Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold286
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1428881
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.33
Warning! 499 characters in sequence are not A, C, G, or T
File 9 of 9
Found at i:1261346 original size:293 final size:293
Alignment explanation
Indices: 1260819--1261349 Score: 845
Period size: 293 Copynumber: 1.8 Consensus size: 293
1260809 GTTGCAAGAA
1260819 AAGCTTTTCTTCCTACCATTTTTGATAGAATCAAAGTTTGTCTCTCAAATAATACAAACATGAAT
1 AAGCTTTTCTTCCTACCATTTTTGATAGAATCAAAGTTTGTCTCTCAAATAATACAAACATGAAT
*
1260884 ACTCACACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATAC
66 ACTCACACTAATCCCCATTCATTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATAC
* **
1260949 ACGATATTGATGCTTTGGTTTTGCAACAAAAGCTTTCTTCCCACAAATTGTTGTAAAGTCTAAGT
131 ACGATATTGATACTTTGGTTTCACAACAAAAGCTTTCTTCCCACAAATTGTTGTAAAGTCTAAGT
1261014 TCGTGCCTCAAATCAGACAAACATGGATTCTAGTAATGATCTTTATCCGAATTGTGATTAGGGAC
196 TCGTGCCTCAAATCAGACAAACATGGATTCTAGTAATGATCTTTATCCGAATTGTGATTAGGGAC
1261079 ATTCTCTTCGTTGACGCCTTGGTACCGTAAGTT
261 ATTCTCTTCGTTGACGCCTTGGTACCGTAAGTT
* * * * *
1261112 AAGCTTTTTTTTCC-ACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAT-ATGATAAACATTA
1 AAGC-TTTTCTTCCTACCATTTTTGATAGAATCAAAGTTTGTCTCTCAAATAAT-ACAAACATGA
* *
1261175 ATACTCATACTAATCCCCATTCATTTCAGGATTAGGCACCATAAATGA-AGTCTTCTCATTAGGA
64 ATACTCACACTAATCCCCATTCATTTCAGGATTAGGCACCATAAA-CATAGTCTTCTCATTAGGA
* * ** *
1261239 TACAGGATATTGATACTTTGGTTTCACAACAAAGGCTTTCTTCCCATGAATTGTTGTAAAGTTTA
128 TACACGATATTGATACTTTGGTTTCACAACAAAAGCTTTCTTCCCACAAATTGTTGTAAAGTCTA
*
1261304 AGTTCGTGCCTCAAATGAGACAAAC-TCGGATTCTAGTAATGATCTT
193 AGTTCGTGCCTCAAATCAGACAAACAT-GGATTCTAGTAATGATCTT
1261350 CATTCTTTTT
Statistics
Matches: 217, Mismatches: 17, Indels: 8
0.90 0.07 0.03
Matches are distributed among these distances:
292 3 0.01
293 205 0.94
294 9 0.04
ACGTcount: A:0.30, C:0.20, G:0.15, T:0.35
Consensus pattern (293 bp):
AAGCTTTTCTTCCTACCATTTTTGATAGAATCAAAGTTTGTCTCTCAAATAATACAAACATGAAT
ACTCACACTAATCCCCATTCATTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATAC
ACGATATTGATACTTTGGTTTCACAACAAAAGCTTTCTTCCCACAAATTGTTGTAAAGTCTAAGT
TCGTGCCTCAAATCAGACAAACATGGATTCTAGTAATGATCTTTATCCGAATTGTGATTAGGGAC
ATTCTCTTCGTTGACGCCTTGGTACCGTAAGTT
Found at i:1261683 original size:445 final size:448
Alignment explanation
Indices: 1261130--1262815 Score: 1694
Period size: 445 Copynumber: 3.6 Consensus size: 448
1261120 TTTTCCACCG
* ** * *
1261130 TTTTTGATAGAATCAAAGTTTGTCTCTTAAATATGATAAACATTAATACTCATACTAATCCCCAT
1 TTTTCGATAGAATCAAAACTTGTCTCTTAAATAAGATAAACATGAATACTCATACTAATCCCCAT
* * * *
1261195 TCATTTCAGGATTAGGCACCATAAATGA-AGTCTTCTCATTAGGATACAGGATATTGATACTTTG
66 TCTTTTCAGGATTAGGCACCATAAA-CATAGTCTTCTCATTAGGATACACGATATTGATGCTTTG
* ** *
1261259 GTTTCACAACAAAGGCTTTCTTCCCATGAATTGTTGTAAAGTTTAAGTTCGTGCCTCAAATGAGA
130 GTTTCGCAACAAAGGCTTTCTTCCCACCAATTGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGA
1261324 CAAAC-TCGGATTCTAGTAATGATCTTCATTCTTTTTGTGA-AAGGCACTATAAACACATTCTCC
195 CAAACAT-GGATTCTAGTAATGATCTTCATTCTTTTTGTGATAAGGCACTATAAACACATTCTCC
* *
1261387 TCATTAAGATAAATGACATTGATGATTTTCTTTTGCATTAAAATCTTTTCTTTGCCCAATTATCC
259 TCATTAGGATAAATGACATTGATGATTTTCTTTTGCATT-AAATCTTTTCTTTGCCCTATT-TCC
* * * * * *
1261452 TTAAAATGAAAGTTCATCTCGTGAATAAGACAAGCATTAATTCTCGTAACAGTCTCAACTCTTTT
322 TTAAAATCAAAGTTCATC-CATGAATAAGACAAGCATTGATTCTCATAACAGTCTCCATTCTTTT
*
1261517 CAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATAC-AT-TGC-C-AAAA-CCCATCA
386 CAAGATTGGGAAGCCAAAACACATTGCCTTCGTTAGGATACTATGTGCACAAAAATCCCATCA
* * * *
1261575 TTTTCGATAGAATCAAAACTTATCTCTTAAATGAGAAAAATATGAATACTCATACTAATCCCCAT
1 TTTTCGATAGAATCAAAACTTGTCTCTTAAATAAGATAAACATGAATACTCATACTAATCCCCAT
* * * * *
1261640 GCTTTTCAGGATTAGGCACCATAAACATGGTCTTCTTATTAGGATACATGATATTGATGCTTTAG
66 TCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGG
* * * * *
1261705 TTTCGCAAGAAAGGCTTTCTTCTCACCAATTGTTGCAAAGTCTAAGTTCGTGCTTTAAATGAGAC
131 TTTCGCAACAAAGGCTTTCTTCCCACCAATTGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGAC
* * ** * *
1261770 AAATATGGATGCTAACAATAATCTTCATTCTTTTTGTGATAAGGTACTATAAACACATTCTCCTC
196 AAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATAAGGCACTATAAACACATTCTCCTC
* * * *
1261835 ATTAGGATAAA-CAGCATTGATGATTTTTTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCTT
261 ATTAGGATAAATGA-CATTGATGATTTTCTTTTGCAT-TAAATCTTTTCTTTGCCCTATTTCCTT
* * * * * *
1261899 AAAATCAAAGTTCATCCTTTGAATATGATAAGCATCGATTGTCAAAACAGTCTCCATTCTTTTCA
324 AAAATCAAAGTTCATCC-ATGAATAAGACAAGCATTGATTCTCATAACAGTCTCCATTCTTTTCA
*
1261964 AGATTGGGAAGCCAAAACACATTGCCTCCGTTAGGAAAAATGACATTGATGCTTTGGTGCACAAG
388 AGATTGGGAAGCCAAAACACATTGCCTTCGTTAGG----AT-AC--T-A-----T-GTGCAC-A-
***
1262029 AAAAGCTTTTATTTCTGCCA
437 AAAA--TCCCA----T--CA
* * ** **
1262049 TTTTCGATAGAATC-AAAGTCTGTCTCTTAAATAAGATAAACATAAATACTCACCCTAATCCTTA
1 TTTTCGATAGAATCAAAACT-TGTCTCTTAAATAAGATAAACATGAATACTCATACTAATCCCCA
* * * * *
1262113 TTCTTATCAGGATTAGGCACCATAAACACATTCTTTTCATTAGGATACACAATATTGATGCTTTG
65 TTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTG
* * * * * * * *
1262178 GTTTCGTAACAAAAGATTTCTTCCGATCAATTTTTGTGAAGTCTAAGTACGTGCCTCAAATGAGA
130 GTTTCGCAACAAAGGCTTTCTTCCCACCAATTGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGA
* * * * * * * *
1262243 CAAACATGAATTCTGGAAAAT-ATGTTCATTCTGTTTGTCATAAGGCACTACAAACACATTCTTC
195 CAAACATGGATTCTAG-TAATGATCTTCATTCTTTTTGTGATAAGGCACTATAAACACATTCTCC
*
1262307 TCATTAGGATAAACGACATTGATGATTTTCTTTTGCATGTAAATCTTTTCTTTGCCCTATTTTCC
259 TCATTAGGATAAATGACATTGATGATTTTCTTTTGCAT-TAAATCTTTTCTTTGCCCTA-TTTCC
* *
1262372 TTAAAATCAAAGTTCATCACAT-ATATAAGACAAGCACTGATTCTCCTAACAGTCTCCATTCTTT
322 TTAAAATCAAAGTTCATC-CATGA-ATAAGACAAGCATTGATTCTCATAACAGTCTCCATTCTTT
* * *
1262436 TCAAGATTGGGAA-CCAATAACATATATG-CTTCATTAGGGTACACGACATTGATGCTTTGGTGT
385 TCAAGATTGGGAAGCCAA-AACACAT-TGCCTTCGTTA--G-----G--A-T-A--CTAT-GTG-
* * *
1262499 CTCAAGAAAAGCTTTTCTTCCCACCG
433 CAC-A-AAAA--------TCCCATCA
* * *
1262525 TTTTTGATAGAATCAAAGCTTGTCTCTCAAATAAG-TCAAACATGAATACTCATACTAATCCCCA
1 TTTTCGATAGAATCAAAACTTGTCTCTTAAATAAGAT-AAACATGAATACTCATACTAATCCCCA
* * *
1262589 TTCCTTTCAAGATTAGGCACCATAAACAAAGTCTTCTCATTAGCG-TACACGATATTGATGCTTT
65 TTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAG-GATACACGATATTGATGCTTT
* * * *
1262653 GGTTTTGCAACAAAGGCTTTTTTCCCACCAATTGTTGTCAAGTCTAAGTTCATGCCTCAAATGAG
129 GGTTTCGCAACAAAGGCTTTCTTCCCACCAATTGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAG
* * * *
1262718 GCAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATAAGGCGCTATAAACAAATTATCC
194 ACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATAAGGCACTATAAACACATTCTCC
*
1262783 TCATTACGATAAATGACATTGATGATTTTCTTT
259 TCATTAGGATAAATGACATTGATGATTTTCTTT
1262816 GGTTTCGCAA
Statistics
Matches: 1012, Mismatches: 165, Indels: 97
0.79 0.13 0.08
Matches are distributed among these distances:
444 2 0.00
445 289 0.29
446 76 0.08
449 2 0.00
450 2 0.00
454 1 0.00
459 1 0.00
461 3 0.00
462 1 0.00
465 4 0.00
468 1 0.00
472 1 0.00
473 4 0.00
474 265 0.26
475 94 0.09
476 251 0.25
477 5 0.00
480 2 0.00
481 4 0.00
482 3 0.00
483 1 0.00
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.35
Consensus pattern (448 bp):
TTTTCGATAGAATCAAAACTTGTCTCTTAAATAAGATAAACATGAATACTCATACTAATCCCCAT
TCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGG
TTTCGCAACAAAGGCTTTCTTCCCACCAATTGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGAC
AAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATAAGGCACTATAAACACATTCTCCTC
ATTAGGATAAATGACATTGATGATTTTCTTTTGCATTAAATCTTTTCTTTGCCCTATTTCCTTAA
AATCAAAGTTCATCCATGAATAAGACAAGCATTGATTCTCATAACAGTCTCCATTCTTTTCAAGA
TTGGGAAGCCAAAACACATTGCCTTCGTTAGGATACTATGTGCACAAAAATCCCATCA
Found at i:1262698 original size:476 final size:472
Alignment explanation
Indices: 1261568--1262815 Score: 1539
Period size: 474 Copynumber: 2.6 Consensus size: 472
1261558 ATTGCCAAAA
* * * * * *
1261568 CCCATCATTTTCGATAGAATCAAAACTTATCTCTTAAATGAGAAAAATATGAATACTCATACTAA
1 CCCACCATTTTCGATAGAATCAAAGCTTGTCTCTTAAATAAG-TAAACATGAATACTCATACTAA
* * ** * *
1261633 TCCCCATGCTTTTCAGGATTAGGCACCATAAACATGGTCTTCTTATTAGGATACATGATATTGAT
65 TCCCCATTCCTTTCAGGATTAGGCACCATAAACAAAGTCTTCTCATTAGGATACACGATATTGAT
* * * * *
1261698 GCTTTAGTTTCGCAAGAAAGGCTTTCTTCTCACCAATTGTTG-CAAAGTCTAAGTTCGTGCTTTA
130 GCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTGTTGTC-AAGTCTAAGTTCGTGCCTCA
* * *
1261762 AATGAGACAAATATGGATGCT-AACAATAATCTTCATTCTTTTTGTGATAAGGTACTATAAACAC
194 AATGAGACAAACATGGATTCTGAA-AATAATCTTCATTCTTTTTGTGATAAGGCACTATAAACAC
*
1261826 ATTCTCCTCATTAGGATAAAC-AGCATTGATGATTTTTTTTTGCATGGAAATCTTTTCTTTGCCC
258 ATTCTCCTCATTAGGATAAACGA-CATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCC
* * * *
1261890 TATTTTCTTAAAATCAAAGTTCATCCTTTGAATATGATAAGCATCGATTGTCAAAACAGTCTCCA
322 TATTTTCTTAAAATCAAAGTTCATCCTAT-AATAAGACAAGCATCGATTCTCAAAACAGTCTCCA
* *
1261955 TTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTCCGTTAGGAAAAATGACATTGATGCTTTG
386 TTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTCCATTAGGAAAAACGACATTGATGCTTTG
1262020 GTGCACAAGAAAAGCTTTTATT
451 GTGCACAAGAAAAGCTTTTATT
* ** * **
1262042 TCTGCCATTTTCGATAGAATCAAAG-TCTGTCTCTTAAATAAGATAAACATAAATACTCACCCTA
1 CCCACCATTTTCGATAGAATCAAAGCT-TGTCTCTTAAATAAG-TAAACATGAATACTCATACTA
** * * * *
1262106 ATCCTTATT-CTTATCAGGATTAGGCACCATAAACACATTCTTTTCATTAGGATACACAATATTG
64 ATCCCCATTCCTT-TCAGGATTAGGCACCATAAACAAAGTCTTCTCATTAGGATACACGATATTG
* * * * * * * *
1262170 ATGCTTTGGTTTCGTAACAAAAGATTTCTTCCGATCAATTTTTGTGAAGTCTAAGTACGTGCCTC
128 ATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTGTTGTCAAGTCTAAGTTCGTGCCTC
* * * * *
1262235 AAATGAGACAAACATGAATTCTGGAAAAT-ATGTTCATTCTGTTTGTCATAAGGCACTACAAACA
193 AAATGAGACAAACATGGATTCT-GAAAATAATCTTCATTCTTTTTGTGATAAGGCACTATAAACA
* *
1262299 CATTCTTCTCATTAGGATAAACGACATTGATGATTTTCTTTTGCATGTAAATCTTTTCTTTGCCC
257 CATTCTCCTCATTAGGATAAACGACATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCC
**
1262364 TATTTTCCTTAAAATCAAAGTTCATCAC-ATATATAAGACAAGCA-CTGATTCTCCTAACAGTCT
322 TATTTT-CTTAAAATCAAAGTTCATC-CTATA-ATAAGACAAGCATC-GATTCTCAAAACAGTCT
* * ** *
1262427 CCATTCTTTTCAAGATTGGGAA-CCAATAACATATATG-CTTCATTAGGGTACACGACATTGATG
383 CCATTCTTTTCAAGATTGGGAAGCCAA-AACACAT-TGCCTCCATTAGGAAAAACGACATTGATG
* *
1262490 CTTTGGTGTCTCAAGAAAAGCTTTTCTT
446 CTTTGGTG-CACAAGAAAAGCTTTTATT
* * *
1262518 CCCACCGTTTTTGATAGAATCAAAGCTTGTCTCTCAAATAAGTCAAACATGAATACTCATACTAA
1 CCCACCATTTTCGATAGAATCAAAGCTTGTCTCTTAAATAAGT-AAACATGAATACTCATACTAA
*
1262583 TCCCCATTCCTTTCAAGATTAGGCACCATAAACAAAGTCTTCTCATTAGCG-TACACGATATTGA
65 TCCCCATTCCTTTCAGGATTAGGCACCATAAACAAAGTCTTCTCATTAG-GATACACGATATTGA
* * *
1262647 TGCTTTGGTTTTGCAACAAAGGCTTTTTTCCCACCAATTGTTGTCAAGTCTAAGTTCATGCCTCA
129 TGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTGTTGTCAAGTCTAAGTTCGTGCCTCA
* * * * *
1262712 AATGAGGCAAACATGGATTCT-AGTAATGATCTTCATTCTTTTTGTGATAAGGCGCTATAAACAA
194 AATGAGACAAACATGGATTCTGA-AAATAATCTTCATTCTTTTTGTGATAAGGCACTATAAACAC
* * *
1262776 ATTATCCTCATTACGATAAATGACATTGATGATTTTCTTT
258 ATTCTCCTCATTAGGATAAACGACATTGATGATTTTCTTT
1262816 GGTTTCGCAA
Statistics
Matches: 653, Mismatches: 102, Indels: 36
0.83 0.13 0.05
Matches are distributed among these distances:
473 3 0.00
474 273 0.42
475 108 0.17
476 264 0.40
477 5 0.01
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.35
Consensus pattern (472 bp):
CCCACCATTTTCGATAGAATCAAAGCTTGTCTCTTAAATAAGTAAACATGAATACTCATACTAAT
CCCCATTCCTTTCAGGATTAGGCACCATAAACAAAGTCTTCTCATTAGGATACACGATATTGATG
CTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTGTTGTCAAGTCTAAGTTCGTGCCTCAAA
TGAGACAAACATGGATTCTGAAAATAATCTTCATTCTTTTTGTGATAAGGCACTATAAACACATT
CTCCTCATTAGGATAAACGACATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATT
TTCTTAAAATCAAAGTTCATCCTATAATAAGACAAGCATCGATTCTCAAAACAGTCTCCATTCTT
TTCAAGATTGGGAAGCCAAAACACATTGCCTCCATTAGGAAAAACGACATTGATGCTTTGGTGCA
CAAGAAAAGCTTTTATT
Found at i:1262774 original size:158 final size:158
Alignment explanation
Indices: 1262604--1267687 Score: 1475
Period size: 158 Copynumber: 32.1 Consensus size: 158
1262594 TTCAAGATTA
* * * *
1262604 GGCACCATAAACAAAGTCTT-CTCATTAGCG-TACACGATATTGATGCTTTGGTTTTGCAACAAA
1 GGCACTATAAACAAA-TTTTCCTCATTAG-GATACATGATATTAATGCTTTGGTTTTGCAACAAA
* * * * *
1262667 GGCTTTTTTCCCACCAATTGTTGTCAAGTCTAAGTTCATGCCTCAAATGAGGCAAACATGGATTC
64 GGCTTTCTTCCCACCAATTGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTC
*
1262732 TAGTAATGATCTTCATTCTTTTTGTGATAA
129 TAGTAATGATCTTCATTCTTTTTGTGATAT
* * * * * * *
1262762 GGCGCTATAAACAAATTATCCTCATTACGATAAATGACATTGATGATTTTCTTTGGTTTCGCAAC
1 GGCACTATAAACAAATTTTCCTCATTAGGATACATGATATT-A--A--TGCTTTGGTTTTGCAAC
* * *
1262827 AAAGGCTTTCTTCCCACTAATTGTTGTAAAGTCTAAGTTCGTACCTCAAATGAGGCAAATATGGA
61 AAAGGCTTTCTTCCCACCAATTGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGA
*
1262892 TTCTAGTAATGATCTTCATTCTTTTTGTGATTT
126 TTCTAGTAATGATCTTCATTCTTTTTGTGATAT
** **
1262925 GGCACTATAAA-AACATTTTCCTTTTTAGGATACATGATATTAATGCTTTGG-TTT-C--GTAA-
1 GGCACTATAAACAA-ATTTTCCTCATTAGGATACATGATATTAATGCTTTGGTTTTGCAACAAAG
* *
1262984 -CTTTCTTCCAACCAATTGTAGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCT
65 GCTTTCTTCCCACCAATTGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCT
* * * * * *
1263048 ACTAATTATTTTCGTTCTTTATGTGATTT
130 AGTAATGATCTTCATTCTTTTTGTGATAT
* *
1263077 GGCACTATAAA-AACATTTTCCTCTTTAGGATACATGATATTAATGCTTTGGTTTTGTAACAAAG
1 GGCACTATAAACAA-ATTTTCCTCATTAGGATACATGATATTAATGCTTTGGTTTTGCAACAAAG
* * * *
1263141 GCTTTCTTCCCATCAATTGTTGTAAAGTATAAGTTTGTGCCTCAAATGAGACCAATATGGATTCT
65 GCTTTCTTCCCACCAATTGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCT
* * * *
1263206 ACTAGTGATTTTCATTCTTTTTGTGATTT
130 AGTAATGATCTTCATTCTTTTTGTGATAT
* * * *
1263235 GGCACTATAAA-AAGATTTTACTCTTTAGGATACATGATATTAATGCTTTGGTTTGGTAACAAAG
1 GGCACTATAAACAA-ATTTTCCTCATTAGGATACATGATATTAATGCTTTGGTTTTGCAACAAAG
* * *
1263299 GCTTTCTTCCCCCCAATTGTTGTAAAGTCTAAGTTCGTGTCTCAAATGAGACAAATGTGGATTCT
65 GCTTTCTTCCCACCAATTGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCT
* * *
1263364 AGTATTGATCATCATTCTTTTTGTGATAA
130 AGTAATGATCTTCATTCTTTTTGTGATAT
* * * * *
1263393 GGCACTATAAACACATTCTCCGCATTAGGATATATGATATTAATGCTTTGGTTTCGCAACAAAGG
1 GGCACTATAAACAAATTTTCCTCATTAGGATACATGATATTAATGCTTTGGTTTTGCAACAAAGG
* * *
1263458 CTTTCTTCCCACCGATTGTTGTAAAGTCTAAGTTTGTTCCTCAAATGAGACAAATATGGATTCTA
66 CTTTCTTCCCACCAATTGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTA
**
1263523 GTAACAATCTTCATTCTTTTTGTGATAT
131 GTAATGATCTTCATTCTTTTTGTGATAT
* * * * ** * * * * ** * ** *
1263551 GGCACTATGAACACATTCT-CTGCGTTAGGATATTTGACATTGACGTTTTTCTATTGCATGAAAA
1 GGCACTATAAACAAATTTTCCT-CATTAGGATACATGATATTAATGCTTTGGTTTTGCAACAAAG
* ** * ** * * ** * *** *
1263615 CCTTTTCTTTGC-CCAATTATCCTCG-AAA-TGAAAGTTCATCCCTTGAATAAGACAAGCCT-CA
65 GC-TTTCTTCCCACCAATTGT--T-GTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGA
* * * * ***
1263676 CTTCT-GATAGT-AGTCTCCACTCCTTTCAAGAT-T
126 -TTCTAG-TAATGA-TCTTCATTCTTTTTGTGATAT
* * * * ** * * * * *
1263709 GGGAAGCCA-AAAC-ACTTTGCCTTTGTTCGGATAGC-CGACATTGATGCTTTGCTTTTG-AATG
1 -GGCA-CTATAAACAAATTTTCC-TCATTAGGATA-CATGATATTAATGCTTTGGTTTTGCAA--
* * ** * * * * * * * **
1263770 GAAA-TCTTTTCTTTGC-CCAATTATCCT-TAAAATCAAAGTTCAT-CCCCTGAATAAGACAAGG
60 CAAAGGC-TTTCTTCCCACCAATTGT--TGTAAAGTCTAAGTTCGTGCCTC-AAATGAGACAAAT
* ** * * * *** *
1263831 ATTGATTCTCCTAA-CAGGCTCCATT-TTTTCCAAGGT-T
121 ATGGATTCTAGTAATGA-TCTTCATTCTTTT-TGTGATAT
* * * * * * * * * *
1263868 GGGAAGCCA-AAACATATTGCTT--TCGTTAGGATACACGACATTGATGCTTTGGTGTCGCAAGA
1 -GGCA-CTATAAACAAATT--TTCCTCATTAGGATACATGATATTAATGCTTTGGTTTTGCAACA
* * * * * *
1263930 AAAGCTTTTCTTCCCGCC-GTTTTTGATAGAA-TCAAAGGTTTTC-T-CCT-AAATAAGA-AAGA
62 AAGGC-TTTCTTCCCACCAATTGTTG-TA-AAGTCTAA-G--TTCGTGCCTCAAATGAGACAA-A
** * * * ** * *
1263989 CGTGAATACTCA--AACTAATCCCCATTCTTTTTGGGGT-T
120 TATGGATTCT-AGTAA-TGATCTTCATTCTTTTTGTGATAT
* * * * *
1264027 AGGCA-TCATAAACATAGTCTT-CTCGTTAAGATACATGATATTGAA-GCTTTGGTTTCGCAACA
1 -GGCACT-ATAAACA-AATTTTCCTCATTAGGATACATGATATT-AATGCTTTGGTTTTGCAACA
* * * * *
1264089 AAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGGTCCTGCCTCAAATGCGACAAACATGGAT
62 AAGGCTTTCTTCCCACCAATTGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGAT
* *
1264154 TCTACTAATGA-CTTTCATTCTTTTTGTGATTT
127 TCTAGTAATGATC-TTCATTCTTTTTGTGATAT
* * * * *
1264186 GGCAATATAAACACATTTTCCTCATTAGGATATATGATATTAATGCTTTGCTTTCGCAACAAAGG
1 GGCACTATAAACAAATTTTCCTCATTAGGATACATGATATTAATGCTTTGGTTTTGCAACAAAGG
* * *
1264251 CTTTCTTCCCACCGATTGTTGTAAAGTCTTAAGTTCGTGCCTAAAATGAGACAAATGTGGATTCT
66 CTTTCTTCCCACCAATTGTTGTAAAGTC-TAAGTTCGTGCCTCAAATGAGACAAATATGGATTCT
* * *
1264316 AGTATTGATCATCATTCTTTTTGTGATAA
130 AGTAATGATCTTCATTCTTTTTGTGATAT
* * * * *
1264345 GGCACTATAAACACATTCTCCGCATTAGGATATATGATATTAATGCTTTGGTTTCGCAACAAAGG
1 GGCACTATAAACAAATTTTCCTCATTAGGATACATGATATTAATGCTTTGGTTTTGCAACAAAGG
* * *
1264410 CTTTCTTCCCACCGATTGTTGTAAAGTCTAAGTTTGTTCCTCAAATGAGACAAATATGGATTCTA
66 CTTTCTTCCCACCAATTGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTA
**
1264475 GTAACAATCTTCATTCTTTTTGTGATAT
131 GTAATGATCTTCATTCTTTTTGTGATAT
* * * * * * * * ** * **
1264503 GGCACTATGAACACATTCT-CTGCGTTAGGATA-ATTGACATTGACGTTTTTCTATTGCATGAAA
1 GGCACTATAAACAAATTTTCCT-CATTAGGATACA-TGATATTAATGCTTTGGTTTTGCAACAAA
** ** * ** * ** * * ** * *** *
1264566 TCCTTTTCTTTGC-CCAATTATCCTCAAAATGAAAGTTCATCCCTTGAATAAGACAAGCCT-CAC
64 GGC-TTTCTTCCCACCAATTGTTGT-AAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGA-
* * * ***
1264629 TTCT-GATAAT-AGTCTCCACTCCTTTCAAGAT-T
126 TTCTAG-TAATGA-TCTTCATTCTTTTTGTGATAT
* * * * ** * * * * *
1264661 GGGAAGCCA-AAAC-ACTTTGCCTTTGTTCGGATAGC-CGACATTGATGCTTTGCTTTTG-AATG
1 -GGCA-CTATAAACAAATTTTCC-TCATTAGGATA-CATGATATTAATGCTTTGGTTTTGCAA--
* * ** * * * * * * * **
1264722 GAAA-TCTTTTCTTTGC-CCAATTATCCT-TAAAATCAAAGTTCAT-CCCCTGAATAAGACAAGG
60 CAAAGGC-TTTCTTCCCACCAATTGT--TGTAAAGTCTAAGTTCGTGCCTC-AAATGAGACAAAT
* ** * * * ***
1264783 ATCGATTCTCCTAA-CAGGCTCCATTTCTTCCAAG-G-T-T
121 ATGGATTCTAGTAATGA-TCTTCA-TTCTT-TTTGTGATAT
* * * * * * * * ** *
1264820 GGGAAGCCA-AAACATATTGCTT--TCGTTAGGATACACGACATTGATGCTTTGGTGTCACAAGA
1 -GGCA-CTATAAACAAATT--TTCCTCATTAGGATACATGATATTAATGCTTTGGTTTTGCAACA
* * * * *
1264882 AAAGCTTTTCTTCCCACC-GTTTTTGATAGAA-TCAAAGGTTTTC-T-CCT-AAATAAGA-AAGA
62 AAGGC-TTTCTTCCCACCAATTGTTG-TA-AAGTCTAA-G--TTCGTGCCTCAAATGAGACAA-A
** * * * * * ** * *
1264941 CGTGAATACTCA-CACTAATCCCCATTCTTTTTAGGGTTA-
120 TATGGATTCT-AGTAATGATCTTCATTCTTTTT-GTGATAT
* * * * * *
1264980 GGCACCATAAACATAGTCTT-CTCGTTAAGATACATGATATTGAA-GCTTTGGTTTCGCAACAAA
1 GGCACTATAAACA-AATTTTCCTCATTAGGATACATGATATT-AATGCTTTGGTTTTGCAACAAA
* * * * *
1265043 GGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGGTCCTGCCTCAAATGCGACAAACATGGATTC
64 GGCTTTCTTCCCACCAATTGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTC
* *
1265108 TACTAATGA-CTTTCATTCTTTTTGTGATTT
129 TAGTAATGATC-TTCATTCTTTTTGTGATAT
* * *
1265138 GGCACTATAAACACATTTTCCTCATTAGGAT-CTATGATATTAATGCTTTGCTTTCGCAACAAAG
1 GGCACTATAAACAAATTTTCCTCATTAGGATAC-ATGATATTAATGCTTTGGTTTTGCAACAAAG
*
1265202 GCTTTCTTCCCACCGATTGTTGTAAAGTCTTAAGTTCGTGCCTCAAATGAGACAAATATGGATTC
65 GCTTTCTTCCCACCAATTGTTGTAAAGTC-TAAGTTCGTGCCTCAAATGAGACAAATATGGATTC
1265267 TAGTAATGATCTTCATTCTTTTTGTGATAT
129 TAGTAATGATCTTCATTCTTTTTGTGATAT
* * * * * ** *** **
1265297 GGCACTATGAACACAA-TATCCGCATTAGGATA-ATTGACATTGATATTTTTCCTTTGCATGAAA
1 GGCACTATAAACA-AATTTTCCTCATTAGGATACA-TGATATTAATGCTTTGGTTTTGCAACAAA
** ** * * * * * ** * ** **
1265360 ACCTTTTCTTTGC-CCAATTATCCT-TAAAATCAAAGTTCTTCCCTTGAATAAGACATGTATCAA
64 GGC-TTTCTTCCCACCAATTGT--TGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGA
** * * **
1265423 TTCTCCTAA-CAGTCTCCATT-TTTTTCAAGAT-T
126 TTCTAGTAATGA-TCTTCATTCTTTTT-GTGATAT
* * * * * * * * * ** ** *
1265455 AGGAAGCCA-AAAC-ACTTTGCCTTCGTTAGGATGCACGACATTGATGCTTTGGGGTCACAAGAA
1 -GGCA-CTATAAACAAATTTTCC-TCATTAGGATACATGATATTAATGCTTTGGTTTTGCAACAA
* * * * * * * * * * * *
1265518 AAGCATTTCTTCCCATC-GTTTTTGATAGAA-TCCAAGTT-TTTCTCTTACATAAGACTAACATG
63 AGGC-TTTCTTCCCACCAATTGTTG-TA-AAGTCTAAGTTCGTGC-CTCAAATGAGACAAATATG
* * * * *
1265580 AATACTTACGCTAATG--C-CCATTCTTTTCTGGGTTA-
124 GATTC-TA-G-TAATGATCTTCATTCTTTT-TGTGATAT
* * * * * * * * *
1265615 GGTACCATAAATATAGTCTT-CTCATTTGGATACATGATACTGAA-GCTTTGGTTTTCCATCAAA
1 GGCACTATAAACA-AATTTTCCTCATTAGGATACATGATA-TTAATGCTTTGGTTTTGCAACAAA
* * * * * *
1265678 GGCTTTCTTCCCACCAGTTATTGTAAAGTCTAATTTCATGCCTCAAATGTGACAAACATGGATTC
64 GGCTTTCTTCCCACCAATTGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTC
* * * * *
1265743 TACTGATGATTTTCATTCTTTTTTTGATTT
129 TAGTAATGATCTTCATTCTTTTTGTGATAT
* * * *
1265773 GGCACTATAAA-AACATTTTCCTCTTTAGGAAACATGATATTCATGCTTTGG-TTT-CATTATAA
1 GGCACTATAAACAA-ATTTTCCTCATTAGGATACATGATATTAATGCTTTGGTTTTGCA--ACAA
*
1265835 AGGCTTTCTTCCCACCAATTGTTGTAAAGTCTACGTTCGTGCCTCAAATGAGACAAATATGGATT
63 AGGCTTTCTTCCCACCAATTGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATT
* *
1265900 CTAGTAATGATCTTCATTTTTTTTTTGTGATAA
128 CTAGTAATGATCTTCA--TTCTTTTTGTGATAT
* * * * * * * ** ** *
1265933 GGCACTATAAATATATTCTCCGCATTAGGATA-ATTGACATTGATGTTTTTCTTTTGCATTAATG
1 GGCACTATAAACAAATTTTCCTCATTAGGATACA-TGATATTAATGCTTTGGTTTTGCAACAAAG
* ** * * ** * * * * ** *
1265997 TCTTTTCTTTGC-CCAATTATCCT-TAAAATGAAAGTTCAT-CCCCTGAATAAGACAAGCATCGA
65 GC-TTTCTTCCCACCAATTGT--TGTAAAGTCTAAGTTCGTGCCTC-AAATGAGACAAATATGGA
* * ** * ***
1266059 TTCTCGTAAT-AGTCTCCACACCTTTCAAGAT-T
126 TTCTAGTAATGA-TCTTCATTCTTTTTGTGATAT
* * * * * * * * * * *
1266091 GGGAAGCCA-AAACACA-TTGCCTTCAATAGGATACACGACATTGATGCTTTGATGTCT-CAAGA
1 -GGCA-CTATAAACAAATTTTCC-TCATTAGGATACATGATATTAATGCTTTGGT-TTTGCAACA
* * * * * * * * *
1266153 AAAGCTTTTCTTCTCGCC-ATTTTTGATAGAA-TCAAAGTTTGT-CTCTTAAATAAGA-AAGACA
62 AAGGC-TTTCTTCCCACCAATTGTTG-TA-AAGTCTAAGTTCGTGC-CTCAAATGAGACAA-ATA
* * * * *** ** *
1266214 CGAATACCCA--CCCGAATCCCCATTCTTTTCAG-GAT-T
122 TGGAT-TCTAGTAATG-ATCTTCATTCTTTT-TGTGATAT
* * * * * *
1266250 AGGCTCCATAAACAAAGTCTT-CTCAGGT-GGATACATGATTTTGAA-GCTTTGGTTTCGCAACA
1 -GGCACTATAAACAAA-TTTTCCTCA-TTAGGATACATGATATT-AATGCTTTGGTTTTGCAACA
* *
1266312 AAGGTTTTCTTCCCACCAATTGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAAGATGGAT
62 AAGGCTTTCTTCCCACCAATTGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGAT
** * *
1266377 TCTAGTGTTGATCATCATTCTTTTTGTGATAA
127 TCTAGTAATGATCTTCATTCTTTTTGTGATAT
* * * * * * * * * ** * **
1266409 GGAAGTATAAATAGATTCTCCGCATTAGGATA-ATTGACATTGATGTTTTTCTTTGGCATGGAAA
1 GGCACTATAAACAAATTTTCCTCATTAGGATACA-TGATATTAATGCTTTGGTTTTGCA-ACAAA
* ** * * * ** * * ** * * * *
1266473 -TCTTTTCTTTGC-CCAATTATTCCTAAAATGAAAGTTCATCCCTTGATTAAGA-AAAGCATCGA
64 GGC-TTTCTTCCCACCAATTGTT-GTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAA-TATGGA
** * * **
1266535 TTCTCCTAA-CAGTC-TCCTT-TTTTTCCAAGAT-T
126 TTCTAGTAATGA-TCTTCATTCTTTTT--GTGATAT
* * * * * * * * * *** *
1266567 GGGAAGCCA-AAACACA-TTACCTCCGTTAGGAAACACGACATTGATGCTTTGGTGCCGCAAGAA
1 -GGCA-CTATAAACAAATTTTCCT-CATTAGGATACATGATATTAATGCTTTGGTTTTGCAACAA
* *** * * * * * * * *
1266630 AAGCTTTTCTTCCTGTC-GTTTTTG-AGAGAATCAAAGTTTGT-CTCTTAAATAAGACAAACATG
63 AGGC-TTTCTTCCCACCAATTGTTGTA-A-AGTCTAAGTTCGTGC-CTCAAATGAGACAAATATG
* * * * * ** * * *
1266692 AATACTCA-CACTAATCCCCAATCTTTTTAGGGTTA-
124 GATTCT-AGTAATGATCTTCATTCTTTTT-GTGATAT
* * * *
1266727 GGCACCAT-AACATAGTCTT-CTCGTTAGGATACATGATATTGAAT-CTTTGGTTTTGCAACAAA
1 GGCACTATAAACA-AATTTTCCTCATTAGGATACATGATATT-AATGCTTTGGTTTTGCAACAAA
* * * * * * * *
1266789 GGCTTCCCTCCCACCAGTTTTTGAAAAGTCTAAGTTTTCATGCCTCAAATGCGACAAACATGGAT
64 GGCTTTCTTCCCACCAATTGTTGTAAAGTCTAAG--TTCGTGCCTCAAATGAGACAAATATGGAT
* * * * *
1266854 TCT-CTAATAATTTTCATTCTTTTTTTGATTT
127 TCTAGTAATGATCTTCATTCTTTTTGTGATAT
** * * *
1266885 GGCACTATAAACACTTTTTCCTCATTAGGATACATGATATTCATGCTTTGATTTGGCAACAAAGG
1 GGCACTATAAACAAATTTTCCTCATTAGGATACATGATATTAATGCTTTGGTTTTGCAACAAAGG
* *
1266950 CTTTCTTCCCACCAATTGTTATAAAGTCTAAGTTGGTGCCTCAAATGAGACAAATATGGATTCTA
66 CTTTCTTCCCACCAATTGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTA
* *
1267015 GTAATGATCTCCAATCTTTTTGTGATAT
131 GTAATGATCTTCATTCTTTTTGTGATAT
* * * * * * ** **
1267043 GGCACTATAAACACAA-TCTCCTCATTACGATAAAAGACATTGAA-GTTTTTCTTTTGCATGAAA
1 GGCACTATAAACA-AATTTTCCTCATTAGGATACATGATATT-AATGCTTTGGTTTTGCAACAAA
** * * * * ** * * ** * ** *
1267106 ATCTTTTCTTTCC-CCTATT-TTCCTTAAAATGAAAGTTCTTCCCTTGAATAAGACAAGCATCGA
64 GGC-TTTCTTCCCACCAATTGTT--GTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGA
** ** * **
1267169 TTCT-CCAAACAGTCTCCATT-TTTTTCAAGAT-T
126 TTCTAGTAATGA-TCTTCATTCTTTTT-GTGATAT
* * * * * * * * **
1267201 GGGAAGCCA-AAACACA-TTGCCTTCTTTAGGATGCATGACATTAATGCTTTAGG-GTCACAA-A
1 -GGCA-CTATAAACAAATTTTCC-TCATTAGGATACATGATATTAATGCTTT-GGTTTTGCAACA
* * * * * * * * * * *
1267262 GAAAGCTTTTCTTCCCGCC-GTTTTTGATAGAA-TCCAAGTT-TTTCTCTTAAATAAGACTAACA
62 -AAGGC-TTTCTTCCCACCAATTGTTG-TA-AAGTCTAAGTTCGTGC-CTCAAATGAGACAAATA
* * * * * ** * *
1267324 TGAATACTCA-CACTAATCCCCATTCTTTTCTGGGTTA-
122 TGGATTCT-AGTAATGATCTTCATTCTTTT-TGTGATAT
* * * * * * * * **
1267361 GGTACCATAAATATAGTCTT-CTCATTAGGATACATCATACTGAA-GCATTGGTCCTGCAACAAA
1 GGCACTATAAACA-AATTTTCCTCATTAGGATACATGATA-TTAATGCTTTGGTTTTGCAACAAA
* * * * * * *
1267424 GGCTTTCTTCCAACCAGTTTTTGTAAAGTCTAAGTTCATGACTCAAATGCGACAAACATGGATTC
64 GGCTTTCTTCCCACCAATTGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTC
* * *
1267489 TAGTGATGATTTTCATTCTTTTTGTGATTT
129 TAGTAATGATCTTCATTCTTTTTGTGATAT
* * * **
1267519 GGCACAATAAACACATTTTCCTCATTAGGATACATGATATTAATGCTTTGGCTTCACAACAAAGG
1 GGCACTATAAACAAATTTTCCTCATTAGGATACATGATATTAATGCTTTGGTTTTGCAACAAAGG
* *
1267584 CTTTCTTCCAACCAATTGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGATAAATATGGATTCTA
66 CTTTCTTCCCACCAATTGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTA
* * ** *
1267649 CTAATGATTTTCATTCTTTACGTGATTT
131 GTAATGATCTTCATTCTTTTTGTGATAT
1267677 GGCACTATAAA
1 GGCACTATAAA
1267688 GGCTTTTTTC
Statistics
Matches: 3689, Mismatches: 943, Indels: 588
0.71 0.18 0.11
Matches are distributed among these distances:
152 133 0.04
153 3 0.00
154 2 0.00
155 8 0.00
156 8 0.00
157 133 0.04
158 1494 0.40
159 1483 0.40
160 202 0.05
161 70 0.02
162 17 0.00
163 136 0.04
ACGTcount: A:0.29, C:0.20, G:0.16, T:0.36
Consensus pattern (158 bp):
GGCACTATAAACAAATTTTCCTCATTAGGATACATGATATTAATGCTTTGGTTTTGCAACAAAGG
CTTTCTTCCCACCAATTGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTA
GTAATGATCTTCATTCTTTTTGTGATAT
Found at i:1263853 original size:159 final size:159
Alignment explanation
Indices: 1263616--1263918 Score: 382
Period size: 159 Copynumber: 1.9 Consensus size: 159
1263606 GCATGAAAAC
* * * *
1263616 CTTTTCTTTGCCCAATTATCCTCGAAATGAAAGTTCATCCCTTGAATAAGACAAGCCTCACTTCT
1 CTTTTCTTTGCCCAATTATCCTCAAAATCAAAGTTCATCCCCTGAATAAGACAAGACTCACTTCT
* ** * *
1263681 GATAGTAGTCTCCACTCCTTT-CAAGATTGGGAAGCCAAAACACT-TTGCCTTT-GTTCGGATAG
66 CATAACAGGCTCCA-TCCTTTCCAAGATTGGGAAGCCAAAACA-TATTG-CTTTCGTTAGGATA-
1263743 C-CGACATTGATGCTTTGCTTTTGAATGGAAAT
127 CACGACATTGATGCTTTGCTTTTGAATGGAAAT
* * *
1263775 CTTTTCTTTGCCCAATTATCCTTAAAATCAAAGTTCATCCCCTGAATAAGACAAGGATTGA-TTC
1 CTTTTCTTTGCCCAATTATCCTCAAAATCAAAGTTCATCCCCTGAATAAGACAA-GACTCACTTC
* ** *
1263839 TCCTAACAGGCTCCATTTTTTCCAAGGTTGGGAAGCCAAAACATATTGCTTTCGTTAGGATACAC
65 TCATAACAGGCTCCATCCTTTCCAAGATTGGGAAGCCAAAACATATTGCTTTCGTTAGGATACAC
1263904 GACATTGATGCTTTG
130 GACATTGATGCTTTG
1263919 GTGTCGCAAG
Statistics
Matches: 123, Mismatches: 16, Indels: 10
0.83 0.11 0.07
Matches are distributed among these distances:
158 10 0.08
159 110 0.89
160 3 0.02
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.33
Consensus pattern (159 bp):
CTTTTCTTTGCCCAATTATCCTCAAAATCAAAGTTCATCCCCTGAATAAGACAAGACTCACTTCT
CATAACAGGCTCCATCCTTTCCAAGATTGGGAAGCCAAAACATATTGCTTTCGTTAGGATACACG
ACATTGATGCTTTGCTTTTGAATGGAAAT
Found at i:1264471 original size:317 final size:317
Alignment explanation
Indices: 1262634--1267687 Score: 1525
Period size: 317 Copynumber: 15.9 Consensus size: 317
1262624 CTCATTAGCG
* * * * *
1262634 TACACGATATTGATGCTTTGGTTTTGCAACAAAGGCTTTTTTCCCACCAATTGTTGTCAAGTCTA
1 TACATGATATTAATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTGTTGTAAAGTCTA
* * * * *
1262699 AGTTCATGCCTCAAATGAGGCAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATAAGG
66 AGTTCGTGCCTCAAATGAGACAAACGTGGATTCTAGTATTGATCATCATTCTTTTTGTGATAAGG
* * * * * * *
1262764 CGCTATAAACAAATTATCCTCATTACGATAAATGACATTGATGATTTTCTTTGGTTTCGCAACAA
131 CACTATAAACACATTCTCCTCATTAGGATACATGATATT-A--A--TGCTTTGGTTTCGCAACAA
* * * *
1262829 AGGCTTTCTTCCCACTAATTGTTGTAAAGTCTAAGTTCGTACCTCAAATGAGGCAAATATGGATT
191 AGGCTTTCTTCCCACCAATTGTTGTAAAGTCTAAGTTTGTTCCTCAAATGAGACAAATATGGATT
* * **
1262894 CTAGTAATG-ATCTTCATTCTTTTTGTGATTTGGCACTATAAAAACATTTTCCTTTTTAGGA
256 CTACTAATGAATCTTCATTCTTTTTGTGATTTGGCACTATAAACACATTTTCCTCGTTAGGA
* * *
1262955 TACATGATATTAATGCTTTGGTTTCG----TAA--CTTTCTTCCAACCAATTGTAGTAAAGTCTA
1 TACATGATATTAATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTGTTGTAAAGTCTA
** * ** * * **
1263014 AGTTCGTGCCTCAAATGAGACAAATATGGATTCTACTAATT-ATTTTCGTTCTTTATGTGATTTG
66 AGTTCGTGCCTCAAATGAGACAAACGTGGATTCTAGT-ATTGATCATCATTCTTTTTGTGATAAG
* * * * *
1263078 GCACTATAAAAACATTTTCCTCTTTAGGATACATGATATTAATGCTTTGGTTTTGTAACAAAGGC
130 GCACTATAAACACATTCTCCTCATTAGGATACATGATATTAATGCTTTGGTTTCGCAACAAAGGC
* * * *
1263143 TTTCTTCCCATCAATTGTTGTAAAGTATAAGTTTGTGCCTCAAATGAGACCAATATGGATTCTAC
195 TTTCTTCCCACCAATTGTTGTAAAGTCTAAGTTTGTTCCTCAAATGAGACAAATATGGATTCTAC
* * * * * *
1263208 TAGTG-ATTTTCATTCTTTTTGTGATTTGGCACTATAAAAAGATTTTACTCTTTAGGA
260 TAATGAATCTTCATTCTTTTTGTGATTTGGCACTATAAACACATTTTCCTCGTTAGGA
* * *
1263265 TACATGATATTAATGCTTTGGTTTGGTAACAAAGGCTTTCTTCCCCCCAATTGTTGTAAAGTCTA
1 TACATGATATTAATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTGTTGTAAAGTCTA
* *
1263330 AGTTCGTGTCTCAAATGAGACAAATGTGGATTCTAGTATTGATCATCATTCTTTTTGTGATAAGG
66 AGTTCGTGCCTCAAATGAGACAAACGTGGATTCTAGTATTGATCATCATTCTTTTTGTGATAAGG
* *
1263395 CACTATAAACACATTCTCCGCATTAGGATATATGATATTAATGCTTTGGTTTCGCAACAAAGGCT
131 CACTATAAACACATTCTCCTCATTAGGATACATGATATTAATGCTTTGGTTTCGCAACAAAGGCT
* *
1263460 TTCTTCCCACCGATTGTTGTAAAGTCTAAGTTTGTTCCTCAAATGAGACAAATATGGATTCTAGT
196 TTCTTCCCACCAATTGTTGTAAAGTCTAAGTTTGTTCCTCAAATGAGACAAATATGGATTCTACT
* * * *
1263525 AA-CAATCTTCATTCTTTTTGTGATATGGCACTATGAACACATTCT-CTGCGTTAGGA
261 AATGAATCTTCATTCTTTTTGTGATTTGGCACTATAAACACATTTTCCT-CGTTAGGA
** * * * * ** ** ** ** *
1263581 TATTTGACATTGACGTTTTTCTATT-GCATGAAAACCTTTTCTTTGC-CCAATTATCCTCG-AAA
1 TACATGATATTAATGCTTTGGT-TTCGCAACAAAGGC-TTTCTTCCCACCAATTGT--T-GTAAA
** * * ** * * * * * * * *
1263643 -TGAAAGTTCATCCCTTGAATAAGACAAGCCT-CACTTCT-G-ATAGTAGTC-TCCACTCCTTTC
61 GTCTAAGTTCGTGCCTCAAATGAGACAAACGTGGA-TTCTAGTATTG-A-TCAT-CATTCTTTTT
** ** * * ** * * * * *
1263703 AAGATTGGGAAGCCA-AAACAC-TT-TGCCTTTGTTCGGATAGC-CGACATTGATGCTTTGCTTT
122 GTGATAAGGCA-CTATAAACACATTCT-CC-TCATTAGGATA-CATGATATTAATGCTTTGGTTT
* * * ** * * * ** * * *
1263764 TG-AATGGAAA-TCTTTTCTTTGC-CCAATTATCCT-TAAAATCAAAG-TTCATCCCCTGAATAA
183 CGCAA--CAAAGGC-TTTCTTCCCACCAATTGT--TGTAAAGTCTAAGTTTGTTCCTC-AAATGA
** * * * ** * *** * * * * *
1263824 GACAAGGATTGATTCTCCTAA-CAGGCTCCATT-TTTTCCAAGGTTGGGAAGCCA-AAACATATT
242 GACAAATATGGATTCTACTAATGAATCTTCATTCTTTT-TGTGATTTGGCA-CTATAAACACATT
1263886 GCTT--TCGTTAGGA
305 --TTCCTCGTTAGGA
* * * * * * * * *
1263899 TACACGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTCCCGCC-GTTTTTGATAGAA-T
1 TACATGATATTAATGCTTTGGTTTCGCAACAAAGGC-TTTCTTCCCACCAATTGTTG-TA-AAGT
* * * * * * * **
1263962 CAAAGGTTTTC-T-CCT-AAATAAGA-AAGACGTGAATACTCA-AACTAATCCCCATTCTTTTTG
63 CTAA-G--TTCGTGCCTCAAATGAGACAA-ACGTGGATTCT-AGTATTGATCATCATTCTTTTTG
* * * * * * * *
1264022 GGGTTAGGCA-TCATAAACATAGTCTTCTCGTTAAGATACATGATATTGAA-GCTTTGGTTTCGC
123 TGATAAGGCACT-ATAAACACATTCTCCTCATTAGGATACATGATATT-AATGCTTTGGTTTCGC
* * ** * * *
1264085 AACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGGTCCTGCCTCAAATGCGACAAACAT
186 AACAAAGGCTTTCTTCCCACCAATTGTTGTAAAGTCTAAGTTTGTTCCTCAAATGAGACAAATAT
* * *
1264150 GGATTCTACTAATGACT-TTCATTCTTTTTGTGATTTGGCAATATAAACACATTTTCCTCATTAG
251 GGATTCTACTAATGAATCTTCATTCTTTTTGTGATTTGGCACTATAAACACATTTTCCTCGTTAG
1264214 GA
316 GA
* * *
1264216 TATATGATATTAATGCTTTGCTTTCGCAACAAAGGCTTTCTTCCCACCGATTGTTGTAAAGTCTT
1 TACATGATATTAATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTGTTGTAAAGTC-T
* *
1264281 AAGTTCGTGCCTAAAATGAGACAAATGTGGATTCTAGTATTGATCATCATTCTTTTTGTGATAAG
65 AAGTTCGTGCCTCAAATGAGACAAACGTGGATTCTAGTATTGATCATCATTCTTTTTGTGATAAG
* *
1264346 GCACTATAAACACATTCTCCGCATTAGGATATATGATATTAATGCTTTGGTTTCGCAACAAAGGC
130 GCACTATAAACACATTCTCCTCATTAGGATACATGATATTAATGCTTTGGTTTCGCAACAAAGGC
* *
1264411 TTTCTTCCCACCGATTGTTGTAAAGTCTAAGTTTGTTCCTCAAATGAGACAAATATGGATTCTAG
195 TTTCTTCCCACCAATTGTTGTAAAGTCTAAGTTTGTTCCTCAAATGAGACAAATATGGATTCTAC
* * * *
1264476 TAA-CAATCTTCATTCTTTTTGTGATATGGCACTATGAACACATTCT-CTGCGTTAGGA
260 TAATGAATCTTCATTCTTTTTGTGATTTGGCACTATAAACACATTTTCCT-CGTTAGGA
* * * * ** ** ** ** * ** *
1264533 TA-ATTGACATTGACGTTTTTCTATT-GCATGAAATCCTTTTCTTTGC-CCAATTATCCTCAAAA
1 TACA-TGATATTAATGCTTTGGT-TTCGCAACAAAGGC-TTTCTTCCCACCAATTGTTGT-AAAG
** * * ** * * * * * * * **
1264595 TGAAAGTTCATCCCTTGAATAAGACAAGCCT-CACTTCT-GATAAT-AGTC-TCCACTCCTTTCA
62 TCTAAGTTCGTGCCTCAAATGAGACAAACGTGGA-TTCTAG-TATTGA-TCAT-CATTCTTTTTG
* ** * * ** * * * * * *
1264656 AGATTGGGAAGCCA-AAACAC-TT-TGCCTTTGTTCGGATAGC-CGACATTGATGCTTTGCTTTT
123 TGATAAGGCA-CTATAAACACATTCT-CC-TCATTAGGATA-CATGATATTAATGCTTTGGTTTC
* * ** * * * ** * * *
1264717 G-AATGGAAA-TCTTTTCTTTGC-CCAATTATCCT-TAAAATCAAAG-TTCATCCCCTGAATAAG
184 GCAA--CAAAGGC-TTTCTTCCCACCAATTGT--TGTAAAGTCTAAGTTTGTTCCTC-AAATGAG
** * * * ** * *** * * * *
1264777 ACAAGGATCGATTCTCCTAA-CAGGCTCCATTTCTTCCAAG-G-TTGGGAAGCCA-AAACATATT
243 ACAAATATGGATTCTACTAATGAATCTTCA-TTCTT-TTTGTGATTTGGCA-CTATAAACACATT
1264838 GCTT--TCGTTAGGA
305 --TTCCTCGTTAGGA
* * * * * * * * *
1264851 TACACGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTCCCACC-GTTTTTGATAGAA-T
1 TACATGATATTAATGCTTTGGTTTCGCAACAAAGGC-TTTCTTCCCACCAATTGTTG-TA-AAGT
* * * * * * * **
1264914 CAAAGGTTTTC-T-CCT-AAATAAGA-AAGACGTGAATACTCA-CACTAATCCCCATTCTTTTTA
63 CTAA-G--TTCGTGCCTCAAATGAGACAA-ACGTGGATTCT-AGTATTGATCATCATTCTTTTT-
* * * * * * * *
1264974 G-GGTTAGGCACCATAAACATAGTCTTCTCGTTAAGATACATGATATTGAA-GCTTTGGTTTCGC
122 GTGATAAGGCACTATAAACACATTCTCCTCATTAGGATACATGATATT-AATGCTTTGGTTTCGC
* * ** * * *
1265037 AACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGGTCCTGCCTCAAATGCGACAAACAT
186 AACAAAGGCTTTCTTCCCACCAATTGTTGTAAAGTCTAAGTTTGTTCCTCAAATGAGACAAATAT
* *
1265102 GGATTCTACTAATGACT-TTCATTCTTTTTGTGATTTGGCACTATAAACACATTTTCCTCATTAG
251 GGATTCTACTAATGAATCTTCATTCTTTTTGTGATTTGGCACTATAAACACATTTTCCTCGTTAG
1265166 GA
316 GA
* *
1265168 T-CTATGATATTAATGCTTTGCTTTCGCAACAAAGGCTTTCTTCCCACCGATTGTTGTAAAGTCT
1 TAC-ATGATATTAATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTGTTGTAAAGTC-
** * * *
1265232 TAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATAT
64 TAAGTTCGTGCCTCAAATGAGACAAACGTGGATTCTAGTATTGATCATCATTCTTTTTGTGATAA
* * * * * * ** **
1265297 GGCACTATGAACACAATATCCGCATTAGGATA-ATTGACATTGATAT-TTTTCCTTT-GCATGAA
129 GGCACTATAAACACATTCTCCTCATTAGGATACA-TGATATT-A-ATGCTTTGGTTTCGCAACAA
** ** * * * * ** * ** *
1265359 AACCTTTTCTTTGC-CCAATTATCCT-TAAAATCAAAGTTCT-TCCCTTGAATAAGACATGTATC
191 AGGC-TTTCTTCCCACCAATTGT--TGTAAAGTCTAAGTT-TGTTCCTCAAATGAGACAAATATG
* * * * * ** * * * *
1265421 AATTCTCCTAA-CAGTCTCCATT-TTTTTCAAGATTAGGAAGCCA-AAACAC-TTTGCCTTCGTT
252 GATTCTACTAATGAATCTTCATTCTTTTT-GTGATTTGGCA-CTATAAACACATTTTCC-TCGTT
1265482 AGGA
314 AGGA
* * * * ** * * * * * *
1265486 TGCACGACATTGATGCTTTGGGGTCACAAGAAAAGCATTTCTTCCCATC-GTTTTTGATAGAA-T
1 TACATGATATTAATGCTTTGGTTTCGCAACAAAGGC-TTTCTTCCCACCAATTGTTG-TA-AAGT
* * * * * * * * * * * *
1265549 CCAAGTT-TTTCTCTTACATAAGACTAACATGAATACTTACGCTAATG--C-CCATTCTTTTCTG
63 CTAAGTTCGTGC-CTCAAATGAGACAAACGTGGATTC-TA-G-TATTGATCATCATTCTTTT-TG
* * * * * * * * * *
1265610 -GGTTAGGTACCATAAATATAGTCTTCTCATTTGGATACATGATACTGAA-GCTTTGGTTTTC-C
123 TGATAAGGCACTATAAACACATTCTCCTCATTAGGATACATGATA-TTAATGCTTTGG-TTTCGC
* * * * * * *
1265672 ATCAAAGGCTTTCTTCCCACCAGTTATTGTAAAGTCTAA-TTTCATGCCTCAAATGTGACAAACA
186 AACAAAGGCTTTCTTCCCACCAATTGTTGTAAAGTCTAAGTTT-GTTCCTCAAATGAGACAAATA
* * * * *
1265736 TGGATTCTACTGATG-ATTTTCATTCTTTTTTTGATTTGGCACTATAAAAACATTTTCCTCTTTA
250 TGGATTCTACTAATGAATCTTCATTCTTTTTGTGATTTGGCACTATAAACACATTTTCCTCGTTA
1265800 GGA
315 GGA
* * *** *
1265803 AACATGATATTCATGCTTTGGTTTCATTATAAAGGCTTTCTTCCCACCAATTGTTGTAAAGTCTA
1 TACATGATATTAATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTGTTGTAAAGTCTA
* ** * * *
1265868 CGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATTTTTTTTTTGTGATAA
66 AGTTCGTGCCTCAAATGAGACAAACGTGGATTCTAGTATTGATCATCA--TTCTTTTTGTGATAA
* * * * * * ** * ** *
1265933 GGCACTATAAATATATTCTCCGCATTAGGATA-ATTGACATTGATGTTTTTCTTTTGCATTAATG
129 GGCACTATAAACACATTCTCCTCATTAGGATACA-TGATATTAATGCTTTGGTTTCGCAACAAAG
* ** * * ** ** * * * ** *
1265997 TCTTTTCTTTGC-CCAATTATCCT-TAAAATGAAAG-TTCATCCCCTGAATAAGACAAGCATCGA
193 GC-TTTCTTCCCACCAATTGT--TGTAAAGTCTAAGTTTGTTCCTC-AAATGAGACAAATATGGA
* * ** * *** * * * * **
1266059 TTCT-CGTAAT-AGTCTCCACACCTTTCAAGATTGGGAAGCCA-AAACACA-TTGCCTTCAATAG
254 TTCTAC-TAATGAATCTTCATTCTTTTTGTGATTTGGCA-CTATAAACACATTTTCC-TCGTTAG
1266120 GA
316 GA
* * * * * * * * * * *
1266122 TACACGACATTGATGCTTTGATGTCTCAAGAAAAGCTTTTCTTCTCGCC-ATTTTTGATAGAA-T
1 TACATGATATTAATGCTTTGGTTTCGCAACAAAGGC-TTTCTTCCCACCAATTGTTG-TA-AAGT
* * * * ** * * * *** ** *
1266185 CAAAGTTTGT-CTCTTAAATAAGA-AAGACACGAATACCCA--CCCGAATCCCCATTCTTTTCAG
63 CTAAGTTCGTGC-CTCAAATGAGACAA-ACGTGGAT-TCTAGTATTG-ATCATCATTCTTTT-TG
* * * * * * * *
1266246 -GATTAGGCTCCATAAACAAAGTCTTCTCAGGT-GGATACATGATTTTGAA-GCTTTGGTTTCGC
123 TGATAAGGCACTATAAACACATTCTCCTCA-TTAGGATACATGATATT-AATGCTTTGGTTTCGC
* * * *
1266308 AACAAAGGTTTTCTTCCCACCAATTGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAAGAT
186 AACAAAGGCTTTCTTCCCACCAATTGTTGTAAAGTCTAAGTTTGTTCCTCAAATGAGACAAATAT
* ** * ** * * * * * * *
1266373 GGATTCTAGTGTTG-ATCATCATTCTTTTTGTGATAAGGAAGTATAAATAGATTCTCCGCATTAG
251 GGATTCTACTAATGAATCTTCATTCTTTTTGTGATTTGGCACTATAAACACATTTTCCTCGTTAG
1266437 GA
316 GA
* * * ** * ** * ** * * *
1266439 TA-ATTGACATTGATGTTTTTCTTTGGCATGGAAA-TCTTTTCTTTGC-CCAATTATTCCTAAAA
1 TACA-TGATATTAATGCTTTGGTTTCGCA-ACAAAGGC-TTTCTTCCCACCAATTGTT-GTAAAG
** * * ** * * * * ** ** * *
1266501 TGAAAGTTCATCCCTTGATTAAGA-AAAGCATCGATTCTCCTA-ACAGTC-TCCTT-TTTTTCCA
62 TCTAAGTTCGTGCCTCAAATGAGACAAA-CGTGGATTCTAGTATTGA-TCATCATTCTTTTT--G
* ** * * * * * * * * **
1266562 AGATTGGGAAGCCA-AAACACATT-ACCTCCGTTAGGAAACACGACATTGATGCTTTGGTGCCGC
123 TGATAAGGCA-CTATAAACACATTCTCCT-CATTAGGATACATGATATTAATGCTTTGGTTTCGC
* * *** * * * * * *
1266625 AAGAAAAGCTTTTCTTCCTGTC-GTTTTTG-AGAGAATCAAAGTTTG-TCTCTTAAATAAGACAA
186 AACAAAGGC-TTTCTTCCCACCAATTGTTGTA-A-AGTCTAAGTTTGTTC-CTCAAATGAGACAA
* * * * ** * * * * * *
1266687 ACATGAATACTCAC-ACT-AATCCCCAATCTTTTTAG-GGTTAGGCACCAT-AACATAGTCTT-C
247 ATATGGATTCT-ACTAATGAATCTTCATTCTTTTT-GTGATTTGGCACTATAAACACA-TTTTCC
1266747 TCGTTAGGA
309 TCGTTAGGA
* * * * * *
1266756 TACATGATATTGAAT-CTTTGGTTTTGCAACAAAGGCTTCCCTCCCACCAGTTTTTGAAAAGTCT
1 TACATGATATT-AATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTGTTGTAAAGTCT
* * * * * * ** * *
1266820 AAGTTTTCATGCCTCAAATGCGACAAACATGGATTCT-CTAATAATTTTCATTCTTTTTTTGATT
65 AAG--TTCGTGCCTCAAATGAGACAAACGTGGATTCTAGTATTGATCATCATTCTTTTTGTGATA
* * * * * *
1266884 TGGCACTATAAACACTTTTTCCTCATTAGGATACATGATATTCATGCTTTGATTTGGCAACAAAG
128 AGGCACTATAAACACATTCTCCTCATTAGGATACATGATATTAATGCTTTGGTTTCGCAACAAAG
* * *
1266949 GCTTTCTTCCCACCAATTGTTATAAAGTCTAAGTTGGTGCCTCAAATGAGACAAATATGGATTCT
193 GCTTTCTTCCCACCAATTGTTGTAAAGTCTAAGTTTGTTCCTCAAATGAGACAAATATGGATTCT
* * * * * * * *
1267014 AGTAATG-ATCTCCAATCTTTTTGTGATATGGCACTATAAACACAATCTCCTCATTACGA
258 ACTAATGAATCTTCATTCTTTTTGTGATTTGGCACTATAAACACATTTTCCTCGTTAGGA
* * * * ** * ** ** * * * *
1267073 TAAAAGACATTGAA-GTTTTTCTTTTGCATGAAAATCTTTTCTTTCC-CCTATT-TTCCTTAAAA
1 TACATGATATT-AATGCTTTGGTTTCGCAACAAAGGC-TTTCTTCCCACCAATTGTT--GTAAAG
** * * ** * * * * * ** *
1267135 TGAAAGTTCTTCCCTTGAATAAGACAAGCATCGATTCTCCA-AACAG-TC-TCCATT-TTTTTCA
62 TCTAAGTTCGTGCCTCAAATGAGACAAACGTGGATTCT--AGTATTGATCAT-CATTCTTTTT-G
* ** * * * * * * * *
1267196 AGATTGGGAAGCCA-AAACACATTGC-CTTCTTTAGGATGCATGACATTAATGCTTTAGG-GTCA
123 TGATAAGGCA-CTATAAACACATT-CTCCTCATTAGGATACATGATATTAATGCTTT-GGTTTCG
* * * * * * *
1267258 CAA-AGAAAGCTTTTCTTCCCGCC-GTTTTTGATAGAA-TCCAAGTTT-TTCTCTTAAATAAGAC
185 CAACA-AAGGC-TTTCTTCCCACCAATTGTTG-TA-AAGTCTAAGTTTGTTC-CTCAAATGAGAC
* * * * * ** * * * * * * *
1267319 TAACATGAATACTCAC-ACT-AATCCCCATTCTTTTCTG-GGTTAGGTACCATAAATATAGTCTT
245 AAATATGGATTCT-ACTAATGAATCTTCATTCTTTT-TGTGATTTGGCACTATAAACACA-TTTT
*
1267381 -CTCATTAGGA
307 CCTCGTTAGGA
* * * * * * *
1267391 TACATCATACTGAA-GCATTGG-TCCTGCAACAAAGGCTTTCTTCCAACCAGTTTTTGTAAAGTC
1 TACATGATA-TTAATGCTTTGGTTTC-GCAACAAAGGCTTTCTTCCCACCAATTGTTGTAAAGTC
* * * * ** *
1267454 TAAGTTCATGACTCAAATGCGACAAACATGGATTCTAGTGA-TGATTTTCATTCTTTTTGTGATT
64 TAAGTTCGTGCCTCAAATGAGACAAACGTGGATTCTAGT-ATTGATCATCATTCTTTTTGTGATA
* * * * *
1267518 TGGCACAATAAACACATTTTCCTCATTAGGATACATGATATTAATGCTTTGGCTTCACAACAAAG
128 AGGCACTATAAACACATTCTCCTCATTAGGATACATGATATTAATGCTTTGGTTTCGCAACAAAG
* * * *
1267583 GCTTTCTTCCAACCAATTGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGATAAATATGGATTCT
193 GCTTTCTTCCCACCAATTGTTGTAAAGTCTAAGTTTGTTCCTCAAATGAGACAAATATGGATTCT
* **
1267648 ACTAATG-ATTTTCATTCTTTACGTGATTTGGCACTATAAA
258 ACTAATGAATCTTCATTCTTTTTGTGATTTGGCACTATAAA
1267688 GGCTTTTTTC
Statistics
Matches: 3389, Mismatches: 1048, Indels: 597
0.67 0.21 0.12
Matches are distributed among these distances:
310 154 0.05
312 1 0.00
313 5 0.00
314 10 0.00
315 149 0.04
316 592 0.17
317 1274 0.38
318 920 0.27
319 193 0.06
320 53 0.02
321 38 0.01
ACGTcount: A:0.29, C:0.20, G:0.16, T:0.36
Consensus pattern (317 bp):
TACATGATATTAATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTGTTGTAAAGTCTA
AGTTCGTGCCTCAAATGAGACAAACGTGGATTCTAGTATTGATCATCATTCTTTTTGTGATAAGG
CACTATAAACACATTCTCCTCATTAGGATACATGATATTAATGCTTTGGTTTCGCAACAAAGGCT
TTCTTCCCACCAATTGTTGTAAAGTCTAAGTTTGTTCCTCAAATGAGACAAATATGGATTCTACT
AATGAATCTTCATTCTTTTTGTGATTTGGCACTATAAACACATTTTCCTCGTTAGGA
Found at i:1265824 original size:952 final size:950
Alignment explanation
Indices: 1263105--1265528 Score: 3137
Period size: 952 Copynumber: 2.5 Consensus size: 950
1263095 TCCTCTTTAG
* * * *
1263105 GATACATGATATT-AATGCTTTGGTTTTGTAACAAAGGCTTTCTTCCCATCAATTGTTGTAAAGT
1 GATACATGATATTGAA-GCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGT
* * ** * * * * *
1263169 ATAAGTTTGTGCCTCAAATGAGACCAATATGGATTCTACTAGTGATTTTCATTCTTTTTGTGATT
65 CTAAGGTCCTGCCTCAAATGCGACAAACATGGATTCTACTAATGACTTTCATTCTTTTTGTGATT
* * * * * * * * *
1263234 TGGCACTATAAAAAGATTTTACTCTTTAGGATACATGATATTAATGCTTTGGTTTGGTAACAAAG
130 TGGCAATATAAACACATTTTCCTCATTAGGATATATGATATTAATGCTTTGCTTTCGCAACAAAG
* * * * *
1263299 GCTTTCTTCCCCCCAATTGTTGTAAAGTC-TAAGTTCGTGTCTCAAATGAGACAAATGTGGATTC
195 GCTTTCTTCCCACCGATTGTTGTAAAGTCTTAAGTTCGTGCCTAAAATGAGACAAATATGGATTC
* * *
1263363 TAGTATTGATCATCATTCTTTTTGTGATAAGGCACTATAAACACATTCTCCGCATTAGGATATAT
260 TAGTAATGATCATCATTCTTTTTGTGATAAGGCACTATAAACACAATATCCGCATTAGGATATAT
* ** ** * * * *
1263428 GATATTAATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCGATTGTTGTAAAGTCTAAGTTT
325 GACATTAATGCTTTCCTTTCGCAACAAAACCTTTCTTCCCACCAATTATTGTAAAATCAAAGTTT
* * ** * * ** * *
1263493 GTTCCTCAAATGAGACAAATATGGATTCTAGTAACAATCTTCATTCTTTTTGTGATATGGCACTA
390 GTCCCTCAAATAAGACAAATATCAATTCTACTAACAATCTCCATTCTTTTTAAGATATGGAACCA
* * * * * * ** * *
1263558 TGAACACATTCTCTGCGTTAGGATATTTGACATTGACGTTTTTCTATTGCATGAAAACCTTTTCT
455 TAAACACATTCTCTGCGTTAGGATAATCGACATTGACGCTTTGCGATCACAAGAAAACCATTTCT
* * * *
1263623 TTGCCCAATTATCCTCGAAATGAAAGTTCATCCCTTGAATAAGACAAGCCTCACTTCTGATAGTA
520 TTGCCCAATTATCCTCAAAATCAAAGTTCATCCCTTGAATAAGACAAGCATCACTTCTGATAATA
* * * *
1263688 GTCTCCACTCCTTTCAAGATTGGGAAGCCAAAACACTTTGCCTTTGTTCGGATAGCCGACATTGA
585 GTCTCCACTCCTTTCAAGATTAGGAAGCCAAAACAC-TAGCCTTTATTCGGATAGCCGACACTGA
* * * * **
1263753 TGCTTTGCTTTTGAATGGAAATCTTTTCTTTGCCCAATTATCCTTAAAATCAAAGTTCATCCCCT
649 AGCTTTGCTTTTCAATGCAAAGCTTTTCTTCCCCCAATTAT-CTTAAAATCAAAGTTCATCCCCT
* ** * * * * *
1263818 GAATAAGACAAGGATTGATTCTCCTAACAGGCTCCATTTTTTCCAAGGTTGGGAAGCCAAAACAT
713 AAATAAGACAAACATCGATTCTACTAACAGGCTCCATTTCTTCCAAGGTTGGCAAGCAAAAACAT
* * *
1263883 ATTGCTTTCGTTAGGATACACGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTCCCGCC
778 ATTGCTCTCGTTAGGATACACGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTCCCACC
1263948 GTTTTTGATAGAATCAAAGGTTTTCTCCTAAATAAGAAAGACGTGAATACTCAAACTAATCCCCA
843 GTTTTTGATAGAATCAAAGGTTTTCTCCTAAATAAGAAAGACGTGAATACTCAAACTAATCCCCA
* *
1264013 TTCTTTTTGGGGTTAGGCATCATAAACATAGTCTTCTCGTTAA
908 TTCTTTTTAGGGTTAGGCACCATAAACATAGTCTTCTCGTTAA
1264056 GATACATGATATTGAAGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTC
1 GATACATGATATTGAAGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTC
1264121 TAAGGTCCTGCCTCAAATGCGACAAACATGGATTCTACTAATGACTTTCATTCTTTTTGTGATTT
66 TAAGGTCCTGCCTCAAATGCGACAAACATGGATTCTACTAATGACTTTCATTCTTTTTGTGATTT
1264186 GGCAATATAAACACATTTTCCTCATTAGGATATATGATATTAATGCTTTGCTTTCGCAACAAAGG
131 GGCAATATAAACACATTTTCCTCATTAGGATATATGATATTAATGCTTTGCTTTCGCAACAAAGG
*
1264251 CTTTCTTCCCACCGATTGTTGTAAAGTCTTAAGTTCGTGCCTAAAATGAGACAAATGTGGATTCT
196 CTTTCTTCCCACCGATTGTTGTAAAGTCTTAAGTTCGTGCCTAAAATGAGACAAATATGGATTCT
* * *
1264316 AGTATTGATCATCATTCTTTTTGTGATAAGGCACTATAAACACATTCTCCGCATTAGGATATATG
261 AGTAATGATCATCATTCTTTTTGTGATAAGGCACTATAAACACAATATCCGCATTAGGATATATG
* ** ** * * * *
1264381 ATATTAATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCGATTGTTGTAAAGTCTAAGTTTG
326 ACATTAATGCTTTCCTTTCGCAACAAAACCTTTCTTCCCACCAATTATTGTAAAATCAAAGTTTG
* * ** * * ** * *
1264446 TTCCTCAAATGAGACAAATATGGATTCTAGTAACAATCTTCATTCTTTTTGTGATATGGCACTAT
391 TCCCTCAAATAAGACAAATATCAATTCTACTAACAATCTCCATTCTTTTTAAGATATGGAACCAT
* * * * * ** * * *
1264511 GAACACATTCTCTGCGTTAGGATAATTGACATTGACGTTTTTCTATTGCATGAAATCCTTTTCTT
456 AAACACATTCTCTGCGTTAGGATAATCGACATTGACGCTTTGCGATCACAAGAAAACCATTTCTT
* *
1264576 TGCCCAATTATCCTCAAAATGAAAGTTCATCCCTTGAATAAGACAAGCCTCACTTCTGATAATAG
521 TGCCCAATTATCCTCAAAATCAAAGTTCATCCCTTGAATAAGACAAGCATCACTTCTGATAATAG
* * * * *
1264641 TCTCCACTCCTTTCAAGATTGGGAAGCCAAAACACTTTGCCTTTGTTCGGATAGCCGACATTGAT
586 TCTCCACTCCTTTCAAGATTAGGAAGCCAAAACAC-TAGCCTTTATTCGGATAGCCGACACTGAA
* * * ** *
1264706 GCTTTGCTTTTGAATGGAAATCTTTTCTTTGCCCAATTATCCTTAAAATCAAAGTTCATCCCCTG
650 GCTTTGCTTTTCAATGCAAAGCTTTTCTTCCCCCAATTAT-CTTAAAATCAAAGTTCATCCCCTA
** * * *
1264771 AATAAGACAAGGATCGATTCTCCTAACAGGCTCCATTTCTTCCAAGGTTGGGAAGCCAAAACATA
714 AATAAGACAAACATCGATTCTACTAACAGGCTCCATTTCTTCCAAGGTTGGCAAGCAAAAACATA
*
1264836 TTGCTTTCGTTAGGATACACGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTCCCACCG
779 TTGCTCTCGTTAGGATACACGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTCCCACCG
*
1264901 TTTTTGATAGAATCAAAGGTTTTCTCCTAAATAAGAAAGACGTGAATACTCACACTAATCCCCAT
844 TTTTTGATAGAATCAAAGGTTTTCTCCTAAATAAGAAAGACGTGAATACTCAAACTAATCCCCAT
1264966 TCTTTTTAGGGTTAGGCACCATAAACATAGTCTTCTCGTTAA
909 TCTTTTTAGGGTTAGGCACCATAAACATAGTCTTCTCGTTAA
1265008 GATACATGATATTGAAGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTC
1 GATACATGATATTGAAGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTC
1265073 TAAGGTCCTGCCTCAAATGCGACAAACATGGATTCTACTAATGACTTTCATTCTTTTTGTGATTT
66 TAAGGTCCTGCCTCAAATGCGACAAACATGGATTCTACTAATGACTTTCATTCTTTTTGTGATTT
* *
1265138 GGCACTATAAACACATTTTCCTCATTAGGATCTATGATATTAATGCTTTGCTTTCGCAACAAAGG
131 GGCAATATAAACACATTTTCCTCATTAGGATATATGATATTAATGCTTTGCTTTCGCAACAAAGG
*
1265203 CTTTCTTCCCACCGATTGTTGTAAAGTCTTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCT
196 CTTTCTTCCCACCGATTGTTGTAAAGTCTTAAGTTCGTGCCTAAAATGAGACAAATATGGATTCT
* * *
1265268 AGTAATGATCTTCATTCTTTTTGTGATATGGCACTATGAACACAATATCCGCATTAGGATA-ATT
261 AGTAATGATCATCATTCTTTTTGTGATAAGGCACTATAAACACAATATCCGCATTAGGATATA-T
* ** **
1265332 GACATTGATAT-TTTTCCTTT-GCATGAAAACCTTTTCTTTGC-CCAATTATCCT-TAAAATCAA
325 GACATT-A-ATGCTTTCCTTTCGCAACAAAACC-TTTCTTCCCACCAATTAT--TGTAAAATCAA
** ** * *
1265393 AGTTCT-TCCCTTGAATAAGACATGTATCAATTCTCCTAACAGTCTCCATT-TTTTTCAAGAT-T
385 AGTT-TGTCCCTCAAATAAGACAAATATCAATTCTACTAACAATCTCCATTCTTTTT-AAGATAT
* * * * * *
1265455 AGGAAGCCA-AAACACTTTGC-CTTCGTTAGGATGCA-CGACATTGATGCTTTGGGGTCACAAGA
448 -GGAA-CCATAAACACATT-CTCTGCGTTAGGAT-AATCGACATTGACGCTTTGCGATCACAAGA
*
1265517 AAAGCATTTCTT
509 AAACCATTTCTT
1265529 CCCATCGTTT
Statistics
Matches: 1365, Mismatches: 94, Indels: 26
0.92 0.06 0.02
Matches are distributed among these distances:
951 197 0.14
952 1053 0.77
953 107 0.08
954 8 0.01
ACGTcount: A:0.29, C:0.20, G:0.16, T:0.35
Consensus pattern (950 bp):
GATACATGATATTGAAGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTC
TAAGGTCCTGCCTCAAATGCGACAAACATGGATTCTACTAATGACTTTCATTCTTTTTGTGATTT
GGCAATATAAACACATTTTCCTCATTAGGATATATGATATTAATGCTTTGCTTTCGCAACAAAGG
CTTTCTTCCCACCGATTGTTGTAAAGTCTTAAGTTCGTGCCTAAAATGAGACAAATATGGATTCT
AGTAATGATCATCATTCTTTTTGTGATAAGGCACTATAAACACAATATCCGCATTAGGATATATG
ACATTAATGCTTTCCTTTCGCAACAAAACCTTTCTTCCCACCAATTATTGTAAAATCAAAGTTTG
TCCCTCAAATAAGACAAATATCAATTCTACTAACAATCTCCATTCTTTTTAAGATATGGAACCAT
AAACACATTCTCTGCGTTAGGATAATCGACATTGACGCTTTGCGATCACAAGAAAACCATTTCTT
TGCCCAATTATCCTCAAAATCAAAGTTCATCCCTTGAATAAGACAAGCATCACTTCTGATAATAG
TCTCCACTCCTTTCAAGATTAGGAAGCCAAAACACTAGCCTTTATTCGGATAGCCGACACTGAAG
CTTTGCTTTTCAATGCAAAGCTTTTCTTCCCCCAATTATCTTAAAATCAAAGTTCATCCCCTAAA
TAAGACAAACATCGATTCTACTAACAGGCTCCATTTCTTCCAAGGTTGGCAAGCAAAAACATATT
GCTCTCGTTAGGATACACGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTCCCACCGTT
TTTGATAGAATCAAAGGTTTTCTCCTAAATAAGAAAGACGTGAATACTCAAACTAATCCCCATTC
TTTTTAGGGTTAGGCACCATAAACATAGTCTTCTCGTTAA
Found at i:1266242 original size:636 final size:634
Alignment explanation
Indices: 1264714--1266406 Score: 2354
Period size: 635 Copynumber: 2.7 Consensus size: 634
1264704 ATGCTTTGCT
* *
1264714 TTTGAATGGAAATCTTTTCTTTGCCCAATTATCCTTAAAATCAAAGTTCATCCCCTGAATAAGAC
1 TTTGCATGAAAATCTTTTCTTTGCCCAATTATCCTTAAAATCAAAGTTCATCCCCTGAATAAGAC
* * * * * *
1264779 AAGGATCGATTCTCCTAACAGGCTCCATTTCTTCCAAGGTTGGGAAGCCAAAACATATTGCTTTC
66 AAGCATCGATTCTCCTAACAGTCTCCATTTCTTTCAAGATTGGGAAGCCAAAACACATTGCCTTC
1264844 GTTAGGATACACGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTCCCACCGTTTTTGAT
131 GTTAGGATACACGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTCCCACCGTTTTTGAT
* *
1264909 AGAATCAAAGGTTTTCTCCTAAATAAGAAAGACGTGAATACTCACACTAATCCCCATTCTTTT-T
196 AGAATCAAA-GTTTTCTCTTAAATAAGAAAGACATGAATACTCACACTAATCCCCATTCTTTTCT
* * **
1264973 AGGGTTAGGCACCATAAACATAGTCTTCTCGTTAAGATACATGATATTGAAGCTTTGGTTTCGCA
260 -GGGTTAGGTACCATAAACATAGTCTTCTCATTTGGATACATGATATTGAAGCTTTGGTTTCGCA
* * * *
1265038 ACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGGTCCTGCCTCAAATGCGACAAACATG
324 ACAAAGGCTTTCTTCCCACCAATTATTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATG
* * *
1265103 GATTCTACTAATGACTTTCATTCTTTTTGTGATTTGGCACTATAAACACATTTTCCTCATTAGGA
389 GATTCTACTGATGATTTTCATTCTTTTTGTGATTTGGCACTATAAAAACATTTTCCTCATTAGGA
* * *
1265168 TCTATGATATTAATGCTTTGCTTTCGCAACAAAGGCTTTCTTCCCACCGATTGTTGTAAAGTCTT
454 ACTATGATATTAATGCTTTGCTTTCACAACAAAGGCTTTCTTCCCACCAATTGTTGTAAAGTCTT
*
1265233 AAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATATG
519 AAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATAAG
*
1265298 GCACTATGAACACAATATCCGCATTAGGATAATTGACATTGATATTTTTCC
584 GCACTATAAACACAATATCCGCATTAGGATAATTGACATTGATATTTTTCC
* * *
1265349 TTTGCATGAAAACCTTTTCTTTGCCCAATTATCCTTAAAATCAAAGTTCTTCCCTTGAATAAGAC
1 TTTGCATGAAAATCTTTTCTTTGCCCAATTATCCTTAAAATCAAAGTTCATCCCCTGAATAAGAC
* * * * * *
1265414 ATGTATCAATTCTCCTAACAGTCTCCATTTTTTTCAAGATTAGGAAGCCAAAACACTTTGCCTTC
66 AAGCATCGATTCTCCTAACAGTCTCCATTTCTTTCAAGATTGGGAAGCCAAAACACATTGCCTTC
* * * *
1265479 GTTAGGATGCACGACATTGATGCTTTGGGGTCACAAGAAAAGCATTTCTTCCCATCGTTTTTGAT
131 GTTAGGATACACGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTCCCACCGTTTTTGAT
* * * * * *
1265544 AGAATCCAAGTTTTTCTCTTACATAAGACTA-ACATGAATACTTACGCTAATGCCCATTCTTTTC
196 AGAATCAAAG-TTTTCTCTTAAATAAGA-AAGACATGAATACTCACACTAATCCCCATTCTTTTC
* *
1265608 TGGGTTAGGTACCATAAATATAGTCTTCTCATTTGGATACATGATACTGAAGCTTTGGTTTTC-C
259 TGGGTTAGGTACCATAAACATAGTCTTCTCATTTGGATACATGATATTGAAGCTTTGG-TTTCGC
* * * *
1265672 ATCAAAGGCTTTCTTCCCACCAGTTATTGTAAAGTCTAATTTCATGCCTCAAATGTGACAAACAT
323 AACAAAGGCTTTCTTCCCACCAATTATTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACAT
* *
1265737 GGATTCTACTGATGATTTTCATTCTTTTTTTGATTTGGCACTATAAAAACATTTTCCTCTTTAGG
388 GGATTCTACTGATGATTTTCATTCTTTTTGTGATTTGGCACTATAAAAACATTTTCCTCATTAGG
* * ** *
1265802 AAAC-ATGATATTCATGCTTTGGTTTCATTATAAAGGCTTTCTTCCCACCAATTGTTGTAAAGTC
453 -AACTATGATATTAATGCTTTGCTTTCACAACAAAGGCTTTCTTCCCACCAATTGTTGTAAAGTC
* *
1265866 -TACGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATTTTTTTTTTGTGA
517 TTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCA--TTCTTTTTGTGA
* * * * * *
1265930 TAAGGCACTATAAATATATTCTCCGCATTAGGATAATTGACATTGATGTTTTTCT
580 TAAGGCACTATAAACACAATATCCGCATTAGGATAATTGACATTGATATTTTTCC
* ** *
1265985 TTTGCATTAATGTCTTTTCTTTGCCCAATTATCCTTAAAATGAAAGTTCATCCCCTGAATAAGAC
1 TTTGCATGAAAATCTTTTCTTTGCCCAATTATCCTTAAAATCAAAGTTCATCCCCTGAATAAGAC
* * ***
1266050 AAGCATCGATTCTCGTAATAGTCTCCACACCTTTCAAGATTGGGAAGCCAAAACACATTGCCTTC
66 AAGCATCGATTCTCCTAACAGTCTCCATTTCTTTCAAGATTGGGAAGCCAAAACACATTGCCTTC
** * * * * *
1266115 AATAGGATACACGACATTGATGCTTTGATGTCTCAAGAAAAGCTTTTCTTCTCGCCATTTTTGAT
131 GTTAGGATACACGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTCCCACCGTTTTTGAT
* * * * *
1266180 AGAATCAAAGTTTGTCTCTTAAATAAGAAAGACACGAATACCCACCCGAATCCCCATTCTTTTCA
196 AGAATCAAAGTTT-TCTCTTAAATAAGAAAGACATGAATACTCACACTAATCCCCATTCTTTTCT
* * ** *
1266245 GGATTAGGCT-CCATAAACAAAGTCTTCTCAGGTGGATACATGATTTTGAAGCTTTGGTTTCGCA
260 GGGTTAGG-TACCATAAACATAGTCTTCTCATTTGGATACATGATATTGAAGCTTTGGTTTCGCA
* * * *
1266309 ACAAAGGTTTTCTTCCCACCAATTGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAAGATG
324 ACAAAGGCTTTCTTCCCACCAATTATTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATG
* * **
1266374 GATTCTAGTGTTGATCATCATTCTTTTTGTGAT
389 GATTCTACTGATGATTTTCATTCTTTTTGTGAT
1266407 AAGGAAGTAT
Statistics
Matches: 924, Mismatches: 123, Indels: 21
0.87 0.12 0.02
Matches are distributed among these distances:
634 50 0.05
635 457 0.49
636 416 0.45
637 1 0.00
ACGTcount: A:0.29, C:0.20, G:0.15, T:0.36
Consensus pattern (634 bp):
TTTGCATGAAAATCTTTTCTTTGCCCAATTATCCTTAAAATCAAAGTTCATCCCCTGAATAAGAC
AAGCATCGATTCTCCTAACAGTCTCCATTTCTTTCAAGATTGGGAAGCCAAAACACATTGCCTTC
GTTAGGATACACGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTCCCACCGTTTTTGAT
AGAATCAAAGTTTTCTCTTAAATAAGAAAGACATGAATACTCACACTAATCCCCATTCTTTTCTG
GGTTAGGTACCATAAACATAGTCTTCTCATTTGGATACATGATATTGAAGCTTTGGTTTCGCAAC
AAAGGCTTTCTTCCCACCAATTATTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGA
TTCTACTGATGATTTTCATTCTTTTTGTGATTTGGCACTATAAAAACATTTTCCTCATTAGGAAC
TATGATATTAATGCTTTGCTTTCACAACAAAGGCTTTCTTCCCACCAATTGTTGTAAAGTCTTAA
GTTCGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATAAGGC
ACTATAAACACAATATCCGCATTAGGATAATTGACATTGATATTTTTCC
Found at i:1266558 original size:636 final size:632
Alignment explanation
Indices: 1264372--1266538 Score: 2236
Period size: 635 Copynumber: 3.4 Consensus size: 632
1264362 CTCCGCATTA
* *
1264372 GGATATATGATATT-AATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCGATTGTTGTAAAG
1 GGATACATGATATTGAA-GCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTGTTGTAAAG
* * * * **
1264436 TCTAAGTTTGTTCCTCAAATGAGACAAATATGGATTCTAGTAACAATCTTCATTCTTTTTGTGAT
65 TCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTACTAATGATCTTCATTCTTTTTGTGAT
* * * * * *
1264501 ATGGCACTATGAACACATTCTCTGCGTTAGGATAATTGACATTGACGTTTTTCTATTGCAT-GAA
130 ATGGCACTATAAACACATTCTCCGCATTAGGATAATTGACATTGATGCTTTGCT-TTGCATAGAA
** ** * ** * *
1264565 ATCCTTTTCTTTGC-CCAATTATCCTCAAAATGAAAGTTCATCCCTTGAATAAGACAAGCCTC-A
194 AGGC-TTTCTTCCCACCAATTATTCT-AAAATGAAAGTTCATCCCTCAAATAAGACAAACATCGA
* * *** ** * * **
1264628 CTTCT-GATAATAG-TCTCCACTCCTTTCAAGATTGGGAAGCCA-AAACACT-TTGCCTTTG--T
257 -TTCTAG-TAA-AGATCTCCATTCTTTTTGTGATAAGGCA-CTATAAACA-TATT--CTCCGCAT
* *** * * *
1264687 TCGGATAGCCGACATTGATGCTTTGCTTTTGAATGGAAATCTTTTCTTTGCCCAATTATCCTTAA
315 TAGGATAATTGACATTGATGTTTTTCTTTTGCAT-GAAATCTTTTCTTTGCCCAATTATCCTTAA
* * *
1264752 AATCAAAGTTCATCCCCTGAATAAGACAAGGATCGATTCTCCTAACAGGCTCCATTTCTTCCAAG
379 AATCAAAGTTCATCCCCTGAATAAGACAAGCATCGATTCTCCTAACAGTCTCCATTTCTTTCAAG
* * *
1264817 GTTGGGAAGCCAAAACATATTGCTTTCGTTAGGATACACGACATTGATGCTTTGGTGTCACAAGA
444 ATTGGGAAGCCAAAACACATTGCCTTCGTTAGGATACACGACATTGATGCTTTGGTGTCACAAGA
* *
1264882 AAAGCTTTTCTTCCCACCGTTTTTGATAGAATCAAAGGTTTTCTCCTAAATAAGAAAGACGTGAA
509 AAAGCTTTTCTTCCCACCGTTTTTGATAGAATCAAA-GTTTTCTCTTAAATAAGAAAGACATGAA
* *
1264947 TACTCACACTAATCCCCATTCTTTTTAGGGTTAGGCACCATAAACATAGTCTTCTC-GTT
573 TACTCACACTAATCCCCATTCTTTTCAGGGTTAGGCTCCATAAACATAGTCTTCTCAGTT
* *
1265006 AAGATACATGATATTGAAGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTTTTGTAAAG
1 -GGATACATGATATTGAAGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTGTTGTAAAG
* * *
1265071 TCTAAGGTCCTGCCTCAAATGCGACAAACATGGATTCTACTAATGA-CTTTCATTCTTTTTGTGA
65 TCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTACTAATGATC-TTCATTCTTTTTGTGA
* * * * * * *
1265135 TTTGGCACTATAAACACATTTTCCTCATTAGGAT-CTATGATATTAATGCTTTGCTTTCGCA-AC
129 TATGGCACTATAAACACATTCTCCGCATTAGGATAAT-TGACATTGATGCTTTGCTTT-GCATAG
* * * * ** * * * * *
1265198 AAAGGCTTTCTTCCCACCGATTGTTGTAAAGTCTTAAGTTCGTGCCTCAAATGAGACAAATATGG
192 AAAGGCTTTCTTCCCACCAATTATTCTAAAAT-GAAAGTTCATCCCTCAAATAAGACAAACATCG
* * * * * * *
1265263 ATTCTAGTAATGATCTTCATTCTTTTTGTGATATGGCACTATGAACACAATATCCGCATTAGGAT
256 ATTCTAGTAAAGATCTCCATTCTTTTTGTGATAAGGCACTATAAACATATTCTCCGCATTAGGAT
* * *
1265328 AATTGACATTGATATTTTTCCTTTGCATGAAAACCTTTTCTTTGCCCAATTATCCTTAAAATCAA
321 AATTGACATTGATGTTTTTCTTTTGCATG-AAATCTTTTCTTTGCCCAATTATCCTTAAAATCAA
* * * * * * *
1265393 AGTTCTTCCCTTGAATAAGACATGTATCAATTCTCCTAACAGTCTCCATTTTTTTCAAGATTAGG
385 AGTTCATCCCCTGAATAAGACAAGCATCGATTCTCCTAACAGTCTCCATTTCTTTCAAGATTGGG
* * * *
1265458 AAGCCAAAACACTTTGCCTTCGTTAGGATGCACGACATTGATGCTTTGGGGTCACAAGAAAAGCA
450 AAGCCAAAACACATTGCCTTCGTTAGGATACACGACATTGATGCTTTGGTGTCACAAGAAAAGCT
* * * * *
1265523 TTTCTTCCCATCGTTTTTGATAGAATCCAAGTTTTTCTCTTACATAAGACTA-ACATGAATACTT
515 TTTCTTCCCACCGTTTTTGATAGAATCAAAG-TTTTCTCTTAAATAAGA-AAGACATGAATACTC
* * * * *
1265587 ACGCTAATGCCCATTCTTTTCTGGGTTAGG-TACCATAAATATAGTCTTCTCATTT
578 ACACTAATCCCCATTCTTTTCAGGGTTAGGCT-CCATAAACATAGTCTTCTCAGTT
* * * *
1265642 GGATACATGATACTGAAGCTTTGGTTTTC-CATCAAAGGCTTTCTTCCCACCAGTTATTGTAAAG
1 GGATACATGATATTGAAGCTTTGG-TTTCGCAACAAAGGCTTTCTTCCCACCAATTGTTGTAAAG
* * * * * *
1265706 TCTAATTTCATGCCTCAAATGTGACAAACATGGATTCTACTGATGATTTTCATTCTTTTTTTGAT
65 TCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTACTAATGATCTTCATTCTTTTTGTGAT
* * * * * * * * * *
1265771 TTGGCACTATAAAAACATTTTCCTCTTTAGGA-AACATGATATTCATGCTTTGGTTT-CATTATA
130 ATGGCACTATAAACACATTCTCCGCATTAGGATAA-TTGACATTGATGCTTTGCTTTGCA-TAGA
* * * ** * * * * * *
1265834 AAGGCTTTCTTCCCACCAATTGTTGTAAAGTCTACGTTCGTGCCTCAAATGAGACAAATATGGAT
193 AAGGCTTTCTTCCCACCAATTATTCTAAAATGAAAGTTCATCCCTCAAATAAGACAAACATCGAT
* * * *
1265899 TCTAGTAATGATCTTCATTTTTTTTTTGTGATAAGGCACTATAAATATATTCTCCGCATTAGGAT
258 TCTAGTAAAGATCTCCA--TTCTTTTTGTGATAAGGCACTATAAACATATTCTCCGCATTAGGAT
* * *
1265964 AATTGACATTGATGTTTTTCTTTTGCATTAATGTCTTTTCTTTGCCCAATTATCCTTAAAATGAA
321 AATTGACATTGATGTTTTTCTTTTGCATGAA-ATCTTTTCTTTGCCCAATTATCCTTAAAATCAA
* * ***
1266029 AGTTCATCCCCTGAATAAGACAAGCATCGATTCTCGTAATAGTCTCCACACCTTTCAAGATTGGG
385 AGTTCATCCCCTGAATAAGACAAGCATCGATTCTCCTAACAGTCTCCATTTCTTTCAAGATTGGG
** * *
1266094 AAGCCAAAACACATTGCCTTCAATAGGATACACGACATTGATGCTTTGATGTCTCAAGAAAAGCT
450 AAGCCAAAACACATTGCCTTCGTTAGGATACACGACATTGATGCTTTGGTGTCACAAGAAAAGCT
* * * * *
1266159 TTTCTTCTCGCCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAAAGACACGAATACCCA
515 TTTCTTCCCACCGTTTTTGATAGAATCAAAGTTT-TCTCTTAAATAAGAAAGACATGAATACTCA
* * * * *
1266224 CCCGAATCCCCATTCTTTTCAGGATTAGGCTCCATAAACAAAGTCTTCTCAGGT
579 CACTAATCCCCATTCTTTTCAGGGTTAGGCTCCATAAACATAGTCTTCTCAGTT
* *
1266278 GGATACATGATTTTGAAGCTTTGGTTTCGCAACAAAGGTTTTCTTCCCACCAATTGTTGTAAAGT
1 GGATACATGATATTGAAGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTGTTGTAAAGT
* * ** *
1266343 CTAAGTTCGTGCCTCAAATGAGACAAAGATGGATTCTAGTGTTGATCATCATTCTTTTTGTGATA
66 CTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTACTAATGATCTTCATTCTTTTTGTGATA
* * * * * * * *
1266408 AGGAAGTATAAATAGATTCTCCGCATTAGGATAATTGACATTGATGTTTTTCTTTGGCATGGAAA
131 TGGCACTATAAACACATTCTCCGCATTAGGATAATTGACATTGATGCTTTGCTTT-GCATAGAAA
* ** ** *
1266473 -TCTTTTCTTTGC-CCAATTATTCCTAAAATGAAAGTTCATCCCTTGATTAAGA-AAAGCATCGA
195 GGC-TTTCTTCCCACCAATTATT-CTAAAATGAAAGTTCATCCCTCAAATAAGACAAA-CATCGA
1266535 TTCT
257 TTCT
1266539 CCTAACAGTC
Statistics
Matches: 1268, Mismatches: 226, Indels: 74
0.81 0.14 0.05
Matches are distributed among these distances:
633 4 0.00
634 69 0.05
635 685 0.54
636 467 0.37
637 41 0.03
638 2 0.00
ACGTcount: A:0.29, C:0.20, G:0.16, T:0.36
Consensus pattern (632 bp):
GGATACATGATATTGAAGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTGTTGTAAAGT
CTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTACTAATGATCTTCATTCTTTTTGTGATA
TGGCACTATAAACACATTCTCCGCATTAGGATAATTGACATTGATGCTTTGCTTTGCATAGAAAG
GCTTTCTTCCCACCAATTATTCTAAAATGAAAGTTCATCCCTCAAATAAGACAAACATCGATTCT
AGTAAAGATCTCCATTCTTTTTGTGATAAGGCACTATAAACATATTCTCCGCATTAGGATAATTG
ACATTGATGTTTTTCTTTTGCATGAAATCTTTTCTTTGCCCAATTATCCTTAAAATCAAAGTTCA
TCCCCTGAATAAGACAAGCATCGATTCTCCTAACAGTCTCCATTTCTTTCAAGATTGGGAAGCCA
AAACACATTGCCTTCGTTAGGATACACGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTT
CCCACCGTTTTTGATAGAATCAAAGTTTTCTCTTAAATAAGAAAGACATGAATACTCACACTAAT
CCCCATTCTTTTCAGGGTTAGGCTCCATAAACATAGTCTTCTCAGTT
Found at i:1266873 original size:476 final size:476
Alignment explanation
Indices: 1265804--1266882 Score: 1436
Period size: 476 Copynumber: 2.3 Consensus size: 476
1265794 TCTTTAGGAA
* * *** * *
1265804 ACATGATATTCATGCTTTGGTTTCATTATAAAGGCTTTCTTCCCACCAATTGTTGTAAAGTCTAC
1 ACATGATATTGAAGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTGTTGTAAAGTCTAA
* *
1265869 GTTCGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATTTTTTTTTTGTGATAAG
66 GTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCA--TTCTTTTTGTGATAAG
* * * * *
1265934 GCACTATAAATATATTCTCCGCATTAGGATAATTGACATTGATGTTTTTCTTTTGCATTAATGTC
129 GAACTATAAATAGATTCTCCGCATTAGGATAATTGACATTGATGTTTTTCTTTGGCATGAATATC
*
1265999 TTTTCTTTGCCCAATTATCCTTAAAATGAAAGTTCATCCCCTGAATAAGACAAGCATCGATTCTC
194 TTTTCTTTGCCCAATTATCCTTAAAATGAAAGTTCATCCCCTGAATAAGAAAAGCATCGATTCTC
* * * * *
1266064 GTAATAGTCTCCACACCTTTCAAGATTGGGAAGCCAAAACACATTGCCTTCAATAGGATACACGA
259 CTAACAGTCTCCACACCTTTCAAGATTGGGAAGCCAAAACACATTACCTCCAATAGGAAACACGA
* * *
1266129 CATTGATGCTTTGATGTCTCAAGAAAAGCTTTTCTTCTCGCCATTTTTGATAGAATCAAAGTTTG
324 CATTGATGCTTTGATGCCGCAAGAAAAGCTTTTCTTCTCGCCATTTTTGAGAGAATCAAAGTTTG
* * *
1266194 TCTCTTAAATAAGAAAGACACGAATACCCACCCGAATCCCCATTCTTTTCAGGATTAGGCTCCAT
389 TCTCTTAAATAAGAAAGACACGAATACCCACACGAATCCCCAATCTTTTCAGGATTAGGCACCAT
1266259 AAACAAAGTCTTCTCAGGTGGAT
454 AAACAAAGTCTTCTCAGGTGGAT
* *
1266282 ACATGATTTTGAAGCTTTGGTTTCGCAACAAAGGTTTTCTTCCCACCAATTGTTGTAAAGTCTAA
1 ACATGATATTGAAGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTGTTGTAAAGTCTAA
* ** *
1266347 GTTCGTGCCTCAAATGAGACAAAGATGGATTCTAGTGTTGATCATCATTCTTTTTGTGATAAGGA
66 GTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATAAGGA
*
1266412 AGTATAAATAGATTCTCCGCATTAGGATAATTGACATTGATGTTTTTCTTTGGCATGGAA-ATCT
131 ACTATAAATAGATTCTCCGCATTAGGATAATTGACATTGATGTTTTTCTTTGGCAT-GAATATCT
* *
1266476 TTTCTTTGCCCAATTATTCC-TAAAATGAAAGTTCATCCCTTGATTAAGAAAAGCATCGATTCTC
195 TTTCTTTGCCCAATTA-TCCTTAAAATGAAAGTTCATCCCCTGAATAAGAAAAGCATCGATTCTC
**** **
1266540 CTAACAGTCTCC-TTTTTTTCCAAGATTGGGAAGCCAAAACACATTACCTCCGTTAGGAAACACG
259 CTAACAGTCTCCACACCTTT-CAAGATTGGGAAGCCAAAACACATTACCTCCAATAGGAAACACG
* * *
1266604 ACATTGATGCTTTGGTGCCGCAAGAAAAGCTTTTCTTC-CTGTCGTTTTTGAGAGAATCAAAGTT
323 ACATTGATGCTTTGATGCCGCAAGAAAAGCTTTTCTTCTC-GCCATTTTTGAGAGAATCAAAGTT
* * * * *
1266668 TGTCTCTTAAATAAGACAA-ACATGAATACTCACACTAATCCCCAATCTTTTTAGGGTTAGGCAC
387 TGTCTCTTAAATAAGA-AAGACACGAATACCCACACGAATCCCCAATCTTTTCAGGATTAGGCAC
* *
1266732 CAT-AACATAGTCTTCTC-GTTAGGAT
451 CATAAACAAAGTCTTCTCAGGT-GGAT
* * * * * * *
1266757 ACATGATATTGAATCTTTGGTTTTGCAACAAAGGCTTCCCTCCCACCAGTTTTTGAAAAGTCTAA
1 ACATGATATTGAAGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTGTTGTAAAGTCTAA
* * * * * *
1266822 GTTTTCATGCCTCAAATGCGACAAACATGGATTCT-CTAATAATTTTCATTCTTTTTTTGAT
66 G--TTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGAT
1266883 TTGGCACTAT
Statistics
Matches: 524, Mismatches: 69, Indels: 18
0.86 0.11 0.03
Matches are distributed among these distances:
474 2 0.00
475 78 0.15
476 309 0.59
477 36 0.07
478 99 0.19
ACGTcount: A:0.29, C:0.20, G:0.16, T:0.35
Consensus pattern (476 bp):
ACATGATATTGAAGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTGTTGTAAAGTCTAA
GTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATAAGGA
ACTATAAATAGATTCTCCGCATTAGGATAATTGACATTGATGTTTTTCTTTGGCATGAATATCTT
TTCTTTGCCCAATTATCCTTAAAATGAAAGTTCATCCCCTGAATAAGAAAAGCATCGATTCTCCT
AACAGTCTCCACACCTTTCAAGATTGGGAAGCCAAAACACATTACCTCCAATAGGAAACACGACA
TTGATGCTTTGATGCCGCAAGAAAAGCTTTTCTTCTCGCCATTTTTGAGAGAATCAAAGTTTGTC
TCTTAAATAAGAAAGACACGAATACCCACACGAATCCCCAATCTTTTCAGGATTAGGCACCATAA
ACAAAGTCTTCTCAGGTGGAT
Found at i:1267151 original size:634 final size:633
Alignment explanation
Indices: 1266278--1267687 Score: 1990
Period size: 634 Copynumber: 2.2 Consensus size: 633
1266268 CTTCTCAGGT
* *
1266278 GGATACATGATTTTGAA-GCTTTGGTTTCGCAACAAAGGTTTTCTTCCCACCAATTGTTGTAAAG
1 GGATACATGATATT-AATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTGTTGTAAAG
* **
1266342 TCTAAGTTCGTGCCTCAAATGAGACAAAGATGGATTCTAGTGTTGATCATCATTCTTTTTGTGAT
65 TCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATC-TCATTCTTTTTGTGAT
* * * * * * * ** * *
1266407 AAGGAAGTATAAATAGATTCTCCGCATTAGGATAATTGACATTGATGTTTTTCTTTGGCATGGAA
129 ATGGCACTATAAACACAATCTCCGCATTACGATAAAAGACATTGAAGTTTTTCTTTGGCATGAAA
* *
1266472 ATCTTTTCTTTGCCCAATTATTCCTAAAATGAAAGTTCATCCCTTGATTAAGAAAAGCATCGATT
194 ATCTTTTCTTTCCCCAATTATTCCTAAAATGAAAGTTCATCCCTTGAATAAGAAAAGCATCGATT
*
1266537 CTCCTAACAGTCTCC-TTTTTTTCCAAGATTGGGAAGCCAAAACACATTACCTCCGTTAGGAAAC
259 CTCCAAACAGTCTCCATTTTTTT-CAAGATTGGGAAGCCAAAACACATTACCTCCGTTAGGAAAC
* * * *
1266601 ACGACATTGATGCTTT-GGTGCCGC-AAGAAAAGCTTTTCTTCCTGTCGTTTTTGAGAGAATCAA
323 ACGACATTAATGCTTTAGG-GCCACAAAG-AAAGCTTTTCTTCCCGCCGTTTTTGAGAGAATCAA
1266664 AGTTTGTCTCTTAAATAAGACAAACATGAATACTCACACTAATCCCCAATCTTTT-TAGGGTTAG
386 AGTTTGTCTCTTAAATAAGACAAACATGAATACTCACACTAATCCCCAATCTTTTCT-GGGTTAG
* * * * * **
1266728 GCACCAT-AACATAGTCTTCTCGTTAGGATACATGATATTGAATCTTTGGTTTTGCAACAAAGGC
450 GCACCATAAACATAGTCTTCTCATTAGGATACATCATACTGAAGCATTGGTCCTGCAACAAAGGC
* *
1266792 TTCCCTCCCACCAGTTTTTGAAAAGTCTAAGTTTTCATGCCTCAAATGCGACAAACATGGATTCT
515 TTCCCTCCAACCAGTTTTTGAAAAGTCTAAG--TTCATGACTCAAATGCGACAAACATGGATTCT
* * *
1266857 -CTAATAATTTTCATTCTTTTTTTGATTTGGCACTATAAACACTTTTTCCTCATTA
578 ACTAATAATTTTCATTCTTTTTGTGATTTGGCACAATAAACACATTTTCCTCATTA
* * * *
1266912 GGATACATGATATTCATGCTTTGATTTGGCAACAAAGGCTTTCTTCCCACCAATTGTTATAAAGT
1 GGATACATGATATTAATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTGTTGTAAAGT
* *
1266977 CTAAGTTGGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTCCAATCTTTTTGTGATA
66 CTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCT-CATTCTTTTTGTGATA
* *
1267042 TGGCACTATAAACACAATCTCCTCATTACGATAAAAGACATTGAAGTTTTTCTTTTGCATGAAAA
130 TGGCACTATAAACACAATCTCCGCATTACGATAAAAGACATTGAAGTTTTTCTTTGGCATGAAAA
* * *
1267107 TCTTTTCTTTCCCCTATT-TTCCTTAAAATGAAAGTTCTTCCCTTGAATAAGACAAGCATCGATT
195 TCTTTTCTTTCCCCAATTATTCC-TAAAATGAAAGTTCATCCCTTGAATAAGAAAAGCATCGATT
* * * **
1267171 CTCCAAACAGTCTCCATTTTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTCTTTAGGATGCA
259 CTCCAAACAGTCTCCATTTTTTTCAAGATTGGGAAGCCAAAACACATTACCTCCGTTAGGAAACA
* * * *
1267236 TGACATTAATGCTTTAGGGTCACAAAGAAAGCTTTTCTTCCCGCCGTTTTTGATAGAATCCAAGT
324 CGACATTAATGCTTTAGGGCCACAAAGAAAGCTTTTCTTCCCGCCGTTTTTGAGAGAATCAAAGT
* * * *
1267301 TTTTCTCTTAAATAAGACTAACATGAATACTCACACTAATCCCCATTCTTTTCTGGGTTAGGTAC
389 TTGTCTCTTAAATAAGACAAACATGAATACTCACACTAATCCCCAATCTTTTCTGGGTTAGGCAC
* *
1267366 CATAAATATAGTCTTCTCATTAGGATACATCATACTGAAGCATTGGTCCTGCAACAAAGGCTTTC
454 CATAAACATAGTCTTCTCATTAGGATACATCATACTGAAGCATTGGTCCTGCAACAAAGGCTTCC
* * * *
1267431 TTCCAACCAGTTTTTGTAAAGTCTAAGTTCATGACTCAAATGCGACAAACATGGATTCTAGTGAT
519 CTCCAACCAGTTTTTGAAAAGTCTAAGTTCATGACTCAAATGCGACAAACATGGATTCTACTAAT
*
1267496 GATTTTCATTCTTTTTGTGATTTGGCACAATAAACACATTTTCCTCATTA
584 AATTTTCATTCTTTTTGTGATTTGGCACAATAAACACATTTTCCTCATTA
* * *
1267546 GGATACATGATATTAATGCTTTGGCTTCACAACAAAGGCTTTCTTCCAACCAATTGTTGTAAAGT
1 GGATACATGATATTAATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTGTTGTAAAGT
* * * ** *
1267611 CTAAGTTCGTGCCTCAAATGAGATAAATATGGATTCTACTAATGATTTTCATTCTTTACGTGATT
66 CTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGA-TCTCATTCTTTTTGTGATA
1267676 TGGCACTATAAA
130 TGGCACTATAAA
1267688 GGCTTTTTTC
Statistics
Matches: 685, Mismatches: 81, Indels: 20
0.87 0.10 0.03
Matches are distributed among these distances:
633 37 0.05
634 557 0.81
635 91 0.13
ACGTcount: A:0.30, C:0.20, G:0.15, T:0.35
Consensus pattern (633 bp):
GGATACATGATATTAATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTGTTGTAAAGT
CTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTCATTCTTTTTGTGATAT
GGCACTATAAACACAATCTCCGCATTACGATAAAAGACATTGAAGTTTTTCTTTGGCATGAAAAT
CTTTTCTTTCCCCAATTATTCCTAAAATGAAAGTTCATCCCTTGAATAAGAAAAGCATCGATTCT
CCAAACAGTCTCCATTTTTTTCAAGATTGGGAAGCCAAAACACATTACCTCCGTTAGGAAACACG
ACATTAATGCTTTAGGGCCACAAAGAAAGCTTTTCTTCCCGCCGTTTTTGAGAGAATCAAAGTTT
GTCTCTTAAATAAGACAAACATGAATACTCACACTAATCCCCAATCTTTTCTGGGTTAGGCACCA
TAAACATAGTCTTCTCATTAGGATACATCATACTGAAGCATTGGTCCTGCAACAAAGGCTTCCCT
CCAACCAGTTTTTGAAAAGTCTAAGTTCATGACTCAAATGCGACAAACATGGATTCTACTAATAA
TTTTCATTCTTTTTGTGATTTGGCACAATAAACACATTTTCCTCATTA
Found at i:1268420 original size:158 final size:158
Alignment explanation
Indices: 1267778--1273331 Score: 1408
Period size: 159 Copynumber: 35.1 Consensus size: 158
1267768 TTCTTTTCAG
* ** * * * *
1267778 GATTAGGCACCATAAACATTGTCATCTCGTTAGGATACATGATATTAAAGCTTTGGTTTCGCAAC
1 GATTTGGCACCATAAACACAGTCTTCTCATTAGGATACATGACATTGAAGCTTTGGTTTCGCAAC
* * * * * * * * *
1267843 AAAAGTTTTCTTCCCACCAATTGTTGTAAAGTCTCAGTTCGTGCCTCAAATCAGCCATATATGGA
66 AAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCTTGCCTCAAATAAGACAAACATGGA
* * * *
1267908 TTCTAGTATTGATCATCATTCTATTTGT
131 TTCTACTAATGATCTTCATTCTTTTTGT
** * * * * * * *
1267936 GATAAGGCACAATAAACACATTCTCCGCATTAGGATA-ATTGACATTGATGCTTTGCTTTTGCAT
1 GATTTGGCACCATAAACACAGTCTTCTCATTAGGATACA-TGACATTGAAGCTTTGGTTTCGCA-
** * ** * * * * * * **
1268000 GGAAA-TCTTTTCTTTGC-CCAATTATCCT-TAAAATCAAAGTTCATCCCTTAAATAAGACAAGG
64 ACAAAGGC-TTTCTTCCCACCAATT-T-TTGTAAAGTCTAAGTTCTTGCCTCAAATAAGACAAAC
* * * * ***
1268062 ATCGATTCTCCTAA-CACTCTCCATT-TTTTCCAA
126 ATGGATTCTACTAATGA-TCTTCATTCTTTT-TGT
* * * * * * *
1268095 GATTTGGAAGCCA-AAACACATTGCCT-TCATTAGGATACACGACATT-AATGCTTTGGTGTAGT
1 GATTTGGCA-CCATAAACACAGT-CTTCTCATTAGGATACATGACATTGAA-GCTTTGGTTTCGC
** * * * * * *
1268157 AGGAAAAGCTTTTTTTCCAGCC-GTTTTTGATAGAA-TCAAAAGTTGTCT-CCT-AAATAAGA-A
63 AACAAAGGCTTTCTTCCCA-CCAATTTTTG-TA-AAGTC-TAAGTTCT-TGCCTCAAATAAGACA
* * * *
1268217 AGACGTGAATACTCACACTAATG--C--CATTCTTTTCAG-
123 A-ACATGGAT--TC-TACTAATGATCTTCATTCTTTT-TGT
* * * * *
1268253 GGTTAGGCACCATAAACATAGTCTTCTCGTTAGGATACATGATATTGAAGCTTTGGTTTCGCAAC
1 GATTTGGCACCATAAACACAGTCTTCTCATTAGGATACATGACATTGAAGCTTTGGTTTCGCAAC
* ** *
1268318 AAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGCGATAAACATGGA
66 AAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCTTGCCTCAAATAAGACAAACATGGA
* *
1268383 TTCTACTAATGATTTTCATTCTTTCTGT
131 TTCTACTAATGATCTTCATTCTTTTTGT
* * * * *
1268411 GATTTGGCACTATAAACACA-TTTTCCTCATTAGGATATATGATATT-AATGCTTTGCTTTCGCA
1 GATTTGGCACCATAAACACAGTCTT-CTCATTAGGATACATGACATTGAA-GCTTTGGTTTCGCA
* * * * * * *
1268474 ATAAAGGCTTTCTTCCCACCGATTGTTGTAAAGTCTTAAGTTCGCT-CCTCAAATGAGAGAAATA
64 ACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTC-TAAGTTC-TTGCCTCAAATAAGACAAACA
*
1268538 TGGATTCTAGTAATGATCTTCATTCTTTTTGT
127 TGGATTCTACTAATGATCTTCATTCTTTTTGT
* * * * * * * ** *
1268570 GATATGGCACTATGAACACATTCTCCACATTAGGATA-ATTGACATTGATA-TTTTTCTTTTGCA
1 GATTTGGCACCATAAACACAGTCTTCTCATTAGGATACA-TGACATTGA-AGCTTTGGTTTCGCA
** ** ** * * * * * ** *
1268633 TGAAAACCTTTTCTTTGC-CCAATTATCCT-TAAAATCAAAATTCTTCCCTTGAATAAGACAAGC
64 ACAAAGGC-TTTCTTCCCACCAATT-T-TTGTAAAGTCTAAGTTCTTGCCTCAAATAAGACAAAC
* * * * **
1268696 ATCGATTCTCCTAA-CAGTCTCCATT-TTTTTCAA
126 ATGGATTCTACTAATGA-TCTTCATTCTTTTT-GT
* * * * * * ** *
1268729 GATTGGGAAGCCA-AAACACATTGCCTTCT--TTAGGATGCACGACATTGATGCTTTGGGGTCAC
1 GATTTGGCA-CCATAAACACA--GTCTTCTCATTAGGATACATGACATTGAAGCTTTGGTTTCGC
* * ** * * * * * * * * *
1268791 AAGGAAA-GCTTTTCTTTCTGCC-GTTTTTGATTGAA-TCCAAATT-TTTCTGTTAAACAAGACT
63 AA-CAAAGGC-TTTCTTCCCACCAATTTTTG--TAAAGTCTAAGTTCTTGC-CTCAAATAAGACA
* * * * * ** * *
1268852 AACATGAATACT-CGCACTAATCCCCATTC-CTTTGAG
123 AACATGGATTCTAC-TAATGATCTTCATTCTTTTTG-T
* * * * * * * *
1268888 GGTTAGGCACCACAAACATAGTCTTCTCGTTTGGATACATGATATTGAAGCTTTGGTTTCGTAAC
1 GATTTGGCACCATAAACACAGTCTTCTCATTAGGATACATGACATTGAAGCTTTGGTTTCGCAAC
* * * *
1268953 AAAAGCTTTCTTCCCACCAATTTTTGTAAAGCCTAAGTTCATGCCTCAAATGCA-ACAAACATGG
66 AAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCTTGCCTCAAAT-AAGACAAACATGG
*
1269017 ATTCTACTAATGATTTTCATTCTTTTTGT
130 ATTCTACTAATGATCTTCATTCTTTTTGT
** * * * * *
1269046 GATTTGGCAGTATAAACACA-TTTTCCTCATTAGGATATATGATATT-AATGATTTGGTTTCACA
1 GATTTGGCACCATAAACACAGTCTT-CTCATTAGGATACATGACATTGAA-GCTTTGGTTTCGCA
* * *
1269109 ACAAAGGCTTTCTTCCCACCAATTGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAA-ACAAATAT
64 ACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCTTGCCTCAAAT-AAGACAAACAT
* *
1269173 GTATTCTAGTAATGATCTTCATT-TTTTTCGT
128 GGATTCTACTAATGATCTTCATTCTTTTT-GT
* * * * * * ** *
1269204 GATATGGCACTATAAACACATTC-TCTGCATTAGGATTA-TTGACATTGATGTTTTTCTTTTGCA
1 GATTTGGCACCATAAACACAGTCTTCT-CATTAGGA-TACATGACATTGAAGCTTTGGTTTCGCA
** ** ** * * ** * * * ** *
1269267 TGAAAACCTTTTCTTTGC-CCAGTTATCCT-TAAACACAAACTTCTTCCCTTGAATAAGACAAGC
64 ACAAAGGC-TTTCTTCCCACCAATT-T-TTGTAAAGTCTAAGTTCTTGCCTCAAATAAGACAAAC
* * ** * **
1269330 ATCGATTCTCCTAACAATCTCCATT-TTTTTCAA
126 ATGGATTCTACTAATGATCTTCATTCTTTTT-GT
* * * * * * * *
1269363 GATTGGGAAGCCA-AAACACATTGCCTTCT--TTAGGATGCACGACATTGATGCTTT-GTGGTCA
1 GATTTGGCA-CCATAAACACA--GTCTTCTCATTAGGATACATGACATTGAAGCTTTGGT-TTCG
* * ** * * *
1269424 CAAGGAAA-GCTTTTCTTTCTGCC-ATTTTTGATAGAA-TCCAAGTT-TTTCTCTTAAATAAGAC
62 CAA-CAAAGGC-TTTCTTCCCACCAATTTTTG-TA-AAGTCTAAGTTCTTGC-CTCAAATAAGAC
* * * * **
1269485 TAAA-ATGAATACTCAC-ACT-AGTCTCCATTCCTTTCAG-
122 -AAACATGGATTCT-ACTAATGA-TCTTCATT-CTTTTTGT
* * * * *
1269522 GGTTAGGCACCACAAACATAGTCTTCTCATTAGGATACATGATATTGAAGCTTTGGTTTCGCAAC
1 GATTTGGCACCATAAACACAGTCTTCTCATTAGGATACATGACATTGAAGCTTTGGTTTCGCAAC
* * * *
1269587 AAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTACCTCAAATGAGACAAATATGGA
66 AAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCTTGCCTCAAATAAGACAAACATGGA
*
1269652 TTCTAGTAATGATCTTCATTCTTTTTGT
131 TTCTACTAATGATCTTCATTCTTTTTGT
* * * * * *
1269680 GATATGGCACTATAAACACATTCTCCGCATTAGGATA-ATTGACATTGATA--ATTGCG--T-G-
1 GATTTGGCACCATAAACACAGTCTTCTCATTAGGATACA-TGACATTGA-AGCTTTG-GTTTCGC
* ** * * ** ** *
1269738 -A-AAA-CCTTTTCTTTGC-CCAATTATCTT-TAAAATCAAAGTTCTCCCCTTGAATAAGACAAG
63 AACAAAGGC-TTTCTTCCCACCAATT-T-TTGTAAAGTCTAAGTTCTTGCCTCAAATAAGACAAA
* * * * * **
1269798 CATCGATTCTGCTAA-CAGTCTCCATTTTTTTTCAA
125 CATGGATTCTACTAATGA-TCTTCATTCTTTTT-GT
* * * * * ** *
1269833 GATTGGGAAGCCA-AAACACAATGCCTTCT--TTAGGATGCATGACATTGATGCTTTGGGGTCAC
