774060 Score: 93
Period size: 36 Copynumber: 1.9 Consensus size: 35
773984 CCTTACAACA
773994 CTATC-TTTC-AAGGATAAGATAGAAACCTCTCTCT
1 CTATCTTTTCAAAGGATAAGATAG-AACCTCTCTCT
*
774028 CTATCTTTTTCAAAGGCTAAGATAGAACCTCTC
1 CTATC-TTTTCAAAGGATAAGATAGAACCTCTC
774061 AATCACTTAG
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
34 5 0.17
36 12 0.41
37 12 0.41
ACGTcount: A:0.31, C:0.24, G:0.12, T:0.33
Consensus pattern (35 bp):
CTATCTTTTCAAAGGATAAGATAGAACCTCTCTCT
Found at i:774536 original size:13 final size:13
Alignment explanation
Indices: 774518--774542 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
774508 ATTTTTCTGA
774518 TGTATCGATACAT
1 TGTATCGATACAT
774531 TGTATCGATACA
1 TGTATCGATACA
774543 ACTTGGTGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:776968 original size:23 final size:24
Alignment explanation
Indices: 776923--776969 Score: 62
Period size: 23 Copynumber: 2.0 Consensus size: 24
776913 CAAAGAATTG
*
776923 AACACAAATTCAATTAAGCACAAA
1 AACACAAATTCAATTAAGAACAAA
776947 AACAC-AATTCAATTGAA-AACAAA
1 AACACAAATTCAATT-AAGAACAAA
776970 TTTTCAACAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
23 14 0.67
24 7 0.33
ACGTcount: A:0.60, C:0.19, G:0.04, T:0.17
Consensus pattern (24 bp):
AACACAAATTCAATTAAGAACAAA
Found at i:778443 original size:21 final size:21
Alignment explanation
Indices: 778419--778460 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
778409 ATCCATTTCT
* *
778419 TCATTTTCATCAACCTCTTGA
1 TCATCTTCATCAACATCTTGA
*
778440 TCATCTTCATCATCATCTTGA
1 TCATCTTCATCAACATCTTGA
778461 ACGGTTGATT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.24, C:0.29, G:0.05, T:0.43
Consensus pattern (21 bp):
TCATCTTCATCAACATCTTGA
Found at i:780101 original size:13 final size:13
Alignment explanation
Indices: 780083--780108 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
780073 ATTTTTCTGA
780083 TGTATCGATACAT
1 TGTATCGATACAT
780096 TGTATCGATACAT
1 TGTATCGATACAT
780109 ACTTGGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:781016 original size:21 final size:21
Alignment explanation
Indices: 780990--781034 Score: 74
Period size: 21 Copynumber: 2.1 Consensus size: 21
780980 CTGCTAAGGA
780990 AATGTATCGATACATTTGTA-C
1 AATGTATCGATACA-TTGTATC
781011 AATGTATCGATACATTGTATC
1 AATGTATCGATACATTGTATC
781032 AAT
1 AAT
781035 TCATGGATCT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
20 5 0.22
21 18 0.78
ACGTcount: A:0.36, C:0.13, G:0.13, T:0.38
Consensus pattern (21 bp):
AATGTATCGATACATTGTATC
Found at i:782747 original size:906 final size:906
Alignment explanation
Indices: 780483--784882 Score: 7388
Period size: 906 Copynumber: 4.8 Consensus size: 906
780473 AGATCCTAAC
*
780483 AAGGGAAAATACCATAATGCCCTTGGTTTGTCCCCTAATCCTATTGGCCAAGCTTGATTATAAGT
1 AAGGGAAAATACCATAATGCCCTTGGTTTGTCCCCTTATCCTATTGGCCAAGCTTGATTATAAGT
780548 AGTGGCTGTTGGCTCAGCAAAAAAGGATCTTCTTTGAGAAAAAAAATAGGTTTCCAGCAACAAAA
66 AGTGGCTGTTGGCTCAGCAAAAAAGGATCTTCTTTGAGAAAAAAAATAGGTTTCCAGCAACAAAA
* * **
780613 AACCCTTAGGAAATCCTTTAGCAGCAAGAAAACCAAAAACACAAAAAAAATTCTATTCCATTAGT
131 AACCCTTAGGAAATCCTTTAGCAACAAAAAAACCAAAAACACAAAAAAAACACTATTCCATTAGT
* * *
780678 TTTCAATCTCCATTCCCGTAGCTCCAAAAGCCACCACCAAAAATGGTTTTTTTAGATTTTCATGA
196 TTTCAAACTCCATTCCCGTAGCTCCAAAAGCCACTACCAAAAATGATTTTTTTAGATTTTCATGA
* *
780743 CTTTTTGTTAAGTTGAATCCATTTCCCATCATCCTTAGTCGAGATAGAGTGTTTGGAAGGCAAAA
261 CTTTTTGTTAAGTCGAATCCATTTCCCATCGTCCTTAGTCGAGATAGAGTGTTTGGAAGGCAAAA
* *
780808 AGGATGAAAAAATCACATTTTTGTCCAAATGTATCGATACATTTGTAGAATGTATCGATACAAGG
326 AGGGTGAAAAAATCACATTTTTGTCCAAATGTATCGATACATTTGTAGAATTTATCGATACAAGG
** * *
780873 TCATAACAGTCAAAAATTTTGAATTCCAATAATTTGCATCGATATAAACAGTAAATGTATCGATA
391 TCCCAACAGTCAAAAATTTTGAATTCCAATAATTTGTATCGATACAAACAGTAAATGTATCGATA
* * *
780938 CATTTGTAGAATGTATCGATACAGTGTATCGCTACAAAGTTACTGCTAAGGAAATGTATCGATAC
456 CATTTGCAGAATGTATCGATACAGTGTATCGCTACAAAGCTACTGCCAAGGAAATGTATCGATAC
781003 ATTTGTACAATGTATCGATACATTGTATCAATTCATGGATCTTTGTATCGATACATCTAGGAAGT
521 A----T----TG--T--AT-C---G-AT--A--CATGGATCTTTGTATCGATACATCTAGGAAGT
*
781068 TTACCCAGATGTATCGATACATTTTACAATGTA-TGATACATTCAGGCATTTTTTACCACTTCGA
565 TTACCCAGATGTATCGATACATTTTACAATGTATTGATACATTCAGGCATTTTTGACCACTTCGA
*
781132 GCCTTTTTTTTGCTCTTCCATTGTTCATGTTTTTTAACACACATTTTGCATCCAGAATCATTATA
630 ACCTTTTTTTTGCTCTTCCATTGTTCATGTTTTTTAACACACATTTTGCATCCAGAATCATTATA
781197 AATCATGCTAAGATTCATCTTTGAGGTCGGATTGGAATTTAAACATGTTTTATGATCAAATTTGT
695 AATCATGCTAAGATTCATCTTTGAGGTCGGATTGGAATTTAAACATGTTTTATGATCAAATTTGT
*
781262 AAAAAAAGCCAAATGTCATTTTCCACCAAAGGACATGTCAGATTTTTCTGAATTCTGGCAGTCT-
760 AGAAAAAGCCAAATGTCATTTTCCACCAAAGGACATGTCAGATTTTTCTGAATTCTGGCAGTCTC
* *
781326 AAGTTCAGGACCACTACTGAATTGCAGAACAAATGGCTATGAGGGGCAGCTTGAGCTGGTGGCTG
825 AAGTTCAGGACCACTACTGAATTGCAGAACAAATGGCAATGAGGGGCAGCCTGAGCTGGTGGCTG
781391 GTTGCCTCCTTGGGAAA
890 GTTGCCTCCTTGGGAAA
*
781408 AAGGGAAAATACCATTATGCCCTTGGTTTGTCCCCTTATCCTATTGGCCAAGCTTGATTATAAGT
1 AAGGGAAAATACCATAATGCCCTTGGTTTGTCCCCTTATCCTATTGGCCAAGCTTGATTATAAGT
* *
781473 AGTGGCTGTTGGCTCAGCAAAAAAGGATCTTTTTTGAGAAAAAAAATAGGTTTCCAACAACAAAA
66 AGTGGCTGTTGGCTCAGCAAAAAAGGATCTTCTTTGAGAAAAAAAATAGGTTTCCAGCAACAAAA
*
781538 AACCCTTAGGAAATCTTTTAGCAACAAAAAAACCAAAAACACAAAAAAAACACTATTCCATTAGT
131 AACCCTTAGGAAATCCTTTAGCAACAAAAAAACCAAAAACACAAAAAAAACACTATTCCATTAGT
* *
781603 TTTCAAACTCTATTCTCGTAGCTCCAAAAGCCACTACCAAAAATGATTTTTTTAGATTTTCATGA
196 TTTCAAACTCCATTCCCGTAGCTCCAAAAGCCACTACCAAAAATGATTTTTTTAGATTTTCATGA
781668 CTTTTTGTTAAGTCGAATCCATTTCCCATCGTCCTTAGTCGAGATAGAGTGTTTGGAAGGCAAAA
261 CTTTTTGTTAAGTCGAATCCATTTCCCATCGTCCTTAGTCGAGATAGAGTGTTTGGAAGGCAAAA
781733 AGGGTGAAAAAATCACATTTTTGTCCAAATGTATCGATACATTTGTAGAATTTATCGATACAAGG
326 AGGGTGAAAAAATCACATTTTTGTCCAAATGTATCGATACATTTGTAGAATTTATCGATACAAGG
**
781798 TCCCAATGGTCAAAAATTTTGAATTCCAATAATTTGTATCGATACAAACAGTAAATGTATCGATA
391 TCCCAACAGTCAAAAATTTTGAATTCCAATAATTTGTATCGATACAAACAGTAAATGTATCGATA
*
781863 CATTTGCAGAATGTATCGATACAGTGTATCGCTACAAAGCTACTGCCAAGGAAATATATCGATAC
456 CATTTGCAGAATGTATCGATACAGTGTATCGCTACAAAGCTACTGCCAAGGAAATGTATCGATAC
781928 ATTGTATCGATACATGGATCTTTGTATCGATACATCTAGGAAGTTTACCCAGATGTATCGATACA
521 ATTGTATCGATACATGGATCTTTGTATCGATACATCTAGGAAGTTTACCCAGATGTATCGATACA
*
781993 TTTTACAATGTATTGATACATTCAAGCATTTTTGACCACTTC-AACCTTTTTTTTGCTCTTCCAT
586 TTTTACAATGTATTGATACATTCAGGCATTTTTGACCACTTCGAACCTTTTTTTTGCTCTTCCAT
*
782057 TGTTCATGTTTTTTAACCCACATTTTGCATCCAGAATCATTATAAATCATGCTAAGATTCATCTT
651 TGTTCATGTTTTTTAACACACATTTTGCATCCAGAATCATTATAAATCATGCTAAGATTCATCTT
*
782122 TGAGGTCGGATTGGAATTTAAACATGTTTTATGATCAAATTTATAGAAAAAGCCAAATGTCATTT
716 TGAGGTCGGATTGGAATTTAAACATGTTTTATGATCAAATTTGTAGAAAAAGCCAAATGTCATTT
782187 TCCACCAAAGGACATGTCAGATTTTTCTGAATTCTGGCAGTCTCAAGTTCAGGACCACTACTGAA
781 TCCACCAAAGGACATGTCAGATTTTTCTGAATTCTGGCAGTCTCAAGTTCAGGACCACTACTGAA
782252 TTGCAGAACAAATGGCAATGAGGGGCAGCCTGAGCTGGTGGCTGGTTGCCTCCTTGGGAAA
846 TTGCAGAACAAATGGCAATGAGGGGCAGCCTGAGCTGGTGGCTGGTTGCCTCCTTGGGAAA
*
782313 AAGGGAAAATACCATAATGCCCTTGGTTTGTCCCCTTATCCTATTGGTCAAGCTTGATTATAAGT
1 AAGGGAAAATACCATAATGCCCTTGGTTTGTCCCCTTATCCTATTGGCCAAGCTTGATTATAAGT
* *
782378 AGTGGCTATTGGCTCAGCAAAAAAGGATCTTCTTTGAGAAAAAAAAATAGGTTTCTAGCAACAAA
66 AGTGGCTGTTGGCTCAGCAAAAAAGGATCTTCTTTGAG-AAAAAAAATAGGTTTCCAGCAACAAA
782443 AAACCCTTAGGAAATCCTTTAGCAACAAAAAAACCAAAAACACAAAAAAAACACTATTCCATTAG
130 AAACCCTTAGGAAATCCTTTAGCAACAAAAAAACCAAAAACACAAAAAAAACACTATTCCATTAG
* *
782508 TTTTCAAACTCCATTCCCGTAGCTCCAAAAGCCACCACCAAAAATGGTTTTTTTAGATTTTCATG
195 TTTTCAAACTCCATTCCCGTAGCTCCAAAAGCCACTACCAAAAATGATTTTTTTAGATTTTCATG
*
782573 GCTTTTTGTTAAGTCGAATCCATTTCCCATCGTCCTTAGTCGAGATAGAGTGTTTGGAAGGCAAA
260 ACTTTTTGTTAAGTCGAATCCATTTCCCATCGTCCTTAGTCGAGATAGAGTGTTTGGAAGGCAAA
* *
782638 AAGGATGAAAAAATCACATTTTTGTCCAAATGTATCGATACATTTGTAGAATGTATCGATACAAG
325 AAGGGTGAAAAAATCACATTTTTGTCCAAATGTATCGATACATTTGTAGAATTTATCGATACAAG
* * *
782703 GTCACAACAGTCAAAAATTTTGAATTCCAATAATTTGCATCGATATAAACAGTAAATGTATCGAT
390 GTCCCAACAGTCAAAAATTTTGAATTCCAATAATTTGTATCGATACAAACAGTAAATGTATCGAT
* *
782768 ACATTTGTAGAATGTATCGATACAGTGTATCGCTACAAAGCTACTGCTAAGGAAATGTATCGATA
455 ACATTTGCAGAATGTATCGATACAGTGTATCGCTACAAAGCTACTGCCAAGGAAATGTATCGATA
782833 CATTTGTACAATGTATCGATACATTGTATCGATTCATGGATCTTTGTATCGATACATCTAGGAAG
520 CA----T----TG--T--AT-C---G-AT--A--CATGGATCTTTGTATCGATACATCTAGGAAG
782898 TTTACCCAGATGTATCGATACATTTTACAATGTATTGATACATTCAGGCATTTTTGACCACTTCG
564 TTTACCCAGATGTATCGATACATTTTACAATGTATTGATACATTCAGGCATTTTTGACCACTTCG
*
782963 AGCCTTTTTTTTTGCTCTTCCATTGTTCATGTTTTTTAACACACATTTTGCATCCAGAATCATTA
629 AACC-TTTTTTTTGCTCTTCCATTGTTCATGTTTTTTAACACACATTTTGCATCCAGAATCATTA
783028 TAAATCATGCTAAGATTCATCTTTGAGGTCGGATTGGAATTTAAACATGTTTTATGATCAAATTT
693 TAAATCATGCTAAGATTCATCTTTGAGGTCGGATTGGAATTTAAACATGTTTTATGATCAAATTT
783093 GTAGAAAAAGCCAAATGTCATTTTCCACCAAAGGACATGTCAGATTTTTCTGAATTCTGGCAGTC
758 GTAGAAAAAGCCAAATGTCATTTTCCACCAAAGGACATGTCAGATTTTTCTGAATTCTGGCAGTC
*
783158 TCAAGTTCAGGACCACTACTGAATTGCAGAACAAATGGCTATGAGGGGCAGCCTGAGCTGGTGGC
823 TCAAGTTCAGGACCACTACTGAATTGCAGAACAAATGGCAATGAGGGGCAGCCTGAGCTGGTGGC
783223 TGGTTGCCTCCTTGGGAAA
888 TGGTTGCCTCCTTGGGAAA
783242 AAGGGAAAATACCATAATGCCCTTGGTTTGTCCCCTTATCCTATTGGCCAAGCTTGATTATAAGT
1 AAGGGAAAATACCATAATGCCCTTGGTTTGTCCCCTTATCCTATTGGCCAAGCTTGATTATAAGT
*
783307 AGTGGCTGTTGGCTCAGCAAAAAAGGATCTTCTTTGAGAAAAAAAACAGGTTTCCAGCAACAAAA
66 AGTGGCTGTTGGCTCAGCAAAAAAGGATCTTCTTTGAGAAAAAAAATAGGTTTCCAGCAACAAAA
*
783372 AACCCTTAGGAAATCTTTTAGCAACAAAAAAACCAAAAACACAAAAAAAACACTATTCCATTAGT
131 AACCCTTAGGAAATCCTTTAGCAACAAAAAAACCAAAAACACAAAAAAAACACTATTCCATTAGT
*
783437 TTTCAAACTCCATTCTCGTAGCTCCAAAAGCCACTACCAAAAATGATTTTTTTAGATTTTCATGA
196 TTTCAAACTCCATTCCCGTAGCTCCAAAAGCCACTACCAAAAATGATTTTTTTAGATTTTCATGA
783502 CTTTTTGTTAAGTCGAATCCATTTCCCATCGTCCTTAGTCGAGATAGAGTGTTTGGAAGGCAAAA
261 CTTTTTGTTAAGTCGAATCCATTTCCCATCGTCCTTAGTCGAGATAGAGTGTTTGGAAGGCAAAA
783567 AGGGTGAAAAAATCACATTTTTGTCCAAATGTATCGATACATTTGTAGAATTTATCGATACAAGG
326 AGGGTGAAAAAATCACATTTTTGTCCAAATGTATCGATACATTTGTAGAATTTATCGATACAAGG
783632 TCCCAAC-GATCAAAAATTTTGAATTCCAATAATTTGTATCGATACAAACAGTAAATGTATCGAT
391 TCCCAACAG-TCAAAAATTTTGAATTCCAATAATTTGTATCGATACAAACAGTAAATGTATCGAT
*
783696 ACATTTGCAGAATGTATCGACACAGTGTATCGCTACAAAGCTACTGCCAAGGAAATGTATCGATA
455 ACATTTGCAGAATGTATCGATACAGTGTATCGCTACAAAGCTACTGCCAAGGAAATGTATCGATA
783761 CATTGTATCGATACATGGATCTTTGTATCGATACATCTAGGAAGTTTACCCAGATGTATCGATAC
520 CATTGTATCGATACATGGATCTTTGTATCGATACATCTAGGAAGTTTACCCAGATGTATCGATAC
*
783826 ATTTTACAATGTATTGATACATTCAAGCATTTTTGACCACTTC-AAGCCTTTTTTTTGCTCTTCC
585 ATTTTACAATGTATTGATACATTCAGGCATTTTTGACCACTTCGAA-CCTTTTTTTTGCTCTTCC
* *
783890 ATTTTTCATGTTTTTTAACCCACATTTTGCATCCAGAATCATTATAAATCATGCTAAGATTCATC
