Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold29
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 5511024
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 57772 characters in sequence are not A, C, G, or T
File 16 of 34
Found at i:2376849 original size:15 final size:15
Alignment explanation
Indices: 2376826--2376856 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
2376816 CCCTCCTTTC
*
2376826 TTTTTTATGCATTTA
1 TTTTGTATGCATTTA
2376841 TTTTGTATGCATTTA
1 TTTTGTATGCATTTA
2376856 T
1 T
2376857 CTGTTATTTC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.19, C:0.06, G:0.10, T:0.65
Consensus pattern (15 bp):
TTTTGTATGCATTTA
Found at i:2378292 original size:16 final size:16
Alignment explanation
Indices: 2378271--2378301 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
2378261 TAGACCCTTC
*
2378271 TTTTTTTTGTTTTTTG
1 TTTTTTTAGTTTTTTG
2378287 TTTTTTTAGTTTTTT
1 TTTTTTTAGTTTTTT
2378302 TTTAGACAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.03, C:0.00, G:0.10, T:0.87
Consensus pattern (16 bp):
TTTTTTTAGTTTTTTG
Found at i:2391069 original size:20 final size:20
Alignment explanation
Indices: 2391041--2391098 Score: 107
Period size: 20 Copynumber: 2.9 Consensus size: 20
2391031 GTAAAAAGAC
*
2391041 AGAATGTATCGATACATTGA
1 AGAACGTATCGATACATTGA
2391061 AGAACGTATCGATACATTGA
1 AGAACGTATCGATACATTGA
2391081 AGAACGTATCGATACATT
1 AGAACGTATCGATACATT
2391099 AAAAATGTGA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 37 1.00
ACGTcount: A:0.40, C:0.14, G:0.19, T:0.28
Consensus pattern (20 bp):
AGAACGTATCGATACATTGA
Found at i:2393096 original size:44 final size:44
Alignment explanation
Indices: 2392907--2393550 Score: 328
Period size: 44 Copynumber: 14.8 Consensus size: 44
2392897 GTTTTTTCCC
*
2392907 TTCTG-TTTGACGTATGGTTACCACCCTGGTCA-A-ACTTTTCTCA
1 TTCTGATTTGACGTATGGTTACCACCCTGGTCAGATTCTTTT-T-A
* * *
2392950 TT-TGAGGCTTGGCGTATGGTTACCACCCTGGTCAGATTCTTTTCA
1 TTCTGA--TTTGACGTATGGTTACCACCCTGGTCAGATTCTTTTTA
* * * *
2392995 TTATGATTTGATGTATGGTT---ACCTTGGTCA-AGTCTTTTCCT-
1 TTCTGATTTGACGTATGGTTACCACCCTGGTCAGATTCTTTT--TA
* * * * *
2393036 TTCT-ATCTAACATATGGTTACCACTCTGGTTAGATTCTTTTTA
1 TTCTGATTTGACGTATGGTTACCACCCTGGTCAGATTCTTTTTA
* * * *
2393079 TTATGATTTGATGTATGGTTACCACCCTGGTTA-AATCTTTTCCT-
1 TTCTGATTTGACGTATGGTTACCACCCTGGTCAGATTCTTTT--TA
* * * *
2393123 TTCT-ATCTGACATATGGTTACCACCCTGATCAGATTCTTTTCA
1 TTCTGATTTGACGTATGGTTACCACCCTGGTCAGATTCTTTTTA
* * * * *
2393166 TTCTGATTTGACGTATGGTTACCACCTTAGTCAAATT-TTCCTCTC
1 TTCTGATTTGACGTATGGTTACCACCCTGGTCAGATTCTT--TTTA
* * * * * *
2393211 TTTTG-TTTGACGCATGGTTACCACCCTGGTCAAACTCTTCTCA
1 TTCTGATTTGACGTATGGTTACCACCCTGGTCAGATTCTTTTTA
* * * * *
2393254 TTTCAAGA-CTGACATATCGTTACCACCTTGGTCAGA-TCTTTTTTA
1 -TTC-TGATTTGACGTATGGTTACCACCCTGGTCAGATTC-TTTTTA
** * *
2393299 TTAAGATTTGACGTATGGTTACCACCCTGGTTA-ATT-TTCCTTTC
1 TTCTGATTTGACGTATGGTTACCACCCTGGTCAGATTCTT--TTTA
* * * * * * *
2393343 TTCT-ATTTAACATATGGTCACC-CCCTGGTCAAACTCTTCTCA
1 TTCTGATTTGACGTATGGTTACCACCCTGGTCAGATTCTTTTTA
* ** * * *
2393385 TT-TCAAGCCTGACGTATGGTTACCACCCTAGTTAGATTCTTTTCA
1 TTCT-GA-TTTGACGTATGGTTACCACCCTGGTCAGATTCTTTTTA
* * * * * *
2393430 TTCTCATTTGACATATGGTTACTACCCTGGTCAAATCTACCTCTT-
1 TTCTGATTTGACGTATGGTTACCACCCTGGTCAGAT-T-CTTTTTA
* * * * *
2393475 TCCT-ATCTGACGTATGGTTACCACCCTAGTTAGATTCTTTTCA
1 TTCTGATTTGACGTATGGTTACCACCCTGGTCAGATTCTTTTTA
* * * *
2393518 TTCTGATTTGATGTATGGCTATCACCCTAGTCA
1 TTCTGATTTGACGTATGGTTACCACCCTGGTCA
2393551 AATATGCCTT
Statistics
Matches: 444, Mismatches: 116, Indels: 81
0.69 0.18 0.13
Matches are distributed among these distances:
40 18 0.04
41 13 0.03
42 19 0.04
43 74 0.17
44 222 0.50
45 85 0.19
46 8 0.02
47 5 0.01
ACGTcount: A:0.21, C:0.23, G:0.15, T:0.41
Consensus pattern (44 bp):
TTCTGATTTGACGTATGGTTACCACCCTGGTCAGATTCTTTTTA
Found at i:2393185 original size:131 final size:132
Alignment explanation
Indices: 2393048--2393460 Score: 437
Period size: 131 Copynumber: 3.1 Consensus size: 132
2393038 CTATCTAACA
* * * *
2393048 TATGGTTACCACTCTGGTTAGATTCTT-TTTATTATGATTTGATGTATGGTTACCACCCTGGTTA
1 TATGGTTACCACCCTGGTTA-ATT-TTCTTTCTTATGATTTGACGTATGGTTACCACCCTGGTCA
* * * *
2393112 AA-TCTTTTCCTTTCTA-TCTGACATATGGTTACCACCCTGATCAGATTCTTTTCATTCTGATTT
64 AACTCTTCTCATTTCAAGACTGACATATGGTTACCACCCTGATCAGATTCTTTTCATTCTGATTT
2393175 GACG
129 GACG
* * * * * *
2393179 TATGGTTACCACCTTAGTCAAATTTTCCTCTCTTTTG-TTTGACGCATGGTTACCACCCTGGTCA
1 TATGGTTACCACCCTGGT-TAATTTT-CTTTCTTATGATTTGACGTATGGTTACCACCCTGGTCA
* * * * **
2393243 AACTCTTCTCATTTCAAGACTGACATATCGTTACCACCTTGGTCAGA-TCTTTTTTATTAAGATT
64 AACTCTTCTCATTTCAAGACTGACATATGGTTACCACCCTGATCAGATTC-TTTTCATTCTGATT
2393307 TGACG
128 TGACG
* * * *
2393312 TATGGTTACCACCCTGGTTAATTTTCCTTTCTTCT-ATTTAACATATGGTCACC-CCCTGGTCAA
1 TATGGTTACCACCCTGGTTAATTTT-CTTTCTTATGATTTGACGTATGGTTACCACCCTGGTCAA
* * * *
2393375 ACTCTTCTCATTTCAAGCCTGACGTATGGTTACCACCCT-AGTTAGATTCTTTTCATTCTCATTT
65 ACTCTTCTCATTTCAAGACTGACATATGGTTACCACCCTGA-TCAGATTCTTTTCATTCTGATTT
*
2393439 GACA
129 GACG
*
2393443 TATGGTTACTACCCTGGT
1 TATGGTTACCACCCTGGT
2393461 CAAATCTACC
Statistics
Matches: 232, Mismatches: 41, Indels: 18
0.80 0.14 0.06
Matches are distributed among these distances:
130 2 0.01
131 124 0.53
132 49 0.21
133 57 0.25
ACGTcount: A:0.21, C:0.23, G:0.14, T:0.41
Consensus pattern (132 bp):
TATGGTTACCACCCTGGTTAATTTTCTTTCTTATGATTTGACGTATGGTTACCACCCTGGTCAAA
CTCTTCTCATTTCAAGACTGACATATGGTTACCACCCTGATCAGATTCTTTTCATTCTGATTTGA
CG
Found at i:2393578 original size:220 final size:216
Alignment explanation
Indices: 2392910--2393596 Score: 633
Period size: 220 Copynumber: 3.1 Consensus size: 216
2392900 TTTTCCCTTC
* * * * *
2392910 TGTTTGACGTATGGTTACCACCCTGGTCAAACTTTTCTCATTTGAGGCTTGGCGTATGGTTACCA
1 TGTTTGACATATGGTTACCACCCTGGTCAAACTCTTCTCATTTCAAGCTTGACGTATGGTTACCA
* * * * * *
2392975 CCCTGGTCAGATTCTTTTCATTATGATTTGATGTATGG-T--TACCTTGGTCAAGTCTTTTCCTT
66 CCCTAGTCAGATTCTTTTCATT-TCATTTGACGTATGGTTACTACCCTGGTCAAATCTTCT-CTT
* *
2393037 TCTATCTAACATATGGTTACCACTCTGGTTAGATTCTTTTTATTATGATTTGATGTATGGTTACC
129 TCTATCTGACATATGGTTACCACCCTGGTTAGATTCTTTTTATTATGATTTGATGTATGGTTACC
*
2393102 ACCCTGGTTAA-AT-CTTTTCCTT
194 ACCCTGGTTAATATCCTTTTTC-T
* * * * * * *
2393124 TCTATCTGACATATGGTTACCACCCTGATCAGATTCTTTTCA-TTC-TGATTTGACGTATGGTTA
1 TGT-T-TGACATATGGTTACCACCCTGGTCAAACTCTTCTCATTTCAAG-CTTGACGTATGGTTA
* * ** * *
2393187 CCACCTTAGTCAAATT-TTCCTCTC-TTTTGTTTGACGCATGGTTACCACCCTGGTCAAACTCTT
63 CCACCCTAGTCAGATTCTT--T-TCATTTCATTTGACGTATGGTTACTACCCTGGTCAAA-TCTT
* * * * * * *
2393250 CTCATTTCAAGACTGACATATCGTTACCACCTTGGTCAGA-TCTTTTTTATTAAGATTTGACGTA
124 CTC-TTTCTA-TCTGACATATGGTTACCACCCTGGTTAGATTC-TTTTTATTATGATTTGATGTA
*
2393314 TGGTTACCACCCTGGTTAATTTTCCTTTCTTC-
186 TGGTTACCACCCTGGTTAA-TATCCTTT-TTCT
* * * *
2393346 TATTTAACATATGGTCACC-CCCTGGTCAAACTCTTCTCATTTCAAGCCTGACGTATGGTTACCA
1 TGTTTGACATATGGTTACCACCCTGGTCAAACTCTTCTCATTTCAAGCTTGACGTATGGTTACCA
* * *
2393410 CCCTAGTTAGATTCTTTTCATTCTCATTTGACATATGGTTACTACCCTGGTCAAATCTACCTCTT
66 CCCTAGTCAGATTCTTTTCATT-TCATTTGACGTATGGTTACTACCCTGGTCAAATCT-TCTCTT
* * * * * *
2393475 TCCTATCTGACGTATGGTTACCACCCTAGTTAGATTCTTTTCATTCTGATTTGATGTATGGCTAT
129 T-CTATCTGACATATGGTTACCACCCTGGTTAGATTCTTTTTATTATGATTTGATGTATGGTTAC
* *
2393540 CACCCTAGTCAAATATGCCTTTTTCT
193 CACCCTGGT-TAATAT-CCTTTTTCT
* * *
2393566 TGTTTGACATATGGTTATCACCTTGATCAAA
1 TGTTTGACATATGGTTACCACCCTGGTCAAA
2393597 TGATTTGTAT
Statistics
Matches: 370, Mismatches: 74, Indels: 51
0.75 0.15 0.10
Matches are distributed among these distances:
214 5 0.01
215 40 0.11
216 34 0.09
217 2 0.01
218 13 0.04
219 95 0.26
220 159 0.43
221 13 0.04
222 3 0.01
223 4 0.01
224 2 0.01
ACGTcount: A:0.21, C:0.23, G:0.15, T:0.41
Consensus pattern (216 bp):
TGTTTGACATATGGTTACCACCCTGGTCAAACTCTTCTCATTTCAAGCTTGACGTATGGTTACCA
CCCTAGTCAGATTCTTTTCATTTCATTTGACGTATGGTTACTACCCTGGTCAAATCTTCTCTTTC
TATCTGACATATGGTTACCACCCTGGTTAGATTCTTTTTATTATGATTTGATGTATGGTTACCAC
CCTGGTTAATATCCTTTTTCT
Found at i:2393579 original size:88 final size:88
Alignment explanation
Indices: 2393393--2393587 Score: 257
Period size: 88 Copynumber: 2.2 Consensus size: 88
2393383 CATTTCAAGC
*
2393393 CTGACGTATGGTTACCACCCTAGTTAGATTCTTTTCATTCTCATTTGACATATGGTTACTACCCT
1 CTGACGTATGGTTACCACCCTAGTTAGATTCTTTTCATTCTCATTTGACATATGGCTACTACCCT
* *
2393458 GGTCAAATCTACCTCTTTCCTAT
66 AGTCAAATATACCTCTTTCCTAT
* **
2393481 CTGACGTATGGTTACCACCCTAGTTAGATTCTTTTCATTCTGATTTGATGTATGGCTA-TCACCC
1 CTGACGTATGGTTACCACCCTAGTTAGATTCTTTTCATTCTCATTTGACATATGGCTACT-ACCC
* * * *
2393545 TAGTCAAATATGCCTTTTTCTTGT
65 TAGTCAAATATACCTCTTTCCTAT
* * *
2393569 TTGACATATGGTTATCACC
1 CTGACGTATGGTTACCACC
2393588 TTGATCAAAT
Statistics
Matches: 93, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
87 1 0.01
88 92 0.99
ACGTcount: A:0.22, C:0.24, G:0.14, T:0.41
Consensus pattern (88 bp):
CTGACGTATGGTTACCACCCTAGTTAGATTCTTTTCATTCTCATTTGACATATGGCTACTACCCT
AGTCAAATATACCTCTTTCCTAT
Found at i:2395680 original size:19 final size:20
Alignment explanation
Indices: 2395643--2395680 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
2395633 TCCCGTTGCT
2395643 ATGTATCAATACAATTCATA
1 ATGTATCAATACAATTCATA
*
2395663 ATGTATCGATAC-ATTCAT
1 ATGTATCAATACAATTCAT
2395681 TTGAAATTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.39, C:0.16, G:0.08, T:0.37
Consensus pattern (20 bp):
ATGTATCAATACAATTCATA
Found at i:2395752 original size:13 final size:13
Alignment explanation
Indices: 2395734--2395763 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
2395724 ACAATTCTTC
2395734 ATGTATCGATACA
1 ATGTATCGATACA
*
2395747 ATGTATCGATATA
1 ATGTATCGATACA
2395760 ATGT
1 ATGT
2395764 GCCATGTATC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.37, C:0.10, G:0.17, T:0.37
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:2395754 original size:33 final size:32
Alignment explanation
Indices: 2395712--2395780 Score: 88
Period size: 33 Copynumber: 2.1 Consensus size: 32
2395702 GCCGTTTAGG
2395712 ACAATTATCGATACAAT-T-CTTCATGTATCGAT
1 ACAATTATCGATACAATGTGC--CATGTATCGAT
*
2395744 ACAATGTATCGATATAATGTGCCATGTATCGAT
1 ACAAT-TATCGATACAATGTGCCATGTATCGAT
2395777 ACAA
1 ACAA
2395781 ATAGTGGTAG
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
32 5 0.15
33 26 0.79
34 1 0.03
35 1 0.03
ACGTcount: A:0.36, C:0.17, G:0.13, T:0.33
Consensus pattern (32 bp):
ACAATTATCGATACAATGTGCCATGTATCGAT
Found at i:2400203 original size:20 final size:20
Alignment explanation
Indices: 2400178--2400230 Score: 65
Period size: 20 Copynumber: 2.6 Consensus size: 20
2400168 GTTACAAGCT
2400178 ATGTATCGATACATT-T-CTTC
1 ATGTATCGATACATTGTAC--C
*
2400198 ATGTATCGATACCTTGTACC
1 ATGTATCGATACATTGTACC
2400218 ATGTATCGATACA
1 ATGTATCGATACA
2400231 AATAGTGATA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
20 27 0.93
21 1 0.03
22 1 0.03
ACGTcount: A:0.28, C:0.21, G:0.13, T:0.38
Consensus pattern (20 bp):
ATGTATCGATACATTGTACC
Found at i:2402179 original size:27 final size:27
Alignment explanation
Indices: 2402141--2402209 Score: 129
Period size: 27 Copynumber: 2.6 Consensus size: 27
2402131 TACAAGGAAT
*
2402141 GTTGTATCGATACATCTGGGTTTTCTA
1 GTTGTATCGATACATCTGGGTTTTCCA
2402168 GTTGTATCGATACATCTGGGTTTTCCA
1 GTTGTATCGATACATCTGGGTTTTCCA
2402195 GTTGTATCGATACAT
1 GTTGTATCGATACAT
2402210 GTCACTATGT
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
27 41 1.00
ACGTcount: A:0.20, C:0.16, G:0.22, T:0.42
Consensus pattern (27 bp):
GTTGTATCGATACATCTGGGTTTTCCA
Found at i:2406927 original size:21 final size:21
Alignment explanation
Indices: 2406901--2406956 Score: 80
Period size: 19 Copynumber: 2.8 Consensus size: 21
2406891 CTGCCAGTTT
**
2406901 CATGTATCGATACAATTTGTC
1 CATGTATCGATACAATTTGAA
2406922 CATGTATCGATAC-A-TTGAA
1 CATGTATCGATACAATTTGAA
2406941 CATGTATCGATACAAT
1 CATGTATCGATACAAT
2406957 GTATGGATAC
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
19 16 0.52
20 2 0.06
21 13 0.42
ACGTcount: A:0.34, C:0.18, G:0.14, T:0.34
Consensus pattern (21 bp):
CATGTATCGATACAATTTGAA
Found at i:2407689 original size:21 final size:21
Alignment explanation
Indices: 2407648--2407686 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
2407638 TAAGAGCTTA
2407648 CAAAATGCATAAAACATGGCT
1 CAAAATGCATAAAACATGGCT
*
2407669 CAAAATGCAT-GAACATGG
1 CAAAATGCATAAAACATGG
2407687 GCTGTTTAGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.46, C:0.18, G:0.18, T:0.18
Consensus pattern (21 bp):
CAAAATGCATAAAACATGGCT
Found at i:2414975 original size:47 final size:47
Alignment explanation
Indices: 2414844--2414976 Score: 178
Period size: 47 Copynumber: 2.9 Consensus size: 47
2414834 GCCGTGCTCA
** * *
2414844 TGGAGTTGCTGTTGGTTGCTCATGGAAGCTGCTGCTG-TGTGGAAGC
1 TGGAGTTGCTGCCGGTTGCTCGTGGAAGCTGCTGCTGCCGTGGAAGC
* * * * *
2414890 TAGAGTTGTTGCCGGTTGCTCGTGGAAGATGTTTCTGCCGTGGAAGC
1 TGGAGTTGCTGCCGGTTGCTCGTGGAAGCTGCTGCTGCCGTGGAAGC
2414937 TGGAGTTGCTGCCGGTTGCTCGTGGAAGCTGCTGCTGCCG
1 TGGAGTTGCTGCCGGTTGCTCGTGGAAGCTGCTGCTGCCG
2414977 GTTGCTAGAG
Statistics
Matches: 72, Mismatches: 14, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
46 29 0.40
47 43 0.60
ACGTcount: A:0.12, C:0.19, G:0.38, T:0.31
Consensus pattern (47 bp):
TGGAGTTGCTGCCGGTTGCTCGTGGAAGCTGCTGCTGCCGTGGAAGC
Found at i:2415722 original size:13 final size:14
Alignment explanation
Indices: 2415677--2415709 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
2415667 CATGATGATT
*
2415677 TTTTTTTACTTTCA
1 TTTTTTTACTTTAA
2415691 TTTTTTTACTTTAA
1 TTTTTTTACTTTAA
2415705 TTTTT
1 TTTTT
2415710 ATTTTTTACT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.15, C:0.09, G:0.00, T:0.76
Consensus pattern (14 bp):
TTTTTTTACTTTAA
Found at i:2416405 original size:42 final size:42
Alignment explanation
Indices: 2416223--2416862 Score: 620
Period size: 42 Copynumber: 15.1 Consensus size: 42
2416213 TAGATTAGAC
* * * *
2416223 AGTCTTCAAGGTCAAAGCCGACAGGCAGACTGAGGGATAGAAA
1 AGTCTCCAGGGTCAAAGCCGACAGGCAGACTAAGGG-TAGGAA
* * * *
2416266 AGTCTCCAAGGTCAAAGCTGACAGGCATACTGAGGGATAGGAA
1 AGTCTCCAGGGTCAAAGCCGACAGGCAGACTAAGGG-TAGGAA
* * * *
2416309 AGTCTCCAGGGTCAAAGCCAACAGACAAACTTTAGGGATAGGAA
1 AGTCTCCAGGGTCAAAGCCGACAGGCAGAC-TAAGGG-TAGGAA
* * *
2416353 AGTCTTCAGGGTCAAAGCCAATAGGCAGACTAAGGGTAGGAA
1 AGTCTCCAGGGTCAAAGCCGACAGGCAGACTAAGGGTAGGAA
*
2416395 AGTCTCCAGGGTCAAAG-CGACAGGTAGACTAAGGGATAGGAA
1 AGTCTCCAGGGTCAAAGCCGACAGGCAGACTAAGGG-TAGGAA
* * * * *
2416437 AGTCTCCAGGGCCAAAGCTGACAAGCAGACTAAGGGAAAGAA
1 AGTCTCCAGGGTCAAAGCCGACAGGCAGACTAAGGGTAGGAA
** * * * *
2416479 AGTCTGTAGGGTCAAAGCCGATAGGCAGACTAAAGGAAAGAA
1 AGTCTCCAGGGTCAAAGCCGACAGGCAGACTAAGGGTAGGAA
* * * *
2416521 AGTCTCAAAGGTCAAAGCCGACAGGCAGACTAAAGGAAGGAA
1 AGTCTCCAGGGTCAAAGCCGACAGGCAGACTAAGGGTAGGAA
* * *
2416563 AGTCTCCAGGGTCAAAGCCGATAGGTAGACTAAGGGATAGAAA
1 AGTCTCCAGGGTCAAAGCCGACAGGCAGACTAAGGG-TAGGAA
* * * **
2416606 AGTCTCCAAGGTCAAAGCCGACAGGCAGACTCAGGGAAAAAA
1 AGTCTCCAGGGTCAAAGCCGACAGGCAGACTAAGGGTAGGAA
* * * **
2416648 AGTCTCCAGGGTCAAAGCCGATAGGCAGACT-ATGGAAAAAA
1 AGTCTCCAGGGTCAAAGCCGACAGGCAGACTAAGGGTAGGAA
* **
2416689 AGTCTCCAGGGTCAAAGCCGAAAGGCAGACTAAGGGTAAAAA
1 AGTCTCCAGGGTCAAAGCCGACAGGCAGACTAAGGGTAGGAA
* * * ** * * * **
2416731 AGTCTCTAGAGTCGAAGCCGGTAGGCAGATTGAGGGAAAAAA
1 AGTCTCCAGGGTCAAAGCCGACAGGCAGACTAAGGGTAGGAA
* * * *
2416773 AGTCTCTAGGGTCAAAGCCGACAAGTAGACTAAGGGAAGGAA
1 AGTCTCCAGGGTCAAAGCCGACAGGCAGACTAAGGGTAGGAA
** *
2416815 AGTCTGTAGGGTCAAAGCCGAGAGGCAGACTAAGGGATA-GAA
1 AGTCTCCAGGGTCAAAGCCGACAGGCAGACTAAGGG-TAGGAA
2416857 AGTCTC
1 AGTCTC
2416863 TAGAAGTTTA
Statistics
Matches: 511, Mismatches: 80, Indels: 13
0.85 0.13 0.02
Matches are distributed among these distances:
41 54 0.11
42 298 0.58
43 121 0.24
44 38 0.07
ACGTcount: A:0.38, C:0.18, G:0.30, T:0.14
Consensus pattern (42 bp):
AGTCTCCAGGGTCAAAGCCGACAGGCAGACTAAGGGTAGGAA
Found at i:2416453 original size:84 final size:85
Alignment explanation
Indices: 2416223--2416862 Score: 718
Period size: 84 Copynumber: 7.6 Consensus size: 85
2416213 TAGATTAGAC
* * * * * *
2416223 AGTCTTCAAGGTCAAAGCCGACAGGCAGACTGAGGGATAGAAAAGTCTCCAAGGTCAAAGCTGAC
1 AGTCTCCAGGGTCAAAGCCGATAGGCAGACTAAGGGATAGAAAAGTCTCCAGGGTCAAAGCCGAC
* *
2416288 AGGCATACTGAGGGATAGGAA
66 AGGCAGACTAAGGGA-AGGAA
* * * * * * * *
2416309 AGTCTCCAGGGTCAAAGCCAACAGACAAACTTTAGGGATAGGAAAGTCTTCAGGGTCAAAGCCAA
1 AGTCTCCAGGGTCAAAGCCGATAGGCAGAC-TAAGGGATAGAAAAGTCTCCAGGGTCAAAGCCGA
* *
2416374 TAGGCAGACTAAGGGTAGGAA
65 CAGGCAGACTAAGGGAAGGAA
* * * * *
2416395 AGTCTCCAGGGTCAAAG-CGACAGGTAGACTAAGGGATAGGAAAGTCTCCAGGGCCAAAGCTGAC
1 AGTCTCCAGGGTCAAAGCCGATAGGCAGACTAAGGGATAGAAAAGTCTCCAGGGTCAAAGCCGAC
* *
2416459 AAGCAGACTAAGGGAAAGAA
66 AGGCAGACTAAGGGAAGGAA
** * * * *
2416479 AGTCTGTAGGGTCAAAGCCGATAGGCAGACTAAAGGAAAG-AAAGTCTCAAAGGTCAAAGCCGAC
1 AGTCTCCAGGGTCAAAGCCGATAGGCAGACTAAGGGATAGAAAAGTCTCCAGGGTCAAAGCCGAC
*
2416543 AGGCAGACTAAAGGAAGGAA
66 AGGCAGACTAAGGGAAGGAA
* *
2416563 AGTCTCCAGGGTCAAAGCCGATAGGTAGACTAAGGGATAGAAAAGTCTCCAAGGTCAAAGCCGAC
1 AGTCTCCAGGGTCAAAGCCGATAGGCAGACTAAGGGATAGAAAAGTCTCCAGGGTCAAAGCCGAC
* **
2416628 AGGCAGACTCAGGGAAAAAA
66 AGGCAGACTAAGGGAAGGAA
* * *
2416648 AGTCTCCAGGGTCAAAGCCGATAGGCAGACT-ATGGA-AAAAAAGTCTCCAGGGTCAAAGCCGAA
1 AGTCTCCAGGGTCAAAGCCGATAGGCAGACTAAGGGATAGAAAAGTCTCCAGGGTCAAAGCCGAC
*
2416711 AGGCAGACTAAGGGTAA-AAA
66 AGGCAGACTAAGGG-AAGGAA
* * * * * * * *
2416731 AGTCTCTAGAGTCGAAGCCGGTAGGCAGATTGAGGGA-AAAAAAGTCTCTAGGGTCAAAGCCGAC
1 AGTCTCCAGGGTCAAAGCCGATAGGCAGACTAAGGGATAGAAAAGTCTCCAGGGTCAAAGCCGAC
* *
2416795 AAGTAGACTAAGGGAAGGAA
66 AGGCAGACTAAGGGAAGGAA
** *
2416815 AGTCTGTAGGGTCAAAGCCGAGAGGCAGACTAAGGGATAG-AAAGTCTC
1 AGTCTCCAGGGTCAAAGCCGATAGGCAGACTAAGGGATAGAAAAGTCTC
2416863 TAGAAGTTTA
Statistics
Matches: 471, Mismatches: 76, Indels: 16
0.84 0.13 0.03
Matches are distributed among these distances:
83 68 0.14
84 220 0.47
85 96 0.20
86 47 0.10
87 40 0.08
ACGTcount: A:0.38, C:0.18, G:0.30, T:0.14
Consensus pattern (85 bp):
AGTCTCCAGGGTCAAAGCCGATAGGCAGACTAAGGGATAGAAAAGTCTCCAGGGTCAAAGCCGAC
AGGCAGACTAAGGGAAGGAA
Found at i:2416866 original size:126 final size:126
Alignment explanation
Indices: 2416233--2416866 Score: 711
Period size: 126 Copynumber: 5.0 Consensus size: 126
2416223 AGTCTTCAAG
* * * * * * *
2416233 GTCAAAGCCGACAGGCAGACTGAGGGATAGAAAAGTCTCCAAGGTCAAAGCTGACAGGCATACTG
1 GTCAAAGCCGATAGGCAGACTAAGGGA-AAAAAAGTCTCCAGGGTCAAAGCCGACAGGCAGACTA
* * * *
2416298 AGGGATAGGAAAGTCTCCAGGGTCAAAGCCAACAGACAAACTTTAGGGATAGGAAAGTCT-TCAG
65 AGGGA-AGGAAAGTCTCCAGGGTCAAAGCCGACAGGCAGAC-TAAGGGATA-GAAAGTCTCT-AG
*
2416362 G
126 A
* * ** *
2416363 GTCAAAGCCAATAGGCAGACTAAGGGTAGGAAAGTCTCCAGGGTCAAAG-CGACAGGTAGACTAA
1 GTCAAAGCCGATAGGCAGACTAAGGGAAAAAAAGTCTCCAGGGTCAAAGCCGACAGGCAGACTAA
* * * * * *
2416427 GGGATAGGAAAGTCTCCAGGGCCAAAGCTGACAAGCAGACTAAGGGAAAGAAAGTCTGTAGG
66 GGGA-AGGAAAGTCTCCAGGGTCAAAGCCGACAGGCAGACTAAGGGATAGAAAGTCTCTAGA
* * * *
2416489 GTCAAAGCCGATAGGCAGACTAAAGGAAAGAAAGTCTCAAAGGTCAAAGCCGACAGGCAGACTAA
1 GTCAAAGCCGATAGGCAGACTAAGGGAAAAAAAGTCTCCAGGGTCAAAGCCGACAGGCAGACTAA
* * * *
2416554 AGGAAGGAAAGTCTCCAGGGTCAAAGCCGATAGGTAGACTAAGGGATAGAAAAGTCTCCA-A
66 GGGAAGGAAAGTCTCCAGGGTCAAAGCCGACAGGCAGACTAAGGGATAG-AAAGTCTCTAGA
* * *
2416615 GGTCAAAGCCGACAGGCAGACTCAGGGAAAAAAAGTCTCCAGGGTCAAAGCCGATAGGCAGACT-
1 -GTCAAAGCCGATAGGCAGACTAAGGGAAAAAAAGTCTCCAGGGTCAAAGCCGACAGGCAGACTA
* ** * *
2416679 ATGGAAAAAAAGTCTCCAGGGTCAAAGCCGAAAGGCAGACTAAGGG-TAAAAAAGTCTCTAGA
65 AGGGAAGGAAAGTCTCCAGGGTCAAAGCCGACAGGCAGACTAAGGGAT-AGAAAGTCTCTAGA
* * * * * * *
2416741 GTCGAAGCCGGTAGGCAGATTGAGGGAAAAAAAGTCTCTAGGGTCAAAGCCGACAAGTAGACTAA
1 GTCAAAGCCGATAGGCAGACTAAGGGAAAAAAAGTCTCCAGGGTCAAAGCCGACAGGCAGACTAA
** *
2416806 GGGAAGGAAAGTCTGTAGGGTCAAAGCCGAGAGGCAGACTAAGGGATAGAAAGTCTCTAGA
66 GGGAAGGAAAGTCTCCAGGGTCAAAGCCGACAGGCAGACTAAGGGATAGAAAGTCTCTAGA
2416867 AGTTTAATGA
Statistics
Matches: 431, Mismatches: 65, Indels: 20
0.84 0.13 0.04
Matches are distributed among these distances:
125 64 0.15
126 189 0.44
127 90 0.21
128 45 0.10
129 20 0.05
130 23 0.05
ACGTcount: A:0.38, C:0.18, G:0.30, T:0.14
Consensus pattern (126 bp):
GTCAAAGCCGATAGGCAGACTAAGGGAAAAAAAGTCTCCAGGGTCAAAGCCGACAGGCAGACTAA
GGGAAGGAAAGTCTCCAGGGTCAAAGCCGACAGGCAGACTAAGGGATAGAAAGTCTCTAGA
Found at i:2417410 original size:40 final size:40
Alignment explanation
Indices: 2417355--2417440 Score: 163
Period size: 40 Copynumber: 2.1 Consensus size: 40
2417345 AGGGTAAATT
2417355 TTCTTTTTCCAAAACATTACCTTAGATCATTAACTATCCA
1 TTCTTTTTCCAAAACATTACCTTAGATCATTAACTATCCA
2417395 TTCTTTTTCCAAAACATTACCTTAGATCATTAACTATCCA
1 TTCTTTTTCCAAAACATTACCTTAGATCATTAACTATCCA
*
2417435 TCCTTT
1 TTCTTT
2417441 ACCTTTTCTA
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 45 1.00
ACGTcount: A:0.30, C:0.26, G:0.02, T:0.42
Consensus pattern (40 bp):
TTCTTTTTCCAAAACATTACCTTAGATCATTAACTATCCA
Found at i:2421938 original size:627 final size:636
Alignment explanation
Indices: 2421082--2424134 Score: 3926
Period size: 668 Copynumber: 4.7 Consensus size: 636
2421072 GCCGGCCGCC
* * *
2421082 TTCGTCCCCACATATGTCCAATCCTCCACCAACTAGCTAAGCCTCAAGTTGTCAAAAATTGGCCC
1 TTCGTCCCCACATATGTCCAATCCTCCACCTACTAGCTAGGCCTCAAGTTGTCGAAAATTGGCCC
* * *
2421147 AGACAAAATGAGGTGTCTACAGCTGCCCTTCTTTGGCCGTTTCTGAGTATCAGGAACAGGGCAAA
66 GGACAAAATGAGGTGTCTACAGCTGCCCCTCTTTGGCCGTTTCTGAGTATCAGGAACAAGGCAAA
*
2421212 GACAAATAGACACCATTTTGTCTGCGGTCGCATGTTGTGACCTTTGGGTGATTAATGCTTCGTCG
131 GACAAATAGACACCATTTTGTCTGCGGCCGCATGTTGTGACCTTTGGGTGATTAATGCTTCGTCG
