Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold29
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 5511024
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 57772 characters in sequence are not A, C, G, or T
File 26 of 34
Found at i:3999583 original size:40 final size:40
Alignment explanation
Indices: 3999536--3999616 Score: 162
Period size: 40 Copynumber: 2.0 Consensus size: 40
3999526 ACAGTCCCAT
3999536 TATATGCAAACTCAATATGCGGCAAACATCTCTCCCATTG
1 TATATGCAAACTCAATATGCGGCAAACATCTCTCCCATTG
3999576 TATATGCAAACTCAATATGCGGCAAACATCTCTCCCATTG
1 TATATGCAAACTCAATATGCGGCAAACATCTCTCCCATTG
3999616 T
1 T
3999617 TTTAAGTTCT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.32, C:0.27, G:0.12, T:0.28
Consensus pattern (40 bp):
TATATGCAAACTCAATATGCGGCAAACATCTCTCCCATTG
Found at i:4002931 original size:12 final size:11
Alignment explanation
Indices: 4002909--4002984 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
4002899 AGAGAAAGAA
*
4002909 GAGAGAGGAGG
1 GAGATAGGAGG
4002920 GATGATAGGAGG
1 GA-GATAGGAGG
*
4002932 AGAGACAGGA--
1 -GAGATAGGAGG
*
4002942 GAGATAGTA--
1 GAGATAGGAGG
4002951 GAGATAGGAGG
1 GAGATAGGAGG
4002962 GATGATAGGAGG
1 GA-GATAGGAGG
*
4002974 AGAGACAGGAG
1 -GAGATAGGAG
4002985 AGATAATAGA
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 4 0.08
12 30 0.57
13 4 0.08
ACGTcount: A:0.39, C:0.03, G:0.49, T:0.09
Consensus pattern (11 bp):
GAGATAGGAGG
Found at i:4002941 original size:24 final size:24
Alignment explanation
Indices: 4002908--4002993 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
4002898 AAGAGAAAGA
*
4002908 AGAGAGAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
*
4002932 AGAGACAGGA--GA-GAT---AGT
1 AGAGACAGGAGGGATGATAGGAGG
*
4002950 AGAGATAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
* *
4002974 AGAGACAGGAGAGATAATAG
1 AGAGACAGGAGGGATGATAG
4002994 AGAGAGGAGG
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 11 0.22
20 2 0.04
21 6 0.12
22 2 0.04
24 28 0.57
ACGTcount: A:0.42, C:0.02, G:0.45, T:0.10
Consensus pattern (24 bp):
AGAGACAGGAGGGATGATAGGAGG
Found at i:4002960 original size:42 final size:42
Alignment explanation
Indices: 4002899--4003017 Score: 193
Period size: 42 Copynumber: 2.8 Consensus size: 42
4002889 TAGCCCTCAA
* *
4002899 AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
*
4002941 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
* *
4002983 AGAGATAATAGAGAGAGGAGGGATGACAGGAGGAG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAG
4003018 GAGAGAAGAA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 71 1.00
ACGTcount: A:0.43, C:0.03, G:0.46, T:0.08
Consensus pattern (42 bp):
AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
Found at i:4013504 original size:9 final size:9
Alignment explanation
Indices: 4013492--4013585 Score: 74
Period size: 9 Copynumber: 11.1 Consensus size: 9
4013482 CTCTCTCTAT
4013492 TATCTCTCC
1 TATCTCTCC
4013501 TATCTCTCC
1 TATCTCTCC
*
4013510 T-TCTAT--
1 TATCTCTCC
* *
4013516 TATCCCTAC
1 TATCTCTCC
*
4013525 TATCTCTAC
1 TATCTCTCC
4013534 TATCTCTCC
1 TATCTCTCC
*
4013543 T-TCTAT-C
1 TATCTCTCC
* *
4013550 T-TCCCTTC
1 TATCTCTCC
*
4013558 TATCTCTAC
1 TATCTCTCC
4013567 TATCTCTCC
1 TATCTCTCC
4013576 TATCTCTCC
1 TATCTCTCC
4013585 T
1 T
4013586 CATATCATCC
Statistics
Matches: 69, Mismatches: 11, Indels: 10
0.77 0.12 0.11
Matches are distributed among these distances:
6 1 0.01
7 8 0.12
8 10 0.14
9 50 0.72
ACGTcount: A:0.14, C:0.39, G:0.00, T:0.47
Consensus pattern (9 bp):
TATCTCTCC
Found at i:4013515 original size:12 final size:12
Alignment explanation
Indices: 4013500--4013564 Score: 50
Period size: 12 Copynumber: 5.7 Consensus size: 12
4013490 ATTATCTCTC
4013500 CTATCTCTCCTT
1 CTATCTCTCCTT
*
4013512 CTAT-TATCC--
1 CTATCTCTCCTT
* *
4013521 CTA-CTATCTCTA
1 CTATCTCTC-CTT
4013533 CTATCTCTCCTT
1 CTATCTCTCCTT
4013545 CTATCT-TCCCTT
1 CTATCTCT-CCTT
4013557 CTATCTCT
1 CTATCTCT
4013565 ACTATCTCTC
Statistics
Matches: 43, Mismatches: 3, Indels: 13
0.73 0.05 0.22
Matches are distributed among these distances:
9 7 0.16
10 1 0.02
11 5 0.12
12 25 0.58
13 5 0.12
ACGTcount: A:0.14, C:0.38, G:0.00, T:0.48
Consensus pattern (12 bp):
CTATCTCTCCTT
Found at i:4013529 original size:33 final size:33
Alignment explanation
Indices: 4013492--4013576 Score: 136
Period size: 33 Copynumber: 2.6 Consensus size: 33
4013482 CTCTCTCTAT
*
4013492 TATCTCTCCTATCTCTCCTTCTAT-TATCCCTAC
1 TATCTCTACTATCTCTCCTTCTATCT-TCCCTAC
*
4013525 TATCTCTACTATCTCTCCTTCTATCTTCCCTTC
1 TATCTCTACTATCTCTCCTTCTATCTTCCCTAC
4013558 TATCTCTACTATCTCTCCT
1 TATCTCTACTATCTCTCCT
4013577 ATCTCTCCTC
Statistics
Matches: 49, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
33 48 0.98
34 1 0.02
ACGTcount: A:0.14, C:0.39, G:0.00, T:0.47
Consensus pattern (33 bp):
TATCTCTACTATCTCTCCTTCTATCTTCCCTAC
Found at i:4013555 original size:75 final size:75
Alignment explanation
Indices: 4013464--4013606 Score: 207
Period size: 75 Copynumber: 1.9 Consensus size: 75
4013454 TTCTTCTCTC
* * *
4013464 CTCCTCCTATCGTCCCTCCTCTCTCTATTATCTCTCCTATCTCTCCTTC-TATTATCCCTACTAT
1 CTCCTCCTATCGTCCCTCCTATCTCTACTATCTCTCCTATCTCTCC-TCATATCATCCCTACTAT
4013528 CTCTACTATCT
65 CTCTACTATCT
* * * *
4013539 CTCCTTCTATCTTCCCTTCTATCTCTACTATCTCTCCTATCTCTCCTCATATCATCCCTCCTATC
1 CTCCTCCTATCGTCCCTCCTATCTCTACTATCTCTCCTATCTCTCCTCATATCATCCCTACTATC
4013604 TCT
66 TCT
4013607 TCTTTCCTTT
Statistics
Matches: 60, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
74 2 0.03
75 58 0.97
ACGTcount: A:0.13, C:0.42, G:0.01, T:0.44
Consensus pattern (75 bp):
CTCCTCCTATCGTCCCTCCTATCTCTACTATCTCTCCTATCTCTCCTCATATCATCCCTACTATC
TCTACTATCT
Found at i:4013567 original size:42 final size:42
Alignment explanation
Indices: 4013516--4013606 Score: 130
Period size: 42 Copynumber: 2.2 Consensus size: 42
4013506 CTCCTTCTAT
* * *
4013516 TATCCCTACTATCTCTACTATCTCTCCTTC-TATCTTCCCTTC
1 TATCTCTACTATCTCTACTATCTCTCC-TCATATCATCCCTCC
*
4013558 TATCTCTACTATCTCTCCTATCTCTCCTCATATCATCCCTCC
1 TATCTCTACTATCTCTACTATCTCTCCTCATATCATCCCTCC
4013600 TATCTCT
1 TATCTCT
4013607 TCTTTCCTTT
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
41 2 0.05
42 42 0.95
ACGTcount: A:0.15, C:0.41, G:0.00, T:0.44
Consensus pattern (42 bp):
TATCTCTACTATCTCTACTATCTCTCCTCATATCATCCCTCC
Found at i:4017326 original size:28 final size:29
Alignment explanation
Indices: 4017295--4017356 Score: 74
Period size: 28 Copynumber: 2.2 Consensus size: 29
4017285 TGAAATCCAC
*
4017295 AAGAAATATGAAAGCAAACA-AAAT-AATA
1 AAGAAATATCAAAGCAAA-AGAAATGAATA
* *
4017323 AAGAAATTTCAAAGGAAAAGAAATGAATA
1 AAGAAATATCAAAGCAAAAGAAATGAATA
4017352 AAGAA
1 AAGAA
4017357 GAATAAAGGT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
27 1 0.03
28 19 0.66
29 9 0.31
ACGTcount: A:0.66, C:0.05, G:0.15, T:0.15
Consensus pattern (29 bp):
AAGAAATATCAAAGCAAAAGAAATGAATA
Found at i:4017508 original size:52 final size:53
Alignment explanation
Indices: 4017434--4017546 Score: 201
Period size: 52 Copynumber: 2.2 Consensus size: 53
4017424 TTCTTTTTTA
* *
4017434 TTTTTTTTTGAAGATGGCAAAGGTTTATACTACTAGAACACTTTTTTTT-CCT
1 TTTTTTTTTGAAGATGGAAAAGGGTTATACTACTAGAACACTTTTTTTTGCCT
4017486 TTTTTTTTTGAAGATGGAAAAGGGTTATACTACTAGAACACTTTTTTTTGCCT
1 TTTTTTTTTGAAGATGGAAAAGGGTTATACTACTAGAACACTTTTTTTTGCCT
4017539 TTTTTTTT
1 TTTTTTTT
4017547 AATGGATGAT
Statistics
Matches: 58, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
52 47 0.81
53 11 0.19
ACGTcount: A:0.24, C:0.12, G:0.14, T:0.50
Consensus pattern (53 bp):
TTTTTTTTTGAAGATGGAAAAGGGTTATACTACTAGAACACTTTTTTTTGCCT
Found at i:4021427 original size:16 final size:16
Alignment explanation
Indices: 4021406--4021437 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
4021396 AGGTAAGGAG
*
4021406 TTTTCATGGTTTAGCA
1 TTTTCATGGCTTAGCA
4021422 TTTTCATGGCTTAGCA
1 TTTTCATGGCTTAGCA
4021438 AGTTTTTATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.19, C:0.16, G:0.19, T:0.47
Consensus pattern (16 bp):
TTTTCATGGCTTAGCA
Found at i:4022164 original size:70 final size:70
Alignment explanation
Indices: 4022083--4022239 Score: 305
Period size: 70 Copynumber: 2.2 Consensus size: 70
4022073 TGGGGATTCT
4022083 TGTTTGAGAAAGATAAATTGTGTATGTTCTCTACGTGAAATGCTGGTTAGAGAGACTAATGGAGG
1 TGTTTGAGAAAGATAAATTGTGTATGTTCTCTACGTGAAATGCTGGTTAGAGAGACTAATGGAGG
*
4022148 CGGTC
66 CAGTC
4022153 TGTTTGAGAAAGATAAATTGTGTATGTTCTCTACGTGAAATGCTGGTTAGAGAGACTAATGGAGG
1 TGTTTGAGAAAGATAAATTGTGTATGTTCTCTACGTGAAATGCTGGTTAGAGAGACTAATGGAGG
4022218 CAGTC
66 CAGTC
4022223 TGTTTGAGAAAGATAAA
1 TGTTTGAGAAAGATAAA
4022240 GCATTTTGGT
Statistics
Matches: 86, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
70 86 1.00
ACGTcount: A:0.31, C:0.09, G:0.29, T:0.31
Consensus pattern (70 bp):
TGTTTGAGAAAGATAAATTGTGTATGTTCTCTACGTGAAATGCTGGTTAGAGAGACTAATGGAGG
CAGTC
Found at i:4027021 original size:310 final size:311
Alignment explanation
Indices: 4026408--4027028 Score: 953
Period size: 310 Copynumber: 2.0 Consensus size: 311
4026398 TCTTCCCATG
* *
4026408 TGATGACAACCATGATCCAAGGTTGCCTAAATAATGATTTTGAAATGGATTTATAACAACAAACA
1 TGATGACAACCATGAACCAAGGTTGCCTAAATAATGATCTTGAAATGGATTTATAACAACAAACA
4026473 GAATTATTAATGCAAGAACAAAAATGGAAAGAAGCAGAAAAAATAACAAAACTAGAATAGAATAG
66 GAATTATTAATGCAAGAACAAAAATGGAAAGAAGCAGAAAAAATAACAAAACTAGAATAGAATAG
* *
4026538 AGATGAAGGATGGCACCACAATCGCAAGATTGATAAGCCAAAAAGAATGATCGCCACAAGAGTCT
131 AGATGAAAGATGGCACCACAATCACAAGATTGATAAGCCAAAAAGAATGATCGCCACAAGAGTCT
** * *
4026603 TGGCCTCTTGATAAGATTTAGAAAATAGGCTCACTTAAGAACCTAAGAATCACACTCTCACACAA
196 TGGCCTCTTGATAAGATCCAGAAAATAGGCTCACTCAAGAACCTAAGAATCACACCCTCACACAA
* * *
4026668 AATGTGTTTAATCTCCAAATACCATTGTTTGCCCCCATCCAAATCTGTTTA
261 AATGTGTTTAATCTCAAAATACCAATGTCTGCCCCCATCCAAATCTGTTTA
* * *
4026719 TGATGACAACCATGAACCAAGGTTGCCTAAATAATGATCTTGAGATGGATTTCTAACAATAAACA
1 TGATGACAACCATGAACCAAGGTTGCCTAAATAATGATCTTGAAATGGATTTATAACAACAAACA
* * * * * *
4026784 GAA-TATTGATGCAAGAACAGAATTTGAAAGAAGCAGAAAAAAATAACAAAA-TGGAATAGATTA
66 GAATTATTAATGCAAGAACAAAAATGGAAAGAAGCAG-AAAAAATAACAAAACTAGAATAGAATA
* *
4026847 GAGATGAAAGATGGCGCCACAATCACAAGATTGATAAGCCAAAAGGAATGATCGCCACAAGAGTC
130 GAGATGAAAGATGGCACCACAATCACAAGATTGATAAGCCAAAAAGAATGATCGCCACAAGAGTC
*
4026912 TTGGCCTCTTGATAAGATCCAGAAAAATTGGCTCACTCAAGAACCTAAGAATCACACCCTCACAC
195 TTGGCCTCTTGATAAGATCCAG-AAAATAGGCTCACTCAAGAACCTAAGAATCACACCCTCACAC
* **
4026977 AAAAATGTGTTTAATCTGAAAATATGAATGTCTG-CCCC-TCCAAATCTGTTTA
259 -AAAATGTGTTTAATCTCAAAATACCAATGTCTGCCCCCATCCAAATCTGTTTA
4027029 CAAGATCTTA
Statistics
Matches: 281, Mismatches: 26, Indels: 7
0.89 0.08 0.02
Matches are distributed among these distances:
310 134 0.48
311 120 0.43
312 27 0.10
ACGTcount: A:0.42, C:0.18, G:0.17, T:0.23
Consensus pattern (311 bp):
TGATGACAACCATGAACCAAGGTTGCCTAAATAATGATCTTGAAATGGATTTATAACAACAAACA
GAATTATTAATGCAAGAACAAAAATGGAAAGAAGCAGAAAAAATAACAAAACTAGAATAGAATAG
AGATGAAAGATGGCACCACAATCACAAGATTGATAAGCCAAAAAGAATGATCGCCACAAGAGTCT
TGGCCTCTTGATAAGATCCAGAAAATAGGCTCACTCAAGAACCTAAGAATCACACCCTCACACAA
