Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold289
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 700734
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 3 of 5
Found at i:315890 original size:13 final size:13
Alignment explanation
Indices: 315872--315897 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
315862 CAATTTTTTG
315872 TGTATCGATACAT
1 TGTATCGATACAT
315885 TGTATCGATACAT
1 TGTATCGATACAT
315898 ACTTGATGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:315982 original size:20 final size:20
Alignment explanation
Indices: 315957--316029 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
315947 CAACTTTTTT
315957 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
****
315977 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACAT-TGCAAC
315998 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
316018 ATGTATCGATAC
1 ATGTATCGATAC
316030 TTTGAATTGT
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.36
Consensus pattern (20 bp):
ATGTATCGATACATTGCAAC
Found at i:315995 original size:41 final size:41
Alignment explanation
Indices: 315936--316029 Score: 170
Period size: 41 Copynumber: 2.3 Consensus size: 41
315926 CTGCCAAGAA
*
315936 ATGTATCGATACAACTTTTTTATGTATCGATACATTGCAAC
1 ATGTATCGATACAACTTTTTCATGTATCGATACATTGCAAC
*
315977 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
1 ATGTATCGATACAACTTTTTCATGTATCGATACATTGCAAC
316018 ATGTATCGATAC
1 ATGTATCGATAC
316030 TTTGAATTGT
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 51 1.00
ACGTcount: A:0.31, C:0.18, G:0.13, T:0.38
Consensus pattern (41 bp):
ATGTATCGATACAACTTTTTCATGTATCGATACATTGCAAC
Found at i:316011 original size:21 final size:21
Alignment explanation
Indices: 315936--316011 Score: 91
Period size: 21 Copynumber: 3.7 Consensus size: 21
315926 CTGCCAAGAA
* *
315936 ATGTATCGATACAACTTTTTT
1 ATGTATCGATACATCTTTTTC
****
315957 ATGTATCGATACAT-TGCAAC
1 ATGTATCGATACATCTTTTTC
315977 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACATCTTTTTC
315998 ATGTATCGATACAT
1 ATGTATCGATACAT
316012 TGCAACATGT
Statistics
Matches: 44, Mismatches: 10, Indels: 2
0.79 0.18 0.04
Matches are distributed among these distances:
20 15 0.34
21 29 0.66
ACGTcount: A:0.30, C:0.17, G:0.12, T:0.41
Consensus pattern (21 bp):
ATGTATCGATACATCTTTTTC
Found at i:318438 original size:13 final size:13
Alignment explanation
Indices: 318420--318458 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
318410 ATAATCACCC
*
318420 TGTATCGATACAG
1 TGTATCGATACAA
318433 TGTATCGATACAA
1 TGTATCGATACAA
318446 TGTATCGATACAA
1 TGTATCGATACAA
318459 AGAAAAATGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:318469 original size:20 final size:20
Alignment explanation
Indices: 318444--318522 Score: 70
Period size: 20 Copynumber: 3.7 Consensus size: 20
318434 GTATCGATAC
318444 AATGTATCGATACAAAGAAA
1 AATGTATCGATACAAAGAAA
*
318464 AATGTATCGATACATAGAATTTCCA
1 AATGTATCGATACAAAGAA-----A
*
318489 GATGTATCGATACACAA-AAA
1 AATGTATCGATACA-AAGAAA
*
318509 CATGTATCGATACA
1 AATGTATCGATACA
318523 TTTTGGACAT
Statistics
Matches: 49, Mismatches: 4, Indels: 12
0.75 0.06 0.18
Matches are distributed among these distances:
20 32 0.65
25 16 0.33
26 1 0.02
ACGTcount: A:0.46, C:0.15, G:0.14, T:0.25
Consensus pattern (20 bp):
AATGTATCGATACAAAGAAA
Found at i:324647 original size:13 final size:13
Alignment explanation
Indices: 324629--324654 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
324619 CAATTTTTTG
324629 TGTATCGATACAT
1 TGTATCGATACAT
324642 TGTATCGATACAT
1 TGTATCGATACAT
324655 ACTTGATGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:324739 original size:20 final size:20
Alignment explanation
Indices: 324714--324786 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
324704 CAACTTTTTT
324714 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
****
324734 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACAT-TGCAAC
324755 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
324775 ATGTATCGATAC
1 ATGTATCGATAC
324787 TTTGAATTGT
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.36
Consensus pattern (20 bp):
ATGTATCGATACATTGCAAC
Found at i:324752 original size:41 final size:41
Alignment explanation
Indices: 324693--324786 Score: 170
Period size: 41 Copynumber: 2.3 Consensus size: 41
324683 CTGCCAAGAA
*
324693 ATGTATCGATACAACTTTTTTATGTATCGATACATTGCAAC
1 ATGTATCGATACAACTTTTTCATGTATCGATACATTGCAAC
*
324734 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
1 ATGTATCGATACAACTTTTTCATGTATCGATACATTGCAAC
324775 ATGTATCGATAC
1 ATGTATCGATAC
324787 TTTGAATTGT
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 51 1.00
ACGTcount: A:0.31, C:0.18, G:0.13, T:0.38
Consensus pattern (41 bp):
ATGTATCGATACAACTTTTTCATGTATCGATACATTGCAAC
Found at i:324768 original size:21 final size:21
Alignment explanation
Indices: 324693--324768 Score: 91
Period size: 21 Copynumber: 3.7 Consensus size: 21
324683 CTGCCAAGAA
* *
324693 ATGTATCGATACAACTTTTTT
1 ATGTATCGATACATCTTTTTC
****
324714 ATGTATCGATACAT-TGCAAC
1 ATGTATCGATACATCTTTTTC
324734 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACATCTTTTTC
324755 ATGTATCGATACAT
1 ATGTATCGATACAT
324769 TGCAACATGT
Statistics
Matches: 44, Mismatches: 10, Indels: 2
0.79 0.18 0.04
Matches are distributed among these distances:
20 15 0.34
21 29 0.66
ACGTcount: A:0.30, C:0.17, G:0.12, T:0.41
Consensus pattern (21 bp):
ATGTATCGATACATCTTTTTC
Found at i:326831 original size:81 final size:81
Alignment explanation
Indices: 326639--326936 Score: 330
Period size: 81 Copynumber: 3.7 Consensus size: 81
326629 CTAGGGATGG
* * * * * *
326639 CCTGAAGATTAAAAATTTGACGTTGTTGGAAGTAAAGACGGGGTTAGAGTATCCCCTCAAAAATG
1 CCTGAAGATTGAAAATTCGATGTTTTTGGAAGTAAAAATGGGGTTAGAGTATCCCCTCAAAAATG
*
326704 GT-ATGGTTGGGAGTATT
66 GTGA-GGTT-GGAGTATC
* * * *
326721 CCTGAAGATGGAAAATTCGATGTTTTTGGAAGTAAAAATGGGGCTAGAGTATCCCCTCAGAAATT
1 CCTGAAGATTGAAAATTCGATGTTTTTGGAAGTAAAAATGGGGTTAGAGTATCCCCTCAAAAATG
*
326786 GTGGGGTTGGAGTATC
66 GTGAGGTTGGAGTATC
* * * * *
326802 CCTAAAGATTGAAAATTCGATGTTTTTGGAAGTAAAAATGGGATTGGAGTATCCCTTAAAAAATG
1 CCTGAAGATTGAAAATTCGATGTTTTTGGAAGTAAAAATGGGGTTAGAGTATCCCCTCAAAAATG
* *
326867 GTGAGATTGAAGTATC
66 GTGAGGTTGGAGTATC
* * * * * *
326883 CCCGAAGA-TGAAAAATTCGATATTTTTGGAAATAAAGATAGGGTTGGAGTATCC
1 CCTGAAGATTG-AAAATTCGATGTTTTTGGAAGTAAAAATGGGGTTAGAGTATCC
326937 TTCCGGAGAT
Statistics
Matches: 183, Mismatches: 31, Indels: 5
0.84 0.14 0.02
Matches are distributed among these distances:
80 2 0.01
81 120 0.66
82 61 0.33
ACGTcount: A:0.34, C:0.11, G:0.27, T:0.29
Consensus pattern (81 bp):
CCTGAAGATTGAAAATTCGATGTTTTTGGAAGTAAAAATGGGGTTAGAGTATCCCCTCAAAAATG
GTGAGGTTGGAGTATC
Found at i:326935 original size:162 final size:163
Alignment explanation
Indices: 326643--326936 Score: 376
Period size: 163 Copynumber: 1.8 Consensus size: 163
326633 GGATGGCCTG
* * * *
326643 AAGATTAAAAATTTGACGTTGTTGGAAGTAAAGACGGGGTTAGAGTATCCCCTCAAAAATGGTAT
1 AAGATTAAAAATTCGACGTTGTTGGAAGTAAAAACGGGATTAGAGTATCCCCTAAAAAATGGTAT
* * * * * * * *
326708 GGTTGGGAGTATTCCTGAAGATGGAAAATTCGATGTTTTTGGAAGTAAAAATGGGGCTAGAGTAT
66 GATTGGAAGTATCCCCGAAGATGAAAAATTCGATATTTTTGGAAATAAAAATAGGGCTAGAGTAT
326773 CCCCTCAGAAATTGTGGGGTTGGAGTATCCCTA
131 CCCCTCAGAAATTGTGGGGTTGGAGTATCCCTA
* * * * * *
326806 AAGATTGAAAATTCGATGTTTTTGGAAGTAAAAATGGGATTGGAGTATCCCTTAAAAAATGGTGA
1 AAGATTAAAAATTCGACGTTGTTGGAAGTAAAAACGGGATTAGAGTATCCCCTAAAAAATGGT-A
* * *
326871 -GATT-GAAGTATCCCCGAAGATGAAAAATTCGATATTTTTGGAAATAAAGATAGGGTTGGAGTA
65 TGATTGGAAGTATCCCCGAAGATGAAAAATTCGATATTTTTGGAAATAAAAATAGGGCTAGAGTA
326934 TCC
130 TCC
326937 TTCCGGAGAT
Statistics
Matches: 109, Mismatches: 21, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
162 52 0.48
163 56 0.51
164 1 0.01
ACGTcount: A:0.34, C:0.10, G:0.27, T:0.29
Consensus pattern (163 bp):
AAGATTAAAAATTCGACGTTGTTGGAAGTAAAAACGGGATTAGAGTATCCCCTAAAAAATGGTAT
GATTGGAAGTATCCCCGAAGATGAAAAATTCGATATTTTTGGAAATAAAAATAGGGCTAGAGTAT
CCCCTCAGAAATTGTGGGGTTGGAGTATCCCTA
Found at i:335400 original size:50 final size:50
Alignment explanation
Indices: 335325--335528 Score: 309
Period size: 50 Copynumber: 4.1 Consensus size: 50
335315 AAAAACCCTG
* * * *
335325 AATTGTTGACTGTTCTTCACTAACCTTTGATAATCGAGAGAGGTGGCCAT
1 AATTGTTGACTATTCTTCACCAACCTTTGACAATAGAGAGAGGTGGCCAT
* *
335375 AATTGTTGACTATTCTTCACCAACCTTTGACAATCGAGAGAAGTGGCCAT
1 AATTGTTGACTATTCTTCACCAACCTTTGACAATAGAGAGAGGTGGCCAT
* *
335425 AATTGTTGACTATTCTTCACCAACCTTTGACAATAGAGAGAGGTGGTCGT
1 AATTGTTGACTATTCTTCACCAACCTTTGACAATAGAGAGAGGTGGCCAT
* * *
335475 AATTGTTGACTATTCTTCACCAACCTTTGACAATAAAGAGAGATGGCCGT
1 AATTGTTGACTATTCTTCACCAACCTTTGACAATAGAGAGAGGTGGCCAT
335525 AATT
1 AATT
335529 ATTAACTCTA
Statistics
Matches: 143, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
50 143 1.00
ACGTcount: A:0.29, C:0.19, G:0.20, T:0.32
Consensus pattern (50 bp):
AATTGTTGACTATTCTTCACCAACCTTTGACAATAGAGAGAGGTGGCCAT
Found at i:339803 original size:50 final size:50
Alignment explanation
Indices: 339749--339856 Score: 180
Period size: 50 Copynumber: 2.2 Consensus size: 50
339739 AGGTGTTGCC
* *
339749 ATTGTTGACTATTCTTCACCAACCTTTGACAATCAAGAGAGGTGACCGTA
1 ATTGTTGACTATTCTTCACCAACCTTTGACAATCAAGAGAGATGACCATA
*
339799 ATTGTTGACTATTCTTCACCAACCTTTGACAATCGAGAGAGATGACCATA
1 ATTGTTGACTATTCTTCACCAACCTTTGACAATCAAGAGAGATGACCATA
*
339849 ATTATTGA
1 ATTGTTGA
339857 AAGCTCAAGG
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
50 54 1.00
ACGTcount: A:0.31, C:0.20, G:0.17, T:0.31
Consensus pattern (50 bp):
ATTGTTGACTATTCTTCACCAACCTTTGACAATCAAGAGAGATGACCATA
Found at i:340634 original size:13 final size:13
Alignment explanation
Indices: 340616--340641 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
340606 ACATTTTATG
340616 ATGTATCGATACA
1 ATGTATCGATACA
340629 ATGTATCGATACA
1 ATGTATCGATACA
340642 TACTGTGTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:340740 original size:20 final size:21
Alignment explanation
Indices: 340693--340745 Score: 72
Period size: 20 Copynumber: 2.6 Consensus size: 21
340683 ACCAATGACT
**
340693 TGTATCGATACATTATTTTCA
1 TGTATCGATACATTATGGTCA
*
340714 AGTATCGATACATT-TGGTCA
1 TGTATCGATACATTATGGTCA
340734 TGTATCGATACA
1 TGTATCGATACA
340746 ATGTATCGAT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
20 15 0.54
21 13 0.46
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.40
Consensus pattern (21 bp):
TGTATCGATACATTATGGTCA
Found at i:340751 original size:13 final size:13
Alignment explanation
Indices: 340733--340761 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
340723 ACATTTGGTC
340733 ATGTATCGATACA
1 ATGTATCGATACA
340746 ATGTATCGATACA
1 ATGTATCGATACA
340759 ATG
1 ATG
340762 CAATCTGTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.38, C:0.14, G:0.17, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:340772 original size:20 final size:20
Alignment explanation
Indices: 340747--340797 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
340737 ATCGATACAA
*
340747 TGTATCGATACAATGCAATC
1 TGTATCGATACAATGAAATC
* * *
340767 TGTATCGATACATTTAAATG
1 TGTATCGATACAATGAAATC
340787 TGTATCGATAC
1 TGTATCGATAC
340798 TTTTCAGGGT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.35
Consensus pattern (20 bp):
TGTATCGATACAATGAAATC
Found at i:343090 original size:20 final size:20
Alignment explanation
Indices: 343060--343101 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 20
343050 CTGTTTTTGT
343060 CGATGATTTTG-ATGAAAAA
1 CGATGATTTTGAATGAAAAA
343079 CGATGTATTTTGAAATGAAAAA
1 CGATG-ATTTTG-AATGAAAAA
343101 C
1 C
343102 AAGAATTTTG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 5 0.25
20 6 0.30
22 9 0.45
ACGTcount: A:0.43, C:0.07, G:0.19, T:0.31
Consensus pattern (20 bp):
CGATGATTTTGAATGAAAAA
Found at i:343109 original size:21 final size:22
Alignment explanation
Indices: 343071--343111 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
343061 GATGATTTTG
* *
343071 ATGAAAAACGATGTATTTTGAA
1 ATGAAAAACGAAGAATTTTGAA
343093 ATGAAAAAC-AAGAATTTTG
1 ATGAAAAACGAAGAATTTTG
343112 CAAAAGATTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 8 0.47
22 9 0.53
ACGTcount: A:0.49, C:0.05, G:0.17, T:0.29
Consensus pattern (22 bp):
ATGAAAAACGAAGAATTTTGAA
Found at i:347810 original size:9 final size:9
Alignment explanation
Indices: 347796--347826 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
347786 TCTGAGTCAC
*
347796 CATCATCAT
1 CATCATCTT
347805 CATCATCTT
1 CATCATCTT
347814 CATCATCTT
1 CATCATCTT
347823 CATC
1 CATC
347827 GTCCTTGATG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.26, C:0.35, G:0.00, T:0.39
Consensus pattern (9 bp):
CATCATCTT
Found at i:349556 original size:20 final size:21
Alignment explanation
