Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold288
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 358258
ACGTcount: A:0.36, C:0.14, G:0.14, T:0.35
File 1 of 3
Found at i:4031 original size:27 final size:27
Alignment explanation
Indices: 3970--4040 Score: 90
Period size: 27 Copynumber: 2.6 Consensus size: 27
3960 AAACAAGCCT
* *
3970 CCATATTTGACAAATACAAAGGAAACCA
1 CCATTTTTGACAAACACAAA-GAAACCA
3998 CCATTTTTGACAAACACAAA-ATAACCA
1 CCATTTTTGACAAACACAAAGA-AACCA
*
4025 CCATTTTTTACAAACA
1 CCATTTTTGACAAACA
4041 AATGGGTGGC
Statistics
Matches: 39, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
26 1 0.03
27 20 0.51
28 18 0.46
ACGTcount: A:0.46, C:0.24, G:0.06, T:0.24
Consensus pattern (27 bp):
CCATTTTTGACAAACACAAAGAAACCA
Found at i:5160 original size:20 final size:20
Alignment explanation
Indices: 5135--5173 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
5125 TCATGAGTTA
5135 ATTATA-AAATTAATTTTTAT
1 ATTATATAAATT-ATTTTTAT
5155 ATTATATTAAATTATTTTT
1 ATTATA-TAAATTATTTTT
5174 GTTTAAATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
20 6 0.35
21 6 0.35
22 5 0.29
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (20 bp):
ATTATATAAATTATTTTTAT
Found at i:5496 original size:16 final size:16
Alignment explanation
Indices: 5474--5618 Score: 77
Period size: 16 Copynumber: 8.8 Consensus size: 16
5464 TGTATTATGA
5474 TTATATTTA-AAATAT
1 TTATATTTATAAATAT
*
5489 TATATATTTATTAATAT
1 T-TATATTTATAAATAT
*
5506 TTATA-TTAT-TA-AT
1 TTATATTTATAAATAT
*
5519 TTATATTATATAAATTT
1 TTATATT-TATAAATAT
**
5536 TAATATATTTATATCGTAT
1 T--TATATTTATA-AATAT
* *
5555 TTATATTATTTATATTAT
1 TTATATT-TATA-AATAT
*
5573 ATTATATTT-TAATTAT
1 -TTATATTTATAAATAT
*
5589 TTATA-TTATATTATAT
1 TTATATTTATA-AATAT
5605 TTATATATTATAAA
1 TTATAT-TTATAAA
5619 ATTATATCGT
Statistics
Matches: 102, Mismatches: 13, Indels: 28
0.71 0.09 0.20
Matches are distributed among these distances:
13 7 0.07
14 4 0.04
15 15 0.15
16 26 0.25
17 17 0.17
18 17 0.17
19 16 0.16
ACGTcount: A:0.40, C:0.01, G:0.01, T:0.59
Consensus pattern (16 bp):
TTATATTTATAAATAT
Found at i:5525 original size:25 final size:25
Alignment explanation
Indices: 5448--5614 Score: 130
Period size: 25 Copynumber: 6.7 Consensus size: 25
5438 TATTTACATT
* *
5448 TTATTTTTATATT-TTATGTATTATGA
1 TTATATTTATATTATTA-ATATTAT-A
* *
5474 TTATATTTAAAATATTATATATT-TA
1 TTATATTTATATTATTA-ATATTATA
5499 TTAATATTTATATTATTAAT-TTATA
1 TT-ATATTTATATTATTAATATTATA
** * *
5524 TTATATAAATTTTAAT-ATATTTATA
1 TTATATTTATATTATTAATA-TTATA
** *
5549 TCGTATTTATATTATTTATATTATA
1 TTATATTTATATTATTAATATTATA
*
5574 TTATATTT-TAATTATTTATATTATA
1 TTATATTTAT-ATTATTAATATTATA
5599 TTATATTTATA-TATTA
1 TTATATTTATATTATTA
5615 TAAAATTATA
Statistics
Matches: 114, Mismatches: 19, Indels: 18
0.75 0.13 0.12
Matches are distributed among these distances:
23 2 0.02
24 17 0.15
25 59 0.52
26 28 0.25
27 8 0.07
ACGTcount: A:0.37, C:0.01, G:0.02, T:0.60
Consensus pattern (25 bp):
TTATATTTATATTATTAATATTATA
Found at i:5525 original size:45 final size:50
Alignment explanation
Indices: 5456--5605 Score: 146
Period size: 45 Copynumber: 3.2 Consensus size: 50
5446 TTTTATTTTT
5456 ATATTT-TATGTATT-ATGATTATATT-TA-AAATATT-ATATATTTAT-TA
1 ATATTTATAT-TATTAAT-ATTATATTATATAAATATTAATATATTTATATA
* *
5502 ATATTTATATTATTAAT-TTATATTATATAAATTTTAATATATTTATATC
1 ATATTTATATTATTAATATTATATTATATAAATATTAATATATTTATATA
* * *
5551 GTATTTATATTATTTATATTATATTATAT---T-TTAAT-TATTTATATT
1 ATATTTATATTATTAATATTATATTATATAAATATTAATATATTTATATA
5596 ATA-TTATATT
1 ATATTTATATT
5606 TATATATTAT
Statistics
Matches: 91, Mismatches: 6, Indels: 16
0.81 0.05 0.14
Matches are distributed among these distances:
44 7 0.08
45 18 0.20
46 17 0.19
47 12 0.13
48 10 0.11
49 16 0.18
50 11 0.12
ACGTcount: A:0.38, C:0.01, G:0.02, T:0.59
Consensus pattern (50 bp):
ATATTTATATTATTAATATTATATTATATAAATATTAATATATTTATATA
Found at i:5557 original size:11 final size:9
Alignment explanation
Indices: 5488--5615 Score: 90
Period size: 9 Copynumber: 14.0 Consensus size: 9
5478 ATTTAAAATA
5488 TTATA-TAT
1 TTATATTAT
*
5496 TTATTAATAT
1 TTA-TATTAT
5506 TTATATTAT
1 TTATATTAT
*
5515 TAAT-TTAT
1 TTATATTAT
*
5523 ATTATATAAAT
1 -TTATAT-TAT
5534 TT-TAATATAT
1 TTAT-AT-TAT
5544 TTATATCGTAT
1 TTATAT--TAT
5555 TTATATTAT
1 TTATATTAT
5564 TTATATTAT
1 TTATATTAT
5573 ATTATA-T-T
1 -TTATATTAT
5581 TTA-ATTAT
1 TTATATTAT
5589 TTATATTAT
1 TTATATTAT
5598 ATTATATT-T
1 -TTATATTAT
*
5607 ATATATTAT
1 TTATATTAT
5616 AAAATTATAT
Statistics
Matches: 99, Mismatches: 7, Indels: 27
0.74 0.05 0.20
Matches are distributed among these distances:
6 1 0.01
7 4 0.04
8 18 0.18
9 34 0.34
10 30 0.30
11 12 0.12
ACGTcount: A:0.38, C:0.01, G:0.01, T:0.61
Consensus pattern (9 bp):
TTATATTAT
Found at i:5575 original size:20 final size:20
Alignment explanation
Indices: 5488--5610 Score: 91
Period size: 20 Copynumber: 6.3 Consensus size: 20
5478 ATTTAAAATA
*
5488 TTATA-TATTTAT-TAATAT
1 TTATATTATTTATATTATAT
*
5506 TTATATTATTAAT-TTATA-
1 TTATATTATTTATATTATAT
* *
5524 TTATATAAATTT-TAATATAT
1 TTATAT-TATTTATATTATAT
5544 TTATATCGTATTTATA-T-TAT
1 TTATAT--TATTTATATTATAT
* *
5564 TTATATTATATTATATTTTAA
1 TTATATTAT-TTATATTATAT
5585 TTAT-TTATATTATATTATAT
1 TTATATTAT-TTATATTATAT
5605 TTATAT
1 TTATAT
5611 ATTATAAAAT
Statistics
Matches: 85, Mismatches: 10, Indels: 17
0.76 0.09 0.15
Matches are distributed among these distances:
18 15 0.18
19 22 0.26
20 34 0.40
21 12 0.14
22 2 0.02
ACGTcount: A:0.37, C:0.01, G:0.01, T:0.61
Consensus pattern (20 bp):
TTATATTATTTATATTATAT
Found at i:5609 original size:36 final size:36
Alignment explanation
Indices: 5485--5610 Score: 113
Period size: 36 Copynumber: 3.6 Consensus size: 36
5475 TATATTTAAA
* * *
5485 ATATTATATATTTATTAATATT-TATATT-ATTAATTT
1 ATATTATAT-TATATTTATATTATATTTTAATT-ATTT
* *
5521 ATATTATA-TAAATTT-TAATATA-TTTATATCGTATTT
1 ATATTATATTATATTTATATTATATTTTA-AT--TATTT
5557 ATATTAT-TTATA-TTATATTATATTTTAATTATTT
1 ATATTATATTATATTTATATTATATTTTAATTATTT
5591 ATATTATATTATATTTATAT
1 ATATTATATTATATTTATAT
5611 ATTATAAAAT
Statistics
Matches: 73, Mismatches: 7, Indels: 20
0.73 0.07 0.20
Matches are distributed among these distances:
33 5 0.07
34 18 0.25
35 9 0.12
36 36 0.49
37 5 0.07
ACGTcount: A:0.38, C:0.01, G:0.01, T:0.60
Consensus pattern (36 bp):
ATATTATATTATATTTATATTATATTTTAATTATTT
Found at i:7308 original size:23 final size:23
Alignment explanation
Indices: 7247--7324 Score: 54
Period size: 22 Copynumber: 3.4 Consensus size: 23
7237 ATATTTTATG
* * *
7247 TTTTTATAATCGTGTTATATTTAT
1 TTTTTAT-ATCGTGTTTTAATTAA
* * *
7271 TTTTTGTGTTG-GTTTTAATTAA
1 TTTTTATATCGTGTTTTAATTAA
7293 TTTTTATATCGTG-TTTATATT-A
1 TTTTTATATCGTGTTTTA-ATTAA
7315 TTTTTCATAT
1 TTTTT-ATAT
7325 ATTTAAAATA
Statistics
Matches: 42, Mismatches: 9, Indels: 7
0.72 0.16 0.12
Matches are distributed among these distances:
22 26 0.62
23 10 0.24
24 6 0.14
ACGTcount: A:0.22, C:0.04, G:0.10, T:0.64
Consensus pattern (23 bp):
TTTTTATATCGTGTTTTAATTAA
Found at i:7864 original size:34 final size:34
Alignment explanation
Indices: 7815--7902 Score: 158
Period size: 34 Copynumber: 2.6 Consensus size: 34
7805 AGAGAAACAA
*
7815 AGAAAGGATGAAGAAAAAAAGAAAGAAAGGGAGAG
1 AGAAA-GATAAAGAAAAAAAGAAAGAAAGGGAGAG
7850 AGAAAGATAAAGAAAAAAAGAAAGAAAGGGAGAG
1 AGAAAGATAAAGAAAAAAAGAAAGAAAGGGAGAG
7884 AGAAAGATAAAGAAAAAAA
1 AGAAAGATAAAGAAAAAAA
7903 TTTCATGTTT
Statistics
Matches: 52, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
34 47 0.90
35 5 0.10
ACGTcount: A:0.68, C:0.00, G:0.28, T:0.03
Consensus pattern (34 bp):
AGAAAGATAAAGAAAAAAAGAAAGAAAGGGAGAG
Found at i:8946 original size:19 final size:18
Alignment explanation
Indices: 8922--8964 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
8912 AATTTAAATA
*
8922 AATAAATATTTATTTATTT
1 AATAAATATTTAATT-TTT
8941 AATAAA-ATTTAATTTTT
1 AATAAATATTTAATTTTT
*
8958 ATTAAAT
1 AATAAAT
8965 TAGATAAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
17 8 0.38
18 7 0.33
19 6 0.29
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (18 bp):
AATAAATATTTAATTTTT
Found at i:9160 original size:27 final size:29
Alignment explanation
Indices: 9103--9156 Score: 69
Period size: 27 Copynumber: 2.0 Consensus size: 29
9093 TTTAATGCAT
*
9103 AATTATTATTTAATAAAAATTATAAATTA
1 AATTATTATTTAATAAAAACTATAAATTA
*
9132 AATT-TTA-TTAATAATAACTA-AAATT
1 AATTATTATTTAATAAAAACTATAAATT
9157 TAAAAAATAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
26 5 0.22
27 11 0.48
28 3 0.13
29 4 0.17
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (29 bp):
AATTATTATTTAATAAAAACTATAAATTA
Found at i:13289 original size:48 final size:48
Alignment explanation
Indices: 13227--13534 Score: 412
Period size: 48 Copynumber: 6.5 Consensus size: 48
13217 AGAGGAGTGC
** * *
13227 CAATGTGCCAATTCAAGGCCAACGACATCGAGCTAAGGGAAAAATGGA
1 CAATGTGCTGATTCAAGGCCAGCGACATTGAGCTAAGGGAAAAATGGA
* *
13275 CAATGTGGTGATTCAAGGCCAGCGACATTCAGCTAAGGG-AAAATGGA
1 CAATGTGCTGATTCAAGGCCAGCGACATTGAGCTAAGGGAAAAATGGA
*
13322 CAATGTGCTGATTCAAGGCCAGCGACATTGAGCTAA-TGAAAAAGTGGA
1 CAATGTGCTGATTCAAGGCCAGCGACATTGAGCTAAGGGAAAAA-TGGA
* *
13370 CAATGTGCTGATTCAAGGCCAACGACATTGAGCTAAGGG-AAAATGTA
1 CAATGTGCTGATTCAAGGCCAGCGACATTGAGCTAAGGGAAAAATGGA
* *
13417 CAATGTGCTGATTCAAGGCCAGCGACATTTAGCTAATGGAAAAATGGA
1 CAATGTGCTGATTCAAGGCCAGCGACATTGAGCTAAGGGAAAAATGGA
* * * *
13465 TAATGTGCTGATTCAAGGCCAGCGACATTGAGCTAA--TAAAAGT-GC
1 CAATGTGCTGATTCAAGGCCAGCGACATTGAGCTAAGGGAAAAATGGA
* *
13510 CAATATGCTGATTCAATGCCAGCGA
1 CAATGTGCTGATTCAAGGCCAGCGA
13535 TATCGAATTT
Statistics
Matches: 232, Mismatches: 24, Indels: 11
0.87 0.09 0.04
Matches are distributed among these distances:
45 23 0.10
46 6 0.03
47 85 0.37
48 117 0.50
49 1 0.00
ACGTcount: A:0.35, C:0.18, G:0.26, T:0.21
Consensus pattern (48 bp):
CAATGTGCTGATTCAAGGCCAGCGACATTGAGCTAAGGGAAAAATGGA
Found at i:13355 original size:95 final size:94
Alignment explanation
Indices: 13227--13534 Score: 424
Period size: 95 Copynumber: 3.3 Consensus size: 94
13217 AGAGGAGTGC
** * * *
13227 CAATGTGCCAATTCAAGGCCAACGACATCGAGCTAAGGGAAAAATGGACAATGTGGTGATTCAAG
1 CAATGTGCTGATTCAAGGCCAGCGACATTGAGCTAA-GGAAAAATGGACAATGTGCTGATTCAAG
*
13292 GCCAGCGACATTCAGCTAAGGGAAAATGGA
65 GCCAGCGACATTGAGCTAAGGGAAAATGGA
*
13322 CAATGTGCTGATTCAAGGCCAGCGACATTGAGCTAATGAAAAAGTGGACAATGTGCTGATTCAAG
1 CAATGTGCTGATTCAAGGCCAGCGACATTGAGCTAAGGAAAAA-TGGACAATGTGCTGATTCAAG
* *
13387 GCCAACGACATTGAGCTAAGGGAAAATGTA
65 GCCAGCGACATTGAGCTAAGGGAAAATGGA
* *
13417 CAATGTGCTGATTCAAGGCCAGCGACATTTAGCTAATGGAAAAATGGATAATGTGCTGATTCAAG
1 CAATGTGCTGATTCAAGGCCAGCGACATTGAGCTAA-GGAAAAATGGACAATGTGCTGATTCAAG
* *
13482 GCCAGCGACATTGAGCTAA--TAAAA-GTGC
65 GCCAGCGACATTGAGCTAAGGGAAAATG-GA
* *
13510 CAATATGCTGATTCAATGCCAGCGA
1 CAATGTGCTGATTCAAGGCCAGCGA
13535 TATCGAATTT
Statistics
Matches: 192, Mismatches: 18, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
92 1 0.01
93 27 0.14
94 6 0.03
95 152 0.79
96 6 0.03
ACGTcount: A:0.35, C:0.18, G:0.26, T:0.21
Consensus pattern (94 bp):