1 GATTTGGCA-CCATAAACAC-A-GTCTTCTCATTAGGATACATGACATTGAAGCTTTGGTTTCGC
* *** * * *
1269895 AAGGAAA-GCTTTTCTT-CTTGCAGTTTTTGATAGAA-TGC-AAGTTATT-CTCTTAAATAAGAC
63 AA-CAAAGGC-TTTCTTCCCACCAATTTTTG-TA-AAGT-CTAAGTTCTTGC-CTCAAATAAGAC
* * * * ** *
1269955 TAACATGAATACTCAC-ACT-AGTCCCCATTCTTTTAAG-
122 AAACATGGATTCT-ACTAATGA-TCTTCATTCTTTT-TGT
* * * * * * * * * * * * *
1269992 GGTTAGGTACCATAAATATAGTTTTCTTATTAGCATACAGGATACTGAAGCATTGGTTTTGCAAC
1 GATTTGGCACCATAAACACAGTCTTCTCATTAGGATACATGACATTGAAGCTTTGGTTTCGCAAC
* * * **
1270057 AAAGGCTTTCTTCCCACCAGTTTTTAT-AAGTCTAAGTTCATGCCTCAAATGCGACAAACATGGA
66 AAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCTTGCCTCAAATAAGACAAACATGGA
* * *
1270121 TTCTACTGATGATTTTCGTTCTTTTTGT
131 TTCTACTAATGATCTTCATTCTTTTTGT
* * * *
1270149 GATTTGGCACAATAAACACATTTTTGTCATTAGGATACATGACATT-AATGCTTTGGTTTCGCAA
1 GATTTGGCACCATAAACACAGTCTTCTCATTAGGATACATGACATTGAA-GCTTTGGTTTCGCAA
* * * * * *
1270213 CAAAGGCTTTCTTCCAACCAATTGTTGTAAAGTCTAAGTT-TGTACCTCCAATGAGACAAATATG
65 CAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCT-TGCCTCAAATAAGACAAACATG
* *
1270277 GATTTTAGTAATGATCTTCATT-TTTTTGT
129 GATTCTACTAATGATCTTCATTCTTTTTGT
* * * * * * * * ** * **
1270306 GATATGGCACTATAAACACATTCTCCGCATTAGGATTA-TTGACATTGATGTTTTTCTTTTGCGT
1 GATTTGGCACCATAAACACAGTCTTCTCATTAGGA-TACATGACATTGAAGCTTTGGTTTCGCAA
* ** ** * * * *** **
1270370 GAAAACCTTTTCTTTGC-CCAATTATCTT-TAAAATCAAAGTT-TTCCCTTGGATAAGACAGGCA
65 CAAAGGC-TTTCTTCCCACCAATT-T-TTGTAAAGTCTAAGTTCTTGCCTCAAATAAGACAAACA
* * * ***
1270432 TCGATTCTCCTAA-CAGTC-TCAATT-TTTTCCAA
127 TGGATTCTACTAATGA-TCTTC-ATTCTTTT-TGT
* * * * * * * *
1270464 GATTGGGAAGCCA-AAACACATTGCCT-TCATTAGGATACACGACATTGATGCTTTGGTGTCGTA
1 GATTTGGCA-CCATAAACACAGT-CTTCTCATTAGGATACATGACATTGAAGCTTTGGTTTCGCA
** * * * * * ** * *
1270527 GGAAAAGCTTTTTTTCTAGCTGTTTTTGATAGAA-TCAAAAGTTGTCT-CC-CAAATAAGA-AAG
64 ACAAAGGCTTTCTTCCCACCAATTTTTG-TA-AAGTC-TAAGTTCT-TGCCTCAAATAAGACAA-
* * * * * ** *
1270588 ACGTGAATACTCAC-ACTAATCCCCATTCTTTTCAG-
124 ACATGGATTCT-ACTAATGATCTTCATTCTTTT-TGT
* * * * *
1270623 GGTTAGGCACCATAAACATAGTCTTCTCGTTAGGATACATGATATTGAAGCTTTGGTTTCGCAAC
1 GATTTGGCACCATAAACACAGTCTTCTCATTAGGATACATGACATTGAAGCTTTGGTTTCGCAAC
* * ** *
1270688 AAAGGCTTTCTTCCTACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGCGATAAACATGGA
66 AAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCTTGCCTCAAATAAGACAAACATGGA
* *
1270753 TTCTACTAATGATTTTCATTCTTTCTGT
131 TTCTACTAATGATCTTCATTCTTTTTGT
* * * * * * * * *
1270781 GATTTGGCACTATAAACACA-TTTTCCGCACTAAGATATATGATAGT-AATGCTTTGCTTTCGCA
1 GATTTGGCACCATAAACACAGTCTT-CTCATTAGGATACATGACATTGAA-GCTTTGGTTTCGCA
* * * * * * *** * *
1270844 ATAAAGGCTTTCTTCCGACCGATTGTTGCAAAGTCTTAACTTCGCACCTCAAATGAGACAAATAT
64 ACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTC-TAAGTTCTTGCCTCAAATAAGACAAACAT
* * *
1270909 GGATTGTAGTAATGATCTTCACTCTTTTTGT
128 GGATTCTACTAATGATCTTCATTCTTTTTGT
* * * * * * * ** *
1270940 GATATGGCACTATGAACACATTCTCCGCATTAGGATA-ATTGACATTGATA-TTTTTCTTTTGCA
1 GATTTGGCACCATAAACACAGTCTTCTCATTAGGATACA-TGACATTGA-AGCTTTGGTTTCGCA
** ** ** * * * * ** *
1271003 TGAAAACCTTTTCTTTAC-CCAATTATCCT-TAAAATCAAAGTTCTTCCCTTGAATAAGACAAGC
64 ACAAAGGC-TTTCTTCCCACCAATT-T-TTGTAAAGTCTAAGTTCTTGCCTCAAATAAGACAAAC
* * * * * **
1271066 ATCGACTCTCCTAA-CAGTCTCCATT-TTTTTCAA
126 ATGGATTCTACTAATGA-TCTTCATTCTTTTT-GT
* * * * * * ** *
1271099 GATTGGGAAGCCA-AAACACATTGCCTTCT--TTAGGATGCACGACATTGATGCTTTGGGGTCAC
1 GATTTGGCA-CCATAAACACA--GTCTTCTCATTAGGATACATGACATTGAAGCTTTGGTTTCGC
* * *** * * * * * * * *
1271161 AAGGAAA-GCTTTTCTTTCTGTC-GTTTTTGATAGAA-TCCAAATT-TTTCTGTTAAACAAGACT
63 AA-CAAAGGC-TTTCTTCCCACCAATTTTTG-TA-AAGTCTAAGTTCTTGC-CTCAAATAAGACA
* * * * * ** **
1271222 AACATGAATACT-CGCACTAATCCCCATTCCTTTCAG-
123 AACATGGATTCTAC-TAATGATCTTCATT-CTTTTTGT
* * * * * *
1271258 GGTTAGGCACCACAAACACAGTCTTCTCGTTTGGATACATGATATTGAAGCTTTGGTTTCGCAAC
1 GATTTGGCACCATAAACACAGTCTTCTCATTAGGATACATGACATTGAAGCTTTGGTTTCGCAAC
* * * ** *
1271323 AAAAGCTTTCTTCCCACCAATTTTTGTAAAGCCTAAGTTCATGCCTCAAATGCGACAAACAAGGA
66 AAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCTTGCCTCAAATAAGACAAACATGGA
1271388 TTCTACTAATGAT-TCTCATTCTTTTTGT
131 TTCTACTAATGATCT-TCATTCTTTTTGT
* * * * * *
1271416 GATTTGGCACTATAAACACA-TTTTCCTCATTAGGATATATGATATT-AATG-TTTGATTTCACA
1 GATTTGGCACCATAAACACAGTCTT-CTCATTAGGATACATGACATTGAA-GCTTTGGTTTCGCA
* * * *
1271478 ACAAAGGCTTTCTTTCCACCAATTGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAA-ACAAATAT
64 ACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCTTGCCTCAAAT-AAGACAAACAT
* *
1271542 GTATTCTAGTAATGATCTTCATT-TTTTTCG-
128 GGATTCTACTAATGATCTTCATTCTTTTT-GT
* * * * * * * ** *
1271572 CAGTATGGCACTATAAACACATTC-TCTGCATTAGGATTA-TTGACATTGATGTTTTTCTTTTGC
1 GA-TTTGGCACCATAAACACAGTCTTCT-CATTAGGA-TACATGACATTGAAGCTTTGGTTTCGC
** ** ** * ** ** * * * ** *
1271635 ATGAAAACCTTTTCTTTGC-CTAAGTATCCT-TAAAAACAAACTTCTTCCCTTGAATAAGACAAG
63 AACAAAGGC-TTTCTTCCCACCAA-T-TTTTGTAAAGTCTAAGTTCTTGCCTCAAATAAGACAAA
* * ** * **
1271698 CATCGATTCTCCTAACAATCTCCATT-TTTTTCAA
125 CATGGATTCTACTAATGATCTTCATTCTTTTT-GT
* * * ** * * * ** *
1271732 GATTGGGAAGCCA-AAACACATTGCTT-TGTTTAGGATGCACGACATTGATGCTTTGGGGTCACA
1 GATTTGGCA-CCATAAACACAGT-CTTCTCATTAGGATACATGACATTGAAGCTTTGGTTTCGCA
* * ** * * *
1271795 AGGAAA-GCTTTTCTTTCTGCC-ATTTTTGATAGAA-TCCAAGTT-TTTCTCTTAAATAAGACTA
64 A-CAAAGGC-TTTCTTCCCACCAATTTTTG-TA-AAGTCTAAGTTCTTGC-CTCAAATAAGAC-A
** **
1271856 AA-AT-GA--CTACTCACACT-AGTCCCCATTCCTTTCAG-
123 AACATGGATTCTACT-A-A-TGA-TCTTCATT-CTTTTTGT
* * * * * *
1271891 GGTTAGGCACCACAAACATAGTCTTCTCGTTAGGATACATGATATTGAAGCTTTGGTTTCGCAAC
1 GATTTGGCACCATAAACACAGTCTTCTCATTAGGATACATGACATTGAAGCTTTGGTTTCGCAAC
* * *
1271956 AAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAAGATGGA
66 AAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCTTGCCTCAAATAAGACAAACATGGA
* ** *
1272021 TTCTAGTGTTGATCATCATTCTTTTTGT
131 TTCTACTAATGATCTTCATTCTTTTTGT
** * ** * * * * * * ** *
1272049 GATAAGGAAGTATAAATAGATTCTCCGCATTAGGATA-ATTGACATTGATG-TTTTCTTTGGCAT
1 GATTTGGCACCATAAACACAGTCTTCTCATTAGGATACA-TGACATTGAAGCTTTGGTTTCGCA-
** * ** ** * ** * * ** *
1272112 GGAAA-TCTTTTCTTTGC-CCAATTATTCCTAAAATGAAAGTTCATCCCTTGATTAAGA-AAAGC
64 ACAAAGGC-TTTCTTCCCACCAATT-TTTGTAAAGTCTAAGTTCTTGCCTCAAATAAGACAAA-C
* * * * **
1272174 ATCGATTCTCCTAA-CAGTC-TCCTT-TTTTTCCAA
126 ATGGATTCTACTAATGA-TCTTCATTCTTTTT--GT
* * * * * * * * *
1272207 GATTGGGAAGCCA-AAACACATTACCTC-CGTTAGGAAACACGACATTGATGCTTTGG-TGCTGC
1 GATTTGGCA-CCATAAACACAGT-CTTCTCATTAGGATACATGACATTGAAGCTTTGGTTTC-GC
* * *** * * *
1272269 AAGAAAAGCTTTTCTTCCTGTC-GTTTTTG-AGAGAATCAAAG-T-TTGCCTCTTAAATAAGACA
63 AACAAAGGC-TTTCTTCCCACCAATTTTTGTA-A-AGTCTAAGTTCTTGCCTC--AAATAAGACA
* * * * ** *
1272330 AACATGAATACTCAC-ACTAATCCCCAATCTTTTTAG-
123 AACATGGATTCT-ACTAATGATCTTCATTCTTTTT-GT
* * * * * * *
1272366 GGTTAGGCACCAT-AACATAGTCTTCTCGTTAGGATACATGATATTGAATCTTTGGTTTTGCAAC
1 GATTTGGCACCATAAACACAGTCTTCTCATTAGGATACATGACATTGAAGCTTTGGTTTCGCAAC
* * * * * * **
1272430 AAAGGCTTCCCTCCCACCAGTTTTTGAAAAGTCTAAGTTTTCATGCCTCAAGTGCGACAAACATG
66 AAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAG--TTCTTGCCTCAAATAAGACAAACATG
* * *
1272495 GATTCT-CTAATAATTTTCATTCTTTTTTT
129 GATTCTACTAATGATCTTCATTCTTTTTGT
* * * * * * * *
1272524 GATTTGGCACTATAAACAC-TTTTTCCTCATTAGGATACATGATATTCATGCTTTGATTTGGCAA
1 GATTTGGCACCATAAACACAGTCTT-CTCATTAGGATACATGACATTGAAGCTTTGGTTTCGCAA
* * * ** * *
1272588 CAAAGGCTTTCTTCCCACCAATTGTTATAAAGTCTATGTTGGTGCCTCAAATGAGACAAATATGG
65 CAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCTTGCCTCAAATAAGACAAACATGG
* *
1272653 ATTCTAGTAATGATC-TCGAATCTTTTTGT
130 ATTCTACTAATGATCTTC-ATTCTTTTTGT
* * * * * * * * ** * **
1272682 GATATGGCACTATAAACACAATCTCCTCATTACGATAAAAGACATTGAAGTTTTTCTTTTGCATG
1 GATTTGGCACCATAAACACAGTCTTCTCATTAGGATACATGACATTGAAGCTTTGGTTTCGCAAC
** * * * ** * ** *
1272747 AAAATCTTTTCTTTCC-CCTATTTTCCT-TAAAATGAAAGTTCTTCCCTTGAATAAGACAAGCAT
66 AAAGGC-TTTCTTCCCACCAATTTT--TGTAAAGTCTAAGTTCTTGCCTCAAATAAGACAAACAT
* * ** * **
1272810 CGATTCT-CCAAACAGTCTCCATT-TTTTTCAA
128 GGATTCTACTAATGA-TCTTCATTCTTTTT-GT
* * * * * * *
1272841 GATTGGGAAGCCA-AAACACATTGCCTTCT--TTAGGATGCATGACATTGATGCTTTAGG-GTCA
1 GATTTGGCA-CCATAAACACA--GTCTTCTCATTAGGATACATGACATTGAAGCTTT-GGTTTCG
* ** * * * *
1272902 CAA-AGAAAGCTTTTCTTCCCGTC-GTTTTTGATAGAA-TCCAAGTT-TTTCTCTTAAATAAGAC
62 CAACA-AAGGC-TTTCTTCCCACCAATTTTTG-TA-AAGTCTAAGTTCTTGC-CTCAAATAAGAC
* * * * * ** *
1272963 TAACATGAATACTCAC-ACTAATCCCCATTCTTTTCCG-
122 AAACATGGATTCT-ACTAATGATCTTCATTCTTTT-TGT
* * * * * * * * * *
1273000 GGTTAGGTACCATAAATATAGTCTTCTCATTAGGATACATCATACTGAAGCATTGG-TCCTGCAA
1 GATTTGGCACCATAAACACAGTCTTCTCATTAGGATACATGACATTGAAGCTTTGGTTTC-GCAA
* * * * **
1273064 CAAAGGCTTTCTTCCAACCAGTTTTTGTAAAGTCTAAGTTCATGACTCAAATGCGACAAACATGG
65 CAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCTTGCCTCAAATAAGACAAACATGG
* * *
1273129 ATTCTACTGATGATTTTTATTCTTTTTGT
130 ATTCTACTAATGATCTTCATTCTTTTTGT
* * * * *
1273158 GATTTGGCACAATAAACACA-TTTTCCTCATTAGGATACATGATATT-AATGCTTTGGCTTCACA
1 GATTTGGCACCATAAACACAGTCTT-CTCATTAGGATACATGACATTGAA-GCTTTGGTTTCGCA
* * * * * *
1273221 ACAAAGGCTTTCTTCCAACCAATTGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGATAAATATG
64 ACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCTTGCCTCAAATAAGACAAACATG
* **
1273286 GATTCTACTAATGATTTTCATTCTTTACGT
129 GATTCTACTAATGATCTTCATTCTTTTTGT
*
1273316 GATTTGGCACTATAAA
1 GATTTGGCACCATAAA
1273332 GGCTTTTTTC
Statistics
Matches: 3877, Mismatches: 1172, Indels: 694
0.68 0.20 0.12
Matches are distributed among these distances:
151 8 0.00
152 58 0.01
153 32 0.01
154 14 0.00
155 8 0.00
156 42 0.01
157 546 0.14
158 1445 0.37
159 1471 0.38
160 197 0.05
161 49 0.01
162 7 0.00
ACGTcount: A:0.29, C:0.20, G:0.15, T:0.36
Consensus pattern (158 bp):
GATTTGGCACCATAAACACAGTCTTCTCATTAGGATACATGACATTGAAGCTTTGGTTTCGCAAC
AAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCTTGCCTCAAATAAGACAAACATGGA
TTCTACTAATGATCTTCATTCTTTTTGT
Found at i:1268541 original size:898 final size:898
Alignment explanation
Indices: 1266909--1268582 Score: 2502
Period size: 898 Copynumber: 1.9 Consensus size: 898
1266899 TTTTTCCTCA
* * * *
1266909 TTAGGATACATGATATTCATGCTTTGATTTGGCAACAAAGGCTTTCTTCCCACCAATTGTTATAA
1 TTAGGATACATGATATTAAAGCTTTGATTTCGCAACAAAAGCTTTCTTCCCACCAATTGTTATAA
* * *
1266974 AGTCTAAGTTGGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTCCAATCTTTTTGTG
66 AGTCTAAGTTCGTGCCTCAAATCAGACAAATATGGATTCTAGTAATGATCTCCAATCTATTTGTG
* * * * *
1267039 ATATGGCACTATAAACACAATCTCCTCATTACGATAAAAGACATTGAAGTTTTTCTTTTGCATGA
131 ATAAGGCACAATAAACACAATCTCCGCATTACGATAAAAGACATTGAAGCTTTGCTTTTGCATGA
* * * * *
1267104 AAATCTTTTCTTTCCCCTATTTTCCTTAAAATGAAAGTTCTTCCCTTGAATAAGACAAGCATCGA
196 AAATCTTTTCTTTCCCCAATTATCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGA
* * * *
1267169 TTCTCCAAACAGTCTCCATTTTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTCTTTAGGATG
261 TTCTCCAAACACTCTCCATTTTTTCCAAGATTGGGAAGCCAAAACACATTGCCTTCATTAGGATA
* * *
1267234 CATGACATTAATGCTTTAGGGTCACAAAGAAAGCTTTTCTTCCCGCCGTTTTTGATAGAATCCAA
326 CACGACATTAATGCTTTAGGGTCACAAAGAAAGCTTTTCTTCCAGCCGTTTTTGATAGAATCAAA
* * * * *
1267299 GTTTTTCTCTTAAATAAGACTAACATGAATACTCACACTAATCCCCATTCTTTTCTGGGTTAGGT
391 GTTTGTCTCCTAAATAAGACAAACATGAATACTCACACTAATCCCCATTCTTTTCAGGGTTAGGC
*
1267364 ACCATAAATATAGTCTTCTCATTAGGATACATCATACTGAAGCATTGGTCCTGCAACAAAGGCTT
456 ACCATAAACATAGTCTTCTCATTAGGATACATCATACTGAAGCATTGGTCCTGCAACAAAGGCTT
* * *
1267429 TCTTCCAACCAGTTTTTGTAAAGTCTAAGTTCATGACTCAAATGCGACAAACATGGATTCTAGTG
521 TCTTCCAACCAATTTTTGTAAAGTCTAAGTTCATGACTCAAATGCGACAAACATGGATTCTACTA
*
1267494 ATGATTTTCATTCTTTTTGTGATTTGGCACAATAAACACATTTTCCTCATTAGGATACATGATAT
586 ATGATTTTCATTCTTTCTGTGATTTGGCACAATAAACACATTTTCCTCATTAGGATACATGATAT
1267559 TAATGCTTTGGCTTCACAACAAAGGCTTTCTTCCAACCAATTGTTGTAAAGTCTAAGTTCGTGCC
651 TAATGCTTTGGCTTCACAACAAAGGCTTTCTTCCAACCAATTGTTGTAAAGTCTAAGTTCGTGCC
* * *
1267624 TCAAATGAGATAAATATGGATTCTACTAATGATTTTCATTCTTTACGTGATTTGGCACTATAAAG
716 TCAAATGAGAGAAATATGGATTCTACTAATGATCTTCATTCTTTACGTGATATGGCACTATAAAG
1267689 GCTTTTTTCCCGCCATTTTTGATTGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACT
781 GCTTTTTTCCCGCCATTTTTGATTGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACT
1267754 CACAAAAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATTGTCATCTCG
846 CACAAAAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATTGTCATCTCG
* * *
1267807 TTAGGATACATGATATTAAAGCTTTGGTTTCGCAACAAAAGTTTTCTTCCCACCAATTGTTGTAA
1 TTAGGATACATGATATTAAAGCTTTGATTTCGCAACAAAAGCTTTCTTCCCACCAATTGTTATAA
* * * * *
1267872 AGTCTCAGTTCGTGCCTCAAATCAGCCATATATGGATTCTAGTATTGATCAT-CATTCTATTTGT
66 AGTCTAAGTTCGTGCCTCAAATCAGACAAATATGGATTCTAGTAATGATC-TCCAATCTATTTGT
* * ** *
1267936 GATAAGGCACAATAAACACATTCTCCGCATTAGGATAATTGACATTGATGCTTTGCTTTTGCATG
130 GATAAGGCACAATAAACACAATCTCCGCATTACGATAAAAGACATTGAAGCTTTGCTTTTGCATG
* * *
1268001 GAAATCTTTTCTTTGCCCAATTATCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGGATCG
195 AAAATCTTTTCTTTCCCCAATTATCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCG
* *
1268066 ATTCTCCTAACACTCTCCATTTTTTCCAAGATTTGGAAGCCAAAACACATTGCCTTCATTAGGAT
260 ATTCTCCAAACACTCTCCATTTTTTCCAAGATTGGGAAGCCAAAACACATTGCCTTCATTAGGAT
** * *
1268131 ACACGACATTAATGCTTT-GGTGT-AGTAGGAAAAGCTTTTTTTCCAGCCGTTTTTGATAGAATC
325 ACACGACATTAATGCTTTAGG-GTCACAAAG-AAAGCTTTTCTTCCAGCCGTTTTTGATAGAATC
* *
1268194 AAAAG-TTGTCTCCTAAATAAGA-AAGACGTGAATACTCACACTAAT-GCCATTCTTTTCAGGGT
388 -AAAGTTTGTCTCCTAAATAAGACAA-ACATGAATACTCACACTAATCCCCATTCTTTTCAGGGT
* * * * *
1268256 TAGGCACCATAAACATAGTCTTCTCGTTAGGATACATGATATTGAAGCTTTGGT-TTCGCAACAA
451 TAGGCACCATAAACATAGTCTTCTCATTAGGATACATCATACTGAAGCATTGGTCCT-GCAACAA
* * *
1268320 AGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGCGATAAACATGGATT
515 AGGCTTTCTTCCAACCAATTTTTGTAAAGTCTAAGTTCATGACTCAAATGCGACAAACATGGATT
* *
1268385 CTACTAATGATTTTCATTCTTTCTGTGATTTGGCACTATAAACACATTTTCCTCATTAGGATATA
580 CTACTAATGATTTTCATTCTTTCTGTGATTTGGCACAATAAACACATTTTCCTCATTAGGATACA
* * * *
1268450 TGATATTAATGCTTT-GCTTTCGCAATAAAGGCTTTCTTCCCACCGATTGTTGTAAAGTCTTAAG
645 TGATATTAATGCTTTGGC-TTCACAACAAAGGCTTTCTTCCAACCAATTGTTGTAAAGTC-TAAG
* **
1268514 TTCGCT-CCTCAAATGAGAGAAATATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATATGGC
708 TTCG-TGCCTCAAATGAGAGAAATATGGATTCTACTAATGATCTTCATTCTTTACGTGATATGGC
1268578 ACTAT
772 ACTAT
1268583 GAACACATTC
Statistics
Matches: 689, Mismatches: 78, Indels: 18
0.88 0.10 0.02
Matches are distributed among these distances:
896 3 0.00
897 249 0.36
898 432 0.63
899 5 0.01
ACGTcount: A:0.30, C:0.20, G:0.15, T:0.35
Consensus pattern (898 bp):
TTAGGATACATGATATTAAAGCTTTGATTTCGCAACAAAAGCTTTCTTCCCACCAATTGTTATAA
AGTCTAAGTTCGTGCCTCAAATCAGACAAATATGGATTCTAGTAATGATCTCCAATCTATTTGTG
ATAAGGCACAATAAACACAATCTCCGCATTACGATAAAAGACATTGAAGCTTTGCTTTTGCATGA
AAATCTTTTCTTTCCCCAATTATCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGA
TTCTCCAAACACTCTCCATTTTTTCCAAGATTGGGAAGCCAAAACACATTGCCTTCATTAGGATA
CACGACATTAATGCTTTAGGGTCACAAAGAAAGCTTTTCTTCCAGCCGTTTTTGATAGAATCAAA
GTTTGTCTCCTAAATAAGACAAACATGAATACTCACACTAATCCCCATTCTTTTCAGGGTTAGGC
ACCATAAACATAGTCTTCTCATTAGGATACATCATACTGAAGCATTGGTCCTGCAACAAAGGCTT
TCTTCCAACCAATTTTTGTAAAGTCTAAGTTCATGACTCAAATGCGACAAACATGGATTCTACTA
ATGATTTTCATTCTTTCTGTGATTTGGCACAATAAACACATTTTCCTCATTAGGATACATGATAT
TAATGCTTTGGCTTCACAACAAAGGCTTTCTTCCAACCAATTGTTGTAAAGTCTAAGTTCGTGCC
TCAAATGAGAGAAATATGGATTCTACTAATGATCTTCATTCTTTACGTGATATGGCACTATAAAG
GCTTTTTTCCCGCCATTTTTGATTGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACT
CACAAAAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATTGTCATCTCG
Found at i:1269150 original size:634 final size:634
Alignment explanation
Indices: 1267807--1269716 Score: 2936
Period size: 634 Copynumber: 3.0 Consensus size: 634
1267797 TGTCATCTCG
* * * *
1267807 TTAGGATACATGATATTAAAGCTTTGGTTTCGCAACAAAAGTTTTCTTCCCACCAATTGTTGTAA
1 TTAGGATATATGATATTAATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTGTTGTAA
* * * * * * *
1267872 AGTCTCAGTTCGTGCCTCAAATCAGCCATATATGGATTCTAGTATTGATCATCATTCTATTTGTG
66 AGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATTCTTTTTGTG
* * * * *
1267937 ATAAGGCACAATAAACACATTCTCCGCATTAGGATAATTGACATTGATGCTTTGCTTTTGCATGG
131 ATATGGCACTATAAACACATTCTCCGCATTAGGATAATTGACATTGATGTTTTTCTTTTGCATGA
* * * * *
1268002 AAATCTTTTCTTTGCCCAATTATCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGGATCGA
196 AAACCTTTTCTTTGCCCAATTATCCTTAAAATCAAAATTCTTCCCTTGAATAAGACAAGCATCGA
* * * * *
1268067 TTCTCCTAACACTCTCCATTTTTTCCAAGATTTGGAAGCCAAAACACATTGCCTTCATTAGGATA
261 TTCTCCTAACAATCTCCATTTTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTCTTTAGGATG
* * ** * *
1268132 CACGACATTAATGCTTTGGTGT-AGTAGGAAAAGCTTTT-TTTCCAGCCGTTTTTGATAGAATCA
326 CACGACATTGATGCTTTGGGGTCACAAGG-AAAGCTTTTCTTT-CTGCCGTTTTTGATAGAATCC
* * * * * * *
1268195 AAAGTTGTCTCCTAAATAAGA-AAGACGTGAATACTCACACTAAT-GCCATTCTTTTCAGGGTTA
389 AAATTTTTCTCTTAAATAAGACTA-ACATGAATACTCACACTAATCCCCATTCCTTTCAGGGTTA
*
1268258 GGCACCATAAACATAGTCTTCTCGTTAGGATACATGATATTGAAGCTTTGGTTTCGCAACAAAGG
453 GGCACCACAAACATAGTCTTCTCGTTAGGATACATGATATTGAAGCTTTGGTTTCGCAACAAAGG
* *
1268323 CTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGCGATAAACATGGATTCTA
518 CTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGCAACAAACATGGATTCTA
*
1268388 CTAATGATTTTCATTCTTTCTGTGATTTGGCACTATAAACACATTTTCCTCA
583 CTAATGATTTTCATTCTTTTTGTGATTTGGCACTATAAACACATTTTCCTCA
* * *
1268440 TTAGGATATATGATATTAATGCTTTGCTTTCGCAATAAAGGCTTTCTTCCCACCGATTGTTGTAA
1 TTAGGATATATGATATTAATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTGTTGTAA
*
1268505 AGTCTTAAGTTCGCT-CCTCAAATGAGAGAAATATGGATTCTAGTAATGATCTTCATTCTTTTTG
66 AGTC-TAAGTTCG-TGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATTCTTTTTG
* * *
1268569 TGATATGGCACTATGAACACATTCTCCACATTAGGATAATTGACATTGATATTTTTCTTTTGCAT
129 TGATATGGCACTATAAACACATTCTCCGCATTAGGATAATTGACATTGATGTTTTTCTTTTGCAT
1268634 GAAAACCTTTTCTTTGCCCAATTATCCTTAAAATCAAAATTCTTCCCTTGAATAAGACAAGCATC
194 GAAAACCTTTTCTTTGCCCAATTATCCTTAAAATCAAAATTCTTCCCTTGAATAAGACAAGCATC
*
1268699 GATTCTCCTAACAGTCTCCATTTTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTCTTTAGGA
259 GATTCTCCTAACAATCTCCATTTTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTCTTTAGGA
*
1268764 TGCACGACATTGATGCTTTGGGGTCACAAGGAAAGCTTTTCTTTCTGCCGTTTTTGATTGAATCC
324 TGCACGACATTGATGCTTTGGGGTCACAAGGAAAGCTTTTCTTTCTGCCGTTTTTGATAGAATCC
* * * *
1268829 AAATTTTTCTGTTAAACAAGACTAACATGAATACTCGCACTAATCCCCATTCCTTTGAGGGTTAG
389 AAATTTTTCTCTTAAATAAGACTAACATGAATACTCACACTAATCCCCATTCCTTTCAGGGTTAG
* * *
1268894 GCACCACAAACATAGTCTTCTCGTTTGGATACATGATATTGAAGCTTTGGTTTCGTAACAAAAGC
454 GCACCACAAACATAGTCTTCTCGTTAGGATACATGATATTGAAGCTTTGGTTTCGCAACAAAGGC
*
1268959 TTTCTTCCCACCAATTTTTGTAAAGCCTAAGTTCATGCCTCAAATGCAACAAACATGGATTCTAC
519 TTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGCAACAAACATGGATTCTAC
*
1269024 TAATGATTTTCATTCTTTTTGTGATTTGGCAGTATAAACACATTTTCCTCA
584 TAATGATTTTCATTCTTTTTGTGATTTGGCACTATAAACACATTTTCCTCA
* *
1269075 TTAGGATATATGATATTAATGATTTGGTTTCACAACAAAGGCTTTCTTCCCACCAATTGTTGTAA
1 TTAGGATATATGATATTAATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTGTTGTAA
* *
1269140 AGTCTAAGTTCGTGCCTCAAATGAAACAAATATGTATTCTAGTAATGATCTTCATT-TTTTTCGT
66 AGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATTCTTTTT-GT
* *
1269204 GATATGGCACTATAAACACATTCTCTGCATTAGGATTATTGACATTGATGTTTTTCTTTTGCATG
130 GATATGGCACTATAAACACATTCTCCGCATTAGGATAATTGACATTGATGTTTTTCTTTTGCATG
* *
1269269 AAAACCTTTTCTTTGCCCAGTTATCCTTAAACA-CAAACTTCTTCCCTTGAATAAGACAAGCATC
195 AAAACCTTTTCTTTGCCCAATTATCCTTAAA-ATCAAAATTCTTCCCTTGAATAAGACAAGCATC
1269333 GATTCTCCTAACAATCTCCATTTTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTCTTTAGGA
259 GATTCTCCTAACAATCTCCATTTTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTCTTTAGGA
* *
1269398 TGCACGACATTGATGCTTTGTGGTCACAAGGAAAGCTTTTCTTTCTGCCATTTTTGATAGAATCC
324 TGCACGACATTGATGCTTTGGGGTCACAAGGAAAGCTTTTCTTTCTGCCGTTTTTGATAGAATCC
* * * *
1269463 AAGTTTTTCTCTTAAATAAGACTAAAATGAATACTCACACTAGTCTCCATTCCTTTCAGGGTTAG
389 AAATTTTTCTCTTAAATAAGACTAACATGAATACTCACACTAATCCCCATTCCTTTCAGGGTTAG
*
1269528 GCACCACAAACATAGTCTTCTCATTAGGATACATGATATTGAAGCTTTGGTTTCGCAACAAAGGC
454 GCACCACAAACATAGTCTTCTCGTTAGGATACATGATATTGAAGCTTTGGTTTCGCAACAAAGGC
* * *
1269593 TTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTACCTCAAATG-AGACAAATATGGATTCTA
519 TTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGCA-ACAAACATGGATTCTA
* * * * *
1269657 GTAATGATCTTCATTCTTTTTGTGATATGGCACTATAAACACATTCTCCGCA
583 CTAATGATTTTCATTCTTTTTGTGATTTGGCACTATAAACACATTTTCCTCA
1269709 TTAGGATA
1 TTAGGATA
1269717 ATTGACATTG
Statistics
Matches: 1166, Mismatches: 101, Indels: 19
0.91 0.08 0.01
Matches are distributed among these distances:
633 69 0.06
634 834 0.72
635 263 0.23
ACGTcount: A:0.29, C:0.20, G:0.15, T:0.36
Consensus pattern (634 bp):
TTAGGATATATGATATTAATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTGTTGTAA
AGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATTCTTTTTGTG
ATATGGCACTATAAACACATTCTCCGCATTAGGATAATTGACATTGATGTTTTTCTTTTGCATGA
AAACCTTTTCTTTGCCCAATTATCCTTAAAATCAAAATTCTTCCCTTGAATAAGACAAGCATCGA
TTCTCCTAACAATCTCCATTTTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTCTTTAGGATG
CACGACATTGATGCTTTGGGGTCACAAGGAAAGCTTTTCTTTCTGCCGTTTTTGATAGAATCCAA
ATTTTTCTCTTAAATAAGACTAACATGAATACTCACACTAATCCCCATTCCTTTCAGGGTTAGGC
ACCACAAACATAGTCTTCTCGTTAGGATACATGATATTGAAGCTTTGGTTTCGCAACAAAGGCTT
TCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGCAACAAACATGGATTCTACTA
ATGATTTTCATTCTTTTTGTGATTTGGCACTATAAACACATTTTCCTCA
Found at i:1271624 original size:157 final size:157
Alignment explanation
Indices: 1271309--1271625 Score: 392
Period size: 157 Copynumber: 2.0 Consensus size: 157
1271299 ATATTGAAGC
* * *
1271309 TTTGGTTTCGCAACAAAAGCTTTCTTCCCACCAATTTTTGTAAAGCCTAAGTTCATGCCTCAAAT
1 TTTGATTTCACAACAAAAGCTTTCTTCCCACCAATTGTTGTAAAGCCTAAGTTCATGCCTCAAAT
** * * *
1271374 GCGACAAACAAGGATTCTACTAATGATTCTCATTCTTTTTGTGATTTGGCACTATAAACACATTT
66 GAAACAAACAAGGATTCTACTAATGATTCTCATTCTTTTTGAGATATGGCACTATAAACACATTC
*
1271439 TCCTCATTAGGATATATGATATTAATG
131 TCCTCATTAGGATATATGACATTAATG
* * * *
1271466 TTTGATTTCACAACAAAGGCTTTCTTTCCACCAATTGTTGTAAAGTCTAAGTTCGTGCCTCAAAT
1 TTTGATTTCACAACAAAAGCTTTCTTCCCACCAATTGTTGTAAAGCCTAAGTTCATGCCTCAAAT
* * * *
1271531 GAAACAAATATGTATTCTAGTAATGA-TCTTCATT-TTTTTCGCAG-TATGGCACTATAAACACA
66 GAAACAAACAAGGATTCTACTAATGATTC-TCATTCTTTTT-G-AGATATGGCACTATAAACACA
*
1271593 TTCT-CTGCATTAGGAT-TATTGACATTGATG
128 TTCTCCT-CATTAGGATATA-TGACATTAATG
1271623 TTT
1 TTT
1271626 TTCTTTTGCA
Statistics
Matches: 137, Mismatches: 18, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
156 11 0.08
157 125 0.91
158 1 0.01
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.38
Consensus pattern (157 bp):
TTTGATTTCACAACAAAAGCTTTCTTCCCACCAATTGTTGTAAAGCCTAAGTTCATGCCTCAAAT
GAAACAAACAAGGATTCTACTAATGATTCTCATTCTTTTTGAGATATGGCACTATAAACACATTC
TCCTCATTAGGATATATGACATTAATG
Found at i:1271792 original size:633 final size:634
Alignment explanation
Indices: 1269547--1272051 Score: 3659
Period size: 633 Copynumber: 4.0 Consensus size: 634
1269537 ACATAGTCTT
* *
1269547 CTCATTAGGATACATGATATTGAA-GCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTTT
1 CTCATTAGGATACATGATATT-AATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCAACCAATTGT
1269611 TGTAAAGTCTAAGTTCGTACCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATTCTTT
65 TGTAAAGTCTAAGTTCGTACCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATT-TTT
* **
1269676 TTGTGATATGGCACTATAAACACATTCTCCGCATTAGGATAATTGACATTGA------T-AATTG
129 TTGAGATATGGCACTATAAACACATTCTCCGCATTAGGATAATTGACATTGATGTTTTTCTTTTG
* * *
1269734 CGTGAAAACCTTTTCTTTGCCCAATTATCTTTAAAATCAAAGTTCTCCCCTTGAATAAGACAAGC
194 CATGAAAACCTTTTCTTTGCCCAATTATCCTTAAAATCAAAGTTCTTCCCTTGAATAAGACAAGC
* *
1269799 ATCGATTCTGCTAACAGTCTCCATTTTTTTTCAAGATTGGGAAGCCAAAACACAATGCCTTCTTT
259 ATCGATTCTCCTAACAGTCTCCA-TTTTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTCTTT
*
1269864 AGGATGCATGACATTGATGCTTTGGGGTCACAAGGAAAGCTTTTC-TTCT-TGCAGTTTTTGATA
323 AGGATGCACGACATTGATGCTTTGGGGTCACAAGGAAAGCTTTTCTTTCTGT-CAGTTTTTGATA
* * * * * *
1269927 GAATGCAAGTTATTCTCTTAAATAAGACTAACATGAATACTCACACTAGTCCCCATTCTTTTAAG
387 GAATCCAAATTTTTCTCTTAAATAAGACTAACATGAATACTCACACTAATCCCCATTCCTTTCAG
* * * * ** * * * * *
1269992 GGTTAGGTACCATAAATATAGTTTTCTTATTAGCATACAGGATACTGAAGCATTGGTTTTGCAAC
452 GGTTAGGCACCACAAACATAGTCTTCTCGTTAGGATACATGATATTGAAGCTTTGGTTTCGCAAC
* *
1270057 AAAGGCTTTCTTCCCACCAGTTTTTAT-AAGTCTAAGTTCATGCCTCAAATGCGACAAACATGGA
517 AAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGCGACAAACATGGA
* * * * *
1270121 TTCTACTGATGATTTTCGTTCTTTTTGTGATTTGGCACAATAAACACATTTTT
582 TTCTACTAATGATTCTCATTCTTTTTGTGATTTGGCACTATAAACACATTTTC
* *
1270174 GTCATTAGGATACATGACATTAATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCAACCAATTGTT
1 CTCATTAGGATACATGATATTAATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCAACCAATTGTT
* * *
1270239 GTAAAGTCTAAGTTTGTACCTCCAATGAGACAAATATGGATTTTAGTAATGATCTTCATTTTTTT
66 GTAAAGTCTAAGTTCGTACCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATTTTTTT
* * *
1270304 GTGATATGGCACTATAAACACATTCTCCGCATTAGGATTATTGACATTGATGTTTTTCTTTTGCG
131 GAGATATGGCACTATAAACACATTCTCCGCATTAGGATAATTGACATTGATGTTTTTCTTTTGCA
* * *
1270369 TGAAAACCTTTTCTTTGCCCAATTATCTTTAAAATCAAAGTT-TTCCCTTGGATAAGACAGGCAT
196 TGAAAACCTTTTCTTTGCCCAATTATCCTTAAAATCAAAGTTCTTCCCTTGAATAAGACAAGCAT
* * *
1270433 CGATTCTCCTAACAGTCTCAATTTTTTCCAAGATTGGGAAGCCAAAACACATTGCCTTCATTAGG
261 CGATTCTCCTAACAGTCTCCATTTTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTCTTTAGG
* * ** *
1270498 ATACACGACATTGATGCTTTGGTGTC-GTAGGAAAAGCTTTT-TTTCTAG-CTGTTTTTGATAGA
326 ATGCACGACATTGATGCTTTGGGGTCACAAGG-AAAGCTTTTCTTTCT-GTCAGTTTTTGATAGA
* * * ** * * *
1270560 ATCAAAAGTTGTCTCCCAAATAAGA-AAGACGTGAATACTCACACTAATCCCCATTCTTTTCAGG
389 ATCCAAATTTTTCTCTTAAATAAGACTA-ACATGAATACTCACACTAATCCCCATTCCTTTCAGG
*
1270624 GTTAGGCACCATAAACATAGTCTTCTCGTTAGGATACATGATATTGAAGCTTTGGTTTCGCAACA
453 GTTAGGCACCACAAACATAGTCTTCTCGTTAGGATACATGATATTGAAGCTTTGGTTTCGCAACA
* *
1270689 AAGGCTTTCTTCCTACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGCGATAAACATGGAT
518 AAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGCGACAAACATGGAT
* *
1270754 TCTACTAATGATTTTCATTCTTTCTGTGATTTGGCACTATAAACACATTTTC
583 TCTACTAATGATTCTCATTCTTTTTGTGATTTGGCACTATAAACACATTTTC
* * * * * * * * *
1270806 CGCACTAAGATATATGATAGTAATGCTTTGCTTTCGCAATAAAGGCTTTCTTCCGACCGATTGTT
1 CTCATTAGGATACATGATATTAATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCAACCAATTGTT
* * * * *
1270871 GCAAAGTCTTAACTTCGCACCTCAAATGAGACAAATATGGATTGTAGTAATGATCTTCACTCTTT
66 GTAAAGTC-TAAGTTCGTACCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCA-TTTTT
* * *
1270936 TTGTGATATGGCACTATGAACACATTCTCCGCATTAGGATAATTGACATTGATATTTTTCTTTTG
129 TTGAGATATGGCACTATAAACACATTCTCCGCATTAGGATAATTGACATTGATGTTTTTCTTTTG
*
1271001 CATGAAAACCTTTTCTTTACCCAATTATCCTTAAAATCAAAGTTCTTCCCTTGAATAAGACAAGC
194 CATGAAAACCTTTTCTTTGCCCAATTATCCTTAAAATCAAAGTTCTTCCCTTGAATAAGACAAGC
*
1271066 ATCGACTCTCCTAACAGTCTCCATTTTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTCTTTA
259 ATCGATTCTCCTAACAGTCTCCATTTTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTCTTTA
1271131 GGATGCACGACATTGATGCTTTGGGGTCACAAGGAAAGCTTTTCTTTCTGTC-GTTTTTGATAGA
324 GGATGCACGACATTGATGCTTTGGGGTCACAAGGAAAGCTTTTCTTTCTGTCAGTTTTTGATAGA
* * *
1271195 ATCCAAATTTTTCTGTTAAACAAGACTAACATGAATACTCGCACTAATCCCCATTCCTTTCAGGG
389 ATCCAAATTTTTCTCTTAAATAAGACTAACATGAATACTCACACTAATCCCCATTCCTTTCAGGG
* *
1271260 TTAGGCACCACAAACACAGTCTTCTCGTTTGGATACATGATATTGAAGCTTTGGTTTCGCAACAA
454 TTAGGCACCACAAACATAGTCTTCTCGTTAGGATACATGATATTGAAGCTTTGGTTTCGCAACAA
* * *
1271325 AAGCTTTCTTCCCACCAATTTTTGTAAAGCCTAAGTTCATGCCTCAAATGCGACAAACAAGGATT
519 AGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGCGACAAACATGGATT
1271390 CTACTAATGATTCTCATTCTTTTTGTGATTTGGCACTATAAACACATTTTC
584 CTACTAATGATTCTCATTCTTTTTGTGATTTGGCACTATAAACACATTTTC
* * *
1271441 CTCATTAGGATATATGATATTAATG-TTTGATTTCACAACAAAGGCTTTCTTTCC-ACCAATTGT
1 CTCATTAGGATACATGATATTAATGCTTTGGTTTCGCAACAAAGGCTTTC-TTCCAACCAATTGT
* * *
1271504 TGTAAAGTCTAAGTTCGTGCCTCAAATGAAACAAATATGTATTCTAGTAATGATCTTCATTTTTT
65 TGTAAAGTCTAAGTTCGTACCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATTTTTT
* *
1271569 TCGCAG-TATGGCACTATAAACACATTCTCTGCATTAGGATTATTGACATTGATGTTTTTCTTTT
130 T-G-AGATATGGCACTATAAACACATTCTCCGCATTAGGATAATTGACATTGATGTTTTTCTTTT
* * * *
1271633 GCATGAAAACCTTTTCTTTGCCTAAGTATCCTTAAAAACAAACTTCTTCCCTTGAATAAGACAAG
193 GCATGAAAACCTTTTCTTTGCCCAATTATCCTTAAAATCAAAGTTCTTCCCTTGAATAAGACAAG
* * *
1271698 CATCGATTCTCCTAACAATCTCCATTTTTTTCAAGATTGGGAAGCCAAAACACATTGCTTTGTTT
258 CATCGATTCTCCTAACAGTCTCCATTTTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTCTTT
*
1271763 AGGATGCACGACATTGATGCTTTGGGGTCACAAGGAAAGCTTTTCTTTCTGCCA-TTTTTGATAG
323 AGGATGCACGACATTGATGCTTTGGGGTCACAAGGAAAGCTTTTCTTTCTGTCAGTTTTTGATAG
* * * *
1271827 AATCCAAGTTTTTCTCTTAAATAAGACTAAAATGACTACTCACACTAGTCCCCATTCCTTTCAGG
388 AATCCAAATTTTTCTCTTAAATAAGACTAACATGAATACTCACACTAATCCCCATTCCTTTCAGG
1271892 GTTAGGCACCACAAACATAGTCTTCTCGTTAGGATACATGATATTGAAGCTTTGGTTTCGCAACA
453 GTTAGGCACCACAAACATAGTCTTCTCGTTAGGATACATGATATTGAAGCTTTGGTTTCGCAACA
* * *
1271957 AAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAAGATGGAT
518 AAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGCGACAAACATGGAT
* **
1272022 TCTAGTGTTGA-TCATCATTCTTTTTGTGAT
583 TCTACTAATGATTC-TCATTCTTTTTGTGAT
1272052 AAGGAAGTAT
Statistics
Matches: 1693, Mismatches: 159, Indels: 46
0.89 0.08 0.02
Matches are distributed among these distances:
626 56 0.03
627 115 0.07
630 4 0.00
631 218 0.13
632 192 0.11
633 578 0.34
634 145 0.09
635 375 0.22
636 10 0.01
ACGTcount: A:0.29, C:0.20, G:0.16, T:0.36
Consensus pattern (634 bp):
CTCATTAGGATACATGATATTAATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCAACCAATTGTT
GTAAAGTCTAAGTTCGTACCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATTTTTTT
GAGATATGGCACTATAAACACATTCTCCGCATTAGGATAATTGACATTGATGTTTTTCTTTTGCA
TGAAAACCTTTTCTTTGCCCAATTATCCTTAAAATCAAAGTTCTTCCCTTGAATAAGACAAGCAT
CGATTCTCCTAACAGTCTCCATTTTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTCTTTAGG
ATGCACGACATTGATGCTTTGGGGTCACAAGGAAAGCTTTTCTTTCTGTCAGTTTTTGATAGAAT
CCAAATTTTTCTCTTAAATAAGACTAACATGAATACTCACACTAATCCCCATTCCTTTCAGGGTT
AGGCACCACAAACATAGTCTTCTCGTTAGGATACATGATATTGAAGCTTTGGTTTCGCAACAAAG
GCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGCGACAAACATGGATTCT
ACTAATGATTCTCATTCTTTTTGTGATTTGGCACTATAAACACATTTTC
Found at i:1272400 original size:633 final size:627
Alignment explanation
Indices: 1269862--1273035 Score: 1792
Period size: 633 Copynumber: 5.0 Consensus size: 627
1269852 AATGCCTTCT
*
1269862 TTAGGATGCATGACATTGATGCTTTGGGGTCACAAGGAAAGCTTTTC-TTCTTG-CAGTTTTTGA
1 TTAGGATGCACGACATTGATGCTTTGGGGTCACAAGGAAAGCTTTTCTTTC-TGCCA-TTTTTGA
* * * * * *
1269925 TAGAATGCAAGTTATTCTCTTAAATAAGACTAACATGAATACTCACACTAGTCCCCATTCTTTTA
64 TAGAATCCAAGTTTTTCTCTTAAATAAGACTAAAATG-ATACTCACACTAATCCCCATTCCTTTC
* * * * ** * * * * *
1269990 AGGGTTAGGTACCATAAATATAGTTTTCTTATTAGCATACAGGATACTGAAGCATTGGTTTTGCA
128 AGGGTTAGGCACCACAAACATAGTCTTCTCGTTAGGATACATGATATTGAAGCTTTGGTTTCGCA
* * * *
1270055 ACAAAGGCTTTCTTCCCACCAGTTTTTAT-AAGTCTAAGTTCATGCCTCAAATGCGACAAACATG
193 ACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATG
* * * * * * * **
1270119 GATTCTACTGATGATTTTCGTTCTTTTTGTGATTTGGCACAATAAACACATTTTTGTCATTAGGA
258 GATTCTAGTAATGA-TCTCATTCTTTTTGTGATATGGCACTATAAACACATTCTCCTCATTAGGA
* ** ** ** * *
1270184 TACA-TGACATTAATGCTTTGGTTTCGCAACAAAGGC-TTTC-TTCCAACCAATTGTT-GTAAAG
322 TA-ATTGACATTGATG-TTTTCTTTCGCATGAAAATCTTTTCTTTCC--CCAATT-TTCCTAAAA
** ** * ** * * * * * ** * * **
1270245 TCTAAGTTTGTACCTCCAATGAGACAAA-TATGGATTTTAGTAA-TGATCTTCATTTTTTT--GT
382 TGAAAGTTCATCCCTTGATTAAGA-AAAGCATCGATTCTCCTAACAG-TC-TCCTTTTTTTCCAA
* * * * ** *
1270306 GATAT-GGCA-CTATAAACACATT-CTCCGCATTAGGATTA-TTGACATTGATGTTTTTCTTTTG
444 GAT-TGGGAAGCCA-AAACACATTCCT-C-CATTAGGA-TACATGACATTGATG-CTTTGGTGTG
** * * * * **
1270367 CGTGAAAACCTTTTCTT--TGCCCAATTATCTTTAA-AATCAAAGTTTTCC-CTTGGATAAGACA
503 CAAGAAAAGCTTTTCTTCCTG-TC-GTT-T-TTGAAGAATCAAAGTTTTCCTCTTAAATAAGACA
** * * * * * * * * *
1270428 GGCATCG-ATTCTC-CTAAC-AGT-CTCAAT-TTTTTCCAAGATTGGGAAGCCAAAACACATTGC
564 AACAT-GAATACTCAC--ACTAATCCCCAATCTTTTT--AGGGTTAGGAA-CCATAACATAGT-C
* *
1270488 CT-TCA
622 TTCTCG
* * ** **
1270493 TTAGGATACACGACATTGATGCTTTGGTGTC-GTAGGAAAAGCTTTT-TTTCTAGCTGTTTTTGA
1 TTAGGATGCACGACATTGATGCTTTGGGGTCACAAGG-AAAGCTTTTCTTTCT-GCCATTTTTGA
* * ** * *
1270556 TAGAATCAAAAG-TTGTCTCCCAAATAAGA--AAGACGTGAATACTCACACTAATCCCCATTCTT
64 TAGAATC-CAAGTTTTTCTCTTAAATAAGACTAA-A-ATG-ATACTCACACTAATCCCCATTCCT
*
1270618 TTCAGGGTTAGGCACCATAAACATAGTCTTCTCGTTAGGATACATGATATTGAAGCTTTGGTTTC
125 TTCAGGGTTAGGCACCACAAACATAGTCTTCTCGTTAGGATACATGATATTGAAGCTTTGGTTTC
* * * *
1270683 GCAACAAAGGCTTTCTTCCTACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGCGATAAAC
190 GCAACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAAC
* * * * * * *
1270748 ATGGATTCTACTAATGATTTTCATTCTTTCTGTGATTTGGCACTATAAACACATTTTCCGCACTA
255 ATGGATTCTAGTAATGA-TCTCATTCTTTTTGTGATATGGCACTATAAACACATTCTCCTCATTA
* * * * * ** * *
1270813 AGAT-ATATGATAGTAATGCTTTGCTTTCGCAAT-AAAGGC-TTTC-TTCCGACCGATTGTTGC-
319 GGATAAT-TGACATTGATG-TTTTCTTTCGC-ATGAAAATCTTTTCTTTCC--CCAATT-TTCCT
* ** * * ** * * * * * ** * *
1270873 AAAGTCTTAACTTC-GCACCTCAAATGAGACAAA-TATGGATTGTAGTAA-TGATCTTCACTCTT
378 AAAAT-GAAAGTTCATC-CCTTGATTAAGA-AAAGCATCGATTCTCCTAACAG-TC-TC-CTTTT
** * * * **
1270935 TTT--GTGATAT-GGCA-CTATGAACACATT-CTCCGCATTAGGATA-ATTGACATTGATATTTT
437 TTTCCAAGAT-TGGGAAGCCA-AAACACATTCCT-C-CATTAGGATACA-TGACATTGAT-GCTT
** * * * ** ** ** *
1270994 TCTTTTGCATGAAAACCTTTTCTTTACCCAATTATCCTT-AA-AATCAAAGTTCTTCC-CTTGAA
496 TGGTGTGCAAGAAAAGCTTTTC-TT--CCTGTCGTTTTTGAAGAATCAAAGTT-TTCCTCTTAAA
* * * * * * * * *
1271056 TAAGACAAGCATCGACT-CTC-CTAAC-AGTCTCC-ATTTTTTTCAAGATTGGGAAGCCAAAACA
557 TAAGACAAACAT-GAATACTCAC--ACTAATCCCCAATCTTTTT-AGGGTTAGGAA-CC-ATA-A
* *
1271117 CATTGCCTTCT--
615 CATAGTCTTCTCG
* *
1271128 TTAGGATGCACGACATTGATGCTTTGGGGTCACAAGGAAAGCTTTTCTTTCTGTCGTTTTTGATA
1 TTAGGATGCACGACATTGATGCTTTGGGGTCACAAGGAAAGCTTTTCTTTCTGCCATTTTTGATA
* * * * *
1271193 GAATCCAAATTTTTCTGTTAAACAAGACTAACATGAATACTCGCACTAATCCCCATTCCTTTCAG
66 GAATCCAAGTTTTTCTCTTAAATAAGACTAAAATG-ATACTCACACTAATCCCCATTCCTTTCAG
* *
1271258 GGTTAGGCACCACAAACACAGTCTTCTCGTTTGGATACATGATATTGAAGCTTTGGTTTCGCAAC
130 GGTTAGGCACCACAAACATAGTCTTCTCGTTAGGATACATGATATTGAAGCTTTGGTTTCGCAAC
* * * * *
1271323 AAAAGCTTTCTTCCCACCAATTTTTGTAAAGCCTAAGTTCATGCCTCAAATGCGACAAACAAGGA
195 AAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGA
* * *
1271388 TTCTACTAATGATTCTCATTCTTTTTGTGATTTGGCACTATAAACACATTTTCCTCATTAGGAT-
260 TTCTAGTAATGA-TCTCATTCTTTTTGTGATATGGCACTATAAACACATTCTCCTCATTAGGATA
* * ** * ** ** * * **
1271452 ATATGATATTAATGTTTGATTTCACAACAAAGGC-TTTCTTTCCACCAATTGTT-GTAAAGTCTA
324 AT-TGACATTGATGTTTTCTTTCGCATGAAAATCTTTTCTTTCC-CCAATT-TTCCTAAAATGAA
* * ** * * ** * *
1271515 AGTTCGTGCCTCAAATGAA-ACAAA-TAT-GTATTCTAGTAA-TGATCTTCATTTTTTTCGC-AG
386 AGTTCATCCCT-TGATTAAGA-AAAGCATCG-ATTCTCCTAACAG-TC-TCCTTTTTTTC-CAAG
* * * * * ** *
1271575 -TAT-GGCA-CTATAAACACATTCTCTGCATTAGGATTA-TTGACATTGATGTTTTTCTTTTGCA
445 AT-TGGGAAGCCA-AAACACATTC-CTCCATTAGGA-TACATGACATTGATG-CTTTGGTGTGCA
* * * ** * * *
1271636 TGAAAACCTTTTCTTTGCCTAAGT-ATCCTT-AA-AAACAAACTTCTTCC-CTTGAATAAGACAA
505 AGAAAAGCTTTTC-TT-CCT--GTCGTTTTTGAAGAATCAAAGTT-TTCCTCTTAAATAAGACAA
* * * * * * * * * *
1271697 GCATCG-ATTCTC-CTAAC-AATCTCC-ATTTTTTTCAAGATTGGGAAGCCAAAACACATTGCTT
565 ACAT-GAATACTCAC--ACTAATCCCCAATCTTTTT-AGGGTTAGGAA-CCATAACATAGT-CTT
1271758 -T-G
624 CTCG
1271760 TTTAGGATGCACGACATTGATGCTTTGGGGTCACAAGGAAAGCTTTTCTTTCTGCCATTTTTGAT
1 -TTAGGATGCACGACATTGATGCTTTGGGGTCACAAGGAAAGCTTTTCTTTCTGCCATTTTTGAT
*
1271825 AGAATCCAAGTTTTTCTCTTAAATAAGACTAAAATGACTACTCACACTAGTCCCCATTCCTTTCA
65 AGAATCCAAGTTTTTCTCTTAAATAAGACTAAAATGA-TACTCACACTAATCCCCATTCCTTTCA
1271890 GGGTTAGGCACCACAAACATAGTCTTCTCGTTAGGATACATGATATTGAAGCTTTGGTTTCGCAA
129 GGGTTAGGCACCACAAACATAGTCTTCTCGTTAGGATACATGATATTGAAGCTTTGGTTTCGCAA
*
1271955 CAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAAGATGG
194 CAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGG
** * * * * * *
1272020 ATTCTAGTGTTGATCATCATTCTTTTTGTGATAAGGAAGTATAAATAGATTCTCCGCATTAGGAT
259 ATTCTAGTAATGATC-TCATTCTTTTTGTGATATGGCACTATAAACACATTCTCCTCATTAGGAT
* * *
1272085 AATTGACATTGATGTTTTCTTTGGCATGGAAATCTTTTCTTTGCCCAATTATTCCTAAAATGAAA
323 AATTGACATTGATGTTTTCTTTCGCATGAAAATCTTTTCTTTCCCCAATT-TTCCTAAAATGAAA
1272150 GTTCATCCCTTGATTAAGAAAAGCATCGATTCTCCTAACAGTCTCCTTTTTTTCCAAGATTGGGA
387 GTTCATCCCTTGATTAAGAAAAGCATCGATTCTCCTAACAGTCTCCTTTTTTTCCAAGATTGGGA
* * *
1272215 AGCCAAAACACATTACCTCCGTTAGGAAACACGACATTGATGCTTTGGTGCTGCAAGAAAAGCTT
452 AGCCAAAACACATT-CCTCCATTAGGATACATGACATTGATGCTTTGGTG-TGCAAGAAAAGCTT
*
1272280 TTCTTCCTGTCGTTTTTGAGAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATACTCAC
515 TTCTTCCTGTCGTTTTTGA-AGAATCAAAGTTTTCCTCTTAAATAAGACAAACATGAATACTCAC
*
1272345 ACTAATCCCCAATCTTTTTAGGGTTAGGCACCATAACATAGTCTTCTCG
579 ACTAATCCCCAATCTTTTTAGGGTTAGGAACCATAACATAGTCTTCTCG
* * * ** ** * * * * **
1272394 TTAGGATACATGATATTGAAT-CTTTGGTTTTGCAA-CAAAGGC-TTCCCTCCCACCAGTTTTTG
1 TTAGGATGCACGACATTG-ATGCTTTGGGGTCACAAGGAAA-GCTTTTCTTTCTGCCA-TTTTTG
* * * ** * ***
1272456 A-A-AAGTCTAAG-TTTTCATGCCTCAAGTGCGAC-AAACATGGATTCTCTA-A-TAATTTTCAT
63 ATAGAA-TCCAAGTTTTTC-T--CTTAAATAAGACTAAA-AT-GATACTC-ACACTAATCCCCAT
* *** * * * * * * * *
1272515 TCTTTTTTTGATTTGGCACTATAAACACT--TTTTCCTCATTAGGATACATGATATTCATGCTTT
121 TCCTTTCAGGGTTAGGCACCACAAACA-TAGTCTT-CTCGTTAGGATACATGATATTGAAGCTTT
* * * * * *
1272578 GATTTGGCAACAAAGGCTTTCTTCCCACCAATTGTTATAAAGTCTATGTTGGTGCCTCAAATGAG
184 GGTTTCGCAACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAG
* * *
1272643 ACAAATATGGATTCTAGTAATGATCTCGAATCTTTTTGTGATATGGCACTATAAACACAATCTCC
249 ACAAACATGGATTCTAGTAATGATCTC-ATTCTTTTTGTGATATGGCACTATAAACACATTCTCC
* ** * * *
1272708 TCATTACGATAAAAGACATTGAAGTTTTTCTTTTGCATGAAAATCTTTTCTTTCCCCTATTTTCC
313 TCATTAGGATAATTGACATTGATG-TTTTCTTTCGCATGAAAATCTTTTCTTTCCCCAATTTTCC
* * * *
1272773 TTAAAATGAAAGTTCTTCCCTTGAATAAGACAAGCATCGATTCTCCAAACAGTCTCCATTTTTTT
377 -TAAAATGAAAGTTCATCCCTTGATTAAGAAAAGCATCGATTCTCCTAACAGTCTCC-TTTTTTT
* * *
1272838 -CAAGATTGGGAAGCCAAAACACATTGCCTTCTTTAGGATGCATGACATTGATGCTTTAGG-GT-
440 CCAAGATTGGGAAGCCAAAACACATT-CCTCCATTAGGATACATGACATTGATGCTTT-GGTGTG
* * * * *
1272900 CACAAAGAAAGCTTTTCTTCCCGTCGTTTTTGATAGAATCCAAGTTTTTCTCTTAAATAAGACTA
503 CA-AGA-AAAGCTTTTCTTCCTGTCGTTTTTGA-AGAATCAAAGTTTTCCTCTTAAATAAGACAA
* ** * * *
1272965 ACATGAATACTCACACTAATCCCCATTCTTTTCCGGGTTAGGTACCATAAATATAGTCTTCTCA
565 ACATGAATACTCACACTAATCCCCAATCTTTTTAGGGTTAGGAACCAT-AACATAGTCTTCTCG
1273029 TTAGGAT
1 TTAGGAT
1273036 ACATCATACT
Statistics
Matches: 2136, Mismatches: 307, Indels: 196
0.81 0.12 0.07
Matches are distributed among these distances:
629 2 0.00
630 7 0.00
631 190 0.09
632 194 0.09
633 812 0.38
634 508 0.24
635 395 0.18
636 20 0.01
637 8 0.00
ACGTcount: A:0.29, C:0.20, G:0.16, T:0.36
Consensus pattern (627 bp):
TTAGGATGCACGACATTGATGCTTTGGGGTCACAAGGAAAGCTTTTCTTTCTGCCATTTTTGATA
GAATCCAAGTTTTTCTCTTAAATAAGACTAAAATGATACTCACACTAATCCCCATTCCTTTCAGG
GTTAGGCACCACAAACATAGTCTTCTCGTTAGGATACATGATATTGAAGCTTTGGTTTCGCAACA
AAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGAT
TCTAGTAATGATCTCATTCTTTTTGTGATATGGCACTATAAACACATTCTCCTCATTAGGATAAT
TGACATTGATGTTTTCTTTCGCATGAAAATCTTTTCTTTCCCCAATTTTCCTAAAATGAAAGTTC
ATCCCTTGATTAAGAAAAGCATCGATTCTCCTAACAGTCTCCTTTTTTTCCAAGATTGGGAAGCC
AAAACACATTCCTCCATTAGGATACATGACATTGATGCTTTGGTGTGCAAGAAAAGCTTTTCTTC
CTGTCGTTTTTGAAGAATCAAAGTTTTCCTCTTAAATAAGACAAACATGAATACTCACACTAATC
CCCAATCTTTTTAGGGTTAGGAACCATAACATAGTCTTCTCG
Found at i:1272517 original size:475 final size:476
Alignment explanation
Indices: 1271445--1272560 Score: 1338
Period size: 475 Copynumber: 2.3 Consensus size: 476
1271435 ATTTTCCTCA
* * * * * * * *
1271445 TTAGGATATATGATATT-AATG-TTTGATTTCACAACAAAGGCTTTCTTTCCACCAATTGTTGTA
1 TTAGGATACATGATATTGAA-GCTTTGGTTTCGCAACAAAGGCTTCCCTCCCACCAATTTTTGAA
* * * * * * *
1271508 AAGTCTAAGTTCGTGCCTCAAATGAAACAAATATGTATTCTAGTAATGATCTTCATT-TTTTTCG
65 AAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTACTAATAATCATCATTCTTTTT-G
* * * * * * *
1271572 -CAGTATGGCACTATAAACACATTCTCTGCATTAGGATTATTGACATTGATGTTTTTCTTTTGCA
129 TGA-TAAGGAAGTATAAACACATTCTCCGCATTAGGATAATTGACATTGATGTTTTTCTTTGGCA
* * *
1271636 TGAAAACCTTTTCTTTGCCTAAGTATCCTTAAAAACAAACTTCTTCCCTTGAATAAGACAAGCAT
193 TGAAAACCTTTTCTTTGCCCAAGTATCCTTAAAAACAAACTTCATCCCTTGAATAAGAAAAGCAT
* **
1271701 CGATTCTCCTAACAATCTCCATTTTTTTCAAGATTGGGAAGCCAAAACACATTGCTTTGTTTAGG
258 CGATTCTCCTAACAATCTCCATTTTTTTCAAGATTGGGAAGCCAAAACACATTCCTCCGTTTAGG
** * * * *
1271766 ATGCACGACATTGATGCTTTGGGGTCACAAGGAAAGCTTTTCTTTCTGCCATTTTTGATAGAATC
323 AAACACGACATTGATGCTTTGGGCTCACAAGAAAAGCTTTTCTTCCTGCCATTTTTGAGAGAATC
* ** * * *
1271831 CAAGTTTTTCTCTTAAATAAGACTAAAATGACTACTCACACTAGTCCCCATTCCTTTCAGGGTTA
388 AAAGTTTGCCTCTTAAATAAGACTAAAATGAATACTCACACTAATCCCCAATCCTTTCAGGGTTA
1271896 GGCACCACAAACATAGTCTTCTCG
453 GGCACCACAAACATAGTCTTCTCG
* * *
1271920 TTAGGATACATGATATTGAAGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTTTTGTAA
1 TTAGGATACATGATATTGAAGCTTTGGTTTCGCAACAAAGGCTTCCCTCCCACCAATTTTTGAAA
* * * ** *
1271985 AGTCTAAGTTCGTGCCTCAAATGAGACAAAGATGGATTCTAGTGTTGATCATCATTCTTTTTGTG
66 AGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTACTAATAATCATCATTCTTTTTGTG
* * *
1272050 ATAAGGAAGTATAAATAGATTCTCCGCATTAGGATAATTGACATTGATG-TTTTCTTTGGCATGG
131 ATAAGGAAGTATAAACACATTCTCCGCATTAGGATAATTGACATTGATGTTTTTCTTTGGCATGA
* * ** * *
1272114 AAATCTTTTCTTTGCCCAATTATTCC-TAAAATGAAAGTTCATCCCTTGATTAAGAAAAGCATCG
196 AAACCTTTTCTTTGCCCAAGTA-TCCTTAAAAACAAACTTCATCCCTTGAATAAGAAAAGCATCG
*
1272178 ATTCTCCTAACAGTCTCC-TTTTTTTCCAAGATTGGGAAGCCAAAACACATTACCTCCG-TTAGG
260 ATTCTCCTAACAATCTCCATTTTTTT-CAAGATTGGGAAGCCAAAACACATT-CCTCCGTTTAGG
* * *
1272241 AAACACGACATTGATGCTTTGGTGCT-GCAAGAAAAGCTTTTCTTCCTGTCGTTTTTGAGAGAAT
323 AAACACGACATTGATGCTTTGG-GCTCACAAGAAAAGCTTTTCTTCCTGCCATTTTTGAGAGAAT
* *
1272305 CAAAGTTTGCCTCTTAAATAAGAC-AAACATGAATACTCACACTAATCCCCAATCTTTTTAGGGT
387 CAAAGTTTGCCTCTTAAATAAGACTAAA-ATGAATACTCACACTAATCCCCAATCCTTTCAGGGT
*
1272369 TAGGCACCA-TAACATAGTCTTCTCG
451 TAGGCACCACAAACATAGTCTTCTCG
* * *
1272394 TTAGGATACATGATATTGAATCTTTGGTTTTGCAACAAAGGCTTCCCTCCCACCAGTTTTTGAAA
1 TTAGGATACATGATATTGAAGCTTTGGTTTCGCAACAAAGGCTTCCCTCCCACCAATTTTTGAAA
* * ** *
1272459 AGTCTAAGTTTTCATGCCTCAAGTGCGACAAACATGGATTCT-CTAATAATTTTCATTCTTTTTT
66 AGTCTAAG--TTCATGCCTCAAATGAGACAAACATGGATTCTACTAATAATCATCATTCTTTTTG
** * * * * *
1272523 TGATTTGGCACTATAAACACTTTTTCCTCATTAGGATA
129 TGATAAGGAAGTATAAACACATTCTCCGCATTAGGATA
1272561 CATGATATTC
Statistics
Matches: 552, Mismatches: 78, Indels: 22
0.85 0.12 0.03
Matches are distributed among these distances:
474 92 0.17
475 285 0.52
476 169 0.31
477 6 0.01
ACGTcount: A:0.29, C:0.20, G:0.16, T:0.36
Consensus pattern (476 bp):
TTAGGATACATGATATTGAAGCTTTGGTTTCGCAACAAAGGCTTCCCTCCCACCAATTTTTGAAA
AGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTACTAATAATCATCATTCTTTTTGTG
ATAAGGAAGTATAAACACATTCTCCGCATTAGGATAATTGACATTGATGTTTTTCTTTGGCATGA
AAACCTTTTCTTTGCCCAAGTATCCTTAAAAACAAACTTCATCCCTTGAATAAGAAAAGCATCGA
TTCTCCTAACAATCTCCATTTTTTTCAAGATTGGGAAGCCAAAACACATTCCTCCGTTTAGGAAA
CACGACATTGATGCTTTGGGCTCACAAGAAAAGCTTTTCTTCCTGCCATTTTTGAGAGAATCAAA
GTTTGCCTCTTAAATAAGACTAAAATGAATACTCACACTAATCCCCAATCCTTTCAGGGTTAGGC
ACCACAAACATAGTCTTCTCG
Found at i:1272851 original size:634 final size:632
Alignment explanation
Indices: 1271920--1273331 Score: 1976
Period size: 634 Copynumber: 2.2 Consensus size: 632
1271910 AGTCTTCTCG
*
1271920 TTAGGATACATGATATTGAA-GCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTTTTGTA
1 TTAGGATACATGATATT-AATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTGTTGTA
* **
1271984 AAGTCTAAGTTCGTGCCTCAAATGAGACAAAGATGGATTCTAGTGTTGATCATCATTCTTTTTGT
65 AAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATC-TCATTCTTTTTGT
* * * * * * * ** * *
1272049 GATAAGGAAGTATAAATAGATTCTCCGCATTAGGATAATTGACATTGATGTTTTCTTTGGCATGG
129 GATATGGCACTATAAACACAATCTCCGCATTACGATAAAAGACATTGAAGTTTTCTTTGGCATGA
* *
1272114 AAATCTTTTCTTTGCCCAATTATTCCTAAAATGAAAGTTCATCCCTTGATTAAGAAAAGCATCGA
194 AAATCTTTTCTTTCCCCAATTATTCCTAAAATGAAAGTTCATCCCTTGAATAAGAAAAGCATCGA
*
1272179 TTCTCCTAACAGTCTCCTTTTTTTCCAAGATTGGGAAGCCAAAACACATTACCTCCGTTAGGAAA
259 TTCTCCAAACAGTCTCCTTTTTTTCCAAGATTGGGAAGCCAAAACACATTACCTCCGTTAGGAAA
* *
1272244 CACGACATTGATGCTTT--GGTGCTGC-AAGAAAAGCTTTTCTTCCTGTCGTTTTTGAGAGAATC
324 CACGACATTGATGCTTTAGGGT-C-ACAAAG-AAAGCTTTTCTTCCCGTCGTTTTTGAGAGAATC
*
1272306 AAAGTTTGCCTCTTAAATAAGACAAACATGAATACTCACACTAATCCCCAATCTTTTTAGGGTTA
386 AAAGTTTGCCTCTTAAATAAGACAAACATGAATACTCACACTAATCCCCAATCTTTTCAGGGTTA
* * * * * **
1272371 GGCACCAT-AACATAGTCTTCTCGTTAGGATACATGATATTGAATCTTTGGTTTTGCAACAAAGG
451 GGCACCATAAACATAGTCTTCTCATTAGGATACATCATACTGAAGCATTGGTCCTGCAACAAAGG
* * *
1272435 CTTCCCTCCCACCAGTTTTTGAAAAGTCTAAGTTTTCATGCCTCAAGTGCGACAAACATGGATTC
516 CTTCCCTCCAACCAGTTTTTGAAAAGTCTAAG--TTCATGACTCAAATGCGACAAACATGGATTC
* * *
1272500 T-CTAATAATTTTCATTCTTTTTTTGATTTGGCACTATAAACACTTTTTCCTCA
579 TACTAATAATTTTCATTCTTTTTGTGATTTGGCACAATAAACACATTTTCCTCA
* * * *
1272553 TTAGGATACATGATATTCATGCTTTGATTTGGCAACAAAGGCTTTCTTCCCACCAATTGTTATAA
1 TTAGGATACATGATATTAATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTGTTGTAA
* * *
1272618 AGTCTATGTTGGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTCGAATCTTTTTGTG
66 AGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTC-ATTCTTTTTGTG
* *
1272683 ATATGGCACTATAAACACAATCTCCTCATTACGATAAAAGACATTGAAGTTTTTCTTTTGCATGA
130 ATATGGCACTATAAACACAATCTCCGCATTACGATAAAAGACATTGAAG-TTTTCTTTGGCATGA
* * *
1272748 AAATCTTTTCTTTCCCCTATT-TTCCTTAAAATGAAAGTTCTTCCCTTGAATAAGACAAGCATCG
194 AAATCTTTTCTTTCCCCAATTATTCC-TAAAATGAAAGTTCATCCCTTGAATAAGAAAAGCATCG
* * *
1272812 ATTCTCCAAACAGTCTCCATTTTTTT-CAAGATTGGGAAGCCAAAACACATTGCCTTCTTTAGGA
258 ATTCTCCAAACAGTCTCC-TTTTTTTCCAAGATTGGGAAGCCAAAACACATTACCTCCGTTAGGA
** * * *
1272876 TGCATGACATTGATGCTTTAGGGTCACAAAGAAAGCTTTTCTTCCCGTCGTTTTTGATAGAATCC
322 AACACGACATTGATGCTTTAGGGTCACAAAGAAAGCTTTTCTTCCCGTCGTTTTTGAGAGAATCA
** * * *
1272941 AAGTTTTTCTCTTAAATAAGACTAACATGAATACTCACACTAATCCCCATTCTTTTCCGGGTTAG
387 AAGTTTGCCTCTTAAATAAGACAAACATGAATACTCACACTAATCCCCAATCTTTTCAGGGTTAG
* *
1273006 GTACCATAAATATAGTCTTCTCATTAGGATACATCATACTGAAGCATTGGTCCTGCAACAAAGGC
452 GCACCATAAACATAGTCTTCTCATTAGGATACATCATACTGAAGCATTGGTCCTGCAACAAAGGC
* * *
1273071 TTTCTTCCAACCAGTTTTTGTAAAGTCTAAGTTCATGACTCAAATGCGACAAACATGGATTCTAC
517 TTCCCTCCAACCAGTTTTTGAAAAGTCTAAGTTCATGACTCAAATGCGACAAACATGGATTCTAC
* * *
1273136 TGATGATTTTTATTCTTTTTGTGATTTGGCACAATAAACACATTTTCCTCA
582 TAATAATTTTCATTCTTTTTGTGATTTGGCACAATAAACACATTTTCCTCA
* * *
1273187 TTAGGATACATGATATTAATGCTTTGGCTTCACAACAAAGGCTTTCTTCCAACCAATTGTTGTAA
1 TTAGGATACATGATATTAATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTGTTGTAA
* * * **
1273252 AGTCTAAGTTCGTGCCTCAAATGAGATAAATATGGATTCTACTAATGATTTTCATTCTTTACGTG
66 AGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGA-TCTCATTCTTTTTGTG
*
1273317 ATTTGGCACTATAAA
130 ATATGGCACTATAAA
1273332 GGCTTTTTTC
Statistics
Matches: 685, Mismatches: 83, Indels: 21
0.87 0.11 0.03
Matches are distributed among these distances:
632 3 0.00
633 186 0.27
634 403 0.59
635 90 0.13
636 3 0.00
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.35
Consensus pattern (632 bp):
TTAGGATACATGATATTAATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTGTTGTAA
AGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTCATTCTTTTTGTGA
TATGGCACTATAAACACAATCTCCGCATTACGATAAAAGACATTGAAGTTTTCTTTGGCATGAAA
ATCTTTTCTTTCCCCAATTATTCCTAAAATGAAAGTTCATCCCTTGAATAAGAAAAGCATCGATT
CTCCAAACAGTCTCCTTTTTTTCCAAGATTGGGAAGCCAAAACACATTACCTCCGTTAGGAAACA
CGACATTGATGCTTTAGGGTCACAAAGAAAGCTTTTCTTCCCGTCGTTTTTGAGAGAATCAAAGT
TTGCCTCTTAAATAAGACAAACATGAATACTCACACTAATCCCCAATCTTTTCAGGGTTAGGCAC
CATAAACATAGTCTTCTCATTAGGATACATCATACTGAAGCATTGGTCCTGCAACAAAGGCTTCC
CTCCAACCAGTTTTTGAAAAGTCTAAGTTCATGACTCAAATGCGACAAACATGGATTCTACTAAT
AATTTTCATTCTTTTTGTGATTTGGCACAATAAACACATTTTCCTCA
Found at i:1274064 original size:158 final size:158
Alignment explanation
Indices: 1273902--1290686 Score: 4849
Period size: 158 Copynumber: 106.2 Consensus size: 158
1273892 TTCAGGGTTA
* *
1273902 GGCACCATAAACATAGTCTTCTCGTTAGGATACATGATATTGAAGCTTTGGTTTCGCAACAAAGG
1 GGCACCATAAACACAGTCTTCTCATTAGGATACATGATATTGAAGCTTTGGTTTCGCAACAAAGG
* * *
1273967 CTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGCGATAAACATGGATTCTA
66 CTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCTTGCCTCAAATGAGACAAACATGGATTCTA
* *
1274032 CTAATGATTTTCATTCTTTCTGTGATTT
131 CTAATGATCTTCATTCTTTTTGTGATTT
* * * * *
1274060 GGCACTATAAACACA-TTTTCCTCATTAGGATATATGATATT-AATGCTTTGCTTTCGCAATAAA
1 GGCACCATAAACACAGTCTT-CTCATTAGGATACATGATATTGAA-GCTTTGGTTTCGCAACAAA
* * * * *
1274123 GGCTTTCTTCCCACCGATTGTTGTAAAGTCTTAAGTTCGCT-CCTCAAATGAGAGAAATATGGAT
64 GGCTTTCTTCCCACCAATTTTTGTAAAGTC-TAAGTTC-TTGCCTCAAATGAGACAAACATGGAT
* *
1274187 TCTAGTAATGATCTTCATTCTTTTTGTGATAT
127 TCTACTAATGATCTTCATTCTTTTTGTGATTT
* * * * * * * ** * **
1274219 GGCACTATGAACACATTCTCCGCATTAGGATA-ATTGACATTGATA-TTTTTCTTTTGCATGAAA
1 GGCACCATAAACACAGTCTTCTCATTAGGATACA-TGATATTGA-AGCTTTGGTTTCGCAACAAA
** ** * * * * * ** * * *
1274282 ACCTTTTCTTTGC-CCAATTATCCT-TAAAATCAAAATTCTTCCCTTGAATAAGACAAGCATCGA
64 GGC-TTTCTTCCCACCAATT-T-TTGTAAAGTCTAAGTTCTTGCCTCAAATGAGACAAACATGGA
* * * ** *
1274345 TTCTCCTAA-CAGTCTCCATT-TTTTTCAAGATTG
126 TTCTACTAATGA-TCTTCATTCTTTTT-GTGATTT
* * * * * * ** * *
1274378 GGAAGCCA-AAACACATTGCATTCT--TTAGGATGCACGACATTGATGCTTTGGGGTCACAAGGA
1 GGCA-CCATAAACACAGT-C-TTCTCATTAGGATACATGATATTGAAGCTTTGGTTTCGCAA-CA
* ** * * * * * * ** *
1274440 AA-GCTTTTCTTTCTGCC-GTTTTTGATAGAA-TCCAAATT-TTTCTGTTAAACAAGACTAACAT
62 AAGGC-TTTCTTCCCACCAATTTTTG-TA-AAGTCTAAGTTCTTGC-CTCAAATGAGACAAACAT
* * * * * ** * * * *
1274501 GAATACT-CGCACTAATCCCCATTC-CTTTGAGGGTTA
123 GGATTCTAC-TAATGATCTTCATTCTTTTTG-TGATTT
* * * * * *
1274537 GGCACCACAAACATAGTCTTCTCGTTTGGATACATGATATTGAAGCTTTGGTTTCGTAACAAAAG
1 GGCACCATAAACACAGTCTTCTCATTAGGATACATGATATTGAAGCTTTGGTTTCGCAACAAAGG
* *
1274602 CTTTCTTCCCACCAATTTTTGTAAAGCCTAAGTTCATGCCTCAAATGCA-ACAAACATGGATTCT
66 CTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCTTGCCTCAAATG-AGACAAACATGGATTCT
*
1274666 ACTAATGATTTTCATTCTTTTTGTGATTT
130 ACTAATGATCTTCATTCTTTTTGTGATTT
** * * * *
1274695 GGCAGTATAAACACA-TTTTCCTCATTAGGATATATGATATT-AATGATTTGGTTTCACAACAAA
1 GGCACCATAAACACAGTCTT-CTCATTAGGATACATGATATTGAA-GCTTTGGTTTCGCAACAAA
* * * * * *
1274758 GGCTTTCTTGCCACCAATTGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAAACAAATATGTATTC
64 GGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCTTGCCTCAAATGAGACAAACATGGATTC
* *
1274823 TAGTAATGATCTTCATT-TTTTTCGTGATAT
129 TACTAATGATCTTCATTCTTTTT-GTGATTT
* * * * * * ** * **
1274853 GGCACTATAAACACATTC-TCTGCATTAGGATTA-TTGACATTGATGTTTTTCTTTTGCATGAAA
1 GGCACCATAAACACAGTCTTCT-CATTAGGA-TACATGATATTGAAGCTTTGGTTTCGCAACAAA
** ** ** ** * * * ** * * *
1274916 ACCTTTTCTTTGCCCAGTAA-TCCT-TAAACACAAACTTCTTCCCTTGAATAAGACAAGCATCGA
64 GGC-TTTC-TT-CCCACCAATTTTTGTAAAGTCTAAGTTCTTGCCTCAAATGAGACAAACATGGA
* ** * ** *
1274979 TTCTCCTAACAATCTCCATT-TTTTTCAAGATTG
126 TTCTACTAATGATCTTCATTCTTTTT-GTGATTT
* * * * * * * * * *
1275012 GGAAGCCA-AAACATATTGCCTTCT--TTAGGATGCACGACATTGATGCTTT-GTGGTCACAAGG
1 GGCA-CCATAAACACA--GTCTTCTCATTAGGATACATGATATTGAAGCTTTGGT-TTCGCAA-C
* ** * * * *
1275073 AAA-GCTTTTCTTTCTGCC-ATTTTTGATAGAA-TCCAAGTT-TTTCTCTTAAATAAGACTAAA-
61 AAAGGC-TTTCTTCCCACCAATTTTTG-TA-AAGTCTAAGTTCTTGC-CTCAAATGAGAC-AAAC
* * * ** ** * *
1275133 ATGAATACTCAC-ACT-AGTCCCCATTCCTTTCAG-GGTTA
121 ATGGATTCT-ACTAATGA-TCTTCATT-CTTTTTGTGATTT
* *
1275171 GGCACCACAAACATAGTCTTCTCATTAGGATACATGATATTGAAGCTTTGGTTTCGCAACAAAGG
1 GGCACCATAAACACAGTCTTCTCATTAGGATACATGATATTGAAGCTTTGGTTTCGCAACAAAGG
* * *
1275236 CTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTACCTCAAATGAGACAAATATGGATTCTA
66 CTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCTTGCCTCAAATGAGACAAACATGGATTCTA
* *
1275301 GTAATGATCTTCATTCTTTTTGTGATAT
131 CTAATGATCTTCATTCTTTTTGTGATTT
* * * * * *
1275329 GGCACTATAAACACATTCTCCGCATTAGGATA-ATTGACATTGATA--ATTGCG--T-G--A-AA
1 GGCACCATAAACACAGTCTTCTCATTAGGATACA-TGATATTGA-AGCTTTG-GTTTCGCAACAA
* ** * * ** ** * * * *
1275385 A-CCTTTTCTTTGC-CCAATTATCTT-TAAAATCAAAGTTCTCCCCTTGATTAAGACAAGCATCG
63 AGGC-TTTCTTCCCACCAATT-T-TTGTAAAGTCTAAGTTCTTGCCTCAAATGAGACAAACATGG
** * * * ** *
1275447 ATTCTGTTAA-CAGTCTCCATTTTTTTTCAAGATTG
125 ATTCTACTAATGA-TCTTCATTCTTTTT-GTGATTT
* * * * * ** * *
1275482 GGAAGCCA-AAACACAATGCCTTCT--TTAGGATGCATGACATTGATGCTTTGGGGTCACAAGGA
1 GGCA-CCATAAACAC-A-GTCTTCTCATTAGGATACATGATATTGAAGCTTTGGTTTCGCAA-CA
*** * * * * *
1275544 AA-GCTTTTCTT-CTTGCAGTTTTTGATAGAA-TGC-AAGTT-TTTCTCTTAAATAAGACTAACA
62 AAGGC-TTTCTTCCCACCAATTTTTG-TA-AAGT-CTAAGTTCTTGC-CTCAAATGAGACAAACA
* * * ** * * *
1275604 TGAATACTCAC-ACT-AGTCCCCATTCTTTTAAG-GGTTA
122 TGGATTCT-ACTAATGA-TCTTCATTCTTTT-TGTGATTT
* * * * * * * * * *
1275641 GGTACCATAAATATAGTTTTCTTATTAGCATACAGGATACTGAAGCATTGGTTTTGCAACAAAGG
1 GGCACCATAAACACAGTCTTCTCATTAGGATACATGATATTGAAGCTTTGGTTTCGCAACAAAGG
* * * *
1275706 CTTTCTTCCCACCAGTTTTTAT-AAGTCTAAGTTCATGCCTCAAATGCGACAAACATGGATTCTA
66 CTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCTTGCCTCAAATGAGACAAACATGGATTCTA
* *
1275770 CTAATGATTTTCGTTCTTTTTGTGATTT
131 CTAATGATCTTCATTCTTTTTGTGATTT
* * * * *
1275798 GGCACAATAAACACATTTTTGTCATTAGGATACATGACATT-AATGCTTTGGTTTCGCAACAAAG
1 GGCACCATAAACACAGTCTTCTCATTAGGATACATGATATTGAA-GCTTTGGTTTCGCAACAAAG
* * * * * *
1275862 GCTTTCTTCCAACCAATTGTTGTAAAGTCTAAGTT-TGTACCTCCAATGAGACAAATATGGATTT
65 GCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCT-TGCCTCAAATGAGACAAACATGGATTC
* *
1275926 TAGTAATGATCTTCATT-TTTTTGTGATAT
129 TACTAATGATCTTCATTCTTTTTGTGATTT
* * * * * * * * ** * *** *
1275955 GGCACTATAAACACATTCTCCGCATTAGGATTA-TTGACATTGATGTTTTTCTTTTGCGTGAAAA
1 GGCACCATAAACACAGTCTTCTCATTAGGA-TACATGATATTGAAGCTTTGGTTTCGCAACAAAG
* ** * * * ** * * *
1276019 CCTTTTCTTTGC-CCAATTATCTT-TAAAATCAAAGTT-TTCCCTTGAATAAGACAAGCATCGAT
65 GC-TTTCTTCCCACCAATT-T-TTGTAAAGTCTAAGTTCTTGCCTCAAATGAGACAAACATGGAT
* * *** *
1276081 TCTCCTAA-CAGTC-TCAATT-TTTTCCAAGATTG
127 TCTACTAATGA-TCTTC-ATTCTTTT-TGTGATTT
* * * * * * * **
1276113 GGAAGCCA-AAACACATTGCCT-TCATTAGGATACACGACATTGATGCTTTGGTGTCGCAGGAAA
1 GGCA-CCATAAACACAGT-CTTCTCATTAGGATACATGATATTGAAGCTTTGGTTTCGCAACAAA
* * * * * ** * * * *
1276176 AGCTTTTTTTCTAGCTGTTTTTGATAGAA-TCAAAAGTTGTCT-CC-CAAATAAGA-AAGACGTG
64 GGCTTTCTTCCCACCAATTTTTG-TA-AAGTC-TAAGTTCT-TGCCTCAAATGAGACAA-ACATG
* * * * ** * * *
1276237 AATACTCAC-ACTAATCCCCATTCTTTTCAG-GGTTA
124 GATTCT-ACTAATGATCTTCATTCTTTT-TGTGATTT
* * *
1276272 GGCACCATAAACATAGGCTTCTCGTTAGGATACATGATATTGAAGCTTTGGTTTCGCAACAAAGG
1 GGCACCATAAACACAGTCTTCTCATTAGGATACATGATATTGAAGCTTTGGTTTCGCAACAAAGG
* * * *
1276337 CTTTCTTCCTACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGCGATAAACATGGATTCTA
66 CTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCTTGCCTCAAATGAGACAAACATGGATTCTA
* *
1276402 CTAATGATTTTCATTCTTTCTGTGATTT
131 CTAATGATCTTCATTCTTTTTGTGATTT
* * * * * * * *
1276430 GGCACTATAAACACA-TTTTCCTCACTAAGATATATGATATT-AATGTTTTGCTTTCGCAATAAA
1 GGCACCATAAACACAGTCTT-CTCATTAGGATACATGATATTGAA-GCTTTGGTTTCGCAACAAA
* * * * *** *
1276493 GGCTTTCTTCCCACCGATTGTTGCAAAGTCTTAACTTCGCACCTCAAATGAGACAAATATGGATT
64 GGCTTTCTTCCCACCAATTTTTGTAAAGTC-TAAGTTCTTGCCTCAAATGAGACAAACATGGATT
* * *
1276558 GTAGTAATGATCTTCATTCTTTTTGTGATAT
128 CTACTAATGATCTTCATTCTTTTTGTGATTT
* * * * * * * ** *
1276589 GGCACTATGAACACATTCTCCGCATTAGGATA-ATTGACATTGATA-TTTTTCTTTTGCATGA-A
1 GGCACCATAAACACAGTCTTCTCATTAGGATACA-TGATATTGA-AGCTTTGGTTTCGCA--ACA
*** ** * * * * ** * * *
1276651 AACTTTTTCTTTGC-CCAATTATCCT-TAAAATCAAAGTTCTTCCCTTGAATAAGACAAGCATCG
62 AAGGCTTTCTTCCCACCAATT-T-TTGTAAAGTCTAAGTTCTTGCCTCAAATGAGACAAACATGG
* * * ** *
1276714 ATTCTCCTAA-CAGTCTCCATT-TTTTTCAAGATTG
125 ATTCTACTAATGA-TCTTCATTCTTTTT-GTGATTT
* * * * * * ** * *
1276748 GGAAGCCA-AAACACATTGCCTTCT--TTAGGATGCACGACATTGATGCTTTGGGGTCACAAGGA
1 GGCA-CCATAAACACA--GTCTTCTCATTAGGATACATGATATTGAAGCTTTGGTTTCGCAA-CA
* ** * * * * * * ** *
1276810 AA-GCTTTTCTTTCTGCC-GTTTTTGATAGAA-TCCAAATT-TTTCTGTTAAACAAGACTAACAT
62 AAGGC-TTTCTTCCCACCAATTTTTG-TA-AAGTCTAAGTTCTTGC-CTCAAATGAGACAAACAT
* * * * * ** ** * *
1276871 GAATACT-CGCACTAATCCCCATTCCTTTCAG-GGTTA
123 GGATTCTAC-TAATGATCTTCATT-CTTTTTGTGATTT
* * * *
1276907 GGCACCACAAACACAGTCTTCTCGTTTGGATACATGATATTGAAGCTTTGGTTTCGCAACAAAAG
1 GGCACCATAAACACAGTCTTCTCATTAGGATACATGATATTGAAGCTTTGGTTTCGCAACAAAGG
* * * *
1276972 CTTTCTTCCCACCAATTTTTGTAAAGCCTAAGTTCATGCCTCAAATGCGACAAACAAGGATTCTA
66 CTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCTTGCCTCAAATGAGACAAACATGGATTCTA
1277037 CTAATGAT-TCTCATTCTTTTTGTGATTT
131 CTAATGATCT-TCATTCTTTTTGTGATTT
* * * * *
1277065 GGCACTATAAACACA-TTTTCCTCATTAGGATATATGATATT-AATGCTTTGATTTCACAACAAA
1 GGCACCATAAACACAGTCTT-CTCATTAGGATACATGATATTGAA-GCTTTGGTTTCGCAACAAA
* * * * * *
1277128 GGCTTTCTTTCCACCAATTGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAAACAAATATGTATTC
64 GGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCTTGCCTCAAATGAGACAAACATGGATTC
* *
1277193 TAGTAATGATCTTCATT-TTTTTCGTGATAT
129 TACTAATGATCTTCATTCTTTTT-GTGATTT
* * * * * * ** * **
1277223 GGCACTATAAACACATTC-TCTGCATTAGGATTA-TTGACATTGATGTTTTTCTTTTGCATGAAA
1 GGCACCATAAACACAGTCTTCT-CATTAGGA-TACATGATATTGAAGCTTTGGTTTCGCAACAAA
** ** * ** ** * * * ** * * *
1277286 ACCTTTTCTTTGC-CTAAGTATCCT-TAAAAACAAACTTCTTCCCTTGAATAAGACAAGCATCGA
64 GGC-TTTCTTCCCACCAA-T-TTTTGTAAAGTCTAAGTTCTTGCCTCAAATGAGACAAACATGGA
* ** * ** *
1277349 TTCTCCTAACAATCTCCATT-TTTTTCAAGATTG
126 TTCTACTAATGATCTTCATTCTTTTT-GTGATTT
* * * * * * * * * *
1277382 GGAAGCCA-AAACACATTGCTT-TCTTTAGGATGCACGACATTGATGCTTTTGG-GTCACAAGGA
1 GGCA-CCATAAACACAGT-CTTCTCATTAGGATACATGATATTGAAGC-TTTGGTTTCGCAA-CA
* ** * * * * * *
1277444 AA-GCTTTTCTTTCTGCCATTTTTTATAGAA-TCCAAGTT-TTTCTCTTAAATAAGACTAAA-AT
62 AAGGC-TTTCTTCCCACCAATTTTTGTA-AAGTCTAAGTTCTTGC-CTCAAATGAGAC-AAACAT
* * * ** ** * *
1277505 GAATACTCAC-ACT-AGTCCCCATTCCTTTCAG-GGTTA
123 GGATTCT-ACTAATGA-TCTTCATT-CTTTTTGTGATTT
* * *
1277541 GGCACCACAAACATAGTCTTCTCGTTAGGATACATGATATTGAAGCTTTGGTTTCGCAACAAAGG
1 GGCACCATAAACACAGTCTTCTCATTAGGATACATGATATTGAAGCTTTGGTTTCGCAACAAAGG
* *
1277606 CTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTA
66 CTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCTTGCCTCAAATGAGACAAACATGGATTCTA
* *
1277671 GTAATGATCTTCATTCTTTTTGTGATAT
131 CTAATGATCTTCATTCTTTTTGTGATTT
* * * * * * *
1277699 GGCA-TATGAACACATTCTCCGCATTAGGATA-ATTGACATTGATA--ATTGCG--T-G--A-AA
1 GGCACCATAAACACAGTCTTCTCATTAGGATACA-TGATATTGA-AGCTTTG-GTTTCGCAACAA
* ** * * * ** * * *
1277754 A-CCTTTTCTTTGC-CCAATTATCCT-TAAAAT-TAAAGTTCTTCCCTTGAATAAGACAAGCATC
63 AGGC-TTTCTTCCCACCAATT-T-TTGTAAAGTCT-AAGTTCTTGCCTCAAATGAGACAAACATG
* * * * * ** *
1277815 GATTCTCCGAA-CAGTCTCCATTTTTTTTCAAGATTG
124 GATTCTACTAATGA-TCTTCATTCTTTTT-GTGATTT
* * * * * ** * *
1277851 GGAAGCCA-AAACACAATGCCTTCT--TTAGGATGCATGACATTGATGCTTTGGGGTCACAAGGA
1 GGCA-CCATAAACAC-A-GTCTTCTCATTAGGATACATGATATTGAAGCTTTGGTTTCGCAA-CA
* * * * * *
1277913 AA-GCTTTTCTTCCTA-CAGTTTTTGATAGAA-TGC-AAGTT-TTTCTCTTAAATAAGACTAACA
62 AAGGC-TTTCTTCCCACCAATTTTTG-TA-AAGT-CTAAGTTCTTGC-CTCAAATGAGACAAACA
* * * ** * * *
1277973 TGAATACTCAC-ACT-AGTCCCCATTCTTTTAAG-GGTTA
122 TGGATTCT-ACTAATGA-TCTTCATTCTTTT-TGTGATTT
* * * * * * * * * * *
1278010 GGTACCATAAATATAGTTTTCTTATTAGGATACAGGATACTAAAGCATTGGTTTTGCAACATAGG
1 GGCACCATAAACACAGTCTTCTCATTAGGATACATGATATTGAAGCTTTGGTTTCGCAACAAAGG
* * * *
1278075 CTTTCTTCCCACCAGTTTTTAT-AAGTCTAAGTTCATGCCTCAAATGCGACAAACATGGATTCTA
66 CTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCTTGCCTCAAATGAGACAAACATGGATTCTA
* * *
1278139 CTGATGATTTTCGTTCTTTTTGTGATTT
131 CTAATGATCTTCATTCTTTTTGTGATTT
* * * * * *
1278167 GGCACAATAAATACAATTTTTTCATTAGGATACATGATATT-AATGCTTTGGTTTCGCAATAAAG
1 GGCACCATAAACACAGTCTTCTCATTAGGATACATGATATTGAA-GCTTTGGTTTCGCAACAAAG
* * * * * * *
1278231 GCTTTCTTCCAACCAATTGTTGTAAAGTCTAAGTTCGTACCTCCAATGAGACAAATATGGATTTT
65 GCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCTTGCCTCAAATGAGACAAACATGGATTCT
* *
1278296 AGTAATGATCTTCATT-TTTTTGTGATAT
130 ACTAATGATCTTCATTCTTTTTGTGATTT
* * * * * * * * ** * *** *
1278324 GGCACTATAAACACATTCTCCGCATTAGGATTA-TTGACATTGATGTTTTTCTTTTGCGTGAAAA
1 GGCACCATAAACACAGTCTTCTCATTAGGA-TACATGATATTGAAGCTTTGGTTTCGCAACAAAG
* ** * * * ** * * *
1278388 CCTTTTCTTTGC-CCAATTATCTT-TAAAATCAAAGTT-TTCCCTTGAATAAGACAAGCATCGAT
65 GC-TTTCTTCCCACCAATT-T-TTGTAAAGTCTAAGTTCTTGCCTCAAATGAGACAAACATGGAT
* * ** *** *
1278450 TCTCCTAA-CAGTCACCATT-TTTTCCAAGATTG
127 TCTACTAATGA-TCTTCATTCTTTT-TGTGATTT
* * * * * * **
1278482 GGAAGCCA-AAACACATTGCCT-TCATTAGGATACACGACATTGATGCTTTGGTGTT-GCAGGAA
1 GGCA-CCATAAACACAGT-CTTCTCATTAGGATACATGATATTGAAGCTTTGGT-TTCGCAACAA
* * * * * * * * *
1278544 AAGCTTTTTTTCTAGCC-GTTTTTGATAGAA-TCAAAAGTTGTCT-CCT-AAATAAGA-AAGACG
63 AGGCTTTCTTCCCA-CCAATTTTTG-TA-AAGTC-TAAGTTCT-TGCCTCAAATGAGACAA-ACA
* * * * ** * * *
1278604 TGAATACTCAC-ACTAATCCCCATTCTTTTCAG-GGTTA
122 TGGATTCT-ACTAATGATCTTCATTCTTTT-TGTGATTT
* * *
1278641 GGCACCATAAACATAGTCTTCTCGTTAGGATACATGATATTGAAGCTTTGGTTTCACAACAAAGG
1 GGCACCATAAACACAGTCTTCTCATTAGGATACATGATATTGAAGCTTTGGTTTCGCAACAAAGG
* * *
1278706 CTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGCGATAAACATGGATTCTA
66 CTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCTTGCCTCAAATGAGACAAACATGGATTCTA
* *
1278771 CTAATGATTTTCATTCTTTCTGTGATTT
131 CTAATGATCTTCATTCTTTTTGTGATTT
* * * * * * *
1278799 GGCACTATAAACACA-TTTTCCTCACTAAGATATATGATATT-AATGCTTTGCTTTCGCAATAAA
1 GGCACCATAAACACAGTCTT-CTCATTAGGATACATGATATTGAA-GCTTTGGTTTCGCAACAAA
* * * * *** *
1278862 GGCTTTCTTCCCACCGATTGTTGCAAAGTCTTAACTTCGCACCTCAAATGAGACAAATATGGATT
64 GGCTTTCTTCCCACCAATTTTTGTAAAGTC-TAAGTTCTTGCCTCAAATGAGACAAACATGGATT
* * *
1278927 GTAGTAATGATCTTCATTCTTTTTGTGATAT
128 CTACTAATGATCTTCATTCTTTTTGTGATTT
* * * * * * * ** * **
1278958 GGCACTATGAACACATTCTCCGCATTAGGATA-ATTGACATTGATA-TTTTTCTTTTGCATGAAA
1 GGCACCATAAACACAGTCTTCTCATTAGGATACA-TGATATTGA-AGCTTTGGTTTCGCAACAAA
** ** * * * * ** * * * *
1279021 ACCTTTTCTTTGC-CCAATTATCCT-TAAAATCAAAGTTCTTCCCTTGAATAAGATAAGCATCGA
64 GGC-TTTCTTCCCACCAATT-T-TTGTAAAGTCTAAGTTCTTGCCTCAAATGAGACAAACATGGA
* * * ** *
1279084 TTCTCCTAA-CAGTCTCCATT-TTTTTCAAGATTG
126 TTCTACTAATGA-TCTTCATTCTTTTT-GTGATTT
* * * * * * * * ** * *
1279117 GGAAGCCA-AACCAGATTGCCTTCT--TTAGGATGCACGACATTGATGCTTTGGGGTCACAAGGA
1 GGCA-CCATAAACACA--GTCTTCTCATTAGGATACATGATATTGAAGCTTTGGTTTCGCAA-CA
* * * * * * * ** *
1279179 AA-GCTTTTCTTTCTACC-GTTTTTGATAGAA-TCCAAGTT-TTTCTGTTAAACAAGACTAACAT
62 AAGGC-TTTCTTCCCACCAATTTTTG-TA-AAGTCTAAGTTCTTGC-CTCAAATGAGACAAACAT
* * * * * ** ** * *
1279240 GAATACT-CGCACTAATCCCCATTCCTTTCAG-GGTTA
123 GGATTCTAC-TAATGATCTTCATT-CTTTTTGTGATTT
* * * * *
1279276 GGCACCACAAACACAGTCTTCTCGTTTGGATACATGATATTGAAGCTTTGGTTTTGCAACAAAAG
1 GGCACCATAAACACAGTCTTCTCATTAGGATACATGATATTGAAGCTTTGGTTTCGCAACAAAGG
* * * *
1279341 CTTTCTTCCCACCAATTTTTGTAAAGCCTAAGTTCATGCCTCAAATGCGACAAACAAGGATTCTA
66 CTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCTTGCCTCAAATGAGACAAACATGGATTCTA
1279406 CTAATGAT-TCTCATTCTTTTTGTGATTT
131 CTAATGATCT-TCATTCTTTTTGTGATTT
* * * * *
1279434 GGCACTATAAACACA-TTTTCCTCATTAGGATATATGATATT-AATGCTTTGATTTCACAACAAA
1 GGCACCATAAACACAGTCTT-CTCATTAGGATACATGATATTGAA-GCTTTGGTTTCGCAACAAA
* * * * * *
1279497 GGCTTTCTTCCCACCAATTGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAAACAAATACGTATTC
64 GGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCTTGCCTCAAATGAGACAAACATGGATTC
* *
1279562 TAGTAATGATCTTCATT-TTTTTCGTGATAT
129 TACTAATGATCTTCATTCTTTTT-GTGATTT
* * * * * * ** * **
1279592 GGCACTATAAACACATTC-TCTACATTAGGATTA-TTGACATTGATGTTTTTCTTTTGCATGAAA
1 GGCACCATAAACACAGTCTTCT-CATTAGGA-TACATGATATTGAAGCTTTGGTTTCGCAACAAA
** ** * ** ** * * * ** * * *
1279655 ACCTTTTCTTTGC-CTAAGTATCCT-TAAAAACAAACTTCTTCCCTTGAATAAGACAAGCATCGA
64 GGC-TTTCTTCCCACCAA-T-TTTTGTAAAGTCTAAGTTCTTGCCTCAAATGAGACAAACATGGA
* ** * ** *
1279718 TTCTCCTAACAATCTCCATT-TTTTTCAAGATTG
126 TTCTACTAATGATCTTCATTCTTTTT-GTGATTT
* * * * * * * ** * *
1279751 GGAAGCCA-AAACACATTGCTT-TCTTTAGGATGCACGACATTGATGCTTTGGGGTCACAAGGAA
1 GGCA-CCATAAACACAGT-CTTCTCATTAGGATACATGATATTGAAGCTTTGGTTTCGCAA-CAA
* ** * * * * * *
1279814 A-GCTGTTCTTTCTGCCATTTTTTATAGAA-TCCAAGTT-TTTCTCTTAAATAAGACTAAA-ATG
63 AGGCT-TTCTTCCCACCAATTTTTGTA-AAGTCTAAGTTCTTGC-CTCAAATGAGAC-AAACATG
* * * ** ** * *
1279875 AATACTCAC-ACT-AGTCCCCATTCCTTTCAG-GGTTA
124 GATTCT-ACTAATGA-TCTTCATT-CTTTTTGTGATTT
* * *
1279910 GGCACCACAAACATAGTCTTCTCGTTAGGATACATGATATTGAAGCTTTGGTTTCGCAACAAAGG
1 GGCACCATAAACACAGTCTTCTCATTAGGATACATGATATTGAAGCTTTGGTTTCGCAACAAAGG
* *
1279975 CTTTCTTCCCACCAA-TTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTA
66 CTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCTTGCCTCAAATGAGACAAACATGGATTCTA
* *
1280039 GTAATGATCTTCATTCTTTTTGTGATAT
131 CTAATGATCTTCATTCTTTTTGTGATTT
* * * * * * * ** * **
1280067 GGCACTATGAACACATTCTCCGCATTAGGATA-ATTGACATTGATA-TTTTTCTTTTGCATGAAA
1 GGCACCATAAACACAGTCTTCTCATTAGGATACA-TGATATTGA-AGCTTTGGTTTCGCAACAAA
** ** * * * * ** * * * *
1280130 ACCTTTTCTTTGC-CCAATTATCCT-TAAAATCAAAGTTCTTCCCTTGAATAAGATAAGCATCGA
64 GGC-TTTCTTCCCACCAATT-T-TTGTAAAGTCTAAGTTCTTGCCTCAAATGAGACAAACATGGA
* * * ** *
1280193 TTCTCCTAA-CAGTCTCCATT-TTTTTCAAGATTG
126 TTCTACTAATGA-TCTTCATTCTTTTT-GTGATTT
* * * * * * * ** * *
1280226 GGAAGCCA-AAACAGATTGCCTTCT--TTAGGATGCACGACATTGATGCTTTGGGGTCACAAGGA
1 GGCA-CCATAAACACA--GTCTTCTCATTAGGATACATGATATTGAAGCTTTGGTTTCGCAA-CA
* * * * * * * ** *
1280288 AA-GCTTTTCTTTCTACC-GTTTTTGATAGAA-TCCAAGTT-TTTCTGTTAAACAAGACTAACAT
62 AAGGC-TTTCTTCCCACCAATTTTTG-TA-AAGTCTAAGTTCTTGC-CTCAAATGAGACAAACAT
* * * * * ** ** * *
1280349 GAATACT-CGCACTAATCCCCATTCCTTTCAG-GGTTA
123 GGATTCTAC-TAATGATCTTCATT-CTTTTTGTGATTT
* * * * *
1280385 GGCACCACAAACACAGTCTTCTCGTTTGGATACATGATATTGAAGCTTTGGTTTTGCAACAAAAG
1 GGCACCATAAACACAGTCTTCTCATTAGGATACATGATATTGAAGCTTTGGTTTCGCAACAAAGG
* * * *
1280450 CTTTCTTCCCACCAATTTTTGTAAAGCCTAAGTTCATGCCTCAAATGCGACAAACAAGGATTCTA
66 CTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCTTGCCTCAAATGAGACAAACATGGATTCTA
1280515 CTAATGAT-TCTCATTCTTTTTGTGATTT
131 CTAATGATCT-TCATTCTTTTTGTGATTT
* * * * *
1280543 GGCACTATAAACACA-TTTTCCTCATTAGGATATATGATATT-AATGC-TTGATTTCACAACAAA
1 GGCACCATAAACACAGTCTT-CTCATTAGGATACATGATATTGAA-GCTTTGGTTTCGCAACAAA
* * * * * *
1280605 GGCTTTCTTCCCACCAATTGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAAACAAATACGTATTC
64 GGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCTTGCCTCAAATGAGACAAACATGGATTC
* *
1280670 TAGTAATGATCTTCATT-TTTTTCGTGATAT
129 TACTAATGATCTTCATTCTTTTT-GTGATTT
* * * * * * ** * **
1280700 GGCACTATAAACACATTC-TCTACATTAGGATTA-TTGACATTGATGTTTTTCTTTTGCATGAAA
1 GGCACCATAAACACAGTCTTCT-CATTAGGA-TACATGATATTGAAGCTTTGGTTTCGCAACAAA
** ** * ** ** * * * ** * * *
1280763 ACCTTTTCTTTGC-CTAAGTATCCT-TAAAAACAAACTTCTTCCCTTGAATAAGACAAGCATCGA
64 GGC-TTTCTTCCCACCAA-T-TTTTGTAAAGTCTAAGTTCTTGCCTCAAATGAGACAAACATGGA
* ** * ** *
1280826 TTCTCCTAACAATCTCCATT-TTTTTCAAGATTG
126 TTCTACTAATGATCTTCATTCTTTTT-GTGATTT
* * * * * * * ** * *
1280859 GGAAGCCA-AAACACATTGCTT-TCTTTAGGATGCACGACATTGATGCTTTGGGGTCACAAGGAA
1 GGCA-CCATAAACACAGT-CTTCTCATTAGGATACATGATATTGAAGCTTTGGTTTCGCAA-CAA
* ** * * * * * *
1280922 A-GCTGTTCTTTCTGCCATTTTTTATAGAA-TCCAAGTT-TTTCTCTTAAATAAGACTAAA-ATG
63 AGGCT-TTCTTCCCACCAATTTTTGTA-AAGTCTAAGTTCTTGC-CTCAAATGAGAC-AAACATG
* * * ** ** * *
1280983 AATACTCAC-ACT-AGTCCCCATTCCTTTCAG-GGTTA
124 GATTCT-ACTAATGA-TCTTCATT-CTTTTTGTGATTT
* * *
1281018 GGCACCACAAACATAGTCTTCTCGTTAGGATACATGATATTGAAGCTTTGGTTTCGCAACAAAGG
1 GGCACCATAAACACAGTCTTCTCATTAGGATACATGATATTGAAGCTTTGGTTTCGCAACAAAGG
* *
1281083 CTTTCTTCCCACCAA-TTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTA
66 CTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCTTGCCTCAAATGAGACAAACATGGATTCTA
* *
1281147 GTAATGATCTTCATTCTTTTTGTGATAT
131 CTAATGATCTTCATTCTTTTTGTGATTT
* * * * * * *
1281175 GGCACTATGAACACATTCTCCGCATTAGGATA-ATTGACATTGATA--ATTGCG--T-G--A-AA
1 GGCACCATAAACACAGTCTTCTCATTAGGATACA-TGATATTGA-AGCTTTG-GTTTCGCAACAA
* ** * * * ** * * *
1281231 A-CCTTTTCTTTGC-CCAATTATCCT-TAATA-TCAAAGTTCTTCCCTTGAATAAGACAAGCATC
63 AGGC-TTTCTTCCCACCAATT-T-TTGTAA-AGTCTAAGTTCTTGCCTCAAATGAGACAAACATG
* * * * *
1281292 GATTCTCCTAA-CAGTC-TC-TTTTTTTTTTCAAGATTG
124 GATTCTACTAATGA-TCTTCATTCTTTTTGT---GATTT
* * * * * ** * ** * *
1281328 GGAAGCC-GAAGCACATTGCCTTCT--TTAGGATGCATGGCATTGATGCTTTGGGGTCACAAGGA
1 GGCA-CCATAAACACA--GTCTTCTCATTAGGATACATGATATTGAAGCTTTGGTTTCGCAA-CA
** * * * * * *
1281390 AA-GCTTTTCTTCCTGCC-ATTTTTGATAGAA-TCCAAGTT-TTTCTCTTAAATAAGACTATCAT
62 AAGGC-TTTCTTCCCACCAATTTTTG-TA-AAGTCTAAGTTCTTGC-CTCAAATGAGACAAACAT
* * * * * * *
1281451 GAATACTCAC-ACT-AGTC-CCATTCTTTTCAGCG-TTA
123 GGATTCT-ACTAATGA-TCTTCATTCTTTT-TGTGATTT
** * * * * * *
1281486 GGTGCCATAAATATAGTCTTCTCATTAGGATACATCATACTGAAGCATTGGTTTTGCAACAAAGG
1 GGCACCATAAACACAGTCTTCTCATTAGGATACATGATATTGAAGCTTTGGTTTCGCAACAAAGG
* *
1281551 CTTTCTTCCCACCAATTTTTAT-AAGTCTAAGTTCATGCCTCAAATGTA-ACAAACATGGATTCT
66 CTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCTTGCCTCAAATG-AGACAAACATGGATTCT
* * *
1281614 ACTGATGATTTTCATTCTTTCTGTGATTT
130 ACTAATGATCTTCATTCTTTTTGTGATTT
* * * * * * * *
1281643 GGCACAATAAACGCATTTTTGTCATTAGGATGCATGATATT-ATTGCTTTGGTTTCGCAACAAAA
1 GGCACCATAAACACAGTCTTCTCATTAGGATACATGATATTGA-AGCTTTGGTTTCGCAACAAAG
* * * * * * *
1281707 GCTTTCTTCCAACCAATTGTTGTAAAGTTTAAGTTCGTACCTCAAATGAGACAAATATGGATTTT
65 GCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCTTGCCTCAAATGAGACAAACATGGATTCT
* * *
1281772 AGTAATGATGTTCATT-TTTTTGTGATAT
130 ACTAATGATCTTCATTCTTTTTGTGATTT
* * * * * * * * ** **
1281800 GGCACTATAAACACATTCTACGCATTAGGATTA-TTGACATTGATGTTTTTCTTTTACGTGA-AA
1 GGCACCATAAACACAGTCTTCTCATTAGGA-TACATGATATTGAAG-CTTTGGTTT-CGCAACAA
* ** * * * ** * * *
1281863 A-CCTTTTCTTTGC-CCAATTATCTT-TAAAATCAAAGTTCTTCCCTTGAATAAGACAAGCATCG
63 AGGC-TTTCTTCCCACCAATT-T-TTGTAAAGTCTAAGTTCTTGCCTCAAATGAGACAAACATGG
* * * ** *
1281925 ATTCTGCTAA-CAGTCTCCATT-TTTTTCAAGATTG
125 ATTCTACTAATGA-TCTTCATTCTTTTT-GTGATTT
* * * * * * * *
1281959 GGAAGCCA-AAACACATTACCTTCT--TTAGGATGCATGACATTGATGCTTT-GTGGTCCCAAGA
1 GGCA-CCATAAACACAGT--CTTCTCATTAGGATACATGATATTGAAGCTTTGGT-TTCGCAACA
* * * * * ** *
1282020 AAAGCTTTTCTTCCCATC-ATTTTTG-ACAGAATCCAAG-T-TTGTCTCTTAAAAAAGACTAACA
62 AAGGC-TTTCTTCCCACCAATTTTTGTA-A-AGTCTAAGTTCTTG-C-CTCAAATGAGACAAACA
* ** * * * ** * * *
1282081 TGAACACTCAC-ACTAAGCCCCATTCTTTTCAG-GGTTA
122 TGGATTCT-ACTAATGATCTTCATTCTTTT-TGTGATTT
* * ** ** * *
1282118 GGTACCATAAATATTGTCTTCTCATTAGGACCCATGATACTGAAGCTTTGGTTTTGCAACAAAGG
1 GGCACCATAAACACAGTCTTCTCATTAGGATACATGATATTGAAGCTTTGGTTTCGCAACAAAGG
* * * * *
1282183 ATTTCTTCCCACCAGTTTTT-TTAAGTCTAAGTTCATGCCTCAAATGCGACAAACATGGATTCTA
66 CTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCTTGCCTCAAATGAGACAAACATGGATTCTA
* *
1282247 CTGATGATTTTCATTCTTTTTGTGATTT
131 CTAATGATCTTCATTCTTTTTGTGATTT
* * * * *
1282275 GGTACAATAAACA-AATTTTCATCATTAGGATACATGATATT-AATACTTTGGTTTCGCAACAAA
1 GGCACCATAAACACAGTCTTC-TCATTAGGATACATGATATTGAA-GCTTTGGTTTCGCAACAAA
* * * * * * *
1282338 GGCTTTCTTTCAACCAATTGTTGTAAAGTATTAGTT-TGTCCCTCAAATGAGACAAATATGGATT
64 GGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCT-TGCCTCAAATGAGACAAACATGGATT
* * *
1282402 CTACTAACGATTTTCATTCTTTTTATGATTT
128 CTACTAATGATCTTCATTCTTTTTGTGATTT
* * * *
1282433 GGCACTATAAACACA-TTTTC-CTATTTAGGATATATGATATT-AATGCTTTGGTTTTGCAACAA
1 GGCACCATAAACACAGTCTTCTC-A-TTAGGATACATGATATTGAA-GCTTTGGTTTCGCAACAA
* * * * *
1282495 AGGCTTTCTTCCCACCAATTGTTGTAAAGTTTAAGTTCGTGCCTCAAATGAGAAAAATATGGATT
63 AGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCTTGCCTCAAATGAGACAAACATGGATT
* * *
1282560 CTAGTAATGATTTTCATTCTTTTTGTGATAT
128 CTACTAATGATCTTCATTCTTTTTGTGATTT
* * * * ** ** * ** *
1282591 GGCACTATAAACACATTCTCCGCATTAGGATA-ATTGGCATTGAAGCTTTTTTTTGGCATGAAAA
1 GGCACCATAAACACAGTCTTCTCATTAGGATACA-TGATATTGAAGCTTTGGTTTCGCAACAAAG
* ** * * * * * * * *
1282655 CCTTTTCTTTGC-CCAATTATCCT-TAAAATCAAAGTTCTTCCCTTGAAA-AAGACAAGCATCGA
65 GC-TTTCTTCCCACCAATT-T-TTGTAAAGTCTAAGTTCTTGCC-TCAAATGAGACAAACATGGA
* **
1282717 TTCT-CTTAAT-AGTCTCCATT-TTTTTCAAGA-TT
126 TTCTAC-TAATGA-TCTTCATTCTTTTT-GTGATTT
* * * * * * *
1282749 GAGAAGCCA-AAACACATTGCCTTCT--TTAGGATGCACGACATTGATGCTTTAAGG--TCACAA
1 G-GCA-CCATAAACACA--GTCTTCTCATTAGGATACATGATATTGAAGCTTT--GGTTTCGCAA
* * * * * * * * *
1282809 GAAAAGCTTTTCTTCCCGCC-GTTTTTGATAGAA-TCTAGGTT-TTTCTCTTAAATAAGACTAAC
60 CAAAGGC-TTTCTTCCCACCAATTTTTG-TA-AAGTCTAAGTTCTTGC-CTCAAATGAGACAAAC
* * * ** ** *
1282871 A-GGAATACTCAC-ACTAATCCCCATTC-TTTTCAGAGTTA
121 ATGG-ATTCT-ACTAATGATCTTCATTCTTTTTGTGA-TTT
* * * *
1282909 GGCACCACAAACATAGTCTTGT--TT-GGATACATGATATTGAAGCTTTGGTTTCGCAACAAAAG
1 GGCACCATAAACACAGTCTTCTCATTAGGATACATGATATTGAAGCTTTGGTTTCGCAACAAAGG
* * *
1282971 CTTTCTTCCCACCAATTTTTGTAAAGCCTAAGTTCATGCCTCAAATGTGACAAACATGGATTCTA
66 CTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCTTGCCTCAAATGAGACAAACATGGATTCTA
*
1283036 CTAATGATTTTCATTCTTTTTGTGATTT
131 CTAATGATCTTCATTCTTTTTGTGATTT
** * * * *
1283064 GGCACTGTAAACACA-TTTTCCTCATTAGGATATATGATATT-AACGCTTTGGTTTCACAGCAAA
1 GGCACCATAAACACAGTCTT-CTCATTAGGATACATGATATTGAA-GCTTTGGTTTCGCAACAAA
* *
1283127 GGCTTTCTTCCCACCAATTGTTGTAAAGTCTAAGTT-TGTGCCTCAAATGAGACAAATATGGATT
64 GGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCT-TGCCTCAAATGAGACAAACATGGATT
* * *
1283191 CTAGTAATGATCGTCATT-TTTTTGTGATAT
128 CTACTAATGATCTTCATTCTTTTTGTGATTT
* * * * * * * * ** * ** *
1283221 GGCACTATAAACACATTCTCCGCATTAGGATTA-TTGACATTGATGTTTTTCTTTTGCATGAAAA
1 GGCACCATAAACACAGTCTTCTCATTAGGA-TACATGATATTGAAGCTTTGGTTTCGCAACAAAG
* ** * * * * ** * * *
1283285 CCTTTTCTTTGC-CCAATTATCCT-TAAAATCAAAGTTCTTCCCTTGAATAAGACAAGCATCGAT
65 GC-TTTCTTCCCACCAATT-T-TTGTAAAGTCTAAGTTCTTGCCTCAAATGAGACAAACATGGAT
* * * ** *
1283348 TCTCCTAA-CAGTCTCCATT-TTTTTCAAGATTG
127 TCTACTAATGA-TCTTCATTCTTTTT-GTGATTT
* * * * * * * *
1283380 GGAAGCCA-AAACACATTGCCTTCT--TTAGGATGCATGACATTGATGCTTT-GTGGTCCCAAGA
1 GGCA-CCATAAACACA--GTCTTCTCATTAGGATACATGATATTGAAGCTTTGGT-TTCGCAACA
* * * * * * ** *
1283441 AAAGCTTTTCTTCCCATC-GTTTTTG-ACAGAATCCAAG-T-TTGTCTCTTAAAAAAGACTAACA
62 AAGGC-TTTCTTCCCACCAATTTTTGTA-A-AGTCTAAGTTCTTG-C-CTCAAATGAGACAAACA
* ** * * * ** * * *
1283502 TGAACACTCAC-ACTAAGCCCCATTCTTTTCAG-GGTTA
122 TGGATTCT-ACTAATGATCTTCATTCTTTT-TGTGATTT
* * ** ** * *
1283539 GGTACCATAAATATTGTCTTCTCATTAGGACCCATGATACTGAAGCTTTGGTTTTGCAACAAAGG
1 GGCACCATAAACACAGTCTTCTCATTAGGATACATGATATTGAAGCTTTGGTTTCGCAACAAAGG
* * * * *
1283604 ATTTCTTCCCACCAGTTTTTAT-AAGTCTAAGTTCATGCCTCAAATGCGACAAACATGGATTCTA
66 CTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCTTGCCTCAAATGAGACAAACATGGATTCTA
* *
1283668 CTGATGATTTTCATTCTTTTTGTGATTT
131 CTAATGATCTTCATTCTTTTTGTGATTT
* * * * *
1283696 GGCACAATAAACA-AATTTTCATCATTAGGATACATGATATT-AATACTTTGGTTTTGCAACAAA
1 GGCACCATAAACACAGTCTTC-TCATTAGGATACATGATATTGAA-GCTTTGGTTTCGCAACAAA
* * * * * * *
1283759 GGCTTTCTTTCAACCAATTGTTGTAAAGTATTAGTT-TGTCCCTCAAATGAGACAAATATGGATT
64 GGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCT-TGCCTCAAATGAGACAAACATGGATT
* * * *
1283823 CTACTAACGATTTTCATTCTTTTTATGTTTT
128 CTACTAATGATCTTCATTCTTTTTGTGATTT
* * * * * *
1283854 GGCACTATAAACACA-TTTTCCTCTTTAGGATATATGATATT-AATGCTTTGGTTTTGCAAGAAA
1 GGCACCATAAACACAGTCTT-CTCATTAGGATACATGATATTGAA-GCTTTGGTTTCGCAACAAA
* * * * *
1283917 GGCTTTCTTCCCACCAATTGTTGTAAAGTTTAAGTTCGTGCCTCAAATGAGAAAAATATGGATTC
64 GGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCTTGCCTCAAATGAGACAAACATGGATTC
* *
1283982 TAGTAATGATCTTCATTCTTTTTGTGATAT
129 TACTAATGATCTTCATTCTTTTTGTGATTT
* * ** * * ** * ** *
1284012 GGCACTATAAACACATTCGCCGCATTAGGATA-ATTGACATTGAAGCTTTTTTTTGGCATGAAAA
1 GGCACCATAAACACAGTCTTCTCATTAGGATACA-TGATATTGAAGCTTTGGTTTCGCAACAAAG