Indices: 349509--349559 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
349499 GCCAATGACT
*
349509 TGTATCGATACATTATTTTCA
1 TGTATCGATACATTATGTTCA
*
349530 AGTATCGATACATT-TGGTT-A
1 TGTATCGATACATTAT-GTTCA
349550 TGTATCGATA
1 TGTATCGATA
349560 GAATGTATCG
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
20 11 0.42
21 15 0.58
ACGTcount: A:0.29, C:0.12, G:0.16, T:0.43
Consensus pattern (21 bp):
TGTATCGATACATTATGTTCA
Found at i:365725 original size:1 final size:1
Alignment explanation
Indices: 365719--365787 Score: 57
Period size: 1 Copynumber: 69.0 Consensus size: 1
365709 CTTTCATACC
* * * * * * * * *
365719 AAAAAAACAAAAAAAACAAGAAAAAAACAAAAAAAAACAAAAAAAAACAAAAAAACAAACAAATA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
365784 AAAA
1 AAAA
365788 GGGGTCCAGA
Statistics
Matches: 50, Mismatches: 18, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
1 50 1.00
ACGTcount: A:0.87, C:0.10, G:0.01, T:0.01
Consensus pattern (1 bp):
A
Found at i:365733 original size:9 final size:9
Alignment explanation
Indices: 365719--365777 Score: 75
Period size: 9 Copynumber: 6.2 Consensus size: 9
365709 CTTTCATACC
365719 AAAAAAACA
1 AAAAAAACA
365728 AAAAAAACAA
1 AAAAAAAC-A
365738 GAAAAAAACAA
1 -AAAAAAAC-A
365749 AAAAAAACA
1 AAAAAAACA
365758 AAAAAAA-A
1 AAAAAAACA
365766 CAAAAAAACA
1 -AAAAAAACA
365776 AA
1 AA
365778 CAAATAAAAA
Statistics
Matches: 46, Mismatches: 0, Indels: 8
0.85 0.00 0.15
Matches are distributed among these distances:
8 1 0.02
9 25 0.54
10 10 0.22
11 10 0.22
ACGTcount: A:0.88, C:0.10, G:0.02, T:0.00
Consensus pattern (9 bp):
AAAAAAACA
Found at i:365734 original size:10 final size:10
Alignment explanation
Indices: 365719--365787 Score: 95
Period size: 10 Copynumber: 6.7 Consensus size: 10
365709 CTTTCATACC
365719 AAAAAAAC-A
1 AAAAAAACAA
365728 AAAAAAACAA
1 AAAAAAACAA
365738 GAAAAAAACAA
1 -AAAAAAACAA
365749 AAAAAAACAA
1 AAAAAAACAA
365759 AAAAAAACAAA
1 AAAAAAAC-AA
365770 AAAACAAACAA
1 AAAA-AAACAA
*
365781 ATAAAAA
1 AAAAAAA
365788 GGGGTCCAGA
Statistics
Matches: 55, Mismatches: 1, Indels: 7
0.87 0.02 0.11
Matches are distributed among these distances:
9 8 0.15
10 22 0.40
11 21 0.38
12 4 0.07
ACGTcount: A:0.87, C:0.10, G:0.01, T:0.01
Consensus pattern (10 bp):
AAAAAAACAA
Found at i:367017 original size:28 final size:28
Alignment explanation
Indices: 366977--367451 Score: 527
Period size: 28 Copynumber: 16.5 Consensus size: 28
366967 CGTTCATCTC
366977 TTCAAAGCCCACAAGTCAGTGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
*
367005 TTCAAAGCCCACAAGTTAGTGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
* * * *
367033 TTCAAAGCCTACGAGTTAGTGGCAACTCTT
1 TTCAAAGCCCACAAGTCAGTGGC-AC-CCT
*
367063 TTCAAAGCCCACAAGTCAGTGGCACTCTT
1 TTCAAAGCCCACAAGTCAGTGGCAC-CCT
* *
367092 TTCAAAGCCCACACGAGTCGGTGGCAACTCTT
1 TTCAAAGCCCACA--AGTCAGTGGC-AC-CCT
* * **
367124 TTCAAAGCCTACAAGTCAGTGACTTCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
* ** *
367152 TTCAAAGCCCACGAGTTGGTGGCAACTCTT
1 TTCAAAGCCCACAAGTCAGTGGC-AC-CCT
* *
367182 TTCAAAGCCCACAAGTCAGTGGTATCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
* *
367210 TTCAAAGCCCACGAGTCAGTGGCAACTCTT
1 TTCAAAGCCCACAAGTCAGTGGC-AC-CCT
*
367240 TTCAAAGCCCACAAGTCAGTGGCATCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
* *
367268 TTCAAAGCCTACAAGTTAGTGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
* *
367296 TTCAAAGCCCACAAGTCAGTGGCATTCTT
1 TTCAAAGCCCACAAGTCAGTGGCA-CCCT
* * *
367325 TTCAAAGCCCATAAGTCAGTGGCATTCTT
1 TTCAAAGCCCACAAGTCAGTGGCA-CCCT
* *
367354 TTCAAAGCCCATAAGTCAGTGGCATCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
*
367382 TTCAAAGCCCACAAGTCAGTGACACCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
*
367410 TTCAAAGCCCACAAGTCAGTGGCACTCTT
1 TTCAAAGCCCACAAGTCAGTGGCAC-CCT
*
367439 TTCAAAGTCCACA
1 TTCAAAGCCCACA
367452 CAAATTGGTG
Statistics
Matches: 386, Mismatches: 50, Indels: 21
0.84 0.11 0.05
Matches are distributed among these distances:
28 192 0.50
29 92 0.24
30 75 0.19
31 9 0.02
32 18 0.05
ACGTcount: A:0.28, C:0.30, G:0.18, T:0.24
Consensus pattern (28 bp):
TTCAAAGCCCACAAGTCAGTGGCACCCT
Found at i:367077 original size:58 final size:58
Alignment explanation
Indices: 366977--367477 Score: 620
Period size: 58 Copynumber: 8.6 Consensus size: 58
366967 CGTTCATCTC
* * *
366977 TTCAAAGCCCACAAGTCAGTGGC-AC-CCTTTCAAAGCCCACAAGTTAGTGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCAACTCTTTTCAAAGCCCACAAGTCAGTGGCATCCT
* * * *
367033 TTCAAAGCCTACGAGTTAGTGGCAACTCTTTTCAAAGCCCACAAGTCAGTGGCACTCTT
1 TTCAAAGCCCACAAGTCAGTGGCAACTCTTTTCAAAGCCCACAAGTCAGTGGCA-TCCT
* * * *
367092 TTCAAAGCCCACACGAGTCGGTGGCAACTCTTTTCAAAGCCTACAAGTCAGTGACTTCCT
1 TTCAAAGCCCACA--AGTCAGTGGCAACTCTTTTCAAAGCCCACAAGTCAGTGGCATCCT
* ** *
367152 TTCAAAGCCCACGAGTTGGTGGCAACTCTTTTCAAAGCCCACAAGTCAGTGGTATCCT
1 TTCAAAGCCCACAAGTCAGTGGCAACTCTTTTCAAAGCCCACAAGTCAGTGGCATCCT
*
367210 TTCAAAGCCCACGAGTCAGTGGCAACTCTTTTCAAAGCCCACAAGTCAGTGGCATCCT
1 TTCAAAGCCCACAAGTCAGTGGCAACTCTTTTCAAAGCCCACAAGTCAGTGGCATCCT
* * * *
367268 TTCAAAGCCTACAAGTTAGTGGC-AC-CCTTTCAAAGCCCACAAGTCAGTGGCATTCTT
1 TTCAAAGCCCACAAGTCAGTGGCAACTCTTTTCAAAGCCCACAAGTCAGTGGCA-TCCT
* * *
367325 TTCAAAGCCCATAAGTCAGTGGC-ATTCTTTTCAAAGCCCATAAGTCAGTGGCATCCT
1 TTCAAAGCCCACAAGTCAGTGGCAACTCTTTTCAAAGCCCACAAGTCAGTGGCATCCT
* * *
367382 TTCAAAGCCCACAAGTCAGTGAC-AC-CCTTTCAAAGCCCACAAGTCAGTGGCACTCTT
1 TTCAAAGCCCACAAGTCAGTGGCAACTCTTTTCAAAGCCCACAAGTCAGTGGCA-TCCT
* ** *
367439 TTCAAAGTCCACACAAATTGGTGGCAACACTTTTCAAAG
1 TTCAAAG-CC-CACAAGTCAGTGGCAACTCTTTTCAAAG
367478 ATCACACAAG
Statistics
Matches: 386, Mismatches: 47, Indels: 19
0.85 0.10 0.04
Matches are distributed among these distances:
56 71 0.18
57 63 0.16
58 167 0.43
59 23 0.06
60 17 0.04
61 45 0.12
ACGTcount: A:0.28, C:0.29, G:0.18, T:0.25
Consensus pattern (58 bp):
TTCAAAGCCCACAAGTCAGTGGCAACTCTTTTCAAAGCCCACAAGTCAGTGGCATCCT
Found at i:367082 original size:86 final size:86
Alignment explanation
Indices: 366977--367451 Score: 609
Period size: 86 Copynumber: 5.5 Consensus size: 86
366967 CGTTCATCTC
* *
366977 TTCAAAGCCCACAAGTCAGTGGCAC-CCTTTCAAAGCCCACAAGTTAGTGGCACCCTTTCAAAGC
1 TTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGC
* * *
367041 CTACGAGTTAGTGGCAACTCTT
66 CCACAAGTCAGTGGC-ACTCTT
* *
367063 TTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACACGAGTCGGTGGCAACTCTTTTCA
1 TTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACA--AGTCAGTGGC-AC-CCTTTCA
* *
367128 AAGCCTACAAGTCAGT-G-ACTTCCT
62 AAGCCCACAAGTCAGTGGCAC-TCTT
* ** * *
367152 TTCAAAGCCCACGAGTTGGTGGCAACTCTTTTCAAAGCCCACAAGTCAGTGGTATCCTTTCAAAG
1 TTCAAAGCCCACAAGTCAGTGGC-ACTCTTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAG
*
367217 CCCACGAGTCAGTGGCAACTCTT
65 CCCACAAGTCAGTGGC-ACTCTT
* * *
367240 TTCAAAGCCCACAAGTCAGTGGCA-TCCTTTCAAAGCCTACAAGTTAGTGGCACCCTTTCAAAGC
1 TTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGC
*
367304 CCACAAGTCAGTGGCATTCTT
66 CCACAAGTCAGTGGCACTCTT
* * * *
367325 TTCAAAGCCCATAAGTCAGTGGCATTCTTTTCAAAGCCCATAAGTCAGTGGCATCCTTTCAAAGC
1 TTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGC
* *
367390 CCACAAGTCAGTGACAC-CCT
66 CCACAAGTCAGTGGCACTCTT
*
367410 TTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGTCCACA
1 TTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACA
367452 CAAATTGGTG
Statistics
Matches: 338, Mismatches: 40, Indels: 23
0.84 0.10 0.06
Matches are distributed among these distances:
85 68 0.20
86 144 0.43
87 18 0.05
88 33 0.10
89 33 0.10
90 22 0.07
91 20 0.06
ACGTcount: A:0.28, C:0.30, G:0.18, T:0.24
Consensus pattern (86 bp):
TTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGC
CCACAAGTCAGTGGCACTCTT
Found at i:368406 original size:20 final size:20
Alignment explanation
Indices: 368383--368439 Score: 96
Period size: 20 Copynumber: 2.9 Consensus size: 20
368373 AAGTACCCAC
*
368383 ATGTATCGATACATTTTTCA
1 ATGTATCGATACATTCTTCA
*
368403 ATGTATCGATATATTCTTCA
1 ATGTATCGATACATTCTTCA
368423 ATGTATCGATACATTCT
1 ATGTATCGATACATTCT
368440 ATCTTTTTAC
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.30, C:0.16, G:0.11, T:0.44
Consensus pattern (20 bp):
ATGTATCGATACATTCTTCA
Found at i:371991 original size:11 final size:11
Alignment explanation
Indices: 371975--371999 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
371965 GGGGTAGGTG
371975 AAGACTAAGAA
1 AAGACTAAGAA
371986 AAGACTAAGAA
1 AAGACTAAGAA
371997 AAG
1 AAG
372000 GGAAGAAGTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.64, C:0.08, G:0.20, T:0.08
Consensus pattern (11 bp):
AAGACTAAGAA
Found at i:372505 original size:2 final size:2
Alignment explanation
Indices: 372493--372536 Score: 79
Period size: 2 Copynumber: 22.0 Consensus size: 2
372483 ATTTTCTCAC
*
372493 AT AT TT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
372535 AT
1 AT
372537 TCCGTGAGAA
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:375580 original size:2 final size:2
Alignment explanation
Indices: 375575--375604 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
375565 TAGAAGATTG
*
375575 AT AT AT AT AT AT AT AC AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
375605 TAATAATATA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:377899 original size:20 final size:19
Alignment explanation
Indices: 377874--377967 Score: 89
Period size: 20 Copynumber: 4.7 Consensus size: 19
377864 TTTTCACAAT
377874 TTGTATCGATACACTACTCA
1 TTGTATCGATACA-TACTCA
**
377894 TTGTATCGATACATTTTGCA
1 TTGTATCGATACATACT-CA
* *
377914 TTGTATTGATACATTGCTCA
1 TTGTATCGATACA-TACTCA
**
377934 TTGTATCGATACATTTTACA
1 TTGTATCGATACATACT-CA
*
377954 ATGTATCGATACAT
1 TTGTATCGATACAT
377968 CGATACATTC
Statistics
Matches: 62, Mismatches: 9, Indels: 6
0.81 0.12 0.08
Matches are distributed among these distances:
19 4 0.06
20 56 0.90
21 2 0.03
ACGTcount: A:0.29, C:0.17, G:0.13, T:0.41
Consensus pattern (19 bp):
TTGTATCGATACATACTCA
Found at i:377967 original size:40 final size:40
Alignment explanation
Indices: 377875--377967 Score: 141
Period size: 40 Copynumber: 2.3 Consensus size: 40
377865 TTTCACAATT
* * *
377875 TGTATCGATACACTACTCATTGTATCGATACATTTTGCAT
1 TGTATCGATACATTACTCATTGTATCGATACATTTTACAA
* *
377915 TGTATTGATACATTGCTCATTGTATCGATACATTTTACAA
1 TGTATCGATACATTACTCATTGTATCGATACATTTTACAA
377955 TGTATCGATACAT
1 TGTATCGATACAT
377968 CGATACATTC
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 47 1.00
ACGTcount: A:0.29, C:0.17, G:0.13, T:0.41
Consensus pattern (40 bp):
TGTATCGATACATTACTCATTGTATCGATACATTTTACAA
Found at i:379126 original size:13 final size:13
Alignment explanation
Indices: 379108--379133 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
379098 AATTTGGTCA
379108 TGTATCGATACAT
1 TGTATCGATACAT
379121 TGTATCGATACAT
1 TGTATCGATACAT
379134 CTTGTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:379240 original size:20 final size:21
Alignment explanation
Indices: 379193--379245 Score: 65
Period size: 20 Copynumber: 2.6 Consensus size: 21
379183 GCCAATCACC
*
379193 TGTATCGATACATTCTTTGCA
1 TGTATCGATACATTCTGTGCA
*
379214 AGTATCGATACATT-TG-GTCA
1 TGTATCGATACATTCTGTG-CA
379234 TGTATCGATACA
1 TGTATCGATACA
379246 ATGTATCGAT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
19 1 0.04
20 14 0.50
21 13 0.46
ACGTcount: A:0.28, C:0.17, G:0.17, T:0.38
Consensus pattern (21 bp):
TGTATCGATACATTCTGTGCA
Found at i:379251 original size:13 final size:13
Alignment explanation
Indices: 379233--379257 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
379223 ACATTTGGTC
379233 ATGTATCGATACA
1 ATGTATCGATACA
379246 ATGTATCGATAC
1 ATGTATCGATAC
379258 TGTGCATTCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:379858 original size:23 final size:22
Alignment explanation
Indices: 379811--379855 Score: 74
Period size: 22 Copynumber: 2.0 Consensus size: 22
379801 TTTCCTTTTC
379811 TCTCCCCCTTAATCAAAAAATT
1 TCTCCCCCTTAATCAAAAAATT
379833 TCTCCCCCTTAAT-AAAACAATT
1 TCTCCCCCTTAATCAAAA-AATT
379855 T
1 T
379856 TCTTTAATCA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
21 4 0.18
22 18 0.82
ACGTcount: A:0.36, C:0.31, G:0.00, T:0.33
Consensus pattern (22 bp):
TCTCCCCCTTAATCAAAAAATT
Found at i:379901 original size:48 final size:48
Alignment explanation
Indices: 379844--379940 Score: 185
Period size: 48 Copynumber: 2.0 Consensus size: 48
379834 CTCCCCCTTA
379844 ATAAAACAATTTTCTTTAATCATATGTTTCTTTCACCCCCTTAATCAT
1 ATAAAACAATTTTCTTTAATCATATGTTTCTTTCACCCCCTTAATCAT
*
379892 ATAAAACAATTTTCTTTAATCATATGTTTCTTTCTCCCCCTTAATCAT
1 ATAAAACAATTTTCTTTAATCATATGTTTCTTTCACCCCCTTAATCAT
379940 A
1 A
379941 AAATTATTTA
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 48 1.00
ACGTcount: A:0.31, C:0.23, G:0.02, T:0.44
Consensus pattern (48 bp):