CAATGTGCTGATTCAAGGCCAGCGACATTGAGCTAAGGAAAAATGGACAATGTGCTGATTCAAGG
CCAGCGACATTGAGCTAAGGGAAAATGGA
Found at i:13485 original size:143 final size:140
Alignment explanation
Indices: 13222--13540 Score: 469
Period size: 143 Copynumber: 2.3 Consensus size: 140
13212 AGATGAGAGG
* ** *
13222 AGTGCCAATGTGCCAATTCAAGGCCAACGACATCGAGCTAAGGGAAAAATGGACAATGTGGTGAT
1 AGTGACAATGTGCTGATTCAAGGCCAACGACATCGAGCTAAGGGAAAAATGGACAATGTGCTGAT
*
13287 TCAAGGCCAGCGACATTCAGCTAAGGGAAAATGGACAATGTGCTGATTCAAGGCCAGCGACATTG
66 TCAAGGCCAGCGACATTCAGCTAAGGAAAAATGGACAATGTGCTGATTCAAGGCCAGCGACATTG
13352 AGCTAATGAAAA
131 AGCTAAT--AAA
* *
13364 AGTGGACAATGTGCTGATTCAAGGCCAACGACATTGAGCTAAGGG-AAAATGTACAATGTGCTGA
1 AGT-GACAATGTGCTGATTCAAGGCCAACGACATCGAGCTAAGGGAAAAATGGACAATGTGCTGA
* *
13428 TTCAAGGCCAGCGACATTTAGCTAATGGAAAAATGGATAATGTGCTGATTCAAGGCCAGCGACAT
65 TTCAAGGCCAGCGACATTCAGCTAA-GGAAAAATGGACAATGTGCTGATTCAAGGCCAGCGACAT
13493 TGAGCTAATAAA
129 TGAGCTAATAAA
* * * * *
13505 AGTGCCAATATGCTGATTCAATGCCAGCGATATCGA
1 AGTGACAATGTGCTGATTCAAGGCCAACGACATCGA
13541 ATTTTAAGAT
Statistics
Matches: 160, Mismatches: 15, Indels: 6
0.88 0.08 0.03
Matches are distributed among these distances:
140 27 0.17
141 6 0.04
142 44 0.28
143 83 0.52
ACGTcount: A:0.35, C:0.18, G:0.26, T:0.21
Consensus pattern (140 bp):
AGTGACAATGTGCTGATTCAAGGCCAACGACATCGAGCTAAGGGAAAAATGGACAATGTGCTGAT
TCAAGGCCAGCGACATTCAGCTAAGGAAAAATGGACAATGTGCTGATTCAAGGCCAGCGACATTG
AGCTAATAAA
Found at i:13662 original size:28 final size:27
Alignment explanation
Indices: 13605--13729 Score: 126
Period size: 28 Copynumber: 4.4 Consensus size: 27
13595 GCTTTTAAAA
*
13605 AAAAGGTGCCACTAACTTCTGTGGGCTTTG
1 AAAAGATGCCACT-AC-T-TGTGGGCTTTG
* *
13635 AAGAGATGCCACTACCTTGTGGGTTTTG
1 AAAAGATGCCACTA-CTTGTGGGCTTTG
13663 AAAAGATGCCACTAACTTGTGGGCTTT-
1 AAAAGATGCCACT-ACTTGTGGGCTTTG
* *
13690 AGAAGGATGCCACTGACTTGTCGGCTTTG
1 A-AAAGATGCCACT-ACTTGTGGGCTTTG
*
13719 AAAAGTTGCCA
1 AAAAGATGCCA
13730 ATGTGCCAAT
Statistics
Matches: 81, Mismatches: 10, Indels: 10
0.80 0.10 0.10
Matches are distributed among these distances:
27 1 0.01
28 64 0.79
29 4 0.05
30 12 0.15
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (27 bp):
AAAAGATGCCACTACTTGTGGGCTTTG
Found at i:13701 original size:56 final size:58
Alignment explanation
Indices: 13605--13729 Score: 168
Period size: 56 Copynumber: 2.2 Consensus size: 58
13595 GCTTTTAAAA
* * *
13605 AAAAGGTGCCACTAACTTCTGTGGGCTTTGAAGAGATGCCACT-ACCTTGTGGGTTTTG
1 AAAAGATGCCACTAACTTCTGTGGGCTTTGAAGAGATGCCACTGA-CTTGTCGGCTTTG
13663 AAAAGATGCCACTAAC-T-TGTGGGCTTTAGAAG-GATGCCACTGACTTGTCGGCTTTG
1 AAAAGATGCCACTAACTTCTGTGGGCTTT-GAAGAGATGCCACTGACTTGTCGGCTTTG
*
13719 AAAAGTTGCCA
1 AAAAGATGCCA
13730 ATGTGCCAAT
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
56 40 0.66
57 6 0.10
58 15 0.25
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (58 bp):
AAAAGATGCCACTAACTTCTGTGGGCTTTGAAGAGATGCCACTGACTTGTCGGCTTTG
Found at i:13810 original size:48 final size:48
Alignment explanation
Indices: 13736--14043 Score: 412
Period size: 48 Copynumber: 6.5 Consensus size: 48
13726 GCCAATGTGC
** * *
13736 CAATGTGCCAATTCAAGGCCAACGACATCGAGCTAAGGGAAAAATGGA
1 CAATGTGCTGATTCAAGGCCAGCGACATTGAGCTAAGGGAAAAATGGA
* *
13784 CAATGTGGTGATTCAAGGCCAGCGACATTCAGCTAAGGG-AAAATGGA
1 CAATGTGCTGATTCAAGGCCAGCGACATTGAGCTAAGGGAAAAATGGA
*
13831 CAATGTGCTGATTCAAGGCCAGCGACATTGAGCTAA-TGAAAAAGTGGA
1 CAATGTGCTGATTCAAGGCCAGCGACATTGAGCTAAGGGAAAAA-TGGA
* *
13879 CAATGTGCTGATTCAAGGCCAACGACATTGAGCTAAGGG-AAAATGTA
1 CAATGTGCTGATTCAAGGCCAGCGACATTGAGCTAAGGGAAAAATGGA
* *
13926 CAATGTGCTGATTCAAGGCCAGCGACATTTAGCTAATGGAAAAATGGA
1 CAATGTGCTGATTCAAGGCCAGCGACATTGAGCTAAGGGAAAAATGGA
* * * *
13974 TAATGTGCTGATTCAAGGCCAGCGACATTGAGCTAA--TAAAAGT-GC
1 CAATGTGCTGATTCAAGGCCAGCGACATTGAGCTAAGGGAAAAATGGA
* *
14019 CAATATGCTGATTCAATGCCAGCGA
1 CAATGTGCTGATTCAAGGCCAGCGA
14044 TATCGAATTT
Statistics
Matches: 232, Mismatches: 24, Indels: 11
0.87 0.09 0.04
Matches are distributed among these distances:
45 23 0.10
46 6 0.03
47 85 0.37
48 117 0.50
49 1 0.00
ACGTcount: A:0.35, C:0.18, G:0.26, T:0.21
Consensus pattern (48 bp):
CAATGTGCTGATTCAAGGCCAGCGACATTGAGCTAAGGGAAAAATGGA
Found at i:13899 original size:95 final size:94
Alignment explanation
Indices: 13736--14043 Score: 424
Period size: 95 Copynumber: 3.3 Consensus size: 94
13726 GCCAATGTGC
** * * * *
13736 CAATGTGCCAATTCAAGGCCAACGACATCGAGCTAAGGGAAAAATGGACAATGTGGTGATTCAAG
1 CAATGTGCTGATTCAAGGCCAGCGACATTGAGCTAA-TGAAAAATGGACAATGTGCTGATTCAAG
*
13801 GCCAGCGACATTCAGCTAAGGGAAAATGGA
65 GCCAGCGACATTGAGCTAAGGGAAAATGGA
13831 CAATGTGCTGATTCAAGGCCAGCGACATTGAGCTAATGAAAAAGTGGACAATGTGCTGATTCAAG
1 CAATGTGCTGATTCAAGGCCAGCGACATTGAGCTAATGAAAAA-TGGACAATGTGCTGATTCAAG
* *
13896 GCCAACGACATTGAGCTAAGGGAAAATGTA
65 GCCAGCGACATTGAGCTAAGGGAAAATGGA
* *
13926 CAATGTGCTGATTCAAGGCCAGCGACATTTAGCTAATGGAAAAATGGATAATGTGCTGATTCAAG
1 CAATGTGCTGATTCAAGGCCAGCGACATTGAGCTAAT-GAAAAATGGACAATGTGCTGATTCAAG
* *
13991 GCCAGCGACATTGAGCTAA--TAAAA-GTGC
65 GCCAGCGACATTGAGCTAAGGGAAAATG-GA
* *
14019 CAATATGCTGATTCAATGCCAGCGA
1 CAATGTGCTGATTCAAGGCCAGCGA
14044 TATCGAATTT
Statistics
Matches: 193, Mismatches: 17, Indels: 8
0.89 0.08 0.04
Matches are distributed among these distances:
92 1 0.01
93 27 0.14
94 6 0.03
95 153 0.79
96 6 0.03
ACGTcount: A:0.35, C:0.18, G:0.26, T:0.21
Consensus pattern (94 bp):
CAATGTGCTGATTCAAGGCCAGCGACATTGAGCTAATGAAAAATGGACAATGTGCTGATTCAAGG
CCAGCGACATTGAGCTAAGGGAAAATGGA
Found at i:13994 original size:143 final size:140
Alignment explanation
Indices: 13736--14049 Score: 468
Period size: 143 Copynumber: 2.2 Consensus size: 140
13726 GCCAATGTGC
** *
13736 CAATGTGCCAATTCAAGGCCAACGACATCGAGCTAAGGGAAAAATGGACAATGTGGTGATTCAAG
1 CAATGTGCTGATTCAAGGCCAACGACATCGAGCTAAGGGAAAAATGGACAATGTGCTGATTCAAG
*
13801 GCCAGCGACATTCAGCTAAGGGAAAATGGACAATGTGCTGATTCAAGGCCAGCGACATTGAGCTA
66 GCCAGCGACATTCAGCTAAGGAAAAATGGACAATGTGCTGATTCAAGGCCAGCGACATTGAGCTA
13866 ATGAAAAAGTGGA
131 AT--AAAAGT-GA
* *
13879 CAATGTGCTGATTCAAGGCCAACGACATTGAGCTAAGGG-AAAATGTACAATGTGCTGATTCAAG
1 CAATGTGCTGATTCAAGGCCAACGACATCGAGCTAAGGGAAAAATGGACAATGTGCTGATTCAAG
* *
13943 GCCAGCGACATTTAGCTAATGGAAAAATGGATAATGTGCTGATTCAAGGCCAGCGACATTGAGCT
66 GCCAGCGACATTCAGCTAA-GGAAAAATGGACAATGTGCTGATTCAAGGCCAGCGACATTGAGCT
*
14008 AATAAAAGTGC
130 AATAAAAGTGA
* * * *
14019 CAATATGCTGATTCAATGCCAGCGATATCGA
1 CAATGTGCTGATTCAAGGCCAACGACATCGA
14050 ATTTTAAGAT
Statistics
Matches: 156, Mismatches: 14, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
140 27 0.17
141 6 0.04
142 41 0.26
143 82 0.53
ACGTcount: A:0.35, C:0.18, G:0.25, T:0.21
Consensus pattern (140 bp):
CAATGTGCTGATTCAAGGCCAACGACATCGAGCTAAGGGAAAAATGGACAATGTGCTGATTCAAG
GCCAGCGACATTCAGCTAAGGAAAAATGGACAATGTGCTGATTCAAGGCCAGCGACATTGAGCTA
ATAAAAGTGA
Found at i:14170 original size:28 final size:28
Alignment explanation
Indices: 14113--15149 Score: 343
Period size: 32 Copynumber: 34.1 Consensus size: 28
14103 GGCTTTTAAA
* *
14113 AAAAGGTGCCACTAACTTCTGTGGGCTTTG
1 AAAAGATGCCACTGAC-T-TGTGGGCTTTG
* *
14143 AAGAGATGCCACT-ACCTTGTGGGTTTTG
1 AAAAGATGCCACTGA-CTTGTGGGCTTTG
*
14171 AAAAGATGCCACTAACTTGTGGGCTTT-
1 AAAAGATGCCACTGACTTGTGGGCTTTG
* *
14198 AGAAGGATGCCACTGACTTGTCGGCTTTG
1 A-AAAGATGCCACTGACTTGTGGGCTTTG
* * *
14227 AAAAGTTGCCACTGACTCGTCGGCTTTG
1 AAAAGATGCCACTGACTTGTGGGCTTTG
* *
14255 AAAAGTTGCCACTGACTTGTGGGCTTGG
1 AAAAGATGCCACTGACTTGTGGGCTTTG
* *
14283 AAAAGATGCCACCGACTTGTGTGGGTTTTG
1 AAAAGATGCCACTGAC-T-TGTGGGCTTTG
* * ** *
14313 AAATGGGTTGCCACCAACTTGTGTGGGCTATG
1 AAA--AGATGCCACTGAC-T-TGTGGGCTTTG
* ** *
14345 AAATGAGTTGCCACCAACTTGTGTGGGCATTG
1 AAA--AGATGCCACTGAC-T-TGTGGGCTTTG
* *
14377 AAAGGATACCACTGACTTGTGGGCTTTG
1 AAAAGATGCCACTGACTTGTGGGCTTTG
* * * * *
14405 AAAGGGTACCACTAACTTGTGGGCTTTA
1 AAAAGATGCCACTGACTTGTGGGCTTTG
*
14433 AAAAGATGCCACCGACTTGTGTGGGCTTTG
1 AAAAGATGCCACTGAC-T-TGTGGGCTTTG
* * * ** *
14463 AAATGGGCTACCACCAACTTGTGTGGGCTATG
1 AAA--AGATGCCACTGAC-T-TGTGGGCTTTG
* ** *
14495 AAATGAGTTGCCACCAACTTGTGTGGGCATTG
1 AAA--AGATGCCACTGAC-T-TGTGGGCTTTG
*
14527 -AAAGGTCGCCACTGACTTGTGGGCTTTG
1 AAAAGAT-GCCACTGACTTGTGGGCTTTG
* * *
14555 AAAGGGTGCCACTGTCTTGTGGGCTTTG
1 AAAAGATGCCACTGACTTGTGGGCTTTG
*
14583 AAAAGATGCCACCGACTTGTATGGGCTTTG
1 AAAAGATGCCACTGACTTG--TGGGCTTTG
* * * **
14613 AAATGGGTTGTCACCAACTTGTGTGGGCTTTG
1 AAA--AGATGCCACTGAC-T-TGTGGGCTTTG
* **
14645 AAATGAGTTGCCACCAACTTGTGTGGACTTTG
1 AAA--AGATGCCACTGACTTGTG-GG-CTTTG
* ** *
14677 AAATGAGTTGCCACCAACTTGTGTAGGCTTTC
1 AAA--AGATGCCACTGACTTGTG--GGCTTTG
* * ** *
14709 AAATGGGTTGCCACCAACTTGTGTGGGCTTTC
1 AAA--AGATGCCACTGAC-T-TGTGGGCTTTG
* * ** *
14741 AAATAGGTTGTCACCAAATTGTGTGGGCTTTG
1 AAA-A-GATGCCA-CTGACT-TGTGGGCTTTG
* ** *
14773 AAATAGGTTGCCACCAACTTATGTGGGCTTTC
1 AAA-A-GATGCCACTGAC-T-TGTGGGCTTTG
* *
14805 AAATGAGTTGCCACCGACTTGTGTGGGCTTTG
1 AAA--AGATGCCACTGAC-T-TGTGGGCTTTG
* * *
14837 AAAGGGTGCCACTAACTTGTGGGCTTTG
1 AAAAGATGCCACTGACTTGTGGGCTTTG
*
14865 AAAAGATGCCACCGACTTGTGTGGGCTTTG
1 AAAAGATGCCACTGAC-T-TGTGGGCTTTG
* * **
14895 AAATGGGTTGCCACCAACTTGTGTGGACTTTG
1 AAA--AGATGCCACTGACTTGTG-GG-CTTTG
* * *
14927 AAATGAGTTGCAACCGACTTGTGTGGGCTTTG
1 AAA--AGATGCCACTGAC-T-TGTGGGCTTTG
* * **
14959 AAATGGGTTGCCACCAACTTGTGTGGGCTTTG
1 AAA--AGATGCCACTGAC-T-TGTGGGCTTTG
* ** *
14991 AAATAGGTTGCCACCAACTTGTGTGGGCTTTC
1 AAA-A-GATGCCACTGAC-T-TGTGGGCTTTG
* *
15023 AAATGAGTTGCCACCGACTTGTGTGGGCTTTG
1 AAA--AGATGCCACTGAC-T-TGTGGGCTTTG
* * *
15055 AAAGGGTGCCACCGACTTGTGTGGGCTTTG
1 AAAAGATGCCACTGAC-T-TGTGGGCTTTG
* * **
15085 AAAGGGTGCCACCCACTTGTGTAGGCTTTG
1 AAAAGATGCCACTGACTTGTG--GGCTTTG
* * *
15115 AAATGGGTTGCCACTAACTTGTGTGGGCTTTG
1 AAA--AGATGCCACTGAC-T-TGTGGGCTTTG
15147 AAA
1 AAA
15150 TGAGTTGCCA
Statistics
Matches: 848, Mismatches: 114, Indels: 88
0.81 0.11 0.08
Matches are distributed among these distances:
27 1 0.00
28 237 0.28
29 19 0.02
30 145 0.17
31 11 0.01
32 408 0.48
33 13 0.02
34 14 0.02
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.30
Consensus pattern (28 bp):
AAAAGATGCCACTGACTTGTGGGCTTTG
Found at i:14209 original size:56 final size:56
Alignment explanation
Indices: 14113--15149 Score: 426
Period size: 64 Copynumber: 17.1 Consensus size: 56
14103 GGCTTTTAAA
* *
14113 AAAAGGTGCCACTAACTTCTGTGGGCTTTG-AAGAGATGCCACT-ACCTTGTGGGTTTTG
1 AAAAGATGCCACTAAC-T-TGTGGGCTTTGAAAG-GATGCCACTGA-CTTGTGGGCTTTG
*
14171 AAAAGATGCCACTAACTTGTGGGCTTT-AGAAGGATGCCACTGACTTGTCGGCTTTG
1 AAAAGATGCCACTAACTTGTGGGCTTTGA-AAGGATGCCACTGACTTGTGGGCTTTG
* * * * * * *
14227 AAAAGTTGCCACTGACTCGTCGGCTTTGAAAAGTTGCCACTGACTTGTGGGCTTGG
1 AAAAGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTG
** * * ** *
14283 AAAAGATGCCACCGACTTGTGTGGGTTTTGAAATGGGTTGCCACCAACTTGTGTGGGCTATG
1 AAAAGATGCCACTAAC-T-TGTGGGCTTTGAAA--GGATGCCACTGAC-T-TGTGGGCTTTG
* * * *
14345 AAATGAGTTGCCACCAACTTGTGTGGGCATTGAAAGGATACCACTGACTTGTGGGCTTTG
1 AAA--AGATGCCACTAAC-T-TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTG
* * * * * *
14405 AAAGGGTACCACTAACTTGTGGGCTTTAAAAAGATGCCACCGACTTGTGTGGGCTTTG
1 AAAAGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGAC-T-TGTGGGCTTTG
