Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold287
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 796744
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.34
File 5 of 5
Found at i:660522 original size:20 final size:21
Alignment explanation
Indices: 660443--660521 Score: 72
Period size: 20 Copynumber: 3.7 Consensus size: 21
660433 AATGTCCAAA
*
660443 ATGTATCGATACATGTTTT-T
1 ATGTATCGATACATCTTTTCT
* *
660463 GTGTATCGATACATCTGGAAATTCT
1 ATGTATCGATACATCT----TTTCT
660488 ATGTATCGATACAT-TTTTCT
1 ATGTATCGATACATCTTTTCT
*
660508 TTGTATCGATACAT
1 ATGTATCGATACAT
660522 TGTATCGATA
Statistics
Matches: 48, Mismatches: 6, Indels: 10
0.75 0.09 0.16
Matches are distributed among these distances:
20 31 0.65
24 3 0.06
25 14 0.29
ACGTcount: A:0.27, C:0.14, G:0.15, T:0.44
Consensus pattern (21 bp):
ATGTATCGATACATCTTTTCT
Found at i:660526 original size:13 final size:13
Alignment explanation
Indices: 660508--660546 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
660498 ACATTTTTCT
660508 TTGTATCGATACA
1 TTGTATCGATACA
660521 TTGTATCGATACA
1 TTGTATCGATACA
*
660534 CTGTATCGATACA
1 TTGTATCGATACA
660547 GGGTGATTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:663009 original size:20 final size:20
Alignment explanation
Indices: 662986--663058 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
662976 ACAATTCAAA
662986 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
****
663006 GTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCA-AT
663027 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
663047 GTATCGATACAT
1 GTATCGATACAT
663059 AAAAAAGTTG
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.32
Consensus pattern (20 bp):
GTATCGATACATGTTGCAAT
Found at i:663030 original size:21 final size:21
Alignment explanation
Indices: 663004--663079 Score: 91
Period size: 21 Copynumber: 3.7 Consensus size: 21
662994 ACATGTTGCA
663004 ATGTATCGATACATGAAAAAG
1 ATGTATCGATACATGAAAAAG
****
663025 ATGTATCGATACATGTTGCA-
1 ATGTATCGATACATGAAAAAG
*
663045 ATGTATCGATACATAAAAAAG
1 ATGTATCGATACATGAAAAAG
*
663066 TTGTATCGATACAT
1 ATGTATCGATACAT
663080 TTCTTGGCAG
Statistics
Matches: 44, Mismatches: 10, Indels: 2
0.79 0.18 0.04
Matches are distributed among these distances:
20 15 0.34
21 29 0.66
ACGTcount: A:0.41, C:0.12, G:0.17, T:0.30
Consensus pattern (21 bp):
ATGTATCGATACATGAAAAAG
Found at i:663037 original size:41 final size:41
Alignment explanation
Indices: 662986--663079 Score: 170
Period size: 41 Copynumber: 2.3 Consensus size: 41
662976 ACAATTCAAA
*
662986 GTATCGATACATGTTGCAATGTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
*
663027 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGTT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
663068 GTATCGATACAT
1 GTATCGATACAT
663080 TTCTTGGCAG
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 51 1.00
ACGTcount: A:0.38, C:0.13, G:0.18, T:0.31
Consensus pattern (41 bp):
GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
Found at i:663136 original size:13 final size:13
Alignment explanation
Indices: 663118--663143 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
663108 TACATTAAGT
663118 ATGTATCGATACA
1 ATGTATCGATACA
663131 ATGTATCGATACA
1 ATGTATCGATACA
663144 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:670218 original size:29 final size:29
Alignment explanation
Indices: 670156--670219 Score: 69
Period size: 29 Copynumber: 2.2 Consensus size: 29
670146 AAATTTTGCA
**
670156 AAAAATTACAAAATAGTACCTAAAATTTT
1 AAAAATTACAAAATAGTACCTAAAAAGTT
*
670185 TAAAATTACAAAA-AG-ACCTCAAAAAAGTT
1 AAAAATTACAAAATAGTACCT--AAAAAGTT
670214 AAAAAT
1 AAAAAT
670220 GTATAAATCA
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
27 4 0.14
28 2 0.07
29 23 0.79
ACGTcount: A:0.59, C:0.11, G:0.05, T:0.25
Consensus pattern (29 bp):
AAAAATTACAAAATAGTACCTAAAAAGTT
Found at i:673192 original size:13 final size:13
Alignment explanation
Indices: 673174--673199 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
673164 CAATTTTTTG
673174 TGTATCGATACAT
1 TGTATCGATACAT
673187 TGTATCGATACAT
1 TGTATCGATACAT
673200 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:673795 original size:120 final size:118
Alignment explanation
Indices: 673644--674070 Score: 338
Period size: 120 Copynumber: 3.6 Consensus size: 118
673634 GGGTAAGTCG
** * *
673644 ACAAGTCAACAGCTGAG-AAGGATCTG-TTGAGATGAAATCAATAATTCAACAGAT-AAAAAGGG
1 ACAAGTCAACAAATGAGAAAGG-T-TGATTGAGATGAAATCAA-AAGTCAACAGATGAGAAA-GG
* * * * *
673706 TTGACCAGGATGAAACTGATAAGTTGACAAATTAGAAAGGTTGATTGGGACAAAACCA
62 TTGACC-GGATGAAACTGACAAGTTAACAAATAAGAAGGGTTGATAGGGACAAAACCA
* * * * * *
673764 ACAAGTTAACAAATGAGAAAGGTTGACTGAGAAGAAATTGAAAAGTCAACAGGTGAGAAAGGTTA
1 ACAAGTCAACAAATGAGAAAGGTTGATTGAGATGAAA-TCAAAAGTCAACAGATGAGAAAGGTTG
* * * ** * * *
673829 ACCGAGATAAAACTAACAAGTTAATAGGTGATAAGGGTTGATAGGGACAAAACCG
65 ACCG-GATGAAACTGACAAGTTAACAAATAAGAAGGGTTGATAGGGACAAAACCA
* * * * *
673884 ATAAGTCAAAAAATGAGAAAGGTTGATTGAGATAAAACCAACAAGTCAAGAGATGAGAAAGGTTG
1 ACAAGTCAACAAATGAGAAAGGTTGATTGAGATGAAATCAA-AAGTCAACAGATGAGAAAGGTTG
** * * * * * * *
673949 ATTGGGACGAAATTGACAAGTCAACAAATAAGAAGGGTTGATCGAGACGAAACTA
65 A-CCGGATGAAACTGACAAGTTAACAAATAAGAAGGGTTGATAGGGACAAAACCA
* * * * * * * *
674004 ACAAGTCAACAACTGAGAAGGGTTGATTGAGATAAAACTGACAAGTTAACAAATGAGAAGGGTTG
1 ACAAGTCAACAAATGAGAAAGGTTGATTGAGATGAAA-TCAAAAGTCAACAGATGAGAAAGGTTG
674069 AC
65 AC
674071 TAAAATAAAA
Statistics
Matches: 237, Mismatches: 62, Indels: 17
0.75 0.20 0.05
Matches are distributed among these distances:
119 5 0.02
120 219 0.92
121 13 0.05
ACGTcount: A:0.45, C:0.11, G:0.25, T:0.19
Consensus pattern (118 bp):
ACAAGTCAACAAATGAGAAAGGTTGATTGAGATGAAATCAAAAGTCAACAGATGAGAAAGGTTGA
CCGGATGAAACTGACAAGTTAACAAATAAGAAGGGTTGATAGGGACAAAACCA
Found at i:673841 original size:80 final size:80
Alignment explanation
Indices: 673732--674069 Score: 284
Period size: 80 Copynumber: 4.2 Consensus size: 80
673722 TGATAAGTTG
* * * * * *
673732 ACAAATTAGAAAGGTTGATTGGGACAAAACCAACAAGTTAACAAATGAGAAAGGTTGACTGAGAA
1 ACAAATGAGAAAGGTTGATCGAGATAAAACCAACAAGTCAACAAATGAGAAAGGTTGATTGAGAA
673797 GAAATTGAAAAGTCA
66 GAAATTGAAAAGTCA
** * * * * * ** * * * *
673812 ACAGGTGAGAAAGGTTAACCGAGATAAAACTAACAAGTTAATAGGTGATAAGGGTTGATAGGGAC
1 ACAAATGAGAAAGGTTGATCGAGATAAAACCAACAAGTCAACAAATGAGAAAGGTTGATTGAGA-
** *
673877 A-AAACCGATAAGTCA
65 AGAAATTGAAAAGTCA
* * * * * *
673892 AAAAATGAGAAAGGTTGATTGAGATAAAACCAACAAGTCAAGAGATGAGAAAGGTTGATTGGGAC
1 ACAAATGAGAAAGGTTGATCGAGATAAAACCAACAAGTCAACAAATGAGAAAGGTTGATTGAGAA
*
673957 GAAATTGACAAGTCA
66 GAAATTGAAAAGTCA
* * ** * * *
673972 ACAAATAAGAAGGGTTGATCGAGACGAAACTAACAAGTCAACAACTGAGAAGGGTTGATTGAGAT
1 ACAAATGAGAAAGGTTGATCGAGATAAAACCAACAAGTCAACAAATGAGAAAGGTTGATTGAGA-
* * *
674037 A-AAACTGACAAGTTA
65 AGAAATTGAAAAGTCA
*
674052 ACAAATGAGAAGGGTTGA
1 ACAAATGAGAAAGGTTGA
674070 CTAAAATAAA
Statistics
Matches: 202, Mismatches: 53, Indels: 6
0.77 0.20 0.02
Matches are distributed among these distances:
80 201 1.00
81 1 0.00
ACGTcount: A:0.46, C:0.10, G:0.25, T:0.19
Consensus pattern (80 bp):
ACAAATGAGAAAGGTTGATCGAGATAAAACCAACAAGTCAACAAATGAGAAAGGTTGATTGAGAA
GAAATTGAAAAGTCA
Found at i:673908 original size:40 final size:40
Alignment explanation
Indices: 673718--674069 Score: 256
Period size: 40 Copynumber: 8.8 Consensus size: 40
673708 GACCAGGATG
* ** * * *
673718 AAACTGATAAGTTGACAAATTAGAAAGGTTGATTGGGACA
1 AAACTGACAAGTCAACAAATGAGAAGGGTTGATTGAGACA
** * * *
673758 AAACCAACAAGTTAACAAATGAGAAAGGTTGACTGAGA-A
1 AAACTGACAAGTCAACAAATGAGAAGGGTTGATTGAGACA
* * ** * * ** *
673797 GAAATTGAAAAGTCAACAGGTGAGAAAGGTTAACCGAGATA
1 -AAACTGACAAGTCAACAAATGAGAAGGGTTGATTGAGACA
* * * ** * * *
673838 AAACTAACAAGTTAATAGGTGATAAGGGTTGATAGGGACA
1 AAACTGACAAGTCAACAAATGAGAAGGGTTGATTGAGACA
* * * * *
673878 AAACCGATAAGTCAAAAAATGAGAAAGGTTGATTGAGATA
1 AAACTGACAAGTCAACAAATGAGAAGGGTTGATTGAGACA
** * * * * *
673918 AAACCAACAAGTCAAGAGATGAGAAAGGTTGATTGGGACG
1 AAACTGACAAGTCAACAAATGAGAAGGGTTGATTGAGACA
* * * *
673958 AAATTGACAAGTCAACAAATAAGAAGGGTTGATCGAGACG
1 AAACTGACAAGTCAACAAATGAGAAGGGTTGATTGAGACA
* * *
673998 AAACTAACAAGTCAACAACTGAGAAGGGTTGATTGAGATA
1 AAACTGACAAGTCAACAAATGAGAAGGGTTGATTGAGACA
*
674038 AAACTGACAAGTTAACAAATGAGAAGGGTTGA
1 AAACTGACAAGTCAACAAATGAGAAGGGTTGA
674070 CTAAAATAAA
Statistics
Matches: 244, Mismatches: 66, Indels: 4
0.78 0.21 0.01
Matches are distributed among these distances:
39 1 0.00
40 242 0.99
41 1 0.00
ACGTcount: A:0.46, C:0.10, G:0.25, T:0.19
Consensus pattern (40 bp):
AAACTGACAAGTCAACAAATGAGAAGGGTTGATTGAGACA
Found at i:674103 original size:120 final size:120
Alignment explanation
Indices: 673739--674131 Score: 290
Period size: 120 Copynumber: 3.3 Consensus size: 120
673729 TTGACAAATT
* * * * * * *
673739 AGAAAGGTTGATTGGGACAAAACCAACAAGTTAACAAATGAGAAAGGTTGACTGAGA-AGAAATT
1 AGAAGGGTTGATCGAGACAAAACCAACAAGTCAAAAAATGAGAAAGGTTGATTGAGATA-AAA-C
* ** * ** * * * *
673803 GAA-AAGTCAACAGGTGAGAAAGGTTAACCGAGATAAAA-CTAACAAGTTAATAGGTG
64 CAACAAGTCAACAAATGAGAAAGGTTGACTAAAACAAAATC-GACAAGTCAATAGGTG
* * * * *
673859 ATAAGGGTTGATAGGGACAAAACCGATAAGTCAAAAAATGAGAAAGGTTGATTGAGATAAAACCA
1 AGAAGGGTTGATCGAGACAAAACCAACAAGTCAAAAAATGAGAAAGGTTGATTGAGATAAAACCA
* * * *** * * * ** *
673924 ACAAGTCAAGAGATGAGAAAGGTTGATTGGGACGAAATTGACAAGTCAACAAATA
66 ACAAGTCAACAAATGAGAAAGGTTGACTAAAACAAAATCGACAAGTCAATAGGTG
* * * * * **
673979 AGAAGGGTTGATCGAGACGAAACTAACAAGTCAACAACTGAGAAGGGTTGATTGAGATAAAACTG
1 AGAAGGGTTGATCGAGACAAAACCAACAAGTCAAAAAATGAGAAAGGTTGATTGAGATAAAACCA
* * * *
674044 ACAAGTTAACAAATGAGAAGGGTTGACTAAAATAAAATCGATAAGTCAATAGGTG
66 ACAAGTCAACAAATGAGAAAGGTTGACTAAAACAAAATCGACAAGTCAATAGGTG
* * * *
674099 AGAAGAGTTGATCG-TATAAAGCCAACAAGTCAA
1 AGAAGGGTTGATCGAGACAAAACCAACAAGTCAA
674132 CAAGTTTAAG
Statistics
Matches: 211, Mismatches: 59, Indels: 7
0.76 0.21 0.03
Matches are distributed among these distances:
119 16 0.08
120 194 0.92
121 1 0.00
ACGTcount: A:0.46, C:0.11, G:0.25, T:0.19
Consensus pattern (120 bp):
AGAAGGGTTGATCGAGACAAAACCAACAAGTCAAAAAATGAGAAAGGTTGATTGAGATAAAACCA
ACAAGTCAACAAATGAGAAAGGTTGACTAAAACAAAATCGACAAGTCAATAGGTG
Found at i:674297 original size:65 final size:63
Alignment explanation
Indices: 674214--674820 Score: 235
Period size: 65 Copynumber: 9.5 Consensus size: 63
674204 ACTAAAATTA
* * * ** *
674214 ACTAGGACAAAACCTAAGTCGAAAAAGGTTGACCAGAATAAAACCAATATAGTCAATTACAAGTG
1 ACTAAGACGAAACTTAAGTCGAAAAAGGTTGACCAGGGTAAAACCAA-ATAGTCAACTA-AAGTG
* * *
674279 ACTAAGACGAAACTTAAGTCGAAAAGGGTTGAGCAGGGTGAAACCAAATAGTCAACTAAAAGTG
1 ACTAAGACGAAACTTAAGTCGAAAAAGGTTGACCAGGGTAAAACCAAATAGTCAACT-AAAGTG
* * * * * *
674343 ACTAGGATGAAACTTAAGTCGAAAAAGATTAACTAGGGCAAAACCAACATAGTCAACTAAA--G
1 ACTAAGACGAAACTTAAGTCGAAAAAGGTTGACCAGGGTAAAACCAA-ATAGTCAACTAAAGTG
** * ** *
674405 A-T-----G--AC-TAAGTCATAAAAGGTTGACTAGGGTAAAATTGATATAGTCAACTAAAGGTG
1 ACTAAGACGAAACTTAAGTCGAAAAAGGTTGACCAGGGTAAAA-CCAAATAGTCAACTAAA-GTG
* * * * * * * **
674461 AC-AAGGATGACACCTAAGTCAAAAAAGGTTAACCGGGGCAAAATTAATATAGTCAACTAAAGGT
1 ACTAA-GACGAAACTTAAGTCGAAAAAGGTTGACCAGGGTAAAACCAA-ATAGTCAACTAAA-GT
674525 G
63 G
* * ** * * * *
674526 ACTAAGATGAAACCTAAGTC-AAAAAAATATGACTAGGGCAAAACTGATATAGTCAACTAAAGGT
1 ACTAAGACGAAACTTAAGTCGAAAAAGGT-TGACCAGGGTAAAAC-CAAATAGTCAACTAAA-GT
674590 G
63 G
* * * * * * * *
674591 AATAAGA-TAGAACCTAAGTCAAAAAAGGTTGACCAGACCAGAGCGAAATCGATATAGTCAACTA
1 ACTAAGACGA-AACTTAAGTCGAAAAAGGTTGACCAG----G-G-TAAAACCAAATAGTCAACTA
674655 AAGGTG
59 AA-GTG
* * * * ** * * * * *
674661 ACTAAGACAAAACCTAA-T-AAACAAAAGTTGATTAAGAT-GAACCATATAGTAAACTAAAGGTG
1 ACTAAGACGAAACTTAAGTCGAA-AAAGGTTGACCAGGGTAAAACCAAATAGTCAACTAAA-GTG
* * * * * * *
674723 ACT-AG-CGCAAAACCTAAGTCGAAAAGGGTTGACCAAGGTGAAACTGATATAGTTAACTAAAGG
1 ACTAAGACG--AAACTTAAGTCGAAAAAGGTTGACCAGGGTAAAAC-CAAATAGTCAACTAAA-G
674786 TG
62 TG
* * * *
674788 ACTAGGATGAAACCTAAGTCGAAAACGGTTGAC
1 ACTAAGACGAAACTTAAGTCGAAAAAGGTTGAC
674821 TAAGGCAAAA
Statistics
Matches: 430, Mismatches: 74, Indels: 76
0.74 0.13 0.13
Matches are distributed among these distances:
53 37 0.09
54 3 0.01
56 3 0.01
60 1 0.00
61 3 0.01
62 34 0.08
63 12 0.03
64 71 0.17
65 202 0.47
66 10 0.02
67 1 0.00
68 3 0.01
69 11 0.03
70 34 0.08
71 5 0.01
ACGTcount: A:0.45, C:0.15, G:0.21, T:0.19
Consensus pattern (63 bp):
ACTAAGACGAAACTTAAGTCGAAAAAGGTTGACCAGGGTAAAACCAAATAGTCAACTAAAGTG
Found at i:674431 original size:53 final size:53
Alignment explanation
Indices: 674357--674462 Score: 124
Period size: 53 Copynumber: 2.0 Consensus size: 53
674347 GGATGAAACT
674357 TAAGTCGAAAAAGATTAACTAGGGCAAAACCAACATAGTCAACTAAAGATGAC
1 TAAGTCGAAAAAGATTAACTAGGGCAAAACCAACATAGTCAACTAAAGATGAC
* * * *** * *
674410 TAAGTC-ATAAAAGGTTGACTAGGGTAAAATTGATATAGTCAACTAAAGGTGAC
1 TAAGTCGA-AAAAGATTAACTAGGGCAAAACCAACATAGTCAACTAAAGATGAC
674463 AAGGATGACA
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
52 1 0.02
53 43 0.98
ACGTcount: A:0.45, C:0.13, G:0.20, T:0.22
Consensus pattern (53 bp):
TAAGTCGAAAAAGATTAACTAGGGCAAAACCAACATAGTCAACTAAAGATGAC
Found at i:674837 original size:65 final size:64
Alignment explanation
Indices: 674409--675525 Score: 446
Period size: 65 Copynumber: 17.3 Consensus size: 64
674399 CTAAAGATGA
* * * *
674409 CTAAGTC-ATAAAAGGTTGACTAGGGTAAAATTGATATAGTCAACTAAAGGTGACAAGGATGACA