* ** * * * * * * * * *
1284076 CCTTTTCTTTGC-CCAATTATCCT-TAAAATCAAAGTTTTTCCCTTGAAA-AAGACAAGCATCGA
65 GC-TTTCTTCCCACCAATT-T-TTGTAAAGTCTAAGTTCTTGCC-TCAAATGAGACAAACATGGA
* **
1284138 TTCT-CTTAAT-AGTCTCCATT-TTTTTCAAGA-TT
126 TTCTAC-TAATGA-TCTTCATTCTTTTT-GTGATTT
* * * * * * * * * *
1284170 GAGAAGACA-AAACACATTGCCTTCT--TTAGGATGCACGACATTGATGCTTTAGG-GTCACAAG
1 G-GCA-CCATAAACACA--GTCTTCTCATTAGGATACATGATATTGAAGCTTT-GGTTTCGCAAC
* * * * * * *
1284231 AAAAGCTTTTCTTCTCACC-ATTTTTGATAGAA-TCTAGGTT-TTTCTCTTAAATAAGACTAACA
61 AAAGGC-TTTCTTCCCACCAATTTTTG-TA-AAGTCTAAGTTCTTGC-CTCAAATGAGACAAACA
* * * * ** * * *
1284293 TGAATACTCAC-ACTAATCCCCATTCTTTTCAG-GGTTA
122 TGGATTCT-ACTAATGATCTTCATTCTTTT-TGTGATTT
* * * *
1284330 GGCACCACAAACATAGTCTTGT--TT-GGATACATGATATTGAAGCTTTGGTTTCGCAACAAAAG
1 GGCACCATAAACACAGTCTTCTCATTAGGATACATGATATTGAAGCTTTGGTTTCGCAACAAAGG
* * *
1284392 CTTTCTTCCCACCAATTTTTGTAAAGCCTAAGTTCATGCCTCAAATGTGACAAACATGGATTCTA
66 CTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCTTGCCTCAAATGAGACAAACATGGATTCTA
*
1284457 CTAATGATTTTCATTCTTTTTGTGATTT
131 CTAATGATCTTCATTCTTTTTGTGATTT
** * * * * *
1284485 GGCACTGTAAACACA-TTTTCCTTATTAGGATATATGATATT-AACGCTTTGGTTTCACAGCAAA
1 GGCACCATAAACACAGTCTT-CTCATTAGGATACATGATATTGAA-GCTTTGGTTTCGCAACAAA
* * *
1284548 GGCTTTCTTCCCACCAATTGTTGTAAAGTTTAAGTT-TGTGCCTCAAATGAGACAAATATGGATT
64 GGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCT-TGCCTCAAATGAGACAAACATGGATT
* * * *
1284612 CTAGTAATGATCGTCATTTTTTTTGTGATAT
128 CTACTAATGATCTTCATTCTTTTTGTGATTT
* * * * * * * * ** * ** *
1284643 GGCACTATAAACACATTCTCCGCATTAGGATTA-TTGACATTGATGTTTTTCTTTTGCATGAAAA
1 GGCACCATAAACACAGTCTTCTCATTAGGA-TACATGATATTGAAGCTTTGGTTTCGCAACAAAG
* ** * * * * ** * * * *
1284707 CCTTTTCTTTGC-CCAATTATCCT-TAAAATCAAAGTTCTTCCCTTGAATAAGTCAAGCATCGAT
65 GC-TTTCTTCCCACCAATT-T-TTGTAAAGTCTAAGTTCTTGCCTCAAATGAGACAAACATGGAT
* * *** *
1284770 TCT-CTTAA-CAGTCTCCACTT-TTTTCAAGATTG
127 TCTAC-TAATGA-TCTTCA-TTCTTTTTGTGATTT
* * * * * * ** * *
1284802 GGAAGCCA-AAACACATTGCCTTCT--TTAGGATGCACGACATTGATGCTTTGGGGTCACAAGGA
1 GGCA-CCATAAACACA--GTCTTCTCATTAGGATACATGATATTGAAGCTTTGGTTTCGCAA-CA
**** * * * *
1284864 AA-GCTTTTCTTTTTGCC-ATTTTTGATAGAA-TCCAAGTT-TTTCTCTTAAATAAGACTAAA-A
62 AAGGC-TTTCTTCCCACCAATTTTTG-TA-AAGTCTAAGTTCTTGC-CTCAAATGAGAC-AAACA
* * * ** ** * *
1284924 TGAATACTCAC-ACT-AGTCCCCATTCCTTTCAG-GGTTA
122 TGGATTCT-ACTAATGA-TCTTCATT-CTTTTTGTGATTT
* * * *
1284961 GCCACCACAAACATAGTCTTCTCGTTAGGATACATGATATTGAAGCTTTGGTTTCGCAACAAAGG
1 GGCACCATAAACACAGTCTTCTCATTAGGATACATGATATTGAAGCTTTGGTTTCGCAACAAAGG
* * *
1285026 CTTTCTTCCCACCAATTTTTCTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTA
66 CTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCTTGCCTCAAATGAGACAAACATGGATTCTA
* *
1285091 GTAATGATCTTCATTCTTTTTGTGATAT
131 CTAATGATCTTCATTCTTTTTGTGATTT
* * * * * ** * *
1285119 GGCACTATGAACACATTCTCCGCATTAGGATAGTTGACATTGATA--ATTGCG--T-G--A-AAA
1 GGCACCATAAACACAGTCTTCTCATTAGGATACATGATATTGA-AGCTTTG-GTTTCGCAACAAA
* ** * * * * ** * * *
1285176 -CCTTTTCTTTGC-CCAATTATCCT-TAAAATCAAAGTTCTTCCCTTGAATAAGACAAGCATCGA
64 GGC-TTTCTTCCCACCAATT-T-TTGTAAAGTCTAAGTTCTTGCCTCAAATGAGACAAACATGGA
* * * * * ** **
1285238 TTCTCCTAA-CAGTCTCCTTTTTTTTTCAAGATGG
126 TTCTACTAATGA-TCTTCATTCTTTTT-GTGATTT
* * * * * ** * ** * *
1285272 GGAAGCCA-AAGCACATTGCCTTCT--TTAGGATGCTTGGCATTGATGCTTTGGGGTCACAAGGA
1 GGCA-CCATAAACACA--GTCTTCTCATTAGGATACATGATATTGAAGCTTTGGTTTCGCAA-CA
** * * * * * *
1285334 AA-GCTTTTCTTCCTGCC-ATTTTTGATAGAA-TCCAAGTT-TTTCTCTTAAATAAGACTATCAT
62 AAGGC-TTTCTTCCCACCAATTTTTG-TA-AAGTCTAAGTTCTTGC-CTCAAATGAGACAAACAT
* * * * ** * *
1285395 GAATACTCAC-ACT-AGTC-CCATTCTTTCAGCG-TTA
123 GGATTCT-ACTAATGA-TCTTCATTCTTTTTGTGATTT
** * * * * *
1285429 GGTGCCATAAATATAGTCTTCTCATTAGGATACATCATACTGAAGCATTGGTTT-GCAACAAAGG
1 GGCACCATAAACACAGTCTTCTCATTAGGATACATGATATTGAAGCTTTGGTTTCGCAACAAAGG
* * *
1285493 CTTTCTTCCCACCAATTTTTAT-AAGTCTAAGTTCATGCCTCAAATGTGACAAACATGGATTCTA
66 CTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCTTGCCTCAAATGAGACAAACATGGATTCTA
* * *
1285557 CTGATGATTTTCATTCTTTCTGTGATTT
131 CTAATGATCTTCATTCTTTTTGTGATTT
* * * * *
1285585 GGCACAATAAACGCATTTTTGTCATTAGGATACATGATATT-AATGCTTTGGTTTCGCAACAAAG
1 GGCACCATAAACACAGTCTTCTCATTAGGATACATGATATTGAA-GCTTTGGTTTCGCAACAAAG
* * * * * *
1285649 GCTTTCTTCCAACCAATTGTTGTAAAGTCTAAGTTCGTACCTCAAATGAGACAAATATGGATTTT
65 GCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCTTGCCTCAAATGAGACAAACATGGATTCT
* * *
1285714 AGTAATGATCATCATT-TTTTTGTGATAT
130 ACTAATGATCTTCATTCTTTTTGTGATTT
* * * * * * * * ** * *** *
1285742 GGCACTATAAACACATTCTCCGCATTAGGATTA-TTGACATTGATGTTTTTCTTTTGCGTGAAAA
1 GGCACCATAAACACAGTCTTCTCATTAGGA-TACATGATATTGAAGCTTTGGTTTCGCAACAAAG
* ** * * * * *
1285806 CCTTTTCTTTGC-CCAATTATCTT-TAAAATCAAAGTTCTT-CC-CATGAATAAGACAAGCATCG
65 GC-TTTCTTCCCACCAATT-T-TTGTAAAGTCTAAGTTCTTGCCTCA--AATGAGACAAACATGG
* * * ** *
1285867 ATTCTGCTAA-CAGTCTCCATT-TTTTTCAAGATTG
125 ATTCTACTAATGA-TCTTCATTCTTTTT-GTGATTT
* * * * * * * *
1285901 GGAAGCCA-AAACACATTGCCTTCT--TTAGGATGCATGACATTGATGCTTT-GTGGTCCCAAGA
1 GGCA-CCATAAACACA--GTCTTCTCATTAGGATACATGATATTGAAGCTTTGGT-TTCGCAACA
* * * ** * * * ** *
1285962 AAAGCTTTTCTTCCCATC-GTTTTTAACAAAATCCAAG-T-TTGTCTCTTAAAAAAGACTAACAT
62 AAGGC-TTTCTTCCCACCAATTTTT-GTAAAGTCTAAGTTCTTG-C-CTCAAATGAGACAAACAT
* ** * * * ** * ** *
1286024 GAACACTCAC-ACTAAGCCCCATTCTTTTCAG-GGCTA
123 GGATTCT-ACTAATGATCTTCATTCTTTT-TGTGATTT
* * ** ** * *
1286060 GGAACCATAAATATTGTCTTCTCATTAGGACCCATGATACTGAAGCTTTGGTTTTGCAACAAAGG
1 GGCACCATAAACACAGTCTTCTCATTAGGATACATGATATTGAAGCTTTGGTTTCGCAACAAAGG
* * * * *
1286125 ATTTCTTCCCACCAGTTTTTAT-AAGTCTAAGTTCATGCCTCAAATGCGACAAACATGGATTCTA
66 CTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCTTGCCTCAAATGAGACAAACATGGATTCTA
* *
1286189 CTGATGATTTTCATTCTTTTTGTGATTT
131 CTAATGATCTTCATTCTTTTTGTGATTT
* * * * ** *
1286217 GGCACAATAAACAAATTTTTGACATTAGGATACATGATATT-AATGCTTTAGTTTCGCAACAAAG
1 GGCACCATAAACACAGTCTTCTCATTAGGATACATGATATTGAA-GCTTTGGTTTCGCAACAAAG
* * *
1286281 GCTTTCTTCCAACCAATTGTTGTAAAGTCTAAGTT-TGTGCCTCAAATGAGACAAATATGGATTC
65 GCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCT-TGCCTCAAATGAGACAAACATGGATTC
* * *
1286345 TAGC-AATGATCGTCATTTTTTTTGTGATAT
129 TA-CTAATGATCTTCATTCTTTTTGTGATTT
* * * * * * * * ** * ** *
1286375 GGCACTATAAACACATTCTCCGCATTAGGATTA-TTGACATTGATGTTTTTCTTTTGCATGAAAA
1 GGCACCATAAACACAGTCTTCTCATTAGGA-TACATGATATTGAAGCTTTGGTTTCGCAACAAAG
* ** * * ** * ** * * *
1286439 CCTTTTCTTTGC-CCAATTATCCT-TAAAATGAAAGTTCTTCCCTTGAATAAGACAAGCATCGAT
65 GC-TTTCTTCCCACCAATT-T-TTGTAAAGTCTAAGTTCTTGCCTCAAATGAGACAAACATGGAT
* * * ** *
1286502 TCTCCTAA-CAGTCTCCATT-TTTTTCAAGATTG
127 TCTACTAATGA-TCTTCATTCTTTTT-GTGATTT
* * * * * ** ** ** *
1286534 GGAAGCCA-AAACACATTGCCTTCT--TTAGGATGCACGACATTGCTGCTTTGGGGTCATAAGGA
1 GGCA-CCATAAACACA--GTCTTCTCATTAGGATACATGATATTGAAGCTTTGGTTTCGCAA-CA
* ** * * * * *
1286596 AA-GCTTTTCTTTCTGCC-ATTTTTGATAGAA-TCCAAGTT-TTTCTCTTAAATAAGACTAACAT
62 AAGGC-TTTCTTCCCACCAATTTTTG-TA-AAGTCTAAGTTCTTGC-CTCAAATGAGACAAACAT
* * * * * ** * *** * *
1286657 GAATACT-CGCACTAATCCCCATTCCTTTCAAGGTTA
123 GGATTCTAC-TAATGATCTTCATTCTTTTTGTGATTT
** * * * *
1286693 GGCACCCCAAACATAGTCTTCTCGTTAGGATACATGATATTGAAGCTTTAGTTTCGTAACAAAGG
1 GGCACCATAAACACAGTCTTCTCATTAGGATACATGATATTGAAGCTTTGGTTTCGCAACAAAGG
* * *
1286758 CTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTCCGTGCCTCAAATGAGACAAATATGGATTCTA
66 CTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCTTGCCTCAAATGAGACAAACATGGATTCTA
* *
1286823 GTAATGATCTTCATTCTTTTTGTGATAT
131 CTAATGATCTTCATTCTTTTTGTGATTT
* * * * * * * * ** * **
1286851 GGCACTATGAACACATTCTCCGCATTAGGA-AAATTGACATTGATA-TTTTTCTTTTGCATGAAA
1 GGCACCATAAACACAGTCTTCTCATTAGGATACA-TGATATTGA-AGCTTTGGTTTCGCAACAAA
** ** * * * * * ** * * *
1286914 ACCTTTTCTTTGC-CCAATTATCGTTAAAATCAAAGTTCTTCCCTTGAATAAGACAAGCATCGAT
64 GGC-TTTCTTCCCACCAATTTTTG-TAAAGTCTAAGTTCTTGCCTCAAATGAGACAAACATGGAT
* * * * *
1286978 TCTTCTAAT-AGTC-TCCTTTTTTTTTTCAAGATTG
127 TCTACTAATGA-TCTTCATTCTTTTTGT---GATTT
* * * * ** * ** * *
1287012 GGAAGCCA-AAGCACATTGCCTTCT--TTAGGATGCATGGCATTGATGCTTTGGGGTCACAAGGA
1 GGCA-CCATAAACACA--GTCTTCTCATTAGGATACATGATATTGAAGCTTTGGTTTCGCAA-CA
*** * * * * * *
1287074 AA-GCTTTTCTTCTTGCC-ATTTTTGATAGAA-TCCAAGTT-TTTCTCTTAAATAAGACTATCAT
62 AAGGC-TTTCTTCCCACCAATTTTTG-TA-AAGTCTAAGTTCTTGC-CTCAAATGAGACAAACAT
* * * ** * * **
1287135 GAATACTCAC-ACT-AGTCCCCATTCTTTTCAGCG-TAA
123 GGATTCT-ACTAATGA-TCTTCATTCTTTT-TGTGATTT
** * * * * * *
1287171 GGTGCCATAAATATAGTCTTCTCATTAGGATACATCATACTGAAGCATTGGTTTTGCAACAAAGG
1 GGCACCATAAACACAGTCTTCTCATTAGGATACATGATATTGAAGCTTTGGTTTCGCAACAAAGG
* * * *
1287236 CTTTCTTCTCACCAATTTTTAT-AAGTCTAAGTTCATGCCTCAAATGTGACAAACATGGATTCTA
66 CTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCTTGCCTCAAATGAGACAAACATGGATTCTA
* * *
1287300 CTGATGATTTTCATTCTTTCTGTGATTT
131 CTAATGATCTTCATTCTTTTTGTGATTT
* * *
1287328 GGCACAATAAACGCA-TTTTCCTCATTAGGATACATGATATT-AATGCTTTGGTTTCGCAACAAA
1 GGCACCATAAACACAGTCTT-CTCATTAGGATACATGATATTGAA-GCTTTGGTTTCGCAACAAA
* * * * * *
1287391 GGCTTTCTTCCAACAAATTGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAAACAAATATGGATTC
64 GGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCTTGCCTCAAATGAGACAAACATGGATTC
* *
1287456 CACTAATGATATTCATTCTTTTTGTGATTT
129 TACTAATGATCTTCATTCTTTTTGTGATTT
* * * * * **
1287486 GGCACTATAAAAAC-TTTTTCCTCTTTAGGATACATGATATT-AATGCTTTGGTTTCATAACAAA
1 GGCACCATAAACACAGTCTT-CTCATTAGGATACATGATATTGAA-GCTTTGGTTTCGCAACAAA
** * * * *
1287549 GGCTTTCTTTACACCAACTGTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAATATGGATTC
64 GGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCTTGCCTCAAATGAGACAAACATGGATTC
* *
1287614 TACTAATGATTTTCATTCTTTTTGTGATTC
129 TACTAATGATCTTCATTCTTTTTGTGATTT
* * * * *
1287644 GGCACTATAAAAACA-TTTTC-CACTTTAGGATACATGATATT-AATGCTTTGGTTTCGTAACGA
1 GGCACCATAAACACAGTCTTCTCA--TTAGGATACATGATATTGAA-GCTTTGGTTTCGCAACAA
*** * * *
1287706 AGGCTTTCTT-CCACCAA--ACAGTAAAGTCTAAGTTCGTGCCTCAAATGAGACGAATATGGATT
63 AGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCTTGCCTCAAATGAGACAAACATGGATT
* * * **
1287768 CCAGTAATGATCTTCATTTTTTTTGTGATAA
128 CTACTAATGATCTTCATTCTTTTTGTGATTT
* * * * * * * ** **
1287799 GGCACTATAAACACATTCTCCGCATTAGGATA-ATTGACATTGATGTTTTTCTTTCGCATTAAAG
1 GGCACCATAAACACAGTCTTCTCATTAGGATACA-TGATATTGAAGCTTTGGTTTCGCAACAAAG
* ** * * * * * * * * * *
1287863 TCTTTTCTTTGC-CTAATTATCCT-TAAAATCAAAGTTCAT-CCCCTGAATAAGACAAGCATCGA
65 GC-TTTCTTCCCACCAATT-T-TTGTAAAGTCTAAGTTCTTGCCTC-AAATGAGACAAACATGGA
* ** * *** *
1287925 TTCT-CGTAAT-AGTCTCCACACCTTTCAAGATTG
126 TTCTAC-TAATGA-TCTTCATTCTTTTTGTGATTT
* * * * * * * * * * *
1287958 GGAAGCCA-AAACACATTGCCT-TCATTGGGATACACGACATGGATGCTTTGGTGTCTCAAGAAA
1 GGCA-CCATAAACACAGT-CTTCTCATTAGGATACATGATATTGAAGCTTTGGTTTCGCAACAAA
* * * ** * *
1288021 AGCTTTTCTTCTCGCC-ATTTTTGATAGAA-TAAAAGTT-TAT-CTCTTAAATAAGA-AAGACAT
64 GGC-TTTCTTCCCACCAATTTTTG-TA-AAGTCTAAGTTCT-TGC-CTCAAATGAGACAA-ACAT
* * * ** * ** * *
1288081 GAATACCCAC-CCTAATCCCCATTCCTTTTAG-GATTA
123 GGAT-TCTACTAATGATCTTCATT-CTTTTTGTGATTT
* * * * *
1288117 GGCTCCATAAACATAGTTTTCTCATTAGGATACATGATATTGAAGCTTTGGTTTTGGAACAAAGG
1 GGCACCATAAACACAGTCTTCTCATTAGGATACATGATATTGAAGCTTTGGTTTCGCAACAAAGG
* * * * * * *
1288182 TTTTCTTCCCACCAGTTGTTGTAAAGTCTAAGTTCATGCCTTAAATGAGACAAATATGAATTCTA
66 CTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCTTGCCTCAAATGAGACAAACATGGATTCTA
* *
1288247 CTAGTGATTTTCATTCTTTTTGTGATTT
131 CTAATGATCTTCATTCTTTTTGTGATTT
* * * *
1288275 GGCACTATAAACACAAT-TTCCTCATTAGGATATATGATATT-AACGCTTTGGTTTTGCAACAAA
1 GGCACCATAAACACAGTCTT-CTCATTAGGATACATGATATTGAA-GCTTTGGTTTCGCAACAAA
* * * * * *
1288338 GGCTTTCTTCCCACCAATTGTTGTAAAGTCTACA-TTCGTGCCTCAAGTGAGCCAAATATGGATC
64 GGCTTTCTTCCCACCAATTTTTGTAAAGTCTA-AGTTCTTGCCTCAAATGAGACAAACATGGATT
** * *
1288402 CTTGTAATGATCTTCATTCCTTTTGTGATAT
128 CTACTAATGATCTTCATTCTTTTTGTGATTT
* * * * * * * ** *
1288433 GGCACTATAAACACATTCTCCGCATTAGGATA-ATTGACATTGATGTTTTTCTTTTGCATGA-AA
1 GGCACCATAAACACAGTCTTCTCATTAGGATACA-TGATATTGAAGCTTTGGTTTCGCA--ACAA
*** ** * * * * ** * * *
1288496 ACATTTTCTTTGC-CCAATTATCCT-TAAAATCAAAGTTCTTCCCTTGAATAAGACAAGCATCGA
63 AGGCTTTCTTCCCACCAATT-T-TTGTAAAGTCTAAGTTCTTGCCTCAAATGAGACAAACATGGA
* * * *** *
1288559 TTCTCCT-A-GCAGTCTCCATTTTTTTTCAAAATTG
126 TTCTACTAATG-A-TCTTCATTCTTTTT-GTGATTT
* * * * * * * * ** *
1288593 GGAAGCCA-AAACACTTTGCCTTCT--TTAGAATGCACGACATTGATGCTTTGGCGTCAG-AAGG
1 GGCA-CCATAAACAC--AGTCTTCTCATTAGGATACATGATATTGAAGCTTTGGTTTC-GCAA-C
** * * * * * *
1288654 AAA-GCTTTTCTTCCCGTC-GTTTTTGATAGAA-TCCAAGTT-TTTCTCTTAAATAAGACTAACA
61 AAAGGC-TTTCTTCCCACCAATTTTTG-TA-AAGTCTAAGTTCTTGC-CTCAAATGAGACAAACA
* * * * ** ** * *
1288715 TGAATACTCAC-ACTAATCCCCATTCTTTTCATGGTTA
122 TGGATTCT-ACTAATGATCTTCATTCTTTTTGTGATTT
* *
1288752 GGCACCACAAACATAGTCTTCTCATTAGGATACATGATATTGAAGCTTTGGTTTCGCAACAAAGG
1 GGCACCATAAACACAGTCTTCTCATTAGGATACATGATATTGAAGCTTTGGTTTCGCAACAAAGG
* * * * * *
1288817 CTTTCTTCCCACCAGTTTTTGTAAAGTTTAAGTTCATACCCCAAATGCGACAAACATGGATTCTA
66 CTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCTTGCCTCAAATGAGACAAACATGGATTCTA
** *
1288882 CCGATGATTTTCATTCTTTTTGTGATTT
131 CTAATGATCTTCATTCTTTTTGTGATTT
* * * *
1288910 GGCACAATAAACACA-TTTTCCTCATTAGGTTATATGATATT-AATGCTTTGGTTTCGCAACAAA
1 GGCACCATAAACACAGTCTT-CTCATTAGGATACATGATATTGAA-GCTTTGGTTTCGCAACAAA
* * * * * * *
1288973 GGCTTTCTTCCAACAAATTATTGTAAAGTCTAAGTCCATGCCTCTAATGAGACAAATATGGATTG
64 GGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCTTGCCTCAAATGAGACAAACATGGATT-
*
1289038 C-ACTAATGATTTTCATTCTTTTTGTGATTT
128 CTACTAATGATCTTCATTCTTTTTGTGATTT
** * * * ***
1289068 GGCACTGTAAAAACA-TTTTCCTCTTTAGGATACATGATATT-AATGCTTTGGTTTCATGACAAA
1 GGCACCATAAACACAGTCTT-CTCATTAGGATACATGATATTGAA-GCTTTGGTTTCGCAACAAA
* * * * *
1289131 GGCTTTCTTCCAACCAATTGTTGTAAAGTCTAAGTTCGTACCTCAAATGAGACAAATATGGATTG
64 GGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCTTGCCTCAAATGAGACAAACATGGATT-
*
1289196 C-ACTAATGATTTTCATTCTTTTTGTGATTT
128 CTACTAATGATCTTCATTCTTTTTGTGATTT
* * * * * * * ** *
1289226 CGCACTATAAAAACA-TTTTCTTCTTTAGGATACCTGATA-TAAATGCTTTGGTTTCATAACAAT
1 GGCACCATAAACACAGTCTTC-TCATTAGGATACATGATATTGAA-GCTTTGGTTTCGCAACAAA
* * * *
1289289 GGCTTTCTTCCCACCAATTATTGTAAAGTCTACGTTCGTGCCTCAAATGAGACAAATATGG---C
64 GGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCTTGCCTCAAATGAGACAAACATGGATTC
* *
1289351 TACTAATGATTTTCATTCTTTTTGTGATTC
129 TACTAATGATCTTCATTCTTTTTGTGATTT
* * * * * * *
1289381 GGCACTATAAAAACA-TTTTACTCTTTAGGATACAAGATATTAAAGCTTTGGTTTCGTAACAAAG
1 GGCACCATAAACACAGTCTT-CTCATTAGGATACATGATATTGAAGCTTTGGTTTCGCAACAAAG
* * * **
1289445 GCTTTCTTCCCACCAATTGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATTAATTCT
65 GCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCTTGCCTCAAATGAGACAAACATGGATTCT
* * **
1289510 AGTAATGATCTTCATTTTTTTTTGTGATAA
130 ACTAATGATCTTCA-TTCTTTTTGTGATTT
* * * * * * * * * ** * **
1289540 GGCACTATAAACAAATTCTCCACATTAGGATA-ATTGACATCGATGTTTTTCTTTTGCATTAAAG
1 GGCACCATAAACACAGTCTTCTCATTAGGATACA-TGATATTGAAGCTTTGGTTTCGCAACAAAG
* ** * * ** ** * * * * *
1289604 TCTTTTCTTTGC-CCAATTATCCT-TAAAATGAAAGTTC-AACCCCTGAATAAGACAAGCATCGA
65 GC-TTTCTTCCCACCAATT-T-TTGTAAAGTCTAAGTTCTTGCCTC-AAATGAGACAAACATGGA
* * * * *** *
1289666 TTCT-CGTAATAATCTCCACTCCTTTCAAGATTG
126 TTCTAC-TAATGATCTTCATTCTTTTTGTGATTT
* * * * * * *
1289699 GGAAGCCA-AAACAC-GT-TGCCTTCATTAGGATACACGATATTGATGCTTTGGTGTCTCAAGAA
1 GGCA-CCATAAACACAGTCT-TC-TCATTAGGATACATGATATTGAAGCTTTGGTTTCGCAACAA
* * * * *
1289761 AAGCTTTTCTTCTCGCC-ATTTTTGATAGAA-TC-AA-TGT-TTGTCTCTTAAATAAGA-AAGAC
63 AGGC-TTTCTTCCCACCAATTTTTG-TA-AAGTCTAAGT-TCTTG-C-CTCAAATGAGACAA-AC
* * * * ** * *
1289820 TTGAATACCCACCCTAA-G--CCCCATTCTTTTCAG-GATTA
121 ATGGAT-TCTA--CTAATGATCTTCATTCTTTT-TGTGATTT
* * * * *
1289858 GGCTCCATAAACATAGTCTTCTCATTAGGATACATGATATTGAAACTTTGGATTCGTAACAAAGG
1 GGCACCATAAACACAGTCTTCTCATTAGGATACATGATATTGAAGCTTTGGTTTCGCAACAAAGG
* * *
1289923 CTTTCTTCCCACCAATTGTTGTAAAG-CTAAGTTCGTGCCTCAAATGAGACAAAAATGGATTCTA
66 CTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCTTGCCTCAAATGAGACAAACATGGATTCTA
* * * *
1289987 CTAGTGATTTTCTTTCTTTTTGTGAATT
131 CTAATGATCTTCATTCTTTTTGTGATTT
* * * * *
1290015 AGCACTATAAA-AGCA-TTTTCCTCTTTAGGATACATGATATT-AATGCTTTGGTTTCGTAACAA
1 GGCACCATAAACA-CAGTCTT-CTCATTAGGATACATGATATTGAA-GCTTTGGTTTCGCAACAA
* * * *
1290077 AGGCTTTCTTCCCACCAATTATTGTAAAGTCTAAGTTCGTGCCTTAAATGAGACAAATATGGATT
63 AGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCTTGCCTCAAATGAGACAAACATGGATT
** * * * **
1290142 CTA-GGATTATCATCGTTCTTTTTGTGATAA
128 CTACTAATGATCTTCATTCTTTTTGTGATTT
* * * * * * ** * ** *
1290172 GGCACTATAAAAACATTCTCCGCATTAGGATA-ATTGATATTGATGCTTTTCTTTTGCATGAAAA
1 GGCACCATAAACACAGTCTTCTCATTAGGATACA-TGATATTGAAGCTTTGGTTTCGCAACAAAG
* ** * * * * ** * * *
1290236 TCTTTTCTTTGC-CCAATTATCCT-TAAAAT-TAAAGTTCATCCCTTGAATAAGACAAGCATCGA
65 GC-TTTCTTCCCACCAATT-T-TTGTAAAGTCT-AAGTTCTTGCCTCAAATGAGACAAACATGGA
* * * **** *
1290298 TTCTCCTAA-CAGTCTCCATT-TTCTCCAAGATTG
126 TTCTACTAATGA-TCTTCATTCTT-TTTGTGATTT
* * * * * * * * *
1290331 GGAAGCGA-AAACACATTGCCTT-T-GTTAGGATACACGACATTGATGCTTTGGTGTCGCAATGA
1 GGCA-CCATAAACACA--GTCTTCTCATTAGGATACATGATATTGAAGCTTTGGTTTCGCAA-CA
* * * * * * * *
1290393 AAAGCTTTTCTTCTCGCC-GTTTTTGATAGAA-TCAAAG--GTTGTCTCTTAAATAAGA-AAGAC
62 AAGGC-TTTCTTCCCACCAATTTTTG-TA-AAGTCTAAGTTCTTG-C-CTCAAATGAGACAA-AC
* * * * ** * * *
1290453 ATGAATACTCAC-ACTAATCCCCATTCTTTTCAG-GGTTA
121 ATGGATTCT-ACTAATGATCTTCATTCTTTT-TGTGATTT
* * *
1290491 GGCACCATAAACATAGTCTTCTCGTTAGGATACATGATATTGAAGCTTTGGTTTTGCAACAAAGG
1 GGCACCATAAACACAGTCTTCTCATTAGGATACATGATATTGAAGCTTTGGTTTCGCAACAAAGG
* * * *
1290556 CTTTCTTCCCCCCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGTGACAACCATGGATTCTA
66 CTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCTTGCCTCAAATGAGACAAACATGGATTCTA
* *
1290621 CTAATGATTTTCATTCTTTTTGTGATTG
131 CTAATGATCTTCATTCTTTTTGTGATTT
* * * * *
1290649 GGCACTATAAACGCA-TTTTCCTTATTAGGATATATGAT
1 GGCACCATAAACACAGTCTT-CTCATTAGGATACATGAT
1290687 GACAACCATG
Statistics
Matches: 12111, Mismatches: 3495, Indels: 2042
0.69 0.20 0.12
Matches are distributed among these distances:
150 22 0.00
151 87 0.01
152 162 0.01
153 117 0.01
154 74 0.01
155 431 0.04
156 306 0.03
157 1950 0.16
158 4320 0.36
159 3658 0.30
160 757 0.06
161 195 0.02
162 28 0.00
163 4 0.00
ACGTcount: A:0.29, C:0.20, G:0.15, T:0.36
Consensus pattern (158 bp):
GGCACCATAAACACAGTCTTCTCATTAGGATACATGATATTGAAGCTTTGGTTTCGCAACAAAGG
CTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCTTGCCTCAAATGAGACAAACATGGATTCTA
CTAATGATCTTCATTCTTTTTGTGATTT
Found at i:1274185 original size:898 final size:898
Alignment explanation
Indices: 1272549--1274226 Score: 2487
Period size: 898 Copynumber: 1.9 Consensus size: 898
1272539 ACACTTTTTC
* * * *
1272549 CTCATTAGGATACATGATATTCATGCTTTGATTTGGCAACAAAGGCTTTCTTCCCACCAATTGTT
1 CTCATTAGGATACACGATATTAAAGCTTTGATTTCGCAACAAAGGCTTTCTTCCCACCAATTGTT
* * *
1272614 ATAAAGTCTATGTTGGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTCGAATCTTTT
66 ATAAAGTCTATGTTCGTGCCTCAAATCAGACAAATATGGATTCTAGTAATGATCTCGAATCTATT
* * * * *
1272679 TGTGATATGGCACTATAAACACAATCTCCTCATTACGATAAAAGACATTGAAGTTTTTCTTTTGC
131 TGTGATAAGGCACAATAAACACAATCTCCGCATTACGATAAAAGACATTGAAGCTTTGCTTTTGC
* * * * *
1272744 ATGAAAATCTTTTCTTTCCCCTATTTTCCTTAAAATGAAAGTTCTTCCCTTGAATAAGACAAGCA
196 ATGAAAATCTTTTCTTTCCCCAATTATCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCA
* * *
1272809 TCGATTCTCCAAACAGTCTCCATTTTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTCTTTAG
261 TCGATTCTCCAAACACTCTCCATTTTTTCCAAGATTGGGAAGCCAAAACACATTGCCTTCATTAG
* * * *
1272874 GATGCATGACATTGATGCTTTAGGGTCACAAAGAAAGCTTTTCTTCCCGTCGTTTTTGATAGAAT
326 GATACACGACATTGATGCTTTAGGGTCACAAAGAAAGCTTTTCTTCCAGCCGTTTTTGATAGAAT
* * * * * *
1272939 CCAAGTTTTTCTCTTAAATAAGACTAACATGAATACTCACACTAATCCCCATTCTTTTCCGGGTT
391 CAAAGTTTGTCTCCTAAATAAGACAAACATGAATACTCACACTAATCCCCATTCCTTTCAGGGTT
* *
1273004 AGGTACCATAAATATAGTCTTCTCATTAGGATACATCATACTGAAGCATTGGTCCTGCAACAAAG
456 AGGCACCATAAACATAGTCTTCTCATTAGGATACATCATACTGAAGCATTGGTCCTGCAACAAAG
*
1273069 GCTTTCTTCCAACCAGTTTTTGTAAAGTCTAAGTTCATGACTCAAATGCGACAAACATGGATTCT
521 GCTTTCTTCCAACCAATTTTTGTAAAGTCTAAGTTCATGACTCAAATGCGACAAACATGGATTCT
* * *
1273134 ACTGATGATTTTTATTCTTTTTGTGATTTGGCACAATAAACACATTTTCCTCATTAGGATACATG
586 ACTAATGATTTTCATTCTTTCTGTGATTTGGCACAATAAACACATTTTCCTCATTAGGATACATG
1273199 ATATTAATGCTTTGGCTTCACAACAAAGGCTTTCTTCCAACCAATTGTTGTAAAGTCTAAGTTCG
651 ATATTAATGCTTTGGCTTCACAACAAAGGCTTTCTTCCAACCAATTGTTGTAAAGTCTAAGTTCG
* * *
1273264 TGCCTCAAATGAGATAAATATGGATTCTACTAATGATTTTCATTCTTTACGTGATTTGGCACTAT
716 TGCCTCAAATGAGAGAAATATGGATTCTACTAATGATCTTCATTCTTTACGTGATATGGCACTAT
1273329 AAAGGCTTTTTTCCCGCCATTTTTGATTGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAA
781 AAAGGCTTTTTTCCCGCCATTTTTGATTGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAA
1273394 TACTCACAAAAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATTGTCAT
846 TACTCACAAAAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATTGTCAT
* * *
1273447 CTCATTAGGATACACGATATTAAAGCTTTGGTTTCGCAACAAATGTTTTCTTCCCACCAATTGTT
1 CTCATTAGGATACACGATATTAAAGCTTTGATTTCGCAACAAAGGCTTTCTTCCCACCAATTGTT
* * * *
1273512 GTAAAGTCTCA-GTTCGTGCCTCAAATCAGACATATATGGATTCTAGTATTGATCATC-ATTCTA
66 ATAAAGTCT-ATGTTCGTGCCTCAAATCAGACAAATATGGATTCTAGTAATGATC-TCGAATCTA
* * * ** *
1273575 TTTGTGATAAGGCACAATAAACATATTCTCCGCATTAGGATAATTGACATTGATGCTTTGCTTTT
129 TTTGTGATAAGGCACAATAAACACAATCTCCGCATTACGATAAAAGACATTGAAGCTTTGCTTTT
* *
1273640 GCATGGAAATCTTTTCTTTGCCCAATTATCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAG
194 GCATGAAAATCTTTTCTTTCCCCAATTATCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAG
* *
1273705 GATCGATTCTCCTAACACTCTCCATTTTTTCCAAGATTGGGAAGCCAAAACACATTGCCTTCATT
259 CATCGATTCTCCAAACACTCTCCATTTTTTCCAAGATTGGGAAGCCAAAACACATTGCCTTCATT
* *
1273770 AGGATACACGACATTGATGCTTT-GGTGT-AGC-AGGAAAAGCTTTTTTTCCAGCCGTTTTTGAT
324 AGGATACACGACATTGATGCTTTAGG-GTCA-CAAAG-AAAGCTTTTCTTCCAGCCGTTTTTGAT
* *
1273832 AGAATCAAAAG-TTGTCTCCTAAATAAGA-AAGACGTGAATACTCACACTAAT-GCCATTCCTTT
386 AGAATC-AAAGTTTGTCTCCTAAATAAGACAA-ACATGAATACTCACACTAATCCCCATTCCTTT
* * * * *
1273894 CAGGGTTAGGCACCATAAACATAGTCTTCTCGTTAGGATACATGATATTGAAGCTTTGGT-TTCG
449 CAGGGTTAGGCACCATAAACATAGTCTTCTCATTAGGATACATCATACTGAAGCATTGGTCCT-G
* * *
1273958 CAACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGCGATAAACA
513 CAACAAAGGCTTTCTTCCAACCAATTTTTGTAAAGTCTAAGTTCATGACTCAAATGCGACAAACA
*
1274023 TGGATTCTACTAATGATTTTCATTCTTTCTGTGATTTGGCACTATAAACACATTTTCCTCATTAG
578 TGGATTCTACTAATGATTTTCATTCTTTCTGTGATTTGGCACAATAAACACATTTTCCTCATTAG
* * * * *
1274088 GATATATGATATTAATGCTTT-GCTTTCGCAATAAAGGCTTTCTTCCCACCGATTGTTGTAAAGT
643 GATACATGATATTAATGCTTTGGC-TTCACAACAAAGGCTTTCTTCCAACCAATTGTTGTAAAGT
* **
1274152 CTTAAGTTCGCT-CCTCAAATGAGAGAAATATGGATTCTAGTAATGATCTTCATTCTTTTTGTGA
707 C-TAAGTTCG-TGCCTCAAATGAGAGAAATATGGATTCTACTAATGATCTTCATTCTTTACGTGA
1274216 TATGGCACTAT
770 TATGGCACTAT
1274227 GAACACATTC
Statistics
Matches: 692, Mismatches: 77, Indels: 22
0.87 0.10 0.03
Matches are distributed among these distances:
896 3 0.00
897 248 0.36
898 434 0.63
899 7 0.01
ACGTcount: A:0.30, C:0.20, G:0.15, T:0.35
Consensus pattern (898 bp):
CTCATTAGGATACACGATATTAAAGCTTTGATTTCGCAACAAAGGCTTTCTTCCCACCAATTGTT
ATAAAGTCTATGTTCGTGCCTCAAATCAGACAAATATGGATTCTAGTAATGATCTCGAATCTATT
TGTGATAAGGCACAATAAACACAATCTCCGCATTACGATAAAAGACATTGAAGCTTTGCTTTTGC
ATGAAAATCTTTTCTTTCCCCAATTATCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCA
TCGATTCTCCAAACACTCTCCATTTTTTCCAAGATTGGGAAGCCAAAACACATTGCCTTCATTAG
GATACACGACATTGATGCTTTAGGGTCACAAAGAAAGCTTTTCTTCCAGCCGTTTTTGATAGAAT
CAAAGTTTGTCTCCTAAATAAGACAAACATGAATACTCACACTAATCCCCATTCCTTTCAGGGTT
AGGCACCATAAACATAGTCTTCTCATTAGGATACATCATACTGAAGCATTGGTCCTGCAACAAAG
GCTTTCTTCCAACCAATTTTTGTAAAGTCTAAGTTCATGACTCAAATGCGACAAACATGGATTCT
ACTAATGATTTTCATTCTTTCTGTGATTTGGCACAATAAACACATTTTCCTCATTAGGATACATG
ATATTAATGCTTTGGCTTCACAACAAAGGCTTTCTTCCAACCAATTGTTGTAAAGTCTAAGTTCG
TGCCTCAAATGAGAGAAATATGGATTCTACTAATGATCTTCATTCTTTACGTGATATGGCACTAT
AAAGGCTTTTTTCCCGCCATTTTTGATTGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAA
TACTCACAAAAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATTGTCAT
Found at i:1274794 original size:634 final size:634
Alignment explanation
Indices: 1273447--1275360 Score: 2955
Period size: 634 Copynumber: 3.0 Consensus size: 634
1273437 ACATTGTCAT
* * * * *
1273447 CTCATTAGGATACACGATATTAAAGCTTTGGTTTCGCAACAAATGTTTTCTTCCCACCAATTGTT
1 CTCATTAGGATATATGATATTAATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTGTT
* * * * * *
1273512 GTAAAGTCTCAGTTCGTGCCTCAAATCAGACATATATGGATTCTAGTATTGATCATCATTCTATT
66 GTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATTCTTTT
* * * * *
1273577 TGTGATAAGGCACAATAAACATATTCTCCGCATTAGGATAATTGACATTGATGCTTTGCTTTTGC
131 TGTGATATGGCACTATAAACACATTCTCCGCATTAGGATAATTGACATTGATGTTTTTCTTTTGC
* * * * * *
1273642 ATGGAAATCTTTTCTTTGCCCAATTATCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGGA
196 ATGAAAACCTTTTCTTTGCCCAATTATCCTTAAAATCAAAATTCTTCCCTTGAATAAGACAAGCA
* * *
1273707 TCGATTCTCCTAACACTCTCCATTTTTTCCAAGATTGGGAAGCCAAAACACATTGCCTTCATTAG
261 TCGATTCTCCTAACAATCTCCATTTTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTCTTTAG
* * *
1273772 GATACACGACATTGATGCTTTGGTGT-AGC-AGGAAAAGCTTTT-TTTCCAGCCGTTTTTGATAG
326 GATGCACGACATTGATGCTTTGGGGTCA-CAAGG-AAAGCTTTTCTTT-CTGCCGTTTTTGATAG
* * * * * * *
1273834 AATCAAAAGTTGTCTCCTAAATAAGA-AAGACGTGAATACTCACACTAAT-GCCATTCCTTTCAG
388 AATCCAAATTTTTCTCTTAAATAAGACTA-ACATGAATACTCACACTAATCCCCATTCCTTTCAG
*
1273897 GGTTAGGCACCATAAACATAGTCTTCTCGTTAGGATACATGATATTGAAGCTTTGGTTTCGCAAC
452 GGTTAGGCACCACAAACATAGTCTTCTCGTTAGGATACATGATATTGAAGCTTTGGTTTCGCAAC
* *
1273962 AAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGCGATAAACATGGA
517 AAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGCAACAAACATGGA
*
1274027 TTCTACTAATGATTTTCATTCTTTCTGTGATTTGGCACTATAAACACATTTTC
582 TTCTACTAATGATTTTCATTCTTTTTGTGATTTGGCACTATAAACACATTTTC
* * *
1274080 CTCATTAGGATATATGATATTAATGCTTTGCTTTCGCAATAAAGGCTTTCTTCCCACCGATTGTT
1 CTCATTAGGATATATGATATTAATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTGTT
*
1274145 GTAAAGTCTTAAGTTCGCT-CCTCAAATGAGAGAAATATGGATTCTAGTAATGATCTTCATTCTT
66 GTAAAGTC-TAAGTTCG-TGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATTCTT
* *
1274209 TTTGTGATATGGCACTATGAACACATTCTCCGCATTAGGATAATTGACATTGATATTTTTCTTTT
129 TTTGTGATATGGCACTATAAACACATTCTCCGCATTAGGATAATTGACATTGATGTTTTTCTTTT
1274274 GCATGAAAACCTTTTCTTTGCCCAATTATCCTTAAAATCAAAATTCTTCCCTTGAATAAGACAAG
194 GCATGAAAACCTTTTCTTTGCCCAATTATCCTTAAAATCAAAATTCTTCCCTTGAATAAGACAAG
* *
1274339 CATCGATTCTCCTAACAGTCTCCATTTTTTTCAAGATTGGGAAGCCAAAACACATTGCATTCTTT
259 CATCGATTCTCCTAACAATCTCCATTTTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTCTTT
1274404 AGGATGCACGACATTGATGCTTTGGGGTCACAAGGAAAGCTTTTCTTTCTGCCGTTTTTGATAGA
324 AGGATGCACGACATTGATGCTTTGGGGTCACAAGGAAAGCTTTTCTTTCTGCCGTTTTTGATAGA
* * * *
1274469 ATCCAAATTTTTCTGTTAAACAAGACTAACATGAATACTCGCACTAATCCCCATTCCTTTGAGGG
389 ATCCAAATTTTTCTCTTAAATAAGACTAACATGAATACTCACACTAATCCCCATTCCTTTCAGGG
* *
1274534 TTAGGCACCACAAACATAGTCTTCTCGTTTGGATACATGATATTGAAGCTTTGGTTTCGTAACAA
454 TTAGGCACCACAAACATAGTCTTCTCGTTAGGATACATGATATTGAAGCTTTGGTTTCGCAACAA
* *
1274599 AAGCTTTCTTCCCACCAATTTTTGTAAAGCCTAAGTTCATGCCTCAAATGCAACAAACATGGATT
519 AGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGCAACAAACATGGATT
*
1274664 CTACTAATGATTTTCATTCTTTTTGTGATTTGGCAGTATAAACACATTTTC
584 CTACTAATGATTTTCATTCTTTTTGTGATTTGGCACTATAAACACATTTTC
* * *
1274715 CTCATTAGGATATATGATATTAATGATTTGGTTTCACAACAAAGGCTTTCTTGCCACCAATTGTT
1 CTCATTAGGATATATGATATTAATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTGTT
* *
1274780 GTAAAGTCTAAGTTCGTGCCTCAAATGAAACAAATATGTATTCTAGTAATGATCTTCATT-TTTT
66 GTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATTCTTTT
* *
1274844 TCGTGATATGGCACTATAAACACATTCTCTGCATTAGGATTATTGACATTGATGTTTTTCTTTTG
131 T-GTGATATGGCACTATAAACACATTCTCCGCATTAGGATAATTGACATTGATGTTTTTCTTTTG
* * *
1274909 CATGAAAACCTTTTCTTTGCCCAGTAATCCTTAAACA-CAAACTTCTTCCCTTGAATAAGACAAG
195 CATGAAAACCTTTTCTTTGCCCAATTATCCTTAAA-ATCAAAATTCTTCCCTTGAATAAGACAAG
*
1274973 CATCGATTCTCCTAACAATCTCCATTTTTTTCAAGATTGGGAAGCCAAAACATATTGCCTTCTTT
259 CATCGATTCTCCTAACAATCTCCATTTTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTCTTT
* *
1275038 AGGATGCACGACATTGATGCTTTGTGGTCACAAGGAAAGCTTTTCTTTCTGCCATTTTTGATAGA
324 AGGATGCACGACATTGATGCTTTGGGGTCACAAGGAAAGCTTTTCTTTCTGCCGTTTTTGATAGA
* * *
1275103 ATCCAAGTTTTTCTCTTAAATAAGACTAAAATGAATACTCACACTAGTCCCCATTCCTTTCAGGG
389 ATCCAAATTTTTCTCTTAAATAAGACTAACATGAATACTCACACTAATCCCCATTCCTTTCAGGG
*
1275168 TTAGGCACCACAAACATAGTCTTCTCATTAGGATACATGATATTGAAGCTTTGGTTTCGCAACAA
454 TTAGGCACCACAAACATAGTCTTCTCGTTAGGATACATGATATTGAAGCTTTGGTTTCGCAACAA
* * *
1275233 AGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTACCTCAAATG-AGACAAATATGGAT
519 AGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGCA-ACAAACATGGAT
* * * *
1275297 TCTAGTAATGATCTTCATTCTTTTTGTGATATGGCACTATAAACACATTCTC
583 TCTACTAATGATTTTCATTCTTTTTGTGATTTGGCACTATAAACACATTTTC
*
1275349 CGCATTAGGATA
1 CTCATTAGGATA
1275361 ATTGACATTG
Statistics
Matches: 1173, Mismatches: 97, Indels: 21
0.91 0.08 0.02
Matches are distributed among these distances:
633 72 0.06
634 838 0.71
635 263 0.22
ACGTcount: A:0.29, C:0.20, G:0.15, T:0.35
Consensus pattern (634 bp):
CTCATTAGGATATATGATATTAATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTGTT
GTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATTCTTTT
TGTGATATGGCACTATAAACACATTCTCCGCATTAGGATAATTGACATTGATGTTTTTCTTTTGC
ATGAAAACCTTTTCTTTGCCCAATTATCCTTAAAATCAAAATTCTTCCCTTGAATAAGACAAGCA
TCGATTCTCCTAACAATCTCCATTTTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTCTTTAG
GATGCACGACATTGATGCTTTGGGGTCACAAGGAAAGCTTTTCTTTCTGCCGTTTTTGATAGAAT
CCAAATTTTTCTCTTAAATAAGACTAACATGAATACTCACACTAATCCCCATTCCTTTCAGGGTT
AGGCACCACAAACATAGTCTTCTCGTTAGGATACATGATATTGAAGCTTTGGTTTCGCAACAAAG
GCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGCAACAAACATGGATTCT
ACTAATGATTTTCATTCTTTTTGTGATTTGGCACTATAAACACATTTTC
Found at i:1277452 original size:634 final size:634
Alignment explanation
Indices: 1275191--1277729 Score: 3836
Period size: 634 Copynumber: 4.0 Consensus size: 634
1275181 ACATAGTCTT
*
1275191 CTCATTAGGATACATGATATTGAA-GCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTTT
1 CTCATTAGGATACATGATATT-AATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTGT
1275255 TGTAAAGTCTAAGTTCGTACCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATTCTTT
65 TGTAAAGTCTAAGTTCGTACCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATTCTTT
**
1275320 TTGTGATATGGCACTATAAACACATTCTCCGCATTAGGATAATTGACATTGA------T-AATTG
130 TTGTGATATGGCACTATAAACACATTCTCCGCATTAGGATAATTGACATTGATGTTTTTCTTTTG
* * * *
1275378 CGTGAAAACCTTTTCTTTGCCCAATTATCTTTAAAATCAAAGTTCTCCCCTTGATTAAGACAAGC
195 CATGAAAACCTTTTCTTTGCCCAATTATCCTTAAAATCAAAGTTCTTCCCTTGAATAAGACAAGC
** *
1275443 ATCGATTCTGTTAACAGTCTCCATTTTTTTTCAAGATTGGGAAGCCAAAACACAATGCCTTCTTT
260 ATCGATTCTCCTAACAGTCTCCA-TTTTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTCTTT
* *
1275508 AGGATGCATGACATTGATGCTTTGGGGTCACAAGGAAAGCTTTTC-TTCTTGCAGTTTTTGATAG
324 AGGATGCACGACATTGATGCTTTGGGGTCACAAGGAAAGCTTTTCTTTC-TGCCGTTTTTGATAG
* * * * *
1275572 AATGCAAGTTTTTCTCTTAAATAAGACTAACATGAATACTCACACTAGTCCCCATTCTTTTAAGG
388 AATCCAAATTTTTCTCTTAAATAAGACTAACATGAATACTCACACTAATCCCCATTCCTTTCAGG
* * * * ** * * * * *
1275637 GTTAGGTACCATAAATATAGTTTTCTTATTAGCATACAGGATACTGAAGCATTGGTTTTGCAACA
453 GTTAGGCACCACAAACATAGTCTTCTCGTTAGGATACATGATATTGAAGCTTTGGTTTCGCAACA
* *
1275702 AAGGCTTTCTTCCCACCAGTTTTTAT-AAGTCTAAGTTCATGCCTCAAATGCGACAAACATGGAT
518 AAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGCGACAAACATGGAT
* * * *
1275766 TCTACTAATGATTTTCGTTCTTTTTGTGATTTGGCACAATAAACACATTTTT
583 TCTACTAATGATTCTCATTCTTTTTGTGATTTGGCACTATAAACACATTTTC
* * *
1275818 GTCATTAGGATACATGACATTAATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCAACCAATTGTT
1 CTCATTAGGATACATGATATTAATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTGTT
* * *
1275883 GTAAAGTCTAAGTTTGTACCTCCAATGAGACAAATATGGATTTTAGTAATGATCTTCATT-TTTT
66 GTAAAGTCTAAGTTCGTACCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATTCTTTT
*
1275947 TGTGATATGGCACTATAAACACATTCTCCGCATTAGGATTATTGACATTGATGTTTTTCTTTTGC
131 TGTGATATGGCACTATAAACACATTCTCCGCATTAGGATAATTGACATTGATGTTTTTCTTTTGC
* *
1276012 GTGAAAACCTTTTCTTTGCCCAATTATCTTTAAAATCAAAGTT-TTCCCTTGAATAAGACAAGCA
196 ATGAAAACCTTTTCTTTGCCCAATTATCCTTAAAATCAAAGTTCTTCCCTTGAATAAGACAAGCA
* * *
1276076 TCGATTCTCCTAACAGTCTCAATTTTTTCCAAGATTGGGAAGCCAAAACACATTGCCTTCATTAG
261 TCGATTCTCCTAACAGTCTCCATTTTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTCTTTAG
* * * *
1276141 GATACACGACATTGATGCTTTGGTGTCGC-AGGAAAAGCTTTT-TTTCTAGCTGTTTTTGATAGA
326 GATGCACGACATTGATGCTTTGGGGTCACAAGG-AAAGCTTTTCTTTCT-GCCGTTTTTGATAGA
* * * ** * * *
1276204 ATCAAAAGTTGTCTCCCAAATAAGA-AAGACGTGAATACTCACACTAATCCCCATTCTTTTCAGG
389 ATCCAAATTTTTCTCTTAAATAAGACTA-ACATGAATACTCACACTAATCCCCATTCCTTTCAGG
* *
1276268 GTTAGGCACCATAAACATAGGCTTCTCGTTAGGATACATGATATTGAAGCTTTGGTTTCGCAACA
453 GTTAGGCACCACAAACATAGTCTTCTCGTTAGGATACATGATATTGAAGCTTTGGTTTCGCAACA
* *
1276333 AAGGCTTTCTTCCTACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGCGATAAACATGGAT
518 AAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGCGACAAACATGGAT
* *
1276398 TCTACTAATGATTTTCATTCTTTCTGTGATTTGGCACTATAAACACATTTTC
583 TCTACTAATGATTCTCATTCTTTTTGTGATTTGGCACTATAAACACATTTTC
* * * * * * *
1276450 CTCACTAAGATATATGATATTAATGTTTTGCTTTCGCAATAAAGGCTTTCTTCCCACCGATTGTT
1 CTCATTAGGATACATGATATTAATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTGTT
* * * *
1276515 GCAAAGTCTTAACTTCGCACCTCAAATGAGACAAATATGGATTGTAGTAATGATCTTCATTCTTT
66 GTAAAGTC-TAAGTTCGTACCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATTCTTT
* *
1276580 TTGTGATATGGCACTATGAACACATTCTCCGCATTAGGATAATTGACATTGATATTTTTCTTTTG
130 TTGTGATATGGCACTATAAACACATTCTCCGCATTAGGATAATTGACATTGATGTTTTTCTTTTG
*
1276645 CATGAAAACTTTTTCTTTGCCCAATTATCCTTAAAATCAAAGTTCTTCCCTTGAATAAGACAAGC
195 CATGAAAACCTTTTCTTTGCCCAATTATCCTTAAAATCAAAGTTCTTCCCTTGAATAAGACAAGC
1276710 ATCGATTCTCCTAACAGTCTCCATTTTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTCTTTA
260 ATCGATTCTCCTAACAGTCTCCATTTTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTCTTTA
1276775 GGATGCACGACATTGATGCTTTGGGGTCACAAGGAAAGCTTTTCTTTCTGCCGTTTTTGATAGAA
325 GGATGCACGACATTGATGCTTTGGGGTCACAAGGAAAGCTTTTCTTTCTGCCGTTTTTGATAGAA
* * *
1276840 TCCAAATTTTTCTGTTAAACAAGACTAACATGAATACTCGCACTAATCCCCATTCCTTTCAGGGT
390 TCCAAATTTTTCTCTTAAATAAGACTAACATGAATACTCACACTAATCCCCATTCCTTTCAGGGT
* *
1276905 TAGGCACCACAAACACAGTCTTCTCGTTTGGATACATGATATTGAAGCTTTGGTTTCGCAACAAA
455 TAGGCACCACAAACATAGTCTTCTCGTTAGGATACATGATATTGAAGCTTTGGTTTCGCAACAAA
* * *
1276970 AGCTTTCTTCCCACCAATTTTTGTAAAGCCTAAGTTCATGCCTCAAATGCGACAAACAAGGATTC
520 GGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGCGACAAACATGGATTC
1277035 TACTAATGATTCTCATTCTTTTTGTGATTTGGCACTATAAACACATTTTC
585 TACTAATGATTCTCATTCTTTTTGTGATTTGGCACTATAAACACATTTTC
* * * *
1277085 CTCATTAGGATATATGATATTAATGCTTTGATTTCACAACAAAGGCTTTCTTTCCACCAATTGTT
1 CTCATTAGGATACATGATATTAATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTGTT
* * *
1277150 GTAAAGTCTAAGTTCGTGCCTCAAATGAAACAAATATGTATTCTAGTAATGATCTTCATT-TTTT
66 GTAAAGTCTAAGTTCGTACCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATTCTTTT
* *
1277214 TCGTGATATGGCACTATAAACACATTCTCTGCATTAGGATTATTGACATTGATGTTTTTCTTTTG
131 T-GTGATATGGCACTATAAACACATTCTCCGCATTAGGATAATTGACATTGATGTTTTTCTTTTG
* * * *
1277279 CATGAAAACCTTTTCTTTGCCTAAGTATCCTTAAAAACAAACTTCTTCCCTTGAATAAGACAAGC
195 CATGAAAACCTTTTCTTTGCCCAATTATCCTTAAAATCAAAGTTCTTCCCTTGAATAAGACAAGC
* *
1277344 ATCGATTCTCCTAACAATCTCCATTTTTTTCAAGATTGGGAAGCCAAAACACATTGCTTTCTTTA
260 ATCGATTCTCCTAACAGTCTCCATTTTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTCTTTA
* * *
1277409 GGATGCACGACATTGATGCTTTTGGGTCACAAGGAAAGCTTTTCTTTCTGCCATTTTTTATAGAA
325 GGATGCACGACATTGATGCTTTGGGGTCACAAGGAAAGCTTTTCTTTCTGCCGTTTTTGATAGAA
* * *
1277474 TCCAAGTTTTTCTCTTAAATAAGACTAAAATGAATACTCACACTAGTCCCCATTCCTTTCAGGGT
390 TCCAAATTTTTCTCTTAAATAAGACTAACATGAATACTCACACTAATCCCCATTCCTTTCAGGGT
1277539 TAGGCACCACAAACATAGTCTTCTCGTTAGGATACATGATATTGAAGCTTTGGTTTCGCAACAAA
455 TAGGCACCACAAACATAGTCTTCTCGTTAGGATACATGATATTGAAGCTTTGGTTTCGCAACAAA
* * *
1277604 GGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTC
520 GGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGCGACAAACATGGATTC
* * * *
1277669 TAGTAATGA-TCTTCATTCTTTTTGTGATATGGCA-TATGAACACATTCTC
585 TACTAATGATTC-TCATTCTTTTTGTGATTTGGCACTATAAACACATTTTC
*
1277718 CGCATTAGGATA
1 CTCATTAGGATA
1277730 ATTGACATTG
Statistics
Matches: 1739, Mismatches: 152, Indels: 36
0.90 0.08 0.02
Matches are distributed among these distances:
626 56 0.03
627 115 0.07
630 5 0.00
631 219 0.13
632 186 0.11
633 125 0.07
634 606 0.35
635 418 0.24
636 9 0.01
ACGTcount: A:0.29, C:0.20, G:0.15, T:0.36
Consensus pattern (634 bp):
CTCATTAGGATACATGATATTAATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTGTT
GTAAAGTCTAAGTTCGTACCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATTCTTTT
TGTGATATGGCACTATAAACACATTCTCCGCATTAGGATAATTGACATTGATGTTTTTCTTTTGC
ATGAAAACCTTTTCTTTGCCCAATTATCCTTAAAATCAAAGTTCTTCCCTTGAATAAGACAAGCA
TCGATTCTCCTAACAGTCTCCATTTTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTCTTTAG
GATGCACGACATTGATGCTTTGGGGTCACAAGGAAAGCTTTTCTTTCTGCCGTTTTTGATAGAAT
CCAAATTTTTCTCTTAAATAAGACTAACATGAATACTCACACTAATCCCCATTCCTTTCAGGGTT
AGGCACCACAAACATAGTCTTCTCGTTAGGATACATGATATTGAAGCTTTGGTTTCGCAACAAAG
GCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGCGACAAACATGGATTCT
ACTAATGATTCTCATTCTTTTTGTGATTTGGCACTATAAACACATTTTC
Found at i:1282895 original size:791 final size:787
Alignment explanation
Indices: 1281507--1283251 Score: 2525
Period size: 791 Copynumber: 2.2 Consensus size: 787
1281497 TATAGTCTTC
* * * *
1281507 TCATTAGGATACATCATACTGAAGCATTGGTTTTGCAACAAAGGCTTTCTTCCCACCAATT-TT-
1 TCATTAGGATACATGATA-TTAAGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTGTTG
** * *
1281570 TATAAGTCTAAGTTCATGCCTCAAATGTA-ACAAACATGGATTCTACTGATGATTTTCATTCTTT
65 TA-AAGTCTAAGTTTGTGCCTCAAATG-AGACAAATATGGATTCTACTAATGATTTTCATTCTTT
* * * ** * *
1281634 CTGTGATTTGGCACAATAAACGCATTTTTGTCATTAGGATGCATGATATTATTGCTTTGGTTTCG
128 TTGTGATTTGGCACTATAAACACATTTTCCTCATTAGGATACATGATATTAATGCTTTGGTTTCG
*
1281699 CAACAAAAGCTTTCTTCCAACCAATTGTTGTAAAGTTTAAGTTCGTACCTCAAATGAGACAAATA
193 CAACAAAAGCTTTCTTCCAACCAATTGTTGTAAAGTTTAAGTTCGTACCTCAAATGAGAAAAATA
*
1281764 TGGATTTTAGTAATGATGTTCATTTTTTTGTGATATGGCACTATAAACACATTCTACGCATTAGG
258 TGGATTCTAGTAATGATGTTCATTTTTTTGTGATATGGCACTATAAACACATTCTACGCATTAGG
* * * * *
1281829 ATTATTGACATTGATGTTTTTCTTTTACGTGAAAACCTTTTCTTTGCCCAATTATCTTTAAAATC
323 ATAATTGACATTGAAGTTTTTCTTTGACATGAAAACCTTTTCTTTGCCCAATTATCCTTAAAATC
*
1281894 AAAGTTCTTCCCTTGAATAAGACAAGCATCGATTCTGCTAACAGTCTCCATTTTTTTCAAGATTG
388 AAAGTTCTTCCCTTGAAAAAGACAAGCATCGATTCTGCTAACAGTCTCCATTTTTTTCAAGATTG
* * ** *
1281959 GGAAGCCAAAACACATTACCTTCTTTAGGATGCATGACATTGATGCTTTGTGGTCCCAAGAAAAG
453 AGAAGCCAAAACACATTACCTTCTTTAGGATGCACGACATTGATGCTTTAAGGTCACAAGAAAAG
* *
1282024 CTTTTCTTCCCATCATTTTTGACAGAATCCAAGTTTGTCTCTTAAAAAAGACTAACATGAACACT
518 CTTTTCTTCCCACCATTTTTGACAGAATCCAAGTTTGTCTCTTAAAAAAGACTAACAGGAACACT
* * * * * *
1282089 CACACTAAGCCCCATTCTTTTCAGGGTTAGGTACCATAAATATTGTCTTCTCATTAGGACCCATG
583 CACACTAAGCCCCATTCTTTTCAGAGTTAGGCACCACAAACATAGTCTTCT--TT-GGACACATG
* * * * *
1282154 ATACTGAAGCTTTGGTTTTGCAACAAAGGATTTCTTCCCACCAGTTTTT-TTAAGTCTAAGTTCA
645 ATACTGAAGCTTTGGTTTCGCAACAAAAGATTTCTTCCCACCAATTTTTGTAAAGCCTAAGTTCA
* *
1282218 TGCCTCAAATGCGACAAACATGGATTCTACTGATGATTTTCATTCTTTTTGTGATTTGGTACAAT
710 TGCCTCAAATGCGACAAACATGGATTCTACTAATGATTTTCATTCTTTTTGTGATTTGGCACAAT
1282283 AAACAAATTTTCA
775 AAACAAATTTTCA
* * *
1282296 TCATTAGGATACATGATATTAATACTTTGGTTTCGCAACAAAGGCTTTCTTTCAACCAATTGTTG
1 TCATTAGGATACATGATATTAA-GCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTGTTG
* * * *
1282361 TAAAGTATTAGTTTGTCCCTCAAATGAGACAAATATGGATTCTACTAACGATTTTCATTCTTTTT
65 TAAAGTCTAAGTTTGTGCCTCAAATGAGACAAATATGGATTCTACTAATGATTTTCATTCTTTTT
* * *
1282426 ATGATTTGGCACTATAAACACATTTTCCT-ATTTAGGATATATGATATTAATGCTTTGGTTTTGC
130 GTGATTTGGCACTATAAACACATTTTCCTCA-TTAGGATACATGATATTAATGCTTTGGTTTCGC
* * *
1282490 AACAAAGGCTTTCTTCCCACCAATTGTTGTAAAGTTTAAGTTCGTGCCTCAAATGAGAAAAATAT
194 AACAAAAGCTTTCTTCCAACCAATTGTTGTAAAGTTTAAGTTCGTACCTCAAATGAGAAAAATAT
* *
1282555 GGATTCTAGTAATGATTTTCATTCTTTTTGTGATATGGCACTATAAACACATTCTCCGCATTAGG
259 GGATTCTAGTAATGATGTTCATT-TTTTTGTGATATGGCACTATAAACACATTCTACGCATTAGG
* *
1282620 ATAATTGGCATTGAAGCTTTTT-TTTGGCATGAAAACCTTTTCTTTGCCCAATTATCCTTAAAAT
323 ATAATTGACATTGAAG-TTTTTCTTTGACATGAAAACCTTTTCTTTGCCCAATTATCCTTAAAAT
*
1282684 CAAAGTTCTTCCCTTGAAAAAGACAAGCATCGATTCT-CTTAATAGTCTCCATTTTTTTCAAGAT
387 CAAAGTTCTTCCCTTGAAAAAGACAAGCATCGATTCTGC-TAACAGTCTCCATTTTTTTCAAGAT
*
1282748 TGAGAAGCCAAAACACATTGCCTTCTTTAGGATGCACGACATTGATGCTTTAAGGTCACAAGAAA
451 TGAGAAGCCAAAACACATTACCTTCTTTAGGATGCACGACATTGATGCTTTAAGGTCACAAGAAA
* * * * * * * *
1282813 AGCTTTTCTTCCCGCCGTTTTTGATAGAATCTAGGTTTTTCTCTTAAATAAGACTAACAGGAATA
516 AGCTTTTCTTCCCACCATTTTTGACAGAATCCAAGTTTGTCTCTTAAAAAAGACTAACAGGAACA
* * *
1282878 CTCACACTAATCCCCATTCTTTTCAGAGTTAGGCACCACAAACATAGTCTTGTTTGGATACATGA
581 CTCACACTAAGCCCCATTCTTTTCAGAGTTAGGCACCACAAACATAGTCTTCTTTGGACACATGA
* *
1282943 TATTGAAGCTTTGGTTTCGCAACAAAAGCTTTCTTCCCACCAATTTTTGTAAAGCCTAAGTTCAT
646 TACTGAAGCTTTGGTTTCGCAACAAAAGATTTCTTCCCACCAATTTTTGTAAAGCCTAAGTTCAT
* **
1283008 GCCTCAAATGTGACAAACATGGATTCTACTAATGATTTTCATTCTTTTTGTGATTTGGCACTGTA
711 GCCTCAAATGCGACAAACATGGATTCTACTAATGATTTTCATTCTTTTTGTGATTTGGCACAATA
* *
1283073 AACACATTTTCC
776 AACAAATTTTCA
* * *
1283085 TCATTAGGATATATGATATTAACGCTTTGGTTTCACAGCAAAGGCTTTCTTCCCACCAATTGTTG
1 TCATTAGGATACATGATATTAA-GCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTGTTG
* **
1283150 TAAAGTCTAAGTTTGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCGTCATT-TTTTT
65 TAAAGTCTAAGTTTGTGCCTCAAATGAGACAAATATGGATTCTACTAATGATTTTCATTCTTTTT
* * *
1283214 GTGATATGGCACTATAAACACATTCTCCGCATTAGGAT
130 GTGATTTGGCACTATAAACACATTTTCCTCATTAGGAT
1283252 TATTGACATT
Statistics
Matches: 848, Mismatches: 98, Indels: 21
0.88 0.10 0.02
Matches are distributed among these distances:
788 91 0.11
789 249 0.29
790 190 0.22
791 313 0.37
792 5 0.01
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.37
Consensus pattern (787 bp):
TCATTAGGATACATGATATTAAGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTGTTGT
AAAGTCTAAGTTTGTGCCTCAAATGAGACAAATATGGATTCTACTAATGATTTTCATTCTTTTTG
TGATTTGGCACTATAAACACATTTTCCTCATTAGGATACATGATATTAATGCTTTGGTTTCGCAA
CAAAAGCTTTCTTCCAACCAATTGTTGTAAAGTTTAAGTTCGTACCTCAAATGAGAAAAATATGG
ATTCTAGTAATGATGTTCATTTTTTTGTGATATGGCACTATAAACACATTCTACGCATTAGGATA
ATTGACATTGAAGTTTTTCTTTGACATGAAAACCTTTTCTTTGCCCAATTATCCTTAAAATCAAA
GTTCTTCCCTTGAAAAAGACAAGCATCGATTCTGCTAACAGTCTCCATTTTTTTCAAGATTGAGA
AGCCAAAACACATTACCTTCTTTAGGATGCACGACATTGATGCTTTAAGGTCACAAGAAAAGCTT
TTCTTCCCACCATTTTTGACAGAATCCAAGTTTGTCTCTTAAAAAAGACTAACAGGAACACTCAC
ACTAAGCCCCATTCTTTTCAGAGTTAGGCACCACAAACATAGTCTTCTTTGGACACATGATACTG
AAGCTTTGGTTTCGCAACAAAAGATTTCTTCCCACCAATTTTTGTAAAGCCTAAGTTCATGCCTC
AAATGCGACAAACATGGATTCTACTAATGATTTTCATTCTTTTTGTGATTTGGCACAATAAACAA
ATTTTCA
Found at i:1284929 original size:631 final size:634
Alignment explanation
Indices: 1283720--1289084 Score: 2449
Period size: 631 Copynumber: 8.5 Consensus size: 634
1283710 ATTTTCATCA
* * * * *
1283720 TTAGGATACATGATATT-AATACTTTGGTTTTGCAACAAAGGCTTTCTTTCAACCAATTGTTGTA
1 TTAGGATACATGATATTGAA-GCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTTTTGTA
* * * * * *
1283784 AAGTATTAGTTTGTCCCTCAAATGAGACAAATATGGATTCTACTAACGATTTTCATTCTTTTTAT
65 AAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTACTAATGATTTTCATTCTTTTTGT
* *
1283849 GTTTTGGCACTATAAACACATTTTCCTCT-TTAGGATATATGATATTAATGCTTTGGTTTTGCAA
130 GATTTGGCACTATAAACACATTTTCCT-TATTAGGATATATGATATTAACGCTTTGGTTTTGCAA
1283913 GAAAGGCTTTCTTCCCACCAATTGTTGTAAAGTTTAAGTTCGTGCCTCAAATGAGAAAAATATGG
194 GAAAGGCTTTCTTCCCACCAATTGTTGTAAAGTTTAAGTTCGTGCCTCAAATGAGAAAAATATGG
*
1283978 ATTCTAGTAATGATCTTCATTCTTTTTGTGATATGGCACTATAAACACATTCGCCGCATTAGGAT
259 ATTCTAGTAATGATCGTCATTCTTTTTGTGATATGGCACTATAAACACATTCGCCGCATTAGGAT
1284043 AATTGACATTGAAGCTTTTTTTTGGCATGAAAACCTTTTCTTTGCCCAATTATCCTTAAAATCAA
324 AATTGACATTGAAGCTTTTTTTTGGCATGAAAACCTTTTCTTTGCCCAATTATCCTTAAAATCAA
* * *
1284108 AGTTTTTCCCTTGAAAAAGACAAGCATCGATTCTCTTAATAGTCTCCATTTTTTTCAAGATTGAG
389 AGTTCTTCCCTTGAAAAAGACAAGCATCGATTCTCTTAACAGTCTCCACTTTTTTCAAGATTGAG
1284173 AAGACAAAACACATTGCCTTCTTTAGGATGCACGACATTGATGCTTTAGGGTCACAAGAAAAGCT
454 AAGACAAAACACATTGCCTTCTTTAGGATGCACGACATTGATGCTTTAGGGTCACAAGAAAAGCT
* * *
1284238 TTTCTTCTCACCATTTTTGATAGAATCTAGGTTTTTCTCTTAAATAAGACTAACATGAATACTCA
519 TTTCTTCTCACCATTTTTGATAGAATCCAAGTTTTTCTCTTAAATAAGACTAAAATGAATACTCA
* *
1284303 CACTAATCCCCATTCTTTTCAGGGTTAGGCACCACAAACATAGTC-T-T-G
584 CACTAATCCCCATTCCTTTCAGGGTTAGCCACCACAAACATAGTCTTCTCG
* *
1284351 TTTGGATACATGATATTGAAGCTTTGGTTTCGCAACAAAAGCTTTCTTCCCACCAATTTTTGTAA
1 TTAGGATACATGATATTGAAGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTTTTGTAA
* * * *
1284416 AGCCTAAGTTCATGCCTCAAATGTGACAAACATGGATTCTACTAATGATTTTCATTCTTTTTGTG
66 AGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTACTAATGATTTTCATTCTTTTTGTG
*
1284481 ATTTGGCACTGTAAACACATTTTCCTTATTAGGATATATGATATTAACGCTTTGG-TTT-CACAG
131 ATTTGGCACTATAAACACATTTTCCTTATTAGGATATATGATATTAACGCTTTGGTTTTGCA-AG
* *
1284544 CAAAGGCTTTCTTCCCACCAATTGTTGTAAAGTTTAAGTTTGTGCCTCAAATGAGACAAATATGG
195 -AAAGGCTTTCTTCCCACCAATTGTTGTAAAGTTTAAGTTCGTGCCTCAAATGAGAAAAATATGG
* *
1284609 ATTCTAGTAATGATCGTCATTTTTTTTGTGATATGGCACTATAAACACATTCTCCGCATTAGGAT
259 ATTCTAGTAATGATCGTCATTCTTTTTGTGATATGGCACTATAAACACATTCGCCGCATTAGGAT
* * *
1284674 TATTGACATTGATG-TTTTTCTTTTGCATGAAAACCTTTTCTTTGCCCAATTATCCTTAAAATCA
324 AATTGACATTGAAGCTTTTT-TTTGGCATGAAAACCTTTTCTTTGCCCAATTATCCTTAAAATCA
* * *
1284738 AAGTTCTTCCCTTGAATAAGTCAAGCATCGATTCTCTTAACAGTCTCCACTTTTTTCAAGATTGG
388 AAGTTCTTCCCTTGAAAAAGACAAGCATCGATTCTCTTAACAGTCTCCACTTTTTTCAAGATTGA
* * *
1284803 GAAGCCAAAACACATTGCCTTCTTTAGGATGCACGACATTGATGCTTTGGGGTCACAAGGAAAGC
453 GAAGACAAAACACATTGCCTTCTTTAGGATGCACGACATTGATGCTTTAGGGTCACAAGAAAAGC
* **
1284868 TTTTCTTTTTGCCATTTTTGATAGAATCCAAGTTTTTCTCTTAAATAAGACTAAAATGAATACTC
518 TTTTCTTCTCACCATTTTTGATAGAATCCAAGTTTTTCTCTTAAATAAGACTAAAATGAATACTC
*
1284933 ACACTAGTCCCCATTCCTTTCAGGGTTAGCCACCACAAACATAGTCTTCTCG
583 ACACTAATCCCCATTCCTTTCAGGGTTAGCCACCACAAACATAGTCTTCTCG
*
1284985 TTAGGATACATGATATTGAAGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTTTTCTAA
1 TTAGGATACATGATATTGAAGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTTTTGTAA
* *
1285050 AGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATTCTTTTTGTG
66 AGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTACTAATGATTTTCATTCTTTTTGTG
* * * ** * * ***
1285115 ATATGGCACTATGAACACATTCTCCGCATTAGGATAGT-TGACATTGA-TAATTGCG---TG--A
131 ATTTGGCACTATAAACACATTTTCCTTATTAGGATA-TATGATATTAACGCTTTG-GTTTTGCAA
* ** * * ** * * ** * * **
1285173 -AAA-CCTTTTCTTTGC-CCAATTATCCT-TAAAATCAAAGTTCTTCCCTTGAATAAGACAAGCA
194 GAAAGGC-TTTCTTCCCACCAATTGT--TGTAAAGTTTAAGTTCGTGCCTCAAATGAGAAAAATA
* ** * * * ** * * * *
1285234 TCGATTCTCCTAA-CAGTC-TCCTT-TTTTTTTCAAGATGGGGAAGCCA-AAGCACATT-GCCTT
256 TGGATTCTAGTAATGA-TCGTCATTCTTTTTGT---GATATGGCA-CTATAAACACATTCGCC-G
* ** * * **** ** * * * * *
1285294 CTTTAGGATGCTTGGCATTGATGCTTTGGGGTCACAAGGAAAGCTTTTCTTCCTG-CC-ATTTTT
315 CATTAGGATAATTGACATTGAAGCTTTTTTTTGGCATGAAAACCTTTTCTT--TGCCCAATTATC
** * * * * * * *
1285357 GATAGAATCCAAGTTTTTCTCTT-AAATAAGACTATCAT-GAATACTC--ACACTAGTC-CCA-T
378 CTTAAAATCAAAGTTCTTCCCTTGAAA-AAGACAAGCATCG-ATTCTCTTA-AC-AGTCTCCACT
* * ** * * * * * * * * * *
1285416 TCTTTC-AGCGTT-AGGTGCCATAA-ATATAGTCTTCTCATTAGGATACATC-ATACTGAAGCAT
439 TTTTTCAAG-ATTGAGAAGACAAAACACATTGCCTTCT--TTAGGATGCA-CGACATTGATGCTT
* ** * * * * * * * *
1285477 T-GGTTTGCAACAAAGGC-TTTCTTCCCACCAATTTTT-ATA-AGTCTAAGTTCATGC-CTCAAA
500 TAGGGTCACAAGAAAAGCTTTTCTTCTCACC-ATTTTTGATAGAATCCAAGTT-TTTCTCTTAAA
** * * * *** * * * * * * *
1285537 TGTGAC-AAACATGGATTCT-ACTGA-TGATTTTCATT-CTTTCTGTGATTTGGCACAATAAACG
563 TAAGACTAAA-ATGAATACTCAC--ACTAATCCCCATTCCTTTCAG-GGTTAGCCACCACAAACA
* * * * *
1285598 CATTTTTGTCA
624 TAGTCTTCTCG
* *
1285609 TTAGGATACATGATATT-AATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCAACCAATTGTTGTA
1 TTAGGATACATGATATTGAA-GCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTTTTGTA
* * * **
1285673 AAGTCTAAGTTCGTACCTCAAATGAGACAAATATGGATTTTAGTAATGATCATCATT-TTTTTGT
65 AAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTACTAATGATTTTCATTCTTTTTGT
* * ** * * * * ** **
1285737 GATATGGCACTATAAACACATTCTCCGCATTAGGAT-TATTGACATTGATGTTTTTCTTTTGCGT
130 GATTTGGCACTATAAACACATTTTCCTTATTAGGATATA-TGATATTAACGCTTTGGTTTTGCAA
** ** * * * ** * * * **
1285801 GAAAACCTTTTCTTTGC-CCAATTATCTTTAAAATCAAAGTTC-TTCC-CATGAATAAGACAAGC
194 GAAAGGC-TTTCTTCCCACCAATTGT-TGTAAAGTTTAAGTTCGTGCCTCA--AATGAGAAAAAT
* * ** * *
1285863 ATCGATTCT-GCTAA-CAGTC-TCCATT-TTTTTCAAGAT-TGGGAAGCCA-AAACACATT-GCC
255 ATGGATTCTAG-TAATGA-TCGT-CATTCTTTTT-GTGATAT-GGCA-CTATAAACACATTCGCC
* * * * * ** ** * * **
1285921 TTCTTTAGGATGCA-TGACATTGATGCTTTGTGGTCCCAAGAAAAGCTTTTC-TT-CCC-ATCGT
314 -GCATTAGGAT-AATTGACATTGAAGCTTTTTTTTGGCATGAAAACCTTTTCTTTGCCCAATTAT
** * * * * * * *
1285982 TTTTAACAAAATCCAAGTT-TGTCTCTTAAAAAAGACTAA-CAT-GA-ACACTCACACTAAG-CC
377 CCTT---AAAATCAAAGTTCT-TCCCTTGAAAAAGAC-AAGCATCGATTCTCTTA-AC--AGTCT
* ** * * * * ** * * *
1286042 CCA-TTCTTTTCAGGGCT-AGGAA-CCATAA-ATATTGTCTTCTCATTAGGACCCATGATACTGA
434 CCACTT-TTTTCAAGATTGA-GAAGACAAAACACATTGCCTTCT--TTAGGATGCACGACATTGA
* * ** * ** * * * * *
1286103 AGCTTT-GGTTTTGCAA-CAAAGGATTTCTTCCCACCAGTTTTT-ATA-AGTCTAAGTTCATGC-
495 TGCTTTAGG-GTCACAAGAAAAGCTTTTCTTCTCACCA-TTTTTGATAGAATCCAAGTT-TTTCT
* ** * * * *** ** * * * *
1286163 CTCAAATGCGAC-AAACATGGATTCT-ACTGA-TGATTTTCATT-CTTTTTGTGATTTGGCACAA
557 CTTAAATAAGACTAAA-ATGAATACTCAC--ACTAATCCCCATTCCTTTCAG-GGTTAGCCACCA
* * * * ** *
1286224 TAAACAAATTTTTGACA
618 CAAACATAGTCTTCTCG
* * *
1286241 TTAGGATACATGATATT-AATGCTTTAGTTTCGCAACAAAGGCTTTCTTCCAACCAATTGTTGTA
1 TTAGGATACATGATATTGAA-GCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTTTTGTA
* ** *
1286305 AAGTCTAAGTTTGTGCCTCAAATGAGACAAATATGGATTCTAGC-AATGATCGTCATTTTTTTTG
65 AAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTA-CTAATGATTTTCATTCTTTTTG
* * ** * * * * **
1286369 TGATATGGCACTATAAACACATTCTCCGCATTAGGAT-TATTGACATTGATGTTTTTCTTTTGCA
129 TGATTTGGCACTATAAACACATTTTCCTTATTAGGATATA-TGATATTAACGCTTTGGTTTTGCA
* ** ** * * ** * * ** * * **
1286433 TGAAAACCTTTTCTTTGC-CCAATTATCCT-TAAAATGAAAGTTCTTCCCTTGAATAAGACAAGC
193 AGAAAGGC-TTTCTTCCCACCAATTGT--TGTAAAGTTTAAGTTCGTGCCTCAAATGAGAAAAAT
* ** * ** * *
1286496 ATCGATTCTCCTAA-CAGTC-TCCATT-TTTTTCAAGAT-TGGGAAGCCA-AAACACATT-GCCT
255 ATGGATTCTAGTAATGA-TCGT-CATTCTTTTT-GTGATAT-GGCA-CTATAAACACATTCGCC-
* * * * ** ** * *
1286555 TCTTTAGGATGCA-CGACATT---GCTGCTTTGGGGTCATAAGGAAAGCTTTTCTTT-CTGCC-A
314 GCATTAGGAT-AATTGACATTGAAGCTTTTTTTTGG-CAT--GAAAACCTTTTCTTTGC--CCAA
* *** * * * * * ** * *
1286614 TTTTTGATAGAATCCAAGTTTTTCTCTT-AAATAAGACTAA-CAT-GAATACTC-GCACTAATCC
373 TTATCCTTAAAATCAAAGTTCTTCCCTTGAAA-AAGAC-AAGCATCG-ATTCTCTTAAC-AGTCT
* * ** * * * * *
1286675 CCA-TTCCTTTCAAGGTT-AG--GCACCCCAA-ACATAGTCTTCTCGTTAGGATACATGATATTG
434 CCACTT-TTTTCAAGATTGAGAAG-A-CAAAACACATTGCCTTCT--TTAGGATGCACGACATTG
* ** ** * * * * ** *
1286735 AAGCTTTAGTTTCGTAACAAAGGC-TTTCTTCCCACCAATTTTTG-TA-AAGTCTAAGTCCGTGC
494 ATGCTTTAGGGTCACAAGAAAAGCTTTTCTTCTCACC-ATTTTTGATAGAA-TCCAAGT-TTTTC
* * * * * * * ** ** * * * *
1286797 -CTCAAATGAGAC-AAATATGGATTCT-AGTAATGATCTTCATT-CTTTTTGTGATATGGCACTA
556 TCTTAAATAAGACTAAA-ATGAATACTCA-CACTAATCCCCATTCCTTTCAGGGTTA-GCCACCA
** * * * * *
1286858 TGAACACATTCTCCGCA
618 CAAACATAGTCTTCTCG
* * * ** * ** ** ** * *
1286875 TTAGGA-AAATTGACATTGATA-TTTTTCTTTTGCATGAAAACCTTTTCTTTGC-CCAATTATCG
1 TTAGGATACA-TGATATTGA-AGCTTTGGTTTCGCAACAAAGGC-TTTCTTCCCACCAATTTTTG
* * * * ** * ** * * * * * *
1286937 TTAAAATCAAAGTTCTTCCCTTGAATAAGACAAGCATCGATTCTTCTAAT-AGTCTCCTTTTTTT
63 -TAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTACTAATGATTTTCATTCTTTT
* * * * * * * ** ** * * *
1287001 TTTCAAGATTGGGAAGCCA-AAGCACA-TTGCCTTCTTTAGGATGCATGGCATTGATGCTTTGGG
127 TGT---GATTTGGCA-CTATAAACACATTTTCCTT-ATTAGGATATATGATATTAACGCTTTGGT
* ** *** * ** * * * *
1287064 GTCACAAGGAAA-GCTTTTCTTCTTGCC-ATTTTTGATAGAA-TCCAAGTT-TTTCTCTTAAATA
187 TTTGCAA-GAAAGGC-TTTCTTCCCACCAATTGTTG-TA-AAGTTTAAGTTCGTGC-CTCAAATG
** * * * * ** * * * ** * * *
1287125 AG-ACTATCATGAATACTCA-CACT-AGTCCCCATTCTTTTCAGCG-TAAGGTGCCATAAATATA
247 AGAAAAAT-ATGGATTCT-AGTAATGA-TCGTCATTCTTTT-TGTGATATGGCACTATAAACACA
* ** * * * * ** ** **
1287186 GTCTTCTCATTAGGATACA-TCATACTGAAGCATTGGTTTT-GCAACAAAGGC-TTTCTTCT-CA
308 TTCGCCGCATTAGGATA-ATTGACATTGAAGC-TTTTTTTTGGCATGAAAACCTTTTCTT-TGC-
* * * * * ** * * * **
1287247 CCAATT-T--TTATAAGTCTAAGTTCATGCC-TCAAATGTGACAAACATGGATTCTACTGATGA-
369 CCAATTATCCTTA-AAATCAAAGTTCTTCCCTTGAAA-AAGACAAGCATCGATTCT-CTTAACAG
* * * ** * * * * * * * *
1287307 TTTTCA-TTCTTTCTGTGATTTG-GCACA-ATAAACGCATTTTCC-TCATTAGGATACATGATAT
431 TCTCCACTTTTTTC-AAGA-TTGAGAAGACA-AAACACA-TTGCCTTCTTTAGGATGCACGACAT
* * * * * * * *
1287368 TAATGCTTT-GGTTTCGCAACAAAGGC-TTTCTTC-CAACAAATTGTTG-TA-AAGTCTAAGTTC
492 TGATGCTTTAGG-GTCACAAGAAAAGCTTTTCTTCTC-AC-CATTTTTGATAGAA-TCCAAGTT-
* * * * * * * *** ** * * *
1287428 GTGC-CTCAAATGAA-AC-AAATATGGATTC-CACTAATGATATTCATT-CTTTTTGTGATTTGG
552 TTTCTCTTAAAT-AAGACTAAA-ATGAATACTCAC-ACTAATCCCCATTCCTTTCAG-GGTTAGC
* * * * *
1287488 CACTATAAA-A-ACTTTTTCCTCT
613 CACCACAAACATA-GTCTT-CTCG
** ** * *
1287510 TTAGGATACATGATATT-AATGCTTTGGTTTCATAACAAAGGCTTTCTTTACACCAACTGTTGTA
1 TTAGGATACATGATATTGAA-GCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTTTTGTA
*
1287574 AAGTCTAAGTTCATGCCTCAAATGAGACAAATATGGATTCTACTAATGATTTTCATTCTTTTTGT
65 AAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTACTAATGATTTTCATTCTTTTTGT
* * * * * * *
1287639 GATTCGGCACTATAAAAACATTTTCCACT-TTAGGATACATGATATTAATGCTTTGGTTTCGTAA
130 GATTTGGCACTATAAACACATTTTCC-TTATTAGGATATATGATATTAACGCTTTGGTTTTGCAA
*** * **
1287703 CG-AAGGCTTTCTT-CCACCAA--ACAGTAAAGTCTAAGTTCGTGCCTCAAATGAGACGAATATG
194 -GAAAGGCTTTCTTCCCACCAATTGTTGTAAAGTTTAAGTTCGTGCCTCAAATGAGAAAAATATG
* * * * *
1287764 GATTCCAGTAATGATCTTCATTTTTTTTGTGATAAGGCACTATAAACACATTCTCCGCATTAGGA
258 GATTCTAGTAATGATCGTCATTCTTTTTGTGATATGGCACTATAAACACATTCGCCGCATTAGGA
* * * ** *
1287829 TAATTGACATTGATG-TTTTTCTTTCGCATTAAAGTCTTTTCTTTGCCTAATTATCCTTAAAATC
323 TAATTGACATTGAAGCTTTTT-TTTGGCATGAAAACCTTTTCTTTGCCCAATTATCCTTAAAATC
* * * * * ***
1287893 AAAGTTCATCCCCTGAATAAGACAAGCATCGATTCTCGTAATAGTCTCCACACCTTTCAAGATTG
387 AAAGTTCTTCCCTTGAAAAAGACAAGCATCGATTCTCTTAACAGTCTCCACTTTTTTCAAGATTG
* * * * * * *
1287958 GGAAGCCAAAACACATTGCCTTCATTGGGATACACGACATGGATGCTTT-GGTGTCTCAAGAAAA
452 AGAAGACAAAACACATTGCCTTCTTTAGGATGCACGACATTGATGCTTTAGG-GTCACAAGAAAA
* ** *
1288022 GCTTTTCTTCTCGCCATTTTTGATAGAATAAAAGTTTATCTCTTAAATAAGA--AAGACATGAAT
516 GCTTTTCTTCTCACCATTTTTGATAGAATCCAAGTTTTTCTCTTAAATAAGACTAA-A-ATGAAT
* * * * * * * * *
1288085 ACCCACCCTAATCCCCATTCCTTTTAGGATTAGGCTCCATAAACATAGTTTTCTCA
579 ACTCACACTAATCCCCATTCCTTTCAGGGTTAGCCACCACAAACATAGTCTTCTCG
* * * * *
1288141 TTAGGATACATGATATTGAAGCTTTGGTTTTGGAACAAAGGTTTTCTTCCCACCAGTTGTTGTAA
1 TTAGGATACATGATATTGAAGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTTTTGTAA
* * * *
1288206 AGTCTAAGTTCATGCCTTAAATGAGACAAATATGAATTCTACTAGTGATTTTCATTCTTTTTGTG
66 AGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTACTAATGATTTTCATTCTTTTTGTG
* * *
1288271 ATTTGGCACTATAAACACAATTTCCTCATTAGGATATATGATATTAACGCTTTGGTTTTGCAACA
131 ATTTGGCACTATAAACACATTTTCCTTATTAGGATATATGATATTAACGCTTTGGTTTTGCAAGA
* * **
1288336 AAGGCTTTCTTCCCACCAATTGTTGTAAAGTCTACA-TTCGTGCCTCAAGTGAGCCAAATATGGA
196 AAGGCTTTCTTCCCACCAATTGTTGTAAAGTTTA-AGTTCGTGCCTCAAATGAGAAAAATATGGA
* * * * *
1288400 TCCTTGTAATGATCTTCATTCCTTTTGTGATATGGCACTATAAACACATTCTCCGCATTAGGATA
260 TTCTAGTAATGATCGTCATTCTTTTTGTGATATGGCACTATAAACACATTCGCCGCATTAGGATA
* * *
1288465 ATTGACATTGATG-TTTTTCTTTTGCATGAAAACATTTTCTTTGCCCAATTATCCTTAAAATCAA
325 ATTGACATTGAAGCTTTTT-TTTGGCATGAAAACCTTTTCTTTGCCCAATTATCCTTAAAATCAA
* * * * * *
1288529 AGTTCTTCCCTTGAATAAGACAAGCATCGATTCTCCTAGCAGTCTCCATTTTTTTTCAAAATTGG
389 AGTTCTTCCCTTGAAAAAGACAAGCATCGATTCTCTTAACAGTCTCCA-CTTTTTTCAAGATTGA
* * * * *
1288594 GAAGCCAAAACACTTTGCCTTCTTTAGAATGCACGACATTGATGCTTT-GGCGTCAGAAGGAAAG
453 GAAGACAAAACACATTGCCTTCTTTAGGATGCACGACATTGATGCTTTAGG-GTCACAAGAAAAG
* ** * *
1288658 CTTTTCTTCCCGTCGTTTTTGATAGAATCCAAGTTTTTCTCTTAAATAAGACTAACATGAATACT
517 CTTTTCTTCTCACCATTTTTGATAGAATCCAAGTTTTTCTCTTAAATAAGACTAAAATGAATACT
* * * *
1288723 CACACTAATCCCCATTCTTTTCATGGTTAGGCACCACAAACATAGTCTTCTCA
582 CACACTAATCCCCATTCCTTTCAGGGTTAGCCACCACAAACATAGTCTTCTCG
*
1288776 TTAGGATACATGATATTGAAGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAGTTTTTGTAA
1 TTAGGATACATGATATTGAAGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTTTTGTAA
* * * * * * **
1288841 AGTTTAAGTTCATACCCCAAATGCGACAAACATGGATTCTACCGATGATTTTCATTCTTTTTGTG
66 AGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTACTAATGATTTTCATTCTTTTTGTG
* * * * * *
1288906 ATTTGGCACAATAAACACATTTTCCTCATTAGGTTATATGATATTAATGCTTTGGTTTCGCAACA
131 ATTTGGCACTATAAACACATTTTCCTTATTAGGATATATGATATTAACGCTTTGGTTTTGCAAGA
* * * * * * * *
1288971 AAGGCTTTCTTCCAACAAATTATTGTAAAGTCTAAGTCCATGCCTCTAATGAGACAAATATGGAT
196 AAGGCTTTCTTCCCACCAATTGTTGTAAAGTTTAAGTTCGTGCCTCAAATGAGAAAAATATGGAT
* ** * * *
1289036 TGC-ACTAATGATTTTCATTCTTTTTGTGATTTGGCACTGTAAAAACATT
261 T-CTAGTAATGATCGTCATTCTTTTTGTGATATGGCACTATAAACACATT
1289085 TTCCTCTTTA
Statistics
Matches: 3824, Mismatches: 696, Indels: 424
0.77 0.14 0.09
Matches are distributed among these distances:
621 1 0.00
623 64 0.02
624 162 0.04
625 23 0.01
626 44 0.01
627 52 0.01
628 143 0.04
629 218 0.06
630 190 0.05
631 882 0.23
632 308 0.08
633 331 0.09
634 549 0.14
635 673 0.18
636 39 0.01
637 118 0.03
638 19 0.00
639 2 0.00
640 3 0.00
641 3 0.00
ACGTcount: A:0.29, C:0.19, G:0.15, T:0.36
Consensus pattern (634 bp):
TTAGGATACATGATATTGAAGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTTTTGTAA
AGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTACTAATGATTTTCATTCTTTTTGTG
ATTTGGCACTATAAACACATTTTCCTTATTAGGATATATGATATTAACGCTTTGGTTTTGCAAGA
AAGGCTTTCTTCCCACCAATTGTTGTAAAGTTTAAGTTCGTGCCTCAAATGAGAAAAATATGGAT
TCTAGTAATGATCGTCATTCTTTTTGTGATATGGCACTATAAACACATTCGCCGCATTAGGATAA
TTGACATTGAAGCTTTTTTTTGGCATGAAAACCTTTTCTTTGCCCAATTATCCTTAAAATCAAAG
TTCTTCCCTTGAAAAAGACAAGCATCGATTCTCTTAACAGTCTCCACTTTTTTCAAGATTGAGAA
GACAAAACACATTGCCTTCTTTAGGATGCACGACATTGATGCTTTAGGGTCACAAGAAAAGCTTT
TCTTCTCACCATTTTTGATAGAATCCAAGTTTTTCTCTTAAATAAGACTAAAATGAATACTCACA
CTAATCCCCATTCCTTTCAGGGTTAGCCACCACAAACATAGTCTTCTCG
Found at i:1288280 original size:789 final size:788
Alignment explanation
Indices: 1287343--1290686 Score: 2613
Period size: 789 Copynumber: 4.2 Consensus size: 788
1287333 AATAAACGCA
* * *
1287343 TTTTCCTCATTAGGATACATGATATT-AATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCAACAA
1 TTTT-CTCATTAGGATACATGATATTGAA-GCTTTGGTTTTGCAACAAAGGCTTTCTTCCCACCA
* * * *
1287407 ATTGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAAACAAATATGGATTCCACTAATGATATTCAT
64 ATTGTTGTAAAGTCTAAGTTCATGCCTTAAATGAGACAAATATGGATTCCACTAATGATTTTCAT
*
1287472 TCTTTTTGTGATTTGGCACTATAAAAACTTTTTCCTCTTTAGGATACATGATATTAATGCTTTGG
129 TCTTTTTGTGATTTGGCACTATAAAAACATTTTCCTCTTTAGGATACATGATATTAATGCTTTGG
** * *
1287537 TTTCATAACAAAGGCTTTCTTTACACCAACTGTTGTAAAGTCTAAGTTCATGCCTCAAATGAGAC
194 TTTCATAACAAAGGCTTTCTTCCCACCAATTGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGAC
*
1287602 AAATATGGATTCTACTAATGATTTTCATTCTTTTTGTGATTCGGCACTATAAAAACATTTTCCAC
259 AAATATGGATTCTACTAATGATTTTCATTCTTTTTGTGATT-GGCACTATAAAAACATTTTCCTC
*
1287667 TTTAGGATACATGATATTAATGCTTTGGTTTCGTAACGAAGGCTTTCTT-CCACCAA-ACAGTAA
323 TTTAGGATACATGATATTAATGCTTTGGTTTCGTAACGAAGGCTTTCTTCCCACCAATACTGTAA
* * *
1287730 AGTCTAAGTTCGTGCCTCAAATGAGACGAATATGGATTCCAGTAATGATCTTCATTTTTTTTGTG
388 AGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCCACTAATGATCTTCATTCTTTTTGTG
* * * *
1287795 ATAAGGCACTATAAACACATTCTCCGCATTAGGATAATTGACATTGATGTTTTTCTTTCGCATTA
453 ATAAGGCACTATAAAAACATTCTCCGCATTAGGATAA-TGACATTGATGCTTTGCTTTCGCATGA
* * *
1287860 AAGTCTTTTCTTTGCCTAATTATCCTTAAAATCAAAGTTCATCCCCTGAATAAGACAAGCATCGA
517 AAGTCTTTTCTTTCCCCAATTATCCTTAAAATCAAAGTTCATCCCCTAAATAAGACAAGCATCGA
* * *
1287925 TTCTCGTAATAGTCTCCACACCTTTCAAGATTGGGAAGCCAAAACACATTGCCTTCATTGGGATA
582 TTCTCGTAATAGTCTCCACACTTTTCAAGATTAGGAA-CCAAAACACATTGCCTTCATTAGGATA
* *
1287990 CACGACATGGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCTCGCCATTTTTGATAGAATAAAA
646 CACGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTCTCGCCATTTTTGATAGAATAAAA
* * **
1288055 GTTTATCTCTTAAATAAGA-AAGACATGAATACCCACCCTAATCCCCATTCCTTTTAGGATTAGG
711 GTTCATCTCCTAAATAAGACAAGACATGAATACCCACAATAATCCCCATT-CTTTTAGGATTAGG
*
1288119 CTCCATAAACATAG
775 CACCATAAACATAG
* * *
1288133 TTTTCTCATTAGGATACATGATATTGAAGCTTTGGTTTTGGAACAAAGGTTTTCTTCCCACCAGT
1 TTTTCTCATTAGGATACATGATATTGAAGCTTTGGTTTTGCAACAAAGGCTTTCTTCCCACCAAT
* * *
1288198 TGTTGTAAAGTCTAAGTTCATGCCTTAAATGAGACAAATATGAATTCTACTAGTGATTTTCATTC
66 TGTTGTAAAGTCTAAGTTCATGCCTTAAATGAGACAAATATGGATTCCACTAATGATTTTCATTC
* * * * *
1288263 TTTTTGTGATTTGGCACTATAAACACAATTTCCTCATTAGGATATATGATATTAACGCTTTGGTT
131 TTTTTGTGATTTGGCACTATAAAAACATTTTCCTCTTTAGGATACATGATATTAATGCTTTGGTT
*** * *
1288328 TTGCAACAAAGGCTTTCTTCCCACCAATTGTTGTAAAGTCTACA-TTCGTGCCTCAAGTGAGCCA
196 TCATAACAAAGGCTTTCTTCCCACCAATTGTTGTAAAGTCTA-AGTTCGTGCCTCAAATGAGACA
* ** * * * * * *
1288392 AATATGGATCCTTGTAATGATCTTCATTCCTTTTGTGATATGGCACTATAAACACATTCTCCGCA
260 AATATGGATTCTACTAATGATTTTCATTCTTTTTGTGAT-TGGCACTATAAAAACATTTTCCTCT
* * * ** * * * ** **
1288457 TTAGGATA-ATTGACATTGATGTTTTTCTTTTG-CATGAAAACATTTTCTTTGC-CCAATTATCC
324 TTAGGATACA-TGATATTAATGCTTTGGTTTCGTAACGAAGGC--TTTCTTCCCACCAA-TA--C
* * * * ** * ** * *
1288519 T-TAAAATCAAAGTTCTTCCCTTGAATAAGACAAGCATCGATTCTC-CT-A-GCAGTCTCCATT-
383 TGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTC-CACTAATG-A-TCTTCATTC
* * * ** * * * * *
1288579 TTTTT-TCAAAATTGGGA--AGCCAAAACACTT-TGCCTTCTTTAGAATGCACGACATTGATGCT
445 TTTTTGTGATAA--GGCACTA-TAAAAACA-TTCT-CC-GCATTAGGAT-AATGACATTGATGCT
* * * * * *** * * ** * *
1288640 TTGGC-GTCAGAAGGAAAG-CTTTTC-TTCCCGTC-GTTTTTGATAGAATCCAAGTTTTTCTCTT
503 TT-GCTTTC-GCATGAAAGTCTTTTCTTTCCC--CAATTATCCTTAAAATCAAAGTTCATCCCCT
* ** * * * ** * * * *
1288701 AAATAAGACTAA-CAT-GAATACTCACACTAATCCCCATTCTTTTCATGGTTAGGCACCACAA-A
564 AAATAAGAC-AAGCATCG-ATTCTCGTAATAGTCTCCACACTTTTCAAGATTAGGAACCAAAACA
* * * * * * * * *
1288763 CATAGTCTTCTCATTAGGATACATGATATTGAAGCTTTGGTTTCGCAACAAAGGC-TTTCTTCCC
627 CATTG-CCT-TCATTAGGATACACGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTCTC
* ** * ** * * * *
1288827 ACCAGTTTTTG-TA-AAGTTTAAGTTCATAC-CCCAAATGCGACAA-ACATGGAT-TCTACCGAT
690 GCCA-TTTTTGATAGAA-TAAAAGTTCAT-CTCCTAAATAAGACAAGACATGAATACCCA-CAAT
* *** * * * *
1288887 GATTTTCATTCTTTTTGTGATTTGGCACAATAAACACA-
751 AATCCCCATTCTTTTAG-GATTAGGCACCATAAACATAG
* * * * *
1288925 TTTTCCTCATTAGGTTATATGATATT-AATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCAACAA
1 TTTT-CTCATTAGGATACATGATATTGAA-GCTTTGGTTTTGCAACAAAGGCTTTCTTCCCACCA
* * *
1288989 ATTATTGTAAAGTCTAAGTCCATGCCTCT-AATGAGACAAATATGGATTGCACTAATGATTTTCA
64 ATTGTTGTAAAGTCTAAGTTCATGCCT-TAAATGAGACAAATATGGATTCCACTAATGATTTTCA
*
1289053 TTCTTTTTGTGATTTGGCACTGTAAAAACATTTTCCTCTTTAGGATACATGATATTAATGCTTTG
128 TTCTTTTTGTGATTTGGCACTATAAAAACATTTTCCTCTTTAGGATACATGATATTAATGCTTTG
* * *
1289118 GTTTCATGACAAAGGCTTTCTTCCAACCAATTGTTGTAAAGTCTAAGTTCGTACCTCAAATGAGA
193 GTTTCATAACAAAGGCTTTCTTCCCACCAATTGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGA
* *
1289183 CAAATATGGATTGC-ACTAATGATTTTCATTCTTTTTGTGATTTCGCACTATAAAAACATTTTCT
258 CAAATATGGATT-CTACTAATGATTTTCATTCTTTTTGTGA-TTGGCACTATAAAAACATTTTCC
* * * *
1289247 TCTTTAGGATACCTGATATAAATGCTTTGGTTTCATAAC-AATGGCTTTCTTCCCACCAATTATT
321 TCTTTAGGATACATGATATTAATGCTTTGGTTTCGTAACGAA-GGCTTTCTTCCCACCAA-TACT
* * *
1289311 GTAAAGTCTACGTTCGTGCCTCAAATGAGACAAATATGG---CTACTAATGATTTTCATTCTTTT
384 GTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCCACTAATGATCTTCATTCTTTT
** * * * * * * * * * *
1289373 TGTGATTCGGCACTATAAAAACATTTTACTCTTTAGGATACAAGATATTAAAGCTTTGGTTTCGT
449 TGTGATAAGGCACTATAAAAACATTCTCCGCATTAGGATA-ATGACATTGATGCTTTGCTTTCGC
** * * * * * * * *
1289438 AACAAAGGC-TTTCTTCCCACCAATTGT--TGTAAAGTCTAAGTTCGT-GCCTCAAATGAGACAA
513 ATGAAAGTCTTTTCTTTCC-CCAATTATCCT-TAAAATCAAAGTTCATCCCCT-AAATAAGACAA
** ** * * *** *** * * * * **
1289499 ATATTAATTCTAGTAAT-GATCTTCATTTTTTTTTGTGATAAGGCACTATAAACAAATT-CTCCA
575 GCATCGATTCTCGTAATAG-TCTCCA-CACTTTTCAAGATTAGGAACCA-AAACACATTGC-CTT
* * * ** * * ** *
1289562 CATTAGGATA-ATTGACATCGATGTTTTTCTTTTGC-ATTAAAGTCTTTTCTT-T-GCCCAATTA
636 CATTAGGATACA-CGACATTGATGCTTTGGTGTCGCAAGAAAAG-CTTTTCTTCTCG-CC-ATTT
*** * * * * * * * ** *
1289623 TCCTTAAAATGAAAGTTCAACCCCTGAATAAGACAAG-CATCG-ATTCTCGTAATAATCTCCACT
697 TTGATAGAATAAAAGTTCATCTCCTAAATAAGACAAGACAT-GAATACCCACAATAATCCCCA-T
* * * * * *
1289686 CCTTTCAAGATTGGGAAGCCA-AAACA-CG
760 TCTTTTAGGATTAGGCA-CCATAAACATAG
** * * * * * * *
1289714 TTGCCTTCATTAGGATACACGATATTGATGCTTTGGTGTCT-CAAGAAAAGCTTTTCTTCTCGCC
1 TTTTC-TCATTAGGATACATGATATTGAAGCTTTGGT-TTTGCAACAAAGGC-TTTCTTCCCACC
* * * *
1289778 -ATTTTTGATAGAA-TC-AATGTT--TGTCTCTTAAATAAGA-AAGACT-TGAATACCCACCCTA
63 AATTGTTG-TA-AAGTCTAA-GTTCATG-C-CTTAAATGAGACAA-A-TATGGAT-TCCA--CTA
*** * * * * * * * *
1289836 A-G--CCCCATTCTTTTCAG-GATTAGGCTCCATAAACATAGTCTT-CTCATTAGGATACATGAT
118 ATGATTTTCATTCTTTT-TGTGATTTGGCACTATAAAAACA-TTTTCCTCTTTAGGATACATGAT
* * *
1289896 ATTGAA-ACTTTGGATTCGTAACAAAGGCTTTCTTCCCACCAATTGTTGTAAAG-CTAAGTTCGT
181 ATT-AATGCTTTGGTTTCATAACAAAGGCTTTCTTCCCACCAATTGTTGTAAAGTCTAAGTTCGT
* * * *
1289959 GCCTCAAATGAGACAAAAATGGATTCTACTAGTGATTTTCTTTCTTTTTGTGAATTAGCACTATA
245 GCCTCAAATGAGACAAATATGGATTCTACTAATGATTTTCATTCTTTTTGTG-ATTGGCACTATA
* *
1290024 AAAGCATTTTCCTCTTTAGGATACATGATATTAATGCTTTGGTTTCGTAACAAAGGCTTTCTTCC
309 AAAACATTTTCCTCTTTAGGATACATGATATTAATGCTTTGGTTTCGTAACGAAGGCTTTCTTCC
* * * ** *
1290089 CACCAATTATTGTAAAGTCTAAGTTCGTGCCTTAAATGAGACAAATATGGATTCTA-GGATTATC
374 CACCAA-TACTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCCACTAATGATC
* * *
1290153 ATCGTTCTTTTTGTGATAAGGCACTATAAAAACATTCTCCGCATTAGGATAATTGATATTGATGC
438 TTCATTCTTTTTGTGATAAGGCACTATAAAAACATTCTCCGCATTAGGATAA-TGACATTGATGC
* * * * * * *
1290218 TTTTCTTTTGCATGAAAATCTTTTCTTTGCCCAATTATCCTTAAAATTAAAGTTCATCCCTTGAA
502 TTTGCTTTCGCATGAAAGTCTTTTCTTTCCCCAATTATCCTTAAAATCAAAGTTCATCCCCTAAA
* * * * *
1290283 TAAGACAAGCATCGATTCTCCTAACAGTCT-C-CATTTTCTCCAAGATTGGGAAGCGAAAACACA
567 TAAGACAAGCATCGATTCTCGTAATAGTCTCCACACTTT-T-CAAGATTAGGAA-CCAAAACACA
**
1290346 TTGCCTTTGTTAGGATACACGACATTGATGCTTTGGTGTCGCAATGAAAAGCTTTTCTTCTCGCC
629 TTGCCTTCATTAGGATACACGACATTGATGCTTTGGTGTCGCAA-GAAAAGCTTTTCTTCTCGCC
* * * * * *
1290411 GTTTTTGATAGAATCAAAGGTT-GTCTCTTAAATAAGA-AAGACATGAATACTCACACTAATCCC
693 ATTTTTGATAGAAT-AAAAGTTCATCTCCTAAATAAGACAAGACATGAATACCCACAATAATCCC
*
1290474 CATTCTTTTCAGGGTTAGGCACCATAAACATAG
757 CATTCTTTT-AGGATTAGGCACCATAAACATAG
* * *
1290507 TCTTCTCGTTAGGATACATGATATTGAAGCTTTGGTTTTGCAACAAAGGCTTTCTTCCCCCCAAT
1 TTTTCTCATTAGGATACATGATATTGAAGCTTTGGTTTTGCAACAAAGGCTTTCTTCCCACCAAT
* * * ** *
1290572 TTTTGTAAAGTCTAAGTTCATGCCTCAAATGTGACAACCATGGATTCTACTAATGATTTTCATTC
66 TGTTGTAAAGTCTAAGTTCATGCCTTAAATGAGACAAATATGGATTCCACTAATGATTTTCATTC
* ** *
1290637 TTTTTGTGATTGGGCACTATAAACGCATTTTCCT-TATTAGGATATATGAT
131 TTTTTGTGATTTGGCACTATAAAAACATTTTCCTCT-TTAGGATACATGAT
1290687 GACAACCATG
Statistics
Matches: 1941, Mismatches: 471, Indels: 283
0.72 0.17 0.11
Matches are distributed among these distances:
786 4 0.00
787 48 0.02
788 94 0.05
789 592 0.30
790 172 0.09
791 220 0.11
792 223 0.11
793 443 0.23
794 135 0.07
795 10 0.01
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.36
Consensus pattern (788 bp):
TTTTCTCATTAGGATACATGATATTGAAGCTTTGGTTTTGCAACAAAGGCTTTCTTCCCACCAAT
TGTTGTAAAGTCTAAGTTCATGCCTTAAATGAGACAAATATGGATTCCACTAATGATTTTCATTC
TTTTTGTGATTTGGCACTATAAAAACATTTTCCTCTTTAGGATACATGATATTAATGCTTTGGTT
TCATAACAAAGGCTTTCTTCCCACCAATTGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAA
ATATGGATTCTACTAATGATTTTCATTCTTTTTGTGATTGGCACTATAAAAACATTTTCCTCTTT
AGGATACATGATATTAATGCTTTGGTTTCGTAACGAAGGCTTTCTTCCCACCAATACTGTAAAGT
CTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCCACTAATGATCTTCATTCTTTTTGTGATA
AGGCACTATAAAAACATTCTCCGCATTAGGATAATGACATTGATGCTTTGCTTTCGCATGAAAGT
CTTTTCTTTCCCCAATTATCCTTAAAATCAAAGTTCATCCCCTAAATAAGACAAGCATCGATTCT
CGTAATAGTCTCCACACTTTTCAAGATTAGGAACCAAAACACATTGCCTTCATTAGGATACACGA
CATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTCTCGCCATTTTTGATAGAATAAAAGTTCA
TCTCCTAAATAAGACAAGACATGAATACCCACAATAATCCCCATTCTTTTAGGATTAGGCACCAT
AAACATAG
Found at i:1293304 original size:13 final size:13
Alignment explanation
Indices: 1293286--1293311 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1293276 TACAGCAAGT
1293286 ATGTATCGATACA
1 ATGTATCGATACA
1293299 ATGTATCGATACA
1 ATGTATCGATACA
1293312 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1295570 original size:21 final size:21
Alignment explanation
Indices: 1295537--1295581 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
1295527 TTGCAAGTTG
*
1295537 AAATAAAGAAGTTGGCTAATGA
1 AAATAAAGAAGTTAGCTAA-GA
*
1295559 AAATAATG-AGTTAGCTAAGA
1 AAATAAAGAAGTTAGCTAAGA
1295579 AAA
1 AAA
1295582 ATGAAAACTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 9 0.43
22 7 0.33
ACGTcount: A:0.53, C:0.04, G:0.20, T:0.22
Consensus pattern (21 bp):
AAATAAAGAAGTTAGCTAAGA
Found at i:1297405 original size:15 final size:15
Alignment explanation
Indices: 1297385--1297415 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
1297375 TAAAAATGTC
*
1297385 CAAAATGAGGAAGCT
1 CAAAATGAAGAAGCT
1297400 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
1297415 C
1 C
1297416 CAAACGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.16, G:0.23, T:0.13
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:1299512 original size:13 final size:13
Alignment explanation
Indices: 1299494--1299519 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1299484 ACATTTTTCT
1299494 TTGTATCGATACA
1 TTGTATCGATACA
1299507 TTGTATCGATACA
1 TTGTATCGATACA
1299520 GGGTGATTAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:1303331 original size:34 final size:35
Alignment explanation
Indices: 1303293--1303359 Score: 102
Period size: 37 Copynumber: 1.9 Consensus size: 35
1303283 CCTTACAACA
1303293 CTATC-TTTC-AAGGCTAAGATAGAAACCTCTCTCT
1 CTATCTTTTCAAAGGCTAAGATAG-AACCTCTCTCT
1303327 CTATCTTTTTCAAAGGCTAAGATAGAACCTCTC
1 CTATC-TTTTCAAAGGCTAAGATAGAACCTCTC
1303360 AATCACTTAG
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
34 5 0.17
36 12 0.40
37 13 0.43
ACGTcount: A:0.30, C:0.25, G:0.12, T:0.33
Consensus pattern (35 bp):
CTATCTTTTCAAAGGCTAAGATAGAACCTCTCTCT
Found at i:1306018 original size:23 final size:24
Alignment explanation
Indices: 1305973--1306019 Score: 62
Period size: 23 Copynumber: 2.0 Consensus size: 24
1305963 CAAAGGATTG
*
1305973 AACACAAATTCAATTAAGCACAAA
1 AACACAAATTCAATTAAGAACAAA
1305997 AACACAAA-TCAATTGAA-AACAAA
1 AACACAAATTCAATT-AAGAACAAA
1306020 TTTTCAACAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
23 11 0.52
24 10 0.48
ACGTcount: A:0.62, C:0.19, G:0.04, T:0.15
Consensus pattern (24 bp):
AACACAAATTCAATTAAGAACAAA
Found at i:1308641 original size:34 final size:35
Alignment explanation
Indices: 1308603--1308669 Score: 102
Period size: 37 Copynumber: 1.9 Consensus size: 35
1308593 CCTTACAACA
1308603 CTATC-TTTC-AAGGCTAAGATAGAAACCTCTCTCT
1 CTATCTTTTCAAAGGCTAAGATAG-AACCTCTCTCT
1308637 CTATCTTTTTCAAAGGCTAAGATAGAACCTCTC
1 CTATC-TTTTCAAAGGCTAAGATAGAACCTCTC
1308670 AATCACTTAG
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
34 5 0.17
36 12 0.40
37 13 0.43
ACGTcount: A:0.30, C:0.25, G:0.12, T:0.33
Consensus pattern (35 bp):
CTATCTTTTCAAAGGCTAAGATAGAACCTCTCTCT
Found at i:1309145 original size:13 final size:13
Alignment explanation
Indices: 1309127--1309152 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1309117 CAATTTTTTG
1309127 TGTATCGATACAT
1 TGTATCGATACAT
1309140 TGTATCGATACAT
1 TGTATCGATACAT
1309153 ACTTGGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1309167 original size:32 final size:33
Alignment explanation
Indices: 1309107--1309170 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 33
1309097 TACAAGCCAA
** *
1309107 TGTATCGATACAATTTTTTGTGTATCGATACAT
1 TGTATCGATACAATACTTGGTGTATCGATACAT
1309140 TGTATCGATAC-ATACTTGGTGTATCGATACA
1 TGTATCGATACAATACTTGGTGTATCGATACA
1309171 AGTTTGGCTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 17 0.61
33 11 0.39
ACGTcount: A:0.28, C:0.14, G:0.17, T:0.41
Consensus pattern (33 bp):
TGTATCGATACAATACTTGGTGTATCGATACAT
Found at i:1309624 original size:20 final size:19
Alignment explanation
Indices: 1309578--1309633 Score: 67
Period size: 20 Copynumber: 2.8 Consensus size: 19
1309568 AAAACCCTTA
**
1309578 AATGTATCGATACACAATTC
1 AATGTATCGATACA-TGTTC
*
1309598 AAAGTATCGATACATGTTGC
1 AATGTATCGATACATGTT-C
1309618 AATGTATCGATACATG
1 AATGTATCGATACATG
1309634 AAAAAGATGT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
19 2 0.06
20 29 0.94
ACGTcount: A:0.38, C:0.16, G:0.16, T:0.30
Consensus pattern (19 bp):
AATGTATCGATACATGTTC
Found at i:1309710 original size:13 final size:13
Alignment explanation
Indices: 1309692--1309717 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1309682 TACAGCAAGT
1309692 ATGTATCGATACA
1 ATGTATCGATACA
1309705 ATGTATCGATACA
1 ATGTATCGATACA
1309718 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1311207 original size:21 final size:21
Alignment explanation
Indices: 1311174--1311218 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
1311164 TTGCAAGTTG
*
1311174 AAATAAAGAAGTTGGCTAATGA
1 AAATAAAGAAGTTAGCTAA-GA
*
1311196 AAATAATG-AGTTAGCTAAGA
1 AAATAAAGAAGTTAGCTAAGA
1311216 AAA
1 AAA
1311219 ATGAAAACTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 9 0.43
22 7 0.33
ACGTcount: A:0.53, C:0.04, G:0.20, T:0.22
Consensus pattern (21 bp):
AAATAAAGAAGTTAGCTAAGA
Found at i:1313042 original size:15 final size:15
Alignment explanation
Indices: 1313022--1313052 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
1313012 TAAAAATGTC
*
1313022 CAAAATGAGGAAGCT
1 CAAAATGAAGAAGCT
1313037 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
1313052 C
1 C
1313053 CAAACGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.16, G:0.23, T:0.13
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:1317696 original size:13 final size:13
Alignment explanation
Indices: 1317678--1317703 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1317668 TACAGCAAGT
1317678 ATGTATCGATACA
1 ATGTATCGATACA
1317691 ATGTATCGATACA
1 ATGTATCGATACA
1317704 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1321274 original size:42 final size:42
Alignment explanation
Indices: 1321219--1321337 Score: 193
Period size: 42 Copynumber: 2.8 Consensus size: 42
1321209 TTCTTCTCTC
* *
1321219 CTCCTCCTGTCATCCCTCCTCTCTCTATTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
*
1321261 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
* *
1321303 CTCCTCCTATCATCCCTCCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
1321338 TTGAGGGCTA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 71 1.00
ACGTcount: A:0.08, C:0.46, G:0.03, T:0.43
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
Found at i:1321278 original size:12 final size:11
Alignment explanation
Indices: 1321252--1321327 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
1321242 TCTATTATCT
*
1321252 CTCCTGTCTCTC
1 CTCCTATCTC-C
1321264 CTCCTATCATCC
1 CTCCTATC-TCC
1321276 CTCCTATCT--
1 CTCCTATCTCC