AATGTGTTTAATCTCAAAATACCAATGTCTGCCCCCATCCAAATCTGTTTA
Found at i:4031750 original size:42 final size:42
Alignment explanation
Indices: 4031695--4031813 Score: 193
Period size: 42 Copynumber: 2.8 Consensus size: 42
4031685 TTCTTCTCTC
* *
4031695 CTCCTCCTGTCATCCCTCCTCTCTCTATTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
*
4031737 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
* *
4031779 CTCCTCCTATCATCCCTCCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
4031814 TTGAGGGCTA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 71 1.00
ACGTcount: A:0.08, C:0.46, G:0.03, T:0.43
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
Found at i:4031754 original size:12 final size:11
Alignment explanation
Indices: 4031728--4031803 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
4031718 TCTATTATCT
*
4031728 CTCCTGTCTCTC
1 CTCCTATCTC-C
4031740 CTCCTATCATCC
1 CTCCTATC-TCC
4031752 CTCCTATCT--
1 CTCCTATCTCC
*
4031761 CTACTATCT--
1 CTCCTATCTCC
*
4031770 CTCCTGTCTCTC
1 CTCCTATCTC-C
4031782 CTCCTATCATCC
1 CTCCTATC-TCC
*
4031794 CTCCTCTCTC
1 CTCCTATCTC
4031804 TTCTTTCTCT
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 3 0.06
12 31 0.58
13 4 0.08
ACGTcount: A:0.09, C:0.49, G:0.03, T:0.39
Consensus pattern (11 bp):
CTCCTATCTCC
Found at i:4031755 original size:24 final size:24
Alignment explanation
Indices: 4031719--4031804 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
4031709 CCTCCTCTCT
* *
4031719 CTATTATCTCTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
* *
4031743 CTATCATCCCTCC--TATCT-CTA
1 CTATCATCCCTCCTGTCTCTCCTC
4031764 CTATC-T--CTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
*
4031785 CTATCATCCCTCCTCTCTCT
1 CTATCATCCCTCCTGTCTCT
4031805 TCTTTCTCTT
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 4 0.08
20 5 0.10
21 14 0.29
22 5 0.10
24 21 0.43
ACGTcount: A:0.10, C:0.45, G:0.02, T:0.42
Consensus pattern (24 bp):
CTATCATCCCTCCTGTCTCTCCTC
Found at i:4031779 original size:18 final size:18
Alignment explanation
Indices: 4031710--4031780 Score: 52
Period size: 18 Copynumber: 3.6 Consensus size: 18
4031700 CCTGTCATCC
* *
4031710 CTCCTCTCTCTATTATCT
1 CTCCTGTCTCTACTATCT
*
4031728 CTCCTGTCTCTCCTCCTATCAT
1 CTCCTG--TCT-CTACTATC-T
*
4031750 CCCTCCTATCTCTACTATCT
1 --CTCCTGTCTCTACTATCT
4031770 CTCCTGTCTCT
1 CTCCTGTCTCT
4031781 CCTCCTATCA
Statistics
Matches: 41, Mismatches: 6, Indels: 12
0.69 0.10 0.20
Matches are distributed among these distances:
18 15 0.37
20 4 0.10
21 13 0.32
22 4 0.10
24 5 0.12
ACGTcount: A:0.10, C:0.44, G:0.03, T:0.44
Consensus pattern (18 bp):
CTCCTGTCTCTACTATCT
Found at i:4036684 original size:18 final size:18
Alignment explanation
Indices: 4036661--4036725 Score: 51
Period size: 21 Copynumber: 3.3 Consensus size: 18
4036651 ATCTTCTTCT
4036661 CTCCTCCTCCTATCATCC
1 CTCCTCCTCCTATCATCC
4036679 CTCCTCTCTCTACTATC-TCTC
1 CTCCTC-CTC--CTATCATC-C
*
4036700 CTATCTCTCCTCTTATCATCC
1 C--TC-CTCCTCCTATCATCC
4036721 CTCCT
1 CTCCT
4036726 ATCTCTTCGT
Statistics
Matches: 38, Mismatches: 1, Indels: 16
0.69 0.02 0.29
Matches are distributed among these distances:
18 8 0.21
19 5 0.13
20 2 0.05
21 13 0.34
22 2 0.05
23 5 0.13
24 3 0.08
ACGTcount: A:0.11, C:0.49, G:0.00, T:0.40
Consensus pattern (18 bp):
CTCCTCCTCCTATCATCC
Found at i:4039730 original size:63 final size:63
Alignment explanation
Indices: 4039648--4039832 Score: 196
Period size: 64 Copynumber: 2.9 Consensus size: 63
4039638 AAATTGGATT
*
4039648 TTAACAAAG-AAAATGAAAAAGTGTCAACTTTATTGGTCTCCTATCTAACCAAATAAAACGAAC
1 TTAACAGAGAAAAAT-AAAAAGTGTCAACTTTATTGGTCTCCTATCTAACCAAATAAAACGAAC
* * * * * *
4039711 TTAACAGAGAAAAATAAAAAGATG-CAAGATTTACTAGTCTCCTATCTAAGCAAATAAAATGGAC
1 TTAACAGAGAAAAATAAAAAG-TGTCAA-CTTTATTGGTCTCCTATCTAACCAAATAAAACGAAC
* * * * *
4039775 TCAACAGAGAAAACTAAAAAGGGTCCAACTTTATTAGG-CTCTTGTCTAACCAAATAAA
1 TTAACAGAGAAAAATAAAAAGTGT-CAACTTTATT-GGTCTCCTATCTAACCAAATAAA
4039833 GTGGAGGGTT
Statistics
Matches: 100, Mismatches: 16, Indels: 11
0.79 0.13 0.09
Matches are distributed among these distances:
63 18 0.18
64 78 0.78
65 4 0.04
ACGTcount: A:0.46, C:0.17, G:0.13, T:0.24
Consensus pattern (63 bp):
TTAACAGAGAAAAATAAAAAGTGTCAACTTTATTGGTCTCCTATCTAACCAAATAAAACGAAC
Found at i:4041512 original size:27 final size:27
Alignment explanation
Indices: 4041477--4041533 Score: 105
Period size: 27 Copynumber: 2.1 Consensus size: 27
4041467 GAATTTGCCA
4041477 TTGCACAAACTCAATAACCTTTAGCAT
1 TTGCACAAACTCAATAACCTTTAGCAT
*
4041504 TTGCACAAACTCAATAACCTTTAGCGT
1 TTGCACAAACTCAATAACCTTTAGCAT
4041531 TTG
1 TTG
4041534 TCACTACACC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.33, C:0.25, G:0.11, T:0.32
Consensus pattern (27 bp):
TTGCACAAACTCAATAACCTTTAGCAT
Found at i:4046100 original size:13 final size:13
Alignment explanation
Indices: 4046082--4046106 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
4046072 CATAAAGTGT
4046082 TGTATCGATACAA
1 TGTATCGATACAA
4046095 TGTATCGATACA
1 TGTATCGATACA
4046107 TATTTTTTTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:4046188 original size:13 final size:13
Alignment explanation
Indices: 4046170--4046194 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
4046160 ATCACTTAAA
4046170 TGTATCGATACAT
1 TGTATCGATACAT
4046183 TGTATCGATACA
1 TGTATCGATACA
4046195 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:4046259 original size:52 final size:52
Alignment explanation
Indices: 4046203--4046331 Score: 224
Period size: 52 Copynumber: 2.5 Consensus size: 52
4046193 CACTGATCTT
4046203 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACA-TCATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACT-ATAAAA
**
4046255 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTCAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
4046307 TGTATCGATACATGCAGGCAAATTT
1 TGTATCGATACATGCAGGCAAATTT
4046332 TCATATTTCG
Statistics
Matches: 74, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
52 73 0.99
53 1 0.01
ACGTcount: A:0.34, C:0.19, G:0.18, T:0.29
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
Found at i:4050473 original size:10 final size:10
Alignment explanation
Indices: 4050458--4050484 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
4050448 TGCTAACTAA
4050458 GTTTTTGTTT
1 GTTTTTGTTT
4050468 GTTTTTGTTT
1 GTTTTTGTTT
4050478 GTTTTTG
1 GTTTTTG
4050485 CTTGATACAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.00, C:0.00, G:0.22, T:0.78
Consensus pattern (10 bp):
GTTTTTGTTT
Found at i:4060148 original size:1 final size:1
Alignment explanation
Indices: 4060128--4060225 Score: 70
Period size: 1 Copynumber: 98.0 Consensus size: 1
4060118 GGCGTCCTCC
* * * * * * * **
4060128 AAAAAACAAACAAAACAAAAAAAAAACAAAAAAACAAAAAAAAAACACAAAAAAAAAACCAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * * * *
4060193 CAAAAACAAAAAAAACAAACAAAAACAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
4060226 GGGGGTCCGG
Statistics
Matches: 71, Mismatches: 26, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
1 71 1.00
ACGTcount: A:0.86, C:0.14, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:4060152 original size:19 final size:19
Alignment explanation
Indices: 4060128--4060225 Score: 107
Period size: 18 Copynumber: 5.2 Consensus size: 19
4060118 GGCGTCCTCC
4060128 AAAAAACAAACAAAACAAAA
1 AAAAAACAAACAAAAC-AAA
4060148 AAAAAACAAA-AAAACAAA
1 AAAAAACAAACAAAACAAA
*
4060166 AAAAAA-ACACAAAA-AAA
1 AAAAAACAAACAAAACAAA
*
4060183 AAACCAA-AAACAAAA-ACAA
1 AAA-AAACAAACAAAACA-AA
4060202 AAAAAACAAACAAAAACAAA
1 AAAAAACAAAC-AAAACAAA
4060222 AAAA
1 AAAA
4060226 GGGGGTCCGG
Statistics
Matches: 68, Mismatches: 4, Indels: 12
0.81 0.05 0.14
Matches are distributed among these distances:
17 8 0.12
18 25 0.37
19 14 0.21
20 20 0.29
21 1 0.01
ACGTcount: A:0.86, C:0.14, G:0.00, T:0.00
Consensus pattern (19 bp):
AAAAAACAAACAAAACAAA
Found at i:4060153 original size:20 final size:20
Alignment explanation
Indices: 4060128--4060225 Score: 118
Period size: 19 Copynumber: 5.2 Consensus size: 20
4060118 GGCGTCCTCC
4060128 AAAAAACAAACAAAACAAAA
1 AAAAAACAAACAAAACAAAA
4060148 AAAAAACAAA-AAAACAAAA
1 AAAAAACAAACAAAACAAAA
4060167 AAAAAAC--ACAAAA-AAAA
1 AAAAAACAAACAAAACAAAA
** *
4060184 AACCAA-AAACAAAA-ACAA
1 AAAAAACAAACAAAACAAAA
4060202 AAAAAACAAACAAAAACAAAA
1 AAAAAACAAAC-AAAACAAAA
4060223 AAA
1 AAA
4060226 GGGGGTCCGG
Statistics
Matches: 66, Mismatches: 6, Indels: 11
0.80 0.07 0.13
Matches are distributed among these distances:
17 9 0.14
18 17 0.26
19 20 0.30
20 14 0.21
21 6 0.09
ACGTcount: A:0.86, C:0.14, G:0.00, T:0.00
Consensus pattern (20 bp):
AAAAAACAAACAAAACAAAA
Found at i:4060166 original size:13 final size:12
Alignment explanation
Indices: 4060128--4060224 Score: 115
Period size: 12 Copynumber: 7.8 Consensus size: 12
4060118 GGCGTCCTCC
*
4060128 AAAAAACAAACA
1 AAAAAAAAAACA
4060140 AAACAAAAAAA-A
1 AAA-AAAAAAACA
*
4060152 AACAAAAAAACA
1 AAAAAAAAAACA
4060164 AAAAAAAAACACA
1 AAAAAAAAA-ACA
*
4060177 AAAAAAAAACCA
1 AAAAAAAAAACA
*
4060189 AAAACAAAAACA
1 AAAAAAAAAACA
4060201 AAAAAAACAAACA
1 AAAAAAA-AAACA
4060214 AAAACAAAAAA
1 AAAA-AAAAAA
4060225 AGGGGGTCCG
Statistics
Matches: 73, Mismatches: 7, Indels: 9
0.82 0.08 0.10
Matches are distributed among these distances:
11 7 0.10
12 33 0.45
13 30 0.41
14 3 0.04
ACGTcount: A:0.86, C:0.14, G:0.00, T:0.00
Consensus pattern (12 bp):
AAAAAAAAAACA
Found at i:4060183 original size:32 final size:31
Alignment explanation
Indices: 4060128--4060225 Score: 128
Period size: 32 Copynumber: 3.1 Consensus size: 31
4060118 GGCGTCCTCC
*
4060128 AAAAAACAAACAAAACAAAAAAAAAACAAAA
1 AAAAAACAAAAAAAACAAAAAAAAAACAAAA
4060159 AAACAAA-AAAAAAACACAAAAAAAAAACCAAAA
1 AAA-AAACAAAAAAA-ACAAAAAAAAAA-CAAAA
*
4060192 ACAAAAACAAAAAAAAC-AAACAAAAACAAAA
1 A-AAAAACAAAAAAAACAAAAAAAAAACAAAA
4060223 AAA
1 AAA
4060226 GGGGGTCCGG
Statistics
Matches: 60, Mismatches: 2, Indels: 11
0.82 0.03 0.15
Matches are distributed among these distances:
30 2 0.03
31 15 0.25
32 23 0.38
33 11 0.18
34 9 0.15
ACGTcount: A:0.86, C:0.14, G:0.00, T:0.00
Consensus pattern (31 bp):
AAAAAACAAAAAAAACAAAAAAAAAACAAAA
Found at i:4060224 original size:39 final size:37
Alignment explanation
Indices: 4060127--4060225 Score: 125
Period size: 39 Copynumber: 2.7 Consensus size: 37
4060117 CGGCGTCCTC
4060127 CAAAAAACAAAC-AAAAC-AAAAAAAAAACAAAAAAA
1 CAAAAAACAAACAAAAACAAAAAAAAAAACAAAAAAA
*
4060162 CAAAAAAAAAACACAAAA-AAAAAACCAAAAACAAAAACAA
1 CAAAAAACAAACA-AAAACAAAAAA--AAAAACAAAAA-AA
4060202 -AAAAAACAAACAAAAACAAAAAAA
1 CAAAAAACAAACAAAAACAAAAAAA
4060226 GGGGGTCCGG
Statistics
Matches: 55, Mismatches: 2, Indels: 12
0.80 0.03 0.17
Matches are distributed among these distances:
35 11 0.20
37 10 0.18
38 4 0.07
39 28 0.51
40 2 0.04
ACGTcount: A:0.85, C:0.15, G:0.00, T:0.00
Consensus pattern (37 bp):
CAAAAAACAAACAAAAACAAAAAAAAAAACAAAAAAA
Found at i:4061705 original size:29 final size:29
Alignment explanation
Indices: 4061666--4061950 Score: 236