1 CTAAGTCGA-AAAAGGTTGACTAAGGTAAAA-CGATATAGTCAACTAAAGGTGACTAGGATGAAA
674473 C
64 C
* * *** * ** *
674474 CTAAGTCAAAAAAGGTTAACCGGGGCAAAATTAATATAGTCAACTAAAGGTGACTAAGATGAAAC
1 CTAAGTCGAAAAAGGTTGACTAAGGTAAAA-CGATATAGTCAACTAAAGGTGACTAGGATGAAAC
** * * * *
674539 CTAAGTC-AAAAAAATATGACTAGGGCAAAACTGATATAGTCAACTAAAGGTGAATAAGAT-AGA
1 CTAAGTCGAAAAAGGT-TGACTAAGGTAAAAC-GATATAGTCAACTAAAGGTGACTAGGATGA-A
674602 AC
63 AC
* * * * * *
674604 CTAAGTCAAAAAAGGTTGACCAGACCAGAGCGAAATCGATATAGTCAACTAAAGGTGACTAAGAC
1 CTAAGTCGAAAAAGGTTGA-C-TA--AG-G-TAAAACGATATAGTCAACTAAAGGTGACTAGGAT
*
674669 AAAAC
60 GAAAC
* * * * * * *
674674 CTAA-T-AAACAAAAGTTGATTAAGAT-GAACCATATAGTAAACTAAAGGTGACTAGCGCA--AA
1 CTAAGTCGAA-AAAGGTTGACTAAGGTAAAACGATATAGTCAACTAAAGGTGACTAG-G-ATGAA
674734 AC
63 AC
* * * *
674736 CTAAGTCGAAAAGGGTTGACCAAGGTGAAACTGATATAGTTAACTAAAGGTGACTAGGATGAAAC
1 CTAAGTCGAAAAAGGTTGACTAAGGTAAAAC-GATATAGTCAACTAAAGGTGACTAGGATGAAAC
* * * *
674801 CTAAGTCGAAAACGGTTGACTAAGGCAAAATCGATATAAT-GACT--A--TGAC----A--AAAC
1 CTAAGTCGAAAAAGGTTGACTAAGGTAAAA-CGATATAGTCAACTAAAGGTGACTAGGATGAAAC
* ** * * * * * * *
674855 CTAAGTC-AAATAAAGTTGACCGAGATAAAACCATATGGATTAACTAAGGGTGACCAAGG-CGAA
1 CTAAGTCGAAA-AAGGTTGACTAAGGTAAAACGATATAG-TCAACTAAAGGTGA-CTAGGATGAA
*
674918 AT
63 AC
* * * ** * ** * * * *
674920 TTAAATTGAAACGGGTTGACTAAGGTGAAACCTTTATAGTTAACTAAAGGTGGCTAAGATGAAAT
1 CTAAGTCGAAAAAGGTTGACTAAGGT-AAAACGATATAGTCAACTAAAGGTGACTAGGATGAAAC
* **** * *
674985 CTAAGTCGAAAAGGGTTGACT-AGAGTGACGTTGATATATTTAACTAAAGGTGACTAGGATGAAA
1 CTAAGTCGAAAAAGGTTGACTAAG-GT-AAAACGATATAGTCAACTAAAGGTGACTAGGATGAAA
675049 C
64 C
* * * * * * * * * *
675050 CTAAGTTGAATAGGGTTGACCAAGGTGAAACCAATATAATTAACTAAAAGTAACTAGGATGAAAC
1 CTAAGTCGAAAAAGGTTGACTAAGGT-AAAACGATATAGTCAACTAAAGGTGACTAGGATGAAAC
* * * * * **
675115 CTAAGTTG-AAAAGGATTGA-TAAGTGCAAAACTAATATAGTCAACTACAGGTGA-TAAGACAAA
1 CTAAGTCGAAAAAGG-TTGACTAAG-GTAAAAC-GATATAGTCAACTAAAGGTGACTAGGATGAA
675177 AC
63 AC
* ** * * * * * *
675179 TTAAGTAAAAAAAGGTTGACCAAAGTGAAACCGATATAGTCAACTAAGGGTGACTAGAATGAAAT
1 CTAAGTCGAAAAAGGTTGACTAAGGT-AAAACGATATAGTCAACTAAAGGTGACTAGGATGAAAC
* * * * * * ** * * **
675244 TTAAGTC-AAAAAGGAGTTG-GT-CGGAATGAAACCATACGAACCAACTAAGGGTGACCAGGGCG
1 CTAAGTCGAAAAA-G-GTTGACTAAGG--TAAAACGATA-TAGTCAACTAAAGGTGACTAGGATG
675306 AAAC
61 AAAC
* * *
675310 CTAAGTC-AAAAAGAATTGACCAGGGTAAAACTGATATAGTCAACTAAAGGTGACTAGGAT-AAA
1 CTAAGTCGAAAAAG-GTTGACTAAGGTAAAAC-GATATAGTCAACTAAAGGTGACTAGGATGAAA
675373 GC
64 -C
* * ** * * * * **
675375 CTAAGTCG-AGAAGAGTTAACTGGGGCAAAATTGATATAGTCTACTAAAGGTAACTA-GAACAGA
1 CTAAGTCGAAAAAG-GTTGACTAAGGTAAAA-CGATATAGTCAACTAAAGGTGACTAGGATGA-A
675438 AC
63 AC
* * * * * * * * *
675440 CTAAGTTGAAAAA-GTTAACCAAGATAAAACCAATATAGTCAACTAAAGGTAAGTAAGATAAAAC
1 CTAAGTCGAAAAAGGTTGACTAAGGTAAAA-CGATATAGTCAACTAAAGGTGACTAGGATGAAAC
* *
675504 CTAAATTGAAAAAGGTTGACTA
1 CTAAGTCGAAAAAGGTTGACTA
675526 GGGCGAAACC
Statistics
Matches: 799, Mismatches: 189, Indels: 128
0.72 0.17 0.11
Matches are distributed among these distances:
53 8 0.01
54 25 0.03
55 3 0.00
56 1 0.00
59 3 0.00
60 5 0.01
62 33 0.04
63 14 0.02
64 127 0.16
65 457 0.57
66 67 0.08
67 4 0.01
68 3 0.00
69 10 0.01
70 34 0.04
71 5 0.01
ACGTcount: A:0.44, C:0.13, G:0.21, T:0.21
Consensus pattern (64 bp):
CTAAGTCGAAAAAGGTTGACTAAGGTAAAACGATATAGTCAACTAAAGGTGACTAGGATGAAAC
Found at i:676263 original size:59 final size:59
Alignment explanation
Indices: 676190--676391 Score: 192
Period size: 59 Copynumber: 3.4 Consensus size: 59
676180 GTTTAGATCG
* * *
676190 AACCAGATATCTAAA-AATGACTTGGGCGAAACCAAGACTCAATTAAATGGCTTGGACTA
1 AACCAGAAACCTAAACAATGACTTAGGC-AAACCAAGACTCAATTAAATGGCTTGGACTA
* * * ** * * *
676249 AACCAGAAACCTAAACAACGATTTAAGCAAAATAGGACTCAACTAAATGGCTTGGACGA
1 AACCAGAAACCTAAACAATGACTTAGGCAAACCAAGACTCAATTAAATGGCTTGGACTA
* * * * *
676308 AACCAAAAACCTAAACAATGACTTAGGCAAAACCAAAATTCAATGAAATGGCCTGGA-TAA
1 AACCAGAAACCTAAACAATGACTTAGGC-AAACCAAGACTCAATTAAATGGCTTGGACT-A
** *
676368 AAATAGCAACCTAAACAATGACTT
1 AACCAGAAACCTAAACAATGACTT
676392 TATATGAGCA
Statistics
Matches: 112, Mismatches: 28, Indels: 5
0.77 0.19 0.03
Matches are distributed among these distances:
59 63 0.56
60 49 0.44
ACGTcount: A:0.46, C:0.20, G:0.15, T:0.19
Consensus pattern (59 bp):
AACCAGAAACCTAAACAATGACTTAGGCAAACCAAGACTCAATTAAATGGCTTGGACTA
Found at i:676850 original size:20 final size:20
Alignment explanation
Indices: 676825--676899 Score: 132
Period size: 20 Copynumber: 3.8 Consensus size: 20
676815 TTTTACCCAG
676825 ATGTATCGATACATGATTCA
1 ATGTATCGATACATGATTCA
*
676845 ATGTATCGATACATAATTCA
1 ATGTATCGATACATGATTCA
*
676865 ATGTATCGATACATCATTCA
1 ATGTATCGATACATGATTCA
676885 ATGTATCGATACATG
1 ATGTATCGATACATG
676900 CAGGCAAATT
Statistics
Matches: 52, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 52 1.00
ACGTcount: A:0.36, C:0.16, G:0.13, T:0.35
Consensus pattern (20 bp):
ATGTATCGATACATGATTCA
Found at i:678072 original size:35 final size:35
Alignment explanation
Indices: 678032--678101 Score: 122
Period size: 35 Copynumber: 2.0 Consensus size: 35
678022 TAATCTTTGG
678032 GTAAATTTAATTTCCAGGTCCAGAATCATGATTAA
1 GTAAATTTAATTTCCAGGTCCAGAATCATGATTAA
**
678067 GTAAATTTAATTTCCAGGTCTGGAATCATGATTAA
1 GTAAATTTAATTTCCAGGTCCAGAATCATGATTAA
678102 AATAAGTCCA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.36, C:0.13, G:0.16, T:0.36
Consensus pattern (35 bp):
GTAAATTTAATTTCCAGGTCCAGAATCATGATTAA
Found at i:680462 original size:13 final size:13
Alignment explanation
Indices: 680444--680469 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
680434 CAATTTTTTG
680444 TGTATCGATACAT
1 TGTATCGATACAT
680457 TGTATCGATACAT
1 TGTATCGATACAT
680470 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:681231 original size:21 final size:20
Alignment explanation
Indices: 681189--681227 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
681179 TATTAATAAA
681189 TCTCCCCCTTAATCAAGTAT
1 TCTCCCCCTTAATCAAGTAT
681209 TCTCCCCCTTAATCAAGTA
1 TCTCCCCCTTAATCAAGTA
681228 ATTCATATCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.26, C:0.36, G:0.05, T:0.33
Consensus pattern (20 bp):
TCTCCCCCTTAATCAAGTAT
Found at i:683051 original size:13 final size:13
Alignment explanation
Indices: 683033--683058 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
683023 ATAATCACCC
683033 TGTATCGATACAA
1 TGTATCGATACAA
683046 TGTATCGATACAA
1 TGTATCGATACAA
683059 AGAAAAATGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:685157 original size:15 final size:15
Alignment explanation
Indices: 685137--685167 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
685127 ATTTCGTTTG
*
685137 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
685152 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
685167 G
1 G
685168 GACATTTTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Found at i:686997 original size:21 final size:21
Alignment explanation
Indices: 686968--687012 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
686958 AAGTTTTCAT
*
686968 TTTTCTTAGCTAAC-TCATTA
1 TTTTCTTAGCCAACTTCATTA
*
686988 TTTTCATTAGCCAACTTCTTTA
1 TTTTC-TTAGCCAACTTCATTA
687010 TTT
1 TTT
687013 CAACTTGCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 8 0.38
22 8 0.38
ACGTcount: A:0.22, C:0.20, G:0.04, T:0.53
Consensus pattern (21 bp):
TTTTCTTAGCCAACTTCATTA
Found at i:689243 original size:12 final size:12
Alignment explanation
Indices: 689226--689250 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
689216 ACAATTTTTG
689226 TGTATCGATACA
1 TGTATCGATACA
689238 TGTATCGATACA
1 TGTATCGATACA
689250 T
1 T
689251 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (12 bp):
TGTATCGATACA
Found at i:689244 original size:31 final size:31
Alignment explanation
Indices: 689206--689268 Score: 92
Period size: 31 Copynumber: 2.0 Consensus size: 31
689196 GTTACAGCCA
**
689206 ATGTATCGATACAATTTTTG-TGTATCGATAC
1 ATGTATCGATAC-ATACTTGCTGTATCGATAC
689237 ATGTATCGATACATACTTGCTGTATCGATAC
1 ATGTATCGATACATACTTGCTGTATCGATAC
689268 A
1 A
689269 AGTTTGGCTA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
30 5 0.17
31 24 0.83
ACGTcount: A:0.30, C:0.16, G:0.16, T:0.38
Consensus pattern (31 bp):
ATGTATCGATACATACTTGCTGTATCGATAC
Found at i:689823 original size:40 final size:40
Alignment explanation
Indices: 689779--690114 Score: 257
Period size: 40 Copynumber: 8.4 Consensus size: 40
689769 TGATAAGTTG
* * * *
689779 ACAAATTAGAAAGGTTGATTGGGACAAAACCAACAAGTTA
1 ACAAATGAGAAAGGTTGATTGAGACAAAACTAACAAGTCA
* *
689819 ACAAATGAGAAAGGTTGACTGAGA-AGAAATTGAA-AAGTCA
1 ACAAATGAGAAAGGTTGATTGAGACA-AAACT-AACAAGTCA
** * ** * *
689859 ACAGGTGAGAAAGGTTAACCGAGATAAAACTAACAAGTTA
1 ACAAATGAGAAAGGTTGATTGAGACAAAACTAACAAGTCA
* ** * * * * * *
689899 ATAGGTGATAAGGGTTGATAGGGACAAAACCAATAAGTCA
1 ACAAATGAGAAAGGTTGATTGAGACAAAACTAACAAGTCA
* * *
689939 AAAAATGAGAAAGGTTGATTGAGATAAAACCAACAAGTCA
1 ACAAATGAGAAAGGTTGATTGAGACAAAACTAACAAGTCA
* * * * * *
689979 AGAGATGA-AAAGGTTGATTGGGACGAAATTGACAAGTCA
1 ACAAATGAGAAAGGTTGATTGAGACAAAACTAACAAGTCA
* * * *
690018 ACAAATAAGAAGGGTTGATCGAGACGAAACTAACAAGTCA
1 ACAAATGAGAAAGGTTGATTGAGACAAAACTAACAAGTCA
* * * * *
690058 ACAACTGAG-AGGGTTGATTGAGATAAAACTGACAAGTTA
1 ACAAATGAGAAAGGTTGATTGAGACAAAACTAACAAGTCA
*
690097 ACAAATGAGAAGGGTTGA
1 ACAAATGAGAAAGGTTGA
690115 CTAAAATAAA
Statistics
Matches: 234, Mismatches: 56, Indels: 12
0.77 0.19 0.04
Matches are distributed among these distances:
39 66 0.28
40 165 0.71
41 3 0.01
ACGTcount: A:0.46, C:0.10, G:0.25, T:0.19
Consensus pattern (40 bp):
ACAAATGAGAAAGGTTGATTGAGACAAAACTAACAAGTCA
Found at i:690034 original size:79 final size:80
Alignment explanation
Indices: 689779--690114 Score: 275
Period size: 79 Copynumber: 4.2 Consensus size: 80
689769 TGATAAGTTG
* * * * * *
689779 ACAAATTAGAAAGGTTGATTGGGACAAAACCAACAAGTTAACAAATGAGAAAGGTTGACTGAGA-
1 ACAAATGAGAAAGGTTGATCGAGACAAAACCAACAAGTCAACAGATGAGAAAGGTTGATTGAGAC
* *
689843 AGAAATTGAAAAGTCA
66 A-AAACTGACAAGTCA
** * * * * * * * * * * *
689859 ACAGGTGAGAAAGGTTAACCGAGATAAAACTAACAAGTTAATAGGTGATAAGGGTTGATAGGGAC
1 ACAAATGAGAAAGGTTGATCGAGACAAAACCAACAAGTCAACAGATGAGAAAGGTTGATTGAGAC
** *
689924 AAAACCAATAAGTCA
66 AAAACTGACAAGTCA
* * * * *
689939 AAAAATGAGAAAGGTTGATTGAGATAAAACCAACAAGTCAAGAGATGA-AAAGGTTGATTGGGAC
1 ACAAATGAGAAAGGTTGATCGAGACAAAACCAACAAGTCAACAGATGAGAAAGGTTGATTGAGAC
* *
690003 GAAATTGACAAGTCA
66 AAAACTGACAAGTCA
* * * * *
690018 ACAAATAAGAAGGGTTGATCGAGACGAAACTAACAAGTCAACA-ACTGAG-AGGGTTGATTGAGA
1 ACAAATGAGAAAGGTTGATCGAGACAAAACCAACAAGTCAACAGA-TGAGAAAGGTTGATTGAGA
* *
690081 TAAAACTGACAAGTTA
65 CAAAACTGACAAGTCA
*
690097 ACAAATGAGAAGGGTTGA
1 ACAAATGAGAAAGGTTGA
690115 CTAAAATAAA
Statistics
Matches: 200, Mismatches: 53, Indels: 7
0.77 0.20 0.03
Matches are distributed among these distances:
78 1 0.00
79 103 0.51
80 95 0.47
81 1 0.00
ACGTcount: A:0.46, C:0.10, G:0.25, T:0.19
Consensus pattern (80 bp):
ACAAATGAGAAAGGTTGATCGAGACAAAACCAACAAGTCAACAGATGAGAAAGGTTGATTGAGAC
AAAACTGACAAGTCA
Found at i:690390 original size:64 final size:65
Alignment explanation
Indices: 690242--690456 Score: 220
Period size: 64 Copynumber: 3.3 Consensus size: 65
690232 ATGAAACCTG
* * * * *
690242 TATAGTGAACTAAAATTAACTAGGACAAAACCTAAGTCGAAAAAGGTTGACCAGAATAAAACCAA
1 TATAGTCAACTAAAAGTGACTAGGACGAAACTTAAGTCGAAAAAGGTTGACCAGAATAAAACCAA
* * * * * ** *
690307 TATAGTCAATTACAAGTGACTAAGACGAAACTTAAGTCGAAAAGGGTTGAGCAGGGTGAAACCAA
1 TATAGTCAACTAAAAGTGACTAGGACGAAACTTAAGTCGAAAAAGGTTGACCAGAATAAAACCAA
* * * * **
690372 -ATAGTCAACTAAAAGTGACTAGGATGAAACTTAAGTCGAAAAAGATTAACTAG-GCAAAACCAA
1 TATAGTCAACTAAAAGTGACTAGGACGAAACTTAAGTCGAAAAAGGTTGACCAGAATAAAACCAA
*
690435 CATAGTCAACT-AAAGATGACTA
1 TATAGTCAACTAAAAG-TGACTA
690457 AGTCATAAAA
Statistics
Matches: 124, Mismatches: 24, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
63 12 0.10
64 60 0.48
65 52 0.42
ACGTcount: A:0.47, C:0.15, G:0.19, T:0.20
Consensus pattern (65 bp):
TATAGTCAACTAAAAGTGACTAGGACGAAACTTAAGTCGAAAAAGGTTGACCAGAATAAAACCAA
Found at i:690833 original size:65 final size:64
Alignment explanation
Indices: 690454--691532 Score: 347
Period size: 65 Copynumber: 16.8 Consensus size: 64
690444 CTAAAGATGA
* * * * * * * *
690454 CTAAGTC-ATAAAAGGTTGACTAGGGTAAAATTGATATAGTCAACTAAAGGTGGACAAGGATGAC
1 CTAAGTCGA-AAAGGGTTGACCAAGGTGAAACTGATATAGTTAACTAAAGGT-GACTAGGA-GAA
690518 AC
63 AC
* * * * ** * * * *
690520 CTAAGTCAAAAAAGGTTAACC-GGGCAAAATTAATATAGTCAACTAAAGGTGACTAAGATGAAAC
1 CTAAGTCGAAAAGGGTTGACCAAGGTGAAACTGATATAGTTAACTAAAGGTGACTAGGA-GAAAC
*** * * ** * * * *
690584 CTAAGTC-AAAAAAATATGACTAGGGCAAAACTGATATAGTCAACTAAAGGTGAATAAGATAGAA
1 CTAAGTCGAAAAGGGT-TGACCAAGGTGAAACTGATATAGTTAACTAAAGGTGACTAGGAGA-AA
690648 C
64 C
* * * * *
690649 CTAAGTCAAAAAAGGTTGACCAGACCAGAGCGAAA-TCGATATAGTCAACTAAAGGTGACTAAGA
1 CTAAGTCGAAAAGGGTTGACC--A--AG-GTGAAACT-GATATAGTTAACTAAAGGTGACTAGGA
*
690713 CAAAAC
60 -GAAAC
* ** ** * * *
690719 CTAA-T-AAACAAAAGTTGATTAAGATG-AAC-CATATAGTAAACTAAAGGTGACTAGCGCA-AA
1 CTAAGTCGAA-AAGGGTTGACCAAGGTGAAACTGATATAGTTAACTAAAGGTGACTAG-G-AGAA
690779 AC
63 AC
690781 CTAAGTCGAAAAGGGTTGACCAAGGTGAAACTGATATAGTTAACTAAAGGTGACTAGGATGAAAC
1 CTAAGTCGAAAAGGGTTGACCAAGGTGAAACTGATATAGTTAACTAAAGGTGACTAGGA-GAAAC
* * * * *