*
1321285 CTACTATCT--
1 CTCCTATCTCC
*
1321294 CTCCTGTCTCTC
1 CTCCTATCTC-C
1321306 CTCCTATCATCC
1 CTCCTATC-TCC
*
1321318 CTCCTCTCTC
1 CTCCTATCTC
1321328 TTCTTTCTCT
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 3 0.06
12 31 0.58
13 4 0.08
ACGTcount: A:0.09, C:0.49, G:0.03, T:0.39
Consensus pattern (11 bp):
CTCCTATCTCC
Found at i:1321279 original size:24 final size:24
Alignment explanation
Indices: 1321243--1321328 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
1321233 CCTCCTCTCT
* *
1321243 CTATTATCTCTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
* *
1321267 CTATCATCCCTCC--TATCT-CTA
1 CTATCATCCCTCCTGTCTCTCCTC
1321288 CTATC-T--CTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
*
1321309 CTATCATCCCTCCTCTCTCT
1 CTATCATCCCTCCTGTCTCT
1321329 TCTTTCTCTT
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 4 0.08
20 5 0.10
21 14 0.29
22 5 0.10
24 21 0.43
ACGTcount: A:0.10, C:0.45, G:0.02, T:0.42
Consensus pattern (24 bp):
CTATCATCCCTCCTGTCTCTCCTC
Found at i:1321303 original size:18 final size:18
Alignment explanation
Indices: 1321234--1321304 Score: 52
Period size: 18 Copynumber: 3.6 Consensus size: 18
1321224 CCTGTCATCC
* *
1321234 CTCCTCTCTCTATTATCT
1 CTCCTGTCTCTACTATCT
*
1321252 CTCCTGTCTCTCCTCCTATCAT
1 CTCCTG--TCT-CTACTATC-T
*
1321274 CCCTCCTATCTCTACTATCT
1 --CTCCTGTCTCTACTATCT
1321294 CTCCTGTCTCT
1 CTCCTGTCTCT
1321305 CCTCCTATCA
Statistics
Matches: 41, Mismatches: 6, Indels: 12
0.69 0.10 0.20
Matches are distributed among these distances:
18 15 0.37
20 4 0.10
21 13 0.32
22 4 0.10
24 5 0.12
ACGTcount: A:0.10, C:0.44, G:0.03, T:0.44
Consensus pattern (18 bp):
CTCCTGTCTCTACTATCT
Found at i:1323517 original size:158 final size:158
Alignment explanation
Indices: 1323044--1323862 Score: 1139
Period size: 158 Copynumber: 5.2 Consensus size: 158
1323034 AGACAGATTT
* *
1323044 TTCATT-TTTTTGTGATTTGGCACTATAAAAACATTTTCCTCCTAAGGATACATGATATTAATGC
1 TTCATTCTTTTTGTGATTTGGCACTATAAAAACATTTTCCTCTTTAGGATACATGATATTAATGC
* * * * * *
1323108 TTTGGTTTTGCAACAAAGGCTTTCTTCCCACTAATTGTTGTAAAGTCTAAGTTCATACCACAAAT
66 TTTGGTTTCGTAACAAAGGCTTTCTTCCCACCAATTGTTGTAAAGTCTAAGTTCGTGCCTCAAAT
* *
1323173 GAGGCAAATATGGATTCTAGAAATGATC
131 GAGACAAATATGGATTCTAGTAATGATC
*
1323201 TTCATTCTTTTTGTGATTTGGCACTATAAAAACATTTTCCTCTTTAGGATACATGATATTAATGG
1 TTCATTCTTTTTGTGATTTGGCACTATAAAAACATTTTCCTCTTTAGGATACATGATATTAATGC
* *
1323266 TTTGGTTTCGT----AA--CTTTCTTCCAACCAATTGTAGTAAAGTCTAAGTTCGTGCCTCAAAT
66 TTTGGTTTCGTAACAAAGGCTTTCTTCCCACCAATTGTTGTAAAGTCTAAGTTCGTGCCTCAAAT
* * *
1323325 GAGACAAATATGGATTCTACTAATTATT
131 GAGACAAATATGGATTCTAGTAATGATC
*
1323353 TTCATTCTTTATGTGATTTGGCACTATAAAAACATTTTCCTCTTTAGGATACATGATATTAATGC
1 TTCATTCTTTTTGTGATTTGGCACTATAAAAACATTTTCCTCTTTAGGATACATGATATTAATGC
* * *
1323418 TTTGGTTTCGTAACAAAGGCTTTCTTCCCACCAATTGTTGTAAAGTATAACTTTGTGCCTCAAAT
66 TTTGGTTTCGTAACAAAGGCTTTCTTCCCACCAATTGTTGTAAAGTCTAAGTTCGTGCCTCAAAT
* * * *
1323483 GAGACCAATATGGATTCTACTAGTGATT
131 GAGACAAATATGGATTCTAGTAATGATC
* *
1323511 TTCATTCTTTTTGTGATTTGGCACTATAAAAAGATTTTACTCTTTAGGATACATGATATTAATGC
1 TTCATTCTTTTTGTGATTTGGCACTATAAAAACATTTTCCTCTTTAGGATACATGATATTAATGC
* *
1323576 TTTGGTTTGGTAACAAAGGCTTTCTTCCCCCCAATTGTTGTAAAGTCTAAGTTCGTGCCTCAAAT
66 TTTGGTTTCGTAACAAAGGCTTTCTTCCCACCAATTGTTGTAAAGTCTAAGTTCGTGCCTCAAAT
* * *
1323641 AAGACAAATGTGGATTCTAGTATTGATC
131 GAGACAAATATGGATTCTAGTAATGATC
* ** * * * * *
1323669 ATCATTCTTTTTGTGATAAGGCACTATAAACACATTCTCCGCATTAGGATATATGATATTAATGC
1 TTCATTCTTTTTGTGATTTGGCACTATAAAAACATTTTCCTCTTTAGGATACATGATATTAATGC
** ** * *
1323734 TTTGGTTTCACAACAAAGGCTTTCTTCCCACTGATTGTTATAAAGTCTAAGTTTGTGCCTCAAAT
66 TTTGGTTTCGTAACAAAGGCTTTCTTCCCACCAATTGTTGTAAAGTCTAAGTTCGTGCCTCAAAT
**
1323799 GAGACAAATATGGATTCTAGTAACAATC
131 GAGACAAATATGGATTCTAGTAATGATC
* * *
1323827 TTCATTCTTTTTGTGATATGGCACTATGAACACATT
1 TTCATTCTTTTTGTGATTTGGCACTATAAAAACATT
1323863 CTCTGCGTTA
Statistics
Matches: 589, Mismatches: 66, Indels: 13
0.88 0.10 0.02
Matches are distributed among these distances:
152 137 0.23
154 2 0.00
156 2 0.00
157 6 0.01
158 442 0.75
ACGTcount: A:0.29, C:0.17, G:0.15, T:0.39
Consensus pattern (158 bp):
TTCATTCTTTTTGTGATTTGGCACTATAAAAACATTTTCCTCTTTAGGATACATGATATTAATGC
TTTGGTTTCGTAACAAAGGCTTTCTTCCCACCAATTGTTGTAAAGTCTAAGTTCGTGCCTCAAAT
GAGACAAATATGGATTCTAGTAATGATC
Found at i:1324109 original size:159 final size:159
Alignment explanation
Indices: 1323899--1324236 Score: 421
Period size: 159 Copynumber: 2.1 Consensus size: 159
1323889 CGTTTTTCTA
* * *
1323899 TTGCATGAAAACCTTTTCTTTGCCCAATTATCCTCGAAATGAAAGTTCATCCCTTGAATAAGACA
1 TTGCATGAAAACCTTTTCTTTGCCCAATTATCCTCAAAATCAAAGTTCATCCCCTGAATAAGACA
* * * *
1323964 AGCCTC-ACTTCTGATAATAGTCTCCACTCCTTT-CAAGATTGGGAAGCCAAAACACTTTGCCTT
66 AGCATCGA-TTCTCATAACAGTCTCCA-TCCTTTCCAAGATTGGGAAGCCAAAACACATTG-CTT
* *
1324027 T-GTTCGGATACTCGACATTGATGCTTTGTTT
128 TCGTTAGGATACACGACATTGATGCTTTGTTT
* * * *
1324058 TTGCATGGAAATCTTTTCTTTGCCCAATTATCCTTAAAATCAAAGTTCATCCCCTGAGTAAGACA
1 TTGCATGAAAACCTTTTCTTTGCCCAATTATCCTCAAAATCAAAGTTCATCCCCTGAATAAGACA
* * ** *
1324123 AGGATCGATTCTCCTAACAGTCTCCATTTTTTCCAAGGTTGGGAAGCCAAAACACATTGCTTTCG
66 AGCATCGATTCTCATAACAGTCTCCATCCTTTCCAAGATTGGGAAGCCAAAACACATTGCTTTCG
* *
1324188 TTAGGATACACGACATTGATGCTTTGGTG
131 TTAGGATACACGACATTGATGCTTTGTTT
* * *
1324217 TCGCAAGAAAAGCTTTTCTT
1 TTGCATGAAAACCTTTTCTT
1324237 CCTGCCGTTT
Statistics
Matches: 152, Mismatches: 24, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
158 8 0.05
159 143 0.94
160 1 0.01
ACGTcount: A:0.28, C:0.23, G:0.16, T:0.33
Consensus pattern (159 bp):
TTGCATGAAAACCTTTTCTTTGCCCAATTATCCTCAAAATCAAAGTTCATCCCCTGAATAAGACA
AGCATCGATTCTCATAACAGTCTCCATCCTTTCCAAGATTGGGAAGCCAAAACACATTGCTTTCG
TTAGGATACACGACATTGATGCTTTGTTT
Found at i:1324612 original size:142 final size:142
Alignment explanation
Indices: 1324351--1324629 Score: 359
Period size: 142 Copynumber: 2.0 Consensus size: 142
1324341 TTCTCATTAA
* * * *
1324351 GATACATGATATTGAAGCTTTGGTTTCGTAGCAAAGGCTTTCTTCTCACCAATTTTTGTAAAGTC
1 GATACATGATATTGAAGCTTTGCTTTCGTAACAAAGGCTTTCTTCCCACCAATTATTGTAAAGTC
* * *
1324416 TAAGGTCCTGCCTCAAATGCGACAAACATGGATTCTTCTAATGACTTTAATTCTTTTTGTGATTT
66 TAAGGTCCTGCCTCAAATGAGACAAACATGGATTCTACTAATGACTTTAATTCTTTTTGTGATAT
1324481 GGCACTATAAAG
131 GGCACTATAAAG
* *
1324493 GATATATGATATT-AATGCTTTGCTTTC-TCAACAAAGGCTTT-TTCCCACCGATTATTGTAAAG
1 GATACATGATATTGAA-GCTTTGCTTTCGT-AACAAAGGCTTTCTTCCCACCAATTATTGTAAAG
* * * * * *
1324555 TCTTAAGTTCGTGCCTTAAATGAGACAAATATGGATTCTAGTAATGA-TCTTCATTCTTTTTGTG
64 TC-TAAGGTCCTGCCTCAAATGAGACAAACATGGATTCTACTAATGACT-TTAATTCTTTTTGTG
1324619 ATATGGCACTA
127 ATATGGCACTA
1324630 CGAACACAAT
Statistics
Matches: 118, Mismatches: 15, Indels: 8
0.84 0.11 0.06
Matches are distributed among these distances:
141 24 0.20
142 94 0.80
ACGTcount: A:0.28, C:0.17, G:0.17, T:0.38
Consensus pattern (142 bp):
GATACATGATATTGAAGCTTTGCTTTCGTAACAAAGGCTTTCTTCCCACCAATTATTGTAAAGTC
TAAGGTCCTGCCTCAAATGAGACAAACATGGATTCTACTAATGACTTTAATTCTTTTTGTGATAT
GGCACTATAAAG
Found at i:1326876 original size:12 final size:11
Alignment explanation
Indices: 1326854--1326929 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
1326844 AGAGAAAGAA
*
1326854 GAGAGAGGAGG
1 GAGATAGGAGG
1326865 GATGATAGGAGG
1 GA-GATAGGAGG
*
1326877 AGAGACAGGA--
1 -GAGATAGGAGG
*
1326887 GAGATAGTA--
1 GAGATAGGAGG
1326896 GAGATAGGAGG
1 GAGATAGGAGG
1326907 GATGATAGGAGG
1 GA-GATAGGAGG
*
1326919 AGAGACAGGAG
1 -GAGATAGGAG
1326930 AGATAATAGA
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 4 0.08
12 30 0.57
13 4 0.08
ACGTcount: A:0.39, C:0.03, G:0.49, T:0.09
Consensus pattern (11 bp):
GAGATAGGAGG
Found at i:1326886 original size:24 final size:24
Alignment explanation
Indices: 1326853--1326938 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
1326843 AAGAGAAAGA
*
1326853 AGAGAGAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
*
1326877 AGAGACAGGA--GA-GAT---AGT
1 AGAGACAGGAGGGATGATAGGAGG
*
1326895 AGAGATAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
* *
1326919 AGAGACAGGAGAGATAATAG
1 AGAGACAGGAGGGATGATAG
1326939 AGAGAGGAGG
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 11 0.22
20 2 0.04
21 6 0.12
22 2 0.04
24 28 0.57
ACGTcount: A:0.42, C:0.02, G:0.45, T:0.10
Consensus pattern (24 bp):
AGAGACAGGAGGGATGATAGGAGG
Found at i:1326905 original size:42 final size:42
Alignment explanation
Indices: 1326844--1326962 Score: 193
Period size: 42 Copynumber: 2.8 Consensus size: 42
1326834 TAGCCCTCAA
* *
1326844 AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
*
1326886 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
* *
1326928 AGAGATAATAGAGAGAGGAGGGATGACAGGAGGAG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAG
1326963 GAGAGAAGAA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 71 1.00
ACGTcount: A:0.43, C:0.03, G:0.46, T:0.08
Consensus pattern (42 bp):
AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
Found at i:1332752 original size:476 final size:476
Alignment explanation
Indices: 1331785--1332795 Score: 1327
Period size: 476 Copynumber: 2.1 Consensus size: 476
1331775 TGTCATCAAT
* * *
1331785 TAATGATCTTCATTTTTTTTGTGATAAGGCACTATAAACATTTTCTCCGCATTAGGATAATTGAC
1 TAATAATCTTCATTCTTTTTGTGATAAGGCACTATAAACACTTTCTCCGCATTAGGATAATTGAC
* * *
1331850 ATTGATGTTTTTCTTTTGCATTAAAGTCTTTTCTTTGCCCAATTATCCTTAAAATGAAAGTTCAT
66 ATTGATGTTTTTCTTTGGCATGAAAGTCTTTTCTTTGCCCAATTATCCTGAAAATGAAAGTTCAT
* * *
1331915 CCCCTGAATAAGACAAGCATCGATTCTCGTAATAGTCTCCACTCCTTTCAAGATTGGGAAGCCAA
131 CCCCTGAATAAGAAAAGCATCGATTCTCCTAACAGTCTCCACTCCTTTCAAGATTGGGAAGCCAA
* *
1331980 AACACATTGCCTTCAATAGGATACACGACATTGATGCTTTGATGTCTCAAGAAAAGCTTTTCTTC
196 AACACATTACCTTCAATAGGAAACACGACATTGATGCTTTGATGTCTCAAGAAAAGCTTTTCTTC
* *
1332045 TCGCCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAAAGACACGAATACCCACCCGAAT
261 TCGCCATTTTTGAGAGAATCAAAGTTTGTCTCTTAAATAAGAAAGACACGAATACCCACACGAAT
* * *
1332110 CCCCATTCTTTTCAAGATTAGACTCCATAAACAAAGTCTTCTCATTAGGATAGATGATATTGAAG
326 CCCCAGTCTTTTCAAGATTAGACACCATAAACAAAGTCTTCTCATTAGGATACATGATATTGAAG
* * * *
1332175 TTTTGGTTTCGCAACAAAGGTTTTCTTCCCACCAATTGTTGTAAAGTCTAAGTTCGTGCCTCAAA
391 TTTTGGTTTCGCAACAAAGGCTTCCCTCCCACCAATTGTTGAAAAGTCTAAGTTCGTGCCTCAAA
* *
1332240 TGAGACAAATATGGATTCTAG
456 TGAGACAAACATGGATTCTAC
** * * * * *
1332261 TGTTGATCATCATTCTTTTTGTGATAAGGAAGTATAAACACATTCTCCGCATTAGGATAATTGAC
1 TAATAATCTTCATTCTTTTTGTGATAAGGCACTATAAACACTTTCTCCGCATTAGGATAATTGAC
*
1332326 ATTGATGTTTTTCTTTGGCATGGAAA-TCTTTTCTTTGCCTAATTATTCC-GAAAATGAAAGTTC
66 ATTGATGTTTTTCTTTGGCAT-GAAAGTCTTTTCTTTGCCCAATTA-TCCTGAAAATGAAAGTTC
* * **
1332389 ATCCCTTGAATAAGAAAAGCATCGATTCTCCTAACAGTCTCC-TTTTTTTCCAAGATTGGGAAGC
129 ATCCCCTGAATAAGAAAAGCATCGATTCTCCTAACAGTCTCCACTCCTTT-CAAGATTGGGAAGC
* * ** * *
1332453 CAGAGCACATTACCTTCGTTAGGAAACTCGACATTGATGCTTTGGTG-CTGCAAGAAAAGCTTTT
193 CAAAACACATTACCTTCAATAGGAAACACGACATTGATGCTTTGATGTCT-CAAGAAAAGCTTTT
* * * *
1332517 CTTCTTGCCGTTTTTGAGAGAATCAAAGTTTGTCTCTTAAATAAGACAA-ACATGAATACTCACA
257 CTTCTCGCCATTTTTGAGAGAATCAAAGTTTGTCTCTTAAATAAGA-AAGACACGAATACCCACA
* * * * * * *
1332581 CTAATCCCCAGTCTTTTTAGGGTTAGGCACCAT-AACATAGTCTTCTCGTTAGGATACATGATAT
321 CGAATCCCCAGTCTTTTCAAGATTAGACACCATAAACAAAGTCTTCTCATTAGGATACATGATAT
* * * * *
1332645 TTAA-TCTTTGGTTTTGCAACAAAGGCTTCCCTCCCACCAGTTTTTGAAAAGTCTAAGTTTTCTT
386 TGAAGT-TTTGGTTTCGCAACAAAGGCTTCCCTCCCACCAATTGTTGAAAAGTCTAAG--TTCGT
*
1332709 GCCTCAAATGCGACAAACATGGATTCT-C
448 GCCTCAAATGAGACAAACATGGATTCTAC
* * ** * *
1332737 TAATAATTTTCATTCTTTTTTTGATTTGGCACTATAAACACTTTTTCCTCATTAGGATA
1 TAATAATCTTCATTCTTTTTGTGATAAGGCACTATAAACACTTTCTCCGCATTAGGATA
1332796 CATGATATTA
Statistics
Matches: 459, Mismatches: 68, Indels: 16
0.85 0.13 0.03
Matches are distributed among these distances:
474 1 0.00
475 81 0.18
476 340 0.74
477 37 0.08
ACGTcount: A:0.29, C:0.20, G:0.15, T:0.36
Consensus pattern (476 bp):
TAATAATCTTCATTCTTTTTGTGATAAGGCACTATAAACACTTTCTCCGCATTAGGATAATTGAC
ATTGATGTTTTTCTTTGGCATGAAAGTCTTTTCTTTGCCCAATTATCCTGAAAATGAAAGTTCAT
CCCCTGAATAAGAAAAGCATCGATTCTCCTAACAGTCTCCACTCCTTTCAAGATTGGGAAGCCAA
AACACATTACCTTCAATAGGAAACACGACATTGATGCTTTGATGTCTCAAGAAAAGCTTTTCTTC
TCGCCATTTTTGAGAGAATCAAAGTTTGTCTCTTAAATAAGAAAGACACGAATACCCACACGAAT
CCCCAGTCTTTTCAAGATTAGACACCATAAACAAAGTCTTCTCATTAGGATACATGATATTGAAG
TTTTGGTTTCGCAACAAAGGCTTCCCTCCCACCAATTGTTGAAAAGTCTAAGTTCGTGCCTCAAA
TGAGACAAACATGGATTCTAC
Found at i:1333566 original size:634 final size:633
Alignment explanation
Indices: 1332150--1333545 Score: 2036
Period size: 634 Copynumber: 2.2 Consensus size: 633
1332140 ACAAAGTCTT
* * *
1332150 CTCATTAGGATAGATGATATTGAA-GTTTTGGTTTCGCAACAAAGGTTTTCTTCCCACCAATTGT
1 CTCATTAGGATACATGATATT-AATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTGT
** *
1332214 TGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGTGTTGATCATCATTCTTT
65 TGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATTCTTT
* * * * * ** *
1332279 TTGTGATAAGGAAGTATAAACACATTCTCCGCATTAGGATAATTGACATTGATGTTTTTCTTTGG
130 TTGTGATAAGGCACTATAAACACAATCCCCGCATTACGATAAAAGACATTGAAGTTTTTCTTTGG
* *
1332344 CATGGAAATCTTTTCTTTGCCTAATTATTCCGAAAATGAAAGTTCATCCCTTGAATAAGAAAAGC
195 CATGAAAATCTTTTCTTTCCCTAATTATTCCGAAAATGAAAGTTCATCCCTTGAATAAGAAAAGC
* *
1332409 ATCGATTCTCCTAACAGTCTCCTTTTTTTCCAAGATTGGGAAGCCAGAGCACATTACCTTCGTTA
260 ATCGATTCTCCTAACAGTCTCCTTTTTTTCCAAGATTGGGAAGCCAAAACACATTACCTTCGTTA
**
1332474 GGAAACTCGACATTGATGCTTTGGTGCTGCAAGAAAAGCTTTTCTTCTTGCCGTTTTTGAGAGAA
325 GGAAACTCGACATTGATGCTTTGGTGCTGCAAGAAAAGCTTTTCTTCCCGCCGTTTTTGAGAGAA
*
1332539 TCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCACACTAATCCCCAGTCTTTTTAGGGT
390 TCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCACACTAATCCCCAGTCTTTTCAGGGT
* * * * * * *
1332604 TAGGCACCATAACATAGTCTTCTCGTTAGGATACATGATATTTAATCTTTGGTTTTGCAACAAAG
455 TAGGCACCATAACATAGTCTTCTCATTAGGATACATCATACTGAAGCATTGGTCTTGCAACAAAG
* *
1332669 GCTTCCCTCCCACCAGTTTTTGAAAAGTCTAAGTTTTCTTGCCTCAAATGCGACAAACATGGATT
520 GCTTCCCTCCCACCAGTTTTTGAAAAGTCTAAG-TTTCATGACTCAAATGCGACAAACATGGATT
* * *
1332734 CTCTAATAATTTTCATTCTTTTTTTGATTTGGCACTATAAACACTTTTTC
584 CTCTAATAATTTTCATTCTTTTTGTGATTTGGCACAATAAACACATTTTC
* *
1332784 CTCATTAGGATACATGATATTAATGCTTTGATTTGGCAACAAAGGCTTTCTTCCCACCAATTGTT
1 CTCATTAGGATACATGATATTAATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTGTT
* * *
1332849 ATAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTCCAATCTTTT
66 GTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATTCTTTT
* *
1332914 TGTGATAAGGCACTATAAACACAATCCCCTCATTACGATAAAAGACATTGAAGTTTTTCTTTTGC
131 TGTGATAAGGCACTATAAACACAATCCCCGCATTACGATAAAAGACATTGAAGTTTTTCTTTGGC
* * *
1332979 ATGAAAATCTTTTCTTTCCCCT-ATT-TTCCTTAAAATGAAAGTTCTTCCCTTGAATAAGACAAG
196 ATGAAAATCTTTTCTTT-CCCTAATTATTCC-GAAAATGAAAGTTCATCCCTTGAATAAGAAAAG
* *
1333042 CATCGATTCTCCTAACAGTCT-CTATTTTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTCGT
259 CATCGATTCTCCTAACAGTCTCCT-TTTTTTCCAAGATTGGGAAGCCAAAACACATTACCTTCGT
** * *
1333106 TAGGATGCAT-GACATTGATGCTTTAGG-G-T-CAAAAGGAAAGCTTTTCTTCCCGCCGTTTTTT
323 TAGGAAAC-TCGACATTGATGCTTT-GGTGCTGC--AAGAAAAGCTTTTCTTCCCGCCGTTTTTG
* * * * *
1333167 ATAGAATCCAAGTTTTTCTCTTAAATAAGACTAACATGAATACTCACACTAATCCCCATTCTTTT
384 AGAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCACACTAATCCCCAGTCTTTT
* *
1333232 CAGGGTTAGGTACCATAAATATAGTCTTCTCATTAGGATACATCATACTGAAGCATTGGTCTTGC
449 CAGGGTTAGGCACCAT-AACATAGTCTTCTCATTAGGATACATCATACTGAAGCATTGGTCTTGC
* * *
1333297 AACAAAGGCTTTCTTCCCACCAGTTTTTGTAAAGTCTAAG-TTCATGACTCAAATGCGACAAACA
513 AACAAAGGCTTCCCTCCCACCAGTTTTTGAAAAGTCTAAGTTTCATGACTCAAATGCGACAAACA
* *
1333361 TGGATTCTACTGATGATTTTCATTCTTTTTGTGATTTGGCACAATAAACACATTTTC
578 TGGATTCT-CTAATAATTTTCATTCTTTTTGTGATTTGGCACAATAAACACATTTTC
* * *
1333418 CTCATTAGGATACATGATATTAATGCTTTGGTTTCACAACAAAGGCTTTCTTCCAACCTATTGTT
1 CTCATTAGGATACATGATATTAATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTGTT
* *
1333483 GTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTACTAATGATTTTCATTCTT
66 GTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATTCTT
1333546 CACGTGATTT
Statistics
Matches: 681, Mismatches: 71, Indels: 20
0.88 0.09 0.03
Matches are distributed among these distances:
632 1 0.00
633 39 0.06
634 558 0.82
635 83 0.12
ACGTcount: A:0.29, C:0.19, G:0.15, T:0.36
Consensus pattern (633 bp):
CTCATTAGGATACATGATATTAATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTGTT
GTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATTCTTTT
TGTGATAAGGCACTATAAACACAATCCCCGCATTACGATAAAAGACATTGAAGTTTTTCTTTGGC
ATGAAAATCTTTTCTTTCCCTAATTATTCCGAAAATGAAAGTTCATCCCTTGAATAAGAAAAGCA
TCGATTCTCCTAACAGTCTCCTTTTTTTCCAAGATTGGGAAGCCAAAACACATTACCTTCGTTAG
GAAACTCGACATTGATGCTTTGGTGCTGCAAGAAAAGCTTTTCTTCCCGCCGTTTTTGAGAGAAT
CAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCACACTAATCCCCAGTCTTTTCAGGGTT
AGGCACCATAACATAGTCTTCTCATTAGGATACATCATACTGAAGCATTGGTCTTGCAACAAAGG
CTTCCCTCCCACCAGTTTTTGAAAAGTCTAAGTTTCATGACTCAAATGCGACAAACATGGATTCT
CTAATAATTTTCATTCTTTTTGTGATTTGGCACAATAAACACATTTTC
Found at i:1333987 original size:950 final size:952
Alignment explanation
Indices: 1332629--1334494 Score: 2886
Period size: 950 Copynumber: 2.0 Consensus size: 952
1332619 AGTCTTCTCG
* * *
1332629 TTAGGATACATGATATTTAATCTTTGGTTTTGCAACAAAGGCTTCCCTCCCACCAGTTTTTGAAA
1 TTAGGATACATGATATTTAATCTTTGGTTTCGCAACAAAGGCTTCCCTCCCACCAATTGTTGAAA
* * * *
1332694 AGTCTAAGTTTTCTTGCCTCAAATGCGACAAACATGGATTCTCTAATAATTTTCATTCTTTTTTT
66 AGTATAAGTTTTCGTGCCTCAAATGAGACAAACATGGATTCTCTAATAATTTTCATTCTTTTTGT
** * *
1332759 GATTTGGCACTATAAACACTTTTTCCTCATTAGGATACATGATATTAATGCTTTGATTTGGCAAC
131 GATTTACCACTATAAAAAATTTTTCCTCATTAGGATACATGATATTAATGCTTTGATTTGGCAAC
1332824 AAAGGCTTTCTTCCCACCAATTGTTATAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGA
196 AAAGGCTTTCTTCCCACCAATTGTTATAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGA
*
1332889 TTCTAGTAATGATCTCCAATCTTTTTGTGATAAGGCACTATAAACACAATCCCCTCATTACGATA
261 TTCTAGTAATGATCTCCAATCTTTTTGTGATAAGGCACTATAAACACAATCCCCGCATTACGATA
* * * *
1332954 AAAGACATTGAAGTTTTTCTTTTGCATGAAAATCTTTTCTTTCCCCTATTTTCCTTAAAATGAAA
326 AAAGACATTGAAGCTTTTCTTTTGCATGAAAATCTTTTCTTTCCCCAATTATCCTTAAAATCAAA
*
1333019 GTTCTTCCCTTGAATAAGACAAGCATCGATTCTCCTAACAGTCTCTATTTTTTTCAAGATTGGGA
391 GTTCTTCCCTTGAATAAGACAAGCATCGATTCTCCTAACAGTCTCCATTTTTTTCAAGATTGGGA
* * * * *
1333084 AGCCAAAACACATTGCCTTCGTTAGGATGCATGACATTGATGCTTTAGG-GTCAAAAGGAAAGCT
456 AGCCAAAACACATTGCCTTCGTTAGGATACACGACATTGATGCTAT-GGTGTCAAAAGAAAAGCG
* * * * * * *
1333148 TTTCTTCCCGCCGTTTTTTATAGAATCCAAGTTTTTCTCTTAAATAAGACTA-ACATGAATACTC
520 TTTCTTCCCACCATTTTTGATAGAATCAAAGGTTGTCTCTTAAATAAGA-AAGACATGAATACTC
* * *
1333212 ACACTAATCCCCATTCTTTTCAGGGTTAGGTACCATAAATATAGTCTTCTCATTAGGATACATCA
584 ACACTAATCCCCATTCCTTTCAGGGTTAGGCACCATAAACATAGTCTTCTCATTAGGATACATCA
*
1333277 TACTGAAGCATTGGTCTT-GCAACAAAGGCTTTCTTCCCACCAGTTTTTGTAAAGTCTAAGTTCA
649 TACTGAAGCATTGGT-TTCGCAACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCA
*
1333341 TGACTCAAATGCGACAAACATGGATTCTACTGATGATTTTCATTCTTTTTGTGATTTGGCACAAT
713 TGACTCAAATGCGACAAACATGGATTCTACTAATGATTTTCATTCTTTTTGTGATTTGGCACAAT
*
1333406 AAACACATTTTCCTCATTAGGATACATGATATTAATGCTTTGGTTTCACAACAAAGGCTTTCTTC
778 AAACACATTTTCCTCATTAGGATACATGATATTAATGCTTTGCTTTCACAACAAAGGCTTTCTTC
* *
1333471 CAACCTATTGTTGTAAAGTC-TAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTACTAATGA
843 CAACCGATTGTTGTAAAGTCTTAAGTTCGCGCCTCAAATGAGACAAATATGGATTCTACTAATGA
*
1333535 TTTTCATTCTTCACGTGATTTGGCACTATAAAAACATTTTCCTCT
908 TCTTCATTCTTCACGTGATTTGGCACTATAAAAACATTTTCCTCT
* * * * *
1333580 TTAGGATACATGATA-TTAATGCTTTGGTTTCGTAACAAAGGCTTTCTTCCCGCCAATTGTTGTA
1 TTAGGATACATGATATTTAAT-CTTTGGTTTCGCAACAAAGGCTTCCCTCCCACCAATTGTTGAA
* * * *
1333644 AAGTATAAG-TTT-GTGCCTTAAATGAGACTAATATGGATTCTACTAATGATTTTCATTCTTTTT
65 AAGTATAAGTTTTCGTGCCTCAAATGAGACAAACATGGATTCT-CTAATAATTTTCATTCTTTTT
* * *
1333707 GTGATTTACCACTATAAAAAGATTTTT-CTCTTTAGGATACATGATATTAATGCTTTGGTTTGGT
129 GTGATTTACCACTATAAAAA-ATTTTTCCTCATTAGGATACATGATATTAATGCTTTGATTTGGC
* * *
1333771 AACAAAGGCTTTCTTCCCCCCAATTGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATGT
193 AACAAAGGCTTTCTTCCCACCAATTGTTATAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATAT
* * * * * *
1333836 GGATTCTAGTATTGATCAT-CATTCTTTTTGTGATAAGGCACTATAAACATATTCTCCGCATTAG
258 GGATTCTAGTAATGATC-TCCAATCTTTTTGTGATAAGGCACTATAAACACAATCCCCGCATTAC
** * * *
1333900 GATAATTGACATTGACGCTTTTCTTTTGCATGGAAATCTTTTCTTTGCCCAATTATCCTTAAAAT
322 GATAAAAGACATTGAAGCTTTTCTTTTGCATGAAAATCTTTTCTTTCCCCAATTATCCTTAAAAT
* *
1333965 CAAAGTTCTTCCCTTGAATAAGACAATCATCGATTCTCTTAACAGTCTCCATTTTTTTCAAGATT
387 CAAAGTTCTTCCCTTGAATAAGACAAGCATCGATTCTCCTAACAGTCTCCATTTTTTTCAAGATT
**
1334030 GGGAAGCCAAAACACATTGCCTTCGTTAGGATACACGACATTGATGCTATGGTGTCGCAAGAAAA
452 GGGAAGCCAAAACACATTGCCTTCGTTAGGATACACGACATTGATGCTATGGTGTCAAAAGAAAA
*
1334095 GCGTTTCTTCCCACCATTTTTGATTGAATCAAAGGTTGTCTCTTAAATAAGAAAGACATGAATAC
517 GCGTTTCTTCCCACCATTTTTGATAGAATCAAAGGTTGTCTCTTAAATAAGAAAGACATGAATAC
1334160 TCACACTAATCCCCATTCCTTTCAGGGTTAGGCACCATAAACATAGTCTTCTCATTAGGATACAT
582 TCACACTAATCCCCATTCCTTTCAGGGTTAGGCACCATAAACATAGTCTTCTCATTAGGATACAT
* * *
1334225 GATATTGAAGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTC
647 CATACTGAAGCATTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTC
* * * *
1334290 ATGCCTCAAATGTGACAAACATGGATTCTACTAATGATTTTCGTTCTTTTTGTGATTTGGCACTA
712 ATGACTCAAATGCGACAAACATGGATTCTACTAATGATTTTCATTCTTTTTGTGATTTGGCACAA
* *
1334355 TAAACACATTTTCCTCATTAGGATATATGATATTAATGCTTTGCTTTCGCAACAAAGGCTTTCTT
777 TAAACACATTTTCCTCATTAGGATACATGATATTAATGCTTTGCTTTCACAACAAAGGCTTTCTT
* *
1334420 CCCACCGATTGTTGTAAAGTCTTAAGTTCGCGCCTCAAATGAGACAAATATGGATTCTAGTAATG
842 CCAACCGATTGTTGTAAAGTCTTAAGTTCGCGCCTCAAATGAGACAAATATGGATTCTACTAATG
1334485 ATCTTCATTC
907 ATCTTCATTC
1334495 GTTTTGTGAT
Statistics
Matches: 827, Mismatches: 80, Indels: 16
0.90 0.09 0.02
Matches are distributed among these distances:
949 29 0.04
950 684 0.83
951 114 0.14
ACGTcount: A:0.29, C:0.19, G:0.15, T:0.36
Consensus pattern (952 bp):
TTAGGATACATGATATTTAATCTTTGGTTTCGCAACAAAGGCTTCCCTCCCACCAATTGTTGAAA
AGTATAAGTTTTCGTGCCTCAAATGAGACAAACATGGATTCTCTAATAATTTTCATTCTTTTTGT
GATTTACCACTATAAAAAATTTTTCCTCATTAGGATACATGATATTAATGCTTTGATTTGGCAAC
AAAGGCTTTCTTCCCACCAATTGTTATAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGA
TTCTAGTAATGATCTCCAATCTTTTTGTGATAAGGCACTATAAACACAATCCCCGCATTACGATA
AAAGACATTGAAGCTTTTCTTTTGCATGAAAATCTTTTCTTTCCCCAATTATCCTTAAAATCAAA
GTTCTTCCCTTGAATAAGACAAGCATCGATTCTCCTAACAGTCTCCATTTTTTTCAAGATTGGGA
AGCCAAAACACATTGCCTTCGTTAGGATACACGACATTGATGCTATGGTGTCAAAAGAAAAGCGT
TTCTTCCCACCATTTTTGATAGAATCAAAGGTTGTCTCTTAAATAAGAAAGACATGAATACTCAC
ACTAATCCCCATTCCTTTCAGGGTTAGGCACCATAAACATAGTCTTCTCATTAGGATACATCATA
CTGAAGCATTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGA
CTCAAATGCGACAAACATGGATTCTACTAATGATTTTCATTCTTTTTGTGATTTGGCACAATAAA
CACATTTTCCTCATTAGGATACATGATATTAATGCTTTGCTTTCACAACAAAGGCTTTCTTCCAA
CCGATTGTTGTAAAGTCTTAAGTTCGCGCCTCAAATGAGACAAATATGGATTCTACTAATGATCT
TCATTCTTCACGTGATTTGGCACTATAAAAACATTTTCCTCT
Found at i:1334673 original size:635 final size:633
Alignment explanation
Indices: 1333580--1335791 Score: 3383
Period size: 635 Copynumber: 3.5 Consensus size: 633
1333570 ATTTTCCTCT
* *
1333580 TTAGGATACATGATATT-AATGCTTTGGTTTCGTAACAAAGGCTTTCTTCCCGCCAATTGTTGTA
1 TTAGGATACATGATATTGAA-GCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTGTTGTA
* ** * * * *
1333644 AAGTATAAGTTTGTGCCTTAAATGAGACTAATATGGATTCTACTAATGATTTTCATTCTTTTTGT
65 AAGTCTAAGTTCATGCCTCAAATGCGACAAACATGGATTCTACTAATGATTTTCATTCTTTTTGT
** * * * * * *
1333709 GATTTACCACTATAAAAAGATTTTTCTCTTTAGGATACATGATATTAATGCTTTGGTTTGGTAAC
130 GATTTGGCACTATAAACACATTTTCCTCATTAGGATACATGATATTAATGCTTTGGTTTCGCAAC
* *
1333774 AAAGGCTTTCTTCCCCCCAATTGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATGTGGA
195 AAAGGCTTTCTTCCCACCAATTGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGA
* * * *
1333839 TTCTAGTATTGATCATCATTCTTTTTGTGATAAGGCACTATAAACATATTCTCCGCATTAGGATA
260 TTCTAGTAATGATCTTCATTCTTTTTGTGATATGGCACTATAAACACATTCTCCGCATTAGGATA
* * * *
1333904 ATTGACATTGACGCTTTTCTTTTGCATGGAAATCTTTTCTTTGCCCAATTATCCTTAAAATCAAA
325 ATTGACATTGATGTTTTTCTTTTGCATGAAAACCTTTTCTTTGCCCAATTATCCTTAAAATCAAA
* *
1333969 GTTCTTCCCTTGAATAAGACAATCATCGATTCTCTTAACAGTCTCCATTTTTTTCAAGATTGGGA
390 GTTCTTCCCTTGAATAAGACAAGCATCGATTCTCCTAACAGTCTCCATTTTTTTCAAGATTGGGA
* * * *
1334034 AGCCAAAACACATTGCCTTCGTTAGGATACACGACATTGATGCTATGGTGTCGCAAGAAAAGCGT
455 AGCCAAAACACATTGCCTTCGTTAGGATGCACGACATTGATGCTTTGG-GTCACAAGAAAAGCTT
** * * * * * *
1334099 TTCTTCCCACCATTTTTGATTGAATCAAAGGTTGTCTCTTAAATAAGA-AAGACATGAATACTCA
519 TTCTTCCTGCCGTTTTTGATAGAATCCAAGTTTTTCTCTTAAATAAGACTA-ACATGAATACTCA
1334163 CACTAATCCCCATTCCTTTCAGGGTTAGGCACCATAAACATAGTCTTCTCA
583 CACTAATCCCCATTCCTTTCAGGGTTAGGCACCATAAACATAGTCTTCTCA
*
1334214 TTAGGATACATGATATTGAAGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTTTTGTAA
1 TTAGGATACATGATATTGAAGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTGTTGTAA
* *
1334279 AGTCTAAGTTCATGCCTCAAATGTGACAAACATGGATTCTACTAATGATTTTCGTTCTTTTTGTG
66 AGTCTAAGTTCATGCCTCAAATGCGACAAACATGGATTCTACTAATGATTTTCATTCTTTTTGTG
* *
1334344 ATTTGGCACTATAAACACATTTTCCTCATTAGGATATATGATATTAATGCTTTGCTTTCGCAACA
131 ATTTGGCACTATAAACACATTTTCCTCATTAGGATACATGATATTAATGCTTTGGTTTCGCAACA
* *
1334409 AAGGCTTTCTTCCCACCGATTGTTGTAAAGTCTTAAGTTCGCGCCTCAAATGAGACAAATATGGA
196 AAGGCTTTCTTCCCACCAATTGTTGTAAAGTC-TAAGTTCGTGCCTCAAATGAGACAAATATGGA
* * *
1334474 TTCTAGTAATGATCTTCATTCGTTTTGTGATATGGCACTATGAACACATTCTCCGCATTAGGAAA
260 TTCTAGTAATGATCTTCATTCTTTTTGTGATATGGCACTATAAACACATTCTCCGCATTAGGATA
* *
1334539 ATTGGCATTGATATTTTTCTTTTGCATGAAAACCTTTTCTTTGCCCAATTATCCTTAAAATCAAA
325 ATTGACATTGATGTTTTTCTTTTGCATGAAAACCTTTTCTTTGCCCAATTATCCTTAAAATCAAA
* *
1334604 GTTCTTCCCTTGAAAAAGACAAGCATCGATTATCCTAACAGTCTCCATTTTTTTCAAGATTGGGA
390 GTTCTTCCCTTGAATAAGACAAGCATCGATTCTCCTAACAGTCTCCATTTTTTTCAAGATTGGGA
* *
1334669 AGCCAAAACACATTGCCTTCTTTAGGATGCACGACATTGATGCTTTGAGGTCACAAGGAAAGCTT
455 AGCCAAAACACATTGCCTTCGTTAGGATGCACGACATTGATGCTTTG-GGTCACAAGAAAAGCTT
* * * * *
1334734 TTCTTTCTGTCGTTTTTGATAGAATCCAACTTTTTCTGTTAAATAAGACTAACATGAATACTCGC
519 TTCTTCCTGCCGTTTTTGATAGAATCCAAGTTTTTCTCTTAAATAAGACTAACATGAATACTCAC
* *
1334799 ACTAATCCCCATTCCTTTCAGGATTAGGCTCCATAAACATAGTCTTCTCA
584 ACTAATCCCCATTCCTTTCAGGGTTAGGCACCATAAACATAGTCTTCTCA
*
1334849 TTAGGATACATGATATTGAAGCTTTGGTTTCGCAACAAAGGTTTTCTTCCCACCAATTGTTGTAA
1 TTAGGATACATGATATTGAAGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTGTTGTAA
*
1334914 ATTCTAAGTTCATGCCTCAAATGCGACAAACATGGATTCTACTAATGATTTTCATTCTTTTTGTG
66 AGTCTAAGTTCATGCCTCAAATGCGACAAACATGGATTCTACTAATGATTTTCATTCTTTTTGTG
* * *
1334979 ATTTGGCACTATAAACACATTTTCCTCATTATGATATATGATATTAATGCTTTGGTTTCACAACA
131 ATTTGGCACTATAAACACATTTTCCTCATTAGGATACATGATATTAATGCTTTGGTTTCGCAACA
1335044 AAGGCTTTCTTCCCACCAATTGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGAT
196 AAGGCTTTCTTCCCACCAATTGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGAT
*
1335109 TCTAGTAATGATCTTCATTCTTTTTGTGATATGGCACTATAAACACATTCTCCGCATTTGGATAA
261 TCTAGTAATGATCTTCATTCTTTTTGTGATATGGCACTATAAACACATTCTCCGCATTAGGATAA
* * *
1335174 CTGACATTGATGTTTTTTTTTTGCATGAAAACCTTTTCTTTTCCCCAATTATCCTTAAAATCAAA
326 TTGACATTGATGTTTTTCTTTTGCATGAAAACCTTTTC-TTTGCCCAATTATCCTTAAAATCAAA
**
1335239 GTTCTTCCCTTTTATAAGACAAGCATCGATTCTCCTAACAGTCTCCATTTTTTTCAAGATTGGGA
390 GTTCTTCCCTTGAATAAGACAAGCATCGATTCTCCTAACAGTCTCCATTTTTTTCAAGATTGGGA
* *
1335304 AGCCAAAACACATTGCCTTCGTTAGGATGCATGACGTTGATGCTTTGGGGTCACAAGAAAAGCTT
455 AGCCAAAACACATTGCCTTCGTTAGGATGCACGACATTGATGCTTT-GGGTCACAAGAAAAGCTT
*
1335369 TTCTTCCTGCCGTTTTTGATAGAATCCAAGTTTTTCTCTTAAATAAGACTAACATGAATACTCAT
519 TTCTTCCTGCCGTTTTTGATAGAATCCAAGTTTTTCTCTTAAATAAGACTAACATGAATACTCAC
* * *
1335434 ACTAATCCCC-TTCTTTTCAGGGTTAGGTACCATAAATATAGTCTTCTCA
584 ACTAATCCCCATTCCTTTCAGGGTTAGGCACCATAAACATAGTCTTCTCA
* * * * *
1335483 TTAGGATACATGATAATGAAGCATTGGTCTT-GCAACAATGGCTTTCTTCCCACCAGTTTTTGTA
1 TTAGGATACATGATATTGAAGCTTTGGT-TTCGCAACAAAGGCTTTCTTCCCACCAATTGTTGTA
* * *
1335547 AAGTCTAAGTTCATGCCTCAATTGCGGCAAACATGGATTCTA-TGGATGATTTTCATTCTTTTTG
65 AAGTCTAAGTTCATGCCTCAAATGCGACAAACATGGATTCTACT-AATGATTTTCATTCTTTTTG
*
1335611 TGATTTGGCACAATAAACACATTTTCCTCATTAGGATACATGATATTAATGCTTTGGTTTCGCAA
129 TGATTTGGCACTATAAACACATTTTCCTCATTAGGATACATGATATTAATGCTTTGGTTTCGCAA
* * *
1335676 CAAAGGCTTTCTTCCAACCAGTTGTTATAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGG
194 CAAAGGCTTTCTTCCCACCAATTGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGG
* * * * ** * *
1335741 ATTGTACTAATGATTTTTATTCTTTACGTGAT-TGGGGACTATAAAAACATT
259 ATTCTAGTAATGATCTTCATTCTTTTTGTGATAT-GGCACTATAAACACATT
1335792 TCCCTCTTTA
Statistics
Matches: 1443, Mismatches: 126, Indels: 18
0.91 0.08 0.01
Matches are distributed among these distances:
633 2 0.00
634 639 0.44
635 799 0.55
636 3 0.00
ACGTcount: A:0.29, C:0.19, G:0.15, T:0.37
Consensus pattern (633 bp):
TTAGGATACATGATATTGAAGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTGTTGTAA
AGTCTAAGTTCATGCCTCAAATGCGACAAACATGGATTCTACTAATGATTTTCATTCTTTTTGTG
ATTTGGCACTATAAACACATTTTCCTCATTAGGATACATGATATTAATGCTTTGGTTTCGCAACA
AAGGCTTTCTTCCCACCAATTGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGAT
TCTAGTAATGATCTTCATTCTTTTTGTGATATGGCACTATAAACACATTCTCCGCATTAGGATAA
TTGACATTGATGTTTTTCTTTTGCATGAAAACCTTTTCTTTGCCCAATTATCCTTAAAATCAAAG
TTCTTCCCTTGAATAAGACAAGCATCGATTCTCCTAACAGTCTCCATTTTTTTCAAGATTGGGAA
GCCAAAACACATTGCCTTCGTTAGGATGCACGACATTGATGCTTTGGGTCACAAGAAAAGCTTTT
CTTCCTGCCGTTTTTGATAGAATCCAAGTTTTTCTCTTAAATAAGACTAACATGAATACTCACAC
TAATCCCCATTCCTTTCAGGGTTAGGCACCATAAACATAGTCTTCTCA
Found at i:1336062 original size:158 final size:157
Alignment explanation
Indices: 1332629--1336088 Score: 1949
Period size: 158 Copynumber: 21.8 Consensus size: 157
1332619 AGTCTTCTCG
* * * * * *
1332629 TTAGGATACATGATATTTAAT-CTTTGGTTTTGCAACAAAGGCTTCCCTCCCACCAGTTTTTGAA
1 TTAGGATACATGATA-TT-ATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTGTTGTA
* * * *
1332693 AAGTCTAAGTTTTCTTGCCTCAAATGCGACAAACATGGATTCT-CTAATAATTTTCATTCTTTTT
64 AAGTCTAAG--TTCGTGCCTCAAATGAGACAAACATGGATTCTACTAATGATCTTCATTCTTTTT
* *
1332757 TTGATTTGGCACTATAAACACTTTTTCCTCA
127 GTGATTTGGCACTATAAACACATTTTCCTCA
* * *
1332788 TTAGGATACATGATATTAATGCTTTGATTTGGCAACAAAGGCTTTCTTCCCACCAATTGTTATAA
1 TTAGGATACATGATATT-ATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTGTTGTAA
* * * *
1332853 AGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTCCAATCTTTTTGTG
65 AGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTACTAATGATCTTCATTCTTTTTGTG
** * **
1332918 ATAAGGCACTATAAACACAATCCCCTCA
130 ATTTGGCACTATAAACACATTTTCCTCA
* * * * * * ** * ** ** * * *
1332946 TTACGATAAAAGACATTGAAGTTTTTCTTTTGCATGAAAATCTTTTCTTTCC-CCTATT-TTCCT
1 TTAGGATACATGATATT-ATGCTTTGGTTTCGCAACAAAGGC-TTTCTTCCCACCAATTGTT--G
* ** * * ** * * * * *
1333009 TAAAATGAAAGTTCTTCCCTTGAATAAGACAAGCATCGATTCTCCTAA-CAGTC-TCTATT-TTT
62 TAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTACTAATGA-TCTTC-ATTCTTT
** * * * * *
1333071 TTCAAGATTGGGAAGCCA-AAACACA-TTGCCTTCG
125 TT-GTGATTTGGCA-CTATAAACACATTTTCC-TCA
* * * ** * * ** * *
1333105 TTAGGATGCATGACATTGATGCTTTAGG-GTCAAAAGGAAA-GCTTTTCTTCCCGCCGTTTTTTA
1 TTAGGATACATGATATT-ATGCTTT-GGTTTCGCAA-CAAAGGC-TTTCTTCCCACCAATTGTTG
* * * * * * * * * * **
1333168 TAGAA-TCCAAGTT-TTTCTCTTAAATAAGACTAACATGAATACTCAC-ACTAATCCCCATTCTT
62 TA-AAGTCTAAGTTCGTGC-CTCAAATGAGACAAACATGGATTCT-ACTAATGATCTTCATTCTT
* * * * * * * *
1333230 TTCAG-GGTTAGGTACCATAAATATAGTCTT-CTCA
124 TT-TGTGATTTGGCACTATAAACACA-TTTTCCTCA
* * * * * *
1333264 TTAGGATACATCATACTGAAGCATTGGTCTT-GCAACAAAGGCTTTCTTCCCACCAGTTTTTGTA
1 TTAGGATACATGATA-TTATGCTTTGGT-TTCGCAACAAAGGCTTTCTTCCCACCAATTGTTGTA
* * * * *
1333328 AAGTCTAAGTTCATGACTCAAATGCGACAAACATGGATTCTACTGATGATTTTCATTCTTTTTGT
64 AAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTACTAATGATCTTCATTCTTTTTGT
*
1333393 GATTTGGCACAATAAACACATTTTCCTCA
129 GATTTGGCACTATAAACACATTTTCCTCA
* * *
1333422 TTAGGATACATGATATTAATGCTTTGGTTTCACAACAAAGGCTTTCTTCCAACCTATTGTTGTAA
1 TTAGGATACATGATATT-ATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTGTTGTAA
* * ***
1333487 AGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTACTAATGATTTTCATTCTTCACGTG
65 AGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTACTAATGATCTTCATTCTTTTTGTG
* *
1333552 ATTTGGCACTATAAAAACATTTTCCTCT
130 ATTTGGCACTATAAACACATTTTCCTCA
* *
1333580 TTAGGATACATGATATTAATGCTTTGGTTTCGTAACAAAGGCTTTCTTCCCGCCAATTGTTGTAA
1 TTAGGATACATGATATT-ATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTGTTGTAA
* * * * * *
1333645 AGTATAAGTTTGTGCCTTAAATGAGACTAATATGGATTCTACTAATGATTTTCATTCTTTTTGTG
65 AGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTACTAATGATCTTCATTCTTTTTGTG
** * * * *
1333710 ATTTACCACTATAAAAAGATTTTTCTCT
130 ATTTGGCACTATAAACACATTTTCCTCA
* * *
1333738 TTAGGATACATGATATTAATGCTTTGGTTTGGTAACAAAGGCTTTCTTCCCCCCAATTGTTGTAA
1 TTAGGATACATGATATT-ATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTGTTGTAA
** * * *
1333803 AGTCTAAGTTCGTGCCTCAAATGAGACAAATGTGGATTCTAGTATTGATCATCATTCTTTTTGTG
65 AGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTACTAATGATCTTCATTCTTTTTGTG
** * * *
1333868 ATAAGGCACTATAAACATATTCTCCGCA
130 ATTTGGCACTATAAACACATTTTCCTCA
* * ** * ** * ** *
1333896 TTAGGATA-ATTGACATTGACGCTTTTCTTTTGCATGGAAA-TCTTTTCTTTGC-CCAATTATCC
1 TTAGGATACA-TGATATT-ATGCTTTGGTTTCGCA-ACAAAGGC-TTTCTTCCCACCAATTGT--
* * * * ** * * * * *
1333958 T-TAAAATCAAAGTTCTTCCCTTGAATAAGACAATCATCGATTCT-CTTAA-CAGTCTCCATT-T
60 TGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAC-TAATGA-TCTTCATTCT
** * * * * *
1334019 TTTTCAAGATTGGGAAGCCA-AAACACA-TTGCCTTCG
123 TTTT-GTGATTTGGCA-CTATAAACACATTTTCC-TCA
* * * * * * *
1334055 TTAGGATACACGACATTGATGCTATGGTGTCGCAAGAAAAGCGTTTCTTCCCACC-ATTTTTGAT
1 TTAGGATACATGATATT-ATGCTTTGGTTTCGCAACAAAGGC-TTTCTTCCCACCAATTGTTG--
* * * * * * * * **
1334119 TGAA-TCAAAGGTT-GT-CTCTTAAATAAGA-AAGACATGAATACTCAC-ACTAATCCCCATTCC
62 TAAAGTCTAA-GTTCGTGC-CTCAAATGAGACAA-ACATGGATTCT-ACTAATGATCTTCATT-C
** * * * * *
1334179 TTTCAG-GGTTAGGCACCATAAACATAGTCTT-CTCA
122 TTTTTGTGATTTGGCACTATAAACACA-TTTTCCTCA
* *
1334214 TTAGGATACATGATATTGAAGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTTTTGTAA
1 TTAGGATACATGATATT-ATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTGTTGTAA
* * * *
1334279 AGTCTAAGTTCATGCCTCAAATGTGACAAACATGGATTCTACTAATGATTTTCGTTCTTTTTGTG
65 AGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTACTAATGATCTTCATTCTTTTTGTG
1334344 ATTTGGCACTATAAACACATTTTCCTCA
130 ATTTGGCACTATAAACACATTTTCCTCA
* * *
1334372 TTAGGATATATGATATTAATGCTTTGCTTTCGCAACAAAGGCTTTCTTCCCACCGATTGTTGTAA
1 TTAGGATACATGATATT-ATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTGTTGTAA
* * * *
1334437 AGTCTTAAGTTCGCGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATTCGTTTTGT
65 AGTC-TAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTACTAATGATCTTCATTCTTTTTGT
* * * *
1334502 GATATGGCACTATGAACACATTCTCCGCA
129 GATTTGGCACTATAAACACATTTTCCTCA
* ** ** ** * ** ** ** *
1334531 TTAGGA-AAATTGGCATTGATATTTTTCTTTTGCATGAAAACCTTTTCTTTGC-CCAATTATCCT
1 TTAGGATACA-TGATATT-ATGCTTTGGTTTCGCAACAAAGGC-TTTCTTCCCACCAATTGT--T
* * * * * * * * * * * *
1334594 -TAAAATCAAAGTTCTTCCCTTGAAA-AAGACAAGCATCGATTATCCTAA-CAGTCTCCATT-TT
61 GTAAAGTCTAAGTTCGTGCC-TCAAATGAGACAAACATGGATTCTACTAATGA-TCTTCATTCTT
** * * * * *
1334655 TTTCAAGATTGGGAAGCCA-AAACACA-TTGCCTTCT
124 TTT-GTGATTTGGCA-CTATAAACACATTTTCC-TCA
* * * * * * * *** * *
1334690 TTAGGATGCACGACATTGATGCTTTGAG-GTCACAAGGAAA-GCTTTTCTTTCTGTC-GTTTTTG
1 TTAGGATACATGATATT-ATGCTTTG-GTTTCGCAA-CAAAGGC-TTTCTTCCCACCAATTGTTG
* * * * * * * * * * * * * **
1334752 ATAGAA-TCCAACTT-TTTCTGTTAAATAAGACTAACATGAATACT-CGCACTAATCCCCATTCC
62 -TA-AAGTCTAAGTTCGTGC-CTCAAATGAGACAAACATGGATTCTAC-TAATGATCTTCATT-C
** * * * * *
1334814 TTTCAG-GATTAGGCTCCATAAACATAGTCTT-CTCA
122 TTTTTGTGATTTGGCACTATAAACACA-TTTTCCTCA
* *
1334849 TTAGGATACATGATATTGAAGCTTTGGTTTCGCAACAAAGGTTTTCTTCCCACCAATTGTTGTAA
1 TTAGGATACATGATATT-ATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTGTTGTAA
* * * *
1334914 ATTCTAAGTTCATGCCTCAAATGCGACAAACATGGATTCTACTAATGATTTTCATTCTTTTTGTG
65 AGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTACTAATGATCTTCATTCTTTTTGTG
1334979 ATTTGGCACTATAAACACATTTTCCTCA
130 ATTTGGCACTATAAACACATTTTCCTCA
* * *
1335007 TTATGATATATGATATTAATGCTTTGGTTTCACAACAAAGGCTTTCTTCCCACCAATTGTTGTAA
1 TTAGGATACATGATATT-ATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTGTTGTAA
* *
1335072 AGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATTCTTTTTGTG
65 AGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTACTAATGATCTTCATTCTTTTTGTG
* * *
1335137 ATATGGCACTATAAACACATTCTCCGCA
130 ATTTGGCACTATAAACACATTTTCCTCA
* * * ** * ** ** * *
1335165 TTTGGATA-ACTGACATTGATGTTTTTTTTTTGCATGAAAACCTTTTCTTTTCC-CCAATTATCC
1 TTAGGATACA-TGATATT-ATGCTTTGGTTTCGCAACAAAGGC-TTTC-TTCCCACCAATTGT--
* * * * *** * * * * * *
1335228 T-TAAAATCAAAGTTCTTCCCTTTTATAAGACAAGCATCGATTCTCCTAA-CAGTCTCCATT-TT
60 TGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTACTAATGA-TCTTCATTCTT
** * * * * *
1335290 TTTCAAGATTGGGAAGCCA-AAACACA-TTGCCTTCG
124 TTT-GTGATTTGGCA-CTATAAACACATTTTCC-TCA
* ** ** * * * ** * *
1335325 TTAGGATGCATGACGTTGATGCTTTGGGGTCACAAGAAAAGCTTTTCTTCCTGCC-GTTTTTGAT
1 TTAGGATACATGATATT-ATGCTTTGGTTTCGCAACAAAGGC-TTTCTTCCCACCAATTGTTG-T
* * * * * * * * * * * *
1335389 AGAA-TCCAAGTT-TTTCTCTTAAATAAGACTAACATGAATACT-CATACTAATC-CCCTTCTTT
63 A-AAGTCTAAGTTCGTGC-CTCAAATGAGACAAACATGGATTCTAC-TAATGATCTTCATTCTTT
* * * * * * * *
1335450 TCAG-GGTTAGGTACCATAAATATAGTCTT-CTCA
125 T-TGTGATTTGGCACTATAAACACA-TTTTCCTCA
* * * * * *
1335483 TTAGGATACATGATAATGAAGCATTGGTCTT-GCAACAATGGCTTTCTTCCCACCAGTTTTTGTA
1 TTAGGATACATGAT-ATTATGCTTTGGT-TTCGCAACAAAGGCTTTCTTCCCACCAATTGTTGTA
* * * * * *
1335547 AAGTCTAAGTTCATGCCTCAATTGCGGCAAACATGGATTCTA-TGGATGATTTTCATTCTTTTTG
64 AAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTACT-AATGATCTTCATTCTTTTTG
*
1335611 TGATTTGGCACAATAAACACATTTTCCTCA
128 TGATTTGGCACTATAAACACATTTTCCTCA
* * *
1335641 TTAGGATACATGATATTAATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCAACCAGTTGTTATAA
1 TTAGGATACATGATATT-ATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTGTTGTAA
* * * * **
1335706 AGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTGTACTAATGATTTTTATTCTTTACGTG
65 AGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTACTAATGATCTTCATTCTTTTTGTG
* * * * *
1335771 ATTGGGGACTATAAAAACATTTCCCTCT
130 ATTTGGCACTATAAACACATTTTCCTCA
* *
1335799 TTAGGATACATGATATTAATGCTTTGGTTTCGTAACAAAGGCTTTCTTCCCACCAATTGTTGCAA
1 TTAGGATACATGATATT-ATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTGTTGTAA
* * * * *
1335864 AGTATAAGTTTGTGCCTCAAATGAGACCAATATGGATTCTACTAATGATTTTCATTCTTTTTGTG
65 AGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTACTAATGATCTTCATTCTTTTTGTG
* * *
1335929 ATTTGGCACTATAAAAAGATTTTCCTCT
130 ATTTGGCACTATAAACACATTTTCCTCA
* * * *
1335957 TTAGGATACATGATATTATTGCTTTGGTTTGGTAACAAAGGCTTTCATCCCCCCAATTGTTGTAA
1 TTAGGATACATGATATTA-TGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTGTTGTAA
* ** * * * *
1336022 AGTCTAAGTTCGTGCCTCAAATGAGAAAAATGTGGATTCTAGTATTGATCATCATTCTTTTTCTG
65 AGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTACTAATGATCTTCATTCTTTTTGTG
1336087 AT
130 AT
1336089 AAGGCTGATG
Statistics
Matches: 2532, Mismatches: 629, Indels: 281
0.74 0.18 0.08
Matches are distributed among these distances:
156 3 0.00
157 124 0.05
158 1485 0.59
159 739 0.29
160 164 0.06
161 17 0.01
ACGTcount: A:0.29, C:0.19, G:0.15, T:0.37
Consensus pattern (157 bp):
TTAGGATACATGATATTATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTGTTGTAAA
GTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTACTAATGATCTTCATTCTTTTTGTGA
TTTGGCACTATAAACACATTTTCCTCA
Found at i:1340194 original size:158 final size:158
Alignment explanation
Indices: 1339847--1340182 Score: 449
Period size: 158 Copynumber: 2.1 Consensus size: 158
1339837 TTTCAGGTTA
* * * * *
1339847 GGCACCATAAACATAGTCTTCTCATTAGGATACATGATATTGAAGCTTTGGTTTCGCAACAAAGG
1 GGCACTATAAACACATTCTCCTCATTAGGATACATGATATTGAAGCTTTGGTTTCACAACAAAGG
* ** *
1339912 CTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGTGACAAACATGGATTCTA
66 CCTTCTTCCCACCAATTGATGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTA
** * * *
1339977 CTAATGATTTTCGTTCTTTTTGTGATTT
131 CTAACAATCTTCATTCTTTTTGTGATAT
* * *
1340005 GGCACTATAAACACATTTTCCTCATTAGGATATATGATATT-AATGCTTTGGTTTCACAATAAAG
1 GGCACTATAAACACATTCTCCTCATTAGGATACATGATATTGAA-GCTTTGGTTTCACAACAAAG
* ** *
1340069 GCCTTCTTCCCACCGATTGATGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAATATGGATTCT
65 GCCTTCTTCCCACCAATTGATGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCT
*
1340134 AGTAACAATCTTCATTCTTTTTGTGATAT
130 ACTAACAATCTTCATTCTTTTTGTGATAT
*
1340163 GGCACTATGAACACATTCTC
1 GGCACTATAAACACATTCTC
1340183 TACGTTAGGA
Statistics
Matches: 153, Mismatches: 24, Indels: 2
0.85 0.13 0.01
Matches are distributed among these distances:
157 2 0.01
158 151 0.99
ACGTcount: A:0.29, C:0.19, G:0.15, T:0.36
Consensus pattern (158 bp):
GGCACTATAAACACATTCTCCTCATTAGGATACATGATATTGAAGCTTTGGTTTCACAACAAAGG
CCTTCTTCCCACCAATTGATGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTA
CTAACAATCTTCATTCTTTTTGTGATAT
Found at i:1340814 original size:636 final size:633
Alignment explanation
Indices: 1339536--1340830 Score: 1490
Period size: 636 Copynumber: 2.0 Consensus size: 633
1339526 CAAAGGCACT
** * * * ** *
1339536 ATAAACACATTCTCCGCATTAGGATAATTGACATTGATGCTTTTCTTTTGCATGGTAATCTTTTC
1 ATAAACACATTCTCTACGTTAGGATAATTAACATTGACGCTTTTCTTTTGCATGAAAACCTTTTC
* * *
1339601 TTTGCCCAATTATCCTTAAAATTAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCCTAAC
66 TTTGCCCAATTATCCTCAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCATAAC
* ** * *
1339666 ATTCTCCATTTTTTCCATGATTGGGAAGCCAAAACACATTGCCTTCGTTAGGATACACGACATTG
131 AGTCTCCATCATTTCCAAGATTGGGAAGCCAAAACACATTGCCTTCGTTAGAATACACGACATTG
1339731 ATGCTATGGTGTCGCAAGAAAAGCGTTTCTTCCCACCATTTTTGATTGAATCAAAGGTTGTCTCT
196 ATGCTATGGTGTCGCAAGAAAAGCGTTTCTTCCCACCATTTTTGATTGAATCAAAGGTTGTCTCT
* ** *
1339796 TAAATAAGAAAGACATGAATACTCACACTAATCCCCATTCCTTTCAGGTTAGGCACCATAAACAT
261 TAAATAAGAAAGACATCAATACTCACAAAAATCCCCATTCCTTTCAGATTAGGCACCATAAACAT
1339861 AGTCTTCTCATTAGGATACATGATATTGAAGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCA
326 AGTCTTCTCATTAGGATACATGATATTGAAGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCA
* * ** *
1339926 ATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGTGACAAACATGGATTCTACTAATGATTTTCGT
391 ATTGTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTACTAATGATCATCAT
** * * * *
1339991 TCTTTTTGTGATTTGGCACTATAAACACATTTTCCTCATTAGGATATATGATATTAATGCTTTGG
456 TCTTTTTGTGATCAGGCACTATAAACACATTCTCCGCATTAGGATATATGACATTAATGCTTTGC
* * ** * *
1340056 TTTCACAATAAAGGCCTTCTTCCCACCGATTGATGTAAAGTCTAAGTTTGTGCCTCAAATGAGAC
521 TTTCACAATAAAGGCCTTCTTCCCACCAATTGATGTAAAATCTAAGTTCATCCCTCAAATAAGAC
* * ** * *** * *
1340121 AAATATGGATTCTAGTAACAATCTTCATTCTTTTTGTGATATGGCACT
586 AAACATCGATTCTACAAACAATCTCCATTCTTTTCAAGATATGGAACC
* *
1340169 ATGAACACATTCTCTACGTTAGGATAATTAACATTGACGTTTTTCTTTTGCATGAAAACCTTTTC
1 ATAAACACATTCTCTACGTTAGGATAATTAACATTGACGCTTTTCTTTTGCATGAAAACCTTTTC
* * *
1340234 TTTGCCCAATTATCCTCGAAATGAAAGTTCATCCCTTGAATAAGACAAGCCTC-ACTTCTGATAA
66 TTTGCCCAATTATCCTCAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGA-TTCTCATAA
* * * * * *
1340298 TAGTCTCCACTCATTT-CAAGATTGGGAAGCCAAAACACTTTGCTTTTGTTCGAATACCCGACAT
130 CAGTCTCCA-TCATTTCCAAGATTGGGAAGCCAAAACACATTGCCTTCGTTAGAATACACGACAT
* * * * *
1340362 TGATGCT-TCAGGTGTCGCAAGAAATGCTTTTTTTCCCTCCATTTTTGATTGAATCAAAGTTTGT
194 TGATGCTAT--GGTGTCGCAAGAAAAGCGTTTCTTCCCACCATTTTTGATTGAATCAAAGGTTGT
* *
1340426 CTCTTAAATAAGACAA-ACATCAATACTCACAAAAAATCCCTATTCTTTTCTAGATTAGGCACCA
257 CTCTTAAATAAGA-AAGACATCAATACTCAC-AAAAATCCCCATTCCTTTC-AGATTAGGCACCA
*
1340490 TAAACATAGTCTTCTCATTAGGATACATGATATTGAAGCTTTGGTTTTGCAACAAAGG-TTCTCT
319 TAAACATAGTCTTCTCATTAGGATACATGATATTGAAGCTTTGGTTTCGCAACAAAGGCTT-TCT
* * ** *
1340554 TCCCACCAATTGTTGTAAAGTCTCAA-TT-AGTGCCTCAAATGAGACATATATGGATTCTGGTAT
383 TCCCACCAATTGTTGTAAAGTCT-AAGTTCA-TGCCTCAAATGAGACAAACATGGATTCTACTAA
*
1340617 TGATCATCATTC-TTTTGTGATCAGGTACTATAAACACATTCTCCGCATTAGGATA-ATTGACAT
446 TGATCATCATTCTTTTTGTGATCAGGCACTATAAACACATTCTCCGCATTAGGATATA-TGACAT
* * ** **** ** *
1340680 TGATGCTTTTCTTTTGC-ATGGAAATTTTTTCTTTGC-CCAATT-ATCCTTAAAAT-TAAAGTTC
510 TAATGCTTTGCTTTCACAAT--AAAGGCCTTCTTCCCACCAATTGAT--GTAAAATCT-AAGTTC
** * * *
1340741 ATCCCTTGAATAAGACAAGCATCGATTCTCCAAACATTCTCCATT-TTTTCCAAGAT-TGGGAAG
570 ATCCCTCAAATAAGACAAACATCGATTCTACAAACAATCTCCATTCTTTT-CAAGATAT-GGAA-
1340804 CC
632 CC
*
1340806 A-AAACACATTGC-CTTCGTTAGGATA
1 ATAAACACATT-CTCTACGTTAGGATA
1340831 CACGACATTG
Statistics
Matches: 552, Mismatches: 90, Indels: 37
0.81 0.13 0.05
Matches are distributed among these distances:
632 2 0.00
633 166 0.30
634 84 0.15
635 86 0.16
636 209 0.38
637 5 0.01
ACGTcount: A:0.30, C:0.20, G:0.15, T:0.35
Consensus pattern (633 bp):
ATAAACACATTCTCTACGTTAGGATAATTAACATTGACGCTTTTCTTTTGCATGAAAACCTTTTC
TTTGCCCAATTATCCTCAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCATAAC
AGTCTCCATCATTTCCAAGATTGGGAAGCCAAAACACATTGCCTTCGTTAGAATACACGACATTG
ATGCTATGGTGTCGCAAGAAAAGCGTTTCTTCCCACCATTTTTGATTGAATCAAAGGTTGTCTCT
TAAATAAGAAAGACATCAATACTCACAAAAATCCCCATTCCTTTCAGATTAGGCACCATAAACAT
AGTCTTCTCATTAGGATACATGATATTGAAGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCA
ATTGTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTACTAATGATCATCAT
TCTTTTTGTGATCAGGCACTATAAACACATTCTCCGCATTAGGATATATGACATTAATGCTTTGC
TTTCACAATAAAGGCCTTCTTCCCACCAATTGATGTAAAATCTAAGTTCATCCCTCAAATAAGAC
AAACATCGATTCTACAAACAATCTCCATTCTTTTCAAGATATGGAACC
Found at i:1341227 original size:476 final size:472
Alignment explanation
Indices: 1340025--1341622 Score: 2023
Period size: 476 Copynumber: 3.4 Consensus size: 472
1340015 ACACATTTTC
* * * * * *
1340025 CTCATTAGGATATATGATATT-AATGCTTTGGTTTCACAATAAAGGCCTTCTTCCCACCGATTGA
1 CTCATTAGGATACATGATATTGAA-GCTTTGGTTTTACAACAAAGGCTTTCTTCCCACCAATTGT
* *
1340089 TGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAATATGGATTCTAGTAACAATCTTCATTCTTT
65 TGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGT-ATAATCTTCATTCTTT
* * * * *
1340154 TTGTGATATGGCACTATGAACACATTCTCTACGTTAGGATAATTAACATTGACGTTTTTCTTTTG
129 TTGTGATATGGCACTATAAACACATTCTCTGCATTAGGATAATTGACATTGAAGTTTTTCTTTTG
* *
1340219 CATGAAAACCTTTTCTTTGCCCAATTATCCTCGAAATGAAAGTTCATCCCTTGAATAAGACAAGC
194 CATGAAAACCTTTTCTTTGCCCAATTATCCT-AAAATCAAAGTTCATCCCTTGAATAAGACAAGC
* * ** * * *
1340284 CTC-ACTTCT-GATAATAGTCTCCACTCATTTCAAGATTGGGAAGCCAAAACACTTTGCTTTTGT
258 ATCGA-TTCTCCA-AATAGTCTCCA-TTTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTCGT
* * * * * * * *
1340347 TCGAATACCCGACATTGATGCTTCAGGTGTCGCAAGAAATGCTTTTTTTCCCTCCATTTTTGATT
320 TAGGATACACGACATTGATGCTT--GGTGTCGCAAGAAAAGCTTTTCTTCCCACCGTTTTTGATA
* ** *
1340412 GAATCAAAGTTTGTCTCTTAAATAAGACAAACATCAATACTCACAAAAAATCCCTATTCTTTTCT
383 GAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCACACTAATTCCC-ATTCTTTTC-
*
1340477 A-GATTAGGCACCATAAACATAGTCTT
446 AGGGTTAGGCACCATAAACATAGTCTT
*
1340503 CTCATTAGGATACATGATATTGAAGCTTTGGTTTTGCAACAAAGG-TTCTCTTCCCACCAATTGT
1 CTCATTAGGATACATGATATTGAAGCTTTGGTTTTACAACAAAGGCTT-TCTTCCCACCAATTGT
* * * * *
1340567 TGTAAAGTCTCAA-TTAGTGCCTCAAATGAGACATATATGGATTCTGGTATTGATCATCATTC-T
65 TGTAAAGTCT-AAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGTA-TAATCTTCATTCTT
* * * *
1340630 TTTGTGATCA-GGTACTATAAACACATTCTCCGCATTAGGATAATTGACATTGATGCTTTTCTTT
128 TTTGTGAT-ATGGCACTATAAACACATTCTCTGCATTAGGATAATTGACATTGAAGTTTTTCTTT
* ** *
1340694 TGCATGGAAATTTTTTCTTTGCCCAATTATCCTTAAAATTAAAGTTCATCCCTTGAATAAGACAA
192 TGCATGAAAACCTTTTCTTTGCCCAATTATCC-TAAAATCAAAGTTCATCCCTTGAATAAGACAA
* *
1340759 GCATCGATTCTCCAAACATTCTCCATTTTTTCCAAGATTGGGAAGCCAAAACACATTGCCTTCGT
256 GCATCGATTCTCCAAATAGTCTCCATTTTTT-CAAGATTGGGAAGCCAAAACACATTGCCTTCGT
* *
1340824 TAGGATACACGACATTGATGCTATGGTGTAGCAAGAAAAGCCTTTCTTCCCACCGTTTTTGATAG
320 TAGGATACACGACATTGATGCT-TGGTGTCGCAAGAAAAGCTTTTCTTCCCACCGTTTTTGATAG
* *
1340889 AATCAAAGGTTGTCTCTTAAATAAGA-AAGACATGAATACTCACACTAATTCCCATTCCTTTCAG
384 AATCAAAGTTTGTCTCTTAAATAAGACAA-ACATGAATACTCACACTAATTCCCATTCTTTTCAG
*
1340953 GGTTAGGCACCGTAAACATAGTCTT
448 GGTTAGGCACCATAAACATAGTCTT
* *
1340978 CTCGTTAGGATACATGATATTGAAGCTTTGGTTTTACAACAAAGGATTTCTTCCCACCAATTGTT
1 CTCATTAGGATACATGATATTGAAGCTTTGGTTTTACAACAAAGGCTTTCTTCCCACCAATTGTT
* *
1341043 GTAAAGTCTATGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGTCATAATCTTCATTCTTTC
66 GTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGT-ATAATCTTCATTCTTTT
* * *
1341108 TGTGATATGGCACTACAAACACATTTTCTGCATTAGGATAATTGACATTGAAGTTTTTCTTTTAC
130 TGTGATATGGCACTATAAACACATTCTCTGCATTAGGATAATTGACATTGAAGTTTTTCTTTTGC
* * *
1341173 ATGAAAACCTTTTCTTTGCCCCATTATCCGTAAAATCAAAGTTCTTCCCTTGAATAAGACAAGCT
195 ATGAAAACCTTTTCTTTGCCCAATTATCC-TAAAATCAAAGTTCATCCCTTGAATAAGACAAGCA
* *
1341238 TCGATTCTCCTAATAGTCTCCAATTTTTTCAAGATTGGAAAGCCAAAACACATTGCCTTCGTTAG
259 TCGATTCTCCAAATAGTCTCC-ATTTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTCGTTAG
* * * * ** *
1341303 GATGCACGACATTGATGCTTTGGGGTCCCAAGAAAAGCTTTTCTTCTCGTCGTTTTTGACAGAAT
323 GATACACGACATTGATGC-TTGGTGTCGCAAGAAAAGCTTTTCTTCCCACCGTTTTTGATAGAAT
* * * *
1341368 CCAAGTTTGTCTCTTAAAAAAGACTAACATGAATACTCACACTAATCCCCATTCTTTTCAGGGTT
387 CAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCACACTAATTCCCATTCTTTTCAGGGTT
* *
1341433 AGGTACCATAAATATAGTCTT
452 AGGCACCATAAACATAGTCTT
* * * * * *
1341454 CTTATTAGGACACATGATACTGAAGCTTTGGTTTTGCAACAAAGGCTTTCTTCCCACCAGTTTTT
1 CTCATTAGGATACATGATATTGAAGCTTTGGTTTTACAACAAAGGCTTTCTTCCCACCAATTGTT
* * * * * *
1341519 GTAAACTCTAAGTTCATGCCTCAAATGTA-ACAAACATGGATTCTACTGATGAT-TTCTTTCTTT
66 GTAAAGTCTAAGTTCGTGCCTCAAATG-AGACAAATATGGATTCTAGT-ATAATCTTCATTCTTT
* * *
1341582 TTGTGATTTGGCACAATAAACACATTTTCCT-CATTAGGATA
129 TTGTGATATGGCACTATAAACACATTCT-CTGCATTAGGATA
1341623 CATGAGATAA
Statistics
Matches: 979, Mismatches: 119, Indels: 47
0.86 0.10 0.04
Matches are distributed among these distances:
474 2 0.00
475 188 0.19
476 486 0.50
477 191 0.20
478 108 0.11
479 4 0.00
ACGTcount: A:0.30, C:0.20, G:0.15, T:0.35
Consensus pattern (472 bp):
CTCATTAGGATACATGATATTGAAGCTTTGGTTTTACAACAAAGGCTTTCTTCCCACCAATTGTT
GTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGTATAATCTTCATTCTTTTT
GTGATATGGCACTATAAACACATTCTCTGCATTAGGATAATTGACATTGAAGTTTTTCTTTTGCA
TGAAAACCTTTTCTTTGCCCAATTATCCTAAAATCAAAGTTCATCCCTTGAATAAGACAAGCATC
GATTCTCCAAATAGTCTCCATTTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTCGTTAGGAT
ACACGACATTGATGCTTGGTGTCGCAAGAAAAGCTTTTCTTCCCACCGTTTTTGATAGAATCAAA
GTTTGTCTCTTAAATAAGACAAACATGAATACTCACACTAATTCCCATTCTTTTCAGGGTTAGGC
ACCATAAACATAGTCTT
Found at i:1341883 original size:650 final size:652
Alignment explanation
Indices: 1340985--1342273 Score: 1723
Period size: 650 Copynumber: 2.0 Consensus size: 652
1340975 CTTCTCGTTA
1340985 GGATACATGATATTGAAGCTTTGGTTTTACAACAAAGGATTTCTTCCCACCAATTGTTGTAAAGT
1 GGATACATGATATTGAAGCTTTGGTTTTACAACAAAGGATTTCTTCCCACCAATTGTTGTAAAGT
* * * *
1341050 CTATGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGTCATAATCTTCATTCTTTCTGTGATA
66 CTAAGTTCATACCTCAAAT-AGACAAATATGGATTCTAGTAATAATCTTCATTCTTTCTGTGATA
* * * * * **
1341115 TGGCACTACAAACACATTTTCTGCATTAGGATAATTGACATTGAAGTTTTTCTTTTACATGAAAA
130 TGGCACTACAAACACAATCTCCGCATCAAGATAATTGACACAGAAGTTTTTCTTTTACATGAAAA
* * * *
1341180 CCTTTTCTTTGCCCCATTATCCGTAAAATCAAAGTTCTTCCCTTGAATAAGACAAGCTTCGA-TT
195 CCATTTCTTTGCCCAATTATCCGTAAAATCAAAGTTCATCCCTTGAATAAGACAAGCCTC-ACTT
* ** * *
1341244 CTCCTAATAGTCTCCAATTTTTTCAAGATTGGAAAGCCAAAACAC-ATTGCCTTCGTTAGGATGC
259 CTCATAATAGTCTCCAATCCTTTCAAGATTGGAAAGCCAAAACACTA-TGCCTTCGTTAGAATAC
* * * * *
1341308 ACGACATTGATGCTTTGGGGTCCCAAGAAAAGCTTTTCTTCTCGTCGTTTTTGACAGAATCCAAG
323 ACGACATTGATGCTTCGGGGTCCCAAGAAAAGCTTTTCTTCCCGCCATTTTTGACAGAATCAAAG
* ** * * *
1341373 TTTGTCTCTTAAAAAAGACTAACATGAATACTCACACTAATCCCCATTCTTTTCAGGGTTAGGTA
388 TTTGTCTCTTAAAAAAGACAAACATGAATACTCACAAAAATCCCCATTCTTTTCAAGATTAGGCA
* * * *
1341438 CCATAAATATAGTCTTCTTATTAGGACACATGATACTGAAGCTTTGGTTTTGCAACAAAGGCTTT
453 CCATAAACATAGTCTTCTTATTAGGACACAAGATACTGAAGCTTTGGTTTCGCAACAAAAGCTTT
* *
1341503 CTTCCCACCAGTTTTTGTAAACTCTA-AGTTCATGCCTCAAATGTA-ACAAACATGGATTCTACT
518 CTTCCCACCAATTATTGTAAACTC-ACAGTTCATGCCTCAAATG-AGACAAACATGGATTCTACT
* * * ** * *
1341566 GA-TGAT-TTCTTTCTTTTTGTGATTTGGCACAATAAACACATTTTCCTCATTAGGATACATGAG
581 -ATTGATCATCATTCTATTTGTGATAAGGCACAATAAACACATTCTCCGCATTAGGATACATGAG
1341629 ATAAACAT
645 ATAAACAT
* * * *
1341637 GGATATATGATATT-AATGCTTTGGTTTTGCAACAAAGGCTTTCTTCCCACTAATTGTTGTAAAG
1 GGATACATGATATTGAA-GCTTTGGTTTTACAACAAAGGATTTCTTCCCACCAATTGTTGTAAAG
* * *
1341701 TCTAAGTTCATACCTCAAAT-GACACATATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATA
65 TCTAAGTTCATACCTCAAATAGACAAATATGGATTCTAGTAATAATCTTCATTCTTTCTGTGATA
* * *
1341765 TGGCACTACTAACACAATCTCCGCATCAAGATAATTGACACAGATGTTTTTCTTTTGCATGAAAA
130 TGGCACTACAAACACAATCTCCGCATCAAGATAATTGACACAGAAGTTTTTCTTTTACATGAAAA
* *
1341830 CCATTTCTTTGCCCAATTATCC-TCGAAATGAAAGTTCATCCCTTGAATAAGACAAGCCTCACTT
195 CCATTTCTTTGCCCAATTATCCGT-AAAATCAAAGTTCATCCCTTGAATAAGACAAGCCTCACTT
* * * * * * *
1341894 CTGATAATAGTCTCCACTCCTTTCAAGATTGGGAAGCCAAAACACTATGCTTTTGTTCGAATACC
259 CTCATAATAGTCTCCAATCCTTTCAAGATTGGAAAGCCAAAACACTATGCCTTCGTTAGAATACA
* * * * **
1341959 CGACATTGATGCTTCGGTGTCGCAAGAAATGCTTTTTTTCCCGCCATTTTTGATTGAATCAAAGT
324 CGACATTGATGCTTCGGGGTCCCAAGAAAAGCTTTTCTTCCCGCCATTTTTGACAGAATCAAAGT
*
1342024 TTGTCTCTTAAATAAGACAAACATGAATACTCACAAAAATCCCCATTCTTTTCAAGATTAGGCAC
389 TTGTCTCTTAAAAAAGACAAACATGAATACTCACAAAAATCCCCATTCTTTTCAAGATTAGGCAC
* * * *
1342089 CATAAACATCGTCTTCTTATTAGGATACAAGATATTGAAGCTTTGGTTTCGCAACAAAAGTTTTC
454 CATAAACATAGTCTTCTTATTAGGACACAAGATACTGAAGCTTTGGTTTCGCAACAAAAGCTTTC
* * * * *
1342154 TTCCCACCAATTATTGTAAAGTCACAGTTCGTGCCTCAAATGAGACATATATGGATTCTAGTATT
519 TTCCCACCAATTATTGTAAACTCACAGTTCATGCCTCAAATGAGACAAACATGGATTCTACTATT
*
1342219 GATCATCATTCTATTTGTGATAAGGCACTATAAACACATTCTCCGCATTAGGATA
584 GATCATCATTCTATTTGTGATAAGGCACAATAAACACATTCTCCGCATTAGGATA
1342274 ATTGACATTG
Statistics
Matches: 549, Mismatches: 80, Indels: 17
0.85 0.12 0.03
Matches are distributed among these distances:
649 5 0.01
650 424 0.77
651 46 0.08
652 74 0.13
ACGTcount: A:0.30, C:0.20, G:0.15, T:0.35
Consensus pattern (652 bp):
GGATACATGATATTGAAGCTTTGGTTTTACAACAAAGGATTTCTTCCCACCAATTGTTGTAAAGT
CTAAGTTCATACCTCAAATAGACAAATATGGATTCTAGTAATAATCTTCATTCTTTCTGTGATAT
GGCACTACAAACACAATCTCCGCATCAAGATAATTGACACAGAAGTTTTTCTTTTACATGAAAAC
CATTTCTTTGCCCAATTATCCGTAAAATCAAAGTTCATCCCTTGAATAAGACAAGCCTCACTTCT
CATAATAGTCTCCAATCCTTTCAAGATTGGAAAGCCAAAACACTATGCCTTCGTTAGAATACACG
ACATTGATGCTTCGGGGTCCCAAGAAAAGCTTTTCTTCCCGCCATTTTTGACAGAATCAAAGTTT
GTCTCTTAAAAAAGACAAACATGAATACTCACAAAAATCCCCATTCTTTTCAAGATTAGGCACCA
TAAACATAGTCTTCTTATTAGGACACAAGATACTGAAGCTTTGGTTTCGCAACAAAAGCTTTCTT
CCCACCAATTATTGTAAACTCACAGTTCATGCCTCAAATGAGACAAACATGGATTCTACTATTGA
TCATCATTCTATTTGTGATAAGGCACAATAAACACATTCTCCGCATTAGGATACATGAGATAAAC
AT
Found at i:1342284 original size:158 final size:156
Alignment explanation
Indices: 1342079--1346234 Score: 1436
Period size: 158 Copynumber: 26.2 Consensus size: 156
1342069 TTCTTTTCAA
* * * * *
1342079 GATTAGGCACCATAAACATC-GTCTTCTTATTAGGATACAAGATATTGAAGCTTTGGTTTCGCAA
1 GATTTGGCACCATAAACA-CATTCTCCTCATTAGGATA-ATGATATTGAAGCTTTGGTTTCGCAA
* * * * *
1342143 CAAAAGTTTTCTTCCCACCAATTATTGTAAAGTCACAGTTCGTGCCTCAAATGAGACATATATGG
64 CAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCA-AGTTCGTGCCTCAAATGAGACAAACATGG
* * * *
1342208 ATTCTAGTATTGATCATCATTCTATTTGT
128 ATTCTACTAATGATCTTCATTCTTTTTGT
** * * * * *
1342237 GATAAGGCACTATAAACACATTCTCCGCATTAGGATAATTGACATTGATGCTTTGCTTTTC-CAT
1 GATTTGGCACCATAAACACATTCTCCTCATTAGGATAA-TGATATTGAAGCTTTG-GTTTCGCA-
** * ** * * ** * ** * **
1342301 GGAAA-TCTTTTCTTTGC-CCAATTATCCT-TAAAATCAAAGTTTATTCCTTGAATAAGACAAGG
63 ACAAAGGC-TTTCTTCCCACCAATT-T-TTGTAAAGTC-AAGTTCGTGCCTCAAATGAGACAAAC
* * * * ***
1342363 ATCGATTCTCCTAA-CAGTCTCCATT-TTTTCCAA
124 ATGGATTCTACTAATGA-TCTTCATTCTTTT-TGT
* * * * ** * * *
1342396 GATTGGGAAGCCA-AAACACATTGC-CTTCGTTAGGATACACAACATTGATGCTTTGGTGTCGCA
1 GATTTGGCA-CCATAAACACATT-CTCCTCATTAGGATA-ATGATATTGAAGCTTTGGTTTCGCA
* * * ** * * *
1342459 AGAAAAGCTTTTCTTCCCGCCGTTTTTTATAGAA-TCAAAGGTT-GT-CTCTTAAATAAGA-AAG
63 ACAAAGGC-TTTCTTCCCACCAATTTTTGTA-AAGTC-AA-GTTCGTGC-CTCAAATGAGACAA-
* * * * ** *
1342520 ACATGAATACTCAC-ACTAATCCCCATTCTTTTCAG-
122 ACATGGATTCT-ACTAATGATCTTCATTCTTTT-TGT
* * * * * * *
1342555 GGTTAGGTACCATAAACATAGTCTTCTCGTTAGGATACATGATATTGAAGCTTTGGTTTCGCAAC
1 GATTTGGCACCATAAACACATTCTCCTCATTAGGATA-ATGATATTGAAGCTTTGGTTTCGCAAC
* * * *
1342620 AAAGGCTTTCTTCTCACCAATTTTTGTAAACTCTAAGTTCATGCCTCAAATGTGACAAACATGGA
65 AAAGGCTTTCTTCCCACCAATTTTTGTAAAGTC-AAGTTCGTGCCTCAAATGAGACAAACATGGA
*
1342685 TTCTACTAATGATTTTCATTCTTTTTGT
129 TTCTACTAATGATCTTCATTCTTTTTGT
* *
1342713 GATTTGGCACTATAAACACATTTTCCTCATTAGGATATATGATATT-AATGCTTTGGTTTCGCAA
1 GATTTGGCACCATAAACACATTCTCCTCATTAGGATA-ATGATATTGAA-GCTTTGGTTTCGCAA
* * * * *
1342777 TAAAGGCTTTCTTCCCACCAATTGTTGTAAAGTCTAAGTTCGTGCCACAAATGAGATAAATATGG
64 CAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTC-AAGTTCGTGCCTCAAATGAGACAAACATGG
*
1342842 ATTCTAGTAATGATCTTCATTCTTTTTGT
128 ATTCTACTAATGATCTTCATTCTTTTTGT
* * * * * * ** * **
1342871 GATATGGCACTATAAACACATTCTCCGCATTAGGATAACTGACATTGATGTTTTTCTTTTGCATG
1 GATTTGGCACCATAAACACATTCTCCTCATTAGGATAA-TGATATTGAAGCTTTGGTTTCGCAAC
** ** * * * * *** * * *
1342936 AAAACCTTTTCTTTGC-CCAATTATCCT-TAAAATCAAAGTTCTTCCCTTTTATAAGACTAGCAT
65 AAAGGC-TTTCTTCCCACCAATT-T-TTGTAAAGTC-AAGTTCGTGCCTCAAATGAGACAAACAT
* * * * *
1342999 TGATTCTCCTAA-CAGTCTCCA-T-TTTTTGCAA
126 GGATTCTACTAATGA-TCTTCATTCTTTTTG--T
* * * * * * * * ** *
1343030 GATTGGGAAACCA-AAACACATTGC-CTTCGTTAGGATGCACGACATTGATGCTTTGGGGTCACA
1 GATTTGG-CACCATAAACACATT-CTCCTCATTAGGAT-AATGATATTGAAGCTTTGGTTTCGCA
* * * * ** * * * * *
1343093 AGAAAAGCTTTTCTTCTC-GCTGTTTTTGATAGAA-TCCAAGTT-TTTCTCTTAAATAAGACTAA
63 ACAAAGGC-TTTCTTCCCACCAATTTTTG-TA-AAGT-CAAGTTCGTGC-CTCAAATGAGACAAA
* * * * ** *
1343155 CATGAATACTCAC-ACTAATCCCCATTCTTTTCAG-
123 CATGGATTCT-ACTAATGATCTTCATTCTTTT-TGT
* * * * * * * * * * *
1343189 GGTTAGGTACCATAAATATAGTATTCTTATTAGGATACATGATACTGAAGCATTGGTCTT-GCAA
1 GATTTGGCACCATAAACACATTCTCCTCATTAGGATA-ATGATATTGAAGCTTTGGT-TTCGCAA
* * * *
1343253 CAAAGGCTTTCTTCCCACCAGTTTTTGTAAAGTCTAAGTTCATGCCTCAAATGCGACAAACATGT
64 CAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTC-AAGTTCGTGCCTCAAATGAGACAAACATGG
* *
1343318 ATTCTACTAATGATTTTCATTCTTTTTTT
128 ATTCTACTAATGATCTTCATTCTTTTTGT
* * *
1343347 GATTTGGCACAATAAACACATTTTCCTCATTAGGATGCATGATATT-AATGCTTTGGTTTCGCAA
1 GATTTGGCACCATAAACACATTCTCCTCATTAGGAT-AATGATATTGAA-GCTTTGGTTTCGCAA
* * * **
1343411 CAAAGGCTTTCTTCCAACCAATTGTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAATTATGG
64 CAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTC-AAGTTCGTGCCTCAAATGAGACAAACATGG
* * *
1343476 ATTCTACTAACGATTTTCATTCTTTATGT
128 ATTCTACTAATGATCTTCATTCTTTTTGT
* * * * * **
1343505 GATTTGGCACAATAAAAACATTTTCCTCTTTAGGATACATGTTATT-AATGCTTTGGTTTCATAA
1 GATTTGGCACCATAAACACATTCTCCTCATTAGGATA-ATGATATTGAA-GCTTTGGTTTCGCAA
* * * * * * *
1343569 CAAAGGCTTTCTTCCCACCGATTGTTGTAAAGTCTTAGTTTGTTCCTCAAATGAGACAAATATAG
64 CAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTC-AAGTTCGTGCCTCAAATGAGACAAACATGG
*
1343634 ATTCTAGTAATGATCTTCATTCTTTTTGT
128 ATTCTACTAATGATCTTCATTCTTTTTGT
* ** * * * * * ** * *
1343663 GATATGGCACTGTGAACACATTCTCCGCTTTAGGATAATTGACATTGATA-TTTTTCTTTTGCAT
1 GATTTGGCACCATAAACACATTCTCCTCATTAGGATAA-TGATATTGA-AGCTTTGGTTTCGCAA
* ** ** * * * * ** * **
1343727 GAAAACCTTTTCTTTGC-CCAATTATCCT-TAAAATCAAAGTTCTTCCCTTGAATAAGACAAGTA
64 CAAAGGC-TTTCTTCCCACCAATT-T-TTGTAAAGTC-AAGTTCGTGCCTCAAATGAGACAAACA
* * * * ***
1343790 TCGATTCTCCTAA-CAGTCTCCATT-TTTGTCAA
125 TGGATTCTACTAATGA-TCTTCATTCTTT-TTGT
* * * * * * * * * *
1343822 GATTGGGAAGCCA-AAACACATTGC-CTTCGTTAGGATGCACGACATTGATGCTTTGCG-GTCAC
1 GATTTGGCA-CCATAAACACATT-CTCCTCATTAGGAT-AATGATATTGAAGCTTTG-GTTTCGC
* * * * * * * *
1343884 AAGAAAAGCTTTTCTTCCCACC-ATTTTTGATAGAA-TCCGAGTT-TTTCTCTTAAATAAGACTA
62 AACAAAGGC-TTTCTTCCCACCAATTTTTG-TA-AAGT-CAAGTTCGTGC-CTCAAATGAGACAA
* * * * ** * **
1343946 ACATGAATACTCAC-ACTAATCCCCGTTCTTTTCAT
122 ACATGGATTCT-ACTAATGATCTTCATTCTTTTTGT
* * * * * * * * * *
1343981 GGTTAGGTACCATAAATATAGTCTTCTCATTAGGACACATGATACTGAAGCTTTGGTTTTGCAAC
1 GATTTGGCACCATAAACACATTCTCCTCATTAGGATA-ATGATATTGAAGCTTTGGTTTCGCAAC
* * ** *
1344046 AAAGGCTTTCTTCCCACCAGTTTTTGTAAACTCTAAGTTCACGCCTCAAATGCGACAAACATGGA
65 AAAGGCTTTCTTCCCACCAATTTTTGTAAAGTC-AAGTTCGTGCCTCAAATGAGACAAACATGGA
* * *
1344111 TTCTACTGATGATTTTCATTCTTTTTAT
129 TTCTACTAATGATCTTCATTCTTTTTGT
* * * * *
1344139 GATTTGGCACAATAAACACATTTTCCTCATTAGGATGCATGATATT-AATGCTTTGCTTTTGCAA
1 GATTTGGCACCATAAACACATTCTCCTCATTAGGAT-AATGATATTGAA-GCTTTGGTTTCGCAA
* * * *
1344203 CAAAGGCTTTCTTCCAACCAATTGTTGTAAAGTCTAAGTTCGTGCCTCAAACGAGACAAATATGG
64 CAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTC-AAGTTCGTGCCTCAAATGAGACAAACATGG
*
1344268 ATTCTACTAATGATTTTCATTCTTTTTGT
128 ATTCTACTAATGATCTTCATTCTTTTTGT
* * **
1344297 GATTTGGC-CC-TATAACAACATTTTCCTCTTTAGGATACATGATATT-AATGCTTTGGTTTCAT
1 GATTTGGCACCATA-AAC-ACATTCTCCTCATTAGGATA-ATGATATTGAA-GCTTTGGTTTCGC
* *
1344359 AACAAAGGCTTTCTTCCCACCAATTATTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATAT
62 AACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTC-AAGTTCGTGCCTCAAATGAGACAAACAT
*
1344424 GGATTCTAGTAATGATCTTCATTCTTTTTGT
126 GGATTCTACTAATGATCTTCATTCTTTTTGT
* * * * * ** ** **
1344455 GATATGGCACTATGAACACATTCTCCGCATTAGGATAATTGACATTGATATTTTTCTTTTGCGTG
1 GATTTGGCACCATAAACACATTCTCCTCATTAGGATAA-TGATATTGA-AGCTTTGGTTT-CGCA
* ** * * * * ** * **
1344520 A-AAA-CCTTTTCTTTGC-CCAATTATCCT-TAAAATCAAAGTTCTTCCCTTGAATAAGACAAGT
63 ACAAAGGC-TTTCTTCCCACCAATT-T-TTGTAAAGTC-AAGTTCGTGCCTCAAATGAGACAAAC
* * * **
1344581 ATCGATTCTCCTAA-GAGTCTCCATT-TTTTTCAA
124 ATGGATTCTACTAATGA-TCTTCATTCTTTTT-GT
* * * * * * * * ** **
1344614 GATTAGGAAGCCA-AAACACATTGC-CTTCGTTAGGATGCACGACATTGATGCTTTGGGGTCATA
1 GATTTGGCA-CCATAAACACATT-CTCCTCATTAGGAT-AATGATATTGAAGCTTTGGTTTCGCA
* * ** * * * * * * * *
1344677 AGAAAAGCTTTTCTTCCCGTC-GTTTTTGATAGATTCCAAGTT-TTTCTCTTAAATAAGACTAAC
63 ACAAAGGC-TTTCTTCCCACCAATTTTTG-TAAAGT-CAAGTTCGTGC-CTCAAATGAGACAAAC
* * * * ** *
1344740 ATGAATACTTAC-ACTAATCCCCATTCTTTTCAG-
124 ATGGATTC-TACTAATGATCTTCATTCTTTT-TGT
* * * * * * * * *
1344773 GGTTAGGTACCATAAATATAGTCTTCTCATTAGGATACATGATACTGAAGCTTTGGTTTTGCAAC
1 GATTTGGCACCATAAACACATTCTCCTCATTAGGATA-ATGATATTGAAGCTTTGGTTTCGCAAC
* * * * * * * *
1344838 AAAGGTTTTCTTCCCACCAGTTATTGTGAAGTTTAATTTCATGCCTCAAATGCGACAAACATGGA
65 AAAGGCTTTCTTCCCACCAATTTTTGTAAAG-TCAAGTTCGTGCCTCAAATGAGACAAACATGGA
* * * *
1344903 TTCTACTGATGATTTTTATTGTTTTTGT
129 TTCTACTAATGATCTTCATTCTTTTTGT
* * * * **
1344931 GATTTGGCACTATAAAAACATTTTCCTCTTTAGGATACATGATATT-AATGCTTTGGTTTCATAA
1 GATTTGGCACCATAAACACATTCTCCTCATTAGGATA-ATGATATTGAA-GCTTTGGTTTCGCAA
* * * *
1344995 CAAAGGCTTTCTTCCCACCAATTGTTGTAAAGTCTACGTTCGTGCCTCAAATAAGACAAATATGG
64 CAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTC-AAGTTCGTGCCTCAAATGAGACAAACATGG
*
1345060 ATTCTAGTAATGATCTTCA-T-TTTTTGT
128 ATTCTACTAATGATCTTCATTCTTTTTGT
* ** * * ** * * ** * **
1345087 GCTAAGGCACTATAAACACATTCTCCGCATTAGGATAATTGACGTTGATGTTTTTCTTTTGCATT
1 GATTTGGCACCATAAACACATTCTCCTCATTAGGATAA-TGATATTGAAGCTTTGGTTTCGCAAC
* ** * * * * * * * * * *
1345152 AAAGTCTTTTCTTTGC-CCAATTATCCT-TAAAATGAAGGTCCAT-CCCCTGAATAAGGCAAGCA
65 AAAGGC-TTTCTTCCCACCAATT-T-TTGTAAAGTCAA-GTTCGTGCCTC-AAATGAGACAAACA
* * * * ***
1345214 TCGATTCT-CATAAT-AGTCTCCACTCCTTTCAA
125 TGGATTCTAC-TAATGA-TCTTCATTCTTTTTGT
* * * * * * * * *
1345246 GATTGGGAAGCCA-AAACACATTGC-CTTCATTAGGATACACGACATTGATGCTTTGATGTCTCA
1 GATTTGGCA-CCATAAACACATT-CTCCTCATTAGGATA-ATGATATTGAAGCTTTGGTTTCGCA
* * * * * * *
1345309 AGAAAAGCTTTTCTTCTCGCC-ATTTTTGATAGAA-TCAAAGTTTGT-CTCTTAAATAAGA-AAG
63 ACAAAGGC-TTTCTTCCCACCAATTTTTG-TA-AAGTC-AAGTTCGTGC-CTCAAATGAGACAA-
* * * ** * **
1345370 AC-TCGAATACCCAC-CCTAATCCCCATTCTTTTTAG-
122 ACAT-GGAT-TCTACTAATGATCTTCATTCTTTTT-GT
* * * * * *
1345405 GATTAGGCTCCATAAACATAGTCTTCTCATTAGGATACATGATATTGAAGCTTTGGTTTCACAAC
1 GATTTGGCACCATAAACACATTCTCCTCATTAGGATA-ATGATATTGAAGCTTTGGTTTCGCAAC
* * * *
1345470 AAAGGTTTTCTTCCCACCAATTGTTGTAAAGTCTAAGTTCGTGCCTTAAATGAGACAAATATGGA
65 AAAGGCTTTCTTCCCACCAATTTTTGTAAAGTC-AAGTTCGTGCCTCAAATGAGACAAACATGGA
* ** *
1345535 TTCTAGTGTTGATCATCATTCTTTTTGT
129 TTCTACTAATGATCTTCATTCTTTTTGT
** * ** * * * * ** * *
1345563 GATAAGGAAGTATAAACACATTCTCCGCATTAGGATAATTGACATTGATGTTTTTCTTTGGCATG
1 GATTTGGCACCATAAACACATTCTCCTCATTAGGATAA-TGATATTGAAGCTTTGGTTTCGCA-A
* * ** ** * * * * ** *
1345628 GAAA-TCTTTTCTTTGC-CCAATTATTCCTAAAATGAAAGTTCATCCCTTGAATAAGA-AAAGCA
64 CAAAGGC-TTTCTTCCCACCAATT-TTTGTAAAGT-CAAGTTCGTGCCTCAAATGAGACAAA-CA
* * ** * ***
1345690 TCGATTCTCCTAACAATCTCCATT-TTTTCCAA
125 TGGATTCTACTAATGATCTTCATTCTTTT-TGT
* * ** * * * * * **
1345722 GATTGGGAAGCCA-AAATGCATTGC-CTTCATTAGGAAACACGACATTGATGCTTTGGTGCCGCA
1 GATTTGGCA-CCATAAACACATT-CTCCTCATTAGGATA-ATGATATTGAAGCTTTGGTTTCGCA
* * ** * * * * *
1345785 AGAAAAGCTTTTCTTCCTGCC-ATTTTTG-AGAGAATCAAAGTTTGT-CTCTTAAATAAGAGAAA
63 ACAAAGGC-TTTCTTCCCACCAATTTTTGTA-A-AGTC-AAGTTCGTGC-CTCAAATGAGACAAA
* * * * ** * **
1345847 CATGAATACTCAC-ACTAATCCCCAGTCTTTTTAC
123 CATGGATTCT-ACTAATGATCTTCATTCTTTTTGT
* * * * * * * * *
1345881 GGTTAGGCCCCAT-AACATAGTCTTCTCGTTAGGATACATGATATTGAATCTTTGGTTTTGCAAC
1 GATTTGGCACCATAAACACATTCTCCTCATTAGGATA-ATGATATTGAAGCTTTGGTTTCGCAAC
* * * *
1345945 AAAGGCTTTCCTCCCACCAATTTTTGAAAAGTCTAAGTTTTCATGCCTTAAATGCA-ACAAACAT
65 AAAGGCTTTCTTCCCACCAATTTTTGTAAAGTC-AAG--TTCGTGCCTCAAATG-AGACAAACAT
* * *
1346009 GGATTCT-CCAATGATTTTCATTCTTTTTCT
126 GGATTCTACTAATGATCTTCATTCTTTTTGT
* * *
1346039 GATTTGGCACTATAAACACATTTTCCTCATTAGGATACATGATATT-AATGCTTTGATTTCGCAA
1 GATTTGGCACCATAAACACATTCTCCTCATTAGGATA-ATGATATTGAA-GCTTTGGTTTCGCAA
* * * *
1346103 CAAAGGCTTTCTTCCCACCAATTGTTGTAAAGTCTAAGTTCGTGCCTCAATTGAGATAAATATGG
64 CAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTC-AAGTTCGTGCCTCAAATGAGACAAACATGG
* * **
1346168 ATTCTAGTAATGATCTCCAAGCTTTTTGT
128 ATTCTACTAATGATCTTCATTCTTTTTGT
** * * *
1346197 GATAAGGCACTATAAACACAATCTCCTCATTACGATAA
1 GATTTGGCACCATAAACACATTCTCCTCATTAGGATAA
1346235 AAGACATTGA
Statistics
Matches: 2946, Mismatches: 846, Indels: 413
0.70 0.20 0.10
Matches are distributed among these distances:
155 1 0.00
156 69 0.02
157 149 0.05
158 1485 0.50
159 1139 0.39
160 97 0.03
161 5 0.00
162 1 0.00
ACGTcount: A:0.29, C:0.20, G:0.15, T:0.36
Consensus pattern (156 bp):
GATTTGGCACCATAAACACATTCTCCTCATTAGGATAATGATATTGAAGCTTTGGTTTCGCAACA
AAGGCTTTCTTCCCACCAATTTTTGTAAAGTCAAGTTCGTGCCTCAAATGAGACAAACATGGATT
CTACTAATGATCTTCATTCTTTTTGT
Found at i:1342618 original size:476 final size:475
Alignment explanation
Indices: 1341637--1346093 Score: 2561
Period size: 476 Copynumber: 9.4 Consensus size: 475
1341627 AGATAAACAT
* * *
1341637 GGATATATGATATT-AATGCTTTGGTTTTGCAACAAAGGCTTTCTTCCCACTAATTGTTGTAAAG
1 GGATACATGATATTGAA-GCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTGTTGTAAAG
* *
1341701 TCTAAGTTCATACCTCAAAT--GACACATATGGATTCTAGTAATGATCTTCATTCTTTTTGTGAT
65 TCTAAGTTCATGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATTCTTTTTGTGAT
* * * * ** * *
1341764 ATGGCACTACT-AACACAATCTCCGCATCAAGATAATTGACACAGATGTTTTTCTTTTGCATGAA
130 AAGGCACTA-TAAACACATTCTCCGCATTAGGATAATTGACATTGATGCTTTGCTTTTGCATGAA
* * ** * *
1341828 AACCATTTCTTTGCCCAATTATCCTCGAAATGAAAGTTCATCCCTTGAATAAGACAAGCCTC-AC
194 AAGCTTTTCTTTGCCCAATTATCCTTAAAATCAAAGTTCATCCCTTGAATAAGACAAGCATCGA-
** * ** * ** * *
1341892 TTCTGATAATAGTCTCCACTCCTTTCAAGATTGGGAAGCCAAAACAC-TATGCTTTTGTTCGAAT
258 TTCTCCTAACAGTCTCCA-TTTTTTCAAGATTGGGAAGCCAAAACACAT-TGCCTTCATTAGGAT
* * * * * * *
1341956 ACCCGACATTGATGCTTCGGTGTCGCAAGAAATGCTTTTTTTCCCGCCATTTTTGATTGAATCAA
321 ACACGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTCCCACCATTTTTTATAGAATCAA
* ** *
1342021 AGTTTGTCTCTTAAATAAGACAAACATGAATACTCACAAAAATCCCCATTCTTTTCAAGATTAGG
386 AGGTTGTCTCTTAAATAAGACAAACATGAATACTCACACTAATCCCCATTCTTTTCAGGATTAGG
* *
1342086 CACCATAAACATCGTCTTCTTATTA
451 CACCATAAACATAGTCTTCTCATTA
* * * *
1342111 GGATACAAGATATTGAAGCTTTGGTTTCGCAACAAAAGTTTTCTTCCCACCAATTATTGTAAAGT
1 GGATACATGATATTGAAGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTGTTGTAAAGT
* * * * *
1342176 C-ACAGTTCGTGCCTCAAATGAGACATATATGGATTCTAGTATTGATCATCATTCTATTTGTGAT
66 CTA-AGTTCATGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATTCTTTTTGTGAT
* *
1342240 AAGGCACTATAAACACATTCTCCGCATTAGGATAATTGACATTGATGCTTTGCTTTTCCATGGAA
130 AAGGCACTATAAACACATTCTCCGCATTAGGATAATTGACATTGATGCTTTGCTTTTGCATGAAA
* * * *
1342305 ATCTTTTCTTTGCCCAATTATCCTTAAAATCAAAGTTTATTCCTTGAATAAGACAAGGATCGATT
195 AGCTTTTCTTTGCCCAATTATCCTTAAAATCAAAGTTCATCCCTTGAATAAGACAAGCATCGATT
*
1342370 CTCCTAACAGTCTCCATTTTTTCCAAGATTGGGAAGCCAAAACACATTGCCTTCGTTAGGATACA
260 CTCCTAACAGTCTCCATTTTTT-CAAGATTGGGAAGCCAAAACACATTGCCTTCATTAGGATACA
* * *
1342435 CAACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTCCCGCCGTTTTTTATAGAATCAAAGG
324 CGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTCCCACCATTTTTTATAGAATCAAAGG
* *
1342500 TTGTCTCTTAAATAAGA-AAGACATGAATACTCACACTAATCCCCATTCTTTTCAGGGTTAGGTA
389 TTGTCTCTTAAATAAGACAA-ACATGAATACTCACACTAATCCCCATTCTTTTCAGGATTAGGCA
*
1342564 CCATAAACATAGTCTTCTCGTTA
453 CCATAAACATAGTCTTCTCATTA
* * *
1342587 GGATACATGATATTGAAGCTTTGGTTTCGCAACAAAGGCTTTCTTCTCACCAATTTTTGTAAACT
1 GGATACATGATATTGAAGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTGTTGTAAAGT
* * * * *
1342652 CTAAGTTCATGCCTCAAATGTGACAAACATGGATTCTACTAATGATTTTCATTCTTTTTGTGATT
66 CTAAGTTCATGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATA
* * * * * * *
1342717 TGGCACTATAAACACATTTTCCTCATTAGGAT-ATATGATATTAATGCTTTGGTTTCGCAAT-AA
131 AGGCACTATAAACACATTCTCCGCATTAGGATAAT-TGACATTGATGCTTTGCTTTTGC-ATGAA
* ** * * * * * *** * * ** *
1342780 AGGC-TTTCTTCCCACCAATTGT--TGTAAAGTCTAAGTTCGTGCCACAAATGAGATAAATATGG
194 AAGCTTTTCTTTGC-CCAATTATCCT-TAAAATCAAAGTTCATCCCTTGAATAAGACAAGCATCG
** * * *** * * **
1342842 ATTCTAGTAA-TGATCTTCATTCTTTTTGTGATAT-GGCA-CTATAAACACATT-CTCCGCATTA
257 ATTCTCCTAACAG-TCTCCATT-TTTTCAAGAT-TGGGAAGCCA-AAACACATTGC-CTTCATTA
* ** * * * * *
1342903 GGATA-ACTGACATTGATGTTTTTCTTTTGCATGAAAACCTTTTCTTTGCCCA--ATTATCCTTA
317 GGATACAC-GACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTC-TT-CCCACCATT-T-TTTA
* * ** * * * * *
1342965 -A-AATCAAA-GTTCTTCCCTTTTATAAGACTAGCATTG-ATTCTC-CTAAC-AGTCTCCATT-T
377 TAGAATCAAAGGTT-GTCTCTTAAATAAGACAAACA-TGAATACTCAC--ACTAATCCCCATTCT
* * * * * * *
1343023 TTTGCAAGATTGGGAAACCA-AAACACATTGCCT-TCGTTA
438 TTT-CAGGATTAGG-CACCATAAACATAGT-CTTCTCATTA
* * * * ** * * * * * ** *
1343062 GGATGCACGACATTGATGCTTTGGGGTCACAAGAAAAGCTTTTCTTCTC-GCTGTTTTTGATAGA
1 GGATACATGATATTGAAGCTTTGGTTTCGCAACAAAGGC-TTTCTTCCCACCAATTGTTG-TA-A
* * * * * * * * * * * * ** *
1343126 A-TCCAAGTT-TTTCTCTTAAATAAGACTAACATGAATACTCA-CACTAATCCCCATTCTTTTCA
63 AGTCTAAGTTCATGC-CTCAAATGAGACAAATATGGATTCT-AGTAATGATCTTCATTCTTTT-T
* * * * * * * * * ** * * * * * *
1343188 G-GGTTAGGTACCATAAATATAGTATTCTTATTAGGATACA-TGATACTGAAGCATTGGTCTTGC
125 GTGATAAGGCACTATAAACACATTCTCCGCATTAGGATA-ATTGACATTGATGCTTTGCTTTTGC
** * ** * * * * * ** ** *
1343251 AACAAAGGC-TTTCTTCCCACCAGTT-T-TTGTAAAGTCTAAGTTCATGCCTCAAATGCGACAAA
189 ATGAAAAGCTTTTCTTTGC-CCAATTATCCT-TAAAATCAAAGTTCATCCCTTGAATAAGACAAG
* * * * *** * * * *
1343313 CAT-GTATTCTACTAA-TGATTTTCATTCTTTTTTTGATTTGGCA-CAATAAACACATTTTCC-T
252 CATCG-ATTCTCCTAACAG-TCTCCATT-TTTTCAAGATTGGGAAGCCA-AAACACA-TTGCCTT
* * * * * * * * * * *
1343374 CATTAGGATGCATGATATTAATGCTTTGGTTTCGCAACAAAGGC-TTTCTTCCAACCAATTGTTG
312 CATTAGGATACACGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTCCCACCATTTTTTA
* * * * ** * * * ***
1343438 TA-AAGTCTAA-GTTCATGC-CTCAAATGAGACAATTATGGATTCT-ACTAAC-GATTTTCATTC
377 TAGAA-TCAAAGGTT-GT-CTCTTAAATAAGACAAACATGAATACTCAC--ACTAATCCCCATTC
* * * * * *
1343498 -TTT-ATGTGATTTGGCACAATAAAAACA-TTTTCCTCTTTA
437 TTTTCA-G-GATTAGGCACCATAAACATAGTCTT-CTCATTA
* ** *
1343537 GGATACATGTTATT-AATGCTTTGGTTTCATAACAAAGGCTTTCTTCCCACCGATTGTTGTAAAG
1 GGATACATGATATTGAA-GCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTGTTGTAAAG
* ** * *
1343601 TCTTAGTTTGTTCCTCAAATGAGACAAATATAGATTCTAGTAATGATCTTCATTCTTTTTGTGAT
65 TCTAAGTTCATGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATTCTTTTTGTGAT
* * * * ** *
1343666 ATGGCACTGTGAACACATTCTCCGCTTTAGGATAATTGACATTGATATTTTTCTTTTGCATGAAA
130 AAGGCACTATAAACACATTCTCCGCATTAGGATAATTGACATTGATGCTTTGCTTTTGCATGAAA
* * *
1343731 ACCTTTTCTTTGCCCAATTATCCTTAAAATCAAAGTTCTTCCCTTGAATAAGACAAGTATCGATT
195 AGCTTTTCTTTGCCCAATTATCCTTAAAATCAAAGTTCATCCCTTGAATAAGACAAGCATCGATT
* *
1343796 CTCCTAACAGTCTCCATTTTTGTCAAGATTGGGAAGCCAAAACACATTGCCTTCGTTAGGATGCA
260 CTCCTAACAGTCTCCATTTTT-TCAAGATTGGGAAGCCAAAACACATTGCCTTCATTAGGATACA
* * **
1343861 CGACATTGATGCTTTGCG-GTCACAAGAAAAGCTTTTCTTCCCACCATTTTTGATAGAATCCGAG
324 CGACATTGATGCTTTG-GTGTCGCAAGAAAAGCTTTTCTTCCCACCATTTTTTATAGAATCAAAG
* * * * *
1343925 TTTTTCTCTTAAATAAGACTAACATGAATACTCACACTAATCCCCGTTCTTTTCATGG-TTAGGT
388 GTTGTCTCTTAAATAAGACAAACATGAATACTCACACTAATCCCCATTCTTTTCA-GGATTAGGC
*
1343989 ACCATAAATATAGTCTTCTCATTA
452 ACCATAAACATAGTCTTCTCATTA
* * * * * *
1344013 GGACACATGATACTGAAGCTTTGGTTTTGCAACAAAGGCTTTCTTCCCACCAGTTTTTGTAAACT
1 GGATACATGATATTGAAGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTGTTGTAAAGT
* * * * * * * *
1344078 CTAAGTTCACGCCTCAAATGCGACAAACATGGATTCTACTGATGATTTTCATTCTTTTTATGATT
66 CTAAGTTCATGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATA
* * * * * * * **
1344143 TGGCACAATAAACACATTTTCCTCATTAGGATGCA-TGATATTAATGCTTTGCTTTTGCAACAAA
131 AGGCACTATAAACACATTCTCCGCATTAGGAT-AATTGACATTGATGCTTTGCTTTTGCATGAAA
* * * * * * * ** ** ** *
1344207 GGC-TTTC-TTCCAACCAATTGT--TGTAAAGTCTAAGTTCGTGCCTCAAACGAGACAAATATGG
195 AGCTTTTCTTTGC--CCAATTATCCT-TAAAATCAAAGTTCATCCCTTGAATAAGACAAGCATCG
* * * * *** * * * * *
1344268 ATTCTACTAA-TGATTTTCATTCTTTTTGTGATTTGG--CCCTATAACAACATTTTCC-TCTTTA
257 ATTCTCCTAACAG-TCTCCATT-TTTTCAAGATTGGGAAGCC-AAAAC-ACA-TTGCCTTCATTA
* * * * ** * * * * *
1344329 GGATACATGATATTAATGCTTTGGTTTCATAACAAAGGC-TTTCTTCCCACCAATTATTGTA-AA
317 GGATACACGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTCCCACCATTTTTTATAGAA
* * * * * * * * * ** *
1344392 GTCTAA-GTTCGTGC-CTCAAATGAGACAAATATGGATTCT-AGTAATGATCTTCATTCTTTT-T
382 -TCAAAGGTT-GT-CTCTTAAATAAGACAAACATGAATACTCA-CACTAATCCCCATTCTTTTCA
* * * * * *
1344453 GTGA-TATGGCACTATGAACACATTCTCCGCATTA
443 G-GATTA-GGCACCATAAACATAGTCTTCTCATTA
* ** ** ** * ** *
1344487 GGATA-ATTGACATTGATATTTTTCTTTTGCGTGA-AAA-CCTTTTCTTTGC-CCAATTATCCT-
1 GGATACA-TGATATTGA-AGCTTTGGTTT-CGCAACAAAGGC-TTTCTTCCCACCAATTGT--TG
* * * * ** * * * ** *
1344547 TAAAATCAAAGTTCTTCCCTTGAATAAGACAAGTATCGATTCTCCTAA-GAGTCTCCATT-TTTT
60 TAAAGTCTAAGTTCATGCCTCAAATGAGACAAATATGGATTCTAGTAATGA-TCTTCATTCTTTT
** * * * * * * *
1344610 TCAAGATTAGGAAGCCA-AAACACATTGCCTTCG--TTAGGATGCA-CGACATTGATGCTTTG-G
124 T-GTGATAAGGCA-CTATAAACACATT--CTCCGCATTAGGAT-AATTGACATTGATGCTTTGCT
** * ** ** * * ** * *
1344670 GGT-CATAAGAAAAGCTTTTC-TT-CCC-GTCGTTTTTGATAGATTCCAAGTTTTTCTCTTAAAT
184 TTTGCAT--GAAAAGCTTTTCTTTGCCCAATTATCCTT-A-A-AATCAAAGTTCATCCCTTGAAT
* * * * * * * * *
1344731 AAGACTAA-CAT-GAATACT--TACACTAATCCCCATTCTTTTCAGGGTTAGGTA-CCATAA-AT
244 AAGAC-AAGCATCG-ATTCTCCTA-AC-AGTCTCCATT-TTTTCAAGATTGGGAAGCCAAAACAC
* * * * * * * * * *
1344790 ATAGTCTTCTCATTAGGATACATGATACTGAAGCTTTGGTTTTGCAA-CAAAGGTTTTCTTCCCA
304 ATTG-CCT-TCATTAGGATACACGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTCCCA
* * * ** * ** * *
1344854 CCAGTTATTGT-GAAGTTTAA--TT-TCATGCCTCAAATGCGACAAACATGGATTCT-ACTGA-T
367 CCATTTTTTATAGAA-TCAAAGGTTGTC-T--CTTAAATAAGACAAACATGAATACTCAC--ACT
* **** * * * * * * * *
1344913 GATTTTTATTGTTTT-TGTGATTTGGCACTATAAAAACA-TTTTCCTCTTTA
426 AATCCCCATTCTTTTCAG-GATTAGGCACCATAAACATAGTCTT-CTCATTA
**
1344963 GGATACATGATATT-AATGCTTTGGTTTCATAACAAAGGCTTTCTTCCCACCAATTGTTGTAAAG