ATAAAACAATTTTCTTTAATCATATGTTTCTTTCACCCCCTTAATCAT
Found at i:386307 original size:3 final size:3
Alignment explanation
Indices: 386299--386332 Score: 59
Period size: 3 Copynumber: 11.3 Consensus size: 3
386289 TCTGAGTCAC
*
386299 CAT CAT CAT CAT CAT CAT CAT CAT CAT CTT CAT C
1 CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT C
386333 GTCCTTGATG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.29, C:0.35, G:0.00, T:0.35
Consensus pattern (3 bp):
CAT
Found at i:387976 original size:19 final size:19
Alignment explanation
Indices: 387952--388014 Score: 84
Period size: 19 Copynumber: 3.6 Consensus size: 19
387942 ATCAATACAT
387952 TGTATCGATACATCTTGTG
1 TGTATCGATACATCTTGTG
387971 TGTATCGATACA-----T-
1 TGTATCGATACATCTTGTG
387984 TGTATCGATACATCTTGTG
1 TGTATCGATACATCTTGTG
388003 TGTATCGATACA
1 TGTATCGATACA
388015 AATAGTTAAG
Statistics
Matches: 38, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
13 12 0.32
14 1 0.03
18 1 0.03
19 24 0.63
ACGTcount: A:0.25, C:0.16, G:0.19, T:0.40
Consensus pattern (19 bp):
TGTATCGATACATCTTGTG
Found at i:387982 original size:32 final size:32
Alignment explanation
Indices: 387939--388014 Score: 143
Period size: 32 Copynumber: 2.4 Consensus size: 32
387929 AATTTGGTCA
*
387939 TGTATCAATACATTGTATCGATACATCTTGTG
1 TGTATCGATACATTGTATCGATACATCTTGTG
387971 TGTATCGATACATTGTATCGATACATCTTGTG
1 TGTATCGATACATTGTATCGATACATCTTGTG
388003 TGTATCGATACA
1 TGTATCGATACA
388015 AATAGTTAAG
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
32 43 1.00
ACGTcount: A:0.28, C:0.16, G:0.17, T:0.39
Consensus pattern (32 bp):
TGTATCGATACATTGTATCGATACATCTTGTG
Found at i:387989 original size:13 final size:13
Alignment explanation
Indices: 387971--387996 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
387961 ACATCTTGTG
387971 TGTATCGATACAT
1 TGTATCGATACAT
387984 TGTATCGATACAT
1 TGTATCGATACAT
387997 CTTGTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:388103 original size:20 final size:21
Alignment explanation
Indices: 388056--388108 Score: 65
Period size: 20 Copynumber: 2.6 Consensus size: 21
388046 GCCAATCACC
*
388056 TGTATCGATACATTCTTTGCA
1 TGTATCGATACATTCTGTGCA
*
388077 AGTATCGATACATT-TG-GTCA
1 TGTATCGATACATTCTGTG-CA
388097 TGTATCGATACA
1 TGTATCGATACA
388109 ATGTATCGAT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
19 1 0.04
20 14 0.50
21 13 0.46
ACGTcount: A:0.28, C:0.17, G:0.17, T:0.38
Consensus pattern (21 bp):
TGTATCGATACATTCTGTGCA
Found at i:388114 original size:13 final size:13
Alignment explanation
Indices: 388096--388120 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
388086 ACATTTGGTC
388096 ATGTATCGATACA
1 ATGTATCGATACA
388109 ATGTATCGATAC
1 ATGTATCGATAC
388121 TGTGCATTCG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:390452 original size:51 final size:52
Alignment explanation
Indices: 390366--390483 Score: 132
Period size: 51 Copynumber: 2.3 Consensus size: 52
390356 ATTTTTCATC
* * * * * *
390366 TCGGGGATACTCC-AGTCTCGGTTTCATTTCCAAAACATCAATTTTTCTTAA
1 TCGGGGATACTCCAACTCTCGATTTCATATCCAAAACACCAATTTTCCATAA
* * *
390417 TCGGGGATACTCCAACTC-CGATTTTATATCTAAAACACCCATTTTCCATAA
1 TCGGGGATACTCCAACTCTCGATTTCATATCCAAAACACCAATTTTCCATAA
*
390468 TCGGGGACACTCCAAC
1 TCGGGGATACTCCAAC
390484 CCCAGTTTTT
Statistics
Matches: 56, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
51 53 0.95
52 3 0.05
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.31
Consensus pattern (52 bp):
TCGGGGATACTCCAACTCTCGATTTCATATCCAAAACACCAATTTTCCATAA
Found at i:390593 original size:79 final size:79
Alignment explanation
Indices: 390498--390664 Score: 237
Period size: 79 Copynumber: 2.1 Consensus size: 79
390488 GTTTTTTTTC
* ** *
390498 ATCGGGGATACTCCAACCCCACTATTTTCGAGGGGATACCCCAACCTTGACTTTATTTCTAAAAT
1 ATCGGGGATACTCCAACCCCACTATTTTCGAGGGAATACCCCAACCCCGACTTTATTTCTAAAAC
*
390563 ATTAA-TTTCTCATA
66 ATCAATTTTC-CATA
** * *
390577 ATCGGGGATACTCCAACCCCGTTATTTTCGAGGGAATACTCCAACCCCGATTTTATTTCTAAAAC
1 ATCGGGGATACTCCAACCCCACTATTTTCGAGGGAATACCCCAACCCCGACTTTATTTCTAAAAC
390642 ATCAATTTTCCATA
66 ATCAATTTTCCATA
390656 ATCGGGGAT
1 ATCGGGGAT
390665 GCTCTAACTC
Statistics
Matches: 78, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
79 74 0.95
80 4 0.05
ACGTcount: A:0.29, C:0.25, G:0.14, T:0.32
Consensus pattern (79 bp):
ATCGGGGATACTCCAACCCCACTATTTTCGAGGGAATACCCCAACCCCGACTTTATTTCTAAAAC
ATCAATTTTCCATA
Found at i:392695 original size:734 final size:726
Alignment explanation
Indices: 391287--392751 Score: 2506
Period size: 734 Copynumber: 2.0 Consensus size: 726
391277 CAAAACTTCA
*
391287 TGCATTAGAGGGAATTACATCTAAGTAATGATAAAAATGGAATCGAGAAAATCAAGATCTAAGTA
1 TGCATTAGAGGGAATTACATCTAAGTAATGATAAAAACGGAATCGAGAAAATCAAGATCTAAGTA
* *
391352 AGACATAGTTAGAAGGTACCGATTTCGGGCATCGTGGGGGTGCTAATCTTTCCCCATGCGTAACC
66 AGACATAGTTAGAAGGTACCGATTTCGGGCATCGTGGGGGTGCTAATCCTTCCCCACGCGTAACC
391417 AACTCCGTAACCCAAACACGAATCTCTGAATTACGTAGACCGCGAGATCAATGTTTCGAGTTTCG
131 AACTCCGTAACCCAAACACGAATCTCTGAATTACGTAGACCGCGAGATCAATGTTTCGAGTTTCG
* *
391482 TGACTCGAAACATAGGTTTCAATAGGCATCCAATCACGCCTAGCCCGAAATGATCGGTGGTGACT
196 TGACTCAAAACATAGGTTTCAATAGGCATCCAATCACGCCTAGCCCGAAATGATCGGTGGCGACT
*
391547 CCAAGTTCATAGTCATTTCGTAATGACCACCCGAGACTTATAGGAAGAGCGATTCGTCCGATGGT
261 CCAAGTTCATAGTCATTTCGTAATGACCACCCGAGACTTATAGGAAGAGCGATTCGTCCGATGAT
* * *
391612 CTTTCACCCTCGCATATTGACTATCCCCTTTTATTTTAAATCGAGTGAGCTTTGGCTCTTTGGAT
326 CTTTCACCCTCGCATATTGACTATCCCCTTTTATTTTAAATCAAGCGAGCTTTGGCTCTTCGGAT
391677 CGTTCGAAGTTTCCTTAAAAGCTAAGCGCACGTTGCGACAAGATGGATTAAAACCTCAGGCCAAA
391 CGTTCGAAGTTTCCTTAAAAGCTAAGCGCACGTTGCGACAAGATGGATTAAAACCTCAGGCCAAA
391742 CAAGAGTTGCAATGAAGAGGTGCTCAGGACTTGACCAAAGCCATGATGACAACAAAGTCCTTAAT
456 CAAGAGTTGCAATGAAGAGGTGCTCAGGACTTGACCAAAGCCATGATGACAACAAAGTCCTTAAT
* *
391807 AGAGTTTGGCACAAAAGAGTTAGATAAGTCCGAGTCTTCCAAGCTGAAGATCAAGGGCAATTATA
521 AGAGTTTGGCACAAAAAAGTTAGATAAGTCCGAGTCTTCCAAGCCGAAGATCAAGGGCAATTATA
*
391872 GGGGAGTCAAAGTCAAAGATCAAAAAGCCAAAATTGGTGATGAAAAATCACTAATTGTGAAGCCA
586 GAGGAG---AAGTCAAAGATCAAAAAGCCAAAATTGGTGATGAAAAATCACTAATTGTGAAGCCA
391937 AAGTCCTACAAGTTGTGGGAGAAAGATAAAGATGGGGAACCGGTGAAATGCTTCCTATGTAATGG
648 AAGTCCTACAAGTTGT-GGAG--AG--AAAGATGGGGAACCGGTGAAATGCTTCCTATGTAATGG
392002 TCCGCATTAGATGCAAGAC
708 TCCGCATTAGATGCAAGAC
392021 TGCATTAGAGGGAATTACATCTAAGTAATGATAAAAACGGAATCGAGAAAATCAAGATCTAAGTA
1 TGCATTAGAGGGAATTACATCTAAGTAATGATAAAAACGGAATCGAGAAAATCAAGATCTAAGTA
* *
392086 AGATATAGTTAGAAGGTACCGATTTCGGGCGTCGTGGGGGTGCTAATCCTTCCCCACGCGTAACC
66 AGACATAGTTAGAAGGTACCGATTTCGGGCATCGTGGGGGTGCTAATCCTTCCCCACGCGTAACC
*
392151 AACTCCCG-AACCCAAACACGAATCTCTGAATTACGTAGACCGCGAGATCAATGTTTCGAGTTTT
131 AACT-CCGTAACCCAAACACGAATCTCTGAATTACGTAGACCGCGAGATCAATGTTTCGAGTTTC
** *
392215 GTGACTCAAAACATAGGTTTCAATAGGCATCTGATCATGCCTAGCCCGAAATGATCGGTGGCGAC
195 GTGACTCAAAACATAGGTTTCAATAGGCATCCAATCACGCCTAGCCCGAAATGATCGGTGGCGAC
* * *
392280 TCCAAGTTCATGGTTATTTCGTAATGACCACCCGAGACTTATAGGACGAGCGATTCGTCCGATGA
260 TCCAAGTTCATAGTCATTTCGTAATGACCACCCGAGACTTATAGGAAGAGCGATTCGTCCGATGA
*
392345 TCTTTCACCCTCGCATATTGACTATCCCCTTTTATTTTAAGTCAAGCGAGCTTTGGCTCTTCGGA
325 TCTTTCACCCTCGCATATTGACTATCCCCTTTTATTTTAAATCAAGCGAGCTTTGGCTCTTCGGA
* *
392410 TCGTTCGAAGTTTCCTTAAAAGCTGAGCGCACGTTGCGACAAGATGGATTATAACCTCAGGCCAA
390 TCGTTCGAAGTTTCCTTAAAAGCTAAGCGCACGTTGCGACAAGATGGATTAAAACCTCAGGCCAA
* * *
392475 ACAAGAGTTGCAATGAAGAGGTGTTCAGGACTTGACCAAAGCCATGATGACGACGAAGTCCTTAA
455 ACAAGAGTTGCAATGAAGAGGTGCTCAGGACTTGACCAAAGCCATGATGACAACAAAGTCCTTAA
*
392540 TAGAGTTTGGCACAAAAAAGTTAGATAAGTCCGAGTCTTCCAAGCCGAAGATCAAGGGTAATTAT
520 TAGAGTTTGGCACAAAAAAGTTAGATAAGTCCGAGTCTTCCAAGCCGAAGATCAAGGGCAATTAT
*
392605 A-AGG-G-AGTCAAAGATCAAAAGGCCAAAATTGGTGATGAAAAATCACTAATTGTGAAGCCAAA
585 AGAGGAGAAGTCAAAGATCAAAAAGCCAAAATTGGTGATGAAAAATCACTAATTGTGAAGCCAAA
392667 GTCCTACAAGTTGTGGGAGAAAGAGAAAGATGGGGAACCGGTGAAATGCTTCCTATGTAATGGTC
650 GTCCTACAAGTTGT--G-G--AGAGAAAGATGGGGAACCGGTGAAATGCTTCCTATGTAATGGTC
*
392732 CGCGTTAGATGCAAGAC
710 CGCATTAGATGCAAGAC
392749 TGC
1 TGC
392752 CTAAAACGAG
Statistics
Matches: 696, Mismatches: 30, Indels: 16
0.94 0.04 0.02
Matches are distributed among these distances:
728 129 0.19
729 2 0.00
730 3 0.00
732 3 0.00
733 2 0.00
734 554 0.80
735 3 0.00
ACGTcount: A:0.32, C:0.20, G:0.23, T:0.25
Consensus pattern (726 bp):
TGCATTAGAGGGAATTACATCTAAGTAATGATAAAAACGGAATCGAGAAAATCAAGATCTAAGTA
AGACATAGTTAGAAGGTACCGATTTCGGGCATCGTGGGGGTGCTAATCCTTCCCCACGCGTAACC
AACTCCGTAACCCAAACACGAATCTCTGAATTACGTAGACCGCGAGATCAATGTTTCGAGTTTCG
TGACTCAAAACATAGGTTTCAATAGGCATCCAATCACGCCTAGCCCGAAATGATCGGTGGCGACT
CCAAGTTCATAGTCATTTCGTAATGACCACCCGAGACTTATAGGAAGAGCGATTCGTCCGATGAT
CTTTCACCCTCGCATATTGACTATCCCCTTTTATTTTAAATCAAGCGAGCTTTGGCTCTTCGGAT
CGTTCGAAGTTTCCTTAAAAGCTAAGCGCACGTTGCGACAAGATGGATTAAAACCTCAGGCCAAA
CAAGAGTTGCAATGAAGAGGTGCTCAGGACTTGACCAAAGCCATGATGACAACAAAGTCCTTAAT
AGAGTTTGGCACAAAAAAGTTAGATAAGTCCGAGTCTTCCAAGCCGAAGATCAAGGGCAATTATA
GAGGAGAAGTCAAAGATCAAAAAGCCAAAATTGGTGATGAAAAATCACTAATTGTGAAGCCAAAG
TCCTACAAGTTGTGGAGAGAAAGATGGGGAACCGGTGAAATGCTTCCTATGTAATGGTCCGCATT
AGATGCAAGAC
Found at i:398422 original size:20 final size:21
Alignment explanation
Indices: 398399--398449 Score: 52
Period size: 20 Copynumber: 2.5 Consensus size: 21
398389 TTCAAGTATA
398399 TATCAATACATTCA-CTTA-TG
1 TATCAATACATT-AGCTTATTG
* *
398419 TATCGATATATTAGCTTATTG
1 TATCAATACATTAGCTTATTG
*
398440 CATCAATACA
1 TATCAATACA
398450 AATTGTAAAA
Statistics
Matches: 24, Mismatches: 5, Indels: 3
0.75 0.16 0.09
Matches are distributed among these distances:
19 1 0.04
20 14 0.58
21 9 0.38
ACGTcount: A:0.35, C:0.18, G:0.08, T:0.39
Consensus pattern (21 bp):
TATCAATACATTAGCTTATTG
Found at i:400041 original size:2 final size:2
Alignment explanation
Indices: 400034--400063 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
400024 AAGCAAGTTT
400034 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
400064 CAGACAGAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:402560 original size:6 final size:6
Alignment explanation
Indices: 402474--402542 Score: 69
Period size: 6 Copynumber: 12.2 Consensus size: 6
402464 AAAATCAAAC
*
402474 TAAATTT TAAA-T TAAATT TAAATT TAAATT TAAATT T---TT TATTATT
1 TAAA-TT TAAATT TAAATT TAAATT TAAATT TAAATT TAAATT TA-AATT
402520 TAAATT T-AATT T-AATT TAAATT T
1 TAAATT TAAATT TAAATT TAAATT T
402543 TTTATTATTT
Statistics
Matches: 55, Mismatches: 1, Indels: 13
0.80 0.01 0.19
Matches are distributed among these distances:
3 3 0.05
5 15 0.27
6 29 0.53
7 8 0.15
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (6 bp):
TAAATT
Found at i:402568 original size:16 final size:16
Alignment explanation
Indices: 402479--402572 Score: 88
Period size: 16 Copynumber: 5.8 Consensus size: 16
402469 CAAACTAAAT
*
402479 TTTAAATTAAATTTAAA
1 TTTAATTTAAATTT-AA
402496 TTTAAATTTAAATTT--
1 TTT-AATTTAAATTTAA
402511 TTTATTATTTAAATTTAA
1 TTTA--ATTTAAATTTAA
402529 TTTAATTTAAATTT--
1 TTTAATTTAAATTTAA
402543 TTTATTATTTAAATTTAA
1 TTTA--ATTTAAATTTAA
*
402561 TTCAATTTAAAT
1 TTTAATTTAAAT
402573 ATACTTTAAG
Statistics
Matches: 66, Mismatches: 2, Indels: 19
0.76 0.02 0.22
Matches are distributed among these distances:
14 5 0.08
15 3 0.05
16 38 0.58
17 3 0.05
18 17 0.26
ACGTcount: A:0.41, C:0.01, G:0.00, T:0.57
Consensus pattern (16 bp):
TTTAATTTAAATTTAA
Found at i:405703 original size:14 final size:15
Alignment explanation
Indices: 405684--405712 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
405674 GAAAAATTTT
405684 AATTAT-ATATTAAA
1 AATTATAATATTAAA
405698 AATTATAATATTAAA
1 AATTATAATATTAAA
405713 TTATATTTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (15 bp):
AATTATAATATTAAA
Found at i:405725 original size:8 final size:9
Alignment explanation
Indices: 405712--405749 Score: 51
Period size: 8 Copynumber: 4.1 Consensus size: 9
405702 ATAATATTAA
405712 ATTATATTT
1 ATTATATTT
405721 A-TATATTT
1 ATTATATTT
405729 ATTAATTATTT
1 ATT-A-TATTT
405740 ATTATATTT
1 ATTATATTT
405749 A
1 A
405750 ATAATAAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
8 8 0.31
9 8 0.31
10 2 0.08
11 8 0.31
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (9 bp):
ATTATATTT
Found at i:405744 original size:28 final size:28
Alignment explanation
Indices: 405712--405795 Score: 79
Period size: 28 Copynumber: 3.0 Consensus size: 28
405702 ATAATATTAA
405712 ATTATATTTATATATTTATTAATTATTT
1 ATTATATTTATATATTTATTAATTATTT
* *
405740 ATTATATTTA-ATA-ATA-AAATT-TTT
1 ATTATATTTATATATTTATTAATTATTT
405764 ATTTAATATTT-TATATTTTACTTAATTATTT
1 A-TT-ATATTTATATA-TTTA-TTAATTATTT
405795 A
1 A
405796 ATTTAATTAA
Statistics
Matches: 44, Mismatches: 4, Indels: 13
0.72 0.07 0.21
Matches are distributed among these distances:
24 4 0.09
25 6 0.14
26 11 0.25