690846 CTAAGTCGAAAACGGTTGACTAAGG-CAAA-TCGATATA-ATGACT--A--TGAC----A-AAAC
1 CTAAGTCGAAAAGGGTTGACCAAGGTGAAACT-GATATAGTTAACTAAAGGTGACTAGGAGAAAC
** * * * * * * * *
690899 CTAAGTC-AAATAAAGTTGACCGAGATAAAAC-CATATGGATTAACTAAGGGTGACCAAGGCGAA
1 CTAAGTCGAAA-AGGGTTGACCAAGGTGAAACTGATATAG-TTAACTAAAGGTGA-CTAGGAGAA
*
690962 AT
63 AC
* * * * * * * *
690964 TTAAATTGAAACGGGTTGACTAAGGTGAAACCT-TTATAGTTAACTAAAGGTGGCTAAGATGAAA
1 CTAAGTCGAAAAGGGTTGACCAAGGTGAAA-CTGATATAGTTAACTAAAGGTGACTAGGA-GAAA
*
691028 T
64 C
* *** *
691029 CTAAGTCGAAAAGGGTTGA-CTAGAGTGACGTTGATATATTTAACTAAAGGTGACTAGGATGAAA
1 CTAAGTCGAAAAGGGTTGACCAAG-GTGAAACTGATATAGTTAACTAAAGGTGACTAGGA-GAAA
691093 C
64 C
* * * * * *
691094 CTAAGTTGAATAGGGTTGACCAAGGTGAAAC-CATATAATTAACTAAAAGTAACTAGGATGAAAC
1 CTAAGTCGAAAAGGGTTGACCAAGGTGAAACTGATATAGTTAACTAAAGGTGACTAGGA-GAAAC
* * * * * * * *
691158 CTAAGTTGAAAAGGATTGA-TAA-GTGCAAAACTAATATAGTCAACTACAGGTGA-TAAGACAAA
1 CTAAGTCGAAAAGGGTTGACCAAGGTG--AAACTGATATAGTTAACTAAAGGTGACTAGGA-GAA
691220 AC
63 AC
* ** * * * * * *
691222 TTAAGTAAAAAAAAGGTTGACCAAAGTGAAACCGATATAGTCAACTAAGGGTGACTAGAATGAAA
1 CTAAGT-CGAAAAGGGTTGACCAAGGTGAAACTGATATAGTTAACTAAAGGTGACTAGGA-GAAA
*
691287 T
64 C
* * ** * * *** * * *
691288 TTAAGTCAAAAAGGAGTTGGTC--GGAATGAAAC-CATACGAACCAACTAAGGGTGACCAGGGCG
1 CTAAGTCGAAAAGG-GTTGACCAAGG--TGAAACTGATA-TAGTTAACTAAAGGTGACTA-GGAG
691350 AAAC
61 AAAC
** * * * *
691354 CTAAGTC-AAAAGAATTGACCAGGGTAAAACTGATATAGTCAACTAAAGGTGACTAGGATAAAGC
1 CTAAGTCGAAAAGGGTTGACCAAGGTGAAACTGATATAGTTAACTAAAGGTGACTAGGAGAAA-C
* * * *** ** * * * *
691418 CTAAGTCGAGAAGAGTTAACTGGGGCAAAATTGATATAGTCT-ACTAAAGGTAACTAGAACAGAA
1 CTAAGTCGAAAAGGGTTGACCAAGGTGAAACTGATATAGT-TAACTAAAGGTGACTAGGAGA-AA
691482 C
64 C
* * * * * ** *
691483 CTAAGTTGAAAA-AGTTAACCAAGATAAAACCAATATAGTCAACTAAAGGT
1 CTAAGTCGAAAAGGGTTGACCAAGGTGAAACTGATATAGTTAACTAAAGGT
691533 AAGTAAGATA
Statistics
Matches: 775, Mismatches: 173, Indels: 132
0.72 0.16 0.12
Matches are distributed among these distances:
52 3 0.00
53 24 0.03
54 3 0.00
55 5 0.01
59 7 0.01
60 1 0.00
61 1 0.00
62 33 0.04
63 35 0.05
64 169 0.22
65 345 0.45
66 89 0.11
67 7 0.01
68 3 0.00
69 11 0.01
70 38 0.05
71 1 0.00
ACGTcount: A:0.44, C:0.14, G:0.21, T:0.21
Consensus pattern (64 bp):
CTAAGTCGAAAAGGGTTGACCAAGGTGAAACTGATATAGTTAACTAAAGGTGACTAGGAGAAAC
Found at i:691203 original size:129 final size:130
Alignment explanation
Indices: 690976--691210 Score: 278
Period size: 129 Copynumber: 1.8 Consensus size: 130
690966 AAATTGAAAC
* * * * ** *
690976 GGGTTGACTAAGGTGAAACCTTTATAGTTAACTAAAGGTGGCTAAGATGAAATCTAAGTCGAAAA
1 GGGTTGACCAAGGTGAAACCTATATAATTAACTAAAAGTAACTAAGATGAAACCTAAGTCGAAAA
* *** * * *
691041 GGGTTGACTAGAGTGACGTTGATATATTTAACTAAAGGTGACTAGGATGAAACCTAAGTTGAATA
66 GGATTGACTAGAGTGAAACTAATATAGTCAACTAAAGGTGACTAGGATGAAACCTAAGTTGAATA
* *
691106 GGGTTGACCAAGGTGAAACC-ATATAATTAACTAAAAGTAACTAGGATGAAACCTAAGTTGAAAA
1 GGGTTGACCAAGGTGAAACCTATATAATTAACTAAAAGTAACTAAGATGAAACCTAAGTCGAAAA
*
691170 GGATTGA-TA-AGTGCAAAACTAATATAGTCAACTACAGGTGA
66 GGATTGACTAGAGTG--AAACTAATATAGTCAACTAAAGGTGA
691211 TAAGACAAAA
Statistics
Matches: 86, Mismatches: 17, Indels: 5
0.80 0.16 0.05
Matches are distributed among these distances:
127 4 0.05
128 2 0.02
129 61 0.71
130 19 0.22
ACGTcount: A:0.40, C:0.11, G:0.23, T:0.26
Consensus pattern (130 bp):
GGGTTGACCAAGGTGAAACCTATATAATTAACTAAAAGTAACTAAGATGAAACCTAAGTCGAAAA
GGATTGACTAGAGTGAAACTAATATAGTCAACTAAAGGTGACTAGGATGAAACCTAAGTTGAATA
Found at i:692305 original size:59 final size:59
Alignment explanation
Indices: 692232--692433 Score: 192
Period size: 59 Copynumber: 3.4 Consensus size: 59
692222 GTTTAGATCG
* * *
692232 AACCAGATATCTAAA-AATGACTTGGGCGAAACCAAGACTCAATTAAATGGCTTGGACTA
1 AACCAGAAACCTAAACAATGACTTAGGC-AAACCAAGACTCAATTAAATGGCTTGGACTA
* * * ** * * *
692291 AACCAGAAACCTAAACAACGATTTAAGCAAAATAGGACTCAACTAAATGGCTTGGACGA
1 AACCAGAAACCTAAACAATGACTTAGGCAAACCAAGACTCAATTAAATGGCTTGGACTA
* * * * *
692350 AACCAAAAACCTAAACAATGACTTAGGCAAAACCAAAATTCAATGAAATGGCCTGGA-TAA
1 AACCAGAAACCTAAACAATGACTTAGGC-AAACCAAGACTCAATTAAATGGCTTGGACT-A
** *
692410 AAATAGCAACCTAAACAATGACTT
1 AACCAGAAACCTAAACAATGACTT
692434 TATATGAGCA
Statistics
Matches: 112, Mismatches: 28, Indels: 5
0.77 0.19 0.03
Matches are distributed among these distances:
59 63 0.56
60 49 0.44
ACGTcount: A:0.46, C:0.20, G:0.15, T:0.19
Consensus pattern (59 bp):
AACCAGAAACCTAAACAATGACTTAGGCAAACCAAGACTCAATTAAATGGCTTGGACTA
Found at i:692892 original size:20 final size:20
Alignment explanation
Indices: 692867--692941 Score: 132
Period size: 20 Copynumber: 3.8 Consensus size: 20
692857 TTTTACCCAG
692867 ATGTATCGATACATGATTCA
1 ATGTATCGATACATGATTCA
*
692887 ATGTATCGATACATAATTCA
1 ATGTATCGATACATGATTCA
*
692907 ATGTATCGATACATCATTCA
1 ATGTATCGATACATGATTCA
692927 ATGTATCGATACATG
1 ATGTATCGATACATG
692942 CAGGCAAATT
Statistics
Matches: 52, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 52 1.00
ACGTcount: A:0.36, C:0.16, G:0.13, T:0.35
Consensus pattern (20 bp):
ATGTATCGATACATGATTCA
Found at i:694113 original size:35 final size:35
Alignment explanation
Indices: 694073--694142 Score: 122
Period size: 35 Copynumber: 2.0 Consensus size: 35
694063 TAATCTTTGG
694073 GTAAATTTAATTTCCAGGTCCAGAATCATGATTAA
1 GTAAATTTAATTTCCAGGTCCAGAATCATGATTAA
**
694108 GTAAATTTAATTTCCAGGTCTGGAATCATGATTAA
1 GTAAATTTAATTTCCAGGTCCAGAATCATGATTAA
694143 AATAAGTCCA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.36, C:0.13, G:0.16, T:0.36
Consensus pattern (35 bp):
GTAAATTTAATTTCCAGGTCCAGAATCATGATTAA
Found at i:696503 original size:13 final size:13
Alignment explanation
Indices: 696485--696510 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
696475 CAATTTTTTG
696485 TGTATCGATACAT
1 TGTATCGATACAT
696498 TGTATCGATACAT
1 TGTATCGATACAT
696511 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:697271 original size:21 final size:20
Alignment explanation
Indices: 697229--697267 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
697219 TATTAATAAA
697229 TCTCCCCCTTAATCAAGTAT
1 TCTCCCCCTTAATCAAGTAT
697249 TCTCCCCCTTAATCAAGTA
1 TCTCCCCCTTAATCAAGTA
697268 ATTCATATCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.26, C:0.36, G:0.05, T:0.33
Consensus pattern (20 bp):
TCTCCCCCTTAATCAAGTAT
Found at i:699091 original size:13 final size:13
Alignment explanation
Indices: 699073--699098 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
699063 ATAATCACCC
699073 TGTATCGATACAA
1 TGTATCGATACAA
699086 TGTATCGATACAA
1 TGTATCGATACAA
699099 AGAAAAATGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:701197 original size:15 final size:15
Alignment explanation
Indices: 701177--701207 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
701167 ATTTCGTTTG
*
701177 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
701192 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
701207 G
1 G
701208 GACATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Found at i:703041 original size:21 final size:21
Alignment explanation
Indices: 703012--703056 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
703002 AAGTTTTCAT
*
703012 TTTTCTTAGCTAAC-TCATTA
1 TTTTCTTAGCCAACTTCATTA
*
703032 TTTTCATTAGCCAACTTCTTTA
1 TTTTC-TTAGCCAACTTCATTA
703054 TTT
1 TTT
703057 CAACTTGCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 8 0.38
22 8 0.38
ACGTcount: A:0.22, C:0.20, G:0.04, T:0.53
Consensus pattern (21 bp):
TTTTCTTAGCCAACTTCATTA
Found at i:705996 original size:40 final size:40
Alignment explanation
Indices: 705820--706157 Score: 248
Period size: 40 Copynumber: 8.4 Consensus size: 40
705810 TGATAAGTTG
* * *
705820 ACAAATTAGAAAGGTTGATTGGGACAAAACCAACAAGTTA
1 ACAAATGAGAAAGGTTGATTGAGACAAAACCAACAAGTCA
* **
705860 ACAAATGAGAAAGGTTGACTGAGA-AGAAATTGAA-AAGTCA
1 ACAAATGAGAAAGGTTGATTGAGACA-AAA-CCAACAAGTCA
** * ** * * *
705900 ACAGGTGAGAAAGGTTAACCGAGATAAAACTAACAAGTTA
1 ACAAATGAGAAAGGTTGATTGAGACAAAACCAACAAGTCA
* ** * * * * *
705940 ATAGGTGATAAGGGTTGATAGGGACAAAACCAATAAGTCA
1 ACAAATGAGAAAGGTTGATTGAGACAAAACCAACAAGTCA
* *
705980 AAAAATGAGAAAGGTTGATTGAGATAAAACCAACAAGTCA
1 ACAAATGAGAAAGGTTGATTGAGACAAAACCAACAAGTCA
* * * * * ***
706020 AGAGATGAAAAAGGTTGATTGGGACGAAATTGACAAGTCA
1 ACAAATGAGAAAGGTTGATTGAGACAAAACCAACAAGTCA
* * * * *
706060 ACAAATAAGAAGGGTTGATCGAGACGAAACTAACAAGTCA
1 ACAAATGAGAAAGGTTGATTGAGACAAAACCAACAAGTCA
* * * ** *
706100 ACAACTGAGAAGGGTTGATTGAGATAAAACTGACAAGTTA
1 ACAAATGAGAAAGGTTGATTGAGACAAAACCAACAAGTCA
*
706140 ACAAATGAGAAGGGTTGA
1 ACAAATGAGAAAGGTTGA
706158 CTAAAATAAA
Statistics
Matches: 235, Mismatches: 59, Indels: 8
0.78 0.20 0.03
Matches are distributed among these distances:
39 3 0.01
40 229 0.97
41 3 0.01
ACGTcount: A:0.46, C:0.10, G:0.25, T:0.19
Consensus pattern (40 bp):
ACAAATGAGAAAGGTTGATTGAGACAAAACCAACAAGTCA
Found at i:706056 original size:120 final size:119
Alignment explanation
Indices: 705820--706129 Score: 298
Period size: 120 Copynumber: 2.6 Consensus size: 119
705810 TGATAAGTTG
* * * * *
705820 ACAAATTAGAAAGGTTGATTGGGACAAAACCAACAAGTTAACAAATGAGAAAGGTTGACTGAGA-
1 ACAAATAAGAAGGGTTGATAGGGACAAAACCAACAAGTCAACAAATGAGAAAGGTTGATTGAGAT
** * * * *
705884 AGAAATTGAAAAGTCAACAGGTGAGAAAGGTTAACCGAGATAAAACTAACAAGTTA
66 A-AAA-CCAAAAGTCAACAGATGAAAAAGGTTAACCGAGACAAAACTAACAAGTCA
* ** * * * *
705940 ATAGGTGATAAGGGTTGATAGGGACAAAACCAATAAGTCAAAAAATGAGAAAGGTTGATTGAGAT
1 ACAAATAAGAAGGGTTGATAGGGACAAAACCAACAAGTCAACAAATGAGAAAGGTTGATTGAGAT
* * ** * * * *
706005 AAAACCAACAAGTCAAGAGATGAAAAAGGTTGATTGGGACGAAATTGACAAGTCA
66 AAAACCAA-AAGTCAACAGATGAAAAAGGTTAACCGAGACAAAACTAACAAGTCA
* * * * * *
706060 ACAAATAAGAAGGGTTGATCGAGACGAAACTAACAAGTCAACAACTGAGAAGGGTTGATTGAGAT
1 ACAAATAAGAAGGGTTGATAGGGACAAAACCAACAAGTCAACAAATGAGAAAGGTTGATTGAGAT
706125 AAAAC
66 AAAAC
706130 TGACAAGTTA
Statistics
Matches: 150, Mismatches: 38, Indels: 4
0.78 0.20 0.02
Matches are distributed among these distances:
119 2 0.01
120 147 0.98
121 1 0.01
ACGTcount: A:0.47, C:0.11, G:0.24, T:0.18
Consensus pattern (119 bp):
ACAAATAAGAAGGGTTGATAGGGACAAAACCAACAAGTCAACAAATGAGAAAGGTTGATTGAGAT
AAAACCAAAAGTCAACAGATGAAAAAGGTTAACCGAGACAAAACTAACAAGTCA
Found at i:706167 original size:40 final size:39
Alignment explanation
Indices: 705697--706198 Score: 197
Period size: 40 Copynumber: 12.6 Consensus size: 39
705687 AAACCAATAC
* **
705697 GTCAACAAATGAGAAGGGTTGACT-AGGGTAAGTC-GACAA
1 GTCAACAAATGAGAAGGGTTGA-TGA-GATAAAACTGACAA
** * * * * *
705736 GTCAACAGCTGAGAAGGATCTGTTGAGATGAAA-TCAATAA
1 GTCAACAAATGAGAAGGGT-TGATGAGATAAAACT-GACAA
* * ** * *
705776 TTCAACAAAT-AAAAGTGGTTGACCAGGATGAAACTGATAA
1 GTCAACAAATGAGAAG-GGTTGATGA-GATAAAACTGACAA
** * * * * **
705816 GTTGACAAATTAGAAAGGTTGATTGGGACAAAACCAACAA
1 GTCAACAAATGAGAAGGGTTGA-TGAGATAAAACTGACAA
* * * *
705856 GTTAACAAATGAGAAAGGTTGACTGAGA-AGAAATTGAAAA
1 GTCAACAAATGAGAAGGGTTGA-TGAGATA-AAACTGACAA
** * * * *
705896 GTCAACAGGTGAGAAAGGTTAACCGAGATAAAACTAACAA
1 GTCAACAAATGAGAAGGGTTGA-TGAGATAAAACTGACAA
* * ** * * * ** *
705936 GTTAATAGGTGATAAGGGTTGATAGGGACAAAACCAATAA
1 GTCAACAAATGAGAAGGGTTGAT-GAGATAAAACTGACAA
* * **
705976 GTCAAAAAATGAGAAAGGTTGATTGAGATAAAACCAACAA
1 GTCAACAAATGAGAAGGGTTGA-TGAGATAAAACTGACAA
* * * * * ** *
706016 GTCAAGAGATGAAAAAGGTTGATTGGGACGAAATTGACAA
1 GTCAACAAATGAGAAGGGTTGA-TGAGATAAAACTGACAA
* ** *
706056 GTCAACAAATAAGAAGGGTTGATCGAGACGAAACTAACAA
1 GTCAACAAATGAGAAGGGTTGAT-GAGATAAAACTGACAA
*
706096 GTCAACAACTGAGAAGGGTTGATTGAGATAAAACTGACAA
1 GTCAACAAATGAGAAGGGTTGA-TGAGATAAAACTGACAA
* * * *
706136 GTTAACAAATGAGAAGGGTTGACTAAAATAAAA-TCGATAA
1 GTCAACAAATGAGAAGGGTTGA-TGAGATAAAACT-GACAA
** *
706176 GTCAACAGGTGAGAAGAGTTGAT
1 GTCAACAAATGAGAAGGGTTGAT
706199 CGTATAAAGC
Statistics
Matches: 348, Mismatches: 99, Indels: 32
0.73 0.21 0.07
Matches are distributed among these distances:
39 31 0.09
40 310 0.89
41 7 0.02
ACGTcount: A:0.45, C:0.11, G:0.25, T:0.20
Consensus pattern (39 bp):
GTCAACAAATGAGAAGGGTTGATGAGATAAAACTGACAA
Found at i:706178 original size:120 final size:120
Alignment explanation
Indices: 705949--706219 Score: 265
Period size: 120 Copynumber: 2.3 Consensus size: 120
705939 AATAGGTGAT
* * *
705949 AAGGGTTGATAGGGACAAAACCAATAAGTCAAAAAATGAGAAAGGTTGATTGAGATAAAACCAAC
1 AAGGGTTGATCGAGACAAAACCAACAAGTCAAAAAATGAGAAAGGTTGATTGAGATAAAACCAAC
* * * *** * *
706014 AAGTCAAGAGATGAAAAAGGTTGATTGGGACGAAATTGACAAGTCAACAAATAAG
66 AAGTCAACAAATGAAAAAGGTTGACTAAAACAAAATCGACAAGTCAACAAATAAG
* * * * * **
706069 AAGGGTTGATCGAGACGAAACTAACAAGTCAACAACTGAGAAGGGTTGATTGAGATAAAACTGAC
1 AAGGGTTGATCGAGACAAAACCAACAAGTCAAAAAATGAGAAAGGTTGATTGAGATAAAACCAAC
* * * * * ** *
706134 AAGTTAACAAATGAGAAGGGTTGACTAAAATAAAATCGATAAGTCAACAGGTGAG
66 AAGTCAACAAATGAAAAAGGTTGACTAAAACAAAATCGACAAGTCAACAAATAAG
* * * *
706189 AAGAGTTGATCG-TATAAAGCCAACAAGTCAA
1 AAGGGTTGATCGAGACAAAACCAACAAGTCAA
706220 CAAGTTTAAG
Statistics
Matches: 119, Mismatches: 32, Indels: 1
0.78 0.21 0.01
Matches are distributed among these distances:
119 14 0.12
120 105 0.88
ACGTcount: A:0.46, C:0.11, G:0.24, T:0.18
Consensus pattern (120 bp):
AAGGGTTGATCGAGACAAAACCAACAAGTCAAAAAATGAGAAAGGTTGATTGAGATAAAACCAAC
AAGTCAACAAATGAAAAAGGTTGACTAAAACAAAATCGACAAGTCAACAAATAAG
Found at i:706385 original size:65 final size:63
Alignment explanation
Indices: 706302--706908 Score: 244