* * ** * * * * * *
2421277 TGATCAAGAATGCATTGGTAGCGGTTCTGATCGAAAAATGAGCTCGTAAGGTTTGTCCTCCTTAC
196 TGATGAAGAATGTATTGGCGGCGGTTCCGATCGAAAAGTGAGTTTGTAGGGTTTGTCCTCCCTAC
* *
2421342 TAGGTTTTGGAATTTTCTAAGGCTTGACCTCCTTAGATAGCTGTAGATTGGTGTAGAGTTTTGAA
261 TAGGTTTTGGAATTTTCTAAGGCTTGACCTCCTTAGATAGGTGTAGATTGGTGTAGAGTTTGGAA
2421407 GGGATTTGGAAGGATATGGTCAGTGTTTTGCAATGTGCCACTGTGCAGATGTATCGATACAAAGA
326 GGGATTTGGAAGGATATGGTCAGTGTTTTGCAATGTGCCACTGTGCAGATGTATCGATACAAAGA
2421472 TCAATG-TC-T-CAATAC-AATGTATCGATACATTTCCTTGGCAGTAGCTTTGTAGCGATACATT
391 TCAATGATCATACAATACTAATGTATCGATACATTTCCTTGGCAGTAGCTTTGTAGCGATACATT
2421533 GTATCG-ATA-TA-ACACT-TATGTATCGATACAAATTGTTGAAATTCAAAATGTTTGACCATTG
456 GTATCGAATATTATACACTATATGTATCGATACAAATTGTTGAAATTCAAAATGTTTGACCATTG
* *
2421594 GGACCTTGTATTGGTACATTCTAGAAATGTATCGATACATTTGGACAAAAATGTGTTTTTTTCAT
521 GGACCTTGTATTGATACATTCTAGAAATGTATCGATACATTTGGACAAAAATGTGATTTTTTCAT
* *
2421659 CCTTTTTGACTTCTGAACACTCTATCTCGACTAAGGATGATAGGAAATGAA
586 CCTTTTTGCCTTCTGAACACTCTATCTCGACTAAGGACGATAGGAAATGAA
2421710 TTCGTCCCCACATATGTCCAATCCTCCACCTACTAGCTAGGCCTCAAGTTGTCGAAAATTGGCCC
1 TTCGTCCCCACATATGTCCAATCCTCCACCTACTAGCTAGGCCTCAAGTTGTCGAAAATTGGCCC
* * * * *
2421775 GGACAAAATGAGGCGTTTACAGCTGCCCCACTTT-GTCGTTTCTGAGTATCAGGGACAAGGCAAA
66 GGACAAAATGAGGTGTCTACAGCTGCCCCTCTTTGGCCGTTTCTGAGTATCAGGAACAAGGCAAA
* * * * * *
2421839 GACAAATAGATACCATTTTGTCCGCGACCGCATGTTATGACCTTTGGGTGATTAATGCTTTGCCG
131 GACAAATAGACACCATTTTGTCTGCGGCCGCATGTTGTGACCTTTGGGTGATTAATGCTTCGTCG
* * *
2421904 TGATGAAGAATGTATTGGCGGTGGTTCCGATCGAAAAGTGAGATTGTAGGGTTTTTCCTCCCTAC
196 TGATGAAGAATGTATTGGCGGCGGTTCCGATCGAAAAGTGAGTTTGTAGGGTTTGTCCTCCCTAC
* *
2421969 TAGGTTGTGGAATTTTCTAAGGGTTGACCTCCTTAGATAGGTGTAGATTGGTGTAGAGTTTGGAA
261 TAGGTTTTGGAATTTTCTAAGGCTTGACCTCCTTAGATAGGTGTAGATTGGTGTAGAGTTTGGAA
*
2422034 GGGATTTGGAAGGATATGGTCAGTGTTTTGCAATGTGCCACTATGCAGATGTATCGATACAAAGA
326 GGGATTTGGAAGGATATGGTCAGTGTTTTGCAATGTGCCACTGTGCAGATGTATCGATACAAAGA
*
2422099 TCAATGTATCAATACAATGTATCGATACATTGAATAATGTATCGATACATTTCCTTGGCAGTAAC
391 TCAATG-ATC-ATAC-----A---ATAC------TAATGTATCGATACATTTCCTTGGCAGTAGC
*
2422164 TTTGTAACGATACATTGTATCGATATAACACTTATGTATCGATACAATTACTATTTGTATCGATA
440 TTTGTAGCGATACATTGTATCGA-AT---A-TTA--TA-C---AC---TA-TA--TGTATCGATA
* * *
2422229 CAAATTGTTGAAATTCAAAATGTTTGACCGTTGGGACCCTGTATGGATACATTCTAGAAATGTAT
488 CAAATTGTTGAAATTCAAAATGTTTGACCATTGGGACCTTGTATTGATACATTCTAGAAATGTAT
* *
2422294 CGATATATTTGGACAAAAATGTGATTTTTTCATCTTTTTTGCCTTCTGAACACTCTATCTCGACT
553 CGATACATTTGGACAAAAATGTGATTTTTTCATCCTTTTTGCCTTCTGAACACTCTATCTCGACT
2422359 AAGGACGATAGGAAATGAA
618 AAGGACGATAGGAAATGAA
* *
2422378 TTTGTCCCGACATATGTCCAATCCTCCACCTACTAGCTAGGCCTCAAGTTGTCGAAAATTGGCCC
1 TTCGTCCCCACATATGTCCAATCCTCCACCTACTAGCTAGGCCTCAAGTTGTCGAAAATTGGCCC
* * * * **
2422443 GGACAAAATGAGGTGTCTACAGTTGCCCCACTTTGGCCTTTTCTGAGTATCAAGCCCAAGGCAAA
66 GGACAAAATGAGGTGTCTACAGCTGCCCCTCTTTGGCCGTTTCTGAGTATCAGGAACAAGGCAAA
* *
2422508 GACAAATAGACACCATTTTGTCTGCGGCCGCATGCTGTGACCTTTGGGTGATAAATGCTTCGTCG
131 GACAAATAGACACCATTTTGTCTGCGGCCGCATGTTGTGACCTTTGGGTGATTAATGCTTCGTCG
* * * * * * *
2422573 TGGTGAAGAATGTATTGGTGGCGGTTCTGATCGAAAAATGAGTTTATAGGGTCTGTCCTCCTTAC
196 TGATGAAGAATGTATTGGCGGCGGTTCCGATCGAAAAGTGAGTTTGTAGGGTTTGTCCTCCCTAC
* * * * *
2422638 TAGGTTTTGGAATTTTATGAGGCTTGACCTCCTAAGATAGGTGTATATTGGTGTAGAGTTTGCAA
261 TAGGTTTTGGAATTTTCTAAGGCTTGACCTCCTTAGATAGGTGTAGATTGGTGTAGAGTTTGGAA
2422703 GGGATTTGGAAGGATATGGTCAGTGTTTTGCAATGTGCCACTGTGCAGATGTATCGATACAAAGA
326 GGGATTTGGAAGGATATGGTCAGTGTTTTGCAATGTGCCACTGTGCAGATGTATCGATACAAAGA
* * *
2422768 TCAATGTATCAATGTAATGTATCGATACATTGAATAATGTAACGATACATTTCCTTGGTAGTAGC
391 TCAATG-ATC------A--TA-C---A-A-T-ACTAATGTATCGATACATTTCCTTGGCAGTAGC
** * * * * *
2422833 TTTGTATTGATACATTGTGTCAACACAACACTTATGTATCGATACATTTACTGTTTGTATTGATA
440 TTTGTAGCGATACA-T-TGT--A-TCGA-A--TA--T-T--ATAC----ACTATATGTATCGATA
*
2422898 CAAATTGTTGAAATTCAAAAT-TTTGACCATTGGGACCTTGTATCGATACATTCTAGAAATGTAT
488 CAAATTGTTGAAATTCAAAATGTTTGACCATTGGGACCTTGTATTGATACATTCTAGAAATGTAT
*
2422962 CGATACATTTGGACAAAAATGTGATTTTTTTATCCTTTTTGCCTTCTGAACACTCTATCTC-AGC
553 CGATACATTTGGACAAAAATGTGATTTTTTCATCCTTTTTGCCTTCTGAACACTCTATCTCGA-C
*
2423026 TAAGGACGATAGTAAATGAA
617 TAAGGACGATAGGAAATGAA
* **
2423046 TTCGTCCCCACATATGTCCAATCCTCCACCTACTAGCTAGGCCTCAAGTTGCCGAAAATTGATCC
1 TTCGTCCCCACATATGTCCAATCCTCCACCTACTAGCTAGGCCTCAAGTTGTCGAAAATTGGCCC
* ***
2423111 GGACAAAATGAGGTATCTACAGCTGCCCCTCTTTGGCCGTTTCTGAGTATCAGGAATGGGGCAAA
66 GGACAAAATGAGGTGTCTACAGCTGCCCCTCTTTGGCCGTTTCTGAGTATCAGGAACAAGGCAAA
* * * *
2423176 AACAAATAGACACCATTTTGTCTGTGGCCGCATGTTGTGACCTTTGAGTGATTAATGCTTCGTCT
131 GACAAATAGACACCATTTTGTCTGCGGCCGCATGTTGTGACCTTTGGGTGATTAATGCTTCGTCG
*
2423241 TGATGAAGAATGTATTGGCGGCGATTCCGATCGAAAAGTGAGTTTGTAGGGTTTGTCCTCCCTAC
196 TGATGAAGAATGTATTGGCGGCGGTTCCGATCGAAAAGTGAGTTTGTAGGGTTTGTCCTCCCTAC
*
2423306 TGGGTTTTGGAATTTTCTAAGGCTTGACCTCCTTAGATAGGTGTAGATTGGTGTAGAGTTTGGAA
261 TAGGTTTTGGAATTTTCTAAGGCTTGACCTCCTTAGATAGGTGTAGATTGGTGTAGAGTTTGGAA
*
2423371 GGGATTTGGAAGGATATGGTCAGTGTTTTGCAATGTGCCACTGTGCAGATGTATCGACACAAAGA
326 GGGATTTGGAAGGATATGGTCAGTGTTTTGCAATGTGCCACTGTGCAGATGTATCGATACAAAGA
* *
2423436 TAAATGTATCAATACAACGTATCGATACATTTAATAATGTATCGATACATTTCCTTGGCAGTAGA
391 TCAATG-ATC-AT---AC--A---ATAC------TAATGTATCGATACATTTCCTTGGCAGTAGC
* ** * *
2423501 TTTGCATTGATACATTGTATCGACACAACATTTATGTACCGATATATTTGCTATTTGTATCGATA
440 TTTGTAGCGATACATTGTATCG-----A-A--TAT-T----ATACA----CTATATGTATCGATA
* *
2423566 CAAATTGTTGAAATTCAAAATGTTTGACCGTTGGGACCTTGTATTGATACATTCGAGAAATGTAT
488 CAAATTGTTGAAATTCAAAATGTTTGACCATTGGGACCTTGTATTGATACATTCTAGAAATGTAT
* * *
2423631 CGATACATTTGGACAAAAATGTAATTTTTTCATGCTTTTTTCCTTCTGAACACTCTATCTCGACT
553 CGATACATTTGGACAAAAATGTGATTTTTTCATCCTTTTTGCCTTCTGAACACTCTATCTCGACT
2423696 AAGGACGATAGGAAATGAA
618 AAGGACGATAGGAAATGAA
* * *
2423715 CTCGT-CCC-CATATGTCCAATCCTCCACCTACTAGCTAGGCCCCAAGTTGTCAAAAATTGGCCC
1 TTCGTCCCCACATATGTCCAATCCTCCACCTACTAGCTAGGCCTCAAGTTGTCGAAAATTGGCCC
*
2423778 GGACAAAATGAGGTGTCTACAGCTGCCCCTTTTTGGCCGTTTCTGAGTATCAGGAACAAGGGCAA
66 GGACAAAATGAGGTGTCTACAGCTGCCCCTCTTTGGCCGTTTCTGAGTATCAGGAACAA-GGCAA
* * *** **
2423843 AGACAAATAGACTCCATTTTCTCCATGGCCGCATGTTGTGACCTTTGGGTGATTAATGCTTCACC
130 AGACAAATAGACACCATTTTGTCTGCGGCCGCATGTTGTGACCTTTGGGTGATTAATGCTTCGTC
* * *
2423908 GTGATGAAGAATATGTTGGCGGCGGTTCCGATCGAAAAGTGAGTTTGTAGGGTTTGCCCTCCCTA
195 GTGATGAAGAATGTATTGGCGGCGGTTCCGATCGAAAAGTGAGTTTGTAGGGTTTGTCCTCCCTA
*
2423973 CTAGGTTTTGGAATTTTCTATGGCTTGACCTCCTTAGATAGGTGTAGATTGGTGTAGAGTTTGGA
260 CTAGGTTTTGGAATTTTCTAAGGCTTGACCTCCTTAGATAGGTGTAGATTGGTGTAGAGTTTGGA
* * *
2424038 AGGGATTTGGAAGGATATGGTCAGTCTTTTACGATGTGCCACTGTGCAGATGTATCGATACAAAG
325 AGGGATTTGGAAGGATATGGTCAGTGTTTTGCAATGTGCCACTGTGCAGATGTATCGATACAAAG
* *
2424103 ATCAATG-T-AT-CAATGC-AATGTCTCGATACATT
390 ATCAATGATCATACAATACTAATGTATCGATACATT
2424135 GAATAATGTA
Statistics
Matches: 2136, Mismatches: 199, Indels: 160
0.86 0.08 0.06
Matches are distributed among these distances:
627 269 0.13
628 91 0.04
629 2 0.00
631 1 0.00
632 1 0.00
637 1 0.00
640 4 0.00
647 50 0.02
648 15 0.01
649 2 0.00
652 1 0.00
654 2 0.00
655 3 0.00
657 1 0.00
658 2 0.00
660 1 0.00
661 3 0.00
662 3 0.00
663 5 0.00
664 7 0.00
666 8 0.00
667 106 0.05
668 1066 0.50
669 460 0.22
670 2 0.00
671 4 0.00
672 1 0.00
673 3 0.00
674 8 0.00
675 9 0.00
676 3 0.00
677 2 0.00
ACGTcount: A:0.27, C:0.18, G:0.22, T:0.32
Consensus pattern (636 bp):
TTCGTCCCCACATATGTCCAATCCTCCACCTACTAGCTAGGCCTCAAGTTGTCGAAAATTGGCCC
GGACAAAATGAGGTGTCTACAGCTGCCCCTCTTTGGCCGTTTCTGAGTATCAGGAACAAGGCAAA
GACAAATAGACACCATTTTGTCTGCGGCCGCATGTTGTGACCTTTGGGTGATTAATGCTTCGTCG
TGATGAAGAATGTATTGGCGGCGGTTCCGATCGAAAAGTGAGTTTGTAGGGTTTGTCCTCCCTAC
TAGGTTTTGGAATTTTCTAAGGCTTGACCTCCTTAGATAGGTGTAGATTGGTGTAGAGTTTGGAA
GGGATTTGGAAGGATATGGTCAGTGTTTTGCAATGTGCCACTGTGCAGATGTATCGATACAAAGA
TCAATGATCATACAATACTAATGTATCGATACATTTCCTTGGCAGTAGCTTTGTAGCGATACATT
GTATCGAATATTATACACTATATGTATCGATACAAATTGTTGAAATTCAAAATGTTTGACCATTG
GGACCTTGTATTGATACATTCTAGAAATGTATCGATACATTTGGACAAAAATGTGATTTTTTCAT
CCTTTTTGCCTTCTGAACACTCTATCTCGACTAAGGACGATAGGAAATGAA
Found at i:2423115 original size:668 final size:669
Alignment explanation
Indices: 2421551--2424154 Score: 4138
Period size: 668 Copynumber: 3.9 Consensus size: 669
2421541 ATAACACTTA
*
2421551 TGTATCGATACAAATTGTTGAAATTCAAAATGTTTGACCATTGGGACCTTGTATTGGTACATTCT
1 TGTATCGATACAAATTGTTGAAATTCAAAATGTTTGACCATTGGGACCTTGTATTGATACATTCT
* *
2421616 AGAAATGTATCGATACATTTGGACAAAAATGTGTTTTTTTCATCCTTTTTGACTTCTGAACACTC
66 AGAAATGTATCGATACATTTGGACAAAAATGTGATTTTTTCATCCTTTTTGCCTTCTGAACACTC
*
2421681 TATCTCGACTAAGGATGATAGGAAATGAATTCGTCCCCACATATGTCCAATCCTCCACCTACTAG
131 TATCTCGACTAAGGACGATAGGAAATGAATTCGTCCCCACATATGTCCAATCCTCCACCTACTAG
* *
2421746 CTAGGCCTCAAGTTGTCGAAAATTGGCCCGGACAAAATGAGGCGTTTACAGCTGCCCCACTTT-G
196 CTAGGCCTCAAGTTGTCGAAAATTGGCCCGGACAAAATGAGGTGTCTACAGCTGCCCCACTTTGG
* * * *
2421810 TCGTTTCTGAGTATCAGGGACAAGGCAAAGACAAATAGATACCATTTTGTCCGCGACCGCATGTT
261 CCGTTTCTGAGTATCAGGAACAAGGCAAAGACAAATAGACACCATTTTGTCCGCGGCCGCATGTT
* * *
2421875 ATGACCTTTGGGTGATTAATGCTTTGCCGTGATGAAGAATGTATTGGCGGTGGTTCCGATCGAAA
326 GTGACCTTTGGGTGATTAATGCTTCGCCGTGATGAAGAATGTATTGGCGGCGGTTCCGATCGAAA
* * * *
2421940 AGTGAGATTGTAGGGTTTTTCCTCCCTACTAGGTTGTGGAATTTTCTAAGGGTTGACCTCCTTAG
391 AGTGAGTTTGTAGGGTTTGTCCTCCCTACTAGGTTTTGGAATTTTCTAAGGCTTGACCTCCTTAG
2422005 ATAGGTGTAGATTGGTGTAGAGTTTGGAAGGGATTTGGAAGGATATGGTCAGTGTTTTGCAATGT
456 ATAGGTGTAGATTGGTGTAGAGTTTGGAAGGGATTTGGAAGGATATGGTCAGTGTTTTGCAATGT
*
2422070 GCCACTATGCAGATGTATCGATACAAAGATCAATGTATCAATACAATGTATCGATACATTGAATA
521 GCCACTGTGCAGATGTATCGATACAAAGATCAATGTATCAATACAATGTATCGATACATTGAATA
* ** * *
2422135 ATGTATCGATACATTTCCTTGGCAGTAACTTTGTAACGATACATTGTATCGATATAACACTTATG
586 ATGTATCGATACATTTCCTTGGCAGTAGCTTTGTATTGATACATTGTATCGACACAACACTTATG
*
2422200 TATCGATACAATTACTATT
651 TATCGATACATTTACTATT
* * *
2422219 TGTATCGATACAAATTGTTGAAATTCAAAATGTTTGACCGTTGGGACCCTGTATGGATACATTCT
1 TGTATCGATACAAATTGTTGAAATTCAAAATGTTTGACCATTGGGACCTTGTATTGATACATTCT
* *
2422284 AGAAATGTATCGATATATTTGGACAAAAATGTGATTTTTTCATCTTTTTTGCCTTCTGAACACTC
66 AGAAATGTATCGATACATTTGGACAAAAATGTGATTTTTTCATCCTTTTTGCCTTCTGAACACTC
* *
2422349 TATCTCGACTAAGGACGATAGGAAATGAATTTGTCCCGACATATGTCCAATCCTCCACCTACTAG
131 TATCTCGACTAAGGACGATAGGAAATGAATTCGTCCCCACATATGTCCAATCCTCCACCTACTAG
*
2422414 CTAGGCCTCAAGTTGTCGAAAATTGGCCCGGACAAAATGAGGTGTCTACAGTTGCCCCACTTTGG
196 CTAGGCCTCAAGTTGTCGAAAATTGGCCCGGACAAAATGAGGTGTCTACAGCTGCCCCACTTTGG
* * ** * *
2422479 CCTTTTCTGAGTATCAAGCCCAAGGCAAAGACAAATAGACACCATTTTGTCTGCGGCCGCATGCT
261 CCGTTTCTGAGTATCAGGAACAAGGCAAAGACAAATAGACACCATTTTGTCCGCGGCCGCATGTT
* * * * *
2422544 GTGACCTTTGGGTGATAAATGCTTCGTCGTGGTGAAGAATGTATTGGTGGCGGTTCTGATCGAAA
326 GTGACCTTTGGGTGATTAATGCTTCGCCGTGATGAAGAATGTATTGGCGGCGGTTCCGATCGAAA
* * * * * * *
2422609 AATGAGTTTATAGGGTCTGTCCTCCTTACTAGGTTTTGGAATTTTATGAGGCTTGACCTCCTAAG
391 AGTGAGTTTGTAGGGTTTGTCCTCCCTACTAGGTTTTGGAATTTTCTAAGGCTTGACCTCCTTAG
* *
2422674 ATAGGTGTATATTGGTGTAGAGTTTGCAAGGGATTTGGAAGGATATGGTCAGTGTTTTGCAATGT
456 ATAGGTGTAGATTGGTGTAGAGTTTGGAAGGGATTTGGAAGGATATGGTCAGTGTTTTGCAATGT
**
2422739 GCCACTGTGCAGATGTATCGATACAAAGATCAATGTATCAATGTAATGTATCGATACATTGAATA
521 GCCACTGTGCAGATGTATCGATACAAAGATCAATGTATCAATACAATGTATCGATACATTGAATA
* * * *
2422804 ATGTAACGATACATTTCCTTGGTAGTAGCTTTGTATTGATACATTGTGTCAACACAACACTTATG
586 ATGTATCGATACATTTCCTTGGCAGTAGCTTTGTATTGATACATTGTATCGACACAACACTTATG
*
2422869 TATCGATACATTTACTGTT
651 TATCGATACATTTACTATT
* *
2422888 TGTATTGATACAAATTGTTGAAATTCAAAAT-TTTGACCATTGGGACCTTGTATCGATACATTCT
1 TGTATCGATACAAATTGTTGAAATTCAAAATGTTTGACCATTGGGACCTTGTATTGATACATTCT
*
2422952 AGAAATGTATCGATACATTTGGACAAAAATGTGATTTTTTTATCCTTTTTGCCTTCTGAACACTC
66 AGAAATGTATCGATACATTTGGACAAAAATGTGATTTTTTCATCCTTTTTGCCTTCTGAACACTC
*
2423017 TATCTC-AGCTAAGGACGATAGTAAATGAATTCGTCCCCACATATGTCCAATCCTCCACCTACTA
131 TATCTCGA-CTAAGGACGATAGGAAATGAATTCGTCCCCACATATGTCCAATCCTCCACCTACTA
* ** * *
2423081 GCTAGGCCTCAAGTTGCCGAAAATTGATCCGGACAAAATGAGGTATCTACAGCTGCCCCTCTTTG
195 GCTAGGCCTCAAGTTGTCGAAAATTGGCCCGGACAAAATGAGGTGTCTACAGCTGCCCCACTTTG
*** * * *
2423146 GCCGTTTCTGAGTATCAGGAATGGGGCAAAAACAAATAGACACCATTTTGTCTGTGGCCGCATGT
260 GCCGTTTCTGAGTATCAGGAACAAGGCAAAGACAAATAGACACCATTTTGTCCGCGGCCGCATGT
* * * *
2423211 TGTGACCTTTGAGTGATTAATGCTTCGTCTTGATGAAGAATGTATTGGCGGCGATTCCGATCGAA
325 TGTGACCTTTGGGTGATTAATGCTTCGCCGTGATGAAGAATGTATTGGCGGCGGTTCCGATCGAA
*
2423276 AAGTGAGTTTGTAGGGTTTGTCCTCCCTACTGGGTTTTGGAATTTTCTAAGGCTTGACCTCCTTA
390 AAGTGAGTTTGTAGGGTTTGTCCTCCCTACTAGGTTTTGGAATTTTCTAAGGCTTGACCTCCTTA
2423341 GATAGGTGTAGATTGGTGTAGAGTTTGGAAGGGATTTGGAAGGATATGGTCAGTGTTTTGCAATG
455 GATAGGTGTAGATTGGTGTAGAGTTTGGAAGGGATTTGGAAGGATATGGTCAGTGTTTTGCAATG
* * * *
2423406 TGCCACTGTGCAGATGTATCGACACAAAGATAAATGTATCAATACAACGTATCGATACATTTAAT
520 TGCCACTGTGCAGATGTATCGATACAAAGATCAATGTATCAATACAATGTATCGATACATTGAAT
* * *
2423471 AATGTATCGATACATTTCCTTGGCAGTAGATTTGCATTGATACATTGTATCGACACAACATTTAT
585 AATGTATCGATACATTTCCTTGGCAGTAGCTTTGTATTGATACATTGTATCGACACAACACTTAT
* * *
2423536 GTACCGATATATTTGCTATT
650 GTATCGATACATTTACTATT
* *
2423556 TGTATCGATACAAATTGTTGAAATTCAAAATGTTTGACCGTTGGGACCTTGTATTGATACATTCG
1 TGTATCGATACAAATTGTTGAAATTCAAAATGTTTGACCATTGGGACCTTGTATTGATACATTCT
* * *
2423621 AGAAATGTATCGATACATTTGGACAAAAATGTAATTTTTTCATGCTTTTTTCCTTCTGAACACTC
66 AGAAATGTATCGATACATTTGGACAAAAATGTGATTTTTTCATCCTTTTTGCCTTCTGAACACTC
*
2423686 TATCTCGACTAAGGACGATAGGAAATGAACTCGT-CCC-CATATGTCCAATCCTCCACCTACTAG
131 TATCTCGACTAAGGACGATAGGAAATGAATTCGTCCCCACATATGTCCAATCCTCCACCTACTAG
* * **
2423749 CTAGGCCCCAAGTTGTCAAAAATTGGCCCGGACAAAATGAGGTGTCTACAGCTGCCCCTTTTTGG
196 CTAGGCCTCAAGTTGTCGAAAATTGGCCCGGACAAAATGAGGTGTCTACAGCTGCCCCACTTTGG
* * **
2423814 CCGTTTCTGAGTATCAGGAACAAGGGCAAAGACAAATAGACTCCATTTTCTCCATGGCCGCATGT
261 CCGTTTCTGAGTATCAGGAACAA-GGCAAAGACAAATAGACACCATTTTGTCCGCGGCCGCATGT
* * *
2423879 TGTGACCTTTGGGTGATTAATGCTTCACCGTGATGAAGAATATGTTGGCGGCGGTTCCGATCGAA
325 TGTGACCTTTGGGTGATTAATGCTTCGCCGTGATGAAGAATGTATTGGCGGCGGTTCCGATCGAA
* *
2423944 AAGTGAGTTTGTAGGGTTTGCCCTCCCTACTAGGTTTTGGAATTTTCTATGGCTTGACCTCCTTA
390 AAGTGAGTTTGTAGGGTTTGTCCTCCCTACTAGGTTTTGGAATTTTCTAAGGCTTGACCTCCTTA
* * *
2424009 GATAGGTGTAGATTGGTGTAGAGTTTGGAAGGGATTTGGAAGGATATGGTCAGTCTTTTACGATG
455 GATAGGTGTAGATTGGTGTAGAGTTTGGAAGGGATTTGGAAGGATATGGTCAGTGTTTTGCAATG
* *
2424074 TGCCACTGTGCAGATGTATCGATACAAAGATCAATGTATCAATGCAATGTCTCGATACATTGAAT
520 TGCCACTGTGCAGATGTATCGATACAAAGATCAATGTATCAATACAATGTATCGATACATTGAAT
2424139 AATGTATCGATACATT
585 AATGTATCGATACATT
2424155 ATATAATGTA
Statistics
Matches: 1769, Mismatches: 162, Indels: 10
0.91 0.08 0.01
Matches are distributed among these distances:
667 105 0.06
668 1146 0.65
669 517 0.29
670 1 0.00
ACGTcount: A:0.28, C:0.18, G:0.22, T:0.33
Consensus pattern (669 bp):
TGTATCGATACAAATTGTTGAAATTCAAAATGTTTGACCATTGGGACCTTGTATTGATACATTCT
AGAAATGTATCGATACATTTGGACAAAAATGTGATTTTTTCATCCTTTTTGCCTTCTGAACACTC
TATCTCGACTAAGGACGATAGGAAATGAATTCGTCCCCACATATGTCCAATCCTCCACCTACTAG
CTAGGCCTCAAGTTGTCGAAAATTGGCCCGGACAAAATGAGGTGTCTACAGCTGCCCCACTTTGG
CCGTTTCTGAGTATCAGGAACAAGGCAAAGACAAATAGACACCATTTTGTCCGCGGCCGCATGTT
GTGACCTTTGGGTGATTAATGCTTCGCCGTGATGAAGAATGTATTGGCGGCGGTTCCGATCGAAA
AGTGAGTTTGTAGGGTTTGTCCTCCCTACTAGGTTTTGGAATTTTCTAAGGCTTGACCTCCTTAG
ATAGGTGTAGATTGGTGTAGAGTTTGGAAGGGATTTGGAAGGATATGGTCAGTGTTTTGCAATGT
GCCACTGTGCAGATGTATCGATACAAAGATCAATGTATCAATACAATGTATCGATACATTGAATA
ATGTATCGATACATTTCCTTGGCAGTAGCTTTGTATTGATACATTGTATCGACACAACACTTATG
TATCGATACATTTACTATT
Found at i:2424148 original size:20 final size:20
Alignment explanation
Indices: 2424119--2424174 Score: 87
Period size: 20 Copynumber: 2.8 Consensus size: 20
2424109 GTATCAATGC
*
2424119 AATGTCTCGATACATTGA-AT
1 AATGTATCGATACATT-ATAT
2424139 AATGTATCGATACATTATAT
1 AATGTATCGATACATTATAT
2424159 AATGTATCGATACATT
1 AATGTATCGATACATT
2424175 TCCTTGGCAG
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
19 1 0.03
20 33 0.97
ACGTcount: A:0.38, C:0.12, G:0.12, T:0.38
Consensus pattern (20 bp):
AATGTATCGATACATTATAT
Found at i:2425405 original size:19 final size:18
Alignment explanation
Indices: 2425375--2425430 Score: 58
Period size: 21 Copynumber: 2.9 Consensus size: 18
2425365 TTGGCAGTCG
*
2425375 CTTTGTAGCGATACAACA
1 CTTTGTATCGATACAACA
*
2425393 CTTATGTATCGATACATTTACT
1 CTT-TGTATCGATACA---ACA
2425415 CTTTGTATCGATACAA
1 CTTTGTATCGATACAA
2425431 ATTGTTGAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 8
0.76 0.05 0.19
Matches are distributed among these distances:
18 4 0.12
19 11 0.34
21 12 0.38
22 5 0.16
ACGTcount: A:0.30, C:0.20, G:0.12, T:0.38
Consensus pattern (18 bp):
CTTTGTATCGATACAACA
Found at i:2426078 original size:21 final size:19
Alignment explanation
Indices: 2426031--2426085 Score: 56
Period size: 19 Copynumber: 2.8 Consensus size: 19
2426021 TGGTAGTAGC
*
2426031 TTTGTAGCGATACAACACT
1 TTTGTATCGATACAACACT
* *
2426050 TATGTATCGATACATTCACT
1 TTTGTATCGATACA-ACACT
*
2426070 GTTTGTATCAATACAA
1 -TTTGTATCGATACAA
2426086 ATTGTTGAAA
Statistics
Matches: 28, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
19 12 0.43
20 4 0.14
21 12 0.43
ACGTcount: A:0.33, C:0.18, G:0.13, T:0.36
Consensus pattern (19 bp):
TTTGTATCGATACAACACT
Found at i:2427828 original size:669 final size:669
Alignment explanation
Indices: 2424225--2428825 Score: 3892
Period size: 689 Copynumber: 6.8 Consensus size: 669
2424215 AACACTTATG
* * *
2424225 TATCTCGGCTAAGGACGATAGGAAATGAATTTGTCCCCACATATGTCCAATCCTCCACCTACTAG
1 TATCTCGACTAAGGACGATAGGAAATGAATTCGTCCCCACATATGTCCAATCTTCCACCTACTAG
* * * ** * ****
2424290 CTAGGCCTCAAATTGTCGAAAATTGGTGCGGAGAAAATGAGGTACCCACAGCTGCCCCTCTTTGG
66 CCAGGCCTCAAGTTGTCGAAAACTGGCCCGGACAAAATGAGGTGTTTACAGCTGCCCCTCTTTGG
* * * * *
2424355 CCGTTTCTGAGTATCAGGAAC-GGGCAAAAACAAATAGA-CCTCATTTTGTCCATGGCCGCATGT
131 CTGTTTCTGAGTATCAGGAACAAGGCAAAGACAAATAGACCCT-ATTTTGTCCGTGGCCACATGT
* * * * **
2424418 TGTGACCTTTGAGTGATTAATGCTTCACCGTGATGAATAATGTATTGGCGGCAATTCCGATCGAA
195 TGTGACCTTTGGGTGATTAACGCTTCACCGTGATGAAGAATATATTGGCGGCGGTTCCGATCGAA
*
2424483 AAGTGAGTTTGTAGGGTTTGTCCTCCCTGCTAGGTTTTGGAATTTTCTAAGGCTTGACCTCCTTA
260 AAGTGAGTTTGTAGGGTTTGTCCTCCCTACTAGGTTTTGGAATTTTCTAAGGCTTGACCTCCTTA
** * *
2424548 GATAGGTGTAGATTGGTGTAGAGTTTGGAAGGGATTTTAAAGGATATGGT-AGTGTTTTACGATG
325 GATAGGTGTAGATTGGTGTAGAGTTTGGAAGGGATTTGGAAGGATATGGTCAGTGTTTTGCAATG
* **
2424612 TGCCACTGTGCAGATGTATCGATACAAAGATAAATGTATCAATACAACGTATCGATACATTGAAT
390 TGCCACTGTGCAGATGTATCGATACAAAGATCAATGTATCAATACAATATATCGATACATTGAAT
* * ** *
2424677 AATGTATCGATACATTTCCTTGGCAGTAGCTTTATAGCGATACATTATATCGATACAACACTTAT
455 AATGTATCGATACATTTCCTAGGCAGTAGCTTTGTATTGATACATTGTATCGATACAACACTTAT
* * *
2424742 GTATCGATACATTTACTATTTGGATCGATACAAATTGTTGAAATTCAAAACGTTTGACCATTGGG
520 GTATCGATACATTTACTATTTGTATCGATACAAATTGTTGAAATTCAAAATGTTTGACCGTTGGG
** * * * * * *
2424807 ACCCGGTATTGGTACATTCGAGAAATGTATAGATACATTTGGACAAAAATGTAATTTTTTCATCC
585 ACCTTGTATCGATACATTCTAGAATTGTATCGATACATTTGGACAAAAATGTGATTTTTTCATCC
*
2424872 TTTTTTCCTTCTAAACACTC
650 TTTTTTCCTTCTGAACACTC
* * *
2424892 TATCTCGACTAAGGACGATAGGAAATGAACTCGTCCACACATATGTCCAATCCTCCACCTACTAG
1 TATCTCGACTAAGGACGATAGGAAATGAATTCGTCCCCACATATGTCCAATCTTCCACCTACTAG
* * * * * *
2424957 CTAGGCCTTAAGTTGTCGAAAATTGGCCCGGACAAAATGAGGTGTCTACAGCTACCTCTCTTTGG
66 CCAGGCCTCAAGTTGTCGAAAACTGGCCCGGACAAAATGAGGTGTTTACAGCTGCCCCTCTTTGG
* * * * * * * * *
2425022 CCGTTTCTGAGTATTACGAACATGGCAAAGATAAATAGACCCCATTTTGTCCGCGGACGCATGTT
131 CTGTTTCTGAGTATCAGGAACAAGGCAAAGACAAATAGACCCTATTTTGTCCGTGGCCACATGTT
* ** *
2425087 GTGACCTTTGGGTGATTAACGCTTCGCCGTGATGAAGAATATATTGGCAACGGTTCGGATCGAAA
196 GTGACCTTTGGGTGATTAACGCTTCACCGTGATGAAGAATATATTGGCGGCGGTTCCGATCGAAA
* * *
2425152 AGTGAGTTCGTTGGGTTTGTCCTCCCTACTAGGTTTTAGAATTTTCTAAGGCTTGACCTCCTTAG
261 AGTGAGTTTGTAGGGTTTGTCCTCCCTACTAGGTTTTGGAATTTTCTAAGGCTTGACCTCCTTAG
*
2425217 ATAGGTGTAGATTGGTGTAGAGTTTGGAAGGGATTTGGAAGGATATGGTTAGTGTTTTGCAATGT
326 ATAGGTGTAGATTGGTGTAGAGTTTGGAAGGGATTTGGAAGGATATGGTCAGTGTTTTGCAATGT
* * *
2425282 GCCACTATGCAGATGTATCGATACAAAGATCAATGTATCAATACAATGTATCGATACATTGGATA
391 GCCACTGTGCAGATGTATCGATACAAAGATCAATGTATCAATACAATATATCGATACATTGAATA
* *
2425347 ATGTATCGATACATTTCCTTGGCAGTCGC----T-TTG-T--A--G---CGATACAACACTTATG
456 ATGTATCGATACATTTCCTAGGCAGTAGCTTTGTATTGATACATTGTATCGATACAACACTTATG
* *
2425399 TATCGATACATTTACTCTTTGTATCGATACAAATTGTTGAAATTCAAAAGGTTTGACCGTTGGGA
521 TATCGATACATTTACTATTTGTATCGATACAAATTGTTGAAATTCAAAATGTTTGACCGTTGGGA
* * *
2425464 CCTTGTATCGATGCATTCTTGAAATGTATCGATACATTTGGACAAAAATGTGATTTTTTCATCCT
586 CCTTGTATCGATACATTCTAGAATTGTATCGATACATTTGGACAAAAATGTGATTTTTTCATCCT
*
2425529 TTTTTCCTTCTGACCACTC
651 TTTTTCCTTCTGAACACTC
* * * *
2425548 TATCTCGGCTAAGGATGATAGAAAATGAATTCGTCCCCACATATGTCCAATCCTCCACCTACTAG
1 TATCTCGACTAAGGACGATAGGAAATGAATTCGTCCCCACATATGTCCAATCTTCCACCTACTAG
** * * *
2425613 TTAGGCCTCAAGTTGTCGAAAATTGGCCCGGACAAAATGAGGTGTCTACAGCTACCCCTCTTTGG
66 CCAGGCCTCAAGTTGTCGAAAACTGGCCCGGACAAAATGAGGTGTTTACAGCTGCCCCTCTTTGG
* ** * * * *
2425678 CCGTTTCTGAGTATCAGGAGTAGGGCAAAGACAAATAGACTCC-ATTTTGTCTGCGGCCGCATGT
131 CTGTTTCTGAGTATCAGGAACAAGGCAAAGACAAATAGAC-CCTATTTTGTCCGTGGCCACATGT
* * *
2425742 TGTGACCTTTGGGTGATTAATGCTTCGCCGTGATGAAGAATATATTGGCGGCGGTTTCGATCG-A
195 TGTGACCTTTGGGTGATTAACGCTTCACCGTGATGAAGAATATATTGGCGGCGGTTCCGATCGAA
*
2425806 AAGTGAGTTTGTAGGGTTTGTCCTCCCTACTAGGTTTTGGAATTTTCTAAGGCTTGACCTCCGTA
260 AAGTGAGTTTGTAGGGTTTGTCCTCCCTACTAGGTTTTGGAATTTTCTAAGGCTTGACCTCCTTA