1 GGATACATGATATTGAA-GCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTGTTGTAAAG
* * * *
1345027 TCTACGTTCGTGCCTCAAATAAGACAAATATGGATTCTAGTAATGATCTTCA-T-TTTTTGTGCT
65 TCTAAGTTCATGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATTCTTTTTGTGAT
* * * *
1345090 AAGGCACTATAAACACATTCTCCGCATTAGGATAATTGACGTTGATGTTTTTCTTTTGCAT-TAA
130 AAGGCACTATAAACACATTCTCCGCATTAGGATAATTGACATTGATGCTTTGCTTTTGCATGAAA
* * * * *
1345154 AGTCTTTTCTTTGCCCAATTATCCTTAAAATGAAGGTCCATCCCCTGAATAAGGCAAGCATCGAT
195 AG-CTTTTCTTTGCCCAATTATCCTTAAAATCAAAGTTCATCCCTTGAATAAGACAAGCATCGAT
* * **
1345219 TCTCATAATAGTCTCCACTCCTTTCAAGATTGGGAAGCCAAAACACATTGCCTTCATTAGGATAC
259 TCTCCTAACAGTCTCCA-TTTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTCATTAGGATAC
* * * * *
1345284 ACGACATTGATGCTTTGATGTCTCAAGAAAAGCTTTTCTTCTCGCCATTTTTGATAGAATCAAAG
323 ACGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTCCCACCATTTTTTATAGAATCAAAG
* * * *
1345349 TTTGTCTCTTAAATAAGA-AAGAC-TCGAATACCCACCCTAATCCCCATTCTTTTTAGGATTAGG
388 GTTGTCTCTTAAATAAGACAA-ACAT-GAATACTCACACTAATCCCCATTCTTTTCAGGATTAGG
*
1345412 CTCCATAAACATAGTCTTCTCATTA
451 CACCATAAACATAGTCTTCTCATTA
* *
1345437 GGATACATGATATTGAAGCTTTGGTTTCACAACAAAGGTTTTCTTCCCACCAATTGTTGTAAAGT
1 GGATACATGATATTGAAGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTGTTGTAAAGT
* * ** *
1345502 CTAAGTTCGTGCCTTAAATGAGACAAATATGGATTCTAGTGTTGATCATCATTCTTTTTGTGATA
66 CTAAGTTCATGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATA
* * * * * *
1345567 AGGAAGTATAAACACATTCTCCGCATTAGGATAATTGACATTGATGTTTTTCTTTGGCATGGAAA
131 AGGCACTATAAACACATTCTCCGCATTAGGATAATTGACATTGATGCTTTGCTTTTGCATGAAAA
* * *
1345632 TCTTTTCTTTGCCCAATTATTCC-TAAAATGAAAGTTCATCCCTTGAATAAGAAAAGCATCGATT
196 GCTTTTCTTTGCCCAATTA-TCCTTAAAATCAAAGTTCATCCCTTGAATAAGACAAGCATCGATT
* ** *
1345696 CTCCTAACAATCTCCATTTTTTCCAAGATTGGGAAGCCAAAATGCATTGCCTTCATTAGGAAACA
260 CTCCTAACAGTCTCCATTTTTT-CAAGATTGGGAAGCCAAAACACATTGCCTTCATTAGGATACA
* ** * * *
1345761 CGACATTGATGCTTTGGTGCCGCAAGAAAAGCTTTTCTTCCTGCCATTTTTGAGAGAATCAAAGT
324 CGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTCCCACCATTTTTTATAGAATCAAAGG
* * * *
1345826 TTGTCTCTTAAATAAGAGAAACATGAATACTCACACTAATCCCCAGTCTTTTTACGG-TTAGGCC
389 TTGTCTCTTAAATAAGACAAACATGAATACTCACACTAATCCCCATTCTTTTCA-GGATTAGGCA
*
1345890 CCAT-AACATAGTCTTCTCGTTA
453 CCATAAACATAGTCTTCTCATTA
* * * * *
1345912 GGATACATGATATTGAATCTTTGGTTTTGCAACAAAGGCTTTCCTCCCACCAATTTTTGAAAAGT
1 GGATACATGATATTGAAGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTGTTGTAAAGT
* * ** * *
1345977 CTAAGTTTTCATGCCTTAAATGCA-ACAAACATGGATTCT-CCAATGATTTTCATTCTTTTTCTG
66 CTAAG--TTCATGCCTCAAATG-AGACAAATATGGATTCTAGTAATGATCTTCATTCTTTTTGTG
** * * * *
1346040 ATTTGGCACTATAAACACATTTTCCTCATTAGGATACA-TGATATTAATGCTTTG
128 ATAAGGCACTATAAACACATTCTCCGCATTAGGATA-ATTGACATTGATGCTTTG
1346094 ATTTCGCAAC
Statistics
Matches: 3068, Mismatches: 725, Indels: 378
0.74 0.17 0.09
Matches are distributed among these distances:
471 4 0.00
472 14 0.00
473 144 0.05
474 513 0.17
475 781 0.25
476 1520 0.50
477 86 0.03
478 6 0.00
ACGTcount: A:0.29, C:0.20, G:0.15, T:0.36
Consensus pattern (475 bp):
GGATACATGATATTGAAGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTGTTGTAAAGT
CTAAGTTCATGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATA
AGGCACTATAAACACATTCTCCGCATTAGGATAATTGACATTGATGCTTTGCTTTTGCATGAAAA
GCTTTTCTTTGCCCAATTATCCTTAAAATCAAAGTTCATCCCTTGAATAAGACAAGCATCGATTC
TCCTAACAGTCTCCATTTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTCATTAGGATACACG
ACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTCCCACCATTTTTTATAGAATCAAAGGTT
GTCTCTTAAATAAGACAAACATGAATACTCACACTAATCCCCATTCTTTTCAGGATTAGGCACCA
TAAACATAGTCTTCTCATTA
Found at i:1343595 original size:792 final size:792
Alignment explanation
Indices: 1342584--1345123 Score: 4165
Period size: 792 Copynumber: 3.2 Consensus size: 792
1342574 AGTCTTCTCG
*
1342584 TTAGGATACATGATATTGAA-GCTTTGGTTTCGCAACAAAGGCTTTCTTCTC-ACCAATTTTTGT
1 TTAGGATACATGATATT-AATGCTTTGGTTTCGCAACAAAGGCTTTCTTC-CAACCAATTGTTGT
* * *
1342647 AAACTCTAAGTTCATGCCTCAAATGTGACAAACATGGATTCTACTAATGATTTTCATTCTTTTTG
64 AAAGTCTAAGTTCATGCCTCAAATGAGACAAATATGGATTCTACTAATGATTTTCATTCTTTTTG
* * **
1342712 TGATTTGGCACTATAAACACATTTTCCTCATTAGGATATATGATATTAATGCTTTGGTTTCGCAA
129 TGATTTGGCACTATAAAAACATTTTCCTCATTAGGATACATGATATTAATGCTTTGGTTTCATAA
* * *
1342777 TAAAGGCTTTCTTCCCACCAATTGTTGTAAAGTCTAAGTTCGTGCCACAAATGAGATAAATATGG
194 CAAAGGCTTTCTTCCCACCAATTGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGG
*
1342842 ATTCTAGTAATGATCTTCATTCTTTTTGTGATATGGCACTATAAACACATTCTCCGCATTAGGAT
259 ATTCTAGTAATGATCTTCATTCTTTTTGTGATATGGCACTATGAACACATTCTCCGCATTAGGAT
* *
1342907 AACTGACATTGATGTTTTTCTTTTGCATGAAAACCTTTTCTTTGCCCAATTATCCTTAAAATCAA
324 AATTGACATTGATATTTTTCTTTTGCATGAAAACCTTTTCTTTGCCCAATTATCCTTAAAATCAA
** * * *
1342972 AGTTCTTCCCTTTTATAAGACTAGCATTGATTCTCCTAACAGTCTCCATTTTTTGCAAGATTGGG
389 AGTTCTTCCCTTGAATAAGACAAGTATCGATTCTCCTAACAGTCTCCATTTTTTGCAAGATTGGG
*
1343037 AAACCAAAACACATTGCCTTCGTTAGGATGCACGACATTGATGCTTTGGGGTCACAAGAAAAGCT
454 AAGCCAAAACACATTGCCTTCGTTAGGATGCACGACATTGATGCTTTGGGGTCACAAGAAAAGCT
*
1343102 TTTCTTCTCGCTGTTTTTGATAGAATCCAAGTTTTTCTCTTAAATAAGACTAACATGAATACTCA
519 TTTCTTCCCGCTGTTTTTGATAGAATCCAAGTTTTTCTCTTAAATAAGACTAACATGAATACTCA
* *
1343167 CACTAATCCCCATTCTTTTCAGGGTTAGGTACCATAAATATAGTATTCTTATTAGGATACATGAT
584 CACTAATCCCCATTCTTTTCAGGGTTAGGTACCATAAATATAGTCTTCTCATTAGGATACATGAT
* *
1343232 ACTGAAGCATTGGTCTTGCAACAAAGGCTTTCTTCCCACCAGTTTTTGTAAAGTCTAAGTTCATG
649 ACTGAAGCTTTGGTTTTGCAACAAAGGCTTTCTTCCCACCAGTTTTTGTAAAGTCTAAGTTCATG
* * *
1343297 CCTCAAATGCGACAAACATGTATTCTACTAATGATTTTCATTCTTTTTTTGATTTGGCACAATAA
714 CCTCAAATGCGACAAACATGGATTCTACTGATGATTTTCATTCTTTTTATGATTTGGCACAATAA
1343362 ACACATTTTCCTCA
779 ACACATTTTCCTCA
*
1343376 TTAGGATGCATGATATTAATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCAACCAATTGTTGTAA
1 TTAGGATACATGATATTAATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCAACCAATTGTTGTAA
* * *
1343441 AGTCTAAGTTCATGCCTCAAATGAGACAATTATGGATTCTACTAACGATTTTCATTCTTTATGTG
66 AGTCTAAGTTCATGCCTCAAATGAGACAAATATGGATTCTACTAATGATTTTCATTCTTTTTGTG
* * *
1343506 ATTTGGCACAATAAAAACATTTTCCTCTTTAGGATACATGTTATTAATGCTTTGGTTTCATAACA
131 ATTTGGCACTATAAAAACATTTTCCTCATTAGGATACATGATATTAATGCTTTGGTTTCATAACA
* * * * *
1343571 AAGGCTTTCTTCCCACCGATTGTTGTAAAGTCTTAGTTTGTTCCTCAAATGAGACAAATATAGAT
196 AAGGCTTTCTTCCCACCAATTGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGAT
* *
1343636 TCTAGTAATGATCTTCATTCTTTTTGTGATATGGCACTGTGAACACATTCTCCGCTTTAGGATAA
261 TCTAGTAATGATCTTCATTCTTTTTGTGATATGGCACTATGAACACATTCTCCGCATTAGGATAA
1343701 TTGACATTGATATTTTTCTTTTGCATGAAAACCTTTTCTTTGCCCAATTATCCTTAAAATCAAAG
326 TTGACATTGATATTTTTCTTTTGCATGAAAACCTTTTCTTTGCCCAATTATCCTTAAAATCAAAG
1343766 TTCTTCCCTTGAATAAGACAAGTATCGATTCTCCTAACAGTCTCCA-TTTTTGTCAAGATTGGGA
391 TTCTTCCCTTGAATAAGACAAGTATCGATTCTCCTAACAGTCTCCATTTTTTG-CAAGATTGGGA
*
1343830 AGCCAAAACACATTGCCTTCGTTAGGATGCACGACATTGATGCTTTGCGGTCACAAGAAAAGCTT
455 AGCCAAAACACATTGCCTTCGTTAGGATGCACGACATTGATGCTTTGGGGTCACAAGAAAAGCTT
* ** *
1343895 TTCTTCCCACCATTTTTGATAGAATCCGAGTTTTTCTCTTAAATAAGACTAACATGAATACTCAC
520 TTCTTCCCGCTGTTTTTGATAGAATCCAAGTTTTTCTCTTAAATAAGACTAACATGAATACTCAC
* * *
1343960 ACTAATCCCCGTTCTTTTCATGGTTAGGTACCATAAATATAGTCTTCTCATTAGGACACATGATA
585 ACTAATCCCCATTCTTTTCAGGGTTAGGTACCATAAATATAGTCTTCTCATTAGGATACATGATA
* *
1344025 CTGAAGCTTTGGTTTTGCAACAAAGGCTTTCTTCCCACCAGTTTTTGTAAACTCTAAGTTCACGC
650 CTGAAGCTTTGGTTTTGCAACAAAGGCTTTCTTCCCACCAGTTTTTGTAAAGTCTAAGTTCATGC
1344090 CTCAAATGCGACAAACATGGATTCTACTGATGATTTTCATTCTTTTTATGATTTGGCACAATAAA
715 CTCAAATGCGACAAACATGGATTCTACTGATGATTTTCATTCTTTTTATGATTTGGCACAATAAA
1344155 CACATTTTCCTCA
780 CACATTTTCCTCA
* * *
1344168 TTAGGATGCATGATATTAATGCTTTGCTTTTGCAACAAAGGCTTTCTTCCAACCAATTGTTGTAA
1 TTAGGATACATGATATTAATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCAACCAATTGTTGTAA
* *
1344233 AGTCTAAGTTCGTGCCTCAAACGAGACAAATATGGATTCTACTAATGATTTTCATTCTTTTTGTG
66 AGTCTAAGTTCATGCCTCAAATGAGACAAATATGGATTCTACTAATGATTTTCATTCTTTTTGTG
* * *
1344298 ATTTGGCCCTATAACAACATTTTCCTCTTTAGGATACATGATATTAATGCTTTGGTTTCATAACA
131 ATTTGGCACTATAAAAACATTTTCCTCATTAGGATACATGATATTAATGCTTTGGTTTCATAACA
*
1344363 AAGGCTTTCTTCCCACCAATTATTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGAT
196 AAGGCTTTCTTCCCACCAATTGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGAT
1344428 TCTAGTAATGATCTTCATTCTTTTTGTGATATGGCACTATGAACACATTCTCCGCATTAGGATAA
261 TCTAGTAATGATCTTCATTCTTTTTGTGATATGGCACTATGAACACATTCTCCGCATTAGGATAA
*
1344493 TTGACATTGATATTTTTCTTTTGCGTGAAAACCTTTTCTTTGCCCAATTATCCTTAAAATCAAAG
326 TTGACATTGATATTTTTCTTTTGCATGAAAACCTTTTCTTTGCCCAATTATCCTTAAAATCAAAG
* * *
1344558 TTCTTCCCTTGAATAAGACAAGTATCGATTCTCCTAAGAGTCTCCATTTTTTTCAAGATTAGGAA
391 TTCTTCCCTTGAATAAGACAAGTATCGATTCTCCTAACAGTCTCCATTTTTTGCAAGATTGGGAA
*
1344623 GCCAAAACACATTGCCTTCGTTAGGATGCACGACATTGATGCTTTGGGGTCATAAGAAAAGCTTT
456 GCCAAAACACATTGCCTTCGTTAGGATGCACGACATTGATGCTTTGGGGTCACAAGAAAAGCTTT
* *
1344688 TCTTCCCG-TCGTTTTTGATAGATTCCAAGTTTTTCTCTTAAATAAGACTAACATGAATACTTAC
521 TCTTCCCGCT-GTTTTTGATAGAATCCAAGTTTTTCTCTTAAATAAGACTAACATGAATACTCAC
1344752 ACTAATCCCCATTCTTTTCAGGGTTAGGTACCATAAATATAGTCTTCTCATTAGGATACATGATA
585 ACTAATCCCCATTCTTTTCAGGGTTAGGTACCATAAATATAGTCTTCTCATTAGGATACATGATA
* * * * *
1344817 CTGAAGCTTTGGTTTTGCAACAAAGGTTTTCTTCCCACCAGTTATTGTGAAGTTTAATTTCATGC
650 CTGAAGCTTTGGTTTTGCAACAAAGGCTTTCTTCCCACCAGTTTTTGTAAAGTCTAAGTTCATGC
* * * *
1344882 CTCAAATGCGACAAACATGGATTCTACTGATGATTTTTATTGTTTTTGTGATTTGGCACTATAAA
715 CTCAAATGCGACAAACATGGATTCTACTGATGATTTTCATTCTTTTTATGATTTGGCACAATAAA
* *
1344947 AACATTTTCCTCT
780 CACATTTTCCTCA
** *
1344960 TTAGGATACATGATATTAATGCTTTGGTTTCATAACAAAGGCTTTCTTCCCACCAATTGTTGTAA
1 TTAGGATACATGATATTAATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCAACCAATTGTTGTAA
* * * * *
1345025 AGTCTACGTTCGTGCCTCAAATAAGACAAATATGGATTCTAGTAATGATCTTCA-T-TTTTTGTG
66 AGTCTAAGTTCATGCCTCAAATGAGACAAATATGGATTCTACTAATGATTTTCATTCTTTTTGTG
* ** * * *
1345088 CTAAGGCACTATAAACACATTCTCCGCATTAGGATA
131 ATTTGGCACTATAAAAACATTTTCCTCATTAGGATA
1345124 ATTGACGTTG
Statistics
Matches: 1624, Mismatches: 119, Indels: 12
0.93 0.07 0.01
Matches are distributed among these distances:
790 35 0.02
791 10 0.01
792 1574 0.97
793 5 0.00
ACGTcount: A:0.29, C:0.19, G:0.15, T:0.37
Consensus pattern (792 bp):
TTAGGATACATGATATTAATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCAACCAATTGTTGTAA
AGTCTAAGTTCATGCCTCAAATGAGACAAATATGGATTCTACTAATGATTTTCATTCTTTTTGTG
ATTTGGCACTATAAAAACATTTTCCTCATTAGGATACATGATATTAATGCTTTGGTTTCATAACA
AAGGCTTTCTTCCCACCAATTGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGAT
TCTAGTAATGATCTTCATTCTTTTTGTGATATGGCACTATGAACACATTCTCCGCATTAGGATAA
TTGACATTGATATTTTTCTTTTGCATGAAAACCTTTTCTTTGCCCAATTATCCTTAAAATCAAAG
TTCTTCCCTTGAATAAGACAAGTATCGATTCTCCTAACAGTCTCCATTTTTTGCAAGATTGGGAA
GCCAAAACACATTGCCTTCGTTAGGATGCACGACATTGATGCTTTGGGGTCACAAGAAAAGCTTT
TCTTCCCGCTGTTTTTGATAGAATCCAAGTTTTTCTCTTAAATAAGACTAACATGAATACTCACA
CTAATCCCCATTCTTTTCAGGGTTAGGTACCATAAATATAGTCTTCTCATTAGGATACATGATAC
TGAAGCTTTGGTTTTGCAACAAAGGCTTTCTTCCCACCAGTTTTTGTAAAGTCTAAGTTCATGCC
TCAAATGCGACAAACATGGATTCTACTGATGATTTTCATTCTTTTTATGATTTGGCACAATAAAC
ACATTTTCCTCA
Found at i:1343900 original size:634 final size:625
Alignment explanation
Indices: 1340982--1346675 Score: 2991
Period size: 634 Copynumber: 9.0 Consensus size: 625
1340972 AGTCTTCTCG
* *
1340982 TTAGGATACATGATATTGAA-GCTTTGGTTTTACAACAAAGGATTTCTTCCCACCAATTGTTGTA
1 TTAGGATACATGATATT-AATGCTTTGGTTTCACAACAAAGGCTTTCTTCCCACCAATTGTTGTA
* * * * *
1341046 AAGTCTATGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGTCATAATCTTCATTCTTTCTGT
65 AAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTACTAATGATCTTCATTCTTTTTGT
* * * *
1341111 GATATGGCACTAC-AAACACATTTTCTGCATTAGGATAATTGACATTGAAGTTTTTCTTTTACAT
130 GATATGGCACT-CTAAACACATTCTCCGC-TTAGGATAATTGACATTGATGTTTTTCTTTTGCAT
* * *
1341175 GAAAACCTTTTCTTTGCCCCATTATCCGTAAAATCAAAGTTCTTCCCTTGAATAAGACAAGCTTC
193 GAAAACCTTTTCTTTGCCCAATTATCCTTAAAATCAAAGTTCTTCCCTTGAATAAGACAAGCATC
* *
1341240 GATTCTCCTAATAGTCTCCAATTTTTTCAAGATTGGAAAGCCAAAACACATTGCCTTCGTTAGGA
258 GATTCT-CTAACAGTCTCC-ATTTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTCGTTAGGA
* * * ** * *
1341305 TGCACGACATTGATGCTTTGGGGTCCCAAGAAAAGCTTTTCTTCTCGTCGTTTTTGACAGAATCC
321 TACACGACATTGATGCTTT-GGGTCGCAAGAAAAGCTTTTCTTCCCACCATTTTTG-TA-AATCC
* * * * *
1341370 AAGTTTGTCTCTTAAAAAAGACTAACATGAATACTCACACTAATCCCCATTCTTTTCAGGGTTAG
383 AAGTTTG-CTCTTAAATAAGACAAACATGAATACTCACAATAATCCCCATTCTTTTCATGATTAG
* * * * * * *
1341435 GTACCATAAATATAGTCTTCTTATTAGGACACATGATACTGAAGCTTTGGTTTTGCAACAAAGGC
447 GCACCATAAACACA-TCTTCTCATTAGGATACATGATA-TTAAGCTTTGGTTTCGCAACAAAGGC
* * * *
1341500 TTTCTTCCCACCAGTTTTTGTAAACTCTAAGTTCATGCCTCAAATGTA-ACAAACATGGATTCTA
510 TTTCTTCCCACCAATTGTTGTAAAGTCTAAGTTCATGCCTCAAATG-AGACAAATATGGATTCTA
* *
1341564 CTGATGA-TTTCTTTCTTTTTGTGATTTGGCACAATAAACACATTTTCCTCA
574 CTAATGATTTTCATTCTTTTTGTGATTTGGCACAATAAACACATTTTCCTCA
**
1341615 TTAGGATACATGAGATAAACATGGATATATGATATTAATGCTTTGGTTTTGCAACAAAGGCTTTC
1 -T----T--A-G-GAT--AC--------ATGATATTAATGCTTTGGTTTCACAACAAAGGCTTTC
* * * * *
1341680 TTCCCACTAATTGTTGTAAAGTCTAAGTTCATACCTCAAAT--GACACATATGGATTCTAGTAAT
47 TTCCCACCAATTGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTACTAAT
* * * **
1341743 GATCTTCATTCTTTTTGTGATATGGCACTACT-AACACAATCTCCGCATCAAGATAATTGACACA
112 GATCTTCATTCTTTTTGTGATATGGCACT-CTAAACACATTCTCCGC-TTAGGATAATTGACATT
* ** * *
1341807 GATGTTTTTCTTTTGCATGAAAACCATTTCTTTGCCCAATTATCCTCGAAATGAAAGTTCATCCC
175 GATGTTTTTCTTTTGCATGAAAACCTTTTCTTTGCCCAATTATCCTTAAAATCAAAGTTCTTCCC
* * * **
1341872 TTGAATAAGACAAGCCTC-ACTTCTGATAATAGTCTCCACTCCTTTCAAGATTGGGAAGCCAAAA
240 TTGAATAAGACAAGCATCGA-TTCT-CTAACAGTCTCCA-TTTTTTCAAGATTGGGAAGCCAAAA
* * * * * * * *
1341936 CAC-TATGCTTTTGTTCGAATACCCGACATTGATGCTTCGGTGTCGCAAGAAATGCTTTTTTTCC
302 CACAT-TGCCTTCGTTAGGATACACGACATTGATGCTTTGG-GTCGCAAGAAAAGCTTTTCTTCC
* * * *
1342000 CGCCATTTTTGATTGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCACAAAAATC
365 CACCATTTTTG--TAAATCCAAGTTTG-CTCTTAAATAAGACAAACATGAATACTCACAATAATC
* * * *
1342065 CCCATTCTTTTCAAGATTAGGCACCATAAACATCGTCTTCTTATTAGGATACAAGATATTGAAGC
427 CCCATTCTTTTCATGATTAGGCACCATAAACA-CATCTTCTCATTAGGATACATGATATT-AAGC
* * * *
1342130 TTTGGTTTCGCAACAAAAGTTTTCTTCCCACCAATTATTGTAAAGTC-ACAGTTCGTGCCTCAAA
490 TTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTGTTGTAAAGTCTA-AGTTCATGCCTCAAA
* * * ** * ** *
1342194 TGAGACATATATGGATTCTAGTATTGATCATCATTCTATTTGTGATAAGGCACTATAAACACATT
554 TGAGACAAATATGGATTCTACTAATGATTTTCATTCTTTTTGTGATTTGGCACAATAAACACATT
* *
1342259 CTCCGCA
619 TTCCTCA
* * * ** * ** *
1342266 TTAGGATA-ATTGACATTGATGCTTTGCTTTTC-CATGGAAA-TCTTTTCTTTGC-CCAATTATC
1 TTAGGATACA-TGATATTAATGCTTTG-GTTTCACA-ACAAAGGC-TTTCTTCCCACCAATTGT-
* * ** * ** * ** * * * *
1342327 CT-TAAAATCAAAGTTTATTCCTTGAATAAGACAAGGATCGATTCTCCTAA-CAGTCTCCATT-T
61 -TGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTACTAATGA-TCTTCATTCT
*** * * * ** *
1342389 TTTCCAAGAT-TGGGAAGC-CAAAACACATTGCCTTCG-TTAGGATACA-CAACATTGATGCTTT
124 TTT-TGTGATAT-GGCA-CTCTAAACACATT--CTCCGCTTAGGATA-ATTGACATTGATGTTTT
** * * * * * ** * * * *
1342450 GGTGTCGCAAGAAAAGCTTTTC-TTCCCGCCGTT-T-TTTATAGAATCAAAGGTT-GTCTCTTAA
183 TCTTTTGCATGAAAACCTTTTCTTTGCC-CAATTATCCTTA-A-AATCAAA-GTTCTTCCCTTGA
* * * * * * * *
1342511 ATAAGA-AAGACAT-GAATACTC-ACACTAATCCCCATTCTTTTCAGGGTTAGGTA-CCATAA-A
244 ATAAGACAAG-CATCG-ATTCTCTA-AC-AGTCTCCATT-TTTTCAAGATTGGGAAGCCAAAACA
* * * * * * * * *
1342571 CATAGTCTTCTCGTTAGGATACATGATATTGAAGCTTTGGTTTCGCAACAAAGGC-TTTCTTCTC
304 CATTG-CCT-TCGTTAGGATACACGACATTGATGCTTTGG-GTCGCAAGAAAAGCTTTTCTTCCC
* * ** * * *
1342635 ACCAATTTTTGTAAACTCTAAGTTCATGC-CTCAAATGTGACAAACATGGATTCT-ACTAATGAT
366 ACC-ATTTTTGTAAA-TCCAAGTT--TGCTCTTAAATAAGACAAACATGAATACTCAC-AATAAT
*** ** * * * *
1342698 TTTCATTCTTTTTGTGATTTGGCACTATAAACACATTTTCCTCATTAGGATATATGATATTAATG
426 CCCCATTCTTTTCATGATTAGGCACCATAAACACATCTT-CTCATTAGGATACATGATATTAA-G
* * *
1342763 CTTTGGTTTCGCAATAAAGGCTTTCTTCCCACCAATTGTTGTAAAGTCTAAGTTCGTGCCACAAA
489 CTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTGTTGTAAAGTCTAAGTTCATGCCTCAAA
* * * * *
1342828 TGAGATAAATATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATATGGCACTATAAACACATT
554 TGAGACAAATATGGATTCTACTAATGATTTTCATTCTTTTTGTGATTTGGCACAATAAACACATT
* *
1342893 CTCCGCA
619 TTCCTCA
* * * ** ** ** ** ** *
1342900 TTAGGATA-ACTGACATTGATGTTTTTCTTTTGCATGAAAACCTTTTCTTTGC-CCAATTATCCT
1 TTAGGATACA-TGATATTAATGCTTTGGTTTCACAACAAAGGC-TTTCTTCCCACCAATTGT--T
* * * * *** * * ** * * * *
1342963 -TAAAATCAAAGTTCTTCCCTTTTATAAGACTAGCATTGATTCTCCTAA-CAGTCTCCA-T-TTT
62 GTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTACTAATGA-TCTTCATTCTTT
* * * * * * * *
1343024 TTGCAAGAT-TGGGAAAC-CAAAACACATTGCCTTCG-TTAGGATGCA-CGACATTGATGCTTTG
126 TTG--TGATAT-GG-CACTCTAAACACATT--CTCCGCTTAGGAT-AATTGACATTGATGTTTTT
*** ** * * * ** * *** * * * * *
1343085 GGGTCACAAGAAAAGCTTTTCTTCT-CGCTGTTTTTGATAGAATCCAAGTTTTTCTCTTAAATAA
184 CTTTTGCATGAAAACCTTTTCTT-TGCCCAATTATCCTTAAAATCAAAGTTCTTCCCTTGAATAA
* * * * * * * * *
1343149 GACTAA-CAT-GAATACTC-ACACTAATCCCCATTCTTTTCAGGGTTAGGTA-CCATAAATATAG
248 GAC-AAGCATCG-ATTCTCTA-AC-AGTCTCCATT-TTTTCAAGATTGGGAAGCCA-AAACACA-
* * * * * * * * *
1343210 TAT-TCTT-ATTAGGATACATGATACTGAAGCATT-GGTCTTGCAACAAAGGC-TTTCTTCCCAC
306 T-TGCCTTCGTTAGGATACACGACATTGATGCTTTGGGTC--GCAAGAAAAGCTTTTCTTCCCAC
* * ** * * * **
1343271 CAGTTTTTGTAAAGTCTAAGTTCATGC-CTCAAATGCGACAAACATGTATTCT-ACTAATGATTT
368 CA-TTTTTGTAAA-TCCAAGTT--TGCTCTTAAATAAGACAAACATGAATACTCAC-AATAATCC
* ** * * * *
1343334 TCATTCTTTTTTTGATTTGGCACAATAAACACATTTTCCTCATTAGGATGCATGATATTAATGCT
428 CCATTCTTTTCATGATTAGGCACCATAAACACATCTT-CTCATTAGGATACATGATATTAA-GCT
*
1343399 TTGGTTTCGCAACAAAGGCTTTCTTCCAACCAATTGTTGTAAAGTCTAAGTTCATGCCTCAAATG
491 TTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTGTTGTAAAGTCTAAGTTCATGCCTCAAATG
* * * *
1343464 AGACAATTATGGATTCTACTAACGATTTTCATTCTTTATGTGATTTGGCACAATAAAAACATTTT
556 AGACAAATATGGATTCTACTAATGATTTTCATTCTTTTTGTGATTTGGCACAATAAACACATTTT
*
1343529 CCTCT
621 CCTCA
* * *
1343534 TTAGGATACATGTTATTAATGCTTTGGTTTCATAACAAAGGCTTTCTTCCCACCGATTGTTGTAA
1 TTAGGATACATGATATTAATGCTTTGGTTTCACAACAAAGGCTTTCTTCCCACCAATTGTTGTAA
* * * * *
1343599 AGTCTTAGTTTGTTCCTCAAATGAGACAAATATAGATTCTAGTAATGATCTTCATTCTTTTTGTG
66 AGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTACTAATGATCTTCATTCTTTTTGTG
* * *
1343664 ATATGGCACTGTGAACACATTCTCCGCTTTAGGATAATTGACATTGATATTTTTCTTTTGCATGA
131 ATATGGCACTCTAAACACATTCTCCGC-TTAGGATAATTGACATTGATGTTTTTCTTTTGCATGA
*
1343729 AAACCTTTTCTTTGCCCAATTATCCTTAAAATCAAAGTTCTTCCCTTGAATAAGACAAGTATCGA
195 AAACCTTTTCTTTGCCCAATTATCCTTAAAATCAAAGTTCTTCCCTTGAATAAGACAAGCATCGA
*
1343794 TTCTCCTAACAGTCTCCATTTTTGTCAAGATTGGGAAGCCAAAACACATTGCCTTCGTTAGGATG
260 TTCT-CTAACAGTCTCCATTTTT-TCAAGATTGGGAAGCCAAAACACATTGCCTTCGTTAGGATA
* *
1343859 CACGACATTGATGCTTTGCGGTCACAAGAAAAGCTTTTCTTCCCACCATTTTTGATAGAATCCGA
323 CACGACATTGATGCTTTG-GGTCGCAAGAAAAGCTTTTCTTCCCACCATTTTTG-TA-AATCCAA
* * * * * *
1343924 GTTTTTCTCTTAAATAAGACTAACATGAATACTCACACTAATCCCCGTTCTTTTCATGGTTAGGT
385 G-TTTGCTCTTAAATAAGACAAACATGAATACTCACAATAATCCCCATTCTTTTCATGATTAGGC
* * * * *
1343989 ACCATAAATATAGTCTTCTCATTAGGACACATGATACTGAAGCTTTGGTTTTGCAACAAAGGCTT
449 ACCATAAACACA-TCTTCTCATTAGGATACATGATA-TTAAGCTTTGGTTTCGCAACAAAGGCTT
* * * * * * *
1344054 TCTTCCCACCAGTTTTTGTAAACTCTAAGTTCACGCCTCAAATGCGACAAACATGGATTCTACTG
512 TCTTCCCACCAATTGTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAATATGGATTCTACTA
*
1344119 ATGATTTTCATTCTTTTTATGATTTGGCACAATAAACACATTTTCCTCA
577 ATGATTTTCATTCTTTTTGTGATTTGGCACAATAAACACATTTTCCTCA
* * ** *
1344168 TTAGGATGCATGATATTAATGCTTTGCTTTTGCAACAAAGGCTTTCTTCCAACCAATTGTTGTAA
1 TTAGGATACATGATATTAATGCTTTGGTTTCACAACAAAGGCTTTCTTCCCACCAATTGTTGTAA
* *
1344233 AGTCTAAGTTCGTGCCTCAAACGAGACAAATATGGATTCTACTAATGATTTTCATTCTTTTTGTG
66 AGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTACTAATGATCTTCATTCTTTTTGTG
* * * * * * **
1344298 ATTTGGC-C-CTATAACAACATTTTCCTCTTTAGGATACA-TGATATTAATG-CTTTGGTTT-CA
131 ATATGGCACTCTA-AAC-ACATTCTCCGC-TTAGGATA-ATTGACATTGATGTTTTTCTTTTGCA
* * ** * * * * ** *
1344358 TAACAAAGGC-TTTCTTCCCACCAATTAT--TGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAA
192 TGA-AAA-CCTTTTCTTTGC-CCAATTATCCT-TAAAATCAAAGTTCTTCCCTTGAATAAGACAA
** * * * * *** * * * *
1344420 ATATGGATTCTAGTAA-TGATCTTCATTCTTTTTGTGATAT-GGCA-CTATGAACACATT--CTC
253 GCATCGATTCT-CTAACAG-TCTCCATT-TTTTCAAGAT-TGGGAAGCCA-AAACACATTGCCTT
* ** *** * ** *
1344480 CGCATTAGGATA-ATTGACATTGATATTTTTCTTTTGCGTGAAAACCTTTTCTTTGCCCA--ATT
313 CG--TTAGGATACA-CGACATTGAT-GCTTTGGGTCGCAAGAAAAGCTTTTC-TT-CCCACCATT
* * * * * ** * * * *
1344542 ATCCTT-AAAATCAAAGTTCTTCCCTTGAATAAGACAAGTATCG-ATTCTC-CTAAGAGTCTCCA
372 -T--TTGTAAATCCAAGTT-TGCTCTTAAATAAGACAAACAT-GAATACTCAC-AATAATCCCCA
* * * * * * * * *
1344604 TTTTTTTCAAGATTAGGAAGCCA-AAACACAT-TGCCTTCGTTAGGATGCACGACATTGATGCTT
431 TTCTTTTCATGATTAGGCA-CCATAAACACATCT-TC-TCATTAGGATACATGATATT-AAGCTT
** ** * * ** * * * * * * * *
1344667 TGGGGTCATAAGAAAAGCTTTTCTTCCCGTC-GTTTTTGATAGATTCCAAGTT-TTTCTCTTAAA
492 TGGTTTCGCAACAAAGGC-TTTCTTCCCACCAATTGTTG-TAAAGTCTAAGTTCATGC-CTCAAA
* * * * * * * *** * * * * * * *
1344730 TAAGACTAACATGAATACTTAC-ACTAATCCCCATTCTTTTCAG-GGTTAGGTACCATAAATATA
554 TGAGACAAATATGGATTC-TACTAATGATTTTCATTCTTTT-TGTGATTTGGCACAATAAACACA
*
1344793 GTCTT-CTCA
617 -TTTTCCTCA
* ** * * * *
1344802 TTAGGATACATGATACTGAA-GCTTTGGTTTTGCAACAAAGGTTTTCTTCCCACCAGTTATTGTG
1 TTAGGATACATGATA-TTAATGCTTTGGTTTCACAACAAAGGCTTTCTTCCCACCAATTGTTGTA
* * * * * * * * *
1344866 AAGTTTAATTTCATGCCTCAAATGCGACAAACATGGATTCTACTGATGATTTTTATTGTTTTTGT
65 AAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTACTAATGATCTTCATTCTTTTTGT
* * * * * * * * **
1344931 GATTTGGCACTATAAAAACATTTTCCTCTTTAGGATACA-TGATATTAATG-CTTTGGTTT-CAT
130 GATATGGCACTCTAAACACATTCTCCGC-TTAGGATA-ATTGACATTGATGTTTTTCTTTTGCAT
* * ** * * * * * * ** *
1344993 AACAAAGGC-TTTCTTCCCACCAATTGT--TGTAAAGTCTACGTTCGTGCCTCAAATAAGACAAA
193 GA-AAA-CCTTTTCTTTGC-CCAATTATCCT-TAAAATCAAAGTTCTTCCCTTGAATAAGACAAG
* * * * * ** * ** * * *
1345055 TATGGATTCTAGTAA-TGATCTTCATTTTTT-GTGCTAAGGCA-CTATAAACACATT--CTCCGC
254 CATCGATTCT-CTAACAG-TCTCCATTTTTTCAAGATTGGGAAGCCA-AAACACATTGCCTTCG-
* * * *** * **
1345115 ATTAGGATA-ATTGACGTTGATGTTTTTCTTTTGC-ATTAAAGTCTTTTCTTTGCCCA--ATTAT
315 -TTAGGATACA-CGACATTGATG-CTTTGGGTCGCAAGAAAAG-CTTTTC-TT-CCCACCATT-T
* * * * * * * * * * * * *
1345176 CCTT-AAAAT-GAAGGTCCAT-CCCCTGAATAAGGCAAGCATCG-ATTCTCATAATAGTCTCCAC
373 --TTGTAAATCCAA-GT--TTGCTCTTAAATAAGACAAACAT-GAATACTCACAATAATCCCCAT
* * * * * * * *
1345237 TCCTTTCAAGATTGGGAAGCCA-AAACACAT-TGCCTTCATTAGGATACACGACATTGATGCTTT
432 TCTTTTCATGATTAGGCA-CCATAAACACATCT-TC-TCATTAGGATACATGATATT-AAGCTTT
* * * * * * * * * *
1345300 GATGTCTCAAGAAAAGCTTTTCTTCTCGCC-ATTTTTGATAGAA-TCAAAGTT--TGTCTCTTAA
493 GGTTTCGCAACAAAGGC-TTTCTTCCCACCAATTGTTG-TA-AAGTCTAAGTTCATG-C-CTCAA
* * * * * ** * *** * * *
1345361 ATAAGA-AAGACT-CGAATACCCAC-CCTAATCCCCATTCTTTTTAG-GATTAGGCTCCATAAAC
553 ATGAGACAA-A-TATGGAT-TCTACTAATGATTTTCATTCTTTTT-GTGATTTGGCACAATAAAC
* *
1345422 ATAGTCTT-CTCA
614 ACA-TTTTCCTCA
*
1345434 TTAGGATACATGATATTGAA-GCTTTGGTTTCACAACAAAGGTTTTCTTCCCACCAATTGTTGTA
1 TTAGGATACATGATATT-AATGCTTTGGTTTCACAACAAAGGCTTTCTTCCCACCAATTGTTGTA
* * ** *
1345498 AAGTCTAAGTTCGTGCCTTAAATGAGACAAATATGGATTCTAGTGTTGATCATCATTCTTTTTGT
65 AAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTACTAATGATCTTCATTCTTTTTGT
* * * * *
1345563 GATAAGGAAGTATAAACACATTCTCCGCATTAGGATAATTGACATTGATGTTTTTCTTTGGCATG
130 GATATGGCACTCTAAACACATTCTCCGC-TTAGGATAATTGACATTGATGTTTTTCTTTTGCATG
* * * * *
1345628 GAAATCTTTTCTTTGCCCAATTATTCC-TAAAATGAAAGTTCATCCCTTGAATAAGAAAAGCATC
194 AAAACCTTTTCTTTGCCCAATTA-TCCTTAAAATCAAAGTTCTTCCCTTGAATAAGACAAGCATC
* ** *
1345692 GATTCTCCTAACAATCTCCATTTTTTCCAAGATTGGGAAGCCAAAATGCATTGCCTTCATTAGGA
258 GATTCT-CTAACAGTCTCCATTTTTT-CAAGATTGGGAAGCCAAAACACATTGCCTTCGTTAGGA
* * ** * *
1345757 AACACGACATTGATGCTTTGGTGCCGCAAGAAAAGCTTTTCTTCCTGCCATTTTTGAGAGAATCA
321 TACACGACATTGATGCTTTGG-GTCGCAAGAAAAGCTTTTCTTCCCACCATTTTTG-TA-AATCC
* * * * * *
1345822 AAGTTTGTCTCTTAAATAAGAGAAACATGAATACTCACACTAATCCCCAGTCTTTTTACGGTTAG
383 AAGTTTG-CTCTTAAATAAGACAAACATGAATACTCACAATAATCCCCATTCTTTTCATGATTAG
* * * * *
1345887 GCCCCAT-AACATAGTCTTCTCGTTAGGATACATGATATTGAATCTTTGGTTTTGCAACAAAGGC
447 GCACCATAAACACA-TCTTCTCATTAGGATACATGATATT-AAGCTTTGGTTTCGCAACAAAGGC
* * * * *
1345951 TTTCCTCCCACCAATTTTTGAAAAGTCTAAGTTTTCATGCCTTAAATGCA-ACAAACATGGATTC
510 TTTCTTCCCACCAATTGTTGTAAAGTCTAAG--TTCATGCCTCAAATG-AGACAAATATGGATTC
* * *
1346015 T-CCAATGATTTTCATTCTTTTTCTGATTTGGCACTATAAACACATTTTCCTCA
572 TACTAATGATTTTCATTCTTTTTGTGATTTGGCACAATAAACACATTTTCCTCA
* *
1346068 TTAGGATACATGATATTAATGCTTTGATTTCGCAACAAAGGCTTTCTTCCCACCAATTGTTGTAA
1 TTAGGATACATGATATTAATGCTTTGGTTTCACAACAAAGGCTTTCTTCCCACCAATTGTTGTAA
* * * * **
1346133 AGTCTAAGTTCGTGCCTCAATTGAGATAAATATGGATTCTAGTAATGATCTCCAAGCTTTTTGTG
66 AGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTACTAATGATCTTCATTCTTTTTGTG
* * * * * ** *
1346198 ATAAGGCACTATAAACACAATCTCCTCATTACGATAAAAGACATTGAAGTTTTTCTTTTGCATGA
131 ATATGGCACTCTAAACACATTCTCCGC-TTAGGATAATTGACATTGATGTTTTTCTTTTGCATGA
* * * * * * * * * *
1346263 AAATCTTTTCTTTCCCCTATTTTCCTTAAAATGAATGTTCATCCCTTGAATAGGATAAGCCTCGA
195 AAACCTTTTCTTTGCCCAATTATCCTTAAAATCAAAGTTCTTCCCTTGAATAAGACAAGCATCGA
* * * * *
1346328 TTCTCCCTAACAATCCCCATTCTTTTCAAGATTGGGAAACCAAAACACATTCCCTTTGTTAGGAT
260 TTCT--CTAACAGTCTCCATT-TTTTCAAGATTGGGAAGCCAAAACACATTGCCTTCGTTAGGAT
* ** * *
1346393 ACACGACATTGATGCTTTTGTGTCGCAAGAAAAGCTTTTCTTCCTGCCATTTTTAATAAAATCAA
322 ACACGACATTGATGC-TTTGGGTCGCAAGAAAAGCTTTTCTTCCCACCATTTTT-GT-AAATCCA
* * * ** * *
1346458 AGTTTGTCTCTTAAACAAGACAAATATGAATAGTCACTCTAATCCCCATTCTTTTTAGGATTAGG
384 AGTTTG-CTCTTAAATAAGACAAACATGAATACTCACAATAATCCCCATTCTTTTCATGATTAGG
* * * * * ***
1346523 CATCGTAAACATAGTCTTCTCAATAGGATACATGATATTGATGCTTTGGTTTCATGACAAA-GCT
448 CACCATAAACACA-TCTTCTCATTAGGATACATGATATT-AAGCTTTGGTTTCGCAACAAAGGCT
* * * ** * * ** *
1346587 TTCTTCTCACCAATTGTGGCAAAGTCTAAGTTCGCGCCTCAAATGACAGAAACGTGGATTCTAGT
511 TTCTTCCCACCAATTGTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAATATGGATTCTACT
*
1346652 AATGATCTTCATTCTTTTTGTGAT
576 AATGATTTTCATTCTTTTTGTGAT
1346676 AAAGAACTAT
Statistics
Matches: 4052, Mismatches: 791, Indels: 434
0.77 0.15 0.08
Matches are distributed among these distances:
631 20 0.00
632 497 0.12
633 572 0.14
634 1831 0.45
635 488 0.12
636 90 0.02
637 10 0.00
638 1 0.00
640 2 0.00
641 1 0.00
642 6 0.00
643 1 0.00
644 3 0.00
646 1 0.00
649 8 0.00
650 415 0.10
651 37 0.01
652 69 0.02
ACGTcount: A:0.29, C:0.20, G:0.15, T:0.36
Consensus pattern (625 bp):
TTAGGATACATGATATTAATGCTTTGGTTTCACAACAAAGGCTTTCTTCCCACCAATTGTTGTAA
AGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTACTAATGATCTTCATTCTTTTTGTG
ATATGGCACTCTAAACACATTCTCCGCTTAGGATAATTGACATTGATGTTTTTCTTTTGCATGAA
AACCTTTTCTTTGCCCAATTATCCTTAAAATCAAAGTTCTTCCCTTGAATAAGACAAGCATCGAT
TCTCTAACAGTCTCCATTTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTCGTTAGGATACAC
GACATTGATGCTTTGGGTCGCAAGAAAAGCTTTTCTTCCCACCATTTTTGTAAATCCAAGTTTGC
TCTTAAATAAGACAAACATGAATACTCACAATAATCCCCATTCTTTTCATGATTAGGCACCATAA
ACACATCTTCTCATTAGGATACATGATATTAAGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCAC
CAATTGTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAATATGGATTCTACTAATGATTTTC
ATTCTTTTTGTGATTTGGCACAATAAACACATTTTCCTCA
Found at i:1348073 original size:476 final size:475
Alignment explanation
Indices: 1346690--1349015 Score: 3085
Period size: 476 Copynumber: 4.9 Consensus size: 475
1346680 AACTATAAAC
* * * *
1346690 ACATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCATATTTTCCTTAATATCAAAGTCT
1 ACATTGATGTTTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTATCCTTAAAATCAAAGT-T
* * * * *
1346755 CCATTCCGTTCAAGATTGAATATGATAAGCATCGATTTTCGTTACAATCTCCATTCCTTTCAAGA
65 -CA-TCC---C----TTGAATAAGACAAGCATCGATTCTCGTAACAGTCTCCA-TCCTTTCAAGA
* * * * * * *
1346820 TTGGGAAGCCAAAACATACTGCCTACGTTAGGATACACGATAATGATGCTTTGGTGTCACAAGAA
120 TTGGGAAGCCAAAACACATTGCCTTCGTTAGGATACACGACATTGATGCTTTGGGGTCTCAAGAA
* * * * *
1346885 AAGCTTTTCTTCCTGCCATTTTTGAAAGAATCAAAGTTTGTCT-TTAAAATAAGACCAACATGAA
185 ATGCTTTTCTTCCCGCCGTTTTTGATAGAATCAAAGTTTGTCTCTT-AAATAAGACAAACATGAA
* * * *
1346949 TACTCACACTAATCCCTATTCTTTTCAAGATTGGGCACTATAAACATAGTCTTCTCATTAGGATA
249 TACTCACACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATA
* * *
1347014 CACGATATTGATGCTTTGGTTTTGCAAAAAAGGCTTTCTTCCCCACCAATTGTTGTAAAGTCTAA
314 CATGATATTGAAGCTTTGGTTTTGCAACAAAGGCTTTCTT-CCCACCAATTGTTGTAAAGTCTAA
* * * * * *
1347079 GTTCATGCTTGAAATGAGACAAACATAGATTCTAGC-AATTATCTTCATTCTTTTTGTGATAAGG
378 GTTCGTGCCTCAAATGAGACAAATATGGATTCTA-CTAATGATCTTCATTCTTTTTGTGATAAGG
* *
1347143 CACTATAAACACATTCTCCTCATTATGGTAAATT-
442 CACTATAAACACATTCTCCGCATTATGAT-AATTG
** * *
1347177 ACATTGGCGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTC
1 ACATTGATGTTTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTATCCTTAAAATCAAAGTTC
* * * * * *
1347242 AACCCTTAAATAAGACAAACATCAATTCTCGTAACCGTCTCCATTCTTTTCAAGATTGGGAAGCC
66 ATCCCTTGAATAAGACAAGCATCGATTCTCGTAACAGTCTCCA-TCCTTTCAAGATTGGGAAGCC
* * * * * * *
1347307 AAAGCACATTTCCTTCATTAGGATACATGACGTTGATGCTTTGGTGT-TGCAAGAGAA-GATTTT
130 AAAACACATTGCCTTCGTTAGGATACACGACATTGATGCTTTGGGGTCT-CAAGA-AATGCTTTT
* * * * *
1347370 CGTCCCACCGTTTTTTGATAGATTCAAAGTTTGTCTCTTAAATAAGACAAACAAT-AAAACTCAT
193 CTTCCCGCCG-TTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAAC-ATGAATACTCAC
* * *
1347434 ACTAATCCCCATTCTTTTCAGGATTAGGCCCCATAAACATAGTCTTCTCATTAGGATTCATAATA
256 ACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGATA
** * *
1347499 TTGAAGCTTTGGTTTCACAACAAAGGTTTTCTTCCCACCAATTGTTGCAAAGTCTAAGTTCGTGC
321 TTGAAGCTTTGGTTTTGCAACAAAGGCTTTCTTCCCACCAATTGTTGTAAAGTCTAAGTTCGTGC
**
1347564 CTCAAATGAGACAAATATGGATTCTGGTAATGATCTTCATTCTTTTTGTGATAAGGCACTATAAA
386 CTCAAATGAGACAAATATGGATTCTACTAATGATCTTCATTCTTTTTGTGATAAGGCACTATAAA
*
1347629 CACATTCTCCACATTATGATAATTG
451 CACATTCTCCGCATTATGATAATTG
* * * *
1347654 ACATTGATGTTTTTCTTTT-CAATGGAAATCATTTCTTTGCCCAACTATCCTTAAAATGAAAGTT
1 ACATTGATGTTTTTCTTTTGC-ATGGAAATCTTTTCTTTGCCCTATTATCCTTAAAATCAAAGTT
* * *
1347718 CATCCCTTGAATAAGACAAGCATCGAGTCTCGTAATAGTCTCCACTGCTTTCAAGATTGGGAAGC
65 CATCCCTTGAATAAGACAAGCATCGATTCTCGTAACAGTCTCCA-TCCTTTCAAGATTGGGAAGC
*
1347783 CAAAACACATTGCCTTCGTTAGGATACACAACATTGATGCTTTGGGGTCTCAAGAAATGCTTTTC
129 CAAAACACATTGCCTTCGTTAGGATACACGACATTGATGCTTTGGGGTCTCAAGAAATGCTTTTC
* * *
1347848 TTCCCGCCGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGAAAAACATGAATACTCACGCT
194 TTCCCGCCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCACACT
* * *
1347913 AATCCCCATTCTTTTTAGGATTAGGTACCGTAAACATAGTCTTCTCATTAGGATACATGATATTG
259 AATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGATATTG
* * *
1347978 AAGCTTTGGTTTTGCAACAAAGGCATTCTTCCTACCAATTGTTGTAAAGTCTAAGTTTGTGCCTC
324 AAGCTTTGGTTTTGCAACAAAGGCTTTCTTCCCACCAATTGTTGTAAAGTCTAAGTTCGTGCCTC
*
1348043 AAATGAGACAAATATGGATTCTACTAATGATCTTCATTCTTTTTCTGATAAGGCACTATAAACAC
389 AAATGAGACAAATATGGATTCTACTAATGATCTTCATTCTTTTTGTGATAAGGCACTATAAACAC
1348108 ATTCTCCGCATT-TGGATAATTG
454 ATTCTCCGCATTAT-GATAATTG
* * *
1348130 ACATTGATGTTTTTCTTTTGCATGG-AATCTTTTCTTTGCCCTATTATTCTTAAAATGAAAGTTT
1 ACATTGATGTTTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTATCCTTAAAATCAAAGTTC
* ** *
1348194 ATCCCTTGAATAAAACAAGCATCGATTCTTATAATAGTCTCCACTCCTTTCAAGATTGGGAAGCC
66 ATCCCTTGAATAAGACAAGCATCGATTCTCGTAACAGTCTCCA-TCCTTTCAAGATTGGGAAGCC
*
1348259 AAAACACATTGCCTTCGTTAGGATACACGACATTGAAGCTTTGGGGTCTCAAGAAATGCTTTTCT
130 AAAACACATTGCCTTCGTTAGGATACACGACATTGATGCTTTGGGGTCTCAAGAAATGCTTTTCT
* * *
1348324 TCCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAAAAACATGAATACTCACGCTA
195 TCCCGCCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCACACTA
*
1348389 ATCCCCATTCTTTTTC-GGATTA-GCTACCATAAACATAGTCTTCGCATTAGGATACATGATATT
260 ATCCCCATTC-TTTTCAGGATTAGGC-ACCATAAACATAGTCTTCTCATTAGGATACATGATATT
* * *
1348452 GAAGCTTTGGTTTTGCAACAAAGGCATTCTTCCCACTAATTATTGTAAAGTCTAAGTTCGTGCCT
323 GAAGCTTTGGTTTTGCAACAAAGGCTTTCTTCCCACCAATTGTTGTAAAGTCTAAGTTCGTGCCT
*
1348517 CAAATGAGACAAATATGGATTCTACTAATGATCTTCATTCTTTTTTTGATAAGGCACTATAAACA
388 CAAATGAGACAAATATGGATTCTACTAATGATCTTCATTCTTTTTGTGATAAGGCACTATAAACA
* *
1348582 CATTCTCCGCATTAGGATAAATG
453 CATTCTCCGCATTATGATAATTG
* * * ** * *
1348605 ATATTGACT-CTTTTCTTTTGCATGGAAATCTTTCCTTCACCCTATTTTCCATAAAATCAAAGTT
1 ACATTGA-TGTTTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTATCCTTAAAATCAAAGTT
*** * * *
1348669 CATCCCACAAATAAGACAAGCATCAATTCTCGTAACAGTCTCTATGCTTTTCAAGATTGGGAAGC
65 CATCCCTTGAATAAGACAAGCATCGATTCTCGTAACAGTCTCCAT-CCTTTCAAGATTGGGAAGC
* * **
1348734 CAAAACACATTGCCTTCATTAGGATACACAACATTGATGCTTTGGGGTCTCAAGAAATAATTTTC
129 CAAAACACATTGCCTTCGTTAGGATACACGACATTGATGCTTTGGGGTCTCAAGAAATGCTTTTC
* * * *
1348799 TTCCTGTCGTTTTTGATAGAAAC-AAGATTTGTCTCTTAAATAAGACAAACAAGAATACTCACAC
194 TTCCCGCCGTTTTTGATAGAATCAAAG-TTTGTCTCTTAAATAAGACAAACATGAATACTCACAC
* *
1348863 TAATCCCCAATCTTTTCAGGGTTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGATATT
258 TAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGATATT
* * * *
1348928 GAAGCTTTGGTTTCGCAACAAAGGCTTTCTTCCGACCAATTTTTGTAAAGTCTAAGTTCATGCCT
323 GAAGCTTTGGTTTTGCAACAAAGGCTTTCTTCCCACCAATTGTTGTAAAGTCTAAGTTCGTGCCT
* * * *
1348993 CTAATGCGACAAACATCGATTCT
388 CAAATGAGACAAATATGGATTCT
1349016 CGTAATAGTC
Statistics
Matches: 1636, Mismatches: 181, Indels: 55
0.87 0.10 0.03
Matches are distributed among these distances:
474 1 0.00
475 450 0.28
476 607 0.37
477 379 0.23
478 130 0.08
479 4 0.00
481 1 0.00
484 2 0.00
485 2 0.00
486 1 0.00
487 59 0.04
ACGTcount: A:0.31, C:0.20, G:0.15, T:0.35
Consensus pattern (475 bp):
ACATTGATGTTTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTATCCTTAAAATCAAAGTTC
ATCCCTTGAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATCCTTTCAAGATTGGGAAGCCA
AAACACATTGCCTTCGTTAGGATACACGACATTGATGCTTTGGGGTCTCAAGAAATGCTTTTCTT
CCCGCCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCACACTAA
TCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGATATTGAA
GCTTTGGTTTTGCAACAAAGGCTTTCTTCCCACCAATTGTTGTAAAGTCTAAGTTCGTGCCTCAA
ATGAGACAAATATGGATTCTACTAATGATCTTCATTCTTTTTGTGATAAGGCACTATAAACACAT
TCTCCGCATTATGATAATTG
Found at i:1348125 original size:158 final size:158
Alignment explanation
Indices: 1347004--1348611 Score: 441
Period size: 159 Copynumber: 10.1 Consensus size: 158
1346994 ATAGTCTTCT
* * * * *
1347004 CATTAGGATACACGATATTGATGCTTTGGTTTTGCAAAAAAGGCTTTCTTCCCCACCAATTGTTG
1 CATTAGGATACATGATATTGAAGCTTTGGTTTTGCAACAAAGGCATTCTT-CCCACCAATTATTG
* ** * * * * * *
1347069 TAAAGTCTAAGTTCATGCTTGAAATGAGACAAACATAGATTCTAGC-AATTATCTTCATTCTTTT
65 TAAAGTCAAAGTTTGTGCCTCAAATAAGACAAACATGGATTCTA-CTAATGATCTCCATTCTTTT
* * *
1347133 TGTGATAAGGCACTATAAACACATTCTCCT
129 TCTGATAAGGCACCATAAACACATTCTCCG
* * * ** * ** ** * * ** *
1347163 CATTATGG-TAAATTACATTGGCGATTTTCTTTTGCATGGAAA-TCTTTTCTTTGC-CCTATT-T
1 CATTA-GGATACATGATATTGAAGCTTTGGTTTTGCA-ACAAAGGC-ATTCTTCCCACCAATTAT
* * **** * ** *
1347224 TCCTTAAAATCAAAGTTCAACCCTTAAATAAGACAAACATCAATTCT-CGTAACCG-TCTCCATT
63 T--GTAAAGTCAAAGTTTGTGCCTCAAATAAGACAAACATGGATTCTAC-TAA-TGATCTCCATT
* ** * * *
1347287 C-TTTTCAAGATTGGGAAGCCA-AAGCACATT-TCCTT
124 CTTTTTC-TGATAAGGCA-CCATAAACACATTCTCC-G
** * * * *** * ** *
1347322 CATTAGGATACATGACGTTGATGCTTTGGTGTTGCAAGAGAAGATTTTCGTCCCACCGTTTTTTG
1 CATTAGGATACATGATATTGAAGCTTTGGTTTTGCAACA-AAGGCATTCTTCCCACCAATTATTG
* * * ** * *
1347387 ATAGATTCAAAGTTTGT-CTCTTAAATAAGACAAACAATAAAACTCATACT-A--ATCCCCATTC
65 -TAAAGTCAAAGTTTGTGC-CTCAAATAAGACAAAC-AT-GGATTC-TACTAATGATCTCCATTC
* * * * * * *
1347448 -TTTTCAGGATTAGGCCCCATAAACATAGTCTTCT
125 TTTTTC-TGATAAGGCACCATAAACACATTCTCCG
* * ** ** * *
1347482 CATTAGGATTCATAATATTGAAGCTTTGGTTTCACAACAAAGGTTTTCTTCCCACCAATTGTTGC
1 CATTAGGATACATGATATTGAAGCTTTGGTTTTGCAACAAAGGCATTCTTCCCACCAATTATTGT
* * * * ** * *
1347547 AAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTGGTAATGATCTTCATTCTTTTTG
66 AAAGTCAAAGTTTGTGCCTCAAATAAGACAAACATGGATTCTACTAATGATCTCCATTCTTTTTC
* *
1347612 TGATAAGGCACTATAAACACATTCTCCA
131 TGATAAGGCACCATAAACACATTCTCCG
* * * * ** * * ** *
1347640 CATTATGATA-ATTGACATTGATGTTTTTCTTTT-CAATGGAAA-TCATTTCTTTGC-CCAACTA
1 CATTAGGATACA-TGATATTGAAGCTTTGGTTTTGCAA--CAAAGGCA-TTCTTCCCACCAATTA
* * ** * ** * * *
1347701 TCCT-TAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGAGTCT-CGTAAT-AGTCTCCA-
62 T--TGTAAAGTCAAAGTTTGTGCCTCAAATAAGACAAACATGGATTCTAC-TAATGA-TCTCCAT
* * ** * *
1347762 -CTGCTTTCAAGATTGGGAAGCCA-AAACACATTGCCTTCG
123 TCT-TTTTC-TGATAAGGCA-CCATAAACACATT--CTCCG
** * * * * * * * * * *
1347801 --TTAGGATACACAACATTGATGCTTTGGGGTCT-CAAGAAATGCTTTTCTTCCCGCC-GTTTTT
1 CATTAGGATACATGATATTGAAGCTTT-GGTTTTGCAACAAAGGC-ATTCTTCCCACCAATTATT
* * * ** * *
1347862 GATAGAA-TCAAAG-TT-TGCCTCTTAAATAAGAAAAACATGAATACTCAC-GCTAATCCCCATT
64 G-TA-AAGTCAAAGTTTGTGCCTC--AAATAAGACAAACATGGATTCT-ACTAATGATCTCCATT
** * * * * * * *
1347923 CTTTTTAGGATTAGGTACCGTAAACATAGTCTTCT
124 CTTTTTCTGATAAGGCACCATAAACACATTCTCCG
* *
1347958 CATTAGGATACATGATATTGAAGCTTTGGTTTTGCAACAAAGGCATTCTTCCTACCAATTGTTGT
1 CATTAGGATACATGATATTGAAGCTTTGGTTTTGCAACAAAGGCATTCTTCCCACCAATTATTGT
* * * *
1348023 AAAGTCTAAGTTTGTGCCTCAAATGAGACAAATATGGATTCTACTAATGATCTTCATTCTTTTTC
66 AAAGTCAAAGTTTGTGCCTCAAATAAGACAAACATGGATTCTACTAATGATCTCCATTCTTTTTC
*
1348088 TGATAAGGCACTATAAACACATTCTCCG
131 TGATAAGGCACCATAAACACATTCTCCG
* * * * ** *** * * ** *
1348116 CATTTGGATA-ATTGACATTGATGTTTTTCTTTTGCATGGAA-TCTTTTCTTTGC-CCTATTATT
1 CATTAGGATACA-TGATATTGAAGCTTTGGTTTTGCAACAAAGGC-ATTCTTCCCACCAATTATT
* * * * * ** * * * *
1348178 CTTAAAATGAAAGTTTATCCCTTGAATAAAACAAGCATCGATTCTTA-TAAT-AGTCTCCACTC-
64 -GTAAAGTCAAAGTTTGTGCCTCAAATAAGACAAACATGGATTC-TACTAATGA-TCTCCATTCT
* * ** * *
1348240 CTTTCAAGATTGGGAAGCCA-AAACACATTGCCTTCG
126 TTTTC-TGATAAGGCA-CCATAAACACATT--CTCCG
* * * * * * * * *
1348276 --TTAGGATACACGACATTGAAGCTTTGGGGTCT-CAAGAAATGCTTTTCTTCCCACC-GTTTTT
1 CATTAGGATACATGATATTGAAGCTTT-GGTTTTGCAACAAAGGC-ATTCTTCCCACCAATTATT
* * * * ** * *
1348337 GATAGAA-TCAAAGTTTGT-CTCTTAAATAAGAAAAACATGAATACTCAC-GCTAATCCCCATTC
64 G-TA-AAGTCAAAGTTTGTGC-CTCAAATAAGACAAACATGGATTCT-ACTAATGATCTCCATTC
* * * * *
1348399 TTTTTCGGATTA-GCTACCATAAACATAGTCTTCG
125 TTTTTCTGATAAGGC-ACCATAAACACATTCTCCG
*
1348433 CATTAGGATACATGATATTGAAGCTTTGGTTTTGCAACAAAGGCATTCTTCCCACTAATTATTGT
1 CATTAGGATACATGATATTGAAGCTTTGGTTTTGCAACAAAGGCATTCTTCCCACCAATTATTGT
* * * * * *
1348498 AAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTACTAATGATCTTCATTCTTTTTT
66 AAAGTCAAAGTTTGTGCCTCAAATAAGACAAACATGGATTCTACTAATGATCTCCATTCTTTTTC
*
1348563 TGATAAGGCACTATAAACACATTCTCCG
131 TGATAAGGCACCATAAACACATTCTCCG
*
1348591 CATTAGGATAAATGATATTGA
1 CATTAGGATACATGATATTGA
1348612 CTCTTTTCTT
Statistics
Matches: 1028, Mismatches: 324, Indels: 195
0.66 0.21 0.13
Matches are distributed among these distances:
155 2 0.00
156 4 0.00
157 47 0.05
158 395 0.38
159 423 0.41
160 137 0.13
161 12 0.01
162 5 0.00
163 2 0.00
164 1 0.00
ACGTcount: A:0.30, C:0.20, G:0.15, T:0.35
Consensus pattern (158 bp):
CATTAGGATACATGATATTGAAGCTTTGGTTTTGCAACAAAGGCATTCTTCCCACCAATTATTGT
AAAGTCAAAGTTTGTGCCTCAAATAAGACAAACATGGATTCTACTAATGATCTCCATTCTTTTTC
TGATAAGGCACCATAAACACATTCTCCG
Found at i:1348621 original size:951 final size:952
Alignment explanation
Indices: 1346770--1349015 Score: 3138
Period size: 951 Copynumber: 2.4 Consensus size: 952
1346760 CCGTTCAAGA
* * * * * *
1346770 TTGAATATGATAAGCATCGATTTTCGTTACAATCTCCATTCCTTTCAAGATTGGGAAGCCAAAAC
1 TTGAATAAGACAAGCATCGATTCTCGTAACAGTCTCCA-TGCTTTCAAGATTGGGAAGCCAAAAC
* * * * * * * * *
1346835 ATACTGCCTACGTTAGGATACACGATAATGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTCCTG
65 ACATTGCCTTCGTTAGGATACACAACATTGATGCTTTGGGGTCTCAAGAAATGCTTTTCTTCCTG
* * *
1346900 CCATTTTTGAAAGAATCAAAGTTTGTCT-TTAAAATAAGACCAACATGAATACTCACACTAATCC
130 CCGTTTTTGATAGAATCAAAGTTTGTCTCTT-AAATAAGACAAACATGAATACTCACACTAATCC
* * * * * *
1346964 CTATTCTTTTCAAGATTGGGCACTATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCT
194 CCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGATATTGAAGCT
* * *
1347029 TTGGTTTTGCAAAAAAGGCTTTCTTCCCCACCAATTGTTGTAAAGTCTAAGTTCATGCTTGAAAT
259 TTGGTTTTGCAACAAAGGCTTTCTT-CCCACCAATTGTTGTAAAGTCTAAGTTCATGCCTCAAAT
* *
1347094 GAGACAAACATAGATTCTAGCAATTATCTTCATTCTTTTTGTGATAAGGCACTATAAACACATTC
323 GAGACAAACATAGATTCTAGCAATGATCTTCATTCTTTTTCTGATAAGGCACTATAAACACATTC
* *
1347159 TCCTCATTATGGTAAATTACATTGGCGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTT
388 TCCGCATTATGGTAAATTACATTGACGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTT
* * * * *
1347224 TCCTTAAAATCAAAGTTCAACCCTTAAATAAGACAAACATCAATTCTCGTAACCGTCTCCATTCT
453 TCCTTAAAATCAAAGTTCAACCCTTAAATAAAACAAACATCAATTCTCATAACAGTCTCCACTCC
* * * * * *
1347289 TTTCAAGATTGGGAAGCCAAAGCACATTTCCTTCATTAGGATACATGACGTTGATGCTTTGGTGT
518 TTTCAAGATTGGGAAGCCAAAACACATTGCCTTCATTAGGATACACGACATTGAAGCTTTGGGGT
* *
1347354 TGCAAGAGAAGATTTTCGTCCCACCGTTTTTTGATAGATTCAAAGTTTGTCTCTTAAATAAGACA
583 TGCAAGAGAAGATTTTCGTCCCACCGTTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAAA
* * *
1347419 AACAATAAAACTCATACTAATCCCCATTCTTTTCAGGATTAGGCCCCATAAACATAGTCTTCTCA
648 AACAATAAAACTCACACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCGCA
* ** *
1347484 TTAGGATTCATAATATTGAAGCTTTGGTTTCACAACAAAGGTTTTCTTCCCACCAATTGTTGCAA
713 TTAGGATACATAATATTGAAGCTTTGGTTTCACAACAAAGGCATTCTTCCCACCAATTATTGCAA
**
1347549 AGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTGGTAATGATCTTCATTCTTTTTGTG
778 AGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTACTAATGATCTTCATTCTTTTTGTG
* * *
1347614 ATAAGGCACTATAAACACATTCTCCACATTATGATAATTGACATTGATGTTTTTCTTTT-CAATG
843 ATAAGGCACTATAAACACATTCTCCACATTAGGATAAATGACATTGATGCTTTTCTTTTGC-ATG
** * *
1347678 GAAATCATTT-CTTTGCCCAACTATCCTTAAAATGAAAGTTCATCCC
907 GAAATC-TTTCCTTCACCCAACTATCCATAAAATCAAAGTTCATCCC
* *
1347724 TTGAATAAGACAAGCATCGAGTCTCGTAATAGTCTCCACTGCTTTCAAGATTGGGAAGCCAAAAC
1 TTGAATAAGACAAGCATCGATTCTCGTAACAGTCTCCA-TGCTTTCAAGATTGGGAAGCCAAAAC
*
1347789 ACATTGCCTTCGTTAGGATACACAACATTGATGCTTTGGGGTCTCAAGAAATGCTTTTCTTCCCG
65 ACATTGCCTTCGTTAGGATACACAACATTGATGCTTTGGGGTCTCAAGAAATGCTTTTCTTCCTG
* * *
1347854 CCGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGAAAAACATGAATACTCACGCTAATCCC
130 CCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCACACTAATCCC
* * *
1347919 CATTCTTTTTAGGATTAGGTACCGTAAACATAGTCTTCTCATTAGGATACATGATATTGAAGCTT
195 CATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGATATTGAAGCTT
* * **
1347984 TGGTTTTGCAACAAAGGCATTCTTCCTACCAATTGTTGTAAAGTCTAAGTTTGTGCCTCAAATGA
260 TGGTTTTGCAACAAAGGCTTTCTTCCCACCAATTGTTGTAAAGTCTAAGTTCATGCCTCAAATGA
* *
1348049 GACAAATATGGATTCTA-CTAATGATCTTCATTCTTTTTCTGATAAGGCACTATAAACACATTCT
325 GACAAACATAGATTCTAGC-AATGATCTTCATTCTTTTTCTGATAAGGCACTATAAACACATTCT
* *
1348113 CCGCATT-TGG-ATAATTGACATTGATGTTTTTCTTTTGCATGG-AATCTTTTCTTTGCCCTATT
389 CCGCATTATGGTA-AATT-ACATTGACGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATT
* * * * * * * *
1348175 ATT-CTTAAAATGAAAGTTTATCCCTTGAATAAAACAAGCATCGATTCTTATAATAGTCTCCACT
452 -TTCCTTAAAATCAAAGTTCAACCCTTAAATAAAACAAACATCAATTCTCATAACAGTCTCCACT
*
1348239 CCTTTCAAGATTGGGAAGCCAAAACACATTGCCTTCGTTAGGATACACGACATTGAAGCTTTGGG
516 CCTTTCAAGATTGGGAAGCCAAAACACATTGCCTTCATTAGGATACACGACATTGAAGCTTTGGG
* *
1348304 GTCT-CAAGA-AATGCTTTTCTTCCCACCG-TTTTTGATAGAATCAAAGTTTGTCTCTTAAATAA
581 GT-TGCAAGAGAA-GATTTTCGTCCCACCGTTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAA
* *
1348366 GAAAAAC-ATGAATACTCACGCTAATCCCCATTCTTTTTC-GGATTA-GCTACCATAAACATAGT
644 GAAAAACAAT-AAAACTCACACTAATCCCCATTC-TTTTCAGGATTAGGC-ACCATAAACATAGT
* ** *
1348428 CTTCGCATTAGGATACATGATATTGAAGCTTTGGTTTTGCAACAAAGGCATTCTTCCCACTAATT
706 CTTCGCATTAGGATACATAATATTGAAGCTTTGGTTTCACAACAAAGGCATTCTTCCCACCAATT
*
1348493 ATTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTACTAATGATCTTCATTCT
771 ATTGCAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTACTAATGATCTTCATTCT
* * *
1348558 TTTTTTGATAAGGCACTATAAACACATTCTCCGCATTAGGATAAATGATATTGACT-CTTTTCTT
836 TTTTGTGATAAGGCACTATAAACACATTCTCCACATTAGGATAAATGACATTGA-TGCTTTTCTT
* * *
1348622 TTGCATGGAAATCTTTCCTTCACCCTATTTTCCATAAAATCAAAGTTCATCCC
900 TTGCATGGAAATCTTTCCTTCACCCAACTATCCATAAAATCAAAGTTCATCCC
*** * *
1348675 ACAAATAAGACAAGCATCAATTCTCGTAACAGTCTCTATGCTTTTCAAGATTGGGAAGCCAAAAC
1 TTGAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATGC-TTTCAAGATTGGGAAGCCAAAAC
* **
1348740 ACATTGCCTTCATTAGGATACACAACATTGATGCTTTGGGGTCTCAAGAAATAATTTTCTTCCTG
65 ACATTGCCTTCGTTAGGATACACAACATTGATGCTTTGGGGTCTCAAGAAATGCTTTTCTTCCTG
* * *
1348805 TCGTTTTTGATAGAAAC-AAGATTTGTCTCTTAAATAAGACAAACAAGAATACTCACACTAATCC
130 CCGTTTTTGATAGAATCAAAG-TTTGTCTCTTAAATAAGACAAACATGAATACTCACACTAATCC
* *
1348869 CCAATCTTTTCAGGGTTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGATATTGAAGCT
194 CCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGATATTGAAGCT
* * * *
1348934 TTGGTTTCGCAACAAAGGCTTTCTTCCGACCAATTTTTGTAAAGTCTAAGTTCATGCCTCTAATG
259 TTGGTTTTGCAACAAAGGCTTTCTTCCCACCAATTGTTGTAAAGTCTAAGTTCATGCCTCAAATG
* *
1348999 CGACAAACATCGATTCT
324 AGACAAACATAGATTCT
1349016 CGTAATAGTC
Statistics
Matches: 1143, Mismatches: 134, Indels: 33
0.87 0.10 0.03
Matches are distributed among these distances:
950 13 0.01
951 596 0.52
952 162 0.14
953 125 0.11
954 245 0.21
955 2 0.00
ACGTcount: A:0.31, C:0.20, G:0.15, T:0.34
Consensus pattern (952 bp):
TTGAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATGCTTTCAAGATTGGGAAGCCAAAACA
CATTGCCTTCGTTAGGATACACAACATTGATGCTTTGGGGTCTCAAGAAATGCTTTTCTTCCTGC
CGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCACACTAATCCCC
ATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGATATTGAAGCTTT
GGTTTTGCAACAAAGGCTTTCTTCCCACCAATTGTTGTAAAGTCTAAGTTCATGCCTCAAATGAG
ACAAACATAGATTCTAGCAATGATCTTCATTCTTTTTCTGATAAGGCACTATAAACACATTCTCC
GCATTATGGTAAATTACATTGACGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCC
TTAAAATCAAAGTTCAACCCTTAAATAAAACAAACATCAATTCTCATAACAGTCTCCACTCCTTT
CAAGATTGGGAAGCCAAAACACATTGCCTTCATTAGGATACACGACATTGAAGCTTTGGGGTTGC
AAGAGAAGATTTTCGTCCCACCGTTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAAAAAC
AATAAAACTCACACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCGCATTA
GGATACATAATATTGAAGCTTTGGTTTCACAACAAAGGCATTCTTCCCACCAATTATTGCAAAGT
CTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTACTAATGATCTTCATTCTTTTTGTGATA
AGGCACTATAAACACATTCTCCACATTAGGATAAATGACATTGATGCTTTTCTTTTGCATGGAAA
TCTTTCCTTCACCCAACTATCCATAAAATCAAAGTTCATCCC
Found at i:1350711 original size:12 final size:11
Alignment explanation
Indices: 1350692--1350767 Score: 70
Period size: 12 Copynumber: 6.9 Consensus size: 11
1350682 AGAGAAAGAA
1350692 GAGATAGGAGG
1 GAGATAGGAGG
*
1350703 GATGATAGGAAGA
1 GA-GATAGG-AGG
1350716 GAGATAGGA-G
1 GAGATAGGAGG
*
1350726 G-GATAGTA--
1 GAGATAGGAGG
1350734 GAGATAGGAGG
1 GAGATAGGAGG
1350745 GATGATAGGAGG
1 GA-GATAGGAGG
1350757 AGAGATAGGAG
1 -GAGATAGGAG
1350768 AGATAATAGA
Statistics
Matches: 54, Mismatches: 4, Indels: 13
0.76 0.06 0.18
Matches are distributed among these distances:
8 1 0.02
9 12 0.22
10 1 0.02
11 5 0.09
12 29 0.54
13 6 0.11
ACGTcount: A:0.39, C:0.00, G:0.47, T:0.13
Consensus pattern (11 bp):
GAGATAGGAGG
Found at i:1350721 original size:24 final size:23
Alignment explanation
Indices: 1350691--1350782 Score: 97
Period size: 24 Copynumber: 4.2 Consensus size: 23
1350681 AAGAGAAAGA
1350691 AGAGATAGGAGGGATGATAGGAAG
1 AGAGATAGGAGGGATGATAGG-AG
*
1350715 AGAGATAGGA-GG--GATA-G-T
1 AGAGATAGGAGGGATGATAGGAG
1350733 AGAGATAGGAGGGATGATAGGAGG
1 AGAGATAGGAGGGATGATAGGA-G
* *
1350757 AGAGATAGGAGAGATAATA-GAG
1 AGAGATAGGAGGGATGATAGGAG
1350779 AGAG
1 AGAG
1350783 CAGGGATGAT
Statistics
Matches: 58, Mismatches: 4, Indels: 14
0.76 0.05 0.18
Matches are distributed among these distances:
18 10 0.17
19 2 0.03
20 1 0.02
21 8 0.14
22 6 0.10
23 4 0.07
24 27 0.47
ACGTcount: A:0.42, C:0.00, G:0.45, T:0.13
Consensus pattern (23 bp):
AGAGATAGGAGGGATGATAGGAG
Found at i:1350739 original size:9 final size:9
Alignment explanation
Indices: 1350714--1350772 Score: 52
Period size: 9 Copynumber: 6.9 Consensus size: 9
1350704 ATGATAGGAA
1350714 GAGAGATAG
1 GAGAGATAG
*
1350723 GAGGGATAG
1 GAGAGATAG
*
1350732 TAGAGATAG
1 GAGAGATAG
*
1350741 GAGGGAT--
1 GAGAGATAG
* *
1350748 GATAG-GAG
1 GAGAGATAG
1350756 GAGAGATAG
1 GAGAGATAG
1350765 GAGAGATA
1 GAGAGATA
1350773 ATAGAGAGAG
Statistics
Matches: 37, Mismatches: 10, Indels: 6
0.70 0.19 0.11
Matches are distributed among these distances:
7 3 0.08
8 4 0.11
9 30 0.81
ACGTcount: A:0.41, C:0.00, G:0.46, T:0.14
Consensus pattern (9 bp):
GAGAGATAG
Found at i:1350776 original size:12 final size:12
Alignment explanation
Indices: 1350694--1350781 Score: 59
Period size: 12 Copynumber: 7.9 Consensus size: 12
1350684 AGAAAGAAGA
*
1350694 GATAGGAGGGAT
1 GATAGGAGAGAT
1350706 GATAGGAAGAGA-
1 GATAGG-AGAGAT
1350718 GATAGGAG-G--
1 GATAGGAGAGAT
*
1350727 GATA-G-TAGA-
1 GATAGGAGAGAT
*
1350736 GATAGGAGGGAT
1 GATAGGAGAGAT
1350748 GATAGGAGGAGA-
1 GATAGGA-GAGAT
1350760 GATAGGAGAGAT
1 GATAGGAGAGAT
*
1350772 AATA-GAGAGA
1 GATAGGAGAGA
1350782 GCAGGGATGA
Statistics
Matches: 62, Mismatches: 6, Indels: 17
0.73 0.07 0.20
Matches are distributed among these distances:
8 2 0.03
9 8 0.13
10 2 0.03
11 14 0.23
12 29 0.47
13 7 0.11
ACGTcount: A:0.42, C:0.00, G:0.44, T:0.14
Consensus pattern (12 bp):
GATAGGAGAGAT
Found at i:1350797 original size:42 final size:42
Alignment explanation
Indices: 1350691--1350804 Score: 174
Period size: 42 Copynumber: 2.7 Consensus size: 42
1350681 AAGAGAAAGA
* * *
1350691 AGAGATAGGAGGGATGATAGGAAGAGAGATAGGAGGGATAGT
1 AGAGATAGGAGGGATGATAGGAGGAGAGATAGGAGAGATAAT
1350733 AGAGATAGGAGGGATGATAGGAGGAGAGATAGGAGAGATAAT
1 AGAGATAGGAGGGATGATAGGAGGAGAGATAGGAGAGATAAT
* *
1350775 AGAGAGAGCAGGGATGATAGGAGGAAGAGA
1 AGAGATAGGAGGGATGATAGGAGG-AGAGA
1350805 GAAGAAGATG
Statistics
Matches: 66, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
42 61 0.92
43 5 0.08
ACGTcount: A:0.42, C:0.01, G:0.45, T:0.12
Consensus pattern (42 bp):
AGAGATAGGAGGGATGATAGGAGGAGAGATAGGAGAGATAAT
Found at i:1354067 original size:14 final size:14
Alignment explanation
Indices: 1354048--1354074 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
1354038 GTTTTTTTTC
1354048 AAGAATACAAAAAA
1 AAGAATACAAAAAA
1354062 AAGAATACAAAAA
1 AAGAATACAAAAA
1354075 GAGAGGAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.78, C:0.07, G:0.07, T:0.07
Consensus pattern (14 bp):
AAGAATACAAAAAA
Found at i:1354864 original size:24 final size:23
Alignment explanation
Indices: 1354833--1354924 Score: 79
Period size: 24 Copynumber: 4.2 Consensus size: 23
1354823 AAGAGAAAGA
1354833 AGAGATAGGAGGGATGATAAGAGG
1 AGAGATAGGAGGGATGAT-AGAGG
* *
1354857 AGAGATAGGA--TA-GAT--AGT
1 AGAGATAGGAGGGATGATAGAGG
1354875 AGAGATAGGAGGGATGATAGGAGG
1 AGAGATAGGAGGGATGATA-GAGG
* * *
1354899 AGAGATATGAGTGATAATAGA-G
1 AGAGATAGGAGGGATGATAGAGG
1354921 AGAG
1 AGAG
1354925 GAGGGATGAC
Statistics
Matches: 55, Mismatches: 7, Indels: 14
0.72 0.09 0.18
Matches are distributed among these distances:
18 12 0.22
20 1 0.02
21 6 0.11
22 6 0.11
23 2 0.04
24 28 0.51
ACGTcount: A:0.42, C:0.00, G:0.41, T:0.16
Consensus pattern (23 bp):
AGAGATAGGAGGGATGATAGAGG
Found at i:1354892 original size:42 final size:42
Alignment explanation
Indices: 1354833--1354933 Score: 150
Period size: 42 Copynumber: 2.4 Consensus size: 42
1354823 AAGAGAAAGA
*
1354833 AGAGATAGGAGGGATGATAAGAGGAGAGATAGGA-TAGATAGT
1 AGAGATAGGAGGGATGATAAGAGGAGAGATAGGAGT-GATAAT
* *
1354875 AGAGATAGGAGGGATGATAGGAGGAGAGATATGAGTGATAAT
1 AGAGATAGGAGGGATGATAAGAGGAGAGATAGGAGTGATAAT
*
1354917 AGAGAGAGGAGGGATGA
1 AGAGATAGGAGGGATGA
1354934 CAGGAAGAGG
Statistics
Matches: 54, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
42 53 0.98
43 1 0.02
ACGTcount: A:0.42, C:0.00, G:0.43, T:0.16
Consensus pattern (42 bp):
AGAGATAGGAGGGATGATAAGAGGAGAGATAGGAGTGATAAT
Found at i:1354905 original size:12 final size:12
Alignment explanation
Indices: 1354833--1354905 Score: 51
Period size: 12 Copynumber: 5.6 Consensus size: 12
1354823 AAGAGAAAGA
1354833 AGAGATAGGAGG
1 AGAGATAGGAGG
*
1354845 -GATGATAAGAGG
1 AGA-GATAGGAGG
1354857 AGAGATAGGATAGATAG
1 AGAGATAGG--AG---G
1354874 TAGAGATAGGAGG
1 -AGAGATAGGAGG
1354887 -GATGATAGGAGG
1 AGA-GATAGGAGG
1354899 AGAGATA
1 AGAGATA
1354906 TGAGTGATAA
Statistics
Matches: 49, Mismatches: 2, Indels: 20
0.69 0.03 0.28
Matches are distributed among these distances:
11 4 0.08
12 26 0.53
13 5 0.10
14 2 0.04
16 2 0.04
17 1 0.02
18 9 0.18
ACGTcount: A:0.42, C:0.00, G:0.42, T:0.15
Consensus pattern (12 bp):
AGAGATAGGAGG
Found at i:1361681 original size:159 final size:157
Alignment explanation
Indices: 1361373--1366522 Score: 1629
Period size: 159 Copynumber: 32.4 Consensus size: 157
1361363 GATAGGCTCT
* * * * * ** * *
1361373 ATAAACACATTCTCC-GCATTAGGATAAATGATACTGATGATTTTCTTTTGCATGAAAATCTTTT
1 ATAAACACATTC-CCTTCATTAGGATACATGACATTGATGCTTTGGTTTTGCAAGAAAAGCTTTT
* * * * * * *
1361437 CTTTGCCCTATTTTCT-ATAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCG-ATTTTCAT
65 C-TTCCCCCATTTT-TGATAGAATCAAAGTTCGT-CCTTAAATAAGACAAACAT-GAATTCTCAC
* * *** * * *
1361500 AATAGTCTTTATGCCTTTCAAGATTGGGAAGCC
126 ACTAATCCCCATTCTTTTCAAGATTAGGAA-CC
* *
1361533 A-AAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTC
1 ATAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTC
* * * * *
1361597 ATCCCCTCGTTTTTGATAGAATTAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCACACT
66 TTCCCC-CATTTTTGATAGAATCAAAGTTCGTC-CTTAAATAAGACAAACATGAATTCTCACACT
* * *
1361662 AATCCCTATTCTTTTCAAGATTGGGCACC
129 AATCCCCATTCTTTTCAAGATTAGGAACC
* * * * * * * *
1361691 AT-AA-ACATTGTCTTCTCGTTAGGATACACGATATTGATGCTTTAGTTTTGCAACAAAGGC-TT
1 ATAAACACATT-CCCT-TCATTAGGATACATGACATTGATGCTTTGGTTTTGCAAGAAAAGCTTT
* ** * * *
1361753 TCTTCCCACAAATTACT-ATA-AAGTCTAAGTTCGTGCCTCAAATGAA-ACAAACATGGATTCT-
64 TCTTCCC-C-CATTTTTGATAGAA-TCAAAGTTCGT-CCTTAAAT-AAGACAAACATGAATTCTC
* * * ** *** ** *
1361814 AGAAATGATCGTCATTCTTTTTGTGA-TAGGCTCT
124 A-CACTAATCCCCATTCTTTTCAAGATTAGGAACC
* * ** * * *
1361848 ATAAAAACATTCTCC-TCATTAGGATA-ATTGACATTGATGATTTTCTTTTGCATGGAAATCTTT
1 ATAAACACATTC-CCTTCATTAGGATACA-TGACATTGATGCTTTGGTTTTGCAAGAAAAGCTTT
* ** *** * ** * * * * * **
1361911 TCTTTGCCGTATTTTCCTTAAAATCAAAGTTTATCCTTGAATATGATAAGCATCG-ATTTTCGTT
64 TC-TTCCCCCATTTTTGATAGAATCAAAGTTCGTCCTTAAATAAGACAAACAT-GAATTCTC-AC
* * * **
1361975 AC-AGTCTCCATTCTTTTCAAGATTGGGAAGTG
126 ACTAATCCCCATTCTTTTCAAGATTAGGAA-CC
* * * * * * ** *
1362007 A-AAACATATTGCCTACGTTAGGATACACGACAATGATGCTTTGGAGTCGCAAGAAAAGCTTTTC
1 ATAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTC
* * *
1362071 TTCCTGCCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCACACT
66 TTCC-CCCATTTTTGATAGAATCAAAGTTCGTC-CTTAAATAAGACAAACATGAATTCTCACACT
* *
1362136 AATCCCCATTCTTTTCAAGATTAAGCACC
129 AATCCCCATTCTTTTCAAGATTAGGAACC
* * * * * * * ** * *
1362165 GTAAACATAGTCTTCTT-ATAAGGATACATGATATTGAAGCTTTGGCCTCGCAA-CAAAGCTTTT
1 ATAAACACATTC-CCTTCATTAGGATACATGACATTGATGCTTTGGTTTTGCAAGAAAAGCTTTT
* * * * * * * *
1362228 CTTCCCACCAATTATTG-TA-AAGTCTAAGTCCGTGCCTCAAATGAGACAAATATGGATTGT-AG
65 CTTCCC-CC-ATTTTTGATAGAA-TCAAAGTTCGT-CCTTAAATAAGACAAACATGAATTCTCA-
* * * * * *** * *
1362290 TAATGATCTCCAATCTTTTTGTGA-TAAGACACT
125 CACTAATCCCCATTCTTTTCAAGATTAGGA-ACC
* * * * * * * * ** * * *
1362323 ATAAACAAAATCTCC-TCAATAGGATAAAAGACACTGAAGTTTTTCTTTTGCATGGAAATCTTTT
1 ATAAACACATTC-CCTTCATTAGGATACATGACATTGATGCTTTGGTTTTGCAAGAAAAGCTTTT
* * * * * *
1362387 CTTTCCCCTATTTCCTT-A-A-AATGAAAGTTCATCCCTTGAATAAGACAAGCATCAATTCTC-C
65 C-TTCCCCCATTT--TTGATAGAATCAAAGTTCGT-CCTTAAATAAGACAAACATGAATTCTCAC
* * * *
1362448 TAAC-AGTCCCCATTCTCTTGAAGATTGGGAAGCC
126 --ACTAATCCCCATTCTTTTCAAGATTAGGAA-CC
* *
1362482 A-AAACACATTCCCTTCGTTAGGATACATGACATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTC
1 ATAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTC
* * *
1362546 TTCCCGCCGTTTTTGATAGAATCAAAGTTTGTCGCTTAAATAAGACAAACATGAATACTCACACT
66 TTCCC-CCATTTTTGATAGAATCAAAGTTCGTC-CTTAAATAAGACAAACATGAATTCTCACACT
*
1362611 AATCCCCATTCTTTTCAAGATTAGGCACC
129 AATCCCCATTCTTTTCAAGATTAGGAACC
* * * * * *
1362640 ATAAACATAGT-CTTCTCATTAGGATACATGATATTGATGCTTTGGTCTTGCAACACAAAGGC-T
1 ATAAACACATTCCCT-TCATTAGGATACATGACATTGATGCTTTGGTTTTGCAAGA-AAA-GCTT
* * * * * * *
1362703 TTCTTCCCACCAATTGTTGCA-A-AGTCTAAGTTAGTGCCTCAAATGAGACAAACATGGATTCT-
63 TTCTTCCC-CC-ATTTTTG-ATAGAATCAAAGTTCGT-CCTTAAATAAGACAAACATGAATTCTC
* * * *** * ** * * *
1362765 AGAAATGATGGTCGTTCCTTTT-GTGATAACG-CCC
124 A-CACTAATCCCCATT-CTTTTCAAGATTAGGAACC
** * * * ** * * *
1362799 TATAAACACATT-TTTCTCATTAGGATAAAAGACATTGATGTTTTTCTTTTGCATGGAAATCTTT
1 -ATAAACACATTCCCT-TCATTAGGATACATGACATTGATGCTTTGGTTTTGCAAGAAAAGCTTT
* ** * * * * * * *
1362863 TCTTTCCCCTATTTTTCTTAAAATGAAAGTTCATCCCTTGAATAGGACAAGCCTCG-ATTCTC-C
64 TC-TTCCCCCATTTTTGATAGAATCAAAGTTCGT-CCTTAAATAAGACAAACAT-GAATTCTCAC
* * *
1362926 -CTAACAGTCCCCATTCTTTTTAGGATTGGGAAACC
126 ACT-A-A-TCCCCATTCTTTTCAAGATTAGG-AACC
** * * * * *
1362961 A-AAACACATTCCCTTTGTTAGAATACACGACATTGACGCTTTAGTGTTGCAAGAAAAGCTTTTC
1 ATAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTC
* * ** *
1363025 TTCCCGCCGTTTTTGATAGAATCAAAG-TCAGTCTCTTAAACAAGACAAACATGAATAGTCACTC
66 TTCCC-CCATTTTTGATAGAATCAAAGTTC-GTC-CTTAAATAAGACAAACATGAATTCTCACAC
* *
1363089 TAATCCCCATTCTTTTCAGGATTAGGCACC
128 TAATCCCCATTCTTTTCAAGATTAGGAACC
* * * * * *
1363119 ATAAACACAGT-CTTCTCATTAGGATACATGATATTGATGCTTTGGTTTCGCGACAAAAGC-TTT
1 ATAAACACATTCCCT-TCATTAGGATACATGACATTGATGCTTTGGTTTTGCAAGAAAAGCTTTT
* * * * ** ** * * * * *
1363182 CTTCTCACTAATTGTGGCA-AAGTTTAAGTTCGCACCTCAAATGAGACAAACATGGATTCT-AGT
65 CTTC-CCCCATTTTTGATAGAA-TCAAAGTTCG-TCCTTAAATAAGACAAACATGAATTCTCA-C
* * ** *** * *
1363245 AATGATCTTCATTCTTTTTGTGATAAGGAACT
126 ACTAATCCCCATTCTTTTCAAGATTAGGAACC
* ** * * *
1363277 ATAAACACATTCTCC-TCATTAGGATA-ATTGACATTGATGATTTTCTTTTGCATGGAAATCTTT
1 ATAAACACATTC-CCTTCATTAGGATACA-TGACATTGATGCTTTGGTTTTGCAAGAAAAGCTTT
* ** *** * ** * * * * *
1363340 TCTTTGCCGTATTTTCCTTAAAATCAAAGTTTATCCTTGAATATGATAAGCATCG-ATTTTC-CT
64 TC-TTCCCCCATTTTTGATAGAATCAAAGTTCGTCCTTAAATAAGACAAACAT-GAATTCTCAC-
* * * **
1363403 TAC-AGTCTCCATTCTTTTCAAGATTGGGAAGTG
126 -ACTAATCCCCATTCTTTTCAAGATTAGGAA-CC
* * * * * * ** *
1363436 A-AAACATATTGCCTACGTTAGGATACACGACAATGATGCTTTGGAGTCGCAAGAAAAGCTTTTC
1 ATAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTC
* * *
1363500 TTCCTGCCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCACACT
66 TTCC-CCCATTTTTGATAGAATCAAAGTTCGTC-CTTAAATAAGACAAACATGAATTCTCACACT
* *
1363565 AATCCCCATTCTTTTCAAGATTAAGCACC
129 AATCCCCATTCTTTTCAAGATTAGGAACC
* * * * * * * ** * *
1363594 ATAAACATAGTCTTCTT-ATAAGGATACATGATATTGAAGCTTCGGCCTCGCAA-CAAAGCTTTT
1 ATAAACACATTC-CCTTCATTAGGATACATGACATTGATGCTTTGGTTTTGCAAGAAAAGCTTTT
* * * * * * * *
1363657 CTTCCCACCAATTATTG-TA-AAGTCTAAGTCCGTGCCTCAAATGAGACAAATATGGATTGT-AG
65 CTTCCC-CC-ATTTTTGATAGAA-TCAAAGTTCGT-CCTTAAATAAGACAAACATGAATTCTCA-
* * * * * *** * *
1363719 TAATGATCTCCAATCTTTTTGTGA-TAAGACACT
125 CACTAATCCCCATTCTTTTCAAGATTAGGA-ACC
* * * * * * * * ** * * *
1363752 ATAAACAAAATCTCC-TCAATAGGATAAAAGACACTGAAGTTTTTCTTTTGCATGGAAATCTTTT
1 ATAAACACATTC-CCTTCATTAGGATACATGACATTGATGCTTTGGTTTTGCAAGAAAAGCTTTT
* *** * * * * *
1363816 CTTTCCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTCAATAAGACAAACATCAATTCTC-CTA
65 C-TTCCCCCATTTTTGATAGAATCAAAGTTCGT-CCTTAAATAAGACAAACATGAATTCTCAC--
* * * *
1363880 AC-AGTCCCCATTCTCTTGAAGATTGGGAAGCC
126 ACTAATCCCCATTCTTTTCAAGATTAGGAA-CC
* *
1363912 A-AAACACATTCCCTTCGTTAGGATACATGACATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTC
1 ATAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTC
* * * *
1363976 TTCCCGCCGTTTTTGATAGAATCAAAGTTTGTCGCTTAAATAAGACAAACATAAATACTCACACT
66 TTCCC-CCATTTTTGATAGAATCAAAGTTCGTC-CTTAAATAAGACAAACATGAATTCTCACACT
*
1364041 AATCCCCATTCTTTTCAAGATTAGGCACC
129 AATCCCCATTCTTTTCAAGATTAGGAACC
* * * * * * *
1364070 ATAAACATAGT-CTTCTCATTAGGATACATGATATTGATGCTTTGGTCTCGCAACACAAAGGC-T
1 ATAAACACATTCCCT-TCATTAGGATACATGACATTGATGCTTTGGTTTTGCAAGA-AAA-GCTT
* ** * * * * *
1364133 TTCTTCCCACCAATTATTGCA-A-AGCCTAAGTTAGTGCCTCAAATGAGACAAACATGGATTCT-
63 TTCTTCCC-CC-ATTTTTG-ATAGAATCAAAGTTCGT-CCTTAAATAAGACAAACATGAATTCTC
* * * *** * *** * * *
1364195 AGAAATGATGGTCGTTCTTTTTGTGATAACG-CCC
124 A-CACTAATCCCCATTCTTTTCAAGATTAGGAACC
** * * * ** * * * *
1364229 TATAAACACATT-TTTCTCATTAGGATAAAAGACATTGATGTTTTTCTTTTTCATGGAAATCTTT
1 -ATAAACACATTCCCT-TCATTAGGATACATGACATTGATGCTTTGGTTTTGCAAGAAAAGCTTT
* ** * * * * * * *
1364293 TCTTTCCCCTATTTTTCTTAAAATGAAAGTTCATCCCTTGAATAGGACAAGCCTCG-ATTCTC-C
64 TC-TTCCCCCATTTTTGATAGAATCAAAGTTCGT-CCTTAAATAAGACAAACAT-GAATTCTCAC
* *
1364356 -CTAACAGTCCCCATTCTTTTCAGGATTGGGAAACC
126 ACT-A-A-TCCCCATTCTTTTCAAGATTAGG-AACC
** * * * * * * *
1364391 A-AAACACATTCCCTTTGTTAGAATACACGAAATTGACGCTTTAGTGTCGCAAGAAAAGCTTTTC
1 ATAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTC
* * ** *
1364455 TTCCCACCGTTTTTGATAGAATCAAAG-TCAGTCTCTTAAACAAGACAAACATGAATAGTCACTC
66 TTCCC-CCATTTTTGATAGAATCAAAGTTC-GTC-CTTAAATAAGACAAACATGAATTCTCACAC
* *
1364519 TAATCCCCATTCTTTTCAGGATTAGGCACC
128 TAATCCCCATTCTTTTCAAGATTAGGAACC
* * * * * *
1364549 ATAAACACAGT-CTTCTCATTAGGATACATGATATTGATGCTTTGGTTTCGCGACAAAAGC-TTT
1 ATAAACACATTCCCT-TCATTAGGATACATGACATTGATGCTTTGGTTTTGCAAGAAAAGCTTTT
* * * * ** ** * * * * *
1364612 CTTCTCACTAATTGTGGCA-AAGTTTAAGTTCGCACCTCAAATGAGACAAACATGGATTCT-AGT
65 CTTC-CCCCATTTTTGATAGAA-TCAAAGTTCG-TCCTTAAATAAGACAAACATGAATTCTCA-C
* * ** *** * * *
1364675 AATGATCTTCATTCTTTTTGTGATAAAGAACT
126 ACTAATCCCCATTCTTTTCAAGATTAGGAACC
* ** * * **
1364707 ATAAACACATTCTCC-TCATTAGGATA-ATTGACATTGATGATTTTCTTTTGCATGGAAATATTT
1 ATAAACACATTC-CCTTCATTAGGATACA-TGACATTGATGCTTTGGTTTTGCAAGAAAAGCTTT
* ** *** * ** * * * * * * ***
1364770 TCTTTACCGTATTTTCCTTAAAATCAAAGTTTATCCTTGAATATGATAAGCATCGATTTTTGTTA
64 TC-TTCCCCCATTTTTGATAGAATCAAAGTTCGTCCTTAAATAAGACAAACAT-GAATTCTCACA
* * * * **
1364835 C-AGTCTCTATTCTTTTCAAGATTGGGAAGTG
127 CTAATCCCCATTCTTTTCAAGATTAGGAA-CC
* * * * * * ** *
1364866 A-AAACATATTGCCTACGTTAGGATACACGACAATGATGCTTTGGAGTCGCAAGAAAAGCTTTTC
1 ATAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTC
* * *
1364930 TTCCTGCCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCACACT
66 TTCC-CCCATTTTTGATAGAATCAAAGTTCGTC-CTTAAATAAGACAAACATGAATTCTCACACT
* *
1364995 AATCCCCATTCTTTTCAAGATTAAGCACC
129 AATCCCCATTCTTTTCAAGATTAGGAACC
* * * * * * * ** * *
1365024 ATAAACATAGTCTTCTT-ATAAGGATACATGATATTGAAGCTTCGGCCTCGCAA-CAAAGCTTTT
1 ATAAACACATTC-CCTTCATTAGGATACATGACATTGATGCTTTGGTTTTGCAAGAAAAGCTTTT
* * * * * * * *
1365087 CTTCCCACCAATTATTG-TA-AAGTCTAAGTCCGTGCCTCAAATGAGACAAATATGGATTGT-AG
65 CTTCCC-CC-ATTTTTGATAGAA-TCAAAGTTCGT-CCTTAAATAAGACAAACATGAATTCTCA-
* * * * * *** * *
1365149 TAATGATCTCCAATCTTTTTGTGA-TAAGACACT
125 CACTAATCCCCATTCTTTTCAAGATTAGGA-ACC
* * * * * * * * ** * * *
1365182 ATAAACAAAATCTCC-TCAATAGGATAAAAGACACTGAAGTTTTTCTTTTGCATGGAAATCTTTT
1 ATAAACACATTC-CCTTCATTAGGATACATGACATTGATGCTTTGGTTTTGCAAGAAAAGCTTTT
* *** * * * * *
1365246 CTTTCCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTCAATAAGACAAACATCAATTCTC-CTA
65 C-TTCCCCCATTTTTGATAGAATCAAAGTTCGT-CCTTAAATAAGACAAACATGAATTCTCAC--
* * * *
1365310 AC-AGTCCCCATTCTCTTGAAGATTGGGAAGCC
126 ACTAATCCCCATTCTTTTCAAGATTAGGAA-CC
* * *
1365342 A-AAACACATTCCCTTCGTTAGGATACATGACATTAATGCTTTGGTGTTGCAAGAAAAGCTTTTC
1 ATAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTC
* * * *
1365406 TTCCCGCCGTTTTTGATAGAATCAAAGTTTGTCGCTTAAATAAGACAAACATAAATACTCACACT
66 TTCCC-CCATTTTTGATAGAATCAAAGTTCGTC-CTTAAATAAGACAAACATGAATTCTCACACT
*
1365471 AATCCCCATTCTTTTCAAGATTAGGCACC
129 AATCCCCATTCTTTTCAAGATTAGGAACC
* * * * * * *
1365500 ATAAACATAGT-CTTCTCATTAGGATACATGATATTGATGCTTTGGTCTCGCAACACAAAGGC-T
1 ATAAACACATTCCCT-TCATTAGGATACATGACATTGATGCTTTGGTTTTGCAAGA-AAA-GCTT
* ** * * * * *
1365563 TTCTTCCCACCAATTATTGCA-A-AGCCTAAGTTAGTGCCTCAAATGAGACAAACATGGATTCT-
63 TTCTTCCC-CC-ATTTTTG-ATAGAATCAAAGTTCGT-CCTTAAATAAGACAAACATGAATTCTC
* * * *** * *** * * *
1365625 AGAAATGATGGTCGTTCTTTTTGTGATAACG-CCC
124 A-CACTAATCCCCATTCTTTTCAAGATTAGGAACC
** * * * ** * * * *
1365659 TATAAACACATT-TTTCTCATTAGGATAAAAGACATTGATGTTTTTCTTTTTCATGGAAATCTTT
1 -ATAAACACATTCCCT-TCATTAGGATACATGACATTGATGCTTTGGTTTTGCAAGAAAAGCTTT
* ** * * * * * * *
1365723 TCTTTCCCCTATTTTTCTTAAAATGAAAGTTCATCCCTTGAATAGGACAAGCCTCG-ATTCTC-C
64 TC-TTCCCCCATTTTTGATAGAATCAAAGTTCGT-CCTTAAATAAGACAAACAT-GAATTCTCAC
* *
1365786 -CTAACAGTCCCCATTCTTTTCAGGATTGGGAAACC
126 ACT-A-A-TCCCCATTCTTTTCAAGATTAGG-AACC
** * * * * * * *
1365821 A-AAACACATTCCCTTTGTTAGAATACACGAAATTGACGCTTTAGTGTCGCAAGAAAAGCTTTTC
1 ATAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTC
* * ** *
1365885 TTCCCACCGTTTTTGATAGAATCAAAG-TCAGTCTCTTAAACAAGACAAACATGAATAGTCACTC
66 TTCCC-CCATTTTTGATAGAATCAAAGTTC-GTC-CTTAAATAAGACAAACATGAATTCTCACAC
* *
1365949 TAATCCCCATTCTTTTCAGGATTAGGCACC
128 TAATCCCCATTCTTTTCAAGATTAGGAACC
* * * * * *
1365979 ATAAACACAGT-CTTCTCATTAGGATACATGATATTGATGCTTTGGTTTCGCGACAAAAGC-TTT
1 ATAAACACATTCCCT-TCATTAGGATACATGACATTGATGCTTTGGTTTTGCAAGAAAAGCTTTT
* * * * ** ** * * * * *
1366042 CTTCTCACTAATTGTGGCA-AAGTTTAAGTTCGCACCTCAAATGAGACAAACATGGATTCT-AGT
65 CTTC-CCCCATTTTTGATAGAA-TCAAAGTTCG-TCCTTAAATAAGACAAACATGAATTCTCA-C
* * ** *** * * *
1366105 AATGATCTTCATTCTTTTTGTGATAAAGAACT
126 ACTAATCCCCATTCTTTTCAAGATTAGGAACC
* ** * * **
1366137 ATAAACACATTCTCC-TCATTAGGATA-ATTGACATTGATGATTTTCTTTTGCATGGAAATATTT
1 ATAAACACATTC-CCTTCATTAGGATACA-TGACATTGATGCTTTGGTTTTGCAAGAAAAGCTTT
* ** *** * ** * * * * * * ***
1366200 TCTTTACCGTATTTTCCTTAAAATCAAAGTTTATCCTTGAATATGATAAGCATCGATTTTTGTTA
64 TC-TTCCCCCATTTTTGATAGAATCAAAGTTCGTCCTTAAATAAGACAAACAT-GAATTCTCACA
* * * * **
1366265 C-AGTCTCTATTCTTTTCAAGATTGGGAAGTG
127 CTAATCCCCATTCTTTTCAAGATTAGGAA-CC
* * * * * * ** *
1366296 A-AAACATATTGCCTACGTTAGGATACACGACAATGATGCTTTGGAGTCGCAAGAAAAGCTTTTC
1 ATAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTC
* * *
1366360 TTCCTGCCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCACACT
66 TTCC-CCCATTTTTGATAGAATCAAAGTTCGTC-CTTAAATAAGACAAACATGAATTCTCACACT
* * *
1366425 AATCCCCATTATTTTCAAGATTGGGCACC
129 AATCCCCATTCTTTTCAAGATTAGGAACC
* * * * * * *
1366454 ATAAACATAGTCTTCTT-GTTAGGATACATGATATTGATGCTTTGGTTTTGCAACAAAGGC-TTT
1 ATAAACACATTC-CCTTCATTAGGATACATGACATTGATGCTTTGGTTTTGCAAGAAAAGCTTTT
1366517 CTTCCC
65 CTTCCC
1366523 ACCAATTGTT
Statistics
Matches: 3506, Mismatches: 1226, Indels: 519
0.67 0.23 0.10
Matches are distributed among these distances:
156 4 0.00
157 146 0.04
158 1230 0.35
159 1421 0.41
160 646 0.18
161 44 0.01
162 15 0.00
ACGTcount: A:0.31, C:0.20, G:0.15, T:0.34
Consensus pattern (157 bp):
ATAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTC
TTCCCCCATTTTTGATAGAATCAAAGTTCGTCCTTAAATAAGACAAACATGAATTCTCACACTAA
TCCCCATTCTTTTCAAGATTAGGAACC
Found at i:1362604 original size:475 final size:475
Alignment explanation
Indices: 1361124--1367744 Score: 8352
Period size: 475 Copynumber: 13.9 Consensus size: 475
1361114 TTAGGGTCTT
* * *
1361124 AAGAAATGCTTTTCTTCCCACCATTTTTGATAGAATCAAAG-TT-TCTCTT-AATAAGACAAACA
1 AAGAAAAGCTTTTCTTCCCGCCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACA
* * * * *
1361186 AGAAGACTCACACTAATCCCCATTCTTTTTAGGATTAGGCATCATAAACATAGT-TT-TC-----
66 TGAATACTCACACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATTAG
* * * * *
1361244 --T-CAT--TA-GGATGCTTTGGCTTCGCAACAAAGGCTTTCTTCCCACCAATTACTATAAAGCC
131 GATACATGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTATTGTAAAGTC
* * * * ** *
1361303 TAAGTTCATGCCTCAAATGAAACAAACATGGATTCTCGAAATGATCATTGTTCTTTTAGTGAT-A
196 TAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATC-TCATTCTTTTTGTGATAA
* * * * * *
1361367 GGCTCTATAAACACATTCTCCGCATTAGGATAAATGATACTGATGATTTTCTTTTGCATGAAAAT
260 GACACTATAAACACATTCTCCTCATTAGGATAAATGACATTGATGATTTTCTTTTGCATGGAAAT
* * *
1361432 CTTTTCTTTGCCCTATTTT-CTATAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTT
325 CTTTTCTTTCCCCTATTTTCCT-TAAAATCAAAGTTCATCCCTTGAATAAGACAAGCATCGATTC
* * *** * * * *
1361496 TCATAATAGTCTTTATGCCTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACAT
389 TCCTAACAGTCCCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCGTTAGGATACAC
1361561 GACATTGATGCTTTGGTGTCGC
454 GACATTGATGCTTTGGTGTCGC
* *
1361583 AAGAAAAGCTTTTCATCCC-CTCGTTTTTGATAGAATTAAAGTTTGTCTCTTAAATAAGACAAAC
1 AAGAAAAGCTTTTCTTCCCGC-CGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAAC
* * * *
1361647 ATGAATACTCACACTAATCCCTATTCTTTTCAAGATTGGGCACCATAAACATTGTCTTCTCGTTA
65 ATGAATACTCACACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATTA
* * * * * *
1361712 GGATACACGATATTGATGCTTTAGTTTTGCAACAAAGGCTTTCTTCCCACAAATTACTATAAAGT
130 GGATACATGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTATTGTAAAGT
* *
1361777 CTAAGTTCGTGCCTCAAATGAAACAAACATGGATTCTAGAAATGATCGTCATTCTTTTTGTGAT-
195 CTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATC-TCATTCTTTTTGTGATA
* * * *
1361841 AGGCTCTATAAAAACATTCTCCTCATTAGGATAATTGACATTGATGATTTTCTTTTGCATGGAAA
259 AGACACTATAAACACATTCTCCTCATTAGGATAAATGACATTGATGATTTTCTTTTGCATGGAAA
* * * * * *
1361906 TCTTTTCTTTGCCGTATTTTCCTTAAAATCAAAGTTTAT-CCTTGAATATGATAAGCATCGATTT
324 TCTTTTCTTTCCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAATAAGACAAGCATCGATTC
* * * ** * * *
1361970 TCGTTACAGTCTCCATTCTTTTCAAGATTGGGAAGTGAAAACATATTGCCTACGTTAGGATACAC
389 TCCTAACAGTCCCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCGTTAGGATACAC
* *
1362035 GACAATGATGCTTTGGAGTCGC
454 GACATTGATGCTTTGGTGTCGC
* *
1362057 AAGAAAAGCTTTTCTTCCTGCCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACA
1 AAGAAAAGCTTTTCTTCCCGCCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACA
* * * *
1362122 TGAATACTCACACTAATCCCCATTCTTTTCAAGATTAAGCACCGTAAACATAGTCTTCTTATAAG
66 TGAATACTCACACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATTAG
* **
1362187 GATACATGATATTGAAGCTTTGGCCTCGCAACAAA-GCTTTTCTTCCCACCAATTATTGTAAAGT
131 GATACATGATATTGATGCTTTGGTTTCGCAACAAAGGC-TTTCTTCCCACCAATTATTGTAAAGT
* * * *
1362251 CTAAGTCCGTGCCTCAAATGAGACAAATATGGATTGTAGTAATGATCTCCAATCTTTTTGTGATA
195 CTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCT-CATTCTTTTTGTGATA
* * * * * * *
1362316 AGACACTATAAACAAAATCTCCTCAATAGGATAAAAGACACTGAAGTTTTTCTTTTGCATGGAAA
259 AGACACTATAAACACATTCTCCTCATTAGGATAAATGACATTGATGATTTTCTTTTGCATGGAAA
* *
1362381 TCTTTTCTTTCCCCTA-TTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCAATTC
324 TCTTTTCTTTCCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAATAAGACAAGCATCGATTC
* * *
1362445 TCCTAACAGTCCCCATTCTCTTGAAGATTGGGAAGCCAAAACACATTCCCTTCGTTAGGATACAT
389 TCCTAACAGTCCCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCGTTAGGATACAC
*
1362510 GACATTGATGCTTTGGTGTTGC
454 GACATTGATGCTTTGGTGTCGC
*
1362532 AAGAAAAGCTTTTCTTCCCGCCGTTTTTGATAGAATCAAAGTTTGTCGCTTAAATAAGACAAACA
1 AAGAAAAGCTTTTCTTCCCGCCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACA
1362597 TGAATACTCACACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATTAG
66 TGAATACTCACACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATTAG
* *
1362662 GATACATGATATTGATGCTTTGGTCTT-GCAACACAAAGGCTTTCTTCCCACCAATTGTTGCAAA
131 GATACATGATATTGATGCTTTGGT-TTCGC-A-ACAAAGGCTTTCTTCCCACCAATTATTGTAAA
* * * * *
1362726 GTCTAAGTTAGTGCCTCAAATGAGACAAACATGGATTCTAGAAATGATGGTCGTTCCTTTTGTGA
193 GTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGAT-CTCATTCTTTTTGTGA
* * * * *
1362791 TAACG-CCCTATAAACACATTTTTCTCATTAGGATAAAAGACATTGATGTTTTTCTTTTGCATGG
257 TAA-GACACTATAAACACATTCTCCTCATTAGGATAAATGACATTGATGATTTTCTTTTGCATGG
* * * *
1362855 AAATCTTTTCTTTCCCCTATTTTTCTTAAAATGAAAGTTCATCCCTTGAATAGGACAAGCCTCGA
321 AAATCTTTTCTTTCCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAATAAGACAAGCATCGA
* * * * *
1362920 TTCTCCCTAACAGTCCCCATTCTTTTTAGGATTGGGAAACCAAAACACATTCCCTTTGTTAGAAT
386 TTCT-CCTAACAGTCCCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCGTTAGGAT
* * *
1362985 ACACGACATTGACGCTTTAGTGTTGC
450 ACACGACATTGATGCTTTGGTGTCGC
** *
1363011 AAGAAAAGCTTTTCTTCCCGCCGTTTTTGATAGAATCAAAGTCAGTCTCTTAAACAAGACAAACA
1 AAGAAAAGCTTTTCTTCCCGCCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACA
* * * *
1363076 TGAATAGTCACTCTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACACAGTCTTCTCATTAG
66 TGAATACTCACACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATTAG
* * * * * * * *
1363141 GATACATGATATTGATGCTTTGGTTTCGCGACAAAAGCTTTCTTCTCACTAATTGTGGCAAAGTT
131 GATACATGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTATTGTAAAGTC
**
1363206 TAAGTTCGCACCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATAA
196 TAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATC-TCATTCTTTTTGTGATAA
*
1363271 GGA-ACTATAAACACATTCTCCTCATTAGGATAATTGACATTGATGATTTTCTTTTGCATGGAAA
260 -GACACTATAAACACATTCTCCTCATTAGGATAAATGACATTGATGATTTTCTTTTGCATGGAAA
* * * * * *
1363335 TCTTTTCTTTGCCGTATTTTCCTTAAAATCAAAGTTTAT-CCTTGAATATGATAAGCATCGATTT
324 TCTTTTCTTTCCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAATAAGACAAGCATCGATTC
* * ** * * *
1363399 TCCTTACAGTCTCCATTCTTTTCAAGATTGGGAAGTGAAAACATATTGCCTACGTTAGGATACAC
389 TCCTAACAGTCCCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCGTTAGGATACAC
* *
1363464 GACAATGATGCTTTGGAGTCGC
454 GACATTGATGCTTTGGTGTCGC
* *
1363486 AAGAAAAGCTTTTCTTCCTGCCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACA
1 AAGAAAAGCTTTTCTTCCCGCCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACA
* * *
1363551 TGAATACTCACACTAATCCCCATTCTTTTCAAGATTAAGCACCATAAACATAGTCTTCTTATAAG
66 TGAATACTCACACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATTAG
* * **
1363616 GATACATGATATTGAAGCTTCGGCCTCGCAACAAA-GCTTTTCTTCCCACCAATTATTGTAAAGT
131 GATACATGATATTGATGCTTTGGTTTCGCAACAAAGGC-TTTCTTCCCACCAATTATTGTAAAGT
* * * *
1363680 CTAAGTCCGTGCCTCAAATGAGACAAATATGGATTGTAGTAATGATCTCCAATCTTTTTGTGATA
195 CTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCT-CATTCTTTTTGTGATA
* * * * * * *
1363745 AGACACTATAAACAAAATCTCCTCAATAGGATAAAAGACACTGAAGTTTTTCTTTTGCATGGAAA
259 AGACACTATAAACACATTCTCCTCATTAGGATAAATGACATTGATGATTTTCTTTTGCATGGAAA
* * * *
1363810 TCTTTTCTTTCCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTCAATAAGACAAACATCAATTC
324 TCTTTTCTTTCCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAATAAGACAAGCATCGATTC
* * *
1363875 TCCTAACAGTCCCCATTCTCTTGAAGATTGGGAAGCCAAAACACATTCCCTTCGTTAGGATACAT
389 TCCTAACAGTCCCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCGTTAGGATACAC
*
1363940 GACATTGATGCTTTGGTGTTGC
454 GACATTGATGCTTTGGTGTCGC
*
1363962 AAGAAAAGCTTTTCTTCCCGCCGTTTTTGATAGAATCAAAGTTTGTCGCTTAAATAAGACAAACA
1 AAGAAAAGCTTTTCTTCCCGCCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACA
*
1364027 TAAATACTCACACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATTAG
66 TGAATACTCACACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATTAG
* *
1364092 GATACATGATATTGATGCTTTGGTCTCGCAACACAAAGGCTTTCTTCCCACCAATTATTGCAAAG
131 GATACATGATATTGATGCTTTGGTTTCGC-A-ACAAAGGCTTTCTTCCCACCAATTATTGTAAAG
* * * * *
1364157 CCTAAGTTAGTGCCTCAAATGAGACAAACATGGATTCTAGAAATGATGGTCGTTCTTTTTGTGAT
194 TCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGAT-CTCATTCTTTTTGTGAT
* * * * * *
1364222 AACG-CCCTATAAACACATTTTTCTCATTAGGATAAAAGACATTGATGTTTTTCTTTTTCATGGA
258 AA-GACACTATAAACACATTCTCCTCATTAGGATAAATGACATTGATGATTTTCTTTTGCATGGA
* * * *
1364286 AATCTTTTCTTTCCCCTATTTTTCTTAAAATGAAAGTTCATCCCTTGAATAGGACAAGCCTCGAT
322 AATCTTTTCTTTCCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAATAAGACAAGCATCGAT
* * * *
1364351 TCTCCCTAACAGTCCCCATTCTTTTCAGGATTGGGAAACCAAAACACATTCCCTTTGTTAGAATA
387 TCT-CCTAACAGTCCCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCGTTAGGATA
* * *
1364416 CACGAAATTGACGCTTTAGTGTCGC
451 CACGACATTGATGCTTTGGTGTCGC
* ** *
1364441 AAGAAAAGCTTTTCTTCCCACCGTTTTTGATAGAATCAAAGTCAGTCTCTTAAACAAGACAAACA
1 AAGAAAAGCTTTTCTTCCCGCCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACA
* * * *
1364506 TGAATAGTCACTCTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACACAGTCTTCTCATTAG
66 TGAATACTCACACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATTAG
* * * * * * * *
1364571 GATACATGATATTGATGCTTTGGTTTCGCGACAAAAGCTTTCTTCTCACTAATTGTGGCAAAGTT
131 GATACATGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTATTGTAAAGTC
**
1364636 TAAGTTCGCACCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATAA
196 TAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATC-TCATTCTTTTTGTGAT-A
*
1364701 AGA-ACTATAAACACATTCTCCTCATTAGGATAATTGACATTGATGATTTTCTTTTGCATGGAAA
259 AGACACTATAAACACATTCTCCTCATTAGGATAAATGACATTGATGATTTTCTTTTGCATGGAAA
* * * * * * *
1364765 TATTTTCTTTACCGTATTTTCCTTAAAATCAAAGTTTAT-CCTTGAATATGATAAGCATCGATTT
324 TCTTTTCTTTCCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAATAAGACAAGCATCGATTC
** * * * ** * * *
1364829 TTGTTACAGTCTCTATTCTTTTCAAGATTGGGAAGTGAAAACATATTGCCTACGTTAGGATACAC
389 TCCTAACAGTCCCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCGTTAGGATACAC
* *
1364894 GACAATGATGCTTTGGAGTCGC
454 GACATTGATGCTTTGGTGTCGC
* *
1364916 AAGAAAAGCTTTTCTTCCTGCCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACA
1 AAGAAAAGCTTTTCTTCCCGCCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACA
* * *
1364981 TGAATACTCACACTAATCCCCATTCTTTTCAAGATTAAGCACCATAAACATAGTCTTCTTATAAG
66 TGAATACTCACACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATTAG
* * **
1365046 GATACATGATATTGAAGCTTCGGCCTCGCAACAAA-GCTTTTCTTCCCACCAATTATTGTAAAGT
131 GATACATGATATTGATGCTTTGGTTTCGCAACAAAGGC-TTTCTTCCCACCAATTATTGTAAAGT
* * * *
1365110 CTAAGTCCGTGCCTCAAATGAGACAAATATGGATTGTAGTAATGATCTCCAATCTTTTTGTGATA
195 CTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCT-CATTCTTTTTGTGATA
* * * * * * *
1365175 AGACACTATAAACAAAATCTCCTCAATAGGATAAAAGACACTGAAGTTTTTCTTTTGCATGGAAA
259 AGACACTATAAACACATTCTCCTCATTAGGATAAATGACATTGATGATTTTCTTTTGCATGGAAA
* * * *
1365240 TCTTTTCTTTCCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTCAATAAGACAAACATCAATTC
324 TCTTTTCTTTCCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAATAAGACAAGCATCGATTC
* * *
1365305 TCCTAACAGTCCCCATTCTCTTGAAGATTGGGAAGCCAAAACACATTCCCTTCGTTAGGATACAT
389 TCCTAACAGTCCCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCGTTAGGATACAC
* *
1365370 GACATTAATGCTTTGGTGTTGC
454 GACATTGATGCTTTGGTGTCGC
*
1365392 AAGAAAAGCTTTTCTTCCCGCCGTTTTTGATAGAATCAAAGTTTGTCGCTTAAATAAGACAAACA
1 AAGAAAAGCTTTTCTTCCCGCCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACA
*
1365457 TAAATACTCACACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATTAG
66 TGAATACTCACACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATTAG
* *
1365522 GATACATGATATTGATGCTTTGGTCTCGCAACACAAAGGCTTTCTTCCCACCAATTATTGCAAAG
131 GATACATGATATTGATGCTTTGGTTTCGC-A-ACAAAGGCTTTCTTCCCACCAATTATTGTAAAG
* * * * *
1365587 CCTAAGTTAGTGCCTCAAATGAGACAAACATGGATTCTAGAAATGATGGTCGTTCTTTTTGTGAT
194 TCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGAT-CTCATTCTTTTTGTGAT
* * * * * *
1365652 AACG-CCCTATAAACACATTTTTCTCATTAGGATAAAAGACATTGATGTTTTTCTTTTTCATGGA
258 AA-GACACTATAAACACATTCTCCTCATTAGGATAAATGACATTGATGATTTTCTTTTGCATGGA
* * * *
1365716 AATCTTTTCTTTCCCCTATTTTTCTTAAAATGAAAGTTCATCCCTTGAATAGGACAAGCCTCGAT
322 AATCTTTTCTTTCCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAATAAGACAAGCATCGAT
* * * *
1365781 TCTCCCTAACAGTCCCCATTCTTTTCAGGATTGGGAAACCAAAACACATTCCCTTTGTTAGAATA
387 TCT-CCTAACAGTCCCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCGTTAGGATA
* * *
1365846 CACGAAATTGACGCTTTAGTGTCGC
451 CACGACATTGATGCTTTGGTGTCGC
* ** *
1365871 AAGAAAAGCTTTTCTTCCCACCGTTTTTGATAGAATCAAAGTCAGTCTCTTAAACAAGACAAACA
1 AAGAAAAGCTTTTCTTCCCGCCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACA
* * * *
1365936 TGAATAGTCACTCTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACACAGTCTTCTCATTAG
66 TGAATACTCACACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATTAG
* * * * * * * *
1366001 GATACATGATATTGATGCTTTGGTTTCGCGACAAAAGCTTTCTTCTCACTAATTGTGGCAAAGTT
131 GATACATGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTATTGTAAAGTC
**
1366066 TAAGTTCGCACCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATAA
196 TAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATC-TCATTCTTTTTGTGAT-A
*
1366131 AGA-ACTATAAACACATTCTCCTCATTAGGATAATTGACATTGATGATTTTCTTTTGCATGGAAA
259 AGACACTATAAACACATTCTCCTCATTAGGATAAATGACATTGATGATTTTCTTTTGCATGGAAA
* * * * * * *
1366195 TATTTTCTTTACCGTATTTTCCTTAAAATCAAAGTTTAT-CCTTGAATATGATAAGCATCGATTT
324 TCTTTTCTTTCCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAATAAGACAAGCATCGATTC
** * * * ** * * *
1366259 TTGTTACAGTCTCTATTCTTTTCAAGATTGGGAAGTGAAAACATATTGCCTACGTTAGGATACAC
389 TCCTAACAGTCCCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCGTTAGGATACAC
* *
1366324 GACAATGATGCTTTGGAGTCGC
454 GACATTGATGCTTTGGTGTCGC
* *
1366346 AAGAAAAGCTTTTCTTCCTGCCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACA
1 AAGAAAAGCTTTTCTTCCCGCCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACA
* * **
1366411 TGAATACTCACACTAATCCCCATTATTTTCAAGATTGGGCACCATAAACATAGTCTTCTTGTTAG
66 TGAATACTCACACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATTAG
* * *
1366476 GATACATGATATTGATGCTTTGGTTTTGCAACAAAGGCTTTCTTCCCACCAATTGTTGTAATGTC
131 GATACATGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTATTGTAAAGTC
* **
1366541 TAAGTTCATGCCTGTAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATAA
196 TAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATC-TCATTCTTTTTGTGATAA
* * *
1366606 GGCACTATAAACACATTCTCCTCTTTAGGATAAATGACATTGATGATTTTCTTTCGCATGGAAAT
260 GACACTATAAACACATTCTCCTCATTAGGATAAATGACATTGATGATTTTCTTTTGCATGGAAAT
* * * *
1366671 CGTTTCTTTACCCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACATGCATCGATTCT
325 CTTTTCTTTCCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
*
1366736 -CTGAACAGTTTCCATTCTGCTCCATTCTTGTAACCGTCTCCATTCTTATTAAGGTTGGGAAGCC
390 CCT-AACAG-------TC--C-CCA----T-T---C-T-T---TTC-----AAGATTGGGAAGCC
** * * * * * *
1366800 AATGCACATTTCCTTCATTAGGATACATGACGTTGATGCTTTGGTGCCGT
426 AAAACACATTCCCTTCGTTAGGATACACGACATTGATGCTTTGGTGTCGC
* *
1366850 AAGAAAAGC-TTTCTTCCTGCCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACA
1 AAGAAAAGCTTTTCTTCCCGCCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACA
*
1366914 TGAATACTCACACTAATCCCCATTCTTTTCAAGATTGGGCACCATAAACATAGTCTTCTCATTAG
66 TGAATACTCACACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATTAG
* * * * * *
1366979 GATACACGATATTGATGCATTGGTTTTGCAACAAAGGCTTTCTTCCCACCAATTGTTTTAAATTC
131 GATACATGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTATTGTAAAGTC
1367044 TAAGTTCGTGCC-CGAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATA
196 TAAGTTCGTGCCTC-AAATGAGACAAACATGGATTCTAGTAATGATC-TCATTCTTTTTGTGATA
* * * *
1367108 AGGCACTAGAAACACATTCTCCGCATTAGGATAAATGACATTGATGATTTTCTTTTGCATGAAAA
259 AGACACTATAAACACATTCTCCTCATTAGGATAAATGACATTGATGATTTTCTTTTGCATGGAAA
* * * * *
1367173 TCTTTTCTTTGCCCGATTATCCTTAAGATCAAAGTTCATCCCTTGAATAAGACATGCATCGATTC
324 TCTTTTCTTTCCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAATAAGACAAGCATCGATTC
** ** * * ** *
1367238 T-CTGAACAGTTTCCATTCTGCTCAAGATTTGGAAGCTAAAACACATGGCCTTCATTAGGATACA
389 TCCT-AACAGTCCCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCGTTAGGATACA
* * *
1367302 CGACATTCATGCTATGATGTCGC
453 CGACATTGATGCTTTGGTGTCGC
* * * *
1367325 AAGAAAAGCTTTTCTTCCCCCCTGTTTCTGATAGAATCAAAGTCTATCTCTTAAATAAGACAAAC
1 AAGAAAAGCTTTTCTTCCCGCC-GTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAAC
* * *
1367390 ATGAATACTCACACAAATCCCCATTCTTTGCAGGATTAGGCACCATAAACATAGTCTTCTCATTA
65 ATGAATACTCACACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATTA
* *
1367455 GGATACATG--A-T-A---------TT----------G--TTCTTCCCACCAATTGTTCTAAAGT
130 GGATACATGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTATTGTAAAGT
* * *
1367495 CTAAGGTCGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCATCATTCTTTTAGTGATA
195 CTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATC-TCATTCTTTTTGTGATA
* * * *
1367560 AGGCACTATAAACACATTCT-CTGCATTAGGATAATTGACATTGATGTTTTTCGTTTGCATGGAA
259 AGACACTATAAACACATTCTCCT-CATTAGGATAAATGACATTGATGATTTTCTTTTGCATGGAA
* ** * *
1367624 ATCTTTTCTTTGCCC-AACTACCGTTAAAATCAAAGTTCATCCCTTGAACAAGACAAGCATCGAT
323 ATCTTTTCTTTCCCCTATTTTCC-TTAAAATCAAAGTTCATCCCTTGAATAAGACAAGCATCGAT
* * *
1367688 TCTCCTAACAGTCTCCATTTTTTTCAAGATTGGGAAGCCAAAACACATTTCCTTCGT
387 TCTCCTAACAGTCCCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCGT
1367745 CAAAAGAAAA
Statistics
Matches: 5376, Mismatches: 688, Indels: 203
0.86 0.11 0.03
Matches are distributed among these distances:
451 4 0.00
452 236 0.04
453 3 0.00
454 1 0.00
458 1 0.00
459 35 0.01
460 2 0.00
461 6 0.00
462 59 0.01
463 2 0.00
464 4 0.00
471 1 0.00
472 2 0.00
473 4 0.00
474 355 0.07
475 1718 0.32
476 585 0.11
477 784 0.15
478 451 0.08
479 678 0.13
480 2 0.00
483 2 0.00
484 1 0.00
485 1 0.00
486 2 0.00
488 1 0.00
489 1 0.00
490 1 0.00
491 1 0.00
493 3 0.00
494 1 0.00
495 1 0.00
496 2 0.00
499 3 0.00
503 365 0.07
504 58 0.01
ACGTcount: A:0.31, C:0.20, G:0.15, T:0.34
Consensus pattern (475 bp):
AAGAAAAGCTTTTCTTCCCGCCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACA
TGAATACTCACACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATTAG
GATACATGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTATTGTAAAGTC
TAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTCATTCTTTTTGTGATAAG
ACACTATAAACACATTCTCCTCATTAGGATAAATGACATTGATGATTTTCTTTTGCATGGAAATC
TTTTCTTTCCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTC
CTAACAGTCCCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCGTTAGGATACACGA
CATTGATGCTTTGGTGTCGC
Found at i:1368080 original size:158 final size:158
Alignment explanation
Indices: 1367877--1368185 Score: 503
Period size: 158 Copynumber: 2.0 Consensus size: 158
1367867 AGTCTTCTCA
* * * *
1367877 TTAGGATACATGATTTTGAAGCTTTGGTTTTGCAACAAAGGCTTTCTTCCCACCAATTGTTGTAA
1 TTAGGATACATGATTATAAAGCTTTGGTTTCGCAACAAAAGCTTTCTTCCCACCAATTGTTGTAA
*
1367942 AGTCTAAGTTCGTACCTCAAATGAGACAAATATGGATTCTACTAATGATTTTCATTCTTTTTGTG
66 AGTCTAAGTTCGTACCTCAAATGAGACAAATATGGATTCTACTAATGATCTTCATTCTTTTTGTG
**
1368007 ATTTGGCACTACAAACACATTTTCCTCT
131 ATAAGGCACTACAAACACATTTTCCTCT
1368035 TTAGGATACATGA-TATAAATGCTTTGGTTTCGCAACAAAAGCTTTCTTCCCACCAATTGTTGTA
1 TTAGGATACATGATTATAAA-GCTTTGGTTTCGCAACAAAAGCTTTCTTCCCACCAATTGTTGTA
* * *
1368099 AAGTCTAAGTTCGTGCCTTAAATGAGACAAATATGGATTCTAGTAATGATCTTCATTCTTTTTGT
65 AAGTCTAAGTTCGTACCTCAAATGAGACAAATATGGATTCTACTAATGATCTTCATTCTTTTTGT
*
1368164 GATAAGGCACTATAAACACATT
130 GATAAGGCACTACAAACACATT
1368186 CTCGGCATTA
Statistics
Matches: 139, Mismatches: 11, Indels: 2
0.91 0.07 0.01
Matches are distributed among these distances:
157 4 0.03
158 135 0.97
ACGTcount: A:0.30, C:0.17, G:0.16, T:0.37
Consensus pattern (158 bp):
TTAGGATACATGATTATAAAGCTTTGGTTTCGCAACAAAAGCTTTCTTCCCACCAATTGTTGTAA
AGTCTAAGTTCGTACCTCAAATGAGACAAATATGGATTCTACTAATGATCTTCATTCTTTTTGTG
ATAAGGCACTACAAACACATTTTCCTCT
Found at i:1368733 original size:476 final size:476
Alignment explanation
Indices: 1368036--1370547 Score: 3171
Period size: 476 Copynumber: 5.3 Consensus size: 476
1368026 TTTTCCTCTT
* ** *
1368036 TAGGATACATGATATAAATGCTTTGGTTTCGCAACAAAAGCTTTCTTCCCACCAATTGTTGTAAA
1 TAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTGTTGTAAA
*
1368101 GTCTAAGTTCGTGCCTTAAATGAGACAAATATGGATTCTAGTAATGATCTTCATTCTTTTTGTGA
66 GTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATTCTTTTTGTGA
* *
1368166 TAAGGCACTATAAACACATTCTCGGCATTAGGATAATTGACATTGATGTTTTTCTTTTGCTTGGA
131 TAAGGCACTATAAACACATTCTCCGCATTAGGATAATTGACATTGATGTTTTTCTTTTGCATGGA
* *
1368231 AATCTTTTGTTTGCCCAATCATCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGAT
196 AATCTTTTCTTTGCCCAATTATCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGAT
* ** *
1368296 TCTCATAATTA-TCTTTACTCCTTTCAAGATTGGGAAGCCAAAACACATTGCGTTCATTAGGATA
261 TCTCATAA-CAGTCTCCACTCCTTTCAAGATTGGGAAGCCAAAACACATTGCCTTCATTAGGATA
* *
1368360 CGCGACATTGATGCTTTGGTGTCTCAAGAAAAGCATTTCTTCTCATCGTTTTTGATAGAATCAAA
325 CACGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCTCATCGTTTTTGATAGAATCAAA
* * * *
1368425 ATTGGTCTCTTAAAGAAGAAAAACATGAATACTCACACTAATCCCCATTCTTTTCAGGATTAGGA
390 GTTTGTCTCTTAAAGAAGACAAACATGAATACTCACACTAATCCCCATTCTTTTCAGGATTAGGC
*
1368490 ACCATAAACATAGTCTTCTCCG
455 ACCATAAACATAGTCTTCTCAG
* * * * *** *
1368512 TAGGATACACGATGTTGTTGCCTTAGTTTAAAAACAAAGGCTTTCTTCCCACCAATTGTTGCAAA
1 TAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTGTTGTAAA
* * * * *
1368577 GTCTAACTTCGTGCCTCATATGAGATAAATATGGATTCCAGTAATGATCATCATTCTTTTTGTGA
66 GTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATTCTTTTTGTGA
1368642 TAAGGCACTATAAACACATTCTCCGCATTCA-GATAATTGACATTGATGTTTTTCTTTTGCATGG
131 TAAGGCACTATAAACACATTCTCCGCATT-AGGATAATTGACATTGATGTTTTTCTTTTGCATGG
* * *
1368706 AAATCTTTTCTTTGCACAATTATCCTTAAAATGAAAGTTCATCCTTTGAATAAGACAAGCATAGA
195 AAATCTTTTCTTTGCCCAATTATCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGA
* * * * *
1368771 TTCTCGTAATAGTCTCCACTTCTTTCAAGATTGGGAAGCCAAAACACATTGCCTTCGTTGGGATA
260 TTCTCATAACAGTCTCCACTCCTTTCAAGATTGGGAAGCCAAAACACATTGCCTTCATTAGGATA
* * * * * *
1368836 CATGACATTGATGCTTTGGGGTCTCAAGAAATGATTTTCTTCTCGTCGTTTTTGATAGAATC-AT
325 CACGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCTCATCGTTTTTGATAGAATCAAA
* * *
1368900 GTTTGTCACTTAAATG-AGACAAACATGAATACTCACACTAATCCCTATTCTTTTCAGGGTTAGG
390 GTTTGTCTCTTAAA-GAAGACAAACATGAATACTCACACTAATCCCCATTCTTTTCAGGATTAGG
* *
1368964 CACCAGAAACATAGTTTTCTC-G
454 CACCATAAACATAGTCTTCTCAG
* * * *
1368986 TTAAGATACATC-ATATTGAAGCTTTGGTTTTGCAACAGAGGCTTTCTTCCCACCAATTGTTGTA
1 -TAGGATACA-CGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTGTTGTA
* * * *
1369050 AACTCTAAGTTCGTGACTCAAATGAGACAAATATGGATTCTAGTAATGATCATCATTCTTTTTAT
64 AAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATTCTTTTTGT
** ** * *
1369115 GATAAGGCACTATAAACACATTCTCTTCATTAGGATAAAAGACATTGGTGTTTTTGTTTTGCATG
129 GATAAGGCACTATAAACACATTCTCCGCATTAGGATAATTGACATTGATGTTTTTCTTTTGCATG
* * *
1369180 GAAATCTTTTCTTTGCCCAATTATCCTTAAAATGAAAATTAATCCCTTGAATAAGATAAGCATCG
194 GAAATCTTTTCTTTGCCCAATTATCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCG
* * *
1369245 ATTCTCATAACAGTCTTCACTCATTTAAAGATTGGGAAGCC-AAA-ACA-------C------AT
259 ATTCTCATAACAGTCTCCACTCCTTTCAAGATTGGGAAGCCAAAACACATTGCCTTCATTAGGAT
* * * *
1369295 ACACGACCTTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCTTATCATTTTTTATAGAATCAA
324 ACACGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCTCATCGTTTTTGATAGAATCAA
* * * *
1369360 AATTGGTCTCTTAAAGAAGAAAAACATGAATACTCACACTAATCCTCATTCTTTTCAGGATTAGG
389 AGTTTGTCTCTTAAAGAAGACAAACATGAATACTCACACTAATCCCCATTCTTTTCAGGATTAGG
* *
1369425 AACCATAAACATAGTATTCTCAG
454 CACCATAAACATAGTCTTCTCAG
* * *
1369448 TAGGATACACGATGTTGATGCCTTGGTTTCAG-AACAAAGGCTTTCTTCCCACCAATTGTTGCAA
1 TAGGATACACGATATTGATGCTTTGGTTTC-GCAACAAAGGCTTTCTTCCCACCAATTGTTGTAA
* *
1369512 AGTCTAAGTTCGTGCCTAAAATGGGACAAATATGGATTCTAGTAATGATCTTCATTCTTTTTGTG
65 AGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATTCTTTTTGTG
* * ** * * * *
1369577 ATAAGGCA-TGAAAAACACATTCTCCGCAGTAGGATAAAAGATATTAATGATTTTCTTTTGCATA
130 ATAAGGCACT-ATAAACACATTCTCCGCATTAGGATAATTGACATTGATGTTTTTCTTTTGCATG
* * * * *
1369641 GAAATCTTTTCTTTCCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTAAATATGACAAGCATCG
194 GAAATCTTTTCTTTGCCCAATTATCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCG
* * ** *
1369706 ATTCTCGTAACAGTCTCTA-TGTTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCA-T----
259 ATTCTCATAACAGTCTCCACT-CCTTTCAAGATTGGGAAGCCAAAACACATTGCCTTCATTAGGA
* * * *
1369765 TACATGACATTGATGCTTTAGTGTCGCAAGAAAAGCTTTTCTTCTCGTCGTTTTTGATAGAATCA
323 TACACGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCTCATCGTTTTTGATAGAATCA
* * * *
1369830 AAGTTTGTCTTTTAAACAACACAAACATGAATAGC-CACACTAATCCCCATTCTTTTCAAGATTA
388 AAGTTTGTCTCTTAAAGAAGACAAACATGAATA-CTCACACTAATCCCCATTCTTTTCAGGATTA
*
1369894 GGCACCATAAACATAGTCTTCTCAT
452 GGCACCATAAACATAGTCTTCTCAG
** * *
1369919 TAGGATACACGA-ATTGATGCTTTGGTTTCGTGACAAAGGCTTTCTTCTCACCAATTGTGGTAAA
1 TAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTGTTGTAAA
* *
1369983 GTCTAAGTTCGTGCCTCAAATGAAACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGA
66 GTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATTCTTTTTGTGA
* * * * * * *
1370048 TAAGGAACTATAAACACATTCTTCTCATTAGAGGATAATTCACGTTGAAGATTTTCTTTTGCATG
131 TAAGGCACTATAAACACATTCTCCGCATT--AGGATAATTGACATTGATGTTTTTCTTTTGCATG
* *** * ** * * *
1370113 GAAATCTTTTCTTTACCGTGTTTTTTTTAAAATCAAAGTTCATCCCTTGAATACGATAAGCATCG
194 GAAATCTTTTCTTTGCCCAATTATCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCG
* * * * * ** * * *
1370178 ATTTTCATTACAGTCTCCATTCTTTTCAATATTGGGAAGCTGAAACATATTACCTTCGTTAGGAT
259 ATTCTCATAACAGTCTCCACTCCTTTCAAGATTGGGAAGCCAAAACACATTGCCTTCATTAGGAT
* * * * * *
1370243 ACACGACAATGATGCTTTGGTATCGCAAGAAAAGCTTTTCTTC-CTACCATTTTTTATAGAATCA
324 ACACGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCTC-ATCGTTTTTGATAGAATCA
* *
1370307 AAGTTTGTCTCTTAAAAAAGACAAACTTGAATACTCACACTAATCCCCATTCTTTTCAGGATTAG
388 AAGTTTGTCTCTTAAAGAAGACAAACATGAATACTCACACTAATCCCCATTCTTTTCAGGATTAG
* * * *
1370372 GCATCATAAACATAGTTTTCTTAT
453 GCACCATAAACATAGTCTTCTCAG
* * * *
1370396 TAGGATACACGATATTGATACTTTGGTTTTGCAACAAAGGCTTTCTTCTCACCAATTATTGTAAA
1 TAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTGTTGTAAA
* * * *
1370461 GTCTAAATTCATGCCTCAAATGAGACAAACATAGATTCTAGTAATGATCTTCATTCTTTTTGTGA
66 GTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATTCTTTTTGTGA
* *
1370526 TAAGGTACTATAAACGCATTCT
131 TAAGGCACTATAAACACATTCT
1370548 TTTCAGGATT
Statistics
Matches: 1766, Mismatches: 232, Indels: 74
0.85 0.11 0.04
Matches are distributed among these distances:
460 60 0.03
461 328 0.19
462 5 0.00
463 3 0.00
466 1 0.00
469 1 0.00
470 128 0.07
471 146 0.08
472 128 0.07
473 5 0.00
474 5 0.00
475 336 0.19
476 346 0.20
477 147 0.08
478 127 0.07
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.35
Consensus pattern (476 bp):
TAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTGTTGTAAA
GTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATTCTTTTTGTGA
TAAGGCACTATAAACACATTCTCCGCATTAGGATAATTGACATTGATGTTTTTCTTTTGCATGGA
AATCTTTTCTTTGCCCAATTATCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGAT
TCTCATAACAGTCTCCACTCCTTTCAAGATTGGGAAGCCAAAACACATTGCCTTCATTAGGATAC
ACGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCTCATCGTTTTTGATAGAATCAAAG
TTTGTCTCTTAAAGAAGACAAACATGAATACTCACACTAATCCCCATTCTTTTCAGGATTAGGCA
CCATAAACATAGTCTTCTCAG
Found at i:1369711 original size:936 final size:932
Alignment explanation
Indices: 1368055--1370547 Score: 3260
Period size: 936 Copynumber: 2.6 Consensus size: 932
1368045 TGATATAAAT
* *
1368055 GCTTTGGTTTCGCAACAAAAGCTTTCTTCCCACCAATTGTTGTAAAGTCTAAGTTCGTGCCTTAA
1 GCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTGTTGTAAAGTCTAAGTTCGTGCCTCAA
1368120 ATGAGACAAATATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATAAGGCACTATAAACACAT
66 ATGAGACAAATATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATAAGGCACTATAAACACAT
** * *
1368185 TCTCGGCATTAGGATAATTGACATTGATGTTTTTCTTTTGCTTGGAAATCTTTTGTTTGCCCAAT
131 TCTCTTCATTAGGATAATTGACATTGATGTTTTTCTTTTGCATGGAAATCTTTTCTTTGCCCAAT
* * * *
1368250 CATCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCATAATTA-TCTTTAC
196 TATCCTTAAAATGAAAGTTCATCCCTTGAATAAGATAAGCATCGATTCTCATAA-CAGTCTTCAC
* *
1368314 TCCTTTCAAGATTGGGAAGCCAAAACACATTGCGTTCATTAGGATACGCGACATTGATGCTTTGG
260 TCATTTCAAGATTGGGAAGCC-AAACACA------TC------ATACACGACATTGATGCTTTGG
* * * *
1368379 TGTCTCAAGAAAAGCATTTCTTCTCATCGTTTTTGATAGAATCAAAATTGGTCTCTTAAAGAAGA
312 TGTCTCAAGAAAAGCTTTTCTTCTTATCATTTTTTATAGAATCAAAATTGGTCTCTTAAAGAAGA
*
1368444 AAAACATGAATACTCACACTAATCCCCATTCTTTTCAGGATTAGGAACCATAAACATAGTCTTCT
377 AAAACATGAATACTCACACTAATCCCCATTCTTTTCAGGATTAGGAACCATAAACATAGTATTCT
* * * *
1368509 CCGTAGGATACACGATGTTGTTGCCTTAGTTTAAAAACAAAGGCTTTCTTCCCACCAATTGTTGC
442 CAGTAGGATACACGATGTTGATGCCTTGGTTT-AGAACAAAGGCTTTCTTCCCACCAATTGTTGC
* * * * *
1368574 AAAGTCTAACTTCGTGCCTCATATGAGATAAATATGGATTCCAGTAATGATCATCATTCTTTTTG
506 AAAGTCTAAATTCGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATTCTTTTTG
* * ** * *
1368639 TGATAAGGCACTATAAACACATTCTCCGCATTCAGATAATTGACATTGATGTTTTTCTTTTGCAT
571 TGATAAGGCACTAAAAACACATTCTCCGCAGTCAGATAAAAGACATTAATGATTTTCTTTTGCAT
* * * *
1368704 GGAAATCTTTTCTTTGCACAATTATCCTTAAAATGAAAGTTCATCCTTTGAATAAGACAAGCATA
636 AGAAATCTTTTCTTTCCACAATTATCCTTAAAATGAAAGTTCATCCCTTAAATAAGACAAGCATA
* * *
1368769 GATTCTCGTAATAGTCTCCACT-TCTTTCAAGATTGGGAAGCCAAAACACATTGCCTTCGTTGGG
701 GATTCTCGTAACAGTCTCCA-TGTCTTTCAAGATTGGGAAGCCAAAACACATTCCCTTC-AT---
* * *
1368833 ATACATGACATTGATGCTTTGGGGTCTCAAGAAATGATTTTCTTCTCGTCGTTTTTGATAGAATC
761 -TACATGACATTGATGCTTTAGGGTCGCAAGAAAAGATTTTCTTCTCGTCGTTTTTGATAGAATC
* ** * * * *
1368898 -ATGTTTGTCACTTAAATGAGACAAACATGAATA-CTCACACTAATCCCTATTCTTTTCAGGGTT
825 AAAGTTTGTCACTTAAACAACACAAACATGAATAGC-CACACTAATCCCCATTCTTTTCAAGATT
* *
1368961 AGGCACCAGAAACATAGTTTTCTCGTTAAGATACATC-ATATTGAA
889 AGGCACCAGAAACATAGTCTTCTCATTAAGATACA-CGA-ATTGAA
* * * *
1369006 GCTTTGGTTTTGCAACAGAGGCTTTCTTCCCACCAATTGTTGTAAACTCTAAGTTCGTGACTCAA
1 GCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTGTTGTAAAGTCTAAGTTCGTGCCTCAA
* *
1369071 ATGAGACAAATATGGATTCTAGTAATGATCATCATTCTTTTTATGATAAGGCACTATAAACACAT
66 ATGAGACAAATATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATAAGGCACTATAAACACAT
** * *
1369136 TCTCTTCATTAGGATAAAAGACATTGGTGTTTTTGTTTTGCATGGAAATCTTTTCTTTGCCCAAT
131 TCTCTTCATTAGGATAATTGACATTGATGTTTTTCTTTTGCATGGAAATCTTTTCTTTGCCCAAT
* *
1369201 TATCCTTAAAATGAAAATTAATCCCTTGAATAAGATAAGCATCGATTCTCATAACAGTCTTCACT
196 TATCCTTAAAATGAAAGTTCATCCCTTGAATAAGATAAGCATCGATTCTCATAACAGTCTTCACT
* *
1369266 CATTTAAAGATTGGGAAGCCAAA-ACA-CATACACGACCTTGATGCTTTGGTGTCTCAAGAAAAG
261 CATTTCAAGATTGGGAAGCCAAACACATCATACACGACATTGATGCTTTGGTGTCTCAAGAAAAG
1369329 CTTTTCTTCTTATCATTTTTTATAGAATCAAAATTGGTCTCTTAAAGAAGAAAAACATGAATACT
326 CTTTTCTTCTTATCATTTTTTATAGAATCAAAATTGGTCTCTTAAAGAAGAAAAACATGAATACT
*
1369394 CACACTAATCCTCATTCTTTTCAGGATTAGGAACCATAAACATAGTATTCTCAGTAGGATACACG
391 CACACTAATCCCCATTCTTTTCAGGATTAGGAACCATAAACATAGTATTCTCAGTAGGATACACG
*
1369459 ATGTTGATGCCTTGGTTTCAGAACAAAGGCTTTCTTCCCACCAATTGTTGCAAAGTCTAAGTTCG
456 ATGTTGATGCCTTGGTTT-AGAACAAAGGCTTTCTTCCCACCAATTGTTGCAAAGTCTAAATTCG
* *
1369524 TGCCTAAAATGGGACAAATATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATAAGGCA-TGA
520 TGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATAAGGCACT-A
*
1369588 AAAACACATTCTCCGCAGT-AGGATAAAAGATATTAATGATTTTCTTTTGCATAGAAATCTTTTC
584 AAAACACATTCTCCGCAGTCA-GATAAAAGACATTAATGATTTTCTTTTGCATAGAAATCTTTTC
* * * * *
1369652 TTTCCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTAAATATGACAAGCATCGATTCTCGTAAC
648 TTTCCACAATTATCCTTAAAATGAAAGTTCATCCCTTAAATAAGACAAGCATAGATTCTCGTAAC
* *
1369717 AGTCTCTATGTTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTACATGACATTGATGCT
713 AGTCTCCATGTCTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTACATGACATTGATGCT
* * **
1369782 TTAGTGTCGCAAGAAAAGCTTTTCTTCTCGTCGTTTTTGATAGAATCAAAGTTTGTCTTTTAAAC
778 TTAGGGTCGCAAGAAAAGATTTTCTTCTCGTCGTTTTTGATAGAATCAAAGTTTGTCACTTAAAC
*
1369847 AACACAAACATGAATAGCCACACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTC
843 AACACAAACATGAATAGCCACACTAATCCCCATTCTTTTCAAGATTAGGCACCAGAAACATAGTC
* *
1369912 TTCTCATTAGGATACACGAATTGAT
908 TTCTCATTAAGATACACGAATTGAA
** * *
1369937 GCTTTGGTTTCGTGACAAAGGCTTTCTTCTCACCAATTGTGGTAAAGTCTAAGTTCGTGCCTCAA
1 GCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTGTTGTAAAGTCTAAGTTCGTGCCTCAA
* * *
1370002 ATGAAACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATAAGGAACTATAAACACAT
66 ATGAGACAAATATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATAAGGCACTATAAACACAT
* * * * * *
1370067 TCT-TCTCATTAGAGGATAATTCACGTTGAAGATTTTCTTTTGCATGGAAATCTTTTCTTTACCG
131 TCTCT-TCATT--AGGATAATTGACATTGATGTTTTTCTTTTGCATGGAAATCTTTTCTTTGCCC
** * ** * * * * *
1370131 TGTTTTTTTTAAAATCAAAGTTCATCCCTTGAATACGATAAGCATCGATTTTCATTACAGTCTCC
193 AATTATCCTTAAAATGAAAGTTCATCCCTTGAATAAGATAAGCATCGATTCTCATAACAGTCTTC
* * * * * *
1370196 ATTCTTTTCAATATTGGGAAGCTGAAACATATTACCTTCGTTAGGATACACGACAATGATGCTTT
258 ACTCATTTCAAGATTGGGAAGC-CAAAC-----A-CATC------ATACACGACATTGATGCTTT
* * * * * * *
1370261 GGTATCGCAAGAAAAGCTTTTCTTCCTACCATTTTTTATAGAATCAAAGTTTGTCTCTTAAAAAA
310 GGTGTCTCAAGAAAAGCTTTTCTTCTTATCATTTTTTATAGAATCAAAATTGGTCTCTTAAAGAA
* * * * *
1370326 GACAAACTTGAATACTCACACTAATCCCCATTCTTTTCAGGATTAGGCATCATAAACATAGTTTT
375 GAAAAACATGAATACTCACACTAATCCCCATTCTTTTCAGGATTAGGAACCATAAACATAGTATT
* * * * * * * *
1370391 CTTATTAGGATACACGATATTGATACTTTGGTTTTGCAACAAAGGCTTTCTTCTCACCAATTATT
440 CTCAGTAGGATACACGATGTTGATGCCTTGGTTTAG-AACAAAGGCTTTCTTCCCACCAATTGTT
* * * *
1370456 GTAAAGTCTAAATTCATGCCTCAAATGAGACAAACATAGATTCTAGTAATGATCTTCATTCTTTT
504 GCAAAGTCTAAATTCGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATTCTTTT
* * *
1370521 TGTGATAAGGTACTATAAACGCATTCT
569 TGTGATAAGGCACTAAAAACACATTCT
1370548 TTTCAGGATT
Statistics
Matches: 1357, Mismatches: 158, Indels: 57
0.86 0.10 0.04
Matches are distributed among these distances:
930 1 0.00
931 190 0.14
932 84 0.06
933 114 0.08
934 3 0.00
935 4 0.00
936 424 0.31
940 1 0.00
941 1 0.00
942 2 0.00
947 1 0.00
948 270 0.20
949 4 0.00
950 4 0.00
951 254 0.19
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.35
Consensus pattern (932 bp):
GCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTGTTGTAAAGTCTAAGTTCGTGCCTCAA
ATGAGACAAATATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATAAGGCACTATAAACACAT
TCTCTTCATTAGGATAATTGACATTGATGTTTTTCTTTTGCATGGAAATCTTTTCTTTGCCCAAT
TATCCTTAAAATGAAAGTTCATCCCTTGAATAAGATAAGCATCGATTCTCATAACAGTCTTCACT
CATTTCAAGATTGGGAAGCCAAACACATCATACACGACATTGATGCTTTGGTGTCTCAAGAAAAG
CTTTTCTTCTTATCATTTTTTATAGAATCAAAATTGGTCTCTTAAAGAAGAAAAACATGAATACT
CACACTAATCCCCATTCTTTTCAGGATTAGGAACCATAAACATAGTATTCTCAGTAGGATACACG
ATGTTGATGCCTTGGTTTAGAACAAAGGCTTTCTTCCCACCAATTGTTGCAAAGTCTAAATTCGT
GCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATAAGGCACTAAA
AACACATTCTCCGCAGTCAGATAAAAGACATTAATGATTTTCTTTTGCATAGAAATCTTTTCTTT
CCACAATTATCCTTAAAATGAAAGTTCATCCCTTAAATAAGACAAGCATAGATTCTCGTAACAGT
CTCCATGTCTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTACATGACATTGATGCTTTA
GGGTCGCAAGAAAAGATTTTCTTCTCGTCGTTTTTGATAGAATCAAAGTTTGTCACTTAAACAAC
ACAAACATGAATAGCCACACTAATCCCCATTCTTTTCAAGATTAGGCACCAGAAACATAGTCTTC
TCATTAAGATACACGAATTGAA
Found at i:1370688 original size:188 final size:188
Alignment explanation
Indices: 1370354--1370718 Score: 561
Period size: 188 Copynumber: 1.9 Consensus size: 188
1370344 CACTAATCCC
* * * * *
1370354 CATTCTTTTCAGGATTAGGCATCATAAACATAGTTTTCTTATTAGGATACACGATATTGATACTT
1 CATTCTTTTCAGGATTAGGAACCATAAACATAGTTTTCTCAGTAGGATACACGATATTGATACCT
* * * *
1370419 TGGTTTTGCAACAAAGGCTTTCTTCTCACCAATTATTGTAAAGTCTAAATTCATGCCTCAAATGA
66 TGGTTTAGCAACAAAGGCTTTCTTCCCACCAATTATTGCAAAGTCTAAATTCATGCCTAAAATGA
1370484 GACAAACATAGATTCTAGTAATGATCTTCATTCTTTTTGTGATAAGGTACTATAAACG
131 GACAAACATAGATTCTAGTAATGATCTTCATTCTTTTTGTGATAAGGTACTATAAACG
* *
1370542 CATTCTTTTCAGGATTAGGAACCATAAACATAGTTTTCTCAGTAGGATACACGATGTTGATGCCT
1 CATTCTTTTCAGGATTAGGAACCATAAACATAGTTTTCTCAGTAGGATACACGATATTGATACCT
* * *
1370607 TGGTTTCAG-AACAAAGGCTTTCTTCCCACCAATTGTTGCAAAGTCTAAGTTCGTGCCTAAAATG
66 TGGTTT-AGCAACAAAGGCTTTCTTCCCACCAATTATTGCAAAGTCTAAATTCATGCCTAAAATG
* * *
1370671 GGACAAATATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATAAGG
130 AGACAAACATAGATTCTAGTAATGATCTTCATTCTTTTTGTGATAAGG
1370719 CATGAAAAAC
Statistics
Matches: 159, Mismatches: 17, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
188 158 0.99
189 1 0.01
ACGTcount: A:0.30, C:0.17, G:0.17, T:0.36
Consensus pattern (188 bp):
CATTCTTTTCAGGATTAGGAACCATAAACATAGTTTTCTCAGTAGGATACACGATATTGATACCT
TGGTTTAGCAACAAAGGCTTTCTTCCCACCAATTATTGCAAAGTCTAAATTCATGCCTAAAATGA
GACAAACATAGATTCTAGTAATGATCTTCATTCTTTTTGTGATAAGGTACTATAAACG
Found at i:1371954 original size:476 final size:474
Alignment explanation
Indices: 1370542--1373089 Score: 3088
Period size: 476 Copynumber: 5.4 Consensus size: 474
1370532 ACTATAAACG
* * * * * *
1370542 CATTCTTTTCAGGATTAGGAACCATAAACATAGTTTTCTCAGTAGGATACACGATGTTGATGCCT
1 CATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATACTT
* * *
1370607 TGGTTTCAG-AACAAAGGCTTTCTTCCCACCAATTGTTGCAAAGTCTAAGTTCGTGCCTAAAATG
66 TGGTTT-TGCAACAAAGGCTTTCTTCCCACCAATTGTTGTAAAGTCTAAGTTCGTGCCTCAAATG
* * *
1370671 GGACAAATATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATAA-GGCATGAAAAACACATTC
130 AGACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATAAGGGC-T-ATAAACACATTC
* * * * * * *
1370735 TCCGCAGTAGGATAAAAGATATTAATGATTTTCTTTTGCATAGAAATCTTTTCTTTCCCCTATTT
193 TCCTCATTAGGATAAATGACATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTT
* * * * *
1370800 TCCTTAAAATGAAAGTTCATCCCTTAAATATGACAAGCATCGATTCTCGTAACAGTCTCTATGAT
258 TCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCCTAACAGTCTCCAT-TT
* *
1370865 TTTCAAGATTGGGAAGCCAAAACACATTCCCTTCA-T----TACATGACATTGATGCTTTAGTGT
322 TTTCAAGATTGGGAAGCCAAAACACATTGCCTTCATTAGGATACATGACATTGATGCTTTGGTGT
* * * *
1370925 CGCAAGAAAAGCTTTTCTT-CTCGTCGTTTTTGATAGAATCAAAGTTTGTCTTTTAAACAACACA
387 CGCAAGAAAAGCTTTTCTTCCT-GCCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAAAAGACA
1370989 AACATGAATAGC-CACACTAATCCC
451 AACATGAATA-CTCACACTAATCCC
* *
1371013 CATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGA-ATTGATGCTT
1 CATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATACTT
* ** * *
1371077 TGGTTTCGTGACAAAGGCTTTCTTCTCACCAATTGTGGTAAAGTCTAAGTTCGTGCCTCAAATGA
66 TGGTTTTGCAACAAAGGCTTTCTTCCCACCAATTGTTGTAAAGTCTAAGTTCGTGCCTCAAATGA
* * *
1371142 AACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATAAGGAACTATAAACACATTCTT
131 GACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATAAGG-GCTATAAACACATTCTC
* * * * * * * *
1371207 CTCATTAGAGGATAATTCACGTTGAAGATTTTCTTTTGCCTGGAAATCTTTTCTTTACCGTGTTT
195 CTCATT--AGGATAAATGACATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTT
** * * * * * *
1371272 TTTTTAAAATCAAAGTTCATCCCTTGAATACGATAAGCATCGATTTTCATTACAGTCTCCATTCT
258 TCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCCTAACAGTCTCCATT-T
* ** * * * * * *
1371337 TTTCAATATTGGGAAGCTGAAACATATTACCTTCGTTAGGATACACGACAATGATGCTTTGGTAT
322 TTTCAAGATTGGGAAGCCAAAACACATTGCCTTCATTAGGATACATGACATTGATGCTTTGGTGT
* * *
1371402 CGCAAGAAAAGCTTTTCTTCCTACCATTTTTTATAGAATCAAAGTTTGTCTCTTAAAAAAGACAA
387 CGCAAGAAAAGCTTTTCTTCCTGCCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAAAAGACAA
*
1371467 ACTTGAATACTCACACTAATCCC
452 ACATGAATACTCACACTAATCCC
* * *
1371490 CATTCTTTTCAGGATTAGGCATCATAAACATAGTTTTCTTATTAGGATACACGATATTGATACTT
1 CATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATACTT
* * * *
1371555 TGGTTTTGCAACAAAGGCTTTCTTCTCACCAATTATTGTAAAGTCTAAATTCATGCCTCAAATGA
66 TGGTTTTGCAACAAAGGCTTTCTTCCCACCAATTGTTGTAAAGTCTAAGTTCGTGCCTCAAATGA
* *
1371620 GACAAACATAGATTCTAGTAATGATCTTCATTCTTTTTGTGATAAGGTGCTATAAACGCATTCTC
131 GACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATAAGG-GCTATAAACACATTCTC
*
1371685 CTCATTAGGATAAATGACATTGATGATTTTATTTTGCATGGAAATCTTTTCTTTGCCCTATTTTC
195 CTCATTAGGATAAATGACATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTC
* ** * * * *
1371750 CTTAAAATCAAAGTTCATCCCATAAATGGGACAAACATCGATTCTCGTAACCGTCTACATTCTTT
260 CTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCCTAACAGTCTCCATT-TTT
* *
1371815 TCAAGATTGGGAAGCCAAAGCACATTGCCTTCATTAGGATACATGACATTGATGCTTTGGTGTTG
324 TCAAGATTGGGAAGCCAAAACACATTGCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCG
* * * * * * * *
1371880 CAAGAGAAGATTTTCGTCCTGCCGTTTTTGATAGATTGAAACTTTGTCTCATAAATAAGACAAAC
389 CAAGAAAAGCTTTTCTTCCTGCCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAAAAGACAAAC
* *
1371945 ATTAATACTCATACTAATCCC
454 ATGAATACTCACACTAATCCC
* * * * * * *
1371966 CATTCATTTCTGGATTAGGCCCCATAGACATTGTCTTCTCATTAGGATACATGATATTGATGCTT
1 CATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATACTT
* * * *
1372031 TAGTTTCGAAACATAGGCTTTCTTCCCACCAATTGTTGTAAAGTCTAAGTTCGTGCCTCAAATGA
66 TGGTTTTGCAACAAAGGCTTTCTTCCCACCAATTGTTGTAAAGTCTAAGTTCGTGCCTCAAATGA
* * * *
1372096 GACAAACATAGATTCTACTAATGATCTTCATTCTTTTTGTGA-AAGGGCACTACAAACGCATTCT
131 GACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATAAGGG--CTATAAACACATTCT
* * ** * * *
1372160 -CTACTTTAGGATAAATGACGTTGATGATTTTCTTTTATATGAAAATCTTTTCTTTGCCCAATTA
194 CCT-CATTAGGATAAATGACATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTT
* * * *
1372224 ACCATAAAATCAAAGTTCATCCTTTGAATAAGACAAGCATCGATTCTCCT-ACAAGTCTCCATTT
258 TCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCCTAAC-AGTCTCCATTT
* * * *
1372288 TTTCCAAGATTGAGAAGCCAAAACATATTGCCTTCATTAGAATACATGACATTGATGGTTTGGTG
322 TTT-CAAGATTGGGAAGCCAAAACACATTGCCTTCATTAGGATACATGACATTGATGCTTTGGTG
* * * * ** *
1372353 TCGCAAGAGAAGCTTTTCTTCCTGCTGTTTTTTATAGAATCAAAGGTTAACTTTTAAAAAAGA-A
386 TCGCAAGAAAAGCTTTTCTTCCTGCCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAAAAGACA
*
1372417 AGACATGAATGC-C-CATCGTAATCCC
451 A-ACATGAATACTCACA-C-TAATCCC
* *
1372442 CATTC-TTTCTAGGATTAGGCACCATAAACACAGTCTTCTCATTAGGATACATGATATTGA-AGC
1 CATTCTTTTC-AGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATA-C
* * *
1372505 TTTGGTTTTGCAATAAAGGTTTTCTTCCCACCAATTGTTGTAAAGTCAAAGTTCGTGCCTCAAAT
64 TTTGGTTTTGCAACAAAGGCTTTCTTCCCACCAATTGTTGTAAAGTCTAAGTTCGTGCCTCAAAT
* * * * *
1372570 GAGACAAATATGGATTCTATTATTGATCATCATTCTTTTTGTGATAAGGCACTATAAACACATTC
129 GAGACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATAAGG-GCTATAAACACATTC
* * * * * *
1372635 TCCACATTAGGATAATTGACATTGAAGTTTTTCTTTGGCATGGAAATCTTTT-TTTGCCCAATTA
193 TCCTCATTAGGATAAATGACATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATT-
* * * *
1372699 TT-CTTAAAATGAAAGTTCATCCCATAAATAAGACAAGCTTCGATTCTCCTAACAGTGTCCATTT
257 TTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCCTAACAGTCTCCATTT
* *
1372763 TTTCCAAGATTGGGAAGCCAAAACACATTGCCTTCGTTAGGATACACGACATTGATGCTTTGGTG
322 TTT-CAAGATTGGGAAGCCAAAACACATTGCCTTCATTAGGATACATGACATTGATGCTTTGGTG
* * *** * * *
1372828 TTGCAAGAAAAGCCTTTCTTCCCATCGTTTTTGATAGAATTAAAGTTTGTCTATTAAATAAGACA
386 TCGCAAGAAAAGCTTTTCTTCCTGCCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAAAAGACA
1372893 AACATGAATACTCACACTAATCCC
451 AACATGAATACTCACACTAATCCC
** * * *
1372917 CATTCTTTTCAGGGCTAGGCACCATAAACATAGTCTTCTCGTTAGGATGCATGATATTGA-AGCT
1 CATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATA-CT
* * * * * *
1372981 TTGGTTTTGCAGCAAAGGCTCTCTTCCTACCAATTTTTGTAAAGTGTAAGTTCATGCCTCAAATG
65 TTGGTTTTGCAACAAAGGCTTTCTTCCCACCAATTGTTGTAAAGTCTAAGTTCGTGCCTCAAATG
* *
1373046 GGACAAACATGGATTCTACTAATGAT-TTCCATTCTTTTTGTGAT
130 AGACAAACATGGATTCTAGTAATGATCTT-CATTCTTTTTGTGAT
1373090 TTGGCACTAC
Statistics
Matches: 1776, Mismatches: 267, Indels: 64
0.84 0.13 0.03
Matches are distributed among these distances:
469 1 0.00
470 123 0.07
471 52 0.03
472 128 0.07
473 1 0.00
474 3 0.00
475 354 0.20
476 828 0.47
477 152 0.09
478 134 0.08
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.35
Consensus pattern (474 bp):
CATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATACTT
TGGTTTTGCAACAAAGGCTTTCTTCCCACCAATTGTTGTAAAGTCTAAGTTCGTGCCTCAAATGA
GACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATAAGGGCTATAAACACATTCTCC
TCATTAGGATAAATGACATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCC
TTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCCTAACAGTCTCCATTTTTTC
AAGATTGGGAAGCCAAAACACATTGCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCA
AGAAAAGCTTTTCTTCCTGCCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAAAAGACAAACAT
GAATACTCACACTAATCCC
Found at i:1372627 original size:158 final size:157
Alignment explanation
Indices: 1372458--1374240 Score: 572
Period size: 158 Copynumber: 11.3 Consensus size: 157
1372448 TTCTAGGATT
* *
1372458 AGGCACCATAAACACAGTCTTCTCATTAGGATACATGATATTGAAGCTTTGGTTTTGCAATAAAG
1 AGGCACCATAAACACATTCTTCTCATTAGGATACATGATATTGAAGCTTTGGTTTTGCAACAAAG
*
1372523 GTTTTCTTCCCACCAATTGTTGTAAAGTCAAAGTTCGTGCCTCAAATGAGACAAATATGGATTCT
66 GCTTTCTTCCCACCAATTGTTGTAAAGTCAAAGTTCGTGCCTCAAATGAGACAAATATGGATTCT
* *
1372588 ATTATTGATCATCATTCTTTTTGTGATA
131 A-TAATGATCTTCATTCTTTTTGTGATA
* * * * * ** * **
1372616 AGGCACTATAAACACATTCTCCACATTAGGATA-ATTGACATTGAAGTTTTTCTTTGGCATGGAA
1 AGGCACCATAAACACATTCTTCTCATTAGGATACA-TGATATTGAAGCTTTGGTTTTGCA-ACAA
* * ** * * * * * * * * *
1372680 A-TCTTTTTTTGC-CCAATTATTCTTAAAATGAAAGTTCATCCCAT-AAATAAGACAAGCT-TCG
64 AGGCTTTCTTCCCACCAATTGTT-GTAAAGTCAAAGTTCGTGCC-TCAAATGAGACAA-ATATGG
* * * * *** *
1372741 ATTCTCCTAA-CAGTGTCCATT-TTTTCCAAGATT
126 ATTCT-ATAATGA-TCTTCATTCTTTT-TGTGATA
* * * * * * * * *
1372774 GGGAAGCCA-AAACACATTGCCT-TCGTTAGGATACACGACATTGATGCTTTGGTGTTGCAAGAA
1 AGGCA-CCATAAACACATT-CTTCTCATTAGGATACATGATATTGAAGCTTTGGTTTTGCAA-CA
* * * * * * * * * *
1372837 AAGCCTTTCTTCCCATC-GTTTTTGATAGAA-TTAAAGTTTGT-CTATTAAATAAGACAAACATG
63 AAGGCTTTCTTCCCACCAATTGTTG-TA-AAGTCAAAGTTCGTGC-CTCAAATGAGACAAATATG
* * * * * ** * * *
1372899 AATACTCACACTAATCCCCATTCTTTTCAGGGCT-
125 GATTCT-ATAATGATCTTCATTCTTTT-TGTGATA
* * * * *
1372933 AGGCACCATAAACATAGTCTTCTCGTTAGGATGCATGATATTGAAGCTTTGGTTTTGCAGCAAAG
1 AGGCACCATAAACACATTCTTCTCATTAGGATACATGATATTGAAGCTTTGGTTTTGCAACAAAG
* * * ** * * *
1372998 GCTCTCTTCCTACCAATTTTTGTAAAGTGTAAGTTCATGCCTCAAATGGGACAAACATGGATTCT
66 GCTTTCTTCCCACCAATTGTTGTAAAGTCAAAGTTCGTGCCTCAAATGAGACAAATATGGATTCT
*
1373063 ACTAATGAT-TTCCATTCTTTTTGTGATT
131 A-TAATGATCTT-CATTCTTTTTGTGATA
* * * * * * * *
1373091 TGGCACTACAATCACATTTTTCTCATTAGGATATACGATATT-AATGCTTTGGTTTCGCAACAAA
1 AGGCACCATAAACACATTCTTCTCATTAGGATACATGATATTGAA-GCTTTGGTTTTGCAACAAA
* *
1373155 GGCTTTCTTCCTACCAATTGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTC
65 GGCTTTCTTCCCACCAATTGTTGTAAAGTCAAAGTTCGTGCCTCAAATGAGACAAATATGGATTC
1373220 TAGTAATGATCTTCATTCTTTTTGTGATA
130 TA-TAATGATCTTCATTCTTTTTGTGATA
* * * * * * * ** **
1373249 TGGCACTATAAACACATTCTCCGCATTAGGATA-ATTGACATTGATGTTTTTCTTTTGCATGAAA
1 AGGCACCATAAACACATTCTTCTCATTAGGATACA-TGATATTGAAGCTTTGGTTTTGCAACAAA
** ** * * ** * * * * * * *** ** *
1373313 ATCTTTTCTTTGC-CTAATTATCCTCAAAATGAAAGTGCATCCCTTAAGCAAGACAAGCAT-CAC
65 GGC-TTTCTTCCCACCAATTGTTGT-AAAGTCAAAGTTCGTGCCTCAAATGAGACAAATATGGA-
* * * *** *
1373376 TTCTCATAAT-AGTCTCCACTCCTTTCAAGATT
127 TTCT-ATAATGA-TCTTCATTCTTTTTGTGATA
* * * * * * * * * * ** *
1373408 GGGAAGCCA-AAACACTTTGCCT-TGATTTGAATACACGACT-TT-AATGCTTCGGTGTCACAAG
1 AGGCA-CCATAAACACATT-CTTCTCATTAGGATACATGA-TATTGAA-GCTTTGGTTTTGCAAC
* ** * * * * * * *
1373469 AAAAGCTTTTCTT-CCTGCTATTTTTGATAGAA-TCAAAGTTTGT-CTCTTAAATAACACAAACA
62 AAAGGC-TTTCTTCCCACCAATTGTTG-TA-AAGTCAAAGTTCGTGC-CTCAAATGAGACAAATA
* * * * * * * *
1373531 TGAATACTCACACTAATC-CCATTCTTTTCAG-GATT
123 TGGATTCT-ATAATGATCTTCATTCTTTT-TGTGATA
* * * * *
1373566 AGGCAACATAAACATAGTCTTCTCATTAGGATACACG--ATTGATGCTTTGGTTTTGCAACAAAG
1 AGGCACCATAAACACATTCTTCTCATTAGGATACATGATATTGAAGCTTTGGTTTTGCAACAAAG
* * * * **
1373629 GCTTTCTTCCCACCAATTGTTGCAAAGTCTAAGTTCGTGCCTCAAATAAGATAAACGTGGATTCT
66 GCTTTCTTCCCACCAATTGTTGTAAAGTCAAAGTTCGTGCCTCAAATGAGACAAATATGGATTCT
* *
1373694 AGTAATGATCTTCATTCATTTTCTGATA
131 A-TAATGATCTTCATTCTTTTTGTGATA
* * * ** * * * *
1373722 AGGCACTATAAACACATTCTCCTCATTAGGATAAATGGCATTGATGATTT--TTTTTCATATGGA
1 AGGCACCATAAACACATTCTTCTCATTAGGATACATGATATTGAAGCTTTGGTTTTGCA-A--CA
* ** * * * * * * * ** *
1373785 AA-TCTTTTCTTTGC-CCTATT-TTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATC
63 AAGGC-TTTCTTCCCACCAATTGTT--GTAAAGTCAAAGTTCGTGCCTCAAATGAGACAAATATG
* * ***
1373847 GATTCTCATAACCG-TCTACATTCTTTTCAAGATA
125 GATTCT-ATAA-TGATCTTCATTCTTTTTGTGATA
* * * * * * * * * * * * * *
1373881 GGGAAGC-TAAAATATATTACCT-TCATTAGGATACACGACAATGATGCTTTGGTGTCGTAAGAA
1 AGGCACCAT-AAACACATT-CTTCTCATTAGGATACATGATATTGAAGCTTTGGTTTTGCAACAA
* *** * * * * * *
1373944 AAGCTTTTCTTCCTGTC-ATTTTTGATAGAA-TCAAAGTTTGTCCCTTAAATAAGACAAACATGG
64 AGGC-TTTCTTCCCACCAATTGTTG-TA-AAGTCAAAGTTCGTGCCTCAAATGAGACAAATATGG
* * ** * ** *
1374007 ATACTCA-AACTAATCACCAATCTTTCAG-GATT
126 ATTCT-ATAA-TGATCTTCATTCTTTTTGTGATA
* * * * * *
1374039 AGGCACCATAGACATAGTCTTCTCATTAGGATACACGATATTGATGGTTTGGTTTTGCAACAAAG
1 AGGCACCATAAACACATTCTTCTCATTAGGATACATGATATTGAAGCTTTGGTTTTGCAACAAAG
* * * *
1374104 GCTTTCTTCCCACCAATTGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGATAAACATAGATTCT
66 GCTTTCTTCCCACCAATTGTTGTAAAGTCAAAGTTCGTGCCTCAAATGAGACAAATATGGATTCT
*
1374169 AGTAATGAGCTTCATTCTTTTTGTGATA
131 A-TAATGATCTTCATTCTTTTTGTGATA
* * * * *
1374197 AGGCACTATAAACACATTCTCCTCTTTAGGATAAATGACATTGA
1 AGGCACCATAAACACATTCTTCTCATTAGGATACATGATATTGA
1374241 TGATTTCCTT
Statistics
Matches: 1166, Mismatches: 372, Indels: 174
0.68 0.22 0.10
Matches are distributed among these distances:
154 3 0.00
155 40 0.03
156 78 0.07
157 85 0.07
158 542 0.46
159 385 0.33
160 30 0.03
161 3 0.00
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.35
Consensus pattern (157 bp):
AGGCACCATAAACACATTCTTCTCATTAGGATACATGATATTGAAGCTTTGGTTTTGCAACAAAG
GCTTTCTTCCCACCAATTGTTGTAAAGTCAAAGTTCGTGCCTCAAATGAGACAAATATGGATTCT
ATAATGATCTTCATTCTTTTTGTGATA
Found at i:1374241 original size:158 final size:158
Alignment explanation
Indices: 1371029--1374242 Score: 828
Period size: 159 Copynumber: 20.3 Consensus size: 158
1371019 TTTCAAGATT
* * * * * **
1371029 AGGCACCATAAACATAGTCTTCTCATTAGGATACACGA-ATTGATGCTTTGGTTTCGTGACAAAG
1 AGGCACTATAAACACATTCTCCTCATTAGGATACACGACATTGATGCTTTGGTTTTGCAACAAAG
* * *
1371093 GC-TTTCTTCTCACCAATTGTGGTAAAGTCTAAGTTCGTGCCTCAAATGAA-ACAAACATGGATT
66 GCTTTTCTTCCCACCAATTGTTGTAAAGTCAAAGTTCGTGCCTCAAAT-AAGACAAACATGGATT
1371156 CTAGTAATGATCTTCATTCTTTTTGTGATA
130 CTA-TAATGATCTTCATTCTTTTTGTGATA
* * * * * ** **
1371186 AGGAACTATAAACACATTCTTCTCATTAGAGGATA-ATTC-ACGTTGAAGATTTTCTTTTGCCTG
1 AGGCACTATAAACACATTCTCCTCATT--AGGATACA--CGACATTGATGCTTTGGTTTTG-CAA
* * * ** * * * * * ** * * *
1371249 GAAA-TCTTTTCTT--TACCGTGTTTTTTTTAAAATCAAAGTTCATCCCTTGAATACGATAAGCA
61 CAAAGGCTTTTCTTCCCACC--AATTGTTGTAAAGTCAAAGTTCGTGCCTCAAATAAGACAAACA
* * * ** *
1371311 TCGATTTTCATTACA-G-TCTCCATTCTTTTCAAT-ATT
124 TGGATTCT-A-TA-ATGATCTTCATTCTTTT-TGTGATA
* * * * * * * * * *
1371347 GGGAAGCT-GAAACATATTAC-CTTCGTTAGGATACACGACAATGATGCTTTGGTATCGCAAGAA
1 AGGCA-CTATAAACACATT-CTCCTCATTAGGATACACGACATTGATGCTTTGGTTTTGCAACAA
* * * * * * * * * *
1371410 AAGCTTTTCTTCCTACCATTTTTTATAGAA-TCAAAGTTTGT-CTCTTAAAAAAGACAAACTTGA
64 AGGCTTTTCTTCCCACCAATTGTTGTA-AAGTCAAAGTTCGTGC-CTCAAATAAGACAAACATGG
* * * * ** * *
1371473 ATACTCACACTAATCCCCATTCTTTTCAG-GATT
127 ATTCT-ATAATGATCTTCATTCTTTT-TGTGATA
* * * * *
1371506 AGGCA-TCATAAACATAGTT-TTCTTATTAGGATACACGATATTGATACTTTGGTTTTGCAACAA
1 AGGCACT-ATAAACACA-TTCTCCTCATTAGGATACACGACATTGATGCTTTGGTTTTGCAACAA
* * * * *
1371569 AGGC-TTTCTTCTCACCAATTATTGTAAAGTCTAAA-TTCATGCCTCAAATGAGACAAACATAGA
64 AGGCTTTTCTTCCCACCAATTGTTGTAAAGTC-AAAGTTCGTGCCTCAAATAAGACAAACATGGA
1371632 TTCTAGTAATGATCTTCATTCTTTTTGTGATA
128 TTCTA-TAATGATCTTCATTCTTTTTGTGATA
** * * * * ** **
1371664 AGGTGCTATAAACGCATTCTCCTCATTAGGATAAATGACATTGATGATTTTATTTTGCATGGAAA
1 AGGCACTATAAACACATTCTCCTCATTAGGATACACGACATTGATGCTTTGGTTTTGCA-ACAAA
* ** * * * * * ** *
1371729 -TCTTTTCTTTGC-CCTATT-TTCCTTAAAATCAAAGTTCATCCCAT-AAATGGGACAAACATCG
65 GGCTTTTCTTCCCACCAATTGTT--GTAAAGTCAAAGTTCGTGCC-TCAAATAAGACAAACATGG
* * * *** *
1371790 ATTCTCGTAACCG-TCTACATTCTTTTCAAGATT
127 ATTCT-ATAA-TGATCTTCATTCTTTTTGTGATA
* * * * * * * *
1371823 GGGAAGCCA-AAGCACATTGC-CTTCATTAGGATACATGACATTGATGCTTTGGTGTTGCAAGAG
1 AGGCA-CTATAAACACATT-CTCCTCATTAGGATACACGACATTGATGCTTTGGTTTTGCAACA-
* * ** * * * * * * *
1371886 AA-GATTTTCGTCCTGCC-GTTTTTGATAGATTGAAACTT--TGTCTCATAAATAAGACAAACAT
63 AAGGCTTTTCTTCCCACCAATTGTTG-TAAAGTCAAAGTTCGTGCCTC--AAATAAGACAAACAT
** * * * ** * *
1371947 TAATACTCATACTAATCCCCATTCATTTCTG-GATT
125 GGATTCT-ATAATGATCTTCATTC-TTTTTGTGATA
* * * * * * * * * * *
1371982 AGGCCCCATAGACA-TTGTCTTCTCATTAGGATACATGATATTGATGCTTTAGTTTCGAAACATA
1 AGGCACTATAAACACAT-TCTCCTCATTAGGATACACGACATTGATGCTTTGGTTTTGCAACAAA
* * *
1372046 GGC-TTTCTTCCCACCAATTGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATAGATT
65 GGCTTTTCTTCCCACCAATTGTTGTAAAGTCAAAGTTCGTGCCTCAAATAAGACAAACATGGATT
1372110 CTACTAATGATCTTCATTCTTTTTGTGA-A
130 CTA-TAATGATCTTCATTCTTTTTGTGATA
* * * * * * * ** ** **
1372139 AGGGCACTACAAACGCATTCT-CTACTTTAGGATAAATGACGTTGATGATTTTCTTTTATATGAA
1 A-GGCACTATAAACACATTCTCCT-CATTAGGATACACGACATTGATGCTTTGGTTTTGCAACAA
** ** **** * * ** * *
1372203 AATCTTTTCTTTGC-CCAATTAACCATAAAATCAAAGTTCAT-CCTTTGAATAAGACAAGCATCG
64 AGGCTTTTCTTCCCACCAATT-GTTGTAAAGTCAAAGTTCGTGCC-TCAAATAAGACAAACATGG
* * * * *
1372266 ATTCTCCTACAAG-TCTCCATT-TTTTCCAAGATTGAGA
127 ATTCT-ATA-ATGATCTTCATTCTTTT---TG--TGATA
* * * * * * * *
1372303 A-GC-C-A-AAACATATTGC-CTTCATTAGAATACATGACATTGATGGTTTGGTGTCGCAAGAGA
1 AGGCACTATAAACACATT-CTCCTCATTAGGATACACGACATTGATGCTTTGGTTTTGCAACA-A
** *** * * * * *
1372363 A-GCTTTTCTTCCTGCTGTTTTTTATAGAA-TCAAAGGTTAAC-T--TTTAAAAAAGA-AAGACA
64 AGGCTTTTCTTCCCACCAATTGTTGTA-AAGTCAAA-GTT--CGTGCCTCAAATAAGACAA-ACA
* * * ** * ** * *
1372422 TGAATGCCCATCGTAATCCCCATTCTTTCTAG-GATT
124 TGGAT-TCTATAATGATCTTCATTCTTT-TTGTGATA
* * * * * * *
1372458 AGGCACCATAAACACAGTCTTCTCATTAGGATACATGATATTGAAGCTTTGGTTTTGCAATAAAG
1 AGGCACTATAAACACATTCTCCTCATTAGGATACACGACATTGATGCTTTGGTTTTGCAACAAAG
* *
1372523 G-TTTTCTTCCCACCAATTGTTGTAAAGTCAAAGTTCGTGCCTCAAATGAGACAAATATGGATTC
66 GCTTTTCTTCCCACCAATTGTTGTAAAGTCAAAGTTCGTGCCTCAAATAAGACAAACATGGATTC
* *
1372587 TATTATTGATCATCATTCTTTTTGTGATA
131 TA-TAATGATCTTCATTCTTTTTGTGATA
* * * * ** * **
1372616 AGGCACTATAAACACATTCTCCACATTAGGATA-ATTGACATTGAAGTTTTTCTTTGGCATGGAA
1 AGGCACTATAAACACATTCTCCTCATTAGGATACA-CGACATTGATGCTTTGGTTTTGCA-ACAA
* ** * * * * * * * * *
1372680 A-TCTTTT-TTTGC-CCAATTATTCTTAAAATGAAAGTTCATCCCAT-AAATAAGACAAGCTTCG
64 AGGCTTTTCTTCCCACCAATTGTT-GTAAAGTCAAAGTTCGTGCC-TCAAATAAGACAAACATGG
* * * * *** *
1372741 ATTCTCCTAA-CAGTGTCCATT-TTTTCCAAGATT
127 ATTCT-ATAATGA-TCTTCATTCTTTT-TGTGATA
* * * * * * *
1372774 GGGAAGCCA-AAACACATTGC-CTTCGTTAGGATACACGACATTGATGCTTTGGTGTTGCAAGAA
1 AGGCA-CTATAAACACATT-CTCCTCATTAGGATACACGACATTGATGCTTTGGTTTTGCAACAA
* * * * * * * * *
1372837 AAGCCTTTCTTCCCATC-GTTTTTGATAGAA-TTAAAGTTTGT-CTATTAAATAAGACAAACATG
64 AGGCTTTTCTTCCCACCAATTGTTG-TA-AAGTCAAAGTTCGTGC-CTCAAATAAGACAAACATG
* * * * * ** * * *
1372899 AATACTCACACTAATCCCCATTCTTTTCAGGGCT-
126 GATTCT-ATAATGATCTTCATTCTTTT-TGTGATA
* * * * * * * * * *
1372933 AGGCACCATAAACATAGTCTTCTCGTTAGGATGCATGATATTGAAGCTTTGGTTTTGCAGCAAAG
1 AGGCACTATAAACACATTCTCCTCATTAGGATACACGACATTGATGCTTTGGTTTTGCAACAAAG
* * * ** * **
1372998 GC-TCTCTTCCTACCAATTTTTGTAAAGTGTAAGTTCATGCCTCAAATGGGACAAACATGGATTC
66 GCTTTTCTTCCCACCAATTGTTGTAAAGTCAAAGTTCGTGCCTCAAATAAGACAAACATGGATTC
*
1373062 TACTAATGAT-TTCCATTCTTTTTGTGATT
131 TA-TAATGATCTT-CATTCTTTTTGTGATA
* * * * * * * * *
1373091 TGGCACTACAATCACATTTTTCTCATTAGGATATACGATATTAATGCTTTGGTTTCGCAACAAAG
1 AGGCACTATAAACACATTCTCCTCATTAGGATACACGACATTGATGCTTTGGTTTTGCAACAAAG
* * * *
1373156 GC-TTTCTTCCTACCAATTGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTC
66 GCTTTTCTTCCCACCAATTGTTGTAAAGTCAAAGTTCGTGCCTCAAATAAGACAAACATGGATTC
1373220 TAGTAATGATCTTCATTCTTTTTGTGATA
131 TA-TAATGATCTTCATTCTTTTTGTGATA
* * * * ** **
1373249 TGGCACTATAAACACATTCTCCGCATTAGGATA-ATTGACATTGATGTTTTTCTTTTGCATGAAA
1 AGGCACTATAAACACATTCTCCTCATTAGGATACA-CGACATTGATGCTTTGGTTTTGCAACAAA
** ** * * ** * * * * * * ** * *
1373313 ATCTTTTCTTTGC-CTAATTATCCTCAAAATGAAAGTGCATCCCTTAAGCAAGACAAGCAT-CAC
65 GGCTTTTCTTCCCACCAATTGTTGT-AAAGTCAAAGTTCGTGCCTCAAATAAGACAAACATGGA-
* * * *** *
1373376 TTCTCATAAT-AGTCTCCACTCCTTTCAAGATT
128 TTCT-ATAATGA-TCTTCATTCTTTTTGTGATA
* * * * * * * * * * ** *
1373408 GGGAAGCCA-AAACAC-TT-TGCCTTGATTTGAATACACGACTTTAATGCTTCGGTGTCACAAGA
1 AGGCA-CTATAAACACATTCT-CC-TCATTAGGATACACGACATTGATGCTTTGGTTTTGCAACA
* ** * * * * *
1373470 AAAGCTTTTCTT-CCTGCTATTTTTGATAGAA-TCAAAGTTTGT-CTCTTAAATAACACAAACAT
63 AAGGCTTTTCTTCCCACCAATTGTTG-TA-AAGTCAAAGTTCGTGC-CTCAAATAAGACAAACAT
* * * * * * * *
1373532 GAATACTCACACTAATC-CCATTCTTTTCAG-GATT
125 GGATTCT-ATAATGATCTTCATTCTTTT-TGTGATA
* * *
1373566 AGGCAAC-ATAAACATAGTCTTCTCATTAGGATACACG--ATTGATGCTTTGGTTTTGCAACAAA
1 AGGC-ACTATAAACACATTCTCCTCATTAGGATACACGACATTGATGCTTTGGTTTTGCAACAAA
* * * *
1373628 GGC-TTTCTTCCCACCAATTGTTGCAAAGTCTAAGTTCGTGCCTCAAATAAGATAAACGTGGATT
65 GGCTTTTCTTCCCACCAATTGTTGTAAAGTCAAAGTTCGTGCCTCAAATAAGACAAACATGGATT
* *
1373692 CTAGTAATGATCTTCATTCATTTTCTGATA
130 CTA-TAATGATCTTCATTCTTTTTGTGATA
* * * * * *
1373722 AGGCACTATAAACACATTCTCCTCATTAGGATAAATGGCATTGATGATTT--TTTTTCATATGGA
1 AGGCACTATAAACACATTCTCCTCATTAGGATACACGACATTGATGCTTTGGTTTTGCA-A--CA
* ** * * * * * * * *
1373785 AA-TCTTTTCTTTGC-CCTATT-TTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATC
63 AAGGCTTTTCTTCCCACCAATTGTT--GTAAAGTCAAAGTTCGTGCCTCAAATAAGACAAACATG
* * ***
1373847 GATTCTCATAACCG-TCTACATTCTTTTCAAGATA
126 GATTCT-ATAA-TGATCTTCATTCTTTTTGTGATA
* * * * * * * * * *
1373881 GGGAAGCTA-AAATATATTAC-CTTCATTAGGATACACGACAATGATGCTTTGGTGTCGTAAGAA
1 AGGCA-CTATAAACACATT-CTCCTCATTAGGATACACGACATTGATGCTTTGGTTTTGCAACAA
* *** * * * *
1373944 AAGCTTTTCTTCCTGTC-ATTTTTGATAGAA-TCAAAGTTTGTCCCTTAAATAAGACAAACATGG
64 AGGCTTTTCTTCCCACCAATTGTTG-TA-AAGTCAAAGTTCGTGCCTCAAATAAGACAAACATGG
* * ** * ** *
1374007 ATACTCA-AACTAATCACCAATCTTTCAG-GATT
127 ATTCT-ATAA-TGATCTTCATTCTTTTTGTGATA
* * * * * * *
1374039 AGGCACCATAGACATAGTCTTCTCATTAGGATACACGATATTGATGGTTTGGTTTTGCAACAAAG
1 AGGCACTATAAACACATTCTCCTCATTAGGATACACGACATTGATGCTTTGGTTTTGCAACAAAG
* * * *
1374104 GC-TTTCTTCCCACCAATTGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGATAAACATAGATTC
66 GCTTTTCTTCCCACCAATTGTTGTAAAGTCAAAGTTCGTGCCTCAAATAAGACAAACATGGATTC
*
1374168 TAGTAATGAGCTTCATTCTTTTTGTGATA
131 TA-TAATGATCTTCATTCTTTTTGTGATA
* * *
1374197 AGGCACTATAAACACATTCTCCTCTTTAGGATAAATGACATTGATG
1 AGGCACTATAAACACATTCTCCTCATTAGGATACACGACATTGATG
1374243 ATTTCCTTTT
Statistics
Matches: 2174, Mismatches: 695, Indels: 375
0.67 0.21 0.12
Matches are distributed among these distances:
154 3 0.00
155 46 0.02
156 83 0.04
157 138 0.06
158 822 0.38
159 893 0.41
160 89 0.04
161 83 0.04
162 11 0.01
163 4 0.00
164 2 0.00
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.35
Consensus pattern (158 bp):
AGGCACTATAAACACATTCTCCTCATTAGGATACACGACATTGATGCTTTGGTTTTGCAACAAAG
GCTTTTCTTCCCACCAATTGTTGTAAAGTCAAAGTTCGTGCCTCAAATAAGACAAACATGGATTC
TATAATGATCTTCATTCTTTTTGTGATA
Found at i:1374321 original size:475 final size:471
Alignment explanation
Indices: 1373110--1374598 Score: 1986
Period size: 473 Copynumber: 3.1 Consensus size: 471
1373100 AATCACATTT
* * *
1373110 TTCTCATTAGGATATACGATATTAATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCTACCAATTG
1 TTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTG
* *
1373175 TTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATTCTT
66 TTGTAAAGTCTAAGTTCGTGCCTCAAATGAGATAAACATGGATTCTAGTAATGATCTTCATTCTT
* * * *
1373240 TTTGTGATATGGCACTATAAACACATTCTCCGCATTAGGATAATTGACATTGATGTTTTTCTTTT
131 TTTGTGATAAGGCACTATAAACACATTCTCCTCATTAGGATAAATGACATTGATG-ATTTCTTTT
* * * * * * **
1373305 GCATGAAAATCTTTTCTTTGCCTAATTATCCTCAAAATGAAAGTGCATCCCTTAAGCAAGACAAG
195 GCATGGAAATCTTTTCTTTGCCT-ATTTTCAT-AAAATCAAAGTTCATCCCCTAAATAAGACAAG
* * * * *
1373370 CATCACTTCTCATAATAGTCTCCACTCCTTTCAAGATTGGGAAGCCAAAACACT-TTGCCTTGAT
258 CATCA-TTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACA-TATTACCTTCAT
* * * * * *
1373434 TTGAATACACGACTTTAATGCTTCGGTGTCACAAGAAAAGCTTTTCTTCCTG-CTATTTTTGATA
321 TAGAATACACGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTCCTGTCGATTTTTGATA
*
1373498 GAATCAAAGTTTGTCTCTTAAATAACACAAACATGAATACTCACACTAATCCCATTCTTTTCAGG
386 GAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCACACTAATCCCATTC-TTTCAGG
*
1373563 ATTAGGCAACATAAACATAGTC
450 ATTAGGCACCATAAACATAGTC
*
1373585 TTCTCATTAGGATACACG--ATTGATGCTTTGGTTTTGCAACAAAGGCTTTCTTCCCACCAATTG
1 TTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTG
* * * *
1373648 TTGCAAAGTCTAAGTTCGTGCCTCAAATAAGATAAACGTGGATTCTAGTAATGATCTTCATTCAT
66 TTGTAAAGTCTAAGTTCGTGCCTCAAATGAGATAAACATGGATTCTAGTAATGATCTTCATTCTT
* * *
1373713 TTTCTGATAAGGCACTATAAACACATTCTCCTCATTAGGATAAATGGCATTGATGATTT-TTTTT
131 TTTGTGATAAGGCACTATAAACACATTCTCCTCATTAGGATAAATGACATTGATGATTTCTTTTG
* *
1373777 CATATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAA
196 C--ATGGAAATCTTTTCTTTG-CCTATTTT-CATAAAATCAAAGTTCATCCCCTAAATAAGACAA
* * * * *
1373842 GCATCGATTCTCATAACCGTCTACATTCTTTTCAAGATAGGGAAGCTAAAATATATTACCTTCAT
257 GCATC-ATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACATATTACCTTCAT
* * *
1373907 TAGGATACACGACAATGATGCTTTGGTGTCGTAAGAAAAGCTTTTCTTCCTGTC-ATTTTTGATA
321 TAGAATACACGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTCCTGTCGATTTTTGATA
* * * *
1373971 GAATCAAAGTTTGTCCCTTAAATAAGACAAACATGGATACTCAAACTAATCACCAATCTTTCAGG
386 GAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCACACTAATC-CCATTCTTTCAGG
*
1374036 ATTAGGCACCATAGACATAGTC
450 ATTAGGCACCATAAACATAGTC
* *
1374058 TTCTCATTAGGATACACGATATTGATGGTTTGGTTTTGCAACAAAGGCTTTCTTCCCACCAATTG
1 TTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTG
* *
1374123 TTGTAAAGTCTAAGTTCGTGCCTCAAATGAGATAAACATAGATTCTAGTAATGAGCTTCATTCTT
66 TTGTAAAGTCTAAGTTCGTGCCTCAAATGAGATAAACATGGATTCTAGTAATGATCTTCATTCTT
*
1374188 TTTGTGATAAGGCACTATAAACACATTCTCCTCTTTAGGATAAATGACATTGATGATTTCCTTTT
131 TTTGTGATAAGGCACTATAAACACATTCTCCTCATTAGGATAAATGACATTGATGATTT-CTTTT
* * * * * *
1374253 GCATGGAATTCTTTTTTTTGTCATATTTTGCATAAAATCAAAGTTCATCCCCTGAATACGATAAG
195 GCATGGAAATCTTTTCTTTG-CCTATTTT-CATAAAATCAAAGTTCATCCCCTAAATAAGACAAG
* * *
1374318 CATCAATTTTCATTACAGTCTCCATTCTTTTCAAGATTGGGAAGCCGAAACATATTACCTTCATT
258 CATC-ATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACATATTACCTTCATT
* * * * * * * *
1374383 AGAATACATGACATTGATGCTTTAGTTTTGCGAGAAAAGCTTTCCTT-CTCGTCGTTTTTTTATA
322 AGAATACACGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTCCT-GTCGATTTTTGATA
* * * * *
1374447 GAATCAAAGTTTCTCTTTTAAACAAGACAAACATGAATAGC-CACACTAATCCCCATTGTTTTTA
386 GAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATA-CTCACACTAAT-CCCATT-CTTTCA
1374511 GGATTAGGCACCATAAACATAGTC
448 GGATTAGGCACCATAAACATAGTC
* * * *
1374535 TTCTCATTAGAATACACGATATTGATGCTTTGGTTTCACGACAAAGGCTTTCTTCTCACCAATT
1 TTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATT
1374599 CTGACAAACA
Statistics
Matches: 891, Mismatches: 106, Indels: 32
0.87 0.10 0.03
Matches are distributed among these distances:
471 5 0.01
472 4 0.00
473 396 0.44
474 14 0.02
475 326 0.37
476 54 0.06
477 92 0.10
ACGTcount: A:0.31, C:0.20, G:0.14, T:0.35
Consensus pattern (471 bp):
TTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTG
TTGTAAAGTCTAAGTTCGTGCCTCAAATGAGATAAACATGGATTCTAGTAATGATCTTCATTCTT
TTTGTGATAAGGCACTATAAACACATTCTCCTCATTAGGATAAATGACATTGATGATTTCTTTTG
CATGGAAATCTTTTCTTTGCCTATTTTCATAAAATCAAAGTTCATCCCCTAAATAAGACAAGCAT
CATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACATATTACCTTCATTAGAA
TACACGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTCCTGTCGATTTTTGATAGAATC
AAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCACACTAATCCCATTCTTTCAGGATTAGG
CACCATAAACATAGTC
Found at i:1376138 original size:159 final size:158
Alignment explanation
Indices: 1374688--1377787 Score: 810
Period size: 158 Copynumber: 19.6 Consensus size: 158
1374678 AAATAAGACA
* * * * * *
1374688 CATTCTTTTCAAGATTGGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGGTT
1 CATTCTTTTCAAGATTAGGCACCATAAACATATTCCT-TCATTAGGATACATGACATTGATGCTT
* * * * * * ** * *
1374753 TGCTTTTGCAACAAAGGC-TTTCTTCCCA-CCAATTGTTG-TA-AAGTCTAAGTTCATGCCTCAA
65 TGGTTTTGCAAGAAAAGCTTTTCTT-CCAGTC-ATTTTTGATAGAA-TCAAAGTTTGTCCCTTAA
* * * * * *
1374814 ATGAGATAAACATGGATTCT-AGTAATGATCTT
127 ATAAGACAAACATGGATACTCA-TACTAATCTC
*** * * * * ** * * * *
1374846 CATTCTTTTTGTGATAAGGCACTATAAACACATTCTCCTGTTTAGGAAAAATGACAGTGATGATT
1 CATTCTTTTCAAGATTAGGCACCATAAACATATTC-CTTCATTAGGATACATGACATTGATGCTT
** * * * * * * * ** *
1374911 TTCTTTTGCATGGAAATCTTTTCTT--TGTCGTATTTTGCTTAAAATCAAAGTTCATCCCCTAAA
65 TGGTTTTGCAAGAAAAGCTTTTCTTCCAGTCAT-TTTTG-ATAGAATCAAAGTTTGTCCCTTAAA
* * * * ** *
1374974 TACGATAAGCATCGATTTTCATTAC-AGTCTC
128 TAAGACAAACATGGATACTCA-TACTAATCTC
* * * * *
1375005 CATTCTTTTCAAGATTGGGAAGC-TGAAACATATTACCTTCATTAGAATACACGACATTGATGCT
1 CATTCTTTTCAAGATTAGGCACCAT-AAACATATT-CCTTCATTAGGATACATGACATTGATGCT
* * * * **
1375069 TTAGTGTTGCAAGAAAAGCTTTTCTTCTCA-CCATTTTTTATAGAATCAAAGTTTGTCTTTTAAA
64 TTGGTTTTGCAAGAAAAGCTTTTCTTC-CAGTCATTTTTGATAGAATCAAAGTTTGTCCCTTAAA
* * *
1375133 CAAGACAAACATGAATAGC-CACACTAATC-C
128 TAAGACAAACATGGATA-CTCATACTAATCTC
* * * *
1375163 CATTATTTTCAGGATTAGGCACCATAAACATA-T-C-TCATTAGAATACATGATATTGATGCTTT
1 CATTCTTTTCAAGATTAGGCACCATAAACATATTCCTTCATTAGGATACATGACATTGATGCTTT
* * * * * * * ** * *
1375225 GG-TTT-CACGACAAAGGTTTTCTTCTCA-CCAATTCTGGTA-AAGTCTAAGTTCAT-GCTTCCA
66 GGTTTTGCAAGA-AAAGCTTTTCTTC-CAGTCATTTTTGATAGAA-TCAAAGTTTGTCCCTT-AA
* * * * *
1375285 ATGAGACAAACATGGATTCT-AGTAATGATCTT
127 ATAAGACAAACATGGATACTCA-TACTAATCTC
*** * * * * * *
1375317 CATTCTTTTTGTGATAAGGCACTATAAACACATTCTCCTCATTAGGATAAATGACATTGATGTTT
1 CATTCTTTTCAAGATTAGGCACCATAAACATATTC-CTTCATTAGGATACATGACATTGATGCTT
** * * *** * **
1375382 TTCTTTTGCATAG-AAATCTTTTCTTTGCC-CT-ATTTTCCTTAAAATCAAAGTTCATCCCTTAA
65 TGGTTTTGCA-AGAAAAGCTTTTC-TT-CCAGTCATTTTTGATAGAATCAAAGTTTGTCCCTTAA
* * * * **
1375444 GTAAGAC-AAGATCGATTCTCATAAC-CGTCTC
127 ATAAGACAAACATGGATACTCAT-ACTAATCTC
* * * * * * * *
1375475 CATTCTTTTTAAGATAAGGAAGCCA-AAATATATTACCTTTATTAGGATACACGATAATGATGCT
1 CATTCTTTTCAAGATTAGGCA-CCATAAACATATT-CCTTCATTAGGATACATGACATTGATGCT
* * * *
1375539 TTGGTGTCGCAAGAAAAGCTTTTCTT-CATGTCGTTTTTGATAGAATAAAAGTTTGTCCCTTAAA
64 TTGGTTTTGCAAGAAAAGCTTTTCTTCCA-GTCATTTTTGATAGAATCAAAGTTTGTCCCTTAAA
*
1375603 TAAGACAAACATGGATACTCAAACTAATC-C
128 TAAGACAAACATGGATACTCATACTAATCTC
* * * * * *
1375633 CTAATC-TTTCAGGATTAGGCACCATAGACATATTCTTCTCATTAGGATACACGATATTGATGCT
1 C-ATTCTTTTCAAGATTAGGCACCATAAACATATTCCT-TCATTAGGATACATGACATTGATGCT
* * * * * * * ** * *
1375697 TTGGTCTTGCAACAATAGC-TTTCTTCCCA-CCAATTGTTG-TA-AAGTCTATGTTCATGCCTAA
64 TTGGTTTTGCAAGAAAAGCTTTTCTT-CCAGTC-ATTTTTGATAGAA-TCAAAGTTTGTCCCTTA
* * *
1375758 AATGAGAAAAACATGGAT--T-ATACTTATGATCTT
126 AATAAGACAAACATGGATACTCATAC-TA--ATCTC
*** * * * * *
1375791 CATTCTTTTTGTGATAAGGCACTATAAACACATTCTCCTCATTAGGATA-ATTGACATTGATGAT
1 CATTCTTTTCAAGATTAGGCACCATAAACATATTC-CTTCATTAGGATACA-TGACATTGATGCT
** ** * * * * *** * * *** *
1375855 TTTCTTTTGCGTGGAAATG-ATTTCTTTGCTGT-ATTTTCCTTAAAATAAAAGTTCACCCCTTGA
64 TTGGTTTTGC-AAGAAAAGCTTTTC-TTCCAGTCATTTTTGATAGAATCAAAGTTTGTCCCTTAA
* * * * ** *
1375918 ATACGATAAGCATAGATTTTCATTAC-AGTCTC
127 ATAAGACAAACATGGATACTCA-TACTAATCTC
* * * * *
1375950 CATTCTTTTCAAGATTGGGAAGCC-GAAACATATTACCTTCGTTAGGATACATGACAATGATGCT
1 CATTCTTTTCAAGATTAGGCA-CCATAAACATATT-CCTTCATTAGGATACATGACATTGATGCT
* ** * *
1376014 TTGGTGTTGCAAGAAATTCTTTTCTTCCAGTCATTTTTGATAGAATAAAAGTTTGTCTCTTAAAT
64 TTGGTTTTGCAAGAAAAGCTTTTCTTCCAGTCATTTTTGATAGAATCAAAGTTTGTCCCTTAAAT
* *
1376079 AAGACAAACATGGATACTCACACTAATCCC
129 AAGACAAACATGGATACTCATACTAATCTC
* * * *
1376109 CATTCTTTTCAAGATTAGGCACCATAAACATAGTTTTCTT-ATTAGGATACACGATATTGATACT
1 CATTCTTTTCAAGATTAGGCACCATAAACATA--TTCCTTCATTAGGATACATGACATTGATGCT
* * * * * * * *
1376173 TTGGTTTTGCAACAAAGGC-TTTCTTCTCA-CCAATTGTTG-TA-AAGTCTAAGTTCGTACCTCA
64 TTGGTTTTGCAAGAAAAGCTTTTCTTC-CAGTC-ATTTTTGATAGAA-TCAAAGTTTGTCCCTTA
* * * * * * *
1376234 AATGAGATAAACGTGGATTCT-AGTAATGATCTT
126 AATAAGACAAACATGGATACTCA-TACTAATCTC
*** * * * * * * *
1376267 CATTCTTTTTGTGATAAGGCACTATAAACACATTTTCTTCTTTAGGATAAATGACATTGATGATT
1 CATTCTTTTCAAGATTAGGCACCATAAACATA-TTCCTTCATTAGGATACATGACATTGATGCTT
** * * * * *** * * **
1376332 TTCTTTTGCATGGAAATCTTTTCTT--TGCTCTATTTTCCTTAAAATCAAAGCTCATCCCTTAAA
65 TGGTTTTGCAAGAAAAGCTTTTCTTCCAG-TC-ATTTTTGATAGAATCAAAGTTTGTCCCTTAAA
* * * **
1376395 TAAGACAAACATCGATTCTCGTAAC-CGTCTC
128 TAAGACAAACATGGATACTCAT-ACTAATCTC
* * * * * * *
1376426 CATTCTTTTCAAGATTGGGAAGCCA-AAGCACATTGCCTTTATTAGGATACTTGACGTTGATGCT
1 CATTCTTTTCAAGATTAGGCA-CCATAAACATATT-CCTTCATTAGGATACATGACATTGATGCT
* * * * * * *
1376490 TTGGTGTTGCAAGAGAAGATTTT-TGTCCCGTCATTTTTGATAGATTTAAAGTTTGTCTCTTAAA
64 TTGGTTTTGCAAGAAAAGCTTTTCT-TCCAGTCATTTTTGATAGAATCAAAGTTTGTCCCTTAAA
** *
1376554 TAAGACAAACATTAATACTCATACTAATCCC
128 TAAGACAAACATGGATACTCATACTAATCTC
* * * * * * * *
1376585 CATTCTTTTCAGGATTAGGCCCCATAGACATAGTCTTCTCGTTAGGATACACGATATTGATGCTT
1 CATTCTTTTCAAGATTAGGCACCATAAACATATTCCT-TCATTAGGATACATGACATTGATGCTT
* * * * * * * * * * *
1376650 TAGTTTTGCAA-CAAAGGTTTTCTTCCCACTAATTGTTG-TA-AGGTCTAAGGTTGTGCCTCAAA
65 TGGTTTTGCAAGAAAAGCTTTTCTT-CCAGTCATTTTTGATAGA-ATCAAAGTTTGTCCCTTAAA
* * *
1376712 TGATG-CAATA-ATGGAT--TC-TAGTAATCACC
128 T-AAGACAA-ACATGGATACTCATACTAATC-TC
**** * * * ** **
1376741 ATCATTCTTTTTGTTATAAGGCACTATAAACACATTCTCCGCATTAGGATATTTGACATTGATGC
1 --CATTCTTTTCAAGATTAGGCACCATAAACATATTC-CTTCATTAGGATACATGACATTGATGC
** * * * * * ** *
1376806 TTTTCTTTTACATGGAAATCTTTTCTTTGCCTAAAT-ATCCTT-A-A-AATCAAAGTTTATCCCT
63 TTTGGTTTTGCAAGAAAAGCTTTTC-TT-CC--AGTCATTTTTGATAGAATCAAAGTTTGTCCCT
* * * * * *
1376867 TGAATAAGACAAGCATCGATTCTCCTAAC-AGTCTC
124 TAAATAAGACAAACATGGATACTCAT-ACTAATCTC
* * ** *
1376902 CATT-TTGTTCAAG-TTGGGAAGCCA-AAACGCATTGCCTTCATTAGGATACACGACATTGATGC
1 CATTCTT-TTCAAGATTAGGCA-CCATAAACATATT-CCTTCATTAGGATACATGACATTGATGC
* * ** * * * * *
1376964 TTTAGTGTCACAAGAAAAGCTTTTCTTCTC-GCCGTTTTTTATAGAATCTAAGTTTGTCTCTTAA
63 TTTGGTTTTGCAAGAAAAGCTTTTCTTC-CAGTCATTTTTGATAGAATCAAAGTTTGTCCCTTAA
* ** *
1377028 ATAAGACTAACATAAATACTCACACTAATCTC
127 ATAAGACAAACATGGATACTCATACTAATCTC
* * * * * * * * *
1377060 TATTTTTTTCAGGGTTAGGCACCATAAATATAGTCTTCTCATTAGGATACATGATATTGAAGCTT
1 CATTCTTTTCAAGATTAGGCACCATAAACATATTCCT-TCATTAGGATACATGACATTGATGCTT
* * * * * * *
1377125 TGGTTTCGC-AGAAAAGGC-TTTCTTCCCA-CCAATTGTT-ATA-AAGTCCAAGTTCGTGCCTCA
65 TGGTTTTGCAAGAAAA-GCTTTTCTT-CCAGTC-ATTTTTGATAGAA-TCAAAGTTTGTCCCTTA
* * * * * * *
1377185 AATGAGACAAATATGGATTCT-ACTAATGATTTT
126 AATAAGACAAACATGGATACTCA-TACTAATCTC
** * * * * * * *
1377218 CATTCTCTTT-GTGATTTGGCACTATAAACACATTTTCC-TCTTTAGGATGCATGATATTAATGC
1 CATTCT-TTTCAAGATTAGGCACCAT-AA-ACATATTCCTTCATTAGGATACATGACATTGATGC
* * * * * **
1377281 TTTGGTTTCGCAACAAAGGC-TTTCTTCCCA-CCAATTGTTG-TA-AAGTTTAAGTTCATG-CCC
63 TTTGGTTTTGCAAGAAAAGCTTTTCTT-CCAGTC-ATTTTTGATAGAA-TCAAAGTT--TGTCCC
* * * * * * ** * *
1377341 -CAAATGAGATAAATATGGATTCT-AGTAATGGTTTT
123 TTAAATAAGACAAACATGGATACTCA-TACTAATCTC
*** * * * * * * *
1377376 CATTCTTTTTGTGATAAGGCACTATAAACAGAATCTCC-TCATTAGGATAAAAAGACATTGAAGT
1 CATTCTTTTCAAGATTAGGCACCATAAACA-TAT-TCCTTCATTAGGAT-ACATGACATTGATGC
** * * * * * *** * * ** *
1377440 TTTTCTTTTGCATGGAAATCTTTTCTTTCC-CTTATTTTCCTTAAAATGAAAGTTCATCCCTTGA
63 TTTGGTTTTGCAAGAAAAGCTTTTC-TTCCAGTCATTTTTGATAGAATCAAAGTTTGTCCCTTAA
* * * * * *
1377504 ATAAGACAAGCATCGATTCTCCTAAC-AGTCCC
127 ATAAGACAAACATGGATACTCAT-ACTAATCTC
* * * * *
1377536 CATTCTTTTCAAGATTGGGAAGCCA-AAACACATTCCCTTCGTTAGGATACATGACATTGATGGT
1 CATTCTTTTCAAGATTAGGCA-CCATAAACATATT-CCTTCATTAGGATACATGACATTGATGCT
* * * * *
1377600 TTGGTGTCGCAAGAAAAGCTTTTCTTCTC-GTCGTTTTTGATAGAATCAACA--TTGGCTGCTTA
64 TTGGTTTTGCAAGAAAAGCTTTTCTTC-CAGTCATTTTTGATAGAATCAA-AGTTTGTC-CCTTA
* * * *
1377662 AATAAGGCCAACAT-GATTACTCACACTAATCCC
126 AATAAGACAAACATGGA-TACTCATACTAATCTC
* * * * *
1377695 CATTCCTTTCAGGATTAGGCACCATAAACAT-TGTCTTCTCATTAGGATACATGATATTGATGAT
1 CATTCTTTTCAAGATTAGGCACCATAAACATAT-TCCT-TCATTAGGATACATGACATTGATGCT
* * *
1377759 GTGGTTTCGCAACACAAAGGC-TTTCTTCC
64 TTGGTTTTGCAAGA-AAA-GCTTTTCTTCC
1377788 CACCAATTGT
Statistics
Matches: 2105, Mismatches: 668, Indels: 337
0.68 0.21 0.11
Matches are distributed among these distances:
152 10 0.00
153 53 0.03
154 55 0.03
155 16 0.01
156 12 0.01
157 85 0.04
158 862 0.41
159 854 0.41
160 122 0.06
161 25 0.01
162 7 0.00
163 4 0.00
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.36
Consensus pattern (158 bp):
CATTCTTTTCAAGATTAGGCACCATAAACATATTCCTTCATTAGGATACATGACATTGATGCTTT
GGTTTTGCAAGAAAAGCTTTTCTTCCAGTCATTTTTGATAGAATCAAAGTTTGTCCCTTAAATAA
GACAAACATGGATACTCATACTAATCTC
Found at i:1376314 original size:476 final size:476
Alignment explanation
Indices: 1374688--1377265 Score: 3380
Period size: 476 Copynumber: 5.4 Consensus size: 476
1374678 AAATAAGACA
* * *
1374688 CATTCTTTTCAAGATTGGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGGTT
1 CATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTT
*
1374753 TGCTTTTGCAACAAAGGCTTTCTTCCCACCAATTGTTGTAAAGTCTAAGTTCATGCCTCAAATGA
66 TGGTTTTGCAACAAAGGCTTTCTTCCCACCAATTGTTGTAAAGTCTAAGTTCATGCCTCAAATGA
*
1374818 GATAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATAAGGCACTATAAACACATTCTC
131 GACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATAAGGCACTATAAACACATTCTC
** * *
1374883 CTGTTTAGGAAAAATGACAGTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTG-TCGTATTTT
196 CTCATTAGGATAAATGACATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCTC-TATTTT
* * * * * *
1374947 GCTTAAAATCAAAGTTCATCCCCTAAATACGATAAGCATCGATTTTCATTACAGTCTCCATTCTT
260 CCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAGTCTCCATTCTT
** * *
1375012 TTCAAGATTGGGAAGCTGAAACATATTACCTTCATTAGAATACACGACATTGATGCTTTAGTGTT
325 TTCAAGATTGGGAAGCCAAAACATATTACCTTCATTAGGATACACGACATTGATGCTTTGGTGTT
* * * * *
1375077 GCAAGAAAAGCTTTTCTTCTCA-CCATTTTTTATAGAATCAAAGTTTGTCTTTTAAACAAGACAA
390 GCAAGAAAAGCTTTTCTTC-CAGTCATTTTTGATAGAATAAAAGTTTGTCTCTTAAATAAGACAA
1375141 ACATGAATAGC-CACACTAAT-CC
454 ACATGAATA-CTCACACTAATCCC
* * *
1375163 CATTATTTTCAGGATTAGGCACCATAAACATA----TCTCATTAGAATACATGATATTGATGCTT
1 CATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTT
** * * * * * * *
1375224 TGGTTTCACGACAAAGGTTTTCTTCTCACCAATTCTGGTAAAGTCTAAGTTCATGCTTCCAATGA
66 TGGTTTTGCAACAAAGGCTTTCTTCCCACCAATTGTTGTAAAGTCTAAGTTCATGCCTCAAATGA
1375289 GACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATAAGGCACTATAAACACATTCTC
131 GACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATAAGGCACTATAAACACATTCTC
* * *
1375354 CTCATTAGGATAAATGACATTGATGTTTTTCTTTTGCATAGAAATCTTTTCTTTGCCCTATTTTC
196 CTCATTAGGATAAATGACATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCTCTATTTTC
* *
1375419 CTTAAAATCAAAGTTCATCCCTTAAGTAAGACAAG-ATCGATTCTCATAACCGTCTCCATTCTTT
261 CTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAGTCTCCATTCTTT
* ** * * * * *
1375483 TTAAGATAAGGAAGCCAAAATATATTACCTTTATTAGGATACACGATAATGATGCTTTGGTGTCG
326 TCAAGATTGGGAAGCCAAAACATATTACCTTCATTAGGATACACGACATTGATGCTTTGGTGTTG
* *
1375548 CAAGAAAAGCTTTTCTT-CATGTCGTTTTTGATAGAATAAAAGTTTGTCCCTTAAATAAGACAAA
391 CAAGAAAAGCTTTTCTTCCA-GTCATTTTTGATAGAATAAAAGTTTGTCTCTTAAATAAGACAAA
* *
1375612 CATGGATACTCAAACTAATCCC
455 CATGAATACTCACACTAATCCC
* * * *
1375634 TAATC-TTTCAGGATTAGGCACCATAGACATATTCTTCTCATTAGGATACACGATATTGATGCTT
1 CATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTT
* * *
1375698 TGGTCTTGCAACAATA-GCTTTCTTCCCACCAATTGTTGTAAAGTCTATGTTCATGCCTAAAATG
66 TGGTTTTGCAACAA-AGGCTTTCTTCCCACCAATTGTTGTAAAGTCTAAGTTCATGCCTCAAATG
* * * *
1375762 AGAAAAACATGGATTATACTTATGATCTTCATTCTTTTTGTGATAAGGCACTATAAACACATTCT
130 AGACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATAAGGCACTATAAACACATTCT
* * ** *
1375827 CCTCATTAGGATAATTGACATTGATGATTTTCTTTTGCGTGGAAATGATTTCTTTGCTGTATTTT
195 CCTCATTAGGATAAATGACATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCTCTATTTT
* * * * * * * *
1375892 CCTTAAAATAAAAGTTCACCCCTTGAATACGATAAGCATAGATTTTCATTACAGTCTCCATTCTT
260 CCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAGTCTCCATTCTT
* * * *
1375957 TTCAAGATTGGGAAGCCGAAACATATTACCTTCGTTAGGATACATGACAATGATGCTTTGGTGTT
325 TTCAAGATTGGGAAGCCAAAACATATTACCTTCATTAGGATACACGACATTGATGCTTTGGTGTT
**
1376022 GCAAGAAATTCTTTTCTTCCAGTCATTTTTGATAGAATAAAAGTTTGTCTCTTAAATAAGACAAA
390 GCAAGAAAAGCTTTTCTTCCAGTCATTTTTGATAGAATAAAAGTTTGTCTCTTAAATAAGACAAA
*
1376087 CATGGATACTCACACTAATCCC
455 CATGAATACTCACACTAATCCC
* * * *
1376109 CATTCTTTTCAAGATTAGGCACCATAAACATAGTTTTCTTATTAGGATACACGATATTGATACTT
1 CATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTT
* * *
1376174 TGGTTTTGCAACAAAGGCTTTCTTCTCACCAATTGTTGTAAAGTCTAAGTTCGTACCTCAAATGA
66 TGGTTTTGCAACAAAGGCTTTCTTCCCACCAATTGTTGTAAAGTCTAAGTTCATGCCTCAAATGA
* * *
1376239 GATAAACGTGGATTCTAGTAATGATCTTCATTCTTTTTGTGATAAGGCACTATAAACACATTTTC
131 GACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATAAGGCACTATAAACACATTCTC
* *
1376304 TTCTTTAGGATAAATGACATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCTCTATTTTC
196 CTCATTAGGATAAATGACATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCTCTATTTTC
* * * *
1376369 CTTAAAATCAAAGCTCATCCCTTAAATAAGACAAACATCGATTCTCGTAACCGTCTCCATTCTTT
261 CTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAGTCTCCATTCTTT
* * * * ** *
1376434 TCAAGATTGGGAAGCCAAAGCACATTGCCTTTATTAGGATACTTGACGTTGATGCTTTGGTGTTG
326 TCAAGATTGGGAAGCCAAAACATATTACCTTCATTAGGATACACGACATTGATGCTTTGGTGTTG
* * * * *
1376499 CAAGAGAAGATTTT-TGTCCCGTCATTTTTGATAGATTTAAAGTTTGTCTCTTAAATAAGACAAA
391 CAAGAAAAGCTTTTCT-TCCAGTCATTTTTGATAGAATAAAAGTTTGTCTCTTAAATAAGACAAA
* *
1376563 CATTAATACTCATACTAATCCC
455 CATGAATACTCACACTAATCCC
* * *
1376585 CATTCTTTTCAGGATTAGGCCCCATAGACATAGTCTTCTCGTTAGGATACACGATATTGATGCTT
1 CATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTT
* * * * *
1376650 TAGTTTTGCAACAAAGGTTTTCTTCCCACTAATTGTTGTAAGGTCTAAGGTT-GTGCCTCAAATG
66 TGGTTTTGCAACAAAGGCTTTCTTCCCACCAATTGTTGTAAAGTCTAA-GTTCATGCCTCAAATG
* * * *
1376714 ATG-CAATA-ATGGATTCTAGTAATCACCATCATTCTTTTTGTTATAAGGCACTATAAACACATT
130 A-GACAA-ACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATAAGGCACTATAAACACATT
* ** * * *
1376777 CTCCGCATTAGGATATTTGACATTGATGCTTTTCTTTTACATGGAAATCTTTTCTTTGC-CTAAA
193 CTCCTCATTAGGATAAATGACATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCTCT-AT
* * * *
1376841 TATCCTTAAAATCAAAGTTTATCCCTTGAATAAGACAAGCATCGATTCTCCTAACAGTCTCCATT
257 TTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAGTCTCCATT
** * *
1376906 -TTGTTCAAG-TTGGGAAGCCAAAACGCATTGCCTTCATTAGGATACACGACATTGATGCTTTAG
322 CTT-TTCAAGATTGGGAAGCCAAAACATATTACCTTCATTAGGATACACGACATTGATGCTTTGG
** * * * **
1376969 TGTCACAAGAAAAGCTTTTCTTCTC-GCCGTTTTTTATAGAATCTAAGTTTGTCTCTTAAATAAG
386 TGTTGCAAGAAAAGCTTTTCTTC-CAGTCATTTTTGATAGAATAAAAGTTTGTCTCTTAAATAAG
* * *
1377033 ACTAACATAAATACTCACACTAATCTC
450 ACAAACATGAATACTCACACTAATCCC
* * * * * *
1377060 TATTTTTTTCAGGGTTAGGCACCATAAATATAGTCTTCTCATTAGGATACATGATATTGAAGCTT
1 CATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTT
* * * *
1377125 TGGTTTCGCAGA-AAAGGCTTTCTTCCCACCAATTGTTATAAAGTCCAAGTTCGTGCCTCAAATG
66 TGGTTTTGCA-ACAAAGGCTTTCTTCCCACCAATTGTTGTAAAGTCTAAGTTCATGCCTCAAATG
* * * * ** *
1377189 AGACAAATATGGATTCTACTAATGATTTTCATTCTCTTTGTGATTTGGCACTATAAACACATTTT
130 AGACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATAAGGCACTATAAACACATTCT
*
1377254 CCTCTTTAGGAT
195 CCTCATTAGGAT
1377266 GCATGATATT
Statistics
Matches: 1827, Mismatches: 250, Indels: 52
0.86 0.12 0.02
Matches are distributed among these distances:
468 2 0.00
469 1 0.00
470 172 0.09
471 235 0.13
472 1 0.00
474 230 0.13
475 485 0.27
476 696 0.38
477 5 0.00
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.36
Consensus pattern (476 bp):
CATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTT
TGGTTTTGCAACAAAGGCTTTCTTCCCACCAATTGTTGTAAAGTCTAAGTTCATGCCTCAAATGA
GACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATAAGGCACTATAAACACATTCTC
CTCATTAGGATAAATGACATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCTCTATTTTC
CTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAGTCTCCATTCTTT
TCAAGATTGGGAAGCCAAAACATATTACCTTCATTAGGATACACGACATTGATGCTTTGGTGTTG
CAAGAAAAGCTTTTCTTCCAGTCATTTTTGATAGAATAAAAGTTTGTCTCTTAAATAAGACAAAC
ATGAATACTCACACTAATCCC
Found at i:1377721 original size:635 final size:635
Alignment explanation
Indices: 1376626--1377843 Score: 1730
Period size: 635 Copynumber: 1.9 Consensus size: 635
1376616 AGTCTTCTCG
* * * *
1376626 TTAGGATACACGATATTGATGCTTTAGTTTTGCAACAAAGGTTTTCTTCCCACTAATTGTTGTAA
1 TTAGGATACACGATATTAATGCTTTAGTTTCGCAACAAAGGCTTTCTTCCCACCAATTGTTGTAA
* * * * *
1376691 GGTCTAAGGTTGTGCCTCAAATGATGCAATAATGGATTCTAGTAATCACCATCATTCTTTTTGTT
66 AGTCTAAGGTTATGCCCCAAATGATGAAATAATGGATTCTAGTAATCACCATCATTCTTTTTGTG
* *** *
1376756 ATAAGGCACTATAAACACATTCTCCGCATTAGGATATTTGACATTGATGCTTTTCTTTTACATGG
131 ATAAGGCACTATAAACACAATCTCCGCATTAGGATAAAAGACATTGAAGCTTTTCTTTTACATGG
* *
1376821 AAATCTTTTCTTTGCCTAAATATCCTTAAAATCAAAGTTTATCCCTTGAATAAGACAAGCATCGA
196 AAATCTTTTCTTTCCCTAAATATCCTTAAAATCAAAGTTCATCCCTTGAATAAGACAAGCATCGA
* * *
1376886 TTCTCCTAACAGTCTCCATTTTGTTCAAGTTGGGAAGCCAAAACGCATTGCCTTCATTAGGATAC
261 TTCTCCTAACAGTCCCCATTTTGTTCAAGTTGGGAAGCCAAAACACATTCCCTTCATTAGGATAC
* *
1376951 ACGACATTGATGCTTTAGTGTCACAAGAAAAGCTTTTCTTCTCGCCGTTTTTTATAGAATCTAAG
326 ACGACATTGATGCTTTAGTGTCACAAGAAAAGCTTTTCTTCTCGCCGTTTTTGATAGAATCTAAC
* * * * * ** *
1377016 TTTGTCTCTTAAATAAGACTAACATAAATACTCACACTAATCTCTATTTTTTTCAGGGTTAGGCA
391 ATTGGCTCTTAAATAAGACCAACATAAATACTCACACTAATCCCCATTCCTTTCAGGATTAGGCA
* * * *
1377081 CCATAAATATAGTCTTCTCATTAGGATACATGATATTGAAGCTTTGGTTTCGC-AGA-AAAGGCT
456 CCATAAACATAGTCTTCTCATTAGGATACATGATATTGAAGATGTGGTTTCGCAACACAAAGGCT
* * *
1377144 TTCTTCCCACCAATTGTTATAAAGTCCAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTACT
521 TTCTTCCCACCAATTGTTATAAAGTCCAAGTTAGTACCTCAAATGAGACAAACATGGATTCTACT
1377209 AATGATTTTCATTCTCTTTGTGATTTGGCACTATAAACACATTTTCCTCT
586 AATGATTTTCATTCTCTTTGTGATTTGGCACTATAAACACATTTTCCTCT
* * *
1377259 TTAGGATGCATGATATTAATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTGTTGTAA
1 TTAGGATACACGATATTAATGCTTTAGTTTCGCAACAAAGGCTTTCTTCCCACCAATTGTTGTAA
* *****
1377324 AGTTTAA-GTTCATGCCCCAAATGA-GATAA-ATATGGATTCTAGTAATGGTTTTCATTCTTTTT
66 AGTCTAAGGTT-ATGCCCCAAATGATGA-AATA-ATGGATTCTAGTAATCACCATCATTCTTTTT
* * * *
1377386 GTGATAAGGCACTATAAACAGAATCTCCTCATTAGGATAAAAAGACATTGAAGTTTTTCTTTTGC
128 GTGATAAGGCACTATAAACACAATCTCCGCATTAGGAT-AAAAGACATTGAAGCTTTTCTTTTAC
* * * *
1377451 ATGGAAATCTTTTCTTTCCCTTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCA
192 ATGGAAATCTTTTCTTTCCCTAAATATCCTTAAAATCAAAGTTCATCCCTTGAATAAGACAAGCA
*
1377516 TCGATTCTCCTAACAGTCCCCATTCTT-TTCAAGATTGGGAAGCCAAAACACATTCCCTTCGTTA
257 TCGATTCTCCTAACAGTCCCCATT-TTGTTCAAG-TTGGGAAGCCAAAACACATTCCCTTCATTA
* * * * *
1377580 GGATACATGACATTGATGGTTTGGTGTCGCAAGAAAAGCTTTTCTTCTCGTCGTTTTTGATAGAA
320 GGATACACGACATTGATGCTTTAGTGTCACAAGAAAAGCTTTTCTTCTCGCCGTTTTTGATAGAA
* * *
1377645 TC-AACATTGGCTGCTTAAATAAGGCCAACATGATTACTCACACTAATCCCCATTCCTTTCAGGA
385 TCTAACATTGGCT-CTTAAATAAGACCAACATAAATACTCACACTAATCCCCATTCCTTTCAGGA
* *
1377709 TTAGGCACCATAAACATTGTCTTCTCATTAGGATACATGATATTGATGATGTGGTTTCGCAACAC
449 TTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGATATTGAAGATGTGGTTTCGCAACAC
* *
1377774 AAAGGCTTTCTTCCCACCAATTGTTGTAAAGTCTAAGTTAGTACCTCAAATGAGACAAACATGGA
514 AAAGGCTTTCTTCCCACCAATTGTTATAAAGTCCAAGTTAGTACCTCAAATGAGACAAACATGGA
1377839 TTCTA
579 TTCTA
1377844 GAAATGATCG
Statistics
Matches: 510, Mismatches: 66, Indels: 14
0.86 0.11 0.02
Matches are distributed among these distances:
632 5 0.01
633 136 0.27
634 115 0.23
635 187 0.37
636 2 0.00
637 65 0.13
ACGTcount: A:0.30, C:0.19, G:0.16, T:0.35
Consensus pattern (635 bp):
TTAGGATACACGATATTAATGCTTTAGTTTCGCAACAAAGGCTTTCTTCCCACCAATTGTTGTAA
AGTCTAAGGTTATGCCCCAAATGATGAAATAATGGATTCTAGTAATCACCATCATTCTTTTTGTG
ATAAGGCACTATAAACACAATCTCCGCATTAGGATAAAAGACATTGAAGCTTTTCTTTTACATGG
AAATCTTTTCTTTCCCTAAATATCCTTAAAATCAAAGTTCATCCCTTGAATAAGACAAGCATCGA
TTCTCCTAACAGTCCCCATTTTGTTCAAGTTGGGAAGCCAAAACACATTCCCTTCATTAGGATAC
ACGACATTGATGCTTTAGTGTCACAAGAAAAGCTTTTCTTCTCGCCGTTTTTGATAGAATCTAAC
ATTGGCTCTTAAATAAGACCAACATAAATACTCACACTAATCCCCATTCCTTTCAGGATTAGGCA
CCATAAACATAGTCTTCTCATTAGGATACATGATATTGAAGATGTGGTTTCGCAACACAAAGGCT
TTCTTCCCACCAATTGTTATAAAGTCCAAGTTAGTACCTCAAATGAGACAAACATGGATTCTACT
AATGATTTTCATTCTCTTTGTGATTTGGCACTATAAACACATTTTCCTCT
Found at i:1379068 original size:12 final size:11
Alignment explanation
Indices: 1379049--1379124 Score: 70
Period size: 12 Copynumber: 6.9 Consensus size: 11
1379039 AGAGAAAGAA
1379049 GAGATAGGAGG
1 GAGATAGGAGG
1379060 GATGATAGGAGG