Period size: 65 Copynumber: 9.5 Consensus size: 63
706292 ACTAAAATTA
* * * ** *
706302 ACTAGGACAAAACCTAAGTCGAAAAAGGTTGACCAGAATAAAACCAATATAGTCAATTACAAGTG
1 ACTAAGACGAAACTTAAGTCGAAAAAGGTTGACCAGGGTAAAACCAA-ATAGTCAACTA-AAGTG
* * *
706367 ACTAAGACGAAACTTAAGTCGAAAAGGGTTGAGCAGGGTGAAACCAAATAGTCAACTAAAAGTG
1 ACTAAGACGAAACTTAAGTCGAAAAAGGTTGACCAGGGTAAAACCAAATAGTCAACT-AAAGTG
* * * * * *
706431 ACTAGGATGAAACTTAAGTCGAAAAAGATTAACTAGGGCAAAACCAACATAGTCAACTAAAG-G
1 ACTAAGACGAAACTTAAGTCGAAAAAGGTTGACCAGGGTAAAACCAA-ATAGTCAACTAAAGTG
* * ** *
706494 --T-----G--AC-TAAGTCGTAAAAGGTTGACTAGGGTAAAATTGATATAGTCAACTAAAGGTG
1 ACTAAGACGAAACTTAAGTCGAAAAAGGTTGACCAGGGTAAAA-CCAAATAGTCAACTAAA-GTG
* * * * * * * **
706549 AC-AAGGATGACACCTAAGTCAAAAAAGGTTAACCGGGGCAAAATTAATATAGTCAACTAAAGGT
1 ACTAA-GACGAAACTTAAGTCGAAAAAGGTTGACCAGGGTAAAACCAA-ATAGTCAACTAAA-GT
706613 G
63 G
* * ** * * * *
706614 ACTAAGATGAAACCTAAGTC-AAAAAAATATGACTAGGGCAAAACTGATATAGTCAACTAAAGGT
1 ACTAAGACGAAACTTAAGTCGAAAAAGGT-TGACCAGGGTAAAAC-CAAATAGTCAACTAAA-GT
706678 G
63 G
* * * * * * * *
706679 AATAAGA-TAGAACCTAAGTCAAAAAAGGTTGACCAGACCAGAGCGAAATCGATATAGTCAACTA
1 ACTAAGACGA-AACTTAAGTCGAAAAAGGTTGACCAG----G-G-TAAAACCAAATAGTCAACTA
706743 AAGGTG
59 AA-GTG
* * * * ** * * * * *
706749 ACTAAGACAAAACCTAA-T-AAACAAAAGTTGATTAAGAT-GAACCATATAGTAAACTAAAGGTG
1 ACTAAGACGAAACTTAAGTCGAA-AAAGGTTGACCAGGGTAAAACCAAATAGTCAACTAAA-GTG
* * * * * * *
706811 ACT-AG-CGCAAAACCTAAGTCGAAAAGGGTTGACCAAGGTGAAACTGATATAGTTAACTAAAGG
1 ACTAAGACG--AAACTTAAGTCGAAAAAGGTTGACCAGGGTAAAAC-CAAATAGTCAACTAAA-G
706874 TG
62 TG
* * * *
706876 ACTAGGATGAAACCTAAGTCGAAAACGGTTGAC
1 ACTAAGACGAAACTTAAGTCGAAAAAGGTTGAC
706909 TAAGGCAAAA
Statistics
Matches: 430, Mismatches: 74, Indels: 76
0.74 0.13 0.13
Matches are distributed among these distances:
53 38 0.09
54 4 0.01
55 1 0.00
56 1 0.00
60 1 0.00
61 3 0.01
62 32 0.07
63 13 0.03
64 72 0.17
65 201 0.47
66 10 0.02
67 1 0.00
68 3 0.01
69 11 0.03
70 34 0.08
71 5 0.01
ACGTcount: A:0.45, C:0.15, G:0.21, T:0.19
Consensus pattern (63 bp):
ACTAAGACGAAACTTAAGTCGAAAAAGGTTGACCAGGGTAAAACCAAATAGTCAACTAAAGTG
Found at i:706925 original size:65 final size:64
Alignment explanation
Indices: 706497--707610 Score: 456
Period size: 65 Copynumber: 17.3 Consensus size: 64
706487 CTAAAGGTGA
* * * * * *
706497 CTAAGTCGTAAAAGGTTGACTAGGGTAAAATTGATATAGTCAACTAAAGGTGACAAGGATGACAC
1 CTAAGTCGAAAAAGGTTGACCAAGGTAAAA-CGATATAGTCAACTAAAGGTGACTAGGATGAAAC
* * ** * ** *
706562 CTAAGTCAAAAAAGGTTAACCGGGGCAAAATTAATATAGTCAACTAAAGGTGACTAAGATGAAAC
1 CTAAGTCGAAAAAGGTTGACCAAGGTAAAA-CGATATAGTCAACTAAAGGTGACTAGGATGAAAC
** * * * * *
706627 CTAAGTC-AAAAAAATATGACTAGGGCAAAACTGATATAGTCAACTAAAGGTGAATAAGAT-AGA
1 CTAAGTCGAAAAAGGT-TGACCAAGGTAAAAC-GATATAGTCAACTAAAGGTGACTAGGATGA-A
706690 AC
63 AC
* * * * *
706692 CTAAGTCAAAAAAGGTTGACCAGACCAGAGCGAAATCGATATAGTCAACTAAAGGTGACTAAGAC
1 CTAAGTCGAAAAAGGTTGACC--A--AG-G-TAAAACGATATAGTCAACTAAAGGTGACTAGGAT
*
706757 AAAAC
60 GAAAC
* * ** * * * *
706762 CTAA-T-AAACAAAAGTTGATTAAGAT-GAACCATATAGTAAACTAAAGGTGACTAGCGCA--AA
1 CTAAGTCGAA-AAAGGTTGACCAAGGTAAAACGATATAGTCAACTAAAGGTGACTAG-G-ATGAA
706822 AC
63 AC
* * *
706824 CTAAGTCGAAAAGGGTTGACCAAGGTGAAACTGATATAGTTAACTAAAGGTGACTAGGATGAAAC
1 CTAAGTCGAAAAAGGTTGACCAAGGTAAAAC-GATATAGTCAACTAAAGGTGACTAGGATGAAAC
* * * * *
706889 CTAAGTCGAAAACGGTTGACTAAGGCAAAATCGATATAAT-GACT--A--TGAC----A--AAAC
1 CTAAGTCGAAAAAGGTTGACCAAGGTAAAA-CGATATAGTCAACTAAAGGTGACTAGGATGAAAC
* * * * * * * * *
706943 CTAAGTC-AAATAAAGTTGACCGAGATAAAACCATATGGATTAACTAAGGGTGACCAAGG-CGAA
1 CTAAGTCGAAA-AAGGTTGACCAAGGTAAAACGATATAG-TCAACTAAAGGTGA-CTAGGATGAA
*
707006 AT
63 AC
* * * * * ** * * * *
707008 TTAAATTGAAAAGGGTTGACCAAGGTGAAACCTTTATAGTTAACTAAAGGTGGCTAAGATGAAAT
1 CTAAGTCGAAAAAGGTTGACCAAGGT-AAAACGATATAGTCAACTAAAGGTGACTAGGATGAAAC
* * **** * *
707073 CTAAGTCGAAAAGGGTTGA-CTAGAGTGACGTTGATATATTTAACTAAAGGTGACTAGGATGAAA
1 CTAAGTCGAAAAAGGTTGACCAAG-GT-AAAACGATATAGTCAACTAAAGGTGACTAGGATGAAA
707137 C
64 C
* * * * * * * * *
707138 CTAAGTTGAATAGGGTTGACCAAGGTGAAACCAATATAATTAACTAAAAGTAACTAGGATGAAAC
1 CTAAGTCGAAAAAGGTTGACCAAGGT-AAAACGATATAGTCAACTAAAGGTGACTAGGATGAAAC
* * * * * * * **
707203 CTAAGTTG-AAAAGGATTGA-TAAGTGCAAAACTAATATAGTCAACTACAGATGA-TAAGACAAA
1 CTAAGTCGAAAAAGG-TTGACCAAG-GTAAAAC-GATATAGTCAACTAAAGGTGACTAGGATGAA
707265 AC
63 AC
* ** * * * * *
707267 TTAAGTAAAAAAAGGTTGACCAAAGTGAAACCGATATAGTCAACTAAGGGTGACTAGAATGAAAT
1 CTAAGTCGAAAAAGGTTGACCAAGGT-AAAACGATATAGTCAACTAAAGGTGACTAGGATGAAAC
* ** * * * ** * * **
707332 TTAAGTC-AAAAAGGAGTTGGTC--GGAATGAAACCATACGAACCAACTAAGGGTGACCAGGGCG
1 CTAAGTCGAAAAA-G-GTTGACCAAGG--TAAAACGATA-TAGTCAACTAAAGGTGACTAGGATG
707394 AAAC
61 AAAC
* *
707398 CTAAGTC-AAAAAGAATTGACCAGGGTAAAACTGATATAGTCAACTAAAGGTGACTAGGAT-AAA
1 CTAAGTCGAAAAAG-GTTGACCAAGGTAAAAC-GATATAGTCAACTAAAGGTGACTAGGATGAAA
707461 GC
64 -C
* * *** * * * * **
707463 CTAAGTCG-AGAAGAGTTAACTGGGGCAAAATTGATATAGTCTACTAAAGGTAACTA-GAACAGA
1 CTAAGTCGAAAAAG-GTTGACCAAGGTAAAA-CGATATAGTCAACTAAAGGTGACTAGGATGA-A
707526 AC
63 AC
* * * * * * * *
707528 CTAAGTTGAAAAA-GTTAACCAAGATAAAACCAATATAGTCAACTAAAGGTAAGTAAGATAAAAC
1 CTAAGTCGAAAAAGGTTGACCAAGGTAAAA-CGATATAGTCAACTAAAGGTGACTAGGATGAAAC
* *
707592 CTAAATTGAAAAAGGTTGA
1 CTAAGTCGAAAAAGGTTGA
707611 TTAGGGCGAA
Statistics
Matches: 798, Mismatches: 188, Indels: 126
0.72 0.17 0.11
Matches are distributed among these distances:
53 8 0.01
54 25 0.03
55 3 0.00
56 1 0.00
59 3 0.00
60 5 0.01
62 33 0.04
63 14 0.02
64 127 0.16
65 456 0.57
66 67 0.08
67 4 0.01
68 3 0.00
69 10 0.01
70 34 0.04
71 5 0.01
ACGTcount: A:0.44, C:0.13, G:0.21, T:0.21
Consensus pattern (64 bp):
CTAAGTCGAAAAAGGTTGACCAAGGTAAAACGATATAGTCAACTAAAGGTGACTAGGATGAAAC
Found at i:708351 original size:59 final size:59
Alignment explanation
Indices: 708278--708479 Score: 192
Period size: 59 Copynumber: 3.4 Consensus size: 59
708268 GTTTAGATCG
* * *
708278 AACCAGATATCTAAA-AATGACTTGGGCGAAACCAAGACTCAATTAAATGGCTTGGACTA
1 AACCAGAAACCTAAACAATGACTTAGGC-AAACCAAGACTCAATTAAATGGCTTGGACTA
* * * ** * * *
708337 AACCAGAAACCTAAACAACGATTTAAGCAAAATAGGACTCAACTAAATGGCTTGGACGA
1 AACCAGAAACCTAAACAATGACTTAGGCAAACCAAGACTCAATTAAATGGCTTGGACTA
* * * * *
708396 AACCAAAAACCTAAACAATGACTTAGGCAAAACCAAAATTCAATGAAATGGCCTGGA-TAA
1 AACCAGAAACCTAAACAATGACTTAGGC-AAACCAAGACTCAATTAAATGGCTTGGACT-A
** *
708456 AAATAGCAACCTAAACAATGACTT
1 AACCAGAAACCTAAACAATGACTT
708480 TATATGAGCA
Statistics
Matches: 112, Mismatches: 28, Indels: 5
0.77 0.19 0.03
Matches are distributed among these distances:
59 63 0.56
60 49 0.44
ACGTcount: A:0.46, C:0.20, G:0.15, T:0.19
Consensus pattern (59 bp):
AACCAGAAACCTAAACAATGACTTAGGCAAACCAAGACTCAATTAAATGGCTTGGACTA
Found at i:708938 original size:20 final size:20
Alignment explanation
Indices: 708913--708987 Score: 132
Period size: 20 Copynumber: 3.8 Consensus size: 20
708903 TTTTACCCAG
708913 ATGTATCGATACATGATTCA
1 ATGTATCGATACATGATTCA
*
708933 ATGTATCGATACATAATTCA
1 ATGTATCGATACATGATTCA
*
708953 ATGTATCGATACATCATTCA
1 ATGTATCGATACATGATTCA
708973 ATGTATCGATACATG
1 ATGTATCGATACATG
708988 CAGGCAAATT
Statistics
Matches: 52, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 52 1.00
ACGTcount: A:0.36, C:0.16, G:0.13, T:0.35
Consensus pattern (20 bp):
ATGTATCGATACATGATTCA
Found at i:710147 original size:35 final size:35
Alignment explanation
Indices: 710107--710176 Score: 122
Period size: 35 Copynumber: 2.0 Consensus size: 35
710097 TAATCTTTGG
*
710107 GTAAATTTAATTTCCATGTCTAGAATCATGATTAA
1 GTAAATTTAATTTCCAGGTCTAGAATCATGATTAA
*
710142 GTAAATTTAATTTCCAGGTCTGGAATCATGATTAA
1 GTAAATTTAATTTCCAGGTCTAGAATCATGATTAA
710177 AATAAGTCCA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.36, C:0.11, G:0.14, T:0.39
Consensus pattern (35 bp):
GTAAATTTAATTTCCAGGTCTAGAATCATGATTAA
Found at i:716028 original size:18 final size:17
Alignment explanation
Indices: 716007--716068 Score: 67
Period size: 18 Copynumber: 3.6 Consensus size: 17
715997 ATGAAAAAGT
716007 CAAGAAAAAAAACAAAGA
1 CAAGAAAAAAAACAAA-A
*
716025 CAAGAAAAAAAA-GAAA
1 CAAGAAAAAAAACAAAA
716041 -AAGAAAAAAACACAAAA
1 CAAGAAAAAAA-ACAAAA
716058 TCAA-AAAAAAA
1 -CAAGAAAAAAA
716069 GTGCAAAGGC
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
15 10 0.26
16 2 0.05
17 5 0.13
18 19 0.50
19 2 0.05
ACGTcount: A:0.81, C:0.10, G:0.08, T:0.02
Consensus pattern (17 bp):
CAAGAAAAAAAACAAAA
Found at i:716335 original size:17 final size:18
Alignment explanation
Indices: 716308--716352 Score: 56
Period size: 18 Copynumber: 2.5 Consensus size: 18
716298 TTCTTCTCCC
*
716308 AACACAAAAAAAAGAA-AA
1 AACA-AAAAAAAACAACAA
*
716326 AAGAAAAAAAAACAACAA
1 AACAAAAAAAAACAACAA
716344 AACAAAAAA
1 AACAAAAAA
716353 TCTTGGTGAG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
17 10 0.43
18 13 0.57
ACGTcount: A:0.84, C:0.11, G:0.04, T:0.00
Consensus pattern (18 bp):
AACAAAAAAAAACAACAA
Found at i:716764 original size:19 final size:19
Alignment explanation
Indices: 716718--716789 Score: 92
Period size: 19 Copynumber: 3.7 Consensus size: 19
716708 TTTCAACAAT
*
716718 TTGTATCGATACA-AATTG
1 TTGTATCGATACATAAGTG
716736 TAACTGTATCGATACATAAGTG
1 T---TGTATCGATACATAAGTG
*
716758 TTGTATCGATACATAAGTT
1 TTGTATCGATACATAAGTG
716777 TTGTATCGATACA
1 TTGTATCGATACA
716790 ATGTATCGTT
Statistics
Matches: 48, Mismatches: 2, Indels: 7
0.84 0.04 0.12
Matches are distributed among these distances:
18 1 0.02
19 30 0.62
21 12 0.25
22 5 0.10
ACGTcount: A:0.33, C:0.12, G:0.17, T:0.38
Consensus pattern (19 bp):
TTGTATCGATACATAAGTG
Found at i:721020 original size:30 final size:30
Alignment explanation
Indices: 720984--721174 Score: 253
Period size: 30 Copynumber: 6.3 Consensus size: 30
720974 CACCATTCTT
720984 AAAGTCCACGACTCAGTGGCATCTC-TTCAC
1 AAAGTCCACGACTCAGTGGCATCTCTTTC-C
*
721014 AAAGTCCACGATTCAGTGGCATCTCTTTTCCC
1 AAAGTCCACGACTCAGTGGCATCTC-TTT-CC
*
721046 AAGGTCCACGACTCAGTGGCATCTCTTTCC
1 AAAGTCCACGACTCAGTGGCATCTCTTTCC
*
721076 AAAGTCCACGACTCAGTGGCATCTCTTTTC
1 AAAGTCCACGACTCAGTGGCATCTCTTTCC
* * *
721106 TAAGTCCACGACTCTGTGGCA-CCCTTTCC
1 AAAGTCCACGACTCAGTGGCATCTCTTTCC
* *
721135 AAAGTCCACGACTTAGTGGCCTCTCTTATCC
1 AAAGTCCACGACTCAGTGGCATCTCTT-TCC
721166 -AAGTCCACG
1 AAAGTCCACG
721175 CCTCTATGGT
Statistics
Matches: 142, Mismatches: 14, Indels: 10
0.86 0.08 0.06
Matches are distributed among these distances:
29 23 0.16
30 86 0.61
31 6 0.04
32 26 0.18
33 1 0.01
ACGTcount: A:0.23, C:0.33, G:0.17, T:0.27
Consensus pattern (30 bp):
AAAGTCCACGACTCAGTGGCATCTCTTTCC
Found at i:721053 original size:62 final size:60
Alignment explanation
Indices: 720985--721174 Score: 269
Period size: 62 Copynumber: 3.1 Consensus size: 60
720975 ACCATTCTTA
720985 AAGTCCACGACTCAGTGGCATCTC-TTCACAAAGTCCACGATTCAGTGGCATCTCTTTTCCC
1 AAGTCCACGACTCAGTGGCATCTCTTTC-CAAAGTCCACGATTCAGTGGCATCTCTTTT-CC
* *
721046 AAGGTCCACGACTCAGTGGCATCTCTTTCCAAAGTCCACGACTCAGTGGCATCTCTTTTCT
1 AA-GTCCACGACTCAGTGGCATCTCTTTCCAAAGTCCACGATTCAGTGGCATCTCTTTTCC
* * * *
721107 AAGTCCACGACTCTGTGGCA-CCCTTTCCAAAGTCCACGACTT-AGTGGCCTCTCTTATCC
1 AAGTCCACGACTCAGTGGCATCTCTTTCCAAAGTCCACGA-TTCAGTGGCATCTCTTTTCC
721166 AAGTCCACG
1 AAGTCCACG
721175 CCTCTATGGT
Statistics
Matches: 118, Mismatches: 8, Indels: 8
0.88 0.06 0.06
Matches are distributed among these distances:
59 41 0.35
60 18 0.15
61 5 0.04
62 51 0.43
63 3 0.03
ACGTcount: A:0.22, C:0.33, G:0.17, T:0.27
Consensus pattern (60 bp):
AAGTCCACGACTCAGTGGCATCTCTTTCCAAAGTCCACGATTCAGTGGCATCTCTTTTCC
Found at i:721099 original size:92 final size:90
Alignment explanation
Indices: 720984--721174 Score: 260
Period size: 92 Copynumber: 2.1 Consensus size: 90
720974 CACCATTCTT
* * *
720984 AAAGTCCACGACTCAGTGGCATCTCTTCACAAAGTCCACGATTCAGTGGCATCTCTTTTCCCAAG
1 AAAGTCCACGACTCAGTGGCATCTCTTCACAAAGTCCACGACTCAGTGGCA-C-CCTTT-CCAAA
721049 GTCCACGACTCAGTGGCATCTCTT-TCC
63 GTCCACGACTCAGTGGCATCTCTTATCC
** * *
721076 AAAGTCCACGACTCAGTGGCATCTCTTTTCTAAGTCCACGACTCTGTGGCACCCTTTCCAAAGTC
1 AAAGTCCACGACTCAGTGGCATCTCTTCACAAAGTCCACGACTCAGTGGCACCCTTTCCAAAGTC
* *
721141 CACGACTTAGTGGCCTCTCTTATCC
66 CACGACTCAGTGGCATCTCTTATCC
721166 -AAGTCCACG
1 AAAGTCCACG
721175 CCTCTATGGT
Statistics
Matches: 89, Mismatches: 9, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
89 35 0.39
90 7 0.08
91 1 0.01
92 46 0.52
ACGTcount: A:0.23, C:0.33, G:0.17, T:0.27
Consensus pattern (90 bp):
AAAGTCCACGACTCAGTGGCATCTCTTCACAAAGTCCACGACTCAGTGGCACCCTTTCCAAAGTC
CACGACTCAGTGGCATCTCTTATCC
Found at i:721252 original size:61 final size:61
Alignment explanation
Indices: 721180--721341 Score: 220
Period size: 61 Copynumber: 2.7 Consensus size: 61
721170 CCACGCCTCT
*
721180 ATGGTACCTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACCCTTCTAAGTCCACAACACC
1 ATGGCACCTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACCCTTCTAAGTCCACAACACC
* * * * **
721241 GTGGCACCTTTTTCTTTTCAAAGCCCACAACTTCGTGGCACCCTTTTAAGTCCACAACTTC
1 ATGGCACCTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACCCTTCTAAGTCCACAACACC
* * *
721302 ATGGTACC-TTTTCCTTTT-AAGTCCACAACTCCGTGGCACC
1 ATGGCACCTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACC
721342 TTTTAAAAGC
Statistics
Matches: 88, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
59 20 0.23
60 8 0.09
61 60 0.68
ACGTcount: A:0.22, C:0.33, G:0.13, T:0.31
Consensus pattern (61 bp):
ATGGCACCTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACCCTTCTAAGTCCACAACACC
Found at i:721319 original size:32 final size:32
Alignment explanation
Indices: 721221--722266 Score: 476
Period size: 27 Copynumber: 34.1 Consensus size: 32
721211 TCCGTGGCAC
* **
721221 CCTTCTAAGTCCACAACACCGTGGCACCTTTT
1 CCTTTTAAGTCCACAACTTCGTGGCACCTTTT
* *
721253 TCTTTTCAAAGCCCACAACTTCGTGGCA-C----
1 CCTTTT--AAGTCCACAACTTCGTGGCACCTTTT
* *
721282 CCTTTTAAGTCCACAACTTCATGGTACCTTTT
1 CCTTTTAAGTCCACAACTTCGTGGCACCTTTT
*
721314 CCTTTTAAGTCCACAACTCCGTGGCACC--TT
1 CCTTTTAAGTCCACAACTTCGTGGCACCTTTT
** * * * ** *
721344 --TTAAAAGCCCATAACTCCACGACACCTTTT
1 CCTTTTAAGTCCACAACTTCGTGGCACCTTTT
* *
721374 CC-TTTAAGTGCACAACTTCGTGGCACTTTTT
1 CCTTTTAAGTCCACAACTTCGTGGCACCTTTT
* *
721405 TCTTTTAAGTCCATAAC-TCTGTGGCA-C----
1 CCTTTTAAGTCCACAACTTC-GTGGCACCTTTT
* * *
721432 CCTTTAAAGCCCACAACTCCGTGGCACCTTTT
1 CCTTTTAAGTCCACAACTTCGTGGCACCTTTT
* *
721464 CCTTTTAAGTCCACAACTCCGT-G-A----TA
1 CCTTTTAAGTCCACAACTTCGTGGCACCTTTT
* * * *
721490 CCATTTAAAGCCCATAATTTCGTGGCACCCTTTTT
1 CC-TTTTAAGTCCACAACTTCGTGGCA-CC-TTTT
*
721525 CCTTTTAAGTCCACAAC-TCCTGGCA-C----
1 CCTTTTAAGTCCACAACTTCGTGGCACCTTTT
* * * * * *
721551 ACTTTAAAGCCCATAACTCCGTGGCACATTTT
1 CCTTTTAAGTCCACAACTTCGTGGCACCTTTT
*
721583 CCTTTTAAGTCCACAACTTCGTGGCACTTTTT
1 CCTTTTAAGTCCACAACTTCGTGGCACCTTTT
* *
721615 CTTTTTAAGTCCACAACTCCGTGGCA-C----
1 CCTTTTAAGTCCACAACTTCGTGGCACCTTTT
* * * *
721642 CCTTTAAAGCCCACAATTTCATGGCACCTTTTTT
1 CCTTTTAAGTCCACAACTTCGTGGCACC--TTTT
721676 CCTTTTAAGTCCACAAC-TCTGTGGCACCTTTT
1 CCTTTTAAGTCCACAACTTC-GTGGCACCTTTT
* *
721708 CCTTTTAAGTCCACAACTCCGTGGTA-C----
1 CCTTTTAAGTCCACAACTTCGTGGCACCTTTT
* * * * *
721735 CCTTTAAAGCCCATAATTTCGTGACA-C----
1 CCTTTTAAGTCCACAACTTCGTGGCACCTTTT
* * * *
721762 CCTTTAAAGCCCATAATTTCGTGGCACCCATTTT
1 CCTTTTAAGTCCACAACTTCGTGGCA-CC-TTTT
* *
721796 CCTTTTAAGTCCACAACTCCGTGGCCCCTTGTT
1 CCTTTTAAGTCCACAACTTCGTGGCACCTT-TT
* *
721829 CCTTTTAAGTCCACAACTCCATGGCA-CTTTT
1 CCTTTTAAGTCCACAACTTCGTGGCACCTTTT
* * *
721860 -TTTTTCAAAGCCCACAACTCCGTGGCA-C----
1 CCTTTT--AAGTCCACAACTTCGTGGCACCTTTT
*
721888 CCTTTTAAGTCCACAACTCCGTGGCA-C----
1 CCTTTTAAGTCCACAACTTCGTGGCACCTTTT
* * *
721915 CCTTTAAAGCCCATAA-TTCCGTGGCA-C----
1 CCTTTTAAGTCCACAACTT-CGTGGCACCTTTT
* *
721942 CCTTTAAAGCCCACAA-TTCTGTGGCACCTTTTTT
1 CCTTTTAAGTCCACAACTTC-GTGGCACC--TTTT
* *
721976 CCTTTTAAGTCCATAACTCCGTGGCACCTTGTT
1 CCTTTTAAGTCCACAACTTCGTGGCACCTT-TT
*
722009 CCTTTTAAGTCCACAACTCCGTGGCA-C----
1 CCTTTTAAGTCCACAACTTCGTGGCACCTTTT
* * * *
722036 CCTTTAAAGCCCACAATTTCGTGACACCCTTTTT
1 CCTTTTAAGTCCACAACTTCGTGGCA-CC-TTTT
* *
722070 CCTTTTAAGTCCACAACTCCATGGCACCTTGTT
1 CCTTTTAAGTCCACAACTTCGTGGCACCTT-TT
*
722103 CCTTTTAAGTCCACAACTTCATGGCA-C----
1 CCTTTTAAGTCCACAACTTCGTGGCACCTTTT
* * *
722130 CCTTTAAAG-CTTACAATTTCGTGGCACCCTTTTT
1 CCTTTTAAGTC-CACAACTTCGTGGCA-CC-TTTT
* *** *
722164 TCTCCAAAAGTCCAGAACTTCGTGGCACCTTATT
1 CCT-TTTAAGTCCACAACTTCGTGGCACCTT-TT
* * * *
722198 CCTTTTAAGTCTACAACTGCATGGCACATTTT
1 CCTTTTAAGTCCACAACTTCGTGGCACCTTTT
* * *
722230 TCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTT
1 CCTTTT--AAGTCCACAACTTCGTGGCAC-CTTTT
722265 CC
1 CC
722267 CTCCAAAAGT
Statistics
Matches: 778, Mismatches: 149, Indels: 171
0.71 0.14 0.16
Matches are distributed among these distances:
26 19 0.02
27 227 0.29
28 25 0.03
29 13 0.02
30 9 0.01
31 27 0.03
32 180 0.23
33 116 0.15
34 135 0.17
35 26 0.03
36 1 0.00
ACGTcount: A:0.23, C:0.32, G:0.12, T:0.33
Consensus pattern (32 bp):
CCTTTTAAGTCCACAACTTCGTGGCACCTTTT
Found at i:721415 original size:91 final size:91
Alignment explanation
Indices: 721282--721486 Score: 277
Period size: 91 Copynumber: 2.3 Consensus size: 91
721272 TTCGTGGCAC
* * *
721282 CCTTTTAAGTCCACAACTTCATGGTACCTTTTCCTTTTAAGTCCACAACTCCGTGGCACCTTTTA
1 CCTTTTAAGTCCACAACTTCGTGGCACCTTTTCCTTTTAAGTCCACAACTCCGTGGCACCCTTT-
*
721347 AAAGCCCATAACTCCACGACACCTTTT
65 AAAGCCCACAACTCCACGACACCTTTT
* * * * *
721374 CC-TTTAAGTGCACAACTTCGTGGCACTTTTTTCTTTTAAGTCCATAACTCTGTGGCACCCTTTA
1 CCTTTTAAGTCCACAACTTCGTGGCACCTTTTCCTTTTAAGTCCACAACTCCGTGGCACCCTTTA
** *
721438 AAGCCCACAACTCCGTGGCACCTTTT
66 AAGCCCACAACTCCACGACACCTTTT
*
721464 CCTTTTAAGTCCACAACTCCGTG
1 CCTTTTAAGTCCACAACTTCGTG
721487 ATACCATTTA
Statistics
Matches: 98, Mismatches: 14, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
90 25 0.26
91 71 0.72
92 2 0.02
ACGTcount: A:0.23, C:0.32, G:0.12, T:0.33
Consensus pattern (91 bp):
CCTTTTAAGTCCACAACTTCGTGGCACCTTTTCCTTTTAAGTCCACAACTCCGTGGCACCCTTTA
AAGCCCACAACTCCACGACACCTTTT
Found at i:721447 original size:59 final size:59
Alignment explanation
Indices: 721384--722097 Score: 360
Period size: 59 Copynumber: 11.8 Consensus size: 59
721374 CCTTTAAGTG
* * *
721384 CACAACTTCGTGGCACTTTTTTCTTTTAAGTCCATAACTCTGTGGCACCCTTTAAAGCC
1 CACAACTCCGTGGCACTTTTTCCTTTTAAGTCCACAACTCTGTGGCACCCTTTAAAGCC
* * ** *
721443 CACAACTCCGTGGCACCTTTTCCTTTTAAGTCCACAACTCCGTGATACCATTTAAAGCC
1 CACAACTCCGTGGCACTTTTTCCTTTTAAGTCCACAACTCTGTGGCACCCTTTAAAGCC
* * * * *
721502 CATAATTTCGTGGCACCCTTTTTCCTTTTAAGTCCACAACTC-CTGGCACACTTTAAAGCC
1 CACAACTCCGTGGCA--CTTTTTCCTTTTAAGTCCACAACTCTGTGGCACCCTTTAAAGCC
* * * * *
721562 CATAACTCCGTGGCACATTTTCCTTTTAAGTCCACAACT-TCGTGGCACTTTTTCTTTTTAAGTC
1 CACAACTCCGTGGCACTTTTTCCTTTTAAGTCCACAACTCT-GTGGCAC-----CCTTTAAAGCC
* * * * *
721626 CACAACTCCGTGGCAC-----CCTTTAAAGCCCACAA-TTTCATGGCACCTTTTTTCCTTTTAAG
1 CACAACTCCGTGGCACTTTTTCCTTTTAAGTCCACAACTCT-GTGGCA-C------CCTTTAAAG
*
721685 TC
58 CC
* * * *
721687 CACAACTCTGTGGCACCTTTTCCTTTTAAGTCCACAACTCCGTGGTACCCTTTAAAGCC
1 CACAACTCCGTGGCACTTTTTCCTTTTAAGTCCACAACTCTGTGGCACCCTTTAAAGCC
* * * * * * * * *
721746 CATAATTTCGTGACAC-----CCTTTAAAGCCCATAA-TTTCGTGGCACCCATTTTCCTTTTAAG
1 CACAACTCCGTGGCACTTTTTCCTTTTAAGTCCACAACTCT-GTGGCA--C-----CCTTTAAAG
*
721805 TC
58 CC
* * ** **
721807 CACAACTCCGTGGCCCCTTGTTCCTTTTAAGTCCACAACTCCATGGCACTTTTTTTTTCAAAGCC
1 CACAACTCCGTGG-CACTTTTTCCTTTTAAGTCCACAACTCTGTGGCAC----CCTTT-AAAGCC
*
721872 CACAACTCCGTGGCAC-----CCTTTTAAGTCCACAACTCCGTGGCACCCTTTAAAGCC
1 CACAACTCCGTGGCACTTTTTCCTTTTAAGTCCACAACTCTGTGGCACCCTTTAAAGCC
* * * * * * *
721926 CATAATTCCGTGGCAC-----CCTTTAAAGCCCACAATTCTGTGGCACCTTTTTTCCTTTTAAGT
1 CACAACTCCGTGGCACTTTTTCCTTTTAAGTCCACAACTCTGTGGCA-C------CCTTTAAAGC
721986 C
59 C
* * *
721987 CATAACTCCGTGGCACCTTGTTCCTTTTAAGTCCACAACTCCGTGGCACCCTTTAAAGCC
1 CACAACTCCGTGGCA-CTTTTTCCTTTTAAGTCCACAACTCTGTGGCACCCTTTAAAGCC
* * * **
722047 CACAATTTCGTGACACCCTTTTTCCTTTTAAGTCCACAACTCCATGGCACC
1 CACAACTCCGTGGCA--CTTTTTCCTTTTAAGTCCACAACTCTGTGGCACC
722098 TTGTTCCTTT
Statistics
Matches: 515, Mismatches: 92, Indels: 94
0.73 0.13 0.13
Matches are distributed among these distances:
53 1 0.00
54 60 0.12
55 4 0.01
56 1 0.00
58 24 0.05
59 136 0.26
60 47 0.09
61 128 0.25
62 3 0.01
64 31 0.06
65 19 0.04
66 19 0.04
67 41 0.08
68 1 0.00
ACGTcount: A:0.23, C:0.32, G:0.13, T:0.33
Consensus pattern (59 bp):
CACAACTCCGTGGCACTTTTTCCTTTTAAGTCCACAACTCTGTGGCACCCTTTAAAGCC
Found at i:721572 original size:119 final size:118
Alignment explanation
Indices: 721390--721605 Score: 344
Period size: 119 Copynumber: 1.8 Consensus size: 118
721380 AGTGCACAAC
* * * *
721390 TTCGTGGCACTTTTTTCTTTTAAGTCCATAACTCTGTGGCACCCTTTAAAGCCCACAACTCCGTG
1 TTCGTGGCACTTTTTCCTTTTAAGTCCACAACTCTCTGGCACACTTTAAAGCCCACAACTCCGTG
*
721455 GCACCTTTTCCTTTTAAGTCCACAACTCCGTGATACCATTTAAAGCCCATAAT
66 GCACATTTTCCTTTTAAGTCCACAACTCCGTGATACCATTTAAAGCCCATAAT
*
721508 TTCGTGGCACCCTTTTTCCTTTTAAGTCCACAACTC-CTGGCACACTTTAAAGCCCATAACTCCG
1 TTCGTGGCA--CTTTTTCCTTTTAAGTCCACAACTCTCTGGCACACTTTAAAGCCCACAACTCCG
*
721572 TGGCACATTTTCCTTTTAAGTCCACAACTTCGTG
64 TGGCACATTTTCCTTTTAAGTCCACAACTCCGTG
721606 GCACTTTTTC
Statistics
Matches: 89, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
118 9 0.10
119 57 0.64
120 23 0.26
ACGTcount: A:0.23, C:0.31, G:0.13, T:0.34
Consensus pattern (118 bp):
TTCGTGGCACTTTTTCCTTTTAAGTCCACAACTCTCTGGCACACTTTAAAGCCCACAACTCCGTG
GCACATTTTCCTTTTAAGTCCACAACTCCGTGATACCATTTAAAGCCCATAAT
Found at i:721845 original size:153 final size:147
Alignment explanation
Indices: 721196--722067 Score: 632
Period size: 151 Copynumber: 5.8 Consensus size: 147
721186 CCTTTTTCTT
* *
721196 TTTAAAGCCCACAACTCCGTGGCACCC---TT-C---TAAGTCCACAACACCGTGGCACCTTTTT
1 TTTAAAGCCCACAACTCCGTGGCACCCTTGTTCCTTTTAAGTCCACAACTCCGTGGCACCTTTTC
* * * * * *
721254 CTTTTCAAAGCCCACAACTTCGTGGCACCCTTTTAAGTCCACAACTTCATGGTAC-CTTTTCCTT
66 CTTTT--AAGTCCACAACTCCGTGGCACCCTTTAAAGCCCACAATTTCGT-G-ACAC----CCTT
* * * * *
721318 TTAAGTCCACAACTCCGTGGCACCT
123 TAAAGCCCATAATTCCGTGGCACCC
* ** * * * *
721343 TTTAAAAGCCCATAACTCCACGACA-CCTT-TTCC-TTTAAGTGCACAACTTCGTGGCACTTTTT
1 TTT-AAAGCCCACAACTCCGTGGCACCCTTGTTCCTTTTAAGTCCACAACTCCGTGGCACCTTTT
* * * * * * *
721405 TCTTTTAAGTCCATAACTCTGTGGCACCCTTTAAAGCCCACAACTCCGTGGCACCTTTTCCTTTT
65 CCTTTTAAGTCCACAACTCCGTGGCACCCTTTAAAGCCCACAATTTCGTGACA-C----CCTTTA
* * * ** *
721470 AAGTCCACAACTCCGTGATACCA
125 AAGCCCATAATTCCGTGGCACCC
* * * * *
721493 TTTAAAGCCCATAATTTCGTGGCACCCTTTTTCCTTTTAAGTCCACAACTCC-TGGCA-C----A
1 TTTAAAGCCCACAACTCCGTGGCACCCTTGTTCCTTTTAAGTCCACAACTCCGTGGCACCTTTTC
* * * * * * * *
721552 CTTTAAAGCCCATAACTCCGTGGCACATTTTCCTTTTAAGTCCACAACTTCGTGGCACTTTTTCT
66 CTTTTAAGTCCACAACTCCGTGGCAC-----CCTTTAAAGCCCACAATTTCGTGACAC-----CC
* * * *
721617 TTTTAAGTCCACAACTCCGTGGCACCC
121 TTTAAAGCCCATAATTCCGTGGCACCC
* * * * * *
721644 TTTAAAGCCCACAATTTCATGGCACCTTTTTTCCTTTTAAGTCCACAACTCTGTGGCACCTTTTC
1 TTTAAAGCCCACAACTCCGTGGCACCCTTGTTCCTTTTAAGTCCACAACTCCGTGGCACCTTTTC
* *
721709 CTTTTAAGTCCACAACTCCGTGGTACCCTTTAAAGCCCATAATTTCGTGACACCCTTTAAAGCCC
66 CTTTTAAGTCCACAACTCCGTGGCACCCTTTAAAGCCCACAATTTCGTGACACCCTTTAAAGCCC
*
721774 ATAATTTCGTGGCACCCATTTTCC
131 ATAATTCCGTGGCA--C-----CC
* * *
721798 TTTTAAGTCCACAACTCCGTGGC-CCCTTGTTCCTTTTAAGTCCACAACTCCATGGCA-CTTTT-
1 TTTAAAGCCCACAACTCCGTGGCACCCTTGTTCCTTTTAAGTCCACAACTCCGTGGCACCTTTTC
* * * * * * *
721860 TTTTTCAAAGCCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTAAAGC
66 CTTTT--AAGTCCACAACTCCGTGGCACCCTTTAAAGCCCACAATTTCGTGACACCCTTTAAAGC
721925 CCATAATTCCGTGGCACCC
129 CCATAATTCCGTGGCACCC
* * * * *
721944 TTTAAAGCCCACAATTCTGTGGCACCTTTTTTCCTTTTAAGTCCATAACTCCGTGGCACCTTGTT
1 TTTAAAGCCCACAACTCCGTGGCACCCTTGTTCCTTTTAAGTCCACAACTCCGTGGCACCTT-TT
722009 CCTTTTAAGTCCACAACTCCGTGGCACCCTTTAAAGCCCACAATTTCGTGACACCCTTT
65 CCTTTTAAGTCCACAACTCCGTGGCACCCTTTAAAGCCCACAATTTCGTGACACCCTTT
722068 TTCCTTTTAA
Statistics
Matches: 596, Mismatches: 93, Indels: 71
0.78 0.12 0.09
Matches are distributed among these distances:
146 44 0.07
147 55 0.09
148 68 0.11
149 22 0.04
150 79 0.13
151 114 0.19
152 76 0.13
153 96 0.16
154 20 0.03
157 22 0.04
ACGTcount: A:0.23, C:0.32, G:0.13, T:0.32
Consensus pattern (147 bp):
TTTAAAGCCCACAACTCCGTGGCACCCTTGTTCCTTTTAAGTCCACAACTCCGTGGCACCTTTTC
CTTTTAAGTCCACAACTCCGTGGCACCCTTTAAAGCCCACAATTTCGTGACACCCTTTAAAGCCC
ATAATTCCGTGGCACCC
Found at i:721910 original size:180 final size:181
Alignment explanation
Indices: 721432--722258 Score: 697
Period size: 180 Copynumber: 4.5 Consensus size: 181
721422 TCTGTGGCAC
* * * ***
721432 CCTTTAAAGCCCACAACTCCGTGGCACCTT-TTCCTTTTAAGTCCACAACTCCGT-G-A--TACC
1 CCTTTTAAGTCCACAACTCCGTGGCACCTTGTTCCTTTTAAGTCCACAACTCCATGGCACTTTTT
* * * * *
721492 ATTTAAAGCCCATAATTTCGTGGCACCCTTTTTCCTTTTAAGTCCACAACTCC-TGGCACACTTT
66 TTTTAAAGCCCACAACTCCGTGGCA-CC----TCCTTTTAAGTCCACAACTCCGTGGCACCCTTT
* * * *
721556 AAAGCCCATAACTCCGTGGCACATTTTCCTTTTAAGTCCACAACTTCGTGGCA--CTTTTT
126 AAAGCCCATAACTCCGT-G-ACA---CCCTTTAAAGCCCACAATTTCGTGGCACCCTTTTT
* * * * *
721615 CTTTTTAAGTCCACAACTCCGTGGCA-C-----CCTTTAAAGCCCACAATTTCATGGCACCTTTT
1 CCTTTTAAGTCCACAACTCCGTGGCACCTTGTTCCTTTTAAGTCCACAACTCCATGGCA-CTTTT
* * * *
721674 TTCCTTTTAAGTCCACAACTCTGTGGCACCTTTTCCTTTTAAGTCCACAACTCCGTGGTACCCTT
65 TT--TTTAAAGCCCACAACTCCGTGGCACC---TCCTTTTAAGTCCACAACTCCGTGGCACCCTT
* * * *
721739 TAAAGCCCATAATTTCGTGACACCCTTTAAAGCCCATAATTTCGTGGCACCCATTTT
125 TAAAGCCCATAACTCCGTGACACCCTTTAAAGCCCACAATTTCGTGGCACCCTTTTT
*
721796 CCTTTTAAGTCCACAACTCCGTGGCCCCTTGTTCCTTTTAAGTCCACAACTCCATGGCACTTTTT
1 CCTTTTAAGTCCACAACTCCGTGGCACCTTGTTCCTTTTAAGTCCACAACTCCATGGCACTTTTT
721861 TTTTCAAAGCCCACAACTCCGTGGCA-C-CCTTTTAAGTCCACAACTCCGTGGCACCCTTTAAAG
66 TTTT-AAAGCCCACAACTCCGTGGCACCTCCTTTTAAGTCCACAACTCCGTGGCACCCTTTAAAG
* * *
721924 CCCATAATTCCGTGGCACCCTTTAAAGCCCACAA-TTCTGTGGCACCTTTTTT
130 CCCATAACTCCGTGACACCCTTTAAAGCCCACAATTTC-GTGGCACCCTTTTT
* * *
721976 CCTTTTAAGTCCATAACTCCGTGGCACCTTGTTCCTTTTAAGTCCACAACTCCGTGGCAC----C
1 CCTTTTAAGTCCACAACTCCGTGGCACCTTGTTCCTTTTAAGTCCACAACTCCATGGCACTTTTT
* * * * *
722037 CTTTAAAGCCCACAATTTCGTGACACCCTTTTTCCTTTTAAGTCCACAACTCCATGGCACCTTGT
66 TTTTAAAGCCCACAACTCCGTGGCA-CC----TCCTTTTAAGTCCACAACTCCGTGGCA-C----
* * * * * * **
722102 TCCTTTTAAGTCCACAACTTCATGGCACCCTTTAAAGCTTACAATTTCGTGGCACCCTTTTT
121 -CCTTTAAAGCCCATAACTCCGTGACACCCTTTAAAGCCCACAATTTCGTGGCACCCTTTTT
* *** * * * * *
722164 TCTCCAAAAGTCCAGAACTTCGTGGCACCTTATTCCTTTTAAGTCTACAACTGCATGGCACATTT
1 CCT-TTTAAGTCCACAACTCCGTGGCACCTTGTTCCTTTTAAGTCCACAACTCCATGGCAC-TTT
722229 TTCTTTTCAAAGCCCACAACTCCGTGGCAC
64 TT-TTTT-AAAGCCCACAACTCCGTGGCAC
722259 TCTTTTCCCT
Statistics
Matches: 528, Mismatches: 76, Indels: 68
0.79 0.11 0.10
Matches are distributed among these distances:
