Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold287
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 796744
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.34
File 1 of 5
Found at i:2593 original size:79 final size:79
Alignment explanation
Indices: 2493--2691 Score: 220
Period size: 79 Copynumber: 2.5 Consensus size: 79
2483 AACGGGGTTG
* * * ** * *
2493 GAGTATCCTCTTGAAAATAACGGGGTTGGAGTATCCCCGGTTGTGAAAAATCGATGATT-GGGAA
1 GAGTATCCCCTCGGAAATAACGGGGTTGGAGTATCCCCAATTATGAAAAATCAAT-ATTCGGGAA
2557 ATAAAATCGGGATTA
65 ATAAAATCGGGATTA
* * * * *
2572 GAGTATCCCCTCGGAAATAACGGGATTGGAGCATCCCTAATTATGAGAAATCAATATTCTGGAAA
1 GAGTATCCCCTCGGAAATAACGGGGTTGGAGTATCCCCAATTATGAAAAATCAATATTCGGGAAA
* * *
2637 TAAAGTCGGGGTTG
66 TAAAATCGGGATTA
** *
2651 GAGTATCCCCTCGGAGGTAATGGGGTTGGAGTATCCCCAAT
1 GAGTATCCCCTCGGAAATAACGGGGTTGGAGTATCCCCAAT
2692 GAAATAACGA
Statistics
Matches: 98, Mismatches: 21, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
78 3 0.03
79 95 0.97
ACGTcount: A:0.31, C:0.16, G:0.28, T:0.26
Consensus pattern (79 bp):
GAGTATCCCCTCGGAAATAACGGGGTTGGAGTATCCCCAATTATGAAAAATCAATATTCGGGAAA
TAAAATCGGGATTA
Found at i:2849 original size:104 final size:101
Alignment explanation
Indices: 2702--3351 Score: 401
Period size: 104 Copynumber: 6.2 Consensus size: 101
2692 GAAATAACGA
* * *
2702 GGTTGGAATATCCTCGATTGTGAAAGATTGGTGTTTTTA-AAATAAAACCGGGGTTGGAGTATCC
1 GGTTGGAGTATCCTCGATTATGAAAAATTGGTG-TTTTAGAAATAAAACCGGGGTTGGAGTATCC
2766 CCGATTAAAGGAAATTTGGTGTTTTGAAAAATAAAACCGG
65 CCGATT-AAGGAAA-TTGGTGTTTTG-AAAATAAAACCGG
* * *
2806 GGTTAGAGTATCCTCGATTATGAAAAATTAGTGTTTTAGAAATAAAATCGGGGTTGGAGTATCCC
1 GGTTGGAGTATCCTCGATTATGAAAAATTGGTGTTTTAGAAATAAAACCGGGGTTGGAGTATCCC
* * *** * * *
2871 CCATTATGAGAAATCAATATTTTGGAAATAAAGCCGG
66 CGATTAAG-GAAATTGGTGTTTTGAAAATAAAACCGG
* **** * * ***** * *
2908 GGTTGGAGTATCCCCTCGGAGGTA--ACGGGGTTGGAGTATCCCCGATGAAATAACGAGGTTGGA
1 GGTTGGAGTAT--CCTC-GA-TTATGA-AAAATTGGTGTTTTAGAAAT-AAA-ACCGGGGTTGGA
* * ** * * *
2971 ATATCCTCGATTGTGAAAGATTGGTGTTTTTAAAATAAAACCGA
59 GTATCCCCGATTAAGGAA-ATTGGTGTTTTGAAAATAAAACCGG
* * * * * *
3015 GGTTGGAGTATCCCCGATTAAAGGAAATTTGGTGTTTTGAAAAATAAAACCGGGGTTAGAGTATC
1 GGTTGGAGTATCCTCGATT-ATGAAAAATTGGTGTTTT-AGAAATAAAACCGGGGTTGGAGTATC
* * *
3080 CCCGATTATGAAAAATTAGTGTTTT-AGAAATAAAACCGG
64 CCCGATTAAG-GAAATTGGTGTTTTGA-AAATAAAACCGG
* * * *** * * *
3119 GGTTGGAGTATCCCCCATTATGAGAAATCAATATTTTGGAAATAAAGCCGGGGTTGGAGTATCCC
1 GGTTGGAGTATCCTCGATTATGAAAAATTGGTGTTTTAGAAATAAAACCGGGGTTGGAGTAT-CC
* ** * * **** *
3184 CTCGGAGGTAACGG-GGTTGGAGTATCCCTAATGAAATAACGG
65 C-C-GA-TTAA-GGAAATTGGTGTTTTGAAAAT-AAA-ACCGG
* * * * *
3226 GGTTGGAGTATCCTCGATTGTGAAAAAGTGGTGTTTTTGGAAATAAAATCGGAGTTGGAGTATCC
1 GGTTGGAGTATCCTCGATTATGAAAAATTGGTG-TTTTAGAAATAAAACCGGGGTTGGAGTATCC
3291 CCGATTAAAGGAAATTGGTGTTTTGAAAATAAAACCGG
65 CCGATT-AAGGAAATTGGTGTTTTGAAAATAAAACCGG
* *
3329 GGTTAGAGTATCCCCGATTATGA
1 GGTTGGAGTATCCTCGATTATGA
3352 GCAATTGAGA
Statistics
Matches: 404, Mismatches: 115, Indels: 55
0.70 0.20 0.10
Matches are distributed among these distances:
102 42 0.10
103 53 0.13
104 136 0.34
105 51 0.13
106 15 0.04
107 81 0.20
108 26 0.06
ACGTcount: A:0.32, C:0.13, G:0.26, T:0.29
Consensus pattern (101 bp):
GGTTGGAGTATCCTCGATTATGAAAAATTGGTGTTTTAGAAATAAAACCGGGGTTGGAGTATCCC
CGATTAAGGAAATTGGTGTTTTGAAAATAAAACCGG
Found at i:2961 original size:28 final size:28
Alignment explanation
Indices: 2905--2981 Score: 82
Period size: 28 Copynumber: 2.8 Consensus size: 28
2895 GAAATAAAGC
*** **
2905 CGGGGTTGGAGTATCCCCTCGGAGGTAA
1 CGGGGTTGGAGTATCCCCGATGAAATAA
2933 CGGGGTTGGAGTATCCCCGATGAAATAA
1 CGGGGTTGGAGTATCCCCGATGAAATAA
* * *
2961 CGAGGTTGGAATATCCTCGAT
1 CGGGGTTGGAGTATCCCCGAT
2982 TGTGAAAGAT
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 41 1.00
ACGTcount: A:0.23, C:0.19, G:0.34, T:0.23
Consensus pattern (28 bp):
CGGGGTTGGAGTATCCCCGATGAAATAA
Found at i:3076 original size:262 final size:261
Alignment explanation
Indices: 2592--3351 Score: 1317
Period size: 262 Copynumber: 2.9 Consensus size: 261
2582 TCGGAAATAA
* * ** * *
2592 CGGGATTGGAGCATCCCTAATTATGAGAAATCAATATTCTGGAAATAAAGTCGGGGTTGGAGTAT
1 CGGGGTTGGAGTATCCCCCATTATGAGAAATCAATATTTTGGAAATAAAGCCGGGGTTGGAGTAT
*
2657 CCCCTCGGAGGTAATGGGGTTGGAGTATCCCCAATGAAATAACGAGGTTGGAATATCCTCGATTG
66 CCCCTCGGAGGTAACGGGGTTGGAGTATCCCCAATGAAATAACGAGGTTGGAATATCCTCGATTG
2722 TGAAAGATTGGTGTTTTTAAAATAAAACCGGGGTTGGAGTATCCCCGATTAAAGGAAATTTGGTG
131 TGAAAGATTGGTGTTTTTAAAATAAAACC-GGGTTGGAGTATCCCCGATTAAAGGAAATTTGGTG
*
2787 TTTTGAAAAATAAAACCGGGGTTAGAGTATCCTCGATTATGAAAAATTAGTGTTTTAGAAATAAA
195 TTTTGAAAAATAAAACCGGGGTTAGAGTATCCCCGATTATGAAAAATTAGTGTTTTAGAAATAAA
*
2852 AT
260 AC
2854 CGGGGTTGGAGTATCCCCCATTATGAGAAATCAATATTTTGGAAATAAAGCCGGGGTTGGAGTAT
1 CGGGGTTGGAGTATCCCCCATTATGAGAAATCAATATTTTGGAAATAAAGCCGGGGTTGGAGTAT
*
2919 CCCCTCGGAGGTAACGGGGTTGGAGTATCCCCGATGAAATAACGAGGTTGGAATATCCTCGATTG
66 CCCCTCGGAGGTAACGGGGTTGGAGTATCCCCAATGAAATAACGAGGTTGGAATATCCTCGATTG
2984 TGAAAGATTGGTGTTTTTAAAATAAAACCGAGGTTGGAGTATCCCCGATTAAAGGAAATTTGGTG
131 TGAAAGATTGGTGTTTTTAAAATAAAACCG-GGTTGGAGTATCCCCGATTAAAGGAAATTTGGTG
3049 TTTTGAAAAATAAAACCGGGGTTAGAGTATCCCCGATTATGAAAAATTAGTGTTTTAGAAATAAA
195 TTTTGAAAAATAAAACCGGGGTTAGAGTATCCCCGATTATGAAAAATTAGTGTTTTAGAAATAAA
3114 AC
260 AC
3116 CGGGGTTGGAGTATCCCCCATTATGAGAAATCAATATTTTGGAAATAAAGCCGGGGTTGGAGTAT
1 CGGGGTTGGAGTATCCCCCATTATGAGAAATCAATATTTTGGAAATAAAGCCGGGGTTGGAGTAT
* * *
3181 CCCCTCGGAGGTAACGGGGTTGGAGTATCCCTAATGAAATAACGGGGTTGGAGTATCCTCGATTG
66 CCCCTCGGAGGTAACGGGGTTGGAGTATCCCCAATGAAATAACGAGGTTGGAATATCCTCGATTG
* * * *
3246 TGAAAAAGTGGTGTTTTTGGAAATAAAATCGGAGTTGGAGTATCCCCGATTAAAGGAAA-TTGGT
131 TGAAAGATTGGTGTTTTT-AAAATAAAACCGG-GTTGGAGTATCCCCGATTAAAGGAAATTTGGT
3310 GTTTTG-AAAATAAAACCGGGGTTAGAGTATCCCCGATTATGA
194 GTTTTGAAAAATAAAACCGGGGTTAGAGTATCCCCGATTATGA
3352 GCAATTGAGA
Statistics
Matches: 477, Mismatches: 18, Indels: 7
0.95 0.04 0.01
Matches are distributed among these distances:
261 37 0.08
262 404 0.85
263 36 0.08
ACGTcount: A:0.32, C:0.13, G:0.27, T:0.28
Consensus pattern (261 bp):
CGGGGTTGGAGTATCCCCCATTATGAGAAATCAATATTTTGGAAATAAAGCCGGGGTTGGAGTAT
CCCCTCGGAGGTAACGGGGTTGGAGTATCCCCAATGAAATAACGAGGTTGGAATATCCTCGATTG
TGAAAGATTGGTGTTTTTAAAATAAAACCGGGTTGGAGTATCCCCGATTAAAGGAAATTTGGTGT
TTTGAAAAATAAAACCGGGGTTAGAGTATCCCCGATTATGAAAAATTAGTGTTTTAGAAATAAAA
C
Found at i:3207 original size:28 final size:29
Alignment explanation
Indices: 3167--3238 Score: 94
Period size: 28 Copynumber: 2.6 Consensus size: 29
3157 GAAATAAAGC
* **
3167 CGGGGTTGGAGTATCCCCT-CGGAGGTAA
1 CGGGGTTGGAGTATCCCCTAAGGAAATAA
*
3195 CGGGGTTGGAGTAT-CCCTAATGAAATAA
1 CGGGGTTGGAGTATCCCCTAAGGAAATAA
3223 CGGGGTTGGAGTATCC
1 CGGGGTTGGAGTATCC
3239 TCGATTGTGA
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
27 4 0.11
28 33 0.87
29 1 0.03
ACGTcount: A:0.22, C:0.18, G:0.36, T:0.24
Consensus pattern (29 bp):
CGGGGTTGGAGTATCCCCTAAGGAAATAA
Found at i:3358 original size:51 final size:51
Alignment explanation
Indices: 2702--3358 Score: 400
Period size: 51 Copynumber: 12.6 Consensus size: 51
2692 GAAATAACGA
* * * *
2702 GGTTGGAATATCCTCGATTGTGA-AAGATTGGTGTTTTTAAAATAAAACCGG
1 GGTTGGAGTATCCCCGATTATGAGAA-ATTGGTGTTTTGAAAATAAAACCGG
*
2753 GGTTGGAGTATCCCCGATTA-AAGGAAATTTGGTGTTTTGAAAAATAAAACCGG
1 GGTTGGAGTATCCCCGATTATGA-GAAA-TTGGTGTTTTG-AAAATAAAACCGG
* * * * *
2806 GGTTAGAGTATCCTCGATTATGAAAAATTAGTGTTTT-AGAAATAAAATCGG
1 GGTTGGAGTATCCCCGATTATGAGAAATTGGTGTTTTGA-AAATAAAACCGG
* *** * * *
2857 GGTTGGAGTATCCCCCATTATGAGAAATCAATATTTTGGAAATAAAGCCGG
1 GGTTGGAGTATCCCCGATTATGAGAAATTGGTGTTTTGAAAATAAAACCGG
* *** * * ***** * *
2908 GGTTGGAGTATCCCCTCGGAGGTA--ACGGGGTTGGAGTATCCCCGATGAAATAACGA
1 GGTTGGAGTAT-CCC-C-GA-TTATGA-GAAATTGGTGTTTTGAAAAT-AAA-ACCGG
* * * * *
2964 GGTTGGAATATCCTCGATTGTGA-AAGATTGGTGTTTTTAAAATAAAACCGA
1 GGTTGGAGTATCCCCGATTATGAGAA-ATTGGTGTTTTGAAAATAAAACCGG
*
3015 GGTTGGAGTATCCCCGATTA-AAGGAAATTTGGTGTTTTGAAAAATAAAACCGG
1 GGTTGGAGTATCCCCGATTATGA-GAAA-TTGGTGTTTTG-AAAATAAAACCGG
* * *
3068 GGTTAGAGTATCCCCGATTATGAAAAATTAGTGTTTT-AGAAATAAAACCGG
1 GGTTGGAGTATCCCCGATTATGAGAAATTGGTGTTTTGA-AAATAAAACCGG
* *** * * *
3119 GGTTGGAGTATCCCCCATTATGAGAAATCAATATTTTGGAAATAAAGCCGG
1 GGTTGGAGTATCCCCGATTATGAGAAATTGGTGTTTTGAAAATAAAACCGG
* *** * * **** *
3170 GGTTGGAGTATCCCCTCGGAGGTA--ACGGGGTTGGAGTATCCCTAATGAAATAACGG
1 GGTTGGAGTAT-CCC-C-GA-TTATGA-GAAATTGGTGTTTTGAAAAT-AAA-ACCGG
* * * * * *
3226 GGTTGGAGTATCCTCGATTGTGAAAAAGTGGTGTTTTTGGAAATAAAATCGG
1 GGTTGGAGTATCCCCGATTATGAGAAATTGGTG-TTTTGAAAATAAAACCGG
* *
3278 AGTTGGAGTATCCCCGATTA-AAGGAAATTGGTGTTTTGAAAATAAAACCGG
1 GGTTGGAGTATCCCCGATTATGA-GAAATTGGTGTTTTGAAAATAAAACCGG
* *
3329 GGTTAGAGTATCCCCGATTATGAGCAATTG
1 GGTTGGAGTATCCCCGATTATGAGAAATTG
3359 AGAAGCTTAA
Statistics
Matches: 453, Mismatches: 117, Indels: 72
0.71 0.18 0.11
Matches are distributed among these distances:
50 4 0.01
51 208 0.46
52 83 0.18
53 92 0.20
54 26 0.06
55 14 0.03
56 26 0.06
ACGTcount: A:0.32, C:0.13, G:0.26, T:0.29
Consensus pattern (51 bp):
GGTTGGAGTATCCCCGATTATGAGAAATTGGTGTTTTGAAAATAAAACCGG
Found at i:4354 original size:55 final size:55
Alignment explanation
Indices: 4271--4426 Score: 190
Period size: 55 Copynumber: 2.8 Consensus size: 55
4261 AAATTGCTAC
*
4271 CTACTGGAGTTGCTGCT-CTCGCTGGAGCTGCTGTTGCGTGCTGGAGCTG-CAGTCG
1 CTACTGGAGTTGCTGCTGCT-GCTGGAGCTGCTGTTGCGTGCTGGAGCTGTC-GCCG
* * *
4326 CTACTGGAGTTGCTGCTGCTGTTGGAGCTGCTGTTCCGTGCTAGAGCTGTCGCCG
1 CTACTGGAGTTGCTGCTGCTGCTGGAGCTGCTGTTGCGTGCTGGAGCTGTCGCCG
** * * * *
4381 CCGCTGGAGCTGGTGCTGCTGCTGGAGCTGCTTTTGCGTGTTGGAG
1 CTACTGGAGTTGCTGCTGCTGCTGGAGCTGCTGTTGCGTGCTGGAG
4427 TCGTTGGCTA
Statistics
Matches: 86, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
55 83 0.97
56 3 0.03
ACGTcount: A:0.08, C:0.24, G:0.37, T:0.30
Consensus pattern (55 bp):
CTACTGGAGTTGCTGCTGCTGCTGGAGCTGCTGTTGCGTGCTGGAGCTGTCGCCG
Found at i:4752 original size:45 final size:48
Alignment explanation
Indices: 4702--4811 Score: 109
Period size: 52 Copynumber: 2.2 Consensus size: 48
4692 TTGCATGCTT
4702 CTGCATGTTTTGT-C-TCCAAT-TGCAATTTTTATTTCCTTTCCCATG
1 CTGCATGTTTTGTCCTTCCAATCTGCAATTTTTATTTCCTTTCCCATG
* * * *
4747 CTGCATTTTTTATTTCCTTTCCCATGCTGCATTTTTTATTTCCTTTCCCATG
1 CTGCA-TGTTT-TGTCC-TTCCAAT-CTGCAATTTTTATTTCCTTTCCCATG
4799 CTGTTCATGTTTT
1 CTG--CATGTTTT
4812 CACGTTTGCA
Statistics
Matches: 51, Mismatches: 5, Indels: 11
0.76 0.07 0.16
Matches are distributed among these distances:
45 5 0.10
46 4 0.08
47 2 0.04
48 1 0.02
50 5 0.10
52 28 0.55
53 4 0.08
54 2 0.04
ACGTcount: A:0.13, C:0.25, G:0.10, T:0.53
Consensus pattern (48 bp):
CTGCATGTTTTGTCCTTCCAATCTGCAATTTTTATTTCCTTTCCCATG
Found at i:4758 original size:26 final size:26
Alignment explanation
Indices: 4722--4801 Score: 151
Period size: 26 Copynumber: 3.1 Consensus size: 26
4712 TGTCTCCAAT
*
4722 TGCAATTTTTATTTCCTTTCCCATGC
1 TGCATTTTTTATTTCCTTTCCCATGC
4748 TGCATTTTTTATTTCCTTTCCCATGC
1 TGCATTTTTTATTTCCTTTCCCATGC
4774 TGCATTTTTTATTTCCTTTCCCATGC
1 TGCATTTTTTATTTCCTTTCCCATGC
4800 TG
1 TG
4802 TTCATGTTTT
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 53 1.00
ACGTcount: A:0.12, C:0.26, G:0.09, T:0.53
Consensus pattern (26 bp):
TGCATTTTTTATTTCCTTTCCCATGC
Found at i:4939 original size:6 final size:6
Alignment explanation
Indices: 4905--4931 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
4895 ATTATTATTT
4905 TTTGAA TTTGAA TTTGAA TTTGAA TTT
1 TTTGAA TTTGAA TTTGAA TTTGAA TTT
4932 TTAATTTTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.30, C:0.00, G:0.15, T:0.56
Consensus pattern (6 bp):
TTTGAA
Found at i:5604 original size:28 final size:28
Alignment explanation
Indices: 5573--5658 Score: 68
Period size: 28 Copynumber: 3.1 Consensus size: 28
5563 GGAGGACTAA
5573 AAAGTGCCACCAACTCGTGTGGGCTTTG
1 AAAGTGCCACCAACTCGTGTGGGCTTTG
** ** * * ***
5601 AAAG-GCGTCCTGCTC-TTTGAGAACTG
1 AAAGTGCCACCAACTCGTGTGGGCTTTG
5627 AAAGGTGCCACCAACTCGTGTGGGCTTTG
1 AAA-GTGCCACCAACTCGTGTGGGCTTTG
5656 AAA
1 AAA
5659 AGAAAAGGCG
Statistics
Matches: 37, Mismatches: 18, Indels: 5
0.62 0.30 0.08
Matches are distributed among these distances:
26 9 0.24
27 8 0.22
28 11 0.30
29 9 0.24
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.24
Consensus pattern (28 bp):
AAAGTGCCACCAACTCGTGTGGGCTTTG
Found at i:5729 original size:62 final size:60
Alignment explanation
Indices: 5553--6040 Score: 504
Period size: 55 Copynumber: 8.4 Consensus size: 60
5543 ATAAAGTGTA
* *
5553 TCCTGCTCTTGGAGGACT-AAAAAGTGCCACCAACTCGTGTGGGCTTTG--A--AAGGCG
1 TCCTGCTCTTTGAGGACTGAAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGAAGGCG
* * * *
5608 TCCTGCTCTTTGAGAACTG-AAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAGGCG
1 TCCTGCTCTTTGAGGACTGAAAAAGTGCCACCAACTTGTGTGGGCTTTG-AAAG-GAAGGCG
*
5669 TCCTGCTCTTTGAGGACTGAAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGAAGGCA
1 TCCTGCTCTTTGAGGACTGAAAAAGTGCCACCAACTTGTGTGGGCTTTGAAA-G-GAAGGCG
* * * *
5731 TCCTGCTCTTTAAGGACT--AAAGGTGCCACCAGCTTGTGTGGGCTTTAAAAGGAAAAGGCG
1 TCCTGCTCTTTGAGGACTGAAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGG--AAGGCG
*
5791 TCTTGCTCTTTGAGGACTAGAAAAA-TGCCACCAACTTGTGTGGGCTTT--AA--AAGGCG
1 TCCTGCTCTTTGAGGACT-GAAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGAAGGCG
* * * *
5847 TCCTACTCTTTGAGGACTAAAAAATTGCCACCAACTTATGTGGGCTTTG--A--AAGGCG
1 TCCTGCTCTTTGAGGACTGAAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGAAGGCG
* * * *
5903 TCCTGCTCTTTGAGGACTG-AAAGGTGCCACCAACTTGTGTGGGCTCTAAAAGGAAAAGGTG
1 TCCTGCTCTTTGAGGACTGAAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGG--AAGGCG
* *
5964 TCCTGCTCTTTGAGGACT-AGAAAA-TGCCACCAACTCGTGTGGG-TTT-TAA--AAGGCG
1 TCCTGCTCTTTGAGGACTGA-AAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGAAGGCG
*
6019 TCCTGTTCTTTGAGGACT-AAAA
1 TCCTGCTCTTTGAGGACTGAAAA
6041 GGGTGAAAGG
Statistics
Matches: 373, Mismatches: 36, Indels: 49
0.81 0.08 0.11
Matches are distributed among these distances:
54 3 0.01
55 96 0.26
56 68 0.18
57 1 0.00
58 2 0.01
59 3 0.01
60 54 0.14
61 68 0.18
62 75 0.20
63 3 0.01
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (60 bp):
TCCTGCTCTTTGAGGACTGAAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGAAGGCG
Found at i:6042 original size:116 final size:113
Alignment explanation
Indices: 5553--6040 Score: 506
Period size: 116 Copynumber: 4.2 Consensus size: 113
5543 ATAAAGTGTA
* * *
5553 TCCTGCTCTTGGAGGACTAAAAAGTGCCACCAACTCGTGTGGGCTTTG-AAAGGCGTCCTGCTCT
1 TCCTGCTCTTTGAGGACTAAAAAGTGCCACCAACTTGTGTGGGCTTGGAAAAGGCGTCCTGCTCT
* *
5617 TTGAGAACT-GAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAGGCG
66 TTGAGGACTAGAAA-ATGCCACCAACTCGTGTGGGCTTT----AGAAAAGGCG
* *
5669 TCCTGCTCTTTGAGGACTGAAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGAAGGCATCC
1 TCCTGCTCTTTGAGGACT-AAAAAGTGCCACCAACTTGTGTGGGC-TTGGAA----AAGGCGTCC
* ** * *
5734 TGCTCTTTAAGGACTA-AAGGTGCCACCAGCTTGTGTGGGCTTTAAAAGGAAAAGGCG