Period size: 30 Copynumber: 9.6 Consensus size: 29
4061656 TCACCCTTCA
* *
4061666 AAAGTCCACAAGTCAGTGGCATATTTTTC
1 AAAGCCCACAAGTCAGTGGCATCTTTTTC
*
4061695 AAAGCCCACAAGTCAGTGGCATTTTTTTC
1 AAAGCCCACAAGTCAGTGGCATCTTTTTC
* * *
4061724 AAAAGCCCACAAGTTAGTGGCAAC--CTTC
1 -AAAGCCCACAAGTCAGTGGCATCTTTTTC
* *
4061752 AAAGCCCACAAATCAGTGGCACCCTTTTTC
1 AAAGCCCACAAGTCAGTGGCA-TCTTTTTC
* * *
4061782 GAAGCCCACAAGTCGGTGGCATCTTTTCC
1 AAAGCCCACAAGTCAGTGGCATCTTTTTC
* * *
4061811 AAAGCTCACAACTCTA-TAGCACTCTTTTTC
1 AAAGCCCACAAGTC-AGTGGCA-TCTTTTTC
* * * *
4061841 TTTTTAAGCCCACAAGTTAGTGGCACCCTTTTC
1 ----AAAGCCCACAAGTCAGTGGCATCTTTTTC
* * *
4061874 AAAAGCCCACAAGTTAGTGGCACCCTTTTC
1 -AAAGCCCACAAGTCAGTGGCATCTTTTTC
* * *
4061904 AAAAGCCCACAAGTCAGTGGCAAC-CTTTA
1 -AAAGCCCACAAGTCAGTGGCATCTTTTTC
4061933 AAAGCCCACAAGTCAGTG
1 AAAGCCCACAAGTCAGTG
4061951 ATGCAAACCT
Statistics
Matches: 211, Mismatches: 34, Indels: 23
0.79 0.13 0.09
Matches are distributed among these distances:
27 19 0.09
28 22 0.10
29 51 0.24
30 98 0.46
33 7 0.03
34 14 0.07
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (29 bp):
AAAGCCCACAAGTCAGTGGCATCTTTTTC
Found at i:4061966 original size:60 final size:60
Alignment explanation
Indices: 4061663--4061974 Score: 216
Period size: 59 Copynumber: 5.2 Consensus size: 60
4061653 TTATCACCCT
* * *** *
4061663 TCAAAAGTCCACAAGTCAGTGGCATA-TTTTTC-AAAGCCCACAAGTCAGTGGCATTTTTT
1 TCAAAAGCCCACAAGTCAGTGGCA-ACCTTTTCAAAAGCCCACAAGTCAGTGGCAACCTTC
* * * *
4061722 TCAAAAGCCCACAAGTTAGTGGCAACC--TTC-AAAGCCCACAAATCAGTGGCACCCTTTT
1 TCAAAAGCCCACAAGTCAGTGGCAACCTTTTCAAAAGCCCACAAGTCAGTGGCAACC-TTC
* * * * * * *
4061780 TC-GAAGCCCACAAGTCGGTGGC-ATCTTTTCCAAAGCTCACAACTCTA-TAGC-ACTCTTTTTC
1 TCAAAAGCCCACAAGTCAGTGGCAACCTTTTCAAAAGCCCACAAGTC-AGTGGCAAC-C---TTC
*** * * * * *
4061841 TTTTTAAGCCCACAAGTTAGTGGCACCCTTTTCAAAAGCCCACAAGTTAGTGGCACCCTTT
1 -TCAAAAGCCCACAAGTCAGTGGCAACCTTTTCAAAAGCCCACAAGTCAGTGGCAACCTTC
4061902 TCAAAAGCCCACAAGTCAGTGGCAACC-TTT-AAAAGCCCACAAGTCAGTGATGCAAACC-TC
1 TCAAAAGCCCACAAGTCAGTGGCAACCTTTTCAAAAGCCCACAAGTCAGTG--GC-AACCTTC
4061962 TCAAAAGCCCACA
1 TCAAAAGCCCACA
4061975 CAAGTTGGTG
Statistics
Matches: 199, Mismatches: 37, Indels: 33
0.74 0.14 0.12
Matches are distributed among these distances:
56 2 0.01
57 40 0.20
58 28 0.14
59 41 0.21
60 39 0.20
61 8 0.04
62 1 0.01
63 18 0.09
64 21 0.11
65 1 0.01
ACGTcount: A:0.31, C:0.29, G:0.16, T:0.25
Consensus pattern (60 bp):
TCAAAAGCCCACAAGTCAGTGGCAACCTTTTCAAAAGCCCACAAGTCAGTGGCAACCTTC
Found at i:4062123 original size:49 final size:48
Alignment explanation
Indices: 4061994--4062217 Score: 175
Period size: 48 Copynumber: 4.8 Consensus size: 48
4061984 GGCGTCTCCT
* * *
4061994 TTTAAGCCCAATATAGTTGGCCTTGAATCAGCATATTGGCACCTTGCC
1 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTGCA
** * *
4062042 TTTATTTCCAATATCGCTGGCCTTAAATCAGCATATTGGCACCTT-CATA
1 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTGC--A
* * *
4062091 TTTAAGTCCAATGTAGCTGACCTTGAATCAGCACATTGGCA-C---C-
1 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTGCA
* *
4062134 -TTAAGTCC-A-ATA--TGGCCTTGAATTAGCAT-TTGGCACCTTTTCCA
1 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACC--TTGCA
* * *
4062178 TCTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTG
1 --TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTG
4062218 ACATCCTTTT
Statistics
Matches: 137, Mismatches: 22, Indels: 30
0.72 0.12 0.16
Matches are distributed among these distances:
37 6 0.04
38 15 0.11
40 2 0.01
41 1 0.01
42 8 0.06
43 1 0.01
46 1 0.01
47 8 0.06
48 41 0.30
49 36 0.26
51 15 0.11
52 3 0.02
ACGTcount: A:0.26, C:0.24, G:0.17, T:0.33
Consensus pattern (48 bp):
TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTGCA
Found at i:4063130 original size:13 final size:13
Alignment explanation
Indices: 4063112--4063136 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
4063102 CATAAAGTGT
4063112 TGTATCGATACAA
1 TGTATCGATACAA
4063125 TGTATCGATACA
1 TGTATCGATACA
4063137 TATTTTTTTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:4063218 original size:13 final size:13
Alignment explanation
Indices: 4063200--4063224 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
4063190 ATCACTTAAA
4063200 TGTATCGATACAT
1 TGTATCGATACAT
4063213 TGTATCGATACA
1 TGTATCGATACA
4063225 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:4063289 original size:52 final size:52
Alignment explanation
Indices: 4063233--4063361 Score: 224
Period size: 52 Copynumber: 2.5 Consensus size: 52
4063223 CACTGATCTT
4063233 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACA-TCATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACT-ATAAAA
**
4063285 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTCAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
4063337 TGTATCGATACATGCAGGCAAATTT
1 TGTATCGATACATGCAGGCAAATTT
4063362 TCATATTTCG
Statistics
Matches: 74, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
52 73 0.99
53 1 0.01
ACGTcount: A:0.34, C:0.19, G:0.18, T:0.29
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
Found at i:4071995 original size:42 final size:42
Alignment explanation
Indices: 4071940--4072058 Score: 168
Period size: 42 Copynumber: 2.8 Consensus size: 42
4071930 TTCTTCTCTC
* *
4071940 CTCCTCCTGTCATCCCTCCTCTCTCTATTATCTCTC-CTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCTC-GTCT
*
4071982 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCTCGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCTCGTCT
* * *
4072024 CTTCTCCTATCATCCCTCCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
4072059 TTGAGGGCTA
Statistics
Matches: 69, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
42 68 0.99
43 1 0.01
ACGTcount: A:0.08, C:0.45, G:0.03, T:0.44
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCTCGTCT
Found at i:4072000 original size:24 final size:22
Alignment explanation
Indices: 4071943--4072049 Score: 77
Period size: 21 Copynumber: 5.1 Consensus size: 22
4071933 TTCTCTCCTC
*
4071943 CTCCTGTCATCCCT-C--CTCT
1 CTCCTATCATCCCTCCGTCTCT
* *
4071962 CT-CTATTATCTCTCCTGTCTCT
1 CTCCTATCATCCCTCC-GTCTCT
*
4071984 CCTCCTATCATCCCTCC-TATCT
1 -CTCCTATCATCCCTCCGTCTCT
* *
4072006 CTACTATC-TCTCT-CGTCTCTT
1 CTCCTATCATCCCTCCGTCTC-T
4072027 CTCCTATCATCCCTCC-TCTCT
1 CTCCTATCATCCCTCCGTCTCT
4072048 CT
1 CT
4072050 TCTTTCTCTT
Statistics
Matches: 67, Mismatches: 11, Indels: 18
0.70 0.11 0.19
Matches are distributed among these distances:
18 8 0.12
19 4 0.06
20 7 0.10
21 18 0.27
22 16 0.24
23 3 0.04
24 11 0.16
ACGTcount: A:0.09, C:0.46, G:0.03, T:0.42
Consensus pattern (22 bp):
CTCCTATCATCCCTCCGTCTCT
Found at i:4072050 original size:24 final size:23
Alignment explanation
Indices: 4071934--4072052 Score: 71
Period size: 21 Copynumber: 5.5 Consensus size: 23
4071924 TCCATCTTCT
* *
4071934 TCTCTC-CTCCTCCTGTCATCCC
1 TCTCTCTCTTCTCCTATCATCCC
**
4071956 TC-CTCTC-TCTATTATC-TCTCC
1 TCTCTCTCTTCTCCTATCATC-CC
*
4071977 TGTCTCTC--CTCCTATCATCCC
1 TCTCTCTCTTCTCCTATCATCCC
* *
4071998 TC-CTATC-TCTACTATC-T--C
1 TCTCTCTCTTCTCCTATCATCCC
4072016 TCTCGTCTCTTCTCCTATCATCCC
1 TCTC-TCTCTTCTCCTATCATCCC
4072040 TCCTCTCTCTTCT
1 T-CTCTCTCTTCT
4072053 TTCTCTTTGA
Statistics
Matches: 73, Mismatches: 12, Indels: 22
0.68 0.11 0.21
Matches are distributed among these distances:
18 3 0.04
19 1 0.01
20 10 0.14
21 35 0.48
22 11 0.15
24 10 0.14
25 3 0.04
ACGTcount: A:0.08, C:0.46, G:0.03, T:0.43
Consensus pattern (23 bp):
TCTCTCTCTTCTCCTATCATCCC
Found at i:4088930 original size:28 final size:28
Alignment explanation
Indices: 4088899--4088952 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 28
4088889 CTTTGAAATA
* *
4088899 GGTGCCACAGATTTGTGGGCCTAAAAAG
1 GGTGCCACAGATGTGTGAGCCTAAAAAG
* *
4088927 GGTGCCACTGATGTGTGAGCTTAAAA
1 GGTGCCACAGATGTGTGAGCCTAAAA
4088953 GAAGATGCCA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 22 1.00
ACGTcount: A:0.28, C:0.17, G:0.31, T:0.24
Consensus pattern (28 bp):
GGTGCCACAGATGTGTGAGCCTAAAAAG
Found at i:4089197 original size:29 final size:29
Alignment explanation
Indices: 4089118--4089225 Score: 100
Period size: 29 Copynumber: 3.8 Consensus size: 29
4089108 ACCAACTAGT
4089118 GTGGGCTTT--AAAGAGGT-CCTACTGACTCA
1 GTGGGCTTTGAAAAG-GGTGCC-ACTGACT-A
**
4089147 -TGGGCTTT-AAAAGGGTAACACTGACTA
1 GTGGGCTTTGAAAAGGGTGCCACTGACTA
* * *
4089174 GTGGGTTTTGAAAAGGGTGCCACTAACTT
1 GTGGGCTTTGAAAAGGGTGCCACTGACTA
*
4089203 GTGGGCTTTGAAAAGGTTGCCAC
1 GTGGGCTTTGAAAAGGGTGCCAC
4089226 CAACTTGTGT
Statistics
Matches: 67, Mismatches: 8, Indels: 8
0.81 0.10 0.10
Matches are distributed among these distances:
27 1 0.01
28 25 0.37
29 41 0.61
ACGTcount: A:0.26, C:0.17, G:0.30, T:0.28
Consensus pattern (29 bp):
GTGGGCTTTGAAAAGGGTGCCACTGACTA
Found at i:4089243 original size:31 final size:31
Alignment explanation
Indices: 4089180--4089660 Score: 436
Period size: 31 Copynumber: 15.4 Consensus size: 31
4089170 ACTAGTGGGT
* * *
4089180 TTTGAAAAGGGTGCCACTAACT--TGTGGGC
1 TTTGAAAAGGTTGCCACCAACTCGTGTGGAC
*
4089209 TTTGAAAAGGTTGCCACCAACTTGTGTGGAC
1 TTTGAAAAGGTTGCCACCAACTCGTGTGGAC
* *
4089240 TTTGAAAAAGTTGTCACCAACTCGTGTGGAC
1 TTTGAAAAGGTTGCCACCAACTCGTGTGGAC
** * * *
4089271 TTT-AACTGTGGTGCCACCAACTCATCTGGAC
1 TTTGAAAAG-GTTGCCACCAACTCGTGTGGAC
* * *
4089302 TTTAAAAAAGTTTGGTTGCCACCGACTTGTGTGGAC
1 TTT-GAAAA----GGTTGCCACCAACTCGTGTGGAC
** *
4089338 TTTGAATGGGGTGCCACCAACTCGTGTGGAC
1 TTTGAAAAGGTTGCCACCAACTCGTGTGGAC
*
4089369 TTTGAAAAGGTTGCCACCAACTCATGTGGAC
1 TTTGAAAAGGTTGCCACCAACTCGTGTGGAC
** *
4089400 TTTG-ACGGGGTGCCACCAACTCGTGTGGAC
1 TTTGAAAAGGTTGCCACCAACTCGTGTGGAC
** * * *
4089430 TTTGACTAGGGTGCCACCTACTCATGTGGAC
1 TTTGAAAAGGTTGCCACCAACTCGTGTGGAC
4089461 TTTGAAAAGGTTGCCACCAACTCGTGTGGAC
1 TTTGAAAAGGTTGCCACCAACTCGTGTGGAC
** * * *
4089492 TTTGACTAGGGTGCCACCGACTCATGTGGAC
1 TTTGAAAAGGTTGCCACCAACTCGTGTGGAC
* *
4089523 TTTGAAAAGGTTACCACCGACTCGTGTGGAC
1 TTTGAAAAGGTTGCCACCAACTCGTGTGGAC
4089554 TTTGAAAAGGTTGCCACCAACTTC-TGTGGAC
1 TTTGAAAAGGTTGCCACCAAC-TCGTGTGGAC
* * * *
4089585 TTTG--ACGGGTGCCACTAACTCATGTGGAC
1 TTTGAAAAGGTTGCCACCAACTCGTGTGGAC
* * ** *
4089614 ATTGAAAACGATTGTGCCACTGACTTGTGTGGAC
1 TTTGAAAA-G-GT-TGCCACCAACTCGTGTGGAC
4089648 TTTGGAAAAGGTT
1 TTT-GAAAAGGTT
4089661 TGGTTGCTAC
Statistics
Matches: 366, Mismatches: 68, Indels: 33
0.78 0.15 0.07
Matches are distributed among these distances:
28 2 0.01
29 42 0.11
30 28 0.08
31 239 0.65
32 4 0.01
33 3 0.01
34 20 0.05
35 7 0.02
36 20 0.05
37 1 0.00
ACGTcount: A:0.24, C:0.22, G:0.26, T:0.28
Consensus pattern (31 bp):
TTTGAAAAGGTTGCCACCAACTCGTGTGGAC
Found at i:4089645 original size:34 final size:36
Alignment explanation
Indices: 4089592--4089721 Score: 95
Period size: 37 Copynumber: 3.6 Consensus size: 36
4089582 GACTTTGACG
* **
4089592 GGTGCCACTAACTCATGTGGACATT-GAAAACGATT
1 GGTGCCACTGACTTGTGTGGACATTGGAAAACGATT
* * *
4089627 -GTGCCACTGACTTGTGTGGACTTTGGAAAAGGTTT
1 GGTGCCACTGACTTGTGTGGACATTGGAAAACGATT
* * ** * *
4089662 GGTTGCTACTGACTTGTGTGAAC-TTTAAAAAAGTTTT