27 3 0.07
28 12 0.27
30 4 0.09
31 4 0.09
ACGTcount: A:0.38, C:0.01, G:0.00, T:0.61
Consensus pattern (28 bp):
ATTATATTTATATATTTATTAATTATTT
Found at i:405745 original size:55 final size:55
Alignment explanation
Indices: 405685--405795 Score: 129
Period size: 55 Copynumber: 2.0 Consensus size: 55
405675 AAAAATTTTA
*
405685 ATTATATATTAAAAATTATAATATTAAATT-ATA-TTTATATATTTA-TTAATTATTT
1 ATTATAT-TTAAAAA-TAAAATATTAAATTAATATTTTATAT-TTTACTTAATTATTT
* * * *
405740 ATTATATTTAATAATAAAATTTTTATTTAATATTTTATATTTTACTTAATTATTT
1 ATTATATTTAAAAATAAAATATTAAATTAATATTTTATATTTTACTTAATTATTT
405795 A
1 A
405796 ATTTAATTAA
Statistics
Matches: 48, Mismatches: 5, Indels: 6
0.81 0.08 0.10
Matches are distributed among these distances:
53 10 0.21
54 13 0.27
55 25 0.52
ACGTcount: A:0.42, C:0.01, G:0.00, T:0.57
Consensus pattern (55 bp):
ATTATATTTAAAAATAAAATATTAAATTAATATTTTATATTTTACTTAATTATTT
Found at i:405747 original size:20 final size:19
Alignment explanation
Indices: 405716--405754 Score: 60
Period size: 20 Copynumber: 2.0 Consensus size: 19
405706 TATTAAATTA
*
405716 TATTTATATATTTATTAAT
1 TATTTATATATTTAATAAT
405735 TATTTATTATATTTAATAAT
1 TATTTA-TATATTTAATAAT
405755 AAAATTTTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 6 0.33
20 12 0.67
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (19 bp):
TATTTATATATTTAATAAT
Found at i:407566 original size:2 final size:2
Alignment explanation
Indices: 407559--407594 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
407549 AAATAAATAA
407559 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
407595 CAAAGTCAAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:411821 original size:20 final size:21
Alignment explanation
Indices: 411796--411835 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
411786 TGAGATGCTG
*
411796 AACAT-ATTAAAAATGCATGA
1 AACATAATAAAAAATGCATGA
411816 AACATAATAAAAAATGCATG
1 AACATAATAAAAAATGCATG
411836 GCCAAAGGCT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.57, C:0.10, G:0.10, T:0.23
Consensus pattern (21 bp):
AACATAATAAAAAATGCATGA
Found at i:412769 original size:20 final size:20
Alignment explanation
Indices: 412744--412820 Score: 118
Period size: 20 Copynumber: 3.9 Consensus size: 20
412734 GTAAAAAGAT
412744 AAAATGTATCGATACATTGA
1 AAAATGTATCGATACATTGA
* *
412764 AAAATGTATCAATACATTCA
1 AAAATGTATCGATACATTGA
* *
412784 TACATGTATCGATACATTGA
1 AAAATGTATCGATACATTGA
412804 AAAATGTATCGATACAT
1 AAAATGTATCGATACAT
412821 CTAGGTGCTT
Statistics
Matches: 49, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 49 1.00
ACGTcount: A:0.44, C:0.13, G:0.12, T:0.31
Consensus pattern (20 bp):
AAAATGTATCGATACATTGA
Found at i:413628 original size:49 final size:48
Alignment explanation
Indices: 413502--413682 Score: 274
Period size: 48 Copynumber: 3.8 Consensus size: 48
413492 AGAGGAGTGC
*
413502 CAATGTG-TCAATTCAAGGCCAACGACATCGAGCTAAGGGAAAAGTGGA
1 CAATGTGCT-AATTCAAGGCCAACGACATTGAGCTAAGGGAAAAGTGGA
* *
413550 CAATGTGTTGATTCAAGGCCAACGACATTGAGCTAAGGGAAAAGTGGA
1 CAATGTGCTAATTCAAGGCCAACGACATTGAGCTAAGGGAAAAGTGGA
* * *
413598 TAATAGTGCTAATTCAAGGCCAATGACATTGAGCTAAGGGAAAAGTTGA
1 CAAT-GTGCTAATTCAAGGCCAACGACATTGAGCTAAGGGAAAAGTGGA
*
413647 CAATGTGCTGATTCAAGGCCAACGACATTGAGCTAA
1 CAATGTGCTAATTCAAGGCCAACGACATTGAGCTAA
413683 TAAAGGTGCC
Statistics
Matches: 121, Mismatches: 10, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
48 77 0.64
49 44 0.36
ACGTcount: A:0.36, C:0.17, G:0.26, T:0.21
Consensus pattern (48 bp):
CAATGTGCTAATTCAAGGCCAACGACATTGAGCTAAGGGAAAAGTGGA
Found at i:413960 original size:28 final size:28
Alignment explanation
Indices: 413829--414462 Score: 455
Period size: 28 Copynumber: 21.8 Consensus size: 28
413819 TGCTGACTTG
*
413829 TGTGGGCTTTG-AAGGATGTCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
413856 TGTGGGCTTT-AAAAGA-GCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
413882 TGTGGGCTTTGAAAAGATGCCATTGATT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
413910 TGTATGGGCTTTGAGAAGGATGCCACTGACT
1 TG--TGGGCTTTGA-AAGGATGCCACTGACT
*
413941 TGTCGGCTTTGAAAGGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
413969 TGTGGGCTTTGAAAGGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
413997 TGTGGGCTTCGAAAGGATGCCACTTA-T
1 TGTGGGCTTTGAAAGGATGCCACTGACT
414024 CTGTGGGCTTTGAGAAGGATGCCA-TCGACT
1 -TGTGGGCTTTGA-AAGGATGCCACT-GACT
414054 TGTGGGCTTTGAAAAGGATGCCACTGACT
1 TGTGGGCTTTG-AAAGGATGCCACTGACT
414083 TGTGGGCTTTGAAAGGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
414111 TGTGGGCTTTGAAATGGGTTGCCA-TCGACTT
1 TGTGGGCTTTGAAA--GGATGCCACT-GAC-T
* *
414142 GTGTGGGCTTTGAAATGAGTTGCCACCGACTT
1 -TGTGGGCTTTGAAA-G-GATGCCACTGAC-T
* ** *
414174 GTGTGGGCTTT-AAATGGGATTGCTACCAATTT
1 -TGTGGGCTTTGAAA--GGA-TGCCACTGA-CT
* * * *
414206 GTGTGGGCTTTCAAATGAGTTACCACCGACTTT
1 -TGTGGGCTTTGAAA-G-GATGCCACTGAC--T
* *
414239 TGTGGGCTTTGAAATGGGTTGCCACCGACTT
1 TGTGGGCTTTGAAA--GGATGCCACTGAC-T
* * *
414270 GTGTGGGCTTTCAAATGAGTTGCCACCGACT
1 -TGTGGGCTTTGAAA-G-GATGCCACTGACT
** * *
414301 TGTATGGGCTTAAAAAGGGGTACCACTGACT
1 TG--TGGGCTTTGAAA-GGATGCCACTGACT
* * *
414332 TGTAGGCTTTGGAAGGGTGCCA-TGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* ** *
414359 TGT-AGCTTAAAAAGGATGCCAC-GAAGT
1 TGTGGGCTTTGAAAGGATGCCACTG-ACT
* * *
414386 TGTGGACTTTGGAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
** * *
414414 TGTGGGCTTAAAAAGGATGTCAC-GAAGT
1 TGTGGGCTTTGAAAGGATGCCACTG-ACT
* *
414442 TGTGGAC-TTAAAAGGATGCCA
1 TGTGGGCTTTGAAAGGATGCCA
414463 TGGAGTTGTG
Statistics
Matches: 503, Mismatches: 68, Indels: 72
0.78 0.11 0.11
Matches are distributed among these distances:
26 32 0.06
27 47 0.09
28 166 0.33
29 66 0.13
30 25 0.05
31 37 0.07
32 124 0.25
33 6 0.01
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.30
Consensus pattern (28 bp):
TGTGGGCTTTGAAAGGATGCCACTGACT
Found at i:414071 original size:142 final size:140
Alignment explanation
Indices: 413829--414124 Score: 445
Period size: 142 Copynumber: 2.1 Consensus size: 140
413819 TGCTGACTTG
* *
413829 TGTGGGCTTTG-AAGGATGTCACTGACTTGTGGGCTTTAAAAGAGCCACTAACTTGTGGGCTTTG
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTGAAAAGAGCCACTAACTTGTGGGCTTTG
* * *
413893 AAAAGATGCCATTGATTTGTATGGGCTTTGAGAAGGATGCCACTGACTTGTCGGCTTTGAAAGGA
66 AAAAGATGCCATCGACTTG-ATGGGCTTTGAAAAGGATGCCACTGACTTGTCGGCTTTGAAAGGA
413958 TGCCACTGACT
130 TGCCACTGACT
* *
413969 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTCGAAAGGATGCCACTTA-TCTGTGGGCT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTT-GAAAAGA-GCCACTAACT-TGTGGGCT
* *
414033 TTGAGAAGGATGCCATCGACTTG-TGGGCTTTGAAAAGGATGCCACTGACTTGTGGGCTTTGAAA
63 TTGA-AAAGATGCCATCGACTTGATGGGCTTTGAAAAGGATGCCACTGACTTGTCGGCTTTGAAA
414097 GGATGCCACTGACT
127 GGATGCCACTGACT
414111 TGTGGGCTTTGAAA
1 TGTGGGCTTTGAAA
414125 TGGGTTGCCA
Statistics
Matches: 142, Mismatches: 9, Indels: 8
0.89 0.06 0.05
Matches are distributed among these distances:
140 11 0.08
141 24 0.17
142 73 0.51
143 19 0.13
144 15 0.11
ACGTcount: A:0.23, C:0.17, G:0.31, T:0.30
Consensus pattern (140 bp):
TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTGAAAAGAGCCACTAACTTGTGGGCTTTG
AAAAGATGCCATCGACTTGATGGGCTTTGAAAAGGATGCCACTGACTTGTCGGCTTTGAAAGGAT
GCCACTGACT
Found at i:414152 original size:32 final size:32
Alignment explanation
Indices: 414025--414311 Score: 301
Period size: 32 Copynumber: 9.3 Consensus size: 32
414015 GCCACTTATC
* *
414025 TGTGGGCTTTGAGAA--GGATGCCATCGAC-T-
1 TGTGGGCTTTGA-AATGGGTTGCCACCGACTTG
* * *
414054 TGTGGGCTTTGAAA-AGGATGCCACTGAC-T-
1 TGTGGGCTTTGAAATGGGTTGCCACCGACTTG
* *
414083 TGTGGGCTTTGAAA--GGATGCCACTGAC-T-
1 TGTGGGCTTTGAAATGGGTTGCCACCGACTTG
*
414111 TGTGGGCTTTGAAATGGGTTGCCATCGACTTG
1 TGTGGGCTTTGAAATGGGTTGCCACCGACTTG
*
414143 TGTGGGCTTTGAAATGAGTTGCCACCGACTTG
1 TGTGGGCTTTGAAATGGGTTGCCACCGACTTG
* * *
414175 TGTGGGCTTT-AAATGGGATTGCTACCAATTTG
1 TGTGGGCTTTGAAATGGG-TTGCCACCGACTTG
* * * *
414207 TGTGGGCTTTCAAATGAGTTACCACCGACTTT
1 TGTGGGCTTTGAAATGGGTTGCCACCGACTTG
414239 TGTGGGCTTTGAAATGGGTTGCCACCGACTTG
1 TGTGGGCTTTGAAATGGGTTGCCACCGACTTG
* *
414271 TGTGGGCTTTCAAATGAGTTGCCACCGACTTG
1 TGTGGGCTTTGAAATGGGTTGCCACCGACTTG
*
414303 TATGGGCTT
1 TGTGGGCTT
414312 AAAAAGGGGT
Statistics
Matches: 227, Mismatches: 24, Indels: 11
0.87 0.09 0.04
Matches are distributed among these distances:
28 30 0.13
29 38 0.17
30 10 0.04
31 7 0.03
32 136 0.60
33 6 0.03
ACGTcount: A:0.20, C:0.18, G:0.31, T:0.32
Consensus pattern (32 bp):
TGTGGGCTTTGAAATGGGTTGCCACCGACTTG
Found at i:414469 original size:27 final size:27
Alignment explanation
Indices: 414368--414490 Score: 124
Period size: 28 Copynumber: 4.5 Consensus size: 27
414358 TTGTAGCTTA
414368 AAAAGGATGCCACGAAGTTGTGGACTTT
1 AAAAGGATGCCACGAAGTTGTGGAC-TT
** * * *
414396 GGAAGGGTGCCACTG-ACTTGTGGGCTT
1 AAAAGGATGCCAC-GAAGTTGTGGACTT
*
414423 AAAAAGGATGTCACGAAGTTGTGGACTT
1 -AAAAGGATGCCACGAAGTTGTGGACTT
* *
414451 AAAAGGATGCCATGGAGTTGTGGACTT
1 AAAAGGATGCCACGAAGTTGTGGACTT
414478 AAAA-GAGTGCCAC
1 AAAAGGA-TGCCAC
414491 TGATGCGCTT
Statistics
Matches: 76, Mismatches: 15, Indels: 9
0.76 0.15 0.09
Matches are distributed among these distances:
26 2 0.03
27 36 0.47
28 37 0.49
29 1 0.01
ACGTcount: A:0.30, C:0.15, G:0.32, T:0.24
Consensus pattern (27 bp):
AAAAGGATGCCACGAAGTTGTGGACTT
Found at i:419630 original size:20 final size:20
Alignment explanation
Indices: 419605--419681 Score: 111
Period size: 20 Copynumber: 3.9 Consensus size: 20
419595 GTAAAAATAT
419605 AGAATGTATCGATACATTGA
1 AGAATGTATCGATACATTGA
*
419625 AGAATGTATCGATACATTCA
1 AGAATGTATCGATACATTGA
*
419645 TA-CATGTATCGATACATTGA
1 -AGAATGTATCGATACATTGA
*
419665 AAAATGTATCGATACAT
1 AGAATGTATCGATACAT
419682 CTAGGTACTT
Statistics
Matches: 51, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
19 1 0.02
20 49 0.96
21 1 0.02
ACGTcount: A:0.40, C:0.13, G:0.16, T:0.31
Consensus pattern (20 bp):
AGAATGTATCGATACATTGA
Found at i:426338 original size:22 final size:23
Alignment explanation
Indices: 426291--426339 Score: 57
Period size: 21 Copynumber: 2.2 Consensus size: 23
426281 CACAAACTTT
* *
426291 TTTTTTAAAACAAATAAAGATCA
1 TTTTTTAAAACAAATAAACATAA
426314 TTTTTTAAAA-AAA-AAACATAA
1 TTTTTTAAAACAAATAAACATAA
*
426335 ATTTT
1 TTTTT
426340 GAACTTTTTA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
21 10 0.43
22 3 0.13
23 10 0.43
ACGTcount: A:0.53, C:0.06, G:0.02, T:0.39
Consensus pattern (23 bp):
TTTTTTAAAACAAATAAACATAA
Found at i:427538 original size:14 final size:14
Alignment explanation
Indices: 427519--427566 Score: 71
Period size: 14 Copynumber: 3.5 Consensus size: 14
427509 ACTTTCACTA
427519 TTTTTTTTTGTTC-
1 TTTTTTTTTGTTCT
*
427532 TTTTTTTTTGTTTT
1 TTTTTTTTTGTTCT
427546 TTTTTTTTTGTTCT
1 TTTTTTTTTGTTCT
*
427560 CTTTTTT
1 TTTTTTT
427567 ATTTTATTTG
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
13 12 0.39
14 19 0.61
ACGTcount: A:0.00, C:0.06, G:0.06, T:0.88
Consensus pattern (14 bp):
TTTTTTTTTGTTCT
Found at i:431893 original size:25 final size:25
Alignment explanation
Indices: 431865--431913 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
431855 TTGATATCAA
431865 ATATTAATTCATTTAAATT-ATATTG
1 ATATTAA-TCATTTAAATTCATATTG
* *
431890 ATATTCATCATTTATATTCATATT
1 ATATTAATCATTTAAATTCATATT
431914 AAGAAACAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 10 0.48
25 11 0.52
ACGTcount: A:0.37, C:0.08, G:0.02, T:0.53
Consensus pattern (25 bp):
ATATTAATCATTTAAATTCATATTG
Found at i:433177 original size:12 final size:12
Alignment explanation
Indices: 433155--433187 Score: 59
Period size: 12 Copynumber: 2.8 Consensus size: 12
433145 ATAGTAAAAT
433155 TAATA-TTTATG
1 TAATATTTTATG
433166 TAATATTTTATG
1 TAATATTTTATG
433178 TAATATTTTA
1 TAATATTTTA
433188 ATATGAGTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 5 0.24
12 16 0.76
ACGTcount: A:0.36, C:0.00, G:0.06, T:0.58
Consensus pattern (12 bp):
TAATATTTTATG
Found at i:433808 original size:25 final size:23
Alignment explanation
Indices: 433764--433861 Score: 83
Period size: 25 Copynumber: 4.1 Consensus size: 23
433754 ACTTAATACA
*
433764 TATTGTATTCATATTTAATAATT
1 TATTATATTCATATTTAATAATT
* *
433787 TATTATATTTATCTTTAA-AATACT
1 TATTATATTCATATTTAATAAT--T
*
433811 ATATTGTATTCATATTTAATAATTT
1 -TATTATATTCATATTTAATAA-TT
*
433836 TATTATATTACATCATTTCAT-ATT
1 TATTATATT-CAT-ATTTAATAATT
433860 TA
1 TA
433862 ATACTTTATT
Statistics
Matches: 60, Mismatches: 8, Indels: 13
0.74 0.10 0.16
Matches are distributed among these distances:
22 3 0.05
23 15 0.25
24 13 0.22
25 20 0.33
26 8 0.13
27 1 0.02
ACGTcount: A:0.36, C:0.07, G:0.02, T:0.55
Consensus pattern (23 bp):
TATTATATTCATATTTAATAATT
Found at i:435212 original size:2 final size:2
Alignment explanation