60 TGCTCTTTGAGGACTAGAAAATGCCACCAACTCGTGTGGGCTTT---A-GAAAAGGCG
* * * *
5791 TCTTGCTCTTTGAGGACTAGAAAAATGCCACCAACTTGTGTGGGCTT-TAAAAGGCGTCCTACTC
1 TCCTGCTCTTTGAGGACTA-AAAAGTGCCACCAACTTGTGTGGGCTTGGAAAAGGCGTCCTGCTC
* **
5855 TTTGAGGACTAAAAAATTGCCACCAACTTATGTGGGCTTT-G-AAAGGCG
65 TTTGAGGACTAGAAAA-TGCCACCAACTCGTGTGGGCTTTAGAAAAGGCG
* * *
5903 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTCTAAAAGGAAAAGGTGTCCT
1 TCCTGCTCTTTGAGGACTAAAAAGTGCCACCAACTTGTGTGGGCT-T----GGAAAAGGCGTCCT
*
5968 GCTCTTTGAGGACTAGAAAATGCCACCAACTCGTGTGGG-TTT-TAAAAGGCG
61 GCTCTTTGAGGACTAGAAAATGCCACCAACTCGTGTGGGCTTTAGAAAAGGCG
*
6019 TCCTGTTCTTTGAGGACTAAAA
1 TCCTGCTCTTTGAGGACTAAAA
6041 GGGTGAAAGG
Statistics
Matches: 320, Mismatches: 33, Indels: 38
0.82 0.08 0.10
Matches are distributed among these distances:
111 24 0.08
112 25 0.08
113 1 0.00
115 3 0.01
116 83 0.26
117 56 0.17
118 23 0.07
119 1 0.00
120 2 0.01
121 7 0.02
122 72 0.22
123 23 0.07
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (113 bp):
TCCTGCTCTTTGAGGACTAAAAAGTGCCACCAACTTGTGTGGGCTTGGAAAAGGCGTCCTGCTCT
TTGAGGACTAGAAAATGCCACCAACTCGTGTGGGCTTTAGAAAAGGCG
Found at i:6165 original size:94 final size:95
Alignment explanation
Indices: 5963--6265 Score: 484
Period size: 95 Copynumber: 3.2 Consensus size: 95
5953 AGGAAAAGGT
* * * *
5963 GTCCTGCTCTTTGAGGACTAGAAAA-TGCCACCAACTCGTGTGGGTTTTAAAAGGCGTCCTGTTC
1 GTCCTGCTCTTTGAGGACT-GAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTC
6027 TTTGAGGACTAAAAGGGTGAAAGGAGAGAGC
65 TTTGAGGACTAAAAGGGTGAAAGGAGAGAGC
* *
6058 GTCCTGCTTTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCATCCTGCTCT
1 GTCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCT
* *
6123 TTGAGGAGT-AAAGGGTGAAAGGAGAGAAC
66 TTGAGGACTAAAAGGGTGAAAGGAGAGAGC
*
6152 GTCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTTCTCT
1 GTCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCT
*
6217 TTGGGGACTAAAAGGGTGAAAGGAGAGAGC
66 TTGAGGACTAAAAGGGTGAAAGGAGAGAGC
*
6247 GTCTTGCTCTTTGAGGACT
1 GTCCTGCTCTTTGAGGACT
6266 AGGAAAGTAG
Statistics
Matches: 191, Mismatches: 15, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
94 93 0.49
95 98 0.51
ACGTcount: A:0.26, C:0.18, G:0.30, T:0.26
Consensus pattern (95 bp):
GTCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCT
TTGAGGACTAAAAGGGTGAAAGGAGAGAGC
Found at i:10287 original size:52 final size:52
Alignment explanation
Indices: 10209--10337 Score: 224
Period size: 52 Copynumber: 2.5 Consensus size: 52
10199 CGAAATATGA
*
10209 AAATTTGCCTGCATGTATCGATACA-TTTAATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTTAA-AATGTATCGATACATCTGGGC
10261 AAATTTGCCTGCATGTATCGATACATTTTAAAATGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTTAAAATGTATCGATACATCTGGGC
*
10313 AAAATTGCCTGCATGTATCGATACA
1 AAATTTGCCTGCATGTATCGATACA
10338 AAGATCAGTG
Statistics
Matches: 74, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
52 69 0.93
53 5 0.07
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.33
Consensus pattern (52 bp):
AAATTTGCCTGCATGTATCGATACATTTTAAAATGTATCGATACATCTGGGC
Found at i:10350 original size:52 final size:50
Alignment explanation
Indices: 10208--10357 Score: 187
Period size: 52 Copynumber: 2.9 Consensus size: 50
10198 CCGAAATATG
*
10208 AAAATTTGCCTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGC
1 AAAA-TTGCCTGCATGTATCGATACA--AAATAGTGTATCGATACATCTGGGC
*
10261 AAATTTGCCTGCATGTATCGATACATTTTAAA-A-TGTATCGATACATCTGGGC
1 AAAATTGCCTGCATGTATCGATACA----AAATAGTGTATCGATACATCTGGGC
10313 AAAATTGCCTGCATGTATCGATACAAAGATCAGTGTATCGATACA
1 AAAATTGCCTGCATGTATCGATACAAA-AT-AGTGTATCGATACA
10358 ATGTATCGAT
Statistics
Matches: 88, Mismatches: 3, Indels: 13
0.85 0.03 0.12
Matches are distributed among these distances:
48 2 0.02
49 1 0.01
51 1 0.01
52 76 0.86
53 4 0.05
54 4 0.05
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.32
Consensus pattern (50 bp):
AAAATTGCCTGCATGTATCGATACAAAATAGTGTATCGATACATCTGGGC
Found at i:10364 original size:13 final size:13
Alignment explanation
Indices: 10346--10370 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
10336 CAAAGATCAG
10346 TGTATCGATACAA
1 TGTATCGATACAA
10359 TGTATCGATACA
1 TGTATCGATACA
10371 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:11418 original size:57 final size:54
Alignment explanation
Indices: 11346--11465 Score: 134
Period size: 56 Copynumber: 2.1 Consensus size: 54
11336 TATTTGGGCC
* *
11346 CTTAAAGATGAGAAAAAAGGAGTGTC-ATGTGCTGATTCAAGGCCAGCGTACATTGAA
1 CTTAAAGATGAG--AAAAGG-GTGCCAATATGCTGATTCAAGGCCAGC-TACATTGAA
* * *
11403 CTTAAAGATGGGAAAAGGGTGCCGAATATGCTGATTCAAGGCCAGCTATATTGGA
1 CTTAAAGATGAGAAAAGGGTGCC-AATATGCTGATTCAAGGCCAGCTACATTGAA
11458 CTTTAAAG
1 C-TTAAAG
11466 GTGCCAAGTG
Statistics
Matches: 55, Mismatches: 5, Indels: 7
0.82 0.07 0.10
Matches are distributed among these distances:
54 4 0.07
55 14 0.25
56 26 0.47
57 11 0.20
ACGTcount: A:0.35, C:0.14, G:0.27, T:0.24
Consensus pattern (54 bp):
CTTAAAGATGAGAAAAGGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGAA
Found at i:11644 original size:48 final size:51
Alignment explanation
Indices: 11466--12165 Score: 260
Period size: 50 Copynumber: 14.6 Consensus size: 51
11456 GACTTTAAAG
* ** *
11466 GTGCCAAGTGTGCTGATTGCAA-GCCAGCTAACATTGG-CGTAAAGTGA-GG-T
1 GTGCCAA-TGTGCTGATT-CAAGGCCAGCT-ACATTGGACTTAAAAAGATGGAA
*
11516 GCGCCAATGGTGCTGATTCAAGGCCAGCTACATTTTGGAC-T--AAAGATGGAA
1 GTGCCAAT-GTGCTGATTCAAGGCCAGCTACA--TTGGACTTAAAAAGATGGAA
* *
11567 GTGCCAATGTGCGTGAGTCAA-GCCAGCTACATTGGACTTAAAAAGATGGAG
1 GTGCCAATGTGC-TGATTCAAGGCCAGCTACATTGGACTTAAAAAGATGGAA
*
11618 GTGCC-ATGTGCTG-TTCAAGGCC-GCTACATTGGACTT--AAGGA-GGAA
1 GTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAAAGATGGAA
* *
11663 GGGTCGCAAT-TGCGTGAGTCAA-GCCAGCTACATTGGAC-T--AAAGATGGGATGA
1 GTG-C-CAATGTGC-TGATTCAAGGCCAGCTACATTGGACTTAAAAAGAT-GGA--A
* * * *
11715 ATGCCAATAG-GCTGATTCAAGGCCAACGATATGTGGTACTT---AA-A-GG--
1 GTGCCAAT-GTGCTGATTCAAGGCCAGCTACAT-TGG-ACTTAAAAAGATGGAA
* *
11761 G-CCCAATG-G-GGATTCAAGGCCAGCTACATTGGACCTGT-AAAAGAT-GAA
1 GTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGA-CT-TAAAAAGATGGAA
* * *
11809 GAGCCAATATGCCTGATTCAAGGCCAG--AGCGATTGGGC-T---AA-A--G--
1 GTGCCAATGTG-CTGATTCAAGGCCAGCTA-C-ATTGGACTTAAAAAGATGGAA
11852 GTGCACAATG-GCTGGA-TCAAGGCACAGCTACATTGGACTT--AAAGAT-GAA
1 GTGC-CAATGTGCT-GATTCAAGGC-CAGCTACATTGGACTTAAAAAGATGGAA
* * *
11901 GATGCCAATATGCTGATTGCAAGGCCAGCGATATTGGACTT------A---AA
1 G-TGCCAATGTGCTGATT-CAAGGCCAGCTACATTGGACTTAAAAAGATGGAA
* *
11945 GT-CCGATGTGCTGATTCAAGGCCAGCTACATTGGACTT--AAAGAT-GAG
1 GTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAAAGATGGAA
*
11992 GTGCCAATGGTGCTGA-TCAAGGCCAGCTTACATTGGACGT-AAAAGATGGAAAA
1 GTGCCAAT-GTGCTGATTCAAGGCCAGC-TACATTGGACTTAAAAAGATGG--AA
* * * *
12045 GGTGCACAATATGC-GAATCAAGGCCAGCGATATTGGACTT------A---AA
1 -GTGC-CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAAAGATGGAA
*
12088 GTGCCAATGTGCTTGAGTCAAAGG-CAGCTAC-TTGGACTT--AAAGAT-GAA
1 GTGCCAATGTGC-TGATTC-AAGGCCAGCTACATTGGACTTAAAAAGATGGAA
*
12136 GATGCCAATATGCTGATTCAAGGCCAGCTA
1 G-TGCCAATGTGCTGATTCAAGGCCAGCTA
12166 ATGAGGCATT
Statistics
Matches: 513, Mismatches: 53, Indels: 170
0.70 0.07 0.23
Matches are distributed among these distances:
41 28 0.05
42 38 0.07
43 44 0.09
44 15 0.03
45 17 0.03
46 11 0.02
47 14 0.03
48 67 0.13
49 73 0.14
50 89 0.17
51 53 0.10
52 25 0.05
53 16 0.03
54 19 0.04
55 4 0.01
ACGTcount: A:0.31, C:0.19, G:0.28, T:0.22
Consensus pattern (51 bp):
GTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAAAGATGGAA
Found at i:11699 original size:49 final size:52
Alignment explanation
Indices: 11520--11709 Score: 185
Period size: 48 Copynumber: 3.8 Consensus size: 52
11510 TGAGGTGCGC
* *
11520 CAATGGTGC-TGATTCAAGGCCAGCTACATTTTGGAC-TAAAGATGGAAGTG-C-
1 CAAT-GTGCGTGAGTCAAGGCCAGCTACA--TTGGACTTAAAGATGGAAGGGTCG
11571 CAATGTGCGTGAGTCAA-GCCAGCTACATTGGACTTAAAAAGATGG-A-GGT-G
1 CAATGTGCGTGAGTCAAGGCCAGCTACATTGGACTT--AAAGATGGAAGGGTCG
* * *
11621 CCATGTGC-TG-TTCAAGGCC-GCTACATTGGACTTAAGGA-GGAAGGGTCG
1 CAATGTGCGTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGGAAGGGTCG
11669 CAAT-TGCGTGAGTCAA-GCCAGCTACATTGGAC-TAAAGATGG
1 CAATGTGCGTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGG
11710 GATGAATGCC
Statistics
Matches: 117, Mismatches: 8, Indels: 30
0.75 0.05 0.19
Matches are distributed among these distances:
45 2 0.02
46 5 0.04
47 6 0.05
48 38 0.32
49 25 0.21
50 22 0.19
51 19 0.16
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.23
Consensus pattern (52 bp):
CAATGTGCGTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGGAAGGGTCG
Found at i:11720 original size:97 final size:100
Alignment explanation
Indices: 11518--12042 Score: 307
Period size: 94 Copynumber: 5.5 Consensus size: 100
11508 AGTGAGGTGC
* *
11518 GCCAATGGTGCTGATTCAAGGCCAGCTACATTTTGGACTAAAGATGGAAGTGCCAATGTGCGTGA
1 GCCAATAGTGCTGATTCAAGGCCAGCTACA-TTTGGACTAAAGATGGAAGGGCCAATGTGCGTGA
*
11583 GTCAAGCCAGCTACATTGGACTTAAAAAGATGGAGGT
65 GTCAAGCCAGCTACATTGGACTT-AAAAGATGGAGAT
*
11620 GCC-AT-GTGCTG-TTCAAGGCC-GCTACA-TTGGACTTAAGGA-GGAAGGGTCGCAAT-TGCGT
1 GCCAATAGTGCTGATTCAAGGCCAGCTACATTTGGAC-TAAAGATGGAAGGG-C-CAATGTGCGT
11678 GAGTCAAGCCAGCTACATTGGAC-T-AAAGATGGGATGAAT
63 GAGTCAAGCCAGCTACATTGGACTTAAAAGAT-GGA-G-AT
* * * * * *
11717 GCCAATAG-GCTGATTCAAGGCCAACGATATGTGGTACTTAA-A--G--GGCCCAATG-G-G-GA
1 GCCAATAGTGCTGATTCAAGGCCAGCTACATTTGG-ACTAAAGATGGAAGGGCCAATGTGCGTGA
* *
11773 TTCAAGGCCAGCTACATTGGACCTGTAAAAGATGAAGA-
65 GTCAA-GCCAGCTACATTGGA-CT-TAAAAGATGGAGAT
* * *
11811 GCCAATA-TGCCTGATTCAAGGCCAG--AGCGA-TTGGGCTAAAGGT-GCA----CAATG-GC-T
1 GCCAATAGTG-CTGATTCAAGGCCAGCTA-C-ATTTGGACTAAAGATGGAAGGGCCAATGTGCGT
*
11865 G-GATCAAGGCACAGCTACATTGGACTT-AAAGATGAAGAT
63 GAG-TCAA-GC-CAGCTACATTGGACTTAAAAGATGGAGAT
* * *
11904 GCCAATA-TGCTGATTGCAAGGCCAGCGATA-TTGGACTTAAAG-T-------CCGATGTGC-TG
1 GCCAATAGTGCTGATT-CAAGGCCAGCTACATTTGGAC-TAAAGATGGAAGGGCCAATGTGCGTG
* *
11958 ATTCAAGGCCAGCTACATTGGACTT-AAAGAT-GAGGT
64 AGTCAA-GCCAGCTACATTGGACTTAAAAGATGGAGAT
*
11994 GCCAATGGTGCTGA-TCAAGGCCAGCTTACA-TTGGACGTAAAAGATGGAA
1 GCCAATAGTGCTGATTCAAGGCCAGC-TACATTTGGAC-T-AAAGATGGAA
12043 AAGGTGCACA
Statistics
Matches: 348, Mismatches: 29, Indels: 98
0.73 0.06 0.21
Matches are distributed among these distances:
89 10 0.03
90 19 0.05
91 36 0.10
92 29 0.08
93 43 0.12
94 48 0.14
95 40 0.11
96 16 0.05
97 43 0.12
98 22 0.06
99 20 0.06
100 10 0.03
101 7 0.02
102 5 0.01
ACGTcount: A:0.31, C:0.19, G:0.28, T:0.22
Consensus pattern (100 bp):
GCCAATAGTGCTGATTCAAGGCCAGCTACATTTGGACTAAAGATGGAAGGGCCAATGTGCGTGAG
TCAAGCCAGCTACATTGGACTTAAAAGATGGAGAT
Found at i:11984 original size:91 final size:90
Alignment explanation
Indices: 11376--12018 Score: 420
Period size: 95 Copynumber: 6.7 Consensus size: 90
11366 AGTGTCATGT
* *
11376 GCTGATTCAAGGCCAGCGTACATTGAACTTAAAGATGGGAAAAGGGTGCCGAATATGCTGATTCA
1 GCTGATTCAAGGCCAGC-TACATTGGACTTAAAGAT--G--AA-GATGCC-AATATGCTGATTCA
*
11441 AGGCCAGCTATATTGGACTTTAAAGGTGCCAAGTG
59 AGGCCAGCGATATTGGAC-TTAAAGGT-CCAA-TG
* * *
11476 TGCTGATTGCAA-GCCAGCTAACATTGG-CGTAAAG-TG-AGGTGCGCCAATGGTGCTGATTCAA
1 -GCTGATT-CAAGGCCAGCT-ACATTGGACTTAAAGATGAAGAT--GCCAAT-ATGCTGATTCAA
* * *
11537 GGCCAGCTACATTTTGGACTAAAGATGGAAGTGCCAATG
60 GGCCAGC--GATATTGGACTTAA-A--G--GT-CCAATG
* * * *
11576 TGCGTGAGTCAA-GCCAGCTACATTGGACTTAAAAAGATGGAGGTGCC-ATGTGCTG-TTCAAGG
1 -GC-TGATTCAAGGCCAGCTACATTGGACTT--AAAGATGAAGATGCCAATATGCTGATTCAAGG
* * *
11638 CC-GCTACATTGGACTTAAGGAGGAAGGGTCGCAATT
62 CCAGCGATATTGGACTT----A--AA-GGTC-CAATG
* * *
11674 GCGTGAGTCAA-GCCAGCTACATTGGAC-TAAAGATGGGATGAATGCCAATAGGCTGATTCAAGG
1 GC-TGATTCAAGGCCAGCTACATTGGACTTAAAGAT--GAAG-ATGCCAATATGCTGATTCAAGG
* *
11737 CCAACGATATGTGGTACTTAAAGGGCCCAATG
62 CCAGCGATAT-TGG-ACTTAAA-GGTCCAATG
*
11769 G-GGATTCAAGGCCAGCTACATTGGACCTGTAAAAGATGAAGA-GCCAATATGCCTGATTCAAGG
1 GCTGATTCAAGGCCAGCTACATTGGA-CT-T-AAAGATGAAGATGCCAATATG-CTGATTCAAGG
* ** *
11832 CCAGAGCGATTGGGC-TAAAGGTGCACAATG
62 CCAGCGATATTGGACTTAAAGGT-C-CAATG
11862 GCTGGA-TCAAGGCACAGCTACATTGGACTTAAAGATGAAGATGCCAATATGCTGATTGCAAGGC
1 GCT-GATTCAAGGC-CAGCTACATTGGACTTAAAGATGAAGATGCCAATATGCTGATT-CAAGGC
*
11926 CAGCGATATTGGACTTAAA-GTCCGATG
63 CAGCGATATTGGACTTAAAGGTCCAATG
* *
11953 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATG-AGGTGCCAATGGTGCTGA-TCAAGGCC
1 -GCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAAT-ATGCTGATTCAAGGCC
12016 AGC
64 AGC
12019 TTACATTGGA
Statistics
Matches: 451, Mismatches: 41, Indels: 112
0.75 0.07 0.19
Matches are distributed among these distances:
89 10 0.02
90 10 0.02
91 37 0.08
92 33 0.07
93 44 0.10
94 49 0.11
95 60 0.13
96 23 0.05
97 43 0.10
98 21 0.05
99 27 0.06
100 37 0.08
101 36 0.08
102 15 0.03
103 2 0.00
104 4 0.01
ACGTcount: A:0.30, C:0.19, G:0.29, T:0.23
Consensus pattern (90 bp):
GCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATATGCTGATTCAAGGCCAG
CGATATTGGACTTAAAGGTCCAATG
Found at i:12025 original size:49 final size:49
Alignment explanation
Indices: 11950--12165 Score: 195
Period size: 48 Copynumber: 4.5 Consensus size: 49
11940 TTAAAGTCCG
11950 ATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATG-AGGTGCCA
1 ATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCA
*
11998 ATGGTGCTGA-TCAAGGCCAGCTTACATTGGACGTAAAAGATGGAAAAGGTGCACA
1 AT-GTGCTGATTCAAGGCCAGC-TACATTGGAC-TTAAAGAT-G--AAGGTGC-CA
* * * *
12053 ATATGC-GAATCAAGGCCAGCGATATTGGACTT----A--AA-GTGCCA
1 ATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCA
* *
12094 ATGTGCTTGAGTCAAAGG-CAGCTAC-TTGGACTTAAAGATGAAGATGCCA
1 ATGTGC-TGATTC-AAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCA
*
12143 ATATGCTGATTCAAGGCCAGCTA
1 ATGTGCTGATTCAAGGCCAGCTA
12166 ATGAGGCATT
Statistics
Matches: 136, Mismatches: 12, Indels: 40
0.72 0.06 0.21
Matches are distributed among these distances:
41 7 0.05
42 12 0.09
43 11 0.08
44 4 0.03
46 1 0.01
47 4 0.03
48 27 0.20
49 27 0.20
50 7 0.05
51 1 0.01
52 1 0.01
53 10 0.07
54 20 0.15
55 4 0.03
ACGTcount: A:0.32, C:0.18, G:0.26, T:0.23
Consensus pattern (49 bp):
ATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCA
Found at i:12058 original size:145 final size:139
Alignment explanation
Indices: 11849--12164 Score: 401
Period size: 145 Copynumber: 2.2 Consensus size: 139
11839 GATTGGGCTA
*
11849 AAGGTGCACAATG-GCTGGATCAAGGCACAGC-TACATTGGACTTAAAGATGAAGATGCCAATAT
1 AAGGTGC-CAATGTGCT-GATCAAGGC-CAGCTTACATTGGACTAAAAGATGAAGATGCCAATAT
* * *
11912 GCTGATTGCAAGGCCAGCGATATTGGACTTAAAGT-CCGATGTGC-TGATTC-AAGGCCAGCTAC
63 GC-GAAT-CAAGGCCAGCGATATTGGACTTAAAGTGCCAATGTGCTTGAGTCAAAGG-CAGCTAC
11974 ATTGGACTTAAAGATG
125 -TTGGACTTAAAGATG
*
11990 -AGGTGCCAATGGTGCTGATCAAGGCCAGCTTACATTGGACGTAAAAGATGGAAAAGGTGCACAA
1 AAGGTGCCAAT-GTGCTGATCAAGGCCAGCTTACATTGGAC-TAAAAGAT-G--AAGATGC-CAA
12054 TATGCGAATCAAGGCCAGCGATATTGGACTTAAAGTGCCAATGTGCTTGAGTCAAAGGCAGCTAC