649 ATTGTTCATGTTTTTTAACACACATTTTGCATCCAGAATCATTATAAATCATGCTAAGATTCATC
*
783955 TTTGAGGTCGGATTGGAATTTAAACATGTTTTATGATCAAATTTGTAGAGAAAGCCAAATGTCAT
714 TTTGAGGTCGGATTGGAATTTAAACATGTTTTATGATCAAATTTGTAGAAAAAGCCAAATGTCAT
784020 TTTCCACCAAAGGACATGTCAGATTTTTCTGAATTCTGGCAGTCTCAAGTTCAGGACCACTACTG
779 TTTCCACCAAAGGACATGTCAGATTTTTCTGAATTCTGGCAGTCTCAAGTTCAGGACCACTACTG
784085 AATTGCAGAACAAATGGCAATGAGGGGCAGCCTGAGCTGGTGGCTGGTTGCCTCCTTGGGAAA
844 AATTGCAGAACAAATGGCAATGAGGGGCAGCCTGAGCTGGTGGCTGGTTGCCTCCTTGGGAAA
*
784148 AAGGAAAAATACCATAATGCCCTTGGTTTGTCCCCTTATCCTATTGGCCAAGCTTGATTATAAGT
1 AAGGGAAAATACCATAATGCCCTTGGTTTGTCCCCTTATCCTATTGGCCAAGCTTGATTATAAGT
*
784213 AGTGGCTGTTGGCTCAGCAAAAAAGGATCTTCTTTGAGAAAAAAAAACAGGTTTCCAGCAACAAA
66 AGTGGCTGTTGGCTCAGCAAAAAAGGATCTTCTTTGAG-AAAAAAAATAGGTTTCCAGCAACAAA
* * *
784278 AAACCCTTAGGAAATCATTTAGCGACAAAAAAACCAAACACACAAAAAAAACACTATTCCATTAG
130 AAACCCTTAGGAAATCCTTTAGCAACAAAAAAACCAAAAACACAAAAAAAACACTATTCCATTAG
784343 TTTTCAAACTCCTATTCCCGTAGCTCCAAAAGCCACTACCAAAAATGATTTTTTTAGATTTTCAT
195 TTTTCAAACTCC-ATTCCCGTAGCTCCAAAAGCCACTACCAAAAATGATTTTTTTAGATTTTCAT
784408 GACTTTTTGTTAAGTCGAATCCATTTCCCATCGTCCTTAGTCGAGATAGAGTGTTTGGAAGGCAA
259 GACTTTTTGTTAAGTCGAATCCATTTCCCATCGTCCTTAGTCGAGATAGAGTGTTTGGAAGGCAA
784473 AAAGGGTGAAAAAATCACATTTTTGTCCAAATGTATCGATACATTTGTAGAATTTATCGATACAA
324 AAAGGGTGAAAAAATCACATTTTTGTCCAAATGTATCGATACATTTGTAGAATTTATCGATACAA
*
784538 GGTCCCAACGGTCAAAAATTTTGAATTCCAATAATTTGTATCGATACAAACAGTAAATGTATCGA
389 GGTCCCAACAGTCAAAAATTTTGAATTCCAATAATTTGTATCGATACAAACAGTAAATGTATCGA
* *
784603 TACATTTACAGAATGTATCGATACAGTGTATCACTACAAAGCTACTGCCAAGGAAATGTATCGAT
454 TACATTTGCAGAATGTATCGATACAGTGTATCGCTACAAAGCTACTGCCAAGGAAATGTATCGAT
784668 ACATTGGGACAATGTATCGATACATTTTATCTATACATGGATCTTTGTATCGATACATCTAGGAA
519 ACA-T-------TGTATCG-------------ATACATGGATCTTTGTATCGATACATCTAGGAA
* * * *
784733 GTTTACCTAGATGTATCGATACATTTTAAAATGTATCGATACATTTAGGCATTTTTGACCACTTC
563 GTTTACCCAGATGTATCGATACATTTTACAATGTATTGATACATTCAGGCATTTTTGACCACTTC
* * * *
784798 GACCCTTTTTTCTGCTCTTCCATTGTTCATTCAAAACATATTTTTTAACACACACTTTGCATCCA
628 GAACCTTTTTTTTGCTCTTCCATTG----TT-----CATGTTTTTTAACACACATTTTGCATCCA
784863 GAATCATTATAAATCATGCT
684 GAATCATTATAAATCATGCT
784883 CATATCATGG
Statistics
Matches: 3308, Mismatches: 105, Indels: 111
0.94 0.03 0.03
Matches are distributed among these distances:
904 256 0.08
905 206 0.06
906 774 0.23
907 196 0.06
908 311 0.09
909 4 0.00
910 1 0.00
911 2 0.00
912 2 0.00
913 2 0.00
914 2 0.00
915 2 0.00
916 10 0.00
917 2 0.00
918 3 0.00
919 1 0.00
920 2 0.00
921 1 0.00
922 1 0.00
923 2 0.00
924 1 0.00
925 494 0.15
927 95 0.03
928 404 0.12
929 485 0.15
930 1 0.00
933 2 0.00
938 46 0.01
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.32
Consensus pattern (906 bp):
AAGGGAAAATACCATAATGCCCTTGGTTTGTCCCCTTATCCTATTGGCCAAGCTTGATTATAAGT
AGTGGCTGTTGGCTCAGCAAAAAAGGATCTTCTTTGAGAAAAAAAATAGGTTTCCAGCAACAAAA
AACCCTTAGGAAATCCTTTAGCAACAAAAAAACCAAAAACACAAAAAAAACACTATTCCATTAGT
TTTCAAACTCCATTCCCGTAGCTCCAAAAGCCACTACCAAAAATGATTTTTTTAGATTTTCATGA
CTTTTTGTTAAGTCGAATCCATTTCCCATCGTCCTTAGTCGAGATAGAGTGTTTGGAAGGCAAAA
AGGGTGAAAAAATCACATTTTTGTCCAAATGTATCGATACATTTGTAGAATTTATCGATACAAGG
TCCCAACAGTCAAAAATTTTGAATTCCAATAATTTGTATCGATACAAACAGTAAATGTATCGATA
CATTTGCAGAATGTATCGATACAGTGTATCGCTACAAAGCTACTGCCAAGGAAATGTATCGATAC
ATTGTATCGATACATGGATCTTTGTATCGATACATCTAGGAAGTTTACCCAGATGTATCGATACA
TTTTACAATGTATTGATACATTCAGGCATTTTTGACCACTTCGAACCTTTTTTTTGCTCTTCCAT
TGTTCATGTTTTTTAACACACATTTTGCATCCAGAATCATTATAAATCATGCTAAGATTCATCTT
TGAGGTCGGATTGGAATTTAAACATGTTTTATGATCAAATTTGTAGAAAAAGCCAAATGTCATTT
TCCACCAAAGGACATGTCAGATTTTTCTGAATTCTGGCAGTCTCAAGTTCAGGACCACTACTGAA
TTGCAGAACAAATGGCAATGAGGGGCAGCCTGAGCTGGTGGCTGGTTGCCTCCTTGGGAAA
Found at i:783769 original size:13 final size:13
Alignment explanation
Indices: 783751--783776 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
783741 GCCAAGGAAA
783751 TGTATCGATACAT
1 TGTATCGATACAT
783764 TGTATCGATACAT
1 TGTATCGATACAT
783777 GGATCTTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:784600 original size:21 final size:20
Alignment explanation
Indices: 784574--784627 Score: 65
Period size: 21 Copynumber: 2.6 Consensus size: 20
784564 TCCAATAATT
784574 TGTATCGATACA-AACAGTAAA
1 TGTATCGATACATAACAG--AA
*
784595 TGTATCGATACATTTACAGAA
1 TGTATCGATACA-TAACAGAA
784616 TGTATCGATACA
1 TGTATCGATACA
784628 GTGTATCACT
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
21 26 0.87
23 4 0.13
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (20 bp):
TGTATCGATACATAACAGAA
Found at i:784902 original size:19 final size:20
Alignment explanation
Indices: 784873--784911 Score: 71
Period size: 19 Copynumber: 2.0 Consensus size: 20
784863 GAATCATTAT
784873 AAATCATGCTCATATCATGG
1 AAATCATGCTCATATCATGG
784893 AAAT-ATGCTCATATCATGG
1 AAATCATGCTCATATCATGG
784912 TTTTCCAAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 15 0.79
20 4 0.21
ACGTcount: A:0.36, C:0.18, G:0.15, T:0.31
Consensus pattern (20 bp):
AAATCATGCTCATATCATGG
Found at i:785686 original size:13 final size:13
Alignment explanation
Indices: 785665--785702 Score: 58
Period size: 13 Copynumber: 2.9 Consensus size: 13
785655 CAGCATTCTC
* *
785665 TGTACCGATACAT
1 TGTATCGATACAG
785678 TGTATCGATACAG
1 TGTATCGATACAG
785691 TGTATCGATACA
1 TGTATCGATACA
785703 AGGGGTTTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAG
Found at i:785869 original size:20 final size:20
Alignment explanation
Indices: 785834--785874 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 20
785824 CAAATTTCTT
785834 GTTTTTCACTTCAAAATACATC
1 GTTTTTCAC-TCAAAAT-CATC
785856 GTTTTTCA-TCAAAATCATC
1 GTTTTTCACTCAAAATCATC
785875 AACAAAAACA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 4 0.21
20 7 0.37
22 8 0.42
ACGTcount: A:0.32, C:0.22, G:0.05, T:0.41
Consensus pattern (20 bp):
GTTTTTCACTCAAAATCATC
Found at i:789632 original size:80 final size:79
Alignment explanation
Indices: 789528--789876 Score: 348
Period size: 80 Copynumber: 4.4 Consensus size: 79
789518 AAATTTAATA
* * * * * *
789528 TTTTGAAGATAAAAA-CAGGGTTGGAGTATTCTCTTAGAAATAATAAGGTTTGAGTATCCCCGAT
1 TTTTGAA-ATAAAAACCGGGGTTGGAGTATCCCCTTAGAAATAACAGGGTTGGAGTATCCCCGAT
789592 GGTGGAAAATCGATG
65 GGTGGAAAATCGATG
* *
789607 TTTTGGAAATAAAAACCGGGGTTGGAGTATCCCCTTAGTAATAAC-GGAGTTGGAGTATCCCTGA
1 TTTT-GAAATAAAAACCGGGGTTGGAGTATCCCCTTAGAAATAACAGG-GTTGGAGTATCCCCGA
** * *
789671 TTATAGAAAATCAATG
64 TGGTGGAAAATCGATG
* * * * * ***
789687 TTTTCAAA-AAAAAGCCGGGGTTGGAGTAT-CCCTTTGTAAATAACGGGGTTAGAATATCTTTGA
1 TTTTGAAATAAAAA-CCGGGGTTGGAGTATCCCCTTAG-AAATAACAGGGTTGGAGTATCCCCGA
*
789750 TGGTGAAAAATCGATG
64 TGGTGGAAAATCGATG
* *
789766 TTTTAGAAATAAAAACCGAGGTTGGAGTATCCCCTTAGAAATAACAGGGTTGGAGTATCCTCGAT
1 TTTT-GAAATAAAAACCGGGGTTGGAGTATCCCCTTAGAAATAACAGGGTTGGAGTATCCCCGAT
789831 GGTGGAAAATCGATG
65 GGTGGAAAATCGATG
* * ***
789846 CTTT-AAAAATAAAATTAGGGTTGGAGTATCC
1 TTTTGAAATA-AAAACCGGGGTTGGAGTATCC
789877 GCCATTGTGA
Statistics
Matches: 221, Mismatches: 39, Indels: 20
0.79 0.14 0.07
Matches are distributed among these distances:
78 15 0.07
79 80 0.36
80 115 0.52
81 11 0.05
ACGTcount: A:0.34, C:0.12, G:0.25, T:0.29
Consensus pattern (79 bp):
TTTTGAAATAAAAACCGGGGTTGGAGTATCCCCTTAGAAATAACAGGGTTGGAGTATCCCCGATG
GTGGAAAATCGATG
Found at i:789867 original size:159 final size:159
Alignment explanation
Indices: 789589--789876 Score: 411
Period size: 159 Copynumber: 1.8 Consensus size: 159
789579 GAGTATCCCC
* * * *
789589 GATGGTGGAAAATCGATGTTTTGGAAATAAAAACCGGGGTTGGAGTATCCCCTTAGTAATAACGG
1 GATGGTGAAAAATCGATGTTTTAGAAATAAAAACCGAGGTTGGAGTATCCCCTTAGAAATAACGG
* * * *
789654 AGTTGGAGTATCCCTGATTATAGAAAATCAATGTTTTCAAAAAAAAGCCGGGGTTGGAGTATCCC
66 AGTTGGAGTATCCCTGATGATAGAAAATCAATGCTTTCAAAAAAAAACCAGGGTTGGAGTATCCC
789719 TTTGTAAATAACGGGGTTAGAATATCTTT
131 TTTGTAAATAACGGGGTTAGAATATCTTT
789748 GATGGTGAAAAATCGATGTTTTAGAAATAAAAACCGAGGTTGGAGTATCCCCTTAGAAATAACAG
1 GATGGTGAAAAATCGATGTTTTAGAAATAAAAACCGAGGTTGGAGTATCCCCTTAGAAATAAC-G
* * * **
789813 G-GTTGGAGTAT-CCTCGATGGTGGAAAATCGATGCTTT-AAAAATAAAATTAGGGTTGGAGTAT
65 GAGTTGGAGTATCCCT-GATGATAGAAAATCAATGCTTTCAAAAA-AAAACCAGGGTTGGAGTAT
789875 CC
128 CC
789877 GCCATTGTGA
Statistics
Matches: 113, Mismatches: 13, Indels: 6
0.86 0.10 0.05
Matches are distributed among these distances:
158 8 0.07
159 103 0.91
160 2 0.02
ACGTcount: A:0.34, C:0.12, G:0.25, T:0.28
Consensus pattern (159 bp):
GATGGTGAAAAATCGATGTTTTAGAAATAAAAACCGAGGTTGGAGTATCCCCTTAGAAATAACGG
AGTTGGAGTATCCCTGATGATAGAAAATCAATGCTTTCAAAAAAAAACCAGGGTTGGAGTATCCC
TTTGTAAATAACGGGGTTAGAATATCTTT
Found at i:789891 original size:51 final size:51
Alignment explanation
Indices: 789811--789927 Score: 128
Period size: 51 Copynumber: 2.3 Consensus size: 51
789801 TAGAAATAAC
* * * *
789811 AGGGTTGGAGTATCCTCGATGGTGGAAAATC-GATGCTTTAAAAATAAAATT
1 AGGGTTGGAGTATCCGCCATGGTGAAAAATCAG-TGCTTTAAAAATAAAACT
* * **
789862 AGGGTTGGAGTATCCGCCATTGTGAAAAATCAGTGTTTTGGAAATAAAACT
1 AGGGTTGGAGTATCCGCCATGGTGAAAAATCAGTGCTTTAAAAATAAAACT
* *
789913 AGAGTTGAAGTATCC
1 AGGGTTGGAGTATCC
789928 CCTCGGAAGG
Statistics
Matches: 55, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
51 54 0.98
52 1 0.02
ACGTcount: A:0.34, C:0.11, G:0.26, T:0.29
Consensus pattern (51 bp):
AGGGTTGGAGTATCCGCCATGGTGAAAAATCAGTGCTTTAAAAATAAAACT
Found at i:793329 original size:16 final size:17
Alignment explanation
Indices: 793298--793334 Score: 58
Period size: 16 Copynumber: 2.2 Consensus size: 17
793288 ATTAAATTCA
793298 TATATTCGTATTATATT
1 TATATTCGTATTATATT
*
793315 TATATTC-TTTTATATT
1 TATATTCGTATTATATT
793331 TATA
1 TATA
793335 CTTTACTTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 12 0.63
17 7 0.37
ACGTcount: A:0.30, C:0.05, G:0.03, T:0.62
Consensus pattern (17 bp):
TATATTCGTATTATATT
Found at i:794737 original size:13 final size:13
Alignment explanation
Indices: 794719--794744 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
794709 ACATTTTGGG
794719 ATGTATCGATACA
1 ATGTATCGATACA
794732 ATGTATCGATACA
1 ATGTATCGATACA
794745 TATTGGGTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:794761 original size:32 final size:33
Alignment explanation
Indices: 794697--794764 Score: 120
Period size: 33 Copynumber: 2.1 Consensus size: 33
794687 CGTTACAAGC
*
794697 CAATGTATCGATACATTTTGGGATGTATCGATA
1 CAATGTATCGATACATATTGGGATGTATCGATA
794730 CAATGTATCGATACATATTGGG-TGTATCGATA
1 CAATGTATCGATACATATTGGGATGTATCGATA
794762 CAA
1 CAA
794765 ATTTGGCTAC
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
32 13 0.38
33 21 0.62
ACGTcount: A:0.32, C:0.13, G:0.21, T:0.34
Consensus pattern (33 bp):