* * * * * * ** *
14463 AAATGGGCTACCACCAACTTGTGTGGGCTATGAAATGAGTTGCCACCAACTTGTGTGGGCATTG
1 AAA--AGATGCCACTAAC-T-TGTGGGCTTTGAAA-G-GATGCCACTGAC-T-TGTGGGCTTTG
* * * *
14527 -AAAGGTCGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGTCTTGTGGGCTTTG
1 AAAAGAT-GCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTG
** * * **
14583 AAAAGATGCCACCGACTTGTATGGGCTTTGAAATGGGTTGTCACCAACTTGTGTGGGCTTTG
1 AAAAGATGCCACTAACTTG--TGGGCTTTGAAA--GGATGCCACTGAC-T-TGTGGGCTTTG
* * * ** *
14645 AAATGAGTTGCCACCAACTTGTGTGGACTTTGAAATGAGTTGCCACCAACTTGTGTAGGCTTTC
1 AAA--AGATGCCACTAACTTGTG-GG-CTTTGAAA-G-GATGCCACTGACTTGTG--GGCTTTG
* * * * * * ** *
14709 AAATGGGTTGCCACCAACTTGTGTGGGCTTTCAAATAGGTTGTCACCAAATTGTGTGGGCTTTG
1 AAA--AGATGCCACTAAC-T-TGTGGGCTTT-GAA-AGGATGCCA-CTGACT-TGTGGGCTTTG
* * * * *
14773 AAATAGGTTGCCACCAACTTATGTGGGCTTTCAAATGAGTTGCCACCGACTTGTGTGGGCTTTG
1 AAA-A-GATGCCACTAAC-T-TGTGGGCTTTGAAA-G-GATGCCACTGAC-T-TGTGGGCTTTG
* * * *
14837 AAAGGGTGCCACTAACTTGTGGGCTTTGAAAAGATGCCACCGACTTGTGTGGGCTTTG
1 AAAAGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGAC-T-TGTGGGCTTTG
* * * * * *
14895 AAATGGGTTGCCACCAACTTGTGTGGACTTTGAAATGAGTTGCAACCGACTTGTGTGGGCTTTG
1 AAA--AGATGCCACTAACTTGTG-GG-CTTTGAAA-G-GATGCCACTGAC-T-TGTGGGCTTTG
* * * * ** *
14959 AAATGGGTTGCCACCAACTTGTGTGGGCTTTGAAATAGGTTGCCACCAACTTGTGTGGGCTTTC
1 AAA--AGATGCCACTAAC-T-TGTGGGCTTTG-AA-AGGATGCCACTGAC-T-TGTGGGCTTTG
* ** * *
15023 AAATGAGTTGCCACCGACTTGTGTGGGCTTTGAAAGGGTGCCACCGACTTGTGTGGGCTTTG
1 AAA--AGATGCCACTAAC-T-TGTGGGCTTTGAAAGGATGCCACTGAC-T-TGTGGGCTTTG
* * ** * *
15085 AAAGGGTGCCACCCACTTGTGTAGGCTTTGAAATGGGTTGCCACTAACTTGTGTGGGCTTTG
1 AAAAGATGCCACTAACTTGTG--GGCTTTGAAA--GGATGCCACTGAC-T-TGTGGGCTTTG
15147 AAA
1 AAA
15150 TGAGTTGCCA
Statistics
Matches: 811, Mismatches: 109, Indels: 114
0.78 0.11 0.11
Matches are distributed among these distances:
56 133 0.16
57 15 0.02
58 101 0.12
59 2 0.00
60 104 0.13
61 10 0.01
62 133 0.16
63 13 0.02
64 270 0.33
65 16 0.02
66 14 0.02
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.30
Consensus pattern (56 bp):
AAAAGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTG
Found at i:14333 original size:32 final size:32
Alignment explanation
Indices: 14289--15161 Score: 978
Period size: 32 Copynumber: 28.2 Consensus size: 32
14279 TTGGAAAAGA
* *
14289 TGCCACCGACTTGTGTGGGTTTTGAAATGGGT
1 TGCCACCAACTTGTGTGGGCTTTGAAATGGGT
* *
14321 TGCCACCAACTTGTGTGGGCTATGAAATGAGT
1 TGCCACCAACTTGTGTGGGCTTTGAAATGGGT
* *
14353 TGCCACCAACTTGTGTGGGCATTGAAA--GGA
1 TGCCACCAACTTGTGTGGGCTTTGAAATGGGT
* **
14383 TACCACTGAC-T-TGTGGGCTTTGAAA-GGG-
1 TGCCACCAACTTGTGTGGGCTTTGAAATGGGT
* * ** *
14411 TACCACTAAC-T-TGTGGGCTTT-AAA-AAGA
1 TGCCACCAACTTGTGTGGGCTTTGAAATGGGT
* *
14439 TGCCACCGACTTGTGTGGGCTTTGAAATGGGC
1 TGCCACCAACTTGTGTGGGCTTTGAAATGGGT
* * *
14471 TACCACCAACTTGTGTGGGCTATGAAATGAGT
1 TGCCACCAACTTGTGTGGGCTTTGAAATGGGT
*
14503 TGCCACCAACTTGTGTGGGCATTGAAA--GGT
1 TGCCACCAACTTGTGTGGGCTTTGAAATGGGT
* **
14533 CGCCACTGAC-T-TGTGGGCTTTGAAA-GGG-
1 TGCCACCAACTTGTGTGGGCTTTGAAATGGGT
*** * *
14561 TGCCACTGTC-T-TGTGGGCTTTGAAA--AGA
1 TGCCACCAACTTGTGTGGGCTTTGAAATGGGT
* *
14589 TGCCACCGACTTGTATGGGCTTTGAAATGGGT
1 TGCCACCAACTTGTGTGGGCTTTGAAATGGGT
* *
14621 TGTCACCAACTTGTGTGGGCTTTGAAATGAGT
1 TGCCACCAACTTGTGTGGGCTTTGAAATGGGT
* *
14653 TGCCACCAACTTGTGTGGACTTTGAAATGAGT
1 TGCCACCAACTTGTGTGGGCTTTGAAATGGGT
* *
14685 TGCCACCAACTTGTGTAGGCTTTCAAATGGGT
1 TGCCACCAACTTGTGTGGGCTTTGAAATGGGT
* *
14717 TGCCACCAACTTGTGTGGGCTTTCAAATAGGT
1 TGCCACCAACTTGTGTGGGCTTTGAAATGGGT
* * *
14749 TGTCACCAAATTGTGTGGGCTTTGAAATAGGT
1 TGCCACCAACTTGTGTGGGCTTTGAAATGGGT
* * *
14781 TGCCACCAACTTATGTGGGCTTTCAAATGAGT
1 TGCCACCAACTTGTGTGGGCTTTGAAATGGGT
*
14813 TGCCACCGACTTGTGTGGGCTTTGAAA-GGG-
1 TGCCACCAACTTGTGTGGGCTTTGAAATGGGT
* * *
14843 TGCCACTAAC-T-TGTGGGCTTTGAAA--AGA
1 TGCCACCAACTTGTGTGGGCTTTGAAATGGGT
*
14871 TGCCACCGACTTGTGTGGGCTTTGAAATGGGT
1 TGCCACCAACTTGTGTGGGCTTTGAAATGGGT
* *
14903 TGCCACCAACTTGTGTGGACTTTGAAATGAGT
1 TGCCACCAACTTGTGTGGGCTTTGAAATGGGT
* *
14935 TGCAACCGACTTGTGTGGGCTTTGAAATGGGT
1 TGCCACCAACTTGTGTGGGCTTTGAAATGGGT
*
14967 TGCCACCAACTTGTGTGGGCTTTGAAATAGGT
1 TGCCACCAACTTGTGTGGGCTTTGAAATGGGT
* *
14999 TGCCACCAACTTGTGTGGGCTTTCAAATGAGT
1 TGCCACCAACTTGTGTGGGCTTTGAAATGGGT
*
15031 TGCCACCGACTTGTGTGGGCTTTGAAA-GGG-
1 TGCCACCAACTTGTGTGGGCTTTGAAATGGGT
*
15061 TGCCACCGACTTGTGTGGGCTTTGAAA-GGG-
1 TGCCACCAACTTGTGTGGGCTTTGAAATGGGT
* *
15091 TGCCACCCACTTGTGTAGGCTTTGAAATGGGT
1 TGCCACCAACTTGTGTGGGCTTTGAAATGGGT
* *
15123 TGCCACTAACTTGTGTGGGCTTTGAAATGAGT
1 TGCCACCAACTTGTGTGGGCTTTGAAATGGGT
15155 TGCCACC
1 TGCCACC
15162 GATGAATAAA
Statistics
Matches: 725, Mismatches: 97, Indels: 38
0.84 0.11 0.04
Matches are distributed among these distances:
27 6 0.01
28 106 0.15
29 10 0.01
30 117 0.16
31 10 0.01
32 476 0.66
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.30
Consensus pattern (32 bp):
TGCCACCAACTTGTGTGGGCTTTGAAATGGGT
Found at i:14403 original size:150 final size:152
Alignment explanation
Indices: 14220--15160 Score: 1106
Period size: 150 Copynumber: 6.1 Consensus size: 152
14210 CTGACTTGTC
* * * * * *
14220 GGCTTTGAAAAGTTGCCACTGACTCGTCGGCTTTGAAAAGTTGCCACTGAC-T-TGTGGGCTTGG
1 GGCTTTGAAAGGTTGCCACTAACTTGTGGGCTTTGAAAAGTTGCCACCGACTTGTGTGGGCTTTG
* *
14283 AAAAGATGCCACCGACTTGTGTGGGTTTTGAAATGGGTTGCCACCAACTTGTGTGGGCTATGAAA
66 AAAAGATGCCACCGACTTGTGTGGGCTTTGAAATGGGTTGCCACCAACTTGTGTGGGCTTTGAAA
14348 TGAGTTGCCACCAACTTGTGTG
131 TGAGTTGCCACCAACTTGTGTG
* * * * * * * ** *
14370 GGCATTGAAAGGATACCACTGACTTGTGGGCTTTGAAAGGGTACCACTAAC-T-TGTGGGCTTTA
1 GGCTTTGAAAGGTTGCCACTAACTTGTGGGCTTTGAAAAGTTGCCACCGACTTGTGTGGGCTTTG
* * *
14433 AAAAGATGCCACCGACTTGTGTGGGCTTTGAAATGGGCTACCACCAACTTGTGTGGGCTATGAAA
66 AAAAGATGCCACCGACTTGTGTGGGCTTTGAAATGGGTTGCCACCAACTTGTGTGGGCTTTGAAA
14498 TGAGTTGCCACCAACTTGTGTG
131 TGAGTTGCCACCAACTTGTGTG
* * * * * * *
14520 GGCATTGAAAGGTCGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGTC-T-TGTGGGCTTTG
1 GGCTTTGAAAGGTTGCCACTAACTTGTGGGCTTTGAAAAGTTGCCACCGACTTGTGTGGGCTTTG
* *
14583 AAAAGATGCCACCGACTTGTATGGGCTTTGAAATGGGTTGTCACCAACTTGTGTGGGCTTTGAAA
66 AAAAGATGCCACCGACTTGTGTGGGCTTTGAAATGGGTTGCCACCAACTTGTGTGGGCTTTGAAA
14648 TGAGTTGCCACCAACTTGTGTG
131 TGAGTTGCCACCAACTTGTGTG
* * * * *
14670 GACTTTGAAATGAGTTGCCACCAACTTGTGTAGGCTTTCAAATGGGTTGCCACCAACTTGTGTGG
1 GGCTTTGAAA-G-GTTGCCACTAACTTGTG--GGCTTTGAAA--AGTTGCCACCGACTTGTGTGG
* * * * * * *
14735 GCTTTCAAATAGGTTGTCACCAAATTGTGTGGGCTTTGAAATAGGTTGCCACCAACTTATGTGGG
60 GCTTTGAAA-A-GATGCCACCGACTTGTGTGGGCTTTGAAATGGGTTGCCACCAACTTGTGTGGG
* *
14800 CTTTCAAATGAGTTGCCACCGACTTGTGTG
123 CTTTGAAATGAGTTGCCACCAACTTGTGTG
* *
14830 GGCTTTGAAAGGGTGCCACTAACTTGTGGGCTTTGAAAAGATGCCACCGACTTGTGTGGGCTTTG
1 GGCTTTGAAAGGTTGCCACTAACTTGTGGGCTTTGAAAAGTTGCCACCGACTTGTGTGGGCTTTG
* * * * * * *
14895 AAATGGGTTGCCACCAACTTGTGTGGACTTTGAAATGAGTTGCAACCGACTTGTGTGGGCTTTGA
66 AAA--AGATGCCACCGACTTGTGTGGGCTTTGAAATGGGTTGCCACCAACTTGTGTGGGCTTTGA
*
14960 AATGGGTTGCCACCAACTTGTGTG
129 AATGAGTTGCCACCAACTTGTGTG
* *
14984 GGCTTTGAAATAGGTTGCCACCAACTTGTGTGGGCTTTCAAATGAGTTGCCACCGACTTGTGTGG
1 GGCTTTG-AA-AGGTTGCCACTAAC-T-TGTGGGCTTTGAAA--AGTTGCCACCGACTTGTGTGG
* * * *
15049 GCTTTGAAAGGGTGCCACCGACTTGTGTGGGCTTTGAAA-GGG-TGCCACCCACTTGTGTAGGCT
60 GCTTTGAAAAGATGCCACCGACTTGTGTGGGCTTTGAAATGGGTTGCCACCAACTTGTGTGGGCT
* *
15112 TTGAAATGGGTTGCCACTAACTTGTGTG
125 TTGAAATGAGTTGCCACCAACTTGTGTG
15140 GGCTTTGAAATGAGTTGCCAC
1 GGCTTTGAAA-G-GTTGCCAC
15161 CGATGAATAA
Statistics
Matches: 691, Mismatches: 81, Indels: 32
0.86 0.10 0.04
Matches are distributed among these distances:
150 281 0.41
151 1 0.00
152 14 0.02
154 115 0.17
155 5 0.01
156 90 0.13
157 4 0.01
158 68 0.10
159 2 0.00
160 111 0.16
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.30
Consensus pattern (152 bp):
GGCTTTGAAAGGTTGCCACTAACTTGTGGGCTTTGAAAAGTTGCCACCGACTTGTGTGGGCTTTG
AAAAGATGCCACCGACTTGTGTGGGCTTTGAAATGGGTTGCCACCAACTTGTGTGGGCTTTGAAA
TGAGTTGCCACCAACTTGTGTG
Found at i:14949 original size:282 final size:275
Alignment explanation
Indices: 14248--15163 Score: 1084
Period size: 282 Copynumber: 3.3 Consensus size: 275
14238 CTGACTCGTC
* * * * * ** *
14248 GGCTTTGAAAAGTTGCCACTGAC-T-TGTGGGCTTGGAAAAGATGCCACCGACTTGTGTGGGTTT
1 GGCTTTGAAAGGTTGCCACCGACTTGTGTGGGCTTTGAAAGGGTGCCACTAAC-T-TGTGGGCTT
* * * * * *
14311 TGAAATGGGTTGCCACCAACTTGTGTGGGCTATGAAATGAGTTGCCACCAACTTGTGTGGGCATT
64 TGAAA--AGATGCCACCGACTTGTGTGGGCTTTGAAATGGGTTGCCACCAACTTGTGTGGGCTTT
* * * * * *
14376 GAAA-G-GATACCACTGACTTGTG-GGCTTTGAAA-GGGTACCACTAACTTGTG-GGCTTTAAA-
127 GAAATGAGTTGCCACCGACTTGTGTGGCTTTGAAATGGTTGCCACCAACTTGTGTGGCTTTAAAT
* * * * * * *
14435 AAGATGCCACCGACTTGTGTGGGCTTTGAAATGGGCTACCACCAACTTGTGTGGGCTATGAAAT-
192 AGGTTGCCACCAACTTGTGTGGGCTTTCAAAT-GGTTGCCACCAACTTGTGTGGGCTTTGAAATA
14499 GAGTTGCCACCAACTTGTGTG
256 G-GTTGCCACCAACTTGTGTG
* * * **
14520 GGCATTGAAAGGTCGCCACTGAC-T-TGTGGGCTTTGAAAGGGTGCCACTGTCTTGTGGGCTTTG
1 GGCTTTGAAAGGTTGCCACCGACTTGTGTGGGCTTTGAAAGGGTGCCACTAACTTGTGGGCTTTG
* *
14583 AAAAGATGCCACCGACTTGTATGGGCTTTGAAATGGGTTGTCACCAACTTGTGTGGGCTTTGAAA
66 AAAAGATGCCACCGACTTGTGTGGGCTTTGAAATGGGTTGCCACCAACTTGTGTGGGCTTTGAAA
*
14648 TGAGTTGCCACCAACTTGTGTGGACTTTGAAATGAGTTGCCACCAACTTGTGTAGGCTTTCAAAT
131 TGAGTTGCCACCGACTTGTGTGG-CTTTGAAATG-GTTGCCACCAACTTGTGT-GGCTTT-AAAT
* * *
14713 GGGTTGCCACCAACTTGTGTGGGCTTTCAAATAGGTTGTCACCAAATTGTGTGGGCTTTGAAATA
192 AGGTTGCCACCAACTTGTGTGGGCTTTCAAAT-GGTTGCCACCAACTTGTGTGGGCTTTGAAATA
*
14778 GGTTGCCACCAACTTATGTG
256 GGTTGCCACCAACTTGTGTG
*
14798 GGCTTTCAAATGAGTTGCCACCGACTTGTGTGGGCTTTGAAAGGGTGCCACTAACTTGTGGGCTT
1 GGCTTTGAAA-G-GTTGCCACCGACTTGTGTGGGCTTTGAAAGGGTGCCACTAACTTGTGGGCTT
*
14863 TGAAAAGATGCCACCGACTTGTGTGGGCTTTGAAATGGGTTGCCACCAACTTGTGTGGACTTTGA
64 TGAAAAGATGCCACCGACTTGTGTGGGCTTTGAAATGGGTTGCCACCAACTTGTGTGGGCTTTGA
*
14928 AATGAGTTGCAACCGACTTGTGTGGGCTTTGAAATGGGTTGCCACCAACTTGTGTGGGCTTTGAA
129 AATGAGTTGCCACCGACTTGTGT-GGCTTTGAAAT-GGTTGCCACCAACTTGTGT-GGCTTT-AA
*
14993 ATAGGTTGCCACCAACTTGTGTGGGCTTTCAAATGAGTTGCCACCGACTTGTGTGGGCTTTG-AA
190 ATAGGTTGCCACCAACTTGTGTGGGCTTTCAAATG-GTTGCCACCAACTTGTGTGGGCTTTGAAA
* *
15057 -AGGGTGCCACCGACTTGTGTG
254 TAGGTTGCCACCAACTTGTGTG
* * *
15078 GGCTTTGAAAGGGTGCCACCCACTTGTGTAGGCTTTGAAATGGGTTGCCACTAACTTGTGTGGGC
1 GGCTTTGAAAGGTTGCCACCGACTTGTGTGGGCTTTGAAA-GGG-TGCCACTAAC-T-TGTGGGC
*
15143 TTTGAAATGAGTTGCCACCGA
62 TTTGAAA--AGATGCCACCGA
15164 TGAATAAAAT
Statistics
Matches: 559, Mismatches: 61, Indels: 36
0.85 0.09 0.05
Matches are distributed among these distances:
268 54 0.10
269 1 0.00
270 26 0.05
271 3 0.01
272 51 0.09
273 1 0.00
274 14 0.03
276 6 0.01
277 3 0.01
278 105 0.19
279 6 0.01
280 47 0.08
281 5 0.01
282 223 0.40
283 3 0.01
284 11 0.02
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.30
Consensus pattern (275 bp):
GGCTTTGAAAGGTTGCCACCGACTTGTGTGGGCTTTGAAAGGGTGCCACTAACTTGTGGGCTTTG
AAAAGATGCCACCGACTTGTGTGGGCTTTGAAATGGGTTGCCACCAACTTGTGTGGGCTTTGAAA
TGAGTTGCCACCGACTTGTGTGGCTTTGAAATGGTTGCCACCAACTTGTGTGGCTTTAAATAGGT
TGCCACCAACTTGTGTGGGCTTTCAAATGGTTGCCACCAACTTGTGTGGGCTTTGAAATAGGTTG