1 GG-TGCCACTGACTTGTGTGGACATTGGAAAACG-ATT
*
4089699 GGTTGCCACCGACTTGTGTGGAC
1 GG-TGCCACTGACTTGTGTGGAC
4089722 TTTAAAAATG
Statistics
Matches: 77, Mismatches: 14, Indels: 6
0.79 0.14 0.06
Matches are distributed among these distances:
34 20 0.26
35 8 0.10
36 8 0.10
37 41 0.53
ACGTcount: A:0.24, C:0.17, G:0.27, T:0.32
Consensus pattern (36 bp):
GGTGCCACTGACTTGTGTGGACATTGGAAAACGATT
Found at i:4089750 original size:74 final size:74
Alignment explanation
Indices: 4089628--4089766 Score: 185
Period size: 74 Copynumber: 1.9 Consensus size: 74
4089618 AAAACGATTG
* * *
4089628 TGCCACTGACTTGTGTGGACTTTGGAAAAGGTTTGGTTGCTACTGACTTGTGTGAACTTTAAAAA
1 TGCCACCGACTTGTGTGGACTTTGAAAAAGATTTGGTTGCTACTGACTTGTGTGAACTTTAAAAA
4089693 AGTTTTGGT
66 AGTTTTGGT
* *
4089702 TGCCACCGACTTGTGTGGACTTT-AAAAATGATTTGGTTG-T-CATCGACTTGTGTGGATTTTAA
1 TGCCACCGACTTGTGTGGACTTTGAAAAA-GATTTGGTTGCTAC-T-GACTTGTGTGAACTTTAA
4089764 AAA
63 AAA
4089767 TGATTTAGTT
Statistics
Matches: 57, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
72 1 0.02
73 6 0.11
74 50 0.88
ACGTcount: A:0.24, C:0.13, G:0.25, T:0.37
Consensus pattern (74 bp):
TGCCACCGACTTGTGTGGACTTTGAAAAAGATTTGGTTGCTACTGACTTGTGTGAACTTTAAAAA
AGTTTTGGT
Found at i:4089787 original size:37 final size:37
Alignment explanation
Indices: 4089635--4089772 Score: 156
Period size: 37 Copynumber: 3.7 Consensus size: 37
4089625 TTGTGCCACT
* *
4089635 GACTTGTGTGGACTTTGGAAAA-GGTTTGGTTG-C-TAC
1 GACTTGTGTGGACTTT-AAAAATGATTTGGTTGTCAT-C
* * * * *
4089671 TGACTTGTGTGAACTTTAAAAAAGTTTTGGTTGCCACC
1 -GACTTGTGTGGACTTTAAAAATGATTTGGTTGTCATC
4089709 GACTTGTGTGGACTTTAAAAATGATTTGGTTGTCATC
1 GACTTGTGTGGACTTTAAAAATGATTTGGTTGTCATC
*
4089746 GACTTGTGTGGATTTTAAAAATGATTT
1 GACTTGTGTGGACTTTAAAAATGATTT
4089773 AGTTTGTGTG
Statistics
Matches: 88, Mismatches: 10, Indels: 6
0.85 0.10 0.06
Matches are distributed among these distances:
36 4 0.05
37 82 0.93
38 2 0.02
ACGTcount: A:0.25, C:0.11, G:0.25, T:0.39
Consensus pattern (37 bp):
GACTTGTGTGGACTTTAAAAATGATTTGGTTGTCATC
Found at i:4091001 original size:32 final size:33
Alignment explanation
Indices: 4090939--4091007 Score: 88
Period size: 32 Copynumber: 2.1 Consensus size: 33
4090929 GGCTTGCTTG
*
4090939 ACAAGAAAGGTCATACAGTTTGATTTATTTT-A
1 ACAAGAAAGGTCATACAGTTTGATTCATTTTCA
* *
4090971 ACAAGAAAGGTGATAC-GATTTGGTTCATTTTCA
1 ACAAGAAAGGTCATACAG-TTTGATTCATTTTCA
4091004 ACAA
1 ACAA
4091008 AATGGTCTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
31 1 0.03
32 26 0.81
33 5 0.16
ACGTcount: A:0.38, C:0.12, G:0.17, T:0.33
Consensus pattern (33 bp):
ACAAGAAAGGTCATACAGTTTGATTCATTTTCA
Found at i:4091220 original size:47 final size:47
Alignment explanation
Indices: 4091167--4091294 Score: 202
Period size: 47 Copynumber: 2.7 Consensus size: 47
4091157 CGTGTCATTT
* ** *
4091167 TGTAGTTGCCTTGAGAGGTGTTTGACTAGATTTGGGGTTCATGGTTC
1 TGTAGTTGCCTTGAGAGGTGTTTGACTTGATTTACGATTCATGGTTC
*
4091214 TGTAGTTGCCTTGAGAGGTGTTTGACTTGATTTACGATTCATGGTTT
1 TGTAGTTGCCTTGAGAGGTGTTTGACTTGATTTACGATTCATGGTTC
*
4091261 TGTAGTTGCCTTAAGAGGTGTTTGACTTGATTTA
1 TGTAGTTGCCTTGAGAGGTGTTTGACTTGATTTA
4091295 GTTTTTTTTC
Statistics
Matches: 75, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 75 1.00
ACGTcount: A:0.17, C:0.10, G:0.30, T:0.43
Consensus pattern (47 bp):
TGTAGTTGCCTTGAGAGGTGTTTGACTTGATTTACGATTCATGGTTC
Found at i:4092423 original size:15 final size:15
Alignment explanation
Indices: 4092385--4092423 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
4092375 TAAAGAATAC
4092385 AAAAAAAAAAGAAAG
1 AAAAAAAAAAGAAAG
* * *
4092400 AATACAAAAAGAGAG
1 AAAAAAAAAAGAAAG
4092415 AAAAAAAAA
1 AAAAAAAAA
4092424 GCCAGCATTT
Statistics
Matches: 19, Mismatches: 5, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.82, C:0.03, G:0.13, T:0.03
Consensus pattern (15 bp):
AAAAAAAAAAGAAAG
Found at i:4093222 original size:42 final size:42
Alignment explanation
Indices: 4093161--4093279 Score: 175
Period size: 42 Copynumber: 2.8 Consensus size: 42
4093151 TAGCCCTCAA
* *
4093161 AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
* *
4093203 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGACATG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
* * *
4093245 AGAGATAATAGAGAGAGGAGGGATGACAGAAGGAG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAG
4093280 GAGAGAAGAA
Statistics
Matches: 69, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 69 1.00
ACGTcount: A:0.44, C:0.03, G:0.45, T:0.09
Consensus pattern (42 bp):
AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
Found at i:4096548 original size:21 final size:21
Alignment explanation
Indices: 4096524--4096565 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
4096514 TTCTCTCATT
*
4096524 TTCTCTCACTCTTCC-ATCTTC
1 TTCTCTC-CTCCTCCTATCTTC
4096545 TTCTCTCCTCCTCCTATCTTC
1 TTCTCTCCTCCTCCTATCTTC
4096566 CCTCCTCTCT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 6 0.32
21 13 0.68
ACGTcount: A:0.07, C:0.45, G:0.00, T:0.48
Consensus pattern (21 bp):
TTCTCTCCTCCTCCTATCTTC
Found at i:4096564 original size:18 final size:18
Alignment explanation
Indices: 4096543--4096595 Score: 56
Period size: 18 Copynumber: 2.9 Consensus size: 18
4096533 TCTTCCATCT
4096543 TCTTCTCTCCTC-CTCCTA
1 TCTTCTCTCCTCTCT-CTA
*
4096561 TCTTCCCTCCTCTCTCTA
1 TCTTCTCTCCTCTCTCTA
*
4096579 T-TATCTCTCCTGTCTCT
1 TCT-TCTCTCCTCTCTCT
4096596 CCTCCTATCA
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
17 1 0.03
18 27 0.90
19 2 0.07
ACGTcount: A:0.06, C:0.45, G:0.02, T:0.47
Consensus pattern (18 bp):
TCTTCTCTCCTCTCTCTA
Found at i:4096604 original size:42 final size:42
Alignment explanation
Indices: 4096552--4096670 Score: 193
Period size: 42 Copynumber: 2.8 Consensus size: 42
4096542 TTCTTCTCTC
* *
4096552 CTCCTCCTATCTTCCCTCCTCTCTCTATTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
*
4096594 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
* *
4096636 CTCCTCCTATCATCCCTCCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
4096671 TTGAGGGCTA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 71 1.00
ACGTcount: A:0.08, C:0.46, G:0.02, T:0.44
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
Found at i:4096611 original size:12 final size:11
Alignment explanation
Indices: 4096585--4096660 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
4096575 TCTATTATCT
*
4096585 CTCCTGTCTCTC
1 CTCCTATCTC-C
4096597 CTCCTATCATCC
1 CTCCTATC-TCC
4096609 CTCCTATCT--
1 CTCCTATCTCC
*
4096618 CTACTATCT--
1 CTCCTATCTCC
*
4096627 CTCCTGTCTCTC
1 CTCCTATCTC-C
4096639 CTCCTATCATCC
1 CTCCTATC-TCC
*
4096651 CTCCTCTCTC
1 CTCCTATCTC
4096661 TTCTTTCTCT
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 3 0.06
12 31 0.58
13 4 0.08
ACGTcount: A:0.09, C:0.49, G:0.03, T:0.39
Consensus pattern (11 bp):
CTCCTATCTCC
Found at i:4096612 original size:24 final size:24
Alignment explanation
Indices: 4096576--4096661 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
4096566 CCTCCTCTCT
* *
4096576 CTATTATCTCTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
* *
4096600 CTATCATCCCTCC--TATCT-CTA
1 CTATCATCCCTCCTGTCTCTCCTC
4096621 CTATC-T--CTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
*
4096642 CTATCATCCCTCCTCTCTCT
1 CTATCATCCCTCCTGTCTCT
4096662 TCTTTCTCTT
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 4 0.08
20 5 0.10
21 14 0.29
22 5 0.10
24 21 0.43
ACGTcount: A:0.10, C:0.45, G:0.02, T:0.42
Consensus pattern (24 bp):
CTATCATCCCTCCTGTCTCTCCTC
Found at i:4096636 original size:18 final size:18
Alignment explanation
Indices: 4096567--4096637 Score: 52
Period size: 18 Copynumber: 3.6 Consensus size: 18
4096557 CCTATCTTCC
* *
4096567 CTCCTCTCTCTATTATCT
1 CTCCTGTCTCTACTATCT
*
4096585 CTCCTGTCTCTCCTCCTATCAT
1 CTCCTG--TCT-CTACTATC-T
*
4096607 CCCTCCTATCTCTACTATCT
1 --CTCCTGTCTCTACTATCT
4096627 CTCCTGTCTCT
1 CTCCTGTCTCT
4096638 CCTCCTATCA
Statistics
Matches: 41, Mismatches: 6, Indels: 12
0.69 0.10 0.20
Matches are distributed among these distances:
18 15 0.37
20 4 0.10
21 13 0.32
22 4 0.10
24 5 0.12
ACGTcount: A:0.10, C:0.44, G:0.03, T:0.44
Consensus pattern (18 bp):
CTCCTGTCTCTACTATCT
Found at i:4099575 original size:22 final size:21
Alignment explanation
Indices: 4099550--4099593 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
4099540 GCAAAAACAG
*
4099550 AAAATGAAAGTAACAAGCTTGA
1 AAAAT-AAACTAACAAGCTTGA
* *
4099572 AAAATATACTAACAAGGTTGA
1 AAAATAAACTAACAAGCTTGA
4099593 A
1 A
4099594 TAGGTTGGTT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
21 14 0.74
22 5 0.26
ACGTcount: A:0.55, C:0.09, G:0.16, T:0.20
Consensus pattern (21 bp):
AAAATAAACTAACAAGCTTGA
Found at i:4104478 original size:79 final size:78
Alignment explanation
Indices: 4104385--4104599 Score: 270
Period size: 79 Copynumber: 2.7 Consensus size: 78
4104375 AGACGCTCGA
* *
4104385 ATGACTAGGGCAGAATGCAAATGTGTTGATTCAAGACCAGCGACATTAGGCTTAGAAGGCAGGTT
1 ATGACTAGGGCAGAATGCCAATGTGTTGATTCAAGACCAGCGACATT-GGCTTAGAAGGAAGGTT
* *
4104450 GTGACAAATGTCGC
65 GTAACAAATGCCGC
* *
4104464 ATGACTAGGGCAGAATGCCAATGTGCTGATTCAA-AGCCACCGACATTGGCCTTAGAAGGAAGGT
1 ATGACTAGGGCAGAATGCCAATGTGTTGATTCAAGA-CCAGCGACATTGG-CTTAGAAGGAAGGT
*
4104528 TTTAACAAATGCCGC
64 TGTAACAAATGCCGC
* * * * * *
4104543 ATGACTAAGGTAGAATGCCAATGTGTTGATTAAAGGCTAGTGACATTGGGCTTAGAA
1 ATGACTAGGGCAGAATGCCAATGTGTTGATTCAAGACCAGCGACATT-GGCTTAGAA
4104600 AGAGATGCCA
Statistics
Matches: 117, Mismatches: 15, Indels: 8
0.84 0.11 0.06
Matches are distributed among these distances:
78 3 0.03
79 112 0.96
80 2 0.02
ACGTcount: A:0.32, C:0.17, G:0.27, T:0.24
Consensus pattern (78 bp):
ATGACTAGGGCAGAATGCCAATGTGTTGATTCAAGACCAGCGACATTGGCTTAGAAGGAAGGTTG
TAACAAATGCCGC
Found at i:4105241 original size:35 final size:35
Alignment explanation
Indices: 4105167--4105263 Score: 113
Period size: 35 Copynumber: 2.8 Consensus size: 35
4105157 TGTGCCACTG
* * ** *
4105167 ACTTGTGTGGACTTTGGCAAAGGTTTCTATCGTCG
1 ACTTGTGTGGACTTTGGCAAAGGTTTTTACCACCA
* *
4105202 ACTTGTGTGGACTTTGCCAAAGGTTTTTGCCACCA
1 ACTTGTGTGGACTTTGGCAAAGGTTTTTACCACCA
* *
4105237 ACTTGTGTAGACTTTGGAAAAGGTTTT
1 ACTTGTGTGGACTTTGGCAAAGGTTTT
4105264 GTTGCCACTG
Statistics
Matches: 52, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
35 52 1.00
ACGTcount: A:0.21, C:0.16, G:0.26, T:0.37
Consensus pattern (35 bp):
ACTTGTGTGGACTTTGGCAAAGGTTTTTACCACCA
Found at i:4105352 original size:32 final size:32
Alignment explanation
Indices: 4105311--4105427 Score: 171
Period size: 32 Copynumber: 3.7 Consensus size: 32
4105301 GTTGCCATTG
*
4105311 ACTCGTGTGGGCTTAAGAAGAGGTCACCACCA
1 ACTCGTGTGGGCTTAAGAAGAGGTCGCCACCA
* *
4105343 ACTCGTGTGGGCTTAAGAAGACGTCGTCACCA
1 ACTCGTGTGGGCTTAAGAAGAGGTCGCCACCA
* * * *
4105375 AATTGTGTGGGCTTAAGAAGAGATGGCCACCA
1 ACTCGTGTGGGCTTAAGAAGAGGTCGCCACCA
4105407 ACTCGTGTGGGCTTAAGAAGA
1 ACTCGTGTGGGCTTAAGAAGA
4105428 ATCATGTGAC
Statistics
Matches: 74, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
32 74 1.00
ACGTcount: A:0.28, C:0.21, G:0.30, T:0.21