Indices: 435205--435230 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
435195 AAGGATTTAC
435205 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
435231 TATCTCATTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:435886 original size:18 final size:19
Alignment explanation
Indices: 435852--435916 Score: 64
Period size: 19 Copynumber: 3.4 Consensus size: 19
435842 AAAATTTTTT
435852 TAAATATATAA-TTTTAAAA
1 TAAA-ATATAATTTTTAAAA
435871 TAAAATA-AATTTTTAAAAA
1 TAAAATATAATTTTT-AAAA
**
435890 TTAAAA-ATAATTAATAAAA
1 -TAAAATATAATTTTTAAAA
435909 TAAAATAT
1 TAAAATAT
435917 TTTATTTTTT
Statistics
Matches: 39, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
17 2 0.05
18 12 0.31
19 15 0.38
20 10 0.26
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (19 bp):
TAAAATATAATTTTTAAAA
Found at i:436616 original size:16 final size:16
Alignment explanation
Indices: 436595--436666 Score: 63
Period size: 16 Copynumber: 4.1 Consensus size: 16
436585 TTCTATAAAC
436595 ATTTTATTTTATTATA
1 ATTTTATTTTATTATA
436611 ATTTTATTTTATTATCATAAA
1 ATTTTATTTTA-T-T-AT--A
* *
436632 ATAATAATTTTATTATA
1 AT-TTTATTTTATTATA
*
436649 ATTTTATTTTATTTTA
1 ATTTTATTTTATTATA
436665 AT
1 AT
436667 AAATTAAATA
Statistics
Matches: 45, Mismatches: 5, Indels: 12
0.73 0.08 0.19
Matches are distributed among these distances:
16 24 0.53
17 4 0.09
18 1 0.02
19 4 0.09
20 1 0.02
21 4 0.09
22 7 0.16
ACGTcount: A:0.36, C:0.01, G:0.00, T:0.62
Consensus pattern (16 bp):
ATTTTATTTTATTATA
Found at i:437816 original size:58 final size:57
Alignment explanation
Indices: 437700--437854 Score: 146
Period size: 58 Copynumber: 2.7 Consensus size: 57
437690 GAATTTGATT
437700 ATTTATA-AATAAAATTAAAAATAATTAAAATATTAATATTATATAAAAATATAAAA
1 ATTTATATAATAAAATTAAAAATAATTAAAATATTAATATTATATAAAAATATAAAA
** * *
437756 ATTTATATAATAAAATTATTAATATATTAAAATTTTATTATCATT-TATAAAAAT-T-TAA
1 ATTTATATAATAAAATTAAAAATA-ATTAAAATATTA--AT-ATTATATAAAAATATAAAA
*
437814 ATTTATATTATTAATAA--AAAAATAAATT-AAATA-TAATATTA
1 ATTTATA-TAATAA-AATTAAAAAT-AATTAAAATATTAATATTA
437855 ATTTAATTAA
Statistics
Matches: 82, Mismatches: 8, Indels: 20
0.75 0.07 0.18
Matches are distributed among these distances:
53 3 0.04
54 2 0.02
56 9 0.11
57 18 0.22
58 27 0.33
59 7 0.09
60 13 0.16
61 3 0.04
ACGTcount: A:0.57, C:0.01, G:0.00, T:0.42
Consensus pattern (57 bp):
ATTTATATAATAAAATTAAAAATAATTAAAATATTAATATTATATAAAAATATAAAA
Found at i:437897 original size:25 final size:25
Alignment explanation
Indices: 437801--437897 Score: 80
Period size: 25 Copynumber: 4.0 Consensus size: 25
437791 TATTATCATT
*
437801 TATAAAAATTTAAATTTATATTATTAA
1 TATAAAAATTTAAA-TTAAATTA-TAA
*
437828 TA-AAAAA-ATAAATTAAA-TATAA
1 TATAAAAATTTAAATTAAATTATAA
* **
437850 TAT--TAATTT-AATTAATAAAATAA
1 TATAAAAATTTAAATTAA-ATTATAA
437873 TATAAAAATTTAAATTAAATTATAA
1 TATAAAAATTTAAATTAAATTATAA
437898 AAATTTTATA
Statistics
Matches: 55, Mismatches: 8, Indels: 16
0.70 0.10 0.20
Matches are distributed among these distances:
21 8 0.15
22 7 0.13
23 9 0.16
24 4 0.07
25 14 0.25
26 11 0.20
27 2 0.04
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (25 bp):
TATAAAAATTTAAATTAAATTATAA
Found at i:438416 original size:34 final size:36
Alignment explanation
Indices: 438378--438476 Score: 105
Period size: 34 Copynumber: 2.8 Consensus size: 36
438368 AATTTAAATT
438378 TTATAATAT-TTTATTTTATTAAATTAAAT-TATTA
1 TTATAATATATTTATTTTATTAAATTAAATCTATTA
* * *
438412 TTATAAT-TATTTATTTAATTTTAATTTTAATCTATTA
1 TTATAATATATTTATTT--TATTAAATTAAATCTATTA
* *
438449 TTATAAAATAATTATTTTATTATAATTA
1 TTATAATATATTTATTTTATTA-AATTA
438477 TATTTCATTT
Statistics
Matches: 51, Mismatches: 8, Indels: 9
0.75 0.12 0.13
Matches are distributed among these distances:
33 1 0.02
34 14 0.27
36 14 0.27
37 14 0.27
38 8 0.16
ACGTcount: A:0.40, C:0.01, G:0.00, T:0.59
Consensus pattern (36 bp):
TTATAATATATTTATTTTATTAAATTAAATCTATTA
Found at i:438490 original size:16 final size:14
Alignment explanation
Indices: 438388--438477 Score: 55
Period size: 16 Copynumber: 6.3 Consensus size: 14
438378 TTATAATATT
438388 TTATTTTATTA-AA
1 TTATTTTATTATAA
438401 TTAAATTATTATTATAA
1 TT--ATT-TTATTATAA
438418 TTA-TTTATT-TAA
1 TTATTTTATTATAA
* *
438430 -T-TTTAATTTTAA
1 TTATTTTATTATAA
*
438442 TCTATTATTATAAAATAA
1 T-TATT-TTAT--TATAA
438460 TTATTTTATTATAA
1 TTATTTTATTATAA
438474 TTAT
1 TTAT
438478 ATTTCATTTT
Statistics
Matches: 60, Mismatches: 5, Indels: 23
0.68 0.06 0.26
Matches are distributed among these distances:
11 6 0.10
12 6 0.10
13 7 0.12
14 10 0.17
15 6 0.10
16 13 0.22
17 8 0.13
18 4 0.07
ACGTcount: A:0.40, C:0.01, G:0.00, T:0.59
Consensus pattern (14 bp):
TTATTTTATTATAA
Found at i:440479 original size:10 final size:10
Alignment explanation
Indices: 440464--440502 Score: 53
Period size: 10 Copynumber: 3.9 Consensus size: 10
440454 GTTGAAGGAT
440464 AGAGAAAGAA
1 AGAGAAAGAA
440474 AGAGAAAGAA
1 AGAGAAAGAA
*
440484 ATGAAAAAGAA
1 A-GAGAAAGAA
440495 A-AGAAAGA
1 AGAGAAAGA
440503 GAAAGGGAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
9 6 0.23
10 11 0.42
11 9 0.35
ACGTcount: A:0.72, C:0.00, G:0.26, T:0.03
Consensus pattern (10 bp):
AGAGAAAGAA
Found at i:440524 original size:18 final size:18
Alignment explanation
Indices: 440497--440554 Score: 80
Period size: 18 Copynumber: 3.2 Consensus size: 18
440487 AAAAAGAAAA
* *
440497 GAAAGAGAAAGGGAAAGG
1 GAAAGGGAAAGGTAAAGG
440515 GAAAGGGAAAGGTAAAGG
1 GAAAGGGAAAGGTAAAGG
* *
440533 TAAAGGTAAAGGTAAAGG
1 GAAAGGGAAAGGTAAAGG
440551 GAAA
1 GAAA
440555 AAAATTTTAA
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 35 1.00
ACGTcount: A:0.53, C:0.00, G:0.40, T:0.07
Consensus pattern (18 bp):
GAAAGGGAAAGGTAAAGG
Found at i:440526 original size:6 final size:6
Alignment explanation
Indices: 440497--440554 Score: 71
Period size: 6 Copynumber: 9.7 Consensus size: 6
440487 AAAAAGAAAA
* * * *
440497 GAAAGA GAAAGG GAAAGG GAAAGG GAAAGG TAAAGG TAAAGG TAAAGG
1 GAAAGG GAAAGG GAAAGG GAAAGG GAAAGG GAAAGG GAAAGG GAAAGG
*
440545 TAAAGG GAAA
1 GAAAGG GAAA
440555 AAAATTTTAA
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 49 1.00
ACGTcount: A:0.53, C:0.00, G:0.40, T:0.07
Consensus pattern (6 bp):
GAAAGG
Found at i:442003 original size:32 final size:31
Alignment explanation
Indices: 441962--442037 Score: 116
Period size: 32 Copynumber: 2.4 Consensus size: 31
441952 ATTCGAATCG
441962 TTTTAAATTTGAATAATTTCGAGTTTAAATTA
1 TTTTAAATTT-AATAATTTCGAGTTTAAATTA
* *
441994 TTTTAAATTTATATAATCTCGAGTTTATATTA
1 TTTTAAATTTA-ATAATTTCGAGTTTAAATTA
442026 TTTTAAATTTAA
1 TTTTAAATTTAA
442038 ATTATTTTAA
Statistics
Matches: 41, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
31 2 0.05
32 39 0.95
ACGTcount: A:0.37, C:0.04, G:0.07, T:0.53
Consensus pattern (31 bp):
TTTTAAATTTAATAATTTCGAGTTTAAATTA
Found at i:442004 original size:16 final size:16
Alignment explanation
Indices: 441962--442048 Score: 66
Period size: 16 Copynumber: 5.4 Consensus size: 16
441952 ATTCGAATCG
* *
441962 TTTTAAATTTGAATAA
1 TTTTAAATTTAAATTA
** *
441978 TTTCGAGTTTAAATTA
1 TTTTAAATTTAAATTA
* *
441994 TTTTAAATTTATATAA
1 TTTTAAATTTAAATTA
* ** * *
442010 TCTCGAGTTTATATTA
1 TTTTAAATTTAAATTA
442026 TTTTAAATTTAAATTA
1 TTTTAAATTTAAATTA
442042 TTTTAAA
1 TTTTAAA
442049 CTATAATTTT
Statistics
Matches: 51, Mismatches: 20, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
16 51 1.00
ACGTcount: A:0.38, C:0.03, G:0.06, T:0.53
Consensus pattern (16 bp):
TTTTAAATTTAAATTA
Found at i:443094 original size:16 final size:16
Alignment explanation
Indices: 443081--443117 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 16
443071 TTTAAAATCT
443081 TTTTAAATTTAAATTA
1 TTTTAAATTTAAATTA
*
443097 TTTTAAGTTTAAAGTTA
1 TTTTAAATTTAAA-TTA
443114 TTTT
1 TTTT
443118 CGGTCTAAGT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 12 0.63
17 7 0.37
ACGTcount: A:0.35, C:0.00, G:0.05, T:0.59
Consensus pattern (16 bp):
TTTTAAATTTAAATTA
Found at i:443684 original size:14 final size:14
Alignment explanation
Indices: 443633--443684 Score: 50
Period size: 14 Copynumber: 3.4 Consensus size: 14
443623 TGATATATAT
*
443633 ATATATAAATTTTG
1 ATATATAAATTTTA
443647 ATATATTAATAATTTATA
1 ATATA-T-A-AATTT-TA
*
443665 TTATATAAATTTTA
1 ATATATAAATTTTA
443679 ATATAT
1 ATATAT
443685 TGATGCATTC
Statistics
Matches: 31, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
14 12 0.39
15 6 0.19
16 2 0.06
17 6 0.19
18 5 0.16
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (14 bp):
ATATATAAATTTTA
Found at i:449196 original size:16 final size:19
Alignment explanation
Indices: 449174--449215 Score: 63
Period size: 16 Copynumber: 2.4 Consensus size: 19
449164 TCATTTATTT
449174 TTATTTTTT-ATT-CAAAA
1 TTATTTTTTAATTACAAAA
449191 -TATTTTTTAATTACAAAA
1 TTATTTTTTAATTACAAAA
449209 TTATTTT
1 TTATTTT
449216 ATTTACAATC
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
16 8 0.36
17 3 0.14
18 5 0.23
19 6 0.27
ACGTcount: A:0.36, C:0.05, G:0.00, T:0.60
Consensus pattern (19 bp):
TTATTTTTTAATTACAAAA
Found at i:449197 original size:17 final size:19
Alignment explanation
Indices: 449177--449220 Score: 56
Period size: 17 Copynumber: 2.4 Consensus size: 19
449167 TTTATTTTTA
449177 TTTTTTATT-CAAAA-TAT
1 TTTTTTATTACAAAATTAT
*
449194 TTTTTAATTACAAAATTAT
1 TTTTTTATTACAAAATTAT
449213 TTTATTTA
1 TTT-TTTA
449221 CAATCAAATT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
17 8 0.36
18 5 0.23
19 6 0.27
20 3 0.14
ACGTcount: A:0.36, C:0.05, G:0.00, T:0.59
Consensus pattern (19 bp):
TTTTTTATTACAAAATTAT
Found at i:450424 original size:80 final size:81
Alignment explanation
Indices: 450340--450511 Score: 305
Period size: 81 Copynumber: 2.2 Consensus size: 81
450330 TTTTATTAAC
450340 TTTAAAATATAAATGAATTTATTTGATAAAAAT-AAAAAAGTTAAAATTTGACTTTTAATTTTCA
1 TTTAAAATATAAATGAATTTATTTGATAAAAATAAAAAAAGTTAAAATTTGACTTTTAATTTTCA
450404 TAAATTATAACTTATA
66 TAAATTATAACTTATA
* *
450420 TTTAAAATATAAATGAATTTATTTGATAAAAATAAAAAAAGTTAAAATTTGACTTTTTATTTTCG
1 TTTAAAATATAAATGAATTTATTTGATAAAAATAAAAAAAGTTAAAATTTGACTTTTAATTTTCA
450485 TAAATTATAACTTATA
66 TAAATTATAACTTATA
450501 -TTAAAAT-TAAA
1 TTTAAAATATAAA
450512 AATAATAAAT
Statistics
Matches: 89, Mismatches: 2, Indels: 3
0.95 0.02 0.03
Matches are distributed among these distances:
79 4 0.04
80 40 0.45
81 45 0.51
ACGTcount: A:0.49, C:0.03, G:0.05, T:0.42
Consensus pattern (81 bp):
TTTAAAATATAAATGAATTTATTTGATAAAAATAAAAAAAGTTAAAATTTGACTTTTAATTTTCA
TAAATTATAACTTATA
Found at i:450608 original size:25 final size:26
Alignment explanation
Indices: 450580--450648 Score: 63
Period size: 25 Copynumber: 2.7 Consensus size: 26
450570 ATTTTCATTA
*
450580 TTTATAAAATATATAATAA-TATATT
1 TTTATAAAATATATAATAACAATATT
* *
450605 TTTA-AAATAAATAAAATAACGAATATT
1 TTTATAAA-ATATATAATAAC-AATATT
*
450632 TATATAAAATAT-TAATA
1 TTTATAAAATATATAATA
450649 TAGTAAAAAT
Statistics
Matches: 34, Mismatches: 6, Indels: 7
0.72 0.13 0.15
Matches are distributed among these distances:
24 3 0.09
25 13 0.38
26 4 0.12
27 11 0.32
28 3 0.09
ACGTcount: A:0.57, C:0.01, G:0.01, T:0.41
Consensus pattern (26 bp):
TTTATAAAATATATAATAACAATATT
Found at i:450610 original size:23 final size:22
Alignment explanation
Indices: 450578--450622 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 22
450568 TAATTTTCAT
*
450578 TATTTATAAAATATATAATAATA
1 TATTTATAAAATAAATAA-AATA
*
450601 TATTTTTAAAATAAATAAAATA
1 TATTTATAAAATAAATAAAATA
450623 ACGAATATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 4 0.20
23 16 0.80
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (22 bp):
TATTTATAAAATAAATAAAATA
Found at i:451053 original size:1 final size:1
Alignment explanation
Indices: 451047--451074 Score: 56
Period size: 1 Copynumber: 28.0 Consensus size: 1
451037 TATAAGCTTG
451047 TTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTT
451075 CCAATTAATC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 27 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:451424 original size:21 final size:19
Alignment explanation
Indices: 451400--451447 Score: 51
Period size: 21 Copynumber: 2.4 Consensus size: 19
451390 AAGTATTTTG
* *
451400 ATTAAATTCTGAATTTAATA
1 ATTAAATT-TAAATATAATA
451420 TATTAAAATTTAAATATAATA
1 -ATT-AAATTTAAATATAATA
451441 ATTAAAT
1 ATTAAAT
451448 AATTTTTTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
19 4 0.17
20 3 0.12
21 12 0.50
22 5 0.21
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.44
Consensus pattern (19 bp):
ATTAAATTTAAATATAATA
Found at i:451578 original size:51 final size:51
Alignment explanation
Indices: 451502--451603 Score: 195
Period size: 51 Copynumber: 2.0 Consensus size: 51
451492 TAGATGGTAA
451502 GAAAAATTAAATGAATAATGGAGATTAACAAGCAAAAAGCATAAAAAATCT
1 GAAAAATTAAATGAATAATGGAGATTAACAAGCAAAAAGCATAAAAAATCT
*