CCACCAACTTGTGTG
Found at i:26851 original size:2 final size:2
Alignment explanation
Indices: 26844--26869 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
26834 TCGAATTTTA
26844 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
26870 TTGTATGTCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:28293 original size:12 final size:12
Alignment explanation
Indices: 28267--28327 Score: 68
Period size: 13 Copynumber: 4.8 Consensus size: 12
28257 TTTTAAAAGA
28267 TAAAATATTATTT
1 TAAAA-ATTATTT
28280 TAAAAATTAGTTT
1 TAAAAATTA-TTT
*
28293 AAAAAATTATTGT
1 TAAAAATTATT-T
* *
28306 TAATAATCATTT
1 TAAAAATTATTT
28318 TAAAAATTAT
1 TAAAAATTAT
28328 ACTTATTTAA
Statistics
Matches: 40, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
12 15 0.38
13 25 0.62
ACGTcount: A:0.49, C:0.02, G:0.03, T:0.46
Consensus pattern (12 bp):
TAAAAATTATTT
Found at i:28295 original size:25 final size:25
Alignment explanation
Indices: 28267--28327 Score: 70
Period size: 25 Copynumber: 2.4 Consensus size: 25
28257 TTTTAAAAGA
*
28267 TAAAATATTATT-TTAAAAATTAGTT
1 TAAAA-ATTATTGTTAAAAATCAGTT
* *
28292 TAAAAAATTATTGTTAATAATCATTT
1 T-AAAAATTATTGTTAAAAATCAGTT
28318 TAAAAATTAT
1 TAAAAATTAT
28328 ACTTATTTAA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
25 16 0.52
26 15 0.48
ACGTcount: A:0.49, C:0.02, G:0.03, T:0.46
Consensus pattern (25 bp):
TAAAAATTATTGTTAAAAATCAGTT
Found at i:29656 original size:29 final size:28
Alignment explanation
Indices: 29602--29657 Score: 69
Period size: 29 Copynumber: 2.0 Consensus size: 28
29592 ATTAATATAA
* *
29602 AAATAAAAATTTTATTTTTATTATTTAT
1 AAATAAAAATTTAATTTTTATAATTTAT
29630 AAATAATAAATATTAATTTTTA-AATTTA
1 AAATAA-AAAT-TTAATTTTTATAATTTA
29658 AATGAAAAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
28 6 0.25
29 9 0.38
30 9 0.38
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (28 bp):
AAATAAAAATTTAATTTTTATAATTTAT
Found at i:30588 original size:22 final size:22
Alignment explanation
Indices: 30539--30589 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 22
30529 ATATAAGTAT
* *
30539 AATATAATATGAATATAATAAT
1 AATATAATATGAAAATAATAAA
* * *
30561 ATTATAATTTTAAAATAATAAA
1 AATATAATATGAAAATAATAAA
30583 AATATAA
1 AATATAA
30590 ATATAGTAAG
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.37
Consensus pattern (22 bp):
AATATAATATGAAAATAATAAA
Found at i:31591 original size:2 final size:2
Alignment explanation
Indices: 31584--31612 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
31574 ATTGAATTGC
31584 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
31613 AAAGAGAAGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:33857 original size:2 final size:2
Alignment explanation
Indices: 33850--33878 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
33840 TAAAGTATTC
33850 AT AT AT AT AT AT AT AT AT AT -T AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
33879 TAAGTACTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 25 0.96
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:39434 original size:27 final size:27
Alignment explanation
Indices: 39400--39475 Score: 91
Period size: 27 Copynumber: 2.9 Consensus size: 27
39390 AAAGCCACCT
* **
39400 TTTGTATTTGTCAACAATGGTGGTTAC
1 TTTGTATTTGTCAAAAATAATGGTTAC
*
39427 TTTGTATTTGTCAAAAATAATGGTTCC
1 TTTGTATTTGTCAAAAATAATGGTTAC
* *
39454 TTT-TAGTTGTCAAAAATTATGG
1 TTTGTATTTGTCAAAAATAATGG
39476 CTTATTGTTT
Statistics
Matches: 43, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
26 17 0.40
27 26 0.60
ACGTcount: A:0.28, C:0.09, G:0.18, T:0.45
Consensus pattern (27 bp):
TTTGTATTTGTCAAAAATAATGGTTAC
Found at i:39571 original size:13 final size:13
Alignment explanation
Indices: 39553--39626 Score: 55
Period size: 13 Copynumber: 5.7 Consensus size: 13
39543 AGGCTCCCTC
39553 ATCCCTCTTAAGT
1 ATCCCTCTTAAGT
*
39566 ATCCCTCTTAAGC
1 ATCCCTCTTAAGT
* *
39579 ATCTCT-TTCAAGC
1 ATCCCTCTT-AAGT
*
39592 ATCCCTCTCT-TGT
1 ATCCCTCT-TAAGT
*
39605 ATCCCTCTCT-TGT
1 ATCCCTCT-TAAGT
39618 ATCCCTCTT
1 ATCCCTCTT
39627 CAATTCTTTC
Statistics
Matches: 53, Mismatches: 5, Indels: 7
0.82 0.08 0.11
Matches are distributed among these distances:
12 3 0.06
13 48 0.91
14 1 0.02
15 1 0.02
ACGTcount: A:0.16, C:0.36, G:0.07, T:0.41
Consensus pattern (13 bp):
ATCCCTCTTAAGT
Found at i:39626 original size:11 final size:13
Alignment explanation
Indices: 39592--39625 Score: 68
Period size: 13 Copynumber: 2.6 Consensus size: 13
39582 TCTTTCAAGC
39592 ATCCCTCTCTTGT
1 ATCCCTCTCTTGT
39605 ATCCCTCTCTTGT
1 ATCCCTCTCTTGT
39618 ATCCCTCT
1 ATCCCTCT
39626 TCAATTCTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.09, C:0.41, G:0.06, T:0.44
Consensus pattern (13 bp):
ATCCCTCTCTTGT
Found at i:41347 original size:204 final size:205
Alignment explanation
Indices: 40993--41383 Score: 721
Period size: 204 Copynumber: 1.9 Consensus size: 205
40983 CTAGTTTGAA
40993 GAAAAATCTCATCTCGTTGGGAGCCTTAGAATCCAAAGGCTCAATCATCACTTTAAGAGATGGAG
1 GAAAAATCTCATCTCGTTGGGAGCCTTAGAATCCAAAGGCTCAATCATCACTTTAAGAGATGGAG
*
41058 TTTTGATGGTCACATCTGGCGCACTCGTGATAATGAAGGGCATCAAAAAAAATAACTTGTATTAC
66 TTTTGAAGGTCACATCTGGCGCACTCGTGATAATGAAGGGCATCAAAAAAAATAACTTGTATTAC
41123 TATCAGGATAGTACAGTTATTGGAGCACTAGCAGCAACTTCCGATGGTCAC-ATTTGGCGCACTC
131 TATCAGGATAGTACAGTTATTGGAGCACTAGCAGCAACTTCCGATGGTCACAATTTGGCGCACTC
41187 GTGATAATTT
196 GTGATAATTT
41197 GAAAAATCTCATCTCGTTGGGAGCCTTAGAATCCAAAGGCTCAATCATCACTTTAAGAGATGGAG
1 GAAAAATCTCATCTCGTTGGGAGCCTTAGAATCCAAAGGCTCAATCATCACTTTAAGAGATGGAG
41262 TTTTGAAGGTCACATCTGGCGCACTCGTGATAATGAAGGGCATCAAAAAAAATAACTTGTATTAC
66 TTTTGAAGGTCACATCTGGCGCACTCGTGATAATGAAGGGCATCAAAAAAAATAACTTGTATTAC
* * * * *
41327 TATCAGGGTAGTATAGTTATTGGAGCAGTAGTAGCAACTTCCGATGGTGACAATTTG
131 TATCAGGATAGTACAGTTATTGGAGCACTAGCAGCAACTTCCGATGGTCACAATTTG
41384 AATTCATCCT
Statistics
Matches: 180, Mismatches: 6, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
204 175 0.97
205 5 0.03
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.28
Consensus pattern (205 bp):
GAAAAATCTCATCTCGTTGGGAGCCTTAGAATCCAAAGGCTCAATCATCACTTTAAGAGATGGAG
TTTTGAAGGTCACATCTGGCGCACTCGTGATAATGAAGGGCATCAAAAAAAATAACTTGTATTAC
TATCAGGATAGTACAGTTATTGGAGCACTAGCAGCAACTTCCGATGGTCACAATTTGGCGCACTC
GTGATAATTT
Found at i:44240 original size:27 final size:27
Alignment explanation
Indices: 44209--44286 Score: 95
Period size: 27 Copynumber: 2.9 Consensus size: 27
44199 AAAAGCCACT
* *
44209 CTTTGTGTTTGTCAACAATGGTGGTTA
1 CTTTGTGTTTGTCAAAAATGATGGTTA
* *
44236 CTTTGTATTTGTCAAAAATGATGGTTC
1 CTTTGTGTTTGTCAAAAATGATGGTTA
*
44263 CTTT-TAGTTTGTCAAAAATTATGG
1 CTTTGT-GTTTGTCAAAAATGATGG
44287 CTTATTGTTT
Statistics
Matches: 44, Mismatches: 6, Indels: 2
0.85 0.12 0.04
Matches are distributed among these distances:
26 1 0.02
27 43 0.98
ACGTcount: A:0.24, C:0.10, G:0.21, T:0.45
Consensus pattern (27 bp):
CTTTGTGTTTGTCAAAAATGATGGTTA
Found at i:44301 original size:24 final size:24
Alignment explanation
Indices: 44243--44312 Score: 72
Period size: 27 Copynumber: 2.8 Consensus size: 24
44233 TTACTTTGTA
*
44243 TTTGTCAAAAATGATGGTTCCTTTTAG
1 TTTGTCAAAAATTATGG---CTTTTAG
44270 TTTGTCAAAAATTATGGCTTATT-G
1 TTTGTCAAAAATTATGGCTT-TTAG
44294 TTTGTC-AAAATTAGTGGCT
1 TTTGTCAAAAATTA-TGGCT
44313 AATTTTTATT
Statistics
Matches: 40, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
23 7 0.17
24 15 0.38
25 2 0.05
27 16 0.40
ACGTcount: A:0.27, C:0.10, G:0.19, T:0.44
Consensus pattern (24 bp):
TTTGTCAAAAATTATGGCTTTTAG
Found at i:44425 original size:11 final size:13
Alignment explanation
Indices: 44391--44424 Score: 68
Period size: 13 Copynumber: 2.6 Consensus size: 13
44381 TCTCTCAAGC
44391 ATCCCTCTCTTGT
1 ATCCCTCTCTTGT
44404 ATCCCTCTCTTGT
1 ATCCCTCTCTTGT
44417 ATCCCTCT
1 ATCCCTCT
44425 TCAATTCTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.09, C:0.41, G:0.06, T:0.44
Consensus pattern (13 bp):
ATCCCTCTCTTGT
Found at i:45377 original size:17 final size:17
Alignment explanation
Indices: 45351--45387 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
45341 CATGCTACGC
45351 TTGAAGTCACGAGCCAT
1 TTGAAGTCACGAGCCAT
*
45368 TTGAATTCACGAGCCAT
1 TTGAAGTCACGAGCCAT
45385 TTG
1 TTG
45388 GGGGTATTCT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.30
Consensus pattern (17 bp):
TTGAAGTCACGAGCCAT
Found at i:48066 original size:16 final size:16
Alignment explanation
Indices: 48039--48078 Score: 64
Period size: 16 Copynumber: 2.6 Consensus size: 16
48029 CGCGCTGTTT
48039 GTTTCA-CCTTATAAA
1 GTTTCAGCCTTATAAA
48054 GTTTCAGCCTTATAAA
1 GTTTCAGCCTTATAAA
*
48070 GTTGCAGCC
1 GTTTCAGCC
48079 AAACTTGACT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
15 6 0.26
16 17 0.74
ACGTcount: A:0.28, C:0.23, G:0.15, T:0.35
Consensus pattern (16 bp):
GTTTCAGCCTTATAAA
Found at i:48519 original size:14 final size:14
Alignment explanation
Indices: 48500--48622 Score: 70
Period size: 14 Copynumber: 9.3 Consensus size: 14
48490 TAGACATTAA
48500 ATATTAATATATTT
1 ATATTAATATATTT
48514 ATATTAATAT-TTAT
1 ATATTAATATATT-T
* *
48528 ATGTTATTA-ATTT
1 ATATTAATATATTT
*
48541 ATATT-ATATA--A
1 ATATTAATATATTT
*
48552 ATTTTAATATATTT
1 ATATTAATATATTT
48566 AT-TTAATTATATTAT
1 ATATTAA-TATATT-T
*
48581 ATTTTAAT-TATTT
1 ATATTAATATATTT
48594 -TATT--TATA-TT
1 ATATTAATATATTT
* *
48604 ATATTTATGTATATT
1 ATATTAATATAT-TT
48619 ATAT
1 ATAT
48623 ATAGCCGTAA
Statistics
Matches: 85, Mismatches: 9, Indels: 29
0.69 0.07 0.24
Matches are distributed among these distances:
10 3 0.04
11 10 0.12
12 10 0.12
13 16 0.19
14 32 0.38
15 10 0.12
16 4 0.05
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (14 bp):
ATATTAATATATTT
Found at i:48524 original size:20 final size:18
Alignment explanation
Indices: 48507--48611 Score: 68
Period size: 15 Copynumber: 6.2 Consensus size: 18
48497 TAAATATTAA
48507 TATATTTATATTAATATT
1 TATATTTATATTAATATT
*
48525 TATATGT-TATT-A-ATT
1 TATATTTATATTAATATT
* *
48540 TATA-TTATATAAATTTT
1 TATATTTATATTAATATT
48557 AATATATTTAT-TTAATTATAT
1 --TATATTTATATTAA-TAT-T
*
48578 TATATTT-TA--ATTATT
1 TATATTTATATTAATATT
48593 T-TATTTATATT-ATATT
1 TATATTTATATTAATATT
48609 TAT
1 TAT
48612 GTATATTATA
Statistics
Matches: 66, Mismatches: 8, Indels: 27
0.65 0.08 0.27
Matches are distributed among these distances:
14 6 0.09
15 14 0.21
16 10 0.15
17 8 0.12
18 7 0.11
19 14 0.21
20 6 0.09
21 1 0.02
ACGTcount: A:0.37, C:0.00, G:0.01, T:0.62
Consensus pattern (18 bp):
TATATTTATATTAATATT
Found at i:48568 original size:33 final size:32
Alignment explanation
Indices: 48501--48582 Score: 89
Period size: 33 Copynumber: 2.6 Consensus size: 32
48491 AGACATTAAA
* *
48501 TATTAATATAT-TTATATTAATATTTATATGT
1 TATTAATTTATATTATATAAATATTTATATGT
*
48532 TATTAATTTATATTATATAAAT-TTTAATATATT
1 TATTAATTTATATTATATAAATATTT-ATAT-GT
48565 TATTTAA-TTATATTATAT
1 TA-TTAATTTATATTATAT
48583 TTTAATTATT
Statistics
Matches: 44, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
31 13 0.30
32 13 0.30
33 14 0.32
34 4 0.09
ACGTcount: A:0.40, C:0.00, G:0.01, T:0.59