Consensus pattern (32 bp):
ACTCGTGTGGGCTTAAGAAGAGGTCGCCACCA
Found at i:4105416 original size:64 final size:64
Alignment explanation
Indices: 4105311--4105978 Score: 698
Period size: 64 Copynumber: 10.5 Consensus size: 64
4105301 GTTGCCATTG
** * * *
4105311 ACTCGTGTGGGCTTAAGAAGAGGTCACCACCAACTCGTGTGGGCTTAAGAAGACGTCGTCACCA
1 ACTCGTGTGGGCTTAAGAAGAGGTTGCCACCAACTCATGTGGGCTTAAGAAGAGGTCGCCACCA
* * * * *
4105375 AATTGTGTGGGCTTAAGAAGAGATGGCCACCAACTCGTGTGGGCTTAAG-A-A----G-----A
1 ACTCGTGTGGGCTTAAGAAGAGGTTGCCACCAACTCATGTGGGCTTAAGAAGAGGTCGCCACCA
* ** ** * * * *
4105428 A-TCATGTGACCTTAAGAAGAGGTCACCACCAAACTCGTATAGGCTTAAGAAGAGGTCACCACCA
1 ACTCGTGTGGGCTTAAGAAGAGGTTGCCACC-AACTCATGTGGGCTTAAGAAGAGGTCGCCACCA
* * * * * * * * **
4105492 ACTCGTGTGGGTTTAAAAAGAGATGGCCGCCAACTCATGTTGGCTGAAGAAAAGGTTACCACCA
1 ACTCGTGTGGGCTTAAGAAGAGGTTGCCACCAACTCATGTGGGCTTAAGAAGAGGTCGCCACCA
* * * *
4105556 ACTCATGTGAGCTAAAGAAGAGGTTGCTACCAAACTCATGTGGGCTTAAGAAGAGGTCGCCACCA
1 ACTCGTGTGGGCTTAAGAAGAGGTTGCCACC-AACTCATGTGGGCTTAAGAAGAGGTCGCCACCA
* * *
4105621 ACTTGTGTGGGCTTAAGAAGAGGTTGCCACCAACTCATGTGGGCTTAAGAAAAGGTCACCACCAA
1 ACTCGTGTGGGCTTAAGAAGAGGTTGCCACCAACTCATGTGGGCTTAAGAAGAGGTCGCCACC-A
* ** * * *
4105686 ACTCGCGTGGGCTTAAGAAGAGGTCACCACCAACTCATGTGGGCTTAAGAAGTGGTTGCCACTTA
1 ACTCGTGTGGGCTTAAGAAGAGGTTGCCACCAACTCATGTGGGCTTAAGAAGAGGTCGCCAC-CA
* * *
4105751 ACTCGTGTGGGCTTAAGAAGTA-GTCGCCACTAAACTCATGTGGGCTTAAGAAGAGGTCACCACC
1 ACTCGTGTGGGCTTAAGAAG-AGGTTGCCAC-CAACTCATGTGGGCTTAAGAAGAGGTCGCCACC
4105815 A
64 A
* * *
4105816 ACTCATGTGGGCTTAAGAAGAGCTTGCCACCAACT-ATTGTGGGCTTAAGAAGAGGTTGCCACCA
1 ACTCGTGTGGGCTTAAGAAGAGGTTGCCACCAACTCA-TGTGGGCTTAAGAAGAGGTCGCCACCA
* * *
4105880 ACTCGTGTGGGCTTAAGAAGAGGTTACCACCAACTCATGTGGGCCTAAGAAGAGGTTGCCACCA
1 ACTCGTGTGGGCTTAAGAAGAGGTTGCCACCAACTCATGTGGGCTTAAGAAGAGGTCGCCACCA
* *
4105944 ACTCATGTGGGCCTAAGAAGAGGTTGCCACCAACT
1 ACTCGTGTGGGCTTAAGAAGAGGTTGCCACCAACT
4105979 TGTGTAGACT
Statistics
Matches: 503, Mismatches: 80, Indels: 42
0.80 0.13 0.07
Matches are distributed among these distances:
52 22 0.04
53 18 0.04
54 1 0.00
55 1 0.00
58 1 0.00
62 1 0.00
63 2 0.00
64 245 0.49
65 183 0.36
66 29 0.06
ACGTcount: A:0.30, C:0.22, G:0.27, T:0.21
Consensus pattern (64 bp):
ACTCGTGTGGGCTTAAGAAGAGGTTGCCACCAACTCATGTGGGCTTAAGAAGAGGTCGCCACCA
Found at i:4105513 original size:32 final size:32
Alignment explanation
Indices: 4105429--4105978 Score: 627
Period size: 32 Copynumber: 17.0 Consensus size: 32
4105419 TTAAGAAGAA
** **
4105429 TCATGTGACCTTAAGAAGAGGTCACCACCAAAC
1 TCATGTGGGCTTAAGAAGAGGTTGCCACC-AAC
* * * **
4105462 TCGTATAGGCTTAAGAAGAGGTCACCACCAAC
1 TCATGTGGGCTTAAGAAGAGGTTGCCACCAAC
* * * * * *
4105494 TCGTGTGGGTTTAAAAAGAGATGGCCGCCAAC
1 TCATGTGGGCTTAAGAAGAGGTTGCCACCAAC
* * * *
4105526 TCATGTTGGCTGAAGAAAAGGTTACCACCAAC
1 TCATGTGGGCTTAAGAAGAGGTTGCCACCAAC
* * *
4105558 TCATGTGAGCTAAAGAAGAGGTTGCTACCAAAC
1 TCATGTGGGCTTAAGAAGAGGTTGCCACC-AAC
*
4105591 TCATGTGGGCTTAAGAAGAGGTCGCCACCAAC
1 TCATGTGGGCTTAAGAAGAGGTTGCCACCAAC
**
4105623 TTGTGTGGGCTTAAGAAGAGGTTGCCACCAAC
1 TCATGTGGGCTTAAGAAGAGGTTGCCACCAAC
* **
4105655 TCATGTGGGCTTAAGAAAAGGTCACCACCAAAC
1 TCATGTGGGCTTAAGAAGAGGTTGCCACC-AAC
** **
4105688 TCGCGTGGGCTTAAGAAGAGGTCACCACCAAC
1 TCATGTGGGCTTAAGAAGAGGTTGCCACCAAC
* *
4105720 TCATGTGGGCTTAAGAAGTGGTTGCCACTTAAC
1 TCATGTGGGCTTAAGAAGAGGTTGCCAC-CAAC
* * *
4105753 TCGTGTGGGCTTAAGAAGTA-GTCGCCACTAAAC
1 TCATGTGGGCTTAAGAAG-AGGTTGCCAC-CAAC
**
4105786 TCATGTGGGCTTAAGAAGAGGTCACCACCAAC
1 TCATGTGGGCTTAAGAAGAGGTTGCCACCAAC
*
4105818 TCATGTGGGCTTAAGAAGAGCTTGCCACCAAC
1 TCATGTGGGCTTAAGAAGAGGTTGCCACCAAC
4105850 T-ATTGTGGGCTTAAGAAGAGGTTGCCACCAAC
1 TCA-TGTGGGCTTAAGAAGAGGTTGCCACCAAC
* *
4105882 TCGTGTGGGCTTAAGAAGAGGTTACCACCAAC
1 TCATGTGGGCTTAAGAAGAGGTTGCCACCAAC
*
4105914 TCATGTGGGCCTAAGAAGAGGTTGCCACCAAC
1 TCATGTGGGCTTAAGAAGAGGTTGCCACCAAC
*
4105946 TCATGTGGGCCTAAGAAGAGGTTGCCACCAAC
1 TCATGTGGGCTTAAGAAGAGGTTGCCACCAAC
4105978 T
1 T
4105979 TGTGTAGACT
Statistics
Matches: 444, Mismatches: 66, Indels: 15
0.85 0.13 0.03
Matches are distributed among these distances:
31 1 0.00
32 307 0.69
33 136 0.31
ACGTcount: A:0.30, C:0.23, G:0.26, T:0.21
Consensus pattern (32 bp):
TCATGTGGGCTTAAGAAGAGGTTGCCACCAAC
Found at i:4108937 original size:29 final size:29
Alignment explanation
Indices: 4108844--4108940 Score: 90
Period size: 29 Copynumber: 3.4 Consensus size: 29
4108834 GAATAAAGCT
* *
4108844 TGGAGCCCAATTCACATGTCCACGAAAAG
1 TGGAGCCCAATTCACATGTCCAAGAAGAG
* * ** * * **
4108873 TGAAGCCTAATTTGCATGT--ATGAGGCT
1 TGGAGCCCAATTCACATGTCCAAGAAGAG
4108900 TGGAGCCCAATTCACATGTCCAAGAAGAG
1 TGGAGCCCAATTCACATGTCCAAGAAGAG
4108929 TGGAGCCCAATT
1 TGGAGCCCAATT
4108941 TGCATATATT
Statistics
Matches: 49, Mismatches: 17, Indels: 4
0.70 0.24 0.06
Matches are distributed among these distances:
27 18 0.37
29 31 0.63
ACGTcount: A:0.31, C:0.23, G:0.24, T:0.23
Consensus pattern (29 bp):
TGGAGCCCAATTCACATGTCCAAGAAGAG
Found at i:4109682 original size:59 final size:62
Alignment explanation
Indices: 4109564--4109682 Score: 154
Period size: 59 Copynumber: 1.9 Consensus size: 62
4109554 CATATTTAGT
* *
4109564 GCTATTCATCATCCATAAAAACAAAAAAAGGCACAAAAAAAGTGTTCTAGAATTTTAACCTTTG
1 GCTATTCATCATCCATAAAAACAAAAAAAGG--CAAAAAAAGTGTTCTAGAAGTATAACCTTTG
* * *
4109628 GCTATTCATTATCCA-AAGAA-AAAAAAAGG-AAAAAAAGTGTTCTAGTAGTATAACC
1 GCTATTCATCATCCATAAAAACAAAAAAAGGCAAAAAAAGTGTTCTAGAAGTATAACC
4109683 CCTCTTTAAA
Statistics
Matches: 50, Mismatches: 5, Indels: 5
0.83 0.08 0.08
Matches are distributed among these distances:
59 23 0.46
62 9 0.18
63 4 0.08
64 14 0.28
ACGTcount: A:0.47, C:0.15, G:0.13, T:0.25
Consensus pattern (62 bp):
GCTATTCATCATCCATAAAAACAAAAAAAGGCAAAAAAAGTGTTCTAGAAGTATAACCTTTG
Found at i:4109755 original size:9 final size:9
Alignment explanation
Indices: 4109741--4109766 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
4109731 TCCATATTTA
4109741 AAAAAAAAG
1 AAAAAAAAG
4109750 AAAAAAAAG
1 AAAAAAAAG
4109759 AAAAAAAA
1 AAAAAAAA
4109767 AGTTAGTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.92, C:0.00, G:0.08, T:0.00
Consensus pattern (9 bp):
AAAAAAAAG
Found at i:4109755 original size:10 final size:10
Alignment explanation
Indices: 4109740--4109768 Score: 51
Period size: 9 Copynumber: 3.0 Consensus size: 10
4109730 TTCCATATTT
4109740 AAAAAAAAAG
1 AAAAAAAAAG
4109750 -AAAAAAAAG
1 AAAAAAAAAG
4109759 AAAAAAAAAG
1 AAAAAAAAAG
4109769 TTAGTTATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
9 9 0.50
10 9 0.50
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (10 bp):
AAAAAAAAAG
Found at i:4109886 original size:28 final size:29
Alignment explanation
Indices: 4109824--4109887 Score: 78
Period size: 28 Copynumber: 2.3 Consensus size: 29
4109814 TTCTTCTTTA
* *
4109824 TTGATTTCTTTTCCTTTGAAATTTATTGC
1 TTGATTTCGTTTCCTTTCAAATTTATTGC
* *
4109853 TT-ATTTCGTTTCCTTTCATATTTCTTG-
1 TTGATTTCGTTTCCTTTCAAATTTATTGC
4109880 TTGATTTC
1 TTGATTTC
4109888 ACTTCCTTGA
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
27 2 0.07
28 26 0.87
29 2 0.07
ACGTcount: A:0.14, C:0.16, G:0.09, T:0.61
Consensus pattern (29 bp):
TTGATTTCGTTTCCTTTCAAATTTATTGC
Found at i:4112033 original size:165 final size:166
Alignment explanation
Indices: 4111862--4113000 Score: 1332
Period size: 166 Copynumber: 6.9 Consensus size: 166
4111852 ATTCTTTCCG
* * *
4111862 TTTTCGAAATACGAAGTTTTCTACTTCGTAAATTTTTTCGTGAGGATTCTTCTTGGTTTTCAAAT
1 TTTTCGAAATACGAAGTTTTCTACTTCGTAAATTTTTTCGGGAGGATTTTTCTTGGTTTT-TAAT
* *
4111927 TTTT-AAATTCATCAAATATTATTATTTATTTCATATTAATTTAGTTTTCAAAAATTTATTCATT
65 TTTTAAAATTCATCAAATATTATTATTTATTTCATATTAATTCAGTTTTCAAAAATTCATTCATT
4111991 TCCATAAATTTTGAA-TTTTTCCTTGAAATTTCCTTT
130 TCCATAAATTTTGAATTTTTTCCTTGAAATTTCCTTT
* * **
4112027 TTTTCGAAATAC-AGAGTTTTCTACTCCGTAAATTTTTTAGGGACAATTTTTCTTGGTTTTTAAT
1 TTTTCGAAATACGA-AGTTTTCTACTTCGTAAATTTTTTCGGGAGGATTTTTCTTGGTTTTTAAT
* *
4112091 TTTTAAAATTTATC-AA-A-TA-T-TTTATTTCATATTAATTCAGTTTTCAAAAATTCCTTCATT
65 TTTTAAAATTCATCAAATATTATTATTTATTTCATATTAATTCAGTTTTCAAAAATTCATTCATT
* * *
4112151 TTCATAAATTTTGAATTTTTTTCTTGAAATTTCC-CT
130 TCCATAAATTTTGAATTTTTTCCTTGAAATTTCCTTT
* * *
4112187 TTTTCTGAAATACGGAGTTTTCTACTTCAT-AATTTTTTTGGGAGGATTTTTCTTGGTTTTTAAT
1 TTTTC-GAAATACGAAGTTTTCTACTTCGTAAATTTTTTCGGGAGGATTTTTCTTGGTTTTTAAT
* * * *
4112251 TTTTAAAATTTATCAAATATAATTATTTATTTTATATTAATTCATTTTTGC-AAAATTCATTCAT
65 TTTTAAAATTCATCAAATATTATTATTTATTTCATATTAATTCAGTTTT-CAAAAATTCATTCAT
*
4112315 TTCCATAAAATTTGAATTTTTTCCTTGAAATTTCCCTTT
129 TTCCATAAATTTTGAATTTTTTCCTTGAAATTT-CCTTT
* * * * * * **
4112354 TTTTAGAAATACGGAGTTTTTTACGTCGTAAATTTTTTCGAGAAGATTTTTCACGGTTTTTAATT
1 TTTTCGAAATACGAAGTTTTCTACTTCGTAAATTTTTTCGGGAGGATTTTTCTTGGTTTTTAATT
* * * * * *
4112419 TTTAAAATTCATAAAATATTATTTTTTATTTTATATTAATTCAGTTTTTAAAAATTCTTTTATTT
66 TTTAAAATTCATCAAATATTATTATTTATTTCATATTAATTCAGTTTTCAAAAATTCATTCATTT
* * *
4112484 TCATGAATTTTGAATTTTTTCCTTGAAA-ATCCTCTT
131 CCATAAATTTTGAATTTTTTCCTTGAAATTTCCT-TT
* * *
4112520 TTTTCGAAATACGGAGTTTTCTACTTCATAATTTTTTTCGGGAGGATTTTTCTTGGTTTTTAATT
1 TTTTCGAAATACGAAGTTTTCTACTTCGTAAATTTTTTCGGGAGGATTTTTCTTGGTTTTTAATT
*
4112585 TTTAAAATTTATCAAATATTATTATTTATTTCATATTAATTCAGTTTTCAAAAATTCATTCATTT
66 TTTAAAATTCATCAAATATTATTATTTATTTCATATTAATTCAGTTTTCAAAAATTCATTCATTT
*
4112650 CCATAAATTTTGAATTTTTTCTTTGAAA-TTCGCTTT
131 CCATAAATTTTGAATTTTTTCCTTGAAATTTC-CTTT
* * * *
4112686 TTTCCAGAATATA-G-AGTTTTCTAC-TCTGTAAATTTTTTTGAGAGGATTTTTCTT-ATTTTTA
1 TTTTC-GAA-ATACGAAGTTTTCTACTTC-GTAAATTTTTTCGGGAGGATTTTTCTTGGTTTTTA
* *
4112747 ATTTTTAAAATTCATAAAATATTATTATTTATTTCAAATTAATTCAGTTTTCAAAAATTCATTCA
63 ATTTTTAAAATTCATCAAATATTATTATTTATTTCATATTAATTCAGTTTTCAAAAATTCATTCA
* * * *
4112812 TTTCCATAAATTTCGAATTTTTTTCTTGAAAATCCCTTT
128 TTTCCATAAATTTTGAATTTTTTCCTTGAAATTTCCTTT
* * * * * **
4112851 TTTTCCGAGAA-AC-ATAGTTTTCTTCTCCATAAAGTTTTTT-GGG-GGTTTTTTCTCGGTTTAA
1 TTTT-CGA-AATACGA-AGTTTTCTACTTCGTAAA-TTTTTTCGGGAGGATTTTTCTTGGTTTTT
* * * * * ** * * *
4112912 AATTTTTAAAATTCATCTAATATTGTCATTGAATTCCCATTAATTCAGTTTTGAAAATTTTAATT
62 AATTTTTAAAATTCATCAAATATTATTATTTATTTCATATTAATTCAGTTTTCAAAA-ATTCATT
* *
4112977 TATTT-CATTAATTTTGAATTTTTT
126 CATTTCCATAAATTTTGAATTTTTT
4113001 GGCATATATT
Statistics
Matches: 838, Mismatches: 106, Indels: 59
0.84 0.11 0.06
Matches are distributed among these distances:
160 102 0.12
161 40 0.05
162 3 0.00
163 2 0.00
164 12 0.01
165 244 0.29
166 294 0.35
167 138 0.16
168 3 0.00
ACGTcount: A:0.29, C:0.11, G:0.08, T:0.52
Consensus pattern (166 bp):
TTTTCGAAATACGAAGTTTTCTACTTCGTAAATTTTTTCGGGAGGATTTTTCTTGGTTTTTAATT
TTTAAAATTCATCAAATATTATTATTTATTTCATATTAATTCAGTTTTCAAAAATTCATTCATTT
CCATAAATTTTGAATTTTTTCCTTGAAATTTCCTTT
Found at i:4112549 original size:332 final size:329
Alignment explanation
Indices: 4111862--4113000 Score: 1423
Period size: 331 Copynumber: 3.5 Consensus size: 329
4111852 ATTCTTTCCG
* * * * *
4111862 TTTTCGAAATACGAAGTTTTCTACTTCGTAAATTTTTTCGTGAGGATTCTTCTTGGTTTTCAAAT
1 TTTTCGAAATACGGAGTTTTCTACTTCATAAATTTTTTTGGGAGGATTTTTCTTGGTTTT-AAAT
* *