60 TATGCGAATCAAGGCCAGCGATATTGGACTTAAAGTGCCAATGTGCTTGAGTCAAAGGCAGCTAC
12119 TTGGACTTAAAGATG
125 TTGGACTTAAAGATG
* *
12134 AAGATGCCAATATGCTGATTCAAGGCCAGCT
1 AAGGTGCCAATGTGCTGA-TCAAGGCCAGCT
12165 AATGAGGCAT
Statistics
Matches: 155, Mismatches: 7, Indels: 22
0.84 0.04 0.12
Matches are distributed among these distances:
139 8 0.05
140 26 0.17
141 10 0.06
142 1 0.01
143 27 0.17
144 38 0.25
145 41 0.26
146 4 0.03
ACGTcount: A:0.32, C:0.18, G:0.27, T:0.23
Consensus pattern (139 bp):
AAGGTGCCAATGTGCTGATCAAGGCCAGCTTACATTGGACTAAAAGATGAAGATGCCAATATGCG
AATCAAGGCCAGCGATATTGGACTTAAAGTGCCAATGTGCTTGAGTCAAAGGCAGCTACTTGGAC
TTAAAGATG
Found at i:12065 original size:54 final size:48
Alignment explanation
Indices: 11953--12165 Score: 153
Period size: 49 Copynumber: 4.4 Consensus size: 48
11943 AAGTCCGATG
* *
11953 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAGGTGCCAATGG
1 TGCTGA-TCAAGGCCAGCTACATTGGACTAAAAGATGAGGTGCCAATGA
12002 TGCTGATCAAGGCCAGCTTACATTGGACGTAAAAGATGGAAAAGGTGCACAAT-A
1 TGCTGATCAAGGCCAGC-TACATTGGAC-TAAAAGAT-G---AGGTGC-CAATGA
* * *
12056 TGC-GAATCAAGGCCAGCGATATTGGACT--TA-A--A-GTGCCAATG-
1 TGCTG-ATCAAGGCCAGCTACATTGGACTAAAAGATGAGGTGCCAATGA
* *
12097 TGCTTGAGTCAAAGG-CAGCTAC-TTGGACTTAAAGATGAAGATGCCAAT-A
1 TGC-TGA-TC-AAGGCCAGCTACATTGGACTAAAAGATG-AGGTGCCAATGA
12146 TGCTGATTCAAGGCCAGCTA
1 TGCTGA-TCAAGGCCAGCTA
12166 ATGAGGCATT
Statistics
Matches: 132, Mismatches: 10, Indels: 45
0.71 0.05 0.24
Matches are distributed among these distances:
41 7 0.05
42 12 0.09
43 9 0.07
44 5 0.04
45 1 0.01
47 4 0.03
48 23 0.17
49 27 0.20
50 8 0.06
51 1 0.01
52 1 0.01
53 9 0.07
54 21 0.16
55 4 0.03
ACGTcount: A:0.32, C:0.18, G:0.26, T:0.23
Consensus pattern (48 bp):
TGCTGATCAAGGCCAGCTACATTGGACTAAAAGATGAGGTGCCAATGA
Found at i:13202 original size:25 final size:25
Alignment explanation
Indices: 13174--13250 Score: 111
Period size: 25 Copynumber: 3.0 Consensus size: 25
13164 AAAACATGAA
13174 CAGCATGGGAAAGGAAATAAAAATG
1 CAGCATGGGAAAGGAAATAAAAATG
13199 CAGCATGGGAAAGGAAATAAAAAATG
1 CAGCATGGGAAAGGAAAT-AAAAATG
13225 CAGCA-GCATGGAAAGGAAATAAAAAT
1 CAGCATG---GGAAAGGAAATAAAAAT
13251 TGCAATTGGA
Statistics
Matches: 48, Mismatches: 0, Indels: 6
0.89 0.00 0.11
Matches are distributed among these distances:
25 19 0.40
26 12 0.25
27 6 0.12
28 11 0.23
ACGTcount: A:0.53, C:0.09, G:0.26, T:0.12
Consensus pattern (25 bp):
CAGCATGGGAAAGGAAATAAAAATG
Found at i:13246 original size:28 final size:29
Alignment explanation
Indices: 13174--13254 Score: 118
Period size: 28 Copynumber: 3.0 Consensus size: 29
13164 AAAACATGAA
13174 CAGCATGGGAAAGGAAAT-AAAAAT---G
1 CAGCATGGGAAAGGAAATAAAAAATGCAG
13199 CAGCATGGGAAAGGAAATAAAAAATGCAG
1 CAGCATGGGAAAGGAAATAAAAAATGCAG
*
13228 CAGCAT-GGAAAGGAAATAAAAATTGCA
1 CAGCATGGGAAAGGAAATAAAAAATGCA
13255 ATTGGAGACA
Statistics
Matches: 51, Mismatches: 1, Indels: 5
0.89 0.02 0.09
Matches are distributed among these distances:
25 18 0.35
26 6 0.12
28 20 0.39
29 7 0.14
ACGTcount: A:0.52, C:0.10, G:0.26, T:0.12
Consensus pattern (29 bp):
CAGCATGGGAAAGGAAATAAAAAATGCAG
Found at i:13589 original size:18 final size:18
Alignment explanation
Indices: 13564--13702 Score: 104
Period size: 18 Copynumber: 7.6 Consensus size: 18
13554 AACACGCAAA
13564 AGCAGCTCCAGCAGCAGC
1 AGCAGCTCCAGCAGCAGC
* * *
13582 ACCAGCTCCAGCGGCGGC
1 AGCAGCTCCAGCAGCAGC
* * *
13600 -GACAGCTCTAGCACGGAAC
1 AG-CAGCTCCAGCA-GCAGC
*
13619 AGCAGCTCCAACAGCAGC
1 AGCAGCTCCAGCAGCAGC
* *
13637 AGCAACTCCAGTAGC-GAC
1 AGCAGCTCCAGCAGCAG-C
* *
13655 TGCAGCTCCAGCACGCAAC
1 AGCAGCTCCAGCA-GCAGC
13674 AGCAGCTCCAGCGAG-AGC
1 AGCAGCTCCAGC-AGCAGC
*
13692 AGCAACTCCAG
1 AGCAGCTCCAG
13703 TAGGTAGCAA
Statistics
Matches: 91, Mismatches: 23, Indels: 14
0.71 0.18 0.11
Matches are distributed among these distances:
17 1 0.01
18 62 0.68
19 26 0.29
20 2 0.02
ACGTcount: A:0.29, C:0.37, G:0.26, T:0.08
Consensus pattern (18 bp):
AGCAGCTCCAGCAGCAGC
Found at i:13703 original size:55 final size:55
Alignment explanation
Indices: 13550--13705 Score: 190
Period size: 55 Copynumber: 2.8 Consensus size: 55
13540 TAGCCAACGA
* * * * ** *
13550 CTCCAACACGCAAAAGCAGCTCCAGCAGCAGCACCAGCTCCAGCGGCGGCGACAG
1 CTCCAGCACGCAACAGCAGCTCCAGCAGCAGCAGCAACTCCAGTAGCGACGACAG
* * *
13605 CTCTAGCACGGAACAGCAGCTCCAACAGCAGCAGCAACTCCAGTAGCGACTG-CAG
1 CTCCAGCACGCAACAGCAGCTCCAGCAGCAGCAGCAACTCCAGTAGCGAC-GACAG
13660 CTCCAGCACGCAACAGCAGCTCCAGCGAG-AGCAGCAACTCCAGTAG
1 CTCCAGCACGCAACAGCAGCTCCAGC-AGCAGCAGCAACTCCAGTAG
13706 GTAGCAATTT
Statistics
Matches: 86, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
55 83 0.97
56 3 0.03
ACGTcount: A:0.30, C:0.37, G:0.24, T:0.08
Consensus pattern (55 bp):
CTCCAGCACGCAACAGCAGCTCCAGCAGCAGCAGCAACTCCAGTAGCGACGACAG
Found at i:14684 original size:51 final size:50
Alignment explanation
Indices: 14629--15249 Score: 347
Period size: 51 Copynumber: 11.9 Consensus size: 50
14619 CAATTGCTCA
*
14629 TAATCGGGGATACTCTAACCCCGGTTTTATTTTCAAAACACCAATTTCCTT
1 TAATCGGGGATACTCCAACCCCGGTTTTATTTTCAAAACACCAATTT-CTT
* * * *
14680 TAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAAACACCACTTT-TT
1 TAATCGGGGATACTCCAACCCCGGTTTTATTTTC-AAAACACCAATTTCTT
* * * **** * * *** *
14730 CACAATCGAGGATACTCCAACCCCGTTATTTCATTAGGGATACTCCAACCCCGT
1 --TAATCGGGGATACTCCAACCCCGGT-TTT-ATTTTCAAAACACCAATTTCTT
* * * * *** *
14784 TACCTCCGAGGGGATACTCCAACCCCGGCTTTATTTCCAAAATATTGATTTCTCA
1 TA-AT-C--GGGGATACTCCAACCCCGGTTTTATTTTCAAAACACCAATTTCT-T
* *
14839 TAATGGGGGATACTCCAACCCCGGTTTTA-TTTCTAAAACACTAATTT-TT
1 TAATCGGGGATACTCCAACCCCGGTTTTATTTTC-AAAACACCAATTTCTT
*
14888 CATAATCGGGGATACTCTAACCCCGGTTTTATTTTTCAAAACACCAAATTTCCTT
1 --TAATCGGGGATACTCCAACCCCGGTTTTA-TTTTCAAAACACC-AATTT-CTT
* *
14943 TAATCGGGGATACTCCAACCTCGGTTTTATTTTAAAAACACCAA--TCTT
1 TAATCGGGGATACTCCAACCCCGGTTTTATTTTCAAAACACCAATTTCTT
* * * * ***** * * *** *
14991 TCACAATCGAGGATATTCCAACCTCGTTATTTCATCGGGGATACTCCAACCCCGT
1 T---AATCGGGGATACTCCAACCCCGGT-TTT-ATTTTCAAAACACCAATTTCTT
* * * * *** *
15046 TACCTCCGAGGGGATACTCCAACCCCGGCTTTATTTCCAAAATATTGATTTCTCA
1 TA-AT-C--GGGGATACTCCAACCCCGGTTTTATTTTCAAAACACCAATTTCT-T
* * *
15101 TAATGGGGGATACTCCAACCCCGATTTTA-TTTCTAAAACACTAATTT-TT
1 TAATCGGGGATACTCCAACCCCGGTTTTATTTTC-AAAACACCAATTTCTT
* * *
15150 CATAATCGAGGATACTCTAACCCAGGTTTTATTTTTCAAAACACCAAATTTCCTT
1 --TAATCGGGGATACTCCAACCCCGGTTTTA-TTTTCAAAACACC-AATTT-CTT
*
15205 TAATCGGGGATACTCCAACCCCGGTTTTATTTTAAAAACACCAAT
1 TAATCGGGGATACTCCAACCCCGGTTTTATTTTCAAAACACCAAT
15250 CTTTCACAAT
Statistics
Matches: 424, Mismatches: 107, Indels: 78
0.70 0.18 0.13
Matches are distributed among these distances:
48 4 0.01
49 1 0.00
50 10 0.02
51 172 0.41
52 76 0.18
53 91 0.21
54 21 0.05
55 17 0.04
56 32 0.08
ACGTcount: A:0.29, C:0.26, G:0.13, T:0.32
Consensus pattern (50 bp):
TAATCGGGGATACTCCAACCCCGGTTTTATTTTCAAAACACCAATTTCTT
Found at i:14797 original size:28 final size:28
Alignment explanation
Indices: 14739--14810 Score: 92
Period size: 28 Copynumber: 2.6 Consensus size: 28
14729 TCACAATCGA
** **
14739 GGATACTCCAACCCCGTTATTTCATTAG
1 GGATACTCCAACCCCGTTACCTCACGAG
14767 GGATACTCCAACCCCGTTACCTC-CGAGG
1 GGATACTCCAACCCCGTTACCTCACGA-G
14795 GGATACTCCAACCCCG
1 GGATACTCCAACCCCG
14811 GCTTTATTTC
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
27 1 0.03
28 38 0.97
ACGTcount: A:0.24, C:0.36, G:0.18, T:0.22
Consensus pattern (28 bp):
GGATACTCCAACCCCGTTACCTCACGAG
Found at i:14971 original size:104 final size:104
Alignment explanation
Indices: 14793--15248 Score: 306
Period size: 104 Copynumber: 4.4 Consensus size: 104
14783 TTACCTCCGA
* * * *** * *
14793 GGGGATACTCCAACCCCGGCTTTA-TTTCCAAAATA-TTGATTTCTCATAATGGGGGATACTCCA
1 GGGGATACTCCAACCCCGGTTTTATTTTTCAAAACACCAAATTTC-CTTAATCGGGGATACTCCA
*
14856 ACCCCGGTTTTATTTCT-AAAACACTAATTTTTCATAATC
65 ACCCCGGTTTTATTTCTAAAAACACCAATTTTTCATAATC
*
14895 GGGGATACTCTAACCCCGGTTTTATTTTTCAAAACACCAAATTTCCTTTAATCGGGGATACTCCA
1 GGGGATACTCCAACCCCGGTTTTATTTTTCAAAACACCAAATTTCC-TTAATCGGGGATACTCCA
* * *
14960 ACCTCGGTTTTATTT-TAAAAACACCAATCTTTCACAATC
65 ACCCCGGTTTTATTTCTAAAAACACCAATTTTTCATAATC
* * * * * * * ** *
14999 GAGGATATTCCAACCTC-G--TTATTTCATCGGGGATACTCC-AA-CCCCGTTACCTCCGAGGGG
1 GGGGATACTCCAACCCCGGTTTTATTT-TTC---AAAACACCAAATTTCC-TTA-AT-C--GGGG
* * * *** * *
15059 ATACTCCAACCCCGGCTTTATTTC-CAAAATATTGATTTCTCATAATG
57 ATACTCCAACCCCGGTTTTATTTCTAAAAACACCAATTTTTCATAATC
* * * * * * * *
15106 GGGGATACTCCAACCCCGATTTTATTTCT-AAAACACTAATTTTTCATAATCGAGGATACTCTAA
1 GGGGATACTCCAACCCCGGTTTTATTTTTCAAAACACCAAATTTCCTTAATCGGGGATACTCCAA
* * * * * *
15170 CCCAGGTTTTATTTTTCAAAACACCAAATTTCCTTTAATC
66 CCCCGGTTTTATTTCTAAAAACACCAATTTTTC-ATAATC
*
15210 GGGGATACTCCAACCCCGGTTTTA-TTTTAAAAACACCAA
1 GGGGATACTCCAACCCCGGTTTTATTTTTCAAAACACCAA
15249 TCTTTCACAA
Statistics
Matches: 265, Mismatches: 68, Indels: 40
0.71 0.18 0.11
Matches are distributed among these distances:
101 6 0.02
102 47 0.18
103 30 0.11
104 107 0.40
105 11 0.04
106 3 0.01
107 54 0.20
109 1 0.00
110 6 0.02
ACGTcount: A:0.29, C:0.25, G:0.13, T:0.33
Consensus pattern (104 bp):
GGGGATACTCCAACCCCGGTTTTATTTTTCAAAACACCAAATTTCCTTAATCGGGGATACTCCAA
CCCCGGTTTTATTTCTAAAAACACCAATTTTTCATAATC
Found at i:15090 original size:262 final size:262
Alignment explanation
Indices: 14626--15385 Score: 1310
Period size: 262 Copynumber: 2.9 Consensus size: 262
14616 TCTCAATTGC
14626 TCATAATCGGGGATACTCTAACCCCGGTTTTA-TTTTCAAAACACC-AATTTCCTTTAATCGGGG
1 TCATAATCGGGGATACTCTAACCCCGGTTTTATTTTTCAAAACACCAAATTTCCTTTAATCGGGG
* * * * * *
14689 ATACTCCAA-CTCCGATTTTATTTCCAAAAACACCACTTTTTCACAATCGAGGATACTCCAACCC
66 ATACTCCAACCT-CGGTTTTATTT-TAAAAACACCAATCTTTCACAATCGAGGATATTCCAACCT
*
14753 CGTTATTTCATTAGGGATACTCCAACCCCGTTACCTCCGAGGGGATACTCCAACCCCGGCTTTAT
129 CGTTATTTCATTGGGGATACTCCAACCCCGTTACCTCCGAGGGGATACTCCAACCCCGGCTTTAT
*
14818 TTCCAAAATATTGATTTCTCATAATGGGGGATACTCCAACCCCGGTTTTATTTCTAAAACACTAA
194 TTCCAAAATATTGATTTCTCATAATGGGGGATACTCCAACCCCGATTTTATTTCTAAAACACTAA
14883 TTTT
259 TTTT
14887 TCATAATCGGGGATACTCTAACCCCGGTTTTATTTTTCAAAACACCAAATTTCCTTTAATCGGGG
1 TCATAATCGGGGATACTCTAACCCCGGTTTTATTTTTCAAAACACCAAATTTCCTTTAATCGGGG
14952 ATACTCCAACCTCGGTTTTATTTTAAAAACACCAATCTTTCACAATCGAGGATATTCCAACCTCG
66 ATACTCCAACCTCGGTTTTATTTTAAAAACACCAATCTTTCACAATCGAGGATATTCCAACCTCG
*
15017 TTATTTCATCGGGGATACTCCAACCCCGTTACCTCCGAGGGGATACTCCAACCCCGGCTTTATTT
131 TTATTTCATTGGGGATACTCCAACCCCGTTACCTCCGAGGGGATACTCCAACCCCGGCTTTATTT
15082 CCAAAATATTGATTTCTCATAATGGGGGATACTCCAACCCCGATTTTATTTCTAAAACACTAATT
196 CCAAAATATTGATTTCTCATAATGGGGGATACTCCAACCCCGATTTTATTTCTAAAACACTAATT
15147 TT
261 TT
* *
15149 TCATAATCGAGGATACTCTAACCCAGGTTTTATTTTTCAAAACACCAAATTTCCTTTAATCGGGG
1 TCATAATCGGGGATACTCTAACCCCGGTTTTATTTTTCAAAACACCAAATTTCCTTTAATCGGGG
*
15214 ATACTCCAACCCCGGTTTTATTTTAAAAACACCAATCTTTCACAATCGAGGATATTCCAACCTCG
66 ATACTCCAACCTCGGTTTTATTTTAAAAACACCAATCTTTCACAATCGAGGATATTCCAACCTCG
* *
15279 TTATTTCATTGGGGATACTCCAACCCCATTACCTCCGAGGGGATACTCCAACCCCGACTTTATTT
131 TTATTTCATTGGGGATACTCCAACCCCGTTACCTCCGAGGGGATACTCCAACCCCGGCTTTATTT
* ** * *
15344 CCAGAATATTGATTTCTCATAATTAGGGATGCTCCAATCCCG
196 CCAAAATATTGATTTCTCATAATGGGGGATACTCCAACCCCG
15386 TTATTTCCGA
Statistics
Matches: 476, Mismatches: 20, Indels: 5
0.95 0.04 0.01
Matches are distributed among these distances:
261 32 0.07
262 405 0.85
263 37 0.08
264 2 0.00
ACGTcount: A:0.28, C:0.27, G:0.13, T:0.32
Consensus pattern (262 bp):
TCATAATCGGGGATACTCTAACCCCGGTTTTATTTTTCAAAACACCAAATTTCCTTTAATCGGGG
ATACTCCAACCTCGGTTTTATTTTAAAAACACCAATCTTTCACAATCGAGGATATTCCAACCTCG
TTATTTCATTGGGGATACTCCAACCCCGTTACCTCCGAGGGGATACTCCAACCCCGGCTTTATTT
CCAAAATATTGATTTCTCATAATGGGGGATACTCCAACCCCGATTTTATTTCTAAAACACTAATT
TT
Found at i:15224 original size:211 final size:211
Alignment explanation
Indices: 14844--15224 Score: 502
Period size: 211 Copynumber: 1.8 Consensus size: 211
14834 TCTCATAATG
* * * *
14844 GGGGATACTCCAACCCCGGTTTTATTTCTAAAACACTAATTTTTCATAATCGGGGATACTCTAAC
1 GGGGATACTCCAACCCCGGCTTTATTTCCAAAACACTAATTTCTCATAATCGGGGATACTCCAAC
* * * *
14909 CCCGGTTTTATTTTTCAAAACACCAAATTTCCTTTAATCGGGGATACTCCAACCTCGGTTTTATT
66 CCCGATTTTATTTCTCAAAACACCAAATTTCCTATAATCGAGGATACTCCAACCTCGGTTTTATT
* *
14974 TTAAAAACACCAATCTTTCACAATCGAGGATATTCCAACCTCGTTATTTCATCGGGGATACTCCA
131 TTAAAAACACCAATATTTCACAATCGAGGATACTCCAACCTCGTTATTTCATCGGGGATACTCCA
15039 ACCCCGTTACCTCCGA
196 ACCCCGTTACCTCCGA
* * * *
15055 GGGGATACTCCAACCCCGGCTTTATTTCCAAAATATTGATTTCTCATAATGGGGGATACTCCAAC
1 GGGGATACTCCAACCCCGGCTTTATTTCCAAAACACTAATTTCTCATAATCGGGGATACTCCAAC
* * * *
15120 CCCGATTTTATTTCT-AAAACACTAATTTTTC-ATAATCGAGGATACTCTAACC-CAGGTTTTAT
66 CCCGATTTTATTTCTCAAAACACCAAATTTCCTATAATCGAGGATACTCCAACCTC-GGTTTTA-
* *
15182 TTTTCAAAACACCAA-ATTTC-CTTTAATCGGGGATACTCCAACC
129 TTTTAAAAACACCAATATTTCAC---AATCGAGGATACTCCAACC
15225 CCGGTTTTAT
Statistics
Matches: 145, Mismatches: 20, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
208 2 0.01
209 29 0.20
210 27 0.19
211 87 0.60
ACGTcount: A:0.29, C:0.25, G:0.13, T:0.33
Consensus pattern (211 bp):
GGGGATACTCCAACCCCGGCTTTATTTCCAAAACACTAATTTCTCATAATCGGGGATACTCCAAC
CCCGATTTTATTTCTCAAAACACCAAATTTCCTATAATCGAGGATACTCCAACCTCGGTTTTATT
TTAAAAACACCAATATTTCACAATCGAGGATACTCCAACCTCGTTATTTCATCGGGGATACTCCA
ACCCCGTTACCTCCGA
Found at i:15373 original size:79 final size:79
Alignment explanation
Indices: 15290--15492 Score: 228
Period size: 79 Copynumber: 2.6 Consensus size: 79
15280 TATTTCATTG
* ** * *
15290 GGGATACTCCAACCCCATTACCTCCGAGGGGATACTCCAACCCCGACTTTATTTCCAGAAT-ATT
1 GGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGACTTTATTTCC-CAATCATC
* **
15354 GATTTCTCATAATTA
65 GATTTCTCACAACCA
* * * * *
15369 GGGATGCTCCAATCCCGTTATTTCCGAGGGGATACTCTAATCCCGATTTTATTTCCCAATCATCG
1 GGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGACTTTATTTCCCAATCATCG
* *
15434 ATTTTTCACAACCG
66 ATTTCTCACAACCA
* * *
15448 GGGATACTCCAACCCCGTTATTTTCAAGAGGATACTCCAACCCCG
1 GGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCG
15493 TTATTATCTC
Statistics
Matches: 101, Mismatches: 22, Indels: 2
0.81 0.18 0.02
Matches are distributed among these distances:
78 3 0.03
79 98 0.97
ACGTcount: A:0.26, C:0.30, G:0.16, T:0.29
Consensus pattern (79 bp):
GGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGACTTTATTTCCCAATCATCG
ATTTCTCACAACCA
Found at i:16706 original size:18 final size:19
Alignment explanation
Indices: 16683--16718 Score: 65
Period size: 18 Copynumber: 1.9 Consensus size: 19
16673 ACAAAAGTTA
16683 TAAAAGTAATAAA-TTGTG
1 TAAAAGTAATAAAGTTGTG
16701 TAAAAGTAATAAAGTTGT
1 TAAAAGTAATAAAGTTGT
16719 AATATAATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 13 0.76
19 4 0.24
ACGTcount: A:0.50, C:0.00, G:0.17, T:0.33
Consensus pattern (19 bp):
TAAAAGTAATAAAGTTGTG
Found at i:17735 original size:26 final size:26
Alignment explanation
Indices: 17706--17755 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
17696 ATGAAAAATT
*
17706 ATTTAATAAAATATTTATAAATAAGA
1 ATTTAATAAAATAGTTATAAATAAGA