CAATGTATCGATACATATTGGGATGTATCGATA
Found at i:794844 original size:20 final size:21
Alignment explanation
Indices: 794797--794849 Score: 72
Period size: 20 Copynumber: 2.6 Consensus size: 21
794787 GCCAATGACC
**
794797 TGTATCGATACATTCTTTTCA
1 TGTATCGATACATTCTGGTCA
*
794818 AGTATCGATACATT-TGGTCA
1 TGTATCGATACATTCTGGTCA
794838 TGTATCGATACA
1 TGTATCGATACA
794850 ATGTATCGAT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
20 15 0.54
21 13 0.46
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.40
Consensus pattern (21 bp):
TGTATCGATACATTCTGGTCA
Found at i:794855 original size:13 final size:13
Alignment explanation
Indices: 794837--794861 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
794827 ACATTTGGTC
794837 ATGTATCGATACA
1 ATGTATCGATACA
794850 ATGTATCGATAC
1 ATGTATCGATAC
794862 TGTGCAATCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:797177 original size:20 final size:21
Alignment explanation
Indices: 797148--797188 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
797138 TGTTTTTGTT
797148 GATGATTTTG-A-TGAAAAAC
1 GATGATTTTGAAGTGAAAAAC
797167 GATGTATTTTGAAGTGAAAAAC
1 GATG-ATTTTGAAGTGAAAAAC
797189 AAGAAATTTG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 4 0.21
20 6 0.32
21 1 0.05
22 8 0.42
ACGTcount: A:0.41, C:0.05, G:0.22, T:0.32
Consensus pattern (21 bp):
GATGATTTTGAAGTGAAAAAC
Found at i:797338 original size:13 final size:13
Alignment explanation
Indices: 797320--797344 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
797310 ATAAACCCTT
797320 TGTATCGATACAC
1 TGTATCGATACAC
797333 TGTATCGATACA
1 TGTATCGATACA
797345 TCTGCGTTTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAC
Found at i:797541 original size:8 final size:8
Alignment explanation
Indices: 797528--797553 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
797518 AACATCATTC
797528 ATCACAAA
1 ATCACAAA
797536 ATCACAAA
1 ATCACAAA
797544 ATCACAAA
1 ATCACAAA
797552 AT
1 AT
797554 TTAATCAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.62, C:0.23, G:0.00, T:0.15
Consensus pattern (8 bp):
ATCACAAA
Found at i:803409 original size:13 final size:13
Alignment explanation
Indices: 803391--803416 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
803381 ACATTTTGGG
803391 ATGTATCGATACA
1 ATGTATCGATACA
803404 ATGTATCGATACA
1 ATGTATCGATACA
803417 TATTGGGTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:803433 original size:32 final size:33
Alignment explanation
Indices: 803369--803436 Score: 120
Period size: 33 Copynumber: 2.1 Consensus size: 33
803359 CGTTACAAGC
*
803369 CAATGTATCGATACATTTTGGGATGTATCGATA
1 CAATGTATCGATACATATTGGGATGTATCGATA
803402 CAATGTATCGATACATATTGGG-TGTATCGATA
1 CAATGTATCGATACATATTGGGATGTATCGATA
803434 CAA
1 CAA
803437 ATATGGCTAC
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
32 13 0.38
33 21 0.62
ACGTcount: A:0.32, C:0.13, G:0.21, T:0.34
Consensus pattern (33 bp):
CAATGTATCGATACATATTGGGATGTATCGATA
Found at i:803526 original size:13 final size:13
Alignment explanation
Indices: 803508--803532 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
803498 TACATTGGTC
803508 ATGTATCGATACA
1 ATGTATCGATACA
803521 ATGTATCGATAC
1 ATGTATCGATAC
803533 TGTGCAATCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:808516 original size:139 final size:141
Alignment explanation
Indices: 808367--808652 Score: 391
Period size: 139 Copynumber: 2.0 Consensus size: 141
808357 TTTTTCTTGG
* * **
808367 TTTTTAATTTTTAAAATTCATCAAATATTATTATTTATTTCATAGTAATTCATTTTTCAAAAATT
1 TTTTTAATTTTTAAAATTCATCAAATATTATTATCTATTTCATAGTAATTCAGTTCGCAAAAATT
* * * *
808432 CATTCATTTCCATAAATTTTTAATTTTTTCCTTG-AA-T-TTTTTT-TAAAATGCGGAGTTTTCT
66 CATTCATTTCCATAAAATTTGAAATTTTT-CTTGAAATTCTTTTTTCTAAAATACGGAGTTTTCT
* *
808493 ATTCCGTAAATT
130 ACTCAGTAAATT
* *
808505 TTTTTGAATTTTTAAAATTCATCAAATATTATTATCTATTTCATATTAATTTAGTTCGCAAAAAT
1 TTTTT-AATTTTTAAAATTCATCAAATATTATTATCTATTTCATAGTAATTCAGTTCGCAAAAAT
808570 TCATTCATTTCCATAAAATTTGAAATTTTTCTTGAAATTTTCCTTTTTTCTAAAATACGGAGTTT
65 TCATTCATTTCCATAAAATTTGAAATTTTTCTTGAAA--TT-CTTTTTTCTAAAATACGGAGTTT
808635 TCTACTCAGTAAATT
127 TCTACTCAGTAAATT
808650 TTT
1 TTT
808653 CGAGGAGATT
Statistics
Matches: 128, Mismatches: 12, Indels: 9
0.86 0.08 0.06
Matches are distributed among these distances:
138 9 0.07
139 82 0.64
142 1 0.01
144 6 0.05
145 30 0.23
ACGTcount: A:0.32, C:0.12, G:0.06, T:0.51
Consensus pattern (141 bp):
TTTTTAATTTTTAAAATTCATCAAATATTATTATCTATTTCATAGTAATTCAGTTCGCAAAAATT
CATTCATTTCCATAAAATTTGAAATTTTTCTTGAAATTCTTTTTTCTAAAATACGGAGTTTTCTA
CTCAGTAAATT
Found at i:808766 original size:304 final size:308
Alignment explanation
Indices: 808211--808781 Score: 809
Period size: 307 Copynumber: 1.9 Consensus size: 308
808201 TAAAAGTTTA
* **
808211 AAAATTCATCAAATATTATTATTTAAACACCATTAATTCAGTTTTCAAAAATTCATTCAATTCCA
1 AAAATTCATCAAATATTATTATCTAAACACCATTAATTCAGTTCGCAAAAATTCATTCAATTCCA
* * * * * *
808276 TAAATTTTGAATTTTTTGTTAAAATTTTCCTTTTTTTGATATACGGAGTTTTCTACTCTGTAATA
66 TAAAATTTGAAATTTTTCTTAAAATTTTCCTTTTTTTAAAATACGGAGTTTTCTACTCAGTAATA
* *
808341 ATTTTTTTGACAGCAATTTTTCTTGGTTTTTAATTTTTAAAATTCATCAAATATTATTATTTATT
131 ATTTTTTCGACAG-AATTTTTCTTGGTTTTTAATTTTTAAAATTCATAAAATATTATTATTTATT
* *
808406 TCATAGTAATTCATTTTTCAAAAATTCATTCATTTCCATAAATTTTTAATTTTTTCCTTGAA-TT
195 TCATAGTAATTCAGTTTTCAAAAATTCATTCATTTCCATAAATTTTGAATTTTTTCCTTGAAGTT
808470 TT-TTTTAAAATGCGGAGTTTTCTATTCCGTAAATTTTTTTGAATTTTT
260 TTCTTTTAAAATGCGGAGTTTTCTATTCCGTAAATTTTTTTGAATTTTT
** * * *
808518 AAAATTCATCAAATATTATTATCTATTTCA-TATTAATTTAGTTCGCAAAAATTCATTCATTTCC
1 AAAATTCATCAAATATTATTATCTA-AACACCATTAATTCAGTTCGCAAAAATTCATTCAATTCC
*
808582 ATAAAATTTGAAATTTTTCTTGAAATTTTCCTTTTTTCTAAAATACGGAGTTTTCTACTCAGT-A
65 ATAAAATTTGAAATTTTTCTTAAAATTTTCCTTTTTT-TAAAATACGGAGTTTTCTACTCAGTAA
* *
808646 -AA-TTTTTCGA-GGAGATTTTTCTT-GTTCTTTGATTTTTAAAATTCATAAAATATTATTATTT
129 TAATTTTTTCGACAGA-ATTTTTCTTGGTT-TTTAATTTTTAAAATTCATAAAATATTATTATTT
* * *
808707 ATTTTATATTAATTCAGTTTTCAAAAACTTCATTCATTTCCCTAAATTTTGAA-TTTTTCCTTGA
192 ATTTCATAGTAATTCAGTTTTCAAAAA-TTCATTCATTTCCATAAATTTTGAATTTTTTCCTTGA
808771 AGTTTTCTTTT
256 AGTTTTCTTTT
808782 TTTTCAAAAT
Statistics
Matches: 233, Mismatches: 24, Indels: 15
0.86 0.09 0.06
Matches are distributed among these distances:
303 4 0.02
304 78 0.33
305 34 0.15
306 6 0.03
307 87 0.37
308 24 0.10
ACGTcount: A:0.31, C:0.12, G:0.07, T:0.50
Consensus pattern (308 bp):
AAAATTCATCAAATATTATTATCTAAACACCATTAATTCAGTTCGCAAAAATTCATTCAATTCCA
TAAAATTTGAAATTTTTCTTAAAATTTTCCTTTTTTTAAAATACGGAGTTTTCTACTCAGTAATA
ATTTTTTCGACAGAATTTTTCTTGGTTTTTAATTTTTAAAATTCATAAAATATTATTATTTATTT
CATAGTAATTCAGTTTTCAAAAATTCATTCATTTCCATAAATTTTGAATTTTTTCCTTGAAGTTT
TCTTTTAAAATGCGGAGTTTTCTATTCCGTAAATTTTTTTGAATTTTT
Found at i:808857 original size:167 final size:164
Alignment explanation
Indices: 808505--808940 Score: 588
Period size: 167 Copynumber: 2.6 Consensus size: 164
808495 TCCGTAAATT
* * **
808505 TTTTTGAATTTTTAAAATTCATCAAATATTATTATCTATTTCATATTAATTTAGTTCGCAAAAAT
1 TTTTTG-ATTTTTAAAATTCATCAAATATTATTATTTATTTCATATTAATTCAGTTTTCAAAAAT
* *
808570 TCATTCATTTCCATAAAATTTGAAATTTTT-CTTGAAATTTTCCTTTTTTCTAAAATACGGAGTT
65 TCATTCATTTCCATAAATTTTG-AATTTTTCCTTGAAATTTTCCTTTTTTCTAAAATACGAAGTT
808634 TTCTACTCAGTAAATTTTTCGAGGAGATTTTTCTTG
129 TTCTACTCAGTAAATTTTTCGAGGAGATTTTTCTTG
* *
808670 TTCTTTGATTTTTAAAATTCATAAAATATTATTATTTATTTTATATTAATTCAGTTTTCAAAAAC
1 TT-TTTGATTTTTAAAATTCATCAAATATTATTATTTATTTCATATTAATTCAGTTTTCAAAAA-
* * *
808735 TTCATTCATTTCCCTAAATTTTGAATTTTTCCTTGAAGTTTT-CTTTTTTTTCAAAATACGAAGT
64 TTCATTCATTTCCATAAATTTTGAATTTTTCCTTGAAATTTTCCTTTTTTCT-AAAATACGAAGT
* * * *
808799 TTTCTACTCCGTAATTTTTTTCGGGGGGATTTTTCTTGG
128 TTTCTACTCAGTAA-ATTTTTCGAGGAGATTTTTCTT-G
*
808838 TTTTTGATTTTTAAAATTCATCAAATATTATTGTTTATTTCATATTAATTCAGTTTTCAAAAATT
1 TTTTTGATTTTTAAAATTCATCAAATATTATTATTTATTTCATATTAATTCAGTTTTCAAAAATT
* * * ** *
808903 CTTTTATTTCCTTGGATTATGAATTTTTTCCTTGAAAT
66 CATTCATTTCCATAAATTTTGAA-TTTTTCCTTGAAAT
808941 CCTTATTTCT
Statistics
Matches: 239, Mismatches: 25, Indels: 12
0.87 0.09 0.04
Matches are distributed among these distances:
165 68 0.28
166 78 0.33
167 90 0.38
168 3 0.01
ACGTcount: A:0.29, C:0.12, G:0.08, T:0.51
Consensus pattern (164 bp):
TTTTTGATTTTTAAAATTCATCAAATATTATTATTTATTTCATATTAATTCAGTTTTCAAAAATT
CATTCATTTCCATAAATTTTGAATTTTTCCTTGAAATTTTCCTTTTTTCTAAAATACGAAGTTTT
CTACTCAGTAAATTTTTCGAGGAGATTTTTCTTG
Found at i:808984 original size:167 final size:161
Alignment explanation
Indices: 808505--808999 Score: 552
Period size: 167 Copynumber: 3.0 Consensus size: 161
808495 TCCGTAAATT
* * **
808505 TTTTTGAATTTTTAAAATTCATCAAATATTATTATCTATTTCATATTAATTTAGTTCGCAAAAAT
1 TTTTTG-ATTTTTAAAATTCATCAAATATTATTATTTATTTCATATTAATTCAGTTTTCAAAAAT
* *
808570 TCATTCATTTCCATAAAATTTGAAATTTTT-CTTGAAATTTTCCTTTTTTCTAAAATACGGAGTT
65 TCATTCATTTCC-TTAAATTTG-AATTTTTCCTTGAAATCTT--TTTTTTC-AAAATACGG-GTT
* *
808634 TTCTACT-CAGTAAA--TTTTTCGAGGAGATTTTTCTTG
124 TTCTACTCCA-TAAATTTTTTTCGGGGGGATTTTTCTTG
* *
808670 TTCTTTGATTTTTAAAATTCATAAAATATTATTATTTATTTTATATTAATTCAGTTTTCAAAAAC
1 TT-TTTGATTTTTAAAATTCATCAAATATTATTATTTATTTCATATTAATTCAGTTTTCAAAAA-
* * *
808735 TTCATTCATTTCCCTAAATTTTGAATTTTTCCTTGAAGTTTTCTTTTTTTTCAAAATACGAAGTT
64 TTCATTCATTTCCTTAAA-TTTGAATTTTTCCTTGAA---ATCTTTTTTTTCAAAATACG-GGTT
*
808800 TTCTACTCCGT-AATTTTTTTCGGGGGGATTTTTCTTGG
124 TTCTACTCCATAAATTTTTTTCGGGGGGATTTTTCTT-G
*
808838 TTTTTGATTTTTAAAATTCATCAAATATTATTGTTTATTTCATATTAATTCAGTTTTCAAAAATT
1 TTTTTGATTTTTAAAATTCATCAAATATTATTATTTATTTCATATTAATTCAGTTTTCAAAAATT
* * ** * *
808903 CTTTTATTTCCTTGGATTATGAATTTTTTCCTTGAAATCCTTATTTCTTCGAAAA-ATTGGGTTT
66 CATTCATTTCCTTAAATT-TGAA-TTTTTCCTTGAAAT-CTT-TTTTTTC-AAAATA-CGGGTTT
*
808967 TCTACTCCATAAATTTTTTTCGGGGGAATTTTT
125 TCTACTCCATAAATTTTTTTCGGGGGGATTTTT
809000 TTCGATTTAA
Statistics
Matches: 283, Mismatches: 28, Indels: 36
0.82 0.08 0.10
Matches are distributed among these distances:
164 1 0.00
165 70 0.25
166 83 0.29
167 123 0.43
168 3 0.01
169 3 0.01
ACGTcount: A:0.28, C:0.12, G:0.09, T:0.51
Consensus pattern (161 bp):
TTTTTGATTTTTAAAATTCATCAAATATTATTATTTATTTCATATTAATTCAGTTTTCAAAAATT
CATTCATTTCCTTAAATTTGAATTTTTCCTTGAAATCTTTTTTTTCAAAATACGGGTTTTCTACT
CCATAAATTTTTTTCGGGGGGATTTTTCTTG
Found at i:809156 original size:216 final size:214
Alignment explanation
Indices: 808858--809274 Score: 699
Period size: 216 Copynumber: 1.9 Consensus size: 214
808848 TTAAAATTCA
* * * *
808858 TCAAATATTATTGTTTATTTCATATTAATTCAGTTTTCAAAAATTCTTTTATTTCCTTGGATTAT
1 TCAAATATTATTATTTATTTCATATTAATTCAGTTTTCAAAAATTCATTCATTTCCTTGAATTAT
* *
808923 GAATTTTTTCCTTGAAATCCTTATTTCTTCGAAAAATTGGGTTTTCTACTCCATAAATTTTTTTC