451553 GAAAAATTAAATGAATAATGGAGATTAACAAGCAAAAAGCATCAAAAATCT
1 GAAAAATTAAATGAATAATGGAGATTAACAAGCAAAAAGCATAAAAAATCT
451604 AATAAAGTAA
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 50 1.00
ACGTcount: A:0.58, C:0.09, G:0.14, T:0.20
Consensus pattern (51 bp):
GAAAAATTAAATGAATAATGGAGATTAACAAGCAAAAAGCATAAAAAATCT
Found at i:451615 original size:51 final size:51
Alignment explanation
Indices: 451502--451615 Score: 185
Period size: 51 Copynumber: 2.2 Consensus size: 51
451492 TAGATGGTAA
*
451502 GAAAAATTAAATGAATAATGGAGATTAACAAGCAAAAAGCATAAAAAATCT
1 GAAAAAGTAAATGAATAATGGAGATTAACAAGCAAAAAGCATAAAAAATCT
* *
451553 GAAAAATTAAATGAATAATGGAGATTAACAAGCAAAAAGCATCAAAAATCT
1 GAAAAAGTAAATGAATAATGGAGATTAACAAGCAAAAAGCATAAAAAATCT
451604 -AATAAAGTAAAT
1 GAA-AAAGTAAAT
451616 TAATCGCCAA
Statistics
Matches: 60, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
50 2 0.03
51 58 0.97
ACGTcount: A:0.59, C:0.08, G:0.13, T:0.20
Consensus pattern (51 bp):
GAAAAAGTAAATGAATAATGGAGATTAACAAGCAAAAAGCATAAAAAATCT
Found at i:452890 original size:29 final size:29
Alignment explanation
Indices: 452831--452892 Score: 106
Period size: 30 Copynumber: 2.1 Consensus size: 29
452821 TGCAACTCAA
*
452831 TTGACATAAATTATGTTTGGTTGATATTT
1 TTGACATAAATTATATTTGGTTGATATTT
452860 TTGACATAAAATTATATTTGGTTGATATTT
1 TTGACAT-AAATTATATTTGGTTGATATTT
452890 TTG
1 TTG
452893 CTATTTGTTG
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
29 7 0.23
30 24 0.77
ACGTcount: A:0.29, C:0.03, G:0.16, T:0.52
Consensus pattern (29 bp):
TTGACATAAATTATATTTGGTTGATATTT
Found at i:453160 original size:18 final size:19
Alignment explanation
Indices: 453133--453171 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
453123 GTCTTCTAGA
453133 AAATACAATTTATAT-ATT
1 AAATACAATTTATATGATT
*
453151 AAATATAATTTATATGATT
1 AAATACAATTTATATGATT
453170 AA
1 AA
453172 CAGTGTGATG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 14 0.74
19 5 0.26
ACGTcount: A:0.51, C:0.03, G:0.03, T:0.44
Consensus pattern (19 bp):
AAATACAATTTATATGATT
Found at i:454123 original size:2 final size:2
Alignment explanation
Indices: 454111--454147 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
454101 TGGTGATACA
*
454111 AT AT GT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
454148 GTGAAGTTTG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (2 bp):
AT
Found at i:457941 original size:19 final size:21
Alignment explanation
Indices: 457895--457948 Score: 76
Period size: 19 Copynumber: 2.7 Consensus size: 21
457885 TTTCAACAAT
457895 TTGTATCGATACAAACAGTAA
1 TTGTATCGATACAAACAGTAA
* *
457916 ATGTATCGATACATA-AGT-A
1 TTGTATCGATACAAACAGTAA
457935 TTGTATCGATACAA
1 TTGTATCGATACAA
457949 TGTATTGATA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
19 13 0.45
20 3 0.10
21 13 0.45
ACGTcount: A:0.41, C:0.13, G:0.15, T:0.31
Consensus pattern (21 bp):
TTGTATCGATACAAACAGTAA
Found at i:463592 original size:33 final size:34
Alignment explanation
Indices: 463547--463616 Score: 90
Period size: 33 Copynumber: 2.1 Consensus size: 34
463537 CTATCACTAT
463547 TTGTATCAATACATG-GGACAA-TGTATCCATACA
1 TTGTATCAATACATGAGGA-AATTGTATCCATACA
* * *
463580 TTGTATCGATACATGAGGAAATTGTATCGATATA
1 TTGTATCAATACATGAGGAAATTGTATCCATACA
463614 TTG
1 TTG
463617 CTTGTAACGG
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
33 16 0.50
34 16 0.50
ACGTcount: A:0.34, C:0.13, G:0.19, T:0.34
Consensus pattern (34 bp):
TTGTATCAATACATGAGGAAATTGTATCCATACA
Found at i:469749 original size:13 final size:13
Alignment explanation
Indices: 469731--469758 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
469721 ACAACATTCC
469731 TTGTATCGATACA
1 TTGTATCGATACA
469744 TTGTATCGATACA
1 TTGTATCGATACA
469757 TT
1 TT
469759 AGGTACTATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.14, G:0.14, T:0.43
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:469900 original size:24 final size:22
Alignment explanation
Indices: 469873--469917 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
469863 TTATCAAATT
*
469873 TTCAACAAATTTTCACTTTTTCAC
1 TTCAA-AAACTTTCA-TTTTTCAC
*
469897 TTCAAATACTTTCATTTTTCA
1 TTCAAAAACTTTCATTTTTCA
469918 TCAAAATCAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 7 0.37
23 7 0.37
24 5 0.26
ACGTcount: A:0.29, C:0.22, G:0.00, T:0.49
Consensus pattern (22 bp):
TTCAAAAACTTTCATTTTTCAC
Found at i:472265 original size:20 final size:19
Alignment explanation
Indices: 472217--472273 Score: 78
Period size: 19 Copynumber: 2.9 Consensus size: 19
472207 TTGTGTCGAT
472217 ACATTGTATCGATACATGC
1 ACATTGTATCGATACATGC
* * *
472236 TCACTGTATCGATACATGG
1 ACATTGTATCGATACATGC
472255 ACAATTGTATCGATACATG
1 AC-ATTGTATCGATACATG
472274 AGATTGGCAG
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
19 17 0.53
20 15 0.47
ACGTcount: A:0.32, C:0.19, G:0.18, T:0.32
Consensus pattern (19 bp):
ACATTGTATCGATACATGC
Found at i:476468 original size:31 final size:30
Alignment explanation
Indices: 476361--476608 Score: 327
Period size: 30 Copynumber: 8.0 Consensus size: 30
476351 TCTTCAAATG
476361 TCTCTTCTCAAAGTCCACGACTCAGTGGCA
1 TCTCTTCTCAAAGTCCACGACTCAGTGGCA
*
476391 TCTCTTCTCAAAGTCCACAACTCAGTGGCA
1 TCTCTTCTCAAAGTCCACGACTCAGTGGCA
*
476421 TCTCTTTTCTCAAAGTCCACGACTGAGTGGCA
1 TCTC--TTCTCAAAGTCCACGACTCAGTGGCA
476453 TCTCTTCTTCAAAGTCCACGACTCAGTGGCAA
1 TCTCTTC-TCAAAGTCCACGACTCAGTGGC-A
476485 TCTCTTCTCAAAGTCCACGACTCAGTGGCA
1 TCTCTTCTCAAAGTCCACGACTCAGTGGCA
* *
476515 TCT-TGTCCCAAAGTCCACGACTTAGTGGCA
1 TCTCT-TCTCAAAGTCCACGACTCAGTGGCA
* *
476545 TCTTTTCTTCAAAGTCCACAACTCAGTGGCA
1 TCTCTTC-TCAAAGTCCACGACTCAGTGGCA
* * *
476576 TCTTTTTTCTTCAAAGTCCACAACTCTGTGGCA
1 TC--TCTTC-TCAAAGTCCACGACTCAGTGGCA
476609 CCCTTTTAAG
Statistics
Matches: 199, Mismatches: 10, Indels: 15
0.89 0.04 0.07
Matches are distributed among these distances:
29 1 0.01
30 68 0.34
31 66 0.33
32 36 0.18
33 28 0.14
ACGTcount: A:0.24, C:0.31, G:0.16, T:0.30
Consensus pattern (30 bp):
TCTCTTCTCAAAGTCCACGACTCAGTGGCA
Found at i:476493 original size:62 final size:60
Alignment explanation
Indices: 476361--476608 Score: 327
Period size: 62 Copynumber: 4.0 Consensus size: 60
476351 TCTTCAAATG
476361 TCTCTTCTCAAAGTCCACGACTCAGTGGCATCTCTTCTCAAAGTCCACAACTCAGTGGCA
1 TCTCTTCTCAAAGTCCACGACTCAGTGGCATCTCTTCTCAAAGTCCACAACTCAGTGGCA
* *
476421 TCTCTTTTCTCAAAGTCCACGACTGAGTGGCATCTCTTCTTCAAAGTCCACGACTCAGTGGCAA
1 TCTC--TTCTCAAAGTCCACGACTCAGTGGCATCTCTTC-TCAAAGTCCACAACTCAGTGGC-A
* * *
476485 TCTCTTCTCAAAGTCCACGACTCAGTGGCATCT-TGTCCCAAAGTCCACGACTTAGTGGCA
1 TCTCTTCTCAAAGTCCACGACTCAGTGGCATCTCT-TCTCAAAGTCCACAACTCAGTGGCA
* * * *
476545 TCTTTTCTTCAAAGTCCACAACTCAGTGGCATCTTTTTTCTTCAAAGTCCACAACTCTGTGGCA
1 TCTCTTC-TCAAAGTCCACGACTCAGTGGCATC--TCTTC-TCAAAGTCCACAACTCAGTGGCA
476609 CCCTTTTAAG
Statistics
Matches: 167, Mismatches: 11, Indels: 16
0.86 0.06 0.08
Matches are distributed among these distances:
60 11 0.07
61 45 0.27
62 62 0.37
63 24 0.14
64 25 0.15
ACGTcount: A:0.24, C:0.31, G:0.16, T:0.30
Consensus pattern (60 bp):
TCTCTTCTCAAAGTCCACGACTCAGTGGCATCTCTTCTCAAAGTCCACAACTCAGTGGCA
Found at i:476589 original size:33 final size:33
Alignment explanation
Indices: 476370--477901 Score: 661
Period size: 34 Copynumber: 47.8 Consensus size: 33
476360 GTCTCTTCTC
* * * *
476370 AAAGTCCACGACTCAGTGGCATC--TCTTC-TC
1 AAAGTCCACAACTCCGTGGCATCTTTTTTCTTT
* * *
476400 AAAGTCCACAACTCAGTGGCATCTCTTTTC-TC
1 AAAGTCCACAACTCCGTGGCATCTTTTTTCTTT
* ** * *
476432 AAAGTCCACGACTGAGTGGCATC--TCTTCTTC
1 AAAGTCCACAACTCCGTGGCATCTTTTTTCTTT
* * * *
476463 AAAGTCCACGACTCAGTGGCAATC--TCTTC-TC
1 AAAGTCCACAACTCCGTGGC-ATCTTTTTTCTTT
* * * **
476494 AAAGTCCACGACTCAGTGGCATC--TTGTC-CC
1 AAAGTCCACAACTCCGTGGCATCTTTTTTCTTT
* ** *
476524 AAAGTCCACGACTTAGTGGCATC--TTTTCTTC
1 AAAGTCCACAACTCCGTGGCATCTTTTTTCTTT
* *
476555 AAAGTCCACAACTCAGTGGCATCTTTTTTCTTC
1 AAAGTCCACAACTCCGTGGCATCTTTTTTCTTT
* *
476588 AAAGTCCACAACTCTGTGGCA-C-----CCTTT
1 AAAGTCCACAACTCCGTGGCATCTTTTTTCTTT
* *
476615 TAAGTCCACAACTCCGTGGCA-CCTTTTTCTTTAT
1 AAAGTCCACAACTCCGTGGCATCTTTTTTC-TT-T
* * *
476649 AAAGCCCATAACTCCGTGGCACTCTTTTTCCTTT
1 AAAGTCCACAACTCCGTGGCA-TCTTTTTTCTTT
* * * *
476683 TAAGTCTACAACTCTGTGGCA-C-----CCTTT
1 AAAGTCCACAACTCCGTGGCATCTTTTTTCTTT
* * *
476710 TAAGTCCACAACTCCGTGGCACCTTTTTCTTTTT
1 AAAGTCCACAACTCCGTGGCATCTTTTT-TCTTT
* * *
476744 AAAGCCCACAACTCTGTGGCATCTTTTTCCTTT
1 AAAGTCCACAACTCCGTGGCATCTTTTTTCTTT
* * * * *
476777 TAAGTCCACAACTCCATGGCACCTTGTTCCTTT
1 AAAGTCCACAACTCCGTGGCATCTTTTTTCTTT
* * * *
476810 TAAGTCCAAAACTCCATGGCACCTTTTTTCTTTTT
1 AAAGTCCACAACTCCGTGGCATCTTTTTTC--TTT
* * * *
476845 AAAGCCCATAACTCTGTGGCACTCTTTTTCCTTT
1 AAAGTCCACAACTCCGTGGCA-TCTTTTTTCTTT
* * * * ** *
476879 TAACTCTACAATTTAGTGGCA-C-----CCTTT
1 AAAGTCCACAACTCCGTGGCATCTTTTTTCTTT
* * *
476906 TAAGTCCACAACTCCGTGGCGTCTTTTTCCTTT
1 AAAGTCCACAACTCCGTGGCATCTTTTTTCTTT
* ** *
476939 TAAGTCCACAACTTTGTGGCA-C---CTT-TTT
1 AAAGTCCACAACTCCGTGGCATCTTTTTTCTTT
* * * *
476967 AAA-TCCACAAATCTGTGGCACCTTTTTCTTTTT
1 AAAGTCCACAACTCCGTGGCATCTTTTT-TCTTT
* *
477000 AAAGCCCACAACTCCGTGGCACTCTTTTTCCTTT
1 AAAGTCCACAACTCCGTGGCA-TCTTTTTTCTTT
* * **
477034 TAAGTCCACAACTCTGTGGCA-C---CAT-TTT
1 AAAGTCCACAACTCCGTGGCATCTTTTTTCTTT
* *
477062 -AAGTCCACAACTCCGTGGCACCTTTTTCTTTTT
1 AAAGTCCACAACTCCGTGGCATCTTTTT-TCTTT
*
477095 AAAG-CCTACAACTCCGTGGCATCTTTTTCCTTT
1 AAAGTCC-ACAACTCCGTGGCATCTTTTTTCTTT
* * * * *
477128 TAAGTCCACAACTCCATGGCACCTTGTTCCTTT
1 AAAGTCCACAACTCCGTGGCATCTTTTTTCTTT
* *
477161 TAAGTCCACAACTCCGTGGCA-CATTTTT-TTT
1 AAAGTCCACAACTCCGTGGCATCTTTTTTCTTT
* *
477192 AAAGCCCACAACTCCATGGCACTCTTTCTATT-TTT
1 AAAGTCCACAACTCCGTGGCA-TCTTT-T-TTCTTT
* * * *
477227 -AAGTCCACAATTTCGTGACA-C-----CCTTT
1 AAAGTCCACAACTCCGTGGCATCTTTTTTCTTT
* * * *
477253 TAAGTCCACAACTCTGTGGTATCTTTTTCCTTT
1 AAAGTCCACAACTCCGTGGCATCTTTTTTCTTT
* * * * * *
477286 TAAGTCCATAACTCCGTGACACCTTGTTCCTTT
1 AAAGTCCACAACTCCGTGGCATCTTTTTTCTTT
* * * *
477319 TAAGTCCACAACTCCATGGCACCTTTTTCTTTTT
1 AAAGTCCACAACTCCGTGGCATCTTTTT-TCTTT
* * *
477353 AAAGCCCATAACTCCGTGACA-CTTTTTTTCCTTT
1 AAAGTCCACAACTCCGTGGCATC-TTTTTT-CTTT
* * * * *
477387 TAAGTCCATAATTCTGTGGCA-C-----CCTTT
1 AAAGTCCACAACTCCGTGGCATCTTTTTTCTTT
* * *
477414 TAAGTCTACAACTCCGTGGCATCTTTTTTTTTTT
1 AAAGTCCACAACTCCGTGGCATC-TTTTTTCTTT
* *
477448 AAAGCCCAAAACTCCGTGGCATCTTTTTTCTTT
1 AAAGTCCACAACTCCGTGGCATCTTTTTTCTTT
* * * *
477481 TAAGTCCACAACTCCAG-GGCACCTTGTTCCTTT
1 AAAGTCCACAACTCC-GTGGCATCTTTTTTCTTT
*
477514 TAAGTCCACAACTCCGTGGCA-CTTTTTTCTTTTT
1 AAAGTCCACAACTCCGTGGCATCTTTTTTC--TTT
* * * * * *
477548 AAAGCCCATAACTTCTTGGTACTCTTTTTCCTTTT
1 AAAGTCCACAACTCCGTGGCA-TCTTTTTTC-TTT
* * *
477583 AAA-TCCATAACTCTGTGGCA-C---CTT-TTT
1 AAAGTCCACAACTCCGTGGCATCTTTTTTCTTT
* *
477610 -AAGTCCACAACTCCGTGGCACCTTTTTCTTTTT
1 AAAGTCCACAACTCCGTGGCATCTTTTT-TCTTT
* *
477643 TAAGCCCACAACTCCGTGGCA-CTCTTTTTCTTTT
1 AAAGTCCACAACTCCGTGGCATCT-TTTTTC-TTT
* * *
477677 CAAAGTCCACAACTCTGTGACA-C---CTT-TTT
1 -AAAGTCCACAACTCCGTGGCATCTTTTTTCTTT
* * *
477706 -AAGTCCACAATTCCGTGGCACCTTTTTCTTTTT
1 AAAGTCCACAACTCCGTGGCATCTTTTT-TCTTT
477739 AAAG-CTCACAACTCCGTGGCACTCTTTTTTCTTT
1 AAAGTC-CACAACTCCGTGGCA-TCTTTTTTCTTT
* * * * *
477773 TAAGTCCATAACTCCGTGGCACCCTTTTCCTTTT
1 AAAGTCCACAACTCCGTGGCATCTTTTTTC-TTT
* * * * * **
477807 TAAGCCCATACCTCCATGGCATCCCTTTTCCCTTT
1 AAAGTCCACAACTCCGTGGCAT--CTTTTTTCTTT
* * * * *
477842 TAAGCCCACACCTTCGTGGCATCCCTTTTTTCTAT
1 AAAGTCCACAACTCCGTGGCAT--CTTTTTTCTTT
* * *
477877 -AAGTCCACAATTCTGTGGCACCTTT
1 AAAGTCCACAACTCCGTGGCATCTTT
477902 AAGTCCAATA
Statistics
Matches: 1184, Mismatches: 217, Indels: 200
0.74 0.14 0.12
Matches are distributed among these distances:
26 5 0.00
27 172 0.15
28 16 0.01
29 5 0.00
30 59 0.05
31 91 0.08
32 62 0.05
33 300 0.25
34 352 0.30
35 96 0.08
36 26 0.02
ACGTcount: A:0.21, C:0.30, G:0.12, T:0.36
Consensus pattern (33 bp):
AAAGTCCACAACTCCGTGGCATCTTTTTTCTTT
Found at i:476667 original size:34 final size:32
Alignment explanation
Indices: 476525--477901 Score: 977
Period size: 34 Copynumber: 42.8 Consensus size: 32
476515 TCTTGTCCCA
* ** * **
476525 AAGTCCACGACTTAGTGGCATC-TTTTCTTCA
1 AAGTCCACAACTCCGTGGCACCTTTTTCTTTT
* * **
476556 AAGTCCACAACTCAGTGGCATCTTTTTTCTTCA
1 AAGTCCACAACTCCGTGGCA-CCTTTTTCTTTT
*
476589 AAGTCCACAACTCTGTGGCACC-----CTTTT
1 AAGTCCACAACTCCGTGGCACCTTTTTCTTTT
476616 AAGTCCACAACTCCGTGGCACCTTTTTCTTTAT
1 AAGTCCACAACTCCGTGGCACCTTTTTCTTT-T
* *
476649 AAAGCCCATAACTCCGTGGCACTCTTTTTCCTTTT
1 -AAGTCCACAACTCCGTGGCAC-CTTTTT-CTTTT
* *
476684 AAGTCTACAACTCTGTGGCACC-----CTTTT
1 AAGTCCACAACTCCGTGGCACCTTTTTCTTTT
476711 AAGTCCACAACTCCGTGGCACCTTTTTCTTTTT
1 AAGTCCACAACTCCGTGGCACCTTTTTC-TTTT
* * *
476744 AAAGCCCACAACTCTGTGGCATCTTTTTCCTTTT
1 -AAGTCCACAACTCCGTGGCACCTTTTT-CTTTT
* *
476778 AAGTCCACAACTCCATGGCACCTTGTTCCTTTT