**
17732 ATTTAATATTATAGTTATAAATAA
1 ATTTAATAAAATAGTTATAAATAA
17756 TATATAGTAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.54, C:0.00, G:0.04, T:0.42
Consensus pattern (26 bp):
ATTTAATAAAATAGTTATAAATAAGA
Found at i:17771 original size:18 final size:18
Alignment explanation
Indices: 17735--17772 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
17725 AATAAGAATT
*
17735 TAATATTATAGTTATAAA
1 TAATATTATAGTAATAAA
17753 TAATA-TATAGTAATCAAA
1 TAATATTATAGTAAT-AAA
17771 TA
1 TA
17773 TTTTAAATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 8 0.44
18 10 0.56
ACGTcount: A:0.53, C:0.03, G:0.05, T:0.39
Consensus pattern (18 bp):
TAATATTATAGTAATAAA
Found at i:21597 original size:24 final size:23
Alignment explanation
Indices: 21564--21618 Score: 60
Period size: 24 Copynumber: 2.4 Consensus size: 23
21554 ATTATTACAA
21564 TTATA-TAATTAATTAATT-TAGT
1 TTATATTAATTAATT-ATTATAGT
* *
21586 TTATAATTAATTTATTATTATATT
1 TTAT-ATTAATTAATTATTATAGT
21610 TTATATTAA
1 TTATATTAA
21619 AAAATTTTAA
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
22 4 0.14
23 9 0.32
24 15 0.54
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (23 bp):
TTATATTAATTAATTATTATAGT
Found at i:22087 original size:17 final size:18
Alignment explanation
Indices: 22059--22092 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
22049 TTTAATTAGT
22059 TATCATTTAATTATATTA
1 TATCATTTAATTATATTA
*
22077 TATCA-TTAATTTTATT
1 TATCATTTAATTATATT
22093 TTTTATAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.35, C:0.06, G:0.00, T:0.59
Consensus pattern (18 bp):
TATCATTTAATTATATTA
Found at i:22433 original size:16 final size:16
Alignment explanation
Indices: 22399--22433 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
22389 ATATTTGAGG
**
22399 ATATAATATGTCACGA
1 ATATAATATGTCAAAA
22415 ATATAATATGTCAAAA
1 ATATAATATGTCAAAA
22431 ATA
1 ATA
22434 ATTAAAATAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.51, C:0.09, G:0.09, T:0.31
Consensus pattern (16 bp):
ATATAATATGTCAAAA
Found at i:22457 original size:12 final size:12
Alignment explanation
Indices: 22440--22465 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
22430 AATAATTAAA
22440 ATAAAAAATAAT
1 ATAAAAAATAAT
22452 ATAAAAAATAAT
1 ATAAAAAATAAT
22464 AT
1 AT
22466 GAACATAATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (12 bp):
ATAAAAAATAAT
Found at i:22799 original size:17 final size:17
Alignment explanation
Indices: 22773--22806 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
22763 TCAAATATAT
*
22773 TAAATAAAAATTAAAAA
1 TAAATAAAAATGAAAAA
*
22790 TAAATTAAAATGAAAAA
1 TAAATAAAAATGAAAAA
22807 AATTAAGATA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.74, C:0.00, G:0.03, T:0.24
Consensus pattern (17 bp):
TAAATAAAAATGAAAAA
Found at i:36718 original size:50 final size:50
Alignment explanation
Indices: 36644--36776 Score: 205
Period size: 50 Copynumber: 2.7 Consensus size: 50
36634 ATTTGCCTGC
* * *
36644 ATGTATCGATACATTGAATG-ATGTATCGATACATTTGGGTAAAATCCAGA
1 ATGTATCGATACAATGAA-GAATGTATCGATACATCTGGGTAAAACCCAGA
*
36694 ATGTATCGATATAATGAAGAATGTATCGATACATCTGGGTAAAACCCAGA
1 ATGTATCGATACAATGAAGAATGTATCGATACATCTGGGTAAAACCCAGA
*
36744 ATGTATCGATACAATGAATAATGTATCGATACA
1 ATGTATCGATACAATGAAGAATGTATCGATACA
36777 AATAGTAAAA
Statistics
Matches: 76, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
49 1 0.01
50 75 0.99
ACGTcount: A:0.39, C:0.13, G:0.19, T:0.29
Consensus pattern (50 bp):
ATGTATCGATACAATGAAGAATGTATCGATACATCTGGGTAAAACCCAGA
Found at i:39320 original size:155 final size:152
Alignment explanation
Indices: 39079--39670 Score: 504
Period size: 155 Copynumber: 3.9 Consensus size: 152
39069 AAATACAGAG
*
39079 TTTTCTATTCCGTAAATTTTTCAGT-AGGATTTTTTTAAGTTTATGATTTTCAAAATTC-TTAGA
1 TTTTCTATTCCGTAAATTTTTCAGTGAGGATTTTTTTAAGTTTATAATTTT-AAAATTCTTTA-A
* * * * *
39142 ATATTATTGCTTAATTTACATTAAATTAATTTTGAAGAATTCAATTTATTTTATGATTTTTAGAA
64 ATATTATTGTTTAATTCATATTAAATTAATTTTGAA-AATTAAATTTATTTTATGAGTTTTAGAA
39207 TTTTTCCTATTACAAAAATACGAAA
128 TTTTTCCTATTACAAAAATACGAAA
*
39232 TTTTCTACTT-CGTAAATTTCTCCAGTGA-GATTTTTTTTAAGTTTATAATTTTAAAAATTCTTT
1 TTTTCTA-TTCCGTAAATTT-TTCAGTGAGGA-TTTTTTTAAGTTTATAATTTT-AAAATTCTTT
* * * * * *
39295 AAATATCATTGTTTAATTCATATTAAATCAGTTTTGAAAAAATAAATTCATTTTATGAGTTTTAA
62 AAATATTATTGTTTAATTCATATTAAATTAATTTTG-AAAATTAAATTTATTTTATGAGTTTTAG
* * ** *
39360 AATTTTTTCTATTACTAAAATGTGAAG
126 AATTTTTCCTATTACAAAAATACGAAA
* * *
39387 TTTTCTATTCCATAAATTTTTC--TGAAGGATTTTTCTAAATTTATAATTTCTAAAATT-TTTCA
1 TTTTCTATTCCGTAAATTTTTCAGTG-AGGATTTTTTTAAGTTTATAATTT-TAAAATTCTTT-A
** * * * * *
39449 AATATTATT-TTTGGTTCTTATTAAATTATTTTTGAAAATTTAATATATTTTATGAGTTTTAGAT
63 AATATTATTGTTTAATTCATATTAAATTAATTTTGAAAATTAAATTTATTTTATGAGTTTTAGAA
* * * * * * *
39513 TTTTTTCTGTTTTC-AAGATATGGAG
128 TTTTTCCT-ATTACAAAAATACGAAA
* ** * * * * *
39538 TTTTCTACTCCGTAAATTTTTTGGT-AGGATTTTTCTGACTTTATAATTTTTAGAATTCATTAAA
1 TTTTCTATTCCGTAAATTTTTCAGTGAGGATTTTTTTAAGTTTATAA-TTTTAAAATTCTTTAAA
** * * * * * * *
39602 TATT-TTCATTAGATCCATATTAAATCAATTTTTGTACATTCAATTTATTTTATGAGTTTTGGAT
65 TATTATTGTTTA-ATTCATATTAAATTAA-TTTTGAAAATTAAATTTATTTTATGAGTTTTAGAA
39666 TTTTT
128 TTTTT
39671 TATATAACAA
Statistics
Matches: 361, Mismatches: 59, Indels: 38
0.79 0.13 0.08
Matches are distributed among these distances:
150 2 0.01
151 93 0.26
152 44 0.12
153 86 0.24
154 16 0.04
155 115 0.32
156 5 0.01
ACGTcount: A:0.32, C:0.08, G:0.09, T:0.51
Consensus pattern (152 bp):
TTTTCTATTCCGTAAATTTTTCAGTGAGGATTTTTTTAAGTTTATAATTTTAAAATTCTTTAAAT
ATTATTGTTTAATTCATATTAAATTAATTTTGAAAATTAAATTTATTTTATGAGTTTTAGAATTT
TTCCTATTACAAAAATACGAAA
Found at i:40934 original size:157 final size:157
Alignment explanation
Indices: 40646--41217 Score: 776
Period size: 157 Copynumber: 3.7 Consensus size: 157
40636 TTTTTGTTCC
*
40646 AAGGCCAAAAGTACTTGGCCGAATCTTCCTTGTAACTTTTGGATGTGTTTTGTATGTTGATTTTG
1 AAGGCCAAAAGTACTTGGCCGAATCTTCCTTGTAACTTTTGGATGTGTTTTGTATGCTGATTTTG
*
40711 ATTTCTTGGATGTTTAATTTTGTGTTTTTATTAGGTAAGGACTAACATGCAAAATTAGAAAGTTT
66 ATTTCTTGGATGTTTAATTTTGTGTTTTTATTAGGTAAGGACTAACTTGCAAAATTAGAAAGTTT
*
40776 AAGGGGTTTATTTAAAAATCTTATTTT
131 AAGGGGTTTATTTAAAAATCTTATTCT
* * *
40803 GAGGCCAAAAGTACTTGGCCAAATCTTCCTTGTAACTTTTGGATGTGTTTTGTGTGCTGATTTTG
1 AAGGCCAAAAGTACTTGGCCGAATCTTCCTTGTAACTTTTGGATGTGTTTTGTATGCTGATTTTG
* * * * *
40868 AATTCTTTGATGTTTAATTTTGTGTTTTTATTAGGTAATGACTAACTTGCAAAATTAAAAAATTT
66 ATTTCTTGGATGTTTAATTTTGTGTTTTTATTAGGTAAGGACTAACTTGCAAAATTAGAAAGTTT
* **
40933 AAGGGTTTTATTCGAAAATCTTATTCT
131 AAGGGGTTTATTTAAAAATCTTATTCT
* * * * * * *
40960 AAGGCCAAAAGTACTTGGTCGAATCATCCTTGTAACGTTTT-CATGTGTTTCGCACGTTGATTTT
1 AAGGCCAAAAGTACTTGGCCGAATCTTCCTTGTAAC-TTTTGGATGTGTTTTGTATGCTGATTTT
*
41024 GATTTCTTGGATGTTTAATTTTGTGTTTTTATTAGGTAAGGACTAATTTGCAAAATTAGAAAGTT
65 GATTTCTTGGATGTTTAATTTTGTGTTTTTATTAGGTAAGGACTAACTTGCAAAATTAGAAAGTT
* *
41089 T-AGAGGGTTTA-TTAAAAATTTTATTCC
130 TAAG-GGGTTTATTTAAAAATCTTATTCT
* * * * * *
41116 AAAGCCAAAGGTGA-TTGGCCGAATCTTCCTT-TAACTTCTGGATGTGTTTTATAAGCTAATTTT
1 AAGGCCAAAAGT-ACTTGGCCGAATCTTCCTTGTAACTTTTGGATGTGTTTTGTATGCTGATTTT
* * * *
41179 GATTTCTTTGATGCTTAATTTTGTGTTTTAATTATGTAA
65 GATTTCTTGGATGTTTAATTTTGTGTTTTTATTAGGTAA
41218 ATTATTTTTT
Statistics
Matches: 360, Mismatches: 51, Indels: 10
0.86 0.12 0.02
Matches are distributed among these distances:
154 3 0.01
155 55 0.15
156 39 0.11
157 259 0.72
158 4 0.01
ACGTcount: A:0.27, C:0.10, G:0.19, T:0.44
Consensus pattern (157 bp):
AAGGCCAAAAGTACTTGGCCGAATCTTCCTTGTAACTTTTGGATGTGTTTTGTATGCTGATTTTG
ATTTCTTGGATGTTTAATTTTGTGTTTTTATTAGGTAAGGACTAACTTGCAAAATTAGAAAGTTT
AAGGGGTTTATTTAAAAATCTTATTCT
Found at i:42218 original size:154 final size:149
Alignment explanation
Indices: 41967--42432 Score: 414
Period size: 154 Copynumber: 3.1 Consensus size: 149
41957 TCCTCTGGGT
* * * *
41967 ACTTTCACGTCGAAGGTACCTAGGGGCATTTTCATAATTTTCTTAT-AATCGAGTCTTAGGTTGT
1 ACTTTCACGTCGAAGGTACCCAAGGGCATTTTCGTAATTTT-TTTTGAATCGAGTCTTAGGTTGT
* * * * *
42031 CACCAGGATACTTTTATGCTGAAAGTGTGCATTTAAGATATGTTCATCCCATTTATTATCATTTT
65 CACCGGGATACTTTTATGC-GAAGGTGTGCATTTAAGATAGGTT-ATCCCATTTATAATAATTTT
42096 AGTGTCCATTAGAGTTACTAGGAA
128 AGTGTCCATTAG-GTTACT-GGAA
* *
42120 ACTTTTATGTCGAAGGTACCCCAAGGGCATTTTCGTAATTTTTTTTGAATCGAGTCTTAGGTTGT
1 ACTTTCACGTCGAAGGTA-CCCAAGGGCATTTTCGTAATTTTTTTTGAATCGAGTCTTAGGTTGT
** * * *
42185 CACCGGGATACTTTTATGTCGAAGGTGTGCATTT-AGTATAGGCTTATTGCAATTATGATTATTT
65 CACCGGGATACTTTTATG-CGAAGGTGTGCATTTAAG-ATAGG-TTATCCCATTTAT-AATAATT
*
42249 TTA-TGTCC------TT-C-GGAT
126 TTAGTGTCCATTAGGTTACTGGAA
* * * * * * **
42264 ACTTTCACGTCAAAGGTATACCAATGGGTATTTTAGTAATTTTATTTGAATCGAGTGTTATTTTG
1 ACTTTCACGTCGAAGGTA-CCCAA-GGGCATTTTCGTAATTTTTTTTGAATCGAGTCTTAGGTTG
* * * *
42329 TCATCGGGATGCTTTTATGCCAAAGGTGTGCATTTAGGATAGGTTTATCCCATTTATAATAATTT
64 TCACCGGGATACTTTTATG-CGAAGGTGTGCATTTAAGATAGG-TTATCCCATTTATAATAATTT
* *
42394 TAGTTTCCATTAGGGTTACTGAGAT
127 TAGTGTCCATTA-GGTTACTG-GAA
* *
42419 ATTTTCACATCGAA
1 ACTTTCACGTCGAA
42433 AGTATACCTT
Statistics
Matches: 251, Mismatches: 43, Indels: 36
0.76 0.13 0.11
Matches are distributed among these distances:
144 30 0.12
145 84 0.33
146 2 0.01
147 2 0.01
152 2 0.01
153 22 0.09
154 86 0.34
155 23 0.09
ACGTcount: A:0.26, C:0.15, G:0.20, T:0.40
Consensus pattern (149 bp):
ACTTTCACGTCGAAGGTACCCAAGGGCATTTTCGTAATTTTTTTTGAATCGAGTCTTAGGTTGTC
ACCGGGATACTTTTATGCGAAGGTGTGCATTTAAGATAGGTTATCCCATTTATAATAATTTTAGT
GTCCATTAGGTTACTGGAA
Found at i:44145 original size:17 final size:17
Alignment explanation
Indices: 44119--44155 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
44109 ACCCTTACCC
*
44119 TTTTTATTTTTTTTTGT
1 TTTTTATTTTTTTATGT
*
44136 TTTTTGTTTTTTTATGT
1 TTTTTATTTTTTTATGT
44153 TTT
1 TTT
44156 GAGCTTGTAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.05, C:0.00, G:0.08, T:0.86
Consensus pattern (17 bp):
TTTTTATTTTTTTATGT
Found at i:46283 original size:21 final size:20
Alignment explanation
Indices: 46259--46310 Score: 68
Period size: 21 Copynumber: 2.5 Consensus size: 20
46249 TTTTACAATT
46259 TGTATCGATACAAAAAAGTAA
1 TGTATCGATACAAAAAAG-AA
* *
46280 TGTATCGATACATAAATGAA
1 TGTATCGATACAAAAAAGAA
*
46300 TCTATCGATAC
1 TGTATCGATAC
46311 TAAGAGTTAT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
20 12 0.43
21 16 0.57
ACGTcount: A:0.44, C:0.13, G:0.13, T:0.29
Consensus pattern (20 bp):
TGTATCGATACAAAAAAGAA
Found at i:49886 original size:7 final size:7
Alignment explanation
Indices: 49871--49944 Score: 55
Period size: 7 Copynumber: 10.4 Consensus size: 7
49861 CTAAATAAGG
49871 AAAAA-A
1 AAAAAGA
49877 AAAAAGA
1 AAAAAGA
49884 AAAAAGA
1 AAAAAGA
** *
49891 ATGAGGAA
1 AAAAAG-A
49899 AAAAAGA
1 AAAAAGA
49906 AAAAAGA
1 AAAAAGA
49913 AAAACA-A
1 AAAA-AGA
*
49920 AAAAACA
1 AAAAAGA
49927 TAAAAATG-
1 -AAAAA-GA
49935 AAAAAGA
1 AAAAAGA
49942 AAA
1 AAA
49945 GTGCAGATAG
Statistics
Matches: 54, Mismatches: 7, Indels: 13
0.73 0.09 0.18
Matches are distributed among these distances:
6 7 0.13
7 37 0.69
8 10 0.19
ACGTcount: A:0.81, C:0.03, G:0.12, T:0.04
Consensus pattern (7 bp):
AAAAAGA
Found at i:49922 original size:22 final size:22
Alignment explanation
Indices: 49874--49944 Score: 79
Period size: 22 Copynumber: 3.2 Consensus size: 22
49864 AATAAGGAAA
**
49874 AAAAAAAAGAAAAAAGAATGAG
1 AAAAAAAAGAAAAAAGAAAAAG
* *
49896 GAAAAAAAGAAAAAAGAAAAAC
1 AAAAAAAAGAAAAAAGAAAAAG
* *
49918 AAAAAAACATAAAAATGAAAAAG
1 AAAAAAA-AGAAAAAAGAAAAAG
49941 AAAA
1 AAAA
49945 GTGCAGATAG
Statistics
Matches: 40, Mismatches: 8, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
22 24 0.60
23 16 0.40
ACGTcount: A:0.80, C:0.03, G:0.13, T:0.04
Consensus pattern (22 bp):
AAAAAAAAGAAAAAAGAAAAAG
Found at i:50392 original size:21 final size:19
Alignment explanation
Indices: 50368--50418 Score: 57
Period size: 21 Copynumber: 2.6 Consensus size: 19
50358 TTTCAACAAT
50368 TTGTATCGATACAAACAGTAA
1 TTGTATCGATACAAA-AGT-A
* * *
50389 TTGTATCAATACATAAGTG
1 TTGTATCGATACAAAAGTA
50408 TTGTATCGATA
1 TTGTATCGATA
50419 TAATGTATCG
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
19 10 0.38
20 3 0.12
21 13 0.50
ACGTcount: A:0.37, C:0.12, G:0.16, T:0.35
Consensus pattern (19 bp):
TTGTATCGATACAAAAGTA
Found at i:50490 original size:13 final size:13
Alignment explanation
Indices: 50472--50499 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
50462 CATTACTCAA
50472 TGTATCGATACAT
1 TGTATCGATACAT
50485 TGTATCGATACAT
1 TGTATCGATACAT
50498 TG
1 TG
50500 ATCTTTGTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.14, G:0.18, T:0.39
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:50494 original size:33 final size:33
Alignment explanation
Indices: 50452--50518 Score: 100
Period size: 33 Copynumber: 2.0 Consensus size: 33
50442 GCCAAGAAAA
50452 TGTATCGATACATT-ACTCAATGTATCGATACAT
1 TGTATCGATACATTGA-TCAATGTATCGATACAT
**
50485 TGTATCGATACATTGATCTTTGTATCGATACAT
1 TGTATCGATACATTGATCAATGTATCGATACAT
50518 T
1 T
50519 TGGGAAATTT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
33 30 0.97
34 1 0.03
ACGTcount: A:0.30, C:0.16, G:0.13, T:0.40
Consensus pattern (33 bp):
TGTATCGATACATTGATCAATGTATCGATACAT
Found at i:54563 original size:88 final size:88
Alignment explanation
Indices: 54414--54611 Score: 288
Period size: 88 Copynumber: 2.2 Consensus size: 88
54404 GTATTCGCAT
* * *
54414 TTGCATCATTTCATATGCATTTGTTATTCTATCAACACTTGCATTTGCATCGTTTCATACATATC
1 TTGCATCATTTCATATGCATTTATTATTCTATCAACACTTGCATCTGCATCATTTCATACATATC
*
54479 CACATTTTAAATGACATTAGTGC
66 CACATTTTAAACGACATTAGTGC
* * * *
54502 TTGCATTAGTTCATATGCATTTATTATTCTATTAACACTTGCGTCTGCATCATTTCATACATATC
1 TTGCATCATTTCATATGCATTTATTATTCTATCAACACTTGCATCTGCATCATTTCATACATATC
* * *
54567 TACGTTTTAAACGACATTAGTGT
66 CACATTTTAAACGACATTAGTGC
*
54590 TTGCATCATTTCTTATGCATTT
1 TTGCATCATTTCATATGCATTT
54612 GCCACATTAA
Statistics
Matches: 96, Mismatches: 14, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
88 96 1.00
ACGTcount: A:0.26, C:0.19, G:0.11, T:0.44
Consensus pattern (88 bp):
TTGCATCATTTCATATGCATTTATTATTCTATCAACACTTGCATCTGCATCATTTCATACATATC
CACATTTTAAACGACATTAGTGC
Found at i:55204 original size:20 final size:20
Alignment explanation
Indices: 55160--55233 Score: 71
Period size: 21 Copynumber: 3.6 Consensus size: 20
55150 TTCAACAATT
*
55160 TGTATCGATAGAATAAGGT-AA
1 TGTATCGATA-CAT-AGGTGAA
55181 TGTATCGATACATAGGTGAA
1 TGTATCGATACATAGGTGAA
* *
55201 TGTATAGATACAT-GCTTGAAA
1 TGTATCGATACATAG-GTG-AA
55222 TGTATCGATACA
1 TGTATCGATACA
55234 AAACCAAGCA
Statistics
Matches: 46, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
19 5 0.11
20 18 0.39
21 23 0.50
ACGTcount: A:0.38, C:0.09, G:0.22, T:0.31
Consensus pattern (20 bp):
TGTATCGATACATAGGTGAA
Found at i:55313 original size:20 final size:20
Alignment explanation
Indices: 55274--55314 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
55264 AAAGAAAATG