Consensus pattern (32 bp):
TATTAATTTATATTATATAAATATTTATATGT
Found at i:48620 original size:20 final size:18
Alignment explanation
Indices: 48507--48622 Score: 71
Period size: 20 Copynumber: 6.3 Consensus size: 18
48497 TAAATATTAA
*
48507 TATATTTATATTAATAT-T
1 TATATTTAT-TTATTATAT
*
48525 TATATGTTATTAATTTATAT
1 TATAT-TTATTTA-TTATAT
* *
48545 TATA-TAAATT-TTA-A-
1 TATATTTATTTATTATAT
48559 TATATTTATTTAATTATAT
1 TATATTTATTT-ATTATAT
* *
48578 TATATTTTAATTATTTTATT
1 TATA-TTTATTTATTATA-T
48598 TATATTATATTTATGTATAT
1 TATATT-TATTTAT-TATAT
48618 TATAT
1 TATAT
48623 ATAGCCGTAA
Statistics
Matches: 75, Mismatches: 11, Indels: 22
0.69 0.10 0.20
Matches are distributed among these distances:
14 4 0.05
15 5 0.07
16 3 0.04
17 3 0.04
18 11 0.15
19 18 0.24
20 28 0.37
21 3 0.04
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (18 bp):
TATATTTATTTATTATAT
Found at i:49289 original size:27 final size:28
Alignment explanation
Indices: 49254--49326 Score: 96
Period size: 27 Copynumber: 2.7 Consensus size: 28
49244 AACCACTCAT
*
49254 TATTTGTCAAAAATTGTGA-TTACTTTA
1 TATTTGTCAAAAATGGTGAGTTACTTTA
* * *
49281 TGTTTGTCAAAAATGGT-AGTTTCTTTT
1 TATTTGTCAAAAATGGTGAGTTACTTTA
49308 TATTTGTCAAAAATGGTGA
1 TATTTGTCAAAAATGGTGA
49327 CATGTTGTTT
Statistics
Matches: 39, Mismatches: 5, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
26 1 0.03
27 37 0.95
28 1 0.03
ACGTcount: A:0.30, C:0.07, G:0.16, T:0.47
Consensus pattern (28 bp):
TATTTGTCAAAAATGGTGAGTTACTTTA
Found at i:53842 original size:27 final size:27
Alignment explanation
Indices: 53807--53906 Score: 137
Period size: 27 Copynumber: 3.7 Consensus size: 27
53797 AAGTACCCAT
*
53807 TGTTTGTCAAAAATTGTGGTTACTTTG
1 TGTTTGTCAAAAATGGTGGTTACTTTG
*
53834 TGTTTGTCAAAAATTGTGGTTACTTTG
1 TGTTTGTCAAAAATGGTGGTTACTTTG
* * *
53861 TGTTTGTCAAAAATGGTGATTTCTTTT
1 TGTTTGTCAAAAATGGTGGTTACTTTG
* *
53888 TATTTGCCAAAAATGGTGG
1 TGTTTGTCAAAAATGGTGG
53907 CATGTTGTTT
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 66 1.00
ACGTcount: A:0.24, C:0.08, G:0.22, T:0.46
Consensus pattern (27 bp):
TGTTTGTCAAAAATGGTGGTTACTTTG
Found at i:54434 original size:23 final size:23
Alignment explanation
Indices: 54408--54472 Score: 70
Period size: 23 Copynumber: 3.1 Consensus size: 23
54398 TTGATGATTG
54408 ATTGAGTTTATAGATTTTATTTT
1 ATTGAGTTTATAGATTTTATTTT
* *
54431 ATTGAG-TT-T-GA--TGA-TTG
1 ATTGAGTTTATAGATTTTATTTT
54448 ATTGAGTTTATAGATTTTATTTT
1 ATTGAGTTTATAGATTTTATTTT
54471 AT
1 AT
54473 GTTAAAAGGT
Statistics
Matches: 32, Mismatches: 4, Indels: 12
0.67 0.08 0.25
Matches are distributed among these distances:
17 8 0.25
18 4 0.12
19 1 0.03
20 4 0.12
21 1 0.03
22 4 0.12
23 10 0.31
ACGTcount: A:0.26, C:0.00, G:0.17, T:0.57
Consensus pattern (23 bp):
ATTGAGTTTATAGATTTTATTTT
Found at i:54441 original size:40 final size:40
Alignment explanation
Indices: 54381--54472 Score: 166
Period size: 40 Copynumber: 2.3 Consensus size: 40
54371 AATCTTTGAT
* *
54381 ATTTCATTTTAGTGAGTTTGATGATTGATTGAGTTTATAG
1 ATTTTATTTTATTGAGTTTGATGATTGATTGAGTTTATAG
54421 ATTTTATTTTATTGAGTTTGATGATTGATTGAGTTTATAG
1 ATTTTATTTTATTGAGTTTGATGATTGATTGAGTTTATAG
54461 ATTTTATTTTAT
1 ATTTTATTTTAT
54473 GTTAAAAGGT
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 50 1.00
ACGTcount: A:0.25, C:0.01, G:0.18, T:0.55
Consensus pattern (40 bp):
ATTTTATTTTATTGAGTTTGATGATTGATTGAGTTTATAG
Found at i:54463 original size:17 final size:17
Alignment explanation
Indices: 54393--54456 Score: 56
Period size: 17 Copynumber: 3.4 Consensus size: 17
54383 TTCATTTTAG
54393 TGAGTTTGATGATTGAT
1 TGAGTTTGATGATTGAT
* *
54410 TGAGTTTATAGATTTTATTTTAT
1 TGAG-TT-T-GA--TGA-TTGAT
54433 TGAGTTTGATGATTGAT
1 TGAGTTTGATGATTGAT
54450 TGAGTTT
1 TGAGTTT
54457 ATAGATTTTA
Statistics
Matches: 37, Mismatches: 4, Indels: 12
0.70 0.08 0.23
Matches are distributed among these distances:
17 15 0.41
18 4 0.11
19 1 0.03
20 4 0.11
21 1 0.03
22 4 0.11
23 8 0.22
ACGTcount: A:0.23, C:0.00, G:0.23, T:0.53
Consensus pattern (17 bp):
TGAGTTTGATGATTGAT
Found at i:54563 original size:21 final size:20
Alignment explanation
Indices: 54523--54563 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
54513 GATTTTAATG
**
54523 ATTTATTTAATTTTTGTTAT
1 ATTTATTTAATTTTCATTAT
54543 ATTTATGTTAATTTTCATTAT
1 ATTTAT-TTAATTTTCATTAT
54564 GATGATTTGT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.27, C:0.02, G:0.05, T:0.66
Consensus pattern (20 bp):
ATTTATTTAATTTTCATTAT
Found at i:58389 original size:1 final size:1
Alignment explanation
Indices: 58383--58465 Score: 67
Period size: 1 Copynumber: 83.0 Consensus size: 1
58373 AAATCTTCAC
* * ** * * * **
58383 TTTTTTTTTTGTTTTTTTTTTCTTTTTCCTTTTGTTTGTTTTTTTTTTTCTTTTTCCTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* *
58448 GTTTTGTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTT
58466 CCAATTGCCA
Statistics
Matches: 64, Mismatches: 18, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
1 64 1.00
ACGTcount: A:0.00, C:0.07, G:0.06, T:0.87
Consensus pattern (1 bp):
T
Found at i:58415 original size:23 final size:22
Alignment explanation
Indices: 58389--58452 Score: 74
Period size: 22 Copynumber: 2.9 Consensus size: 22
58379 TCACTTTTTT
58389 TTTTGTTTTTTTTTTCTTTTTCC
1 TTTTGTTTTTTTTTT-TTTTTCC
* *
58412 TTTTGTTTGTTTTTTTTTTTCT
1 TTTTGTTTTTTTTTTTTTTTCC
** *
58434 TTTTCCTTTTTTTTGTTTT
1 TTTTGTTTTTTTTTTTTTT
58453 GTTTTTTTTT
Statistics
Matches: 35, Mismatches: 6, Indels: 1
0.83 0.14 0.02
Matches are distributed among these distances:
22 21 0.60
23 14 0.40
ACGTcount: A:0.00, C:0.09, G:0.06, T:0.84
Consensus pattern (22 bp):
TTTTGTTTTTTTTTTTTTTTCC
Found at i:58426 original size:28 final size:28
Alignment explanation
Indices: 58385--58467 Score: 134
Period size: 28 Copynumber: 3.0 Consensus size: 28
58375 ATCTTCACTT
58385 TTTTTTTTG-TTTTTTTTTTCTTTTTCC
1 TTTTTTTTGTTTTTTTTTTTCTTTTTCC
*
58412 TTTTGTTTGTTTTTTTTTTTCTTTTTCC
1 TTTTTTTTGTTTTTTTTTTTCTTTTTCC
58440 TTTTTTTTGTTTTGTTTTTTT-TTTTTCC
1 TTTTTTTTGTTTT-TTTTTTTCTTTTTCC
58468 AATTGCCATG
Statistics
Matches: 52, Mismatches: 2, Indels: 3
0.91 0.04 0.05
Matches are distributed among these distances:
27 8 0.15
28 37 0.71
29 7 0.13
ACGTcount: A:0.00, C:0.10, G:0.06, T:0.84
Consensus pattern (28 bp):
TTTTTTTTGTTTTTTTTTTTCTTTTTCC
Found at i:58437 original size:37 final size:36
Alignment explanation
Indices: 58383--58465 Score: 98
Period size: 38 Copynumber: 2.2 Consensus size: 36
58373 AAATCTTCAC
*
58383 TTTTTTTTTTGT-TTTTTTTTTCTTTTTCCTTTTGTTT
1 TTTTTTTTTTGTCTTTTTCTTT-TTTTT-CTTTTGTTT
*
58420 GTTTTTTTTTT-TCTTTTTCCTTTTTTTTGTTTTGTTT
1 -TTTTTTTTTTGTCTTTTT-CTTTTTTTTCTTTTGTTT
58457 TTTTTTTTT
1 TTTTTTTTT
58466 CCAATTGCCA
Statistics
Matches: 41, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
36 9 0.22
37 9 0.22
38 20 0.49
39 3 0.07
ACGTcount: A:0.00, C:0.07, G:0.06, T:0.87
Consensus pattern (36 bp):
TTTTTTTTTTGTCTTTTTCTTTTTTTTCTTTTGTTT
Found at i:59151 original size:62 final size:62
Alignment explanation
Indices: 59085--59210 Score: 252
Period size: 62 Copynumber: 2.0 Consensus size: 62
59075 AACACAACCT
59085 AAAAACAAAGCTTAAAAAAAATAAAAAATAAATAAATAACAATAAAAGATATGAACATGCCA
1 AAAAACAAAGCTTAAAAAAAATAAAAAATAAATAAATAACAATAAAAGATATGAACATGCCA
59147 AAAAACAAAGCTTAAAAAAAATAAAAAATAAATAAATAACAATAAAAGATATGAACATGCCA
1 AAAAACAAAGCTTAAAAAAAATAAAAAATAAATAAATAACAATAAAAGATATGAACATGCCA
59209 AA
1 AA
59211 GTCCTCCCCC
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
62 64 1.00
ACGTcount: A:0.68, C:0.10, G:0.06, T:0.16
Consensus pattern (62 bp):
AAAAACAAAGCTTAAAAAAAATAAAAAATAAATAAATAACAATAAAAGATATGAACATGCCA
Found at i:75295 original size:20 final size:20
Alignment explanation
Indices: 75221--75295 Score: 78
Period size: 20 Copynumber: 3.6 Consensus size: 20
75211 ACCCAGAATA
* *
75221 TATCGATACAATGAGAAATG
1 TATCGATACATTTAGAAATG
* *
75241 TATCGATTCATTTGAAAACATG
1 TATCGATACATTT-AGAA-ATG
* *
75263 TATCGATATATTTAGTAATG
1 TATCGATACATTTAGAAATG
75283 TATCGATACATTT
1 TATCGATACATTT
75296 CCTTAGCAGT
Statistics
Matches: 44, Mismatches: 9, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
20 25 0.57
21 5 0.11
22 14 0.32
ACGTcount: A:0.37, C:0.11, G:0.15, T:0.37
Consensus pattern (20 bp):
TATCGATACATTTAGAAATG
Found at i:77045 original size:2 final size:2
Alignment explanation
Indices: 77038--77063 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
77028 TCAAATTTTA
77038 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
77064 GTATGTCATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:77956 original size:21 final size:21
Alignment explanation
Indices: 77930--77969 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
77920 TTTGCTTCCT
77930 CTTGAATCTGTGAGATTGTTA
1 CTTGAATCTGTGAGATTGTTA
77951 CTTGAATCTGTGAGATTGT
1 CTTGAATCTGTGAGATTGT
77970 AAGTGCCAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.23, C:0.10, G:0.25, T:0.42
Consensus pattern (21 bp):
CTTGAATCTGTGAGATTGTTA
Found at i:93175 original size:28 final size:29
Alignment explanation
Indices: 93102--93202 Score: 84
Period size: 28 Copynumber: 3.4 Consensus size: 29
93092 TTCATATACT
93102 TATTTATTTA-AAAAAATTATAATTTAAA
1 TATTTATTTATAAAAAATTATAATTTAAA
* *
93130 TATTTATTTATATTAAAATT-T-TTTTAAAA
1 TATTTATTTATA-AAAAATTATAATTT-AAA
* *
93159 TATTTAATTATAAAAAATAATATAATATAAA
1 TATTTATTTATAAAAAAT--TATAATTTAAA
*
93190 -ATTAATTTTATAA
1 TATTTA-TTTATAA
93203 TTAATCTTTT
Statistics
Matches: 57, Mismatches: 8, Indels: 13
0.73 0.10 0.17
Matches are distributed among these distances:
28 18 0.32
29 16 0.28
30 11 0.19
31 10 0.18
32 2 0.04
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (29 bp):
TATTTATTTATAAAAAATTATAATTTAAA
Found at i:93309 original size:19 final size:19
Alignment explanation
Indices: 93282--93357 Score: 57
Period size: 19 Copynumber: 3.8 Consensus size: 19
93272 CTGACACAAA
*
93282 ATTTATATATTTATATTTT
1 ATTTATATAATTATATTTT
* *
93301 ATTTTTATAATTATATTTAAA
1 ATTTATATAATTATATTT--T
*
93322 ATATTATAT-ATT-TATATT
1 AT-TTATATAATTATATTTT
93340 ATTTATATTATATTATAT
1 ATTTATA-TA-ATTATAT
93358 AATAATTATT
Statistics
Matches: 44, Mismatches: 6, Indels: 12
0.71 0.10 0.19
Matches are distributed among these distances:
17 5 0.11
18 3 0.07
19 16 0.36
20 7 0.16
21 8 0.18
22 5 0.11
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (19 bp):
ATTTATATAATTATATTTT
Found at i:93342 original size:39 final size:38
Alignment explanation
Indices: 93279--93400 Score: 126
Period size: 41 Copynumber: 3.1 Consensus size: 38
93269 CTTCTGACAC
93279 AAAAT-TTATATATTTATATTTTATTTTTATAATTATATT-T
1 AAAATATTATATATTTATA--TTA-TTTTAT-ATTATATTAT
93319 AAAATATTATATATTTATATTA-TTTATATTATATTAT
1 AAAATATTATATATTTATATTATTTTATATTATATTAT
* * *
93356 ATAATAATTATTTTATTTATATTATATTCATA-TATATTAT
1 AAAAT-ATTA-TATATTTATATTAT-TTTATATTATATTAT
93396 AAAAT
1 AAAAT
93401 TATATCATAA
Statistics
Matches: 72, Mismatches: 4, Indels: 12
0.82 0.05 0.14
Matches are distributed among these distances:
36 8 0.11
37 10 0.14
38 4 0.06
39 15 0.21
40 17 0.24
41 18 0.25