4111927 TTTT-AAATTCATCAAATATTATTATTTATTTCATATTAATTTAGTTTTCAAAAATTTATTCATT
65 TTTTAAAATTCATCAAATATTATTATTTATTTCATATTAATTCAGTTTTCAAAAATTCATTCATT
*
4111991 TCCATAAATTTTGAA-TTTTTCCTTGAAATTT-CCTTTTTTTCGAAATACAGAGTTTTCTACTCC
130 TCCATAAATTTTGAATTTTTTCCTTGAAATTTCCCTTTTTTTAGAAATAC-GAGTTTTCTACT-C
* * *
4112054 GTAAATTTTTTAGGGACA-ATTTTTCTTGGTTTTTAATTTTTAAAATTTAT-CAA-A-TA--TTT
193 GTAAATTTTTTAGAGA-AGATTTTTC-TGGTTTTTAATTTTTAAAATTCATAAAATATTATTTTT
*
4112113 TATTTCATATTAATTCAGTTTTCAAAAATTCCTTCATTTTCATAAATTTTGAATTTTTTTCTTGA
256 TATTTCATATTAATTCAGTTTTCAAAAATTCATTCATTTTCATAAATTTTGAATTTTTTTCTTGA
*
4112178 AATTTCCC-T
321 AA-ATCCCTT
*
4112187 TTTTCTGAAATACGGAGTTTTCTACTTCAT-AATTTTTTTGGGAGGATTTTTCTTGGTTTTTAAT
1 TTTTC-GAAATACGGAGTTTTCTACTTCATAAATTTTTTTGGGAGGATTTTTCTTGGTTTTAAAT
* * * *
4112251 TTTTAAAATTTATCAAATATAATTATTTATTTTATATTAATTCATTTTTGC-AAAATTCATTCAT
65 TTTTAAAATTCATCAAATATTATTATTTATTTCATATTAATTCAGTTTT-CAAAAATTCATTCAT
* *
4112315 TTCCATAAAATTTGAATTTTTTCCTTGAAATTTCCCTTTTTTTAGAAATACGGAGTTTTTTACGT
129 TTCCATAAATTTTGAATTTTTTCCTTGAAATTTCCCTTTTTTTAGAAATAC-GAGTTTTCTAC-T
* *
4112380 CGTAAATTTTTTCGAGAAGATTTTTCACGGTTTTTAATTTTTAAAATTCATAAAATATTATTTTT
192 CGTAAATTTTTTAGAGAAGATTTTTC-TGGTTTTTAATTTTTAAAATTCATAAAATATTATTTTT
* * * * * *
4112445 TATTTTATATTAATTCAGTTTTTAAAAATTCTTTTATTTTCATGAATTTTGAATTTTTTCCTTGA
256 TATTTCATATTAATTCAGTTTTCAAAAATTCATTCATTTTCATAAATTTTGAATTTTTTTCTTGA
4112510 AAATCCTCTT
321 AAATCC-CTT
*
4112520 TTTTCGAAATACGGAGTTTTCTACTTCAT-AATTTTTTTCGGGAGGATTTTTCTTGGTTTTTAAT
1 TTTTCGAAATACGGAGTTTTCTACTTCATAAATTTTTTT-GGGAGGATTTTTCTTGGTTTTAAAT
*
4112584 TTTTAAAATTTATCAAATATTATTATTTATTTCATATTAATTCAGTTTTCAAAAATTCATTCATT
65 TTTTAAAATTCATCAAATATTATTATTTATTTCATATTAATTCAGTTTTCAAAAATTCATTCATT
* * *
4112649 TCCATAAATTTTGAATTTTTTCTTTGAAA-TTCGCTTTTTTCCAGAATATA-GAGTTTTCTACTC
130 TCCATAAATTTTGAATTTTTTCCTTGAAATTTCCCTTTTTT-TAGAA-ATACGAGTTTTCTACTC
* * ** *
4112712 TGTAAATTTTTTTGAGAGGATTTTTCTTATTTTTAATTTTTAAAATTCATAAAATATTATTATTT
193 -GTAAATTTTTTAGAGAAGATTTTTCTGGTTTTTAATTTTTAAAATTCATAAAATATTATTTTTT
* * *
4112777 ATTTCAAATTAATTCAGTTTTCAAAAATTCATTCATTTCCATAAATTTCGAATTTTTTTCTTGAA
257 ATTTCATATTAATTCAGTTTTCAAAAATTCATTCATTTTCATAAATTTTGAATTTTTTTCTTGAA
4112842 AATCCCTTT
322 AATCCC-TT
** * * * * * *
4112851 TTTTCCGAGAA-ACATAGTTTTCTTCTCCATAAAGTTTTTTGGG-GGTTTTTTCTCGGTTTAAAA
1 TTTT-CGA-AATACGGAGTTTTCTACTTCATAAATTTTTTTGGGAGGATTTTTCTTGGTTTTAAA
* * * * * ** * * * *
4112914 TTTTTAAAATTCATCTAATATTGTCATTGAATTCCCATTAATTCAGTTTTGAAAATTTTAATTTA
64 TTTTTAAAATTCATCAAATATTATTATTTATTTCATATTAATTCAGTTTTCAAAA-ATTCATTCA
*
4112979 TTT-CATTAATTTTGAATTTTTT
128 TTTCCATAAATTTTGAATTTTTT
4113001 GGCATATATT
Statistics
Matches: 716, Mismatches: 74, Indels: 42
0.86 0.09 0.05
Matches are distributed among these distances:
324 7 0.01
325 98 0.14
326 40 0.06
327 70 0.10
328 3 0.00
329 1 0.00
330 3 0.00
331 187 0.26
332 172 0.24
333 132 0.18
334 3 0.00
ACGTcount: A:0.29, C:0.11, G:0.08, T:0.52
Consensus pattern (329 bp):
TTTTCGAAATACGGAGTTTTCTACTTCATAAATTTTTTTGGGAGGATTTTTCTTGGTTTTAAATT
TTTAAAATTCATCAAATATTATTATTTATTTCATATTAATTCAGTTTTCAAAAATTCATTCATTT
CCATAAATTTTGAATTTTTTCCTTGAAATTTCCCTTTTTTTAGAAATACGAGTTTTCTACTCGTA
AATTTTTTAGAGAAGATTTTTCTGGTTTTTAATTTTTAAAATTCATAAAATATTATTTTTTATTT
CATATTAATTCAGTTTTCAAAAATTCATTCATTTTCATAAATTTTGAATTTTTTTCTTGAAAATC
CCTT
Found at i:4113304 original size:15 final size:15
Alignment explanation
Indices: 4113284--4113316 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
4113274 AGCTGAAGGA
*
4113284 AGAGAGAGAAAAGAG
1 AGAGAGAGAAAAAAG
4113299 AGAGAGAGAAAAAAG
1 AGAGAGAGAAAAAAG
4113314 AGA
1 AGA
4113317 AAAACAAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.64, C:0.00, G:0.36, T:0.00
Consensus pattern (15 bp):
AGAGAGAGAAAAAAG
Found at i:4113306 original size:17 final size:17
Alignment explanation
Indices: 4113284--4113316 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
4113274 AGCTGAAGGA
*
4113284 AGAGAGAGAAAAGAGAG
1 AGAGAGAAAAAAGAGAG
4113301 AGAGAGAAAAAAGAGA
1 AGAGAGAAAAAAGAGA
4113317 AAAACAAATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.64, C:0.00, G:0.36, T:0.00
Consensus pattern (17 bp):
AGAGAGAAAAAAGAGAG
Found at i:4115110 original size:155 final size:153
Alignment explanation
Indices: 4114914--4115287 Score: 438
Period size: 154 Copynumber: 2.5 Consensus size: 153
4114904 GTTGTCTCTA
* * * * *
4114914 GGTCTACTTTTATGCCAAAGGTAGATATTTAGGATAGGTTCATCTCATCGATT-ATCCTTTTTAA
1 GGTCCACTTTTATGCCAAAGGTAGACAGTTAGGATAGGTTCATCCCAT---TTAAACCTTTTTAA
* ** * * * *
4114978 GTTCTTTAGGGATATCAGGTACTTTTATGTTGAAGGTATCCCTTAGGGGTATTTTCGTAATTTTT
63 GTCCTTTAGGGATATCAGGTACTTTTACATCGAAGGTATCCCGTAGGGGCATTTTCATAATTTTT
*
4115043 CTAAACCAACTCCTAGGTTGTCATCG
128 CAAAACCAACTCCTAGGTTGTCATCG
* * *
4115069 GGTCCACTTTTATGCCAAAGGTAGGCAGTTAGGATATGTTCATCCCATTTCAAACCTTTTTTAGT
1 GGTCCACTTTTATGCCAAAGGTAGACAGTTAGGATAGGTTCATCCCATTT-AAACCTTTTTAAGT
*
4115134 CCTTTAGGGGTATCAGGTACTTTTACATCGAAGGTATCCCGTAGGGGCATTTTCATAATTTTTCA
65 CCTTTAGGGATATCAGGTACTTTTACATCGAAGGTATCCCGTAGGGGCATTTTCATAATTTTTCA
* *
4115199 AAATCAACTCC-----TGTCACCG
130 AAACCAACTCCTAGGTTGTCATCG
* * * *
4115218 GGGCCACTTTTATGCCAAATGT-GAGTAGTTTGGATAGGTTCATCCCATCTTAAACCTTTTTAAG
1 GGTCCACTTTTATGCCAAAGGTAGA-CAGTTAGGATAGGTTCATCCCAT-TTAAACCTTTTTAAG
4115282 TCCTTT
64 TCCTTT
4115288 TGAGGTACCG
Statistics
Matches: 189, Mismatches: 26, Indels: 14
0.83 0.11 0.06
Matches are distributed among these distances:
148 1 0.01
149 65 0.34
150 2 0.01
152 2 0.01
154 77 0.41
155 42 0.22
ACGTcount: A:0.24, C:0.19, G:0.19, T:0.38
Consensus pattern (153 bp):
GGTCCACTTTTATGCCAAAGGTAGACAGTTAGGATAGGTTCATCCCATTTAAACCTTTTTAAGTC
CTTTAGGGATATCAGGTACTTTTACATCGAAGGTATCCCGTAGGGGCATTTTCATAATTTTTCAA
AACCAACTCCTAGGTTGTCATCG
Found at i:4123090 original size:48 final size:47
Alignment explanation
Indices: 4122964--4123387 Score: 440
Period size: 48 Copynumber: 8.9 Consensus size: 47
4122954 ATCTTCATTT
* *
4122964 ATTTGACTATATTGGTGTTAGAGCCTAGTCAAACTC-TTTCATCCCTC
1 ATTTGAC-GTATTGGTGTTAGGGCCTAGTCAAACTCTTTTCATCCCTC
* * * * * *
4123011 ATTTCACTGTATTAGTGTTATGGCCTAGTCAAACTCTTATCTTCTCTC
1 ATTTGAC-GTATTGGTGTTAGGGCCTAGTCAAACTCTTTTCATCCCTC
* * *
4123059 GTTTGACGATATTGGTGTTATGGCCTGGTCAAACTC-TTTCAT-CCTC
1 ATTTGACG-TATTGGTGTTAGGGCCTAGTCAAACTCTTTTCATCCCTC
* * * * *
4123105 ATTTGACTGTATTGGTGTTAGGGCTTGGTCAAACTCTTTTTATTCCTT
1 ATTTGAC-GTATTGGTGTTAGGGCCTAGTCAAACTCTTTTCATCCCTC
* * * *
4123153 ATTTGACTGTATTGGTTTTGGGGCCTAGTCAAACTTTTTTCATCTCTC
1 ATTTGAC-GTATTGGTGTTAGGGCCTAGTCAAACTCTTTTCATCCCTC
* * *
4123201 ATTTGATTGTATTGGTGTTAGGGCCTGGTCAAACTTTTTTCATCCCTC
1 ATTTGA-CGTATTGGTGTTAGGGCCTAGTCAAACTCTTTTCATCCCTC
* * *
4123249 GTTTGACTGTATTGGTGTTAGGGCTTTGTCAAACTCTTTTCATCCCTC
1 ATTTGAC-GTATTGGTGTTAGGGCCTAGTCAAACTCTTTTCATCCCTC
* * * *
4123297 ATTTGACTTCATTAGTGTTAGAGCCTGGTCAAACTCTTTTCATCCCTC
1 ATTTGACGT-ATTGGTGTTAGGGCCTAGTCAAACTCTTTTCATCCCTC
* * * *
4123345 GTTTGATTGTATTGGTGTTAGGACCTAGTCAAACTCTTCTCAT
1 ATTTGA-CGTATTGGTGTTAGGGCCTAGTCAAACTCTTTTCAT
4123388 TTCAGTCTGA
Statistics
Matches: 315, Mismatches: 53, Indels: 17
0.82 0.14 0.04
Matches are distributed among these distances:
46 34 0.11
47 43 0.14
48 237 0.75
49 1 0.00
ACGTcount: A:0.19, C:0.20, G:0.18, T:0.43
Consensus pattern (47 bp):
ATTTGACGTATTGGTGTTAGGGCCTAGTCAAACTCTTTTCATCCCTC
Found at i:4123254 original size:96 final size:96
Alignment explanation
Indices: 4122965--4123387 Score: 509
Period size: 96 Copynumber: 4.4 Consensus size: 96
4122955 TCTTCATTTA
* * *
4122965 TTTGACTATATTGGTGTTAGAGCCTAGTCAAAC-TCTTTCATCCCTCATTTCACTGTATTAGTGT
1 TTTGACTGTATTGGTGTTAGGGCCTAGTCAAACTTCTTTCATCCCTCATTTGACTGTATTAGTGT
* * * * *
4123029 TATGGCCTAGTCAAACTCTTATCTTCTCTCG
66 TAGGGCCTGGTCAAACTCTTTTCATCCCTCG
* * *
4123060 TTTGAC-GATATTGGTGTTATGGCCTGGTCAAAC-TCTTTCAT-CCTCATTTGACTGTATTGGTG
1 TTTGACTG-TATTGGTGTTAGGGCCTAGTCAAACTTCTTTCATCCCTCATTTGACTGTATTAGTG
* * * **
4123122 TTAGGGCTTGGTCAAACTCTTTTTATTCCTTA
65 TTAGGGCCTGGTCAAACTCTTTTCATCCCTCG
* * * * * *
4123154 TTTGACTGTATTGGTTTTGGGGCCTAGTCAAACTTTTTTCATCTCTCATTTGATTGTATTGGTGT
1 TTTGACTGTATTGGTGTTAGGGCCTAGTCAAACTTCTTTCATCCCTCATTTGACTGTATTAGTGT
*
4123219 TAGGGCCTGGTCAAACTTTTTTCATCCCTCG
66 TAGGGCCTGGTCAAACTCTTTTCATCCCTCG
* *
4123250 TTTGACTGTATTGGTGTTAGGGCTTTGTCAAAC-TCTTTTCATCCCTCATTTGACT-TCATTAGT
1 TTTGACTGTATTGGTGTTAGGGCCTAGTCAAACTTC-TTTCATCCCTCATTTGACTGT-ATTAGT
*
4123313 GTTAGAGCCTGGTCAAACTCTTTTCATCCCTCG
64 GTTAGGGCCTGGTCAAACTCTTTTCATCCCTCG
* *
4123346 TTTGATTGTATTGGTGTTAGGACCTAGTCAAAC-TCTTCTCAT
1 TTTGACTGTATTGGTGTTAGGGCCTAGTCAAACTTCTT-TCAT
4123388 TTCAGTCTGA
Statistics
Matches: 278, Mismatches: 43, Indels: 13
0.83 0.13 0.04
Matches are distributed among these distances:
94 68 0.24
95 48 0.17
96 162 0.58
ACGTcount: A:0.18, C:0.20, G:0.18, T:0.43
Consensus pattern (96 bp):
TTTGACTGTATTGGTGTTAGGGCCTAGTCAAACTTCTTTCATCCCTCATTTGACTGTATTAGTGT
TAGGGCCTGGTCAAACTCTTTTCATCCCTCG
Found at i:4123328 original size:144 final size:142
Alignment explanation
Indices: 4122964--4123387 Score: 534
Period size: 144 Copynumber: 3.0 Consensus size: 142
4122954 ATCTTCATTT
* * * *
4122964 ATTTGACTATATTGGTGTTAGAGCCTAGTCAAACTC-TTTCATCCCTCATTTCACTGTATTAGTG
1 ATTTGACTGTATTGGTGTTAGGGCTTAGTCAAACTCTTTTCATCCCTCATTTGACTGTATTAGTG
* * * *
4123028 TTATGGCCTAGTCAAACTCTTATCTTCTCTCGTTTGA-CGATATTGGTGTTATGGCCTGGTCAAA
66 TTA-GGCCTAGTCAAACTCTTTTCATCTCTCGTTTGATTG-TATTGGTGTTAGGGCCTGGTCAAA
4123092 C-TCTTTCATCCTC
129 CTTCTTTCATCCTC
* * * * * *
4123105 ATTTGACTGTATTGGTGTTAGGGCTTGGTCAAACTCTTTTTATTCCTTATTTGACTGTATTGGTT
1 ATTTGACTGTATTGGTGTTAGGGCTTAGTCAAACTCTTTTCATCCCTCATTTGACTGTATTAGTG
* * *
4123170 TTGGGGCCTAGTCAAACTTTTTTCATCTCTCATTTGATTGTATTGGTGTTAGGGCCTGGTCAAAC
66 TT-AGGCCTAGTCAAACTCTTTTCATCTCTCGTTTGATTGTATTGGTGTTAGGGCCTGGTCAAAC
*
4123235 TTTTTTCATCCCTC
130 TTCTTTCAT-CCTC
* *
4123249 GTTTGACTGTATTGGTGTTAGGGCTTTGTCAAACTCTTTTCATCCCTCATTTGACT-TCATTAGT
1 ATTTGACTGTATTGGTGTTAGGGCTTAGTCAAACTCTTTTCATCCCTCATTTGACTGT-ATTAGT
* * * *
4123313 GTTAGAGCCTGGTCAAACTCTTTTCATCCCTCGTTTGATTGTATTGGTGTTAGGACCTAGTCAAA
65 GTTAG-GCCTAGTCAAACTCTTTTCATCTCTCGTTTGATTGTATTGGTGTTAGGGCCTGGTCAAA
4123378 C-TCTTCTCAT
129 CTTCTT-TCAT
4123388 TTCAGTCTGA
Statistics
Matches: 242, Mismatches: 33, Indels: 13
0.84 0.11 0.05
Matches are distributed among these distances:
141 32 0.13
142 77 0.32
143 13 0.05
144 120 0.50
ACGTcount: A:0.19, C:0.20, G:0.18, T:0.43
Consensus pattern (142 bp):
ATTTGACTGTATTGGTGTTAGGGCTTAGTCAAACTCTTTTCATCCCTCATTTGACTGTATTAGTG
TTAGGCCTAGTCAAACTCTTTTCATCTCTCGTTTGATTGTATTGGTGTTAGGGCCTGGTCAAACT
TCTTTCATCCTC
Found at i:4123886 original size:170 final size:169
Alignment explanation
Indices: 4123597--4124430 Score: 741
Period size: 170 Copynumber: 5.0 Consensus size: 169
4123587 TCCTCATTTG
* * * * *
4123597 CCTGTCGGCTCAGTCTTGGGTAAACTCCTTTACCCCTTTGTTAACTTATCGATTCAGCCCTAGTC
1 CCTGTCGGCTCAGTCTT-AGTAAACTTCTTTACCCCTTTGTTGACTTATCGGTTTAGCCCTAGTC
** * * * * * *
4123662 GACCTTATT-TCCCTTGTTTACCTGTCGACCTAGTCCTAATTGAATTTTTTTATCCTTTGTTGAC
65 GACCTT-TTATCCCTTGTTTACCTACCAACTTAATCCTAAGTAAATTTCTTTATCCTTTGTTGAC