66 GAATTTTTTCCTTGAAATCC-TATTTCTTCGAAAAACTGAGTTTTCTACTCCATAAATTTTTTT-
*
808988 GGGGGAATTTTTTTCGATTTAAAATTTTAAAACTCATATAATAATTTCATTAAATTCATATTAAA
129 GGGAGAATTTTTTTCGATTTAAAATTTTAAAACTCATATAATAATTTCATTAAATTCATATTAAA
*
809053 TTAGTTTTATTTCATATTAAT
194 TCAGTTTTATTTCATATTAAT
*
809074 TCAAATATTATTATTTATTTCATATTAATTCAGTTTTCAAAAATTCATTCATTTCCTTGAATTTT
1 TCAAATATTATTATTTATTTCATATTAATTCAGTTTTCAAAAATTCATTCATTTCCTTGAATTAT
*
809139 GAATTTTTTCTTTGAAATCCTATTTCTTCGAAAAACTGAGTTTTCTACTCCATAAATTTTTTTGG
66 GAATTTTTTCCTTGAAATCCTATTTCTTCGAAAAACTGAGTTTTCTACTCCATAAATTTTTTTGG
* * *
809204 GAGAATTTTTTTCGATTTAAAATTTTAAAACTCATATGATATTTTCATTAAATTTATATTAAATC
131 GAGAATTTTTTTCGATTTAAAATTTTAAAACTCATATAATAATTTCATTAAATTCATATTAAATC
809269 AGTTTT
196 AGTTTT
809275 GAAAAATTCA
Statistics
Matches: 188, Mismatches: 13, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
214 68 0.36
215 41 0.22
216 79 0.42
ACGTcount: A:0.31, C:0.11, G:0.07, T:0.50
Consensus pattern (214 bp):
TCAAATATTATTATTTATTTCATATTAATTCAGTTTTCAAAAATTCATTCATTTCCTTGAATTAT
GAATTTTTTCCTTGAAATCCTATTTCTTCGAAAAACTGAGTTTTCTACTCCATAAATTTTTTTGG
GAGAATTTTTTTCGATTTAAAATTTTAAAACTCATATAATAATTTCATTAAATTCATATTAAATC
AGTTTTATTTCATATTAAT
Found at i:809790 original size:12 final size:11
Alignment explanation
Indices: 809775--809824 Score: 57
Period size: 11 Copynumber: 4.5 Consensus size: 11
809765 AAAACTCAGC
809775 AAAAAAATAGAG
1 AAAAAAA-AGAG
809787 AAAAGAAAAGAG
1 AAAA-AAAAGAG
*
809799 AAAAAAAAAAG
1 AAAAAAAAGAG
*
809810 AAAAAACA-AG
1 AAAAAAAAGAG
809820 AAAAA
1 AAAAA
809825 TAGCAAAACT
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
10 7 0.20
11 13 0.37
12 12 0.34
13 3 0.09
ACGTcount: A:0.82, C:0.02, G:0.14, T:0.02
Consensus pattern (11 bp):
AAAAAAAAGAG
Found at i:809795 original size:14 final size:12
Alignment explanation
Indices: 809775--809824 Score: 59
Period size: 12 Copynumber: 4.3 Consensus size: 12
809765 AAAACTCAGC
*
809775 AAAAAAATAGAG
1 AAAAAAAAAGAG
*
809787 AAAAGAAAAGAG
1 AAAAAAAAAGAG
809799 AAAAAAAAA-AG
1 AAAAAAAAAGAG
*
809810 AAAAAACAAGA-
1 AAAAAAAAAGAG
809821 AAAA
1 AAAA
809825 TAGCAAAACT
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
11 14 0.42
12 19 0.58
ACGTcount: A:0.82, C:0.02, G:0.14, T:0.02
Consensus pattern (12 bp):
AAAAAAAAAGAG
Found at i:810858 original size:173 final size:173
Alignment explanation
Indices: 810560--811047 Score: 633
Period size: 173 Copynumber: 2.8 Consensus size: 173
810550 ATACTAATCA
* * *
810560 TTTTCATATATTTCTAATATTCCCATGGGTATCCGTGGGGGTTTAGAAATATTTAAAACTTTTCA
1 TTTTCA-AAATTTCTAATATTCCCATGGGTATCCGTGGGGGTATAAAAATATTTAAAACTTTTCA
* * * * * *
810625 TATCTTTTCGAGTTTCTATTAAGGTACGAAACAAAAATTTTCAAAA-AAAAAATAATAAAATAAA
65 TATCTTTTCGGGTTTCCATTAAGATACGAAA-TAAATTTTTGAAAATAAAAAATAATAAAATAAA
* *
810689 ATAATAAATAATTCTTTTTCATCCAATAAAAATTATCACTTGAAT
129 ATAATAAATAATTATTTTTCATCCAATAAAAATTATCACCTGAAT
* * * * * * *
810734 TTTTCAAAATTTCTAATATTCTCATTGGTATCTGCGGAGGTGTAAAAATATTTACAAC-TTTCAT
1 TTTTCAAAATTTCTAATATTCCCATGGGTATCCGTGGGGGTATAAAAATATTTAAAACTTTTCAT
*
810798 ATCTTTTCGGGCTTCCATTAAGATACGAAATGAAATTTTTGAAAATAAAAAATAATAAAATAAAA
66 ATCTTTTCGGGTTTCCATTAAGATACGAAAT-AAATTTTTGAAAATAAAAAATAATAAAATAAAA
810863 TAATAAATAATTATTTTTCATCCAATAAAAATTATCACCTGAAT
130 TAATAAATAATTATTTTTCATCCAATAAAAATTATCACCTGAAT
* * *
810907 TTTTCAAAATTTTTAATATTCCCATGGGTATCCGTGGGGGTATGAAAATTTTTAAAACTTTTCAT
1 TTTTCAAAATTTCTAATATTCCCATGGGTATCCGTGGGGGTATAAAAATATTTAAAACTTTTCAT
* * * *
810972 ATCTTTTTGGTTTTCCATTAAGGA-ACGAAATAAATGTTTTGGGAAATAAAAAAATTAAATTAAA
66 ATCTTTTCGGGTTTCCATTAA-GATACGAAATAAAT-TTTT-GAAAAT-AAAAAA-T-AATAAAA
811036 TAAAATAA-AAAT
125 TAAAATAATAAAT
811048 TATAATCCCA
Statistics
Matches: 272, Mismatches: 33, Indels: 15
0.85 0.10 0.05
Matches are distributed among these distances:
172 43 0.16
173 156 0.57
174 41 0.15
175 7 0.03
176 6 0.02
177 5 0.02
178 14 0.05
ACGTcount: A:0.41, C:0.11, G:0.10, T:0.38
Consensus pattern (173 bp):
TTTTCAAAATTTCTAATATTCCCATGGGTATCCGTGGGGGTATAAAAATATTTAAAACTTTTCAT
ATCTTTTCGGGTTTCCATTAAGATACGAAATAAATTTTTGAAAATAAAAAATAATAAAATAAAAT
AATAAATAATTATTTTTCATCCAATAAAAATTATCACCTGAAT
Found at i:811172 original size:153 final size:153
Alignment explanation
Indices: 810886--811180 Score: 371
Period size: 153 Copynumber: 1.9 Consensus size: 153
810876 TTTTTCATCC
* * * * * *
810886 AATAAAAATTATCACCTGAATTTTTCAAAATTTTTAATATTCCCATGGGTATCCGTGGGGGTATG
1 AATAAAAATTATAACCTCAATTTTTCAAAATTTTCAATATTCCCATAGGCATCCGTAGGGGTATG
* * ** * **
810951 AAAATTTTTAAAACTTTTCATATCTTTTTGGTTTTCCATTAAGGAACGAAATAAATGTTTTGGGA
66 AAAATTTTTAAAACCTTT-ATATCTTTTTGATCCTCCATTAAGGAACGAAAAAAATGTTTTGAAA
811016 AATAAAA-AAATTAAATTAAATAA
130 AATAAAATAAATTAAATTAAATAA
* * *
811039 AATAAAAATTATAATCC-CAATTTTTTAGAATTTTCAATATTCCTATAGGCATCCGTAGGGGTAT
1 AATAAAAATTATAA-CCTCAATTTTTCAAAATTTTCAATATTCCCATAGGCATCCGTAGGGGTAT
* *
811103 GAAAATTTTTAAAACCTTT-TATCTTTTTGATCCTCCATTAAGGCACGAAAAAAAATTTTTTGAA
65 GAAAATTTTTAAAACCTTTATATCTTTTTGATCCTCCATTAAGGAACG-AAAAAAATGTTTTG-A
811167 AAAATAAAATAAAT
128 AAAATAAAATAAAT
811181 ATTTTAATTA
Statistics
Matches: 120, Mismatches: 18, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
151 24 0.20
152 12 0.10
153 78 0.65
154 6 0.05
ACGTcount: A:0.40, C:0.11, G:0.12, T:0.37
Consensus pattern (153 bp):
AATAAAAATTATAACCTCAATTTTTCAAAATTTTCAATATTCCCATAGGCATCCGTAGGGGTATG
AAAATTTTTAAAACCTTTATATCTTTTTGATCCTCCATTAAGGAACGAAAAAAATGTTTTGAAAA
ATAAAATAAATTAAATTAAATAA
Found at i:811692 original size:156 final size:155
Alignment explanation
Indices: 811407--811769 Score: 453
Period size: 156 Copynumber: 2.3 Consensus size: 155
811397 TTTTATCATC
* ** *
811407 CTTTTTAAGTCCTTTAGGGGTATCGGGTACTTCTACGTCAAAGATATCTTTTAAGAATATTTTAG
1 CTTTTTAAGTCCTTTAGGGGTATCGGGCACTTCTACGTCAAAGATATCTCCTAAGAACATTTTAG
*
811472 ACATTTCTTAGAACCGAGTCCTAAGTTGTCACCGGGTTCGCTTTAATGCCGAAAGTGGGTATTTA
66 ACATTTCTTAGAACCAAGTCCTAAGTTGTCACCGGGTTCGCTTTAATGCCGAAAGTGGGTATTTA
* * *
811537 GGATAGGTTCATCCCATTTTGTAA-T
131 GGATAGATTCATCCCA-TCTATAATT
* * **
811562 CTTTTTTAAGTCCTTTAGGGATATCGGGCACTTTTACGTCAAAGATATCTCCTAAGGGCATTTTA
1 C-TTTTTAAGTCCTTTAGGGGTATCGGGCACTTCTACGTCAAAGATATCTCCTAAGAACATTTTA
* * * * * *
811627 GTA-ATTTTTTAGAACCAAGTCTTAGGTTGTCACCGGGTTTGCTTTTATGCCGAAGGTGGGTATT
65 G-ACATTTCTTAGAACCAAGTCCTAAGTTGTCACCGGGTTCGCTTTAATGCCGAAAGTGGGTATT
* *
811691 TAGGATATATTCGTCCCATCTATAATT
129 TAGGATAGATTCATCCCATCTATAATT
* * * * *
811718 CTTTTTAAGTCCTTTAGGGGTATC-GGTACTTCTATGTCGAAGGTATCCCCTA
1 CTTTTTAAGTCCTTTAGGGGTATCGGGCACTTCTACGTCAAAGATATCTCCTA
811770 GGGCCATTTT
Statistics
Matches: 178, Mismatches: 27, Indels: 7
0.84 0.13 0.03
Matches are distributed among these distances:
154 22 0.12
155 28 0.16
156 127 0.71
157 1 0.01
ACGTcount: A:0.24, C:0.17, G:0.21, T:0.38
Consensus pattern (155 bp):
CTTTTTAAGTCCTTTAGGGGTATCGGGCACTTCTACGTCAAAGATATCTCCTAAGAACATTTTAG
ACATTTCTTAGAACCAAGTCCTAAGTTGTCACCGGGTTCGCTTTAATGCCGAAAGTGGGTATTTA
GGATAGATTCATCCCATCTATAATT
Found at i:817042 original size:20 final size:20
Alignment explanation
Indices: 817017--817133 Score: 108
Period size: 20 Copynumber: 5.7 Consensus size: 20
817007 TTTTAACTAG
*
817017 ATGTATTGATACATTGAACA
1 ATGTATCGATACATTGAACA
* *
817037 ATGTATCGATACATCTGGGTATA
1 ATGTATCGATACAT-T--GAACA
* *
817060 ATGTATCAATACATTGAAGA
1 ATGTATCGATACATTGAACA
* * *
817080 ATGTATCGATACATTCATCC
1 ATGTATCGATACATTGAACA
* *
817100 ATGTATCGATACATTAAAAA
1 ATGTATCGATACATTGAACA
*
817120 ATGTATCAATACAT
1 ATGTATCGATACAT
817134 CTAGGTAAAA
Statistics
Matches: 78, Mismatches: 16, Indels: 6
0.78 0.16 0.06
Matches are distributed among these distances:
20 60 0.77
21 1 0.01
22 1 0.01
23 16 0.21
ACGTcount: A:0.39, C:0.14, G:0.14, T:0.33
Consensus pattern (20 bp):
ATGTATCGATACATTGAACA
Found at i:817964 original size:51 final size:51
Alignment explanation
Indices: 817888--818027 Score: 201
Period size: 51 Copynumber: 2.7 Consensus size: 51
817878 GGAAAGGTAA
* *
817888 CCAGATGTATCGATACATTCTTCAATATATCGATACATTCTATCCTTTTAC
1 CCAGATGTATCGATACATTCTTCAATGTATCGATACATTCGATCCTTTTAC
* * *
817939 CCAGATGTACCAATACATTCTTCAATGTATCGATACATTCGATCTTTTTAC
1 CCAGATGTATCGATACATTCTTCAATGTATCGATACATTCGATCCTTTTAC
* *
817990 CC-GTATGTATCGATACATTTTTCAATGTATTGATACAT
1 CCAG-ATGTATCGATACATTCTTCAATGTATCGATACAT
818028 CTAGTTAAAA
Statistics
Matches: 79, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
50 1 0.01
51 78 0.99
ACGTcount: A:0.29, C:0.21, G:0.10, T:0.39
Consensus pattern (51 bp):
CCAGATGTATCGATACATTCTTCAATGTATCGATACATTCGATCCTTTTAC
Found at i:821450 original size:56 final size:57
Alignment explanation
Indices: 821389--822025 Score: 563
Period size: 56 Copynumber: 11.4 Consensus size: 57
821379 CTAAACTTGC
* * * * * * *
821389 GTGGGCTTTAAAAGGAAGCCATTGACTCGTGGGCTTT-ACAAGGATGCCACTAACTC
1 GTGGGCTTTGAAAGGATGCCACTAACTCGTGGGCTTTGAAAAGGATGCCACTGACTT
* * *
821445 GTGGGCTTTGGAAGGATGCCACTAACTTGTGGGCTTTAGAAAA--ATGTCACTGACTT
1 GTGGGCTTTGAAAGGATGCCACTAACTCGTGGGCTTT-GAAAAGGATGCCACTGACTT
* * * *
821501 GTGGGCTTTGAAAGAATGCCACTGACTCGTGGGCTTTGAAAAGG-TACCGCTGACTT
1 GTGGGCTTTGAAAGGATGCCACTAACTCGTGGGCTTTGAAAAGGATGCCACTGACTT
* * * * *
821557 GTGGGCTATGAAAGGGTGCCACTAATTCAT--GCTTTAAAAAGGATGCCACTGACTT
1 GTGGGCTTTGAAAGGATGCCACTAACTCGTGGGCTTTGAAAAGGATGCCACTGACTT
* *
821612 GTGGGCTTTGAAAGGATGCCACTGATTCGTGGGCTTTGAAAAGG-TGCCACTGACTT
1 GTGGGCTTTGAAAGGATGCCACTAACTCGTGGGCTTTGAAAAGGATGCCACTGACTT
* * *
821668 GTGGGCTATGAAAAGG-TGCCACTAATTCGTGGGCTTTGAAAAGGATGCCACTGAGTT
1 GTGGGCTTTG-AAAGGATGCCACTAACTCGTGGGCTTTGAAAAGGATGCCACTGACTT
* ** * *
821725 GTGGGCTTTGAAAGG-TGCCACTGACTTATGGGCTATGAAAAGG-GGCCACTGACTT
1 GTGGGCTTTGAAAGGATGCCACTAACTCGTGGGCTTTGAAAAGGATGCCACTGACTT
* * * * *
821780 GTGGGCTTGGAAAAAATGCTGCCACTAACTTGTGGGCTTGGAAAA-GATGCCACTGACTT
1 GTGGGCTTTG---AAAGGATGCCACTAACTCGTGGGCTTTGAAAAGGATGCCACTGACTT
* * * * * * * *
821839 GAGGGTTTTGAAAGGGTGCCACTGATTCATGGGCTTTGAAAAGGATG-CATTAACTT
1 GTGGGCTTTGAAAGGATGCCACTAACTCGTGGGCTTTGAAAAGGATGCCACTGACTT
* * * ** * * *
821895 GTGGGCTTTGAAATGATGCCATTAACTTGTGTAC-TT-AAAAGGGTGCCACGGAGTT
1 GTGGGCTTTGAAAGGATGCCACTAACTCGTGGGCTTTGAAAAGGATGCCACTGACTT
* * * * * *
821950 GTAGACTTTTAATA--ATACCACTAACTTGTGGGCTTT-AAAATGATGCCACTGACTT
1 GTGGGCTTTGAA-AGGATGCCACTAACTCGTGGGCTTTGAAAAGGATGCCACTGACTT
* * *
822005 GTGGAC-TTAAAAGGGTGCCAC
1 GTGGGCTTTGAAAGGATGCCAC
822026 AGAGTTGTGG
Statistics
Matches: 469, Mismatches: 92, Indels: 41
0.78 0.15 0.07
Matches are distributed among these distances:
53 1 0.00
54 38 0.08
55 103 0.22
56 239 0.51
57 40 0.09
58 8 0.02
59 40 0.09
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.28
Consensus pattern (57 bp):
GTGGGCTTTGAAAGGATGCCACTAACTCGTGGGCTTTGAAAAGGATGCCACTGACTT