* *
55274 TATCGATACATTTTTCATTT
1 TATCAATACATTTTGCATTT
*
55294 TATCAATACATTTTGGATTT
1 TATCAATACATTTTGCATTT
55314 T
1 T
55315 GACCCAAATG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.27, C:0.12, G:0.07, T:0.54
Consensus pattern (20 bp):
TATCAATACATTTTGCATTT
Found at i:55334 original size:51 final size:52
Alignment explanation
Indices: 55269--55399 Score: 185
Period size: 51 Copynumber: 2.5 Consensus size: 52
55259 TCTGGAAAGA
*
55269 AAATGTATCGATACATTTTTCATTTTATCAATACA-TTTTG-GATTTTGACCC
1 AAATGTATCGATACATTTTTCATTGTATCAATA-AGTTTTGAGATTTTGACCC
* * *
55320 AAATGTATCAATACATTTTTCATTGTATCGATAAGTTTTGAGTTTTTGACCC
1 AAATGTATCGATACATTTTTCATTGTATCAATAAGTTTTGAGATTTTGACCC
* *
55372 AAATGTATCGATACATTCTTCAATGTAT
1 AAATGTATCGATACATTTTTCATTGTAT
55400 ACTACATGTA
Statistics
Matches: 71, Mismatches: 7, Indels: 3
0.88 0.09 0.04
Matches are distributed among these distances:
50 1 0.01
51 35 0.49
52 35 0.49
ACGTcount: A:0.31, C:0.15, G:0.11, T:0.44
Consensus pattern (52 bp):
AAATGTATCGATACATTTTTCATTGTATCAATAAGTTTTGAGATTTTGACCC
Found at i:58759 original size:82 final size:80
Alignment explanation
Indices: 58661--58849 Score: 202
Period size: 80 Copynumber: 2.3 Consensus size: 80
58651 GTTCCTTTGA
* * *
58661 AAATAACGGGGCTGGAGTATCCCCGGTTGTGAGAAATCGACG-ATCAGAAGAAAAAAAAATCGG-
1 AAATAACGGGGTTGGAGTATCCCCGATTGTGAAAAATCG--GTATCAGAAG-AAAAAAAATCGGA
*
58724 GATTGGAGTATCCCCGATG
63 G-TTGGAGTATCCCCGAGG
* * * **** *
58743 AAATAACGAGGTTGGAGTATCCTCGATTGTGAAAAATTGGTATTTTTAGAAATAAAATCGGAGTT
1 AAATAACGGGGTTGGAGTATCCCCGATTGTGAAAAATCGGTATCAGAAGAAAAAAAATCGGAGTT
**
58808 GGAGTATCCCCTCGG
66 GGAGTATCCCCGAGG
58823 AAATAACGGGGTTGGAGTATCCCCGAT
1 AAATAACGGGGTTGGAGTATCCCCGAT
58850 GATTAACGGG
Statistics
Matches: 89, Mismatches: 16, Indels: 6
0.80 0.14 0.05
Matches are distributed among these distances:
80 51 0.57
81 5 0.06
82 33 0.37
ACGTcount: A:0.33, C:0.15, G:0.28, T:0.24
Consensus pattern (80 bp):
AAATAACGGGGTTGGAGTATCCCCGATTGTGAAAAATCGGTATCAGAAGAAAAAAAATCGGAGTT
GGAGTATCCCCGAGG
Found at i:58839 original size:28 final size:27
Alignment explanation
Indices: 58805--58875 Score: 97
Period size: 27 Copynumber: 2.6 Consensus size: 27
58795 TAAAATCGGA
**
58805 GTTGGAGTATCCCCTCGGAAATAACGGG
1 GTTGGAGTATCCCCGAGG-AATAACGGG
* *
58833 GTTGGAGTATCCCCGATGATTAACGGG
1 GTTGGAGTATCCCCGAGGAATAACGGG
58860 GTTGGAGTATCCCCGA
1 GTTGGAGTATCCCCGA
58876 TTGTGAAGAA
Statistics
Matches: 39, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
27 24 0.62
28 15 0.38
ACGTcount: A:0.23, C:0.21, G:0.32, T:0.24
Consensus pattern (27 bp):
GTTGGAGTATCCCCGAGGAATAACGGG
Found at i:58849 original size:108 final size:109
Alignment explanation
Indices: 58721--58927 Score: 337
Period size: 109 Copynumber: 1.9 Consensus size: 109
58711 AAAAAAAAAT
*
58721 CGGGATTGGAGTATCCCCGATGAAATAACGAGGTTGGAGTATCCTCGATTGTGAA-AAATTGGT-
1 CGGGATTGGAGTATCCCCGATG-AATAACGAGGTTGGAGTATCCCCGATTGTGAAGAAATTGGTG
58784 ATTTTTAGAAATAAAATCGGAGTTGGAGTATCCCCTCGGAAATAA
65 ATTTTTAGAAATAAAATCGGAGTTGGAGTATCCCCTCGGAAATAA
* * * *
58829 CGGGGTTGGAGTATCCCCGATGATTAACGGGGTTGGAGTATCCCCGATTGTGAAGAAATTGGTGT
1 CGGGATTGGAGTATCCCCGATGAATAACGAGGTTGGAGTATCCCCGATTGTGAAGAAATTGGTGA
*
58894 TTTTTGGAAATAAAATCGGAGTTGGAGTATCCCC
66 TTTTTAGAAATAAAATCGGAGTTGGAGTATCCCC
58928 GATTATAGAA
Statistics
Matches: 91, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
107 29 0.32
108 29 0.32
109 33 0.36
ACGTcount: A:0.29, C:0.14, G:0.29, T:0.29
Consensus pattern (109 bp):
CGGGATTGGAGTATCCCCGATGAATAACGAGGTTGGAGTATCCCCGATTGTGAAGAAATTGGTGA
TTTTTAGAAATAAAATCGGAGTTGGAGTATCCCCTCGGAAATAA
Found at i:58927 original size:54 final size:51
Alignment explanation
Indices: 58860--58990 Score: 165
Period size: 51 Copynumber: 2.5 Consensus size: 51
58850 GATTAACGGG
* * *
58860 GTTGGAGTATCCCCGATTGTGAAGAAATTGGTGTTTTTTGGAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTGTG-AGAAATTAGTG--TCTTGAAAATAAAATCGGA
*
58914 GTTGGAGTATCCCCGATTAT-AGAAAATTAGTGTCTTGAAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTGTGAG-AAATTAGTGTCTTGAAAATAAAATCGGA
*
58965 GTTGGAATATCCCCGATTGTGGAGAA
1 GTTGGAGTATCCCCGATTGT-GAGAA
58991 TTGAGAAACT
Statistics
Matches: 68, Mismatches: 6, Indels: 8
0.83 0.07 0.10
Matches are distributed among these distances:
51 35 0.51
52 4 0.06
53 10 0.15
54 19 0.28
ACGTcount: A:0.32, C:0.11, G:0.26, T:0.31
Consensus pattern (51 bp):
GTTGGAGTATCCCCGATTGTGAGAAATTAGTGTCTTGAAAATAAAATCGGA
Found at i:62335 original size:55 final size:54
Alignment explanation
Indices: 62248--63450 Score: 1417
Period size: 55 Copynumber: 21.3 Consensus size: 54
62238 AAAGTGTATT
* * **
62248 CTGCTCTTTGAGGACTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCATC
1 CTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGTGTC
* * *
62303 TTACTCTTTGAGGACTGAAAGGTGCCACCAACTTGTATGGGCTTT-AAGAGGTGTC
1 CTGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTGAA-AGGTGTC
* *
62358 CTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGAAAAGGCGTC
1 CTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTT----G-AAAGGTGTC
* * * *
62418 CCGCTCTTTGAGGACTGAAGGTGCCACCAACTTGAGTGGGCTTTAAAAGGTGTC
1 CTGCTCTTTGAGGACTGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGTGTC
* *
62472 CTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGAAAAGGCGTC
1 CTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTT----G-AAAGGTGTC
* * * *
62532 CCGCTCTTTAAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGTGTC
1 CTGCTCTTTGAGGACTGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGTGTC
*
62586 CTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTC
1 CTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGTGTC
* * * *
62641 CTGCTCTTCGGGGACTGAAAGGCGCCACCAACTTGTATGGGCTTT-AAGAGGTGTC
1 CTGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTGAA-AGGTGTC
* *
62696 CTACTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTC
1 CTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGTGTC
*
62751 CTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTGTC
1 CTGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTGAA-AGGTGTC
*
62806 CTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTC
1 CTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGTGTC
*
62861 CTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTGTC
1 CTGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTGAA-AGGTGTC
* *
62916 CTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGTGTC
1 CTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGTGTC
*
62971 CTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTGTC
1 CTGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTGAA-AGGTGTC
* *
63026 CTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGTGTC
1 CTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGTGTC
* * *
63081 CTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTC
1 CTGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTGAAAGGTGTC
*
63136 CTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGTGTC
1 CTGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTGAAAGGTGTC
* * *
63191 TTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGAGAAGGCGTC
1 CTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTT-----GA-AAGGTGTC
* * *
63252 CTGCTCTTCGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGTGAAGGCATC
1 CTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGT----G--TC
* * *
63313 CTACTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGTC
1 CTGCTCTTTGAGGACTGAAAGTGCCACCAACTTGTGTGGGCTTT-----G-AAAGGTGTC
* *
63373 CTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCGTC
1 CTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTT-----GA-AAGGTGTC
63434 CTGCTCTTTGAGGACTG
1 CTGCTCTTTGAGGACTG
63451 GGAAGAGTTA
Statistics
Matches: 1011, Mismatches: 83, Indels: 103
0.84 0.07 0.09
Matches are distributed among these distances:
54 78 0.08
55 631 0.62
56 33 0.03
59 52 0.05
60 89 0.09
61 122 0.12
62 1 0.00
66 5 0.00
ACGTcount: A:0.23, C:0.21, G:0.30, T:0.27
Consensus pattern (54 bp):
CTGCTCTTTGAGGACTGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGTGTC
Found at i:62735 original size:110 final size:110
Alignment explanation
Indices: 62248--63450 Score: 1653
Period size: 110 Copynumber: 10.7 Consensus size: 110
62238 AAAGTGTATT
* * ** * *
62248 CTGCTCTTTGAGGACT-AAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCATCTTACTCTTT
1 CTGCTCTTTGAGGACTGGAAAA-TGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTT
*
62312 GAGGACTGAAAGGTGCCACCAACTTGTATGGGCTTTAAGAGGTGTC
65 GAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTGTC
* *
62358 CTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGAAAAGGCGTCCCGCT
1 CTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTT----G-AAAGGTGTCCTGCT
* *
62423 CTTTGAGGACTG-AAGGTGCCACCAACTTGAGTGGGCTTTAAAAGGTGTC
61 CTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTGTC
* *
62472 CTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGAAAAGGCGTCCCGCT
1 CTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTT----G-AAAGGTGTCCTGCT
* *
62537 CTTTAAGGACTG-AAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGTGTC
61 CTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTGTC
*
62586 CTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTCG
1 CTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTG
* * *
62651 GGGACTGAAAGGCGCCACCAACTTGTATGGGCTTTAAGAGGTGTC
66 AGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTGTC
*
62696 CTACTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTG
1 CTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTG
*
62761 GGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTGTC
66 AGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTGTC
62806 CTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTG
1 CTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTG
*
62871 GGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTGTC
66 AGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTGTC
*
62916 CTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTG
1 CTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTG
*
62981 GGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTGTC
66 AGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTGTC
*
63026 CTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTG
1 CTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTG
* * *
63091 GGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTC
66 AGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTGTC
* * *
63136 CTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGTGTCTTGCTCTTT
1 CTGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTT
* *
63200 GAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTGAAAGGAGAAGGCGTC
65 GAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTT---A--AG-AGGTGTC
* * * * *
63252 CTGCTCTTCGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGTGAAGGCATCCTAC
1 CTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGT----G--TCCTGC
*
63317 TCTTTGAGGACTG-AAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGTC
60 TCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT--AA-G---AGGTGTC
* * *
63373 CTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCGTCCTGC
1 CTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTT-----GA-AAGGTGTCCTGC
63438 TCTTTGAGGACTG
60 TCTTTGAGGACTG
63451 GGAAGAGTTA
Statistics
Matches: 1020, Mismatches: 41, Indels: 53
0.92 0.04 0.05
Matches are distributed among these distances:
109 25 0.02
110 591 0.58
111 8 0.01
113 1 0.00
114 192 0.19
115 23 0.02
116 53 0.05
117 3 0.00
118 1 0.00
119 1 0.00
120 6 0.01
121 94 0.09
122 16 0.02
123 1 0.00
126 1 0.00
127 4 0.00
ACGTcount: A:0.23, C:0.21, G:0.30, T:0.27
Consensus pattern (110 bp):
CTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTG
AGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTGTC
Found at i:62769 original size:26 final size:26
Alignment explanation
Indices: 62740--62884 Score: 75
Period size: 26 Copynumber: 5.3 Consensus size: 26
62730 GTGTGGGCTT
62740 TGAAAGGTGTCCTGCTCTTTGGGGAC
1 TGAAAGGTGTCCTGCTCTTTGGGGAC
** *
62766 TGAAAGGTG-CCACCAACTTGTGTGGG-C
1 TGAAAGGTGTCCTGC-TCTT-TG-GGGAC
* *
62793 TTTAAGAGGTGTCCTGCTCTTTGAGGAC
1 -TGAA-AGGTGTCCTGCTCTTTGGGGAC
* ** *
62821 TGGAAA-ATG-CCACCAACTTGTGTGGG-C
1 T-GAAAGGTGTCCTGC-TCTT-TG-GGGAC
62848 TTTGAAAGGTGTCCTGCTCTTTGGGGAC
1 --TGAAAGGTGTCCTGCTCTTTGGGGAC
62876 TGAAAGGTG
1 TGAAAGGTG
62885 CCACCAACTT
Statistics
Matches: 85, Mismatches: 18, Indels: 32
0.63 0.13 0.24
Matches are distributed among these distances:
25 6 0.07
26 26 0.31
27 13 0.15
28 20 0.24
29 14 0.16
30 6 0.07
ACGTcount: A:0.20, C:0.19, G:0.32, T:0.29
Consensus pattern (26 bp):
TGAAAGGTGTCCTGCTCTTTGGGGAC
Found at i:69658 original size:28 final size:28
Alignment explanation
Indices: 69618--69689 Score: 92
Period size: 28 Copynumber: 2.6 Consensus size: 28
69608 AAAAAAAAAT
* *
69618 CGGGATTGGAGTATCCCC-TCGGAAGTAA
1 CGGGGTTGGAGTATCCCCGT-GGAAATAA
*
69646 CGGGGTTGGAGTATCCCCGTTGAAATAA
1 CGGGGTTGGAGTATCCCCGTGGAAATAA
*
69674 CGAGGTTGGAGTATCC
1 CGGGGTTGGAGTATCC
69690 TCGATTGTGA
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
28 38 0.97
29 1 0.03
ACGTcount: A:0.24, C:0.19, G:0.33, T:0.24
Consensus pattern (28 bp):
CGGGGTTGGAGTATCCCCGTGGAAATAA
Found at i:69738 original size:108 final size:109
Alignment explanation
Indices: 69613--69852 Score: 378
Period size: 108 Copynumber: 2.2 Consensus size: 109
69603 AGAAGAAAAA
* *
69613 AAAATCGG-GATTGGAGTATCCCCTCGGAAGTAACGGGGTTGGAGTATCCCCGTTGAAATAACGA
1 AAAATCGGAG-TTGGAGTATCCCCTCGGAAATAACGGGGTTGGAGTATCCCCGATG-AATAACGA
*
69677 GGTTGGAGTATCCTCGATTGTGAA-AAATTGGT-ATTTTTAGAAAT
64 GGTTGGAGTATCCCCGATTGTGAAGAAATTGGTGATTTTTAGAAAT
* *
69721 AAAATCGGAGTTGGAGTATCCCCTCGGAAATAACGGGGTTGGAGTATCCCCGATGATTAACGGGG
1 AAAATCGGAGTTGGAGTATCCCCTCGGAAATAACGGGGTTGGAGTATCCCCGATGAATAACGAGG
* *
69786 TTGGAGTATCCCCGATTGTGAAGAAATTGGTGTTTTTTGGAAAT
66 TTGGAGTATCCCCGATTGTGAAGAAATTGGTGATTTTTAGAAAT
69830 AAAATCGGAGTTGGAGTATCCCC
1 AAAATCGGAGTTGGAGTATCCCC
69853 GATTATAGAA
Statistics
Matches: 122, Mismatches: 7, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
107 29 0.24
108 59 0.48
109 34 0.28
ACGTcount: A:0.28, C:0.15, G:0.29, T:0.28
Consensus pattern (109 bp):
AAAATCGGAGTTGGAGTATCCCCTCGGAAATAACGGGGTTGGAGTATCCCCGATGAATAACGAGG
TTGGAGTATCCCCGATTGTGAAGAAATTGGTGATTTTTAGAAAT
Found at i:69764 original size:28 final size:27
Alignment explanation
Indices: 69730--69800 Score: 97
Period size: 27 Copynumber: 2.6 Consensus size: 27
69720 TAAAATCGGA
**
69730 GTTGGAGTATCCCCTCGGAAATAACGGG
1 GTTGGAGTATCCCCGAGG-AATAACGGG
* *
69758 GTTGGAGTATCCCCGATGATTAACGGG
1 GTTGGAGTATCCCCGAGGAATAACGGG
69785 GTTGGAGTATCCCCGA
1 GTTGGAGTATCCCCGA
69801 TTGTGAAGAA
Statistics
Matches: 39, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