* * * * * *
4123726 TTGTTGATTTTATCCCAATTAACCATTGTGCTATTCGTCTA
129 TTGTCGATTTTATCCCAGTCAACCATTATACTATTCATCTA
* * *
4123767 CCTATCGGCTCAGTCCTAGTTAAACTTCTTTACCCCTTTGTTGACTTATCGGTTTAGCCCTAGTT
1 CCTGTCGGCTCAGTCTTAG-TAAACTTCTTTACCCCTTTGTTGACTTATCGGTTTAGCCCTAGTC
* * * * **
4123832 GATCTTTTATCCCTTGTTTACTTGCCAACTTAATCATGGGTAAATTTCTTTATCCTTTGTTGACT
65 GACCTTTTATCCCTTGTTTACCTACCAACTTAATCCTAAGTAAATTTCTTTATCCTTTGTTGACT
* * *
4123897 TGTCAATTTTATCCTAGTCAACCATTGTACTATTCAT-TGA
130 TGTCGATTTTATCCCAGTCAACCATTATACTATTCATCT-A
* ** *
4123937 CCTGTCGACTCAGTCTTGAGTAAAC-TCTTTTACCCCTTTGTTGACTTATCATTTTAGCCTTAGT
1 CCTGTCGGCTCAGTCTT-AGTAAACTTC-TTTACCCCTTTGTTGACTTATCGGTTTAGCCCTAGT
* * *** * ** *
4124001 TGACCTTTTATCCCTTGTTTTCCTACTGGCTTAGT-CTTTGATAAATTTCTTTATCCTTTGTCGA
64 CGACCTTTTATCCCTTGTTTACCTACCAACTTAATCCTAAG-TAAATTTCTTTATCCTTTGTTGA
* *
4124065 CTTGTTGATTTTATCCCAGTCAACCATTATACTATTCTTCTA
128 CTTGTCGATTTTATCCCAGTCAACCATTATACTATTCATCTA
* * * * *
4124107 CCTGTTGGCTGAGTCTTGGGTAAACTCCTTTACCCCTTTGTTGACTTCT-GG--TA-----A---
1 CCTGTCGGCTCAGTCTT-AGTAAACTTCTTTACCCCTTTGTTGACTTATCGGTTTAGCCCTAGTC
* * * *
4124161 -ACCTTTTATCCTTTGTTTACCTACCATCTTAATCCCAAGTAAATTTCTATATCCTTTGTTGACT
65 GACCTTTTATCCCTTGTTTACCTACCAACTTAATCCTAAGTAAATTTCTTTATCCTTTGTTGACT
*
4124225 TGTCGATTTTATCCCAGTTAACCATTATACTATTCATCTA
130 TGTCGATTTTATCCCAGTCAACCATTATACTATTCATCTA
** * ** * * * * *
4124265 TATGTCGGCTTAGTCCCGAGTAAACTTCTTTACCCCTTTGTGGTCCTATCGGTTCAGCCCTGGTC
1 CCTGTCGGCTCAGT-CTTAGTAAACTTCTTTACCCCTTTGTTGACTTATCGGTTTAGCCCTAGTC
** ** * * ** *
4124330 GACCTTTTATCCCTTGTTTACCTGTCGGCTTAGT-CTAGGGTAGCCTAT-TTTATCCTTTGTTGA
65 GACCTTTTATCCCTTGTTTACCTACCAACTTAATCCTA-AGTA-AATTTCTTTATCCTTTGTTGA
* * *
4124393 CTTCTCGATTTTATCCTAGTCAATCATTATACTATTCA
128 CTTGTCGATTTTATCCCAGTCAACCATTATACTATTCA
4124431 CTTACCTATT
Statistics
Matches: 538, Mismatches: 102, Indels: 48
0.78 0.15 0.07
Matches are distributed among these distances:
158 122 0.23
159 5 0.01
161 1 0.00
162 1 0.00
167 2 0.00
169 10 0.02
170 391 0.73
171 6 0.01
ACGTcount: A:0.19, C:0.24, G:0.14, T:0.43
Consensus pattern (169 bp):
CCTGTCGGCTCAGTCTTAGTAAACTTCTTTACCCCTTTGTTGACTTATCGGTTTAGCCCTAGTCG
ACCTTTTATCCCTTGTTTACCTACCAACTTAATCCTAAGTAAATTTCTTTATCCTTTGTTGACTT
GTCGATTTTATCCCAGTCAACCATTATACTATTCATCTA
Found at i:4124138 original size:85 final size:85
Alignment explanation
Indices: 4123868--4124153 Score: 220
Period size: 85 Copynumber: 3.4 Consensus size: 85
4123858 AACTTAATCA
* * * * *
4123868 TGGGTAAATTTCTTTA-TCCTTTGTTGACTTGTCAATTTTATCCTAGTCAACCATTGTACTATTC
1 TGGGTAAACTCCTTTACCCCTTTGTTGACTTGTTAATTTTATCCTAGTCAACCATTATACTATTC
* * *
4123932 ATTGACCTGTCGACTCAGTCT
66 -TTTACCTGTTGGCTCAGTCT
* * * * * ** * **
4123953 TGAGTAAACTCTTTTACCCCTTTGTTGACTT-ATCATTTTAGCCTTAGTTGACC-TTTTATCCCT
1 TGGGTAAACTCCTTTACCCCTTTGTTGACTTGTTAATTTTATCC-TAGTCAACCATTATA-CTAT
* * ** *
4124016 TGTTTTCCTACTGGCTTAGTCT
64 TCTTTACCTGTTGGCTCAGTCT
* * * * * * * *
4124038 TTGATAAATTTCTTTA-TCCTTTGTCGACTTGTTGATTTTATCCCAGTCAACCATTATACTATTC
1 TGGGTAAACTCCTTTACCCCTTTGTTGACTTGTTAATTTTATCCTAGTCAACCATTATACTATTC
*
4124102 TTCTACCTGTTGGCTGAGTCT
66 TT-TACCTGTTGGCTCAGTCT
4124123 TGGGTAAACTCCTTTACCCCTTTGTTGACTT
1 TGGGTAAACTCCTTTACCCCTTTGTTGACTT
4124154 CTGGTAAACC
Statistics
Matches: 144, Mismatches: 50, Indels: 13
0.70 0.24 0.06
Matches are distributed among these distances:
84 23 0.16
85 86 0.60
86 35 0.24
ACGTcount: A:0.19, C:0.22, G:0.14, T:0.45
Consensus pattern (85 bp):
TGGGTAAACTCCTTTACCCCTTTGTTGACTTGTTAATTTTATCCTAGTCAACCATTATACTATTC
TTTACCTGTTGGCTCAGTCT
Found at i:4124303 original size:328 final size:330
Alignment explanation
Indices: 4123616--4124455 Score: 847
Period size: 328 Copynumber: 2.5 Consensus size: 330
4123606 TCAGTCTTGG
* *
4123616 GTAAACTCCTTTACCCCTTTGTTAACTTATCGATTCAGCCCTAGTCGACCTTATT-TCCCTTGTT
1 GTAAACTTCTTTACCCCTTTGTTGACTTATC-ATTCAGCCCTAGTCGACCTT-TTATCCCTTGTT
* * *
4123680 TACCTGTCGACCTAGTCCTA--ATTGAATTTTTTTATCCTTTGTTGACTTGTTGATTTTATCCCA
64 TACCTGTCGGCTTAGT-CTATGA-T-AAATTTTTTATCCTTTGTTGACTTGTTGATTTTATCCCA
* * * * * *
4123743 ATTAACCATTGTGCTATTCGTCTACCTATCGGCTCAGTCCTAGTTAAACTTCTTTACCCCTTTGT
126 GTCAACCATTATACTATTCGTCTACCTATCGGCTCAGTCCTAGGTAAACTCCTTTACCCCTTTGT
* * * ***
4123808 TGACTTATCGGTTTAGCCCTAGTTGATCTTTTATCCCTTGTTTACTTGCCAACTTAATCATGGGT
191 TGACTTATCGG-TTA---C-A---GACCTTTTATCCCTTGTTTACCTACCAACTTAATCACAAGT
* * *
4123873 AAATTTCTTTATCCTTTGTTGACTTGTCAATTTTATCCTAGTCAACCATTGTACTATTCATTGAC
248 AAATTTCTATATCCTTTGTTGACTTGTCAATTTTATCCCAGTCAACCATTATACTATTCATTGAC
* **
4123938 CTGTCGACTCAGTCTTGA
313 ATGTCGACTCAGTCCCGA
* * *
4123956 GTAAAC-TCTTTTACCCCTTTGTTGACTTATCATTTTAGCCTTAGTTGACCTTTTATCCCTTGTT
1 GTAAACTTC-TTTACCCCTTTGTTGACTTATCA-TTCAGCCCTAGTCGACCTTTTATCCCTTGTT
* * * *
4124020 TTCCT-ACTGGCTTAGTCTTTGATAAATTTCTTTATCCTTTGTCGACTTGTTGATTTTATCCCAG
64 TACCTGTC-GGCTTAGTCTATGATAAATTT-TTTATCCTTTGTTGACTTGTTGATTTTATCCCAG
* * * * * *
4124084 TCAACCATTATACTATTCTTCTACCTGTTGGCTGAGTCTTGGGTAAACTCCTTTACCCCTTTGTT
127 TCAACCATTATACTATTCGTCTACCTATCGGCTCAGTCCTAGGTAAACTCCTTTACCCCTTTGTT
* * * *
4124149 GACTTCT-GG-TA-A-ACCTTTTATCCTTTGTTTACCTACCATCTTAATCCCAAGTAAATTTCTA
192 GACTTATCGGTTACAGACCTTTTATCCCTTGTTTACCTACCAACTTAATCACAAGTAAATTTCTA
* * * *
4124210 TATCCTTTGTTGACTTGTCGATTTTATCCCAGTTAACCATTATACTATTCATCT-ATATGTCGGC
257 TATCCTTTGTTGACTTGTCAATTTTATCCCAGTCAACCATTATACTATTCAT-TGACATGTCGAC
*
4124274 TTAGTCCCGA
321 TCAGTCCCGA
* * * * *
4124284 GTAAACTTCTTTACCCCTTTGTGGTCCTATCGGTTCAGCCCTGGTCGACCTTTTATCCCTTGTTT
1 GTAAACTTCTTTACCCCTTTGTTGACTTATC-ATTCAGCCCTAGTCGACCTTTTATCCCTTGTTT
* * ** * * * *
4124349 ACCTGTCGGCTTAGTCTAGGGTAGCCTATTTTATCCTTTGTTGACTTCTCGATTTTATCCTAGTC
65 ACCTGTCGGCTTAGTCTATGATA-AATTTTTTATCCTTTGTTGACTTGTTGATTTTATCCCAGTC
* * * * *
4124414 AATCATTATACTATTC-ACTTACCTATTGGCTTAGTCCCAGGT
129 AACCATTATACTATTCGTC-TACCTATCGGCTCAGTCCTAGGT
4124456 CACCCCTTTC
Statistics
Matches: 415, Mismatches: 72, Indels: 38
0.79 0.14 0.07
Matches are distributed among these distances:
327 1 0.00
328 235 0.57
329 6 0.01
332 1 0.00
337 2 0.00
339 14 0.03
340 155 0.37
341 1 0.00
ACGTcount: A:0.19, C:0.24, G:0.13, T:0.43
Consensus pattern (330 bp):
GTAAACTTCTTTACCCCTTTGTTGACTTATCATTCAGCCCTAGTCGACCTTTTATCCCTTGTTTA
CCTGTCGGCTTAGTCTATGATAAATTTTTTATCCTTTGTTGACTTGTTGATTTTATCCCAGTCAA
CCATTATACTATTCGTCTACCTATCGGCTCAGTCCTAGGTAAACTCCTTTACCCCTTTGTTGACT
TATCGGTTACAGACCTTTTATCCCTTGTTTACCTACCAACTTAATCACAAGTAAATTTCTATATC
CTTTGTTGACTTGTCAATTTTATCCCAGTCAACCATTATACTATTCATTGACATGTCGACTCAGT
CCCGA
Found at i:4125785 original size:165 final size:165
Alignment explanation
Indices: 4125411--4125898 Score: 542
Period size: 165 Copynumber: 3.0 Consensus size: 165
4125401 ATGGCTATAA
* * *
4125411 AATTTTTTAAATTCATCAAATATTATTATTTATTTTATATTAAATTATTTTTCAAAAATTCAGTC
1 AATTTTTTAAATTCATAAAATATTATTATTTATTTAATATTAAATTATTTTT-AAAAATTCATTC
* *
4125476 ATTTGCATTAGTTTTTGAATTTTTTCCTTAAAATTCTCCTATTTTCAAAATACGAAATTTTCTAC
65 ATTTTCATTAGTTTTTG-ATTTTTTCCTTAAAATTCTCCTATTATCAAAATACGAAATTTTCTAC
*** ** *
4125541 TTCGTAAATTTTTTTGAGGGGATTTTTCTTGGTTTTT
129 TTCGTAAATTTTTCACAAAGGATTTTTCTTAGTTTTT
* *
4125578 AATTTTTTAAATTCATAAAATACTATTATTTATTTAATATTAAATCTGTTTTTAAAAATTCATTC
1 AATTTTTTAAATTCATAAAATATTATTATTTATTTAATATTAAAT-TATTTTTAAAAATTCATTC
* *
4125643 ATTTTCATTAGTTTTTGATTTTTTCCTTAAAATTC-CCTAATTATCAAAATAC-AGAGTTTTGTA
65 ATTTTCATTAGTTTTTGATTTTTTCCTTAAAATTCTCCT-ATTATCAAAATACGA-AATTTTCTA
*
4125706 C-TCTGTAAA-TTTTCACAAAGGATTTTTCTTATTTTTT
128 CTTC-GTAAATTTTTCACAAAGGATTTTTCTTAGTTTTT
* * * ** *
4125743 AATTTTTAAAATTTATTAAATATTATTATTTATTCCATATTAAATTAATTTTCAAAAATTCATTC
1 AATTTTTTAAATTCATAAAATATTATTATTTATTTAATATTAAATT-ATTTTTAAAAATTCATTC
* * * * * * * * *
4125808 GTTTTCATTCGTTTTTTATTTTTTTCTTTGAAATTCTCCTTTTCTAAAAAT-CTG-AATTTTCTT
65 ATTTTCATTAGTTTTTGA-TTTTTTCCTTAAAATTCTCCTATTATCAAAATAC-GAAATTTTCTA
* *
4125871 CTCCGTAAATTTTT-A-AAGGGATTTTTCT
128 CTTCGTAAATTTTTCACAAAGGATTTTTCT
4125899 CGATTTAAAA
Statistics
Matches: 273, Mismatches: 37, Indels: 25
0.81 0.11 0.07
Matches are distributed among these distances:
164 13 0.05
165 111 0.41
166 71 0.26
167 72 0.26
168 6 0.02
ACGTcount: A:0.31, C:0.11, G:0.06, T:0.52
Consensus pattern (165 bp):
AATTTTTTAAATTCATAAAATATTATTATTTATTTAATATTAAATTATTTTTAAAAATTCATTCA
TTTTCATTAGTTTTTGATTTTTTCCTTAAAATTCTCCTATTATCAAAATACGAAATTTTCTACTT
CGTAAATTTTTCACAAAGGATTTTTCTTAGTTTTT
Found at i:4126150 original size:4 final size:4
Alignment explanation
Indices: 4126131--4126169 Score: 55
Period size: 4 Copynumber: 10.0 Consensus size: 4
4126121 TTAATTTTAA
4126131 ATTT ATTT -TATT -TTT ATTT ATTT ATTT ATTT ATTT ATTT
1 ATTT ATTT AT-TT ATTT ATTT ATTT ATTT ATTT ATTT ATTT
4126170 TGTATTCATT
Statistics
Matches: 33, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
3 3 0.09
4 30 0.91
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (4 bp):
ATTT
Found at i:4126150 original size:27 final size:27
Alignment explanation
Indices: 4126124--4126180 Score: 64
Period size: 27 Copynumber: 2.1 Consensus size: 27
4126114 CTGCTTTTTA
4126124 ATTT-TAAATTTATTTTATTTT-TATTT
1 ATTTATAAATTTA-TTTATTTTGTATTT
** *
4126150 ATTTATTTATTTATTTATTTTGTATTC
1 ATTTATAAATTTATTTATTTTGTATTT
4126177 ATTT
1 ATTT
4126181 GGTTAGGTAA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
26 12 0.46
27 14 0.54
ACGTcount: A:0.25, C:0.02, G:0.02, T:0.72
Consensus pattern (27 bp):
ATTTATAAATTTATTTATTTTGTATTT
Found at i:4127109 original size:185 final size:185
Alignment explanation
Indices: 4126797--4127162 Score: 678
Period size: 185 Copynumber: 2.0 Consensus size: 185
4126787 ATGCTGGCTG
4126797 AATATGGTGGAGAGTTGTGAAGGTTGTTTCATGCATGATTTACCTTTGATTTAATGTCTATAACT
1 AATATGGTGGAGAGTTGTGAAGGTTGTTTCATGCATGATTTACCTTTGATTTAATGTCTATAACT
* *
4126862 TATGTTATAACATGTTTTCTAGCTTTTAGAATTTAAATGTAAAGTTTGCTTTTTCTGTGTTTTCT
66 CATGTTATAACATGTTTTCTAGCTTTAAGAATTTAAATGTAAAGTTTGCTTTTTCTGTGTTTTCT
*
4126927 TTCCTTTATTCTTTTCATGCATTGGTCGAACCTTGAGGGATCCATTTCCCTAGTT
131 TTCCTTTATTCTTTTCATGCATTGGCCGAACCTTGAGGGATCCATTTCCCTAGTT
* *
4126982 AATATGGTGGAGAGTTGTGAAGGTTGTTTCATGCATGATTTAGCTTTGATTTAATTTCTATAACT
1 AATATGGTGGAGAGTTGTGAAGGTTGTTTCATGCATGATTTACCTTTGATTTAATGTCTATAACT
*
4127047 CATGTTATAACATGTTTTCTAGCTTTAAGAATTTAAATGTAAAGTTTGCTTTTTTTGTGTTTTCT
66 CATGTTATAACATGTTTTCTAGCTTTAAGAATTTAAATGTAAAGTTTGCTTTTTCTGTGTTTTCT
4127112 TTCCTTTATTCTTTTCATGCATTGGCCGAACCTTGAGGGATCCATTTCCCT
131 TTCCTTTATTCTTTTCATGCATTGGCCGAACCTTGAGGGATCCATTTCCCT
4127163 TGTTTAGTTT
Statistics
Matches: 175, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
185 175 1.00
ACGTcount: A:0.22, C:0.14, G:0.18, T:0.46
Consensus pattern (185 bp):
AATATGGTGGAGAGTTGTGAAGGTTGTTTCATGCATGATTTACCTTTGATTTAATGTCTATAACT
CATGTTATAACATGTTTTCTAGCTTTAAGAATTTAAATGTAAAGTTTGCTTTTTCTGTGTTTTCT
TTCCTTTATTCTTTTCATGCATTGGCCGAACCTTGAGGGATCCATTTCCCTAGTT
Found at i:4127931 original size:164 final size:163
Alignment explanation
Indices: 4127645--4127949 Score: 373
Period size: 164 Copynumber: 1.9 Consensus size: 163
4127635 GGCAAAATTA