1 AAGTCCACAACTCCGTGGCACCTT-TTTCTTTT
* *
476811 AAGTCCAAAACTCCATGGCACCTTTTTTCTTTTT
1 AAGTCCACAACTCCGTGGCACC-TTTTTC-TTTT
* * *
476845 AAAGCCCATAACTCTGTGGCACTCTTTTTCCTTTT
1 -AAGTCCACAACTCCGTGGCAC-CTTTTT-CTTTT
* * * **
476880 AACTCTACAATTTAGTGGCACC-----CTTTT
1 AAGTCCACAACTCCGTGGCACCTTTTTCTTTT
**
476907 AAGTCCACAACTCCGTGGCGTCTTTTTCCTTTT
1 AAGTCCACAACTCCGTGGCACCTTTTT-CTTTT
**
476940 AAGTCCACAACTTTGTGGCACC----T-TTTT
1 AAGTCCACAACTCCGTGGCACCTTTTTCTTTT
* * *
476967 AAATCCACAAATCTGTGGCACCTTTTTCTTTTT
1 AAGTCCACAACTCCGTGGCACCTTTTTC-TTTT
*
477000 AAAGCCCACAACTCCGTGGCACTCTTTTTCCTTTT
1 -AAGTCCACAACTCCGTGGCAC-CTTTTT-CTTTT
* *
477035 AAGTCCACAACTCTGTGGCACC-----ATTTT
1 AAGTCCACAACTCCGTGGCACCTTTTTCTTTT
477062 AAGTCCACAACTCCGTGGCACCTTTTTCTTTTT
1 AAGTCCACAACTCCGTGGCACCTTTTTC-TTTT
*
477095 AAAG-CCTACAACTCCGTGGCATCTTTTTCCTTTT
1 -AAGTCC-ACAACTCCGTGGCACCTTTTT-CTTTT
* *
477129 AAGTCCACAACTCCATGGCACCTTGTTCCTTTT
1 AAGTCCACAACTCCGTGGCACCTT-TTTCTTTT
* *
477162 AAGTCCACAACTCCGTGGCACATTTTT-TTTA
1 AAGTCCACAACTCCGTGGCACCTTTTTCTTTT
* *
477193 AAGCCCACAACTCCATGGCACTCTTTCTAT-TTTT
1 AAGTCCACAACTCCGTGGCAC-CTTT-T-TCTTTT
* * *
477227 AAGTCCACAATTTCGTGACACC-----CTTTT
1 AAGTCCACAACTCCGTGGCACCTTTTTCTTTT
* * *
477254 AAGTCCACAACTCTGTGGTATCTTTTTCCTTTT
1 AAGTCCACAACTCCGTGGCACCTTTTT-CTTTT
* * *
477287 AAGTCCATAACTCCGTGACACCTTGTTCCTTTT
1 AAGTCCACAACTCCGTGGCACCTT-TTTCTTTT
*
477320 AAGTCCACAACTCCATGGCACCTTTTTCTTTTT
1 AAGTCCACAACTCCGTGGCACCTTTTTC-TTTT
* * * *
477353 AAAGCCCATAACTCCGTGACACTTTTTTTCCTTTT
1 -AAGTCCACAACTCCGTGGCAC-CTTTTT-CTTTT
* * *
477388 AAGTCCATAATTCTGTGGCACC-----CTTTT
1 AAGTCCACAACTCCGTGGCACCTTTTTCTTTT
* * *
477415 AAGTCTACAACTCCGTGGCATCTTTTTTTTTTT
1 AAGTCCACAACTCCGTGGCA-CCTTTTTCTTTT
* * *
477448 AAAGCCCAAAACTCCGTGGCATCTTTTTTCTTTT
1 -AAGTCCACAACTCCGTGGCA-CCTTTTTCTTTT
*
477482 AAGTCCACAACTCCAG-GGCACCTTGTTCCTTTT
1 AAGTCCACAACTCC-GTGGCACCTT-TTTCTTTT
*
477515 AAGTCCACAACTCCGTGGCACTTTTTTCTTTTT
1 AAGTCCACAACTCCGTGGCACCTTTTTC-TTTT
* * * * *
477548 AAAGCCCATAACTTCTTGGTACTCTTTTTCCTTTT
1 -AAGTCCACAACTCCGTGGCAC-CTTTTT-CTTTT
* * *
477583 AAATCCATAACTCTGTGGCACC----T-TTTT
1 AAGTCCACAACTCCGTGGCACCTTTTTCTTTT
477610 AAGTCCACAACTCCGTGGCACCTTTTTCTTTTTT
1 AAGTCCACAACTCCGTGGCACCTTTTTC--TTTT
*
477644 AAGCCCACAACTCCGTGGCACTCTTTTTCTTTT
1 AAGTCCACAACTCCGTGGCAC-CTTTTTCTTTT
* *
477677 CAAAGTCCACAACTCTGTGACACC----T-TTTT
1 --AAGTCCACAACTCCGTGGCACCTTTTTCTTTT
*
477706 AAGTCCACAATTCCGTGGCACCTTTTTCTTTTT
1 AAGTCCACAACTCCGTGGCACCTTTTTC-TTTT
477739 AAAG-CTCACAACTCCGTGGCACTCTTTTTTCTTTT
1 -AAGTC-CACAACTCCGTGGCAC-C-TTTTTCTTTT
* *
477774 AAGTCCATAACTCCGTGGCACCCTTTTCCTTTTT
1 AAGTCCACAACTCCGTGGCA-CCTTTTTC-TTTT
* * * * *
477808 AAGCCCATACCTCCATGGCATCCCTTTTCCCTTTT
1 AAGTCCACAACTCCGTGGCA--CCTTTT-TCTTTT
* * * *
477843 AAGCCCACACCTTCGTGGCATCCCTTTTT-TCTAT
1 AAGTCCACAACTCCGTGGCA--CCTTTTTCT-TTT
* *
477877 AAGTCCACAATTCTGTGGCACCTTT
1 AAGTCCACAACTCCGTGGCACCTTT
477902 AAGTCCAATA
Statistics
Matches: 1082, Mismatches: 158, Indels: 211
0.75 0.11 0.15
Matches are distributed among these distances:
27 200 0.18
28 1 0.00
29 6 0.01
30 1 0.00
31 43 0.04
32 26 0.02
33 288 0.27
34 369 0.34
35 131 0.12
36 17 0.02
ACGTcount: A:0.21, C:0.29, G:0.12, T:0.38
Consensus pattern (32 bp):
AAGTCCACAACTCCGTGGCACCTTTTTCTTTT
Found at i:476700 original size:95 final size:94
Alignment explanation
Indices: 476555--477354 Score: 563
Period size: 95 Copynumber: 8.4 Consensus size: 94
476545 TCTTTTCTTC
* * * **
476555 AAAGTCCACAACTCAGTGGCATCTTTTTTCTTCAAAGTCCACAACTCTGTGGCACCCTTTTAAGT
1 AAAGCCCACAACTCTGTGGCATCTTTTTCCTTTTAAGTCCACAACTCTGTGGCACCCTTTTAAGT
*
476620 CCACAACTCCGTGGCACCTTTTTCTTTAT
66 CCACAACTCCGTGGCACCTTTTTCTTTTT
* * *
476649 AAAGCCCATAACTCCGTGGCACTCTTTTTCCTTTTAAGTCTACAACTCTGTGGCACCCTTTTAAG
1 AAAGCCCACAACTCTGTGGCA-TCTTTTTCCTTTTAAGTCCACAACTCTGTGGCACCCTTTTAAG
476714 TCCACAACTCCGTGGCACCTTTTTCTTTTT
65 TCCACAACTCCGTGGCACCTTTTTCTTTTT
**
476744 AAAGCCCACAACTCTGTGGCATCTTTTTCCTTTTAAGTCCACAACTCCATGGCACCTTGTTCCTT
1 AAAGCCCACAACTCTGTGGCATCTTTTTCCTTTTAAGTCCACAACTCTGTGGCA-C-----CCTT
* *
476809 TTAAGTCCAAAACTCCATGGCACCTTTTTTCTTTTT
60 TTAAGTCCACAACTCCGTGGCACC-TTTTTCTTTTT
* * * *
476845 AAAGCCCATAACTCTGTGGCACTCTTTTTCCTTTTAACTCTACAA-TTTAGTGGCACCCTTTTAA
1 AAAGCCCACAACTCTGTGGCA-TCTTTTTCCTTTTAAGTCCACAACTCT-GTGGCACCCTTTTAA
** *
476909 GTCCACAACTCCGTGGCGTCTTTTTCCTTTT
64 GTCCACAACTCCGTGGCACCTTTTTCTTTTT
* * * * *
476940 -AAGTCCACAACTTTGTGGCA-C-----CTTTTTAAATCCACAAATCTGTGGCACCTTTTTCTTT
1 AAAGCCCACAACTCTGTGGCATCTTTTTCCTTTTAAGTCCACAACTCTGTGGCACC-----C-TT
* *
476998 TTAAAGCCCACAACTCCGTGGCACTCTTTTTCCTTTT
60 TT-AAGTCCACAACTCCGTGGCAC-CTTTTTCTTTTT
* * *
477035 -AAGTCCACAACTCTGTGGCA-C-----CATTTTAAGTCCACAACTCCGTGGCACCTTTTTCTTT
1 AAAGCCCACAACTCTGTGGCATCTTTTTCCTTTTAAGTCCACAACTCTGTGGCACC-----C-TT
* *
477093 TTAAAG-CCTACAACTCCGTGGCATCTTTTTCCTTTT
60 TT-AAGTCC-ACAACTCCGTGGCACCTTTTTCTTTTT
* ** * * * **
477129 -AAGTCCACAACTCCATGGCACCTTGTTCCTTTTAAGTCCACAACTCCGTGGCACATTTTTTTTA
1 AAAGCCCACAACTCTGTGGCATCTTTTTCCTTTTAAGTCCACAACTCTGTGGCAC---CCTTTT-
* * *
477193 AAGCCCACAACTCCATGGCA-CTCTTTCTATTTT
62 AAGTCCACAACTCCGTGGCACCTTTTTCT-TTTT
* * * * *
477226 TAAGTCCACAA-TTTCGTGACA-C-----CCTTTTAAGTCCACAACTCTGTGGTATCTTTTTCCT
1 AAAGCCCACAACTCT-GTGGCATCTTTTTCCTTTTAAGTCCACAACTCTGTGGCA-C-----CCT
* * * *
477284 TTTAAGTCCATAACTCCGTGACACCTTGTTCCTTTT
59 TTTAAGTCCACAACTCCGTGGCACCTTTTTCTTTTT
* ** * *
477320 -AAGTCCACAACTCCATGGCACCTTTTTCTTTTTAA
1 AAAGCCCACAACTCTGTGGCATCTTTTTCCTTTTAA
477355 AGCCCATAAC
Statistics
Matches: 591, Mismatches: 71, Indels: 83
0.79 0.10 0.11
Matches are distributed among these distances:
87 21 0.04
88 2 0.00
92 26 0.04
93 19 0.03
94 137 0.23
95 195 0.33
96 30 0.05
97 27 0.05
98 16 0.03
99 7 0.01
100 52 0.09
101 33 0.06
102 26 0.04
ACGTcount: A:0.22, C:0.29, G:0.12, T:0.37
Consensus pattern (94 bp):
AAAGCCCACAACTCTGTGGCATCTTTTTCCTTTTAAGTCCACAACTCTGTGGCACCCTTTTAAGT
CCACAACTCCGTGGCACCTTTTTCTTTTT
Found at i:477256 original size:192 final size:188
Alignment explanation
Indices: 476901--477381 Score: 578
Period size: 192 Copynumber: 2.5 Consensus size: 188
476891 TTAGTGGCAC
* ***
476901 CCTTTTAAGTCCACAACTCCGTGGCGTCTTTTTCCTTTTAAGTCCACAACTTTGTGGCACC---T
1 CCTTTTAAGTCCACAACTCCGTGGCATCTTTTTCCTTTTAAGTCCACAACTCCATGGCACCTTTT
* * * *
476963 -TTTTAAATCCACAAATCTGTGGCACCTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTT
66 CTTTTAAGTCCACAACTCCGTGGCA-C--TTT-TTTTTAAAGCCCACAACTCCATGGCACTCTTT
* * *
477027 TTCCTTTTAAGTCCACAACTCTGTGGCACCATTTTAAGTCCACAACTCCGTGGCACCTTTTT
127 CTACTTTTAAGTCCACAACTCTGTGACACCATTTTAAGTCCACAACTCCGTGGCACCTTTTT
*
477089 CTTTTTAAAG-CCTACAACTCCGTGGCATCTTTTTCCTTTTAAGTCCACAACTCCATGGCACCTT
1 CCTTTT-AAGTCC-ACAACTCCGTGGCATCTTTTTCCTTTTAAGTCCACAACTCCATGGCACCTT
477153 GTTCCTTTTAAGTCCACAACTCCGTGGCACATTTTTTTTAAAGCCCACAACTCCATGGCACTCTT
64 -TT-CTTTTAAGTCCACAACTCCGTGGCAC-TTTTTTTTAAAGCCCACAACTCCATGGCACTCTT
* * * * * *
477218 TCTATTTTTAAGTCCACAA-TTTCGTGACACCCTTTTAAGTCCACAACTCTGTGGTATCTTTTT
126 TCTACTTTTAAGTCCACAACTCT-GTGACACCATTTTAAGTCCACAACTCCGTGGCACCTTTTT
* * * *
477281 CCTTTTAAGTCCATAACTCCGTGACACCTTGTTCCTTTTAAGTCCACAACTCCATGGCACCTTTT
1 CCTTTTAAGTCCACAACTCCGTGGCATCTTTTTCCTTTTAAGTCCACAACTCCATGGCACC-TTT
* * *
477346 TCTTTTTAAAGCCCATAACTCCGTGACACTTTTTTT
65 TC-TTTT-AAGTCCACAACTCCGTGGCACTTTTTTT
477382 CCTTTTAAGT
Statistics
Matches: 253, Mismatches: 27, Indels: 23
0.83 0.09 0.08
Matches are distributed among these distances:
188 7 0.03
189 48 0.19
190 1 0.00
191 63 0.25
192 108 0.43
193 4 0.02
194 1 0.00
195 21 0.08
ACGTcount: A:0.22, C:0.29, G:0.12, T:0.37
Consensus pattern (188 bp):
CCTTTTAAGTCCACAACTCCGTGGCATCTTTTTCCTTTTAAGTCCACAACTCCATGGCACCTTTT
CTTTTAAGTCCACAACTCCGTGGCACTTTTTTTTAAAGCCCACAACTCCATGGCACTCTTTCTAC
TTTTAAGTCCACAACTCTGTGACACCATTTTAAGTCCACAACTCCGTGGCACCTTTTT
Found at i:477434 original size:95 final size:94
Alignment explanation
Indices: 477123--477800 Score: 617
Period size: 95 Copynumber: 7.1 Consensus size: 94
477113 GCATCTTTTT
* * * * *
477123 CCTTTTAAGTCCACAACTCCATGGCACCTTGTTCCTTTT-AAGTCCACAACTCCGTGGCAC-ATT
1 CCTTTTAAGTCCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACTTTT
* * * **
477186 TTT-TTTAAAGCCCACAACTCCATGGCAC
66 TTTCTTTTAAGTCCATAACTCTGTGGCAC
* * * * *
477214 TCTTTCTATTTTTAAGTCCACAATTTCGTGACACC-----C-TTTT-AAGTCCACAACTCTGTGG
1 -C---C---TTTTAAGTCCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCACAACTCCGTGG
* * * *
477272 TA-TCTTTTTCCTTTTAAGTCCATAACTCCGTGACACC
59 CACT-TTTTTTCTTTTAAGTCCATAACTCTGTGGCA-C
* * *
477309 TTGTTCCTTTTAAGTCCACAACTCCATGGCACCTTTTTCTTTTTAAAGCCCATAACTCCGTGACA
1 -----CCTTTTAAGTCCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCACAACTCCGTGGCA
*
477374 CTTTTTTTCCTTTTAAGTCCATAATTCTGTGGCAC
61 CTTTTTTT-CTTTTAAGTCCATAACTCTGTGGCAC
* * * *
477409 CCTTTTAAGTCTACAACTCCGTGGCATCTTTTTTTTTTTAAAGCCCAAAACTCCGTGGCA-TCTT
1 CCTTTTAAGTCCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACT-TT
* *
477473 TTTTCTTTTAAGTCCACAACTCCAG-GGCACC
65 TTTTCTTTTAAGTCCATAACT-CTGTGGCA-C
* * * * *
477504 TTGTTCCTTTTAAGTCCACAACTCCGTGGCACTTTTTTCTTTTTAAAGCCCATAACTTCTTGGTA
1 -----CCTTTTAAGTCCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCACAACTCCGTGGCA
* *
477569 CTCTTTTTCCTTTTAAATCCATAACTCTGTGGCAC
61 CT-TTTTTTCTTTTAAGTCCATAACTCTGTGGCAC
* * *
477604 CTTTTTAAGTCCACAACTCCGTGGCACCTTTTTCTTTTTTAAGCCCACAACTCCGTGGCACTCTT
1 CCTTTTAAGTCCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACTTTT
* *
477669 TTTCTTTTCAAAGTCCACAACTCTGTGACAC
66 TTTCTTTT--AAGTCCATAACTCTGTGGCAC
* * *
477700 CTTTTTAAGTCCACAATTCCGTGGCACCTTTTTCTTTTTAAAGCTCACAACTCCGTGGCACTCTT
1 CCTTTTAAGTCCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACT-TT
*
477765 TTTTCTTTTAAGTCCATAACTCCGTGGCAC
65 TTTTCTTTTAAGTCCATAACTCTGTGGCAC
477795 CCTTTT
1 CCTTTT
477801 CCTTTTTAAG
Statistics
Matches: 483, Mismatches: 67, Indels: 69
0.78 0.11 0.11
Matches are distributed among these distances:
92 23 0.05
93 27 0.06
94 48 0.10
95 143 0.30
96 78 0.16
97 10 0.02
98 23 0.05
99 6 0.01
100 76 0.16
101 49 0.10
ACGTcount: A:0.21, C:0.29, G:0.12, T:0.38
Consensus pattern (94 bp):
CCTTTTAAGTCCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACTTTT
TTTCTTTTAAGTCCATAACTCTGTGGCAC
Found at i:477441 original size:27 final size:27
Alignment explanation
Indices: 477382--477434 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
477372 CACTTTTTTT
* * *
477382 CCTTTTAAGTCCATAATTCTGTGGCAC
1 CCTTTTAAGTCCACAACTCCGTGGCAC
*
477409 CCTTTTAAGTCTACAACTCCGTGGCA
1 CCTTTTAAGTCCACAACTCCGTGGCA
477435 TCTTTTTTTT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.23, C:0.28, G:0.15, T:0.34
Consensus pattern (27 bp):
CCTTTTAAGTCCACAACTCCGTGGCAC
Found at i:477518 original size:195 final size:195
Alignment explanation
Indices: 477058--477800 Score: 776
Period size: 195 Copynumber: 3.8 Consensus size: 195
477048 TGTGGCACCA
* * * * * *
477058 TTTTAAGTCCACAACTCCGTGGCA-CCTTTTTCTTTTTAAAG-CCTACAACTCCGTGGCATCTTT
1 TTTTAAGCCCAAAACTCCGTGGCATCTTTTTTC-TTTT-AAGTCC-ACAACTCCGTGACACCTTG
* * * * * *
477121 TTCCTTTTAAGTCCACAACTCCATGGCACCTTGTTCCTTTT-AAGTCCACAACTCCGTGGCAC-A
63 TTCCTTTTAAGTCCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCATAACTCCGTGGCACTT
* * * ** * * *
477184 TTTTT--TTTAAAGCCCACAACTCCATGGCACTCTTTCTATTTTTAAGTCCACAATTTCGTGACA
128 TTTTTCCTTTTAAGTCCATAACTCTGTGGCAC-C---C---TTTTAAGTCCACAACTCCGTGGCA
477247 CC-----C--
186 CCTTTTTCTT
* * * * * *
477250 TTTTAAGTCCACAACTCTGTGGTATCTTTTTCCTTTTAAGTCCATAACTCCGTGACACCTTGTTC
1 TTTTAAGCCCAAAACTCCGTGGCATCTTTTTTCTTTTAAGTCCACAACTCCGTGACACCTTGTTC
* *
477315 CTTTTAAGTCCACAACTCCATGGCACCTTTTTCTTTTTAAAGCCCATAACTCCGTGACACTTTTT
66 CTTTTAAGTCCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCATAACTCCGTGGCACTTTTT
* * *
477380 TTCCTTTTAAGTCCATAATTCTGTGGCACCCTTTTAAGTCTACAACTCCGTGGCATCTTTTT-TT
131 TTCCTTTTAAGTCCATAACTCTGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCTTTTTCTT
*
477444 TTTTAAAGCCCAAAACTCCGTGGCATCTTTTTTCTTTTAAGTCCACAACTCCAG-GGCACCTTGT
1 TTTT-AAGCCCAAAACTCCGTGGCATCTTTTTTCTTTTAAGTCCACAACTCC-GTGACACCTTGT
* * * * *
477508 TCCTTTTAAGTCCACAACTCCGTGGCACTTTTTTCTTTTTAAAGCCCATAACTTCTTGGTACTCT
64 TCCTTTTAAGTCCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCATAACTCCGTGGCACTTT
* *
477573 TTTTCCTTTTAAATCCATAACTCTGTGGCACCTTTTTAAGTCCACAACTCCGTGGCACCTTTTTC
129 TTTTCCTTTTAAGTCCATAACTCTGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCTTTTTC
477638 TT
194 TT
* *
477640 TTTTAAGCCCACAACTCCGTGGCA-CTCTTTTTCTTTTCAAAGTCCACAACTCTGTGACACC---
1 TTTTAAGCCCAAAACTCCGTGGCATCT-TTTTTCTTTT--AAGTCCACAACTCCGTGACACCTTG
* * *
477701 -T--TTTTAAGTCCACAATTCCGTGGCACCTTTTTCTTTTTAAAGCTCACAACTCCGTGGCACTC
63 TTCCTTTTAAGTCCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCATAACTCCGTGGCACT-
*
477763 TTTTTT-CTTTTAAGTCCATAACTCCGTGGCACCCTTTT