*
2425871 GATAGGTGTAGATTGGTGTAGAGTTTGGAAGGGATTTGGAAGGATATGGTTAGTGTTTTGCAATG
325 GATAGGTGTAGATTGGTGTAGAGTTTGGAAGGGATTTGGAAGGATATGGTCAGTGTTTTGCAATG
* *
2425936 TGCCACTGTGCAGATGTGTCGATACAAAGATCAATGTATCAATACAATATATCGTTACATT-AGA
390 TGCCACTGTGCAGATGTATCGATACAAAGATCAATGTATCAATACAATATATCGATACATTGA-A
* *
2426000 TAATGTATCGATACATTTCCTTGGTAGTAGC----T-TTG-T--A--G---CGATACAACACTTA
454 TAATGTATCGATACATTTCCTAGGCAGTAGCTTTGTATTGATACATTGTATCGATACAACACTTA
* * *
2426052 TGTATCGATACATTCACTGTTTGTATCAATACAAATTGTTGAAATTCAAAATGTTTGACCGTT-G
519 TGTATCGATACATTTACTATTTGTATCGATACAAATTGTTGAAATTCAAAATGTTTGACCGTTGG
*
2426116 GACCTTGTATCGATAACA-TCTAGAA-TGTATCGATACATTTGGACAAAAAAGTGATTTTTTCAT
584 GACCTTGTATCGAT-ACATTCTAGAATTGTATCGATACATTTGGACAAAAATGTGATTTTTTCAT
*
2426179 CCTTTTTGCCTTCTGAACACTC
648 CCTTTTTTCCTTCTGAACACTC
* * * *
2426201 TATCTCGACTAAGGACGATAGGAAATGAATTCGTCCCCACATATGTTCGATCCTCCACCTACTAA
1 TATCTCGACTAAGGACGATAGGAAATGAATTCGTCCCCACATATGTCCAATCTTCCACCTACTAG
* * * * *
2426266 CTAGGCCTCAAGTTGTCGAAAATTGGCCCGGACAAAATGAGGCGTCTACAGTTGCCCCTCTTTGG
66 CCAGGCCTCAAGTTGTCGAAAACTGGCCCGGACAAAATGAGGTGTTTACAGCTGCCCCTCTTTGG
* * * * *
2426331 CCT-TTTCTGAGTATCAGGAACAGGGCAAAGACAAACAGACACC-GTTTTGTCCGTAGCCGCATG
131 -CTGTTTCTGAGTATCAGGAACAAGGCAAAGACAAATAGAC-CCTATTTTGTCCGTGGCCACATG
* * * * *
2426394 TTGTGACCTTTAGGTAATTAACGCTTCGCCGTGATGAAGAATGTATTGGCGGCGATTCCGATCGA
194 TTGTGACCTTTGGGTGATTAACGCTTCACCGTGATGAAGAATATATTGGCGGCGGTTCCGATCGA
* *
2426459 AAAATGAGTTTGTAGGGTTTGTCCTCCCTACTAGGTTTTGGAATTTTATAAGGCTTGACCTCCTT
259 AAAGTGAGTTTGTAGGGTTTGTCCTCCCTACTAGGTTTTGGAATTTTCTAAGGCTTGACCTCCTT
*
2426524 AGATAGGTGTAGATTGGTGTAGAGTTTGGAAGGGATTTGGAAGGATATGGTCAGTGTTTTGGATA
324 AGATAGGTGTAGATTGGTGTAGAGTTTGGAAGGGATTTGGAAGGATATGGTCAGTGTTTTGCA-A
* * * * **
2426589 T-TGGCACTGTGCAGATGTGTCGATATAAAGATCAATGTATCAATATAATATATCGATACATTTC
388 TGTGCCACTGTGCAGATGTATCGATACAAAGATCAATGTATCAATACAATATATCGATACATTGA
* * ** * * ** * *
2426653 CT--TGGTA--G-TAGC-TTT-GTAGCGATACAACAG-TTATCTATCGATACAAAG-ATCAATGT
453 ATAAT-GTATCGATA-CATTTCCTAG-G---CAGTAGCTT-TGTATTGATACATTGTATCGAT-A
* * * * * * * * ** * ***
2426709 C-TCAATGCAATGTATCGATACATTGAATA-ATGTATCGATAC-ATTTCCTTGGCAGT-AGCTTT
510 CAACACT--TATGTATCGATACATTTACTATTTGTATCGATACAAATT-GTTGAAATTCA-AAAT
* *** *
2426770 GTGTTGATACATTATATCGATACAACACTTATGTATCGATACATT-TACTG-TTTGTATCGATAT
571 GT-TTG--AC-------CGTTGGGAC-C-T-TGTATCGATACATTCTA--GAATTGTATCGATA-
* * * ** *** * * *
2426833 AATTGTTGAAATTCAAAATGTTTGACCATTAGGA-CCTTGTATAGATACATTCTAGAA-A-TG
620 CATT-TGGACA---AAAATG--TGA-TTTTTTCATCCTT-T-T---TTCCTTCT-GAACACTC
*** ** * * ** ** * * * * **
2426893 TATCGATACATTTGGTC-A-A--AAATGTGATTTTTTCATC-CTTTTTTCC-TTC-TGAACACT-
1 TATCTCGAC-TAAGGACGATAGGAAA--TGAATTCGTCCCCACATATGTCCAATCTTCCAC-CTA
* * * * *** ** * * ** * *
2426950 CTATCTC--GACT-AAG--GACGATAGGAAATGAATTCGTCCCCACAT-A--TGTCCAAACCTGC
62 CTAGC-CAGGCCTCAAGTTGTCGA-A--AACTG-GCCCG-GACAAAATGAGGTGTTTACAGCTGC
* * * ** * ** **
2427007 ACCTACCAGCTAGGCCTTAAGTTAT-TGAAAATTGGCCCA-GACAAAAGG-AGGTGTCTACAGCT
121 CCCT--C--TTTGG-C-T--GTT-TCTGAGTA-T----CAGGA-ACAAGGCA-AAG---ACAAAT
* * * ** * ** * * * * *
2427069 -GCCCCTCTTTGGT-CGTTTCTA-A-GTATCAAGAAC--AGGGCAAAGACAAATAGACACCATTT
167 AGACCCTATTTTGTCCGTGGCCACATGT-T-GTGACCTTTGGG---TG---ATTA-AC-GC---T
** * ** ** * * *
2427128 TGTCCGCGACCACATGTTGTGACCATTGG-GTGATTAATGCTTCGCCGTGAT-GAAGAA-T-A-T
219 TCACCGTGATGA-A-G-AAT-A-TATTGGCG-G-----CGGTT--CC--GATCGAA-AAGTGAGT
** * *** * * * * * * * * * *
2427188 ATTGGCGGCG-GT-TCCGATCGA-AAAG---T-G-AGTTTGTAGGGTTTGTCCTCCCTA-CTAGG
268 -TTGTAGG-GTTTGTCCTCCCTACTAGGTTTTGGAATTTTCTAAGGCTTGACCTCCTTAGATAGG
* * ** * * * * * * * *
2427244 TTTTGGAATTTTCTAAGGCTTGACCTCCTTAGATAGGTGTAGATTGG-TGTAGAGTTTGG-AAGG
331 -TGTAG-A-TTGGT---G-TAGA-GT--TTGGA-AGG-G-A-TTTGGAAG--GA-TATGGTCAGT
* * * * *
2427307 GATTTGGAAGGATACGATCAGTGTTTTGCA-ATGTGCCACTGTCCAGATGCATCGATAGAAAGAT
379 GTTTTGCAATG-T--G-CCACTG---TGCAGATGT---A---T-C-GAT--A-C-----AAAGAT
* * *
2427371 TAATGTATCAATGCAATGTATCGATACATTGAATAATGTATCGATACATTTCCTAGGCAGTAGCT
421 CAATGTATCAATACAATATATCGATACATTGAATAATGTATCGATACATTTCCTAGGCAGTAGCT
*
2427436 TTGTATTGATGCATTGTATCGATACAACACTTATGTATCGATACATTTACTATTTGTATCGATAC
486 TTGTATTGATACATTGTATCGATACAACACTTATGTATCGATACATTTACTATTTGTATCGATAC
*
2427501 AAATTGTTGAAATTCAAAATGTTTGACTGTTGGGACCTTGTATCGATACATTCTAGAATTGTATC
551 AAATTGTTGAAATTCAAAATGTTTGACCGTTGGGACCTTGTATCGATACATTCTAGAATTGTATC
* * *
2427566 GATACATTTGGACCAAAATGTGATTTTTTCATCCTTTTTGCCTTCTAAACACTC
616 GATACATTTGGACAAAAATGTGATTTTTTCATCCTTTTTTCCTTCTGAACACTC
*
2427620 TATCTC-AGCTAAGGACGATAGTAAATGAATTCGTCCCCACATATGTCCAATCTTCCACCTACTA
1 TATCTCGA-CTAAGGACGATAGGAAATGAATTCGTCCCCACATATGTCCAATCTTCCACCTACTA
2427684 GCCAGGCCTCAAGTTGTCGAAAACTGGCCCGGACAAAATGAGGTGTTTACAGCTGCCCCTCTTTG
65 GCCAGGCCTCAAGTTGTCGAAAACTGGCCCGGACAAAATGAGGTGTTTACAGCTGCCCCTCTTTG
2427749 GCTGTTTCTGAGTATCAGGAACAAGGCAAAGACAAATAGACCCTATTTTGTCCGTGGCCACATGT
130 GCTGTTTCTGAGTATCAGGAACAAGGCAAAGACAAATAGACCCTATTTTGTCCGTGGCCACATGT
2427814 TGTGACCTTTGGGTGATTAACGCTTCACCGTGATGAAGAATATATTGGCGGCGGTTCCGATCGAA
195 TGTGACCTTTGGGTGATTAACGCTTCACCGTGATGAAGAATATATTGGCGGCGGTTCCGATCGAA
*
2427879 AAGTGAGTTTGTAGGGTTTGTCCTCCTTACTAGGTTTTGGAATTTTCTAAGGCTTGACCTCCTTA
260 AAGTGAGTTTGTAGGGTTTGTCCTCCCTACTAGGTTTTGGAATTTTCTAAGGCTTGACCTCCTTA
* *
2427944 TATAGGTGTAGATTGGTGTAGAGTTTGGAAGGGATTTGGAAGGATATGGTCAGTGTTTTGCAATT
325 GATAGGTGTAGATTGGTGTAGAGTTTGGAAGGGATTTGGAAGGATATGGTCAGTGTTTTGCAATG
*
2428009 TGCCACTGTGCAGATGTATCGATACAAAGATCAATGTATCAATACAATATATCGATACATT--AC
390 TGCCACTGTGCAGATGTATCGATACAAAGATCAATGTATCAATACAATATATCGATACATTGAAT
* *** * * ** * * * *
2428072 AATATATCGATACATTGAATAATGTATCGATA-CATTT-CCTTGTTA-ATAGTTTTG-TAGCGAT
455 AATGTATCGATACATTTCCT-AGGCA--G-TAGC-TTTGTATTGATACATTGTATCGATA-C-A-
*
2428133 ACA-TTA--TATCGATACATTTACTATTTGTATCAATACAAATTGTTGAAATTCAAAATGTTTGA
512 ACACTTATGTATCGATACATTTACTATTTGTATCGATACAAATTGTTGAAATTCAAAATGTTTGA
* *
2428195 CCGTTGGGACCCTGTATCGATACATGCTAGAAATGTGTCGATACATTCTAGATATGTATCGGTAT
577 CCGTTGGGACCTTGTATCGATACATTCTAG-AA--T-T-G-T--A-TC--G--A--TA-C-----
*
2428260 ATTTGGACAAAAATGTGATTTTTTCATCCTTTTTTCCTTCTGAATACTC
621 ATTTGGACAAAAATGTGATTTTTTCATCCTTTTTTCCTTCTGAACACTC
* *
2428309 TATCTCGACTAAGAATGATAGGAAATGAATTCGTCCCCACATATGTCCAATCTTCCACCTACTAG
1 TATCTCGACTAAGGACGATAGGAAATGAATTCGTCCCCACATATGTCCAATCTTCCACCTACTAG
2428374 CCAGGCCTCAAGTTGTCGAAAACTGGCCCGGACAAAATGAGGTGTTTACAGCTGCCCCTCTTTGG
66 CCAGGCCTCAAGTTGTCGAAAACTGGCCCGGACAAAATGAGGTGTTTACAGCTGCCCCTCTTTGG
2428439 CTGTTTCTGAGTATCAGGAACAAGGCAAAGACAAATAGACCCTATTTTGTCCGTGGCCACATGTT
131 CTGTTTCTGAGTATCAGGAACAAGGCAAAGACAAATAGACCCTATTTTGTCCGTGGCCACATGTT
*
2428504 GTGACCTTTGGGTGATTAACGCTTCACCGTGATGAAGAATATATTGGCGGCGGTTCTGATCGAAA
196 GTGACCTTTGGGTGATTAACGCTTCACCGTGATGAAGAATATATTGGCGGCGGTTCCGATCGAAA
*
2428569 AATGAGTTTGTAGGGTTTGTCCTCCCTACTAGGTTTTGGAATTTTCTAAGGCTTGACCTCCTTAG
261 AGTGAGTTTGTAGGGTTTGTCCTCCCTACTAGGTTTTGGAATTTTCTAAGGCTTGACCTCCTTAG
* * * * *
2428634 ATAGGTGTAGATTGGTGAAGTGTGTGGAAGGGATTTTGAAGTATATGGTCAGTGTTTTGCAATGT
326 ATAGGTGTAGATTGGTGTAGAGTTTGGAAGGGATTTGGAAGGATATGGTCAGTGTTTTGCAATGT
* * *
2428699 GCCACTGTGCAGATGTATGGATACAAAGATCAATATATCAATACAATATATCGATACATTAAATA
391 GCCACTGTGCAGATGTATCGATACAAAGATCAATGTATCAATACAATATATCGATACATTGAATA
* * * **
2428764 ATTTATCAATACATTTCCTTGGCAGTAGCTTTGTAGCGATACATTGTATCGATACAACACTT
456 ATGTATCGATACATTTCCTAGGCAGTAGCTTTGTATTGATACATTGTATCGATACAACACTT
2428826 TTGTTTTGAT
Statistics
Matches: 3173, Mismatches: 495, Indels: 511
0.76 0.12 0.12
Matches are distributed among these distances:
649 2 0.00
650 6 0.00
651 2 0.00
652 1 0.00
653 293 0.09
654 203 0.06
655 298 0.09
656 383 0.12
657 3 0.00
658 2 0.00
659 1 0.00
661 2 0.00
663 2 0.00
664 1 0.00
665 11 0.00
666 19 0.01
667 172 0.05
668 283 0.09
669 148 0.05
670 10 0.00
671 9 0.00
672 1 0.00
673 1 0.00
674 2 0.00
675 1 0.00
676 4 0.00
677 7 0.00
678 2 0.00
679 8 0.00
680 10 0.00
681 12 0.00
682 4 0.00
683 6 0.00
684 9 0.00
685 5 0.00
686 19 0.01
687 19 0.01
688 27 0.01
689 500 0.16
690 21 0.01
691 37 0.01
692 12 0.00
693 13 0.00
694 10 0.00
695 5 0.00
696 9 0.00
697 5 0.00
698 17 0.01
699 17 0.01
700 15 0.00
701 7 0.00
702 3 0.00
703 4 0.00
704 5 0.00
705 29 0.01
706 7 0.00
707 1 0.00
708 1 0.00
709 9 0.00
710 9 0.00
711 1 0.00
712 1 0.00
713 6 0.00
714 29 0.01
715 5 0.00
716 4 0.00
717 4 0.00
718 11 0.00
719 14 0.00
720 19 0.01
721 18 0.01
722 5 0.00
723 9 0.00
724 5 0.00
725 10 0.00
726 14 0.00
727 13 0.00
728 21 0.01
729 15 0.00
730 16 0.01
731 19 0.01
732 11 0.00
733 21 0.01
734 5 0.00
735 8 0.00
736 3 0.00
737 4 0.00
738 25 0.01
739 3 0.00
740 2 0.00
741 5 0.00
742 3 0.00
744 1 0.00
748 2 0.00
750 54 0.02
751 37 0.01
752 15 0.00
753 2 0.00
754 6 0.00
755 3 0.00
ACGTcount: A:0.28, C:0.18, G:0.21, T:0.33
Consensus pattern (669 bp):
TATCTCGACTAAGGACGATAGGAAATGAATTCGTCCCCACATATGTCCAATCTTCCACCTACTAG
CCAGGCCTCAAGTTGTCGAAAACTGGCCCGGACAAAATGAGGTGTTTACAGCTGCCCCTCTTTGG
CTGTTTCTGAGTATCAGGAACAAGGCAAAGACAAATAGACCCTATTTTGTCCGTGGCCACATGTT
GTGACCTTTGGGTGATTAACGCTTCACCGTGATGAAGAATATATTGGCGGCGGTTCCGATCGAAA
AGTGAGTTTGTAGGGTTTGTCCTCCCTACTAGGTTTTGGAATTTTCTAAGGCTTGACCTCCTTAG
ATAGGTGTAGATTGGTGTAGAGTTTGGAAGGGATTTGGAAGGATATGGTCAGTGTTTTGCAATGT
GCCACTGTGCAGATGTATCGATACAAAGATCAATGTATCAATACAATATATCGATACATTGAATA
ATGTATCGATACATTTCCTAGGCAGTAGCTTTGTATTGATACATTGTATCGATACAACACTTATG
TATCGATACATTTACTATTTGTATCGATACAAATTGTTGAAATTCAAAATGTTTGACCGTTGGGA
CCTTGTATCGATACATTCTAGAATTGTATCGATACATTTGGACAAAAATGTGATTTTTTCATCCT
TTTTTCCTTCTGAACACTC
Found at i:2428101 original size:20 final size:18
Alignment explanation
Indices: 2428051--2428107 Score: 78
Period size: 18 Copynumber: 3.1 Consensus size: 18
2428041 AATGTATCAA
2428051 TACAATATATCGATACAT
1 TACAATATATCGATACAT
2428069 TACAATATATCGATACAT
1 TACAATATATCGATACAT
* *
2428087 TGAATAATGTATCGATACAT
1 T--ACAATATATCGATACAT
2428107 T
1 T
2428108 TCCTTGTTAA
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
18 19 0.54
20 16 0.46
ACGTcount: A:0.42, C:0.14, G:0.09, T:0.35
Consensus pattern (18 bp):
TACAATATATCGATACAT
Found at i:2428237 original size:21 final size:21
Alignment explanation
Indices: 2428211--2428251 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
2428201 GGACCCTGTA
2428211 TCGATACATGCTAGAAATGTG
1 TCGATACATGCTAGAAATGTG
* *
2428232 TCGATACATTCTAGATATGT
1 TCGATACATGCTAGAAATGT
2428252 ATCGGTATAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.32, C:0.15, G:0.20, T:0.34
Consensus pattern (21 bp):
TCGATACATGCTAGAAATGTG
Found at i:2429249 original size:13 final size:13
Alignment explanation
Indices: 2429231--2429256 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
2429221 ACACCAAAGT
2429231 ATGTATCGATACA
1 ATGTATCGATACA
2429244 ATGTATCGATACA
1 ATGTATCGATACA
2429257 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:2435421 original size:13 final size:13
Alignment explanation
Indices: 2435403--2435441 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
2435393 ACATTTTTCT
2435403 TTGTATCGATACA
1 TTGTATCGATACA
2435416 TTGTATCGATACA
1 TTGTATCGATACA
*
2435429 CTGTATCGATACA
1 TTGTATCGATACA
2435442 GGGGGATTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:2438050 original size:33 final size:33
Alignment explanation
Indices: 2438008--2438070 Score: 92
Period size: 33 Copynumber: 1.9 Consensus size: 33
2437998 GCCAAACTTG
* *
2438008 TATCGATACAC-CAAAGTATGTATCGATACAATA
1 TATCGATACACAAAAAAT-TGTATCGATACAATA
2438041 TATCGATACACAAAAAATTGTATCGATACA
1 TATCGATACACAAAAAATTGTATCGATACA
2438071 TTGGCTTGTA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
33 23 0.85
34 4 0.15
ACGTcount: A:0.44, C:0.17, G:0.11, T:0.27
Consensus pattern (33 bp):
TATCGATACACAAAAAATTGTATCGATACAATA
Found at i:2439454 original size:19 final size:20
Alignment explanation
Indices: 2439430--2439483 Score: 56
Period size: 21 Copynumber: 2.7 Consensus size: 20
2439420 TAGCGATACA
2439430 TTGTATCGATACAACACT-T
1 TTGTATCGATACAACACTGT
* ***
2439449 TTGTATCCATACGTTTACTGT
1 TTGTATCGATAC-AACACTGT
2439470 TTGTATCGATACAA
1 TTGTATCGATACAA
2439484 ATTGTTGAAA
Statistics
Matches: 26, Mismatches: 7, Indels: 3
0.72 0.19 0.08
Matches are distributed among these distances:
19 11 0.42
20 3 0.12
21 12 0.46
ACGTcount: A:0.28, C:0.19, G:0.13, T:0.41
Consensus pattern (20 bp):
TTGTATCGATACAACACTGT
Found at i:2440070 original size:669 final size:669
Alignment explanation
Indices: 2438787--2446329 Score: 10878
Period size: 669 Copynumber: 11.4 Consensus size: 669
2438777 AAGCTTTCAT
*
2438787 GATACTTTTACTGTTTGTATCGATACAAATTGTTGAAATTCAAAATGTTTGACCGTTGGGACCTT
1 GATACATTTACTGTTTGTATCGATACAAATTGTTGAAATTCAAAATGTTTGACCGTTGGGACCTT
* * *
2438852 GTATCGATACATTCTAGACATGTACCGATACATTTGGACAAAAATGTGATTTTTTCATCCTTTCT
66 GTATCGATACATTCTAGACATGTATCGATATATTTGGACAAAAATGTGATTTTTTCATCCTTTTT
* * * *
2438917 ACCTTCTGAACACTCTATCTCAACTAAGGACGACAGAAAATGAATTCGTCCCCACATATGTCCAA
131 TCCTTCTGAACACTCTATCTCGACTAAGGACGATAGGAAATGAATTCGTCCCCACATATGTCCAA
*
2438982 TCCTCCACCTACTAGCTAGGCCTCTAGTTGTCGAAAATTGGCCCGGACAAAATGAGGTGTCTACA
196 TCCTCCACCTACTAGCTAGGCCTCAAGTTGTCGAAAATTGGCCCGGACAAAATGAGGTGTCTACA
* * * *
2439047 GCTGCCCCTCTTTGGCAGTTTCTGAGTATCAAGAACAGGGCAAAGATAAATAGACCCCATTTTGT
261 GCTGCCCCTCTTTGGCCGTTTCTGAGTATCAGGAACAGGGCAAAGACAAATAGACACCATTTTGT
* * * * *
2439112 CCGTGGCCACATGTTGTGACCTTTGGTTGATTAACGCTTCGCCGTCATGAAGAATATATTGGCGA
326 CCGCGGCCGCATGTTGTGACCTTTGGTTGATTAATGCTTCGCCGTGATGAAGAATATATTGGCGG
* * * * *
2439177 CGGATCCTATCGAAAAGTGAGTTTTTAGGGTTTGTCGTCCCTACTAGGTTTTGGAATTTTCTACG
391 CGGTTCCGATCGAAAAGTGAGTTTGTAGGGTTTGTCCTCCCTACTAGGTTTTGGAATTTTCTAAG
2439242 GCTTGACCTCCTTAGATAGGTGTAGATTGGTGTAGAGTTTGGAAGGGATTTGGAAGGATATGGTC
456 GCTTGACCTCCTTAGATAGGTGTAGATTGGTGTAGAGTTTGGAAGGGATTTGGAAGGATATGGTC
* * * *
2439307 AGGGTTTTGGAACGTGCCACTCTGCAGATGTATCGATACAAAGATCAATGTATCAATACAATATA
521 AGTGTTTTGCAATGTGCCACTGTGCAGATGTATCGATACAAAGATCAATGTATCAATACAATATA
*
2439372 TCGATACATTGAATAATGTATCGATACATTTCCTTAGCAATAGCTTTGTAGCGATACATTGTATC
586 TCGATACATTGAATAATGTATCGATACATTTCCTTGGCAATAGCTTTGTAGCGATACATTGTATC
*
2439437 GATACAACACTTTTGTATC
651 GATACAACACTTATGTATC
* * * *
2439456 CATACGTTTACTGTTTGTATCGATACAAATTGTTGAAATTCAAAATGTTTGATCGTTGGGACCCT
1 GATACATTTACTGTTTGTATCGATACAAATTGTTGAAATTCAAAATGTTTGACCGTTGGGACCTT
* *
2439521 GTATCGATACATACTAGACATGTATCGATATATTTGGGCAAAAATGTGATTTTTTCATCCTTTTT
66 GTATCGATACATTCTAGACATGTATCGATATATTTGGACAAAAATGTGATTTTTTCATCCTTTTT
* *
2439586 GCCTTCCGAACACTCTATCTCGACTAAGGACGATAGGAAATGAATTCGTCCCCACATATGTCCAA
131 TCCTTCTGAACACTCTATCTCGACTAAGGACGATAGGAAATGAATTCGTCCCCACATATGTCCAA
* * * * *
2439651 TCCTCCAACAACTAGCTAGGCCTCTAGTTATCGAAAATTGGCCCGGACAAAATGAGGTGTTTACA
196 TCCTCCACCTACTAGCTAGGCCTCAAGTTGTCGAAAATTGGCCCGGACAAAATGAGGTGTCTACA
* * * *
2439716 GCTGCCCCGCTTTGTCCGTTTCTGAGTATCAAGAACAGGGCAAAGACAAATAGACCCCATTTTGT
261 GCTGCCCCTCTTTGGCCGTTTCTGAGTATCAGGAACAGGGCAAAGACAAATAGACACCATTTTGT
* * * * *
2439781 CCGCGGCCACATGTGGTGACCTTTGGTTGATTAACGCTTCGTCGTCATGAAGAATATATTGGCGG
326 CCGCGGCCGCATGTTGTGACCTTTGGTTGATTAATGCTTCGCCGTGATGAAGAATATATTGGCGG
* * * * *
2439846 CGATTCCGATCGAAAAGTGAGTTTGTAGGCTTTGCCCTCCCTACAAGGTGTTGGAATTTTCTAAG
391 CGGTTCCGATCGAAAAGTGAGTTTGTAGGGTTTGTCCTCCCTACTAGGTTTTGGAATTTTCTAAG
* *
2439911 GCTTGAACTCCTTAGATAGGTATAGATTGGTGTAGAGTTTGGAAGGGATTTGGAAGGATATGGTC
456 GCTTGACCTCCTTAGATAGGTGTAGATTGGTGTAGAGTTTGGAAGGGATTTGGAAGGATATGGTC
* *
2439976 AGTGTTTTGGAATGTGCCACTGTGCAGATGTATCGATACAAAGATCAATGTATCAATACAAAATA
521 AGTGTTTTGCAATGTGCCACTGTGCAGATGTATCGATACAAAGATCAATGTATCAATACAATATA
*
2440041 TCGATACAGTGAATAATGTATCGATACATTTCCTTGGCAATAGCTTTGTAGCGATACATTGTATC
586 TCGATACATTGAATAATGTATCGATACATTTCCTTGGCAATAGCTTTGTAGCGATACATTGTATC
2440106 G-----------A--TA-C
651 GATACAACACTTATGTATC
* * *
2440111 G-----TTTACTGTTTATATCGATACAAATTGTTGAAATTCAAAATGTTTGATCGTTGGGACCCT
1 GATACATTTACTGTTTGTATCGATACAAATTGTTGAAATTCAAAATGTTTGACCGTTGGGACCTT
* *
2440171 GTATCGATACATTCTAGACATGTATCGATATATTTGGGCAAAAATGTGATTTTTTCATCTTTTTT
66 GTATCGATACATTCTAGACATGTATCGATATATTTGGACAAAAATGTGATTTTTTCATCCTTTTT
* * *
2440236 TCCTTTTGAACACTCTATCTCGACTAAGGACGATATGAAATGAATTCGTCCCTACATATGTCCAA
131 TCCTTCTGAACACTCTATCTCGACTAAGGACGATAGGAAATGAATTCGTCCCCACATATGTCCAA
* * *
2440301 TCCTCCACCTACTAGCTAGGCGTCGAGTTGTCGAAAATTGGCCCGGACAAAATGAGGTATCTACA
196 TCCTCCACCTACTAGCTAGGCCTCAAGTTGTCGAAAATTGGCCCGGACAAAATGAGGTGTCTACA
* *
2440366 GCTGCCCCTCTTTGGCCGTTTCTAAGTATCAAGAACAGGGCAAAGACAAATAGACACCATTTTGT
261 GCTGCCCCTCTTTGGCCGTTTCTGAGTATCAGGAACAGGGCAAAGACAAATAGACACCATTTTGT
*
2440431 CCGCGGCCGCATGTTGTGACC-TTGGTGTGATTAATGCTTCGCCGTGATAAAGAATATATTGGCG
326 CCGCGGCCGCATGTTGTGACCTTTGGT-TGATTAATGCTTCGCCGTGATGAAGAATATATTGGCG
* * *
2440495 GCGGTTCCAATCGAAAAGGGAGTTTATAGGGTTTGTCCTCCCTACTAGGTTTTGGAATTTTCTAA
390 GCGGTTCCGATCGAAAAGTGAGTTTGTAGGGTTTGTCCTCCCTACTAGGTTTTGGAATTTTCTAA
* * *
2440560 GGCTTGGCCTCCTTAGATAGGTGTAGATTGGAGTAGAGTTTGGAGGGGATTTGGAAGGATATGGT
455 GGCTTGACCTCCTTAGATAGGTGTAGATTGGTGTAGAGTTTGGAAGGGATTTGGAAGGATATGGT
* * * * ** *
2440625 CAGTGTTTTGCAATATGCCACTCTGCAGATGTATCGATAGAAAGTTCAATGTATCAATGGAATGT
520 CAGTGTTTTGCAATGTGCCACTGTGCAGATGTATCGATACAAAGATCAATGTATCAATACAATAT
** * * * * ** **
2440690 ATCGATACATTTCTAGAATGTATCAATACAAGGTCCCAACGGTCAA-A-CATTTTGAATTTC-A-
585 ATCGATACA-TTGAATAATGTATCGATAC-A-TTTCC-TTGG-CAATAGC--TTTG--TAGCGAT
2440751 ACAATTTGTATCGATACAACACTTATGTATC
641 AC-A-TTGTATCGATACAACACTTATGTATC
2440782 GATACATTTACTGTTTGTATCGATACAAATTGTTGAAATTCAAAATGTTTGACCGTTGGGACCTT
1 GATACATTTACTGTTTGTATCGATACAAATTGTTGAAATTCAAAATGTTTGACCGTTGGGACCTT
*
2440847 GTATCGATACATTCTAGAAATGTATCGATATATTTGGACAAAAATGTGATTTTTTCATCCTTTTT
66 GTATCGATACATTCTAGACATGTATCGATATATTTGGACAAAAATGTGATTTTTTCATCCTTTTT
* * * *
2440912 TCCTTCTAAACACTCTATCTAGACTAAAGACGATAGGAAATGAATTCCTCCCCACATATGTCCAA
131 TCCTTCTGAACACTCTATCTCGACTAAGGACGATAGGAAATGAATTCGTCCCCACATATGTCCAA
* * * * * *
2440977 TCCTTCACCTACTACCTAGGCTTTAAGTTGTCGAAAATTAGCCCGAGA-AAAATGAGGTGTTTAC
196 TCCTCCACCTACTAGCTAGGCCTCAAGTTGTCGAAAATTGGCCCG-GACAAAATGAGGTGTCTAC
*
2441041 AGCTGCCCCTCTTTGGCCGTTTCTGAGTATCAGGAATAGGGCAAAGACAAATAGACACCATTTTG
260 AGCTGCCCCTCTTTGGCCGTTTCTGAGTATCAGGAACAGGGCAAAGACAAATAGACACCATTTTG
* * *
2441106 TCCGCGGCCGCATGTTGTGATCTTTGGTTGATTAATGATTCACCGTGATGAAGAATATATTGGCG
325 TCCGCGGCCGCATGTTGTGACCTTTGGTTGATTAATGCTTCGCCGTGATGAAGAATATATTGGCG
*
2441171 GCGATTCCGATCGAAAAGTGAGTTTGTAGGGTTTGTCCTCCCTACTAGGTTTTGGAATTTTCTAA
390 GCGGTTCCGATCGAAAAGTGAGTTTGTAGGGTTTGTCCTCCCTACTAGGTTTTGGAATTTTCTAA
* *
2441236 GGCTTGACGTCCTTAGATAGGTGTAGATTGGTGTAGCGTTTGGAAGGGATTTGGAAGGATATGGT
455 GGCTTGACCTCCTTAGATAGGTGTAGATTGGTGTAGAGTTTGGAAGGGATTTGGAAGGATATGGT
** *
2441301 CAGTGTTTTGGGACGTGCCACTGTGCAGATGTATCGATACAAAGATCAATGTATCAATACAATAT
520 CAGTGTTTTGCAATGTGCCACTGTGCAGATGTATCGATACAAAGATCAATGTATCAATACAATAT
* *
2441366 ATAGATACATTGAATAATGTATCGATACATTTCCTTAGCAATAGCTTTGTAGCGATACATTGTAT
585 ATCGATACATTGAATAATGTATCGATACATTTCCTTGGCAATAGCTTTGTAGCGATACATTGTAT
* *
2441431 CGATACAACACTTTTGTATT
650 CGATACAACACTTATGTATC
* *
2441451 GATACGA-TTACTATTTGTATCGATACAAATTGTTGAAATTCAAAATGTTTGACCGTTGGGACCC
1 GATAC-ATTTACTGTTTGTATCGATACAAATTGTTGAAATTCAAAATGTTTGACCGTTGGGACCT
* * *
2441515 TGTATCAATACATACTAGACATGTATCGATATATTTGGGCAAAAATGTGATTTTTTCATCCTTTT
65 TGTATCGATACATTCTAGACATGTATCGATATATTTGGACAAAAATGTGATTTTTTCATCCTTTT
* * *
2441580 TTCCTTTTGAACACTCTATCTCGACTAAGGATGATAGGAAATGAATTCGTCCCTACATATGTCCA
130 TTCCTTCTGAACACTCTATCTCGACTAAGGACGATAGGAAATGAATTCGTCCCCACATATGTCCA
* * *
2441645 ATCCTCCACCTACTAGCTAGGCGTCAAGTTGCCGAAAATTGGCCCGGACAAAATAAGGTGTCTAC
195 ATCCTCCACCTACTAGCTAGGCCTCAAGTTGTCGAAAATTGGCCCGGACAAAATGAGGTGTCTAC
* *
2441710 AGCTGCCCCTCTTTGGCCGTTTCTAAGTATCAAGAACAGGGCAAAGACAAATAGACACCATTTTG
260 AGCTGCCCCTCTTTGGCCGTTTCTGAGTATCAGGAACAGGGCAAAGACAAATAGACACCATTTTG
** * *
2441775 TCCGCGGCCGCATGTTGTGACCTTTGGGCGATTAATGCTTCGCCGTCATGAAGAATATATTGGTG
325 TCCGCGGCCGCATGTTGTGACCTTTGGTTGATTAATGCTTCGCCGTGATGAAGAATATATTGGCG
* *
2441840 GCGGTTCTGATCGAAAAGTGAGTTTGTATGGTTTGTCCTCCCTACTAGGTTTTGGAATTTTCTAA
390 GCGGTTCCGATCGAAAAGTGAGTTTGTAGGGTTTGTCCTCCCTACTAGGTTTTGGAATTTTCTAA
* * **
2441905 GGCTTGACCTCCTTAGATACGTGTAGATTGGTGAAGAGTTTGGAAGGGATTTACAAGGATATGGT
455 GGCTTGACCTCCTTAGATAGGTGTAGATTGGTGTAGAGTTTGGAAGGGATTTGGAAGGATATGGT
* * *
2441970 CAGTGTTTTGCAATGTGCCACTGTGTAGATGTATGGATACAAAGATCAATGTATTAATACAATAT
520 CAGTGTTTTGCAATGTGCCACTGTGCAGATGTATCGATACAAAGATCAATGTATCAATACAATAT
* *
2442035 ATCGATACATTGAATAAT-TAATCAATACATTTCCTTGGCAGTAGCTTTGTAGCGATACATTGTA
585 ATCGATACATTGAATAATGT-ATCGATACATTTCCTTGGCAATAGCTTTGTAGCGATACATTGTA
* * *
2442099 TCGATACAACACTTTTGTTTT
649 TCGATACAACACTTATGTATC
*
2442120 GATAC-TTTAACTGTTTGTATCGATACAAATTGTTAAAATTCAAAATGTTTGACCGTTGGGACCT
1 GATACATTT-ACTGTTTGTATCGATACAAATTGTTGAAATTCAAAATGTTTGACCGTTGGGACCT
* * *
2442184 TGTATCGAAACATTCTAGACATGTATCGAAACATTTGGACAAAAATGTGATTTTTTCATCCTTTT
65 TGTATCGATACATTCTAGACATGTATCGATATATTTGGACAAAAATGTGATTTTTTCATCCTTTT
* * *
2442249 TGCCTTCTGAACACTCTATCTCGACTAAGGACGATAGGAAATGAATTCGACCCCACATACGTCCA
130 TTCCTTCTGAACACTCTATCTCGACTAAGGACGATAGGAAATGAATTCGTCCCCACATATGTCCA
* ** *
2442314 ATCCTCCACCAACTAGCTAGGCCTTTAGTTGTCGAAAATTGGCCCGGACAAAATGAGGTGTTTAC
195 ATCCTCCACCTACTAGCTAGGCCTCAAGTTGTCGAAAATTGGCCCGGACAAAATGAGGTGTCTAC
* *
2442379 AGCTGCCCCTCTTTGGCCGTTTCTGAGTATCAGGAACAAGGCAAAGACAAATAGACCCCATTTTG
260 AGCTGCCCCTCTTTGGCCGTTTCTGAGTATCAGGAACAGGGCAAAGACAAATAGACACCATTTTG
* * * *
2442444 TCCGCGGCCACATGTTGTGACCTTTGGTTGATTAACGCTTCGCCGTCATTAAGAATATATTGGCG
325 TCCGCGGCCGCATGTTGTGACCTTTGGTTGATTAATGCTTCGCCGTGATGAAGAATATATTGGCG