ACGTcount: A:0.42, C:0.01, G:0.00, T:0.57
Consensus pattern (38 bp):
AAAATATTATATATTTATATTATTTTATATTATATTAT
Found at i:93355 original size:41 final size:39
Alignment explanation
Indices: 93288--93396 Score: 110
Period size: 39 Copynumber: 2.9 Consensus size: 39
93278 CAAAATTTAT
93288 ATATT-TATATTT-TATT-TTTATAATTATA-T-T-TAAA
1 ATATTATATATTTATATTATTTAT-ATTATATTATATAAA
93322 ATATTATATATTTATATTATTTATATTATATTATATAATA
1 ATATTATATATTTATATTATTTATATTATATTATATAA-A
93362 ATTATT-T-TATTTATATTATATTCATA-TATATTATA
1 A-TATTATATATTTATATTAT-TT-ATATTATATTATA
93397 AAATTATATC
Statistics
Matches: 65, Mismatches: 0, Indels: 14
0.82 0.00 0.18
Matches are distributed among these distances:
34 5 0.08
35 7 0.11
36 10 0.15
37 6 0.09
38 1 0.02
39 15 0.23
40 14 0.22
41 7 0.11
ACGTcount: A:0.39, C:0.01, G:0.00, T:0.60
Consensus pattern (39 bp):
ATATTATATATTTATATTATTTATATTATATTATATAAA
Found at i:93365 original size:25 final size:24
Alignment explanation
Indices: 93307--93382 Score: 80
Period size: 25 Copynumber: 3.0 Consensus size: 24
93297 TTTTATTTTT
**
93307 ATAATTATATTTAAAATATTATATA
1 ATAATTAT-TTTATTATATTATATA
*
93332 TTTATATTATTTATATTATATTATATA
1 -ATA-ATTATTT-TATTATATTATATA
93359 ATAATTATTTTATTTATATTATAT
1 ATAATTATTTTA-TTATATTATAT
93383 TCATATATAT
Statistics
Matches: 43, Mismatches: 4, Indels: 7
0.80 0.07 0.13
Matches are distributed among these distances:
24 2 0.05
25 18 0.42
26 6 0.14
27 17 0.40
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (24 bp):
ATAATTATTTTATTATATTATATA
Found at i:93374 original size:30 final size:28
Alignment explanation
Indices: 93322--93389 Score: 93
Period size: 30 Copynumber: 2.4 Consensus size: 28
93312 TATATTTAAA
93322 ATATTATAT-ATTTATATTATTTATATT
1 ATATTATATAATTTATATTATTTATATT
*
93349 ATATTATATAATAATTATTTTATTTATATT
1 ATATTATATAAT--TTATATTATTTATATT
93379 ATATTCATATA
1 ATATT-ATATA
93390 TATTATAAAA
Statistics
Matches: 36, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
27 9 0.25
28 2 0.06
30 20 0.56
31 5 0.14
ACGTcount: A:0.40, C:0.01, G:0.00, T:0.59
Consensus pattern (28 bp):
ATATTATATAATTTATATTATTTATATT
Found at i:93707 original size:18 final size:17
Alignment explanation
Indices: 93694--93734 Score: 68
Period size: 17 Copynumber: 2.5 Consensus size: 17
93684 TTTAATATTT
93694 ATAAAATTTTTAATTAA
1 ATAAAATTTTTAATTAA
93711 ATAAAATTTTT-ATT-A
1 ATAAAATTTTTAATTAA
93726 ATAAAATTT
1 ATAAAATTT
93735 ATTTAAAATA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
15 10 0.42
16 3 0.12
17 11 0.46
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (17 bp):
ATAAAATTTTTAATTAA
Found at i:93730 original size:15 final size:15
Alignment explanation
Indices: 93689--93734 Score: 65
Period size: 15 Copynumber: 2.9 Consensus size: 15
93679 GTTCGTTTAA
*
93689 TATTTATAAAATTTT
1 TATTAATAAAATTTT
93704 TAATTAAATAAAATTTT
1 T-ATT-AATAAAATTTT
93721 TATTAATAAAATTT
1 TATTAATAAAATTT
93735 ATTTAAAATA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
15 11 0.39
16 6 0.21
17 11 0.39
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTAATAAAATTTT
Found at i:93739 original size:17 final size:16
Alignment explanation
Indices: 93689--93739 Score: 59
Period size: 16 Copynumber: 3.1 Consensus size: 16
93679 GTTCGTTTAA
*
93689 TATTTATAAAATTTTT
1 TATTAATAAAATTTTT
*
93705 AATTAAATAAAA-TTTT
1 TATT-AATAAAATTTTT
93721 TATTAATAAAATTTATT
1 TATTAATAAAATTT-TT
93738 TA
1 TA
93740 AAATATTTAA
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
15 7 0.24
16 12 0.41
17 10 0.34
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (16 bp):
TATTAATAAAATTTTT
Found at i:93741 original size:26 final size:26
Alignment explanation
Indices: 93712--93761 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
93702 TTTAATTAAA
* *
93712 TAAAAT-TTTTATTAATAAAATTTATT
1 TAAAATATTTAATAAAT-AAATTTATT
93738 TAAAATATTTAATAAATAAATTTA
1 TAAAATATTTAATAAATAAATTTA
93762 AAATTAAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
26 13 0.62
27 8 0.38
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (26 bp):
TAAAATATTTAATAAATAAATTTATT
Found at i:93754 original size:22 final size:23
Alignment explanation
Indices: 93723--93765 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
93713 AAAATTTTTA
**
93723 TTAATAAAATTTATTTAAAATAT
1 TTAATAAAATAAATTTAAAATAT
93746 TTAAT-AAATAAATTTAAAAT
1 TTAATAAAATAAATTTAAAAT
93766 TAAAATTTAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 13 0.72
23 5 0.28
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (23 bp):
TTAATAAAATAAATTTAAAATAT
Found at i:93760 original size:13 final size:14
Alignment explanation
Indices: 93702--93776 Score: 57
Period size: 13 Copynumber: 5.4 Consensus size: 14
93692 TTATAAAATT
93702 TTTAATTAAATAAAA
1 TTTAA-TAAATAAAA
* *
93717 TTTTTATTAATAAAA
1 -TTTAATAAATAAAA
* * *
93732 TTTATTTAA-AATA
1 TTTAATAAATAAAA
93745 TTTAATAAAT-AAA
1 TTTAATAAATAAAA
*
93758 TTTAA-AATTAAAA
1 TTTAATAAATAAAA
93771 TTTAAT
1 TTTAAT
93777 CATATAAAAA
Statistics
Matches: 47, Mismatches: 9, Indels: 8
0.73 0.14 0.12
Matches are distributed among these distances:
12 3 0.06
13 25 0.53
14 7 0.15
15 8 0.17
16 4 0.09
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (14 bp):
TTTAATAAATAAAA
Found at i:93826 original size:33 final size:33
Alignment explanation
Indices: 93789--93874 Score: 95
Period size: 33 Copynumber: 2.5 Consensus size: 33
93779 TATAAAAAAT
*
93789 TATATAAAATATAAAATA-AATTAAGATATAATA
1 TATATAAAATATAAAA-AGAATTAAAATATAATA
*
93822 TATATAATAT-TAAAAAGTAATTAAAATATAATA
1 TATATAAAATATAAAAAG-AATTAAAATATAATA
93855 TGATATAAAAATAATAAAAA
1 T-ATAT-AAAAT-ATAAAAA
93875 TATACGAATA
Statistics
Matches: 44, Mismatches: 3, Indels: 8
0.80 0.05 0.15
Matches are distributed among these distances:
31 1 0.02
32 5 0.11
33 24 0.55
34 4 0.09
35 4 0.09
37 6 0.14
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (33 bp):
TATATAAAATATAAAAAGAATTAAAATATAATA
Found at i:93874 original size:27 final size:29
Alignment explanation
Indices: 93818--93878 Score: 83
Period size: 27 Copynumber: 2.2 Consensus size: 29
93808 ATTAAGATAT
*
93818 AATAT-ATATAATATTAAAAAGTAATTAA
1 AATATAATATAATATTAAAAAGTAATAAA
*
93846 AATATAATATGATA-TAAAAA-TAATAAA
1 AATATAATATAATATTAAAAAGTAATAAA
93873 AATATA
1 AATATA
93879 CGAATATATA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
27 12 0.40
28 11 0.37
29 7 0.23
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (29 bp):
AATATAATATAATATTAAAAAGTAATAAA
Found at i:93887 original size:27 final size:26
Alignment explanation
Indices: 93821--93890 Score: 72
Period size: 27 Copynumber: 2.6 Consensus size: 26
93811 AAGATATAAT
*
93821 ATATATAATAT-TAAAAAGTAATTAAA
1 ATATA-AATATATAAAAAGTAATAAAA
93847 ATATAATATGATATAAAAA-TAATAAAA
1 ATATAA-AT-ATATAAAAAGTAATAAAA
93874 ATATACGAATATATAAA
1 ATATA--AATATATAAA
93891 TATTTACATA
Statistics
Matches: 38, Mismatches: 1, Indels: 9
0.79 0.02 0.19
Matches are distributed among these distances:
25 1 0.03
26 7 0.18
27 21 0.55
28 8 0.21
29 1 0.03
ACGTcount: A:0.63, C:0.01, G:0.04, T:0.31
Consensus pattern (26 bp):
ATATAAATATATAAAAAGTAATAAAA
Found at i:93954 original size:32 final size:32
Alignment explanation
Indices: 93883--93945 Score: 90
Period size: 32 Copynumber: 1.9 Consensus size: 32
93873 AATATACGAA
*
93883 TATATAAATATTTACATAAAATAAATTATTAG
1 TATATAAATATTTACATAAAATAAAATATTAG
* *
93915 TATATAAATATTTATATAAATTTAAAATATT
1 TATATAAATATTTACATAAA-ATAAAATATT
93946 TTGTATAAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
32 19 0.70
33 8 0.30
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.44
Consensus pattern (32 bp):
TATATAAATATTTACATAAAATAAAATATTAG
Found at i:95400 original size:38 final size:38
Alignment explanation
Indices: 95358--95435 Score: 90
Period size: 38 Copynumber: 2.0 Consensus size: 38
95348 TGCACATGAC
95358 ACGAATATATGTAC-ATAT-AAAAA-TATACATAAAATAAA
1 ACGAAT-TAT-TACTATATAAAAAATTATACA-AAAATAAA
*
95396 ACGAATTATTACTATGTAAAAAATTTATACAAAAATAAA
1 ACGAATTATTACTATATAAAAAA-TTATACAAAAATAAA
95435 A
1 A
95436 TATGTTACAT
Statistics
Matches: 35, Mismatches: 1, Indels: 7
0.81 0.02 0.16
Matches are distributed among these distances:
36 3 0.09
37 6 0.17
38 11 0.31
39 9 0.26
40 6 0.17
ACGTcount: A:0.59, C:0.08, G:0.05, T:0.28
Consensus pattern (38 bp):
ACGAATTATTACTATATAAAAAATTATACAAAAATAAA
Found at i:95483 original size:8 final size:8
Alignment explanation
Indices: 95472--95519 Score: 69
Period size: 8 Copynumber: 5.9 Consensus size: 8
95462 AATACATAAA
95472 TTTTTTTC
1 TTTTTTTC
95480 TTTTTTTC
1 TTTTTTTC
*
95488 TTTCTTTC
1 TTTTTTTC
*
95496 TTTTTTCC
1 TTTTTTTC
95504 TTTTTTTC
1 TTTTTTTC
95512 TCTTTTTT
1 T-TTTTTT
95520 TATATTTTTA
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
8 29 0.83
9 6 0.17
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (8 bp):
TTTTTTTC
Found at i:95618 original size:19 final size:19
Alignment explanation
Indices: 95575--95626 Score: 63
Period size: 19 Copynumber: 2.8 Consensus size: 19
95565 TCAATTAAAT
95575 AAAAT-TTTAAA-AAATAA
1 AAAATATTTAAATAAATAA
95592 AAAATATTTAAATAAATAA
1 AAAATATTTAAATAAATAA
* *
95611 TAATTATTTAATATAA
1 AAAATATTTAA-ATAA
95627 TTTAACTTAA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
17 5 0.17
18 6 0.20
19 15 0.50
20 4 0.13
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (19 bp):
AAAATATTTAAATAAATAA
Found at i:96224 original size:25 final size:23
Alignment explanation
Indices: 96184--96230 Score: 58
Period size: 25 Copynumber: 2.0 Consensus size: 23
96174 AAAGTTAAAT
*
96184 ATAATTAAATTTTATTTCAATAA
1 ATAATTAAATTATATTTCAATAA
*
96207 ATAATTAAAATATATATTTTAATA
1 ATAATT-AAAT-TATATTTCAATA
96231 TGTTATTTAG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 6 0.30
24 4 0.20
25 10 0.50
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (23 bp):
ATAATTAAATTATATTTCAATAA
Found at i:96493 original size:32 final size:32
Alignment explanation
Indices: 96428--96495 Score: 84
Period size: 32 Copynumber: 2.1 Consensus size: 32
96418 TTAAGTAAAT
*
96428 TTTAAATAAAAAATAATTATATTTTTTAAAAAA
1 TTTAAATAAAAAAT-ATTATATTTTTGAAAAAA
* *
96461 TTTAAATAAGAAAT-TTCATATTTTTGACAAAA
1 TTTAAATAAAAAATATT-ATATTTTTGAAAAAA
96493 TTT
1 TTT
96496 TTGATTGGCA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
31 2 0.06
32 16 0.52
33 13 0.42
ACGTcount: A:0.50, C:0.03, G:0.03, T:0.44
Consensus pattern (32 bp):
TTTAAATAAAAAATATTATATTTTTGAAAAAA
Found at i:96979 original size:18 final size:16
Alignment explanation
Indices: 96919--96972 Score: 65
Period size: 16 Copynumber: 3.2 Consensus size: 16
96909 TAATTTGATT
*
96919 TAAAATTAAAATAATA
1 TAAATTTAAAATAATA
96935 TAAATTTAAAAATTAACT-
1 TAAATTT-AAAA-TAA-TA
96953 TAAATTTAAAATAATA
1 TAAATTTAAAATAATA
96969 TAAA
1 TAAA
96973 ATATTAATTA
Statistics
Matches: 33, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
15 1 0.03
16 13 0.39
17 8 0.24
18 10 0.30
19 1 0.03
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (16 bp):
TAAATTTAAAATAATA
Found at i:97003 original size:22 final size:21
Alignment explanation