1 GA-GATAGGAGG
1379072 AGAGATAGGA--
1 -GAGATAGGAGG
*
1379082 GAGATAGTA--
1 GAGATAGGAGG
*
1379091 GAGATAGAAGG
1 GAGATAGGAGG
1379102 GATGATAGGAGG
1 GA-GATAGGAGG
1379114 AGAGATAGGAG
1 -GAGATAGGAG
1379125 AGATAATAGA
Statistics
Matches: 56, Mismatches: 3, Indels: 11
0.80 0.04 0.16
Matches are distributed among these distances:
9 16 0.29
11 4 0.07
12 32 0.57
13 4 0.07
ACGTcount: A:0.41, C:0.00, G:0.46, T:0.13
Consensus pattern (11 bp):
GAGATAGGAGG
Found at i:1379083 original size:9 final size:9
Alignment explanation
Indices: 1379069--1379129 Score: 56
Period size: 9 Copynumber: 7.1 Consensus size: 9
1379059 GGATGATAGG
1379069 AGGAGAGAT
1 AGGAGAGAT
1379078 AGGAGAGAT
1 AGGAGAGAT
*
1379087 AGTAGAGAT
1 AGGAGAGAT
* *
1379096 AGAAGGGAT
1 AGGAGAGAT
* *
1379105 --GATAG-G
1 AGGAGAGAT
1379111 AGGAGAGAT
1 AGGAGAGAT
1379120 AGGAGAGAT
1 AGGAGAGAT
1379129 A
1 A
1379130 ATAGAGAGAG
Statistics
Matches: 40, Mismatches: 9, Indels: 6
0.73 0.16 0.11
Matches are distributed among these distances:
7 2 0.05
8 4 0.10
9 34 0.85
ACGTcount: A:0.44, C:0.00, G:0.43, T:0.13
Consensus pattern (9 bp):
AGGAGAGAT
Found at i:1379103 original size:42 final size:42
Alignment explanation
Indices: 1379039--1379157 Score: 175
Period size: 42 Copynumber: 2.8 Consensus size: 42
1379029 TAGCCCTCAA
* *
1379039 AGAGAAAGAAGAGATAGGAGGGATGATAGGAGGAGAGATAGG
1 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGATAGG
*
1379081 AGAGATAGTAGAGATAGAAGGGATGATAGGAGGAGAGATAGG
1 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGATAGG
* * * *
1379123 AGAGATAATAGAGAGAGGAGGAATGACAGGAGGAG
1 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAG
1379158 GAAAGAAGAA
Statistics
Matches: 69, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 69 1.00
ACGTcount: A:0.45, C:0.01, G:0.44, T:0.11
Consensus pattern (42 bp):
AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGATAGG
Found at i:1380745 original size:710 final size:710
Alignment explanation
Indices: 1379386--1382206 Score: 5356
Period size: 710 Copynumber: 4.0 Consensus size: 710
1379376 AAAAAGACAG
* ** *
1379386 AAGAAGTTTTGATGAGCAGCCCTTAGCCACATGGGATGAAATGAAGAACCTAATGCATAGAAGAT
1 AAGAAGTTTTGATGAGCAACCCGCAGCCACATGGGATGAAATGAAGAACCTAATGCACAGAAGAT
1379451 TTGTTCCTACCTACTACAATAGGGAGCTTCATACAAAGCTTCAAGGTTTGAGGCAAGGTGGAAAA
66 TTGTTCCTACCTACTACAATAGGGAGCTTCATACAAAGCTTCAAGGTTTGAGGCAAGGTGGAAAA
* *
1379516 AATGTCGATGACTATTACAAAGAAATGGAAGTTGCCATGATAAGAGCCAATGTAATTGAAGAAAG
131 AGTGTCGATGACTATTACAAAAAAATGGAAGTTGCCATGATAAGAGCCAATGTAATTGAAGAAAG
*
1379581 AGAAGCAACAATGGCTCGTTTCTTGAATGGGTTGAATCATGATATCCGTGACATAGTGGAACTCC
196 AGAAGCAACAATGGCCCGTTTCTTGAATGGGTTGAATCATGATATCCGTGACATAGTGGAACTCC
1379646 ATCCCCATGTAGAACTTGAAGATTTGGTTCACCAAGCTATCAAAGTCGAAGCACAACTCAAAAGA
261 ATCCCCATGTAGAACTTGAAGATTTGGTTCACCAAGCTATCAAAGTCGAAGCACAACTCAAAAGA
1379711 AAGGGGACTTTGAAGAAAAGCACCACTTCTTACAACTCTAAAGGATGGAAGGAAGGAGTGAAGAA
326 AAGGGGACTTTGAAGAAAAGCACCACTTCTTACAACTCTAAAGGATGGAAGGAAGGAGTGAAGAA
*
1379776 AGAGGGAACTTCAGCTATGGATGCGGCTGTCCAAAGTAGTAAATCCTCAACTAAGTCTTCTTTTA
391 GGAGGGAACTTCAGCTATGGATGCGGCTGTCCAAAGTAGTAAATCCTCAACTAAGTCTTCTTTTA
1379841 ATTCTACTAATCCTTCTACTTCTAGGCATAGGGAAATCAAATGCTTCAAATGCCTTGGAAAGGGT
456 ATTCTACTAATCCTTCTACTTCTAGGCATAGGGAAATCAAATGCTTCAAATGCCTTGGAAAGGGT
*
1379906 CACATTGCATCCCAATGTCCTAACAAGAAGACGATGATTTTAAGGGAGAATGGTGAGGTCTCTAG
521 CACATTGCATCCCAATGTCCTAACAAGAAGACCATGATTTTAAGGGAGAATGGTGAGGTCTCTAG
1379971 TGCAACTTCATCTCCATCATTAGATGCTTCAAGTGAAGAAGATAACGAGTGTGAGGCTTTATGCC
586 TGCAACTTCATCTCCATCATTAGATGCTTCAAGTGAAGAAGATAACGAGTGTGAGGCTTTATGCC
1380036 ACGAGGGAGACTTGCTTATGGTGAGGCGTCTCTTGGGTAGCATATGAAGAACCTAATGAA
651 ACGAGGGAGACTTGCTTATGGTGAGGCGTCTCTTGGGTAGCATATGAAGAACCTAATGAA
*
1380096 AAGAAGTTTTGATGAGCAACCCGCAGCCACACGGGATGAAATGAAGAACCTAATGCACAGAAGAT
1 AAGAAGTTTTGATGAGCAACCCGCAGCCACATGGGATGAAATGAAGAACCTAATGCACAGAAGAT
*
1380161 TTGTTCCTACCTACTACAATAGGGAGCTTCATACAAAGCTTTAAGGTTTGAGGCAAGGTGGAAAA
66 TTGTTCCTACCTACTACAATAGGGAGCTTCATACAAAGCTTCAAGGTTTGAGGCAAGGTGGAAAA
1380226 AGTGTCGATGACTATTACAAAAAAATGGAAGTTGCCATGATAAGAGCCAATGTAATTGAAGAAAG
131 AGTGTCGATGACTATTACAAAAAAATGGAAGTTGCCATGATAAGAGCCAATGTAATTGAAGAAAG
1380291 AGAAGCAACAATGGCCCGTTTCTTGAATGGGTTGAATCATGATATCCGTGACATAGTGGAACTCC
196 AGAAGCAACAATGGCCCGTTTCTTGAATGGGTTGAATCATGATATCCGTGACATAGTGGAACTCC
1380356 ATCCCCATGTAGAACTTGAAGATTTGGTTCACCAAGCTATCAAAGTCGAAGCACAACTCAAAAGA
261 ATCCCCATGTAGAACTTGAAGATTTGGTTCACCAAGCTATCAAAGTCGAAGCACAACTCAAAAGA
1380421 AAGGGGACTTTGAAGAAAAGCACCACTTCTTACAACTCTAAAGGATGGAAGGAAGGAGTGAAGAA
326 AAGGGGACTTTGAAGAAAAGCACCACTTCTTACAACTCTAAAGGATGGAAGGAAGGAGTGAAGAA
* *
1380486 GGAGGGAACTTCAGCTATGGATACGGCTGTCCAAAGTAGGAAATCCTCAACTAAGTCTTCTTTTA
391 GGAGGGAACTTCAGCTATGGATGCGGCTGTCCAAAGTAGTAAATCCTCAACTAAGTCTTCTTTTA
*
1380551 ATTCTACTAATCCTTCTACTTCTAGGCATAGGGAAATCAAATGCTTCAAATACCTTGGAAAGGGT
456 ATTCTACTAATCCTTCTACTTCTAGGCATAGGGAAATCAAATGCTTCAAATGCCTTGGAAAGGGT
1380616 CACATTGCATCCCAATGTCCTAACAAGAAGACCATGATTTTAAGGGAGAATGGTGAGGTCTCTAG
521 CACATTGCATCCCAATGTCCTAACAAGAAGACCATGATTTTAAGGGAGAATGGTGAGGTCTCTAG
1380681 TGCAACTTCATCTCCATCATTAGATGCTTCAAGTGAAGAAGATAACGAGTGTGAGGCTTTATGCC
586 TGCAACTTCATCTCCATCATTAGATGCTTCAAGTGAAGAAGATAACGAGTGTGAGGCTTTATGCC
1380746 ACGAGGGAGACTTGCTTATGGTGAGGCGTCTCTTGGGTAGCATATGAAGAACCTAATGAA
651 ACGAGGGAGACTTGCTTATGGTGAGGCGTCTCTTGGGTAGCATATGAAGAACCTAATGAA
*
1380806 AAGAAGTTTTGATGAGCAACCCGCAGCCACATGGGATGAAATGAAGAACCTAATGCACAAAAGAT
1 AAGAAGTTTTGATGAGCAACCCGCAGCCACATGGGATGAAATGAAGAACCTAATGCACAGAAGAT
* *
1380871 TTGTTCCTACCTACTATAATAGGGAGCTTCATACAAAGCTTTAAGGTTTGAGGCAAGGTGGAAAA
66 TTGTTCCTACCTACTACAATAGGGAGCTTCATACAAAGCTTCAAGGTTTGAGGCAAGGTGGAAAA
* *
1380936 AGTGTCGATGACAATTACAAAGAAATGGAAGTTGCCATGATAAGAGCCAATGTAATTGAAGAAAG
131 AGTGTCGATGACTATTACAAAAAAATGGAAGTTGCCATGATAAGAGCCAATGTAATTGAAGAAAG
1381001 AGAAGCAACAATGGCCCGTTTCTTGAATGGGTTGAATCATGATATCCGTGACATAGTGGAACTCC
196 AGAAGCAACAATGGCCCGTTTCTTGAATGGGTTGAATCATGATATCCGTGACATAGTGGAACTCC
*
1381066 ATCCCCATGTAAAACTTGAAGATTTGGTTCACCAAGCTATCAAAGTCGAAGCACAACTCAAAAGA
261 ATCCCCATGTAGAACTTGAAGATTTGGTTCACCAAGCTATCAAAGTCGAAGCACAACTCAAAAGA
*
1381131 AAGGGGACTTTGAAGAAAAGCACCACTTCTTACAACTCTAAATGATGGAAGGAAGGAGTGAAGAA
326 AAGGGGACTTTGAAGAAAAGCACCACTTCTTACAACTCTAAAGGATGGAAGGAAGGAGTGAAGAA
1381196 GGAGGGAACTTCAGCTATGGATGCGGCTGTCCAAAGTAGTAAATCCTCAACTAAGTCTTCTTTTA
391 GGAGGGAACTTCAGCTATGGATGCGGCTGTCCAAAGTAGTAAATCCTCAACTAAGTCTTCTTTTA
1381261 ATTCTACTAATCCTTCTACTTCTAGGCATAGGGAAATCAAATGCTTCAAATGCCTTGGAAAGGGT
456 ATTCTACTAATCCTTCTACTTCTAGGCATAGGGAAATCAAATGCTTCAAATGCCTTGGAAAGGGT
1381326 CACATTGCATCCCAATGTCCTAACAAGAAGACCATGATTTTAAGGGAGAATGGTGAGGTCTCTAG
521 CACATTGCATCCCAATGTCCTAACAAGAAGACCATGATTTTAAGGGAGAATGGTGAGGTCTCTAG
*
1381391 TGCAACTTCATCTCCATCATTAGATGCTTCAAGTGAAGAAGATAGCGAGTGTGAGGCTTTATGCC
586 TGCAACTTCATCTCCATCATTAGATGCTTCAAGTGAAGAAGATAACGAGTGTGAGGCTTTATGCC
1381456 ACGAGGGAGACTTGCTTATGGTGAGGCGTCTCTTGGGTAGCATATGAAGAACCTAATGAA
651 ACGAGGGAGACTTGCTTATGGTGAGGCGTCTCTTGGGTAGCATATGAAGAACCTAATGAA
* *
1381516 AAGAAGTTTTGATGAGCAGCCCGTAGCCACATGGGATGAAATGAAGAACCTAATGCACAGAAGAT
1 AAGAAGTTTTGATGAGCAACCCGCAGCCACATGGGATGAAATGAAGAACCTAATGCACAGAAGAT
*
1381581 TTGTTCCTACCTACTACAATAGGGAGCTTCATACAAAACTTCAAGGTTTGAGGCAAGGTGGAAAA
66 TTGTTCCTACCTACTACAATAGGGAGCTTCATACAAAGCTTCAAGGTTTGAGGCAAGGTGGAAAA
1381646 AGTGTCGATGACTATTACAAAGAAAA-GGAAGTTGCCATGATAAGAGCCAATGTAATTGAAGAAA
131 AGTGTCGATGACTATTACAAA-AAAATGGAAGTTGCCATGATAAGAGCCAATGTAATTGAAGAAA
* * *
1381710 GAGAAGCAACAATGGCTCGTTTCTTGAATAGGTTGAATCATGATATCTGTGACATAGTGGAACTC
195 GAGAAGCAACAATGGCCCGTTTCTTGAATGGGTTGAATCATGATATCCGTGACATAGTGGAACTC
1381775 CATCCCCATGTAGAACTTGAAGATTTGGTTCACCAAGCTATCAAAGTCGAAGCACAACTCAAAAG
260 CATCCCCATGTAGAACTTGAAGATTTGGTTCACCAAGCTATCAAAGTCGAAGCACAACTCAAAAG
1381840 AAAGGGGACTTTGAAGAAAAGCACCACTTCTTACAACTCTAAAGGATGGAAGGAAGGAGTGAAGA
325 AAAGGGGACTTTGAAGAAAAGCACCACTTCTTACAACTCTAAAGGATGGAAGGAAGGAGTGAAGA
1381905 AGGAGGGAACTTCAGCTATGGATGCGGCTGTCCAAAGTAGTAAATCCTCAACTAAGTCTTCTTTT
390 AGGAGGGAACTTCAGCTATGGATGCGGCTGTCCAAAGTAGTAAATCCTCAACTAAGTCTTCTTTT
*
1381970 AATTCTACTAATCCTTCTACTTCTAGGCATAGAGAAATCAAATGCTTCAAATGCCTTGGAAAGGG
455 AATTCTACTAATCCTTCTACTTCTAGGCATAGGGAAATCAAATGCTTCAAATGCCTTGGAAAGGG
1382035 TCACATTGCATCCCAATGTCCTAACAAGAAGACCATGATTTTAAGGGAGAATGGTGAGGTCTCTA
520 TCACATTGCATCCCAATGTCCTAACAAGAAGACCATGATTTTAAGGGAGAATGGTGAGGTCTCTA
*
1382100 GTGCAACTTCATCTCCATCATTAGATGCTTCAAGTGAAGAAGATAGCGAGTGTGAGGCTTTATGC
585 GTGCAACTTCATCTCCATCATTAGATGCTTCAAGTGAAGAAGATAACGAGTGTGAGGCTTTATGC
1382165 CACGAGGGAGACTTGCTTATGGTGAGGCGTCTCTTGGGTAGC
650 CACGAGGGAGACTTGCTTATGGTGAGGCGTCTCTTGGGTAGC
1382207 TTAGCCAAGG
Statistics
Matches: 2071, Mismatches: 39, Indels: 2
0.98 0.02 0.00
Matches are distributed among these distances:
710 2068 1.00
711 3 0.00
ACGTcount: A:0.34, C:0.18, G:0.23, T:0.25
Consensus pattern (710 bp):
AAGAAGTTTTGATGAGCAACCCGCAGCCACATGGGATGAAATGAAGAACCTAATGCACAGAAGAT
TTGTTCCTACCTACTACAATAGGGAGCTTCATACAAAGCTTCAAGGTTTGAGGCAAGGTGGAAAA
AGTGTCGATGACTATTACAAAAAAATGGAAGTTGCCATGATAAGAGCCAATGTAATTGAAGAAAG
AGAAGCAACAATGGCCCGTTTCTTGAATGGGTTGAATCATGATATCCGTGACATAGTGGAACTCC
ATCCCCATGTAGAACTTGAAGATTTGGTTCACCAAGCTATCAAAGTCGAAGCACAACTCAAAAGA
AAGGGGACTTTGAAGAAAAGCACCACTTCTTACAACTCTAAAGGATGGAAGGAAGGAGTGAAGAA
GGAGGGAACTTCAGCTATGGATGCGGCTGTCCAAAGTAGTAAATCCTCAACTAAGTCTTCTTTTA
ATTCTACTAATCCTTCTACTTCTAGGCATAGGGAAATCAAATGCTTCAAATGCCTTGGAAAGGGT
CACATTGCATCCCAATGTCCTAACAAGAAGACCATGATTTTAAGGGAGAATGGTGAGGTCTCTAG
TGCAACTTCATCTCCATCATTAGATGCTTCAAGTGAAGAAGATAACGAGTGTGAGGCTTTATGCC
ACGAGGGAGACTTGCTTATGGTGAGGCGTCTCTTGGGTAGCATATGAAGAACCTAATGAA
Found at i:1388170 original size:475 final size:474
Alignment explanation
Indices: 1386527--1388170 Score: 2087
Period size: 475 Copynumber: 3.5 Consensus size: 474
1386517 AAATAAGACA
* * *
1386527 CATTCTTTTCAAGATTGGGCACCATAAACATAGTCTTCTCGTTAGGATACACGATATTGATGCTT
1 CATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGAAGCTT
* * *
1386592 TG-TTTTGCAACACAGGCTTTCTTCCCACCAATTGTTGAAAAGTCTAAGTTCGTGCCT-AGAATG
66 TGATTTCGCAACAAAGGCTTTCTTCCCACCAATTGTTGTAAAGTCTAAGTTCGTGCCTCA-AATG
*
1386655 AGACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATAAGGCACTATAAACACATTCT
130 AGACAAACATGGATTCTACTAATGATCTTCATTCTTTTTGTGATAAGGCACTATAAACACATTCT
* * * * *
1386720 CCTCATTAGGATAAATGATAATGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTA-TTT
195 CCTCATTAGGATAAATGACATTAATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCC-AGTTA
* * * * * *
1386784 TCCTTAAAATCAAAGTTTATCCCTTAAATAAGACAAACATCAATTCTCATAACCGTCTCCATTCT
259 TCCTTAAAATCAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCCTAACAGTCTCCATTCT
* * * ** * **
1386849 TTACAAGATTGGGAAGCCAAAGCACATTTCCTTTATTAGGATACATGATGTTGATGCTTTAGTGT
324 TTTCAAGATTGGGAAGCCAAAACACATTGCCTTCGTTAGGATACACGACATTGATGCTTT-GTGT
* * * * * * *
1386914 TGCAAGAGAAGATTTTCATCCCGTCGTTTTTGATAGATTCAAAGTTTGTCTCTTAAATAAGACAA
388 CGCAAGAAAAGCTTTTC-TTCCGCCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAA
* *
1386979 ACATTAATACTCATACTAATCC-C
452 ACATGAATACTCACACTAA-CCTC
* * * *
1387002 CATTCTTTTCAGGATTAGGCCCCATAAACATAATCTTCTCATTAGGATACACGATATTGATGCTT
1 CATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGAAGCTT
* * *
1387067 T-AGTTTCGGAACAAAGGCTTTCTTCCCACCAATTGTTTTAAAGTCTAAGTTCGTGCCTCAATTG
66 TGA-TTTCGCAACAAAGGCTTTCTTCCCACCAATTGTTGTAAAGTCTAAGTTCGTGCCTCAAATG
* *
1387131 AGACAAACATTGATTCTAGTAATGATCTTCATTCTTTTTGTGATAAGGCACT-TAAAACACATTC
130 AGACAAACATGGATTCTACTAATGATCTTCATTCTTTTTGTGATAAGGCACTAT-AAACACATTC
* * *
1387195 TCCGCATTAGGATAAATGACATTGATGATTTT-TTTGGCATGAAAATCTTTTCTTTGCCC-GATT
194 TCCTCATTAGGATAAATGACATTAATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCAG-TT
*
1387258 ATCCTTAAAATCAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT-CTGAATAGTCTCCATT
258 ATCCTTAAAATCAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCCT-AACAGTCTCCATT
** * * * * * *
1387322 CTGCTCAAGATTGGGAAGCCAAAACACATGGTCTTCGTTAGGACACACGACATTGATGCTATATT
322 CTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTCGTTAGGATACACGACATTGATGCTTTGTG
* * *
1387387 TCGCAAGAAAAGCTTTTCTTCCCCCGATTTCTGATAGAATCAAAGTTTATCTCTTAAATAAGACA
387 TCGCAAGAAAAGCTTTTCTTCCGCC-ATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACA
**
1387452 AACATGAATACTCACAC-AAATTCC
451 AACATGAATACTCACACTAACCT-C
*
1387476 CATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGATATTGAAGCTT
1 CATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGAAGCTT
** * * *
1387541 TCTTTTCGCAACAAAGGTTTTCTTCCCACCAATTGTTGTAAAGTCTAAAG-TCATGACTCAAATG
66 TGATTTCGCAACAAAGGCTTTCTTCCCACCAATTGTTGTAAAGTCT-AAGTTCGTGCCTCAAATG
* * * * *
1387605 AGGCAAATATTGATTCTAGC-AATGATCATCATTCTTTTAGTGATAAGGCACTATAAACA-ATT-
130 AGACAAACATGGATTCTA-CTAATGATCTTCATTCTTTTTGTGATAAGGCACTATAAACACATTC
* * *
1387667 TCTCTACATTAGGATAATTGACATTAATGTTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCAGC
194 TC-CT-CATTAGGATAAATGACATTAATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCAGT
*
1387732 TACCCTTAAAATCAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCCTAACAGTCTCCATT
257 TATCCTTAAAATCAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCCTAACAGTCTCCATT
* * * *
1387797 TTTTTCAAGATTGGGAAGCCAAAACACGTTGCCTTCGTTAGGATACACGACATTAAGGCTTTGGT
322 CTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTCGTTAGGATACACGACATTGATGCTTT-GT
* * * *
1387862 GTCACAAGAAAAGC-TTTCTTTCTCGCCATTTTTGATAGAATCCAGGTTTGTCTTTTAAATAAGA
386 GTCGCAAGAAAAGCTTTTC-TTC-CGCCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGA
* *
1387926 CTAACAGGAATACTCACACTAACCTC
449 CAAACATGAATACTCACACTAACCTC
* * * *
1387952 CATTCTTTTCAGGGTTAGGCACCATAAATATAGTCTTCTCATTAGGATACATGAT-TTGAAGCTT
1 CATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGAAGCTT
* * * *
1388016 TGATTTCGCAACAAAGGCTTTCTTCCCATCAATAGTTTTAAAGTCTAAGTTCGTGCCTCAAATAA
66 TGATTTCGCAACAAAGGCTTTCTTCCCACCAATTGTTGTAAAGTCTAAGTTCGTGCCTCAAATGA
* * ** * *
1388081 GACAAATATGGATTCTACTAATGATTTTCATTCTTTTTGTGATTTGGCACTATAAACACTTTTTC
131 GACAAACATGGATTCTACTAATGATCTTCATTCTTTTTGTGATAAGGCACTATAAACACATTCTC
* * *
1388146 CTCTTTAGGATACATGATATTAATG
196 CTCATTAGGATAAATGACATTAATG
1388171 CCTTGGCTTC
Statistics
Matches: 1015, Mismatches: 127, Indels: 54
0.85 0.11 0.05
Matches are distributed among these distances:
472 2 0.00
473 10 0.01
474 260 0.26
475 466 0.46
476 268 0.26
477 9 0.01
ACGTcount: A:0.31, C:0.20, G:0.14, T:0.35
Consensus pattern (474 bp):
CATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGAAGCTT
TGATTTCGCAACAAAGGCTTTCTTCCCACCAATTGTTGTAAAGTCTAAGTTCGTGCCTCAAATGA
GACAAACATGGATTCTACTAATGATCTTCATTCTTTTTGTGATAAGGCACTATAAACACATTCTC
CTCATTAGGATAAATGACATTAATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCAGTTATC
CTTAAAATCAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCCTAACAGTCTCCATTCTTT
TCAAGATTGGGAAGCCAAAACACATTGCCTTCGTTAGGATACACGACATTGATGCTTTGTGTCGC
AAGAAAAGCTTTTCTTCCGCCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAT
GAATACTCACACTAACCTC
Found at i:1388389 original size:633 final size:634
Alignment explanation
Indices: 1387517--1388773 Score: 1672
Period size: 633 Copynumber: 2.0 Consensus size: 634
1387507 AGTCTTCTCA
* ** *
1387517 TTAGGATACATGATATTGAAGCTTTCTTTTCGCAACAAAGGTTTTCTTCCCACCAATTGTTGTAA
1 TTAGGATACATGATATTGAAGCCTTCGCTTCGCAACAAAGGCTTTCTTCCCACCAATTGTTGTAA
* * * * *
1387582 AGTCTAAAGTCATGACTCAAATGAGGCAAATATTGATTCTAGCAATGATCATCATTCTTTTAGTG
66 AGTCTAAAGTCATGACTCAAATGAGACAAATATGGATTCTAACAATAACCATCATTCTTTTAGTG
1387647 ATAAGGCACTATAAACAATTTCTCTACATTAGGATAATTGACATTAATGTTTTTCTTTTGCATGA
131 ATAAGGCACTATAAACAATTTCTCTACATTAGGATAATTGACATTAATGTTTTTCTTTTGCATGA
* * *
1387712 AAATCTTTTCTTTGCCCAGCTACCCTTAAAATCAAAGTTCATCCCTTGAATAAGACAAGCATCGA
196 AAATCTTTTCTTTACCCAGCTACCCGTAAAATCAAAGTTCATCCCCTGAATAAGACAAGCATCGA
* * * ** * *
1387777 TTCTCCTAACAGTCTCCATTTTTTTCAAGATTGGGAAGCCAAAACACGTTGCCTTCGTTAGGATA
261 TTCTCCTAACAATCACCACTCCTTTCAAGATTGGGAAGCCAAAACACATTGCCTTCATTAGGATA
*
1387842 CA-CGACATTAAGGCTTTGGTGTCACAAGAAAAGC-TTTCTTTCTCGCCATTTTTGATAGAATCC
326 -AGCAACATTAAGGCTTTGGTGTCACAAGAAAAGCATTTC-TTCTCGCCATTTTTGATAGAA-CC
** * * * ** *
1387905 -AGGTTTGTCTTTTAAATAAGACTAACAGGAATACTCACACTAA-CCTCCATTCTTTTCAGGGTT
388 AAAATTGGTCTCTTAAAGAAGAAAAACAGGAATACTCACACTAATCC-CCATTCTTTTCAGGATT
* * * * * * *
1387968 AGGCACCATAAATATAGTCTTCTCATTAGGATACATGAT-TTGAAGCTTTGATT-TCGCAACAAA
452 AGGAACCACAAACATAGTCTTCTCAGTAGGATACACGATGTTGAAGCCTTGATTGTAG-AACAAA
* ** *
1388031 GGCTTTCTTCCCATCAATAGTTTTAAAGTCTAAGTTCGTGCCTCAAATAAGACAAATATGGATTC
516 GGCTTTCTTCCCACCAATAGTTGCAAAGTCTAACTTCGTGCCTCAAATAAGACAAATATGGATTC
** **
1388096 TACTAATGATTTTCATTCTTTTTGTGATTTGGCACTATAAACACTTTTTCCTCT
581 TACTAATGATCATCATTCTTTTTGTGATAAGGCACTATAAACACTTTTTCCTCT
* *
1388150 TTAGGATACATGATATT-AATGCCTTGGCTTCGCAACAAAGGCTTTCTTCCCACTAATTGTTGTA
1 TTAGGATACATGATATTGAA-GCCTTCGCTTCGCAACAAAGGCTTTCTTCCCACCAATTGTTGTA
* * * * *
1388214 TAGTCT-AAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAATAATAACCTTCATTC-TTTAT
65 AAGTCTAAAG-TCATGACTCAAATGAGACAAATATGGATTCTAACAATAACCATCATTCTTTTA-
* *
1388277 GTGATAAGGCACTATAAACACA-TTCT-TGGCATTAGGATAATTGACATTGATGTTTTTCTTTTG
128 GTGATAAGGCACTATAAACA-ATTTCTCT-ACATTAGGATAATTGACATTAATGTTTTTCTTTTG
* * * ** * *
1388340 CTTGGAAATCTTTTGTTTACCCATTTATCCGTAAAATGAAAGTTCATCCCCTGAATAAGACAAGC
191 CATGAAAATCTTTTCTTTACCCAGCTACCCGTAAAATCAAAGTTCATCCCCTGAATAAGACAAGC
* * *
1388405 ATCGATTCTCGTAATAATCACCACTCCTTTCAAGATTGGGAAGCCAAAACACATTGCGTTCATTA
256 ATCGATTCTCCTAACAATCACCACTCCTTTCAAGATTGGGAAGCCAAAACACATTGCCTTCATTA
* * * * *
1388470 GGATAAGCAACATTGATGCTTTGGTGTCTCAAGAAAAGCATTTCTTCTCGTCGTTTTTGATAGAA
321 GGATAAGCAACATTAAGGCTTTGGTGTCACAAGAAAAGCATTTCTTCTCGCCATTTTTGATAGAA
* *
1388535 CCAAAATTGGTCTCTTAAAGAAGAAAAACATGAATACTCACACTAATCCCCATTCTTTTTAGGAT
386 CCAAAATTGGTCTCTTAAAGAAGAAAAACAGGAATACTCACACTAATCCCCATTCTTTTCAGGAT
* *
1388600 TAGGAACCACAAACATAGTCTTCTCAGTAGGATACACGATGTTGATGCCTTGGTTGTAGAACAAA
451 TAGGAACCACAAACATAGTCTTCTCAGTAGGATACACGATGTTGAAGCCTTGATTGTAGAACAAA
* * *
1388665 GGCTTTCTTCCCACCAATTGTTGCAAAGTCTAACTTCGTGCCTCATATGAGACAAATATGGATTC
516 GGCTTTCTTCCCACCAATAGTTGCAAAGTCTAACTTCGTGCCTCAAATAAGACAAATATGGATTC
*
1388730 TAGTAATGATCATCATTCTTTTTGTGATAAGGCACTATAAACAC
581 TACTAATGATCATCATTCTTTTTGTGATAAGGCACTATAAACAC
1388774 ATTCTCCACA
Statistics
Matches: 538, Mismatches: 75, Indels: 21
0.85 0.12 0.03
Matches are distributed among these distances:
632 13 0.02
633 402 0.75
634 121 0.22
635 2 0.00
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.34
Consensus pattern (634 bp):
TTAGGATACATGATATTGAAGCCTTCGCTTCGCAACAAAGGCTTTCTTCCCACCAATTGTTGTAA
AGTCTAAAGTCATGACTCAAATGAGACAAATATGGATTCTAACAATAACCATCATTCTTTTAGTG
ATAAGGCACTATAAACAATTTCTCTACATTAGGATAATTGACATTAATGTTTTTCTTTTGCATGA
AAATCTTTTCTTTACCCAGCTACCCGTAAAATCAAAGTTCATCCCCTGAATAAGACAAGCATCGA
TTCTCCTAACAATCACCACTCCTTTCAAGATTGGGAAGCCAAAACACATTGCCTTCATTAGGATA
AGCAACATTAAGGCTTTGGTGTCACAAGAAAAGCATTTCTTCTCGCCATTTTTGATAGAACCAAA
ATTGGTCTCTTAAAGAAGAAAAACAGGAATACTCACACTAATCCCCATTCTTTTCAGGATTAGGA
ACCACAAACATAGTCTTCTCAGTAGGATACACGATGTTGAAGCCTTGATTGTAGAACAAAGGCTT
TCTTCCCACCAATAGTTGCAAAGTCTAACTTCGTGCCTCAAATAAGACAAATATGGATTCTACTA
ATGATCATCATTCTTTTTGTGATAAGGCACTATAAACACTTTTTCCTCT
Found at i:1389184 original size:475 final size:476
Alignment explanation
Indices: 1388150--1393547 Score: 4468
Period size: 475 Copynumber: 11.3 Consensus size: 476
1388140 TTTTTCCTCT
* * * * * * * *
1388150 TTAGGATACATGATATTAATGCCTTGGCTTCGCAACAAAGGCTTTCTTCCCACTAATTGTTGTAT
1 TTAGGATACACGATATTGATGCTTTGGTTTCACAACAAAGGCTTTCTTCCCACCAATTTTTGTAA
* * * * *
1388215 AGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAATAATAACCTTCATTCTTTATGTG
66 AGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTG
*** *
1388280 ATAAGGCACTATAAACACATTCTTGGCATTAGGATAATTGACATTGATGTTTTTCTTTTGCTTGG
131 ATAAGGCACTATAAACACATTCTCCTCATTAGGATAATTGACATTGATGTTTTTCTTTTGCATGG
* * * * * *
1388345 AAATCTTTTGTTTACCCATTTATCCGTAAAATGAAAGTTCATCCCCTGAATAAGACAAGCATCGA
196 AAATCTTTTCTTTGCCCAATTATCCTTAAAATCAAAGTTCATCCCTTGAATAAGACAAGCATCGA
* * * * * *
1388410 TTCTCGTAATAATCACCACTCCTTTCAAGATTGGGAAGCCAAAACACATTGCGTTCATTAGGATA
261 TTCTCATAATAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTCATTAGGATA
* * * * ** *
1388475 -AGCAACATTGATGCTTTGGTGTCTCAAGAAAAGCATTTCTTCTCGTCGTTTTTGATAGAACCAA
326 CA-CGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTCCCACCGTTTTTGATAGAATCAA
* * * * *
1388539 AATTGGTCTCTTAAAGAAGAAAAACATGAATACTCACACTAATCCCCATTCTTTTTAGGATTAGG
390 AGTTTGTCTCTTAAATAAGACAAACATGAATACTCACACTAATCCCCATTCTTTTCAGGATTAGG
* *
1388604 AACCACAAACATAGTCTTCTCA
455 CACCATAAACATAGTCTTCTCA
* * * * * *
1388626 GTAGGATACACGATGTTGATGCCTTGGTTGT-AGAACAAAGGCTTTCTTCCCACCAATTGTTGCA
1 TTAGGATACACGATATTGATGCTTTGGTT-TCACAACAAAGGCTTTCTTCCCACCAATTTTTGTA
* * * *
1388690 AAGTCTAACTTCGTGCCTCATATGAGACAAATATGGATTCTAGTAATGATCATCATTCTTTTTGT
65 AAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGT
* * *
1388755 GATAAGGCACTATAAACACATTCTCCACATTCGGATAATTTACATTGATGTTTTTCTTTTGCATG
130 GATAAGGCACTATAAACACATTCTCCTCATTAGGATAATTGACATTGATGTTTTTCTTTTGCATG
** * * *
1388820 GAAATCTTTTCTTCACACAATTATCCTTAAAATGAAAG-TCATCCCTTAAATAAGACAAGCATCG
195 GAAATCTTTTCTTTGCCCAATTATCCTTAAAATCAAAGTTCATCCCTTGAATAAGACAAGCATCG
* ** * *
1388884 ATTCTCATAATAGTCTCCACTTC-TTTCAAGATTGGGAAGCCAAAACACTTTGCCTTGGTTCGAA
260 ATTCTCATAATAGTCTCCA-TTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTCATTAGGA
* * * * *
1388948 TACACGACTTTGATGCTTCGGTGTCGCAAGGAAAGCTTTTCTTCACACCGTTTCTGATAGAATCA
324 TACACGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTCCCACCGTTTTTGATAGAATCA
* * * *
1389013 AAGTTTGTCTTTTAAATAACACAAACATGAATACTTACACTAATCCCCATTCTTTTCAGGGTTAG
389 AAGTTTGTCTCTTAAATAAGACAAACATGAATACTCACACTAATCCCCATTCTTTTCAGGATTAG
1389078 GCACCATAAACATAGTCTTCTCA
454 GCACCATAAACATAGTCTTCTCA
* * * * * *
1389101 TTAGGATGCATGATATTGGA-GCTTTGGTTTCACAGCAAAAGCTCTCTTCCCGCCAATTTTTGTA
1 TTAGGATACACGATATT-GATGCTTTGGTTTCACAACAAAGGCTTTCTTCCCACCAATTTTTGTA
* * * * *
1389165 AAGTGTAAGTTCATGCCTCAAATGCGACAAATATGGATTCTACTAATGAT-TTCCATTCTTTTTG
65 AAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTT-CATTCTTTTTG
** * * * * ***
1389229 TGATTTGGCACTACAAACACAGTT-TCCTCATTAGGAT-ATATGATATTAATGCTTCGGTTTTGC
129 TGATAAGGCACTATAAACACA-TTCTCCTCATTAGGATAAT-TGACATTGATGTTTTTCTTTTGC
** * * * * ** * * ** * *
1389292 A-ACAAAGGC-TTTCTTCCT-ACCAATTGT--TGTAAAGTCTGAGTTCGTGCCTAAAATGAGAAA
192 ATGGAAA-TCTTTTCTT--TGCCCAATTATCCT-TAAAATCAAAGTTCATCCCTTGAATAAGACA
* ** * *** ** * * * *
1389352 AACAAGGATTCT-AGTAAT-GATCTTCATTCTTTTTGTGATAAGGCA-CTATAAACACATTCCCC
253 AGCATCGATTCTCA-TAATAG-TCTCCATTCTTTTCAAGATTGGGAAGCCA-AAACACATTGCCT
* * ** * * ** * * * ***
1389414 TCATTAGGATA-ATTGACATTGATGATTTTCTTTTGCGTGGAAATCATTTCTT--TGTCGTATTT
315 TCATTAGGATACA-CGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTCCCACCGT-TTT
** * ** * * * * ** ** * * *
1389476 TCCTTAAAATCAAAGTTCATCCCTTGAATACA-ATAAGCAT-AGATTGTCTTTAC-AGTCTCCAC
378 T-GATAGAATCAAAGTTTGTCTCTTAAATA-AGACAAACATGA-ATACTC-ACACTAATCCCCAT
* * * * * * *
1389538 TCTTTTCAAGATTGGGAAGCC-GAAACATATTACCT-TCG
439 TCTTTTCAGGATTAGGCA-CCATAAACATAGT-CTTCTCA
* * * * * * ***
1389576 TTGGGATACACGATAATGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTCCTGTC-ATTTTTG-A
1 TTAGGATACACGATATTGATGCTTTGGTTTCACAACAAAGGC-TTTCTTCCCACCAATTTTTGTA
* * * * * * * * * *
1389639 TAGGATCAAAGTTTGT-CTCTTAAATAAGACAAACATGGATACTCA-CACTAATC-CCTATTCTT
65 -AAG-TCTAAGTTCGTGC-CTCAAATGAGACAAACATGGATTCT-AGTAATGATCTTC-ATTCTT
* * * * * * * * * **
1389701 TTCAG-GATTAGGCACCATAAACATAGTCTTCTCGTTAGGATACA-TGATATTGATGCTTTGGTT
125 TT-TGTGATAAGGCACTATAAACACATTCTCCTCATTAGGATA-ATTGACATTGATGTTTTTCTT
** * * ** * * * **
1389764 TTGCA-ACAAAGGC-TTTCTTCT-CACCAATTGTTGTT-AAGTCTAAGTTCATGCCTCAAATAAG
188 TTGCATGGAAA-TCTTTTCTT-TGC-CCAATTATCCTTAAAATCAAAGTTCATCCCTTGAATAAG
* * * *** ** * * *
1389825 ACAAACATGGATTCT-AGTAAT-GATCTTTCATTCTTTTTGTGATAAGGCA-CTACTAACACATT
250 ACAAGCATCGATTCTCA-TAATAG-TC-TCCATTCTTTTCAAGATTGGGAAGCCA-AAACACATT
* * * * * * ** * * * * * ** * **
1389887 -CTCCTCTTTAGGATAAATGACGTTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCTCTAT
311 GC-CTTCATTAGGATACACGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTCCCACCGT
*** * ** * * ** *
1389951 TTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATTG-ATTCTCGTA-AC-CGTCTCC
375 TTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACA-TGAATACTC--ACACTAATCCCC
* * *
1390013 ATTCTTTTCAAGATT-GGAAGCCA-AAGCACATTA-CCTT-T-A
437 ATTCTTTTCAGGATTAGGCA-CCATAA--ACA-TAGTCTTCTCA
* ** * * * ** * ** *
1390052 TTAGGATACATGACGTTGATGCTTGGGTGTT-GCAAGAGAAGATTTTCGTCCTGCC-ATTTTTAA
1 TTAGGATACACGATATTGATGCTTTGGT-TTCACAACA-AAGGCTTTCTTCCCACCAATTTTT-G
* * * * * ** * * * * **
1390115 TAGATTCAAAGTTTGT-CTCTCAAATAAGACAAACATTAATACTAATACTAATCCCCATTCTTTT
63 TAAAGTCTAAGTTCGTGC-CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCTTTT
* * * * * * * * * * * * **
1390179 CAG-GATTAGGCCCCATAGACATAGTCTTCTCGTTAGGATACA-CGATATTGATGCTTTAGTTTC
127 -TGTGATAAGGCACTATAAACACATTCTCCTCATTAGGATA-ATTGACATTGATGTTTTTCTTT-
* * * * * *** * * * * *
1390242 GATACAAGGAAAGCTTTTC-TT-CCCACCGTTTTTGATAGAATCCAAGTTTATCTCTTAAATAAG
189 --TGCATGGAAATCTTTTCTTTGCCCA--ATTATCCTTAAAATCAAAGTTCATCCCTTGAATAAG
* * * * * * * * * * *
1390305 ACTAA-CAT-GAATACTCACACTAATCTCCATTCTTTTCAGGGTTAGGCA-CCATAA-ATATAGT
250 AC-AAGCATCG-ATTCTCATAATAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTG-
* * * * * * * *
1390366 CTTCTCATTAGGATACATGATATTGAAGCTTTGGTTTCGCAACAAAGGC-TTTCTTCCCACCAAT
312 CCT-TCATTAGGATACACGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTCCCACC-GT
* * * * * * * * * * * ***
1390430 TGTTG-TA-AAGTCTAAGTTCGTGC-CTCAAATGAGACAAATACGGATTCT-ACTAATGATTTTC
375 TTTTGATAGAA-TCAAAGTTTGT-CTCTTAAATAAGACAAACATGAATACTCAC-ACTAATCCCC
* * ** * * *
1390491 ATTCTTTT-TGTGATTTGGCATTATAAACACA-TTTTCCTCT
437 ATTCTTTTCAG-GATTAGGCACCATAAACATAGTCTT-CTCA
* * * * *
1390531 TTAGGATACATGATATTAATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCTACCAATTGTTGTAA
1 TTAGGATACACGATATTGATGCTTTGGTTTCACAACAAAGGCTTTCTTCCCACCAATTTTTGTAA
* *
1390596 AGTCTAAGTTCGCGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATTCTTTTTGTG
66 AGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTG
* * * *
1390661 ATATGGCACTATAAGCACATTCTCCCCATTAGGATAATTGACATTGATGTTTTTCTTTTCCATGG
131 ATAAGGCACTATAAACACATTCTCCTCATTAGGATAATTGACATTGATGTTTTTCTTTTGCATGG
* * * * *
1390726 AAATTTTTTCTTTGCCCAATTATCCTCAAAATGAAAGTGCATCCCTTGAATAAGACAAGCATCAA
196 AAATCTTTTCTTTGCCCAATTATCCTTAAAATCAAAGTTCATCCCTTGAATAAGACAAGCATCGA
* * * *** * ** * *
1390791 TTCTCATAATAGTCTCCACTCCTTTCAAGATTAGGAAGCC--TTTACTTTGCCTTGGTTTGAATA
261 TTCTCATAATAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTCATTAGGATA
* * * * * * * *
1390854 CACGACTTTGATGATTCGGTGTCGCAAGAAAAGCTTTTCTTCACGCCATTGTTGATAGAATTAAA
326 CACGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTCCCACCGTTTTTGATAGAATCAAA
*
1390919 GTTTGTCTCTTAAATAAGAC--AGATGAATACTCACACTAATCCCCATTCTTTTCAGGATTAGGC
391 GTTTGTCTCTTAAATAAGACAAACATGAATACTCACACTAATCCCCATTCTTTTCAGGATTAGGC
1390982 ACCATAAACATAGTCTTCTCA
456 ACCATAAACATAGTCTTCTCA
* ** * * *
1391003 TTAGGATACACGATATTGATGCTTTGATTTTGCAACAAAGGCTTTCTTCCCACCAGTTGTTGCAA
1 TTAGGATACACGATATTGATGCTTTGGTTTCACAACAAAGGCTTTCTTCCCACCAATTTTTGTAA
* * * *
1391068 AGTCTAAGTTCGTGCCTCAAATTAGATAAACATAGATTCTAGTAATGATCTTAATTCTTTTTGTG
66 AGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTG
** * *
1391133 ATAAGGCACTATAAACACATTCTCCTCATTAGGATAAAAGACATTGATGTTTTCCTGTTGCATGG
131 ATAAGGCACTATAAACACATTCTCCTCATTAGGATAATTGACATTGATGTTTTTCTTTTGCATGG
* * * *
1391198 AAATCTTTTCTTTGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAAACAAGCATCGA
196 AAATCTTTTCTTTGCCCAATTATCCTTAAAATCAAAGTTCATCCCTTGAATAAGACAAGCATCGA
* * * * * *
1391263 TTCGCCA-AACAGTCTGCC-TTCTTTTCAAGATTGGGAAGCCAAACCACATTGTCATCATTAGCA
261 TTC-TCATAATAGTCT-CCATTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTCATTAGGA
* * * * * *
1391326 TACATGACATTAATGCTCTGGTGTCTCAAGAAAAGCTTTCCTTCCCGCCGTTTTTGATAGAATCA
324 TACACGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTCCCACCGTTTTTGATAGAATCA
* * * *
1391391 AAGTTTGTCT-TGAAAATAAGAC-AATATGAATACTCATACTAATCCCCATTCTTTTCAAGATTA
389 AAGTTTGTCTCT-TAAATAAGACAAACATGAATACTCACACTAATCCCCATTCTTTTCAGGATTA
* *
1391454 GGCACCATAAACGTAGTCTTCTTA
453 GGCACCATAAACATAGTCTTCTCA
* * * * * *
1391478 TTAGGATACACGATATTGAAGCCTTGGTTTCGCAACAAATGCTTTCTTCTCTCCAATTTTTGTAA
1 TTAGGATACACGATATTGATGCTTTGGTTTCACAACAAAGGCTTTCTTCCCACCAATTTTTGTAA
* *
1391543 AGTCTAAGTTCGTGCCTCAAATCAGACAAACATTGATTCCTA-TAATGATCTTCATTCTTTTTGT
66 AGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATT-CTAGTAATGATCTTCATTCTTTTTGT
* * * ** *
1391607 GATAAGGCACAATAAACAGATTCTCCGCATTAGGATAAACGACGTTGATGATTTTT-TTTTGCAT
130 GATAAGGCACTATAAACACATTCTCCTCATTAGGATAATTGACATTGATG-TTTTTCTTTTGCAT
*
1391671 GGAAATCTTTTCTTTGCCCAATTATCCTTAAAATCAAAGTTCATCCCTTGAATAAGACAAGCATT
194 GGAAATCTTTTCTTTGCCCAATTATCCTTAAAATCAAAGTTCATCCCTTGAATAAGACAAGCATC
* * * * *
1391736 GATTCTCATAATAGTCTCCGTTCTTTTCAAGATTGGGAAGCCAAAAGACGTTTCCTTCGTTAGGA
259 GATTCTCATAATAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTCATTAGGA
* **
1391801 TACACGACATTGATGCTTTGGTGTCGAAAGAAAAGCTTTTCTTCCCATTGTTTTTGATAGAATCA
324 TACACGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTCCCACCGTTTTTGATAGAATCA
* * * *
1391866 AAGTTTGTCTTTTAAATAAGACAAAGATGAAAACTCACACTAATCCCCATTCTTTTCAGGATTAA
389 AAGTTTGTCTCTTAAATAAGACAAACATGAATACTCACACTAATCCCCATTCTTTTCAGGATTAG
1391931 GCACCATAAACATAGTCTTCTCA
454 GCACCATAAACATAGTCTTCTCA
** * * ***
1391954 TTAGGATACATAATATTGATGCTTTGGTTTCATAATAAAGGCTTTCTTCTTTCCAATTTTTGTAA
1 TTAGGATACACGATATTGATGCTTTGGTTTCACAACAAAGGCTTTCTTCCCACCAATTTTTGTAA
* * * * ** *
1392019 ATTCTAAGTCCGTGCCTCAAATGAGATAAATACAGATTCTAGTAATAATCTTCATTCTTTTTGTG
66 AGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTG
* * *
1392084 ATAAGGCACTATAAACACATTCT-CTACAGTAGGAT-ATATAACATTGATGATTTTCTTTTGCAT
131 ATAAGGCACTATAAACACATTCTCCT-CATTAGGATAAT-TGACATTGATGTTTTTCTTTTGCAT
* *
1392147 GGAAATCTTTTCTTTGCCCAATTATCCTTAAAATCAAAGTTCATCCCTTGAATAAGAGAAGTATC
194 GGAAATCTTTTCTTTGCCCAATTATCCTTAAAATCAAAGTTCATCCCTTGAATAAGACAAGCATC
* * * * * *
1392212 GATTCTCGTAATAGTCTCCATTCTTTTCAAGAGTCGGAAGCCAAAACACATTACTTTCATTAGCA
259 GATTCTCATAATAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTCATTAGGA
* ** *
1392277 CACACGACATCAATGCTTTGGTGTCGCAAGAAAAGCTTTTC-TCCCTACCCTTTTTGATAGAATC
324 TACACGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTCCC-ACCGTTTTTGATAGAATC
* *
1392341 AAAAGTTTGTCTCTTAAATAAGACAAAGATAAATACTCACACTAATCCCCATTCTTTTCAGGATT
388 -AAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCACACTAATCCCCATTCTTTTCAGGATT
* *
1392406 AGGCACCATAAACATTGTTTTCTCA
452 AGGCACCATAAACATAGTCTTCTCA
* * *** *
1392431 TTAGGATACACAATATTGATGCTTTGGTTTCACGACAAAGGCTTTCTTCTTTCCAGTTTTTGTAA
1 TTAGGATACACGATATTGATGCTTTGGTTTCACAACAAAGGCTTTCTTCCCACCAATTTTTGTAA
* ** ** *
1392496 ATTCTAAGTTCGTGCCTCAAATGAGATGAACACAGATTCTAGTAATGATCTTCATTCCTTTTGTG
66 AGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTG
* * * * *
1392561 ATAAGGCACTATAAACACTTTCT-CTACAGTAGGAT-ATATAATATTGATGATTTTCTTTTGCAT
131 ATAAGGCACTATAAACACATTCTCCT-CATTAGGATAAT-TGACATTGATGTTTTTCTTTTGCAT
* * * * *
1392624 GGAAATCTTTTCTTCGCCCAAATT-TCCTTAAAATCAAAGCTCATCCCCTAAATAAGAGAAGCAT
194 GGAAATCTTTTCTTTGCCC-AATTATCCTTAAAATCAAAGTTCATCCCTTGAATAAGACAAGCAT
* * * * * **
1392688 CAATTCTCGTAACAGTCTCCATT-TCTTTCAAAATTGGGATGCCAAAACACATTGCCTTTGTTAG
258 CGATTCTCATAATAGTCTCCATTCT-TTTCAAGATTGGGAAGCCAAAACACATTGCCTTCATTAG
* * * * *
1392752 GATACACAACATTGATGCTTGGGTGTCTCAAGAAAAGCTTTTCTTCCCATCATTTTTGATAGAAT
322 GATACACGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTCCCACCGTTTTTGATAGAAT
* * *
1392817 CAAAGTTTGTGTCTTAAATAAGACAAACATGAATACTCAAACTAAT-CCCATTCTTTTTAGGATT
387 CAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCACACTAATCCCCATTCTTTTCAGGATT
*
1392881 AGGCATCATAAACATAGTCTTCTCA
452 AGGCACCATAAACATAGTCTTCTCA
* *** *
1392906 TTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTCTTCTTTCCAATTTTTGCAA
1 TTAGGATACACGATATTGATGCTTTGGTTTCACAACAAAGGCTTTCTTCCCACCAATTTTTGTAA
* * * * * *
1392971 ATTCTATGTTCTTGTCTCAAATGAGACAAACATAGATTCTAGCAATGATCTTCATTCTTTTTGTG
66 AGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTG
* * * * * * * *
1393036 ATATGGCACTATAAATAGATTCTTCGCATTA-GATAAATGTCATTGATGATTTTCTTTTGCATGG
131 ATAAGGCACTATAAACACATTCTCCTCATTAGGATAATTGACATTGATGTTTTTCTTTTGCATGG
* * * *
1393100 AAATCTTTTCTTTGCCCAATTATCCTTAAAATCAAAGTCCATCCCTTGAATAAGAGAAGTATCAA
196 AAATCTTTTCTTTGCCCAATTATCCTTAAAATCAAAGTTCATCCCTTGAATAAGACAAGCATCGA
* * * * *
1393165 TTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACAGATTACCTTCATTAGGACA
261 TTCTCATAATAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTCATTAGGATA
* * ** *
1393230 CACGACATCGATGCTTTGGTGTCGCAAAAAAAGCTTTTCTTCCTGCCCTTTTTGATAGAATCAAA
326 CACGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTCCCACCGTTTTTGATAGAATC-AA
* *
1393295 AGTTTGTCTCTTAAATAAGACAAAGATGAATACTCACACCAATCCCCATTCTTTTCAGGATTAGG
390 AGTTTGTCTCTTAAATAAGACAAACATGAATACTCACACTAATCCCCATTCTTTTCAGGATTAGG
*
1393360 CACCATAAGCATAGTCTTCTCA
455 CACCATAAACATAGTCTTCTCA
* * *
1393382 TTAGGATACACAATATTGATGCTTTGGTTTCACAAGAAAGG-TATTTTTCCCACCAATTTTTGTA
1 TTAGGATACACGATATTGATGCTTTGGTTTCACAACAAAGGCT-TTCTTCCCACCAATTTTTGTA
* * * * * * * * *
1393446 ATGTCTAAATTAGTACCTCAAATGCGACAAACATGGATTATACTAATAATCTTCATTCATTTTGT
65 AAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGT
* * *
1393511 GATTAGGCACTATAAACACCTTCTCCTCACTAGGATA
130 GATAAGGCACTATAAACACATTCTCCTCATTAGGATA
1393548 CATGATTTTG
Statistics
Matches: 4057, Mismatches: 731, Indels: 267
0.80 0.14 0.05
Matches are distributed among these distances:
472 300 0.07
473 59 0.01
474 346 0.09
475 1267 0.31
476 1150 0.28
477 598 0.15
478 183 0.05
479 112 0.03
480 39 0.01
481 3 0.00
ACGTcount: A:0.30, C:0.20, G:0.15, T:0.35
Consensus pattern (476 bp):
TTAGGATACACGATATTGATGCTTTGGTTTCACAACAAAGGCTTTCTTCCCACCAATTTTTGTAA
AGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTG
ATAAGGCACTATAAACACATTCTCCTCATTAGGATAATTGACATTGATGTTTTTCTTTTGCATGG
AAATCTTTTCTTTGCCCAATTATCCTTAAAATCAAAGTTCATCCCTTGAATAAGACAAGCATCGA
TTCTCATAATAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTCATTAGGATA
CACGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTCCCACCGTTTTTGATAGAATCAAA
GTTTGTCTCTTAAATAAGACAAACATGAATACTCACACTAATCCCCATTCTTTTCAGGATTAGGC
ACCATAAACATAGTCTTCTCA
Found at i:1390133 original size:476 final size:476
Alignment explanation
Indices: 1389259--1390240 Score: 1402
Period size: 476 Copynumber: 2.1 Consensus size: 476
1389249 AGTTTCCTCA
* * *
1389259 TTAGGATATATGATATTAATGCTTCGGTTTTGCAACAAAGGCTTTCTTCCTACCAATTGTTGTAA
1 TTAGGATACATGATATTGATGCTTTGGTTTTGCAACAAAGGCTTTCTTCCTACCAATTGTTGTAA
* * *
1389324 AGTCTGAGTTCGTGCCTAAAATGAGAAAAACAAGGATTCTAGTAATGATCTTCATTCTTTTTGTG
66 AGTCTAAGTTCATGCCTAAAATAAGAAAAACAAGGATTCTAGTAATGATCTTCATTCTTTTTGTG
* *
1389389 ATAAGGCACTATAAACACATTCCCCTCATTAGGATAATTGACATTGATGATTTTCTTTTGCGTGG
131 ATAAGGCACTATAAACACATTCCCCTCATTAGGATAAATGACATTGATGATTTTCTTTTGCATGG
* * *
1389454 AAATCATTTCTTTGTCGTATTTTCCTTAAAATCAAAGTTCATCCCTTGAATACAATAAGCATAGA
196 AAATCATTTCTTTGTCGTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATACAACAAACATAGA
* * * * * *
1389519 TTGTCTTTACAGTCTCCACTCTTTTCAAGATTGGGAAGCCGAAACATATTACCTTCGTTGGGATA
261 TTCTCGTAACAGTCTCCACTCTTTTCAAGATTGGGAAGCCGAAACACATTACCTTCATTAGGATA
* * * * * *
1389584 CACGATAATGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTCCTGTCATTTTTGATAGGATCAAA
326 CACGACAATGATGCTTGGGTGTCGCAAGAAAAGATTTTCGTCCTGCCATTTTTAATAGGATCAAA
* * * *
1389649 GTTTGTCTCTTAAATAAGACAAACATGGATACTCACACTAATCCCTATTCTTTTCAGGATTAGGC
391 GTTTGTCTCTCAAATAAGACAAACATGAATACTAACACTAATCCCCATTCTTTTCAGGATTAGGC
1389714 ACCATAAACATAGTCTTCTCG
456 ACCATAAACATAGTCTTCTCG
*
1389735 TTAGGATACATGATATTGATGCTTTGGTTTTGCAACAAAGGCTTTCTT-CTCACCAATTGTTGTT
1 TTAGGATACATGATATTGATGCTTTGGTTTTGCAACAAAGGCTTTCTTCCT-ACCAATTGTTGTA
* * *
1389799 AAGTCTAAGTTCATGCCTCAAATAAGACAAACATGGATTCTAGTAATGATCTTTCATTCTTTTTG
65 AAGTCTAAGTTCATGCCTAAAATAAGAAAAACAAGGATTCTAGTAATGATC-TTCATTCTTTTTG
* * *
1389864 TGATAAGGCACTACT-AACACATTCTCCTCTTTAGGATAAATGACGTTGATGATTTTCTTTTGCA
129 TGATAAGGCACTA-TAAACACATTCCCCTCATTAGGATAAATGACATTGATGATTTTCTTTTGCA
*
1389928 TGGAAATCTTTTCTTTGCTC-TATTTTCCTTAAAATCAAAGTTCATCCCTTAAATA-AGACAAAC
193 TGGAAATCATTTCTTTG-TCGTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATACA-ACAAAC
* * * *
1389991 ATTGATTCTCGTAACCGTCTCCATTCTTTTCAAGATT-GGAAGCC-AAAGCACATTACCTTTATT
256 ATAGATTCTCGTAACAGTCTCCACTCTTTTCAAGATTGGGAAGCCGAAA-CACATTACCTTCATT
* ** * *
1390054 AGGATACATGACGTTGATGCTTGGGTGTTGCAAGAGAAGATTTTCGTCCTGCCATTTTTAATA-G
320 AGGATACACGACAATGATGCTTGGGTGTCGCAAGAAAAGATTTTCGTCCTGCCATTTTTAATAGG
* *
1390118 ATTCAAAGTTTGTCTCTCAAATAAGACAAACATTAATACTAATACTAATCCCCATTCTTTTCAGG
385 A-TCAAAGTTTGTCTCTCAAATAAGACAAACATGAATACTAACACTAATCCCCATTCTTTTCAGG
* *
1390183 ATTAGGCCCCATAGACATAGTCTTCTCG
449 ATTAGGCACCATAAACATAGTCTTCTCG
* *
1390211 TTAGGATACACGATATTGATGCTTTAGTTT
1 TTAGGATACATGATATTGATGCTTTGGTTT
1390241 CGATACAAGG
Statistics
Matches: 449, Mismatches: 50, Indels: 14
0.88 0.10 0.03
Matches are distributed among these distances:
475 7 0.02
476 284 0.63
477 155 0.35
478 3 0.01
ACGTcount: A:0.29, C:0.19, G:0.16, T:0.36
Consensus pattern (476 bp):
TTAGGATACATGATATTGATGCTTTGGTTTTGCAACAAAGGCTTTCTTCCTACCAATTGTTGTAA
AGTCTAAGTTCATGCCTAAAATAAGAAAAACAAGGATTCTAGTAATGATCTTCATTCTTTTTGTG
ATAAGGCACTATAAACACATTCCCCTCATTAGGATAAATGACATTGATGATTTTCTTTTGCATGG
AAATCATTTCTTTGTCGTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATACAACAAACATAGA
TTCTCGTAACAGTCTCCACTCTTTTCAAGATTGGGAAGCCGAAACACATTACCTTCATTAGGATA
CACGACAATGATGCTTGGGTGTCGCAAGAAAAGATTTTCGTCCTGCCATTTTTAATAGGATCAAA
GTTTGTCTCTCAAATAAGACAAACATGAATACTAACACTAATCCCCATTCTTTTCAGGATTAGGC
ACCATAAACATAGTCTTCTCG
Found at i:1390337 original size:162 final size:162
Alignment explanation
Indices: 1390108--1390404 Score: 432
Period size: 162 Copynumber: 1.8 Consensus size: 162
1390098 CGTCCTGCCA
* * * *
1390108 TTTTTAATAGATTCAAAGTTTGTCTCTCAAATAAGACAAACATTAATACTAATACTAATCCCCAT
1 TTTTTAATAGAATCAAAGTTTATCTCTCAAATAAGACAAACATGAATACTAACACTAATCCCCAT
* * * *
1390173 TCTTTTCAGGATTAGGCCCCATAGACATAGTCTTCTCGTTAGGATACACGATATTGATGCTTTAG
66 TCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGAAGCTTTAG
1390238 TTTCGATACAAGGAAAGCTTTTCTTCCCACCG
131 TTTCGATACAAGGAAAGCTTTTCTTCCCACCG
* * * * * *
1390270 TTTTTGATAGAATCCAAGTTTATCTCTTAAATAAGACTAACATGAATACTCACACTAATCTCCAT
1 TTTTTAATAGAATCAAAGTTTATCTCTCAAATAAGACAAACATGAATACTAACACTAATCCCCAT
* * * *
1390335 TCTTTTCAGGGTTAGGCACCATAAATATAGTCTTCTCATTAGGATACATGATATTGAAGCTTTGG
66 TCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGAAGCTTTAG
1390400 TTTCG
131 TTTCG
1390405 CAACAAAGGC
Statistics
Matches: 117, Mismatches: 18, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
162 117 1.00
ACGTcount: A:0.31, C:0.20, G:0.14, T:0.36
Consensus pattern (162 bp):
TTTTTAATAGAATCAAAGTTTATCTCTCAAATAAGACAAACATGAATACTAACACTAATCCCCAT
TCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGAAGCTTTAG
TTTCGATACAAGGAAAGCTTTTCTTCCCACCG
Found at i:1392190 original size:951 final size:949
Alignment explanation
Indices: 1388150--1393552 Score: 4232
Period size: 951 Copynumber: 5.7 Consensus size: 949
1388140 TTTTTCCTCT
* * * * *** * * * *
1388150 TTAGGATACATGATATTAATGCCTTGGCTTCGCAACAAAGGCTTTCTTCCCACTAATTGTTGTAT
1 TTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTCTTCTTTCCAATTTTTGCAA
* * * * * * * *
1388215 AGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAATAATAACCTTCATTCTTTATGTG
66 ATTCTAAGTTCGTGCCTCAAATGAGATAAACATAGATTCTAGTAATGATCTTCATTCTTTTTGTG
* * *
1388280 ATAAGGCACTATAAACACATTCT-TGGCATTAGGATAATTGACATTGATGTTTTTCTTTTGCTTG
131 ATAAGGCACTATAAACACATTCTCT--CATTAGGATAA-TAACATTGATGATTTTCTTTTGCATG
* * * * * * * *
1388344 GAAATCTTTTGTTTACCCATTTATCCGTAAAATGAAAGTTCATCCCCTGAATAAGACAAGCATCG
193 GAAATCTTTTCTTTGCCCAATTATCCTTAAAATCAAAGTTCATCCCTTGAATAAGAGAAGTATCG
* * * * * * * *
1388409 ATTCTCGTAATAATCACCACTCCTTTCAAGATTGGGAAGCCAAAACACATTGCGTTCATTAGGAT
258 ATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTAC-TTCATTAGCAC
* ** * * * * * *
1388474 A-AGCAACATTGATGCTTTGGTGTCTCAAGAAAAGCATTTCTTCTCGTCGTTTTTGATAGAACCA
322 ACA-CGACATCAATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTCCCGCCCTTTTTGATAGAATCA
* * * * *
1388538 AAA-TTGGTCTCTTAAAGAAGAAAAACATGAATACTCACACTAATCCCCATTCTTTTTAGGATTA
386 AAAGTTTGTCTCTTAAATAAGACAAAGATGAATACTCACACTAATCCCCATTCTTTTCAGGATTA
* * * * * * * *
1388602 GGAACCACAAACATAGTCTTCTCAGTAGGATACACGATGTTGATGCCTTGGTTGT-AGAACAAAG
451 GGCACCATAAACATAGTCTTCTCATTAGGATACACAATATTGAAGCTTTGGTT-TCACAACAAAG
* * * * * * * *
1388666 GCTTTCTTCCCACCAATTGTTGCAAAGTCTAACTTCGTGCCTCATATGAGACAAATATGGATTCT
515 GCTTTCTTCTCTCCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATCAGACAAACATGGATTCT
* * * *
1388731 AGTAATGATCATCATTCTTTTTGTGATAAGGCACTATAAACACATTCTCCACATTCGGATAATTT
580 AGTAATGATCTTCATTCTTTTTGTGATAAGGCACTATAAACACATTCTCCACATTAGGATAAATG
** * *
1388796 ACATTGATG-TTTTTCTTTTGCATGGAAATCTTTTCTTCACACAATTATCCTTAAAATGAAAG-T
645 ACATTGATGATTTTT-TTTTGCATGGAAATCTTTTCTTTGCCCAATTATCCTTAAAATCAAAGTT
* *
1388859 CATCCCTTAAATAAGACAAGCATCGATTCTCATAATAGTCTCCACTTC-TTTCAAGATTGGGAAG
709 CATCCCTTGAATAAGACAAGCATCAATTCTCATAATAGTCTCCA-TTCTTTTCAAGATTGGGAAG
* * * * *
1388923 CCAAAACACTTTGCCTTGGTTCGAATACACGACTTTGATGCTTCGGTGTCGCAAGGAAAGCTTTT
773 CCAAAACACTTT-CCTTCGTTAGGATACACGACATTGATGCTTCGGTGTCGCAAGAAAAGCTTTT
* ** * * * * *
1388988 CTTCACACCGTTTCTGATAGAATCAAAGTTTGTCTTTTAAATAACACAAACATGAATACTTACAC
837 CTTCCCATTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAAGATGAATACTCACAC
*
1389053 TAATCCCCATTCTTTTCAGGGTTAGGCACCATAAACATAGTCTTCTCA
902 TAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCA
* * * * * * *** *
1389101 TTAGGATGCATGATATTGGA-GCTTTGGTTTCACAGCAAAAGCTCTCTTCCCGCCAATTTTTGTA
1 TTAGGATACACGATATT-GATGCTTTGGTTTCGCAACAAAGGCTTTCTTCTTTCCAATTTTTGCA
* * * * * * * *
1389165 AAGTGTAAGTTCATGCCTCAAATGCGACAAATATGGATTCTACTAATGAT-TTCCATTCTTTTTG
65 AATTCTAAGTTCGTGCCTCAAATGAGATAAACATAGATTCTAGTAATGATCTT-CATTCTTTTTG
** * * * * * ***
1389229 TGATTTGGCACTACAAACACAGTT-TCCTCATTAGGATATATGATATTAATGCTTCGGTTTTGCA
129 TGATAAGGCACTATAAACACA-TTCT-CTCATTAGGATA-ATAACATTGATGATTTTCTTTTGCA
** * * * * ** * * ** * *
1389293 -ACAAAGGC-TTTCTTCCT-ACCAATTGT--TGTAAAGTCTGAGTTCGTGCCTAAAATGAGAAAA
191 TGGAAA-TCTTTTCTT--TGCCCAATTATCCT-TAAAATCAAAGTTCATCCCTTGAATAAGAGAA
** ** * * * *** ** * * * *
1389353 ACAAGGATTCTAGTAA-TGATCTTCATTCTTTTTGTGATAAGGCA-CTATAAACACATTCCCCTC
252 GTATCGATTCTCGTAACAG-TCTCCATTCTTTTCAAGATTGGGAAGCCA-AAACACATT-ACTTC
* * * ** * ** * * ** * * * * * *
1389416 ATTAGGATA-ATTGACATTGATGATTTTCTTTTGCGTGGAAATCATTTCTT--TGTCGTATTTTC
314 ATTAGCACACA-CGACATCAATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTCCCGCCCT-TTTT-
** * ** * * * ** ** * * *
1389478 CTTAAAATC-AAAGTTCATCCCTTGAATACA-A-TAAGCAT-AGATTGTCTTTAC-AGTCTCCAC
376 GATAGAATCAAAAGTTTGTCTCTTAAATA-AGACAAAG-ATGA-ATACTC-ACACTAATCCCCAT
* * * * * * * * * * *
1389538 TCTTTTCAAGATTGGGAAGCC-GAAACATATTACCT-TCGTTGGGATACACGATAATGATGCTTT
437 TCTTTTCAGGATTAGGCA-CCATAAACATAGT-CTTCTCATTAGGATACACAATATTGAAGCTTT
* * * * * * * * *
1389601 GGTGTCGCAAGAAAAGCTTTTCTTC-CTGTC-ATTTTTG-ATAGGATCAAAGTTTGT-CTCTTAA
500 GGTTTCACAACAAAGGC-TTTCTTCTCT-CCAATTTTTGTA-AAG-TCTAAGTTCGTGC-CTCAA
* * * * * * * * *
1389662 ATAAGACAAACATGGATACTCA-CACTAATC-CCTATTCTTTTCAG-GATTAGGCACCATAAACA
560 ATCAGACAAACATGGATTCT-AGTAATGATCTTC-ATTCTTTT-TGTGATAAGGCACTATAAACA
* * * * * * * * ** ** *
1389724 TAGTCTTCTCGTTAGGATACATGATATTGATGCTTTGGTTTTGCA-ACAAAGGC-TTTCTTCT-C
622 CATTCTCCACATTAGGATAAATGACATTGATGATTTTTTTTTGCATGGAAA-TCTTTTCTT-TGC
* ** * * * ** * **
1389786 ACCAATTGTTGTT-AAGTCTAAGTTCATGCCTCAAATAAGACAAACATGGATTCT-AGTAAT-GA
685 -CCAATTATCCTTAAAATCAAAGTTCATCCCTTGAATAAGACAAGCATCAATTCTCA-TAATAG-
* *** ** * * * * * * *
1389848 TCTTTCATTCTTTTTGTGATAAGGCA-CTACTAACACATTCTCC-TCTTTAGGATAAATGACGTT
747 TC-TCCATTCTTTTCAAGATTGGGAAGCCA-AAACAC-TT-TCCTTCGTTAGGATACACGACATT
* *** * * * * * ** * *** * ** *
1389911 GATGATTTTCTTTTGCATGGAAATCTTTTCTTTGC-TCTATTTTCCTTAAAATCAAAGTTCATCC
808 GATGCTTCGGTGTCGCAAGAAAAGCTTTTCTTCCCAT-TGTTTTTGATAGAATCAAAGTTTGTCT
* * ** * * *
1389975 CTTAAATAAGACAAACATTG-ATTCTCGTA-AC-CGTCTCCATTCTTTTCAAGATT-GGAAGCCA
872 CTTAAATAAGACAAAGA-TGAATACTC--ACACTAATCCCCATTCTTTTCAGGATTAGGCA-CCA
*
1390036 -AAGCACATTA-CCTT-T-A
933 TAA--ACA-TAGTCTTCTCA
* ** * * ** * * * *
1390052 TTAGGATACATGACGTTGATGCTTGGGTGTT-GCAAGAGAAGATTTTCGTCCTGCC-ATTTTT-A
1 TTAGGATACACGATATTGATGCTTTGGT-TTCGCAACA-AAGGCTTTCTTCTTTCCAATTTTTGC
* * * * * * * * **
1390114 ATAGATTCAAAGTTTGT-CTCTCAAATAAGACAAACATTA-ATACTAATACTAATCCCCATTCTT
64 A-A-ATTCTAAGTTCGTGC-CTCAAATGAGATAAACA-TAGATTCTAGTAATGATCTTCATTCTT
* * * * * * * * ** * * **
1390177 TTCAG-GATTAGGCCCCATAGACATAGTCTTCTCGTTAGGATACACGATATTGATGCTTTAGTTT
125 TT-TGTGATAAGGCACTATAAACACATTC-TCTCATTAGGATA-ATAACATTGATGATTTTCTTT
* * * * * *** * * * * *
1390241 CGATACAAGGAAAGCTTTTC-TT-CCCACCGTTTTTGATAGAATCCAAGTTTATCTCTTAAATAA
187 ---TGCATGGAAATCTTTTCTTTGCCCA--ATTATCCTTAAAATCAAAGTTCATCCCTTGAATAA
* * * * * * * * * *
1390304 GACTAA-CAT-GAATACTC--ACACTAATCTCCATTCTTTTCAGGGTTAGGCA-CCATAAATATA
247 GA-GAAGTATCG-ATTCTCGTA-AC-AGTCTCCATTCTTTTCAAGATTGGGAAGCCA-AAACACA
* * * * * * * * * *
1390364 GT-CTTCTCATTAGGATACATGATATTGAA-GCTTTGGTTTCGCAACAAAGGC-TTTCTTCCCAC
307 TTAC-T-TCATTAGCACACACGACA-TCAATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTCCCGC
* * * * * * * * * * * *
1390426 CAATTGTTG-TA-AAGTC-TAAGTTCGTGC-CTCAAATGAGACAAATACGGATTCT-ACTAATGA
369 C-CTTTTTGATAGAA-TCAAAAGTTTGT-CTCTTAAATAAGACAAAGATGAATACTCAC-ACTAA
*** * * ** * * * **
1390486 TTTTCATTCTTTT-TGTGATTTGGCATTATAAACACA-TTTTCCTCTTTAGGATACATGATATT-
430 TCCCCATTCTTTTCAG-GATTAGGCACCATAAACATAGTCTT-CTCATTAGGATACACAATATTG
* * *
1390548 AATGCTTTGGTTTCGCAACAAAGGCTTTCTTC-CTACCAATTGTTGTAAAGTCTAAGTTCGCGCC
493 AA-GCTTTGGTTTCACAACAAAGGCTTTCTTCTCT-CCAATTTTTGTAAAGTCTAAGTTCGTGCC
* * * *
1390612 TCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATATGGCACTATAAGC
556 TCAAATCAGACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATAAGGCACTATAAAC
* * * *
1390677 ACATTCTCCCCATTAGGATAATTGACATTGATG-TTTTTCTTTTCCATGGAAATTTTTTCTTTGC
621 ACATTCTCCACATTAGGATAAATGACATTGATGATTTTT-TTTTGCATGGAAATCTTTTCTTTGC
* * *
1390741 CCAATTATCCTCAAAATGAAAGTGCATCCCTTGAATAAGACAAGCATCAATTCTCATAATAGTCT
685 CCAATTATCCTTAAAATCAAAGTTCATCCCTTGAATAAGACAAGCATCAATTCTCATAATAGTCT
* * * *** * * * * *
1390806 CCACTCCTTTCAAGATTAGGAAGCC--TTTACTTTGCCTTGGTTTGAATACACGACTTTGATGAT
750 CCATTCTTTTCAAGATTGGGAAGCCAAAACACTTT-CCTTCGTTAGGATACACGACATTGATGCT
*
1390869 TCGGTGTCGCAAGAAAAGCTTTTCTTCACGCCATTG---TTGATAGAATTAAAGTTTGTCTCTTA
814 TCGGTGTCGCAAGAAAAGCTTTTCTT--C-CCATTGTTTTTGATAGAATCAAAGTTTGTCTCTTA
1390931 AATAAGAC--AGATGAATACTCACACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATA
876 AATAAGACAAAGATGAATACTCACACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATA
1390994 GTCTTCTCA
941 GTCTTCTCA
* * *** * *
1391003 TTAGGATACACGATATTGATGCTTTGATTTTGCAACAAAGGCTTTCTTCCCACCAGTTGTTGCAA
1 TTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTCTTCTTTCCAATTTTTGCAA
* * *
1391068 AGTCTAAGTTCGTGCCTCAAATTAGATAAACATAGATTCTAGTAATGATCTTAATTCTTTTTGTG
66 ATTCTAAGTTCGTGCCTCAAATGAGATAAACATAGATTCTAGTAATGATCTTCATTCTTTTTGTG
* *
1391133 ATAAGGCACTATAAACACATTCTCCTCATTAGGATAAAAGACATTGATG-TTTTCCTGTTGCATG
131 ATAAGGCACTATAAACACATTCT-CTCATTAGGATAATA-ACATTGATGATTTT-CTTTTGCATG
* * * * * *
1391197 GAAATCTTTTCTTTGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAAACAAGCATCG
193 GAAATCTTTTCTTTGCCCAATTATCCTTAAAATCAAAGTTCATCCCTTGAATAAGAGAAGTATCG
* ** * * *
1391262 ATTCGCCAAACAGTCTGCC-TTCTTTTCAAGATTGGGAAGCCAAACCACATTGTCATCATTAGCA
258 ATTCTCGTAACAGTCT-CCATTCTTTTCAAGATTGGGAAGCCAAAACACATT-ACTTCATTAGCA
* * * * * * *
1391326 TACATGACATTAATGCTCTGGTGTCTCAAGAAAAGCTTTCCTTCCCGCCGTTTTTGATAGAATC-
321 CACACGACATCAATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTCCCGCCCTTTTTGATAGAATCA
* * * *
1391390 AAAGTTTGTCT-TGAAAATAAGAC-AATATGAATACTCATACTAATCCCCATTCTTTTCAAGATT
386 AAAGTTTGTCTCT-TAAATAAGACAAAGATGAATACTCACACTAATCCCCATTCTTTTCAGGATT
* * * * * *
1391453 AGGCACCATAAACGTAGTCTTCTTATTAGGATACACGATATTGAAGCCTTGGTTTCGCAACAAAT
450 AGGCACCATAAACATAGTCTTCTCATTAGGATACACAATATTGAAGCTTTGGTTTCACAACAAAG
*
1391518 GCTTTCTTCTCTCCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATCAGACAAACATTGATTCC
515 GCTTTCTTCTCTCCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATCAGACAAACATGGATT-C
* * * *
1391583 TA-TAATGATCTTCATTCTTTTTGTGATAAGGCACAATAAACAGATTCTCCGCATTAGGATAAAC
579 TAGTAATGATCTTCATTCTTTTTGTGATAAGGCACTATAAACACATTCTCCACATTAGGATAAAT
*
1391647 GACGTTGATGATTTTTTTTTGCATGGAAATCTTTTCTTTGCCCAATTATCCTTAAAATCAAAGTT
644 GACATTGATGATTTTTTTTTGCATGGAAATCTTTTCTTTGCCCAATTATCCTTAAAATCAAAGTT
** *
1391712 CATCCCTTGAATAAGACAAGCATTGATTCTCATAATAGTCTCCGTTCTTTTCAAGATTGGGAAGC
709 CATCCCTTGAATAAGACAAGCATCAATTCTCATAATAGTCTCCATTCTTTTCAAGATTGGGAAGC
* * *
1391777 CAAAAGACGTTTCCTTCGTTAGGATACACGACATTGATGCTTTGGTGTCGAAAGAAAAGCTTTTC
774 CAAAACAC-TTTCCTTCGTTAGGATACACGACATTGATGCTTCGGTGTCGCAAGAAAAGCTTTTC
* *
1391842 TTCCCATTGTTTTTGATAGAATCAAAGTTTGTCTTTTAAATAAGACAAAGATGAAAACTCACACT
838 TTCCCATTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAAGATGAATACTCACACT
*
1391907 AATCCCCATTCTTTTCAGGATTAAGCACCATAAACATAGTCTTCTCA
903 AATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCA
** ** * *
1391954 TTAGGATACATAATATTGATGCTTTGGTTTCATAATAAAGGCTTTCTTCTTTCCAATTTTTGTAA
1 TTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTCTTCTTTCCAATTTTTGCAA
* * * *
1392019 ATTCTAAGTCCGTGCCTCAAATGAGATAAATACAGATTCTAGTAATAATCTTCATTCTTTTTGTG
66 ATTCTAAGTTCGTGCCTCAAATGAGATAAACATAGATTCTAGTAATGATCTTCATTCTTTTTGTG
*
1392084 ATAAGGCACTATAAACACATTCTCTACAGTAGGATATATAACATTGATGATTTTCTTTTGCATGG
131 ATAAGGCACTATAAACACATTCTCT-CATTAGGATA-ATAACATTGATGATTTTCTTTTGCATGG
1392149 AAATCTTTTCTTTGCCCAATTATCCTTAAAATCAAAGTTCATCCCTTGAATAAGAGAAGTATCGA
194 AAATCTTTTCTTTGCCCAATTATCCTTAAAATCAAAGTTCATCCCTTGAATAAGAGAAGTATCGA
* * *
1392214 TTCTCGTAATAGTCTCCATTCTTTTCAAGAGTCGGAAGCCAAAACACATTACTTTCATTAGCACA
259 TTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTAC-TTCATTAGCACA
*
1392279 CACGACATCAATGCTTTGGTGTCGCAAGAAAAGCTTTTC-TCCCTACCCTTTTTGATAGAATCAA
323 CACGACATCAATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTCCC-GCCCTTTTTGATAGAATCAA
*
1392343 AAGTTTGTCTCTTAAATAAGACAAAGATAAATACTCACACTAATCCCCATTCTTTTCAGGATTAG
387 AAGTTTGTCTCTTAAATAAGACAAAGATGAATACTCACACTAATCCCCATTCTTTTCAGGATTAG
* * * *
1392408 GCACCATAAACATTGTTTTCTCATTAGGATACACAATATTGATGCTTTGGTTTCACGACAAAGGC
452 GCACCATAAACATAGTCTTCTCATTAGGATACACAATATTGAAGCTTTGGTTTCACAACAAAGGC
* * * * ** **
1392473 TTTCTTCTTTCCAGTTTTTGTAAATTCTAAGTTCGTGCCTCAAATGAGATGAACACAGATTCTAG
517 TTTCTTCTCTCCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATCAGACAAACATGGATTCTAG
* * * * * * *
1392538 TAATGATCTTCATTCCTTTTGTGATAAGGCACTATAAACACTTTCTCTACAGTAGGATATATAAT
582 TAATGATCTTCATTCTTTTTGTGATAAGGCACTATAAACACATTCTCCACATTAGGATAAATGAC
* * *
1392603 ATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTCGCCCAAATT-TCCTTAAAATCAAAGCTCA
647 ATTGATGATTTTTTTTTGCATGGAAATCTTTTCTTTGCCC-AATTATCCTTAAAATCAAAGTTCA
* * * * * * *
1392667 TCCCCTAAATAAGAGAAGCATCAATTCTCGTAACAGTCTCCATT-TCTTTCAAAATTGGGATGCC
711 TCCCTTGAATAAGACAAGCATCAATTCTCATAATAGTCTCCATTCT-TTTCAAGATTGGGAAGCC
* * * * *
1392731 AAAACACATTGCCTTTGTTAGGATACACAACATTGATGCTTGGGTGTCTCAAGAAAAGCTTTTCT
775 AAAACAC-TTTCCTTCGTTAGGATACACGACATTGATGCTTCGGTGTCGCAAGAAAAGCTTTTCT
** * * *
1392796 TCCCATCATTTTTGATAGAATCAAAGTTTGTGTCTTAAATAAGACAAACATGAATACTCAAACTA
839 TCCCATTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAAGATGAATACTCACACTA
* *
1392861 AT-CCCATTCTTTTTAGGATTAGGCATCATAAACATAGTCTTCTCA
904 ATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCA
1392906 TTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTCTTCTTTCCAATTTTTGCAA
1 TTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTCTTCTTTCCAATTTTTGCAA
* * * * *
1392971 ATTCTATGTTCTTGTCTCAAATGAGACAAACATAGATTCTAGCAATGATCTTCATTCTTTTTGTG
66 ATTCTAAGTTCGTGCCTCAAATGAGATAAACATAGATTCTAGTAATGATCTTCATTCTTTTTGTG
* * * * **
1393036 ATATGGCACTATAAATAGATTCTTCGCATTA-GATAAATGTCATTGATGATTTTCTTTTGCATGG
131 ATAAGGCACTATAAACACATTC-TCTCATTAGGAT-AATAACATTGATGATTTTCTTTTGCATGG
* *
1393100 AAATCTTTTCTTTGCCCAATTATCCTTAAAATCAAAGTCCATCCCTTGAATAAGAGAAGTATCAA
194 AAATCTTTTCTTTGCCCAATTATCCTTAAAATCAAAGTTCATCCCTTGAATAAGAGAAGTATCGA
* *
1393165 TTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACAGATTACCTTCATTAGGACA
259 TTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTA-CTTCATTAGCACA
* * *
1393230 CACGACATCGATGCTTTGGTGTCGCAAAAAAAGCTTTTCTTCCTGCCCTTTTTGATAGAATCAAA
323 CACGACATCAATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTCCCGCCCTTTTTGATAGAATCAAA
*
1393295 AGTTTGTCTCTTAAATAAGACAAAGATGAATACTCACACCAATCCCCATTCTTTTCAGGATTAGG
388 AGTTTGTCTCTTAAATAAGACAAAGATGAATACTCACACTAATCCCCATTCTTTTCAGGATTAGG
* * *
1393360 CACCATAAGCATAGTCTTCTCATTAGGATACACAATATTGATGCTTTGGTTTCACAAGAAAGG-T
453 CACCATAAACATAGTCTTCTCATTAGGATACACAATATTGAAGCTTTGGTTTCACAACAAAGGCT
* * * * * * * *
1393424 ATTTTTCCCACCAATTTTTGTAATGTCTAAATTAGTACCTCAAATGC-GACAAACATGGATTATA
518 -TTCTTCTCTCCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAAT-CAGACAAACATGGATTCTA
* * * * * * * *
1393488 CTAATAATCTTCATTCATTTTGTGATTAGGCACTATAAACACCTTCTCCTCACTAGGATACATGA
581 GTAATGATCTTCATTCTTTTTGTGATAAGGCACTATAAACACATTCTCCACATTAGGATAAATGA
1393553 TTTTGACGCT
Statistics
Matches: 3512, Mismatches: 759, Indels: 362
0.76 0.16 0.08
Matches are distributed among these distances:
946 11 0.00
947 408 0.12
948 63 0.02
949 121 0.03
950 360 0.10
951 1200 0.34
952 497 0.14
953 455 0.13
954 136 0.04
955 157 0.04
956 94 0.03
957 9 0.00
958 1 0.00
ACGTcount: A:0.30, C:0.20, G:0.15, T:0.35
Consensus pattern (949 bp):
TTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTCTTCTTTCCAATTTTTGCAA
ATTCTAAGTTCGTGCCTCAAATGAGATAAACATAGATTCTAGTAATGATCTTCATTCTTTTTGTG
ATAAGGCACTATAAACACATTCTCTCATTAGGATAATAACATTGATGATTTTCTTTTGCATGGAA
ATCTTTTCTTTGCCCAATTATCCTTAAAATCAAAGTTCATCCCTTGAATAAGAGAAGTATCGATT
CTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTACTTCATTAGCACACAC
GACATCAATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTCCCGCCCTTTTTGATAGAATCAAAAGT
TTGTCTCTTAAATAAGACAAAGATGAATACTCACACTAATCCCCATTCTTTTCAGGATTAGGCAC
CATAAACATAGTCTTCTCATTAGGATACACAATATTGAAGCTTTGGTTTCACAACAAAGGCTTTC
TTCTCTCCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATCAGACAAACATGGATTCTAGTAAT
GATCTTCATTCTTTTTGTGATAAGGCACTATAAACACATTCTCCACATTAGGATAAATGACATTG
ATGATTTTTTTTTGCATGGAAATCTTTTCTTTGCCCAATTATCCTTAAAATCAAAGTTCATCCCT
TGAATAAGACAAGCATCAATTCTCATAATAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACA
CTTTCCTTCGTTAGGATACACGACATTGATGCTTCGGTGTCGCAAGAAAAGCTTTTCTTCCCATT
GTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAAGATGAATACTCACACTAATCCCCA
TTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCA
Found at i:1392950 original size:158 final size:157
Alignment explanation
Indices: 1386527--1395445 Score: 1855
Period size: 158 Copynumber: 56.4 Consensus size: 157
1386517 AAATAAGACA
* * *
1386527 CATTCTTTTCAAGATTGGGCACCATAAACATAGTCTTCTCGTTAGGATACACGATATTGATGCTT
1 CATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTT
* * * * * *
1386592 T-GTTTTGCAACACAGGC-TTTCTTCCCACCAATTGTTGA-AAAGTCTAAGTTCGTGCC-TAGAA
66 TGGTTTCGCAAGA-AAGCTTTTCTTCCCACC-ATTTTTGATAAA-TCAAAGTTCGTCCCTTA-AA
* * * *
1386653 TGAGACAAACATGGATTCT-AGTAA-TGATCTT
127 TAAGACAAACATGAATTCTCA--AACTAATCTC
* * * * * * * * * *
1386684 CATTCTTTT-TGTGATAAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATAATGATGAT
1 CATTCTTTTCAG-GATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCT
** * * * * * * **
1386748 TTTCTTTTGCATGGAAATCTTTTCTTTGCC-CTATTTTCCTTA-AAATCAAAGTTTATCCCTTAA
65 TTGGTTTCGCA-AGAAAGCTTTTC-TTCCCACCATTTT--TGATAAATCAAAGTTCGTCCCTTAA
* **
1386811 ATAAGACAAACATCAATTCTCATAAC-CGTCTC
126 ATAAGACAAACATGAATTCTCA-AACTAATCTC
* * * * * * *
1386843 CATTCTTTACAAGATTGGGAAGCCA-AAGCACAT-TTCCTT-T-ATTAGGATACATGATGTTGAT
1 CATTCTTTTCAGGATTAGGCA-CCATAA--ACATAGT-CTTCTCATTAGGATACACGATATTGAT
* * * ** * * * *
1386904 GCTTTAGTGTT-GCAAGAGAAGATTTTCATCCCGTCGTTTTTGATAGATTCAAAGTTTGTCTCTT
62 GCTTTGGT-TTCGCAAGA-AAGCTTTTCTTCCCACCATTTTTGATA-AATCAAAGTTCGTCCCTT
* * * *
1386968 AAATAAGACAAACATTAATACTCATACTAATCCC
124 AAATAAGACAAACATGAATTCTCAAACTAATCTC
* *
1387002 CATTCTTTTCAGGATTAGGCCCCATAAACATAATCTTCTCATTAGGATACACGATATTGATGCTT
1 CATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTT
* * * * * * *
1387067 TAGTTTCGGAACAAAGGC-TTTCTTCCCACCAATTGTTT--TAAAGTCTAAGTTCGTGCCTCAAT
66 TGGTTTCGCAAGAAA-GCTTTTCTTCCCACC-ATT-TTTGATAAA-TCAAAGTTCGTCCCTTAAA
* * *
1387129 TGAGACAAACATTG-ATTCT-AGTAA-TGATCTT
127 TAAGACAAACA-TGAATTCTCA--AACTAATCTC
* * * * * * * * * * *
1387160 CATTCTTTT-TGTGATAAGGCA-CTTAAAACACATTCTCCGCATTAGGATAAATGACATTGATGA
1 CATTCTTTTCAG-GATTAGGCACCAT-AAACATAGTCTTCTCATTAGGATACACGATATTGATGC
* * * * * * *
1387223 TTT-TTTTGGCATGAAAATCTTTTCTTTGCC-CGATTATCCTT-A-AAATCAAAGTTCATCCCTT
64 TTTGGTTTCGCAAG-AAAGCTTTTC-TTCCCACCATT-T--TTGATAAATCAAAGTTCGTCCCTT
* * * *
1387284 GAATAAGACAAGCATCG-ATTCTCTGAA-TAGTCTC
124 AAATAAGACAAACAT-GAATTCTC-AAACTAATCTC
** * * * * * * * *
1387318 CATTCTGCTCAAGATTGGGAAGCCAAAACACATGGTC-T-TCGTTAGGACACACGACATTGATGC
1 CATTCTTTTCAGGATTAGGCA-CCATAA-ACATAGTCTTCTCATTAGGATACACGATATTGATGC
* * * ** *
1387381 TAT-ATTTCGCAAGAAAAGCTTTTCTTCCC-CCGATTTCTGATAGAATCAAAGTTTATCTCTTAA
64 TTTGGTTTCGCAAG-AAAGCTTTTCTTCCCACC-ATTTTTGATA-AATCAAAGTTCGTCCCTTAA
* * *
1387444 ATAAGACAAACATGAATACTCACACAAAT-TCC
126 ATAAGACAAACATGAATTCTCAAACTAATCT-C
* * *
1387476 CATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGATATTGAAGCTT
1 CATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTT
** * * * * ** *
1387541 TCTTTTCGCAACAAAGGTTTTCTTCCCACCAATTGTTG-TAAAGTCTAAAG-TCATGACTCAAAT
66 TGGTTTCGCAAGAAAGCTTTTCTTCCCACC-ATTTTTGATAAA-TC-AAAGTTCGTCCCTTAAAT
* * * *
1387604 GAGGCAAATATTG-ATTCT-AGCAA-TGATCAT-
128 AAGACAAACA-TGAATTCTCA--AACTAATC-TC
* * * * * *
1387634 CATTCTTTT-AGTGATAAGGCACTATAAACA-A-TTTCTCTACATTAGGATA-ATTGACATTAAT
1 CATTCTTTTCAG-GATTAGGCACCATAAACATAGTCT-TCT-CATTAGGATACA-CGATATTGAT
* ** * * * * *** *
1387695 GTTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCAGCTACCCTT-A-AAATCAAAGTTCATCCCT
62 GCTTTGGTTTCGCAAG-AAAGCTTTTC-TT-CCCA-CCATTTTTGATAAATCAAAGTTCGTCCCT
* * * *
1387758 TGAATAAGACAAGCATCG-ATTCTCCTAAC-AGTCTC
123 TAAATAAGACAAACAT-GAATTCT-CAAACTAATCTC
* * * * * * * * * *
1387793 CATTTTTTTCAAGATTGGGAAGCCA-AAACA-CGT-TGCCTTCGTTAGGATACACGACATTAAGG
1 CATTCTTTTCAGGATTAGGCA-CCATAAACATAGTCT-TC-TCATTAGGATACACGATATTGATG
* * * * * * * **
1387855 CTTTGGTGTCACAAGAAAAGC-TTTCTTTCTCGCCATTTTTGATAGAATCCAGGTTTGTCTTTTA
63 CTTTGGTTTCGCAAG-AAAGCTTTTC-TTCCCACCATTTTTGATA-AATCAAAGTTCGTCCCTTA
* * * * *
1387919 AATAAGACTAACAGGAATACTCACACTAACCTC
125 AATAAGACAAACATGAATTCTCAAACTAATCTC
* * * *
1387952 CATTCTTTTCAGGGTTAGGCACCATAAATATAGTCTTCTCATTAGGATACATGAT-TTGAAGCTT
1 CATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTT
* * * * * * *
1388016 TGATTTCGCAACAAAGGC-TTTCTTCCCATCAATAGTTTT-A-AAGTCTAAGTTCGTGCCTCAAA
66 TGGTTTCGCAAGAAA-GCTTTTCTTCCCA-CCAT--TTTTGATAAATCAAAGTTCGTCCCTTAAA
* * * * * *
1388078 TAAGACAAATATGGATTCTACTAA-TGATTTT
127 TAAGACAAACATGAATTCT-CAAACTAATCTC
* * * * * * *
1388109 CATTCTTTT-TGTGATTTGGCACTATAAACACT--TTTTCCTCTTTAGGATACATGATATTAATG
1 CATTCTTTTCAG-GATTAGGCACCATAAACA-TAGTCTT-CTCATTAGGATACACGATATTGATG
* * * * * * * * *
1388171 CCTTGGCTTCGCAACAAAGGC-TTTCTTCCCACTAATTGTTG-TATAGTCTAAGTTCGTGCCTCA
63 CTTTGGTTTCGCAAGAAA-GCTTTTCTTCCCAC-CATTTTTGATA-AATCAAAGTTCGTCCCTTA
* * * * * *
1388234 AATGAGACAAATATGGATTCT-AATAATAACCTT
125 AATAAGACAAACATGAATTCTCAA-ACTAATCTC
* * * * ** * *
1388267 CATTC-TTT-ATGTGATAAGGCACTATAAACACATTCTTGGCATTAGGATA-ATTGACATTGATG
1 CATTCTTTTCA-G-GATTAGGCACCATAAACATAGTCTTCTCATTAGGATACA-CGATATTGATG
* ** * ** * * ** * * * *
1388329 TTTTTCTTTTGCTTGGAAATCTTTTGTTTAC-CCATTTATCCG-TAAAATGAAAGTTCATCCCCT
63 CTTTGGTTTCGC-AAGAAAGCTTTTCTTCCCACCATTT-T-TGAT-AAATCAAAGTTCGTCCCTT
* * * *
1388392 GAATAAGACAAGCATCG-ATTCTCGTAA-TAATCAC
124 AAATAAGACAAACAT-GAATTCTC-AAACTAATCTC
* * * * * * * * * *
1388426 CACTCCTTTCAAGATTGGGAAGCCA-AAACACATTGCGT-TCATTAGGATA-AGCAACATTGATG
1 CATTCTTTTCAGGATTAGGCA-CCATAAACATAGT-CTTCTCATTAGGATACA-CGATATTGATG
* * * * ** * * * * *
1388488 CTTTGGTGTCTCAAGAAAAGCATTTCTTCTCGTCGTTTTTGATAGAACCAAAATTGGTCTCTTAA
63 CTTTGGTTTCGCAAG-AAAGCTTTTCTTCCCACCATTTTTGATA-AATCAAAGTTCGTCCCTTAA
* * * * *
1388553 AGAAGAAAAACATGAATACTCACACTAATCCC
126 ATAAGACAAACATGAATTCTCAAACTAATCTC
* * * * * *
1388585 CATTCTTTTTAGGATTAGGAACCACAAACATAGTCTTCTCAGTAGGATACACGATGTTGATGCCT
1 CATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTT
* * * * * * * * *
1388650 TGGTTGTAG-AACAAAGGC-TTTCTTCCCACCAATTGTTGCA-AAGTCTAACTTCGTGCCTCATA
66 TGGTT-TCGCAAGAAA-GCTTTTCTTCCCACC-ATTTTTG-ATAAATCAAAGTTCGTCCCTTAAA
* * * *
1388712 TGAGACAAATATGGATTCT-AGTAA-TGATCAT-
127 TAAGACAAACATGAATTCTCA--AACTAATC-TC
* * * * * * * * ** * *
1388743 CATTCTTTT-TGTGATAAGGCACTATAAACACATTCTCCACATTCGGATA-ATTTACATTGATGT
1 CATTCTTTTCAG-GATTAGGCACCATAAACATAGTCTTCTCATTAGGATACA-CGATATTGATGC
** * * * * * * *
1388806 TTTTCTTTTGCATGGAAATCTTTTCTTCACACAATTATCCTT-A-AAATGAAAG-TCATCCCTTA
64 TTTGGTTTCGCA-AGAAAGCTTTTCTTCCCACCATT-T--TTGATAAATCAAAGTTCGTCCCTTA
* *
1388868 AATAAGACAAGCATCG-ATTCTCATAA-TAGTCTC
125 AATAAGACAAACAT-GAATTCTCA-AACTAATCTC
* * * * * ** * *
1388901 CACTTC-TTTCAAGATTGGGAAGCCA-AAACACT-TTGCCT-TGGTTCGAATACACGACT-TTGA
1 CA-TTCTTTTCAGGATTAGGCA-CCATAAACA-TAGT-CTTCTCATTAGGATACACGA-TATTGA
* * * * * * **
1388961 TGCTTCGGTGTCGCAAGGAAAGCTTTTCTTCACACCGTTTCTGATAGAATCAAAGTTTGTCTTTT
61 TGCTTTGGTTTCGCAA-GAAAGCTTTTCTTCCCACCATTTTTGATA-AATCAAAGTTCGTCCCTT
* * * * *
1389026 AAATAACACAAACATGAATACTTACACTAATCCC
124 AAATAAGACAAACATGAATTCTCAAACTAATCTC
* * *
1389060 CATTCTTTTCAGGGTTAGGCACCATAAACATAGTCTTCTCATTAGGATGCATGATATTGGA-GCT
1 CATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATT-GATGCT
* * * ** * * *
1389124 TTGGTTTCAC-AGCAAAAGC-TCTCTTCCCGCCAATTTTTG-TAAAGTGTAAGTTCATGCCTCAA
65 TTGGTTTCGCAAG--AAAGCTTTTCTTCCCACC-ATTTTTGATAAA-TCAAAGTTCGTCCCTTAA
** * * * * *
1389186 ATGCGACAAATATGGATTCTACTAA-TGATTTC
126 ATAAGACAAACATGAATTCT-CAAACTAATCTC
* * * * * * * *
1389218 CATTCTTTT-TGTGATTTGGCACTACAAACACAGT-TTCCTCATTAGGATATATGATATTAATGC
1 CATTCTTTTCAG-GATTAGGCACCATAAACATAGTCTT-CTCATTAGGATACACGATATTGATGC
* * * * * ** * *
1389281 TTCGGTTTTGCAACAAAGGC-TTTCTTCCTACCAATTGTTG-TAAAGTCTGAGTTCGTGCCTAAA
64 TTTGGTTTCGCAAGAAA-GCTTTTCTTCCCACC-ATTTTTGATAAA-TCAAAGTTCGTCCCTTAA
* * * * * *
1389344 ATGAGAAAAACAAGGATTCT-AGTAA-TGATCTT
126 ATAAGACAAACATGAATTCTCA--AACTAATCTC
* * * * * ** * * *
1389376 CATTCTTTT-TGTGATAAGGCACTATAAACACATTCCCCTCATTAGGATA-ATTGACATTGATGA
1 CATTCTTTTCAG-GATTAGGCACCATAAACATAGTCTTCTCATTAGGATACA-CGATATTGATGC
** * ** * * ** ** * * *
1389439 TTTTCTTTTGCGTGGAAATCATTTCTTTGTC-GTATTTTCCTTA-AAATCAAAGTTCATCCCTTG
64 TTTGGTTTCGC-AAGAAAGCTTTTC-TTCCCACCATTTT--TGATAAATCAAAGTTCGTCCCTTA
* * * ** *
1389502 AATACA-ATAAGCAT-AGATTGTCTTTAC-AGTCTC
125 AATA-AGACAAACATGA-ATTCTC-AAACTAATCTC
* * * * * * * * * *
1389535 CACTCTTTTCAAGATTGGGAAGCC-GAAACATATTACCT-TCGTTGGGATACACGATAATGATGC
1 CATTCTTTTCAGGATTAGGCA-CCATAAACATAGT-CTTCTCATTAGGATACACGATATTGATGC
* *** * * *
1389598 TTTGGTGTCGCAAGAAAAGCTTTTCTTCCTGTCATTTTTGATAGGATCAAAGTTTGTCTCTTAAA
64 TTTGGTTTCGCAAG-AAAGCTTTTCTTCCCACCATTTTTGATA-AATCAAAGTTCGTCCCTTAAA
* * *
1389663 TAAGACAAACATGGATACTCACACTAATC-C
127 TAAGACAAACATGAATTCTCAAACTAATCTC
* *
1389693 CTATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCGTTAGGATACATGATATTGATGCT
1 C-ATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCT
* * * * * * * * * *
1389758 TTGGTTTTGCAACAAAGGC-TTTCTTCTCACCAATTGTTGTTAAGTCTAAGTTCATGCCTCAAAT
65 TTGGTTTCGCAAGAAA-GCTTTTCTTCCCACC-ATTTTTGATAAATCAAAGTTCGTCCCTTAAAT
* * *
1389822 AAGACAAACATGGATTCT-AGTAA-TGATCTTT
128 AAGACAAACATGAATTCTCA--AACTAATC-TC
* * * * * * * **
1389853 CATTCTTTT-TGTGATAAGGCACTACTAACACAT--TCTCCTCTTTAGGATAAATGACGTTGATG
1 CATTCTTTTCAG-GATTAGGCACCA-TAA-ACATAGTCTTCTCATTAGGATACACGATATTGATG
* ** * * * ** * * * *
1389915 ATTTTCTTTTGCATGGAAATCTTTTCTTTGCTCTATTTTCCTTA-AAATCAAAGTTCATCCCTTA
63 CTTTGGTTTCGCA-AGAAAGCTTTTCTTCCCACCATTTT--TGATAAATCAAAGTTCGTCCCTTA
* **
1389979 AATAAGACAAACATTG-ATTCTCGTAAC-CGTCTC
125 AATAAGACAAACA-TGAATTCTC-AAACTAATCTC
* * * * **
1390012 CATTCTTTTCAAGATT-GGAAGCCA-AAGCACATTA-CCTT-T-ATTAGGATACATGACGTTGAT
1 CATTCTTTTCAGGATTAGGCA-CCATAA--ACA-TAGTCTTCTCATTAGGATACACGATATTGAT
* * * ** * * * * *
1390072 GCTTGGGTGTT-GCAAGAGAAGATTTTCGTCCTGCCATTTTTAATAGATTCAAAGTTTGTCTCTC
62 GCTTTGGT-TTCGCAAGA-AAGCTTTTCTTCCCACCATTTTTGATA-AATCAAAGTTCGTCCCTT
* * *
1390136 AAATAAGACAAACATTAATACT-AATACTAATCCC
124 AAATAAGACAAACATGAATTCTCAA-ACTAATCTC
* * *
1390170 CATTCTTTTCAGGATTAGGCCCCATAGACATAGTCTTCTCGTTAGGATACACGATATTGATGCTT
1 CATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTT
* * * ** *
1390235 TAGTTTCGATACAAGGAAAGCTTTTCTTCCCACCGTTTTTGATAGAATCCAAGTTTATCTCTTAA
66 TGGTTTCG---CAA-GAAAGCTTTTCTTCCCACCATTTTTGATA-AATCAAAGTTCGTCCCTTAA
* * *
1390300 ATAAGACTAACATGAATACTCACACTAATCTC
126 ATAAGACAAACATGAATTCTCAAACTAATCTC
* * * *
1390332 CATTCTTTTCAGGGTTAGGCACCATAAATATAGTCTTCTCATTAGGATACATGATATTGAAGCTT
1 CATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTT
* * * * *
1390397 TGGTTTCGCAACAAAGGC-TTTCTTCCCACCAATTGTTG-TAAAGTCTAAGTTCGTGCCTCAAAT
66 TGGTTTCGCAAGAAA-GCTTTTCTTCCCACC-ATTTTTGATAAA-TCAAAGTTCGTCCCTTAAAT
* * * * * * * *
1390460 GAGACAAATACGGATTCTACTAA-TGATTTT
128 AAGACAAACATGAATTCT-CAAACTAATCTC
* * ** * * * * *
1390490 CATTCTTTT-TGTGATTTGGCATTATAAACACA-TTTTCCTCTTTAGGATACATGATATTAATGC
1 CATTCTTTTCAG-GATTAGGCACCATAAACATAGTCTT-CTCATTAGGATACACGATATTGATGC
* * * * *
1390553 TTTGGTTTCGCAACAAAGGC-TTTCTTCCTACCAATTGTTG-TAAAGTCTAAGTTCG-CGCCTCA
64 TTTGGTTTCGCAAGAAA-GCTTTTCTTCCCACC-ATTTTTGATAAA-TCAAAGTTCGTC-CCTTA
* * * * *
1390615 AATGAGACAAATATGGATTCT-AGTAA-TGATCTT
125 AATAAGACAAACATGAATTCTCA--AACTAATCTC
* * * * * * * * *
1390648 CATTCTTTT-TGTGA-TATGGCACTATAAGCACATTCTCCCCATTAGGATA-ATTGACATTGATG
1 CATTCTTTTCAG-GATTA-GGCACCATAAACATAGTCTTCTCATTAGGATACA-CGATATTGATG
* ** * ** * * * * *
1390710 TTTTTCTTTTC-CATGGAAATTTTTTCTTTGCCCA--ATTATCCTCA-AAATGAAAGTGCATCCC
63 -CTTTGGTTTCGCA-AGAAAGCTTTTC-TT-CCCACCATT-T-TTGATAAATCAAAGTTCGTCCC
* * * *
1390771 TTGAATAAGACAAGCATCAATTCTCATAA-TAGTCTC
122 TTAAATAAGACAAACATGAATTCTCA-AACTAATCTC
* * * * ** * * * * *
1390807 CACTCCTTTCAAGATTAGGAAGCC-TTTACTTTGCCTTGGT--TT-GAATACACGACT-TTGATG
1 CATTCTTTTCAGGATTAGGCA-CCATAAACATAGTCTT-CTCATTAGGATACACGA-TATTGATG
* * * * * * * * *
1390867 ATTCGGTGTCGCAAGAAAAGCTTTTCTTCACGCCATTGTTGATAGAATTAAAGTTTGTCTCTTAA
63 CTTTGGTTTCGCAAG-AAAGCTTTTCTTCCCACCATTTTTGATA-AATCAAAGTTCGTCCCTTAA
* * * *
1390932 ATAAGAC--AGATGAATACTCACACTAATCCC
126 ATAAGACAAACATGAATTCTCAAACTAATCTC
1390962 CATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTT
1 CATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTT
* * * * * * * *
1391027 TGATTTTGCAACAAAGGC-TTTCTTCCCACCAGTTGTTGCA-AAGTCTAAGTTCGTGCCTCAAAT
66 TGGTTTCGCAAGAAA-GCTTTTCTTCCCACCA-TTTTTG-ATAAATCAAAGTTCGTCCCTTAAAT
* * * *
1391090 TAGATAAACAT-AGATTCT-AGTAA-TGATCTT
128 AAGACAAACATGA-ATTCTCA--AACTAATCTC
* * * * * * * * * * *
1391120 AATTCTTTT-TGTGATAAGGCACTATAAACACATTCTCCTCATTAGGATAAAAGACATTGATGTT
1 CATTCTTTTCAG-GATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCT
** * * * * * * * *
1391184 TTCCTGTT-GCATGGAAATCTTTTCTTTGCC-CTATTTTCCTTA-AAATGAAAGTTCATCCCTTG
65 TTGGT-TTCGCA-AGAAAGCTTTTC-TTCCCACCATTTT--TGATAAATCAAAGTTCGTCCCTTA
* * * *
1391246 AATAAAACAAGCATCG-ATTCGCCAAAC-AGTCTGC
125 AATAAGACAAACAT-GAATTC-TCAAACTAATCT-C
* * * * * * * * *
1391280 C-TTCTTTTCAAGATTGGGAAGCCA-AACCACATTGTC--ATCATTAGCATACATGACATTAATG
1 CATTCTTTTCAGGATTAGGCA-CCATAA--ACATAGTCTTCTCATTAGGATACACGATATTGATG
* * * * * * *
1391341 CTCTGGTGTCTCAAGAAAAGCTTTCCTTCCCGCCGTTTTTGATAGAATCAAAGTTTGT--CTTGA
63 CTTTGGTTTCGCAAG-AAAGCTTTTCTTCCCACCATTTTTGATA-AATCAAAGTTCGTCCCTT--
* * * *
1391404 AAATAAGAC-AATATGAATACTCATACTAATCCC
124 AAATAAGACAAACATGAATTCTCAAACTAATCTC
* * * * *
1391437 CATTCTTTTCAAGATTAGGCACCATAAACGTAGTCTTCTTATTAGGATACACGATATTGAAGCCT
1 CATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTT
* * * * * *
1391502 TGGTTTCGCAACAAATGC-TTTCTTCTCTCCAATTTTTG-TAAAGTCTAAGTTCGTGCCTCAAAT
66 TGGTTTCGCAAGAAA-GCTTTTCTTCCCACC-ATTTTTGATAAA-TCAAAGTTCGTCCCTTAAAT
* * *
1391565 CAGACAAACATTG-ATTC-CTATAA-TGATCTT
128 AAGACAAACA-TGAATTCTC-A-AACTAATCTC
* * * * * * * * ** *
1391595 CATTCTTTT-TGTGATAAGGCACAATAAACAGATTCTCCGCATTAGGATAAACGACGTTGATGAT
1 CATTCTTTTCAG-GATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCT
** * * * *
1391659 TTTTTTTTGCATGGAAATCTTTTCTTTGCCCA--ATTATCCTT-A-AAATCAAAGTTCATCCCTT
65 TTGGTTTCGCA-AGAAAGCTTTTC-TT-CCCACCATT-T--TTGATAAATCAAAGTTCGTCCCTT
* * *
1391720 GAATAAGACAAGCATTG-ATTCTCATAA-TAGTCTC
124 AAATAAGACAAACA-TGAATTCTCA-AACTAATCTC
* * * * * * * *
1391754 CGTTCTTTTCAAGATTGGGAAGCCA-AAAGA-CGT-TTCCTTCGTTAGGATACACGACATTGATG
1 CATTCTTTTCAGGATTAGGCA-CCATAAACATAGTCTT-C-TCATTAGGATACACGATATTGATG
* * *** * **
1391816 CTTTGGTGTCGAAAGAAAAGCTTTTCTTCCCATTGTTTTTGATAGAATCAAAGTTTGTCTTTTAA
63 CTTTGGTTTCGCAAG-AAAGCTTTTCTTCCCACCATTTTTGATA-AATCAAAGTTCGTCCCTTAA
* ** * *
1391881 ATAAGACAAAGATGAAAACTCACACTAATCCC
126 ATAAGACAAACATGAATTCTCAAACTAATCTC
* **
1391913 CATTCTTTTCAGGATTAAGCACCATAAACATAGTCTTCTCATTAGGATACATAATATTGATGCTT
1 CATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTT
** * * * * * *
1391978 TGGTTTCATAATAAAGGCTTTCTTCTTTCCA--ATTTTTG-TAAATTCTAAGTCCGTGCCTCAAA
66 TGGTTTCGCAAGAAA-GC-TT-TTCTTCCCACCATTTTTGATAAA-TCAAAGTTCGTCCCTTAAA
* * *
1392040 TGAGATAAATACA-G-ATTCT-AGTAA-TAATCTT
127 TAAGA-CAA-ACATGAATTCTCA--AACTAATCTC
* * * * * * * ** * *
1392071 CATTCTTTT-TGTGATAAGGCACTATAAACACATTC-TCTACAGTAGGATATATAACATTGATGA
1 CATTCTTTTCAG-GATTAGGCACCATAAACATAGTCTTCT-CATTAGGATACACGATATTGATGC
** * * * *
1392134 TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCA--ATTATCCTT-A-AAATCAAAGTTCATCCCT
64 TTTGGTTTCGCA-AGAAAGCTTTTC-TT-CCCACCATT-T--TTGATAAATCAAAGTTCGTCCCT
* * ** * *
1392195 TGAATAAGAGAAGTATCG-ATTCTCGTAA-TAGTCTC
123 TAAATAAGACAAACAT-GAATTCTC-AAACTAATCTC
* * * * * * * * * **
1392230 CATTCTTTTCAAGAGTCGGAAGCCA-AAACACATTACTT-TCATTAGCACACACGACATCAATGC
1 CATTCTTTTCAGGATTAGGCA-CCATAAACATAGT-CTTCTCATTAGGATACACGATATTGATGC
* * * *
1392293 TTTGGTGTCGCAAGAAAAGCTTTTC-TCCCTACCCTTTTTGATAGAATCAAAAGTTTGTCTCTTA
64 TTTGGTTTCGCAAG-AAAGCTTTTCTTCCC-ACCATTTTTGATA-AATC-AAAGTTCGTCCCTTA
* * * * *
1392357 AATAAGACAAAGATAAATACTCACACTAATCCC
125 AATAAGACAAACATGAATTCTCAAACTAATCTC
* * *
1392390 CATTCTTTTCAGGATTAGGCACCATAAACATTGTTTTCTCATTAGGATACACAATATTGATGCTT
1 CATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTT
* * * *** * * *
1392455 TGGTTTCACGACAAAGGC-TTTCTTCTTTCCAGTTTTTG-TAAATTCTAAGTTCGTGCCTCAAAT
66 TGGTTTCGCAAGAAA-GCTTTTCTTCCCACCA-TTTTTGATAAA-TCAAAGTTCGTCCCTTAAAT
* * * *
1392518 GAGATGAACACA-G-ATTCT-AGTAA-TGATCTT
128 AAGA-CAA-ACATGAATTCTCA--AACTAATCTC
* * * * * **
1392548 CATTCCTTTT--GTGATAAGGCACTATAAACACT-TTC-TCTACAGTAGGATATATAATATTGAT
1 CATT-CTTTTCAG-GATTAGGCACCATAAACA-TAGTCTTCT-CATTAGGATACACGATATTGAT
* ** * * * * * *
1392609 GATTTTCTTTTGCATGGAAATCTTTTCTTCGCC-CAAATTTCCTT-A-AAATCAAAGCTCATCCC
62 GCTTTGGTTTCGCA-AGAAAGCTTTTCTTC-CCAC-CATTT--TTGATAAATCAAAGTTCGTCCC
* * * * * *
1392671 CTAAATAAGAGAAGCATCAATTCTCGTAAC-AGTCTC
122 TTAAATAAGACAAACATGAATTCTC-AAACTAATCTC
** * * * * * * *
1392707 CATT-TCTTTCAAAATT-GGGATGCCAAAACACATTGCCTT-T-GTTAGGATACACAACATTGAT
1 CATTCT-TTTCAGGATTAGGCA--CCATAA-ACATAGTCTTCTCATTAGGATACACGATATTGAT
* * * * * **
1392768 GCTTGGGTGTCTCAAGAAAAGCTTTTCTTCCCATCATTTTTGATAGAATCAAAGTTTGTGTCTTA
62 GCTTTGGTTTCGCAAG-AAAGCTTTTCTTCCCACCATTTTTGATA-AATCAAAGTTCGTCCCTTA
*
1392833 AATAAGACAAACATGAATACTCAAACTAATC-C
125 AATAAGACAAACATGAATTCTCAAACTAATCTC
* *
1392865 CATTCTTTTTAGGATTAGGCATCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTT
1 CATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTT
* * * * * * ** *
1392930 TGGTTTCGCAACAAAGGCTTTCTTCTTTCCA--ATTTTTGCA-AATTCTATGTTCTTGTCTCAAA
66 TGGTTTCGCAAGAAA-GC-TT-TTCTTCCCACCATTTTTG-ATAAATCAAAGTTCGTCCCTTAAA
* * *
1392992 TGAGACAAACAT-AGATTCT-AGCAA-TGATCTT
127 TAAGACAAACATGA-ATTCTCA--AACTAATCTC
* * * * * * * *
1393023 CATTCTTTT-TGTGA-TATGGCACTATAAATAGATTCTTCGCATTA-GATAAATG-TCATTGATG
1 CATTCTTTTCAG-GATTA-GGCACCATAAACATAGTCTTCTCATTAGGATACACGAT-ATTGATG
* ** * * * * *
1393084 ATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCA--ATTATCCTT-A-AAATCAAAGTCCATCCC
63 CTTTGGTTTCGCA-AGAAAGCTTTTC-TT-CCCACCATT-T--TTGATAAATCAAAGTTCGTCCC
* * ** * * *
1393145 TTGAATAAGAGAAGTATCAATTCTCGTAAC-AGTCTC
122 TTAAATAAGACAAACATGAATTCTC-AAACTAATCTC
* * * * * * * * *
1393181 CATTCTTTTCAAGATTGGGAAGCCA-AAACAGATTACCT-TCATTAGGACACACGACATCGATGC
1 CATTCTTTTCAGGATTAGGCA-CCATAAACATAGT-CTTCTCATTAGGATACACGATATTGATGC
* * ** * * *
1393244 TTTGGTGTCGCAAAAAAAGCTTTTCTTCCTGCCCTTTTTGATAGAATCAAAAGTTTGTCTCTTAA
64 TTTGGTTTCGC-AAGAAAGCTTTTCTTCCCACCATTTTTGATA-AATC-AAAGTTCGTCCCTTAA
* * * * *
1393309 ATAAGACAAAGATGAATACTCACACCAATCCC
126 ATAAGACAAACATGAATTCTCAAACTAATCTC
* *
1393341 CATTCTTTTCAGGATTAGGCACCATAAGCATAGTCTTCTCATTAGGATACACAATATTGATGCTT
1 CATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTT
* * * * * *
1393406 TGGTTTCACAAGAAAGGTATTT-TTCCCACCAATTTTTG-TAATGTCTAAA-TTAGTACCTCAAA
66 TGGTTTCGCAAGAAAGCT-TTTCTTCCCACC-ATTTTTGATAA-ATC-AAAGTTCGTCCCTTAAA
** * * * *
1393468 TGCGACAAACATGGATTATACTAA-TAATCTT
127 TAAGACAAACATGAATTCT-CAAACTAATCTC
* *** * * * * *
1393499 CATTCATTTT--GTGATTAGGCACTATAAACACCTTCTCCTCACTAGGATACATGATTTTGACGC
1 CATTC-TTTTCAG-GATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGC
* * * * * * * **
1393562 TTTAGTTTCGCAACAAAGGC-TTTCTTCCC-CCAAATTGTTG-TAAAGTCTATGTTCATGCCACA
64 TTTGGTTTCGCAAGAAA-GCTTTTCTTCCCACC--ATTTTTGATAAA-TCAAAGTTCGTCCCTTA
* * * *
1393624 AATGAGACAAACATGGATTCT-AGTAA-TGATCTT
125 AATAAGACAAACATGAATTCTCA--AACTAATCTC
* * * * * * * * * * * * *
1393657 CATTCACTTT--GCGATAAGG---GATAAACAGATTCTCCGCAGTAAGATAAATGACATTAATGA
1 CATTC-TTTTCAG-GATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATG-
* ** * *
1393717 TTTTCCTTT-GCATTA-AAATCTTTTCTTTGCCCA--ATTATCCTT-A-AAATCAAAGTTCATCC
63 CTTTGGTTTCGCA--AGAAAGCTTTTC-TT-CCCACCATT-T--TTGATAAATCAAAGTTCGTCC
* * ** * * * *
1393776 TTTGAATAAGGGAAGCATCG-ATTCACGTAAC-AGTCTC
121 CTTAAATAAGACAAACAT-GAATTCTC-AAACTAATCTC
* * * * *
1393813 CATTCTTTTCAAGATTGGGAAGCCA-AAAC--A-------CATT--G-T---GGACATTGATGCT
1 CATTCTTTTCAGGATTAGGCA-CCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCT
** * * * *
1393862 TTGGTGTT-GCAAGAAAAGCTTTTCTTTTCGCCCTTTTTGATAGAATCAAAGTTTGTCTCTTAAA
65 TTGGT-TTCGCAAG-AAAGCTTTTCTTCCCACCATTTTTGATA-AATCAAAGTTCGTCCCTTAAA
* * *
1393926 TAAGACAAACATGAATAAC-CACACCAATAC-C
127 TAAGACAAACATGAAT-TCTCAAACTAAT-CTC
* ** * * *
1393957 CATTCCTGCCACGATTAGGCACCATAAACATAGTCTTCTCATTAGGGTACACGATATTGATGCTC
1 CATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTT
* * * * * *
1394022 TGGTTTTGCAACAAAGGC-TTTCTTCCCACCAATTGTTG-TAAAGTCTAAGTTGGT-GCTATAAA
66 TGGTTTCGCAAGAAA-GCTTTTCTTCCCACC-ATTTTTGATAAA-TCAAAGTTCGTCCCT-TAAA
* * * *
1394084 TGAGAC-AA-ATGAGGATTCT---AGTAATATT
127 TAAGACAAACATGA--ATTCTCAAACTAATCTC
* * ** * * * * * ** ***
1394112 CATTCTTTT-TGTGATAAGGCAATATAAACAGT-TTCTCCGCATTAGGATAAAAGACGTTGACAA
1 CATTCTTTTCAG-GATTAGGCACCATAAACA-TAGTCTTCTCATTAGGATACACGATATTGATGC
** * * * *
1394175 TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCA--ATTATCCTTG--AAATCAAAGTTCATCCCT
64 TTTGGTTTCGCA-AGAAAGCTTTTC-TT-CCCACCATT-T--TTGATAAATCAAAGTTCGTCCCT
* * * * *
1394236 TGAATAAGACAAGCATCG-ATTATCGTAAC-AGTCTC
123 TAAATAAGACAAACAT-GAATTCTC-AAACTAATCTC
* * * * * * * *
1394271 CATTCTTTTTAAGATT-GGGATGCCA-AAACACATTGCCT-TCATTAGGATACACAACATTGATG
1 CATTCTTTTCAGGATTAGGCA--CCATAAACATAGT-CTTCTCATTAGGATACACGATATTGATG
* * * * * * **
1394333 CTTTGGTGTCGTAAGAAAGGCTTTTATTGCCATCATTTTTGATAGAATCAAAAGTTTGTCTTTTA
63 CTTTGGTTTCGCAAGAAA-GCTTTTCTTCCCACCATTTTTGATA-AATC-AAAGTTCGTCCCTTA
* * *
1394398 AATAAGACAAACATGAATACTCACACTAATCCC
125 AATAAGACAAACATGAATTCTCAAACTAATCTC
* * * * * * *