*
2442509 GCGGTTCGGATCGAAAAGTGAGTTTGTAGGGTTTGTCCTCCCTACTAGGTTTTGGAATTTTCTAA
390 GCGGTTCCGATCGAAAAGTGAGTTTGTAGGGTTTGTCCTCCCTACTAGGTTTTGGAATTTTCTAA
* *
2442574 GGCTTGAACTCCTTAGATAGGTATAGATTGGTGTAGAGTTTGGAAGGGATTTGGAAGGATATGGT
455 GGCTTGACCTCCTTAGATAGGTGTAGATTGGTGTAGAGTTTGGAAGGGATTTGGAAGGATATGGT
*
2442639 CAGTGTTTTGGAATGTGCCACTGTGCAGATGTATCGATACAAAGATCAATGTATCAATACAATAT
520 CAGTGTTTTGCAATGTGCCACTGTGCAGATGTATCGATACAAAGATCAATGTATCAATACAATAT
2442704 ATCGATACATTGAATAATGTATCGATACATTTCCTTGGCAATAGC-TT-T-G-G----A--G---
585 ATCGATACATTGAATAATGTATCGATACATTTCCTTGGCAATAGCTTTGTAGCGATACATTGTAT
2442756 CGAT---ACA---ATGTATC
650 CGATACAACACTTATGTATC
** * * *
2442770 GATATGTTTACTGTTTGTATCGATAAAAATTGTTGAAATTCAAAATGTTTGATCGTTGGGACCCT
1 GATACATTTACTGTTTGTATCGATACAAATTGTTGAAATTCAAAATGTTTGACCGTTGGGACCTT
*
2442835 GTATCGATACATTCTAGACATGTATCGATATATTTGGGCAAAAATGTGATTTTTTCATCCTTTTT
66 GTATCGATACATTCTAGACATGTATCGATATATTTGGACAAAAATGTGATTTTTTCATCCTTTTT
* * *
2442900 TCCTTTTGAACACTCTATCTTGACTAAGGACGATAGGAAATGAATTCGTCCCTACATATGTCCAA
131 TCCTTCTGAACACTCTATCTCGACTAAGGACGATAGGAAATGAATTCGTCCCCACATATGTCCAA
* *
2442965 TCCTCCACCTACTAGCTAGGCGTCAAGTTGTC-AGAAATTGGCCCGGACAAAATGAGGTGTCTAT
196 TCCTCCACCTACTAGCTAGGCCTCAAGTTGTCGA-AAATTGGCCCGGACAAAATGAGGTGTCTAC
* *
2443029 AGCTGCCCCTCTTTGGCCGTTTCTAAGTATCAAGAACAGGGCAAAGACAAATAGACACCATTTTG
260 AGCTGCCCCTCTTTGGCCGTTTCTGAGTATCAGGAACAGGGCAAAGACAAATAGACACCATTTTG
* * * *
2443094 TCTGCGGCCGCATGTTGTGACCTTTGGGTGATTAATGCTTCGTCGTGATGAAGAATATGTTGGCG
325 TCCGCGGCCGCATGTTGTGACCTTTGGTTGATTAATGCTTCGCCGTGATGAAGAATATATTGGCG
*
2443159 GCGGTTCCGATCGAAAAGGGAGTTTGTAGGGTTTGTCCTCCCTACTAGGTTTTGGAATTTTCTAA
390 GCGGTTCCGATCGAAAAGTGAGTTTGTAGGGTTTGTCCTCCCTACTAGGTTTTGGAATTTTCTAA
* * * * *
2443224 GGTTTGGCCCCCTTAGATAGGTGTAGATTGGAGTAGAGTTTGGAGGGGATTTGGAAGGATATGGT
455 GGCTTGACCTCCTTAGATAGGTGTAGATTGGTGTAGAGTTTGGAAGGGATTTGGAAGGATATGGT
* * * ** *
2443289 CAGTGTTTTGCAATGTGCCACTCTGCAGATGTATCGATAGAAAGTTCAATGTATCAATGGAATGT
520 CAGTGTTTTGCAATGTGCCACTGTGCAGATGTATCGATACAAAGATCAATGTATCAATACAATAT
** * * * * ** **
2443354 ATCGATACATTTCTAGAATGTATCAATACAAGGTCCCAACGGTCAA-A-CATTTTGAATTTC-A-
585 ATCGATACA-TTGAATAATGTATCGATAC-A-TTTCC-TTGG-CAATAGC--TTTG--TAGCGAT
2443415 ACAATTTGTATCGATACAACACTTATGTATC
641 AC-A-TTGTATCGATACAACACTTATGTATC
2443446 GATACATTTACTGTTTGTATCGATACAAATTGTTGAAATTCAAAATGTTTGACCGTTGGGACCTT
1 GATACATTTACTGTTTGTATCGATACAAATTGTTGAAATTCAAAATGTTTGACCGTTGGGACCTT
* * * *
2443511 GTATCGGTACATTCTAGAAATGTATCGATACATTTGGACAAAAATGTGATTTTTCCATCCTTTTT
66 GTATCGATACATTCTAGACATGTATCGATATATTTGGACAAAAATGTGATTTTTTCATCCTTTTT
* *
2443576 TCCTTCTGAACACTCTATCTCGACTAAAGACGATAGGAAATGAATTCCTCCCCACATATGTCCAA
131 TCCTTCTGAACACTCTATCTCGACTAAGGACGATAGGAAATGAATTCGTCCCCACATATGTCCAA
* * * * * *
2443641 TCCTTCACCTACTACCTAGGCCTTAAGTTGTCAAAAATTGGCCCGGACAAAATGAGGTATTTACA
196 TCCTCCACCTACTAGCTAGGCCTCAAGTTGTCGAAAATTGGCCCGGACAAAATGAGGTGTCTACA
*
2443706 GCTGCCCCTCTTTGGCCGTTTCTGAGTATCAGGAATAGGGCAAAGACAAATAGACACCATTTTGT
261 GCTGCCCCTCTTTGGCCGTTTCTGAGTATCAGGAACAGGGCAAAGACAAATAGACACCATTTTGT
* * * *
2443771 CCGCGGTCGCTTGTTGTGACCTTTGGTTGATTAATGCTTCACCGTGATGAAGAATATATTGGCAG
326 CCGCGGCCGCATGTTGTGACCTTTGGTTGATTAATGCTTCGCCGTGATGAAGAATATATTGGCGG
* *
2443836 CGGTTCCGATCGAAAAGTGAGTTTGCAGGGTTTGTCATCCCTACTAGGTTTTGGAATTTTCTAAG
391 CGGTTCCGATCGAAAAGTGAGTTTGTAGGGTTTGTCCTCCCTACTAGGTTTTGGAATTTTCTAAG
*
2443901 GCTTGACCTCCGTAGATAGGTGTAGATTGGTGTAGAGTTTGGAAGGGATTTGGAAGGATATGGTC
456 GCTTGACCTCCTTAGATAGGTGTAGATTGGTGTAGAGTTTGGAAGGGATTTGGAAGGATATGGTC
* *
2443966 AGTGTTTTGCAATGTGCCACTGTGCAGATGTATCGATACAAAGATCAATGT-T-AAAACGCAATG
521 AGTGTTTTGCAATGTGCCACTGTGCAGATGTATCGATACAAAGATCAATGTATCAATA--CAATA
* * * * ** *
2444029 TATCGATACTTTGAATAAAGTATCGATACATTTCCTTGGCAGTAGCTTTATATTGAAACATTGTA
584 TATCGATACATTGAATAATGTATCGATACATTTCCTTGGCAATAGCTTTGTAGCGATACATTGTA
* * *
2444094 ACGACACAACACTTATGGATC
649 TCGATACAACACTTATGTATC
* *
2444115 GATACATTTACTGTTTGTATCGATACAAATTATTGAAATTCAAAATGTTTGATCGTTGGGACCTT
1 GATACATTTACTGTTTGTATCGATACAAATTGTTGAAATTCAAAATGTTTGACCGTTGGGACCTT
* *
2444180 GTATCAATACATTCTAGA-ATTGTATCGATATATTTGGACAAATATGTGATTTTTTCATCCTTTT
66 GTATCGATACATTCTAGACA-TGTATCGATATATTTGGACAAAAATGTGATTTTTTCATCCTTTT
* * *
2444244 TGCCTTCTGAACACTCTATCTCGGCTAAGGACGATAGAAAATGAATTCGTCCCCACATATGTCCA
130 TTCCTTCTGAACACTCTATCTCGACTAAGGACGATAGGAAATGAATTCGTCCCCACATATGTCCA
* * * *
2444309 ATCCTCCACCTACTAGCTAAGCCTCAAGTTGTCAAAAATTGGTCCGAACAAAATGAGGTGTCTAC
195 ATCCTCCACCTACTAGCTAGGCCTCAAGTTGTCGAAAATTGGCCCGGACAAAATGAGGTGTCTAC
* *
2444374 AGCTGCCCCTCTTAGGCCGTTTCTGAGTATCAGGAA-AGGGGCAAAAACAAATAGACACCATTTT
260 AGCTGCCCCTCTTTGGCCGTTTCTGAGTATCAGGAACA-GGGCAAAGACAAATAGACACCATTTT
* *
2444438 GTCCGCGGCCGCATGTTGTGACCTTTGGGTGATTAATGCTTCGCCGTGATGAAGAATGTATTGGC
324 GTCCGCGGCCGCATGTTGTGACCTTTGGTTGATTAATGCTTCGCCGTGATGAAGAATATATTGGC
*
2444503 GGCGGTTTCGATCGAAAAGTGAGTTTGTAGGGTTTGTCCTCCCTACTAGGTTTTGGAATTTTCTA
389 GGCGGTTCCGATCGAAAAGTGAGTTTGTAGGGTTTGTCCTCCCTACTAGGTTTTGGAATTTTCTA
*
2444568 AAGCTTGACCTCCTTAGATAGGTGTAGATTGGTGTAGAGTTTGGAAGGGATTTGGAAGGATATGG
454 AGGCTTGACCTCCTTAGATAGGTGTAGATTGGTGTAGAGTTTGGAAGGGATTTGGAAGGATATGG
* * *
2444633 TCAGTGTTTTGGAATGTGCCACTGTGCAGATGTATCGATACAAAGAGCAATGTATCAGTACAATA
519 TCAGTGTTTTGCAATGTGCCACTGTGCAGATGTATCGATACAAAGATCAATGTATCAATACAATA
*
2444698 TATCGATACATTGAATAATGTATCGATACATTTCCTTGGCAATAGCTTTGTAGCGATACATTATA
584 TATCGATACATTGAATAATGTATCGATACATTTCCTTGGCAATAGCTTTGTAGCGATACATTGTA
*
2444763 TCGATACAACCCTTATGTATC
649 TCGATACAACACTTATGTATC
* * *
2444784 GACACATTTACTGTTTGTATCAATACAAATTGTTGAAATTCAAAATCTTTGACCGTTGGGACCTT
1 GATACATTTACTGTTTGTATCGATACAAATTGTTGAAATTCAAAATGTTTGACCGTTGGGACCTT
* * *
2444849 GTATCGATACATTCTAGAAATGTATCGATACATTTGGACAAAAATGTGATTTTTTCATCTTTTTT
66 GTATCGATACATTCTAGACATGTATCGATATATTTGGACAAAAATGTGATTTTTTCATCCTTTTT
* * *
2444914 TCCTTCTGAACACTCTATCTCGACTAAGAACAATAGGAAGTGAATTCGTCCCCACATATGTCCAA
131 TCCTTCTGAACACTCTATCTCGACTAAGGACGATAGGAAATGAATTCGTCCCCACATATGTCCAA
* * *
2444979 TCCTCCACCTACTAGCCT-GGCCTCAAGTTGTCGAAAACTGGCCCGGACAAAATGAGGTGTTTAT
196 TCCTCCACCTACTAG-CTAGGCCTCAAGTTGTCGAAAATTGGCCCGGACAAAATGAGGTGTCTAC
* *
2445043 AGCTGCCCCTCTTTGGTCGTTTCTGAGTATCAGGAACAGGGCAAAGACAAATAGACCCCATTTTG
260 AGCTGCCCCTCTTTGGCCGTTTCTGAGTATCAGGAACAGGGCAAAGACAAATAGACACCATTTTG
* * *
2445108 TCCGCGGCCACATGTTGTGACCTTTGGGTGATTAATGCTTCACCGTGATGAAGAATATATTGGCG
325 TCCGCGGCCGCATGTTGTGACCTTTGGTTGATTAATGCTTCGCCGTGATGAAGAATATATTGGCG
* * **
2445173 GCGGTTCTGATCGAAAAGTGATTTTGTAGGGTTTGTCCTCCCTACTAGGTTTTCTAATTTTCTAA
390 GCGGTTCCGATCGAAAAGTGAGTTTGTAGGGTTTGTCCTCCCTACTAGGTTTTGGAATTTTCTAA
* * *
2445238 GGCTTGACCTCCTTAGATAGGTGTTGATTGGTGAAGAGTTTGGAAGGGATTTGCAAGGATATGGT
455 GGCTTGACCTCCTTAGATAGGTGTAGATTGGTGTAGAGTTTGGAAGGGATTTGGAAGGATATGGT
* *
2445303 CAGTGTTTTGCAATGTGCCACTGTGCAGATGTATGGATACAAAGATCAATGTATTAATACAATAT
520 CAGTGTTTTGCAATGTGCCACTGTGCAGATGTATCGATACAAAGATCAATGTATCAATACAATAT
* * * *
2445368 ATCGATACATTGAATAATTTATCGATACATTTCCTTGGCAGTAGCTATGTAACGATACATTGTAT
585 ATCGATACATTGAATAATGTATCGATACATTTCCTTGGCAATAGCTTTGTAGCGATACATTGTAT
* * *
2445433 CGATACAACACTTTTGTTTT
650 CGATACAACACTTATGTATC
* *
2445453 GATACTTTTACTGTTTGTATCGATACAAATTGTTGAAATTCAAAATGTTTGACCATTGGGACCTT
1 GATACATTTACTGTTTGTATCGATACAAATTGTTGAAATTCAAAATGTTTGACCGTTGGGACCTT
*
2445518 GTATCG----A---T--ACAT-T-T-G--------GG-CGAAAATGTGATTTTTTCATCCTTTTT
66 GTATCGATACATTCTAGACATGTATCGATATATTTGGACAAAAATGTGATTTTTTCATCCTTTTT
* * * **
2445562 GCCTTTTGGACACTCTATCTCGACTAAGGACGATAGGAAATGAATTCGTCCCTGCATATGTCCAA
131 TCCTTCTGAACACTCTATCTCGACTAAGGACGATAGGAAATGAATTCGTCCCCACATATGTCCAA
* *
2445627 ACCTCCACCTACTAGCTGGGCCTCAAGTTGTCGAAAATTGGCCCGGACAAAATGAGGTGTCTACA
196 TCCTCCACCTACTAGCTAGGCCTCAAGTTGTCGAAAATTGGCCCGGACAAAATGAGGTGTCTACA
*
2445692 GCTGCCCCTCTTTGGCCGTTTCTGAGTATCAGGAACAGGGCAAAGACAAATCGACACCATTTTGT
261 GCTGCCCCTCTTTGGCCGTTTCTGAGTATCAGGAACAGGGCAAAGACAAATAGACACCATTTTGT
* * * * * * *
2445757 CTGCGGCCGCATGTTGTGAACTTTAGATGATTAATGCTTTGCCGTGATGAAGAATGTATTGGCAG
326 CCGCGGCCGCATGTTGTGACCTTTGGTTGATTAATGCTTCGCCGTGATGAAGAATATATTGGCGG
* * * *
2445822 CGGTTTCGATCGAAAATTAATTTTGTAGGGTTTGTCCTCCCTACTAGGTTTTGGAATTTTCTAAG
391 CGGTTCCGATCGAAAAGTGAGTTTGTAGGGTTTGTCCTCCCTACTAGGTTTTGGAATTTTCTAAG
* * *
2445887 GCTTGACCTCC---------T-TAGATTGGTGTAGAGTTTGGAAGAGATTGGGAAGGATATGGTT
456 GCTTGACCTCCTTAGATAGGTGTAGATTGGTGTAGAGTTTGGAAGGGATTTGGAAGGATATGGTC
* * *
2445942 AGTGTTTTGCAATGTGCCACTGTGCAGATGTATCGATGCAAAGATCAATGTATCGATACAATGTA
521 AGTGTTTTGCAATGTGCCACTGTGCAGATGTATCGATACAAAGATCAATGTATCAATACAATATA
* * *
2446007 TCAATACGTTGAATAATGTATCGATACATTTCCTTGGCAATAGCTTTGTAGCGATACATTGTATT
586 TCGATACATTGAATAATGTATCGATACATTTCCTTGGCAATAGCTTTGTAGCGATACATTGTATC
*
2446072 GATACGACACTTATGTATC
651 GATACAACACTTATGTATC
* *
2446091 AATACATTTACTGTTTGTATCGATAGAAATTGTTGAAATTCAAAATGTTTGACC------A---T
1 GATACATTTACTGTTTGTATCGATACAAATTGTTGAAATTCAAAATGTTTGACCGTTGGGACCTT
* * * *
2446147 -TA--G-GAC--T-T-----TGTATCGATACATTTGGATAAAAATCTGATTTTTTCAT-CTTTTT
66 GTATCGATACATTCTAGACATGTATCGATATATTTGGACAAAAATGTGATTTTTTCATCCTTTTT
* * * *
2446199 TGCCTTCTGAACACTCTATCTCAACTAAAGACAATAGGAAATGAATTCATCCCCACATATGTCCA
131 T-CCTTCTGAACACTCTATCTCGACTAAGGACGATAGGAAATGAATTCGTCCCCACATATGTCCA
* * * **
2446264 ATCCTCCACCTACTAGCTGGGCCTCAAGTTGTCAAAAATTGGCTCAAACAAAATGAGGTGTCTAC
195 ATCCTCCACCTACTAGCTAGGCCTCAAGTTGTCGAAAATTGGCCCGGACAAAATGAGGTGTCTAC
2446329 A
260 A
2446330 ATAGTCTAAT
Statistics
Matches: 6198, Mismatches: 570, Indels: 243
0.88 0.08 0.03
Matches are distributed among these distances:
626 2 0.00
627 1 0.00
628 3 0.00
629 3 0.00
632 1 0.00
637 8 0.00
638 354 0.06
639 1 0.00
647 2 0.00
648 328 0.05
649 8 0.00
650 1076 0.17
651 32 0.01
652 2 0.00
653 11 0.00
654 6 0.00
655 13 0.00
656 10 0.00
657 11 0.00
658 1 0.00
659 3 0.00
660 3 0.00
661 1 0.00
662 1 0.00
664 1 0.00
665 2 0.00
666 1 0.00
667 2 0.00
668 10 0.00
669 3132 0.51
670 17 0.00
671 20 0.00
672 5 0.00
673 11 0.00
674 4 0.00
675 30 0.00
676 1074 0.17
677 8 0.00
ACGTcount: A:0.28, C:0.18, G:0.21, T:0.33
Consensus pattern (669 bp):
GATACATTTACTGTTTGTATCGATACAAATTGTTGAAATTCAAAATGTTTGACCGTTGGGACCTT
GTATCGATACATTCTAGACATGTATCGATATATTTGGACAAAAATGTGATTTTTTCATCCTTTTT
TCCTTCTGAACACTCTATCTCGACTAAGGACGATAGGAAATGAATTCGTCCCCACATATGTCCAA
TCCTCCACCTACTAGCTAGGCCTCAAGTTGTCGAAAATTGGCCCGGACAAAATGAGGTGTCTACA
GCTGCCCCTCTTTGGCCGTTTCTGAGTATCAGGAACAGGGCAAAGACAAATAGACACCATTTTGT
CCGCGGCCGCATGTTGTGACCTTTGGTTGATTAATGCTTCGCCGTGATGAAGAATATATTGGCGG
CGGTTCCGATCGAAAAGTGAGTTTGTAGGGTTTGTCCTCCCTACTAGGTTTTGGAATTTTCTAAG
GCTTGACCTCCTTAGATAGGTGTAGATTGGTGTAGAGTTTGGAAGGGATTTGGAAGGATATGGTC
AGTGTTTTGCAATGTGCCACTGTGCAGATGTATCGATACAAAGATCAATGTATCAATACAATATA
TCGATACATTGAATAATGTATCGATACATTTCCTTGGCAATAGCTTTGTAGCGATACATTGTATC
GATACAACACTTATGTATC
Found at i:2440802 original size:21 final size:19
Alignment explanation
Indices: 2440755--2440809 Score: 65
Period size: 19 Copynumber: 2.8 Consensus size: 19
2440745 ATTTCAACAA
2440755 TTTGTATCGATACAACACT
1 TTTGTATCGATACAACACT
* **
2440774 TATGTATCGATACATTTACT
1 TTTGTATCGATACA-ACACT
2440794 GTTTGTATCGATACAA
1 -TTTGTATCGATACAA
2440810 ATTGTTGAAA
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
19 13 0.45
20 3 0.10
21 13 0.45
ACGTcount: A:0.31, C:0.16, G:0.13, T:0.40
Consensus pattern (19 bp):
TTTGTATCGATACAACACT
Found at i:2443466 original size:21 final size:19
Alignment explanation
Indices: 2443419--2443473 Score: 65
Period size: 19 Copynumber: 2.8 Consensus size: 19
2443409 ATTTCAACAA
2443419 TTTGTATCGATACAACACT
1 TTTGTATCGATACAACACT
* **
2443438 TATGTATCGATACATTTACT
1 TTTGTATCGATACA-ACACT
2443458 GTTTGTATCGATACAA
1 -TTTGTATCGATACAA
2443474 ATTGTTGAAA
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
19 13 0.45
20 3 0.10
21 13 0.45
ACGTcount: A:0.31, C:0.16, G:0.13, T:0.40
Consensus pattern (19 bp):
TTTGTATCGATACAACACT
Found at i:2453390 original size:13 final size:13
Alignment explanation
Indices: 2453372--2453397 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
2453362 CAATTTTTGG
2453372 TGTATCGATACAT
1 TGTATCGATACAT
2453385 TGTATCGATACAT
1 TGTATCGATACAT
2453398 ACTTGGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:2453409 original size:32 final size:33
Alignment explanation
Indices: 2453352--2453415 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 33
2453342 TACAAGCCAA
**
2453352 TGTATCGATACAATTTTTGGTGTATCGATACAT
1 TGTATCGATACAATACTTGGTGTATCGATACAT
2453385 TGTATCGATAC-ATACTTGGTGTATCGATACA
1 TGTATCGATACAATACTTGGTGTATCGATACA
2453416 AGTTTGGCTA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 18 0.62
33 11 0.38
ACGTcount: A:0.28, C:0.14, G:0.19, T:0.39
Consensus pattern (33 bp):
TGTATCGATACAATACTTGGTGTATCGATACAT
Found at i:2453422 original size:19 final size:18
Alignment explanation
Indices: 2453352--2453422 Score: 62
Period size: 19 Copynumber: 4.0 Consensus size: 18
2453342 TACAAGCCAA
2453352 TGTATCGATACAATTTTTGG
1 TGTATCGATACAA--TTTGG
2453372 TGTATCGATAC-A--T--
1 TGTATCGATACAATTTGG
*
2453385 TGTATCGATACATACTTGG
1 TGTATCGATACA-ATTTGG
2453404 TGTATCGATACAAGTTTGG
1 TGTATCGATACAA-TTTGG
2453423 CTACTGCCAA
Statistics
Matches: 43, Mismatches: 1, Indels: 15
0.73 0.02 0.25
Matches are distributed among these distances:
13 11 0.26
15 2 0.05
17 1 0.02
18 1 0.02
19 17 0.40
20 11 0.26
ACGTcount: A:0.27, C:0.13, G:0.21, T:0.39
Consensus pattern (18 bp):
TGTATCGATACAATTTGG
Found at i:2455968 original size:13 final size:13
Alignment explanation
Indices: 2455950--2455975 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
2455940 ATAATCACCC
2455950 TGTATCGATACAA
1 TGTATCGATACAA
2455963 TGTATCGATACAA
1 TGTATCGATACAA
2455976 AGAAAAATGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:2459897 original size:21 final size:21
Alignment explanation
Indices: 2459868--2459912 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
2459858 AAGTTTTTAT
*
2459868 TTTTCTTAGCTAAC-TCATTA
1 TTTTCTTAGCCAACTTCATTA
*
2459888 TTTTCATTAGCCAACTTCTTTA
1 TTTTC-TTAGCCAACTTCATTA
2459910 TTT
1 TTT
2459913 CAACTTGCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 8 0.38
22 8 0.38
ACGTcount: A:0.22, C:0.20, G:0.04, T:0.53
Consensus pattern (21 bp):
TTTTCTTAGCCAACTTCATTA
Found at i:2463011 original size:22 final size:22
Alignment explanation
Indices: 2462966--2463027 Score: 67
Period size: 22 Copynumber: 2.9 Consensus size: 22
2462956 GTTGCTGCCA
* *
2462966 TGCTCATGGAGTTGCTGCTGGT
1 TGCTCATGGAATTGCTGCTAGT
2462988 TGCTCATGGAATTGCTG-TCAGT
1 TGCTCATGGAATTGCTGCT-AGT
*
2463010 TGCTCGTGGAA--GCTGCTA
1 TGCTCATGGAATTGCTGCTA
2463028 CTGCCATGGA
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
20 5 0.14
21 2 0.06
22 28 0.80
ACGTcount: A:0.15, C:0.19, G:0.32, T:0.34
Consensus pattern (22 bp):
TGCTCATGGAATTGCTGCTAGT
Found at i:2463121 original size:47 final size:47
Alignment explanation
Indices: 2463009--2463107 Score: 153
Period size: 47 Copynumber: 2.1 Consensus size: 47
2462999 TTGCTGTCAG
* * *
2463009 TTGCTCGTGGAAGCTGCTACTGCCATGGAAGCTAGAGTTGTTGCCGA
1 TTGCTCGTGGAAACTGCTTCTGCCATGGAAGCTAGAGTTGCTGCCGA
* *
2463056 TTGCTCGTGGAAACTGCTTCTGCCATGGAAGCTGGAGTTGCTGCCGG
1 TTGCTCGTGGAAACTGCTTCTGCCATGGAAGCTAGAGTTGCTGCCGA
2463103 TTGCT
1 TTGCT
2463108 GGTGTTGATT
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 47 1.00
ACGTcount: A:0.16, C:0.22, G:0.32, T:0.29
Consensus pattern (47 bp):
TTGCTCGTGGAAACTGCTTCTGCCATGGAAGCTAGAGTTGCTGCCGA
Found at i:2463760 original size:20 final size:20
Alignment explanation
Indices: 2463737--2463780 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
2463727 ATAATTTTTT
2463737 TTTTACTTTCATTATTTTAC
1 TTTTACTTTCATTATTTTAC
* * *
2463757 TTTTATTTTTATTTTTTTAC
1 TTTTACTTTCATTATTTTAC
2463777 TTTT
1 TTTT
2463781 GATTTCTACT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.16, C:0.09, G:0.00, T:0.75
Consensus pattern (20 bp):
TTTTACTTTCATTATTTTAC
Found at i:2465931 original size:13 final size:13
Alignment explanation
Indices: 2465913--2465938 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
2465903 ACATATCCAG
2465913 ATGTATTGATACA
1 ATGTATTGATACA
2465926 ATGTATTGATACA
1 ATGTATTGATACA
2465939 TGCTCATTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.08, G:0.15, T:0.38
Consensus pattern (13 bp):
ATGTATTGATACA
Found at i:2465955 original size:19 final size:20
Alignment explanation
Indices: 2465927--2465979 Score: 81
Period size: 19 Copynumber: 2.7 Consensus size: 20
2465917 ATTGATACAA
2465927 TGTATTGATACATGCTC-AT
1 TGTATTGATACATGCTCAAT
* *
2465946 TGTATCGATACATTCTCAAT
1 TGTATTGATACATGCTCAAT
2465966 TGTATTGATACATG
1 TGTATTGATACATG
2465980 AAACTGGTAG
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
19 15 0.52
20 14 0.48
ACGTcount: A:0.28, C:0.15, G:0.15, T:0.42
Consensus pattern (20 bp):
TGTATTGATACATGCTCAAT
Found at i:2470016 original size:20 final size:20
Alignment explanation
Indices: 2469969--2470020 Score: 68
Period size: 20 Copynumber: 2.6 Consensus size: 20
2469959 ATTTTCACAA
* *
2469969 ATTGTATTGATACATTGTTC
1 ATTGTATCGATACATTATTC
*
2469989 ATTGTATCGATACATTATTT
1 ATTGTATCGATACATTATTC
*
2470009 ATTTTATCGATA
1 ATTGTATCGATA
2470021 TATTGTATCG
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.29, C:0.10, G:0.12, T:0.50
Consensus pattern (20 bp):
ATTGTATCGATACATTATTC
Found at i:2471238 original size:44 final size:44
Alignment explanation
Indices: 2471188--2471280 Score: 168
Period size: 44 Copynumber: 2.1 Consensus size: 44
2471178 CTTCCATAAA
*
2471188 AATGTCATCTTGGTTCATGCATTTCTATCCTCTATGACATATAT
1 AATGTCATCTTGGTTCATGCATTTCTATCCTCCATGACATATAT
2471232 AATGTCATCTTGGTTCATGCATTTCTATCCTCCATGACATATAT
1 AATGTCATCTTGGTTCATGCATTTCTATCCTCCATGACATATAT
*
2471276 TATGT
1 AATGT
2471281 TTGCTACATG
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
44 47 1.00
ACGTcount: A:0.25, C:0.20, G:0.12, T:0.43
Consensus pattern (44 bp):
AATGTCATCTTGGTTCATGCATTTCTATCCTCCATGACATATAT
Found at i:2472561 original size:79 final size:79
Alignment explanation
Indices: 2472426--2472618 Score: 264
Period size: 79 Copynumber: 2.4 Consensus size: 79
2472416 TTTTCATCTC
* * * *
2472426 GGGGATACTCCAACCTCGATTTTATTTCCAAAACATCAATTTGTCATCATCAGGGATACTACAAC
1 GGGGATACTCCAACCCCGGTTTTATTTCTAAAACATCAATTTCTCATCATCAGGGATACTACAAC
2472491 CCCGTTA-TTTCTGA
66 CCCGTTATTTTC-GA
* * * ** *
2472505 GGGGATACTCCAACCCCGGCTTTATTTCTAAAATATTAATTTCTCA-CAATTGGGGATACTCCAA
1 GGGGATACTCCAACCCCGGTTTTATTTCTAAAACATCAATTTCTCATC-ATCAGGGATACTACAA
2472569 CCCCGTTATTTTCGA
65 CCCCGTTATTTTCGA
2472584 GGGGATACTCCAACCCCGGTTTTATTTCTAAAACA
1 GGGGATACTCCAACCCCGGTTTTATTTCTAAAACA
2472619 CCCATTTTCC
Statistics
Matches: 100, Mismatches: 12, Indels: 4
0.86 0.10 0.03
Matches are distributed among these distances:
78 1 0.01
79 95 0.95
80 4 0.04
ACGTcount: A:0.28, C:0.25, G:0.15, T:0.32
Consensus pattern (79 bp):
GGGGATACTCCAACCCCGGTTTTATTTCTAAAACATCAATTTCTCATCATCAGGGATACTACAAC
CCCGTTATTTTCGA
Found at i:2472639 original size:79 final size:78
Alignment explanation
Indices: 2472426--2472648 Score: 263
Period size: 79 Copynumber: 2.8 Consensus size: 78
2472416 TTTTCATCTC
* * * * * *
2472426 GGGGATACTCCAACCTCGATTTTATTTCCAAAACATCAATTTGT-CATCATCAGGGATACTACAA
1 GGGGATACTCCAACCCCGGTTTTATTTCTAAAACA-CAATTT-TCCATAATCGGGGATACTCCAA
2472490 CCCCGTTATTTCTGA
64 CCCCGTTATTTCTGA
* * * * *
2472505 GGGGATACTCCAACCCCGGCTTTATTTCTAAAATATTAA-TTTCTCACAATTGGGGATACTCCAA
1 GGGGATACTCCAACCCCGGTTTTATTTCTAAAACA-CAATTTTC-CATAATCGGGGATACTCCAA
2472569 CCCCGTTATTT-TCGA
64 CCCCGTTATTTCT-GA
*
2472584 GGGGATACTCCAACCCCGGTTTTATTTCTAAAACACCCATTTTCCATAATCGGGGATACTCCAAC
1 GGGGATACTCCAACCCCGGTTTTATTTCTAAAACA-CAATTTTCCATAATCGGGGATACTCCAAC
2472649 TTCGATTTTA
Statistics
Matches: 122, Mismatches: 18, Indels: 8
0.82 0.12 0.05
Matches are distributed among these distances:
77 1 0.01
78 3 0.02
79 114 0.93
80 4 0.03
ACGTcount: A:0.28, C:0.26, G:0.15, T:0.31
Consensus pattern (78 bp):
GGGGATACTCCAACCCCGGTTTTATTTCTAAAACACAATTTTCCATAATCGGGGATACTCCAACC
CCGTTATTTCTGA
Found at i:2472647 original size:51 final size:51
Alignment explanation
Indices: 2472584--2472703 Score: 161
Period size: 51 Copynumber: 2.4 Consensus size: 51
2472574 TTATTTTCGA
* *
2472584 GGGGATACTCCAACCCCGGTTTTA-TTTCTAAAACACCCATTTTCCATAATC
1 GGGGATACTCCAACCCCGATTTTATTTTC-AAAACACCCATTTTCCACAATC
** * *
2472635 GGGGATACTCCAACTTCGATTTTATTTTCAAAACACCGATTTTTCACAATC
1 GGGGATACTCCAACCCCGATTTTATTTTCAAAACACCCATTTTCCACAATC
*
2472686 GGAGATACTCCAACCCCG
1 GGGGATACTCCAACCCCG
2472704 TTATTTTCGA
Statistics
Matches: 59, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
51 55 0.93
52 4 0.07
ACGTcount: A:0.28, C:0.28, G:0.13, T:0.30
Consensus pattern (51 bp):
GGGGATACTCCAACCCCGATTTTATTTTCAAAACACCCATTTTCCACAATC
Found at i:2472821 original size:130 final size:129
Alignment explanation
Indices: 2472550--2472810 Score: 305
Period size: 130 Copynumber: 2.0 Consensus size: 129
2472540 TTAATTTCTC
* * *
2472550 ACAATTGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGTTTTATTTCTAA
1 ACAATCGGAGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGATTTTATTTCTAA
* * * * * * **
2472615 AACACCCATTTTCCATAATCGGGGATACTCCAACTTCGATTTTATTTTCAAAACACCGATTTTT
66 AACACCCATTTTCCATAATAGGGGATACTCAAACCTCGATTTCATCTCCAAAACACAAATTTTT
2472679 CACAATCGGAGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGATTTTA-TTCTC
1 -ACAATCGGAGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGATTTTATTTCT-
* * *