Indices: 96902--97019 Score: 58
Period size: 21 Copynumber: 5.9 Consensus size: 21
96892 CAACATATAT
96902 TTAAAAATAATT-TGATTTAAAA
1 TTAAAAATAATTAT-ATTT-AAA
*
96924 TT-AAAATAA-TATA---AAT
1 TTAAAAATAATTATATTTAAA
*
96940 TTAAAAATTAACTTAAATTTAAA
1 TTAAAAA-TAA-TTATATTTAAA
* * *
96963 AT-AATATAA-AATA-TT-AA
1 TTAAAAATAATTATATTTAAA
96980 TTAAAAATAACTTATATTTAAA
1 TTAAAAATAA-TTATATTTAAA
* *
97002 TTAAATATAATTTTATTT
1 TTAAAAATAATTATATTT
97020 TAAAAAATTA
Statistics
Matches: 71, Mismatches: 12, Indels: 27
0.65 0.11 0.25
Matches are distributed among these distances:
16 4 0.06
17 7 0.10
18 11 0.15
19 2 0.03
20 8 0.11
21 20 0.28
22 16 0.23
23 3 0.04
ACGTcount: A:0.55, C:0.02, G:0.01, T:0.42
Consensus pattern (21 bp):
TTAAAAATAATTATATTTAAA
Found at i:97023 original size:22 final size:22
Alignment explanation
Indices: 96978--97019 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
96968 ATAAAATATT
96978 AATTAAAAATAACTTATATTTA
1 AATTAAAAATAACTTATATTTA
* *
97000 AATTAAATATAA-TTTTATTT
1 AATTAAAAATAACTTATATTT
97020 TAAAAAATTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (22 bp):
AATTAAAAATAACTTATATTTA
Found at i:97023 original size:39 final size:38
Alignment explanation
Indices: 96899--97025 Score: 125
Period size: 39 Copynumber: 3.3 Consensus size: 38
96889 CAACAACATA
96899 TATTTAAAAATAA-TT-TGATTTAAAATTAAA-ATAATAT
1 TATTTAAAAATAACTTAT-ATTT-AAATTAAATATAATAT
* * * *
96936 AAATTTAAAAATTAACTTAAATTTAAAATAATATAAAATAT
1 -TATTTAAAAA-TAACTTATATTTAAATTAA-ATATAATAT
* *
96977 TAATTAAAAATAACTTATATTTAAATTAAATATAATTT
1 TATTTAAAAATAACTTATATTTAAATTAAATATAATAT
97015 TATTTTAAAAA
1 TA-TTTAAAAA
97026 ATTAATTTAA
Statistics
Matches: 72, Mismatches: 11, Indels: 11
0.77 0.12 0.12
Matches are distributed among these distances:
38 18 0.25
39 33 0.46
40 15 0.21
41 6 0.08
ACGTcount: A:0.56, C:0.02, G:0.01, T:0.42
Consensus pattern (38 bp):
TATTTAAAAATAACTTATATTTAAATTAAATATAATAT
Found at i:97026 original size:40 final size:39
Alignment explanation
Indices: 96899--97053 Score: 117
Period size: 39 Copynumber: 4.0 Consensus size: 39
96889 CAACAACATA
96899 TATTT-AAAAATAA-TT-TGATTTAAAATTAAA-ATAATAT
1 TATTTAAAAAATAACTTAT-ATTT-AAATTAAATATAATAT
* * * * *
96936 AAATTTAAAAATTAACTTAAATTTAAAATAATATAAAATAT
1 -TATTTAAAAAATAACTTATATTTAAATTAA-ATATAATAT
* *
96977 TAATT-AAAAATAACTTATATTTAAATTAAATATAATTT
1 TATTTAAAAAATAACTTATATTTAAATTAAATATAATAT
* * *
97015 TATTTTAAAAAATTAA-TT-TAATAAAAATAAATATAATAT
1 TA-TTTAAAAAA-TAACTTATATTTAAATTAAATATAATAT
97054 AATATAGATA
Statistics
Matches: 92, Mismatches: 17, Indels: 15
0.74 0.14 0.12
Matches are distributed among these distances:
38 13 0.14
39 53 0.58
40 17 0.18
41 9 0.10
ACGTcount: A:0.57, C:0.01, G:0.01, T:0.41
Consensus pattern (39 bp):
TATTTAAAAAATAACTTATATTTAAATTAAATATAATAT
Found at i:97048 original size:79 final size:78
Alignment explanation
Indices: 96902--97050 Score: 180
Period size: 79 Copynumber: 1.9 Consensus size: 78
96892 CAACATATAT
*
96902 TTAAAAATAATTTGATTTAAAATTAAAATAATATAAATTTAAAAATTAACTTAAATTTAAAATAA
1 TTAAAAATAATTTGATTTAAAATTAAAATAATATAAATTTAAAAATTAACTTAAATTAAAAATAA
96967 TATAAAATATTAA
66 TATAAAATATTAA
* * * *
96980 TTAAAAATAACTTAT-ATTT-AAATTAAATATAATTTTATTTTAAAAAATTAA-TTTAA-TAAAA
1 TTAAAAATAA-TT-TGATTTAAAATTAAA-ATAATATAAATTT-AAAAATTAACTTAAATTAAAA
97041 ATAAATATAA
62 AT-AATATAA
97051 TATAATATAG
Statistics
Matches: 61, Mismatches: 5, Indels: 9
0.81 0.07 0.12
Matches are distributed among these distances:
78 24 0.39
79 27 0.44
80 10 0.16
ACGTcount: A:0.58, C:0.01, G:0.01, T:0.40
Consensus pattern (78 bp):
TTAAAAATAATTTGATTTAAAATTAAAATAATATAAATTTAAAAATTAACTTAAATTAAAAATAA
TATAAAATATTAA
Found at i:97738 original size:11 final size:11
Alignment explanation
Indices: 97722--97769 Score: 52
Period size: 11 Copynumber: 4.7 Consensus size: 11
97712 TAATAATTTA
97722 TATATTTATAT
1 TATATTTATAT
97733 TATA-TT-TA-
1 TATATTTATAT
97741 TATATTT-TAT
1 TATATTTATAT
97751 TATA-TTATAAT
1 TATATTTAT-AT
97762 TATATTTA
1 TATATTTA
97770 AAAAAATTTT
Statistics
Matches: 32, Mismatches: 0, Indels: 9
0.78 0.00 0.22
Matches are distributed among these distances:
8 4 0.12
9 8 0.25
10 7 0.22
11 10 0.31
12 3 0.09
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (11 bp):
TATATTTATAT
Found at i:97791 original size:15 final size:15
Alignment explanation
Indices: 97735--97795 Score: 56
Period size: 15 Copynumber: 4.1 Consensus size: 15
97725 ATTTATATTA
97735 TATTTATAT--ATTT
1 TATTTATATAAATTT
*
97748 TA-TTATATTATAATTA
1 TATTTATA-TA-AATTT
* *
97764 TATTTAAAAAAATTT
1 TATTTATATAAATTT
97779 TATTTATATAAATTT
1 TATTTATATAAATTT
97794 TA
1 TA
97796 ATATATTTAT
Statistics
Matches: 37, Mismatches: 6, Indels: 8
0.73 0.12 0.16
Matches are distributed among these distances:
12 5 0.14
13 3 0.08
15 19 0.51
16 6 0.16
17 4 0.11
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (15 bp):
TATTTATATAAATTT
Found at i:97810 original size:32 final size:30
Alignment explanation
Indices: 97774--97845 Score: 76
Period size: 32 Copynumber: 2.4 Consensus size: 30
97764 TATTTAAAAA
* *
97774 AATTTTATTTATATAAATTTTAATATATTTAT
1 AATTTTATTTATAAAAATTATAA-A-ATTTAT
* *
97806 AATTTAAATTATAAAAATTATAAAATTTAT
1 AATTTTATTTATAAAAATTATAAAATTTAT
97836 -A-TTTATTTAT
1 AATTTTATTTAT
97846 TTTATCTATA
Statistics
Matches: 34, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
28 7 0.21
29 1 0.03
30 6 0.18
31 1 0.03
32 19 0.56
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (30 bp):
AATTTTATTTATAAAAATTATAAAATTTAT
Found at i:97822 original size:47 final size:44
Alignment explanation
Indices: 97735--97824 Score: 110
Period size: 47 Copynumber: 2.0 Consensus size: 44
97725 ATTTATATTA
* *
97735 TATTTATATATTTTATTATATTATAATTATATTTAAAAAAATTT
1 TATTTATATATTTTAATATATTATAATTATAATTAAAAAAATTT
*
97779 TATTTATATAAATTTTAATATATTTATAATT-TAAATTATAAAAATT
1 TATTTATAT--ATTTTAATATA-TTATAATTAT-AATTAAAAAAATT
97825 ATAAAATTTA
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
44 9 0.23
46 11 0.28
47 19 0.49
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (44 bp):
TATTTATATATTTTAATATATTATAATTATAATTAAAAAAATTT
Found at i:97834 original size:30 final size:31
Alignment explanation
Indices: 97782--97840 Score: 77
Period size: 32 Copynumber: 1.9 Consensus size: 31
97772 AAAATTTTAT
* *
97782 TTATATAAATTTTAATATATTTATAATTTAAA
1 TTATAAAAATTATAATATATTTAT-ATTTAAA
97814 TTATAAAAATTATAA-A-ATTTATATTTA
1 TTATAAAAATTATAATATATTTATATTTA
97841 TTTATTTTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
29 5 0.20
30 6 0.24
31 1 0.04
32 13 0.52
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (31 bp):
TTATAAAAATTATAATATATTTATATTTAAA
Found at i:98642 original size:22 final size:22
Alignment explanation
Indices: 98598--98654 Score: 64
Period size: 21 Copynumber: 2.6 Consensus size: 22
98588 ATAAACAAAA
*
98598 TTTATA-TTAATATTTATATAT
1 TTTATATTTAATATTTAAATAT
98619 TTTATATTTAA-ATTTAAATAAT
1 TTTATATTTAATATTTAAAT-AT
*
98641 TTTTTATTATAATA
1 TTTATATT-TAATA
98655 ACAATAATCT
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
21 13 0.43
22 13 0.43
23 3 0.10
24 1 0.03
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (22 bp):
TTTATATTTAATATTTAAATAT
Found at i:100794 original size:17 final size:18
Alignment explanation
Indices: 100758--100800 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
100748 AATCATATAA
*
100758 AAAATATATATAAAATAT
1 AAAATAAATATAAAATAT
*
100776 AAAATAAAT-TAAGATAT
1 AAAATAAATATAAAATAT
*
100793 AACATAAA
1 AAAATAAA
100801 CACAATATTA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
17 14 0.64
18 8 0.36
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.28
Consensus pattern (18 bp):
AAAATAAATATAAAATAT
Found at i:101144 original size:16 final size:18
Alignment explanation
Indices: 101114--101153 Score: 59
Period size: 16 Copynumber: 2.4 Consensus size: 18
101104 AAATATTTAA
101114 AATATA-ACATGAATATG
1 AATATACACATGAATATG
101131 -ATATACACAT-AATATG
1 AATATACACATGAATATG
101147 AATATAC
1 AATATAC
101154 GTACATATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
16 11 0.52
17 10 0.48
ACGTcount: A:0.53, C:0.10, G:0.07, T:0.30
Consensus pattern (18 bp):
AATATACACATGAATATG
Found at i:101839 original size:11 final size:11
Alignment explanation
Indices: 101825--101884 Score: 50
Period size: 11 Copynumber: 5.1 Consensus size: 11
101815 ATACGAATAC
101825 AAATATATAAA
1 AAATATATAAA
*
101836 AAATATATATA
1 AAATATATAAA
*
101847 AAATAAAATAAA
1 AAAT-ATATAAA
101859 TTATTAATATATAAA
1 --A--AATATATAAA
101874 AAATATA-AAA
1 AAATATATAAA
101884 A
1 A
101885 TATAATATTT
Statistics
Matches: 40, Mismatches: 4, Indels: 11
0.73 0.07 0.20
Matches are distributed among these distances:
10 4 0.10
11 20 0.50
12 5 0.12
13 1 0.03
14 1 0.03
15 6 0.15
16 3 0.08
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (11 bp):
AAATATATAAA
Found at i:101855 original size:27 final size:28
Alignment explanation
Indices: 101820--101889 Score: 70
Period size: 27 Copynumber: 2.5 Consensus size: 28
101810 ACACAATACG
*
101820 AATACAAATATATAAAAAATATATATAA
1 AATACAAATATATAAAAAATATATAAAA
* * **
101848 AATA-AAATAAATTATTAATATATAAAA
1 AATACAAATATATAAAAAATATATAAAA
* *
101875 AATATAAAAATATAA
1 AATACAAATATATAA
101890 TATTTTACAT
Statistics
Matches: 33, Mismatches: 8, Indels: 2
0.77 0.19 0.05
Matches are distributed among these distances:
27 22 0.67
28 11 0.33
ACGTcount: A:0.69, C:0.01, G:0.00, T:0.30
Consensus pattern (28 bp):
AATACAAATATATAAAAAATATATAAAA
Found at i:101943 original size:8 final size:8
Alignment explanation
Indices: 101930--101972 Score: 50
Period size: 8 Copynumber: 5.4 Consensus size: 8
101920 ACACATAAAT
101930 TTTTTTTC
1 TTTTTTTC
101938 TTTTTTTC
1 TTTTTTTC
** *
101946 TCCTTTGC
1 TTTTTTTC
101954 TTTTTTTC
1 TTTTTTTC
*
101962 TTTCTTTC
1 TTTTTTTC
101970 TTT
1 TTT
101973 CTTTGTTTCT
Statistics
Matches: 28, Mismatches: 7, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
8 28 1.00
ACGTcount: A:0.00, C:0.19, G:0.02, T:0.79
Consensus pattern (8 bp):
TTTTTTTC
Found at i:101972 original size:16 final size:16
Alignment explanation
Indices: 101934--101983 Score: 57
Period size: 16 Copynumber: 3.1 Consensus size: 16
101924 ATAAATTTTT
*
101934 TTTCTTTTTTTC-TCC
1 TTTCTTTTTTTCTTTC
101949 TTTGCTTTTTTTCTTTC
1 TTT-CTTTTTTTCTTTC
* *
101966 TTTCTTTCTTTGTTTC
1 TTTCTTTTTTTCTTTC
101982 TT
1 TT
101984 AGCTTCCTCC
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
15 3 0.10
16 22 0.73
17 5 0.17
ACGTcount: A:0.00, C:0.20, G:0.04, T:0.76
Consensus pattern (16 bp):
TTTCTTTTTTTCTTTC
Found at i:102124 original size:27 final size:27
Alignment explanation
Indices: 102081--102132 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
102071 AGACTTCTTC
*
102081 AAAGAAAATATTCGAAAAT-CAAATGG
1 AAAGAAAACATTCGAAAATGCAAATGG
*
102107 AAAGAAAAACATTGGAAAATGCAAAT
1 AAAG-AAAACATTCGAAAATGCAAAT
102133 ATAAATCCAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 4 0.18
27 13 0.59
28 5 0.23
ACGTcount: A:0.60, C:0.08, G:0.15, T:0.17
Consensus pattern (27 bp):