Found at i:821792 original size:28 final size:28
Alignment explanation
Indices: 821389--822035 Score: 490
Period size: 28 Copynumber: 23.1 Consensus size: 28
821379 CTAAACTTGC
* * *
821389 GTGGGCTTT-AAAAGGAAGCCATTGACTC
1 GTGGGCTTTGAAAAGG-TGCCACTGACTT
* * *
821417 GTGGGCTTT-ACAAGGATGCCACTAACTC
1 GTGGGCTTTGAAAAGG-TGCCACTGACTT
* *
821445 GTGGGCTTTG-GAAGGATGCCACTAACTT
1 GTGGGCTTTGAAAAGG-TGCCACTGACTT
* *
821473 GTGGGCTTTAGAAAA-ATGTCACTGACTT
1 GTGGGCTTT-GAAAAGGTGCCACTGACTT
* *
821501 GTGGGCTTTG-AAAGAATGCCACTGACTC
1 GTGGGCTTTGAAAAG-GTGCCACTGACTT
* *
821529 GTGGGCTTTGAAAAGGTACCGCTGACTT
1 GTGGGCTTTGAAAAGGTGCCACTGACTT
* * *
821557 GTGGGCTATGAAAGGGTGCCACT-AATT
1 GTGGGCTTTGAAAAGGTGCCACTGACTT
* *
821584 CAT--GCTTTAAAAAGGATGCCACTGACTT
1 -GTGGGCTTTGAAAAGG-TGCCACTGACTT
821612 GTGGGCTTTG-AAAGGATGCCACTGA-TT
1 GTGGGCTTTGAAAAGG-TGCCACTGACTT
821639 CGTGGGCTTTGAAAAGGTGCCACTGACTT
1 -GTGGGCTTTGAAAAGGTGCCACTGACTT
* *
821668 GTGGGCTATGAAAAGGTGCCACT-AATT
1 GTGGGCTTTGAAAAGGTGCCACTGACTT
*
821695 CGTGGGCTTTGAAAAGGATGCCACTGAGTT
1 -GTGGGCTTTGAAAAGG-TGCCACTGACTT
821725 GTGGGCTTTG-AAAGGTGCCACTGACTT
1 GTGGGCTTTGAAAAGGTGCCACTGACTT
* * *
821752 ATGGGCTATGAAAAGGGGCCACTGACTT
1 GTGGGCTTTGAAAAGGTGCCACTGACTT
* * *
821780 GTGGGCTTGGAAAAAATGCTGCCACTAACTT
1 GTGGGCTTTG--AAAA-GGTGCCACTGACTT
* *
821811 GTGGGCTTGGAAAAGATGCCACTGACTT
1 GTGGGCTTTGAAAAGGTGCCACTGACTT
* * *
821839 GAGGGTTTTGAAAGGGTGCCACTGA-TT
1 GTGGGCTTTGAAAAGGTGCCACTGACTT
* * *
821866 CATGGGCTTTGAAAAGGATG-CATTAACTT
1 -GTGGGCTTTGAAAAGG-TGCCACTGACTT
* * * *
821895 GTGGGCTTTGAAATGATGCCATTAACTT
1 GTGGGCTTTGAAAAGGTGCCACTGACTT
** * *
821923 GTGTAC-TT-AAAAGGGTGCCACGGAGTT
1 GTGGGCTTTGAAAA-GGTGCCACTGACTT
* * * * *
821950 GTAGACTTTTAATAA--TACCACTAACTT
1 GTGGGCTTTGAA-AAGGTGCCACTGACTT
*
821977 GTGGGCTTT-AAAATGATGCCACTGACTT
1 GTGGGCTTTGAAAA-GGTGCCACTGACTT
* * *
822005 GTGGAC-TT-AAAAGGGTGCCACAGAGTT
1 GTGGGCTTTGAAAA-GGTGCCACTGACTT
822032 GTGG
1 GTGG
822036 ACTTAAAAAG
Statistics
Matches: 506, Mismatches: 81, Indels: 65
0.78 0.12 0.10
Matches are distributed among these distances:
25 2 0.00
26 17 0.03
27 91 0.18
28 320 0.63
29 44 0.09
30 11 0.02
31 21 0.04
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.28
Consensus pattern (28 bp):
GTGGGCTTTGAAAAGGTGCCACTGACTT
Found at i:821811 original size:31 final size:31
Alignment explanation
Indices: 821769--821829 Score: 104
Period size: 31 Copynumber: 2.0 Consensus size: 31
821759 ATGAAAAGGG
*
821769 GCCACTGACTTGTGGGCTTGGAAAAAATGCT
1 GCCACTAACTTGTGGGCTTGGAAAAAATGCT
*
821800 GCCACTAACTTGTGGGCTTGGAAAAGATGC
1 GCCACTAACTTGTGGGCTTGGAAAAAATGC
821830 CACTGACTTG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.25
Consensus pattern (31 bp):
GCCACTAACTTGTGGGCTTGGAAAAAATGCT
Found at i:821951 original size:27 final size:27
Alignment explanation
Indices: 821921--822239 Score: 323
Period size: 27 Copynumber: 11.6 Consensus size: 27
821911 TGCCATTAAC
*
821921 TTGTGTACTTAAAAGGGTGCCACGGAG
1 TTGTGGACTTAAAAGGGTGCCACGGAG
* ** *** * ** *
821948 TTGTAGACTTTTAATAATACCACTAAC
1 TTGTGGACTTAAAAGGGTGCCACGGAG
* * * * *
821975 TTGTGGGCTTTAAAATGATGCCACTGAC
1 TTGTGGAC-TTAAAAGGGTGCCACGGAG
*
822003 TTGTGGACTTAAAAGGGTGCCACAGAG
1 TTGTGGACTTAAAAGGGTGCCACGGAG
*
822030 TTGTGGACTTAAAAAGGGCTGCCAAGGAG
1 TTGTGGACTT-AAAAGGG-TGCCACGGAG
*
822059 TTGTGGACTTAGAAGGGTGCCACGGAG
1 TTGTGGACTTAAAAGGGTGCCACGGAG
* *
822086 TTATGGACTTAAAAGGGTGCCATGGAG
1 TTGTGGACTTAAAAGGGTGCCACGGAG
**
822113 TTGTGGACTTTAAAAGGGTGCCACAAAG
1 TTGTGGAC-TTAAAAGGGTGCCACGGAG
* * * *
822141 TTGTAGACCTAAAAAGGGCTACCACGGAA
1 TTGTGGA-CTTAAAAGGG-TGCCACGGAG
822170 TTGTGGACTTAAAAGGGTGCCACGGAG
1 TTGTGGACTTAAAAGGGTGCCACGGAG
*
822197 TTGTGGACTTCAAAGGGTGCCACGGAG
1 TTGTGGACTTAAAAGGGTGCCACGGAG
*
822224 TTGTGGACTTTAAAGG
1 TTGTGGACTTAAAAGG
822240 ATGCTGTGAC
Statistics
Matches: 240, Mismatches: 46, Indels: 12
0.81 0.15 0.04
Matches are distributed among these distances:
27 136 0.57
28 73 0.30
29 31 0.13
ACGTcount: A:0.29, C:0.15, G:0.30, T:0.25
Consensus pattern (27 bp):
TTGTGGACTTAAAAGGGTGCCACGGAG
Found at i:821991 original size:82 final size:82
Alignment explanation
Indices: 821889--822039 Score: 248
Period size: 82 Copynumber: 1.8 Consensus size: 82
821879 AAGGATGCAT
* * * *
821889 TAACTTGTGGGCTTTGAAATGATGCCATTAACTTGTGTACTTAAAAGGGTGCCACGGAGTTGTAG
1 TAACTTGTGGGCTTTAAAATGATGCCACTAACTTGTGGACTTAAAAGGGTGCCACAGAGTTGTAG
821954 ACTTTTAATAATACCAC
66 ACTTTTAATAATACCAC
* *
821971 TAACTTGTGGGCTTTAAAATGATGCCACTGACTTGTGGACTTAAAAGGGTGCCACAGAGTTGTGG
1 TAACTTGTGGGCTTTAAAATGATGCCACTAACTTGTGGACTTAAAAGGGTGCCACAGAGTTGTAG
822036 ACTT
66 ACTT
822040 AAAAAGGGCT
Statistics
Matches: 63, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
82 63 1.00
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.32
Consensus pattern (82 bp):
TAACTTGTGGGCTTTAAAATGATGCCACTAACTTGTGGACTTAAAAGGGTGCCACAGAGTTGTAG
ACTTTTAATAATACCAC
Found at i:822064 original size:56 final size:54
Alignment explanation
Indices: 821921--822239 Score: 325
Period size: 55 Copynumber: 5.8 Consensus size: 54
821911 TGCCATTAAC
* * ** *** * *
821921 TTGTGTACTTAAAAGGGTGCCACGGAGTTGTAGACTTTTAATAATACCACTA-AC
1 TTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCAC-AGAG
* * * * *
821975 TTGTGGGCTTTAAAATGATGCCACTGACTTGTGGACTTAAAAGGGTGCCACAGAG
1 TTGTGGAC-TTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACAGAG
* * *
822030 TTGTGGACTTAAAAAGGGCTGCCAAGGAGTTGTGGACTTAGAAGGGTGCCACGGAG
1 TTGTGGACTT-AAAAGGG-TGCCACGGAGTTGTGGACTTAAAAGGGTGCCACAGAG
* * *
822086 TTATGGACTTAAAAGGGTGCCATGGAGTTGTGGACTTTAAAAGGGTGCCACAAAG
1 TTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGAC-TTAAAAGGGTGCCACAGAG
* * * * *
822141 TTGTAGACCTAAAAAGGGCTACCACGGAATTGTGGACTTAAAAGGGTGCCACGGAG
1 TTGTGGA-CTTAAAAGGG-TGCCACGGAGTTGTGGACTTAAAAGGGTGCCACAGAG
* *
822197 TTGTGGACTTCAAAGGGTGCCACGGAGTTGTGGACTTTAAAGG
1 TTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGG
822240 ATGCTGTGAC
Statistics
Matches: 217, Mismatches: 41, Indels: 14
0.80 0.15 0.05
Matches are distributed among these distances:
54 49 0.23
55 80 0.37
56 73 0.34
57 15 0.07
ACGTcount: A:0.29, C:0.15, G:0.30, T:0.25
Consensus pattern (54 bp):
TTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACAGAG
Found at i:822077 original size:138 final size:137
Alignment explanation
Indices: 821921--822238 Score: 354
Period size: 138 Copynumber: 2.3 Consensus size: 137
821911 TGCCATTAAC
* * * * *
821921 TTGTGTACTTAAAAGGGTGCCACGGAGTTGTAGACTTTTAATAATACCACT-AACTTGTGGGCTT
1 TTGTGGACTT-AAAGGGTGCCACGGAGTTGTGGACTTTAAAGAATACCA-TGAACTTGTGGACTT
* ** * * * *
821985 TAAAATGATGCCACTGACTTGTGGA-CTTAAAAGGG-TGCCACAGAGTTGTGGACTTAAAAAGGG
64 TAAAAGGATGCCACAAACTTGTAGACCTAAAAAGGGCTACCACAGAATTGTGGACTT-AAAAGGG
822048 CTGCCAAGGAG
128 -TGCCAAGGAG
* * ** * * *
822059 TTGTGGACTTAGAAGGGTGCCACGGAGTTATGGACTTAAAAGGGTGCCATGGAGTTGTGGACTTT
1 TTGTGGACTTA-AAGGGTGCCACGGAGTTGTGGACTTTAAAGAATACCATGAACTTGTGGACTTT
* * *
822124 AAAAGGGTGCCACAAAGTTGTAGACCTAAAAAGGGCTACCACGGAATTGTGGACTTAAAAGGGTG
65 AAAAGGATGCCACAAACTTGTAGACCTAAAAAGGGCTACCACAGAATTGTGGACTTAAAAGGGTG
*
822189 CCACGGAG
130 CCAAGGAG
822197 TTGTGGACTTCAAAGGGTGCCACGGAGTTGTGGACTTTAAAG
1 TTGTGGACTT-AAAGGGTGCCACGGAGTTGTGGACTTTAAAG
822239 GATGCTGTGA
Statistics
Matches: 150, Mismatches: 25, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
137 2 0.01
138 114 0.76
139 17 0.11
140 17 0.11
ACGTcount: A:0.29, C:0.15, G:0.30, T:0.25
Consensus pattern (137 bp):
TTGTGGACTTAAAGGGTGCCACGGAGTTGTGGACTTTAAAGAATACCATGAACTTGTGGACTTTA
AAAGGATGCCACAAACTTGTAGACCTAAAAAGGGCTACCACAGAATTGTGGACTTAAAAGGGTGC
CAAGGAG
Found at i:822131 original size:111 final size:111
Alignment explanation
Indices: 821984--822237 Score: 375
Period size: 111 Copynumber: 2.3 Consensus size: 111
821974 CTTGTGGGCT
* * * * * * *
821984 TTAAAATGATGCCACTGACTTGTGGAC-TTAAAAGGGTGCCACAGAGTTGTGGACTTAAAAAGGG
1 TTAAAAGGGTGCCACGGAGTTGTGGACTTTAAAAGGGTGCCACAAAGTTGTAGACCTAAAAAGGG
* * *
822048 CTGCCAAGGAGTTGTGGACTTAGAAGGGTGCCACGGAGTTATGGAC
66 CTACCAAGGAATTGTGGACTTAAAAGGGTGCCACGGAGTTATGGAC
*
822094 TTAAAAGGGTGCCATGGAGTTGTGGACTTTAAAAGGGTGCCACAAAGTTGTAGACCTAAAAAGGG
1 TTAAAAGGGTGCCACGGAGTTGTGGACTTTAAAAGGGTGCCACAAAGTTGTAGACCTAAAAAGGG
* *
822159 CTACCACGGAATTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGAC
66 CTACCAAGGAATTGTGGACTTAAAAGGGTGCCACGGAGTTATGGAC
*
822205 TTCAAAGGGTGCCACGGAGTTGTGGACTTTAAA
1 TTAAAAGGGTGCCACGGAGTTGTGGACTTTAAA
822238 GGATGCTGTG
Statistics
Matches: 128, Mismatches: 15, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
110 22 0.17
111 106 0.83
ACGTcount: A:0.30, C:0.15, G:0.31, T:0.24
Consensus pattern (111 bp):
TTAAAAGGGTGCCACGGAGTTGTGGACTTTAAAAGGGTGCCACAAAGTTGTAGACCTAAAAAGGG
CTACCAAGGAATTGTGGACTTAAAAGGGTGCCACGGAGTTATGGAC
Found at i:823036 original size:13 final size:13
Alignment explanation
Indices: 823018--823043 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
823008 CAATTTTTTG
823018 TGTATCGATACAT
1 TGTATCGATACAT
823031 TGTATCGATACAT
1 TGTATCGATACAT
823044 ACTTGGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:823058 original size:32 final size:33
Alignment explanation
Indices: 822999--823061 Score: 92
Period size: 32 Copynumber: 1.9 Consensus size: 33
822989 ACAAGCCAAG
** *
822999 GTATCGATACAATTTTTTGTGTATCGATACATT
1 GTATCGATACAATACTTGGTGTATCGATACATT
823032 GTATCGATAC-ATACTTGGTGTATCGATACA
1 GTATCGATACAATACTTGGTGTATCGATACA
823062 AGTTTGGCTA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
32 17 0.63
33 10 0.37
ACGTcount: A:0.29, C:0.14, G:0.17, T:0.40
Consensus pattern (33 bp):
GTATCGATACAATACTTGGTGTATCGATACATT
Found at i:828391 original size:13 final size:13
Alignment explanation
Indices: 828373--828398 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
828363 CAATTTTTTG
828373 TGTATCGATACAT
1 TGTATCGATACAT
828386 TGTATCGATACAT
1 TGTATCGATACAT
828399 ACTTGGTGTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:828841 original size:27 final size:27
Alignment explanation
Indices: 828783--829113 Score: 328
Period size: 27 Copynumber: 11.9 Consensus size: 27
828773 TCCTAACAGA
* * *
828783 TGCCATGGATTTGTGGACTTTAAAAGGA
1 TGCCACGGAGTTGTGGAC-TTAAAAGGT
828811 TGCCACGGAGTTGTGGACTTAAAA-GT
1 TGCCACGGAGTTGTGGACTTAAAAGGT
* *
828837 GTGCCACGGAGTTATGGGCTTAAAAGAAAAAGGT
1 -TGCCACGGAGTTGTGGACTT------AAAAGGT
* * *
828871 TGCCACAGAGTTGTAGACTTTAAAAGGA
1 TGCCACGGAGTTGTGGAC-TTAAAAGGT
* *
828899 TGCCACAGAGTTGTGGACTTAAATGGT
1 TGCCACGGAGTTGTGGACTTAAAAGGT
*
828926 TGCCACGGAGCTGTGGACTTAAAA-GT
1 TGCCACGGAGTTGTGGACTTAAAAGGT
*
828952 GTGCCACAGAGTTGTGGACTTAAAA-GT
1 -TGCCACGGAGTTGTGGACTTAAAAGGT
828979 GTGCCACGGAGTTGTGGACTTAAAAGGT