2472743 AAAACATCGA-TTTCCTATAAGTAGGGGATACTCAAACC-CTG-TTGTCATCTCCAAAATATCAA
64 AAAACACCCATTTTCC-ATAA-TAGGGGATACTCAAACCTC-GATT-TCATCTCCAAAACA-CAA
2472805 ATTTTT
124 ATTTTT
2472811 CGTCGGGAGA
Statistics
Matches: 111, Mismatches: 14, Indels: 10
0.82 0.10 0.07
Matches are distributed among these distances:
129 9 0.08
130 70 0.63
131 25 0.23
132 7 0.06
ACGTcount: A:0.29, C:0.26, G:0.14, T:0.32
Consensus pattern (129 bp):
ACAATCGGAGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGATTTTATTTCTAA
AACACCCATTTTCCATAATAGGGGATACTCAAACCTCGATTTCATCTCCAAAACACAAATTTTT
Found at i:2481655 original size:49 final size:49
Alignment explanation
Indices: 2481598--2481703 Score: 178
Period size: 49 Copynumber: 2.2 Consensus size: 49
2481588 TAAAAAAAAA
2481598 CATGGAATGATGGGCATGGAATAAAAAAATGAAGGCAT-AATATGATGGG
1 CATGGAATGATGGGCATGGAATAAAAAAATGAAGGCATGAA-ATGATGGG
* *
2481647 CATGGAATGATGGGCATGGAATATAAAAATGAAGGCATGGAATGATGGG
1 CATGGAATGATGGGCATGGAATAAAAAAATGAAGGCATGAAATGATGGG
2481696 CATGGAAT
1 CATGGAAT
2481704 ATAAAAATGA
Statistics
Matches: 54, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
49 53 0.98
50 1 0.02
ACGTcount: A:0.41, C:0.07, G:0.32, T:0.21
Consensus pattern (49 bp):
CATGGAATGATGGGCATGGAATAAAAAAATGAAGGCATGAAATGATGGG
Found at i:2481656 original size:14 final size:14
Alignment explanation
Indices: 2481639--2481668 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
2481629 AAGGCATAAT
2481639 ATGATGGGCATGGA
1 ATGATGGGCATGGA
2481653 ATGATGGGCATGGA
1 ATGATGGGCATGGA
2481667 AT
1 AT
2481669 ATAAAAATGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.30, C:0.07, G:0.40, T:0.23
Consensus pattern (14 bp):
ATGATGGGCATGGA
Found at i:2481684 original size:21 final size:21
Alignment explanation
Indices: 2481659--2481724 Score: 74
Period size: 21 Copynumber: 3.5 Consensus size: 21
2481649 TGGAATGATG
2481659 GGCATGGAATATAAAAATGAA
1 GGCATGGAATATAAAAATGAA
*
2481680 GGCATGG-A-AT---GATG--
1 GGCATGGAATATAAAAATGAA
2481694 GGCATGGAATATAAAAATGAA
1 GGCATGGAATATAAAAATGAA
2481715 GGCATGGAAT
1 GGCATGGAAT
2481725 GATGGGCATG
Statistics
Matches: 36, Mismatches: 2, Indels: 14
0.69 0.04 0.27
Matches are distributed among these distances:
14 7 0.19
15 1 0.03
16 5 0.14
19 5 0.14
20 1 0.03
21 17 0.47
ACGTcount: A:0.44, C:0.06, G:0.30, T:0.20
Consensus pattern (21 bp):
GGCATGGAATATAAAAATGAA
Found at i:2481684 original size:35 final size:35
Alignment explanation
Indices: 2481645--2481773 Score: 224
Period size: 35 Copynumber: 3.7 Consensus size: 35
2481635 TAATATGATG
2481645 GGCATGGAATGATGGGCATGGAATATAAAAATGAA
1 GGCATGGAATGATGGGCATGGAATATAAAAATGAA
2481680 GGCATGGAATGATGGGCATGGAATATAAAAATGAA
1 GGCATGGAATGATGGGCATGGAATATAAAAATGAA
*
2481715 GGCATGGAATGATGGGCATGGAATAAAAAAATGAA
1 GGCATGGAATGATGGGCATGGAATATAAAAATGAA
*
2481750 GGCAT-AATATGATGGGCATGGAAT
1 GGCATGGA-ATGATGGGCATGGAAT
2481774 GATGGATAAA
Statistics
Matches: 91, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
34 1 0.01
35 90 0.99
ACGTcount: A:0.42, C:0.06, G:0.32, T:0.20
Consensus pattern (35 bp):
GGCATGGAATGATGGGCATGGAATATAAAAATGAA
Found at i:2481768 original size:84 final size:84
Alignment explanation
Indices: 2481598--2481778 Score: 208
Period size: 84 Copynumber: 2.2 Consensus size: 84
2481588 TAAAAAAAAA
*****
2481598 CATGGAATGATGGGCATGGAATAAAAAAATGAAGGCATAATATGATGGGCATGGAATGATGGGCA
1 CATGGAATGATGGGCATGGAATAAAAAAATGAAGGCATAATATGATGGGCATGGAATGAAAAAAA
*
2481663 TGGAATATAAAAATGAAGG
66 TGGAACATAAAAATGAAGG
* *
2481682 CATGGAATGATGGGCATGGAATATAAAAATGAAGGCATGGA-ATGATGGGCATGGAAT-AAAAAA
1 CATGGAATGATGGGCATGGAATAAAAAAATGAAGGCAT-AATATGATGGGCATGGAATGAAAAAA
* *
2481745 AT-GAAGGCAT-AATATGATGGG
65 ATGGAA--CATAAAAATGA-AGG
2481766 CATGGAATGATGG
1 CATGGAATGATGG
2481779 ATAAAAATGA
Statistics
Matches: 83, Mismatches: 10, Indels: 8
0.82 0.10 0.08
Matches are distributed among these distances:
82 3 0.04
83 9 0.11
84 70 0.84
85 1 0.01
ACGTcount: A:0.42, C:0.06, G:0.31, T:0.20
Consensus pattern (84 bp):
CATGGAATGATGGGCATGGAATAAAAAAATGAAGGCATAATATGATGGGCATGGAATGAAAAAAA
TGGAACATAAAAATGAAGG
Found at i:2483089 original size:79 final size:79
Alignment explanation
Indices: 2482989--2483287 Score: 472
Period size: 79 Copynumber: 3.8 Consensus size: 79
2482979 GTTAAGTTTC
* *
2482989 TCAATTTTTCACAATCGGGGATACTCCAATCCCGTTATTTCCGAGGGGATACTCCAACTCCGGTT
1 TCAATTTTTCACAATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGGTT
*
2483054 TTATCTCTAAAACA
66 TTATTTCTAAAACA
* * *
2483068 TCAAATTTTCATAATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGTT
1 TCAATTTTTCACAATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGGTT
* *
2483133 TTATTTCCAAAATA
66 TTATTTCTAAAACA
* ** *
2483147 TTAATTTTTCACAATTAGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGGCT
1 TCAATTTTTCACAATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGGTT
2483212 TTATTTCTAAAACA
66 TTATTTCTAAAACA
* *
2483226 TCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTCCAAGGGGATACTCCAACCCCG
1 TCAATTTTTCACAATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCG
2483288 TTATTTCTGA
Statistics
Matches: 198, Mismatches: 22, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
79 198 1.00
ACGTcount: A:0.27, C:0.27, G:0.15, T:0.31
Consensus pattern (79 bp):
TCAATTTTTCACAATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGGTT
TTATTTCTAAAACA
Found at i:2483282 original size:28 final size:28
Alignment explanation
Indices: 2483242--2483312 Score: 124
Period size: 28 Copynumber: 2.5 Consensus size: 28
2483232 TTTCATAATC
2483242 GGGGATACTCCAACCCCGTTATTTCCAA
1 GGGGATACTCCAACCCCGTTATTTCCAA
**
2483270 GGGGATACTCCAACCCCGTTATTTCTGA
1 GGGGATACTCCAACCCCGTTATTTCCAA
2483298 GGGGATACTCCAACC
1 GGGGATACTCCAACC
2483313 TCGGTTGTAT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 41 1.00
ACGTcount: A:0.24, C:0.31, G:0.21, T:0.24
Consensus pattern (28 bp):
GGGGATACTCCAACCCCGTTATTTCCAA
Found at i:2483283 original size:107 final size:107
Alignment explanation
Indices: 2483164--2483394 Score: 392
Period size: 107 Copynumber: 2.2 Consensus size: 107
2483154 TTCACAATTA
*
2483164 GGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGGCTT-TATTTCTAAAACATC
1 GGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGG-TTGTATCTCTAAAACATC
*
2483228 AATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTCCAAG
65 AATTTTTCATAATCAGGGATACTCCAACCCCGTTATTTCCAAG
* *
2483271 GGGATACTCCAACCCCGTTATTTCTGAGGGGATACTCCAACCTCGGTTGTATCTCTAAAACATCA
1 GGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGGTTGTATCTCTAAAACATCA
* *
2483336 ATTTTTCATAATCAGGGATACTCCAACCCCGTTATTTTCGAG
66 ATTTTTCATAATCAGGGATACTCCAACCCCGTTATTTCCAAG
2483378 GGGATACTCCAACCCCG
1 GGGATACTCCAACCCCG
2483395 GTTTTATTTC
Statistics
Matches: 117, Mismatches: 6, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
106 2 0.02
107 115 0.98
ACGTcount: A:0.26, C:0.29, G:0.17, T:0.29
Consensus pattern (107 bp):
GGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGGTTGTATCTCTAAAACATCA
ATTTTTCATAATCAGGGATACTCCAACCCCGTTATTTCCAAG
Found at i:2483341 original size:186 final size:186
Alignment explanation
Indices: 2483084--2483472 Score: 636
Period size: 186 Copynumber: 2.1 Consensus size: 186
2483074 TTTCATAATC
* * * *
2483084 GGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGTTTTATTTCCAAAATATT
1 GGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGTTGTATCTCCAAAACATC
*
2483149 AATTTTTCACAATTAGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGGCTTT
66 AATTTTTCACAATCAGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGGCTTT
2483214 ATTTCTAAAACATCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTCCAA
131 ATTTCTAAAACATCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTCCAA
* *
2483270 GGGGATACTCCAACCCCGTTA-TTTCTGAGGGGATACTCCAACCTCGGTTGTATCTCTAAAACAT
1 GGGGATACTCCAACCCCGTTATTTTC-GAGGGGATACTCCAACCCCGGTTGTATCTCCAAAACAT
* * *
2483334 CAATTTTTCATAATCAGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGTTT
65 CAATTTTTCACAATCAGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGGCTT
* * *
2483399 TATTTCTAAAATATTAATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTCCGA
130 TATTTCTAAAACATCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTCCAA
*
2483456 GGGAATACTCCAACCCC
1 GGGGATACTCCAACCCC
2483473 AGTTTTATTT
Statistics
Matches: 188, Mismatches: 14, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
185 4 0.02
186 184 0.98
ACGTcount: A:0.27, C:0.27, G:0.16, T:0.31
Consensus pattern (186 bp):
GGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGTTGTATCTCCAAAACATC
AATTTTTCACAATCAGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGGCTTT
ATTTCTAAAACATCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTCCAA
Found at i:2483354 original size:79 final size:79
Alignment explanation
Indices: 2483270--2483840 Score: 892
Period size: 79 Copynumber: 7.2 Consensus size: 79
2483260 TTATTTCCAA
* * *
2483270 GGGGATACTCCAACCCCGTTA-TTTCTGAGGGGATACTCCAACCTCGGTTGTATCTCTAAAACAT
1 GGGGATACTCCAACCCCGTTATTTTC-GAGGGGATACTCCAACCCCGGTTTTATTTCTAAAACAT
2483334 CAATTTTTCATAATC
65 CAATTTTTCATAATC
* * *
2483349 AGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGTTTTATTTCTAAAATATT
1 GGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGTTTTATTTCTAAAACATC
2483414 AATTTTTCATAATC
66 AATTTTTCATAATC
* * * *
2483428 GGGGATACTCCAACCCCGTTATTTCCGAGGGAATACTCCAACCCCAGTTTTATTTCTAAAACACC
1 GGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGTTTTATTTCTAAAACATC
2483493 AATTTTTCATAATC
66 AATTTTTCATAATC
* *
2483507 GGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGATTTTATCTCTAAAACATC
1 GGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGTTTTATTTCTAAAACATC
2483572 AATTTTTCATAATC
66 AATTTTTCATAATC
* * * * *
2483586 GGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCTAACCTCGATTTTATTTCTAAAATATT
1 GGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGTTTTATTTCTAAAACATC
*
2483651 AATTTTTCACAATC
66 AATTTTTCATAATC
* * * * *
2483665 GGGGATACTCCAACCCCGTTATTTTTGAGAGGATACTTCAATCCCGGTTTTATTTCTAAAACACC
1 GGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGTTTTATTTCTAAAACATC
2483730 AATTTTTCATAATC
66 AATTTTTCATAATC
* *
2483744 GAGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCAGTTTTATTTCTAAAACATC
1 GGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGTTTTATTTCTAAAACATC
2483809 AATTTTTCATAATC
66 AATTTTTCATAATC
*
2483823 GGGGATACTCTAACCCCG
1 GGGGATACTCCAACCCCG
2483841 ATTTTATTTT
Statistics
Matches: 446, Mismatches: 45, Indels: 2
0.90 0.09 0.00
Matches are distributed among these distances:
79 442 0.99
80 4 0.01
ACGTcount: A:0.28, C:0.25, G:0.14, T:0.33
Consensus pattern (79 bp):
GGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGTTTTATTTCTAAAACATC
AATTTTTCATAATC
Found at i:2483482 original size:265 final size:265
Alignment explanation
Indices: 2483005--2483552 Score: 945
Period size: 265 Copynumber: 2.1 Consensus size: 265
2482995 TTTCACAATC
* *
2483005 GGGGATACTCCAATCCCGTTATTTCCGAGGGGATACTCCAACTCCGGTTTTATCTCTAAAACATC
1 GGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACTCCGGTTGTATCTCTAAAACATC
*
2483070 AAATTTTCATAATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGTTTT
66 AAATTTTCATAATCAGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGTTTT
* *
2483135 ATTTCCAAAATATTAATTTTTCACAATTAGGGATACTCCAACCCCGTTATTTCCGAGGGGATACT
131 ATTTCCAAAATATTAATTTTTCACAATCAGGGATACTCCAACCCCGTTATTTCCGAGGGAATACT
* *
2483200 CCAACCCCGGCTTTATTTCTAAAACATCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATT
196 CCAACCCCAGCTTTATTTCTAAAACACCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATT
2483265 TCCAA
261 TCCAA
*
2483270 GGGGATACTCCAACCCCGTTATTTCTGAGGGGATACTCCAAC-CTCGGTTGTATCTCTAAAACAT
1 GGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACTC-CGGTTGTATCTCTAAAACAT
*
2483334 CAATTTTTCATAATCAGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGTTT
65 CAAATTTTCATAATCAGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGTTT
* * *
2483399 TATTTCTAAAATATTAATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTCCGAGGGAATAC
130 TATTTCCAAAATATTAATTTTTCACAATCAGGGATACTCCAACCCCGTTATTTCCGAGGGAATAC
*
2483464 TCCAACCCCAGTTTTATTTCTAAAACACCAATTTTTCATAATCGGGGATACTCCAACCCCGTTAT
195 TCCAACCCCAGCTTTATTTCTAAAACACCAATTTTTCATAATCGGGGATACTCCAACCCCGTTAT
* *
2483529 TTTCGA
260 TTCCAA
2483535 GGGGATACTCCAACCCCG
1 GGGGATACTCCAACCCCG
2483553 ATTTTATCTC
Statistics
Matches: 267, Mismatches: 15, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
264 1 0.00
265 266 1.00
ACGTcount: A:0.27, C:0.26, G:0.16, T:0.31
Consensus pattern (265 bp):
GGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACTCCGGTTGTATCTCTAAAACATC
AAATTTTCATAATCAGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGTTTT
ATTTCCAAAATATTAATTTTTCACAATCAGGGATACTCCAACCCCGTTATTTCCGAGGGAATACT
CCAACCCCAGCTTTATTTCTAAAACACCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATT
TCCAA
Found at i:2483838 original size:51 final size:50
Alignment explanation
Indices: 2483772--2483918 Score: 161
Period size: 52 Copynumber: 2.8 Consensus size: 50
2483762 TTATTTTCGA
*
2483772 GGGGATACTCCAACCCCAGTTTTATTTCTAAAACATCAATTTTT-CATAATC
1 GGGGATACTCTAACCCC-GTTTTATTTCTAAAACA-CAATTTTTCCATAATC
* * **
2483823 GGGGATACTCTAACCCCGATTTTATTTTTTAGAACACCGTTTTTCCATAATC
1 GGGGATACTCTAACCCCG-TTTTA-TTTCTAAAACACAATTTTTCCATAATC
* * *
2483875 GGGGATACTCTAGCCCCGTTGTTATCTCTAAAATACTAATTTTT
1 GGGGATACTCTAACCCCGTT-TTATTTCTAAAACAC-AATTTTT
2483919 TTTCTCGTCA
Statistics
Matches: 79, Mismatches: 12, Indels: 9
0.79 0.12 0.09
Matches are distributed among these distances:
50 1 0.01
51 37 0.47
52 41 0.52
ACGTcount: A:0.27, C:0.22, G:0.13, T:0.37
Consensus pattern (50 bp):
GGGGATACTCTAACCCCGTTTTATTTCTAAAACACAATTTTTCCATAATC
Found at i:2490046 original size:59 final size:60
Alignment explanation
Indices: 2489932--2490111 Score: 249
Period size: 60 Copynumber: 3.0 Consensus size: 60
2489922 ACCTTTCTTC
* * * *
2489932 AAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAAGACGCCTTCTCCTTTT
1 AAAGCCCACACAAGTTGGTGGCAC-CTTCAGTCCTCAAAAAGCAGGACGCTTTCTCCTTTT
* *
2489993 -AAGCCCACACAAGTTGGTGGCACCTTCAGTCCTCAAAAAGTAGGACGCTTTCTCTTTTT
1 AAAGCCCACACAAGTTGGTGGCACCTTCAGTCCTCAAAAAGCAGGACGCTTTCTCCTTTT
2490052 AAAGCCCACACAAGTTGGTGGCA-CTTCCTAGTCCTCAAAAAGCAGGACG-TTCTCTCCTTT
1 AAAGCCCACACAAGTTGGTGGCACCTT-C-AGTCCTCAAAAAGCAGGACGCTT-TCTCCTTT
2490112 CGCCTTTTTG
Statistics
Matches: 107, Mismatches: 8, Indels: 8
0.87 0.07 0.07
Matches are distributed among these distances:
59 33 0.31
60 48 0.45
61 26 0.24
ACGTcount: A:0.26, C:0.29, G:0.18, T:0.27
Consensus pattern (60 bp):
AAAGCCCACACAAGTTGGTGGCACCTTCAGTCCTCAAAAAGCAGGACGCTTTCTCCTTTT
Found at i:2490181 original size:55 final size:54
Alignment explanation
Indices: 2490121--2490482 Score: 418
Period size: 55 Copynumber: 6.4 Consensus size: 54
2490111 TCGCCTTTTT
*
2490121 GTCCTCAAAGAGCAAGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACTTTTCA
1 GTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCAC-TTTCA
* * *
2490176 TTCCTCAAAGAGCAGGACGCCTTCTCCTTTTAAGCCCACACAAGTTGGTGGCACCTTCA
1 GTCCTCAAAGAGCAGGACGCCTT-T-C---AAAGCCCACACAAGTTGGTGGCACTTTCA
* * * **
2490235 GTCCTCAAAGAGCAAGATGCTTTCTTTTTAAAGCCCACACAAGTTGGTGGCACTTTTTT
1 GTCCTCAAAGAGCAGGACGC---C-TTTCAAAGCCCACACAAGTTGGTGGCAC-TTTCA
*
2490294 GTCCTCAAAGAGCAGGACGCCGTTCAAAGCCCACACAAGTTGGTGGCACCTTTCA
1 GTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA-CTTTCA
* * *
2490349 GTCTTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCA
1 GTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACTTTCA
* * *
2490403 GTCCTCAAAGAGCAGGATGCTTTCTTTTTTAAAGCCCACACAAGTTGGTGGCACTTCCTA
1 GTCCTCAAAGAGCAGGACGC---C--TTTCAAAGCCCACACAAGTTGGTGGCACTTTC-A
2490463 GTCCTCAAAGAGCAGGACGC
1 GTCCTCAAAGAGCAGGACGC
2490483 TCTCTCCTTT
Statistics
Matches: 263, Mismatches: 27, Indels: 29
0.82 0.08 0.09
Matches are distributed among these distances:
54 23 0.09
55 94 0.36
56 3 0.01
57 2 0.01
58 23 0.09
59 71 0.27
60 43 0.16
62 2 0.01
63 2 0.01
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (54 bp):
GTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACTTTCA
Found at i:2490443 original size:114 final size:113
Alignment explanation
Indices: 2490121--2490482 Score: 468
Period size: 114 Copynumber: 3.2 Consensus size: 113
2490111 TCGCCTTTTT
* *
2490121 GTCCTCAAAGAGCAAGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACTTTTCATTCCTCAAAG
1 GTCCTCAAAGAGCAAGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAG
2490186 AGCAGGACGCCTTCTCCTTTT-AAGCCCACACAAGTTGGTGGCACC-TTCA
66 AGCAGGACG-CTTCT--TTTTAAAGCCCACACAAGTTGGTGGCACCTTTCA
* **
2490235 GTCCTCAAAGAGCAAGATGCTTTCTTTTTAAAGCCCACACAAGTTGGTGGCACTTTTTTGTCCTC
1 GTCCTCAAAGAGCAAGACGC---C-TTTTAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTC
* *
2490300 AAAGAGCAGGACGC--C-GTTCAAAGCCCACACAAGTTGGTGGCACCTTTCA
62 AAAGAGCAGGACGCTTCTTTTTAAAGCCCACACAAGTTGGTGGCACCTTTCA
* * *
2490349 GTCTTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCAC-CTTCAGTCCTCAAAG
1 GTCCTCAAAGAGCAAGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAG
* *
2490413 AGCAGGATGCTTTCTTTTTTAAAGCCCACACAAGTTGGTGGCA-CTTCCTA
66 AGCAGGACGC-TTC-TTTTTAAAGCCCACACAAGTTGGTGGCACCTTTC-A
*
2490463 GTCCTCAAAGAGCAGGACGC
1 GTCCTCAAAGAGCAAGACGC
2490483 TCTCTCCTTT
Statistics
Matches: 218, Mismatches: 18, Indels: 24
0.84 0.07 0.09
Matches are distributed among these distances:
109 21 0.10
110 28 0.13
111 1 0.00
112 3 0.01
113 28 0.13
114 85 0.39
115 1 0.00
117 2 0.01
118 49 0.22
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (113 bp):
GTCCTCAAAGAGCAAGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAG
AGCAGGACGCTTCTTTTTAAAGCCCACACAAGTTGGTGGCACCTTTCA
Found at i:2490620 original size:153 final size:153
Alignment explanation
Indices: 2490353--2490629 Score: 495
Period size: 153 Copynumber: 1.8 Consensus size: 153
2490343 CTTTCAGTCT
2490353 TCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCAGTCCTCAAAGAGCAG
1 TCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCAGTCCTCAAAGAGCAG
2490418 GATGCTTTCTTTTTTAAAGCCCACACAAGTTGGTGGCACTTCCTAGTCCTCAAAGAGCAGGACGC
66 GATGCTTTCTTTTTTAAAGCCCACACAAGTTGGTGGCACTTCCTAGTCCTCAAAGAGCAGGACGC
2490483 TCTCTCCTTTCGCCTTTTTGTCC
131 TCTCTCCTTTCGCCTTTTTGTCC
* *
2490506 TCAAGGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCA
1 TCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCAC-CTTCAGTCCTCAAAGAGCA
*
2490571 GGATGCTTTC-TTTTTAAAGCCCACACAAGTTGGTGGCACTT-TTCAGTCCTCAAAGAGCA
65 GGATGCTTTCTTTTTTAAAGCCCACACAAGTTGGTGGCACTTCCT-AGTCCTCAAAGAGCA
2490630 AGATGCTTTC
Statistics
Matches: 119, Mismatches: 3, Indels: 4
0.94 0.02 0.03
Matches are distributed among these distances:
152 1 0.01
153 90 0.76
154 28 0.24
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.27
Consensus pattern (153 bp):
TCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCAGTCCTCAAAGAGCAG
GATGCTTTCTTTTTTAAAGCCCACACAAGTTGGTGGCACTTCCTAGTCCTCAAAGAGCAGGACGC
TCTCTCCTTTCGCCTTTTTGTCC
Found at i:2490638 original size:381 final size:389
Alignment explanation
Indices: 2489929--2490755 Score: 1280
Period size: 381 Copynumber: 2.1 Consensus size: 389
2489919 GCAACCTTTC
* *
2489929 TTCAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAAGACGCCTTCTCCTTTTA
1 TTCAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGACGCC-TCT-CTTTAA
*
2489994 AGCCCACACAAGTTGGTGGCACCTTCAGTCCTCAAAAAGTAGGACGCTTTCTCTTTTTAAAGCCC
64 AGCCCACACAAGTTGGTGGCACCTTCAGTCCTCAAAAAGCAGGACGCTTTCTCTTTTTAAAGCCC
*
2490059 ACACAAGTTGGTGGCACTTCCTAGTCCTCAAAAAGCAGGACGTTCTCTCCTTTCGCCTTTTTGTC
129 ACACAAGTTGGTGGCACTTCCTAGTCCTCAAAAAGCAGGACGCTCTCTCCTTTCGCCTTTTTGTC
*
2490124 CTCAAAGAGCAAGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACTTTTCATTCCTCAAAGAGC
194 CTCAAAGAGCAAGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGC
2490189 AGGACGCCTTCTCCTTTTAAGCCCACACAAGTTGGTGGCACCTTCAGTCCTCAAAGAGCAAGATG
259 AGGACGCCTTCTCCTTTTAAGCCCACACAAGTTGGTGGCACCTTCAGTCCTCAAAGAGCAAGATG
***
2490254 CTTTCTTTTT-AAAGCCCACACAAGTTGGTGGCA-CTTTTTTGTCCTCAAAGAGCAGGACG-C-C
324 CTTTCTTTTTCAAAGCCCACACAAGTTGGTGGCATC-TTCCAGTCCTCAAAGAGCAGGACGCCTC
2490315 -G
388 TG
* *
2490316 TTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCTTCAAAGAGCAGGACG-C-CT-TTTAAAG
1 TTCAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGACGCCTCTCTTTAAAG
* *
2490378 CCCACACAAGTTGGTGGCACCTTCAGTCCTCAAAGAGCAGGATGCTTTCT-TTTTTAAAGCCCAC
66 CCCACACAAGTTGGTGGCACCTTCAGTCCTCAAAAAGCAGGACGCTTTCTCTTTTTAAAGCCCAC
*
2490442 ACAAGTTGGTGGCACTTCCTAGTCCTCAAAGAGCAGGACGCTCTCTCCTTTCGCCTTTTTGTCCT
131 ACAAGTTGGTGGCACTTCCTAGTCCTCAAAAAGCAGGACGCTCTCTCCTTTCGCCTTTTTGTCCT
* * *
2490507 CAAGGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAG
196 CAAAGAGCAAGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAG
* * *
2490572 GATG-CTT-TCTTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAAGATG
261 GACGCCTTCTCCTTTT-AAGCCCACACAAGTTGGTGGCAC-CTTCAGTCCTCAAAGAGCAAGATG
* *
2490635 CTTTCTTTTTGCAAATCCCACACTAGTTGGTGGCATCTTCCAGTCCTCAAAGAGCAGGACGCCTT
324 CTTTCTTTTT-CAAAGCCCACACAAGTTGGTGGCATCTTCCAGTCCTCAAAGAGCAGGACG-C--
*
2490700 CTCTT
385 CTCTG
* *
2490705 TTCAAAGACCACACGAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGAC
1 TTCAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGAC
2490756 ACACTTCTTT
Statistics
Matches: 403, Mismatches: 26, Indels: 20
0.90 0.06 0.04