175 18 0.03
176 3 0.01
177 1 0.00
178 17 0.03
179 26 0.05
180 136 0.26
181 29 0.05
182 30 0.06
183 50 0.09
184 30 0.06
185 36 0.07
186 7 0.01
187 22 0.04
188 50 0.09
189 51 0.10
195 4 0.01
196 18 0.03
ACGTcount: A:0.23, C:0.32, G:0.13, T:0.33
Consensus pattern (181 bp):
CCTTTTAAGTCCACAACTCCGTGGCACCTTGTTCCTTTTAAGTCCACAACTCCATGGCACTTTTT
TTTTAAAGCCCACAACTCCGTGGCACCTCCTTTTAAGTCCACAACTCCGTGGCACCCTTTAAAGC
CCATAACTCCGTGACACCCTTTAAAGCCCACAATTTCGTGGCACCCTTTTT
Found at i:722047 original size:94 final size:93
Alignment explanation
Indices: 721696--722224 Score: 495
Period size: 94 Copynumber: 5.8 Consensus size: 93
721686 CCACAACTCT
* * * * * *
721696 GTGGCACC-TTTTCCTTTTAAGTCCACAACTCCGTGGTA-C-----CCTTTAAAGCCCATAATTT
1 GTGGCACCTTTTTCCTTTTAAGTCCACAACTCCGTGGCACCTTGTTCCTTTTAAGTCCACAACTC
* * *
721754 CGTGACACCCTTTAAAGCCCATAATTTC
66 CATGGCACCCTTTAAAGCCCACAATTTC
* *
721782 GTGGCACCCATTTTCCTTTTAAGTCCACAACTCCGTGGCCCCTTGTTCCTTTTAAGTCCACAACT
1 GTGGCA-CCTTTTTCCTTTTAAGTCCACAACTCCGTGGCACCTTGTTCCTTTTAAGTCCACAACT
** * *
721847 CCATGGCACTTTTTTTTTCAAAGCCCACAACTCC
65 CCATGGCAC----CCTTT-AAAGCCCACAATTTC
* * * *
721881 GTGGCA-C-----CCTTTTAAGTCCACAACTCCGTGGCA-C-----CCTTTAAAGCCCATAATTC
1 GTGGCACCTTTTTCCTTTTAAGTCCACAACTCCGTGGCACCTTGTTCCTTTTAAGTCCACAACTC
*
721934 CGTGGCACCCTTTAAAGCCCACAA-TTC
66 CATGGCACCCTTTAAAGCCCACAATTTC
*
721961 TGTGGCACCTTTTTTCCTTTTAAGTCCATAACTCCGTGGCACCTTGTTCCTTTTAAGTCCACAAC
1 -GTGGCACC-TTTTTCCTTTTAAGTCCACAACTCCGTGGCACCTTGTTCCTTTTAAGTCCACAAC
*
722026 TCCGTGGCACCCTTTAAAGCCCACAATTTC
64 TCCATGGCACCCTTTAAAGCCCACAATTTC
* *
722056 GTGACACCCTTTTTCCTTTTAAGTCCACAACTCCATGGCACCTTGTTCCTTTTAAGTCCACAACT
1 GTGGCA-CCTTTTTCCTTTTAAGTCCACAACTCCGTGGCACCTTGTTCCTTTTAAGTCCACAACT
* **
722121 TCATGGCACCCTTTAAAGCTTACAATTTC
65 CCATGGCACCCTTTAAAGCCCACAATTTC
* *** * * * *
722150 GTGGCACCCTTTTTTCTCCAAAAGTCCAGAACTTCGTGGCACCTTATTCCTTTTAAGTCTACAAC
1 GTGGCA-CCTTTTTCCT-TTTAAGTCCACAACTCCGTGGCACCTTGTTCCTTTTAAGTCCACAAC
*
722215 TGCATGGCAC
64 TCCATGGCAC
722225 ATTTTTCTTT
Statistics
Matches: 367, Mismatches: 46, Indels: 51
0.79 0.10 0.11
Matches are distributed among these distances:
80 2 0.01
81 17 0.05
82 4 0.01
86 28 0.08
87 2 0.01
88 53 0.14
89 2 0.01
91 1 0.00
92 25 0.07
94 158 0.43
95 53 0.14
97 1 0.00
98 3 0.01
99 18 0.05
ACGTcount: A:0.22, C:0.32, G:0.13, T:0.32
Consensus pattern (93 bp):
GTGGCACCTTTTTCCTTTTAAGTCCACAACTCCGTGGCACCTTGTTCCTTTTAAGTCCACAACTC
CATGGCACCCTTTAAAGCCCACAATTTC
Found at i:722509 original size:32 final size:31
Alignment explanation
Indices: 722472--722684 Score: 275
Period size: 32 Copynumber: 6.7 Consensus size: 31
722462 AACTTTCTTC
*
722472 AAAGCCCACATAAGTTGGTGGCAACCCTTTCT
1 AAAGCCCACACAAGTTGGTGGCAA-CCTTTCT
*
722504 AAAGCCCACACAAGTTGGTGGCAACCTCTTCA
1 AAAGCCCACACAAGTTGGTGGCAACCT-TTCT
722536 AAAGCCCACACAAGTTGGTGGCAACCCTTTCT
1 AAAGCCCACACAAGTTGGTGGCAA-CCTTTCT
* * *
722568 AAAGTCCACGCAAGTTGGTGGCAACCTTCTTT
1 AAAGCCCACACAAGTTGGTGGCAACCTT-TCT
* * *
722600 AAAG-CCACACAAGTTGGTGGTAACTTTTTT
1 AAAGCCCACACAAGTTGGTGGCAACCTTTCT
* * *
722630 AAAGCTCACACAAGTTGGTGACAACCCTTTCA
1 AAAGCCCACACAAGTTGGTGGCAA-CCTTTCT
722662 AAAGCCCACACAAGTTGGTGGCA
1 AAAGCCCACACAAGTTGGTGGCA
722685 TTTCCTTCTA
Statistics
Matches: 159, Mismatches: 17, Indels: 10
0.85 0.09 0.05
Matches are distributed among these distances:
30 7 0.04
31 43 0.27
32 106 0.67
33 3 0.02
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (31 bp):
AAAGCCCACACAAGTTGGTGGCAACCTTTCT
Found at i:722710 original size:94 final size:93
Alignment explanation
Indices: 722472--722684 Score: 284
Period size: 94 Copynumber: 2.2 Consensus size: 93
722462 AACTTTCTTC
* * * **
722472 AAAGCCCACATAAGTTGGTGGCAACCCTT-TCTAAAGCCCACACAAGTTGGTGGCAACCTCTTCA
1 AAAGCCCACACAAGTTGGTGGCAA-CCTTCT-TAAAG-CCACACAAGTTGGTGGTAA-CTTTTTT
* *
722536 AAAGCCCACACAAGTTGGTGGCAACCCTTTCT
62 AAAGCCCACACAAGTTGGTGACAACCCTTTCA
* *
722568 AAAGTCCACGCAAGTTGGTGGCAACCTTCTTTAAAGCCACACAAGTTGGTGGTAACTTTTTTAAA
1 AAAGCCCACACAAGTTGGTGGCAACCTTC-TTAAAGCCACACAAGTTGGTGGTAACTTTTTTAAA
*
722633 GCTCACACAAGTTGGTGACAACCCTTTCA
65 GCCCACACAAGTTGGTGACAACCCTTTCA
722662 AAAGCCCACACAAGTTGGTGGCA
1 AAAGCCCACACAAGTTGGTGGCA
722685 TTTCCTTCTA
Statistics
Matches: 103, Mismatches: 12, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
94 54 0.52
95 22 0.21
96 26 0.25
97 1 0.01
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (93 bp):
AAAGCCCACACAAGTTGGTGGCAACCTTCTTAAAGCCACACAAGTTGGTGGTAACTTTTTTAAAG
CCCACACAAGTTGGTGACAACCCTTTCA
Found at i:722751 original size:43 final size:43
Alignment explanation
Indices: 722688--723119 Score: 288
Period size: 43 Copynumber: 9.1 Consensus size: 43
722678 GGTGGCATTT
* * *
722688 CCTTCTAAGCCCAATGTCGTTGGCCTTGAATTAGCACATTGGCA
1 CCTT-TAAGTCCAATGTCGTTGGCCTTGAATCAGCATATTGGCA
* * *
722732 CCTTTAAGTCCAATATCGTTAGCCTTGAATCAGCATATTGGCGC
1 CCTTTAAGTCCAATGTCGTTGGCCTTGAATCAGCATATTGGC-A
* *
722776 CTTTGTCATATTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCA
1 C-----C---TTTAAGTCCAATGTCGTTGGCCTTGAATCAGCATATTGGCA
* * * *
722827 CTTTTAAGTCCACTATCGTTGGCCTTGAATCAACATATTGGCACCTTCA
1 CCTTTAAGTCCAATGTCGTTGGCCTTGAATCAGCATATTGG------CA
* *
722876 CCATCTTTAAGTCCAATGTCGCTGGCATTGAATCAGCATATTGGCA
1 -C--CTTTAAGTCCAATGTCGTTGGCCTTGAATCAGCATATTGGCA
* *
722922 CTTTCATCTTTAAGTCTAATGTCGTTGGCCTTGAATCAGCACATTGGCACCTTCA
1 ----C--CTTTAAGTCCAATGTCGTTGGCCTTGAATCAGCATATTGG------CA
*
722977 CCTTTAAGTCCAATATCGTTGGCCTTGAATCAGCATATTGGTGCCTTTGTCA
1 CCTTTAAGTCCAATGTCGTTGGCCTTGAATCAGCATA-T--TG-----G-CA
* * **
723029 TCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACCTTGGCA
1 CCTTTAAGTCCAATGTCGTTGGCCTTGAATCAGCATATTGGCA
* * *
723072 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCG
1 CCTTTAAGTCCAATGTCGTTGGCCTTGAATCAGCATATTGGCA
723115 CCTTT
1 CCTTT
723120 GTCATCCTTC
Statistics
Matches: 312, Mismatches: 41, Indels: 71
0.74 0.10 0.17
Matches are distributed among these distances:
43 112 0.36
44 6 0.02
46 2 0.01
49 77 0.25
50 2 0.01
51 3 0.01
52 107 0.34
55 2 0.01
57 1 0.00
ACGTcount: A:0.23, C:0.25, G:0.19, T:0.33
Consensus pattern (43 bp):
CCTTTAAGTCCAATGTCGTTGGCCTTGAATCAGCATATTGGCA
Found at i:722945 original size:49 final size:49
Alignment explanation
Indices: 722693--723478 Score: 588
Period size: 52 Copynumber: 15.9 Consensus size: 49
722683 CATTTCCTTC
* * * *
722693 TAAGCCCAATGTCGTTGGCCTTGAATTAGCACATTGGCA----C--CTT
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCATATTGGCACTTTCATCTT
* * * * *
722736 TAAGTCCAATATCGTTAGCCTTGAATCAGCATATTGGCGCCTTTGTCATATT
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCATATTGGC-AC-TT-TCATCTT
*
722788 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCA----C-T-TT
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCATATTGGCACTTTCATCTT
* * * * *
722831 TAAGTCCACTATCGTTGGCCTTGAATCAACATATTGGCACCTTCACCATCTT
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCATATTGGCA-CTT--TCATCTT
*
722883 TAAGTCCAATGTCGCTGGCATTGAATCAGCATATTGGCACTTTCATCTT
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCATATTGGCACTTTCATCTT
* * * * *
722932 TAAGTCTAATGTCGTTGGCCTTGAATCAGCACATTGGCACCTTCACCTT
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCATATTGGCACTTTCATCTT
* *
722981 TAAGTCCAATATCGTTGGCCTTGAATCAGCATATTGGTGC-CTTTGTCATCTT
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCATATT-G-GCAC-TT-TCATCTT
**
723033 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACCTTGGCA----C--CTT
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCATATTGGCACTTTCATCTT
* *
723076 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATCCTT
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCATATTGGC-AC-TT-TCAT-CTT
** * * * *
723129 CTAAACCCAATGTCGCTAGCTTTAAATCAGCATATTGGCACCTTCACCATCTT
1 -TAAGTCCAATGTCGCTGGCCTTGAATCAGCATATTGGCA-CTT--TCATCTT
* * *
723182 TAAGTCCAATGTCGTTGGCCTTGAATTAGCACATTGGCACTTTCATCTT
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCATATTGGCACTTTCATCTT
* * * * *
723231 TAAGTCTAATGTTGCTAGCCTTGAATCAGCACATTGGCACCTTCATCTT
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCATATTGGCACTTTCATCTT
* * * *
723280 TAAGTCCGATATCGCTAGCCTTGAATCAGCATATTGGCATCTTTAACAT-TCC
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCATATTGGCA-CTTT--CATCT-T
** * * * * *
723332 TAAACCCAATGTCACGGGCCTTGAATTAGCACATTAGCATTCTTCTCAT-TT
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCATATTGGCA--CTT-TCATCTT
** * * * ** *
723383 TCAAGTTTAATGTTGCTGGCCGTGAATCAGCACATTGATATTCTTCGCATCTT
1 T-AAGTCCAATGTCGCTGGCCTTGAATCAGCATATTGGCA--CTT-TCATCTT
* * **
723436 TAAGCCCAATATCGCTGGCCTTGAATCAATATATTGGCACTTT
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCATATTGGCACTTT
723479 TATCATCCTT
Statistics
Matches: 590, Mismatches: 109, Indels: 82
0.76 0.14 0.10
Matches are distributed among these distances:
43 107 0.18
44 1 0.00
45 2 0.00
49 164 0.28
50 13 0.02
51 13 0.02
52 238 0.40
53 15 0.03
54 37 0.06
ACGTcount: A:0.24, C:0.25, G:0.17, T:0.34
Consensus pattern (49 bp):
TAAGTCCAATGTCGCTGGCCTTGAATCAGCATATTGGCACTTTCATCTT
Found at i:723030 original size:101 final size:99
Alignment explanation
Indices: 722733--723316 Score: 572
Period size: 95 Copynumber: 5.9 Consensus size: 99
722723 ACATTGGCAC
* * * * * **
722733 CTTTAAGTCCAATATCGTTAGCCTTGAATCAGCATATTGGCGCCTTTGTCATATTTAAGTCCAAT
1 CTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACC--T-TCACCTTTAAGTCCAAT
* *
722798 GTCGCTGGCCTTGAATCAGCACATT-GGCA----C-T
63 ATCGCTGGCCTTGAATCAGCATATTGGGCACTTTCAT
* * * * *
722829 -TTTAAGTCCACTATCGTTGGCCTTGAATCAACATATTGGCACCTTCACCATCTTTAAGTCCAAT
1 CTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCA-C--CTTTAAGTCCAAT
* *
722893 GTCGCTGGCATTGAATCAGCATATT-GGCACTTTCAT
63 ATCGCTGGCCTTGAATCAGCATATTGGGCACTTTCAT
* *
722929 CTTTAAGTCTAATGTCGTTGGCCTTGAATCAGCACATTGGCACCTTCACCTTTAAGTCCAATATC
1 CTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCACCTTTAAGTCCAATATC
*
722994 GTTGGCCTTGAATCAGCATATTGGTGC-CTTTGTCAT
66 GCTGGCCTTGAATCAGCATATTGG-GCAC-TT-TCAT
*
723030 CTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACCTTGG------CACCTTTAAGTCCAATATC
1 CTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCACCTTTAAGTCCAATATC
723089 GCTGGCCTTGAATCAGCATATTGGCGC-CTTTGTCAT
66 GCTGGCCTTGAATCAGCATATTGG-GCAC-TT-TCAT
** * * * *
723125 CCTTCTAAACCCAATGTCGCTAGCTTTAAATCAGCATATTGGCACCTTCACCATCTTTAAGTCCA
1 -CTT-TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCA-C--CTTTAAGTCCA
* * * *
723190 ATGTCGTTGGCCTTGAATTAGCACATT-GGCACTTTCAT
61 ATATCGCTGGCCTTGAATCAGCATATTGGGCACTTTCAT
* * * * *
723228 CTTTAAGTCTAATGTTGCTAGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCGATATC
1 CTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCACCTTTAAGTCCAATATC
*
723293 GCTAGCCTTGAATCAGCATATTGG
66 GCTGGCCTTGAATCAGCATATTGG
723317 CATCTTTAAC
Statistics
Matches: 416, Mismatches: 46, Indels: 49
0.81 0.09 0.10
Matches are distributed among these distances:
92 3 0.01
93 1 0.00
95 131 0.31
96 3 0.01
97 30 0.07
98 67 0.16
99 4 0.01
100 6 0.01
101 121 0.29
102 3 0.01
103 6 0.01
104 5 0.01
105 2 0.00
106 34 0.08
ACGTcount: A:0.24, C:0.25, G:0.18, T:0.34
Consensus pattern (99 bp):
CTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCACCTTTAAGTCCAATATC
GCTGGCCTTGAATCAGCATATTGGGCACTTTCAT
Found at i:723343 original size:101 final size:99
Alignment explanation
Indices: 722741--723419 Score: 471
Period size: 101 Copynumber: 6.8 Consensus size: 99
722731 ACCTTTAAGT
* * * * * * *
722741 CCAATATCGTTAGCCTTGAATCAGCATATTGGCGCCTTTGTCATATTTAAGTCCAATGTCGCTGG
1 CCAATGTCGCTAGCCTTGAATCAGCACATTGGCACC-TT-CCATCTTTAAGTCCAATATCGCTGG
* **
722806 CCTTGAATCAGCACATTGGCAC--T--TT--TAAGT
64 CCTTGAATCAGCATATTGGCACTTTCATTCCTAAAC
* * * * * * *
722836 CCACTATCGTTGGCCTTGAATCAACATATTGGCACCTTCACCATCTTTAAGTCCAATGTCGCTGG
1 CCAATGTCGCTAGCCTTGAATCAGCACATTGGCACCTT--CCATCTTTAAGTCCAATATCGCTGG
* * **
722901 CATTGAATCAGCATATTGGCACTTTCA-TCTTTAAGT
64 CCTTGAATCAGCATATTGGCACTTTCATTC-CTAAAC
* * * * *
722937 CTAATGTCGTTGGCCTTGAATCAGCACATTGGCACCTT-CACCTTTAAGTCCAATATCGTTGGCC
1 CCAATGTCGCTAGCCTTGAATCAGCACATTGGCACCTTCCATCTTTAAGTCCAATATCGCTGGCC
* **
723001 TTGAATCAGCATATTGGTGC-CTTTGTCA-TCTTTAAGT
66 TTGAATCAGCATATT-G-GCAC-TT-TCATTC-CTAAAC
* *
723038 CCAATGTCGCTGGCCTTGAATCAGCACCTTGGCA-----C--CTTTAAGTCCAATATCGCTGGCC
1 CCAATGTCGCTAGCCTTGAATCAGCACATTGGCACCTTCCATCTTTAAGTCCAATATCGCTGGCC
* *
723096 TTGAATCAGCATATTGGCGCCTTTGTCATCCTTCTAAAC
66 TTGAATCAGCATATTGGC-AC-TT-TCAT--TCCTAAAC
* * * * *
723135 CCAATGTCGCTAGCTTTAAATCAGCATATTGGCACCTTCACCATCTTTAAGTCCAATGTCGTTGG
1 CCAATGTCGCTAGCCTTGAATCAGCACATTGGCACCTT--CCATCTTTAAGTCCAATATCGCTGG
* * * **
723200 CCTTGAATTAGCACATTGGCACTTTCA-TCTTTAAGT
64 CCTTGAATCAGCATATTGGCACTTTCATTC-CTAAAC
* * * *
723236 CTAATGTTGCTAGCCTTGAATCAGCACATTGGCACCTT-CATCTTTAAGTCCGATATCGCTAGCC
1 CCAATGTCGCTAGCCTTGAATCAGCACATTGGCACCTTCCATCTTTAAGTCCAATATCGCTGGCC
723300 TTGAATCAGCATATTGGCATCTTTAACATTCCTAAAC
66 TTGAATCAGCATATTGGCA-CTTT--CATTCCTAAAC
* ** * * * ** * *
723337 CCAATGTCACGGGCCTTGAATTAGCACATTAGCATTCTTCTCAT-TTTCAAGTTTAATGTTGCTG
1 CCAATGTCGCTAGCCTTGAATCAGCACATTGGCA-CCTTC-CATCTTT-AAGTCCAATATCGCTG
* *
723401 GCCGTGAATCAGCACATTG
63 GCCTTGAATCAGCATATTG
723420 ATATTCTTCG
Statistics
Matches: 479, Mismatches: 70, Indels: 61
0.79 0.11 0.10