1 -TGCCACGGAGTTGTGGACTTAAAAGGT
* *
829007 TGCCATGGAGTTGTAGACTTAAAAGGT
1 TGCCACGGAGTTGTGGACTTAAAAGGT
* *
829034 TGCCACGGAGTTATGGACTTTAAAAGGG
1 TGCCACGGAGTTGTGGAC-TTAAAAGGT
** *
829062 TGCCACAAAGTTGTGGACATAAAA-GT
1 TGCCACGGAGTTGTGGACTTAAAAGGT
* *
829088 GTGCCACGGAGTTATGGGCTTAAAAG
1 -TGCCACGGAGTTGTGGACTTAAAAG
829114 AAAAAGGTTG
Statistics
Matches: 254, Mismatches: 35, Indels: 28
0.80 0.11 0.09
Matches are distributed among these distances:
26 4 0.02
27 164 0.65
28 64 0.25
33 18 0.07
34 4 0.02
ACGTcount: A:0.30, C:0.14, G:0.30, T:0.26
Consensus pattern (27 bp):
TGCCACGGAGTTGTGGACTTAAAAGGT
Found at i:832587 original size:13 final size:13
Alignment explanation
Indices: 832569--832594 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
832559 GTGAATAGTG
832569 ATGTATCGATACA
1 ATGTATCGATACA
832582 ATGTATCGATACA
1 ATGTATCGATACA
832595 TGAATAGTGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:832698 original size:21 final size:22
Alignment explanation
Indices: 832667--832720 Score: 101
Period size: 21 Copynumber: 2.5 Consensus size: 22
832657 AGTAACAGCG
832667 ATGAACAGTGATGTATCGATAC
1 ATGAACAGTGATGTATCGATAC
832689 ATGAA-AGTGATGTATCGATAC
1 ATGAACAGTGATGTATCGATAC
832710 ATGAACAGTGA
1 ATGAACAGTGA
832721 AAAATAAGAT
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
21 21 0.68
22 10 0.32
ACGTcount: A:0.39, C:0.11, G:0.24, T:0.26
Consensus pattern (22 bp):
ATGAACAGTGATGTATCGATAC
Found at i:832881 original size:21 final size:21
Alignment explanation
Indices: 832841--832881 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
832831 GCCAACGTTG
*
832841 TGTATTGATACCAATAGTATA
1 TGTATTGATACCAACAGTATA
832862 TGTATTGATA-CAACACGTAT
1 TGTATTGATACCAACA-GTAT
832882 TTTTACTTAG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.37, C:0.12, G:0.15, T:0.37
Consensus pattern (21 bp):
TGTATTGATACCAACAGTATA
Found at i:833733 original size:13 final size:13
Alignment explanation
Indices: 833715--833740 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
833705 CAATTTTTTG
833715 TGTATCGATACAT
1 TGTATCGATACAT
833728 TGTATCGATACAT
1 TGTATCGATACAT
833741 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:836297 original size:13 final size:13
Alignment explanation
Indices: 836279--836317 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
836269 ATAATCACCC
*
836279 TGTATCGATACAG
1 TGTATCGATACAA
836292 TGTATCGATACAA
1 TGTATCGATACAA
836305 TGTATCGATACAA
1 TGTATCGATACAA
836318 AGAAAAATGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:836328 original size:20 final size:20
Alignment explanation
Indices: 836303--836381 Score: 77
Period size: 20 Copynumber: 3.7 Consensus size: 20
836293 GTATCGATAC
836303 AATGTATCGATACAAAGAAA
1 AATGTATCGATACAAAGAAA
*
836323 AATGTATCGATACATAGAATTTCCA
1 AATGTATCGATACAAAGAA-----A
* *
836348 GATGTATCGATACACAGAAA
1 AATGTATCGATACAAAGAAA
*
836368 CATGTATCGATACA
1 AATGTATCGATACA
836382 TTTTGGACAT
Statistics
Matches: 50, Mismatches: 4, Indels: 10
0.78 0.06 0.16
Matches are distributed among these distances:
20 32 0.64
25 18 0.36
ACGTcount: A:0.44, C:0.15, G:0.15, T:0.25
Consensus pattern (20 bp):
AATGTATCGATACAAAGAAA
Found at i:838417 original size:15 final size:15
Alignment explanation
Indices: 838397--838427 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
838387 ATTTCGTTTG
*
838397 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
838412 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
838427 G
1 G
838428 GACATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Found at i:840256 original size:21 final size:21
Alignment explanation
Indices: 840227--840271 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
840217 AAGTTTTCAT
*
840227 TTTTCTTAGCTAAC-TCATTA
1 TTTTCTTAGCCAACTTCATTA
*
840247 TTTTCATTAGCCAACTTCTTTA
1 TTTTC-TTAGCCAACTTCATTA
840269 TTT
1 TTT
840272 CAACTTGCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 8 0.38
22 8 0.38
ACGTcount: A:0.22, C:0.20, G:0.04, T:0.53
Consensus pattern (21 bp):
TTTTCTTAGCCAACTTCATTA
Found at i:842507 original size:13 final size:13
Alignment explanation
Indices: 842489--842514 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
842479 CAATTTTTTG
842489 TGTATCGATACAT
1 TGTATCGATACAT
842502 TGTATCGATACAT
1 TGTATCGATACAT
842515 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:851423 original size:71 final size:70
Alignment explanation
Indices: 851273--851433 Score: 214
Period size: 70 Copynumber: 2.3 Consensus size: 70
851263 ATTTTTTCGA
* *
851273 GGGGATACTTTAACCCTATTTTTAAACTTGTCAAGATTTAAATTTTATTTTTGCTTAAATTGTCA
1 GGGGATACTCTAACCCTATTTTTAAACTTGTCAAGATTTAAATCTTATTTTTGCTTAAATTGTCA
851338 TCAGC
66 TCAGC
** * * * *
851343 AAGGTTACTCTAACCCTATTTTTTAACTTGTTAAGATTTAAATCTTATTTTTTTCTTAAATTGTC
1 GGGGATACTCTAACCCTATTTTTAAACTTGTCAAGATTTAAATCTTA-TTTTTGCTTAAATTGTC
*
851408 ATCATC
65 ATCAGC
* *
851414 GGGGATACTCCAAGCCTATT
1 GGGGATACTCTAACCCTATT
851434 CTTCCGAAGA
Statistics
Matches: 76, Mismatches: 14, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
70 40 0.53
71 36 0.47
ACGTcount: A:0.28, C:0.16, G:0.12, T:0.44
Consensus pattern (70 bp):
GGGGATACTCTAACCCTATTTTTAAACTTGTCAAGATTTAAATCTTATTTTTGCTTAAATTGTCA
TCAGC
Found at i:853832 original size:79 final size:79
Alignment explanation
Indices: 853740--853965 Score: 263
Period size: 80 Copynumber: 2.8 Consensus size: 79
853730 AAGTAAAAAA
* *
853740 TGGGGTTGAAGTATCCCATAGATGAAAAATTCAATGTTTTGGAAGTAAAAATGGGGTTGGAGTAT
1 TGGGGTTGAAGTATCCCAAAGATGAAAAATTCAATGTTTTGGAAGTAAAAATGGGATTGGAGTAT
853805 CCTATCAAAGATAG
66 CCTATCAAAGATAG
* * *** * * *
853819 TGGGGTTGGAGTATCCCCAAAGATGAAAAATTTAGCATTTTGGAAGTAAAAATAGGTTTGTAGTA
1 TGGGGTTGAAGTAT-CCCAAAGATGAAAAATTCAATGTTTTGGAAGTAAAAATGGGATTGGAGTA
* * *
853884 TACTCTCAAAGATGG
65 TCCTATCAAAGATAG
* * * * * * *
853899 TGTGGTTGAAGTATCCCAGATATGAAAAATTCAATGTTTTAGAAGTATAAACGAGATTGGAGTAT
1 TGGGGTTGAAGTATCCCAAAGATGAAAAATTCAATGTTTTGGAAGTAAAAATGGGATTGGAGTAT
853964 CC
66 CC
853966 CCTGAAGATG
Statistics
Matches: 118, Mismatches: 28, Indels: 2
0.80 0.19 0.01
Matches are distributed among these distances:
79 52 0.44
80 66 0.56
ACGTcount: A:0.35, C:0.10, G:0.25, T:0.30
Consensus pattern (79 bp):
TGGGGTTGAAGTATCCCAAAGATGAAAAATTCAATGTTTTGGAAGTAAAAATGGGATTGGAGTAT
CCTATCAAAGATAG
Found at i:856549 original size:20 final size:21
Alignment explanation
Indices: 856501--856553 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 21
856491 ATAGCCTACT
856501 TGTATCAATACATTGCAAGCA
1 TGTATCAATACATTGCAAGCA
* ***
856522 TTTATCAATACATT-CACTTA
1 TGTATCAATACATTGCAAGCA
856542 TGTATCAATACA
1 TGTATCAATACA
856554 ATTCTTTCAA
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
20 14 0.52
21 13 0.48
ACGTcount: A:0.38, C:0.19, G:0.08, T:0.36
Consensus pattern (21 bp):
TGTATCAATACATTGCAAGCA
Found at i:859545 original size:69 final size:69
Alignment explanation
Indices: 859466--859617 Score: 166
Period size: 69 Copynumber: 2.2 Consensus size: 69
859456 AGAGAAATGG
* ** *
859466 GGTTGAAGTATCCCC-GATGATGGTAATTT-AGCAAAAAAAAAAATTAAATCTTAACAACTT-TA
1 GGTTGGAGTATCCCCAG-TGATGACAATTTAAGC-AAAAAAAAAATTAAATCTTAACAA-TTAAA
859528 AAAATAA
63 AAAATAA
* * * * *
859535 GGTTGGAGTATCCCCAGTGATGACAATTTAAGCAAAATAAGATTTAAATTTTGACAATTAAAAAA
1 GGTTGGAGTATCCCCAGTGATGACAATTTAAGCAAAAAAAAAATTAAATCTTAACAATTAAAAAA
*
859600 ATAG
66 ATAA
859604 GGTTGGAGTATCCC
1 GGTTGGAGTATCCC
859618 TTTGGAAGAA
Statistics
Matches: 70, Mismatches: 10, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
68 2 0.03
69 64 0.91
70 4 0.06
ACGTcount: A:0.43, C:0.12, G:0.17, T:0.28
Consensus pattern (69 bp):
GGTTGGAGTATCCCCAGTGATGACAATTTAAGCAAAAAAAAAATTAAATCTTAACAATTAAAAAA
ATAA
Found at i:862590 original size:157 final size:155
Alignment explanation
Indices: 862298--862871 Score: 566
Period size: 156 Copynumber: 3.7 Consensus size: 155
862288 CGTAGGGGAT
* * * * * *
862298 TTAAAAAGGAGTATAGATGGGATGAACCTATCCTACATACCCACCTTCGACGTAAAAGTGGACC-
1 TTAAAAAGGATTATAAATGGGATGAACCTATCCTAAATACCCACCTTCGACATAAAAATGAACCT
* * * * * ** *
862362 CGATGACAACCTAAGACTTGGTTCTAAAAAATTATGAAAATGCCGGTACGG-GTATACCTTTGAC
66 AG-TGACAACCTAGGACTCGATTTTAAAAAATTATGAAAATGCCCCTA-GGAG-ATACCTTCGAC
*
862426 TTGAAAGTATCTTGAT-CACCCTAAAGGAC
128 TTAAAAGTA-CTTGATAC-CCCTAAAGGAC
* * * * * * *
862455 TTAAAAAGGATTATAGATGGGATGAACCTATCCTAAATGCCCATCTTCGGCATAAAAGTGGACTT
1 TTAAAAAGGATTATAAATGGGATGAACCTATCCTAAATACCCACCTTCGACATAAAAATGAACCT
* * * * **
862520 AGTGACAACCTAGGACTTGATTTTGGAAAAGTTATGAAAATGCCCTTAGGAGATACCTTCGGTTT
66 AGTGACAACCTAGGACTCGATTTT-AAAAAATTATGAAAATGCCCCTAGGAGATACCTTCGACTT
* *
862585 AAAAGTACCTGATACCCCTAAAGGAG
130 AAAAGTACTTGATACCCCTAAAGGAC
* * * * *
862611 TTAGAAAA-GATTGTAAATGGGATTAGCCTATCCTAAATACCCACCTT-TAGCATAAAAACGAAC
1 TTA-AAAAGGATTATAAATGGGATGAACCTATCCTAAATACCCACCTTCGA-CATAAAAATGAAC
* * *
862674 CTAGTGACAACCTCGGACTCAATTTTGAAAAAATTATGAAAATGCCCCTA-GAGGATACCTTCAA
64 CTAGTGACAACCTAGGACTCGATTTT-AAAAAATTATGAAAATGCCCCTAGGA-GATACCTTCGA
* * *
862738 CTTAGAAGTGCTCGATACCCCTAAAGGAC
127 CTTAAAAGTACTTGATACCCCTAAAGGAC
* * * * * *
862767 TTATAATGGATTGTAAATGGGATGAACCTATCCTAAATACTCACATTCGATATAAAAATGAACCT
1 TTAAAAAGGATTATAAATGGGATGAACCTATCCTAAATACCCACCTTCGACATAAAAATGAACCT
* * *
862832 GGTGACAACCTAGGACTCGACTTTGAAAAATTATGAAAAT
66 AGTGACAACCTAGGACTCGATTTTAAAAAATTATGAAAAT
862872 ACCTTTAAAG
Statistics
Matches: 347, Mismatches: 61, Indels: 20
0.81 0.14 0.05
Matches are distributed among these distances:
155 19 0.05
156 207 0.60
157 100 0.29
158 21 0.06
ACGTcount: A:0.37, C:0.19, G:0.18, T:0.26
Consensus pattern (155 bp):
TTAAAAAGGATTATAAATGGGATGAACCTATCCTAAATACCCACCTTCGACATAAAAATGAACCT
AGTGACAACCTAGGACTCGATTTTAAAAAATTATGAAAATGCCCCTAGGAGATACCTTCGACTTA
AAAGTACTTGATACCCCTAAAGGAC
Found at i:863227 original size:140 final size:142
Alignment explanation
Indices: 863017--863289 Score: 349
Period size: 141 Copynumber: 1.9 Consensus size: 142
863007 AAGTTGTAAA
* **** * * *
863017 TTTTGAAAATCTCATTTTGTACCTTAATGGAGGTGTTGAAAAGATATGAAAAGTTTTGAAGATTT
1 TTTTAAAAATCTCATTTTGTACCTTAATGGAGGAACCGAAAAGATACGAAAAGTTTTAAAAATTT
* * * *
863082 CTATACCC-CTAC-AAAAAGCCATAGGAGTATT-AGAAATTTTGAAAAATTAAGATAATAATTTT
66 CTATACCCTCTACGAAAAA-CCAAAGAAATATTCA-AAATCTTGAAAAATTAAGATAATAA-TTT
863144 TATTTAATTTCTAAC
128 TATTTAATTTCTAAC
*
863159 TTTTAAAAAT-TCATTTTGTACTTTAATGGA-GAACCGAAAAGATACGAAAAGTTTTAAAAATTT
1 TTTTAAAAATCTCATTTTGTACCTTAATGGAGGAACCGAAAAGATACGAAAAGTTTTAAAAATTT
* *
863222 CTATACCCTTTACGAAAAATCAAAGAAATATTCAAAATCTTGAAAAATTAAGATAATAATTTTAT
66 CTATACCCTCTACGAAAAACCAAAGAAATATTCAAAATCTTGAAAAATTAAGATAATAATTTTAT
863287 TTA
131 TTA
863290 GTGATAAAGT
Statistics