Matches are distributed among these distances:
379 6 0.01
380 26 0.06
381 174 0.43
382 53 0.13
383 42 0.10
384 3 0.01
386 1 0.00
387 50 0.12
388 1 0.00
389 47 0.12
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.27
Consensus pattern (389 bp):
TTCAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGACGCCTCTCTTTAAAG
CCCACACAAGTTGGTGGCACCTTCAGTCCTCAAAAAGCAGGACGCTTTCTCTTTTTAAAGCCCAC
ACAAGTTGGTGGCACTTCCTAGTCCTCAAAAAGCAGGACGCTCTCTCCTTTCGCCTTTTTGTCCT
CAAAGAGCAAGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAG
GACGCCTTCTCCTTTTAAGCCCACACAAGTTGGTGGCACCTTCAGTCCTCAAAGAGCAAGATGCT
TTCTTTTTCAAAGCCCACACAAGTTGGTGGCATCTTCCAGTCCTCAAAGAGCAGGACGCCTCTG
Found at i:2490685 original size:61 final size:60
Alignment explanation
Indices: 2490523--2490754 Score: 344
Period size: 61 Copynumber: 3.9 Consensus size: 60
2490513 GCAGGACGCC
2490523 TTTT-AAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGATGCTTTCT
1 TTTTCAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGATGCTTTCT
*
2490582 TTTT-AAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAAGATGCTTTCT
1 TTTTCAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGATGCTTTCT
* * * * *
2490641 TTTTGCAAATCCCACACTAGTTGGTGGCA-TCTTCCAGTCCTCAAAGAGCAGGACGCCTTCT
1 TTTT-CAAAGCCCACACAAGTTGGTGGCACT-TTTCAGTCCTCAAAGAGCAGGATGCTTTCT
* *
2490702 CTTTTCAAAGACCACACGAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGA
1 -TTTTCAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGA
2490755 CACACTTCTT
Statistics
Matches: 157, Mismatches: 11, Indels: 8
0.89 0.06 0.05
Matches are distributed among these distances:
59 62 0.39
60 1 0.01
61 89 0.57
62 5 0.03
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.28
Consensus pattern (60 bp):
TTTTCAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGATGCTTTCT
Found at i:2490788 original size:40 final size:42
Alignment explanation
Indices: 2490738--2490836 Score: 112
Period size: 42 Copynumber: 2.4 Consensus size: 42
2490728 GCACTTTTCA
*
2490738 GTCCTCAAAGAGCAGGACACAC-TT-CTTTCCCTTCTCTTTT
1 GTCCTTAAAGAGCAGGACACACTTTACTTTCCCTTCTCTTTT
* * * * *
2490778 GTCCTTAAAGAACAGGACGCACTTTATTTTCCTTTTTCTTTT
1 GTCCTTAAAGAGCAGGACACACTTTACTTTCCCTTCTCTTTT
* *
2490820 GTCCTTAGAGAGTAGGA
1 GTCCTTAAAGAGCAGGA
2490837 AGTATTTCGT
Statistics
Matches: 48, Mismatches: 9, Indels: 2
0.81 0.15 0.03
Matches are distributed among these distances:
40 19 0.40
41 2 0.04
42 27 0.56
ACGTcount: A:0.22, C:0.24, G:0.16, T:0.37
Consensus pattern (42 bp):
GTCCTTAAAGAGCAGGACACACTTTACTTTCCCTTCTCTTTT
Found at i:2491648 original size:21 final size:21
Alignment explanation
Indices: 2491623--2491688 Score: 65
Period size: 21 Copynumber: 3.5 Consensus size: 21
2491613 TGGAATGATG
2491623 GGCATGGAATATAAAAATGAA
1 GGCATGGAATATAAAAATGAA
* *
2491644 GGCATTG-A-AT---GATG--
1 GGCATGGAATATAAAAATGAA
2491658 GGCATGGAATATAAAAATGAA
1 GGCATGGAATATAAAAATGAA
2491679 GGCATGGAAT
1 GGCATGGAAT
2491689 GATGGGCATG
Statistics
Matches: 34, Mismatches: 4, Indels: 14
0.65 0.08 0.27
Matches are distributed among these distances:
14 6 0.18
15 1 0.03
16 5 0.15
19 5 0.15
20 1 0.03
21 16 0.47
ACGTcount: A:0.44, C:0.06, G:0.29, T:0.21
Consensus pattern (21 bp):
GGCATGGAATATAAAAATGAA
Found at i:2491656 original size:35 final size:35
Alignment explanation
Indices: 2491611--2491762 Score: 245
Period size: 35 Copynumber: 4.4 Consensus size: 35
2491601 TAAAAAAAAA
2491611 CATGGAATGATGGGCATGGAATATAAAAATGAAGG
1 CATGGAATGATGGGCATGGAATATAAAAATGAAGG
*
2491646 CATTGAATGATGGGCATGGAATATAAAAATGAAGG
1 CATGGAATGATGGGCATGGAATATAAAAATGAAGG
*
2491681 CATGGAATGATGGGCATGGAATAAAAAAATGAAGG
1 CATGGAATGATGGGCATGGAATATAAAAATGAAGG
* *
2491716 CAT-AATATGATGGGCATGGAATA-AAAATTGAAGG
1 CATGGA-ATGATGGGCATGGAATATAAAAATGAAGG
2491750 CATGGAATGATGG
1 CATGGAATGATGG
2491763 ATAAAAATGA
Statistics
Matches: 109, Mismatches: 6, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
34 21 0.19
35 88 0.81
ACGTcount: A:0.43, C:0.06, G:0.30, T:0.21
Consensus pattern (35 bp):
CATGGAATGATGGGCATGGAATATAAAAATGAAGG
Found at i:2493104 original size:79 final size:79
Alignment explanation
Indices: 2492973--2493814 Score: 1242
Period size: 79 Copynumber: 10.7 Consensus size: 79
2492963 GTTAAGTTTC
* * * ** *
2492973 TCAATTTTTCACAATCGGGGAAACTCCAATCCCGTTA-TTTCTGAAAGGATACTCCAACTCCGGT
1 TCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTTC-GAGGGGATACTCCAACCCCGGT
*
2493037 TTTATCTCTAAAACA
65 TTTATTTCTAAAACA
2493052 TCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGTT
1 TCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGTT
*
2493117 TTATTTCTAAAATA
66 TTATTTCTAAAACA
* * * *
2493131 TTAATTTTTCATAATCGGAGATACTCCAACCCCGTTA-TTTCTGAGGGGATACTCCAACCCTGGC
1 TCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTTC-GAGGGGATACTCCAACCCCGGT
2493195 TTTATTTCTAAAACA
65 TTTATTTCTAAAACA
* *
2493210 TCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCTCGGTT
1 TCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGTT
2493275 TTATTTCTAAAACA
66 TTATTTCTAAAACA
* * * * *
2493289 GCAATTTTTCATAATCAGGGATACTCCAACCCTGTTATTTCCGAGAGGATACTCCAACCCCGGTT
1 TCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGTT
* *
2493354 GTATCTCTAAAACA
66 TTATTTCTAAAACA
* *
2493368 TCAATTTTTCATAACCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTTCAACCCCGGTT
1 TCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGTT
*
2493433 TTATTTCTAAAATA
66 TTATTTCTAAAACA
* *
2493447 TTAATTTTTCACAATCGGGGATACTCCAACCCCGTTA-TTTCTGAGGGGATACTCCAACCCCGGT
1 TCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTTC-GAGGGGATACTCCAACCCCGGT
2493511 TTTATTTCTAAAACA
65 TTTATTTCTAAAACA
* * **
2493526 CCAATTTTTCATAATCAGGGATACTCCAACCCTATTATTTTCGAGGGGATACTCCAACCCCGGTT
1 TCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGTT
* *
2493591 GTATCTCTAAAACA
66 TTATTTCTAAAACA
* **
2493605 TCAATTTTTCATAACCGGGGATACTCCAACCCCGTTATTTAAGAGGGGATACTCCAACCCCGGTT
1 TCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGTT
* *
2493670 TGATTTCTAAAATA
66 TTATTTCTAAAACA
* *
2493684 TTAATTTTTCACAATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGTT
1 TCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGTT
* *
2493749 GTATCTCTAAAACA
66 TTATTTCTAAAACA
* *
2493763 TCAATTTTTCATAA-CCGGGATACTCTAACCCCGTTATTTTCGAGGGGATACT
1 TCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACT
2493815 TTTGGGTGGC
Statistics
Matches: 685, Mismatches: 73, Indels: 11
0.89 0.09 0.01
Matches are distributed among these distances:
78 44 0.06
79 630 0.92
80 11 0.02
ACGTcount: A:0.28, C:0.25, G:0.15, T:0.32
Consensus pattern (79 bp):
TCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGTT
TTATTTCTAAAACA
Found at i:2494039 original size:60 final size:59
Alignment explanation
Indices: 2493933--2494125 Score: 225
Period size: 60 Copynumber: 3.3 Consensus size: 59
2493923 CGCCTTTTTG
*
2493933 TCCTCAAAGAGCAAGACGCCTT-T-C---AAAGCCCACACAAGTTGGTGGCACTTTTCAT
1 TCCTCAAAGAGCAAGACGCCTTCTCCTTTTAAGCCCACACAAGTTGGTGGCAC-TTTCAT
* *
2493988 TCCTCAAAGAGCAAGACGCCTTCTCCTTTTAAGCCCACACAAGTTGGTGGCACCTTCAG
1 TCCTCAAAGAGCAAGACGCCTTCTCCTTTTAAGCCCACACAAGTTGGTGGCACTTTCAT
* * * * * * *
2494047 TCCTCAAAAAGTAGGACGCTTTCTCTTTTTAAAGCCCACACAAGTTGGTGGCACTTCCTT
1 TCCTCAAAGAGCAAGACGCCTTCTCCTTTT-AAGCCCACACAAGTTGGTGGCACTTTCAT
*
2494107 GTCCTCAAAGAGCAGGACG
1 -TCCTCAAAGAGCAAGACG
2494126 TTCTCTCCTT
Statistics
Matches: 117, Mismatches: 14, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
55 22 0.19
56 1 0.01
57 1 0.01
59 29 0.25
60 48 0.41
61 16 0.14
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (59 bp):
TCCTCAAAGAGCAAGACGCCTTCTCCTTTTAAGCCCACACAAGTTGGTGGCACTTTCAT
Found at i:2494190 original size:214 final size:209
Alignment explanation
Indices: 2493819--2494770 Score: 1158
Period size: 214 Copynumber: 4.4 Consensus size: 209
2493809 GATACTTTTG
* *
2493819 GGTGGCACCTTCAGTCCTCAAAAAGTAGGACGCTTTCTCTTTTTAAAGCCCACACAAGTTGGTGG
1 GGTGGCACCTTCAGTCCTCAAAGAGCAGGACGCTTTCTCTTTTTAAAGCCCACACAAGTTGGTGG
* *
2493884 CACTTCCTAGTCCTCAAAAAGCAGGACGTTCTCTCCTTTCGCCTTTTTGTCCTCAAAGAGCAAGA
66 CACTTCCTAGTCCTCAAAGAGCAGGACGTTCTCTCCTTTCGCCTTTTTGTCCTCAAAGAGCAGGA
* *
2493949 CGCCTTTCAAAGCCCACACAAGTTGGTGGCACTTTTCATTCCTCAAAGAGCAAGACGCCTTCTCC
131 CGCCTTT-AAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGACG----CTCC
2494014 TTTTAAGCCCACACAAGTT
191 TTTTAAGCCCACACAAGTT
* *
2494033 GGTGGCACCTTCAGTCCTCAAAAAGTAGGACGCTTTCTCTTTTTAAAGCCCACACAAGTTGGTGG
1 GGTGGCACCTTCAGTCCTCAAAGAGCAGGACGCTTTCTCTTTTTAAAGCCCACACAAGTTGGTGG
*
2494098 CACTTCCTTGTCCTCAAAGAGCAGGACGTTCTCTCCTTTCGCCTTTTTGTCCTCAAAGAGCAGGA
66 CACTTCCTAGTCCTCAAAGAGCAGGACGTTCTCTCCTTTCGCCTTTTTGTCCTCAAAGAGCAGGA
* * * * *
2494163 CACCTCTTAAACCCCACACAGGTTGGTGGCATTTTTCAGTCCTTAAAGAGCAGGACG--CCTTTT
131 CGCCT-TTAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGACGCTCCTTTT
2494226 AAGCCCACACAAGTT
195 AAGCCCACACAAGTT
* *
2494241 GGTGGCACCTTTCAATCCTCAAAGAGCAGGA--C--TC-C-TTTTAAAGCCCACAGAAGTTGGTG
1 GGTGGCACC-TTCAGTCCTCAAAGAGCAGGACGCTTTCTCTTTTTAAAGCCCACACAAGTTGGTG
* * * * *
2494300 GCACTT-TTCAGTCCTCAAAGAGCAAGATGCTTTCTTTTTAAAGCCCACACAAGTTGGTGGCACT
65 GCACTTCCT-AGTCCTCAAAGAGCAGGA--CGTTC----T------CTC-C---TT--TCGC-C-
* * *
2494364 TTTTTGTCCTCAAAGAGCAGGACGCCGTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCTT
109 TTTTTGTCCTCAAAGAGCAGGACGCC-TTTAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCT
2494429 CAAAGAGCAGGACG--CCTTTTAAAGCCCACACAAGTT
173 CAAAGAGCAGGACGCTCCTTTT-AAGCCCACACAAGTT
*
2494465 GGTGGCACCTTCAGTCCTCAAAGAGCAGGATGCTTTCT-TTTTTAAAGCCCACACAAGTTGGTGG
1 GGTGGCACCTTCAGTCCTCAAAGAGCAGGACGCTTTCTCTTTTTAAAGCCCACACAAGTTGGTGG
* *
2494529 CACTTCCTAGTCCTCAAAGAGCAGGACGCTCTCTCCTTTCGCCTTTTTGTCCTCAAGGAGCAGGA
66 CACTTCCTAGTCCTCAAAGAGCAGGACGTTCTCTCCTTTCGCCTTTTTGTCCTCAAAGAGCAGGA
* *
2494594 CGCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGATGCTTTCTTT
131 CGCC-TTTAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGACGC--TCCTT
2494659 TTAAAGCCCACACAAGTT
193 TT-AAGCCCACACAAGTT
* * * * * *
2494677 GGTGGCACTTTTCAGTCCTCAAAGAGCAAGATGCTTTCT-TTTTGCAAATCCCACACTAGTTGGT
1 GGTGGCAC-CTTCAGTCCTCAAAGAGCAGGACGCTTTCTCTTTT-TAAAGCCCACACAAGTTGGT
2494741 GGCATCTTCC-AGTCCTCAAAGAGCAGGACG
64 GGCA-CTTCCTAGTCCTCAAAGAGCAGGACG
2494771 CCTTCTCTTT
Statistics
Matches: 651, Mismatches: 48, Indels: 78
0.84 0.06 0.10
Matches are distributed among these distances:
202 1 0.00
203 45 0.07
204 1 0.00
205 6 0.01
207 1 0.00
208 103 0.16
209 20 0.03
210 3 0.00
212 31 0.05
213 32 0.05
214 215 0.33
215 10 0.02
216 3 0.00
219 2 0.00
221 3 0.00
222 2 0.00
223 95 0.15
224 25 0.04
225 1 0.00
226 3 0.00
227 2 0.00
228 46 0.07
229 1 0.00
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.27
Consensus pattern (209 bp):
GGTGGCACCTTCAGTCCTCAAAGAGCAGGACGCTTTCTCTTTTTAAAGCCCACACAAGTTGGTGG
CACTTCCTAGTCCTCAAAGAGCAGGACGTTCTCTCCTTTCGCCTTTTTGTCCTCAAAGAGCAGGA
CGCCTTTAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGACGCTCCTTTTA
AGCCCACACAAGTT
Found at i:2494309 original size:55 final size:55
Alignment explanation
Indices: 2494146--2494557 Score: 524
Period size: 55 Copynumber: 7.4 Consensus size: 55
2494136 TCGCCTTTTT
* * * * *
2494146 GTCCTCAAAGAGCAGGACACCTCTTAAACCCCACACAGGTTGGTGGCATTTTTCA
1 GTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCA
* *
2494201 GTCCTTAAAGAGCAGGACGCCTTTT-AAGCCCACACAAGTTGGTGGCACCTTTCA
1 GTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCA
* * *
2494255 ATCCTCAAAGAGCAGGACTCCTTTTAAAGCCCACAGAAGTTGGTGGCACTTTTCA
1 GTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCA
* * **
2494310 GTCCTCAAAGAGCAAGATGCTTTCTTTTTAAAGCCCACACAAGTTGGTGGCACTTTTTT
1 GTCCTCAAAGAGCAGGACGC---C-TTTTAAAGCCCACACAAGTTGGTGGCACTTTTCA
* * *
2494369 GTCCTCAAAGAGCAGGACGCCGTTCAAAGCCCACACAAGTTGGTGGCACCTTTCA
1 GTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCA
* *
2494424 GTCTTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCAC-CTTCA
1 GTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCA
* *
2494478 GTCCTCAAAGAGCAGGATGCTTTCTTTTTTAAAGCCCACACAAGTTGGTGGCAC-TTCCTA
1 GTCCTCAAAGAGCAGGACGC---C--TTTTAAAGCCCACACAAGTTGGTGGCACTTTTC-A
2494538 GTCCTCAAAGAGCAGGACGC
1 GTCCTCAAAGAGCAGGACGC
2494558 TCTCTCCTTT
Statistics
Matches: 311, Mismatches: 35, Indels: 17
0.86 0.10 0.05
Matches are distributed among these distances:
54 69 0.22
55 140 0.45
56 1 0.00
57 1 0.00
58 1 0.00
59 79 0.25
60 20 0.06
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (55 bp):
GTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCA
Found at i:2494386 original size:114 final size:109
Alignment explanation
Indices: 2494146--2494557 Score: 522
Period size: 114 Copynumber: 3.7 Consensus size: 109
2494136 TCGCCTTTTT
* * * * * *
2494146 GTCCTCAAAGAGCAGGACACCTCTTAAACCCCACACAGGTTGGTGGCATTTTTCAGTCCTTAAAG
1 GTCCTCAAAGAGCAGGACTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAG
2494211 AGCAGGACGCCTTTT-AAGCCCACACAAGTTGGTGGCACCTTTCA
66 AGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCA-CTTTCA
* *
2494255 ATCCTCAAAGAGCAGGACTCCTTTTAAAGCCCACAGAAGTTGGTGGCACTTTTCAGTCCTCAAAG
1 GTCCTCAAAGAGCAGGACTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAG
* * **
2494320 AGCAAGATGCTTTCTTTTTAAAGCCCACACAAGTTGGTGGCACTTTTTT
66 AGCAGGACGC---C-TTTTAAAGCCCACACAAGTTGGTGGCAC-TTTCA
* * * * *
2494369 GTCCTCAAAGAGCAGGACGCCGTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCTTCAAAG
1 GTCCTCAAAGAGCAGGACTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAG
*
2494434 AGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCA
66 AGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTCA
* *
2494478 GTCCTCAAAGAGCAGGATGCTTTCTTTTTTAAAGCCCACACAAGTTGGTGGCAC-TTCCTAGTCC
1 GTCCTCAAAGAGCAGGA--C--TC-CTTTTAAAGCCCACACAAGTTGGTGGCACTTTTC-AGTCC
2494542 TCAAAGAGCAGGACGC
60 TCAAAGAGCAGGACGC
2494558 TCTCTCCTTT
Statistics
Matches: 261, Mismatches: 30, Indels: 19
0.84 0.10 0.06
Matches are distributed among these distances:
109 84 0.32
110 28 0.11
111 2 0.01
112 1 0.00
113 9 0.03
114 137 0.52
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (109 bp):
GTCCTCAAAGAGCAGGACTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAG
AGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTCA
Found at i:2494434 original size:169 final size:168
Alignment explanation
Indices: 2494169--2494557 Score: 611
Period size: 169 Copynumber: 2.3 Consensus size: 168
2494159 AGGACACCTC
* * * **
2494169 TTAAACCCCACACAGGTTGGTGGCA-TTTTTCAGTCCTTAAAGAGCAGGACGCCTTTTAAGCCCA
1 TTAAAGCCCACACAAGTTGGTGGCACTTTTT-AGTCCTCAAAGAGCAGGACGCCTTCAAAGCCCA
* *
2494233 CACAAGTTGGTGGCACCTTTCAATCCTCAAAGAGCAGGACTCCTTTTAAAGCCCACAGAAGTTGG
65 CACAAGTTGGTGGCACCTTTCAATCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGG
*
2494298 TGGCACTTTTCAGTCCTCAAAGAGCAAGATGCTTTC-TTT
130 TGGCAC-CTTCAGTCCTCAAAGAGCAAGATGCTTTCTTTT
*
2494337 TTAAAGCCCACACAAGTTGGTGGCACTTTTTTGTCCTCAAAGAGCAGGACGCCGTTCAAAGCCCA
1 TTAAAGCCCACACAAGTTGGTGGCACTTTTTAGTCCTCAAAGAGCAGGACGCC-TTCAAAGCCCA
* *
2494402 CACAAGTTGGTGGCACCTTTCAGTCTTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGG
65 CACAAGTTGGTGGCACCTTTCAATCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGG
*
2494467 TGGCACCTTCAGTCCTCAAAGAGCAGGATGCTTTCTTTT
130 TGGCACCTTCAGTCCTCAAAGAGCAAGATGCTTTCTTTT
**
2494506 TTAAAGCCCACACAAGTTGGTGGCACTTCCTAGTCCTCAAAGAGCAGGACGC
1 TTAAAGCCCACACAAGTTGGTGGCACTTTTTAGTCCTCAAAGAGCAGGACGC
2494558 TCTCTCCTTT
Statistics
Matches: 203, Mismatches: 15, Indels: 5
0.91 0.07 0.02
Matches are distributed among these distances:
168 70 0.34
169 133 0.66
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.25
Consensus pattern (168 bp):
TTAAAGCCCACACAAGTTGGTGGCACTTTTTAGTCCTCAAAGAGCAGGACGCCTTCAAAGCCCAC
ACAAGTTGGTGGCACCTTTCAATCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGT
GGCACCTTCAGTCCTCAAAGAGCAAGATGCTTTCTTTT
Found at i:2494695 original size:153 final size:153
Alignment explanation
Indices: 2494428--2494704 Score: 495
Period size: 153 Copynumber: 1.8 Consensus size: 153
2494418 CTTTCAGTCT
2494428 TCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCAGTCCTCAAAGAGCAG
1 TCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCAGTCCTCAAAGAGCAG
2494493 GATGCTTTCTTTTTTAAAGCCCACACAAGTTGGTGGCACTTCCTAGTCCTCAAAGAGCAGGACGC
66 GATGCTTTCTTTTTTAAAGCCCACACAAGTTGGTGGCACTTCCTAGTCCTCAAAGAGCAGGACGC
2494558 TCTCTCCTTTCGCCTTTTTGTCC
131 TCTCTCCTTTCGCCTTTTTGTCC
* *
2494581 TCAAGGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCA
1 TCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCAC-CTTCAGTCCTCAAAGAGCA
*
2494646 GGATGCTTTC-TTTTTAAAGCCCACACAAGTTGGTGGCACTT-TTCAGTCCTCAAAGAGCA
65 GGATGCTTTCTTTTTTAAAGCCCACACAAGTTGGTGGCACTTCCT-AGTCCTCAAAGAGCA
2494705 AGATGCTTTC
Statistics
Matches: 119, Mismatches: 3, Indels: 4
0.94 0.02 0.03
Matches are distributed among these distances:
152 1 0.01
153 90 0.76
154 28 0.24
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.27
Consensus pattern (153 bp):
TCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCAGTCCTCAAAGAGCAG
GATGCTTTCTTTTTTAAAGCCCACACAAGTTGGTGGCACTTCCTAGTCCTCAAAGAGCAGGACGC
TCTCTCCTTTCGCCTTTTTGTCC
Found at i:2494760 original size:61 final size:60
Alignment explanation
Indices: 2494598--2494829 Score: 344
Period size: 61 Copynumber: 3.9 Consensus size: 60
2494588 GCAGGACGCC
2494598 TTTT-AAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGATGCTTTCT
1 TTTTCAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGATGCTTTCT
*
2494657 TTTT-AAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAAGATGCTTTCT
1 TTTTCAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGATGCTTTCT
* * * * *
2494716 TTTTGCAAATCCCACACTAGTTGGTGGCA-TCTTCCAGTCCTCAAAGAGCAGGACGCCTTCT
1 TTTT-CAAAGCCCACACAAGTTGGTGGCACT-TTTCAGTCCTCAAAGAGCAGGATGCTTTCT
* *
2494777 CTTTTCAAAGACCACACGAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGA
1 -TTTTCAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGA
2494830 CACACTTCTT
Statistics
Matches: 157, Mismatches: 11, Indels: 8
0.89 0.06 0.05
Matches are distributed among these distances:
59 62 0.39
60 1 0.01
61 89 0.57
62 5 0.03
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.28
Consensus pattern (60 bp):
TTTTCAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGATGCTTTCT
Found at i:2494863 original size:40 final size:42
Alignment explanation
Indices: 2494813--2494911 Score: 112
Period size: 42 Copynumber: 2.4 Consensus size: 42
2494803 GCACTTTTCA
*
2494813 GTCCTCAAAGAGCAGGACACAC-TT-CTTTCCCTTCTCTTTT
1 GTCCTTAAAGAGCAGGACACACTTTACTTTCCCTTCTCTTTT
* * * * *
2494853 GTCCTTAAAGAACAGGACGCACTTTATTTTCCTTTTTCTTTT
1 GTCCTTAAAGAGCAGGACACACTTTACTTTCCCTTCTCTTTT
* *
2494895 GTCCTTAGAGAGTAGGA
1 GTCCTTAAAGAGCAGGA
2494912 AGTATTTCGT
Statistics
Matches: 48, Mismatches: 9, Indels: 2
0.81 0.15 0.03
Matches are distributed among these distances:
40 19 0.40
41 2 0.04
42 27 0.56
ACGTcount: A:0.22, C:0.24, G:0.16, T:0.37
Consensus pattern (42 bp):
GTCCTTAAAGAGCAGGACACACTTTACTTTCCCTTCTCTTTT
Found at i:2495724 original size:21 final size:21
Alignment explanation
Indices: 2495699--2495764 Score: 65
Period size: 21 Copynumber: 3.5 Consensus size: 21
2495689 TGGAATGATG
2495699 GGCATGGAATATAAAAATGAA
1 GGCATGGAATATAAAAATGAA
* *
2495720 GGCATTG-A-AT---GATG--
1 GGCATGGAATATAAAAATGAA
2495734 GGCATGGAATATAAAAATGAA
1 GGCATGGAATATAAAAATGAA
2495755 GGCATGGAAT
1 GGCATGGAAT
2495765 GATGGGCATG
Statistics
Matches: 34, Mismatches: 4, Indels: 14
0.65 0.08 0.27
Matches are distributed among these distances:
14 6 0.18
15 1 0.03
16 5 0.15
19 5 0.15
20 1 0.03
21 16 0.47
ACGTcount: A:0.44, C:0.06, G:0.29, T:0.21
Consensus pattern (21 bp):
GGCATGGAATATAAAAATGAA
Found at i:2495732 original size:35 final size:35
Alignment explanation
Indices: 2495687--2495838 Score: 245
Period size: 35 Copynumber: 4.4 Consensus size: 35
2495677 AAAAAAAAAA
2495687 CATGGAATGATGGGCATGGAATATAAAAATGAAGG
1 CATGGAATGATGGGCATGGAATATAAAAATGAAGG
*
2495722 CATTGAATGATGGGCATGGAATATAAAAATGAAGG
1 CATGGAATGATGGGCATGGAATATAAAAATGAAGG
*
2495757 CATGGAATGATGGGCATGGAATAAAAAAATGAAGG
1 CATGGAATGATGGGCATGGAATATAAAAATGAAGG
* *
2495792 CAT-AATATGATGGGCATGGAATA-AAAATTGAAGG
1 CATGGA-ATGATGGGCATGGAATATAAAAATGAAGG
2495826 CATGGAATGATGG
1 CATGGAATGATGG
2495839 ATAAAAATGA
Statistics
Matches: 109, Mismatches: 6, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
34 21 0.19
35 88 0.81
ACGTcount: A:0.43, C:0.06, G:0.30, T:0.21
Consensus pattern (35 bp):
CATGGAATGATGGGCATGGAATATAAAAATGAAGG
Found at i:2497181 original size:79 final size:79
Alignment explanation
Indices: 2497048--2498187 Score: 1701
Period size: 79 Copynumber: 14.4 Consensus size: 79
2497038 GTTAAGTTTC
* * * * ** *
2497048 TCAATTTTTCACAATCGGGGAAACTCTAATCCCGTTA-TTTCTGAAAGGATACTCCAACTCCGGT
1 TCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTTC-GAGGGGATACTCCAACCCCGGT
*
2497112 TTTATCTCTAAAACA
65 TTTATTTCTAAAACA
*
2497127 TAAATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGTT
1 TCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGTT
*
2497192 TTATTTCTAAAATA
66 TTATTTCTAAAACA
* * * * *
2497206 TTAATTTTTCACAATCGGAGATACTCCAACCCCGTTA-TTTCTGAGGGGATACTCCAACCCTGGC
1 TCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTTC-GAGGGGATACTCCAACCCCGGT
2497270 TTTATTTCTAAAACA
65 TTTATTTCTAAAACA
* *
2497285 TCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCTCGGTT
1 TCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGTT
2497350 TTATTTCTAAAACA
66 TTATTTCTAAAACA
* * * * *
2497364 GCAATTTTTCATAATCAGGGATACTCCAACCCTGTTATTTCCGAGAGGATACTCCAACCCCGGTT
1 TCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGTT
* *
2497429 GTATCTCTAAAACA
66 TTATTTCTAAAACA
* *
2497443 TCAATTTTTCATAACCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTTCAACCCCGGTT
1 TCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGTT
*
2497508 TTATTTCTAAAATA
66 TTATTTCTAAAACA
* * *
2497522 TTAATTTTTCACAATCGAGGATACTCCAACCCCGTTA-TTTCTGAGGGGATACTCCAACCCCGGT
1 TCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTTC-GAGGGGATACTCCAACCCCGGT
2497586 TTTATTTCTAAAACA
65 TTTATTTCTAAAACA
* * ** *
2497601 CCAATTTTTCATAATCAGGGATACTCCAACCCTATTATTTCCGAGGGGATACTCCAACCCCGGTT
1 TCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGTT
* *
2497666 GTATCTCTAAAACA
66 TTATTTCTAAAACA
* ** *
2497680 TCAATTTTTCATAACCGGGGATACTCCAACCCCGTTATTTAAGAAGGGATACTCCAACCCCGGTT
1 TCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGTT
*
2497745 TTATTTCTAAAATA
66 TTATTTCTAAAACA
* *
2497759 TTAATTTTTCACAATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGTT
1 TCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGTT
* *
2497824 GTATCTCTAAAACA
66 TTATTTCTAAAACA
* * *
2497838 TCAATTTTTCATAACCGGGGATACTCTAACCTCGTTATTTTCGAGGGGATACTCCAACCCCGGTT
1 TCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGTT
*
2497903 TTATTTCTAAAATA
66 TTATTTCTAAAACA
* *
2497917 TTAATTTTTCACAATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGTT
1 TCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGTT
2497982 TTATTTCTAAAACA
66 TTATTTCTAAAACA
* *
2497996 CCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCAGTT
1 TCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGTT
*
2498061 TTATCTCTAAAACA
66 TTATTTCTAAAACA
*
2498075 TCAATTTTTTATAATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGTT
1 TCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGTT
*
2498140 TTATTTCTAAAATA
66 TTATTTCTAAAACA
* *
2498154 TTAATTTTTCACAATCGGGGATACTCCAACCCCG
1 TCAATTTTTCATAATCGGGGATACTCCAACCCCG
2498188 GTTTTCTTTC
Statistics
Matches: 953, Mismatches: 103, Indels: 10
0.89 0.10 0.01
Matches are distributed among these distances:
78 8 0.01
79 935 0.98
80 10 0.01
ACGTcount: A:0.28, C:0.25, G:0.15, T:0.32
Consensus pattern (79 bp):
TCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGTT
TTATTTCTAAAACA
Found at i:2498182 original size:51 final size:51
Alignment explanation
Indices: 2498119--2498238 Score: 186
Period size: 51 Copynumber: 2.4 Consensus size: 51
2498109 TTATTTTCGA
* **
2498119 GGGGATACTCCAACCCCGGTTTTATTTCTAAAATATTAATTTTTCACAATC
1 GGGGATACTCCAACCCCGGTTTTATTTCTAAAACACCAATTTTTCACAATC
* *
2498170 GGGGATACTCCAACCCCGGTTTTCTTTCTAAAACACCAATTTTTCATAATC
1 GGGGATACTCCAACCCCGGTTTTATTTCTAAAACACCAATTTTTCACAATC
*
2498221 GAGGATACTCCAACCCCG
1 GGGGATACTCCAACCCCG
2498239 TTATTTCCGA
Statistics
Matches: 63, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
51 63 1.00
ACGTcount: A:0.28, C:0.27, G:0.13, T:0.32
Consensus pattern (51 bp):
GGGGATACTCCAACCCCGGTTTTATTTCTAAAACACCAATTTTTCACAATC
Found at i:2498200 original size:130 final size:130
Alignment explanation
Indices: 2498040--2498324 Score: 453
Period size: 130 Copynumber: 2.2 Consensus size: 130
2498030 TTATTTTCGA
* * * *
2498040 GGGGATACTCCAACCCCAGTTTTATCTCTAAAACATCAATTTTTTATAATCGGGGATACTCCAAC
1 GGGGATACTCCAACCCCGGTTTTATCTCTAAAACACCAATTTTTCATAATCGAGGATACTCCAAC
* * * *
2498105 CCCGTTATTTTCGAGGGGATACTCCAACCCCGGTTTTATTTCTAAAATATTAATTTTTCACAATC
66 CCCGTTATTTCCGAGGGGATACTCCAACCACGGTTTTATTTCTAAAACATCAATTTTTCACAATC
* *
2498170 GGGGATACTCCAACCCCGGTTTTCTTTCTAAAACACCAATTTTTCATAATCGAGGATACTCCAAC
1 GGGGATACTCCAACCCCGGTTTTATCTCTAAAACACCAATTTTTCATAATCGAGGATACTCCAAC
*
2498235 CCCGTTATTTCCGAGGGGATACTCCAACCACGGTTTTATTTCTAAAACATCAATTTTTCATAATC
66 CCCGTTATTTCCGAGGGGATACTCCAACCACGGTTTTATTTCTAAAACATCAATTTTTCACAATC
* *
2498300 GGGGATACTCTAACCCCGATTTTAT
1 GGGGATACTCCAACCCCGGTTTTAT
2498325 TTTTTAGAAC
Statistics
Matches: 141, Mismatches: 14, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
130 141 1.00
ACGTcount: A:0.28, C:0.25, G:0.14, T:0.33
Consensus pattern (130 bp):
GGGGATACTCCAACCCCGGTTTTATCTCTAAAACACCAATTTTTCATAATCGAGGATACTCCAAC
CCCGTTATTTCCGAGGGGATACTCCAACCACGGTTTTATTTCTAAAACATCAATTTTTCACAATC
Found at i:2498253 original size:79 final size:79
Alignment explanation
Indices: 2498170--2498317 Score: 251
Period size: 79 Copynumber: 1.9 Consensus size: 79
2498160 TTTCACAATC
* *
2498170 GGGGATACTCCAACCCCGGTTTTCTTTCTAAAACACCAATTTTTCATAATCGAGGATACTCCAAC
1 GGGGATACTCCAACCACGGTTTTATTTCTAAAACACCAATTTTTCATAATCGAGGATACTCCAAC
2498235 CCCGTTATTTCCGA
66 CCCGTTATTTCCGA
* * *
2498249 GGGGATACTCCAACCACGGTTTTATTTCTAAAACATCAATTTTTCATAATCGGGGATACTCTAAC
1 GGGGATACTCCAACCACGGTTTTATTTCTAAAACACCAATTTTTCATAATCGAGGATACTCCAAC
2498314 CCCG
66 CCCG
2498318 ATTTTATTTT
Statistics
Matches: 64, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
79 64 1.00
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.30
Consensus pattern (79 bp):
GGGGATACTCCAACCACGGTTTTATTTCTAAAACACCAATTTTTCATAATCGAGGATACTCCAAC
CCCGTTATTTCCGA
Found at i:2498325 original size:51 final size:50
Alignment explanation
Indices: 2498249--2498395 Score: 143
Period size: 52 Copynumber: 2.8 Consensus size: 50
2498239 TTATTTCCGA
* *
2498249 GGGGATACTCCAACCACGGTTTTATTTCTAAAACATCAATTTTT-CATAATC
1 GGGGATACTCTAACC-CCGTTTTATTTCTAAAACA-CAATTTTTCCATAATC
* * **
2498300 GGGGATACTCTAACCCCGATTTTATTTTTTAGAACACCGTTTTTCCATAATC
1 GGGGATACTCTAACCCCG-TTTTA-TTTCTAAAACACAATTTTTCCATAATC
* * * *
2498352 AGGGATACTCTAGCCCCGTTGTTATCTCTAAAATACTAATTTTT
1 GGGGATACTCTAACCCCGTT-TTATTTCTAAAACAC-AATTTTT
2498396 TTTCTCGTCA
Statistics
Matches: 77, Mismatches: 14, Indels: 9
0.77 0.14 0.09
Matches are distributed among these distances:
50 2 0.03
51 35 0.45
52 40 0.52
ACGTcount: A:0.28, C:0.22, G:0.13, T:0.37
Consensus pattern (50 bp):
GGGGATACTCTAACCCCGTTTTATTTCTAAAACACAATTTTTCCATAATC
Found at i:2498343 original size:130 final size:130
Alignment explanation
Indices: 2498040--2498371 Score: 445
Period size: 130 Copynumber: 2.5 Consensus size: 130
2498030 TTATTTTCGA
* * * * *
2498040 GGGGATACTCCAACCCC-AGTTTTATCTCTAAAACATCAATTTTTTATAATCGGGGATACTCCAA
1 GGGGATACTCCAACCCCGA-TTTTCTTTCTAAAACACCAATTTTTCATAATCGAGGATACTCCAA
* * * *
2498104 CCCCGTTATTTTCGAGGGGATACTCCAACCCCGGTTTTATTTCTAAAATATTAATTTTTCACAAT
65 CCCCGTTATTTCCGAGGGGATACTCCAACCACGGTTTTATTTCTAAAACATCAATTTTTCACAAT
2498169 C
130 C
*
2498170 GGGGATACTCCAACCCCGGTTTTCTTTCTAAAACACCAATTTTTCATAATCGAGGATACTCCAAC
1 GGGGATACTCCAACCCCGATTTTCTTTCTAAAACACCAATTTTTCATAATCGAGGATACTCCAAC
*
2498235 CCCGTTATTTCCGAGGGGATACTCCAACCACGGTTTTATTTCTAAAACATCAATTTTTCATAATC
66 CCCGTTATTTCCGAGGGGATACTCCAACCACGGTTTTATTTCTAAAACATCAATTTTTCACAATC
* * * * * *
2498300 GGGGATACTCTAACCCCGATTTTATTTTTTAGAACACC-GTTTTTCCATAATC-AGGGATACTCT
1 GGGGATACTCCAACCCCGATTTT-CTTTCTAAAACACCAATTTTT-CATAATCGA-GGATACTCC
*
2498363 AGCCCCGTT
63 AACCCCGTT
2498372 GTTATCTCTA
Statistics
Matches: 179, Mismatches: 19, Indels: 7
0.87 0.09 0.03
Matches are distributed among these distances:
130 145 0.81
131 34 0.19
ACGTcount: A:0.27, C:0.25, G:0.14, T:0.34
Consensus pattern (130 bp):
GGGGATACTCCAACCCCGATTTTCTTTCTAAAACACCAATTTTTCATAATCGAGGATACTCCAAC
CCCGTTATTTCCGAGGGGATACTCCAACCACGGTTTTATTTCTAAAACATCAATTTTTCACAATC
Found at i:2504184 original size:12 final size:13
Alignment explanation
Indices: 2504163--2504194 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
2504153 GTAAACACAC
2504163 AAAC-AAAAAACA
1 AAACAAAAAAACA
2504175 AAA-AAAAAAACA
1 AAACAAAAAAACA
2504187 AAACAAAA
1 AAACAAAA
2504195 TAAAAAAGAG
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
12 14 0.78
13 4 0.22
ACGTcount: A:0.88, C:0.12, G:0.00, T:0.00
Consensus pattern (13 bp):
AAACAAAAAAACA
Found at i:2505563 original size:30 final size:30
Alignment explanation
Indices: 2505480--2505701 Score: 237
Period size: 30 Copynumber: 7.1 Consensus size: 30
2505470 CAAATCTCTC
* *
2505480 TTTTCTAAGTCCATGACTTAGTGGCATCTTT
1 TTTTCTAAGTCCACGACTCAGTGGCATC-TT
* * **
2505511 TTCTTCAAAATCCATAACTCAGTGGCATCTT
1 TT-TTCTAAGTCCACGACTCAGTGGCATCTT
* *
2505542 TTTTCTAAGTCCACGACTCAGTGGCGTCTC
1 TTTTCTAAGTCCACGACTCAGTGGCATCTT
* *
2505572 TTTCCAAAGTCCACGACTCAGTGGCATCTT
1 TTTTCTAAGTCCACGACTCAGTGGCATCTT
* *
2505602 TTCTTCAAAGTGCACGACTCAGTGGCATCTT
1 TT-TTCTAAGTCCACGACTCAGTGGCATCTT
2505633 TTTTCTTCCAAGTCCACGACTCAGTGGCATCTT
1 TTTTC-T--AAGTCCACGACTCAGTGGCATCTT
*
2505666 TTTTCTTCAAAGTCCACGACTCCGTGGCACTCTT
1 TTTTC-T--AAGTCCACGACTCAGTGGCA-TCTT
2505700 TT
1 TT
2505702 AAGCCCACAA
Statistics
Matches: 165, Mismatches: 20, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
30 53 0.32
31 34 0.21
32 22 0.13
33 50 0.30
34 6 0.04
ACGTcount: A:0.21, C:0.27, G:0.16, T:0.36
Consensus pattern (30 bp):
TTTTCTAAGTCCACGACTCAGTGGCATCTT
Found at i:2505633 original size:91 final size:93
Alignment explanation
Indices: 2505476--2505701 Score: 285
Period size: 91 Copynumber: 2.4 Consensus size: 93
2505466 TCTTCAAATC
* * * * *
2505476 TCTCTTTTCTAAGTCCATGACTTAGTGGCATCTTTTTCTTCAAAATCCATAACTCAGTGGCATCT
1 TCTCTTTCCAAAGTCCACGACTCAGTGGCATC-TTTTCTTCAAAATCCACAACTCAGTGGCATCT
*
2505541 TTTTTC-T-AAGTCCACGACTCAGTGGCG
65 TTTTTCTTCAAGTCCACGACTCAGTGGCA
* * *
2505568 TCTCTTTCCAAAGTCCACGACTCAGTGGCATCTTTTCTTCAAAGTGCACGACTCAGTGGCATCTT
1 TCTCTTTCCAAAGTCCACGACTCAGTGGCATCTTTTCTTCAAAATCCACAACTCAGTGGCATCTT
2505633 TTTTCTTCCAAGTCCACGACTCAGTGGCA
66 TTTTCTT-CAAGTCCACGACTCAGTGGCA
* *
2505662 TCTTTTTTCTTCAAAGTCCACGACTCCGTGGCACTCTTTT
1 TC-TCTTTC--CAAAGTCCACGACTCAGTGGCA-TCTTTT
2505702 AAGCCCACAA
Statistics
Matches: 116, Mismatches: 11, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
91 34 0.29
92 29 0.25
94 21 0.18
95 5 0.04
97 21 0.18
98 6 0.05
ACGTcount: A:0.20, C:0.28, G:0.15, T:0.36
Consensus pattern (93 bp):
TCTCTTTCCAAAGTCCACGACTCAGTGGCATCTTTTCTTCAAAATCCACAACTCAGTGGCATCTT
TTTTCTTCAAGTCCACGACTCAGTGGCA
Found at i:2505651 original size:33 final size:33
Alignment explanation
Indices: 2505486--2505701 Score: 270
Period size: 33 Copynumber: 6.8 Consensus size: 33
2505476 TCTCTTTTCT
* *
2505486 AAGTCCATGACTTAGTGGCATC-TTTTTCTTCA
1 AAGTCCACGACTCAGTGGCATCTTTTTTCTTCA
* **
2505518 AAATCCATAACTCAGTGGCATCTTTTTTC-T--
1 AAGTCCACGACTCAGTGGCATCTTTTTTCTTCA
* *
2505548 AAGTCCACGACTCAGTGGCGTC-TCTTTC--CA
1 AAGTCCACGACTCAGTGGCATCTTTTTTCTTCA
2505578 AAGTCCACGACTCAGTGGCATC--TTTTCTTCA
1 AAGTCCACGACTCAGTGGCATCTTTTTTCTTCA
* *
2505609 AAGTGCACGACTCAGTGGCATCTTTTTTCTTCC
1 AAGTCCACGACTCAGTGGCATCTTTTTTCTTCA
2505642 AAGTCCACGACTCAGTGGCATCTTTTTTCTTCA
1 AAGTCCACGACTCAGTGGCATCTTTTTTCTTCA
*
2505675 AAGTCCACGACTCCGTGGCACTCTTTT
1 AAGTCCACGACTCAGTGGCA-TCTTTT
2505702 AAGCCCACAA
Statistics
Matches: 161, Mismatches: 15, Indels: 14
0.85 0.08 0.07
Matches are distributed among these distances:
29 9 0.06
30 39 0.24
31 23 0.14
32 20 0.12
33 64 0.40
34 6 0.04
ACGTcount: A:0.21, C:0.28, G:0.16, T:0.35
Consensus pattern (33 bp):
AAGTCCACGACTCAGTGGCATCTTTTTTCTTCA
Found at i:2505709 original size:27 final size:27
Alignment explanation
Indices: 2505679--2505988 Score: 143
Period size: 27 Copynumber: 10.4 Consensus size: 27
2505669 TCTTCAAAGT
*
2505679 CCACGACTCCGTGGCACTCTTTTAAGC
1 CCACAACTCCGTGGCACTCTTTTAAGC
* * *
2505706 CCACAACTCTGTGGCCCTATGTTCCTTTAAAGC
1 CCACAACTCCGTGG--C-A--CT-CTTTTAAGC
* *
2505739 CCACAACTCCGTGGCACCCTTTTAAGT
1 CCACAACTCCGTGGCACTCTTTTAAGC
*
2505766 CCACAACTCCGTGGCATCTTTTCCCTTTTAAGT
1 CCACAACTCCGTGGCA-C---T--CTTTTAAGC
* *
2505799 CCATAACTCCGTGGCACCTTGTTCCTTTTAAGT
1 CCACAACTCCGTGGCA-C----T-CTTTTAAGC
*
2505832 CCACAACTCCGTGGCACCTTTTCTTTTTAAGT
1 CCACAACTCCGTGGCA-C---TC-TTTTAAGC
* * *
2505864 CTACCACTCCGTGGCACCCTTTTAAGC
1 CCACAACTCCGTGGCACTCTTTTAAGC
* * *
2505891 CCACAACTCTGTGACACTCTTTTTCCCTTTAAGT
1 CCACAACTCCGTGGCACTC----T---TTTAAGC
* * **
2505925 CCACAACTCAGTGGCACCCTTTTAAAT
1 CCACAACTCCGTGGCACTCTTTTAAGC
* * *
2505952 CCACAACTCCGTGGCACCCTTTTAGGT
1 CCACAACTCCGTGGCACTCTTTTAAGC
2505979 CCACAACTCC
1 CCACAACTCC
2505989 ACGGCATCTT
Statistics
Matches: 230, Mismatches: 32, Indels: 42
0.76 0.11 0.14
Matches are distributed among these distances:
27 96 0.42
28 2 0.01
29 1 0.00
30 3 0.01
31 4 0.02
32 26 0.11
33 73 0.32
34 25 0.11
ACGTcount: A:0.21, C:0.35, G:0.14, T:0.31
Consensus pattern (27 bp):
CCACAACTCCGTGGCACTCTTTTAAGC
Found at i:2505720 original size:124 final size:122
Alignment explanation
Indices: 2505494--2505720 Score: 296
Period size: 124 Copynumber: 1.8 Consensus size: 122
2505484 CTAAGTCCAT
* *
2505494 GACTTAGTGGCATCTTTTTCTTCAAAATCCATAACTCAGTGGCATCTTTTTTCTAAGTCCACGAC
1 GACTCAGTGGCATCTTTTTCTTCAAAATCCACAACTCAGTGGCATCTTTTTTCTAAGTCCACGAC
* * *
2505559 TCAGTGGCGTCTCTTTCCAAAGTCCACGACTCAGTGGCATCTTTTCTTCAAAGTGCAC
66 TCAGTGGCGACTCTTT-CAAAGCCCACAACTCAGTGGCATCTTTTCTTCAAAGTGCAC
* * *
2505617 GACTCAGTGGCATCTTTTTTCTTCCAAGTCCACGACTCAGTGGCATCTTTTTTCTTCAAAGTCCA
1 GACTCAGTGGCATC-TTTTTCTTCAAAATCCACAACTCAGTGGCATCTTTTTTC-T--AAGTCCA
* * *
2505682 CGACTCCGTGGC-ACTCTTT-TAAGCCCACAACTCTGTGGC
62 CGACTCAGTGGCGACTCTTTCAAAGCCCACAACTCAGTGGC
2505721 CCTATGTTCC
Statistics
Matches: 89, Mismatches: 11, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
123 13 0.15
124 51 0.57
125 1 0.01
126 6 0.07
127 18 0.20
ACGTcount: A:0.21, C:0.29, G:0.17, T:0.33
Consensus pattern (122 bp):
GACTCAGTGGCATCTTTTTCTTCAAAATCCACAACTCAGTGGCATCTTTTTTCTAAGTCCACGAC
TCAGTGGCGACTCTTTCAAAGCCCACAACTCAGTGGCATCTTTTCTTCAAAGTGCAC
Found at i:2505797 original size:33 final size:33
Alignment explanation
Indices: 2505578--2506029 Score: 215
Period size: 33 Copynumber: 14.7 Consensus size: 33
2505568 TCTCTTTCCA
* * **
2505578 AAGTCCACGACTCAGTGGCATCTTTT--CTTCA
1 AAGTCCACAACTCCGTGGCATCTTTTCCCTTTT
* * * ** **
2505609 AAGTGCACGACTCAGTGGCATCTTTTTTCTTCC
1 AAGTCCACAACTCCGTGGCATCTTTTCCCTTTT
* * ** **
2505642 AAGTCCACGACTCAGTGGCATCTTTTTTCTTCA
1 AAGTCCACAACTCCGTGGCATCTTTTCCCTTTT
*
2505675 AAGTCCACGACTCCGTGGCA-C---T--CTTTT
1 AAGTCCACAACTCCGTGGCATCTTTTCCCTTTT
* * * *
2505702 AAGCCCACAACTCTGTGGC-CCTATGTT-CCTTTA
1 AAGTCCACAACTCCGTGGCATCT-T-TTCCCTTTT
*
2505735 AAGCCCACAACTCCGTGGCA------CCCTTTT
1 AAGTCCACAACTCCGTGGCATCTTTTCCCTTTT
2505762 AAGTCCACAACTCCGTGGCATCTTTTCCCTTTT
1 AAGTCCACAACTCCGTGGCATCTTTTCCCTTTT
* *
2505795 AAGTCCATAACTCCGTGGCACCTTGTT-CCTTTT
1 AAGTCCACAACTCCGTGGCATCTT-TTCCCTTTT
* *
2505828 AAGTCCACAACTCCGTGGCACCTTTT-CTTTTT
1 AAGTCCACAACTCCGTGGCATCTTTTCCCTTTT
* *
2505860 AAGTCTACCACTCCGTGGCA------CCCTTTT
1 AAGTCCACAACTCCGTGGCATCTTTTCCCTTTT
* * *
2505887 AAGCCCACAACTCTGTGACACTCTTTTTCCC-TTT
1 AAGTCCACAACTCCGTGGCA-TC-TTTTCCCTTTT
*
2505921 AAGTCCACAACTCAGTGGCA------CCCTTTT
1 AAGTCCACAACTCCGTGGCATCTTTTCCCTTTT
*
2505948 AAATCCACAACTCCGTGGCA------CCCTTTT
1 AAGTCCACAACTCCGTGGCATCTTTTCCCTTTT
* ** *
2505975 AGGTCCACAACTCCACGGCATC-TTTCTTCTTTT
1 AAGTCCACAACTCCGTGGCATCTTTTC-CCTTTT
* * *
2506008 AAGCCCACAAGTCAGTGGCATC
1 AAGTCCACAACTCCGTGGCATC
2506030 CTGTAGACAC
Statistics
Matches: 345, Mismatches: 42, Indels: 66
0.76 0.09 0.15
Matches are distributed among these distances:
26 3 0.01
27 108 0.31
29 1 0.00
31 25 0.07
32 28 0.08
33 155 0.45
34 22 0.06
35 3 0.01
ACGTcount: A:0.21, C:0.33, G:0.15, T:0.32
Consensus pattern (33 bp):
AAGTCCACAACTCCGTGGCATCTTTTCCCTTTT
Found at i:2505797 original size:93 final size:86
Alignment explanation
Indices: 2505675--2505987 Score: 349
Period size: 93 Copynumber: 3.5 Consensus size: 86
2505665 TTTTTCTTCA
* * *
2505675 AAGTCCACGACTCCGTGGCACTCTTTTAAGCCCACAACTCTGTGGC-CCTATGTTCCTTTAAAGC
1 AAGTCCACAACTCCGTGGCACCCTTTTAAGCCCACAACTCTGTGGCACCT-TGTTCCTTT-AAGT
2505739 CCACAACTCCGTGGCACCCTTTT
64 CCACAACTCCGTGGCACCCTTTT
* * *
2505762 AAGTCCACAACTCCGTGGCATCTTTTCCCTTTTAAGTCCATAACTCCGTGGCACCTTGTTCCTTT
1 AAGTCCACAACTCCGTGGCA------CCCTTTTAAGCCCACAACTCTGTGGCACCTTGTTCC-TT
2505827 TAAGTCCACAACTCCGTGGCACCTTTTCTTTTT
59 TAAGTCCACAACTCCGTGGCACC----C-TTTT
* * * *
2505860 AAGTCTACCACTCCGTGGCACCCTTTTAAGCCCACAACTCTGTGACACTCTTTTTCCCTTTAAGT
1 AAGTCCACAACTCCGTGGCACCCTTTTAAGCCCACAACTCTGTGGCAC-CTTGTT-CCTTTAAGT
*
2505925 CCACAACTCAGTGGCACCCTTTT
64 CCACAACTCCGTGGCACCCTTTT
* * *
2505948 AAATCCACAACTCCGTGGCACCCTTTTAGGTCCACAACTC
1 AAGTCCACAACTCCGTGGCACCCTTTTAAGCCCACAACTC
2505988 CACGGCATCT
Statistics
Matches: 192, Mismatches: 19, Indels: 29
0.80 0.08 0.12
Matches are distributed among these distances:
87 19 0.10
88 39 0.20
89 1 0.01
92 24 0.12
93 78 0.41
94 8 0.04
97 1 0.01
98 22 0.11
ACGTcount: A:0.21, C:0.35, G:0.14, T:0.31
Consensus pattern (86 bp):
AAGTCCACAACTCCGTGGCACCCTTTTAAGCCCACAACTCTGTGGCACCTTGTTCCTTTAAGTCC
ACAACTCCGTGGCACCCTTTT
Found at i:2505838 original size:66 final size:61
Alignment explanation
Indices: 2505642--2505967 Score: 308
Period size: 60 Copynumber: 5.3 Consensus size: 61
2505632 TTTTTCTTCC
* * ** ** * *
2505642 AAGTCCACGACTCAGTGGCATCTTTTTTCTTCAAAGTCCACGACTCCGTGGCA-CTCTTTT
1 AAGTCCACAACTCCGTGGCATCTTTTCCCTTTTAAGTCCACAACTCCGTGGCACCCCTTTT
* * * * *
2505702 AAGCCCACAACTCTGTGGC-CCTATGTT-CCTTTAAAGCCCACAACTCCGTGGCA-CCCTTTT
1 AAGTCCACAACTCCGTGGCATCT-T-TTCCCTTTTAAGTCCACAACTCCGTGGCACCCCTTTT
*
2505762 AAGTCCACAACTCCGTGGCATCTTTTCCCTTTTAAGTCCATAACTCCGTGGCACCTTGTTCCTTT
1 AAGTCCACAACTCCGTGGCATCTTTTCCCTTTTAAGTCCACAACTCCGTGGCACC-----CCTTT
2505827 T
61 T
* * * *
2505828 AAGTCCACAACTCCGTGGCACCTTTT-CTTTTTAAGTCTACCACTCCGTGGCA-CCCTTTT
1 AAGTCCACAACTCCGTGGCATCTTTTCCCTTTTAAGTCCACAACTCCGTGGCACCCCTTTT
* * * *
2505887 AAGCCCACAACTCTGTGACACTCTTTTTCCC-TTTAAGTCCACAACTCAGTGGCA-CCCTTTT
1 AAGTCCACAACTCCGTGGCA-TC-TTTTCCCTTTTAAGTCCACAACTCCGTGGCACCCCTTTT
*
2505948 AAATCCACAACTCCGTGGCA
1 AAGTCCACAACTCCGTGGCA
2505968 CCCTTTTAGG
Statistics
Matches: 221, Mismatches: 32, Indels: 25
0.79 0.12 0.09
Matches are distributed among these distances:
59 27 0.12
60 87 0.39
61 52 0.24
62 1 0.00
64 1 0.00
65 22 0.10
66 31 0.14
ACGTcount: A:0.21, C:0.33, G:0.14, T:0.31
Consensus pattern (61 bp):
AAGTCCACAACTCCGTGGCATCTTTTCCCTTTTAAGTCCACAACTCCGTGGCACCCCTTTT
Found at i:2505873 original size:32 final size:32
Alignment explanation
Indices: 2505578--2505974 Score: 253
Period size: 33 Copynumber: 12.8 Consensus size: 32
2505568 TCTCTTTCCA
* * * **
2505578 AAGTCCACGACTCAGTGGCATCTTTT-CTTCA
1 AAGTCCACAACTCCGTGGCACCTTTTCCTTTT
* * * * * **
2505609 AAGTGCACGACTCAGTGGCATCTTTTTTCTTCC
1 AAGTCCACAACTCCGTGGCA-CCTTTTCCTTTT
* * * * **
2505642 AAGTCCACGACTCAGTGGCATCTTTTTTCTTCA
1 AAGTCCACAACTCCGTGGCA-CCTTTTCCTTTT
*
2505675 AAGTCCACGACTCCGTGGCA-C---T-CTTTT
1 AAGTCCACAACTCCGTGGCACCTTTTCCTTTT
* * *
2505702 AAGCCCACAACTCTGTGGC-CCTATGTTCCTTTA
1 AAGTCCACAACTCCGTGGCACCT-T-TTCCTTTT
*
2505735 AAGCCCACAACTCCGTGGCA-C----CCTTTT
1 AAGTCCACAACTCCGTGGCACCTTTTCCTTTT
*
2505762 AAGTCCACAACTCCGTGGCATCTTTTCCCTTTT
1 AAGTCCACAACTCCGTGGCACCTTTT-CCTTTT
*
2505795 AAGTCCATAACTCCGTGGCACCTTGTTCCTTTT
1 AAGTCCACAACTCCGTGGCACCTT-TTCCTTTT
*
2505828 AAGTCCACAACTCCGTGGCACCTTTTCTTTTT
1 AAGTCCACAACTCCGTGGCACCTTTTCCTTTT
* *
2505860 AAGTCTACCACTCCGTGGCA-C----CCTTTT
1 AAGTCCACAACTCCGTGGCACCTTTTCCTTTT
* * * *
2505887 AAGCCCACAACTCTGTGACACTCTTTTTCCCTTT
1 AAGTCCACAACTCCGTGGCAC-C-TTTTCCTTTT
*
2505921 AAGTCCACAACTCAGTGGCA-C----CCTTTT
1 AAGTCCACAACTCCGTGGCACCTTTTCCTTTT
*
2505948 AAATCCACAACTCCGTGGCACCCTTTT
1 AAGTCCACAACTCCGTGGCA-CCTTTT
2505975 AGGTCCACAA
Statistics
Matches: 300, Mismatches: 36, Indels: 58
0.76 0.09 0.15
Matches are distributed among these distances:
27 87 0.29
28 2 0.01
29 2 0.01
31 20 0.07
32 31 0.10
33 134 0.45
34 24 0.08
ACGTcount: A:0.21, C:0.33, G:0.14, T:0.32
Consensus pattern (32 bp):
AAGTCCACAACTCCGTGGCACCTTTTCCTTTT
Found at i:2506262 original size:20 final size:20
Alignment explanation
Indices: 2506231--2506305 Score: 78
Period size: 20 Copynumber: 3.8 Consensus size: 20
2506221 TCATACCCTG
*
2506231 ATGTATCAATACATTTTTCA
1 ATGTATCGATACATTTTTCA
* * * *
2506251 ATATATCGATACATGTATGA
1 ATGTATCGATACATTTTTCA
* * *
2506271 ATGTATCGATATATTCTACA
1 ATGTATCGATACATTTTTCA
2506291 ATGTATCGATACATT
1 ATGTATCGATACATT
2506306 ATGTCTTTTT
Statistics
Matches: 42, Mismatches: 13, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.36, C:0.13, G:0.11, T:0.40
Consensus pattern (20 bp):
ATGTATCGATACATTTTTCA
Found at i:2506298 original size:40 final size:39
Alignment explanation
Indices: 2506231--2506308 Score: 102
Period size: 40 Copynumber: 2.0 Consensus size: 39
2506221 TCATACCCTG
* *
2506231 ATGTATCAATACATTTTTCAATATATCGATACATGTATGA
1 ATGTATCAATACATTCTACAATATATCGATACAT-TATGA
* * *
2506271 ATGTATCGATATATTCTACAATGTATCGATACATTATG
1 ATGTATCAATACATTCTACAATATATCGATACATTATG
2506309 TCTTTTTACC
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
39 4 0.12
40 29 0.88
ACGTcount: A:0.36, C:0.13, G:0.12, T:0.40
Consensus pattern (39 bp):
ATGTATCAATACATTCTACAATATATCGATACATTATGA
Found at i:2520338 original size:14 final size:15
Alignment explanation
Indices: 2520319--2520352 Score: 61
Period size: 14 Copynumber: 2.3 Consensus size: 15
2520309 CGTTACACCC
2520319 AAAAAAAAAAAA-CA
1 AAAAAAAAAAAAGCA
2520333 AAAAAAAAAAAAGCA
1 AAAAAAAAAAAAGCA
2520348 AAAAA
1 AAAAA
2520353 TAGAAGGGTC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 12 0.63
15 7 0.37
ACGTcount: A:0.91, C:0.06, G:0.03, T:0.00
Consensus pattern (15 bp):
AAAAAAAAAAAAGCA
Found at i:2520339 original size:15 final size:15
Alignment explanation
Indices: 2520319--2520352 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