Matches are distributed among these distances:
93 2 0.00
94 3 0.01
95 120 0.25
97 34 0.07
98 78 0.16
99 6 0.01
100 5 0.01
101 149 0.31
102 5 0.01
103 6 0.01
104 33 0.07
105 1 0.00
106 37 0.08
ACGTcount: A:0.24, C:0.25, G:0.17, T:0.33
Consensus pattern (99 bp):
CCAATGTCGCTAGCCTTGAATCAGCACATTGGCACCTTCCATCTTTAAGTCCAATATCGCTGGCC
TTGAATCAGCATATTGGCACTTTCATTCCTAAAC
Found at i:724211 original size:20 final size:19
Alignment explanation
Indices: 724164--724217 Score: 67
Period size: 20 Copynumber: 2.8 Consensus size: 19
724154 ATTTTTACAA
724164 TTTGTATCGATACA-TAAG
1 TTTGTATCGATACATTAAG
724182 TTTGGTATCGATACATTAA-
1 TTT-GTATCGATACATTAAG
724201 TCATTGTATCGATACAT
1 T--TTGTATCGATACAT
724218 CTATGTATTT
Statistics
Matches: 32, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
18 3 0.09
19 12 0.38
20 15 0.47
21 2 0.06
ACGTcount: A:0.31, C:0.13, G:0.15, T:0.41
Consensus pattern (19 bp):
TTTGTATCGATACATTAAG
Found at i:724260 original size:20 final size:20
Alignment explanation
Indices: 724235--724306 Score: 117
Period size: 20 Copynumber: 3.6 Consensus size: 20
724225 TTTTACCTAG
724235 ATGTATCGATACATGATTCA
1 ATGTATCGATACATGATTCA
*
724255 ATGTATTGATACATGATTCA
1 ATGTATCGATACATGATTCA
* *
724275 ATGTATCAATACATTATTCA
1 ATGTATCGATACATGATTCA
724295 ATGTATCGATAC
1 ATGTATCGATAC
724307 TTGCAGGCAA
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 47 1.00
ACGTcount: A:0.36, C:0.14, G:0.12, T:0.38
Consensus pattern (20 bp):
ATGTATCGATACATGATTCA
Found at i:726830 original size:111 final size:112
Alignment explanation
Indices: 726626--726830 Score: 295
Period size: 111 Copynumber: 1.8 Consensus size: 112
726616 AATGCTTTGG
* * *
726626 TTGGCTCAAAAATTTCAAAACTGATAGAATACATGCCTTATTTTCCTAGGCATGAATGGATCAAG
1 TTGGCTCAAAAATTTCAAAACTAATAGAATACATGCCTTATTCTCCTAGGCACGAATGGATCAAG
* * *
726691 TCGCATAAAGCATGAATTTGTTTGAAAATTAAACAAATTTGATATTA
66 TCGCATAAAACATGAATTTCTTTAAAAATTAAACAAATTTGATATTA
* * *
726738 TTGGCTCAAAAATTTCAAAACTAATAGGATACATGCC-TATTCTCCTAGGCACGAATGGATTAGG
1 TTGGCTCAAAAATTTCAAAACTAATAGAATACATGCCTTATTCTCCTAGGCACGAATGGATCAAG
* * *
726802 TTGTATAAAATATGAATTTCTTTAAAAAT
66 TCGCATAAAACATGAATTTCTTTAAAAAT
726831 CGGACAAAAT
Statistics
Matches: 81, Mismatches: 12, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
111 46 0.57
112 35 0.43
ACGTcount: A:0.38, C:0.14, G:0.15, T:0.33
Consensus pattern (112 bp):
TTGGCTCAAAAATTTCAAAACTAATAGAATACATGCCTTATTCTCCTAGGCACGAATGGATCAAG
TCGCATAAAACATGAATTTCTTTAAAAATTAAACAAATTTGATATTA
Found at i:729115 original size:21 final size:21
Alignment explanation
Indices: 729089--729139 Score: 75
Period size: 21 Copynumber: 2.4 Consensus size: 21
729079 TGAATGATTA
*
729089 TGTTTGTAGACATTTTTGACT
1 TGTTTGGAGACATTTTTGACT
* *
729110 TGTTTGGAGCCGTTTTTGACT
1 TGTTTGGAGACATTTTTGACT
729131 TGTTTGGAG
1 TGTTTGGAG
729140 CTTGTTTCCA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.14, C:0.10, G:0.27, T:0.49
Consensus pattern (21 bp):
TGTTTGGAGACATTTTTGACT
Found at i:729140 original size:21 final size:21
Alignment explanation
Indices: 729101--729140 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
729091 TTTGTAGACA
729101 TTTTTGACTTGTTTGGAGCCG
1 TTTTTGACTTGTTTGGAGCCG
729122 TTTTTGACTTGTTTGGAGC
1 TTTTTGACTTGTTTGGAGC
729141 TTGTTTCCAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.10, C:0.12, G:0.28, T:0.50
Consensus pattern (21 bp):
TTTTTGACTTGTTTGGAGCCG
Found at i:734380 original size:26 final size:23
Alignment explanation
Indices: 734329--734381 Score: 61
Period size: 23 Copynumber: 2.2 Consensus size: 23
734319 TGTTTCTGAG
*
734329 TTCAGCAGCTTAATTGCAGTTGT
1 TTCAGCAGCTTAATTGCAGCTGT
*
734352 TTCAGCCGCTTAATTACAGCAGCTGT
1 TTCAGCAGCTTAATT---GCAGCTGT
734378 TTCA
1 TTCA
734382 ATTTTTATTT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
23 14 0.56
26 11 0.44
ACGTcount: A:0.23, C:0.23, G:0.19, T:0.36
Consensus pattern (23 bp):
TTCAGCAGCTTAATTGCAGCTGT
Found at i:734464 original size:30 final size:30
Alignment explanation
Indices: 734429--734495 Score: 116
Period size: 30 Copynumber: 2.2 Consensus size: 30
734419 TTCTTTGTTG
734429 CTTGATTCATTTTTGTCTTCATTACAGCAT
1 CTTGATTCATTTTTGTCTTCATTACAGCAT
* *
734459 CTTGATTCGTTTTTGTCTTCATTGCAGCAT
1 CTTGATTCATTTTTGTCTTCATTACAGCAT
734489 CTTGATT
1 CTTGATT
734496 ACTTTAATTA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 35 1.00
ACGTcount: A:0.16, C:0.19, G:0.13, T:0.51
Consensus pattern (30 bp):
CTTGATTCATTTTTGTCTTCATTACAGCAT
Found at i:734605 original size:12 final size:12
Alignment explanation
Indices: 734567--734608 Score: 66
Period size: 12 Copynumber: 3.3 Consensus size: 12
734557 ACTCTGCCGT
734567 TTGCTTTCTTCA
1 TTGCTTTCTTCA
734579 TTGCATTTGCTTCA
1 TTGC-TTT-CTTCA
734593 TTGCTTTCTTCA
1 TTGCTTTCTTCA
734605 TTGC
1 TTGC
734609 ACCTCGGCTG
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
12 13 0.46
13 6 0.21
14 9 0.32
ACGTcount: A:0.10, C:0.24, G:0.12, T:0.55
Consensus pattern (12 bp):
TTGCTTTCTTCA
Found at i:734944 original size:8 final size:8
Alignment explanation
Indices: 734893--734972 Score: 57
Period size: 8 Copynumber: 10.8 Consensus size: 8
734883 TTTTCCTTTT
734893 TTTAATTA
1 TTTAATTA
*
734901 ATTAATTA
1 TTTAATTA
*
734909 --TCATTA
1 TTTAATTA
734915 TTT--TTA
1 TTTAATTA
734921 TTTACA-TA
1 TTTA-ATTA
*
734929 TTT-TTTA
1 TTTAATTA
734936 TTTAATTA
1 TTTAATTA
734944 TTTAATTA
1 TTTAATTA
734952 TTTAATT-
1 TTTAATTA
* *
734959 TTTATTTT
1 TTTAATTA
734967 TTTAAT
1 TTTAAT
734973 GTCAAATAAA
Statistics
Matches: 58, Mismatches: 6, Indels: 16
0.73 0.08 0.20
Matches are distributed among these distances:
6 11 0.19
7 11 0.19
8 36 0.62
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.66
Consensus pattern (8 bp):
TTTAATTA
Found at i:734945 original size:15 final size:16
Alignment explanation
Indices: 734917--734972 Score: 64
Period size: 15 Copynumber: 3.6 Consensus size: 16
734907 TATCATTATT
734917 TTTATTTACA-TATTT-
1 TTTATTTA-ATTATTTA
734932 TTTATTTAATTATTTA
1 TTTATTTAATTATTTA
*
734948 ATTATTTAATT-TTTA
1 TTTATTTAATTATTTA
*
734963 TTTTTTTAAT
1 TTTATTTAAT
734973 GTCAAATAAA
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
14 1 0.03
15 25 0.69
16 10 0.28
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.70
Consensus pattern (16 bp):
TTTATTTAATTATTTA
Found at i:735528 original size:17 final size:18
Alignment explanation
Indices: 735506--735546 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
735496 GAGACATTAC
735506 TTTAATTCTA-TAAAAAT
1 TTTAATTCTATTAAAAAT
*
735523 TTTAATTTTATTAAAAAT
1 TTTAATTCTATTAAAAAT
*
735541 ATTAAT
1 TTTAAT
735547 AAAAAGATCA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 9 0.43
18 12 0.57
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.51
Consensus pattern (18 bp):
TTTAATTCTATTAAAAAT
Found at i:739167 original size:11 final size:10
Alignment explanation
Indices: 739153--739214 Score: 54
Period size: 10 Copynumber: 6.1 Consensus size: 10
739143 GTCTTAAAAG
*
739153 TTTTCATTTA
1 TTTTTATTTA
*
739163 TTTTTTATTAA
1 -TTTTTATTTA
*
739174 TTTTTAGTTA
1 TTTTTATTTA
*
739184 TTTTTAAATTA
1 TTTTT-ATTTA
*
739195 GTTTTATTTA
1 TTTTTATTTA
739205 -TTTTATTTA
1 TTTTTATTTA
739214 T
1 T
739215 GATTAAATTG
Statistics
Matches: 42, Mismatches: 7, Indels: 5
0.78 0.13 0.09
Matches are distributed among these distances:
9 9 0.21
10 17 0.40
11 16 0.38
ACGTcount: A:0.24, C:0.02, G:0.03, T:0.71
Consensus pattern (10 bp):
TTTTTATTTA
Found at i:739177 original size:21 final size:21
Alignment explanation
Indices: 739153--739208 Score: 60
Period size: 21 Copynumber: 2.6 Consensus size: 21
739143 GTCTTAAAAG
*
739153 TTTTCATTTATTTTT-TATTAA
1 TTTT-ATTTATTTTTAAATTAA
* *
739174 TTTTTAGTTATTTTTAAATTAG
1 -TTTTATTTATTTTTAAATTAA
739196 TTTTATTTATTTT
1 TTTTATTTATTTT
739209 ATTTATGATT
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
21 21 0.72
22 8 0.28
ACGTcount: A:0.23, C:0.02, G:0.04, T:0.71
Consensus pattern (21 bp):
TTTTATTTATTTTTAAATTAA
Found at i:742531 original size:231 final size:231
Alignment explanation
Indices: 742128--742593 Score: 815
Period size: 231 Copynumber: 2.0 Consensus size: 231
742118 AAATGAAAGC
*
742128 ATGATGATTAACAGAAGACAACATAGTATCATAAGTCAAACAATTAGTTATACAATAGATACATG
1 ATGATGATTAACAGAAGACAACATAGTATCATAAGTCAAACAATTAGTTATACAATAGACACATG
* *
742193 AGAACTTTTTCATAAACACTTAATTGAAATACTAAATGGAGTTCACATAGCATACCATATGTTAT
66 AGAACTTTTTCATAAACACTTAATTGAAATACTAAATGAAGTTCACATAGCATACCATATGTTAG
* *
742258 TATATGCCCTAAAGCCAAGCAACTTGGATGTGGTATATATTAGTTAATAATGCAAACTAATCACT
131 TATATGCCCTAAAGCCAAGCAACTTAGATGTGGCATATATTAGTTAATAATGCAAACTAATCACT
*
742323 TGGTTCAATGATATAAGGTTTTCCTATATTAGTAGT
196 TAGTTCAATGATATAAGGTTTTCCTATATTAGTAGT
*
742359 ATGATGATTAACAGAAGACAACATAGTATCATAAGTCAAACAATTAGTTATACAATTGACACATG
1 ATGATGATTAACAGAAGACAACATAGTATCATAAGTCAAACAATTAGTTATACAATAGACACATG
**
742424 AGAACTTTTTCATAAACACTTAATTGAAATACTAAATGAAGTTCACATAGCATGTCATATGTTAG
66 AGAACTTTTTCATAAACACTTAATTGAAATACTAAATGAAGTTCACATAGCATACCATATGTTAG
* * *
742489 TATATGCTCTAGAGCCAAGCAGCTTAGATGTGGCATATATTAGTTAATAATGCAAACTAATCACT
131 TATATGCCCTAAAGCCAAGCAACTTAGATGTGGCATATATTAGTTAATAATGCAAACTAATCACT
*
742554 TAGTTTAATGATATAAGGTTTTCCTATATTAGTAGT
196 TAGTTCAATGATATAAGGTTTTCCTATATTAGTAGT
742590 ATGA
1 ATGA
742594 CTAACATTCA
Statistics
Matches: 222, Mismatches: 13, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
231 222 1.00
ACGTcount: A:0.39, C:0.14, G:0.15, T:0.33
Consensus pattern (231 bp):
ATGATGATTAACAGAAGACAACATAGTATCATAAGTCAAACAATTAGTTATACAATAGACACATG
AGAACTTTTTCATAAACACTTAATTGAAATACTAAATGAAGTTCACATAGCATACCATATGTTAG
TATATGCCCTAAAGCCAAGCAACTTAGATGTGGCATATATTAGTTAATAATGCAAACTAATCACT
TAGTTCAATGATATAAGGTTTTCCTATATTAGTAGT
Found at i:744304 original size:41 final size:41
Alignment explanation
Indices: 744259--744376 Score: 101
Period size: 41 Copynumber: 3.0 Consensus size: 41
744249 ATAAACATTA
744259 ACTAATACTAAATGGAGTTCTCATACGAGTAATGTTTAGTG
1 ACTAATACTAAATGGAGTTCTCATACGAGTAATGTTTAGTG
** * * *
744300 ACTAA-ACATCTCAT-TA-ATCTCATTAC-ACT--TG---AGTG
1 ACTAATAC-T-AAATGGAGTTCTCA-TACGAGTAATGTTTAGTG
744335 ACTAATACTAAATGGAGTTCTCATACGAGTAATGTTTAGTG
1 ACTAATACTAAATGGAGTTCTCATACGAGTAATGTTTAGTG
744376 A
1 A
744377 ATTTGTTTCT
Statistics
Matches: 55, Mismatches: 10, Indels: 24
0.62 0.11 0.27
Matches are distributed among these distances:
34 2 0.04
35 14 0.25
36 9 0.16
38 4 0.07
40 9 0.16
41 15 0.27
42 2 0.04
ACGTcount: A:0.35, C:0.15, G:0.16, T:0.34
Consensus pattern (41 bp):
ACTAATACTAAATGGAGTTCTCATACGAGTAATGTTTAGTG
Found at i:753487 original size:17 final size:16
Alignment explanation
Indices: 753464--753506 Score: 59
Period size: 17 Copynumber: 2.6 Consensus size: 16
753454 ACTTAATACT
753464 ATTCATGTATATTCATA
1 ATTCATGTATATTCA-A
* *
753481 GTTCATGAATATTCAA
1 ATTCATGTATATTCAA
753497 ATTCATGTAT
1 ATTCATGTAT
753507 TTACATATTC
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
16 9 0.41
17 13 0.59
ACGTcount: A:0.35, C:0.12, G:0.09, T:0.44
Consensus pattern (16 bp):
ATTCATGTATATTCAA
Found at i:753516 original size:16 final size:16
Alignment explanation
Indices: 753463--753522 Score: 59
Period size: 16 Copynumber: 3.7 Consensus size: 16
753453 TACTTAATAC
*
753463 TATTCATGTATATTCA
1 TATTCATGAATATTCA
753479 TAGTTCATGAATATTCA
1 TA-TTCATGAATATTCA
* *
753496 AATTCATGTAT-TTACA
1 TATTCATGAATATT-CA
*
753512 TATTCAAGAAT
1 TATTCATGAAT
753523 GTACATATTA
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
15 2 0.06
16 20 0.56
17 14 0.39
ACGTcount: A:0.37, C:0.12, G:0.08, T:0.43
Consensus pattern (16 bp):
TATTCATGAATATTCA
Found at i:754697 original size:13 final size:13
Alignment explanation
Indices: 754679--754703 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
754669 CACATTTAAA
754679 TGTATCGATACAT
1 TGTATCGATACAT
754692 TGTATCGATACA
1 TGTATCGATACA
754704 AGACTAAATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:754717 original size:20 final size:21
Alignment explanation
Indices: 754692--754746 Score: 67
Period size: 20 Copynumber: 2.7 Consensus size: 21
754682 ATCGATACAT
**
754692 TGTATCGATACAAGACTA-AA
1 TGTATCGATACAAGAAAAGAA
**
754712 TGTATCGATACTTGAAAAGAA
1 TGTATCGATACAAGAAAAGAA
754733 TGTATCGATACAAG
1 TGTATCGATACAAG
754747 TCATTGGCAG
Statistics
Matches: 28, Mismatches: 6, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
20 14 0.50
21 14 0.50
ACGTcount: A:0.42, C:0.13, G:0.18, T:0.27
Consensus pattern (21 bp):
TGTATCGATACAAGAAAAGAA
Found at i:754814 original size:13 final size:13
Alignment explanation
Indices: 754796--754821 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
754786 ACACACAGTA
754796 TGTATCGATACAT
1 TGTATCGATACAT
754809 TGTATCGATACAT
1 TGTATCGATACAT
754822 CATAAAATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:761014 original size:13 final size:13
Alignment explanation
Indices: 760996--761020 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
760986 CAGCATTCTC
760996 TGTATCGATACAT
1 TGTATCGATACAT
761009 TGTATCGATACA
1 TGTATCGATACA
761021 CTATATTGAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:762922 original size:22 final size:21
Alignment explanation
Indices: 762896--762939 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
762886 CGAAAGTGTT
*
762896 AAATTATTTTACTAAGGGGGAG