Matches: 113, Mismatches: 15, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
140 43 0.38
141 55 0.49
142 15 0.13
ACGTcount: A:0.42, C:0.10, G:0.12, T:0.36
Consensus pattern (142 bp):
TTTTAAAAATCTCATTTTGTACCTTAATGGAGGAACCGAAAAGATACGAAAAGTTTTAAAAATTT
CTATACCCTCTACGAAAAACCAAAGAAATATTCAAAATCTTGAAAAATTAAGATAATAATTTTAT
TTAATTTCTAAC
Found at i:864535 original size:165 final size:164
Alignment explanation
Indices: 864364--864677 Score: 366
Period size: 165 Copynumber: 1.9 Consensus size: 164
864354 CCTGAAAACA
* * ** * * * * *
864364 TTTATGGGATAGAAAATTCGATTTTTTGGAAATAGGGGTATTTGAACGAAAAAATGAAAAACTCA
1 TTTATGGAATACAAAACACGATTTTTTGGAAATAAGAGAATTTCAA-GAAAAAATGAAAAACTAA
* * * **
864429 TGAAA-ATAAATGAA-TTTTTAAAAATAATTTAATT-TCAATTAAATGATGATATTTGATGAATT
65 TGAAATA-AAAGGAATTTTTTAAAAAGAATTT-ATTGTCAATTAAATAACAATATTTGATGAATT
*
864491 TTAAAAATTT-TGAACTAAGAAAAACCCTCGCAAAAGCC
128 TT-AAAATTTATAAACTAA-AAAAACCCTCGCAAAAGCC
* *
864529 TTTATGGAATACAAAACACGATTTTTTGGAAATAAGAGAATTTCAAGGAAAAATGAAAAATTAAT
1 TTTATGGAATACAAAACACGATTTTTTGGAAATAAGAGAATTTCAAGAAAAAATGAAAAACTAAT
* * * *
864594 GAAATAAAAGGAATTTTTTGAAACGGATTTATTGTGAATTAAATAACAATATTTGATGAATTTTA
66 GAAATAAAAGGAATTTTTTAAAAAGAATTTATTGTCAATTAAATAACAATATTTGATGAATTTTA
864659 AAATTTATAAACTAAAAAA
131 AAATTTATAAACTAAAAAA
864678 GTCCTTCCGA
Statistics
Matches: 124, Mismatches: 21, Indels: 9
0.81 0.14 0.06
Matches are distributed among these distances:
164 40 0.32
165 84 0.68
ACGTcount: A:0.47, C:0.06, G:0.14, T:0.33
Consensus pattern (164 bp):
TTTATGGAATACAAAACACGATTTTTTGGAAATAAGAGAATTTCAAGAAAAAATGAAAAACTAAT
GAAATAAAAGGAATTTTTTAAAAAGAATTTATTGTCAATTAAATAACAATATTTGATGAATTTTA
AAATTTATAAACTAAAAAAACCCTCGCAAAAGCC
Found at i:866443 original size:20 final size:20
Alignment explanation
Indices: 866418--866474 Score: 78
Period size: 20 Copynumber: 2.9 Consensus size: 20
866408 ATAAGGTCTA
** *
866418 GTATCGATACATTCGCTTAT
1 GTATCGATACATTAACTCAT
866438 GTATCGATACATTAACTCAT
1 GTATCGATACATTAACTCAT
*
866458 GTATCAATACATTAACT
1 GTATCGATACATTAACT
866475 TGTTGTATTG
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.33, C:0.19, G:0.11, T:0.37
Consensus pattern (20 bp):
GTATCGATACATTAACTCAT
Found at i:867243 original size:89 final size:87
Alignment explanation
Indices: 866938--867423 Score: 351
Period size: 89 Copynumber: 5.5 Consensus size: 87
866928 GAAGATCGGG
* * * *
866938 GTTGGAGTATCCCTTCAGAATAGTTA-GGATATAGTTTTCCTAAGGATAAAACTTATATGAAGGA
1 GTTGGAGTATCCCTT-GGAATAG-TAGGGATAGAGTTTCCCTAAGGATAAAA-TTATATGAAAGA
* **
867002 AAATTTGAA-ATTTTGTTAGAACGGG
63 AAATTTGAATTTTTTGTTAGAAC-AA
* * * * * * *
867027 GTTGGGGTATCCCTTGGAACAGTAGGGATAGAGTTTCTCC-AATGATAAATTTGTA-CAATGGAA
1 GTTGGAGTATCCCTTGGAATAGTAGGGATAGAGTTTC-CCTAAGGATAAAATTATATGAA-AGAA
**
867090 AATTTGTGTTTTTTTGTTAGAACAA
64 AATTTG-AATTTTTTGTTAGAACAA
* * * * *
867115 GATTGGTGTATCCCCTTGAAATAATGGGGATAGAGTTTCCCTAAGGATAAAATAATATGAAAGAA
1 G-TTGGAGTAT-CCCTTGGAATAGTAGGGATAGAGTTTCCCTAAGGATAAAATTATATGAAAGAA
*
867180 AATTTGAATTTTTTATTAGAACAAA
64 AATTTGAATTTTTTGTTAGAAC-AA
* * * *
867205 GTTGGAATATCCCTTTGGCATAGTAGGGATGGAGTTTCCCTAAGGATAAAATTACATGAAAGAAA
1 GTTGGAGTATCCC-TTGGAATAGTAGGGATAGAGTTTCCCTAAGGATAAAATTATATGAAAGAAA
* **
867270 ATTTG-A-TTTTTGTTGGAATGGA
65 ATTTGAATTTTTTGTTAGAA-CAA
* * * * *
867292 GTTTGAGTATCGCCTAGGAATAG-CGGGGT-GTAGTTT-CCTCAAGGATAAAATTATATGAAGGA
1 GTTGGAGTATC-CCTTGGAATAGTAGGGATAG-AGTTTCCCT-AAGGATAAAATTATATGAAAGA
* * * *
867354 GAATTTGATTTTTTTTGTTAGAATAG
63 AAATTTGA-ATTTTTTGTTAGAACAA
*** * * *
867380 GATTGGAGTATCTCCTCAAAATAATGGGGATGGAGTTTCCCTAA
1 G-TTGGAGTATC-CCTTGGAATAGTAGGGATAGAGTTTCCCTAA
867424 AATAAAAAAT
Statistics
Matches: 312, Mismatches: 63, Indels: 43
0.75 0.15 0.10
Matches are distributed among these distances:
85 4 0.01
86 37 0.12
87 43 0.14
88 31 0.10
89 134 0.43
90 57 0.18
91 6 0.02
ACGTcount: A:0.33, C:0.10, G:0.23, T:0.34
Consensus pattern (87 bp):
GTTGGAGTATCCCTTGGAATAGTAGGGATAGAGTTTCCCTAAGGATAAAATTATATGAAAGAAAA
TTTGAATTTTTTGTTAGAACAA
Found at i:867974 original size:20 final size:20
Alignment explanation
Indices: 867949--868009 Score: 77
Period size: 20 Copynumber: 3.0 Consensus size: 20
867939 TATTGGTACA
*
867949 ATAAGTGAATGTATCGATAC
1 ATAAGTGAATGTATCAATAC
867969 ATAAGTGAATGTATCAATAC
1 ATAAGTGAATGTATCAATAC
*** *
867989 ATGTCTAAATGTATCAATAC
1 ATAAGTGAATGTATCAATAC
868009 A
1 A
868010 AGACCATTAT
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.43, C:0.11, G:0.15, T:0.31
Consensus pattern (20 bp):
ATAAGTGAATGTATCAATAC
Found at i:874748 original size:140 final size:140
Alignment explanation
Indices: 874578--875129 Score: 472
Period size: 140 Copynumber: 3.8 Consensus size: 140
874568 GAAAAAAAAG
* * * *
874578 AAAAAGTGCCTTGCTCTTTGAGGA-TCAAAAAAGATAAAGGGTGCCACTAGTTTGTGTGGGCTTT
1 AAAAAATGTCTTGCTCTTTAAGGACT-AAAAAAGATAAAGGGTGCCACTAGCTTGTGTGGGCTTT
* * *
874642 AAAGAAAAAGAAAAGACGT-CTAACTCTTTAAGGACTGAAAAAGCTAAAGGGTGCCACCAGCTTG
65 AAAGAAAAAGAAAAGGCATCCT-ACTCTTTAAGGACTGAAAAAGCTAAAAGGTGCCACCAGCTTG
874706 TATGGGCTTCAA
129 TATGGGCTTCAA
* * * * * *
874718 AAAAAATGTCTTGCTCTTTAAGGACTAAAAAAGATAAAGGATGCTACCAGCTTATGTAGGCTTTC
1 AAAAAATGTCTTGCTCTTTAAGGACTAAAAAAGATAAAGGGTGCCACTAGCTTGTGTGGGCTTTA
* * * *
874783 TAGAAAAATAAAAGGTATCCTACTCTTTAAGGACTGCAAAAGCTAAAAGGTGCCACCAGCTTGTA
66 AAGAAAAAGAAAAGGCATCCTACTCTTTAAGGACTGAAAAAGCTAAAAGGTGCCACCAGCTTGTA
* *
874848 TAGGCTTTAA
131 TGGGCTTCAA
* * * *
874858 AGAAAAA-GAAAAAACCTCTTAG-TCTTTAAGGACTGAAAAAGGTAAATGGTGCTACTAGCTTGT
1 A-AAAAATG--------TCTT-GCTCTTTAAGGACTAAAAAAGATAAAGGGTGCCACTAGCTTGT
* * * ** * * * * *
874921 TTGGGATTTAAAGAAAAAGAAAATGTGTCTTGCTCTTTAAGGACTAAAAAAGATAAAGGGTGCCA
56 GTGGGCTTTAAAGAAAAAGAAAAGGCATCCTACTCTTTAAGGACTGAAAAAGCTAAAAGGTGCCA
* * * *
874986 CTAGCTTATGTGGGCTTTAAAGAA
121 CCAGCTTGTATGGGC-TT---CAA
* * * *
875010 AAAGAAAAGGCATCTGCTTTTTGAGGACTAAAAAAGATAAAGGGTGCCACTAGCTTGTGT-GGCT
1 AAA-AAATGTC-T-TGCTCTTTAAGGACTAAAAAAGATAAAGGGTGCCACTAGCTTGTGTGGGC-
*
875074 TTTGAAA-AAAAA-AAAAGGCATCCTACTTTTTGAA-GACTGAAAAAGCTAAAAGGTGC
62 TTT-AAAGAAAAAGAAAAGGCATCCTACTCTTT-AAGGACTGAAAAAGCTAAAAGGTGC
875130 TAGTAGCTTG
Statistics
Matches: 326, Mismatches: 62, Indels: 42
0.76 0.14 0.10
Matches are distributed among these distances:
140 118 0.36
141 8 0.02
145 1 0.00
146 36 0.11
147 47 0.14
148 104 0.32
149 3 0.01
151 2 0.01
152 6 0.02
153 1 0.00
ACGTcount: A:0.38, C:0.14, G:0.22, T:0.26
Consensus pattern (140 bp):
AAAAAATGTCTTGCTCTTTAAGGACTAAAAAAGATAAAGGGTGCCACTAGCTTGTGTGGGCTTTA
AAGAAAAAGAAAAGGCATCCTACTCTTTAAGGACTGAAAAAGCTAAAAGGTGCCACCAGCTTGTA
TGGGCTTCAA
Found at i:875062 original size:73 final size:73
Alignment explanation
Indices: 874543--875171 Score: 498
Period size: 74 Copynumber: 8.6 Consensus size: 73
874533 TGAGGTAAGT
* * * * *
874543 GGGTACCACCAGCTTATGT-GGCTTTGAAA-AAAAAGAAAAAGTGCCT-TGCTCTTTGAGGA-TC
1 GGGTGCCACTAGCTTGTGTGGGCTTT-AAAGAAAAAG-AAAAG-GCATCTGCTCTTTAAGGACT-
874604 AAAAAAGATAAA
62 AAAAAAGATAAA
* * * * *
874616 GGGTGCCACTAGTTTGTGTGGGCTTTAAAGAAAAAGAAAAGACGTCTAACTCTTTAAGGACTGAA
1 GGGTGCCACTAGCTTGTGTGGGCTTTAAAGAAAAAGAAAAGGCATCT-GCTCTTTAAGGACTAAA
*
874681 AAAGCTAAA
65 AAAGATAAA
* * * * *
874690 GGGTGCCACCAGCTTGTATGGGC-TT---CAAAAA-AAATGTC-T-TGCTCTTTAAGGACTAAAA
1 GGGTGCCACTAGCTTGTGTGGGCTTTAAAGAAAAAGAAAAGGCATCTGCTCTTTAAGGACTAAAA
874748 AAGATAAA
66 AAGATAAA
* * * * * ** * * * **
874756 GGATGCTACCAGCTTATGTAGGCTTTCTAGAAAAATAAAAGGTATCCTACTCTTTAAGGACTGCA
1 GGGTGCCACTAGCTTGTGTGGGCTTTAAAGAAAAAGAAAAGGCAT-CTGCTCTTTAAGGACTAAA
*
874821 AAAGCTAAA
65 AAAGATAAA
* * * * ** * *
874830 AGGTGCCACCAGCTTGTATAGGCTTTAAAGAAAAAGAAAAAACCTCTTAG-TCTTTAAGGACTGA
1 GGGTGCCACTAGCTTGTGTGGGCTTTAAAGAAAAAGAAAAGGCATC-T-GCTCTTTAAGGACTAA
*
874894 AAAAGGTAAA
64 AAAAGATAAA
* * * * * **
874904 TGGTGCTACTAGCTTGTTTGGGATTTAAAGAAAAAGAAAATGTGTCTTGCTCTTTAAGGACTAAA
1 GGGTGCCACTAGCTTGTGTGGGCTTTAAAGAAAAAGAAAAGGCATC-TGCTCTTTAAGGACTAAA
874969 AAAGATAAA
65 AAAGATAAA
* * *
874978 GGGTGCCACTAGCTTATGTGGGCTTTAAAGAAAAAGAAAAGGCATCTGCTTTTTGAGGACTAAAA
1 GGGTGCCACTAGCTTGTGTGGGCTTTAAAGAAAAAGAAAAGGCATCTGCTCTTTAAGGACTAAAA
875043 AAGATAAA
66 AAGATAAA
* *
875051 GGGTGCCACTAGCTTGTGT-GGCTTTTGAAA-AAAAA-AAAAGGCATCCTACTTTTTGAA-GACT
1 GGGTGCCACTAGCTTGTGTGGGC-TTT-AAAGAAAAAGAAAAGGCAT-CTGCTCTTT-AAGGACT
* *
875112 GAAAAAGCTAAA
62 AAAAAAGATAAA
* * * * * *
875124 AGGTGCTAGTAGCTTGTGTGGGACTATGAAGAAAAAGAAAAGACATCT
1 GGGTGCCACTAGCTTGTGTGGG-CTTTAAAGAAAAAGAAAAGGCATCT
875172 TACTCTTTGA
Statistics
Matches: 452, Mismatches: 80, Indels: 47
0.78 0.14 0.08
Matches are distributed among these distances:
66 41 0.09
67 3 0.01
68 1 0.00
69 5 0.01
70 10 0.02
71 4 0.01
72 15 0.03
73 119 0.26
74 244 0.54
75 10 0.02
ACGTcount: A:0.38, C:0.14, G:0.22, T:0.25
Consensus pattern (73 bp):
GGGTGCCACTAGCTTGTGTGGGCTTTAAAGAAAAAGAAAAGGCATCTGCTCTTTAAGGACTAAAA
AAGATAAA
Found at i:877685 original size:13 final size:13
Alignment explanation
Indices: 877645--877695 Score: 51
Period size: 13 Copynumber: 4.4 Consensus size: 13
877635 CTGTTAGAAG
877645 CAATGTATCGATA
1 CAATGTATCGATA
877658 CAA--T-TC-AT-
1 CAATGTATCGATA
877666 C-ATGTATCGATA
1 CAATGTATCGATA
877678 CAATGTATCGATA
1 CAATGTATCGATA
*
877691 TAATG
1 CAATG
877696 CACCATGTAT
Statistics
Matches: 31, Mismatches: 1, Indels: 12
0.70 0.02 0.27
Matches are distributed among these distances:
7 1 0.03
8 1 0.03
9 3 0.10
10 4 0.13
11 3 0.10
12 1 0.03
13 18 0.58
ACGTcount: A:0.37, C:0.16, G:0.14, T:0.33
Consensus pattern (13 bp):
CAATGTATCGATA
Found at i:877687 original size:33 final size:33
Alignment explanation
Indices: 877645--877713 Score: 111
Period size: 33 Copynumber: 2.1 Consensus size: 33
877635 CTGTTAGAAG
* *
877645 CAATGTATCGATACAATTCATCATGTATCGATA
1 CAATGTATCGATACAATGCACCATGTATCGATA
*
877678 CAATGTATCGATATAATGCACCATGTATCGATA
1 CAATGTATCGATACAATGCACCATGTATCGATA
877711 CAA
1 CAA
877714 ACAGTGGTAG
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.38, C:0.19, G:0.13, T:0.30
Consensus pattern (33 bp):
CAATGTATCGATACAATGCACCATGTATCGATA
Found at i:877797 original size:19 final size:19
Alignment explanation
Indices: 877742--877797 Score: 67
Period size: 19 Copynumber: 2.9 Consensus size: 19
877732 CTGCCAGTTT
**
877742 CATGTATCGATACAATAGTC
1 CATGTATCGATACAAT-GAA
* *
877762 CATGTATCAATAAAATGAA
1 CATGTATCGATACAATGAA
877781 CATGTATCGATACAATG
1 CATGTATCGATACAATG
877798 TATCGATACA
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
19 16 0.53
20 14 0.47
ACGTcount: A:0.41, C:0.16, G:0.14, T:0.29
Consensus pattern (19 bp):
CATGTATCGATACAATGAA
Found at i:877800 original size:13 final size:13
Alignment explanation
Indices: 877782--877808 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
877772 TAAAATGAAC