2520309 CGTTACACCC
2520319 AAAAAAAAAAAACAA
1 AAAAAAAAAAAACAA
*
2520334 AAAAAAAAAAAGCAA
1 AAAAAAAAAAAACAA
2520349 AAAA
1 AAAA
2520353 TAGAAGGGTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.91, C:0.06, G:0.03, T:0.00
Consensus pattern (15 bp):
AAAAAAAAAAAACAA
Found at i:2520352 original size:13 final size:13
Alignment explanation
Indices: 2520318--2520343 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
2520308 CCGTTACACC
2520318 CAAAAAAAAAAAA
1 CAAAAAAAAAAAA
2520331 CAAAAAAAAAAAA
1 CAAAAAAAAAAAA
2520344 AGCAAAAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.92, C:0.08, G:0.00, T:0.00
Consensus pattern (13 bp):
CAAAAAAAAAAAA
Found at i:2522029 original size:32 final size:32
Alignment explanation
Indices: 2521576--2522718 Score: 1456
Period size: 32 Copynumber: 37.2 Consensus size: 32
2521566 TGTTCATCCC
*
2521576 TTTCAAAG-CC-CACAAGTCAGTGGC-ACTCC-
1 TTTCAAAGCCCACACAAGTCGGTGGCAAC-CCA
* * *
2521605 TTTCAAAGCCCACA-AA-TCAGTGGC-ACTCT
1 TTTCAAAGCCCACACAAGTCGGTGGCAACCCA
*
2521634 TTTCAAAG-CC-CACAAGTCAGTGGC-ACCC-
1 TTTCAAAGCCCACACAAGTCGGTGGCAACCCA
*
2521662 TTTCAAAG-CC-CACAAGTCAGTGGC-ACTCC-
1 TTTCAAAGCCCACACAAGTCGGTGGCAAC-CCA
* ** * *
2521691 TTTCAAAG-CC-TACAAGTTAGTGGC-ACTCT
1 TTTCAAAGCCCACACAAGTCGGTGGCAACCCA
* * *
2521720 TTTCAAAGCCCACA-AA-TCAGTGGC-ACTCT
1 TTTCAAAGCCCACACAAGTCGGTGGCAACCCA
* *
2521749 TTTTAAAG-CC-CACAAGTCAGTGGC-ACTCC-
1 TTTCAAAGCCCACACAAGTCGGTGGCAAC-CCA
*
2521778 TTTCAAAG-CC-CACAAGTCAGTGGC-ACTCC-
1 TTTCAAAGCCCACACAAGTCGGTGGCAAC-CCA
* * *
2521807 TTTCAAAGCCCACA-AA-TCAGTGGC-ACTCT
1 TTTCAAAGCCCACACAAGTCGGTGGCAACCCA
*
2521836 TTTCAAAG-CC-CACAAGTCAGTGGC-ACCC-
1 TTTCAAAGCCCACACAAGTCGGTGGCAACCCA
* ** *
2521864 TTTCAAAG-CC-CACAACTCATTGGC-ATCC-
1 TTTCAAAGCCCACACAAGTCGGTGGCAACCCA
*
2521892 TTTCAAAG-CC-CACAAGTCAGTGGC-ACTCC-
1 TTTCAAAGCCCACACAAGTCGGTGGCAAC-CCA
* * * *
2521921 TTTCAAAG-CC-CACAAGCCAGTGGC-ACTCT
1 TTTCAAAGCCCACACAAGTCGGTGGCAACCCA
* **
2521950 TTTCAGAG-CC-CACAAGTTAGTGGC-ACCC-
1 TTTCAAAGCCCACACAAGTCGGTGGCAACCCA
*
2521978 TTTCAGAG-CC-CACAAGTCGGTGGCAACCCA
1 TTTCAAAGCCCACACAAGTCGGTGGCAACCCA
2522008 TTTCAAAGCCCACACAAGTCGGTGGCAACCCA
1 TTTCAAAGCCCACACAAGTCGGTGGCAACCCA
*
2522040 TTCCAAAGCCCACACAAGTCGGTGGCAACCCA
1 TTTCAAAGCCCACACAAGTCGGTGGCAACCCA
*
2522072 TTCCAAAGCCCACACAAGTCGGTGGCAACCCA
1 TTTCAAAGCCCACACAAGTCGGTGGCAACCCA
2522104 TTTCAAAGCCCACACAAGTCGGTGGCAACCCA
1 TTTCAAAGCCCACACAAGTCGGTGGCAACCCA
2522136 TTTCAAAGCCCACACAAGTCGGTGGCAACCCA
1 TTTCAAAGCCCACACAAGTCGGTGGCAACCCA
*
2522168 TTCCAAAGCCCACACAAGTCGGTGGCAACCCA
1 TTTCAAAGCCCACACAAGTCGGTGGCAACCCA
*
2522200 TTCCAAAGCCCACACAAGTCGGTGGCAACCCA
1 TTTCAAAGCCCACACAAGTCGGTGGCAACCCA
*
2522232 TTCCAAAGCCCACACAAGTCGGTGGCAACCCA
1 TTTCAAAGCCCACACAAGTCGGTGGCAACCCA
2522264 TTTCAAAGCCCACACAAGTCGGTGGCAACCCA
1 TTTCAAAGCCCACACAAGTCGGTGGCAACCCA
2522296 TTTCAAAGCCCACACAAGTCGGTGGCAACCCA
1 TTTCAAAGCCCACACAAGTCGGTGGCAACCCA
2522328 TTTCAAAGCCCACACAAGTCGGTGGCAACCCA
1 TTTCAAAGCCCACACAAGTCGGTGGCAACCCA
2522360 TTTCAAAGCCCACACAAGTCGGTGGCAACCCA
1 TTTCAAAGCCCACACAAGTCGGTGGCAACCCA
* *
2522392 TTCCAAAGCCCACACAAGTCGGTGGCAACTCA
1 TTTCAAAGCCCACACAAGTCGGTGGCAACCCA
2522424 TTTCAAAGCCCACACAAGTCGGTGGCAACCCA
1 TTTCAAAGCCCACACAAGTCGGTGGCAACCCA
*
2522456 TTTCAAACCCCACACAAGTCGGTGGCAACCCA
1 TTTCAAAGCCCACACAAGTCGGTGGCAACCCA
*
2522488 TTTCAAAACCCACACAAGTCGGTGGCAACCCA
1 TTTCAAAGCCCACACAAGTCGGTGGCAACCCA
*
2522520 TTCCAAAGCCCACACAAGTCGGTGGCAACCCA
1 TTTCAAAGCCCACACAAGTCGGTGGCAACCCA
*
2522552 TTCCAAAGCCCACACAAGTCGGTGGCAACCCA
1 TTTCAAAGCCCACACAAGTCGGTGGCAACCCA
*
2522584 TTCCAAAGCCCACACAAGTCGGTGGCAACCCA
1 TTTCAAAGCCCACACAAGTCGGTGGCAACCCA
2522616 TTTCAAAGCCCACACAAGTCGGTGGCAACCCA
1 TTTCAAAGCCCACACAAGTCGGTGGCAACCCA
2522648 TTTCAAAGCCCACACAAGTCGGTGGCAACCCA
1 TTTCAAAGCCCACACAAGTCGGTGGCAACCCA
2522680 TTTCAAAGCCCACACAAGTCGGTGGCAACCCA
1 TTTCAAAGCCCACACAAGTCGGTGGCAACCCA
2522712 TTTCAAA
1 TTTCAAA
2522719 ACTAGGAAGA
Statistics
Matches: 1051, Mismatches: 40, Indels: 43
0.93 0.04 0.04
Matches are distributed among these distances:
27 6 0.01
28 112 0.11
29 220 0.21
30 20 0.02
31 7 0.01
32 686 0.65
ACGTcount: A:0.30, C:0.34, G:0.18, T:0.17
Consensus pattern (32 bp):
TTTCAAAGCCCACACAAGTCGGTGGCAACCCA
Found at i:2524114 original size:16 final size:17
Alignment explanation
Indices: 2524093--2524124 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
2524083 ACACAAACAA
2524093 AAAACAAAA-AAAAAAC
1 AAAACAAAATAAAAAAC
2524109 AAAACAAAATAAAAAA
1 AAAACAAAATAAAAAA
2524125 GAGAGAGTGC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.88, C:0.09, G:0.00, T:0.03
Consensus pattern (17 bp):
AAAACAAAATAAAAAAC
Found at i:2525486 original size:30 final size:30
Alignment explanation
Indices: 2525403--2525624 Score: 237
Period size: 30 Copynumber: 7.1 Consensus size: 30
2525393 CAAATCTCTC
* *
2525403 TTTTCTAAGTCCATGACTTAGTGGCATCTTT
1 TTTTCTAAGTCCACGACTCAGTGGCATC-TT
* * **
2525434 TTCTTCAAAATCCATAACTCAGTGGCATCTT
1 TT-TTCTAAGTCCACGACTCAGTGGCATCTT
* *
2525465 TTTTCTAAGTCCACGACTCAGTGGCGTCTC
1 TTTTCTAAGTCCACGACTCAGTGGCATCTT
* *
2525495 TTTCCAAAGTCCACGACTCAGTGGCATCTT
1 TTTTCTAAGTCCACGACTCAGTGGCATCTT
* *
2525525 TTCTTCAAAGTGCACGACTCAGTGGCATCTT
1 TT-TTCTAAGTCCACGACTCAGTGGCATCTT
2525556 TTTTCTTCCAAGTCCACGACTCAGTGGCATCTT
1 TTTTC-T--AAGTCCACGACTCAGTGGCATCTT
*
2525589 TTTTCTTCAAAGTCCACGACTCCGTGGCACTCTT
1 TTTTC-T--AAGTCCACGACTCAGTGGCA-TCTT
2525623 TT
1 TT
2525625 AAGCCCACAA
Statistics
Matches: 165, Mismatches: 20, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
30 53 0.32
31 34 0.21
32 22 0.13
33 50 0.30
34 6 0.04
ACGTcount: A:0.21, C:0.27, G:0.16, T:0.36
Consensus pattern (30 bp):
TTTTCTAAGTCCACGACTCAGTGGCATCTT
Found at i:2525556 original size:91 final size:93
Alignment explanation
Indices: 2525399--2525624 Score: 285
Period size: 91 Copynumber: 2.4 Consensus size: 93
2525389 TCTTCAAATC
* * * * *
2525399 TCTCTTTTCTAAGTCCATGACTTAGTGGCATCTTTTTCTTCAAAATCCATAACTCAGTGGCATCT
1 TCTCTTTCCAAAGTCCACGACTCAGTGGCATC-TTTTCTTCAAAATCCACAACTCAGTGGCATCT
*
2525464 TTTTTC-T-AAGTCCACGACTCAGTGGCG
65 TTTTTCTTCAAGTCCACGACTCAGTGGCA
* * *
2525491 TCTCTTTCCAAAGTCCACGACTCAGTGGCATCTTTTCTTCAAAGTGCACGACTCAGTGGCATCTT
1 TCTCTTTCCAAAGTCCACGACTCAGTGGCATCTTTTCTTCAAAATCCACAACTCAGTGGCATCTT
2525556 TTTTCTTCCAAGTCCACGACTCAGTGGCA
66 TTTTCTT-CAAGTCCACGACTCAGTGGCA
* *
2525585 TCTTTTTTCTTCAAAGTCCACGACTCCGTGGCACTCTTTT
1 TC-TCTTTC--CAAAGTCCACGACTCAGTGGCA-TCTTTT
2525625 AAGCCCACAA
Statistics
Matches: 116, Mismatches: 11, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
91 34 0.29
92 29 0.25
94 21 0.18
95 5 0.04
97 21 0.18
98 6 0.05
ACGTcount: A:0.20, C:0.28, G:0.15, T:0.36
Consensus pattern (93 bp):
TCTCTTTCCAAAGTCCACGACTCAGTGGCATCTTTTCTTCAAAATCCACAACTCAGTGGCATCTT
TTTTCTTCAAGTCCACGACTCAGTGGCA
Found at i:2525632 original size:27 final size:27
Alignment explanation
Indices: 2525602--2525911 Score: 143
Period size: 27 Copynumber: 10.4 Consensus size: 27
2525592 TCTTCAAAGT
*
2525602 CCACGACTCCGTGGCACTCTTTTAAGC
1 CCACAACTCCGTGGCACTCTTTTAAGC
* * *
2525629 CCACAACTCTGTGGCCCTATGTTCCTTTAAAGC
1 CCACAACTCCGTGG--C-A--CT-CTTTTAAGC
* *
2525662 CCACAACTCCGTGGCACCCTTTTAAGT
1 CCACAACTCCGTGGCACTCTTTTAAGC
*
2525689 CCACAACTCCGTGGCATCTTTTCCCTTTTAAGT
1 CCACAACTCCGTGGCA-C---T--CTTTTAAGC
* *
2525722 CCATAACTCCGTGGCACCTTGTTCCTTTTAAGT
1 CCACAACTCCGTGGCA-C----T-CTTTTAAGC
*
2525755 CCACAACTCCGTGGCACCTTTTCTTTTTAAGT
1 CCACAACTCCGTGGCA-C---TC-TTTTAAGC
* * *
2525787 CTACCACTCCGTGGCACCCTTTTAAGC
1 CCACAACTCCGTGGCACTCTTTTAAGC
* * *
2525814 CCACAACTCTGTGACACTCTTTTTCCCTTTAAGT
1 CCACAACTCCGTGGCACTC----T---TTTAAGC
* * **
2525848 CCACAACTCAGTGGCACCCTTTTAAAT
1 CCACAACTCCGTGGCACTCTTTTAAGC
* * *
2525875 CCACAACTCCGTGGCACCCTTTTAGGT
1 CCACAACTCCGTGGCACTCTTTTAAGC
2525902 CCACAACTCC
1 CCACAACTCC
2525912 ACGGCATCTT
Statistics
Matches: 230, Mismatches: 32, Indels: 42
0.76 0.11 0.14
Matches are distributed among these distances:
27 96 0.42
28 2 0.01
29 1 0.00
30 3 0.01
31 4 0.02
32 26 0.11
33 73 0.32
34 25 0.11
ACGTcount: A:0.21, C:0.35, G:0.14, T:0.31
Consensus pattern (27 bp):
CCACAACTCCGTGGCACTCTTTTAAGC
Found at i:2525643 original size:124 final size:122
Alignment explanation
Indices: 2525417--2525643 Score: 296
Period size: 124 Copynumber: 1.8 Consensus size: 122
2525407 CTAAGTCCAT
* *
2525417 GACTTAGTGGCATCTTTTTCTTCAAAATCCATAACTCAGTGGCATCTTTTTTCTAAGTCCACGAC
1 GACTCAGTGGCATCTTTTTCTTCAAAATCCACAACTCAGTGGCATCTTTTTTCTAAGTCCACGAC
* * *
2525482 TCAGTGGCGTCTCTTTCCAAAGTCCACGACTCAGTGGCATCTTTTCTTCAAAGTGCAC
66 TCAGTGGCGACTCTTT-CAAAGCCCACAACTCAGTGGCATCTTTTCTTCAAAGTGCAC
* * *
2525540 GACTCAGTGGCATCTTTTTTCTTCCAAGTCCACGACTCAGTGGCATCTTTTTTCTTCAAAGTCCA
1 GACTCAGTGGCATC-TTTTTCTTCAAAATCCACAACTCAGTGGCATCTTTTTTC-T--AAGTCCA
* * *
2525605 CGACTCCGTGGC-ACTCTTT-TAAGCCCACAACTCTGTGGC
62 CGACTCAGTGGCGACTCTTTCAAAGCCCACAACTCAGTGGC
2525644 CCTATGTTCC
Statistics
Matches: 89, Mismatches: 11, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
123 13 0.15
124 51 0.57
125 1 0.01
126 6 0.07
127 18 0.20
ACGTcount: A:0.21, C:0.29, G:0.17, T:0.33
Consensus pattern (122 bp):
GACTCAGTGGCATCTTTTTCTTCAAAATCCACAACTCAGTGGCATCTTTTTTCTAAGTCCACGAC
TCAGTGGCGACTCTTTCAAAGCCCACAACTCAGTGGCATCTTTTCTTCAAAGTGCAC
Found at i:2525720 original size:33 final size:32
Alignment explanation
Indices: 2525423--2525940 Score: 281
Period size: 33 Copynumber: 16.9 Consensus size: 32
2525413 CCATGACTTA
* ** * * *
2525423 GTGGCATCTTTTTCTTCAAAATCCATAACTCA
1 GTGGCATCTTTTCCTTTTAAGTCCACAACTCC
* * *
2525455 GTGGCATCTTTT--TTCTAAGTCCACGACTCA
1 GTGGCATCTTTTCCTTTTAAGTCCACAACTCC
* * * *
2525485 GTGGCGTCTCTTTCC---AAAGTCCACGACTCA
1 GTGGCATCT-TTTCCTTTTAAGTCCACAACTCC
** * * *
2525515 GTGGCATCTTTT-CTTCAAAGTGCACGACTCA
1 GTGGCATCTTTTCCTTTTAAGTCCACAACTCC
* ** * *
2525546 GTGGCATCTTTTTTCTTCCAAGTCCACGACTCA
1 GTGGCATC-TTTTCCTTTTAAGTCCACAACTCC
* ** *
2525579 GTGGCATCTTTTTTCTTCAAAGTCCACGACTCC
1 GTGGCATC-TTTTCCTTTTAAGTCCACAACTCC
* *
2525612 GTGGCA-C---T-CTTTTAAGCCCACAACTCT
1 GTGGCATCTTTTCCTTTTAAGTCCACAACTCC
* * *
2525639 GTGGC-CCTATGTTCCTTTAAAGCCCACAACTCC
1 GTGGCATCT-T-TTCCTTTTAAGTCCACAACTCC
2525672 GTGGCA-C----CCTTTTAAGTCCACAACTCC
1 GTGGCATCTTTTCCTTTTAAGTCCACAACTCC
*
2525699 GTGGCATCTTTTCCCTTTTAAGTCCATAACTCC
1 GTGGCATCTTTT-CCTTTTAAGTCCACAACTCC
*
2525732 GTGGCACCTTGTTCCTTTTAAGTCCACAACTCC
1 GTGGCATCTT-TTCCTTTTAAGTCCACAACTCC
* * * *
2525765 GTGGCACCTTTTCTTTTTAAGTCTACCACTCC
1 GTGGCATCTTTTCCTTTTAAGTCCACAACTCC
* *
2525797 GTGGCA-C----CCTTTTAAGCCCACAACTCT
1 GTGGCATCTTTTCCTTTTAAGTCCACAACTCC
* * *
2525824 GTGACACTCTTTTTCCCTTTAAGTCCACAACTCA
1 GTGGCA-TC-TTTTCCTTTTAAGTCCACAACTCC
*
2525858 GTGGCA-C----CCTTTTAAATCCACAACTCC
1 GTGGCATCTTTTCCTTTTAAGTCCACAACTCC
*
2525885 GTGGCA-C----CCTTTTAGGTCCACAACTCC
1 GTGGCATCTTTTCCTTTTAAGTCCACAACTCC
** * *
2525912 ACGGCATCTTTCTTCTTTTAAGCCCACAA
1 GTGGCATCTTT-TCCTTTTAAGTCCACAA
2525941 GTTAGTGGCA
Statistics
Matches: 403, Mismatches: 47, Indels: 71
0.77 0.09 0.14
Matches are distributed among these distances:
27 110 0.27
28 4 0.01
29 4 0.01
30 44 0.11
31 26 0.06
32 44 0.11
33 147 0.36
34 24 0.06
ACGTcount: A:0.21, C:0.32, G:0.14, T:0.33
Consensus pattern (32 bp):
GTGGCATCTTTTCCTTTTAAGTCCACAACTCC
Found at i:2525720 original size:93 final size:86
Alignment explanation
Indices: 2525598--2525910 Score: 349
Period size: 93 Copynumber: 3.5 Consensus size: 86
2525588 TTTTTCTTCA
* * *
2525598 AAGTCCACGACTCCGTGGCACTCTTTTAAGCCCACAACTCTGTGGC-CCTATGTTCCTTTAAAGC
1 AAGTCCACAACTCCGTGGCACCCTTTTAAGCCCACAACTCTGTGGCACCT-TGTTCCTTT-AAGT
2525662 CCACAACTCCGTGGCACCCTTTT
64 CCACAACTCCGTGGCACCCTTTT
* * *
2525685 AAGTCCACAACTCCGTGGCATCTTTTCCCTTTTAAGTCCATAACTCCGTGGCACCTTGTTCCTTT
1 AAGTCCACAACTCCGTGGCA------CCCTTTTAAGCCCACAACTCTGTGGCACCTTGTTCC-TT
2525750 TAAGTCCACAACTCCGTGGCACCTTTTCTTTTT
59 TAAGTCCACAACTCCGTGGCACC----C-TTTT
* * * *
2525783 AAGTCTACCACTCCGTGGCACCCTTTTAAGCCCACAACTCTGTGACACTCTTTTTCCCTTTAAGT
1 AAGTCCACAACTCCGTGGCACCCTTTTAAGCCCACAACTCTGTGGCAC-CTTGTT-CCTTTAAGT
*
2525848 CCACAACTCAGTGGCACCCTTTT
64 CCACAACTCCGTGGCACCCTTTT
* * *
2525871 AAATCCACAACTCCGTGGCACCCTTTTAGGTCCACAACTC
1 AAGTCCACAACTCCGTGGCACCCTTTTAAGCCCACAACTC
2525911 CACGGCATCT
Statistics
Matches: 192, Mismatches: 19, Indels: 29
0.80 0.08 0.12
Matches are distributed among these distances:
87 19 0.10
88 39 0.20
89 1 0.01
92 24 0.12
93 78 0.41
94 8 0.04
97 1 0.01
98 22 0.11
ACGTcount: A:0.21, C:0.35, G:0.14, T:0.31
Consensus pattern (86 bp):
AAGTCCACAACTCCGTGGCACCCTTTTAAGCCCACAACTCTGTGGCACCTTGTTCCTTTAAGTCC
ACAACTCCGTGGCACCCTTTT
Found at i:2525761 original size:66 final size:61
Alignment explanation
Indices: 2525565--2525890 Score: 308
Period size: 60 Copynumber: 5.3 Consensus size: 61
2525555 TTTTTCTTCC
* * ** ** * *
2525565 AAGTCCACGACTCAGTGGCATCTTTTTTCTTCAAAGTCCACGACTCCGTGGCA-CTCTTTT
1 AAGTCCACAACTCCGTGGCATCTTTTCCCTTTTAAGTCCACAACTCCGTGGCACCCCTTTT
* * * * *
2525625 AAGCCCACAACTCTGTGGC-CCTATGTT-CCTTTAAAGCCCACAACTCCGTGGCA-CCCTTTT
1 AAGTCCACAACTCCGTGGCATCT-T-TTCCCTTTTAAGTCCACAACTCCGTGGCACCCCTTTT
*
2525685 AAGTCCACAACTCCGTGGCATCTTTTCCCTTTTAAGTCCATAACTCCGTGGCACCTTGTTCCTTT
1 AAGTCCACAACTCCGTGGCATCTTTTCCCTTTTAAGTCCACAACTCCGTGGCACC-----CCTTT
2525750 T
61 T
* * * *
2525751 AAGTCCACAACTCCGTGGCACCTTTT-CTTTTTAAGTCTACCACTCCGTGGCA-CCCTTTT
1 AAGTCCACAACTCCGTGGCATCTTTTCCCTTTTAAGTCCACAACTCCGTGGCACCCCTTTT
* * * *
2525810 AAGCCCACAACTCTGTGACACTCTTTTTCCC-TTTAAGTCCACAACTCAGTGGCA-CCCTTTT
1 AAGTCCACAACTCCGTGGCA-TC-TTTTCCCTTTTAAGTCCACAACTCCGTGGCACCCCTTTT
*
2525871 AAATCCACAACTCCGTGGCA
1 AAGTCCACAACTCCGTGGCA
2525891 CCCTTTTAGG
Statistics
Matches: 221, Mismatches: 32, Indels: 25
0.79 0.12 0.09
Matches are distributed among these distances:
59 27 0.12
60 87 0.39
61 52 0.24
62 1 0.00
64 1 0.00
65 22 0.10
66 31 0.14
ACGTcount: A:0.21, C:0.33, G:0.14, T:0.31
Consensus pattern (61 bp):
AAGTCCACAACTCCGTGGCATCTTTTCCCTTTTAAGTCCACAACTCCGTGGCACCCCTTTT
Found at i:2526185 original size:20 final size:20
Alignment explanation
Indices: 2526154--2526228 Score: 78
Period size: 20 Copynumber: 3.8 Consensus size: 20
2526144 TCATACCCTG
*
2526154 ATGTATCAATACATTTTTCA
1 ATGTATCGATACATTTTTCA
* * * *
2526174 ATATATCGATACATGTATGA
1 ATGTATCGATACATTTTTCA
* * *
2526194 ATGTATCGATATATTCTACA
1 ATGTATCGATACATTTTTCA
2526214 ATGTATCGATACATT
1 ATGTATCGATACATT
2526229 ATGTCTTTTT
Statistics
Matches: 42, Mismatches: 13, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.36, C:0.13, G:0.11, T:0.40
Consensus pattern (20 bp):
ATGTATCGATACATTTTTCA
Found at i:2526221 original size:40 final size:39
Alignment explanation
Indices: 2526154--2526231 Score: 102
Period size: 40 Copynumber: 2.0 Consensus size: 39
2526144 TCATACCCTG
* *
2526154 ATGTATCAATACATTTTTCAATATATCGATACATGTATGA
1 ATGTATCAATACATTCTACAATATATCGATACAT-TATGA
* * *
2526194 ATGTATCGATATATTCTACAATGTATCGATACATTATG
1 ATGTATCAATACATTCTACAATATATCGATACATTATG
2526232 TCTTTTTACC
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
39 4 0.12
40 29 0.88
ACGTcount: A:0.36, C:0.13, G:0.12, T:0.40
Consensus pattern (39 bp):
ATGTATCAATACATTCTACAATATATCGATACATTATGA
Found at i:2529522 original size:28 final size:29
Alignment explanation
Indices: 2529478--2529554 Score: 77
Period size: 28 Copynumber: 2.6 Consensus size: 29
2529468 GACACATCCT
* *
2529478 TTTCAAAAGCCCGCAAGTCAGTGGCAA-CC
1 TTTCAAAAGCACACAAGTCAGT-GCAACCC
**
2529507 -TTCAAAAGCACACAAGTTGGTGCAACCC
1 TTTCAAAAGCACACAAGTCAGTGCAACCC
2529535 TTTCAAAAGCCCACACAAGT
1 TTTCAAAAG--CACACAAGT
2529555 TGGTGGCGTC
Statistics
Matches: 40, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
27 4 0.10
28 19 0.47
29 8 0.20
31 9 0.22
ACGTcount: A:0.35, C:0.30, G:0.17, T:0.18
Consensus pattern (29 bp):
TTTCAAAAGCACACAAGTCAGTGCAACCC
Found at i:2529637 original size:48 final size:48
Alignment explanation
Indices: 2529566--2530034 Score: 371
Period size: 48 Copynumber: 9.9 Consensus size: 48
2529556 GGTGGCGTCT
* * *
2529566 TCTTCTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTG
1 TCTT-TAAGACCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTA
* * *
2529615 TCTTTAAAACCAATGTCGCTGGCCTTGAATAAGCACATTGG---C--A
1 TCTTTAAGACCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTA
* * * * *
2529658 ----TAAGCCCAATATCGCTAGCCTTGAATCAGCATATTGGCACATTG
1 TCTTTAAGACCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTA
*
2529702 TCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATT-G-A-C--A
1 TCTTTAAGACCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTA
* * *
2529745 -C---AAGCCCAGTATCGCTGGCCTTGAATCAGCATATTGGCACCTTTA
1 TCTTTAAGACCAATATCGCTGGCCTTGAATCAGCACATTGGCACC-TTA
* * * * * *
2529790 TCTTTCAGACCGATGTCGTTGGCCTTGAATTAGCACATCGGCACCTCAACTA
1 TCTTTAAGACCAATATCGCTGGCCTTGAATCAGCACATTGGCACCT----TA
* * * *
2529842 TCTTTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACGTCA
1 TCTTTAAGACCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTA
* * * *
2529890 TCTTTAAGTCCAATGTCACTGGCCTTGAATCAGTACATTGGCACCTTCA
1 TCTTTAAGACCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTT-A
* * * **
2529939 TCTTTAAGTCCAATATCGCTGGCCCTGAATCAGCATATTGGTGCCTTCGTCA
1 TCTTTAAGACCAATATCGCTGGCCTTGAATCAGCACATTGGCACC-T--T-A
* * *
2529991 TCTTTAAAACCCAATATCGTTGGCCTTGAATCAACACATTGGCA
1 TCTTTAAGA-CCAATATCGCTGGCCTTGAATCAGCACATTGGCA
2530035 TTCTTCTCAT
Statistics
Matches: 327, Mismatches: 65, Indels: 52
0.74 0.15 0.12
Matches are distributed among these distances:
39 61 0.19
40 1 0.00
41 1 0.00
42 2 0.01
45 2 0.01
46 2 0.01
47 1 0.00
48 105 0.32
49 74 0.23
50 1 0.00
52 49 0.15
53 28 0.09
ACGTcount: A:0.26, C:0.27, G:0.18, T:0.29
Consensus pattern (48 bp):
TCTTTAAGACCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTA
Found at i:2529679 original size:39 final size:39
Alignment explanation
Indices: 2529624--2529783 Score: 131
Period size: 39 Copynumber: 3.9 Consensus size: 39
2529614 GTCTTTAAAA
*
2529624 CCAATGTCGCTGGCCTTGAATAAGCACATTGGCATAAGC
1 CCAATATCGCTGGCCTTGAATAAGCACATTGGCATAAGC
* * * *
2529663 CCAATATCGCTAGCCTTGAATCAGCATATTGGCACATTGTCTTTAAGA
1 CCAATATCGCTGGCCTTGAAT----A-A---GCACATTGGC-ATAAGC
* * * *
2529711 CCAATGTCGCTGGCCTTGAATCAGCACATTGACACAAGC
1 CCAATATCGCTGGCCTTGAATAAGCACATTGGCATAAGC
* * *
2529750 CCAGTATCGCTGGCCTTGAATCAGCATATTGGCA
1 CCAATATCGCTGGCCTTGAATAAGCACATTGGCA
2529784 CCTTTATCTT
Statistics
Matches: 96, Mismatches: 16, Indels: 18
0.74 0.12 0.14
Matches are distributed among these distances:
39 52 0.54
40 9 0.09
43 2 0.02
44 1 0.01
47 9 0.09
48 23 0.24
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.26
Consensus pattern (39 bp):
CCAATATCGCTGGCCTTGAATAAGCACATTGGCATAAGC
Found at i:2529717 original size:87 final size:87
Alignment explanation
Indices: 2529571--2529832 Score: 389
Period size: 87 Copynumber: 3.0 Consensus size: 87
2529561 CGTCTTCTTC
* *
2529571 TAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAAACCAATGTCGCTG
1 TAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACATTGTCTTTAAGACCAATGTCGCTG
2529636 GCCTTGAATAAGCACATTGGCA
66 GCCTTGAATAAGCACATTGGCA
*
2529658 TAAGCCCAATATCGCTAGCCTTGAATCAGCATATTGGCACATTGTCTTTAAGACCAATGTCGCTG
1 TAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACATTGTCTTTAAGACCAATGTCGCTG
* *
2529723 GCCTTGAATCAGCACATTGACA
66 GCCTTGAATAAGCACATTGGCA
* * * * * * *
2529745 CAAGCCCAGTATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTCAGACCGATGTCGTT
1 TAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCA-CATTGTCTTTAAGACCAATGTCGCT
* *
2529810 GGCCTTGAATTAGCACATCGGCA
65 GGCCTTGAATAAGCACATTGGCA
2529833 CCTCAACTAT
Statistics
Matches: 158, Mismatches: 16, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
87 118 0.75
88 40 0.25
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (87 bp):
TAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACATTGTCTTTAAGACCAATGTCGCTG
GCCTTGAATAAGCACATTGGCA
Found at i:2529961 original size:49 final size:49
Alignment explanation
Indices: 2529746--2530127 Score: 289
Period size: 52 Copynumber: 7.6 Consensus size: 49
2529736 ACATTGACAC
* * *
2529746 AAGCCCAGTATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTT
1 AAGCCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTT
* * * * * * * *
2529795 CAGACCGATGTCGTTGGCCTTGAATTAGCACATCGGCACCTCAACTATCTTT
1 AAGCCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCT--TC-ATCTTT
* *
2529847 AAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCA-CGTCATCTTT
1 AAGCCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTT
* * * *
2529895 AAGTCCAATGTCACTGGCCTTGAATCAGTACATTGGCACCTTCATCTTT
1 AAGCCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTT
* * * **
2529944 AAGTCCAATATCGCTGGCCCTGAATCAGCATATTGGTGCCTTCGTCATCTTT
1 AAGCCCAATATCGCTGGCCTTGAATCAGCACATTGGCACC-T--TCATCTTT
* * * * *
2529996 AAAACCCAATATCGTTGGCCTTGAATCAACACATTGGCATTCTTCTCATCTTC
1 -AAGCCCAATATCGCTGGCCTTGAATCAGCACATTGGCA--CCT-TCATCTTT
* * * * * * * *
2530049 AAGTCTAATGTCGATGACCGTGAATCAGCACATTGACATTCTTTACATCTTT
1 AAGCCCAATATCGCTGGCCTTGAATCAGCACATTGGCA--CCTT-CATCTTT
* ** *
2530101 AAACCCAATATCATTGGCCGTGAATCA
1 AAGCCCAATATCGCTGGCCTTGAATCA
2530128 ACGTATTGGT
Statistics
Matches: 260, Mismatches: 62, Indels: 19
0.76 0.18 0.06
Matches are distributed among these distances:
48 39 0.15
49 75 0.29
50 1 0.00
51 2 0.01
52 104 0.40
53 37 0.14
54 1 0.00
55 1 0.00
ACGTcount: A:0.26, C:0.26, G:0.17, T:0.31
Consensus pattern (49 bp):
AAGCCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTT
Done.