27 24 0.62
28 15 0.38
ACGTcount: A:0.23, C:0.21, G:0.32, T:0.24
Consensus pattern (27 bp):
GTTGGAGTATCCCCGAGGAATAACGGG
Found at i:69852 original size:54 final size:51
Alignment explanation
Indices: 69785--69915 Score: 165
Period size: 51 Copynumber: 2.5 Consensus size: 51
69775 GATTAACGGG
* * *
69785 GTTGGAGTATCCCCGATTGTGAAGAAATTGGTGTTTTTTGGAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTGTG-AGAAATTAGTG--TCTTGAAAATAAAATCGGA
*
69839 GTTGGAGTATCCCCGATTAT-AGAAAATTAGTGTCTTGAAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTGTGAG-AAATTAGTGTCTTGAAAATAAAATCGGA
*
69890 GTTGGAATATCCCCGATTGTGGAGAA
1 GTTGGAGTATCCCCGATTGT-GAGAA
69916 TTGAGAAACT
Statistics
Matches: 68, Mismatches: 6, Indels: 8
0.83 0.07 0.10
Matches are distributed among these distances:
51 35 0.51
52 4 0.06
53 10 0.15
54 19 0.28
ACGTcount: A:0.32, C:0.11, G:0.26, T:0.31
Consensus pattern (51 bp):
GTTGGAGTATCCCCGATTGTGAGAAATTAGTGTCTTGAAAATAAAATCGGA
Found at i:72286 original size:33 final size:33
Alignment explanation
Indices: 72244--72308 Score: 94
Period size: 33 Copynumber: 2.0 Consensus size: 33
72234 AAAATTTCCA
***
72244 AATGTATCGATACAAAGATCCATGTATCGATAT
1 AATGTATCGATACAAAGAAAAATGTATCGATAT
*
72277 AATGTATCGATACACAGAAAAATGTATCGATA
1 AATGTATCGATACAAAGAAAAATGTATCGATA
72309 CATTTCCTTG
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 28 1.00
ACGTcount: A:0.43, C:0.14, G:0.15, T:0.28
Consensus pattern (33 bp):
AATGTATCGATACAAAGAAAAATGTATCGATAT
Found at i:72354 original size:19 final size:18
Alignment explanation
Indices: 72330--72429 Score: 103
Period size: 19 Copynumber: 5.9 Consensus size: 18
72320 CAGTAGCTAA
72330 TTATGTATCGATACAATAC
1 TTATGTATCGATACAA-AC
72349 TTATGTATCGATAC--A-
1 TTATGTATCGATACAAAC
72364 -T-TGTATCGATACAAAAC
1 TTATGTATCGATAC-AAAC
72381 TTATGTATCGATAC--A-
1 TTATGTATCGATACAAAC
72396 -T-TGTATCGATACAAAAC
1 TTATGTATCGATAC-AAAC
72413 TTATGTATCGATACAAA
1 TTATGTATCGATACAAA
72430 TTGTTGAATT
Statistics
Matches: 69, Mismatches: 0, Indels: 25
0.73 0.00 0.27
Matches are distributed among these distances:
13 22 0.32
14 2 0.03
16 4 0.06
18 5 0.07
19 36 0.52
ACGTcount: A:0.38, C:0.15, G:0.12, T:0.35
Consensus pattern (18 bp):
TTATGTATCGATACAAAC
Found at i:72370 original size:13 final size:13
Alignment explanation
Indices: 72352--72408 Score: 60
Period size: 13 Copynumber: 3.9 Consensus size: 13
72342 ACAATACTTA
72352 TGTATCGATACAT
1 TGTATCGATACAT
72365 TGTATCGATACAAAACTT
1 TGTATCGATAC---A--T
72383 ATGTATCGATACAT
1 -TGTATCGATACAT
72397 TGTATCGATACA
1 TGTATCGATACA
72409 AAACTTATGT
Statistics
Matches: 38, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
13 23 0.61
14 1 0.03
16 2 0.05
18 1 0.03
19 11 0.29
ACGTcount: A:0.35, C:0.16, G:0.14, T:0.35
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:72374 original size:32 final size:32
Alignment explanation
Indices: 72333--72427 Score: 181
Period size: 32 Copynumber: 3.0 Consensus size: 32
72323 TAGCTAATTA
*
72333 TGTATCGATACAATACTTATGTATCGATACAT
1 TGTATCGATACAAAACTTATGTATCGATACAT
72365 TGTATCGATACAAAACTTATGTATCGATACAT
1 TGTATCGATACAAAACTTATGTATCGATACAT
72397 TGTATCGATACAAAACTTATGTATCGATACA
1 TGTATCGATACAAAACTTATGTATCGATACA
72428 AATTGTTGAA
Statistics
Matches: 62, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
32 62 1.00
ACGTcount: A:0.37, C:0.16, G:0.13, T:0.35
Consensus pattern (32 bp):
TGTATCGATACAAAACTTATGTATCGATACAT
Found at i:72491 original size:21 final size:20
Alignment explanation
Indices: 72465--72543 Score: 88
Period size: 21 Copynumber: 3.8 Consensus size: 20
72455 GTTGGGACCC
72465 TGTATCGATACATTTGTAGAA
1 TGTATCGATACATTTGTA-AA
***
72486 TGTATCGATACATTCCACAAA
1 TGTATCGATACATT-TGTAAA
72507 TGTATCGATACATTCT-TCAAA
1 TGTATCGATACATT-TGT-AAA
72528 TGTATCGATACATTTG
1 TGTATCGATACATTTG
72544 GATAATTTTT
Statistics
Matches: 50, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
20 1 0.02
21 48 0.96
22 1 0.02
ACGTcount: A:0.33, C:0.16, G:0.14, T:0.37
Consensus pattern (20 bp):
TGTATCGATACATTTGTAAA
Found at i:74161 original size:24 final size:24
Alignment explanation
Indices: 74134--74189 Score: 94
Period size: 24 Copynumber: 2.3 Consensus size: 24
74124 TTGTTTCATA
*
74134 TGCATTTGCCTCTTTATTGATGTT
1 TGCATTTGCCTCTTTATTGATGCT
*
74158 TGCATTGGCCTCTTTATTGATGCT
1 TGCATTTGCCTCTTTATTGATGCT
74182 TGCATTTG
1 TGCATTTG
74190 TATCATTTCA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.12, C:0.18, G:0.20, T:0.50
Consensus pattern (24 bp):
TGCATTTGCCTCTTTATTGATGCT
Found at i:74275 original size:112 final size:113
Alignment explanation
Indices: 74046--74275 Score: 309
Period size: 112 Copynumber: 2.0 Consensus size: 113
74036 ACAATAATAA
* * * *
74046 GCATTTGCCACTTTATTGATGCTTGCTTTTGCATCATTTCATGCACATTTGCACCATTAGACCAT
1 GCATTGGCCACTTTATTGATGCTTGCATTTGCATCATTTCATACACATTTGCACCATTAGACCAC
* * * *
74111 ATTGATATTTGCATTGTTTCATATGCATTTGCCTCTTTATTGATGTTT
66 ATTGACATTTGCATTGTTTCAAATGCATTTGCCTCTTTACTAATGTTT
* * **
74159 GCATTGGCCTCTTTATTGATGCTTGCATTTGTATCATTTCATACACATTTGCACC-TTAGATGAC
1 GCATTGGCCACTTTATTGATGCTTGCATTTGCATCATTTCATACACATTTGCACCATTAGACCAC
* * * *
74223 ATTGGCATTTGCTTTGTTTCAAATGCATTTGCCTCTTTGCTAATTTTT
66 ATTGACATTTGCATTGTTTCAAATGCATTTGCCTCTTTACTAATGTTT
74271 GCATT
1 GCATT
74276 AGCATCATTT
Statistics
Matches: 101, Mismatches: 16, Indels: 1
0.86 0.14 0.01
Matches are distributed among these distances:
112 51 0.50
113 50 0.50
ACGTcount: A:0.20, C:0.20, G:0.15, T:0.46
Consensus pattern (113 bp):
GCATTGGCCACTTTATTGATGCTTGCATTTGCATCATTTCATACACATTTGCACCATTAGACCAC
ATTGACATTTGCATTGTTTCAAATGCATTTGCCTCTTTACTAATGTTT
Found at i:75726 original size:51 final size:51
Alignment explanation
Indices: 75628--75726 Score: 130
Period size: 51 Copynumber: 1.9 Consensus size: 51
75618 TGGAGTATAT
* *
75628 TCCCCGATGGTGGAAAATCGATGGTTTGAAAATAAAATTGGGCTTGGATTA
1 TCCCCGATGGTGGAAAATCAATGGTTTGAAAATAAAATCGGGCTTGGATTA
* *
75679 TCCCCGATTGTGGAAAATCAAT-GTTTTAGAAATAAAATCGAGG-TTGGA
1 TCCCCGATGGTGGAAAATCAATGGTTTGA-AAATAAAATCG-GGCTTGGA
75727 GCATCTCTTA
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
50 5 0.12
51 35 0.83
52 2 0.05
ACGTcount: A:0.33, C:0.12, G:0.25, T:0.29
Consensus pattern (51 bp):
TCCCCGATGGTGGAAAATCAATGGTTTGAAAATAAAATCGGGCTTGGATTA
Found at i:75821 original size:79 final size:76
Alignment explanation
Indices: 75681--76077 Score: 352
Period size: 79 Copynumber: 5.0 Consensus size: 76
75671 TTGGATTATC
* * *
75681 CCCGATTGTGGAAAATCAATGTTTTAGAAATAAAATCGAGGTTGGAGCAT-CTCTTAAAAAATAA
1 CCCGATTGT-GAAAATCGATGTTTTAGAAATAAAATCGAGGTTGGAGTATCCTC-T-CAAAATAA
75745 CGGGGTTAGAGTATT
63 CGGGGTTAGAGTA-T
* *
75760 CCCGATTGTAGAAAATTGATGTTTTAGAAATAAAAATC-AGGGTTGGAGTATCGTCTCAAAATAA
1 CCCGATTGT-GAAAATCGATGTTTTAGAAAT-AAAATCGA-GGTTGGAGTATCCTCTCAAAATAA
** *
75824 CAAGGTTGGAGTAT
63 CGGGGTTAGAGTAT
* * * * * * * *
75838 CCTCAATGGTGAAAAATTGATGCTTTGGAAATAAAATCGAGATTGGAGTATCCCCTCGAAATAAC
1 CC-CGATTGTG-AAAATCGATGTTTTAGAAATAAAATCGAGGTTGGAGTATCCTCTCAAAATAAC
* *
75903 GAGGTTGGAGTAT
64 GGGGTTAGAGTAT
* * *
75916 CCCCGATCGTAAAAATCGGTGTTTTAGAAATAAAATCG-GAGTTGGAGTATCCTCTCAAAAATAA
1 -CCCGATTGTGAAAATCGATGTTTTAGAAATAAAATCGAG-GTTGGAGTATCCTCTC-AAAATAA
** *
75980 TAGGGTTAAAGTAT
63 CGGGGTTAGAGTAT
* * * *
75994 CCCTGATTATGAAAAATCGATGTTTTAGAAATAAAAATCGAGGTTAGAGTATCTTTTCAAAAATA
1 CCC-GATTGTG-AAAATCGATGTTTTAGAAAT-AAAATCGAGGTTGGAGTATCCTCTC-AAAATA
76059 ACGGGGGTT-GAAGTAT
62 AC-GGGGTTAG-AGTAT
76075 CCC
1 CCC
76078 TTCGAAATAA
Statistics
Matches: 260, Mismatches: 43, Indels: 28
0.79 0.13 0.08
Matches are distributed among these distances:
76 1 0.00
77 40 0.15
78 67 0.26
79 91 0.35
80 45 0.17
81 16 0.06
ACGTcount: A:0.37, C:0.13, G:0.22, T:0.29
Consensus pattern (76 bp):
CCCGATTGTGAAAATCGATGTTTTAGAAATAAAATCGAGGTTGGAGTATCCTCTCAAAATAACGG
GGTTAGAGTAT
Found at i:76213 original size:79 final size:79
Alignment explanation
Indices: 76064--76294 Score: 297
Period size: 79 Copynumber: 2.9 Consensus size: 79
76054 AAATAACGGG
* * * *
76064 GGTTGAAGTATCCCTTCG-AAATAATGGGGTTGGAGTATCCCCGATTGT-GAAAATCGGTGTTTT
1 GGTTGGAGTATCCCCTCGAAAATAATGGGGTTAGAGTATCCCCGATGGTGGAAAATCGGTGTTTT
*
76127 GAAAATAAAATCTA
66 GAAAATAAAATCGA
* * * *
76141 GGTTGGAGTATCCCCTCGAAAATAATAGGGTTACAATATCCCCGATGGTGGAAAATCAGTGTTTT
1 GGTTGGAGTATCCCCTCGAAAATAATGGGGTTAGAGTATCCCCGATGGTGGAAAATCGGTGTTTT
*
76206 GAAAATAAAATCGG
66 GAAAATAAAATCGA
* ** * *
76220 GGTTGGAGTATCTCCTAAAAAATAACGGGGTTAGAGTATCCCCGATGGTGGAAAATCGGTATTTT
1 GGTTGGAGTATCCCCTCGAAAATAATGGGGTTAGAGTATCCCCGATGGTGGAAAATCGGTGTTTT
76285 -AGAAATAAAA
66 GA-AAATAAAA
76295 ACATGAATAA
Statistics
Matches: 132, Mismatches: 19, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
77 16 0.12
78 26 0.20
79 90 0.68
ACGTcount: A:0.34, C:0.13, G:0.25, T:0.28
Consensus pattern (79 bp):
GGTTGGAGTATCCCCTCGAAAATAATGGGGTTAGAGTATCCCCGATGGTGGAAAATCGGTGTTTT
GAAAATAAAATCGA
Found at i:76214 original size:186 final size:184
Alignment explanation
Indices: 75883--76262 Score: 493
Period size: 186 Copynumber: 2.1 Consensus size: 184
75873 ATCGAGATTG
75883 GAGTATCCCCTCGAAATAACGAGGTTGGAGTATCCCCGATCGTAAAAATCGGTGTTTTAGAAATA
1 GAGTATCCCCTCGAAATAACGAGGTTGGAGTATCCCCGATCGTAAAAATCGGTGTTTTAGAAATA
* * * *
75948 AAATCGGAGTTGGAGTATCCTCTCAAAAATAATAGGGTTAAAGTATCCCTGATTATGAAAAATCG
66 AAATCAGAGTTGGAGTATCCCCTCAAAAATAATAGGGTTAAAGTATCCCCGATGATGAAAAATCG
** *
76013 ATGTTTTAGAAATAAAAATCGAGGTTAGAGTATCTTTTCAAAAATAACGGGGGTT-
131 ATGTTTTAGAAAT-AAAATCGAGGTTAGAGTATCTCCTAAAAAATAAC-GGGGTTA
* * * * *
76068 GAAGTATCCCTTCGAAATAATGGGGTTGGAGTATCCCCGATTGTGAAAATCGGTGTTTT-GAAAA
1 G-AGTATCCCCTCGAAATAACGAGGTTGGAGTATCCCCGATCGTAAAAATCGGTGTTTTAG-AAA
* * *
76132 TAAAATCTAG-GTTGGAGTATCCCCTCGAAAATAATAGGGTTACAA-TATCCCCGATGGTGGAAA
64 TAAAATC-AGAGTTGGAGTATCCCCTCAAAAATAATAGGGTTA-AAGTATCCCCGATGATGAAAA
* *
76195 ATC-AGTGTTTT-GAAAATAAAATCGGGGTTGGAGTATCTCCTAAAAAATAACGGGGTTA
127 ATCGA-TGTTTTAG-AAATAAAATCGAGGTTAGAGTATCTCCTAAAAAATAACGGGGTTA
76253 GAGTATCCCC
1 GAGTATCCCC
76263 GATGGTGGAA
Statistics
Matches: 170, Mismatches: 18, Indels: 15
0.84 0.09 0.07
Matches are distributed among these distances:
184 14 0.08
185 34 0.20
186 119 0.70
187 3 0.02
ACGTcount: A:0.34, C:0.14, G:0.23, T:0.28
Consensus pattern (184 bp):
GAGTATCCCCTCGAAATAACGAGGTTGGAGTATCCCCGATCGTAAAAATCGGTGTTTTAGAAATA
AAATCAGAGTTGGAGTATCCCCTCAAAAATAATAGGGTTAAAGTATCCCCGATGATGAAAAATCG
ATGTTTTAGAAATAAAATCGAGGTTAGAGTATCTCCTAAAAAATAACGGGGTTA
Found at i:78698 original size:50 final size:50
Alignment explanation
Indices: 78625--78758 Score: 187
Period size: 50 Copynumber: 2.7 Consensus size: 50
78615 AAAATGCCTG
* * *
78625 AATGTATCGATACATTGAGAAATGTATCGATACATTTAGGTAAAACCCAA
1 AATGTATCGATACAATGAAAAATGTATCGATACATCTAGGTAAAACCCAA
* *
78675 AATGTATCGATAAAATGAAAAATGTATCGATACATCTGGGTAAAACCCAA
1 AATGTATCGATACAATGAAAAATGTATCGATACATCTAGGTAAAACCCAA
* * * *
78725 AATGTATTGATTCAATGAAGAATGTATTGATACA
1 AATGTATCGATACAATGAAAAATGTATCGATACA
78759 AATTGTGAAA
Statistics
Matches: 74, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
50 74 1.00
ACGTcount: A:0.43, C:0.12, G:0.16, T:0.28
Consensus pattern (50 bp):
AATGTATCGATACAATGAAAAATGTATCGATACATCTAGGTAAAACCCAA
Found at i:79282 original size:43 final size:43
Alignment explanation
Indices: 79059--79301 Score: 168
Period size: 43 Copynumber: 5.7 Consensus size: 43
79049 ATGTGGTTCG
** *
79059 TCCCGACCAACACTTTTCTAACTTGTTGGTACGTATGGTTTTG
1 TCCCGACCAACACCCTTCTAACTTGTTGGTACGTATGGTTTTA
* *** * * * *
79102 TCCTGGTTAACACCCCTCTGA-TTCGTTGGTAGGTATGGTTTCA
1 TCCCGACCAACACCCTTCTAACTT-GTTGGTACGTATGGTTTTA
* * * * **
79145 T-CCTAGCTAATACCCTTCTAACTTATTGGTACGTATGGTTTCG
1 TCCCGA-CCAACACCCTTCTAACTTGTTGGTACGTATGGTTTTA
** * * *
79188 TAACGACCAACACCCTTCTAACTTGTTGGCACATATGG-TTTC
1 TCCCGACCAACACCCTTCTAACTTGTTGGTACGTATGGTTTTA
* ** * *
79230 GCAATGACCAACACCCTTCTAACTTGTTGGCACATATGGTTTTA
1 TC-CCGACCAACACCCTTCTAACTTGTTGGTACGTATGGTTTTA
* * *
79274 TCCCGACCAACATCTTTCTGACTTGTTG
1 TCCCGACCAACACCCTTCTAACTTGTTG
79302 AATTGTATGG
Statistics
Matches: 154, Mismatches: 40, Indels: 12
0.75 0.19 0.06
Matches are distributed among these distances:
42 5 0.03
43 141 0.92
44 8 0.05
ACGTcount: A:0.21, C:0.26, G:0.17, T:0.36
Consensus pattern (43 bp):
TCCCGACCAACACCCTTCTAACTTGTTGGTACGTATGGTTTTA
Found at i:79426 original size:38 final size:38
Alignment explanation
Indices: 79370--79448 Score: 95
Period size: 38 Copynumber: 2.1 Consensus size: 38
79360 AACCAACACT
* *
79370 TTTCCTTTGTCGACTTGTATAGTTTTGTCCTAATCAAC
1 TTTCCTTTGTCGACTTGTATAGTTTCGTCCTAACCAAC
* ** * *
79408 TTTCCTTTGTTGGTTTGTATGGTTTCGTCCTAGCCAAC
1 TTTCCTTTGTCGACTTGTATAGTTTCGTCCTAACCAAC
79446 TTT
1 TTT
79449 TTTCTTTCGT
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
38 34 1.00
ACGTcount: A:0.14, C:0.20, G:0.16, T:0.49
Consensus pattern (38 bp):
TTTCCTTTGTCGACTTGTATAGTTTCGTCCTAACCAAC
Found at i:79480 original size:41 final size:41
Alignment explanation
Indices: 79342--79518 Score: 155
Period size: 41 Copynumber: 4.4 Consensus size: 41
79332 TTTTTTTTGG
* * * * *
79342 CTCATACGGTTTCATCCCAACCAACACTTTTCCTTTGTCGA
1 CTCATATGGTTTCATCCTAGCCAACTCTTTTCCTTTGTTGA
** * ** ** *
79383 CTTGTATAGTTTTGTCCTAATCAA--C-TTTCCTTTGTTGG
1 CTCATATGGTTTCATCCTAGCCAACTCTTTTCCTTTGTTGA
* ** * *
79421 TTTGTATGGTTTCGTCCTAGCCAACT-TTTTTCTTTCGTTGA
1 CTCATATGGTTTCATCCTAGCCAACTCTTTTCCTTT-GTTGA
79462 CTCATATGGTTTCATCCTAGCCAACTCTTTTCCTTTGTTGA
1 CTCATATGGTTTCATCCTAGCCAACTCTTTTCCTTTGTTGA
79503 CTCATATGGTTTCATC
1 CTCATATGGTTTCATC
79519 TCGGTTAACT
Statistics
Matches: 109, Mismatches: 22, Indels: 10
0.77 0.16 0.07
Matches are distributed among these distances:
38 30 0.28
39 1 0.01
40 7 0.06
41 63 0.58
42 8 0.07
ACGTcount: A:0.17, C:0.25, G:0.14, T:0.45
Consensus pattern (41 bp):
CTCATATGGTTTCATCCTAGCCAACTCTTTTCCTTTGTTGA
Found at i:79739 original size:43 final size:43
Alignment explanation
Indices: 79545--79914 Score: 203
Period size: 43 Copynumber: 8.7 Consensus size: 43
79535 TGTTGGTACA
* * * **
79545 TATGGTTTCATCCCAACCAGCACC-TTCTAACTTATTGGTACG
1 TATGGTTTCATCCCGACCAACACCTTTCTAACTTGTTAATACG
* * * * **
79587 TATGGTTTCGTCCCGACCAACACCCTTC-CACTTGCTGGTACG
1 TATGGTTTCATCCCGACCAACACCTTTCTAACTTGTTAATACG
* * * * *
79629 TATAGTTTCA-CCCCAGCCAATACCTTTCTAAATCGTTAATACG
1 TATGGTTTCATCCCGA-CCAACACCTTTCTAACTTGTTAATACG
** ** * *
79672 TATGGTTTTGTCTTGGCCAACACCTTTCTAACTTTTTAATACG
1 TATGGTTTCATCCCGACCAACACCTTTCTAACTTGTTAATACG
* * ** *
79715 TATGGTTTTATCCCGACCAGCACCTTTCTAACTTGTTGGTACA
1 TATGGTTTCATCCCGACCAACACCTTTCTAACTTGTTAATACG
** * * ** * *
79758 TATGGTTTCATCTTGACTAACACCCTTCTAACTCATTGATACA
1 TATGGTTTCATCCCGACCAACACCTTTCTAACTTGTTAATACG
* * * * ** *
79801 TATGG-TT-AGTCTCAACCAACACCCTTCTAACTCGTTGGTATG
1 TATGGTTTCA-TCCCGACCAACACCTTTCTAACTTGTTAATACG
* ** * * **
79843 TATGGTTTTATCTTGGCCAACACCCTTCTAACTTGTTGGTAAC-
1 TATGGTTTCATCCCGACCAACACCTTTCTAACTTGTTAAT-ACG
** *
79886 TATGGTTTCATCTTGACCAATACCTTTCT
1 TATGGTTTCATCCCGACCAACACCTTTCT