AAAGAAAACATTCGAAAATGCAAATGG
Found at i:105139 original size:2 final size:2
Alignment explanation
Indices: 105132--105177 Score: 92
Period size: 2 Copynumber: 23.0 Consensus size: 2
105122 TTTACTCCAT
105132 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
105174 TA TA
1 TA TA
105178 AGCTCTGTGA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 44 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:107811 original size:16 final size:16
Alignment explanation
Indices: 107790--107837 Score: 53
Period size: 15 Copynumber: 2.9 Consensus size: 16
107780 TTATATTTTA
107790 TTTTCTTTTTTCTCTT
1 TTTTCTTTTTTCTCTT
*
107806 TTTTC-TTTCTCTCTT
1 TTTTCTTTTTTCTCTT
*
107821 TGCTTCTTTGTTTCTCT
1 T-TTTCTTT-TTTCTCT
107838 ATAAACTCTC
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
15 10 0.38
16 8 0.31
17 2 0.08
18 6 0.23
ACGTcount: A:0.00, C:0.23, G:0.04, T:0.73
Consensus pattern (16 bp):
TTTTCTTTTTTCTCTT
Found at i:107871 original size:12 final size:12
Alignment explanation
Indices: 107856--107880 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
107846 TCCCAACCTC
107856 TCTTTTTTTTTT
1 TCTTTTTTTTTT
107868 TCTTTTTTTTTT
1 TCTTTTTTTTTT
107880 T
1 T
107881 TAAATATGCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92
Consensus pattern (12 bp):
TCTTTTTTTTTT
Found at i:108840 original size:20 final size:20
Alignment explanation
Indices: 108817--108861 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
108807 GAAAGAAGGG
* *
108817 AAAGTAAAAGAGAAGGAAA-A
1 AAAGAAAAAGA-AAGAAAAGA
108837 AAAGAAAAAGAAAGAAAAGA
1 AAAGAAAAAGAAAGAAAAGA
108857 AAAGA
1 AAAGA
108862 GAGAGGGAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 6 0.27
20 16 0.73
ACGTcount: A:0.76, C:0.00, G:0.22, T:0.02
Consensus pattern (20 bp):
AAAGAAAAAGAAAGAAAAGA
Found at i:108853 original size:18 final size:20
Alignment explanation
Indices: 108817--108854 Score: 53
Period size: 18 Copynumber: 2.0 Consensus size: 20
108807 GAAAGAAGGG
*
108817 AAAGTAAAAGAGAAGGAAAA
1 AAAGTAAAAGAGAAAGAAAA
108837 AAAG-AAAA-AGAAAGAAAA
1 AAAGTAAAAGAGAAAGAAAA
108855 GAAAAGAGAG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 9 0.53
19 4 0.24
20 4 0.24
ACGTcount: A:0.76, C:0.00, G:0.21, T:0.03
Consensus pattern (20 bp):
AAAGTAAAAGAGAAAGAAAA
Found at i:108856 original size:15 final size:15
Alignment explanation
Indices: 108816--108859 Score: 54
Period size: 14 Copynumber: 2.9 Consensus size: 15
108806 GGAAAGAAGG
* *
108816 GAAAGTAAAAGAGAAG
1 GAAAG-AAAAGAAAAA
108832 GAAA-AAAAGAAAAA
1 GAAAGAAAAGAAAAA
108846 GAAAGAAAAGAAAA
1 GAAAGAAAAGAAAA
108860 GAGAGAGGGA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
14 12 0.48
15 9 0.36
16 4 0.16
ACGTcount: A:0.75, C:0.00, G:0.23, T:0.02
Consensus pattern (15 bp):
GAAAGAAAAGAAAAA
Found at i:108954 original size:23 final size:25
Alignment explanation
Indices: 108910--108955 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
108900 TTTTTGTGTT
**
108910 ATTTTTTATATTTTATTTTTATTTA
1 ATTTTTTATATTTTATAATTATTTA
108935 ATTTTTTAT-TTTTA-AATTATT
1 ATTTTTTATATTTTATAATTATT
108956 AAAAAGTTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 5 0.26
24 5 0.26
25 9 0.47
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (25 bp):
ATTTTTTATATTTTATAATTATTTA
Found at i:109069 original size:16 final size:17
Alignment explanation
Indices: 109043--109076 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
109033 TTTTTAAGTT
109043 ATTTTTATTATATCTTA
1 ATTTTTATTATATCTTA
*
109060 ATTTTT-TTATATTTTA
1 ATTTTTATTATATCTTA
109076 A
1 A
109077 ATAATTTATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 10 0.62
17 6 0.38
ACGTcount: A:0.29, C:0.03, G:0.00, T:0.68
Consensus pattern (17 bp):
ATTTTTATTATATCTTA
Found at i:110429 original size:2 final size:2
Alignment explanation
Indices: 110422--110455 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
110412 TAAACTGTGC
110422 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
110456 GTTGCTAGCT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:111299 original size:114 final size:114
Alignment explanation
Indices: 111099--111325 Score: 427
Period size: 114 Copynumber: 2.0 Consensus size: 114
111089 ATAAAGAGTT
111099 TAATTAACATAAATTGTATTGATGTTTGGAAGAAGTAGCAATTACCATCAAGGATTTAAATTGTT
1 TAATTAACATAAATTGTATTGATGTTTGGAAGAAGTAGCAATTACCATCAAGGATTTAAATTGTT
111164 GTTAGAGACTTGTTTTCGGTTGTATTATCACTACAAAATTTAAAAGAAC
66 GTTAGAGACTTGTTTTCGGTTGTATTATCACTACAAAATTTAAAAGAAC
* *
111213 TAATTAACATAAATTGTTTTGATGTTTGGAAGAAGTAGCAATTACCATTAAGGATTTAAATTGTT
1 TAATTAACATAAATTGTATTGATGTTTGGAAGAAGTAGCAATTACCATCAAGGATTTAAATTGTT
*
111278 GTTGGAGACTTGTTTTCGGTTGTATTATCACTACAAAATTTAAAAGAA
66 GTTAGAGACTTGTTTTCGGTTGTATTATCACTACAAAATTTAAAAGAA
111326 TTAAGGATTA
Statistics
Matches: 110, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
114 110 1.00
ACGTcount: A:0.36, C:0.09, G:0.17, T:0.38
Consensus pattern (114 bp):
TAATTAACATAAATTGTATTGATGTTTGGAAGAAGTAGCAATTACCATCAAGGATTTAAATTGTT
GTTAGAGACTTGTTTTCGGTTGTATTATCACTACAAAATTTAAAAGAAC
Found at i:115547 original size:17 final size:18
Alignment explanation
Indices: 115521--115563 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 18
115511 TGAAAAAAAA
*
115521 TTTTCAAAAATAATT-TAT
1 TTTTTAAAAA-AATTATAT
115539 TTTTTAAAAAAATTGATAT
1 TTTTTAAAAAAATT-ATAT
115558 TTTTTA
1 TTTTTA
115564 TTATTTGAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
17 4 0.18
18 9 0.41
19 9 0.41
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.53
Consensus pattern (18 bp):
TTTTTAAAAAAATTATAT
Found at i:115738 original size:19 final size:19
Alignment explanation
Indices: 115677--115738 Score: 56
Period size: 19 Copynumber: 3.2 Consensus size: 19
115667 TCTATTTTAG
**
115677 TTTTTAAAAAATATCTTAA
1 TTTTTAAAAAATAAATTAA
115696 TTTATTAAAAAAATAAGATT--
1 TTT-TT-AAAAAATAA-ATTAA
*
115716 TTTTTAAATAATAAATTAA
1 TTTTTAAAAAATAAATTAA
115735 TTTT
1 TTTT
115739 CTATTAAATA
Statistics
Matches: 35, Mismatches: 3, Indels: 10
0.73 0.06 0.21
Matches are distributed among these distances:
17 3 0.09
18 8 0.23
19 9 0.26
20 5 0.14
21 8 0.23
22 2 0.06
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (19 bp):
TTTTTAAAAAATAAATTAA
Found at i:119587 original size:34 final size:35
Alignment explanation
Indices: 119524--119593 Score: 115
Period size: 35 Copynumber: 2.0 Consensus size: 35
119514 GAAGATTACT
*
119524 TTTGGAAGAATATTGAGATGTCCAATCAAATTTAA
1 TTTGGAAGAATATTGAGATGTCCAATCAAAATTAA
*
119559 TTTGGAAGAATGTTGAGAT-TCCAATCAAAATTAA
1 TTTGGAAGAATATTGAGATGTCCAATCAAAATTAA
119593 T
1 T
119594 GACTTTAAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
34 15 0.45
35 18 0.55
ACGTcount: A:0.40, C:0.09, G:0.17, T:0.34
Consensus pattern (35 bp):
TTTGGAAGAATATTGAGATGTCCAATCAAAATTAA
Found at i:119978 original size:15 final size:15
Alignment explanation
Indices: 119942--119978 Score: 56
Period size: 15 Copynumber: 2.4 Consensus size: 15
119932 TTTTTTAAAA
119942 ATAAAAAAATGAATT
1 ATAAAAAAATGAATT
*
119957 TTAAAAAAATGAAATT
1 ATAAAAAAATG-AATT
119973 ATAAAA
1 ATAAAA
119979 TTTAAATTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
15 10 0.53
16 9 0.47
ACGTcount: A:0.68, C:0.00, G:0.05, T:0.27
Consensus pattern (15 bp):
ATAAAAAAATGAATT
Found at i:125540 original size:2 final size:2
Alignment explanation
Indices: 125533--125563 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
125523 TTGTGAATTT
125533 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
125564 TTATGAGATT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:127512 original size:21 final size:21
Alignment explanation
Indices: 127488--127527 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
127478 ATTTATTATT
127488 TAAAT-TTAATTATAAAATATA
1 TAAATATTAA-TATAAAATATA
127509 TAAATATTAATATAAAATA
1 TAAATATTAATATAAAATA
127528 ATTTTTAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 14 0.78
22 4 0.22
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (21 bp):
TAAATATTAATATAAAATATA
Found at i:129813 original size:22 final size:21
Alignment explanation
Indices: 129784--129824 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
129774 TATTATTCAT
*
129784 AATAAATAAATTTTTTATATA
1 AATAAATAAATATTTTATATA
*
129805 AATATAATATATATTTTATA
1 AATA-AATAAATATTTTATA
129825 ATTAATTTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 4 0.24
22 13 0.76
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (21 bp):
AATAAATAAATATTTTATATA
Found at i:130338 original size:31 final size:32
Alignment explanation
Indices: 130303--130362 Score: 86
Period size: 32 Copynumber: 1.9 Consensus size: 32
130293 TATTTAAATA
* *
130303 ATAAAAT-ATTTTTATTTATAAATATATTAAT
1 ATAAAATAAATTTAATTTATAAATATATTAAT
*
130334 ATAAAATAAATTTAATTTTTAAATATATT
1 ATAAAATAAATTTAATTTATAAATATATT
130363 TTAAAAAATA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
31 7 0.28
32 18 0.72
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (32 bp):
ATAAAATAAATTTAATTTATAAATATATTAAT
Found at i:132949 original size:14 final size:15
Alignment explanation
Indices: 132923--132953 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
132913 TACTGATGCT
132923 TGCTGTAGTTGTTGC
1 TGCTGTAGTTGTTGC
132938 TGCTGT-GTTGTTGC
1 TGCTGTAGTTGTTGC
132952 TG
1 TG
132954 TTGATGCTTG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 10 0.62
15 6 0.38
ACGTcount: A:0.03, C:0.13, G:0.35, T:0.48
Consensus pattern (15 bp):
TGCTGTAGTTGTTGC
Found at i:133836 original size:33 final size:33
Alignment explanation
Indices: 133798--133907 Score: 114
Period size: 33 Copynumber: 3.2 Consensus size: 33
133788 TTGCCAAATC
133798 ATTTCATACTTGCATCCACGTTACATGATCATT
1 ATTTCATACTTGCATCCACGTTACATGATCATT
* * * * * *
133831 ATTTCATGCTTTCA-CAACCTTTATCCTTTGCATCATC
1 ATTTCATACTTGCATCCA-CGTTA--C-ATG-ATCATT
133868 ATTTCATACTTGCATCCACGTTACATGATCATT
1 ATTTCATACTTGCATCCACGTTACATGATCATT
133901 ATTTCAT
1 ATTTCAT
133908 GCTTTCACAA
Statistics
Matches: 59, Mismatches: 12, Indels: 12
0.71 0.14 0.14
Matches are distributed among these distances:
32 2 0.03
33 28 0.47
34 2 0.03
35 2 0.03
36 2 0.03
37 21 0.36
38 2 0.03
ACGTcount: A:0.25, C:0.25, G:0.07, T:0.42
Consensus pattern (33 bp):
ATTTCATACTTGCATCCACGTTACATGATCATT
Found at i:133872 original size:37 final size:37
Alignment explanation
Indices: 133825--133944 Score: 133
Period size: 37 Copynumber: 3.4 Consensus size: 37
133815 ACGTTACATG
*
133825 ATCATTATTTCATGCTTTCACAACCTTTATCCTTTGC
1 ATCATCATTTCATGCTTTCACAACCTTTATCCTTTGC
* * * * *
133862 ATCATCATTTCATACTTGCATCCA-CGTTA--C-ATG-
1 ATCATCATTTCATGCTTTCA-CAACCTTTATCCTTTGC
*
133895 ATCATTATTTCATGCTTTCACAACCTTTATCCTTTGC
1 ATCATCATTTCATGCTTTCACAACCTTTATCCTTTGC
133932 ATCATCATTTCAT
1 ATCATCATTTCAT
133945 ACTTGCGTCC
Statistics
Matches: 64, Mismatches: 13, Indels: 12
0.72 0.15 0.13
Matches are distributed among these distances:
32 2 0.03
33 21 0.33
34 2 0.03
35 2 0.03
36 2 0.03
37 33 0.52
38 2 0.03
ACGTcount: A:0.24, C:0.27, G:0.06, T:0.43
Consensus pattern (37 bp):
ATCATCATTTCATGCTTTCACAACCTTTATCCTTTGC
Done.