1 AAATT-TTTGACTAAGGGGGAG
*
762918 AAATTTTTGATTAAGGGGGAG
1 AAATTTTTGACTAAGGGGGAG
762939 A
1 A
762940 GAAAAGAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 15 0.75
22 5 0.25
ACGTcount: A:0.36, C:0.02, G:0.30, T:0.32
Consensus pattern (21 bp):
AAATTTTTGACTAAGGGGGAG
Found at i:763492 original size:13 final size:13
Alignment explanation
Indices: 763474--763498 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
763464 CACATTTAAA
763474 TGTATCGATACAT
1 TGTATCGATACAT
763487 TGTATCGATACA
1 TGTATCGATACA
763499 AGACTAAATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:763512 original size:20 final size:21
Alignment explanation
Indices: 763487--763541 Score: 67
Period size: 20 Copynumber: 2.7 Consensus size: 21
763477 ATCGATACAT
**
763487 TGTATCGATACAAGACTA-AA
1 TGTATCGATACAAGAAAAGAA
**
763507 TGTATCGATACTTGAAAAGAA
1 TGTATCGATACAAGAAAAGAA
763528 TGTATCGATACAAG
1 TGTATCGATACAAG
763542 TCATTGGTAG
Statistics
Matches: 28, Mismatches: 6, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
20 14 0.50
21 14 0.50
ACGTcount: A:0.42, C:0.13, G:0.18, T:0.27
Consensus pattern (21 bp):
TGTATCGATACAAGAAAAGAA
Found at i:763609 original size:13 final size:13
Alignment explanation
Indices: 763591--763616 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
763581 ACACACAGTA
763591 TGTATCGATACAT
1 TGTATCGATACAT
763604 TGTATCGATACAT
1 TGTATCGATACAT
763617 CATAAAATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:763612 original size:32 final size:33
Alignment explanation
Indices: 763571--763638 Score: 93
Period size: 33 Copynumber: 2.1 Consensus size: 33
763561 GTAGCCAAAC
** *
763571 TTGTATCGATACA-CACAGTATGTATCGATACA
1 TTGTATCGATACATCACAAAATATATCGATACA
*
763603 TTGTATCGATACATCATAAAATATATCGATACA
1 TTGTATCGATACATCACAAAATATATCGATACA
763636 TTG
1 TTG
763639 GCTTGTAACG
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
32 13 0.42
33 18 0.58
ACGTcount: A:0.37, C:0.16, G:0.13, T:0.34
Consensus pattern (33 bp):
TTGTATCGATACATCACAAAATATATCGATACA
Found at i:765371 original size:20 final size:21
Alignment explanation
Indices: 765329--765375 Score: 69
Period size: 20 Copynumber: 2.3 Consensus size: 21
765319 TTCTACAATT
*
765329 TGTATCGATACAACAAGTTAA
1 TGTATCGATACAACAAGTGAA
*
765350 TGTATCGATAC-ATAAGTGAA
1 TGTATCGATACAACAAGTGAA
765370 TGTATC
1 TGTATC
765376 AACACTGGAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
20 13 0.54
21 11 0.46
ACGTcount: A:0.38, C:0.13, G:0.17, T:0.32
Consensus pattern (21 bp):
TGTATCGATACAACAAGTGAA
Found at i:770687 original size:13 final size:15
Alignment explanation
Indices: 770655--770689 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
770645 AATAGATGTC
770655 AAAAACCAATATATA
1 AAAAACCAATATATA
*
770670 AAAAACCAATAAATA
1 AAAAACCAATATATA
770685 AAAAA
1 AAAAA
770690 AATATTGATT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.74, C:0.11, G:0.00, T:0.14
Consensus pattern (15 bp):
AAAAACCAATATATA
Found at i:771194 original size:277 final size:278
Alignment explanation
Indices: 770764--771328 Score: 752
Period size: 277 Copynumber: 2.0 Consensus size: 278
770754 ATCACAAATT
* * *** *
770764 AAATTAACACTAGCGCTAATAAAATAATTAATTAGAATATTGGTATAAACATGCATAATCTAACA
1 AAATTAACACTAGCACCAATAAAATAATTAATTAGAATATTGGTATAAACAAAAATAATCAAACA
*
770829 CAATATAATAATAATTAAGACATTGATTTTATGCATGCATTTAAAACAAAGAAAATTAAGCATCA
66 CAATATAATAATAATTAAGACATTGA-TTTATGCATGCATTTAAAACAAAAAAAATTAAGCATCA
770894 AAATTTATAAACAAATAAATATTTGTTATCAAATAACCCGACAAAG-A-AAA-AAACAAAATAAA
130 AAATTTATAAACAAATAAATATTTGTTATCAAATAACCCGACAAAGAACAAATAAACAAAATAAA
* * * *
770956 TAG-AAGAA-TTTTGCCTTAAGATTGTTGGAAAATTATTTTGTATATTTGTAAAACTTTGTTGGA
195 TAGAAAAAAGTTTCGCCTTAAGATTGTTGGAAAATTATTTTGTATATTTCTAAAACTTTGTTGAA
*
771019 AAATTTTATT-TAGAAAAC
260 AAAATTTATTGTAGAAAAC
*
771037 AAATTAACACTAGCACCAATACAATAATTAATTAGAATATTGGTATGAAAACACAAAAAAATAAA
1 AAATTAACACTAGCACCAATAAAATAATTAATTAGAATATTGGTAT---AA-AC--AAAAAT-AA
* *
771102 TCAAACACAATATAATGATAATTCAA-ACATTGA-TT-TGCATGCATTTAAAATAAAAAAAATTA
59 TCAAACACAATATAATAATAATT-AAGACATTGATTTATGCATGCATTTAAAACAAAAAAAATTA
* * * *
771164 AGCATCAATATTTATAAACAAATCAATATTTGTTATCAAGTAACCCTACAAAGAAAGCAAATAAA
123 AGCATCAAAATTTATAAACAAATAAATATTTGTTATCAAATAACCCGACAAAG-AA-CAAATAAA
*
771229 CAAAATAAATAGAAAAAAAAAGTTTCGCTTTAAGATTGTTGGAAAATTATTTTGTATATTTCTAA
186 CAAAATAAATAG---AAAAAAGTTTCGCCTTAAGATTGTTGGAAAATTATTTTGTATATTTCTAA
*
771294 AACTTTGTTGAAAAAATTTATTGTAGAAAAT
248 AACTTTGTTGAAAAAATTTATTGTAGAAAAC
771325 AAAT
1 AAAT
771329 ATGAAGGATA
Statistics
Matches: 252, Mismatches: 21, Indels: 23
0.85 0.07 0.08
Matches are distributed among these distances:
273 43 0.17
276 2 0.01
277 76 0.30
278 2 0.01
279 4 0.02
280 30 0.12
281 5 0.02
282 15 0.06
286 4 0.02
287 60 0.24
288 11 0.04
ACGTcount: A:0.49, C:0.10, G:0.10, T:0.31
Consensus pattern (278 bp):
AAATTAACACTAGCACCAATAAAATAATTAATTAGAATATTGGTATAAACAAAAATAATCAAACA
CAATATAATAATAATTAAGACATTGATTTATGCATGCATTTAAAACAAAAAAAATTAAGCATCAA
AATTTATAAACAAATAAATATTTGTTATCAAATAACCCGACAAAGAACAAATAAACAAAATAAAT
AGAAAAAAGTTTCGCCTTAAGATTGTTGGAAAATTATTTTGTATATTTCTAAAACTTTGTTGAAA
AAATTTATTGTAGAAAAC
Found at i:771825 original size:17 final size:17
Alignment explanation
Indices: 771799--771931 Score: 78
Period size: 17 Copynumber: 7.6 Consensus size: 17
771789 CATGAATATA
* *
771799 TCATGTATATTCATAGT
1 TCATGAATATTCATAAT
771816 TCATGAATATTCA-AAT
1 TCATGAATATTCATAAT
771832 TCATGAAT-TTACATAAT
1 TCATGAATATT-CATAAT
* *
771849 TCATTAATGTTCATAAT
1 TCATGAATATTCATAAT
* * * *
771866 ACCATTTAGGTATATACATGAT
1 -TCA--T--GAATATTCATAAT
*
771888 TCATGAATACTCA-AAT
1 TCATGAATATTCATAAT
771904 TCATGAATAATT-A-AAGT
1 TCATGAAT-ATTCATAA-T
771921 TCATGAATATT
1 TCATGAATATT
771932 GATAGTAACA
Statistics
Matches: 91, Mismatches: 15, Indels: 21
0.72 0.12 0.17
Matches are distributed among these distances:
15 2 0.02
16 28 0.31
17 45 0.49
18 4 0.04
19 1 0.01
20 1 0.01
21 2 0.02
22 8 0.09
ACGTcount: A:0.39, C:0.12, G:0.09, T:0.40
Consensus pattern (17 bp):
TCATGAATATTCATAAT
Found at i:771852 original size:33 final size:33
Alignment explanation
Indices: 771767--771912 Score: 86
Period size: 33 Copynumber: 4.4 Consensus size: 33
771757 ATGAATGCTT
* * *
771767 AAATTTATGAATGTATATAATTCATGAATA-T-
1 AAATTCATGAATATACATAATTCATGAATATTC
* * *
771798 --A-TCATGTATATTCATAGTTCATGAATATTC
1 AAATTCATGAATATACATAATTCATGAATATTC
* * *
771828 AAATTCATGAATTTACATAATTCATTAATGTTC
1 AAATTCATGAATATACATAATTCATGAATATTC
* * * *
771861 ATAATACCATTTAGGTATATACATGATTCATGAATACTC
1 A-AAT-TCA--T--GAATATACATAATTCATGAATATTC
771900 AAATTCATGAATA
1 AAATTCATGAATA
771913 ATTAAAGTTC
Statistics
Matches: 83, Mismatches: 21, Indels: 20
0.67 0.17 0.16
Matches are distributed among these distances:
28 20 0.24
29 2 0.02
32 1 0.01
33 28 0.34
34 3 0.04
35 3 0.04
37 3 0.04
38 3 0.04
39 20 0.24
ACGTcount: A:0.40, C:0.11, G:0.09, T:0.40
Consensus pattern (33 bp):
AAATTCATGAATATACATAATTCATGAATATTC
Found at i:774183 original size:22 final size:23
Alignment explanation
Indices: 774137--774189 Score: 63
Period size: 22 Copynumber: 2.3 Consensus size: 23
774127 TAAGATGAGC
* * *
774137 AAATATATTATTATTTTTAAGT-A
1 AAATA-ATTATTATTCTAAAATAA
774160 AAATAATTATTATTCTAAAATAA
1 AAATAATTATTATTCTAAAATAA
774183 AAATAAT
1 AAATAAT
774190 CATATAATTT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
22 13 0.50
23 13 0.50
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.43
Consensus pattern (23 bp):
AAATAATTATTATTCTAAAATAA
Found at i:775698 original size:20 final size:20
Alignment explanation
Indices: 775647--775702 Score: 69
Period size: 20 Copynumber: 2.8 Consensus size: 20
775637 TTCTACAATT
*
775647 TGTATTGATACAACAAGTGAA
1 TGTATTGATAC-ATAAGTGAA
*
775668 TGTATTAATACATAAGTGAA
1 TGTATTGATACATAAGTGAA
*
775688 TGTATCGATAC-TAAG
1 TGTATTGATACATAAG
775703 GCTTATTGTA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
19 4 0.13
20 17 0.55
21 10 0.32
ACGTcount: A:0.41, C:0.09, G:0.18, T:0.32
Consensus pattern (20 bp):
TGTATTGATACATAAGTGAA
Found at i:775803 original size:21 final size:21
Alignment explanation
Indices: 775777--775841 Score: 78
Period size: 21 Copynumber: 3.1 Consensus size: 21
775767 TACATAAGTG
*
775777 AATGTATCAATACATGCTGGC
1 AATGTATCGATACATGCTGGC
* * *
775798 AATGTATCGGTACATTCT-TC
1 AATGTATCGATACATGCTGGC
*
775818 AATGTATCGATACATGCAGGC
1 AATGTATCGATACATGCTGGC
775839 AAT
1 AAT
775842 TTTACAGATT
Statistics
Matches: 35, Mismatches: 8, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
20 16 0.46
21 19 0.54
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.31
Consensus pattern (21 bp):
AATGTATCGATACATGCTGGC
Found at i:778190 original size:97 final size:96
Alignment explanation
Indices: 777994--778221 Score: 228
Period size: 97 Copynumber: 2.4 Consensus size: 96
777984 AAAGGTATAA
* * * * *
777994 AAATAGTTATCATTGGAGATACTCCAACCCCA-TCTTTTGAGGGGATACTCTAAACCCGTTTTTA
1 AAATGGTTATCATTGG-GACACTCCAACCCTATTCTTCTGAGGGGATACTCTAAACCCGCTTTTA
* * * * *
778058 AGCTCGTCAAAGTTTAAATCTTATTTTTGCCT
65 AACTCGTCAAAATTTAAATCTAATTTATACCT
**
778090 AAATTTTTATCATTAGGGACACTCCAACCCTATTCTTCTGAGGAGG-TACTCT-AACCCTGCTTT
1 AAATGGTTATCATT-GGGACACTCCAACCCTATTCTTCTGAGG-GGATACTCTAAACCC-GCTTT
* * *
778153 TAAACTTGTTAAAATTTAAATCTAATTTATACTT
63 TAAACTCGTCAAAATTTAAATCTAATTTATACCT
* * *
778187 AAATGGTCATCATCTGGGACATTCCAACCATATTC
1 AAATGGTTATCAT-TGGGACACTCCAACCCTATTC
778222 CTTCGAGTGG
Statistics
Matches: 108, Mismatches: 19, Indels: 9
0.79 0.14 0.07
Matches are distributed among these distances:
96 30 0.28
97 75 0.69
98 3 0.03
ACGTcount: A:0.30, C:0.21, G:0.13, T:0.36
Consensus pattern (96 bp):
AAATGGTTATCATTGGGACACTCCAACCCTATTCTTCTGAGGGGATACTCTAAACCCGCTTTTAA
ACTCGTCAAAATTTAAATCTAATTTATACCT
Found at i:788274 original size:33 final size:32
Alignment explanation
Indices: 788237--788298 Score: 90
Period size: 33 Copynumber: 1.9 Consensus size: 32
788227 CACCCAGATG
788237 TATCGATACATATTGCTT-AGTATCGATACATTA
1 TATCGATACATATT-CTTGA-TATCGATACATTA
*
788270 TATCGATACATGTTCTTGATATCGATACA
1 TATCGATACATATTCTTGATATCGATACA
788299 CCTTGAAATA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
32 13 0.48
33 14 0.52
ACGTcount: A:0.32, C:0.16, G:0.13, T:0.39
Consensus pattern (32 bp):
TATCGATACATATTCTTGATATCGATACATTA
Found at i:788298 original size:32 final size:33
Alignment explanation
Indices: 788237--788298 Score: 92
Period size: 32 Copynumber: 1.9 Consensus size: 33
788227 CACCCAGATG
788237 TATCGATACATATTGCTTAGTATCGATACATTA
1 TATCGATACATATTGCTTAGTATCGATACATTA
*
788270 TATCGATACATGTT-CTT-GATATCGATACA
1 TATCGATACATATTGCTTAG-TATCGATACA
788299 CCTTGAAATA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
31 1 0.04
32 13 0.48
33 13 0.48
ACGTcount: A:0.32, C:0.16, G:0.13, T:0.39
Consensus pattern (33 bp):
TATCGATACATATTGCTTAGTATCGATACATTA
Found at i:788364 original size:13 final size:13
Alignment explanation
Indices: 788346--788372 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
788336 AAAACTCACT
788346 TTGTATCGATACA
1 TTGTATCGATACA
788359 TTGTATCGATACA
1 TTGTATCGATACA
788372 T
1 T
788373 GATGAATTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:788383 original size:20 final size:20
Alignment explanation
Indices: 788358--788412 Score: 92
Period size: 20 Copynumber: 2.8 Consensus size: 20
788348 GTATCGATAC
788358 ATTGTATCGATACATGATGA
1 ATTGTATCGATACATGATGA
*
788378 ATTGTATCGATACATGGTGA
1 ATTGTATCGATACATGATGA
*
788398 ATTGTATTGATACAT
1 ATTGTATCGATACAT
788413 TGAGCCCAAC
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.33, C:0.09, G:0.20, T:0.38
Consensus pattern (20 bp):
ATTGTATCGATACATGATGA
Found at i:788890 original size:36 final size:31
Alignment explanation
Indices: 788842--788934 Score: 107
Period size: 36 Copynumber: 2.8 Consensus size: 31
788832 CCAAGTGATT
788842 GAGAGGTTCTATCTTAGCCTTTGAAAAAGATA
1 GAGAGGTTCTATCTTAGCC-TTGAAAAAGATA
*
788874 GGGAAAGAGGTTCTATCTTAGCCCGTG-AAAAGATA
1 --G--AGAGGTTCTATCTTAG-CCTTGAAAAAGATA
788909 GAGAGGTTTCTATCTTAGCCTTGAAA
1 GAGAGG-TTCTATCTTAGCCTTGAAA
788935 GATAGTGTTG
Statistics
Matches: 52, Mismatches: 2, Indels: 12
0.79 0.03 0.18
Matches are distributed among these distances:
31 9 0.17
32 13 0.25
33 1 0.02
34 1 0.02
35 8 0.15
36 18 0.35
37 2 0.04
ACGTcount: A:0.32, C:0.14, G:0.25, T:0.29
Consensus pattern (31 bp):
GAGAGGTTCTATCTTAGCCTTGAAAAAGATA
Found at i:791250 original size:17 final size:18
Alignment explanation
Indices: 791212--791250 Score: 55
Period size: 17 Copynumber: 2.3 Consensus size: 18
791202 TTAGAGGTGA
*
791212 TTTAGGCCTATTTTAAAC
1 TTTAAGCCTATTTTAAAC
791230 -TTAAGCCTATTTT-AAC
1 TTTAAGCCTATTTTAAAC
791246 TTTAA
1 TTTAA
791251 ACCTTATTAG
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
16 3 0.16
17 16 0.84
ACGTcount: A:0.31, C:0.15, G:0.08, T:0.46
Consensus pattern (18 bp):
TTTAAGCCTATTTTAAAC
Found at i:796662 original size:19 final size:19
Alignment explanation
Indices: 796638--796674 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
796628 AAATAAATTA
*
796638 AATCCATAGAGGATTCTTT
1 AATCCATAGAAGATTCTTT
*
796657 AATCCATGGAAGATTCTT
1 AATCCATAGAAGATTCTT
796675 AAACCCTAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.35
Consensus pattern (19 bp):
AATCCATAGAAGATTCTTT
Done.