79915 GACTCATTGA
Statistics
Matches: 258, Mismatches: 62, Indels: 15
0.77 0.19 0.04
Matches are distributed among these distances:
41 5 0.02
42 83 0.32
43 167 0.65
44 3 0.01
ACGTcount: A:0.23, C:0.26, G:0.14, T:0.36
Consensus pattern (43 bp):
TATGGTTTCATCCCGACCAACACCTTTCTAACTTGTTAATACG
Found at i:79820 original size:128 final size:128
Alignment explanation
Indices: 79688--79935 Score: 329
Period size: 128 Copynumber: 1.9 Consensus size: 128
79678 TTTGTCTTGG
* ** * *
79688 CCAACACCTTTCTAACTTTTTAATACGTATGGTTTTATCCCGACCAGCACCTTTCTAACTTGTTG
1 CCAACACCCTTCTAACTCGTTAATACGTATGGTTTTATCCCGACCAACACCCTTCTAACTTGTTG
*
79753 GT-ACATATGGTTTCATCTTGACTAACACCCTTCTAACTCATTGA-TACATATGGTTAGTCTCAA
66 GTAAC-TATGGTTTCATCTTGACCAACACCCTTCTAACTCATTGACT-CATATGGTTAGTCTCAA
** * ** *
79816 CCAACACCCTTCTAACTCGTTGGTATGTATGGTTTTATCTTGGCCAACACCCTTCTAACTTGTTG
1 CCAACACCCTTCTAACTCGTTAATACGTATGGTTTTATCCCGACCAACACCCTTCTAACTTGTTG
* * *
79881 GTAACTATGGTTTCATCTTGACCAATACCTTTCTGACTCATTGACTCATATGGTT
66 GTAACTATGGTTTCATCTTGACCAACACCCTTCTAACTCATTGACTCATATGGTT
79936 TCATCCCGGT
Statistics
Matches: 103, Mismatches: 15, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
128 100 0.97
129 3 0.03
ACGTcount: A:0.24, C:0.25, G:0.13, T:0.38
Consensus pattern (128 bp):
CCAACACCCTTCTAACTCGTTAATACGTATGGTTTTATCCCGACCAACACCCTTCTAACTTGTTG
GTAACTATGGTTTCATCTTGACCAACACCCTTCTAACTCATTGACTCATATGGTTAGTCTCAA
Found at i:79892 original size:85 final size:84
Alignment explanation
Indices: 79541--79876 Score: 262
Period size: 85 Copynumber: 3.9 Consensus size: 84
79531 TCTTTGTTGG
* ** ** ** *
79541 TACATATGGTTTCATCCCAACCAGCA-CCTTCTAACTTATTGGTACGTATGGTTTCGTCCCGACC
1 TACATATGG-TT-ATCCCAACCAACACCCTTCTAACTCGTTGGTACGTATGGTTTTATCTTGGCC
* ** *
79605 AACACCCTTC-CACTTGCTGG
64 AACACCCTTCTAACTTATTGA
* * * * * * * ** *
79625 TACGTATAGTTTCACCCCAGCCAATACCTTTCTAAATCGTTAATACGTATGGTTTTGTCTTGGCC
1 TACATAT-GGTT-ATCCCAACCAACACCCTTCTAACTCGTTGGTACGTATGGTTTTATCTTGGCC
* * *
79690 AACACCTTTCTAACTTTTTAA
64 AACACCCTTCTAACTTATTGA
* * * * * * * * *
79711 TACGTATGGTTTTATCCCGACCAGCACCTTTCTAACTTGTTGGTACATATGGTTTCATCTTGACT
1 TACATATGG--TTATCCCAACCAACACCCTTCTAACTCGTTGGTACGTATGGTTTTATCTTGGCC
*
79776 AACACCCTTCTAACTCATTGA
64 AACACCCTTCTAACTTATTGA
* *
79797 TACATATGGTTAGTCTCAACCAACACCCTTCTAACTCGTTGGTATGTATGGTTTTATCTTGGCCA
1 TACATATGGTTA-TCCCAACCAACACCCTTCTAACTCGTTGGTACGTATGGTTTTATCTTGGCCA
79862 ACACCCTTCTAACTT
65 ACACCCTTCTAACTT
79877 GTTGGTAACT
Statistics
Matches: 193, Mismatches: 53, Indels: 11
0.75 0.21 0.04
Matches are distributed among these distances:
84 21 0.11
85 95 0.49
86 75 0.39
87 2 0.01
ACGTcount: A:0.24, C:0.27, G:0.14, T:0.36
Consensus pattern (84 bp):
TACATATGGTTATCCCAACCAACACCCTTCTAACTCGTTGGTACGTATGGTTTTATCTTGGCCAA
CACCCTTCTAACTTATTGA
Found at i:79892 original size:171 final size:170
Alignment explanation
Indices: 79534--79897 Score: 401
Period size: 171 Copynumber: 2.1 Consensus size: 170
79524 TAACTTTTCT
* *
79534 TTGTTGGTACATATGGTTTCATCCCAACCAGCACCTTCTAACTTATTGGTACGTATGGTTTCGTC
1 TTGTTGGTACATATGGTTTCATCCCAACCAGCACCTTCTAACTTATTGGTACATATGGTTTCATC
* ** * * * * * *
79599 CCGACCAACACCCTTCCACTTGCTGGTACGTATAGTTTCACCCCAGCCAATACCTTTCTAAATCG
66 CCGACCAACACCCTTCAACTCACTGATACATATAGGTTCACCCCAACCAACACCCTTCTAAATCG
* *
79664 TTAATACGTATGGTTTTGTCTTGGCCAACACCTTTCTAAC
131 TTAATACGTATGGTTTTATCTTGGCCAACACCCTTCTAAC
* ** * * * *
79704 TTTTTAATACGTATGGTTTTATCCCGACCAGCACCTTTCTAACTTGTTGGTACATATGGTTTCAT
1 TTGTTGGTACATATGGTTTCATCCCAACCAGCACC-TTCTAACTTATTGGTACATATGGTTTCAT
** * * * * *
79769 CTTGACTAACACCCTTCTAACTCATTGATACATAT-GGTT-AGTCTCAACCAACACCCTTCTAAC
65 CCCGACCAACACCCTTC-AACTCACTGATACATATAGGTTCA-CCCCAACCAACACCCTTCTAAA
** *
79832 TCGTTGGTATGTATGGTTTTATCTTGGCCAACACCCTTCTAAC
128 TCGTTAATACGTATGGTTTTATCTTGGCCAACACCCTTCTAAC
79875 TTGTTGGTA-ACTATGGTTTCATC
1 TTGTTGGTACA-TATGGTTTCATC
79898 TTGACCAATA
Statistics
Matches: 155, Mismatches: 35, Indels: 7
0.79 0.18 0.04
Matches are distributed among these distances:
170 30 0.19
171 114 0.74
172 11 0.07
ACGTcount: A:0.23, C:0.26, G:0.15, T:0.37
Consensus pattern (170 bp):
TTGTTGGTACATATGGTTTCATCCCAACCAGCACCTTCTAACTTATTGGTACATATGGTTTCATC
CCGACCAACACCCTTCAACTCACTGATACATATAGGTTCACCCCAACCAACACCCTTCTAAATCG
TTAATACGTATGGTTTTATCTTGGCCAACACCCTTCTAAC
Found at i:79967 original size:38 final size:38
Alignment explanation
Indices: 79925--80058 Score: 115
Period size: 38 Copynumber: 3.4 Consensus size: 38
79915 GACTCATTGA
*
79925 CTCATATGGTTTCATCCCGGTTAACTTTTCTTTGTTGG
1 CTCATATGGTTTCATCCCGGTAAACTTTTCTTTGTTGG
** ** *
79963 CTCATATGGTTTTGTCCCTGCCAACACTTTTCTTTTGTTGA
1 CTCATATGGTTTCATCCC-GGTAA-ACTTTTC-TTTGTTGG
** * * *
80004 CTTTTATGGTTTCATCCCAGTCAACTTTCCTTTGTTGG
1 CTCATATGGTTTCATCCCGGTAAACTTTTCTTTGTTGG
* * *
80042 TTCATACGATTTCATCC
1 CTCATATGGTTTCATCC
80059 TGACTAACAT
Statistics
Matches: 72, Mismatches: 21, Indels: 6
0.73 0.21 0.06
Matches are distributed among these distances:
38 35 0.49
39 8 0.11
40 8 0.11
41 21 0.29
ACGTcount: A:0.15, C:0.24, G:0.15, T:0.46
Consensus pattern (38 bp):
CTCATATGGTTTCATCCCGGTAAACTTTTCTTTGTTGG
Found at i:80073 original size:79 final size:79
Alignment explanation
Indices: 79924--80118 Score: 194
Period size: 79 Copynumber: 2.5 Consensus size: 79
79914 TGACTCATTG
* * * * * * **
79924 ACTCATATGGTTTCATCCCGGTTAACTTTTCTTTGTTGGCTCATATGGTTTTGTCCCTGCCAACA
1 ACTCGTATGGTTTCATCCCAGTCAACTTTCCTTTGTTGGCTCATACGATTTCATCCCTGCCAACA
* * *
79989 CTTTTCTTTTGTTG
66 CTTTTCCTTCGTTA
** * *
80003 ACTTTTATGGTTTCATCCCAGTCAACTTTCCTTTGTTGGTTCATACGATTTCAT-CCTGACTAAC
1 ACTCGTATGGTTTCATCCCAGTCAACTTTCCTTTGTTGGCTCATACGATTTCATCCCTG-CCAAC
*
80067 ATTTTTCCTTCGTTA
65 ACTTTTCCTTCGTTA
* * **
80082 ACTCGTACGGTTTAATCCCAAACAACTTTCCTTTGTT
1 ACTCGTATGGTTTCATCCCAGTCAACTTTCCTTTGTT
80119 AGTTTGTACA
Statistics
Matches: 94, Mismatches: 21, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
78 4 0.04
79 90 0.96
ACGTcount: A:0.18, C:0.24, G:0.13, T:0.45
Consensus pattern (79 bp):
ACTCGTATGGTTTCATCCCAGTCAACTTTCCTTTGTTGGCTCATACGATTTCATCCCTGCCAACA
CTTTTCCTTCGTTA
Found at i:80306 original size:43 final size:43
Alignment explanation
Indices: 80259--80590 Score: 181
Period size: 43 Copynumber: 7.9 Consensus size: 43
80249 ATTTTGTCCT
*
80259 GACCAACACCCTTTTAACTTATTGGTACGTATGGTTTCATCCC
1 GACCAACACCCTTTTAACTTGTTGGTACGTATGGTTTCATCCC
* * * *
80302 GACCAACACCATTTTAACTCGTTAGTACGTATAG--T--T--C
1 GACCAACACCCTTTTAACTTGTTGGTACGTATGGTTTCATCCC
* * * *
80339 G--TAACA--CTTTCTAATTTGTTGGTACATATGCTTT--TGCCC
1 GACCAACACCCTTT-TAACTTGTTGGTACGTATGGTTTCAT-CCC
* * * * *
80378 TAGCCAACA-CCTTTCTAACTTGTTAGTATGTATGGTTTCGTCTC
1 GA-CCAACACCCTTT-TAACTTGTTGGTACGTATGGTTTCATCCC
* ** *
80422 GGCCAACACTTTTTTAACTTGTTAGTACGTATGGTTTCATCCC
1 GACCAACACCCTTTTAACTTGTTGGTACGTATGGTTTCATCCC
** * * * * * **
80465 AGA-CAATGCCTTTTTAACCTATTAGTACATATGGTTTTGTCCC
1 -GACCAACACCCTTTTAACTTGTTGGTACGTATGGTTTCATCCC
* * **
80508 -AGCCAACACCCTCTTAACTTGTTGGTACGTATGGTTTTATCTT
1 GA-CCAACACCCTTTTAACTTGTTGGTACGTATGGTTTCATCCC
* * ***
80551 GACCAACACCCTTCTAACTCGTTGGTTTATATGGTTTCAT
1 GACCAACACCCTTTTAACTTGTTGGTACGTATGGTTTCAT
80591 TCATATTAAC
Statistics
Matches: 217, Mismatches: 55, Indels: 34
0.71 0.18 0.11
Matches are distributed among these distances:
33 3 0.01
34 14 0.06
35 4 0.02
36 2 0.01
37 2 0.01
39 2 0.01
41 2 0.01
42 4 0.02
43 176 0.81
44 7 0.03
45 1 0.00
ACGTcount: A:0.23, C:0.23, G:0.15, T:0.39
Consensus pattern (43 bp):
GACCAACACCCTTTTAACTTGTTGGTACGTATGGTTTCATCCC
Found at i:80717 original size:41 final size:41
Alignment explanation
Indices: 80672--80783 Score: 120
Period size: 41 Copynumber: 2.7 Consensus size: 41
80662 TGGTTTGTAT
*
80672 GGTTTCACTCCAGCCAACATCTCACCTTTTGTTAACACGAA
1 GGTTTCACTCCAGTCAACATCTCACCTTTTGTTAACACGAA
* * * * * * *
80713 GGTTTTAACTCGA-TCAACTTCTCACCTTGTGTTGACATGAT
1 GG-TTTCACTCCAGTCAACATCTCACCTTTTGTTAACACGAA
80754 GGTTTCAC-CCTAGTCAACATCTCACCTTTT
1 GGTTTCACTCC-AGTCAACATCTCACCTTTT
80784 TATTGATGTG
Statistics
Matches: 56, Mismatches: 12, Indels: 6
0.76 0.16 0.08
Matches are distributed among these distances:
39 1 0.02
40 6 0.11
41 41 0.73
42 8 0.14
ACGTcount: A:0.23, C:0.29, G:0.13, T:0.35
Consensus pattern (41 bp):
GGTTTCACTCCAGTCAACATCTCACCTTTTGTTAACACGAA
Found at i:80810 original size:42 final size:41
Alignment explanation
Indices: 80726--81020 Score: 329
Period size: 41 Copynumber: 7.1 Consensus size: 41
80716 TTTAACTCGA
* * **
80726 TCAACTTCTCACCTTGTGTTGACATGATGGTTTCACCCTAG
1 TCAACATCTCACCTTTTGTTGATGTGATGGTTTCACCCTAG
* *
80767 TCAACATCTCACCTTTTTATTGATGTGATGGTTTCACCTTAG
1 TCAACATCTCACC-TTTTGTTGATGTGATGGTTTCACCCTAG
* * * * *
80809 TCAATATGTCACCCTTTTATTGATGTGATGGTTTCACCTTGG
1 TCAACATCTCA-CCTTTTGTTGATGTGATGGTTTCACCCTAG
* * * *
80851 TCAACATCTCACCTTTTTTTGATGTAATGGTTTCATCCTGG
1 TCAACATCTCACCTTTTGTTGATGTGATGGTTTCACCCTAG
*
80892 TCAACATCTCACCTTTTGTTGATGTGATGGTTTCACCCTGG
1 TCAACATCTCACCTTTTGTTGATGTGATGGTTTCACCCTAG
* * * **
80933 TCAACATCTCACCCTTTGTTAATGTGATAGTTTTTCCCTAG
1 TCAACATCTCACCTTTTGTTGATGTGATGGTTTCACCCTAG
** * * *
80974 TCAATGTCTCACCCTTTTGTGGAGGTAATGGTTTCACCCTAG
1 TCAACATCTCA-CCTTTTGTTGATGTGATGGTTTCACCCTAG
81016 TCAAC
1 TCAAC
81021 TTCTTTTTAA
Statistics
Matches: 216, Mismatches: 35, Indels: 5
0.84 0.14 0.02
Matches are distributed among these distances:
41 120 0.56
42 94 0.44
43 2 0.01
ACGTcount: A:0.20, C:0.23, G:0.17, T:0.40
Consensus pattern (41 bp):
TCAACATCTCACCTTTTGTTGATGTGATGGTTTCACCCTAG
Found at i:82452 original size:154 final size:152
Alignment explanation
Indices: 82063--82449 Score: 440
Period size: 154 Copynumber: 2.5 Consensus size: 152
82053 TTTCTTTTAG
* ** * * *
82063 ATTTTTCCTATTTTCAAAATACGAAGTTTT-TACTCCATAAATTTTTCAGGAGAATTTTTCTAAG
1 ATTTTTTCTATTACCAAAATACGAAGTTTTCTACTCCATAAATTTTTCAGAAGGATTTTTCTAAA
* * * *
82127 TTTATAATTTTCAAAATTCTTCAAATATTATTGCTTAATTCACATTCAATCAGGTTTTTAGAATT
66 TTTATAA-TTTCAAAATTCTTCAAATATCATTGCTTAATTCACATTAAATCAGGTTTTAAAAATT
82192 CAAGTTATTTTATGAGTTTTAAA
130 CAAGTTATTTTATGAGTTTTAAA
* * * * * * * *
82215 A-TTTTTCTAGCTACAAAAATATGAAGTTTTCTACTTCATAGATTTTTTCGGTAGGATTTTTCTC
1 ATTTTTTCTA-TTACCAAAATACGAAGTTTTCTACTCCATA-AATTTTTCAGAAGGATTTTTCTA
* * * * * *
82279 AAGTTATAATTTTTAAAATTCTTCAAATATCATTGTTTAATTTATATTAAATTA-GTTTTGAAAA
64 AATTTATAA-TTTCAAAATTCTTCAAATATCATTGCTTAATTCACATTAAATCAGGTTTT-AAAA
82343 ATTCAA-TTCATTTTATGAGTTTTAAA
127 ATTCAAGTT-ATTTTATGAGTTTTAAA
* * *
82369 ATTTTTTCTATTACCAAAATACGGAGTTTTCTACTCCGTAAATTTTCTCAGAAGGATTTTTTTAA
1 ATTTTTTCTATTACCAAAATACGAAGTTTTCTACTCCATAAATTTT-TCAGAAGGATTTTTCTAA
82434 ATTTATAATTTCAAAA
65 ATTTATAATTTCAAAA
82450 ATTTTTAAAT
Statistics
Matches: 192, Mismatches: 36, Indels: 13
0.80 0.15 0.05
Matches are distributed among these distances:
151 7 0.04
152 16 0.08
153 27 0.14
154 134 0.70
155 8 0.04
ACGTcount: A:0.33, C:0.11, G:0.09, T:0.47
Consensus pattern (152 bp):
ATTTTTTCTATTACCAAAATACGAAGTTTTCTACTCCATAAATTTTTCAGAAGGATTTTTCTAAA
TTTATAATTTCAAAATTCTTCAAATATCATTGCTTAATTCACATTAAATCAGGTTTTAAAAATTC
AAGTTATTTTATGAGTTTTAAA
Found at i:82494 original size:19 final size:17
Alignment explanation
Indices: 82472--82513 Score: 57
Period size: 19 Copynumber: 2.3 Consensus size: 17
82462 ATTTTAAAAA
82472 TTTAATTTATTTTATGATT
1 TTTAATTT-TTTTATG-TT
82491 TTTAAATTTTTTTATGTT
1 TTT-AATTTTTTTATGTT
82509 TTTAA
1 TTTAA
82514 GATACGGAGT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
17 2 0.09
18 5 0.23
19 10 0.45
20 5 0.23
ACGTcount: A:0.26, C:0.00, G:0.05, T:0.69
Consensus pattern (17 bp):
TTTAATTTTTTTATGTT
Found at i:83800 original size:13 final size:13
Alignment explanation
Indices: 83782--83806 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
83772 ATATTGCTTA
83782 GTATTGATACATT
1 GTATTGATACATT
83795 GTATTGATACAT
1 GTATTGATACAT
83807 GTTCTTTGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.08, G:0.16, T:0.44
Consensus pattern (13 bp):
GTATTGATACATT
Found at i:83963 original size:20 final size:20
Alignment explanation
Indices: 83935--83972 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
83925 CAACAGCTAT
* *
83935 AATTGTATCGATATATTATG
1 AATTATATCGATACATTATG
83955 AATTATATCGATACATTA
1 AATTATATCGATACATTA
83973 AGCCCAACAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.39, C:0.08, G:0.11, T:0.42
Consensus pattern (20 bp):
AATTATATCGATACATTATG
Found at i:85945 original size:20 final size:22
Alignment explanation
Indices: 85920--85960 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
85910 TGGATGTTTA
85920 TGAATG-TTTT-TAATTGGTAT
1 TGAATGATTTTCTAATTGGTAT
85940 TGAATGAATTTTCTAATTGGT
1 TGAATG-ATTTTCTAATTGGT
85961 TTATACGTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 6 0.33
22 4 0.22
23 8 0.44
ACGTcount: A:0.27, C:0.02, G:0.20, T:0.51
Consensus pattern (22 bp):
TGAATGATTTTCTAATTGGTAT
Found at i:88645 original size:19 final size:19
Alignment explanation
Indices: 88621--88668 Score: 66
Period size: 16 Copynumber: 2.7 Consensus size: 19
88611 TATCGATACA
88621 TTGTATTGATACATGTTCT
1 TTGTATTGATACATGTTCT
88640 TTGTATTG--A-ATGTTCT
1 TTGTATTGATACATGTTCT
*
88656 TTGTATCGATACA
1 TTGTATTGATACA
88669 ACACAAAATG
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
16 14 0.56
17 1 0.04
18 1 0.04
19 9 0.36
ACGTcount: A:0.23, C:0.10, G:0.17, T:0.50
Consensus pattern (19 bp):
TTGTATTGATACATGTTCT
Found at i:88888 original size:20 final size:20
Alignment explanation
Indices: 88845--88890 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
88835 TCAAATGCAT
* *
88845 TGTATCGATACATTATGAAT
1 TGTATCGATACATTAAGAAG
88865 TGTATCGATACA-TAAGAACG
1 TGTATCGATACATTAAGAA-G
88885 TGTATC
1 TGTATC
88891 CGCAAAAATG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 5 0.22
20 18 0.78
ACGTcount: A:0.35, C:0.13, G:0.17, T:0.35
Consensus pattern (20 bp):
TGTATCGATACATTAAGAAG
Found at i:90085 original size:157 final size:157
Alignment explanation
Indices: 89799--90374 Score: 752
Period size: 157 Copynumber: 3.7 Consensus size: 157
89789 ATCAAAGATT
* * * *
89799 TTGTTCCAAGGCCAAAAGTACTTGGCTGAATCTTCCTTGTAACTTTTAGATGTGTTTTGTATGTT
1 TTGTTCTAA-GCCAAAAGTACTTGGCCGAATCTTCCTTGTAACTTTTGGATGTGTTTTGTATGCT
* *
89864 GATTTTGATTTCTTGGATGTTTAATTTTGTGTTTTTATTAGGA-AAGGACAAACTTGCAAAATTA
65 GATTTTGATTTCTTGGATGTTTAATTTTGTGTTTTTATTAGCATAAGGACTAACTTGCAAAATTA
89928 GACAA-TTTAGGGGTTTTATTCGAAAATC
130 GA-AAGTTTAGGGGTTTTATTCGAAAATC
**** * *
89956 TTGTTCTGAAGCCAAAAGTACTTTTTTGAATCTTTCTTGTAACTTTTGGATGTGTTTTGTATGTT
1 TTGTTCT-AAGCCAAAAGTACTTGGCCGAATCTTCCTTGTAACTTTTGGATGTGTTTTGTATGCT
* *
90021 GATTTTGACTTCTTAGATGTTTAATTTTGTGTTTTTATTA-CATAAGGACTAACTTAG-AAAATT
65 GATTTTGATTTCTTGGATGTTTAATTTTGTGTTTTTATTAGCATAAGGACTAACTT-GCAAAATT
*
90084 AGAAAGTTTAGGTGTTTTATTCGAAAATC
129 AGAAAGTTTAGGGGTTTTATTCGAAAATC
* *
90113 TTGTTCTCAGGCCAACAA-TACTTGGCCAAATCTTCCTTGTAACTTTTGGATGTGTTTTGTATGC
1 TTGTTCT-AAGCCAA-AAGTACTTGGCCGAATCTTCCTTGTAACTTTTGGATGTGTTTTGTATGC
* *