127 TTTTTTCCTTTTAAGTCCATAACTCTGTGGCACCCTTTT
477801 CCTTTTTAAG
Statistics
Matches: 472, Mismatches: 58, Indels: 43
0.82 0.10 0.08
Matches are distributed among these distances:
188 21 0.04
191 140 0.30
192 51 0.11
193 12 0.03
194 7 0.01
195 215 0.46
196 8 0.02
197 18 0.04
ACGTcount: A:0.21, C:0.29, G:0.12, T:0.39
Consensus pattern (195 bp):
TTTTAAGCCCAAAACTCCGTGGCATCTTTTTTCTTTTAAGTCCACAACTCCGTGACACCTTGTTC
CTTTTAAGTCCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCATAACTCCGTGGCACTTTTT
TTCCTTTTAAGTCCATAACTCTGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCTTTTTCTT
Found at i:477611 original size:27 final size:27
Alignment explanation
Indices: 477579--477732 Score: 92
Period size: 27 Copynumber: 5.1 Consensus size: 27
477569 CTCTTTTTCC
* *
477579 TTTTAAATCCATAACTCTGTGGCACCT
1 TTTTAAATCCACAACTCCGTGGCACCT
*
477606 TTTTAAGTCCACAACTCCGTGGCACCTTTTTCTT
1 TTTTAAATCCACAACTCCGTGGCA-C-----C-T
**
477640 TTTTAAGCCCACAACTCCGTGGCACTCTTTTT
1 TTTTAAATCCACAACTCCGTGGCAC-C----T
* *
477672 CTTTTCAAAGTCCACAACTCTGTGACACCT
1 -TTTT-AAA-TCCACAACTCCGTGGCACCT
* *
477702 TTTTAAGTCCACAATTCCGTGGCACCT
1 TTTTAAATCCACAACTCCGTGGCACCT
477729 TTTT
1 TTTT
477733 CTTTTTAAAG
Statistics
Matches: 102, Mismatches: 12, Indels: 26
0.73 0.09 0.19
Matches are distributed among these distances:
27 42 0.41
28 3 0.03
29 6 0.06
30 1 0.01
32 2 0.02
33 6 0.06
34 27 0.26
35 15 0.15
ACGTcount: A:0.21, C:0.29, G:0.12, T:0.38
Consensus pattern (27 bp):
TTTTAAATCCACAACTCCGTGGCACCT
Found at i:477690 original size:69 final size:69
Alignment explanation
Indices: 477610--477901 Score: 234
Period size: 69 Copynumber: 4.4 Consensus size: 69
477600 GCACCTTTTT
*
477610 AAGTCCACAACTCCGTGGCACCTTTTTCTTTTTTAAGCCCACAACTCCGTGGCACTCTTTTTCTT
1 AAGTCCACAACTCCGTGGCACCTTTTTCTCTTTTAAGCCCACAACTCCGTGGCACTCTTTTTCTT
477675 TTCA
66 TTCA
* * * *
477679 AAGTCCACAACTCTGTGACA-C-----CT-TTTTAAGTCCACAATTCCGTGGCAC-CTTTTTCTT
1 AAGTCCACAACTCCGTGGCACCTTTTTCTCTTTTAAGCCCACAACTCCGTGGCACTCTTTTTCTT
*
477736 TTTA
66 TTCA
* * * *
477740 AAG-CTCACAACTCCGTGGCACTCTTTTT-TCTTTTAAGTCCATAACTCCGTGGCACCCTTTTCC
1 AAGTC-CACAACTCCGTGGCAC-CTTTTTCTCTTTTAAGCCCACAACTCCGTGGCACTCTTTTTC
*
477803 TTTT-T
64 TTTTCA
* * * * * * * * **
477808 AAGCCCATACCTCCATGGCATCCCTTTTCCCTTTTAAGCCCACACCTTCGTGGCA-TC-CCTT-T
1 AAGTCCACAACTCCGTGGCA-CCTTTTTCTCTTTTAAGCCCACAACTCCGTGGCACTCTTTTTCT
477870 TTTCTA
65 TTTC-A
* *
477876 TAAGTCCACAATTCTGTGGCACCTTT
1 -AAGTCCACAACTCCGTGGCACCTTT
477902 AAGTCCAATA
Statistics
Matches: 175, Mismatches: 32, Indels: 33
0.73 0.13 0.14
Matches are distributed among these distances:
60 1 0.01
61 28 0.16
62 23 0.13
63 3 0.02
66 4 0.02
67 2 0.01
68 49 0.28
69 65 0.37
ACGTcount: A:0.20, C:0.32, G:0.12, T:0.37
Consensus pattern (69 bp):
AAGTCCACAACTCCGTGGCACCTTTTTCTCTTTTAAGCCCACAACTCCGTGGCACTCTTTTTCTT
TTCA
Found at i:477705 original size:62 final size:62
Alignment explanation
Indices: 477639--477767 Score: 181
Period size: 62 Copynumber: 2.1 Consensus size: 62
477629 ACCTTTTTCT
*
477639 TTTTTAAGCCCACAACTCCGTGGCACTCTTTTTCTTTTCAAAG-TCCACAACTCTGTGACAC-C
1 TTTTTAAGCCCACAACTCCGTGGCAC-CTTTTTCTTTTCAAAGCT-CACAACTCCGTGACACTC
* * * *
477701 TTTTTAAGTCCACAATTCCGTGGCACCTTTTTCTTTTTAAAGCTCACAACTCCGTGGCACTC
1 TTTTTAAGCCCACAACTCCGTGGCACCTTTTTCTTTTCAAAGCTCACAACTCCGTGACACTC
477763 TTTTT
1 TTTTT
477768 TCTTTTAAGT
Statistics
Matches: 60, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
61 29 0.48
62 31 0.52
ACGTcount: A:0.21, C:0.29, G:0.12, T:0.38
Consensus pattern (62 bp):
TTTTTAAGCCCACAACTCCGTGGCACCTTTTTCTTTTCAAAGCTCACAACTCCGTGACACTC
Found at i:477833 original size:35 final size:35
Alignment explanation
Indices: 477750--477870 Score: 147
Period size: 35 Copynumber: 3.5 Consensus size: 35
477740 AAGCTCACAA
* ** * *
477750 CTCCGTGGCA-CTCTTTTTTCTTTTAAGTCCATAA
1 CTCCGTGGCATCCCTTTTCCCTTTTAAGCCCATAC
*
477784 CTCCGTGGCA-CCCTTTTCCTTTTTAAGCCCATAC
1 CTCCGTGGCATCCCTTTTCCCTTTTAAGCCCATAC
* *
477818 CTCCATGGCATCCCTTTTCCCTTTTAAGCCCACAC
1 CTCCGTGGCATCCCTTTTCCCTTTTAAGCCCATAC
*
477853 CTTCGTGGCATCCCTTTT
1 CTCCGTGGCATCCCTTTT
477871 TTCTATAAGT
Statistics
Matches: 75, Mismatches: 11, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
34 37 0.49
35 38 0.51
ACGTcount: A:0.15, C:0.36, G:0.12, T:0.38
Consensus pattern (35 bp):
CTCCGTGGCATCCCTTTTCCCTTTTAAGCCCATAC
Found at i:477971 original size:49 final size:49
Alignment explanation
Indices: 477898--478493 Score: 417
Period size: 49 Copynumber: 12.9 Consensus size: 49
477888 TCTGTGGCAC
* * * * *
477898 CTTTAAGTCCAATATCGTTGGCCTTGAATCAGTATATTAGCACCTTTAT
1 CTTTAAGACCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTTAT
* *
477947 CTTTAAGACCAATGTCGCTAGCCTTGAATCAGCACATTGGCA-C-----
1 CTTTAAGACCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTTAT
* *
477990 CTTTAAGTCTAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTTAT
1 CTTTAAGACCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTTAT
* * * *
478039 CTTTAAGTCCAATGTTGCAT-GCTTTGAATCAGCACATTGG---C---A-
1 CTTTAAGACCAATGTCGC-TGGCCTTGAATCAGCATATTGGCACCTTTAT
* * * *
478081 ---TAAG-CCTAATATCGATGGCCTTGAATCAGCATATTGGGACC-TTGT
1 CTTTAAGACC-AATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTTAT
* *
478126 CTTTAAGACTAATGTCGCTGGCCTTGAATCAGCACATTGG---C---A-
1 CTTTAAGACCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTTAT
* * * * *
478168 C---AAGCCCAATATCACTGGCCTTGAATCAGCATATTAGCACCTTCAT
1 CTTTAAGACCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTTAT
* * *
478214 TTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATT-G-----TCA-
1 CTTTAAGACCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTTAT
* * * *
478256 C---AAGCCCAATATCGCTGGCCTTGAATCAACATATTGGCACCTTCAT
1 CTTTAAGACCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTTAT
* * * * *
478302 CTTTAAGTCCGATATCGCTGACCTTGAATCAGTATATTGGCACCTTTAT
1 CTTTAAGACCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTTAT
* * * *
478351 CTTTAAGACCAATGTCGCTGGCCTTGAATTAGCACATTGGCATCTTCAT
1 CTTTAAGACCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTTAT
* ** * * * * *
478400 CTTTAAGTCTGATATCGTTGGCCTTGAATCAGCATATTGGCATCTGTAA
1 CTTTAAGACCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTTAT
*
478449 CATTCCTAA-ACCCAATGTCGCTGGCCTTGAATCAGCACATTGGCA
1 C-TT--TAAGA-CCAATGTCGCTGGCCTTGAATCAGCATATTGGCA
478494 TTCTTCTCAT
Statistics
Matches: 431, Mismatches: 73, Indels: 83
0.73 0.12 0.14
Matches are distributed among these distances:
38 3 0.01
39 87 0.20
40 1 0.00
42 3 0.01
43 42 0.10
44 1 0.00
45 5 0.01
46 2 0.00
48 33 0.08
49 219 0.51
50 3 0.01
52 32 0.07
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.32
Consensus pattern (49 bp):
CTTTAAGACCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTTAT
Found at i:478117 original size:39 final size:39
Alignment explanation
Indices: 478062--478198 Score: 114
Period size: 39 Copynumber: 3.3 Consensus size: 39
478052 GTTGCATGCT
478062 TTGAATCAGCACATTGGCATAAGCCTAATATCGATGGCC
1 TTGAATCAGCACATTGGCATAAGCCTAATATCGATGGCC
* * * * *
478101 TTGAATCAGCATATTGGGACCTTGTCTTTAAGACTAATGTCGCTGGCC
1 TTGAATCAGCACATT--G-----G-C-ATAAGCCTAATATCGATGGCC
* *
478149 TTGAATCAGCACATTGGCACAAGCCCAATATC-ACTGGCC
1 TTGAATCAGCACATTGGCATAAGCCTAATATCGA-TGGCC
478188 TTGAATCAGCA
1 TTGAATCAGCA
478199 TATTAGCACC
Statistics
Matches: 76, Mismatches: 12, Indels: 20
0.70 0.11 0.19
Matches are distributed among these distances:
39 39 0.51
40 1 0.01
41 2 0.03
46 2 0.03
47 1 0.01
48 31 0.41
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.27
Consensus pattern (39 bp):
TTGAATCAGCACATTGGCATAAGCCTAATATCGATGGCC
Found at i:478243 original size:175 final size:176
Alignment explanation
Indices: 477906--478344 Score: 558
Period size: 175 Copynumber: 2.5 Consensus size: 176
477896 ACCTTTAAGT
* * * *
477906 CCAATATCGTTGGCCTTGAATCAGTATATTAGCACCTTTATCTTTAAGACCAATGTCGCTAGCCT
1 CCAATATCGATGGCCTTGAATCAGCATATTGGCACC-TTATCTTTAAGACCAATGTCGCTGGCCT
* * * * *
477971 TGAATCAGCACATTGGCACCTTTAAGTCTAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTT
65 TGAATCAGCACATTGGCA-C--TAAGCCCAATATCACTGGCCTTGAATCAGCATATTAGCACCTT
* * * * *
478036 TATCTTTAAGTCCAATGTTGCATGCTTTGAATCAGCACATTGGCATAAGC
127 CATCTTTAAGACCAATGTCGCATGCCTTGAATCAGCACATTGGCACAAGC
* * * *
478086 CTAATATCGATGGCCTTGAATCAGCATATTGGGACCTTGTCTTTAAGACTAATGTCGCTGGCCTT
1 CCAATATCGATGGCCTTGAATCAGCATATTGGCACCTTATCTTTAAGACCAATGTCGCTGGCCTT
*
478151 GAATCAGCACATTGGCAC-AAGCCCAATATCACTGGCCTTGAATCAGCATATTAGCACCTTCATT
66 GAATCAGCACATTGGCACTAAGCCCAATATCACTGGCCTTGAATCAGCATATTAGCACCTTCATC
*
478215 TTTAAGACCAATGTCGC-TGGCCTTGAATCAGCACATTGTCACAAGC
131 TTTAAGACCAATGTCGCAT-GCCTTGAATCAGCACATTGGCACAAGC
* * * * * *
478261 CCAATATCGCTGGCCTTGAATCAACATATTGGCACCTTCATCTTTAAGTCCGATATCGCTGACCT
1 CCAATATCGATGGCCTTGAATCAGCATATTGGCACCTT-ATCTTTAAGACCAATGTCGCTGGCCT
* *
478326 TGAATCAGTATATTGGCAC
65 TGAATCAGCACATTGGCAC
478345 CTTTATCTTT
Statistics
Matches: 225, Mismatches: 32, Indels: 8
0.85 0.12 0.03
Matches are distributed among these distances:
174 1 0.00
175 112 0.50
176 37 0.16
178 1 0.00
179 43 0.19
180 31 0.14
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.31
Consensus pattern (176 bp):
CCAATATCGATGGCCTTGAATCAGCATATTGGCACCTTATCTTTAAGACCAATGTCGCTGGCCTT
GAATCAGCACATTGGCACTAAGCCCAATATCACTGGCCTTGAATCAGCATATTAGCACCTTCATC
TTTAAGACCAATGTCGCATGCCTTGAATCAGCACATTGGCACAAGC
Found at i:478258 original size:88 final size:88
Alignment explanation
Indices: 477906--478441 Score: 563
Period size: 88 Copynumber: 5.9 Consensus size: 88
477896 ACCTTTAAGT
* * * * *
477906 CCAATATCGTTGGCCTTGAATCAGTATATTAGCACCTTTATCTTTAAGACCAATGTCGCTAGCCT
1 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGACCAATGTCGCTGGCCT
*
477971 TGAATCAGCACATTGGCACCTTTAAGT
66 TGAATCAGCACATTGGCA-C---AAGC
* * * * * *
477998 CTAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTTGCAT-GCT
1 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGACCAATGTCGC-TGGCC
*
478062 TTGAATCAGCACATTGGCATAAGC
65 TTGAATCAGCACATTGGCACAAGC
* * * * *
478086 CTAATATCGATGGCCTTGAATCAGCATATTGGGACCTT-GTCTTTAAGACTAATGTCGCTGGCCT
1 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGACCAATGTCGCTGGCCT
478150 TGAATCAGCACATTGGCACAAGC
66 TGAATCAGCACATTGGCACAAGC
* * *
478173 CCAATATCACTGGCCTTGAATCAGCATATTAGCACCTTCATTTTTAAGACCAATGTCGCTGGCCT
1 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGACCAATGTCGCTGGCCT
*
478238 TGAATCAGCACATTGTCACAAGC
66 TGAATCAGCACATTGGCACAAGC
* * * * *
478261 CCAATATCGCTGGCCTTGAATCAACATATTGGCACCTTCATCTTTAAGTCCGATATCGCTGACCT
1 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGACCAATGTCGCTGGCCT
* * *
478326 TGAATCAGTATATTGGCACCTTTATCTTTAAGA
66 TGAATCAGCACATTGG---C---A-C---AAGC
* * * * * ** * *
478359 CCAATGTCGCTGGCCTTGAATTAGCACATTGGCATCTTCATCTTTAAGTCTGATATCGTTGGCCT
1 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGACCAATGTCGCTGGCCT
*
478424 TGAATCAGCATATTGGCA
66 TGAATCAGCACATTGGCA
478442 TCTGTAACAT
Statistics
Matches: 382, Mismatches: 49, Indels: 26
0.84 0.11 0.06
Matches are distributed among these distances:
86 1 0.00
87 74 0.19
88 153 0.40
91 1 0.00
92 74 0.19
93 1 0.00
94 1 0.00
95 2 0.01
98 75 0.20
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.32
Consensus pattern (88 bp):
CCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGACCAATGTCGCTGGCCT
TGAATCAGCACATTGGCACAAGC
Found at i:478518 original size:52 final size:50
Alignment explanation
Indices: 478261--478602 Score: 248
Period size: 49 Copynumber: 6.8 Consensus size: 50
478251 TGTCACAAGC
* * * *
478261 CCAATATCGCTGGCCTTGAATCAACATATTGGCA-CCTTCATCTTTAAGT
1 CCAATGTCGCTGGCCTTGAATCAGCACATTGGCATCTTTCATCTTTAAGT
* * * * * * *
478310 CCGATATCGCTGACCTTGAATCAGTATATTGGCACCTTT-ATCTTTAAGA
1 CCAATGTCGCTGGCCTTGAATCAGCACATTGGCATCTTTCATCTTTAAGT
*
478359 CCAATGTCGCTGGCCTTGAATTAGCACATTGGCATC-TTCATCTTTAAGT
1 CCAATGTCGCTGGCCTTGAATCAGCACATTGGCATCTTTCATCTTTAAGT
** * * * * * **
478408 CTGATATCGTTGGCCTTGAATCAGCATATTGGCATCTGTAACAT-TCCTAAAC
1 CCAATGTCGCTGGCCTTGAATCAGCACATTGGCATCT-T-TCATCT-TTAAGT
*
478460 CCAATGTCGCTGGCCTTGAATCAGCACATTGGCATTCTTCTCATCTTCAAGT
1 CCAATGTCGCTGGCCTTGAATCAGCACATTGGCA-TCTT-TCATCTTTAAGT
* * * * * *
478512 CTAATGTC-ATTGACTGTGAATTAGCACATTGACATTCTTTACATCTTTAAG-
1 CCAATGTCGCTGGCCT-TGAATCAGCACATTGGCA-TCTTT-CATCTTTAAGT
* * * * *
478563 CACAATATCACTGGTCC-TGAATTAGCATATTGGCACCTTT
1 C-CAATGTCGCTGG-CCTTGAATCAGCACATTGGCATCTTT
478603 ATCACTCTTC
Statistics
Matches: 230, Mismatches: 50, Indels: 24
0.76 0.16 0.08
Matches are distributed among these distances:
48 2 0.01
49 107 0.47
50 3 0.01
51 12 0.05
52 99 0.43
53 6 0.03
54 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.16, T:0.34
Consensus pattern (50 bp):
CCAATGTCGCTGGCCTTGAATCAGCACATTGGCATCTTTCATCTTTAAGT
Done.