1394431 CGTTCTTTTCAGGATTTGGCACCATAAACCTATTCTTCTCATTAGGATACATGATATTGACGCTA
1 CATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTT
* * * * * *
1394496 TGGTTTCGCAACAAAGGCTTTCTTCTTTCCA--ATTTTTG-TAAATTCTAAGTTCGTGCCTCATA
66 TGGTTTCGCAAGAAA-GC-TT-TTCTTCCCACCATTTTTGATAAA-TCAAAGTTCGTCCCTTAAA
* * *
1394558 TGAGACAAACAT-AGATTCT-AGTAA-TGATCTT
127 TAAGACAAACATGA-ATTCTCA--AACTAATCTC
* * * * * * * * * * * *
1394589 TATTCATTTT--GTGATAAGGCACTATAAACAGATTCTCCGCATTATGATAAATGACATTGATGA
1 CATTC-TTTTCAG-GATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGC
** * * * * * * **** ** * *
1394652 TTTTCTTTTGGATGGAAATCTTTTCTTTGCC-CTATTACCCATAAAATCAAAGTTTATCCCCTGA
64 TTTGGTTTCGCA-AGAAAGCTTTTC-TTCCCACCATTTTTGAT-AAATCAAAGTTCGTCCCTTAA
* * * *
1394716 ATAAGACAAGCATCAATTCTAATAAC-AGTCTC
126 ATAAGACAAACATGAATTCTCA-AACTAATCTC
* * * * * * * *
1394748 CATTCCTTTCAAGATTGGGAAGCCA-AAACA-CGT-TGCCTTCATTAGGATACACAACATTGATG
1 CATTCTTTTCAGGATTAGGCA-CCATAAACATAGTCT-TC-TCATTAGGATACACGATATTGATG
* * * * * *
1394810 CTTTGATGTCGCAAGAAAAGCTTTTCTTCTCACCTTTTTTGATAGAATCAAAGTTTGTCTCTTAA
63 CTTTGGTTTCGCAAG-AAAGCTTTTCTTCCCACCATTTTTGATA-AATCAAAGTTCGTCCCTTAA
* * *
1394875 ATAAGAC-AATATGAATATCT-ATAA-TAAACCC
126 ATAAGACAAACATGAAT-TCTCA-AACTAATCTC
* * *
1394906 CATTCTTTTCAGGATTAGGCACTATAAACATTGTCTTCTCATTAGGATACATGATATCT-A--CT
1 CATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATAT-TGATGCT
* ** *** * * *
1394968 TTGGTTTCGCAACAAAGGGTTTCTTCTTTCCAATTTTTG-TAAACTCTAAGTTCGTGCCTCAAAT
65 TTGGTTTCGCAAGAAAGCTTTTCTTCCCACC-ATTTTTGATAAA-TCAAAGTTCGTCCCTTAAAT
* * ** * *
1395032 GAGACAAACATGGATTCTTGTAA-TGATCTT
128 AAGACAAACATGAATTC-TCAAACTAATCTC
* * * * **
1395062 CATTCTTTT-ATGA-TAGGGCACTAT-AA-ATAGT-TCTCTACATTAGGATAAATGACGTTGATG
1 CATTCTTTTCAGGATTA-GGCACCATAAACATAGTCT-TCT-CATTAGGATACACGATATTGATG
* ** * * * * * *
1395122 ATTTTCTTTTGCATGGAAATCTTTTC-T-CTACCTAATTATCT-ATAAAATCAAAGTTCATCCCT
63 CTTTGGTTTCGCA-AGAAAGCTTTTCTTCCCACC--ATT-TTTGAT-AAATCAAAGTTCGTCCCT
* * * * * *
1395184 TGAATAAGAGAAGCATCG-ATTCTCCCAAC-AGTTTC
123 TAAATAAGACAAACAT-GAATTCT-CAAACTAATCTC
* * * * * * * **
1395219 CGTTCTTTTCAAGATTAGGAAGCCA-AAACACA-T-TGCCATCATTAGGATATATGGCATTGATG
1 CATTCTTTTCAGGATTAGGCA-CCATAAACATAGTCT-TC-TCATTAGGATACACGATATTGATG
* * * * * * * * **
1395281 CTTTGGTGTCTCAAGAAAAGCATTTCTTCTCGCCGTTTTTGATAGAATCAAGGTTTGTCTTTTTA
63 CTTTGGTTTCGCAAG-AAAGCTTTTCTTCCCACCATTTTTGATA-AATCAAAGTTCGTC-CCTTA
* * *
1395346 AA-AAGACAAATATGAATACTCATACTAATC-C
125 AATAAGACAAACATGAATTCTCAAACTAATCTC
* *
1395377 TTATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATAATGATGCT
1 -CATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCT
1395442 TTGG
65 TTGG
1395446 AATCGCAACA
Statistics
Matches: 6238, Mismatches: 1872, Indels: 1302
0.66 0.20 0.14
Matches are distributed among these distances:
141 2 0.00
142 3 0.00
143 14 0.00
144 75 0.01
145 2 0.00
146 1 0.00
147 1 0.00
148 1 0.00
150 3 0.00
152 1 0.00
153 12 0.00
154 26 0.00
155 197 0.03
156 255 0.04
157 566 0.09
158 2338 0.37
159 2033 0.33
160 499 0.08
161 65 0.01
162 141 0.02
163 3 0.00
ACGTcount: A:0.31, C:0.20, G:0.15, T:0.35
Consensus pattern (157 bp):
CATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTT
TGGTTTCGCAAGAAAGCTTTTCTTCCCACCATTTTTGATAAATCAAAGTTCGTCCCTTAAATAAG
ACAAACATGAATTCTCAAACTAATCTC
Found at i:1395706 original size:476 final size:476
Alignment explanation
Indices: 1393511--1402662 Score: 8437
Period size: 476 Copynumber: 19.2 Consensus size: 476
1393501 TTCATTTTGT
* *** * * * * * *
1393511 GATTAGGCACTATAAACACCTTCTCCTCACTAGGATACATGATTTTGACGCTTTAGTTTCGCAAC
1 GATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAC
** * * * *
1393576 AAAGGCTTTCTTC-CCCCAAATTGTTGTAAAGTCTATGTTCATGCCACAAATGAGACAAACATGG
66 AAAGGCTTTCTTCTTTCC-AATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGG
** * * * *
1393640 ATTCTAGTAATGATCTTCATTCACTTTGCGATAAGG---GATAAACAGATTCTCCGCAGTAAGAT
130 ATTCTAGTAATGATCTTCATTCTTTTTGTGATAAGGCACTATAAACAGATTCTCCGCATTAGGAT
* * **
1393702 AAATGACATTAATGATTTTCCTTTGCATTAAAATCTTTTCTTTGCCCAATTATCCTTAAAATCAA
195 AAATGACATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCAATTATCCTTAAAATCAA
* ** *
1393767 AGTTCATCCTTTGAATAAGGGAAGCATCGATTCACGTAACAGTCTCCATTCTTTTCAAGATTGGG
260 AGTTCATCCCTTGAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGG
1393832 AAGCCAAAACACATTG-------T--G------GACATTGATGCTTTGGTGT-TGCAAGAAAAGC
325 AAGCCAAAACACATTGCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCT-CAAGAAAAGC
* *
1393881 TTTTCTTTTCGCCCTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAAC-
389 TTTTCTTCTCGCCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAT-ACT
* * * ** *
1393945 CACACCAATACCCATTCCTGCCAC
453 CACACTAATCCCCATTCTTTTCAG
* * *
1393969 GATTAGGCACCATAAACATAGTCTTCTCATTAGGGTACACGATATTGATGCTCTGGTTTTGCAAC
1 GATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAC
*** * * * *
1394034 AAAGGCTTTCTTCCCACCAATTGTTGTAAAGTCTAAGTTGGTG-CTATAAATGAGACAAATGA-G
66 AAAGGCTTTCTTCTTTCCAATTTTTGTAAAGTCTAAGTTCGTGCCT-CAAATGAGACAAA-CATG
* *
1394097 GATTCTAGTAAT-A--TTCATTCTTTTTGTGATAAGGCAATATAAACAGTTTCTCCGCATTAGGA
129 GATTCTAGTAATGATCTTCATTCTTTTTGTGATAAGGCACTATAAACAGATTCTCCGCATTAGGA
* * ** *
1394159 TAAAAGACGTTGACAATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCAATTATCCTTGAAATCA
194 TAAATGACATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCAATTATCCTTAAAATCA
* *
1394224 AAGTTCATCCCTTGAATAAGACAAGCATCGATTATCGTAACAGTCTCCATTCTTTTTAAGATTGG
259 AAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGG
* ** *
1394289 GATGCCAAAACACATTGCCTTCATTAGGATACACAACATTGATGCTTTGGTGTCGT-AAGAAAGG
324 GAAGCCAAAACACATTGCCTTCATTAGGATACATGACATTGATGCTTTGGTGTC-TCAAGAAAAG
* ** * *
1394353 CTTTTATTGC-CATCATTTTTGATAGAATCAAAAGTTTGTCTTTTAAATAAGACAAACATGAATA
388 CTTTTCTT-CTCGCCGTTTTTGATAGAATC-AAAGTTTGTCTCTTAAATAAGACAAACATGAATA
*
1394417 CTCACACTAATCCCCGTTCTTTTCAG
451 CTCACACTAATCCCCATTCTTTTCAG
* * * * * *
1394443 GATTTGGCACCATAAACCTATTCTTCTCATTAGGATACATGATATTGACGCTATGGTTTCGCAAC
1 GATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAC
* * *
1394508 AAAGGCTTTCTTCTTTCCAATTTTTGTAAATTCTAAGTTCGTGCCTCATATGAGACAAACATAGA
66 AAAGGCTTTCTTCTTTCCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGA
* * *
1394573 TTCTAGTAATGATCTTTATTCATTTTGTGATAAGGCACTATAAACAGATTCTCCGCATTATGATA
131 TTCTAGTAATGATCTTCATTCTTTTTGTGATAAGGCACTATAAACAGATTCTCCGCATTAGGATA
* * * *
1394638 AATGACATTGATGATTTTCTTTTGGATGGAAATCTTTTCTTTGCCCTATTACCCATAAAATCAAA
196 AATGACATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCAATTATCCTTAAAATCAAA
* * * ** *
1394703 GTTTATCCCCTGAATAAGACAAGCATCAATTCTAATAACAGTCTCCATTCCTTTCAAGATTGGGA
261 GTTCATCCCTTGAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGA
* ** * *
1394768 AGCCAAAACACGTTGCCTTCATTAGGATACACAACATTGATGCTTTGATGTCGCAAGAAAAGCTT
326 AGCCAAAACACATTGCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCTCAAGAAAAGCTT
* * *
1394833 TTCTTCTCACCTTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAC-AATATGAATA-TCTA
391 TTCTTCTCGCCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTC-A
* * *
1394896 TAATAAACCCCATTCTTTTCAG
455 CACTAATCCCCATTCTTTTCAG
* * *
1394918 GATTAGGCACTATAAACATTGTCTTCTCATTAGGATACATGATATCT-A--CTTTGGTTTCGCAA
1 GATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATAT-TGATGCTTTGGTTTCGCAA
* *
1394980 CAAAGGGTTTCTTCTTTCCAATTTTTGTAAACTCTAAGTTCGTGCCTCAAATGAGACAAACATGG
65 CAAAGGCTTTCTTCTTTCCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGG
* * * * **
1395045 ATTCTTGTAATGATCTTCATTC-TTTTATGATAGGGCACTATAAATAG-TTCTCTACATTAGGAT
130 ATTCTAGTAATGATCTTCATTCTTTTTGTGATAAGGCACTATAAACAGATTCTCCGCATTAGGAT
* * * *
1395108 AAATGACGTTGATGATTTTCTTTTGCATGGAAATCTTTTCTCTACCTAATTAT-CTATAAAATCA
195 AAATGACATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCAATTATCCT-TAAAATCA
* ** * * *
1395172 AAGTTCATCCCTTGAATAAGAGAAGCATCGATTCTCCCAACAGTTTCCGTTCTTTTCAAGATTAG
259 AAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGG
* * *
1395237 GAAGCCAAAACACATTGCCATCATTAGGATATATGGCATTGATGCTTTGGTGTCTCAAGAAAAGC
324 GAAGCCAAAACACATTGCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCTCAAGAAAAGC
* * * *
1395302 ATTTCTTCTCGCCGTTTTTGATAGAATCAAGGTTTGTCTTTTTAAA-AAGACAAATATGAATACT
389 TTTTCTTCTCGCCGTTTTTGATAGAATCAAAGTTTGTC-TCTTAAATAAGACAAACATGAATACT
* **
1395366 CATACTAATCCTTATTCTTTTCAG
453 CACACTAATCCCCATTCTTTTCAG
* **
1395390 GATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATAATGATGCTTTGGAATCGCAAC
1 GATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAC
* * * * * * * *
1395455 AGAGGCTTTCCTCTTTCCAATTTTTGTAAATTCTATGTTCGTGCCTCAAGTAAGACAAACCTAGA
66 AAAGGCTTTCTTCTTTCCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGA
** * * * *
1395520 GCCTAGTAACGATCTTCATTCTTTTTGTGATGAGGCACTATAAATAGATTCTCCGCATTAGGGTA
131 TTCTAGTAATGATCTTCATTCTTTTTGTGATAAGGCACTATAAACAGATTCTCCGCATTAGGATA
* * *
1395585 AATGACATTGATGATTTTCTTTTGTATGGAAATCTTTTCTTTGCCCAATTATCCTTTAAATCAGA
196 AATGACATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCAATTATCCTTAAAATCAAA
* * * * * * *
1395650 GTTAATCCCCTGAATAAGAAAAGCATCGATTCTCGCAACAGTCTCGATTTTTTTCAAGGTTGGGA
261 GTTCATCCCTTGAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGA
* * * * *
1395715 AGCCAAAACGCATTGCCTTCGTTAGGACACATGACATTGATGCTTTAGTGTCGCAAGAAAAGCTT
326 AGCCAAAACACATTGCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCTCAAGAAAAGCTT
* * * * **
1395780 TTCTTC-CTGCCCTTTTTGATAGAATCAAAAGTTTGTCTCTAAAATAAGACACACAAGAACGCTC
391 TTCTTCTC-GCCGTTTTTGATAGAATC-AAAGTTTGTCTCTTAAATAAGACAAACATGAATACTC
**
1395844 ACACTAATATCCATTCTTTTCAG
454 ACACTAATCCCCATTCTTTTCAG
* * * * * * *
1395867 GATCAGGCCCCTTAAACATAGTCTTCTCATTAGGATATACGATATTGATGCTTTGGTTTCACGAT
1 GATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAC
* * * * * ***** * * * * * *
1395932 ATTAGG-ATAC-ACGATATACC-ATAAACATACTATTCTTA-TTAG-G-ATACACGATATTGAGG
66 A-AAGGCTTTCTTC--T-TTCCAATTTTTGTA-AAGTCTAAGTTCGTGCCT-CA--A-A-TGAGA
** * * ** * * * * **
1395991 C---TTTGGTTTCGCAACAAAG-TTTTCTTTCCAATTTT-TG-TAA---A-T-TCTA-AG-TTCG
121 CAAACATGGATTC-TAGTAATGATCTTCATT-C-TTTTTGTGATAAGGCACTATAAACAGATTC-
* * * * ** * ** **
1396043 TGCCTCA-AATGAGACAA--ACA-T-A-GA--TTCTAGT-AAT-GATCTTCATTTT-TTTG--TG
182 T-CCGCATTAGGATA-AATGACATTGATGATTTTCTTTTGCATGGA-AATC-TTTTCTTTGCCCA
* * * ** * * * * *
1396095 ATAAGGCAC-TATAAA-CACA-TTTTTCGCATTAGGATAAATGACATTG-AT-GACTT-TCTTTT
243 ATTA-TC-CTTA-AAATCAAAGTTCATC-CCTT-GAAT-AA-GACA-AGCATCGA-TTCTC-GTA
* *** * * ** * *
1396154 GCA-T-GGAAATCTTTTC---TTTGCCCAAGTATCCTTAAAATCA-A-AG--TTCATCT--GTTG
298 ACAGTCTCCATTCTTTTCAAGATTG-GGAAG---CC--AAAA-CACATTGCCTTCAT-TAGGAT-
** * * * * * ** * **
1396208 A-AT-A-GGTGAAGCTTCGAT-TCTC-ATAACAGTCTCTGTTCATT-TC-AAGATTGGGA-AGCC
354 ACATGACATTGATGCTTTGGTGTCTCAAGAAAAG-CT-T-TTC-TTCTCGCCGTTTTTGATAG--
** * * * *** ** * *
1396265 AA--AACACATTGCCTTCGTTAGGACACATGACATTGATGCTTTAGTGTCACAATAAAAGCTTTC
413 AATCAA-AGTTTGTC-TC-TTA--A-ATAAGACAAACATG-AATA--CTCACACT--AA----TC
* *
1396328 TTCCC-GTCGTTTTTA-
463 --CCCATTC-TTTTCAG
** * * * * * **
1396343 -A-TA-G-A--ATCAAAGTTTGTCTTTTAAATAAGACAAACATGAATACTCACGCTAATCCCCAT
1 GATTAGGCACCAT-AAACATAGTCTTCT-CATTAG--------G-ATA--CACGAT-AT--TGAT
* ** * * * ** * ** * *
1396402 TCTTTTCAGGATTAGGCACCATAA-AC-ATAATC-TTCCCA-TTAGGATACA-T-GATA-TT-GA
50 GC-TTT--GG-TTTCGCAACA-AAGGCTTTCTTCTTTCCAATTTTTG-TAAAGTCTA-AGTTCG-
* **** *** * * * * *
1396459 TGCTTTGGTTTTGCA-ACAAAGGC-TTTCTTCCCACTAATTG-T-TGCAAAGTCTATGTTCGTGC
107 TGC-CT-CAAATG-AGACAAA--CATGGATT-CTAGTAA-TGATCTTC--ATTCT-T-TTTGTG-
* * ** ** * * * **
1396520 CTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATTCTGTTGGTGAT-AAGGCACTATAA
160 AT--AA-G-G-C-ACTAT--AAAC-AG--AT--TC-TC-CGC-ATTAG-GATAAATG-AC-ATTG
** * * * * * * * ** * * ** ***
1396584 ACACATTCTCCTCATTCGAAT-AAAACACATTGATGTTT-TTC--TTTTGCATGGAAATCTTTTT
206 A-TGATT-T--TCTTTTGCATGGAAA-TC-TT-TTCTTTGCCCAATTAT-CCTTAAAATC--AAA
* * * * *
1396645 TTTGCCCGATTTTCCTT-AA-AATGAAAATTCATCCCTTGAATAAGACAAGCATCGATTCTCCTA
261 GTT---C-A--TCCCTTGAATAA-GACAA-GCA--------------------TCGATTCTCGTA
* * * * * * * *
1396708 GCTGTCTCCATTTTTTTCAAGATTAGGAAGCCAAAACACATTGCCATCGTTAGGATATACGACAT
298 ACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTCATTAGGATACATGACAT
** * * *
1396773 TGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCTTACTGTTTTTGATAGAATGAAAGTTTATCT
363 TGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCTCGCCGTTTTTGATAGAATCAAAGTTTGTCT
* * * * * *
1396838 TTTAAAAAAGACAAATATGAATACTCATACTAATCCTCATTCTTTTTAG
428 CTTAAATAAGACAAACATGAATACTCACACTAATCCCCATTCTTTTCAG
* * *
1396887 GATTAGGCACCACAAACATAGTCTTCTCATTAGGATACACGATATTTGATGCATTGGTTTTGCAA
1 GATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATA-TTGATGCTTTGGTTTCGCAA
*** * * *
1396952 CAAAGGCTTTCTTCCCACCAATTGTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAATATGG
65 CAAAGGCTTTCTTCTTTCCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGG
* * * * * * *
1397017 ATTCTAGTAATGATCTTCCTTCTTTTGGTAATAAGGCATTATAAACACATTCTCCTCATTCGGAT
130 ATTCTAGTAATGATCTTCATTCTTTTTGTGATAAGGCACTATAAACAGATTCTCCGCATTAGGAT
** * * * *
1397082 AAAACACATTGATGTTTTTCTTTTGCATGGAAATCTTTTCTTTGCCCGATTTTCCTTAAAATGAA
195 AAATGACATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCAATTATCCTTAAAATCAA
* * * * * *
1397147 AATTCATCCCTTGAATAAGACAAGCATCGATTCTCCTAGCTGTCTCCGTTCTTTTCAAGATTAGG
260 AGTTCATCCCTTGAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGG
* * * **
1397212 AAGCCAAAACACATTGCCATCGTTAGGATATACAACATTGATGCTTTGGTGTCTCAAGAAAAGCT
325 AAGCCAAAACACATTGCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCTCAAGAAAAGCT
* * * *
1397277 TTTCTTCTCGCCGTTTTTGATAGAATCAAAGTTTATCTTTTAAAAAAGACAAATATGAATACTCA
390 TTTCTTCTCGCCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCA
* * *
1397342 TACTAATCCTCATTCTTTTTAG
455 CACTAATCCCCATTCTTTTCAG
* * * **
1397364 GATTAGGCACCACAAACATAGTATTCTCATTAGGATACACGATATTTGATGCTTTGGTTTTGTGA
1 GATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATA-TTGATGCTTTGGTTTCGCAA
* * * *
1397429 CAAAGGCTTTCTTCTTTACCAATTTTTGTAAAATCTATGTTCATGCCTCAAATGAGTCAAACATG
65 CAAAGGCTTTCTTCTTT-CCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATG
* * *
1397494 GATTCTTGTAATGATCTTCATTCTTTTTGTGATAAGGCACTATAAACAGTTTCTTCGCATTAGGA
129 GATTCTAGTAATGATCTTCATTCTTTTTGTGATAAGGCACTATAAACAGATTCTCCGCATTAGGA
* * *
1397559 TAAATGACATTGATGATTTTTTTTTGCTTGGAAATCTTTTCTTTGCCCAATTATCTTTAAAATCA
194 TAAATGACATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCAATTATCCTTAAAATCA
* * *
1397624 AAGTTCATCCCTTGAATAAGAGAAGCATTGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTAG
259 AAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGG
* * * * * *
1397689 GAAGCCAAAACACATTACCTTTATTAGGACACACGA-ATTGAAGCTTTGGTGTCGT-AGGAAAAG
324 GAAGCCAAAACACATTGCCTTCATTAGGATACATGACATTGATGCTTTGGTGTC-TCAAGAAAAG
* * * ** * *
1397752 CTTGTCTTCCCGCCATATTTTG-GGGAATCAAAGTTTGTCTTTTAAATAAGACAAATATGAATAC
388 CTTTTCTTCTCGCCGT-TTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAC
* *
1397816 TCAAACTAATCCCCACTCTTTTCAG
452 TCACACTAATCCCCATTCTTTTCAG
*** *
1397841 GATTAGGCACCATAAACATAGTCCTT-TCATTCTAATACACGATATTTGATGCTTTGGTTTTGCA
1 GATTAGGCACCATAAACATAGT-CTTCTCATTAGGATACACGATA-TTGATGCTTTGGTTTCGCA
* * * * * *
1397905 ATAAAGGTTTTCTTCTTTCCAATTTTTATAAAGTCTATGTTCGTACCTCAAAAGAGACAAACATG
64 ACAAAGGCTTTCTTCTTTCCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATG
* * * * * * * *
1397970 GATTCTTGTAATGATCTCCGTTCTTTTTGTAATAAGGCACTATAAATAGTTTCTGCACATTAGGA
129 GATTCTAGTAATGATCTTCATTCTTTTTGTGATAAGGCACTATAAACAGATTCTCCGCATTAGGA
* * * * **
1398035 TAAATGAGATTGATGATTTTCTTTTACATGAAAATCTTTTCTTTGCCCAGTTATTTTTAAAATCA
194 TAAATGACATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCAATTATCCTTAAAATCA
* * * * * *
1398100 AAGTTCATCCCTTGAATAAGAGAAACCTTGATTCTCATAACAGTCTCCATTCTTTTCGAGATTGG
259 AAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGG
* * * * *
1398165 AAAGCCAAAACACATAGCCTTCATTAGGATACACGACACTAATGCTTTGGTGT-TGCAAGAAAAG
324 GAAGCCAAAACACATTGCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCT-CAAGAAAAG
* * * *
1398229 CTTTTCTTCCCACCGTTTTTAATAGAATCAAA--AT-TCTCTTAAATAAGACAAACATGAATACT
388 CTTTTCTTCTCGCCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACT
**
1398291 CACACTAATTTCCATTCTTTTCAG
453 CACACTAATCCCCATTCTTTTCAG
* * * *
1398315 GATTAGGCACCATAAATATAGTCTTCTTATTAGGATACACGATATTGACGCTTTGGATTCGCAAC
1 GATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAC
* * * * * * *
1398380 AGAGGATTTTCTTCTTTCTAATTTTTGTAAATTCTAAGTTCGTGCCTCAAATGACACAAACCTAG
66 AAAGG-CTTTCTTCTTTCCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGG
* ** *
1398445 ATTCTAGTAATGATCTTCATTCTTTTTGTGATAAGGCACTATAAACACATTCTCTTCATT-CGAG
130 ATTCTAGTAATGATCTTCATTCTTTTTGTGATAAGGCACTATAAACAGATTCTCCGCATTAGGA-
** * * *
1398509 TAAAACAACATTGATGTTTTTCTTTTTCATGGAAATCTTTTCTTTGCCTAATTAT-CTATAAAAT
194 T-AAATGACATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCAATTATCCT-TAAAAT
* * * * * *
1398573 CAAAGTTCATCCCTTGAATAAGAGAAGCATCGATTCTCCTGACAGTTTTCGTTCTTTTCAAGATT
257 CAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATT
* * *
1398638 AGGAAGCCAAAACACATTGCCATCATTAGGATATATGACATTGATGCTTTGGTGTCTCAAGAAAA
322 GGGAAGCCAAAACACATTGCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCTCAAGAAAA
* * * *
1398703 GCATTTCTTCTCGCCGTTTTTGATAGAATCAAGGTTTGTCTTTTTAAA-AAGACAAATATGAATA
387 GCTTTTCTTCTCGCCGTTTTTGATAGAATCAAAGTTTGTC-TCTTAAATAAGACAAACATGAATA
* **
1398767 CTCATACTAATCCTTATTCTTTTCAG
451 CTCACACTAATCCCCATTCTTTTCAG
* * ** *
1398793 GATTAGGCACCGTAAACATAGTCTTCTCATTAGGATACACGATAATGATGCTTTGGAATCACAAC
1 GATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAC
* * * * * * *
1398858 AGAGGCTTTCTTCTTTCCAATTTTTGTAAATTCTATGTTCGTACCTCAAATAAGACAAACCTAGA
66 AAAGGCTTTCTTCTTTCCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGA
** * * *
1398923 GCCTAGTAATGATCTTCATTCTTTTTGTGATGAGGCACTATAAATAGATTCTCCGCATTAGGGTA
131 TTCTAGTAATGATCTTCATTCTTTTTGTGATAAGGCACTATAAACAGATTCTCCGCATTAGGATA
1398988 AATGACATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCAATTATCCTTAAAATCAAA
196 AATGACATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCAATTATCCTTAAAATCAAA
* * * * * *
1399053 GTTCATCCCCTGAATAAGAAAAGCATCGATTCCCGCAACAGTCTCGATTCTTTTCAAGGTTGGGA
261 GTTCATCCCTTGAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGA
* * * * * *
1399118 AGCCAAAACGCATTGCCTTCGTTAGGACACAAGACATTGATGCTTTAGTGTCGCAAGAAAAGCTT
326 AGCCAAAACACATTGCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCTCAAGAAAAGCTT
* * *
1399183 TTCTTCCTAC-CC-TTTTTGATAGAATCAAAAGTTTGTCTCTAAAATAAGACAAACTTGAACACT
391 TTCTT-CT-CGCCGTTTTTGATAGAATC-AAAGTTTGTCTCTTAAATAAGACAAACATGAATACT
*
1399246 CACACTAATCTCCATTCTTTTCAG
453 CACACTAATCCCCATTCTTTTCAG
* * * * * *
1399270 GATCAGGCACCATAAACATAGACTTGTCATTAGGATATACGATATTGATGCTTTGATTTCACAAC
1 GATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAC
* ** * * * *
1399335 AAAGGCTTTTTTC-CACCAATTATTGAAAAGTCTAAGTTCGTACCTCAAATGAGACAAATATGGA
66 AAAGGCTTTCTTCTTTCCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGA
* * * * *
1399399 TTCTTGTAATGATCGTCATTCTTTTTCTAATAAGGCACTATAAAAAGATTCTCCGCATTAGGATA
131 TTCTAGTAATGATCTTCATTCTTTTTGTGATAAGGCACTATAAACAGATTCTCCGCATTAGGATA
**
1399464 AATGATGTTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCAATTATCCTTAAAATCAAA
196 AATGACATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCAATTATCCTTAAAATCAAA
* *
1399529 GTTCATCCCTTGAATAAGACAAGCATCGATTCTCGTATCAGTCTCCATTCTTTTCAGGATTGGGA
261 GTTCATCCCTTGAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGA
* * *
1399594 AGCCAAAACTCATTGCCTTAATTAGGATACATGACATTGATGCTTGGGTGTCTCAAGAAAAGCTT
326 AGCCAAAACACATTGCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCTCAAGAAAAGCTT
* * * *
1399659 TTCTTCTTGCCGTTTTTGATAGAATCAAAGTTTTTCTCTTAAATAAGCCAAACATAAATACTCAC
391 TTCTTCTCGCCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCAC
*
1399724 ACTAATCCCCATTCTTTTTAG
456 ACTAATCCCCATTCTTTTCAG
* * * * * *
1399745 GATTAGGCACCATAAACATACTATTCTTATTAGGATACACGATATTGAGGCTTTCGTTTCGCAAT
1 GATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAC
* * * *
1399810 AGAGTCTTTCTTCTTTCCAATTTTTGTAAATTCTAAGTTCGTGCCTCAAATGAGACAAACATAGA
66 AAAGGCTTTCTTCTTTCCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGA
*
1399875 TTCTAGTAATGATCTTCATT-TTTTTGTGATAAGGCACTATAAACACATT-TCTCGCATTAGGAT
131 TTCTAGTAATGATCTTCATTCTTTTTGTGATAAGGCACTATAAACAGATTCTC-CGCATTAGGAT
* *
1399938 AAATGACATTGATGACTTTCTTTTGCATGGAAATCTTTTCTTTGCCCAGTTATCCTTAAAATCAA
195 AAATGACATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCAATTATCCTTAAAATCAA
* ** * * *
1400003 AGTTCATCCCTTGAATAGGTGAAGCATCGATTCTCATAACAGTCTCCGTTCATTTCAAGATTGGG
260 AGTTCATCCCTTGAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGG
* * * *
1400068 AAGCCAAAACACATTGCCTTCGTTAGGACACATGACATTGATGCTTTAGTGTCACAAGAAAAGCT
325 AAGCCAAAACACATTGCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCTCAAGAAAAGCT
* * * *
1400133 TTTCTTCCCGTCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGATAAACATGAATGCTCA
390 TTTCTTCTCGCCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCA
* * *
1400198 CACTAATCCCTATTCTTTTTAA
455 CACTAATCCCCATTCTTTTCAG
* * * *
1400220 GATTAGGCACCGTAAACATAGTCTTTTCATTAGGATACACGTTATTGATGCTTTGGTTTTGCAAC
1 GATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAC
* *
1400285 AAAGGCTTTCTTCTTTCCAATTTTTGTAAATTCTAAGTTCGTGCCTCAAATGAGACAAACATAGA
66 AAAGGCTTTCTTCTTTCCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGA
* * * * * * *
1400350 TTCTGGTAATGATCTTCATTTTTTTTTGTAATAGGGCACTATAAACACAGTCTCCGCATTAGGGT
131 TTCTAGTAATGATCTTCA-TTCTTTTTGTGATAAGGCACTATAAACAGATTCTCCGCATTAGGAT
*
1400415 AAATGACATTGACGATTTTCTTTTGCATGGAAA-CTTTGTC-TTGCCCAATTATCCTTAAAATCA
195 AAATGACATTGATGATTTTCTTTTGCATGGAAATCTTT-TCTTTGCCCAATTATCCTTAAAATCA
* * * * * * *
1400478 AAGTTCATCCCCTAAATAAGATAAGCATCGAATCTCATAACAGTCTCCATCCATTTCAAGATTGG
259 AAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGG
* * * * *
1400543 GAAGCCAAAAAACATTGCCTTCGTTAAGACACATGACATTGATGCTTTGGTGTCGCAAGAAAAGC
324 GAAGCCAAAACACATTGCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCTCAAGAAAAGC
* * * * * *
1400608 TTTTCTTCTTGCCCTTATTAATAGAATCAAAAGTTTGTCTCTTAAATAAGTCAAACGTGAATACT
389 TTTTCTTCTCGCCGTTTTTGATAGAATC-AAAGTTTGTCTCTTAAATAAGACAAACATGAATACT
* *
1400673 CACACTAATCCCCATTGTTTTCAA
453 CACACTAATCCCCATTCTTTTCAG
* * * * *
1400697 GATTAGGCACCATAAACCTAGTCTTCTCTTTAGGATGCATGATATTGATGCTTTGGTCTCGCAAC
1 GATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAC
* * * * *
1400762 AAAGACTTTCTTCTTTCCAATTTTTGTAAATTCTAAGTTCGTGCCCCAAATGAGACAAATATAGA
66 AAAGGCTTTCTTCTTTCCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGA
* * * *
1400827 TTCTAGTAATGATCTTCATT-TTTTTTTGTACTAAGGCACTATAAACACATTCTCCACATTAGGG
131 TTCTAGTAATGATCTTCATTCTTTTTGTG-A-TAAGGCACTATAAACAGATTCTCCGCATTAGGA
* * * * *
1400891 TAAATGACATTGACGATTTTTTTTTGCATAGAAATTTTTTC-TTGCCCAATTATCCTTAAAATGA
194 TAAATGACATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCAATTATCCTTAAAATCA
* * * * *
1400955 ATGTTCATCCCTTGAATAAGACAAGCATCGATTCTCTTAATAGTCTCCGTTCTTTTCAAGATTAG
259 AAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGG
* ** * * * *
1401020 CAAGCCAAAACATGTTGCCATCATTAGGATTCACGACATTGATGCTTTGGTGTCTAAAGAAAAGC
324 GAAGCCAAAACACATTGCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCTCAAGAAAAGC
* * * *
1401085 TTTTCTTCCCGCCATTTTTGATAGAATCAAAGTTTGTCTTTTAAATAAGACAAATATGAATACTC
389 TTTTCTTCTCGCCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTC
* * *
1401150 ATACTAATCCCAATTCTTTTTAG
454 ACACTAATCCCCATTCTTTTCAG
* * * *
1401173 GATTAGGCACCATAAACATTGTCTTCTCATTCGAATACACGATATTTGATGCTTTGGTTTTGCAA
1 GATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATA-TTGATGCTTTGGTTTCGCAA
* * * * ** * *
1401238 GAAAGGCATTCTTCTTTCCAATTTTTTTAAACTCTCTGTTCGTGCCCCAAATGAGACAAATATGG
65 CAAAGGCTTTCTTCTTTCCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGG
* * * * * *
1401303 ATTCTTGT-ATTATCTTCATTCTTTTTGTGATACGGTACTATAAGCACATTCTCCGCATTAGGAT
130 ATTCTAGTAATGATCTTCATTCTTTTTGTGATAAGGCACTATAAACAGATTCTCCGCATTAGGAT
* * * *
1401367 AAACGACATTCATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTAATTATTCTTAAAATCAA
195 AAATGACATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCAATTATCCTTAAAATCAA
* * * * * *
1401432 AGTTCATCTCTTGAATAAGAGAAGCATCGATTCTCATAATAGTCTCAATTCATTTCAAGATTGGG
260 AGTTCATCCCTTGAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGG
* * * * *
1401497 AAGCCAAATCACATTGCCTTCGTTAGGACACACGACATTGATGCTTTGGTGTCGCAAGAAAAGCT
325 AAGCCAAAACACATTGCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCTCAAGAAAAGCT
* *
1401562 TTTCTTCTTGCCCTTTTTGATAGAATCAAAAGTTTGTCTCTTAAATAAGACAAACATGAATACAT
390 TTTCTTCTCGCCGTTTTTGATAGAATC-AAAGTTTGTCTCTTAAATAAGACAAACATGAATAC-T
* *
1401627 -ACACTAATCCCAATTCTTTTCTG
453 CACACTAATCCCCATTCTTTTCAG
* *
1401650 GATTAGGC-CCATAAACATAGTCTTCTCGTTAGGATACACGATATTGAGGCTTTGGTTTCGCAAC
1 GATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAC
* * *
1401714 AAAGGCTTTCTTCTTTCCAATTTTTGTAAAGTCTATGTTCGTGCCACAAATCAGACAAACATGGA
66 AAAGGCTTTCTTCTTTCCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGA
* * *
1401779 TTCTAGTAATGATCTTCATTCTTTTTGTGATTAGGCACTATAAACACATTCTCCACATTAGGATA
131 TTCTAGTAATGATCTTCATTCTTTTTGTGATAAGGCACTATAAACAGATTCTCCGCATTAGGATA
* * *
1401844 AAAGACATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCAATTTTCCTTAAAATCAAA
196 AATGACATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCAATTATCCTTAAAATCAAA
* * *
1401909 GTTCATCCCCTGAATAAGACAAGCATCGATTCTGGTAACAGTCTCCATTCCTTTCAAGATTGGGA
261 GTTCATCCCTTGAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGA
* *
1401974 AGCCAAAACACATTGCCTTCATTAGGATACATGACATTGATGCTTGGGTGTCTCAAGAAAAGATT
326 AGCCAAAACACATTGCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCTCAAGAAAAGCTT
* * * * *
1402039 TTCTTCCCGACGTTTTTGATAGAATCAAAGTTTGTCCCTTAAATTAGCCAAACATGAATACT---
391 TTCTTCTCGCCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCAC
1402101 ACT-AT--CCA-TC--TTCA-
456 ACTAATCCCCATTCTTTTCAG
* * *
1402115 GA-TA-GTA-CAT--A-ATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGATTTTGCAAC
1 GATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAC
* *** * * * * *
1402174 AAAGGCTTTCATCCCACCAATTGTTGTAAAGTCTAGGTTCATGCCTCAAATGATAGAAACATGGA
66 AAAGGCTTTCTTCTTTCCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGA
* * * * * *
1402239 TTCTAGTAATGATATTCATTTTTTTTGTGATAAGGCA-TGATAAACACAATCTCCTCAATAGGAT
131 TTCTAGTAATGATCTTCATTCTTTTTGTGATAAGGCACT-ATAAACAGATTCTCCGCATTAGGAT
* * ** *
1402303 AAATGACATTGATGATTTTTTTTTGCATGGAAATCTTTTCCTTGCCCTTTTTTCCTTAAAATCAA
195 AAATGACATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCAATTATCCTTAAAATCAA
* * * * * * * * *
1402368 TGATCATCCCTTGAATATGATAAACATCGATTCTCATAGCAGTCCCCATTCATTTCAAGATTGGG
260 AGTTCATCCCTTGAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGG
* * * ** * *
1402433 AAGCCAAAACACGTTGCCTTCATTAGGATACAAGACATTAATGCTTTAATGCCCCAAGAAAAGCT
325 AAGCCAAAACACATTGCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCTCAAGAAAAGCT
* * * *
1402498 TTTCCTCTCGCCCTTTTTGGTAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACCCA
390 TTTCTTCTCGCCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCA
* * * *
1402563 TACCAACCCCCATTCTTTTTAG
455 CACTAATCCCCATTCTTTTCAG
* *
1402585 GATTAAGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTCTGGCTTT-GCAA
1 GATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGG-TTTCGCAA
1402649 CAAAGGCTTTCTTC
65 CAAAGGCTTTCTTC
1402663 CCACCAATTA
Statistics
Matches: 7142, Mismatches: 1209, Indels: 668
0.79 0.13 0.07
Matches are distributed among these distances:
455 18 0.00
457 2 0.00
458 264 0.04
459 5 0.00
460 384 0.05
461 13 0.00
462 18 0.00
463 24 0.00
464 18 0.00
465 31 0.00
466 33 0.00
467 13 0.00
468 10 0.00
469 13 0.00
470 5 0.00
471 240 0.03
472 114 0.02
473 185 0.03
474 442 0.06
475 1018 0.14
476 1795 0.25
477 1666 0.23
478 377 0.05
479 22 0.00
480 5 0.00
481 7 0.00
483 4 0.00
484 6 0.00
485 5 0.00
486 9 0.00
487 6 0.00
488 10 0.00
489 7 0.00
490 10 0.00
491 2 0.00
493 1 0.00
495 2 0.00
497 7 0.00
498 6 0.00
499 3 0.00
500 1 0.00
502 1 0.00
503 7 0.00
504 4 0.00
505 14 0.00
506 8 0.00
507 1 0.00
508 4 0.00
509 3 0.00
510 5 0.00
511 6 0.00
512 3 0.00
513 7 0.00
514 4 0.00
516 4 0.00
517 2 0.00
518 2 0.00
519 2 0.00
520 1 0.00
521 4 0.00
522 2 0.00
523 1 0.00
524 1 0.00
525 3 0.00
527 3 0.00
528 15 0.00
529 5 0.00
530 10 0.00
531 14 0.00
532 13 0.00
533 19 0.00
534 8 0.00
535 10 0.00
536 2 0.00
537 9 0.00
538 1 0.00
539 3 0.00
540 1 0.00
543 8 0.00
544 2 0.00
545 3 0.00
546 2 0.00
547 1 0.00
548 5 0.00
549 12 0.00
550 1 0.00
551 5 0.00
552 2 0.00
553 7 0.00
554 16 0.00
555 9 0.00
556 11 0.00
557 8 0.00
558 11 0.00
559 21 0.00
560 10 0.00
561 5 0.00
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.35
Consensus pattern (476 bp):
GATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAC
AAAGGCTTTCTTCTTTCCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGA
TTCTAGTAATGATCTTCATTCTTTTTGTGATAAGGCACTATAAACAGATTCTCCGCATTAGGATA
AATGACATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCAATTATCCTTAAAATCAAA
GTTCATCCCTTGAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGA
AGCCAAAACACATTGCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCTCAAGAAAAGCTT
TTCTTCTCGCCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCAC
ACTAATCCCCATTCTTTTCAG
Found at i:1397440 original size:159 final size:158
Alignment explanation
Indices: 1396757--1397443 Score: 361
Period size: 159 Copynumber: 4.3 Consensus size: 158
1396747 ATTGCCATCG
* *** ** *
1396757 TTAGGATATACGACATTGATGCTTTGGTGTCTCAAGA-AAAGCTTTTCTTCTTACTGTTTTTGAT
1 TTAGGATACACGACATTGATGCTTTGGT-T-TTGTGACAAAGCTTTTCTTCTCGCCGTTTTTGAT
* *
1396821 AGAATGAAAGTTTATCTTTTAAAAAAGACAAATATGAATACTCATACTAATCCTCATTCTTTTTA
64 AGAATCAAAGTTTATCTCTTAAAAAAGACAAATATGAATACTCATACTAATCCTCATTCTTTTTA
* *
1396886 GGATTAGGCACCACAAACATAGTCTTCTCA
129 GGATTAGGCACCACAAACACAGTCTCCTCA
* * ** * * * *
1396916 TTAGGATACACGATATTTGATGCATTGGTTTTGCAACAAAGGC-TTTCTTCCCACCAATTGTTG-
1 TTAGGATACACGACA-TTGATGCTTTGGTTTTGTGACAAA-GCTTTTCTTCTCGCC-GTTTTTGA
* * * ** * * * * * *
1396979 TA-AAGTCTAAGTTTGTGC-CTCAAATGAGACAAATATGGATTCT-AGTAATGATCTTCCTTC-T
63 TAGAA-TCAAAGTTTAT-CTCTTAAAAAAGACAAATATGAATACTCA-TACTAATCCTCATTCTT
* ** * *
1397040 TTT-GGTAATAAGGCATTATAAACACATTCTCCTCA
125 TTTAGG--ATTAGGCACCACAAACACAGTCTCCTCA
* * * ** * * *
1397075 TTCGGATAAAAC-ACATTGATGTTTTTCTTTTGCATG-GAAATCTTTTCTT-T-GCCCGATTTTC
1 TTAGGAT-ACACGACATTGATGCTTTGGTTTTG--TGACAAAGCTTTTCTTCTCG-CCG-TTTTT
** * * * * * * * ** * * * *
1397136 CTTAAAATGAAAATTCATCCCTTGAATAAGACAAGCATCG-ATTCTCCTAGCT-GT-CTCCGTTC
61 GATAGAATCAAAGTTTATCTCTTAAAAAAGACAAATAT-GAATACTCATA-CTAATCCT-CATTC
* * * *
1397198 TTTTCAAGATTAGGAAGCCA-AAACACA-T-TGCCATCG
123 TTTTTAGGATTAGGCA-CCACAAACACAGTCT-CC-TCA
* * ***
1397234 TTAGGATATACAACATTGATGCTTTGGTGTCTCAAGA-AAAGCTTTTCTTCTCGCCGTTTTTGAT
1 TTAGGATACACGACATTGATGCTTTGGT-T-TTGTGACAAAGCTTTTCTTCTCGCCGTTTTTGAT
*
1397298 AGAATCAAAGTTTATCTTTTAAAAAAGACAAATATGAATACTCATACTAATCCTCATTCTTTTTA
64 AGAATCAAAGTTTATCTCTTAAAAAAGACAAATATGAATACTCATACTAATCCTCATTCTTTTTA
* * *
1397363 GGATTAGGCACCACAAACATAGTATTCTCA
129 GGATTAGGCACCACAAACACAGTCTCCTCA
*
1397393 TTAGGATACACGATATTTGATGCTTTGGTTTTGTGACAAAGGC-TTTCTTCT
1 TTAGGATACACGACA-TTGATGCTTTGGTTTTGTGACAAA-GCTTTTCTTCT
1397444 TTACCAATTT
Statistics
Matches: 377, Mismatches: 109, Indels: 84
0.66 0.19 0.15
Matches are distributed among these distances:
157 3 0.01
158 45 0.12
159 270 0.72
160 55 0.15
161 4 0.01
ACGTcount: A:0.30, C:0.18, G:0.15, T:0.37
Consensus pattern (158 bp):
TTAGGATACACGACATTGATGCTTTGGTTTTGTGACAAAGCTTTTCTTCTCGCCGTTTTTGATAG
AATCAAAGTTTATCTCTTAAAAAAGACAAATATGAATACTCATACTAATCCTCATTCTTTTTAGG
ATTAGGCACCACAAACACAGTCTCCTCA
Found at i:1408514 original size:42 final size:42
Alignment explanation
Indices: 1408467--1408585 Score: 193
Period size: 42 Copynumber: 2.8 Consensus size: 42
1408457 TTCTTCTCCC
* *
1408467 CTCCTCCTGTCATCCCTCCTCTCTCTATTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
*
1408509 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
* *
1408551 CTCCTCCTATCATCCCTCCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
1408586 TTGAGGGCTA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 71 1.00
ACGTcount: A:0.08, C:0.46, G:0.03, T:0.43
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
Found at i:1408526 original size:12 final size:11
Alignment explanation
Indices: 1408500--1408575 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
1408490 TCTATTATCT
*
1408500 CTCCTGTCTCTC
1 CTCCTATCTC-C
1408512 CTCCTATCATCC
1 CTCCTATC-TCC
1408524 CTCCTATCT--
1 CTCCTATCTCC
*
1408533 CTACTATCT--
1 CTCCTATCTCC
*
1408542 CTCCTGTCTCTC
1 CTCCTATCTC-C
1408554 CTCCTATCATCC
1 CTCCTATC-TCC
*
1408566 CTCCTCTCTC
1 CTCCTATCTC
1408576 TTCTTTCTCT
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 3 0.06
12 31 0.58
13 4 0.08
ACGTcount: A:0.09, C:0.49, G:0.03, T:0.39
Consensus pattern (11 bp):
CTCCTATCTCC
Found at i:1408527 original size:24 final size:24
Alignment explanation
Indices: 1408491--1408576 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
1408481 CCTCCTCTCT
* *
1408491 CTATTATCTCTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
* *
1408515 CTATCATCCCTCC--TATCT-CTA
1 CTATCATCCCTCCTGTCTCTCCTC
1408536 CTATC-T--CTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
*
1408557 CTATCATCCCTCCTCTCTCT
1 CTATCATCCCTCCTGTCTCT
1408577 TCTTTCTCTT
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 4 0.08
20 5 0.10
21 14 0.29
22 5 0.10
24 21 0.43
ACGTcount: A:0.10, C:0.45, G:0.02, T:0.42
Consensus pattern (24 bp):
CTATCATCCCTCCTGTCTCTCCTC
Found at i:1408551 original size:18 final size:18
Alignment explanation
Indices: 1408482--1408552 Score: 52
Period size: 18 Copynumber: 3.6 Consensus size: 18
1408472 CCTGTCATCC
* *
1408482 CTCCTCTCTCTATTATCT
1 CTCCTGTCTCTACTATCT
*
1408500 CTCCTGTCTCTCCTCCTATCAT
1 CTCCTG--TCT-CTACTATC-T
*
1408522 CCCTCCTATCTCTACTATCT
1 --CTCCTGTCTCTACTATCT
1408542 CTCCTGTCTCT
1 CTCCTGTCTCT
1408553 CCTCCTATCA
Statistics
Matches: 41, Mismatches: 6, Indels: 12
0.69 0.10 0.20
Matches are distributed among these distances:
18 15 0.37
20 4 0.10
21 13 0.32
22 4 0.10
24 5 0.12
ACGTcount: A:0.10, C:0.44, G:0.03, T:0.44
Consensus pattern (18 bp):
CTCCTGTCTCTACTATCT
Found at i:1411195 original size:477 final size:476
Alignment explanation
Indices: 1410201--1418836 Score: 11073
Period size: 475 Copynumber: 18.2 Consensus size: 476
1410191 GTTTTCATCA
* *
1410201 ATAAACGTAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGTCTTTCT
1 ATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTCT
* *
1410266 TCTTTCAAATTTTTGTAAATTCTAAGTTCGTGCCTCAAATGAGAAAAACATAGATTCTAGTAATG
66 TCTTTCCAATTTTTGTAAATTCTAAGTTCGTGCCTCAAATGAGACAAACATAGATTCTAGTAATG
* * * * ** *
1410331 ATCTTCATT-TTTTTGTCATAAGGCACTATAAACAGATTCTCCTCATTCGGATAAAACACACTGA
131 ATCTTCATTCTTTTTGTGATAAGGCACTATAAACACATTCTCCGCATTAGGATAAATGACATTGA
* * ** * * *
1410395 -CATTTTTCTTTTGCAT-GAAATCTTTTCTTTACCCTGTTTTCCTTAAACTGAAAGTTCATCCCT
196 TGA-TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCAATTATCCTTAAAATCAAAGTTCATCCCT
* * * *
1410458 TGAATAAGTCAAGCATCGATTCTCCTAATAGTCTCCATTCTTTTCAAGATTGTGATGCCAAAACA
260 TGAATAAGACAAGCATCGATTCTCCTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACA
* * * * * *
1410523 CATTGCCTTCGTTAGGGCACACGACAGTGATGTTTTGGTGTCGCAAGAAAAGCTTTTCTTTTTGC
325 CATTGCCTTCGTTAGGACACACGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCTCGC
* * * * * * *
1410588 CCTTTTTAATAGAATCAAAAGTTGGTCTCTTAAATAAGATAACCATGAACACT-TTCACTAATCC
390 CGTTTTTGATAGAATC-AAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCAT-ACTAATCC
* * *
1410652 CCATTCTTTTTAGAATTAGGAACC
453 CCATTCTTTTCAGGATTAGGCACC
* * * * *
1410676 ATAAACATAGTCTTCTCATTAGGATACATGATATTAATGCTTTGGTTTCACAACAAGGGCATTCT
1 ATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTCT
* * * * *
1410741 TCTTTCCAATTTTTGTAAAGTT-TATGTTCGTGCCACAAATGAGACAAACATGGATTCTTGGAAT
66 TCTTTCCAATTTTTGTAAA-TTCTAAGTTCGTGCCTCAAATGAGACAAACATAGATTCTAGTAAT
* * *
1410805 GACCTTCATTCTTTTTGTGATAAGGTACTATAAACACATTCTCCGCATTAGGATAAATGACACTG
130 GATCTTCATTCTTTTTGTGATAAGGCACTATAAACACATTCTCCGCATTAGGATAAATGACATTG
* *
1410870 ATGATTTGCTTTTGCATGGAAATCTTTTCTTTGCCCAATTATCCTTATAATCAAAGTTCATCCCT
195 ATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCAATTATCCTTAAAATCAAAGTTCATCCCT
*
1410935 TGAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACA
260 TGAATAAGACAAGCATCGATTCTCCTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACA
** * * *
1411000 CATTGCCTTAATTAGGATACATGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCTTGC
325 CATTGCCTTCGTTAGGACACACGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCTCGC
* * * * * *
1411065 CGTTTTTGACAGAATCAAAGTTTGTCTTTTAAATAAGACAAATATGAATGCCCATACTAATCCCA
390 CGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCC
*
1411130 ATTCTTTTCAAGATTAGGCACC
455 ATTCTTTTCAGGATTAGGCACC
* * *
1411152 ATAAACATAGTCTTCTGATTAGGATACACGATATTTGATGCTTTGGTTTTGTAACAAAGGCTTTC
1 ATAAACATAGTCTTCTCATTAGGATACACGATA-TTGATGCTTTGGTTTCGCAACAAAGGCTTTC
* * *
1411217 TTCTTTCCAATTTTTGTAAATTCAAAGTTCGTGCCTCAAATGAGATAAACATAGATTCTCGTAAT
65 TTCTTTCCAATTTTTGTAAATTCTAAGTTCGTGCCTCAAATGAGACAAACATAGATTCTAGTAAT
* *
1411282 GATCTTTATTCTTTTTGTGATAAGGCACTATAAACACATTCTCCGAATTAGGATAAATGACATTG
130 GATCTTCATTCTTTTTGTGATAAGGCACTATAAACACATTCTCCGCATTAGGATAAATGACATTG
* * * *
1411347 ATGATTTTCTTTTGCATGGAAATCTTTTCATTGCGCAACTATCCTTAAAATCAAAGTTCATCCCC
195 ATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCAATTATCCTTAAAATCAAAGTTCATCCCT
* * ** ** * *
1411412 TGAATTAGACAAGCATCGATTCTTGC-AACAGTCTCTTTTCCATCCAAGATT-GGAAGCCGAAAC
260 TGAATAAGACAAGCATCGATTC-TCCTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAAC
* * * *
1411475 ACATTGCCTTCATTAGGACACATGACATTGATGCCTGGGTGTCTCAAGAAAAGCTTTTCTTCTCG
324 ACATTGCCTTCGTTAGGACACACGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCTCG
* * * * *
1411540 CCCTTTTTGATAGAATCAAAGTTTGTCTCTAAAATAAGCCAAACATGAAAACTCATGCTAATCCC
389 CCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCC
1411605 CATTCTTTTCAGGATTAGGCACC
454 CATTCTTTTCAGGATTAGGCACC
* * * *
1411628 ATAAACATAGTTTTCTCATTAGGATACACGATATTGAGGCTTTAGTTTCGCAACAAAGTCTTTCT
1 ATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTCT
* *
1411693 TCTTTCAAATTTTTGTAAATTCTAAGTCCGTGCCTCAAATGAGACAAACATAGATTCTAGTAATG
66 TCTTTCCAATTTTTGTAAATTCTAAGTTCGTGCCTCAAATGAGACAAACATAGATTCTAGTAATG
* * * *
1411758 ATCTTCATT-ATTTTGTCATAAGGCACTATAAACACATTCTCCTCATTTGGATAAA-GCACATTG
131 ATCTTCATTCTTTTTGTGATAAGGCACTATAAACACATTCTCCGCATTAGGATAAATG-ACATTG
* * * * * *
1411821 A-CATTTTCTTCTGCA-CGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATAAAAGTTCATCCCT
195 ATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCAATTATCCTTAAAATCAAAGTTCATCCCT
* * * * * *
1411884 TAAATAAGACAAGCATCGATTCTCCTAATAGTCTCTATTCTTCTCAAGATTGTGAAGCAAAAACA
260 TGAATAAGACAAGCATCGATTCTCCTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACA
* * * *
1411949 CATTGCCTTCGTTAGGGCACACGACATTGATGCTTTGGTGTCGCAAGAAAAGCCTTTCTTCTTGC
325 CATTGCCTTCGTTAGGACACACGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCTCGC
* * * * *
1412014 CCTATTTAATAGAATCAAAAGTTTGTCTCTTAAATAAGATAAACATGAATAC-CTTCACTAATCC
390 CGTTTTTGATAGAATC-AAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCAT-ACTAATCC
* *
1412078 CCATTCTTTTCAGAATTAGGCATC
453 CCATTCTTTTCAGGATTAGGCACC
* * * *
1412102 ATAAATATAGTCTTCTCATTAGGATACATGATATTGATGCTTTGGTTTCACAACAAGGGCTTTCT
1 ATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTCT
* * * * * * * *
1412167 TCATTCCAATTTTTGTGAAGTCTATGTTCATGCCACAAATGAGACAAACATGGATTATTA-TAAT
66 TCTTTCCAATTTTTGTAAATTCTAAGTTCGTGCCTCAAATGAGACAAACATAGATT-CTAGTAAT
* * *
1412231 GATCTTCATTCTTTTTGGGATAAGGTACTATAAACACATTCTCCGCATTAGGATAAATGGCATTG
130 GATCTTCATTCTTTTTGTGATAAGGCACTATAAACACATTCTCCGCATTAGGATAAATGACATTG
* * *
1412296 ATGATTTTCTTTTGCATGGAAATCCTCTCTTTGCCCAATTATCCTTATAATCAAAGTTCATCCCT
195 ATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCAATTATCCTTAAAATCAAAGTTCATCCCT
* * *
1412361 TGAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGATTGAGAAGCCAAAACA
260 TGAATAAGACAAGCATCGATTCTCCTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACA
** * * * *
1412426 CATTGCCTTAATTAGGAGACATGACATTGATGCTTGGGTGTCTCAAGAAAAGCTTTTCTTCTTGC
325 CATTGCCTTCGTTAGGACACACGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCTCGC
* * *
1412491 CGTTTTTGATAGAATCAAAGTTTATCTCTTAAATAAGCCAAACATGAATACTCACACTAATCCCC
390 CGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCC
*
1412556 ATCCTTTTCAGGATTAGGCACC
455 ATTCTTTTCAGGATTAGGCACC
* * * * * *
1412578 ATAAACATACTTTTCTCATTAGGATACACGATATTGAGGCTATCGTTTCGCAACAAAGTCTTTCT
1 ATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTCT
* * * * *
1412643 TCTTTCAAATTTTTGTAAATTCTAAGTTCATACCTCAAATGAGACAAACCTAGATTCTGGTAATG
66 TCTTTCCAATTTTTGTAAATTCTAAGTTCGTGCCTCAAATGAGACAAACATAGATTCTAGTAATG
* * *
1412708 ATCTTCATTCTTTTTGTGATAAGGCACTATAAACACATTCTCCGAATTAAGATAAATGACATTGG
131 ATCTTCATTCTTTTTGTGATAAGGCACTATAAACACATTCTCCGCATTAGGATAAATGACATTGA
*
1412773 TGATTTTCCTTTTGCATGGAAATCTTTTCTTTGCCCAATTATCCTTAAAATCAAAGTTCATCCCC
196 TGATTTT-CTTTTGCATGGAAATCTTTTCTTTGCCCAATTATCCTTAAAATCAAAGTTCATCCCT
* ** * * * *
1412838 TGAATAAGACAAGCATCAATTCTTGTAATAGCCTCCATTCCTTCCAAGATT-GGAAGCCAAAACA
260 TGAATAAGACAAGCATCGATTCTCCTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACA
* * * * *
1412902 GATTGCCTTCGTTAGGACACATGACATTGATGCCTGGGTGTCTCAAGAAAAGCTTTTCTTCCCGC
325 CATTGCCTTCGTTAGGACACACGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCTCGC
* * * * * * *
1412967 CCTTTTTGATAGAATCAAAGTTTATCTCTAAAATAAGCCTAACATGTATACTCACACTAATCCCC
390 CGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCC
*
1413032 ATTCTTTTCAGGATTAGGCATC
455 ATTCTTTTCAGGATTAGGCACC
* * * * *
1413054 GTAAACATAGTTTTTTCATTAGGATACACGATATTGAGGCTTTGGTTTCGCAACAAAGTCTTTCT
1 ATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTCT
* * *
1413119 TCTTTCAAATTTTTGTAAATTCTAAATTCGTGCCTCAAATGAGACAAACGTAGATTCTAGTAATG
66 TCTTTCCAATTTTTGTAAATTCTAAGTTCGTGCCTCAAATGAGACAAACATAGATTCTAGTAATG
* * * * * **
1413184 ATGTTCATT-TTTTTGTCATAAGGCACTATAAACACGTTCTCCTCATTCGGATAAAACACATTGA
131 ATCTTCATTCTTTTTGTGATAAGGCACTATAAACACATTCTCCGCATTAGGATAAATGACATTGA
* * * *** * * *
1413248 -AATTTTTCTTTTGCGT-GAAATCTTTTTTTTGCCTTGTTTTCCTTAAACTGAAAGTTCATCCCT
196 TGA-TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCAATTATCCTTAAAATCAAAGTTCATCCCT
* *
1413311 TGAATAAGTCAAGCATCGATTCTCCTAATAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACA
260 TGAATAAGACAAGCATCGATTCTCCTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACA
* *
1413376 CATTGCCTTC-----G---CACGACATTGATGCTTTGGTGT-TGCAAGAAAAGCTTTTGTTCTTG
325 CATTGCCTTCGTTAGGACACACGACATTGATGCTTTGGTGTCT-CAAGAAAAGCTTTTCTTCTCG
* * * * *
1413432 CCCTATTTAATAGAATCAAAAGTTTGTCTCTTAAATAAGATAAACATATGAATACT-TTCACTAA
389 CCGTTTTTGATAGAATC-AAAGTTTGTCTCTTAAATAAGACAAAC--ATGAATACTCAT-ACTAA
*
1413496 TCCCCATTCTTTTCAGAATTAGGCACC
450 TCCCCATTCTTTTCAGGATTAGGCACC
* * * * *
1413523 ATAAACATAGTCTTCTCATTAGGGTACATGATATTGATGTTTTGGTTTCACAACAAGGGCTTTCT
1 ATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTCT
* * * * * * *
1413588 TCTTTCC-ATTTTTGCAAAGTCTATGTTCGTGCCACAAATGAGACAAATATGGATTCTTGTAATG
66 TCTTTCCAATTTTTGTAAATTCTAAGTTCGTGCCTCAAATGAGACAAACATAGATTCTAGTAATG
* * *
1413652 ATCTTCAGTCTTTTTGTGATAAGG-TCTATAAACACATTCTCCGTATTAGGATAAATGACATTGA
131 ATCTTCATTCTTTTTGTGATAAGGCACTATAAACACATTCTCCGCATTAGGATAAATGACATTGA
* * * *
1413716 TGATTTTCTTTTGCAAGAAAATCTTCTCTTTGCCCAATTATCCTTATAATCAAAGTTCATCCCTT
196 TGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCAATTATCCTTAAAATCAAAGTTCATCCCTT
* * *
1413781 GAATAAGACAAGCATCTATTCTCATAACAGTCTCCATTCTTTTAAAGATTGGGAAGCCAAAACAC
261 GAATAAGACAAGCATCGATTCTCCTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACAC
* ** * * * *
1413846 ATTGTCTTAATTAGGATACATGACATTGATGCTTAGGTGTGTCAAGAAAAGCTTTTCTTCTCGCC
326 ATTGCCTTCGTTAGGACACACGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCTCGCC
* * * * *
1413911 GTTTTTTATAGAATCAAAGTTTGTCTCTTAAATAAGCCAAACAAGAATACTCACACAAATCCCCA
391 GTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCA
1413976 TTCTTTTCAGGATTAGGCACC
456 TTCTTTTCAGGATTAGGCACC
* * *
1413997 ATAAACATACTCTTCTCATTAGGATACACGATATTGAGGCTTTGGTTTCGCGACAAAGTG-TTTC
1 ATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAG-GCTTTC
* * * * *
1414061 TTCTTTCAAATTTTTGTAAATTCTAAGTTCATGCCTAAAATGAGACAAACCTAGATTCTGGTAAT
65 TTCTTTCCAATTTTTGTAAATTCTAAGTTCGTGCCTCAAATGAGACAAACATAGATTCTAGTAAT
* * * * *
1414126 GATCTTTATTCTTTTTGTGACAAGGCACTATAAATAGATTCTCCGTATTAGGATAAATGACATTG
130 GATCTTCATTCTTTTTGTGATAAGGCACTATAAACACATTCTCCGCATTAGGATAAATGACATTG
* * *
1414191 ATGATTTTC-TTTGTATGGAAATCTTTTCTTTGCTCAATTATCCTTAAAATCAATGTTCATCCC-
195 ATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCAATTATCCTTAAAATCAAAGTTCATCCCT
* * ** * *
1414254 TAAATAAGAGATTCATCGATTCTCGTAACAGTCTCCATTCATTTCAAGATTGGGAAGCCAAAACA
260 TGAATAAGACAAGCATCGATTCTCCTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACA
* * * *
1414319 CATTGCCTTCGTTAGG--ACACGACATTGATGGTTTGGTGTC-AAACGAAAACCTTTTCTTCCCG
325 CATTGCCTTCGTTAGGACACACGACATTGATGCTTTGGTGTCTCAA-GAAAAGCTTTTCTTCTCG
* * *
1414381 CC-TTTTCTGATATAATCAAAAGTTTATCTCTTAAAT-------A-ATGAATACTCACACTAATC
389 CCGTTTT-TGATAGAATC-AAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATC
*
1414437 CCCATTCATTTCAGGATTAGGCACC
452 CCCATTCTTTTCAGGATTAGGCACC
* *
1414462 ATAAACATAGTCTTCTCATTAGGATACATGATCTTGATGCTTTGGTTTCGCAACAAAGGCTTTCT
1 ATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTCT
* * * * *
1414527 TCTTTCCAATTTTTGTAAATTCTAAGTTTGTACCTCAAATGAGGCAAACATAGATTCTAGCAGTG
66 TCTTTCCAATTTTTGTAAATTCTAAGTTCGTGCCTCAAATGAGACAAACATAGATTCTAGTAATG
* * * * **
1414592 ATCTTCATTTTTTTTGTGATCAGGCACTATAAACACATTCTCCTCCTTAGGATAAAACACATTGA
131 ATCTTCATTCTTTTTGTGATAAGGCACTATAAACACATTCTCCGCATTAGGATAAATGACATTGA
* * * * * *
1414657 -CATTTTTCTTTTGCAT-G-AATCTTTTCTTTACCCTATTTTCCTTAAACTGAAAGTTCATCCCT
196 TGA-TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCAATTATCCTTAAAATCAAAGTTCATCCCT
* *
1414719 CGAATAAGATAAGCATCGATTCTCCTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACA
260 TGAATAAGACAAGCATCGATTCTCCTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACA
* * * * *
1414784 CATTGCCTTCGTTAGGACACACGACATTAATGCTTTGGTGTCGCAAGAAGAGCTTTTCCTCTTGC
325 CATTGCCTTCGTTAGGACACACGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCTCGC
* * * * * *
1414849 CCTTTTTAATTGAATCGAAAGTTTGTCTCTTAAATAAGAAAAACTTGAATACT-TTCACTAATCC
390 CGTTTTTGATAGAATC-AAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCAT-ACTAATCC
* **
1414913 CCATTCTTTTAAAAATTAGGCACC
453 CCATTCTTTTCAGGATTAGGCACC
* *
1414937 ATAAACATAGTCTTCTCATTAGGATACATGATATTGATGCTTTGGTTTTGCAACAAAGGCTTTCT
1 ATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTCT
* * * * *
1415002 TCTTTCCAATTTTTGTAAATTCTATGTTCATGCCTCAAATGCGACGAATATAGATTCTAGTAATG
66 TCTTTCCAATTTTTGTAAATTCTAAGTTCGTGCCTCAAATGAGACAAACATAGATTCTAGTAATG
* * * * * *
1415067 ATCTTTATTCTTTTTGTGGTAAGGCACTATAAACACCTTCTTCGTATTAAGATAAATGACATTGA
131 ATCTTCATTCTTTTTGTGATAAGGCACTATAAACACATTCTCCGCATTAGGATAAATGACATTGA
* *
1415132 TGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCAATTATCCTTAAAATCAAAGTTCATCCCCT
196 TGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCAATTATCCTTAAAATCAAAGTTCATCCCTT
* *
1415197 GAATAAGACAAGCATCGA-T-TCCTAATAGTCTTCATTCTTTTCAAGATTGGGAAGCCAAAACAC
261 GAATAAGACAAGCATCGATTCTCCTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACAC
* * * * * * *
1415260 CTTGCCTTTGTTAGGATACATGACATTGATG-TTTGGAGTCTCAAAAAAAGCTTTTCCTCTCGCC
326 ATTGCCTTCGTTAGGACACACGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCTCGCC
* * * *
1415324 GTTTTTGATAGAATCAAAGTTTGTCTCTTAAATTAGCCAAACGTGAATACTCAAACTAATCCCCA
391 GTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCA
* * *
1415389 TTTTTTTCAGGATTAAGCCCC
456 TTCTTTTCAGGATTAGGCACC
*
1415410 ATAAACATAGTTTTCTCATTAGGATACACGATATTGATGCTTTGGCTTT-GCAACAAAGGCTTTC
1 ATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGG-TTTCGCAACAAAGGCTTTC
* *** * * * ** * * *
1415474 ATCCCACCAATTGTTGTAAAGTT-TGAGTTTGTGTGTCAAATGAGATAAATAT-GAATTCCAGTA
65 TTCTTTCCAATTTTTGTAAA-TTCTAAGTTCGTGCCTCAAATGAGACAAACATAG-ATTCTAGTA
* * **
1415537 ATGATCTTCCTTCTTTTTGTGATATGGCACTATAAACACATTCTCCTG-ATTAGGATAAAACACA
128 ATGATCTTCATTCTTTTTGTGATAAGGCACTATAAACACATTCTCC-GCATTAGGATAAATGACA
** * * * *
1415601 TTGAT-ATTTTTCTTTTGCA-CAAAATCTTTTCTTTGCCCTATTTTCCTTAAACTAAAAGTTCAT
192 TTGATGA-TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCAATTATCCTTAAAATCAAAGTTCAT
** * *
1415664 CCCTTGAGCAAGACAAGCATCGATTCTCCTAAAAGTCTCCATTCTTTTAAAGATTGGGAAGCCAA
256 CCCTTGAATAAGACAAGCATCGATTCTCCTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAA
* * * * *
1415729 AACACATTTGCCATT-GTTAGGATACAACGACCTTGATACTTTGGTCTCTCAAGAAAAGCTTTCC
321 AACACA-TTGCC-TTCGTTAGGACAC-ACGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTC
* * * *
1415793 TTCCCGCCGTTTTTGATAGAATCAAAGTTTGTCTTTTAAAAAAGACAAATATGAATACTCATACT
383 TTCTCGCCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACT
* *
1415858 AATCCCCATTCATTTT-AGGATTAAGCACT
448 AATCCCCATTC-TTTTCAGGATTAGGCACC
* * * * *
1415887 ATAAACATAGTCTTGTTATTAGGATACAAGATATTGATGCTTTGGTTTTGCAACAAAGGCTTTCA
1 ATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTCT
*** * * * * *
1415952 TCCCACCAATTGTTGTAAAGTCTAAGTTCGTGCCTCAAAAGAGACAAATATGGATTCTAGTAATG
66 TCTTTCCAATTTTTGTAAATTCTAAGTTCGTGCCTCAAATGAGACAAACATAGATTCTAGTAATG
* * * * *
1416017 ATCTTCCA-TCTTTTTGTGATATGGCACTATAAATAGATTTTCTGCATTAGGATAAATGACATTG
131 ATCTT-CATTCTTTTTGTGATAAGGCACTATAAACACATTCTCCGCATTAGGATAAATGACATTG
*
1416081 ATGATTTTCTTTTG--TGCGAAAATCTTTTCTTTGCCCAATTATCCTTAAAATCAAAGTTCAACC
195 ATGATTTTCTTTTGCATG-G-AAATCTTTTCTTTGCCCAATTATCCTTAAAATCAAAGTTCATCC
* * *
1416144 CTTAAATAAGACAAGCATCAATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAA
258 CTTGAATAAGACAAGCATCGATTCTCCTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAA
* * * * ** *
1416209 CACGTTGCCATCATTAGGATACACGACATTGATGCTTCCGTGTTTCAAGAAAAGCTTTTCTTC-C
323 CACATTGCCTTCGTTAGGACACACGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCTC
*
1416273 TGCCGTTTTTGATAGAATCAAAGTTTGTC-CTTTAAATAAG-CTAAACATGAATACTCATGCTAA
388 -GCCGTTTTTGATAGAATCAAAGTTTGTCTC-TTAAATAAGAC-AAACATGAATACTCATACTAA
**
1416336 TCCCCATTCTTTTCAGGATTTTGCACC
450 TCCCCATTCTTTTCAGGATTAGGCACC
* *
1416363 ATAAACATAGTCTTCTCATTAGGATACATGATATTGATGCTTTGGTTTTGCAACAAAGGCTTTCT
1 ATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTCT
*** * * * * *
1416428 TCCCACCAATTGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATCCTAGTAATG
66 TCTTTCCAATTTTTGTAAATTCTAAGTTCGTGCCTCAAATGAGACAAACATAGATTCTAGTAATG
* * * * * **
1416493 ATCTTCATT-TTTTTGTGAGAAGGCACTGTAAACACATTCGCCTCATTCGGATAAAACACATTGA
131 ATCTTCATTCTTTTTGTGATAAGGCACTATAAACACATTCTCCGCATTAGGATAAATGACATTGA
* * * *
1416557 TGTTTTTCTTTTGCATGGAAATCTTTTCTTTGCCCGATTTTCCTTAAAATGAAAGTTCATCCCTT
196 TGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCAATTATCCTTAAAATCAAAGTTCATCCCTT
* * * * * *
1416622 GAATAGGACAAGCATCGATTCTCCTAATAGTCTTCATTTTTTTCAAGATTAGGAAGCCAAAAAAC
261 GAATAAGACAAGCATCGATTCTCCTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACAC
* * *
1416687 ATTGCCATT-GTTAGGATACACGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCCCAC
326 ATTGCC-TTCGTTAGGACACACGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCTCGC
* * * * * *
1416751 CGTTTTTGACAGAATCAAAGTTTGTCTTTTAAATAAGACAAATATGAATGCCCATACTAATCCCA
390 CGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCC
*
1416816 ATTCTTTTTAGGATTAGGCACC
455 ATTCTTTTCAGGATTAGGCACC
* *
1416838 ATAAACATAGTCTTCTCATTAGGATACACGATATTTGATGCTTTCGTTTTGCAACAAAGGCTTTC
1 ATAAACATAGTCTTCTCATTAGGATACACGATA-TTGATGCTTTGGTTTCGCAACAAAGGCTTTC
* ** *** * * * ** *
1416903 TTTTTTTGAATTTTTGTAAGGCCTATGTTCGTGGCTCAAATGAGACAAATACGGATTCTTGTAAT
65 TTCTTTCCAATTTTTGTAAATTCTAAGTTCGTGCCTCAAATGAGACAAACATAGATTCTAGTAAT
* *
1416968 GATCTTCATTCTTTTTGTGATAAGGTACTATAAACACATTCTCCGCATTAGGATAAAAGACATTG
130 GATCTTCATTCTTTTTGTGATAAGGCACTATAAACACATTCTCCGCATTAGGATAAATGACATTG
* * *
1417033 ACGATTTTCATTTGCATGGAAATCTTTTCTTTGCCCAATTATCCTTAAAATTAAAGTTCATCCCT
195 ATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCAATTATCCTTAAAATCAAAGTTCATCCCT
* * * * *
1417098 TGAATAGGACAAGCATTGATTCTCGTAACAGTCTCCACTCTTTTCAAGATTGGGAAGCCAAAACG
260 TGAATAAGACAAGCATCGATTCTCCTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACA
* * *
1417163 CATTGCCTTCATTAGGACACATC-ACATTGATGGTTGGGTGTCTCAAGAAAAGCTTTTCTTCTCG
325 CATTGCCTTCGTTAGGACACA-CGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCTCG
* * * *
1417227 CCGTTTTTGATAGAATCAAAGTTCGTCTCTTAAATAAGCCAAAAATGAATACTCACACTAATCCC
389 CCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCC
1417292 CATTCTTTTCAGGATTAGGCACC
454 CATTCTTTTCAGGATTAGGCACC
* * * * *
1417315 ATAAACATAGTCTT-TTATTAGGATACACAATATTGAGGCTTTGGTTTTGCAACAAAGTCTTTCT
1 ATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTCT
* *
1417379 TCTTTCAAATTTTTGTAAATTCTAAGTTCGTGCCTCAAATGAGACAAACCTAGATTCTAGTAATG
66 TCTTTCCAATTTTTGTAAATTCTAAGTTCGTGCCTCAAATGAGACAAACATAGATTCTAGTAATG
* * *
1417444 ATCTTCATTCTTTTTCTGATAAGGCACTACAAACACATTCTCCGCTTTAGGATAAATGACATTGA
131 ATCTTCATTCTTTTTGTGATAAGGCACTATAAACACATTCTCCGCATTAGGATAAATGACATTGA
* *
1417509 TGATTTTCTTTTGCATTGAAATCTTTTCTTTGCCCAATTATCCTTAAAATCAAAGTTCATCCCCT
196 TGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCAATTATCCTTAAAATCAAAGTTCATCCCTT
* * * * *
1417574 GAATAAGACAAGCATCGATTCTCCTAACAGACACCATTCATTTCAAGAATGGGAAGCAAAAACAC
261 GAATAAGACAAGCATCGATTCTCCTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACAC
* * *
1417639 ATTGCCATT-GTTAGGATACACGACATTGACGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCCCGC
326 ATTGCC-TTCGTTAGGACACACGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCTCGC
* * * * * *
1417703 CGTTTTTGACAGAATCAAAGTTTGTCTTTTAAATAAGACAAATATGAATGCCCATACTAATCCCA
390 CGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCC
1417768 ATTCTTTTCAGGATTAGGCACC
455 ATTCTTTTCAGGATTAGGCACC
*
1417790 ATAAACATAGTCTTCTCATTAGGATACACGATATTTGATGCTTTGGTTTTGCAACAAAGGCTTTC
1 ATAAACATAGTCTTCTCATTAGGATACACGATA-TTGATGCTTTGGTTTCGCAACAAAGGCTTTC
* * * * *
1417855 TTCTTTCCAATTTTTGTAAAGTCTATGTTCAGTGCCTCAAATGAGACAAATATGGATTCTTGTAA
65 TTCTTTCCAATTTTTGTAAATTCTAAGTTC-GTGCCTCAAATGAGACAAACATAGATTCTAGTAA
* * * *
1417920 AGATCTTCATTCTTTTTGTGATAAGGTACTATAAACACATTCTCCGTATTAGGATAAATGACGTT
129 TGATCTTCATTCTTTTTGTGATAAGGCACTATAAACACATTCTCCGCATTAGGATAAATGACATT
*
1417985 GATGATTTTCTTTCGCATGGAAATCTTTTCTTTGCCCAATTATCCTTAAAATCAAAGTTCATCCC
194 GATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCAATTATCCTTAAAATCAAAGTTCATCCC
* * * *
1418050 TTGAATAAGTCAAGCATTGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAAC
259 TTGAATAAGACAAGCATCGATTCTCCTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAAC
* * * *
1418115 GCATTGCCTTCCTTAGGACACATC-ACATTGATGGTTGGGTGTCTCAAGAAAAGCTTTTCTTCTC
324 ACATTGCCTTCGTTAGGACACA-CGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCTC
* * * * *
1418179 GCTGTTTTTGATAGAATCAAAGCTTGTCTCTTAAATAGGCCAAACATGAATACTCACACTAAT-C
388 GCCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCC
*
1418243 CCATTCTTTTTAGGATTAGGCACC
453 CCATTCTTTTCAGGATTAGGCACC
* * * * * * *
1418267 ATATACATAGTTTTTTCATTAGGATGCACGATATTGAGGCTTTGGTTTTGCAACAAAGTCTTTCT
1 ATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTCT
* * * * *
1418332 TCTTTCAAATTTTTGTAAATTCTAAGTTTGTGCCTCTAATGAGACAAACCTAGATTCTAGGAATG
66 TCTTTCCAATTTTTGTAAATTCTAAGTTCGTGCCTCAAATGAGACAAACATAGATTCTAGTAATG
* * * *
1418397 ATCTTCATTCTTTTTGTGATAAGGCACTATAAATAGAATCTCCGCAATAGGATAAATGACATTGA
131 ATCTTCATTCTTTTTGTGATAAGGCACTATAAACACATTCTCCGCATTAGGATAAATGACATTGA
* **
1418462 TGATTTTATTTTTTATGGAAATCTTTTCTTTGCCCAATTATCCTTAAAATCAAAGTTCATCCCTT
196 TGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCAATTATCCTTAAAATCAAAGTTCATCCCTT
* * * * *
1418527 GAATAAGAGAAGCATCGATTCTCATAACAGTTTCAATTCATTTCAAGATTGGGAAGCCAAAACAC
261 GAATAAGACAAGCATCGATTCTCCTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACAC
* * *
1418592 ATTGCCTTCGTTAGGACACACAACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTCTTGCC
326 ATTGCCTTCGTTAGGACACACGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCTCGCC
* * * * *
1418657 CTTTTTAATAGAATCACAAGTTTGTCTCTTAAATAAGACAAATATGAATACTTACACTAATCCCC
391 GTTTTTGATAGAATCA-AAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCC
* *
1418722 ACTCTTTTCCGGATTAGGCACC
455 ATTCTTTTCAGGATTAGGCACC
* * * *
1418744 ATAAAC-TAGTCTTCTTATTAGGATACACGATATCGATGCTTTGGTATCGCAACAAAGGGTTTCT
1 ATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTCT
1418808 TCTTTCCAATTTTTGTAAATTCTAAGTTC
66 TCTTTCCAATTTTTGTAAATTCTAAGTTC
1418837 ATCCCTTGAA
Statistics
Matches: 7086, Mismatches: 960, Indels: 229
0.86 0.12 0.03
Matches are distributed among these distances:
464 39 0.01
465 289 0.04
466 59 0.01
467 83 0.01
468 105 0.01
469 219 0.03
471 8 0.00
472 186 0.03
473 426 0.06
474 517 0.07
475 1731 0.24
476 1481 0.21
477 1521 0.21
478 421 0.06
479 1 0.00
ACGTcount: A:0.30, C:0.20, G:0.15, T:0.36
Consensus pattern (476 bp):
ATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTCT
TCTTTCCAATTTTTGTAAATTCTAAGTTCGTGCCTCAAATGAGACAAACATAGATTCTAGTAATG
ATCTTCATTCTTTTTGTGATAAGGCACTATAAACACATTCTCCGCATTAGGATAAATGACATTGA
TGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCAATTATCCTTAAAATCAAAGTTCATCCCTT
GAATAAGACAAGCATCGATTCTCCTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACAC
ATTGCCTTCGTTAGGACACACGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCTCGCC
GTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCA
TTCTTTTCAGGATTAGGCACC
Found at i:1413268 original size:18 final size:18
Alignment explanation
Indices: 1413245--1413279 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
1413235 TAAAACACAT
1413245 TGAAAT-TTTTCTTTTGCG
1 TGAAATCTTTT-TTTTGCG
1413263 TGAAATCTTTTTTTTGC
1 TGAAATCTTTTTTTTGC
1413280 CTTGTTTTCC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.17, C:0.11, G:0.14, T:0.57
Consensus pattern (18 bp):
TGAAATCTTTTTTTTGCG
Found at i:1418922 original size:317 final size:315
Alignment explanation
Indices: 1418514--1419153 Score: 926
Period size: 317 Copynumber: 2.0 Consensus size: 315
1418504 CTTAAAATCA
* ** *
1418514 AAGTTCATCCCTTGAATAAGAGAAGCATCGATTCTCATAACAGTTTCAATTCATTTCAAGATTGG
1 AAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCATAACAGACTCAATTCATTTCAAGATTAG
* * *
1418579 GAAGCCAAAACACATTGCCTTCGTTAGGACACACAACATTGATGCTTTGGTGTCACAAGAAAAGC
66 GAAGCCAAAACACATTACCATCGTTAGGACACACAACATTGATACTTTGGTGTCACAAGAAAAGC
* *
1418644 TTTTCTTCT-TGCCCTTTTTAATAGAATCACAAGTTTGTCTCTTAAATAAGACAAATATGAATAC
131 TTTTCTTCTCT-CCCTTTTTAATAGAATCA-AAGTTTATCTCTTAAATAAGA-AAATAAGAATAC
* * *
1418708 TTACACTAATCCCCACTCTTTTCCGGATTAGGCACCATAAAC-TAGTCTTCTTATTAGGATACAC
193 TCACACTAATCCCCACTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACAC
*
1418772 GAT-ATCGATGCTTTGGTATCGCAACAAAGGGTTTCTTCTTTCCAATTTTTGTAAATTCT
258 GATAAT-GATG-TTTGGTATCGCAACAAAGGCTTTCTTCTTTCCAATTTTTGTAAATTCT
* * *
1418831 AAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCCTAACAGACTCCATTCTTTTCAAGATTAG
1 AAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCATAACAGACTCAATTCATTTCAAGATTAG
* * * *
1418896 GAAGCCAAAACACATTACCATCGTTAGGATACACGACATTGATACTTTGGTGTCGCAAGACAAGC
66 GAAGCCAAAACACATTACCATCGTTAGGACACACAACATTGATACTTTGGTGTCACAAGAAAAGC
* * *
1418961 TTTTCTTCTCTCCCTTTTTGATAGAATCAAAGTTTATCTCTTAAATAAGATAGTAAGAATACTCA
131 TTTTCTTCTCTCCCTTTTTAATAGAATCAAAGTTTATCTCTTAAATAAGAAAATAAGAATACTCA
* * * * * *
1419026 TATTAATCCTCATTCTTTTTAGGATTAGGCACCATAAACATTGTCTTCTCATTAGGATACACGAT
196 CACTAATCCCCACTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGAT
* *
1419091 AATGATGTTTGGTTTTGCAACAAAGGCTTTCTTCTTTCCAATTTTTGTAAATTCT
261 AATGATGTTTGGTATCGCAACAAAGGCTTTCTTCTTTCCAATTTTTGTAAATTCT
*
1419146 AGGTTCAT
1 AAGTTCAT
1419154 GCCACAAATG
Statistics
Matches: 288, Mismatches: 32, Indels: 8
0.88 0.10 0.02
Matches are distributed among these distances:
315 96 0.33
316 47 0.16
317 144 0.50
318 1 0.00
ACGTcount: A:0.31, C:0.20, G:0.14, T:0.35
Consensus pattern (315 bp):
AAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCATAACAGACTCAATTCATTTCAAGATTAG
GAAGCCAAAACACATTACCATCGTTAGGACACACAACATTGATACTTTGGTGTCACAAGAAAAGC
TTTTCTTCTCTCCCTTTTTAATAGAATCAAAGTTTATCTCTTAAATAAGAAAATAAGAATACTCA
CACTAATCCCCACTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGAT
AATGATGTTTGGTATCGCAACAAAGGCTTTCTTCTTTCCAATTTTTGTAAATTCT
Found at i:1418979 original size:158 final size:154
Alignment explanation
Indices: 1418509--1419010 Score: 403
Period size: 159 Copynumber: 3.2 Consensus size: 154
1418499 TTATCCTTAA
* ** * *
1418509 AATCA-AAGTTCATCCCTTGAATAAGAGAAGCATCGATTCTCATAACAGTTTCAATTCATTTCAA
1 AATCACAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTC-TAACAGACTCCATTCTTTTCAA
* * * *
1418573 GATTGGGAAGCCAAAACACATTGCCTTCGTTAGGACACACAACATTGATGCTTTGGTGTCACAAG
65 GATTAGGAAGCCAAAACACATT-CC-TCGTTAGGATACACGACATTGATGCTTTGGTGTCGCAAG
*
1418638 AAAAGCTTTTCTTCTTGCCCTTTTTAATAG
128 -AAAGCTTTTCTTCTT-CCCTTTTT-GTAG
** * * ** * * *
1418668 AATCACAAGTTTGTCTCTTAAATAAGACAAATAT-GAATACT-TACACTA-ATCCCCACTCTTTT
1 AATCACAAGTTCATCCCTTGAATAAGACAAGCATCG-ATTCTCTA-AC-AGA-CTCCATTCTTTT
** * ** * * *
1418730 CCGGATTAGGCA-CCATAAACTAGTC-TT-CTTATTAGGATACACGATATCGATGCTTTGGTATC
62 CAAGATTAGGAAGCCA-AAAC-A--CATTCCTCGTTAGGATACACGACATTGATGCTTTGGTGTC
* ** *
1418792 GCAACAAAGGGTTTCTTCTTTCCAATTTTTGTA-
123 GCAAGAAAGCTTTTCTTC-TTCC-CTTTTTGTAG
*
1418825 AATTC-TAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCCTAACAGACTCCATTCTTTTCA
1 AA-TCACAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT-CTAACAGACTCCATTCTTTTCA
*
1418889 AGATTAGGAAGCCAAAACACATTACCATCGTTAGGATACACGACATTGATACTTTGGTGTCGCAA
64 AGATTAGGAAGCCAAAACACATT-CC-TCGTTAGGATACACGACATTGATGCTTTGGTGTCGCAA
1418954 GACAAGCTTTTCTTCTCTCCCTTTTTGATAG
127 GA-AAGCTTTTCTTCT-TCCCTTTTTG-TAG
* * *
1418985 AATCA-AAGTTTATCTCTTAAATAAGA
1 AATCACAAGTTCATCCCTTGAATAAGA
1419011 TAGTAAGAAT
Statistics
Matches: 260, Mismatches: 57, Indels: 52
0.70 0.15 0.14
Matches are distributed among these distances:
154 1 0.00
155 2 0.01
156 1 0.00
157 53 0.20
158 66 0.25
159 85 0.33
160 48 0.18
161 1 0.00
162 2 0.01
163 1 0.00
ACGTcount: A:0.32, C:0.21, G:0.14, T:0.33
Consensus pattern (154 bp):
AATCACAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCTAACAGACTCCATTCTTTTCAAG
ATTAGGAAGCCAAAACACATTCCTCGTTAGGATACACGACATTGATGCTTTGGTGTCGCAAGAAA
GCTTTTCTTCTTCCCTTTTTGTAG
Found at i:1419065 original size:158 final size:154
Alignment explanation
Indices: 1418586--1419126 Score: 393
Period size: 158 Copynumber: 3.4 Consensus size: 154
1418576 TGGGAAGCCA
* * *
1418586 AAACACATTGCCTTCGTTAGGACACACAACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTT
1 AAACACATT-CC-TCGTTAGGATACACGACATTGATGCTTTGGTGTCGCAAG-AAAGCTTTTCTT
* * * * * *
1418651 CTTGCCCTTTTTAATAGAATCACAAGTTTGTCTCTTAAATAAGACAAATATGAATACTTACACTA
63 CTT-CCCTTTTTGATAGAATCA-AAGTTTATCTCTTAAATAAGACAAGTAAGAATACTCATA-TA
* * *
1418716 ATCCCCACTCTTTTCCGGATTAGGCACCAT
125 ATCCTCATTCTTTTCAGGATTAGGCACCAT
** * * * * **
1418746 AAACTAGTC-TT-CTTATTAGGATACACGATATCGATGCTTTGGTATCGCAACAAAGGGTTTCTT
1 AAAC-A--CATTCCTCGTTAGGATACACGACATTGATGCTTTGGTGTCGCAAGAAAGCTTTTCTT
* * * * * * * * *
1418809 CTTTCCAATTTTTG-TA-AATTCTAAGTTCATCCCTTGAATAAGACAAGCATCG-ATTCTCCTA-
63 C-TTCC-CTTTTTGATAGAA-TCAAAGTTTATCTCTTAAATAAGACAAGTA-AGAATACTCATAT
** * *
1418870 ACAGACTCCATTCTTTTCAAGATTAGGAAGCCA-
124 A-ATCCT-CATTCTTTTCAGGATTAGGCA-CCAT
*
1418903 AAACACATTACCATCGTTAGGATACACGACATTGATACTTTGGTGTCGCAAGACAAGCTTTTCTT
1 AAACACATT-CC-TCGTTAGGATACACGACATTGATGCTTTGGTGTCGCAAGA-AAGCTTTTCTT
*
1418968 CTCTCCCTTTTTGATAGAATCAAAGTTTATCTCTTAAATAAGA-TAGTAAGAATACTCATATTAA
63 CT-TCCCTTTTTGATAGAATCAAAGTTTATCTCTTAAATAAGACAAGTAAGAATACTCATA-TAA
*
1419032 TCCTCATTCTTTTTAGGATTAGGCACCAT
126 TCCTCATTCTTTTCAGGATTAGGCACCAT
* * * * * * *
1419061 AAACA-TTGTCTTCTCATTAGGATACACGATAATGATG-TTTGGTTTTGCAACAAAGGC-TTTCT
1 AAACACAT-TC--CTCGTTAGGATACACGACATTGATGCTTTGGTGTCGCAAGAAA-GCTTTTCT
1419123 TCTT
62 TCTT
1419127 TCCAATTTTT
Statistics
Matches: 291, Mismatches: 64, Indels: 57
0.71 0.16 0.14
Matches are distributed among these distances:
154 1 0.00
155 4 0.01
156 13 0.04
157 70 0.24
158 115 0.40
159 76 0.26
160 8 0.03
161 1 0.00
162 2 0.01
163 1 0.00
ACGTcount: A:0.30, C:0.21, G:0.14, T:0.35
Consensus pattern (154 bp):
AAACACATTCCTCGTTAGGATACACGACATTGATGCTTTGGTGTCGCAAGAAAGCTTTTCTTCTT
CCCTTTTTGATAGAATCAAAGTTTATCTCTTAAATAAGACAAGTAAGAATACTCATATAATCCTC
ATTCTTTTCAGGATTAGGCACCAT
Found at i:1422329 original size:476 final size:474
Alignment explanation
Indices: 1419682--1422999 Score: 4073
Period size: 475 Copynumber: 7.0 Consensus size: 474
1419672 CGCATTAGGA
* * * * *
1419682 TCTTTGCCCAATTATCCATAAAATCAAAGTTCATCCCCTGAATAAGACAAACATTGATTCTCATA
1 TCTTTGCCCAATTATCCTTAAAATCAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCCTA
* * * * * * * * *
1419747 ACAGACTCCATTCATTTCAAGATTAGGAAGCCAGAACACATTGCCTTTGTTAAGACACATGGCAT
66 ACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTCGTTAGGATACACGACAT
* * *
1419812 TGATGCTTTGGTGCCAT-AAGAAAAGCTTTTCTTCTCGCCCTTTTAGATAGAATCAAAAGTTTGT
131 TGATGCTTTGGTGTC-TCAAGAAAAGCTTTTCTTCTCG-TCTTTTTGATAGAATC-AAAGTTTGT
* ** * *
1419876 CTCTTAAATAAGACAGATGTGAATACTCACACTAATCCCCATTCTTTTCAAGATTAGGCACCATA
193 CTCTTAAATAAGACAAACATGAATACTCACACTAATCCCCATTCTTTTCAGGATTAAGCACCATA
* * * * *
1419941 AACATAGT-TTCTCATTTGGATACACAATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTCT
258 AACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTTGCAACAAAGGCTTTCTTCC
** * * * * * *
1420005 TTCCAATAT-TTGTAAATTCTAAGTTCGTGCCTCAAATAAGAGAGACATAGATTCTAGTAATGAT
323 CACCAAT-TGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGAT
* * * * * *
1420069 GTTCATTTTTTTTTGTGATAAGGCACTATAAACACATTCTCCGCATTAGGGT-AATGACATAGAC
387 CTTC-CTTCTTTTTGTGATAAGGCACTATAAACACATTCTCCGCATTAGGATAAATGACATTGAT
* * *
1420133 AATTTTCTTTTGCACAGAAATTTTT
451 ATTTTTCTTTTGCA-TGAAATCTTT
* * * * * **
1420158 TCTTTGCCCAATTATCCTTAAAATCAAAGTACATCCCCTGAATAAGATAAGCCTTGATTCTTATA
1 TCTTTGCCCAATTATCCTTAAAATCAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCCTA
* * * * * * *
1420223 GCAATCTCCATT-TCTTTCGAGATTGGGAAGCCAAAACGCATTACCTTCATTAGGATACATGACA
66 ACAGTCTCCATTCT-TTTCAAGATTGGGAAGCCAAAACACATTGCCTTCGTTAGGATACACGACA
* * * * *
1420287 TTGACGCTTGGGTGTCTCAAGAAAAGCTTTTCTTCTCACTGTTTTTGATAGAATCAACGTTTGTC
130 TTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCTC-GTCTTTTTGATAGAATCAAAGTTTGTC
* * *
1420352 TCTTAAACAA-ACCAAGCTTGAATACTCACACTAATCCCCATTCTTTTCAGGATT-AGACACCAT
194 TCTTAAATAAGA-CAAACATGAATACTCACACTAATCCCCATTCTTTTCAGGATTAAG-CACCAT
* * * *
1420415 --ACAAAGTCTTCTCTTTAGGATACATGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTCTTC
257 AAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTTGCAACAAAGGCTTTCTTC
*** * * * * * * *
1420478 TTTCTAATTTTTGTAAAATCTAAGTTCGTGCCTCAAATAAGATAAACATAGATTCTAGTAATGAT
322 CCACCAATTGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGAT
* * **
1420543 CTTCATT-TTTTTGTGATAAGGCACTATAAACACATTTTCTACATTAGGATAAATGACATTGATG
387 CTTCCTTCTTTTTGTGATAAGGCACTATAAACACATTCTCCGCATTAGGATAAATGACATTGAT-
1420607 ATTTTT-TTTT-CATGGAAATCTTT
451 ATTTTTCTTTTGCAT-GAAATCTTT
* * * * *
1420630 TCTTTCCCCAATTATGCTTAAAATCAATGGTCATCCCTTGAATAAGACAAGCATCGATTCTCGTA
1 TCTTTGCCCAATTATCCTTAAAATCAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCCTA
* ** *
1420695 ATAGTCTCCATT-TCTTTCAAGATTGGGAAAACAAAACACATTGCCTTCGTTAGGATACATGACA
66 ACAGTCTCCATTCT-TTTCAAGATTGGGAAGCCAAAACACATTGCCTTCGTTAGGATACACGACA
* * * * *
1420759 TTGATGCTTAGCTGTCTCAAGAAAAG-TTTTCCTTCCCGCTGTTTTTGATAGAATCAAAGTTTAT
130 TTGATGCTTTGGTGTCTCAAGAAAAGCTTTT-CTTCTCG-TCTTTTTGATAGAATCAAAGTTTGT
* ** * * *
1420823 CTCTTAAATAAG-CTAAACATGAATACTCGTACTAATAATCTGCACTATTTTCAAGATTAAGCAC
193 CTCTTAAATAAGAC-AAACATGAATACTC--AC-ACTAATCCCCATTCTTTTCAGGATTAAGCAC
* * *
1420887 CATAAACATAGTCTTCTCATTAGGATACATGATATTGATGCTTTGGTTTTCCAACAAAGGCTTCC
254 CATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTTGCAACAAAGGCTTTC
* * * *
1420952 ATCCCACCAATTATTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAATTTGGATTCTAGTAAT
319 TTCCCACCAATTGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGTAAT
* * * * **
1421017 GATCTTTCTTCTTTTTGTGATAAGGCTCTATAAACACATTTTCCTCATTAGGATAAAACACATTG
384 GATCTTCCTTCTTTTTGTGATAAGGCACTATAAACACATTCTCCGCATTAGGATAAATGACATTG
*
1421082 ACATTTTTCTTTTGCATGAAATCTTT
449 ATATTTTTCTTTTGCATGAAATCTTT
* * * * * **
1421108 TCATTG-CCATGTTTTCCTTAAACTGAAAGTTCATCCCTCAAATAAGACAAGCATCGATTCTCCT
1 TCTTTGCCCA-ATTATCCTTAAAATCAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCCT
* * * * *
1421172 AACAATCTCCATTCTTTTCAAAATTGGGAAGCTAAAACACATTGTCTTCGTTAGGACACACGACA
65 AACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTCGTTAGGATACACGACA
* * *
1421237 TTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTCCTAC-CCTTTTTGATAGAATCAAAGTTTAT
130 TTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTT-CT-CGTCTTTTTGATAGAATCAAAGTTTGT
* * * * **
1421301 CCCTTAAATAAGGCAAACATAAATACTCACACTAATCCCTATTCTTTTCAGGATTGGGCACCATA
193 CTCTTAAATAAGACAAACATGAATACTCACACTAATCCCCATTCTTTTCAGGATTAAGCACCATA
* * * *
1421366 AACATAGTCTGCTCATTAGGATACACGATATTGATGCTTTGGTTTCG-AACAAAAGCTTTTTTCC
258 AACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTTGCAACAAAGGCTTTCTTCC
* ** * * * *
1421430 CACTAAAAGTTGTAAAGTCTAAGTTCGTGTCTCAAATGGGACAAATTTGGATTCTAGGAATGATC
323 CACCAATTGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATC
* * * * **
1421495 TTCCTTCTTTTTTTGATAAGGCACTATAAATACATTCTCCGCATTAGGATAATTAACATTGATGC
388 TTCCTTCTTTTTGTGATAAGGCACTATAAACACATTCTCCGCATTAGGATAAATGACATTGATAT
*
1421560 TTTTCTTTTGCATTAAAGTCTTT
453 TTTTCTTTTGCATGAAA-TCTTT
* * * *
1421583 TCCTTGACCAATTATCCTTAAAATGAAAGTTCATCCCTCGAATAAGACAAGCATCGATTCT-CTG
1 TCTTTGCCCAATTATCCTTAAAATCAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCCT-
* * *
1421647 AATAGTCTCCATTCTTTTCAAGATTGGGAAGCTAAAACACATTGCCATT-GTTAGGATACACAAC
65 AACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTGCC-TTCGTTAGGATACACGAC
* * *
1421711 ATTGATGCTTTCGTGTCTCAAGAAAAGCTTTTCTTC-CTGTTGTTTTTGATGGAATCAAAGTTTG
129 ATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCTC-G-TCTTTTTGATAGAATCAAAGTTTG
* * * *
1421775 TCTCTTAAATTAGCCAAACATGAATACTCAAACTAATCCCCATTCTTTTCAGGATTAAGCCCCAT
192 TCTCTTAAATAAGACAAACATGAATACTCACACTAATCCCCATTCTTTTCAGGATTAAGCACCAT
* * *
1421840 AAACATAGTCTTCTCCTTAGGATACACGATATTGATGCTTTGGTTTTGGAACAAAGGCTTTCATC
257 AAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTTGCAACAAAGGCTTTCTTC
1421905 CCACCAATTGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGAT
322 CCACCAATTGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGAT
* * * **
1421970 CTTCCTTCCTTTTGTGATATGACACTATAAACACATTCTCCTG-ATTAGGATAAAACACATTGAT
387 CTTCCTTCTTTTTGTGATAAGGCACTATAAACACATTCTCC-GCATTAGGATAAATGACATTGAT
1422034 ATTTTTCTTTTGCATGAAATCTTT
451 ATTTTTCTTTTGCATGAAATCTTT
* * * *
1422058 TCCTTGCCCTATT-TCCCTTAAACTGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCCT
1 TCTTTGCCCAATTAT-CCTTAAAATCAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCCT
*
1422122 AACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCATCGTTAGGATACACGACA
65 AACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTCGTTAGGATACACGACA
* * *
1422187 TTGATGCTTTGGTCTCTCAAGAAAAGCTTTTCTTCTCGTCATTTTTTATAGAATCAAAGTTCTAT
130 TTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCTCGTC-TTTTTGATAGAATCAAAGTT-TGT
* * * * *
1422252 CTTTTCAAA-AAGACAAATATGAATACTCATACTAATCCCCATTCATTTCATGATTAAGCACCAT
193 CTCTT-AAATAAGACAAACATGAATACTCACACTAATCCCCATTCTTTTCAGGATTAAGCACCAT
* *
1422316 AAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTTGCAACAAAGGCATTCATC
257 AAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTTGCAACAAAGGCTTTCTTC
*
1422381 CCACCAATTATTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGAT
322 CCACCAATTGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGAT
* * * * * *
1422446 CTTCCATCTTTTTGTGATATGGCACTATAAACAGATTCTTCGTATTAGGATAAATGACATTGACG
387 CTTCCTTCTTTTTGTGATAAGGCACTATAAACACATTCTCCGCATTAGGATAAATGACATTGA-T
* *
1422511 A-TTTTCTTTGGTATGGAAATCTTT
451 ATTTTTCTTTTGCAT-GAAATCTTT
* * *
1422535 TCTTTGCCCAATTATCCTTAAAATCAAAGTTCATCCCCTGAATAAGACAAGCAACGATTCTCGTA
1 TCTTTGCCCAATTATCCTTAAAATCAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCCTA
* * *
1422600 ACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAATAAATTGCCATCGTTAGGATACACGACAT
66 ACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTCGTTAGGATACACGACAT
* * * * *
1422665 TGATGTTTTCGTGTCTTAAGAAAAGCTTTTCTTCCCGTTGTTTTTGATAGAATCAAAGTTTGTC-
131 TGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCTCG-TCTTTTTGATAGAATCAAAGTTTGTCT
* * * *
1422729 CTTTAAATAAGCCAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTTAGTACCATAA
195 C-TTAAATAAGACAAACATGAATACTCACACTAATCCCCATTCTTTTCAGGATTAAGCACCATAA
* * *
1422794 ACATAGTCTTCTCATTAAGATACATGATATTGATGC-TTGGCTTTGCAACAAAGGCTTTCTTCCC
259 ACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTTGCAACAAAGGCTTTCTTCCC
* * *
1422858 GCCAATTGTTGTAAAGTCTAAGTTCGTGTCTCAAATG-GAACAAATTTGGATTCTAGTAATGATC
324 ACCAATTGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAG-ACAAATATGGATTCTAGTAATGATC
* *
1422922 TTCCTTCTTTTTGTGATAAGGCACTATAAACACATTCTCCGCATTAGGATAATTGACATTGATGT
388 TTCCTTCTTTTTGTGATAAGGCACTATAAACACATTCTCCGCATTAGGATAAATGACATTGATAT
1422987 TTTTCTTTTGCAT
453 TTTTCTTTTGCAT
1423000 TAAAGTTGAA
Statistics
Matches: 2474, Mismatches: 314, Indels: 109
0.85 0.11 0.04
Matches are distributed among these distances:
471 5 0.00
472 232 0.09
473 23 0.01
474 267 0.11
475 747 0.30
476 641 0.26
477 308 0.12
478 240 0.10
479 10 0.00
480 1 0.00
ACGTcount: A:0.31, C:0.20, G:0.14, T:0.35
Consensus pattern (474 bp):
TCTTTGCCCAATTATCCTTAAAATCAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCCTA
ACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTCGTTAGGATACACGACAT
TGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCTCGTCTTTTTGATAGAATCAAAGTTTGTCTC
TTAAATAAGACAAACATGAATACTCACACTAATCCCCATTCTTTTCAGGATTAAGCACCATAAAC
ATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTTGCAACAAAGGCTTTCTTCCCAC
CAATTGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTC
CTTCTTTTTGTGATAAGGCACTATAAACACATTCTCCGCATTAGGATAAATGACATTGATATTTT
TCTTTTGCATGAAATCTTT
Found at i:1423775 original size:13 final size:13
Alignment explanation
Indices: 1423757--1423782 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1423747 CAATTTTTTG
1423757 TGTATCGATACAT
1 TGTATCGATACAT
1423770 TGTATCGATACAT
1 TGTATCGATACAT
1423783 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1426313 original size:13 final size:13
Alignment explanation
Indices: 1426295--1426333 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
1426285 ATAATCACCC
*
1426295 TGTATCGATACAG
1 TGTATCGATACAA
1426308 TGTATCGATACAA
1 TGTATCGATACAA
1426321 TGTATCGATACAA
1 TGTATCGATACAA
1426334 AGAAAAATGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1426344 original size:20 final size:20
Alignment explanation
Indices: 1426319--1426397 Score: 86
Period size: 20 Copynumber: 3.7 Consensus size: 20
1426309 GTATCGATAC
1426319 AATGTATCGATACAAAGAAA
1 AATGTATCGATACAAAGAAA
*
1426339 AATGTATCGATACATAGAATTTCCA
1 AATGTATCGATACAAAGAA-----A
*
1426364 AATGTATCGATACACAGAAA
1 AATGTATCGATACAAAGAAA
*
1426384 CATGTATCGATACA
1 AATGTATCGATACA
1426398 TTTTGGACAT
Statistics
Matches: 51, Mismatches: 3, Indels: 10
0.80 0.05 0.16
Matches are distributed among these distances:
20 32 0.63
25 19 0.37
ACGTcount: A:0.46, C:0.15, G:0.14, T:0.25
Consensus pattern (20 bp):
AATGTATCGATACAAAGAAA
Found at i:1428432 original size:15 final size:15
Alignment explanation
Indices: 1428412--1428442 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
1428402 ATTTTGTTTG
*
1428412 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
1428427 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
1428442 G
1 G
1428443 GACTTTTTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Done.