90177 TGATTTTGATTTCTTGGATGTTTAATTTTGTTTTTTTATTAGC-TAAAGACTAACTTGCAAAATT
64 TGATTTTGATTTCTTGGATGTTTAATTTTGTGTTTTTATTAGCATAAGGACTAACTTGCAAAATT
* * *
90241 AGAAAGTTTAGGGGGTTTATTCAAAAATT
129 AGAAAGTTTAGGGGTTTTATTCGAAAATC
* * * * *
90270 TTATTCTAAGGTCAAAGGTGA-TTGGTCGAATCTTCCTTGTAACTTTTGGATATGTTTTGTATGC
1 TTGTTCTAA-GCCAAAAGT-ACTTGGCCGAATCTTCCTTGTAACTTTTGGATGTGTTTTGTATGC
* * * *
90334 TGATTTTGATTTCTTTGATGCTTAATTTTGTGGTTTAATTA
64 TGATTTTGATTTCTTGGATGTTTAATTTTGTGTTTTTATTA
90375 TGTAAGGTTT
Statistics
Matches: 369, Mismatches: 40, Indels: 20
0.86 0.09 0.05
Matches are distributed among these distances:
156 6 0.02
157 356 0.96
158 7 0.02
ACGTcount: A:0.26, C:0.10, G:0.19, T:0.45
Consensus pattern (157 bp):
TTGTTCTAAGCCAAAAGTACTTGGCCGAATCTTCCTTGTAACTTTTGGATGTGTTTTGTATGCTG
ATTTTGATTTCTTGGATGTTTAATTTTGTGTTTTTATTAGCATAAGGACTAACTTGCAAAATTAG
AAAGTTTAGGGGTTTTATTCGAAAATC
Found at i:91388 original size:156 final size:155
Alignment explanation
Indices: 91203--91881 Score: 617
Period size: 156 Copynumber: 4.4 Consensus size: 155
91193 GTTGTTACGA
* * *
91203 AGATGCTTTTATGCCGAAGATGTGCATTTAGGATAGGTTTATCCCATTTATGATCATTTTATTAT
1 AGATGCTTTTATGCCGAAGGTGTGCATTTAGGATAGGTTTATCCCATTTATGATCATTTTAGTGT
*
91268 CCATTAAAGTTACCGAGATACTTTCATGTCGAAGGTATACCCT-AGGGTTATTTTCAGTAATTTT
66 CCATTAAAGTTA-CGAGATACTTTCATGTCGAAAGTATACCCTAAGGG-TATTTTC-GTAATTTT
*
91332 CTTAAAATCTAA-TCCTAGGTTGTCACCG
128 TTTAAAA-CTAAGTCCTAGGTTGTCACCG
* * *
91360 GGATGC-TTTATGCTGAAGGTGTGTATTTAGGATAGGTTTATCCCATTTATGATCATTTTAGTGT
1 AGATGCTTTTATGCCGAAGGTGTGCATTTAGGATAGGTTTATCCCATTTATGATCATTTTAGTGT
* * * *
91424 CC-------TT-CG-GGTACTTTCACGTCGAAAGTATA-GCTAAAGGTATTTTCGTAATTTTTTT
66 CCATTAAAGTTACGAGATACTTTCATGTCGAAAGTATACCCTAAGGGTATTTTCGTAATTTTTTT
* * *
91479 AAAA-TCAAGTCTTAGGTTTTCA-CT
131 AAAACT-AAGTCCTAGGTTGTCACCG
** * * * *
91503 AGGATGCTTTTATGCAAAAAGTGTGCATTTAGGATAAGTTCATCCCATTTATGATCAGTTTAGTG
1 A-GATGCTTTTATGCCGAAGGTGTGCATTTAGGATAGGTTTATCCCATTTATGATCATTTTAGTG
* * * * *
91568 TCCATTAAGGTTACTAGAACACTTTTATGTCGAAGGTATACCCT-AGAGGTATTTTCGTAATTTT
65 TCCATTAAAGTTACGAG-ATACTTTCATGTCGAAAGTATACCCTAAG-GGTATTTTCGTAATTTT
* * * *
91632 TCTAGAAAC-GAGTCCTAAGTTGTCATCG
128 TTTA-AAACTAAGTCCTAGGTTGTCACCG
* * * * * * * * *
91660 AAATGCTTTTATGCCAAAGATATGCATTCAAGATAGGTTTATCCCATTTATGATCACTGTAGCGT
1 AGATGCTTTTATGCCGAAGGTGTGCATTTAGGATAGGTTTATCCCATTTATGATCATTTTAGTGT
* ** * * * **
91725 CCATTAGAGTTATTAGGAAACTTTCATATCGAAAGTATACCCTAAGGGCATTTTTATAATTTTTT
66 CCATTAAAGTTACGA-GATACTTTCATGTCGAAAGTATACCCTAAGGGTATTTTCGTAA-TTTTT
* * *
91790 TTATAACTAAGTTCTAGGTTGCCACC-
129 TTAAAACTAAGTCCTAGGTTGTCACCG
* * ** *
91816 AGA---TTTTATGCTGAAGGTGTGCATTTAGGATAGATTCGTCCCATTTATGATCATTTTAGTCT
1 AGATGCTTTTATGCCGAAGGTGTGCATTTAGGATAGGTTTATCCCATTTATGATCATTTTAGTGT
91878 CCAT
66 CCAT
91882 GAGATACTTT
Statistics
Matches: 418, Mismatches: 80, Indels: 52
0.76 0.15 0.09
Matches are distributed among these distances:
142 1 0.00
143 3 0.01
144 30 0.07
145 62 0.15
146 23 0.06
147 2 0.00
149 2 0.00
152 2 0.00
153 51 0.12
154 1 0.00
155 18 0.04
156 190 0.45
157 33 0.08
ACGTcount: A:0.28, C:0.15, G:0.18, T:0.39
Consensus pattern (155 bp):
AGATGCTTTTATGCCGAAGGTGTGCATTTAGGATAGGTTTATCCCATTTATGATCATTTTAGTGT
CCATTAAAGTTACGAGATACTTTCATGTCGAAAGTATACCCTAAGGGTATTTTCGTAATTTTTTT
AAAACTAAGTCCTAGGTTGTCACCG
Found at i:91673 original size:301 final size:301
Alignment explanation
Indices: 91120--91715 Score: 731
Period size: 301 Copynumber: 2.0 Consensus size: 301
91110 AATATTTTCA
** * *
91120 TGTCCTTCGGGTACTTTCACATCAAAGGTATACCTAGGGGCATTTTCATAATTTTTCTATAATCG
1 TGTCCTTCGGGTACTTTCACATCAAAGGTATACCTAAAGGCATTTTCATAATTTTTCTAAAATCA
* * ** * *
91185 AGTTTTGGGTTGTTACGAAGATGCTTTTATGCCGAAGATGTGCATTTAGGATAGGTTTATCCCAT
66 AGTCTTAGGTTGTTACGAAGATGCTTTTATGCAAAAGATGTGCATTTAGGATAAGTTCATCCCAT
* * * *
91250 TTATGATCATTTTATTATCCATTAAAGTTACCGAGATACTTTCATGTCGAAGGTATACCCTAGGG
131 TTATGATCAGTTTAGTATCCATTAAAGTTACAGAGACACTTTCATGTCGAAGGTATACCCTAGGG
* * ** ** *
91315 TTATTTTCAGTAATTTTCTTAAAATCTAATCCTAGGTTGTCACCGGGATGCTTTATGCTGAAGGT
196 TTATTTTCAGTAATTTTCTTAAAATCGAATCCTAAGTTGTCACCGAAATGCTTTATGCCAAAGAT
* * * *
91380 GTGTATTTAGGATAGGTTTATCCCATTTATGATCATTTTAG
261 ATGCATTCAAGATAGGTTTATCCCATTTATGATCATTTTAG
* * * * *
91421 TGTCCTTCGGGTACTTTCACGTCGAAA-GTATAGCTAAAGGTATTTTCGTAATTTTTTTAAAATC
1 TGTCCTTCGGGTACTTTCACATC-AAAGGTATACCTAAAGGCATTTTCATAATTTTTCTAAAATC
* *
91485 AAGTCTTAGGTT-TTCACTAGGATGCTTTTATGCAAAA-AGTGTGCATTTAGGATAAGTTCATCC
65 AAGTCTTAGGTTGTT-ACGAAGATGCTTTTATGCAAAAGA-TGTGCATTTAGGATAAGTTCATCC
* * *
91548 CATTTATGATCAGTTTAGTGTCCATTAAGGTTACTAGA-ACACTTTTATGTCGAAGGTATACCCT
128 CATTTATGATCAGTTTAGTATCCATTAAAGTTAC-AGAGACACTTTCATGTCGAAGGTATACCCT
* *
91612 AGAGG-TATTTTC-GTAATTTT-TCTAGAAA-CGAGTCCTAAGTTGTCATCGAAATGCTTTTATG
192 AG-GGTTATTTTCAGTAATTTTCT-TA-AAATCGAATCCTAAGTTGTCACCGAAATGC-TTTATG
91673 CCAAAGATATGCATTCAAGATAGGTTTATCCCATTTATGATCA
253 CCAAAGATATGCATTCAAGATAGGTTTATCCCATTTATGATCA
91716 CTGTAGCGTC
Statistics
Matches: 250, Mismatches: 37, Indels: 16
0.83 0.12 0.05
Matches are distributed among these distances:
299 1 0.00
300 33 0.13
301 209 0.84
302 7 0.03
ACGTcount: A:0.27, C:0.15, G:0.19, T:0.39
Consensus pattern (301 bp):
TGTCCTTCGGGTACTTTCACATCAAAGGTATACCTAAAGGCATTTTCATAATTTTTCTAAAATCA
AGTCTTAGGTTGTTACGAAGATGCTTTTATGCAAAAGATGTGCATTTAGGATAAGTTCATCCCAT
TTATGATCAGTTTAGTATCCATTAAAGTTACAGAGACACTTTCATGTCGAAGGTATACCCTAGGG
TTATTTTCAGTAATTTTCTTAAAATCGAATCCTAAGTTGTCACCGAAATGCTTTATGCCAAAGAT
ATGCATTCAAGATAGGTTTATCCCATTTATGATCATTTTAG
Found at i:98976 original size:2 final size:2
Alignment explanation
Indices: 98969--99010 Score: 75
Period size: 2 Copynumber: 21.0 Consensus size: 2
98959 TTTTGACTTT
*
98969 TA TA TA TA TG TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
99011 CACACTAATA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (2 bp):
TA
Found at i:101223 original size:13 final size:13
Alignment explanation
Indices: 101202--101232 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
101192 CGATACATGG
*
101202 TACAATGTATCGA
1 TACATTGTATCGA
101215 TACATTGTATCGA
1 TACATTGTATCGA
101228 TACAT
1 TACAT
101233 AATGAAATGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.35, C:0.16, G:0.13, T:0.35
Consensus pattern (13 bp):
TACATTGTATCGA
Found at i:101228 original size:33 final size:33
Alignment explanation
Indices: 101186--101252 Score: 100
Period size: 33 Copynumber: 2.0 Consensus size: 33
101176 CTATCACTAT
**
101186 TTGTATCGATACATGGT-ACAATGTATCGATACA
1 TTGTATCGATACATAATGA-AATGTATCGATACA
101219 TTGTATCGATACATAATGAAATGTATCGATACA
1 TTGTATCGATACATAATGAAATGTATCGATACA
101252 T
1 T
101253 AGCTTGTAAC
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
33 30 0.97
34 1 0.03
ACGTcount: A:0.36, C:0.13, G:0.16, T:0.34
Consensus pattern (33 bp):
TTGTATCGATACATAATGAAATGTATCGATACA
Found at i:107437 original size:13 final size:13
Alignment explanation
Indices: 107419--107444 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
107409 ACCATATTCC
107419 TTGTATCGATACA
1 TTGTATCGATACA
107432 TTGTATCGATACA
1 TTGTATCGATACA
107445 GTGGGTACTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:107611 original size:20 final size:22
Alignment explanation
Indices: 107567--107613 Score: 64
Period size: 22 Copynumber: 2.2 Consensus size: 22
107557 AATTTTCCAC
107567 AAAT-TTTCACTTTTTCACTTCA
1 AAATCTTTCACTTTTTCAC-TCA
107589 AAATCTTTCA-TTTTTCA-TCA
1 AAATCTTTCACTTTTTCACTCA
107609 AAATC
1 AAATC
107614 ATCAACAGAA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
20 8 0.33
22 11 0.46
23 5 0.21
ACGTcount: A:0.32, C:0.21, G:0.00, T:0.47
Consensus pattern (22 bp):
AAATCTTTCACTTTTTCACTCA
Found at i:109943 original size:19 final size:19
Alignment explanation
Indices: 109919--109974 Score: 85
Period size: 19 Copynumber: 2.9 Consensus size: 19
109909 TGTATCATAC
**
109919 ATTGTATCGATACATGTTA
1 ATTGTATCGATACATGACA
109938 ATTGTATCGATACATGGACA
1 ATTGTATCGATACAT-GACA
109958 ATTGTATCGATACATGA
1 ATTGTATCGATACATGA
109975 GATTGGCAGT
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
19 17 0.50
20 17 0.50
ACGTcount: A:0.34, C:0.12, G:0.18, T:0.36
Consensus pattern (19 bp):
ATTGTATCGATACATGACA
Found at i:109962 original size:20 final size:20
Alignment explanation
Indices: 109919--109973 Score: 85
Period size: 20 Copynumber: 2.8 Consensus size: 20
109909 TGTATCATAC
**
109919 ATTGTATCGATACAT-GTTA
1 ATTGTATCGATACATGGACA
109938 ATTGTATCGATACATGGACA
1 ATTGTATCGATACATGGACA
109958 ATTGTATCGATACATG
1 ATTGTATCGATACATG
109974 AGATTGGCAG
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
19 15 0.45
20 18 0.55
ACGTcount: A:0.33, C:0.13, G:0.18, T:0.36
Consensus pattern (20 bp):
ATTGTATCGATACATGGACA
Found at i:110028 original size:20 final size:20
Alignment explanation
Indices: 110003--110055 Score: 81
Period size: 20 Copynumber: 2.6 Consensus size: 20
109993 TATCACTATT
*
110003 TGTATCGATACATGGT-ACAA
1 TGTATCGATACATGATGA-AA
110023 TGTATCGATACATGATGAAA
1 TGTATCGATACATGATGAAA
110043 TGTATCGATACAT
1 TGTATCGATACAT
110056 AGCTTGTAAC
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
20 30 0.97
21 1 0.03
ACGTcount: A:0.36, C:0.13, G:0.19, T:0.32
Consensus pattern (20 bp):
TGTATCGATACATGATGAAA
Found at i:111617 original size:24 final size:23
Alignment explanation
Indices: 111557--111642 Score: 86
Period size: 24 Copynumber: 3.7 Consensus size: 23
111547 TAAAATAATA
*
111557 AAAAATAATTTATAT-TTAAAT-
1 AAAAATAATATATATATTAAATC
*
111578 AAAAATAACATAATATATTAATATC
1 AAAAATAATAT-ATATATTAA-ATC
* *
111603 AAAATTAATATATATACTTGAATC
1 AAAAATAATATATATA-TTAAATC
*
111627 AAAATTAATATATATA
1 AAAAATAATATATATA
111643 CATGAATTGA
Statistics
Matches: 55, Mismatches: 5, Indels: 7
0.82 0.07 0.10
Matches are distributed among these distances:
21 9 0.16
22 4 0.07
23 4 0.07
24 26 0.47
25 12 0.22
ACGTcount: A:0.57, C:0.05, G:0.01, T:0.37
Consensus pattern (23 bp):
AAAAATAATATATATATTAAATC
Found at i:111643 original size:24 final size:24
Alignment explanation
Indices: 111600--111649 Score: 91
Period size: 24 Copynumber: 2.1 Consensus size: 24
111590 ATATATTAAT
*
111600 ATCAAAATTAATATATATACTTGA
1 ATCAAAATTAATATATATACATGA
111624 ATCAAAATTAATATATATACATGA
1 ATCAAAATTAATATATATACATGA
111648 AT
1 AT
111650 TGAAAAAAAG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.52, C:0.08, G:0.04, T:0.36
Consensus pattern (24 bp):
ATCAAAATTAATATATATACATGA
Found at i:115225 original size:12 final size:13
Alignment explanation
Indices: 115196--115230 Score: 54
Period size: 12 Copynumber: 2.8 Consensus size: 13
115186 AATAATTTTT
115196 AAAATATTTTAAA
1 AAAATATTTTAAA
*
115209 TAAAT-TTTTAAA
1 AAAATATTTTAAA
115221 AAAATATTTT
1 AAAATATTTT
115231 TTAAAAGGTT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
12 11 0.58
13 8 0.42
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (13 bp):
AAAATATTTTAAA
Found at i:115395 original size:29 final size:30
Alignment explanation
Indices: 115315--115395 Score: 76
Period size: 29 Copynumber: 2.7 Consensus size: 30
115305 TTTTATATAA
115315 ATTAATTAAATTTTAAAAATTTAAAAATAATAT
1 ATTAATTAAATTTTAAAAA---AAAAATAATAT
* * **
115348 ATTAAAT-ATTTTTTTAAAAAAAATAATAT
1 ATTAATTAAATTTTAAAAAAAAAATAATAT
*
115377 -TTAATTAAGTTTTAAAAAA
1 ATTAATTAAATTTTAAAAAA
115396 TTTACATTAA
Statistics
Matches: 39, Mismatches: 8, Indels: 6
0.74 0.15 0.11
Matches are distributed among these distances:
28 5 0.13
29 20 0.51
32 8 0.21
33 6 0.15
ACGTcount: A:0.56, C:0.00, G:0.01, T:0.43
Consensus pattern (30 bp):
ATTAATTAAATTTTAAAAAAAAAATAATAT
Found at i:115544 original size:129 final size:124
Alignment explanation
Indices: 115366--115688 Score: 442
Period size: 129 Copynumber: 2.6 Consensus size: 124
115356 TTTTTTTAAA
115366 AAAAATAATATTTAATTAAGTTTTAAAAAATTTACATTAATAAATTAAAATATTAATTATTATGT
1 AAAAATAATATTTAATTAAG-TTTAAAAAATTTACATTAA-AAATTAAAATATTAATTATTAT-T
*
115431 TTTTAAAAAT-AAAAATTTTAAATTAAAAAAATAAAAAGGTTTTTTATTAT-TTTTTTAATAAAA
63 TTTTAAAAATAAAAAATTTTAAATT--AAAAA-AAAAA-GTTTTTTATTATAATTTTTAATAAAA
115494 T
124 T
*
115495 ACAAAATAATATTTAATTAAGTTTAAATAATTTACATTAACAAATTAAAATATTAATTATTATAT
1 A-AAAATAATATTTAATTAAGTTTAAAAAATTTACATTAA-AAATTAAAATATTAATTATTAT-T
** *
115560 TTTTTTAAATAAAAAATTTTAAATTAAAAAAAAGAGTTTTTTATTATAATTTTTAATAAAAT
63 TTTTAAAAATAAAAAATTTTAAATTAAAAAAAAAAGTTTTTTATTATAATTTTTAATAAAAT
* * *
115622 AAAAA-AATATTTAATTAAGTTTAAAAAAATTACATTAATAATT-AAATATTTA-TATT-TTTTT
1 AAAAATAATATTTAATTAAGTTTAAAAAATTTACATTAAAAATTAAAATATTAATTATTATTTTT
115683 TAAAAA
66 TAAAAA
115689 ATTTTAAATT
Statistics
Matches: 178, Mismatches: 13, Indels: 15
0.86 0.06 0.07
Matches are distributed among these distances:
120 8 0.04
121 1 0.01
122 4 0.02
123 8 0.04
124 4 0.02
125 31 0.17
126 16 0.09
127 18 0.10
128 5 0.03
129 50 0.28
130 33 0.19
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.44
Consensus pattern (124 bp):
AAAAATAATATTTAATTAAGTTTAAAAAATTTACATTAAAAATTAAAATATTAATTATTATTTTT
TAAAAATAAAAAATTTTAAATTAAAAAAAAAAGTTTTTTATTATAATTTTTAATAAAAT
Found at i:115581 original size:14 final size:15
Alignment explanation
Indices: 115562--115590 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
115552 TATTATATTT
115562 TTTTAAA-TAAAAAA
1 TTTTAAATTAAAAAA
115576 TTTTAAATTAAAAAA
1 TTTTAAATTAAAAAA
115591 AAGAGTTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (15 bp):
TTTTAAATTAAAAAA
Found at i:116670 original size:13 final size:13
Alignment explanation
Indices: 116652--116676 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
116642 ATTAAAAAAA
116652 TTAAAAAATTTAT
1 TTAAAAAATTTAT
116665 TTAAAAAATTTA
1 TTAAAAAATTTA
116677 AAAAATTATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (13 bp):
TTAAAAAATTTAT
Found at i:117013 original size:16 final size:16
Alignment explanation
Indices: 116994--117033 Score: 50
Period size: 14 Copynumber: 2.7 Consensus size: 16
116984 TATGTTACAA
*
116994 ATTAGTATTATTAATT
1 ATTATTATTATTAATT
117010 ATTATTA-TA-TAATT
1 ATTATTATTATTAATT
117024 -TTATTATTAT
1 ATTATTATTAT
117034 GCTGATTACA
Statistics
Matches: 21, Mismatches: 1, Indels: 5
0.78 0.04 0.19
Matches are distributed among these distances:
13 6 0.29
14 7 0.33
15 2 0.10
16 6 0.29
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.60
Consensus pattern (16 bp):
ATTATTATTATTAATT
Found at i:117015 original size:13 final size:13
Alignment explanation
Indices: 116966--117032 Score: 57
Period size: 13 Copynumber: 5.2 Consensus size: 13
116956 ATTAAAATTT
* *
116966 TTAAATATTTTTA
1 TTAATTATTATTA
*
116979 TTAATTA-TGTTA
1 TTAATTATTATTA
** *
116991 CAAATTAGTATTA
1 TTAATTATTATTA
117004 TTAATTATTATTA
1 TTAATTATTATTA
117017 TATAATT-TTATTA
1 T-TAATTATTATTA
117030 TTA
1 TTA
117033 TGCTGATTAC
Statistics
Matches: 44, Mismatches: 8, Indels: 5
0.77 0.14 0.09
Matches are distributed among these distances:
12 11 0.25
13 28 0.64
14 5 0.11
ACGTcount: A:0.39, C:0.01, G:0.03, T:0.57
Consensus pattern (13 bp):
TTAATTATTATTA
Done.