877782 ATGTATCGATACA
1 ATGTATCGATACA
877795 ATGTATCGATACA
1 ATGTATCGATACA
877808 A
1 A
877809 AGCATAATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:882429 original size:13 final size:13
Alignment explanation
Indices: 882411--882436 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
882401 TTGTGTGATG
882411 CTTGTTCTAAATT
1 CTTGTTCTAAATT
882424 CTTGTTCTAAATT
1 CTTGTTCTAAATT
882437 TTCTTTATAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.15, G:0.08, T:0.54
Consensus pattern (13 bp):
CTTGTTCTAAATT
Found at i:886487 original size:20 final size:20
Alignment explanation
Indices: 886462--886511 Score: 75
Period size: 20 Copynumber: 2.5 Consensus size: 20
886452 GTTAGAAGCA
*
886462 ATGTATCGATACAAT-TCATC
1 ATGTATCGATACAATGT-ACC
886482 ATGTATCGATACAATGTACC
1 ATGTATCGATACAATGTACC
886502 ATGTATCGAT
1 ATGTATCGAT
886512 GCAAACAGTG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
20 27 0.96
21 1 0.04
ACGTcount: A:0.34, C:0.18, G:0.14, T:0.34
Consensus pattern (20 bp):
ATGTATCGATACAATGTACC
Found at i:886583 original size:13 final size:13
Alignment explanation
Indices: 886565--886591 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
886555 ACAATTGTCC
886565 ATGTATCGATACA
1 ATGTATCGATACA
886578 ATGTATCGATACA
1 ATGTATCGATACA
886591 A
1 A
886592 AGCATAATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:889345 original size:190 final size:189
Alignment explanation
Indices: 889020--889402 Score: 608
Period size: 190 Copynumber: 2.0 Consensus size: 189
889010 AAATGTCTTT
* *
889020 TCCTTTAACTTTAATAAAAAAAGTTTTGTCAACATTATCGCTATTAAAACCTTTTTCAATCAAGA
1 TCCTTTAACTTTAATAAAAAAAGTTTTGTCAACATTACCGATATTAAAACCTTTTTCAATCAAGA
* *
889085 ATTTCAAAAGTCTTTCATACCAAGCTCTAGGAGCTTGCTTTAAACCATATAAGGCCTTTGAAAAT
66 ATTTCAAAAGTCCTTCATACCAAGCTCTAGAAGCTTGCTTTAAACCATATAAGGCCTTTGAAAAT
* ** *
889150 TTGAAAACATGATTAGGAA-AAAGAGGATTTTTAAAATTGGGAGGTTGTTCAACATAAACC
131 TTGAAAACATGATTAGGAATAAA-A-GATTTTCAAAATCAGGAGGTTGTTCAAAATAAACC
*
889210 TCCTTTAACTTTAATAAAAAGAA-TTTTGTCAACATTACCTATATTAAAACCTTTTTCAATCAAG
1 TCCTTTAACTTTAATAAAAA-AAGTTTTGTCAACATTACCGATATTAAAACCTTTTTCAATCAAG
** * *
889274 AATTTTGAAAGTCCTTCATACCAAGCTCTAGAAGCTTGCTTTAAACCGTATAAGGCCTTTGAAAG
65 AATTTCAAAAGTCCTTCATACCAAGCTCTAGAAGCTTGCTTTAAACCATATAAGGCCTTTGAAAA
889339 TTTGAAAACATGATTAGGAATAAAAGATTTTCAAAATCAGGAGGTTGTTCAAAATAAACC
130 TTTGAAAACATGATTAGGAATAAAAGATTTTCAAAATCAGGAGGTTGTTCAAAATAAACC
889399 TCCT
1 TCCT
889403 CATTAATAAA
Statistics
Matches: 178, Mismatches: 13, Indels: 5
0.91 0.07 0.03
Matches are distributed among these distances:
189 35 0.20
190 138 0.78
191 5 0.03
ACGTcount: A:0.38, C:0.16, G:0.13, T:0.33
Consensus pattern (189 bp):
TCCTTTAACTTTAATAAAAAAAGTTTTGTCAACATTACCGATATTAAAACCTTTTTCAATCAAGA
ATTTCAAAAGTCCTTCATACCAAGCTCTAGAAGCTTGCTTTAAACCATATAAGGCCTTTGAAAAT
TTGAAAACATGATTAGGAATAAAAGATTTTCAAAATCAGGAGGTTGTTCAAAATAAACC
Found at i:899245 original size:2 final size:2
Alignment explanation
Indices: 899238--899264 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
899228 AGAAAAATTG
899238 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
899265 ACTCAAAACT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:900289 original size:65 final size:65
Alignment explanation
Indices: 900211--900837 Score: 319
Period size: 65 Copynumber: 9.6 Consensus size: 65
900201 TGAAACTATG
* * * *
900211 TGAACCGACTTTGGTGACTAGGGTAGAACCTAAGT-AAAAAAAGAGTTAGCCGAGACGAAACCAT
1 TGAACCAACTTTGGTGACTAGGGTAGAACCTAAGTCAAAAAAAG-GTTGGCCGGGACAAAACCAT
900275 A
65 A
* ** * ** *
900276 TGAACCAAATTTGGATGACTAGAAT-GAAACCTAAGTCGAAAAAAGGTTGGTTGGGACAAAACTA
1 TGAACCAACTTTGG-TGACTAGGGTAG-AACCTAAGTCAAAAAAAGGTTGGCCGGGACAAAACCA
900340 TA
64 TA
*** * * * * * **
900342 TGAACCAACTAAAAGTGATTA-GATCAGACCCTATGTCGAAAAAAGGTTGGTTGGGACAAAACCA
1 TGAACCAACT-TTGGTGACTAGGGT-AGAACCTAAGTCAAAAAAAGGTTGGCCGGGACAAAACCA
900406 TA
64 TA
** ** * * * * * *
900408 CAAACCAACTAAGGGTGA-TAGGGCAAAACTTAAGTCAAAAAAAGGTTAGCCGAGATAAAACCAT
1 TGAACCAACT-TTGGTGACTAGGGTAGAACCTAAGTCAAAAAAAGGTTGGCCGGGACAAAACCAT
900472 A
65 A
* ** ** * * * *
900473 TGAACCAACTTTGGTGACTA-GGTCGAAACCTAAGTTGAAAAGGGGTTAGTCGGGACAAAATCAA
1 TGAACCAACTTTGGTGACTAGGGTAG-AACCTAAGTCAAAAAAAGGTTGGCCGGGACAAAACCAT
900537 A
65 A
** * * * *
900538 TGAACCAACTAAAGGTGA-TCAGGGTAGAACCTAA-TTAAAAAAAAGTTGGCTGGGAAAAAACCA
1 TGAACCAACT-TTGGTGACT-AGGGTAGAACCTAAGTCAAAAAAAGGTTGGCCGGGACAAAACCA
900601 TA
64 TA
* * ** * ** ** *
900603 TGAACTAACTTTAGTGACTAGGGCGGAACCTAAGTCAAAAAAAGGTTCGCTAGGATGAAA-TATA
1 TGAACCAACTTTGGTGACTAGGGTAGAACCTAAGTCAAAAAAAGGTTGGCCGGGACAAAACCATA
* * * * * * * ** **
900667 TGAATCAACTATAGGTGAC-CGAG-ATGAAACCTAATTCAAAAAAGGGTTAG--TTGATGAAACC
1 TGAACCAACT-TTGGTGACTAGGGTA-G-AACCTAAGTCAAAAAAAGGTTGGCCGGGACAAAACC
900728 ATA
63 ATA
* * * * ** *
900731 CGAACTAATTTTGGTGA-TCAGGGTA-AGACCTAAGTCAAAAAGAGGTTGGCTAGGACAAAACTA
1 TGAACCAACTTTGGTGACT-AGGGTAGA-ACCTAAGTCAAAAAAAGGTTGGCCGGGACAAAACCA
900794 TA
64 TA
** * *
900796 TGAACCAACTAAGGATGACCAGGGTAGGACCTAAGTCAAAAA
1 TGAACCAACTTTGG-TGACTAGGGTAGAACCTAAGTCAAAAA
900838 GTGATGAATA
Statistics
Matches: 420, Mismatches: 115, Indels: 53
0.71 0.20 0.09
Matches are distributed among these distances:
62 1 0.00
63 31 0.07
64 48 0.11
65 194 0.46
66 133 0.32
67 13 0.03
ACGTcount: A:0.42, C:0.15, G:0.23, T:0.20
Consensus pattern (65 bp):
TGAACCAACTTTGGTGACTAGGGTAGAACCTAAGTCAAAAAAAGGTTGGCCGGGACAAAACCATA
Found at i:900716 original size:195 final size:194
Alignment explanation
Indices: 900223--900717 Score: 443
Period size: 195 Copynumber: 2.5 Consensus size: 194
900213 AACCGACTTT
* * * ** *
900223 GGTGACTAGGGTAGAACCTAAGT-AAAAAAAGAGTTAGCCGAGACGAAACCATATGAACCAAATT
1 GGTGA-TAGGGCAAAACCTAAGTCAAAAAAAG-GTTAGCAGAGATAAAACCATATGAACCAACTT
* * * * * *
900287 TGGATGACTAGAATGAAACCTAAGTCGAAAAAA-GGTTGGTTGGGACAAAACTATATGAACCAAC
64 AGG-TGACGAG-ATGAAACCTAATTC-AAAAAAGGGTTAGTCGGGACAAAACTAAATGAACCAAC
* * * * * *
900351 TAAAAGTGATTAGATCAGACCCTATGTCGAAAAAAGGTTGGTTGGGACAAAACCATACAAACCAA
126 TAAAAGTGATCAGATCAGAACCTATGTCAAAAAAAAGTTGGCTGGGAAAAAACCATACAAACCAA
900416 CTAA
191 CTAA
* * *
900420 GGGTGATAGGGCAAAACTTAAGTCAAAAAAAGGTTAGCCGAGATAAAACCATATGAACCAACTTT
1 -GGTGATAGGGCAAAACCTAAGTCAAAAAAAGGTTAGCAGAGATAAAACCATATGAACCAACTTA
* * * *
900485 GGTGACTAGGTCGAAACCTAAGTT-GAAAAGGGGTTAGTCGGGACAAAA-TCAAATGAACCAACT
65 GGTGACGAGAT-GAAACCTAA-TTCAAAAAAGGGTTAGTCGGGACAAAACT-AAATGAACCAACT
* * ** *
900548 AAAGGTGATCAGGGT-AGAACCTAAT-T-AAAAAAAAGTTGGCTGGGAAAAAACCATATGAACTA
127 AAAAGTGATCA-GATCAGAACCT-ATGTCAAAAAAAAGTTGGCTGGGAAAAAACCATACAAACCA
*
900610 ACTTTA
190 AC-TAA
** * * * *
900616 -GTGACTAGGGCGGAACCTAAGTCAAAAAAAGGTTCGCTAG-GATGAAA-TATATGAATCAACTA
1 GGTGA-TAGGGCAAAACCTAAGTCAAAAAAAGGTTAGC-AGAGATAAAACCATATGAACCAACT-
900678 TAGGTGACCGAGATGAAACCTAATTCAAAAAAGGGTTAGT
63 TAGGTGA-CGAGATGAAACCTAATTCAAAAAAGGGTTAGT
900718 TGATGAAACC
Statistics
Matches: 246, Mismatches: 38, Indels: 29
0.79 0.12 0.09
Matches are distributed among these distances:
194 18 0.07
195 98 0.40
196 66 0.27
197 51 0.21
198 13 0.05
ACGTcount: A:0.42, C:0.15, G:0.23, T:0.20
Consensus pattern (194 bp):
GGTGATAGGGCAAAACCTAAGTCAAAAAAAGGTTAGCAGAGATAAAACCATATGAACCAACTTAG
GTGACGAGATGAAACCTAATTCAAAAAAGGGTTAGTCGGGACAAAACTAAATGAACCAACTAAAA
GTGATCAGATCAGAACCTATGTCAAAAAAAAGTTGGCTGGGAAAAAACCATACAAACCAACTAA
Found at i:905184 original size:9 final size:9
Alignment explanation
Indices: 905167--905202 Score: 54
Period size: 9 Copynumber: 4.0 Consensus size: 9
905157 TCTACCATCA
*
905167 AAGACGATG
1 AAGATGATG
905176 AAGATGATG
1 AAGATGATG
905185 AAGATGATG
1 AAGATGATG
*
905194 ATGATGATG
1 AAGATGATG
905203 GTGACTCAGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.42, C:0.03, G:0.33, T:0.22
Consensus pattern (9 bp):
AAGATGATG
Found at i:909544 original size:8 final size:8
Alignment explanation
Indices: 909531--909556 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
909521 ATTTGATTAA
909531 ATTTTGTG
1 ATTTTGTG
909539 ATTTTGTG
1 ATTTTGTG
909547 ATTTTGTG
1 ATTTTGTG
909555 AT
1 AT
909557 GAATGATGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.15, C:0.00, G:0.23, T:0.62
Consensus pattern (8 bp):
ATTTTGTG
Found at i:910236 original size:20 final size:21
Alignment explanation
Indices: 910204--910255 Score: 79
Period size: 20 Copynumber: 2.4 Consensus size: 21
910194 CTCCTAGGCA
910204 GCACCCACCAGGTCGCGACC-G
1 GCACCC-CCAGGTCGCGACCGG
910225 GCACCCCCAGGTCGCGACCGG
1 GCACCCCCAGGTCGCGACCGG
910246 GCAGCCCCCA
1 GCA-CCCCCA
910256 CACTAGCAGC
Statistics
Matches: 29, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
20 13 0.45
21 10 0.34
22 6 0.21
ACGTcount: A:0.17, C:0.50, G:0.29, T:0.04
Consensus pattern (21 bp):
GCACCCCCAGGTCGCGACCGG
Found at i:912237 original size:13 final size:13
Alignment explanation
Indices: 912219--912243 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
912209 ATGTTGCACA
912219 GTATTGATACATT
1 GTATTGATACATT
912232 GTATTGATACAT
1 GTATTGATACAT
912244 GACCAAATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.08, G:0.16, T:0.44
Consensus pattern (13 bp):
GTATTGATACATT
Found at i:912260 original size:20 final size:21
Alignment explanation
Indices: 912231--912283 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 21
912221 ATTGATACAT
* **
912231 TGTATTGATACATGACCAA-A
1 TGTATCGATACATGAAAAAGA
*
912251 TGTATCGATACTTGAAAAAGA
1 TGTATCGATACATGAAAAAGA
912272 TGTATCGATACA
1 TGTATCGATACA
912284 GGTCATTGGC
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
20 15 0.56
21 12 0.44
ACGTcount: A:0.40, C:0.13, G:0.17, T:0.30
Consensus pattern (21 bp):
TGTATCGATACATGAAAAAGA
Found at i:912378 original size:33 final size:32
Alignment explanation
Indices: 912315--912382 Score: 91
Period size: 33 Copynumber: 2.1 Consensus size: 32
912305 GTAACCAAAC
** *
912315 TTGTATCGATACACACAGTATGTATTGATACA
1 TTGTATCGATACACACAAAATGTATCGATACA
*
912347 TTGTATCGATACACCATAAAATGTATCGATACA
1 TTGTATCGATACA-CACAAAATGTATCGATACA
912380 TTG
1 TTG
912383 GCTTATAACG
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
32 13 0.42
33 18 0.58
ACGTcount: A:0.35, C:0.16, G:0.15, T:0.34
Consensus pattern (32 bp):
TTGTATCGATACACACAAAATGTATCGATACA
Found at i:915737 original size:10 final size:10
Alignment explanation
Indices: 915707--915740 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
915697 TGAGTATTGA
*
915707 TTTAAAAATA
1 TTTAAAAATC
915717 TTTCAAAAATC
1 TTT-AAAAATC
915728 TTTAAAAATC
1 TTTAAAAATC
915738 TTT
1 TTT
915741 TTCCTAATGG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
10 13 0.59
11 9 0.41
ACGTcount: A:0.47, C:0.09, G:0.00, T:0.44
Consensus pattern (10 bp):
TTTAAAAATC
Done.