**
4127645 AATTTTAATCATTTTTAATCTTTTATATTCCCATGGGCATCCGTAGAGGTATAAAAAATTTCAAA
1 AATTTTAATCATTTTTAATCTTTTATATTCCCATAAGCATCCGTAGAGGTATAAAAAATTTCAAA
* *
4127710 AACTTTTCATATATTTTCAGACTTCCATAAAGGTACAAAATGAAATTTTCGAAAATAAAT-AAAA
66 AACTTTTCATATATTCTCAGACTTCCATAAAGGTACAAAATGAAATTTTCAAAAATAAATCAAAA
*
4127774 TTAAATTAAATTTACACTTTTGTAATTGAGATC
131 TAAAATTAAATTTACACTTTTGTAATTGAGATC
* * * *
4127807 AATTTTAATCATTTTTCTAATCTTTTATATTCCTATAAGCATCTGTAGGGGTATTAAAAGATTTC
1 AATTTTAATCA-TTTT-TAATCTTTTATATTCCCATAAGCATCCGTAGAGGTA-TAAAAAATTTC
** * ** * * * ** *
4127872 AAAAGTTTTTCCATCT-TTCTGGGTC-TCCTTTAAGGTAGGAAATGACATTTTCAAAAATAAATC
63 AAAAACTTTT-CATATATTCTCAGACTTCCATAAAGGTACAAAATGAAATTTTCAAAAATAAATC
4127935 AAAATAAAATTAAAT
127 AAAATAAAATTAAAT
4127950 AAATCAAATA
Statistics
Matches: 118, Mismatches: 20, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
162 11 0.09
163 4 0.03
164 62 0.53
165 37 0.31
166 4 0.03
ACGTcount: A:0.38, C:0.12, G:0.10, T:0.39
Consensus pattern (163 bp):
AATTTTAATCATTTTTAATCTTTTATATTCCCATAAGCATCCGTAGAGGTATAAAAAATTTCAAA
AACTTTTCATATATTCTCAGACTTCCATAAAGGTACAAAATGAAATTTTCAAAAATAAATCAAAA
TAAAATTAAATTTACACTTTTGTAATTGAGATC
Found at i:4127963 original size:20 final size:20
Alignment explanation
Indices: 4127926--4127962 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
4127916 ACATTTTCAA
4127926 AAATAAATCAAAATAAAATT
1 AAATAAATCAAAATAAAATT
4127946 AAATAAATC-AAATAAAA
1 AAATAAATCAAAATAAAA
4127963 AAAATGAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.73, C:0.05, G:0.00, T:0.22
Consensus pattern (20 bp):
AAATAAATCAAAATAAAATT
Found at i:4131113 original size:28 final size:29
Alignment explanation
Indices: 4131079--4131142 Score: 80
Period size: 28 Copynumber: 2.3 Consensus size: 29
4131069 TTCTTCTTTA
*
4131079 TTGATTTCT-TTTCCTTTGAAATTTCTTG
1 TTGATTTCTGTTTCCTTTCAAATTTCTTG
*
4131107 CTT-ATTT-TGTTTCCTTTCATATTTCTTG
1 -TTGATTTCTGTTTCCTTTCAAATTTCTTG
4131135 TTGATTTC
1 TTGATTTC
4131143 ACTTCCTTGA
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
27 3 0.10
28 25 0.83
29 2 0.07
ACGTcount: A:0.12, C:0.16, G:0.09, T:0.62
Consensus pattern (29 bp):
TTGATTTCTGTTTCCTTTCAAATTTCTTG
Found at i:4134056 original size:79 final size:79
Alignment explanation
Indices: 4133965--4134214 Score: 324
Period size: 79 Copynumber: 3.2 Consensus size: 79
4133955 ATAAAAACAA
* * * *
4133965 GGTTGGAGTATCCCCTCAGAAATAACGGGGTTGGAGTATCCCCGATGGTGGAAAATCGATGTTTT
1 GGTTAGAGTATCCCCTCAAAAATAATGGGGTTGGAGTATCCCCGATTGTGGAAAATCGATGTTTT
*
4134030 CGAAATAAAACTGG
66 AGAAATAAAACTGG
* * *
4134044 GGTTAGAGTATCCCTTCAAAAATAATGGGGTTGGAGTATCCCCGATTATGGAAAATTGATGTTTT
1 GGTTAGAGTATCCCCTCAAAAATAATGGGGTTGGAGTATCCCCGATTGTGGAAAATCGATGTTTT
*
4134109 AGAAATAAAGCTGG
66 AGAAATAAAACTGG
* * * *
4134123 CGTT-GAAGTATCCCCTGAAAAATAATGGGGTTGGAGTATCCCCAATTGTGGAAAATCGGTGTTT
1 GGTTAG-AGTATCCCCTCAAAAATAATGGGGTTGGAGTATCCCCGATTGTGGAAAATCGATGTTT
* *
4134187 TGGAAATAAAA-TCAG
65 TAGAAATAAAACT-GG
*
4134202 GTTTAGAGTATCC
1 GGTTAGAGTATCC
4134215 TTAATTGTGA
Statistics
Matches: 147, Mismatches: 21, Indels: 6
0.84 0.12 0.03
Matches are distributed among these distances:
78 2 0.01
79 144 0.98
80 1 0.01
ACGTcount: A:0.31, C:0.14, G:0.26, T:0.28
Consensus pattern (79 bp):
GGTTAGAGTATCCCCTCAAAAATAATGGGGTTGGAGTATCCCCGATTGTGGAAAATCGATGTTTT
AGAAATAAAACTGG
Found at i:4134221 original size:51 final size:51
Alignment explanation
Indices: 4134151--4134369 Score: 305
Period size: 51 Copynumber: 4.3 Consensus size: 51
4134141 AAAATAATGG
* * *
4134151 GGTTGGAGTATCCCCAATTGTGGAAAATCGGTGTTTTGGAAATAAAATC-A
1 GGTTGGAGTATCCCCAATTGTGAAAAATCGATGTTTTGGAAATAAAACCAA
* ** * *
4134201 GGTTTAGAGTATCCTTAATTGTGAAAAATCGATGTTTTGAAAATAAAACCGA
1 GG-TTGGAGTATCCCCAATTGTGAAAAATCGATGTTTTGGAAATAAAACCAA
* * *
4134253 GGTTGGAGTATCCCCAATTGTGAAAAATCAATGTTTTGGAAATAAAATCAG
1 GGTTGGAGTATCCCCAATTGTGAAAAATCGATGTTTTGGAAATAAAACCAA
* *
4134304 GGTTGGAGTATCCTCGATTGTGAAAAATCGATGTTTTGGAAATAAAACCAA
1 GGTTGGAGTATCCCCAATTGTGAAAAATCGATGTTTTGGAAATAAAACCAA
4134355 GGTTGGAGTATCCCC
1 GGTTGGAGTATCCCC
4134370 TTGGAAATAA
Statistics
Matches: 146, Mismatches: 21, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
50 2 0.01
51 141 0.97
52 3 0.02
ACGTcount: A:0.34, C:0.12, G:0.23, T:0.30
Consensus pattern (51 bp):
GGTTGGAGTATCCCCAATTGTGAAAAATCGATGTTTTGGAAATAAAACCAA
Found at i:4134264 original size:102 final size:102
Alignment explanation
Indices: 4134151--4134369 Score: 357
Period size: 102 Copynumber: 2.1 Consensus size: 102
4134141 AAAATAATGG
* ** *
4134151 GGTTGGAGTATCCCCAATTGTGGAAAATCGGTGTTTTGGAAATAAAATCAGGTTTAGAGTATCCT
1 GGTTGGAGTATCCCCAATTGTGAAAAATCAATGTTTTGGAAATAAAATCAGGGTTAGAGTATCCT
* *
4134216 TAATTGTGAAAAATCGATGTTTTGAAAATAAAACCGA
66 CAATTGTGAAAAATCGATGTTTTGAAAATAAAACCAA
*
4134253 GGTTGGAGTATCCCCAATTGTGAAAAATCAATGTTTTGGAAATAAAATCAGGGTTGGAGTATCCT
1 GGTTGGAGTATCCCCAATTGTGAAAAATCAATGTTTTGGAAATAAAATCAGGGTTAGAGTATCCT
* *
4134318 CGATTGTGAAAAATCGATGTTTTGGAAATAAAACCAA
66 CAATTGTGAAAAATCGATGTTTTGAAAATAAAACCAA
4134355 GGTTGGAGTATCCCC
1 GGTTGGAGTATCCCC
4134370 TTGGAAATAA
Statistics
Matches: 108, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
102 108 1.00
ACGTcount: A:0.34, C:0.12, G:0.23, T:0.30
Consensus pattern (102 bp):
GGTTGGAGTATCCCCAATTGTGAAAAATCAATGTTTTGGAAATAAAATCAGGGTTAGAGTATCCT
CAATTGTGAAAAATCGATGTTTTGAAAATAAAACCAA
Found at i:4134374 original size:31 final size:30
Alignment explanation
Indices: 4134339--4134423 Score: 106
Period size: 28 Copynumber: 2.9 Consensus size: 30
4134329 AATCGATGTT
4134339 TTGGAAATAAAACCAAGGTTGGAGTATCCCC
1 TTGGAAATAAAA-CAAGGTTGGAGTATCCCC
*
4134370 TTGGAAAT--AACAGGGTTGGAGTATCCCC
1 TTGGAAATAAAACAAGGTTGGAGTATCCCC
**
4134398 TTGGAAAT--AACGGGGTTGGAGTATCC
1 TTGGAAATAAAACAAGGTTGGAGTATCC
4134424 TCGATTGTGA
Statistics
Matches: 52, Mismatches: 2, Indels: 3
0.91 0.04 0.05
Matches are distributed among these distances:
28 42 0.81
29 2 0.04
31 8 0.15
ACGTcount: A:0.31, C:0.16, G:0.28, T:0.25
Consensus pattern (30 bp):
TTGGAAATAAAACAAGGTTGGAGTATCCCC
Found at i:4134392 original size:28 final size:28
Alignment explanation
Indices: 4134355--4134423 Score: 129
Period size: 28 Copynumber: 2.5 Consensus size: 28
4134345 ATAAAACCAA
4134355 GGTTGGAGTATCCCCTTGGAAATAACAG
1 GGTTGGAGTATCCCCTTGGAAATAACAG
*
4134383 GGTTGGAGTATCCCCTTGGAAATAACGG
1 GGTTGGAGTATCCCCTTGGAAATAACAG
4134411 GGTTGGAGTATCC
1 GGTTGGAGTATCC
4134424 TCGATTGTGA
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
28 40 1.00
ACGTcount: A:0.25, C:0.17, G:0.32, T:0.26
Consensus pattern (28 bp):
GGTTGGAGTATCCCCTTGGAAATAACAG
Found at i:4134443 original size:107 final size:107
Alignment explanation
Indices: 4134303--4134503 Score: 348
Period size: 107 Copynumber: 1.9 Consensus size: 107
4134293 AATAAAATCA
4134303 GGGTTGGAGTATCCTCGATTGTGAAAAATCGATGTTTTGGAAATAAAACCAAGGTTGGAGTATCC
1 GGGTTGGAGTATCCTCGATTGTGAAAAATCGATGTTTTGGAAATAAAACCAAGGTTGGAGTATCC
* *
4134368 CCTTGGAAATAACAGGGTTGGAGTATCCCCTTGGAAATAACG
66 CCGTGAAAATAACAGGGTTGGAGTATCCCCTTGGAAATAACG
* *
4134410 GGGTTGGAGTATCCTCGATTGTGAAAAATCGATGTTTTGGAAATAAAACTAGGGTTGGAGTATCC
1 GGGTTGGAGTATCCTCGATTGTGAAAAATCGATGTTTTGGAAATAAAACCAAGGTTGGAGTATCC
**
4134475 CCGTGAAAATAATGGGGTTGGAGTATCCC
66 CCGTGAAAATAACAGGGTTGGAGTATCCC
4134504 TCGATTGTGA
Statistics
Matches: 88, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
107 88 1.00
ACGTcount: A:0.30, C:0.14, G:0.28, T:0.28
Consensus pattern (107 bp):
GGGTTGGAGTATCCTCGATTGTGAAAAATCGATGTTTTGGAAATAAAACCAAGGTTGGAGTATCC
CCGTGAAAATAACAGGGTTGGAGTATCCCCTTGGAAATAACG
Found at i:4134464 original size:79 final size:78
Alignment explanation
Indices: 4134370--4134582 Score: 313
Period size: 80 Copynumber: 2.7 Consensus size: 78
4134360 GAGTATCCCC
4134370 TTGGAAAT--AACAGGGTTGGAGTATCCCCTTGGAAATAACGGGGTTGGAGTATCCTCGATTGTG
1 TTGGAAATAAAACAGGGTTGGAGTATCCCCTTGGAAATAACGGGGTTGGAGTATCCTCGATTGTG
4134433 AAAAATCGATGTT
66 AAAAATCGATGTT
* * *
4134446 TTGGAAATAAAACTAGGGTTGGAGTATCCCCGTGAAAATAATGGGGTTGGAGTATCCCTCGATTG
1 TTGGAAATAAAAC-AGGGTTGGAGTATCCCCTTGGAAATAACGGGGTTGGAGTAT-CCTCGATTG
4134511 TGAAAAATCGATGTT
64 TGAAAAATCGATGTT
* * * * *
4134526 TTGGAAATAAAACCGGGGTTGAAGTATCCCCTTAGAAATAACGAGGTCGGAGTATCC
1 TTGGAAATAAAA-CAGGGTTGGAGTATCCCCTTGGAAATAACGGGGTTGGAGTATCC
4134583 CCTTGGAAAT
Statistics
Matches: 121, Mismatches: 11, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
76 8 0.07
78 3 0.02
79 40 0.33
80 69 0.57
81 1 0.01
ACGTcount: A:0.31, C:0.14, G:0.28, T:0.27
Consensus pattern (78 bp):
TTGGAAATAAAACAGGGTTGGAGTATCCCCTTGGAAATAACGGGGTTGGAGTATCCTCGATTGTG
AAAAATCGATGTT
Found at i:4134522 original size:187 final size:186
Alignment explanation
Indices: 4134303--4134662 Score: 614
Period size: 187 Copynumber: 1.9 Consensus size: 186
4134293 AATAAAATCA
*
4134303 GGGTTGGAGTATCCTCGATTGTGAAAAATCGATGTTTTGGAAATAAAACCAAGGTTGGAGTATCC
1 GGGTTGGAGTATCCTCGATTGTGAAAAATCGATGTTTTGGAAATAAAACCAAGGTTGAAGTATCC
* *
4134368 CCTTGGAAATAAC-AGGGTTGGAGTATCCCCTTGGAAATAACGGGGTTGGAGTATCCTCGATTGT
66 CCTTAGAAATAACGA-GGTCGGAGTATCCCCTTGGAAATAACGGGGTTGGAGTATCCTCGATTGT
* *
4134432 GAAAAATCGATGTTTTGGAAATAAAACTAGGGTTGGAGTATCCCCGTGAAAATAATG
130 GAAAAATCGATGTTTTGAAAATAAAACCAGGGTTGGAGTATCCCCGTGAAAATAATG
**
4134489 GGGTTGGAGTATCCCTCGATTGTGAAAAATCGATGTTTTGGAAATAAAACCGGGGTTGAAGTATC
1 GGGTTGGAGTAT-CCTCGATTGTGAAAAATCGATGTTTTGGAAATAAAACCAAGGTTGAAGTATC
4134554 CCCTTAGAAATAACGAGGTCGGAGTATCCCCTTGGAAATAACGGGGTTGGAGTATCCTCGATTGT
65 CCCTTAGAAATAACGAGGTCGGAGTATCCCCTTGGAAATAACGGGGTTGGAGTATCCTCGATTGT
* *
4134619 GAAAAATTGATGTTTTGAAAATAAAACCGGGGTTGGAGTATCCC
130 GAAAAATCGATGTTTTGAAAATAAAACCAGGGTTGGAGTATCCC
4134663 TGATTATGGA
Statistics
Matches: 163, Mismatches: 9, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
186 12 0.07
187 150 0.92
188 1 0.01
ACGTcount: A:0.31, C:0.14, G:0.28, T:0.28
Consensus pattern (186 bp):
GGGTTGGAGTATCCTCGATTGTGAAAAATCGATGTTTTGGAAATAAAACCAAGGTTGAAGTATCC
CCTTAGAAATAACGAGGTCGGAGTATCCCCTTGGAAATAACGGGGTTGGAGTATCCTCGATTGTG
AAAAATCGATGTTTTGAAAATAAAACCAGGGTTGGAGTATCCCCGTGAAAATAATG
Found at i:4134582 original size:28 final size:28
Alignment explanation
Indices: 4134548--4134610 Score: 99
Period size: 28 Copynumber: 2.2 Consensus size: 28
4134538 CCGGGGTTGA
4134548 AGTATCCCCTTAGAAATAACGAGGTCGG
1 AGTATCCCCTTAGAAATAACGAGGTCGG
* * *
4134576 AGTATCCCCTTGGAAATAACGGGGTTGG
1 AGTATCCCCTTAGAAATAACGAGGTCGG
4134604 AGTATCC
1 AGTATCC
4134611 TCGATTGTGA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.29, C:0.21, G:0.27, T:0.24
Consensus pattern (28 bp):
AGTATCCCCTTAGAAATAACGAGGTCGG
Found at i:4134653 original size:107 final size:108
Alignment explanation
Indices: 4134466--4134662 Score: 333
Period size: 107 Copynumber: 1.8 Consensus size: 108
4134456 AACTAGGGTT
* *
4134466 GGAGTATCCCCGTGAAAATAATGGGGTTGGAGTATCCCTCGATTGTGAAAAATCGATGTTTTGGA
1 GGAGTATCCCCGTGAAAATAACGGGGTTGGAGTATCCCTCGATTGTGAAAAATCGATGTTTTGAA
4134531 AATAAAACCGGGGTTGAAGTATCCCCTTAGAAATAACGAGGTC
66 AATAAAACCGGGGTTGAAGTATCCCCTTAGAAATAACGAGGTC
* * *
4134574 GGAGTATCCCCTTGGAAATAACGGGGTTGGAGTAT-CCTCGATTGTGAAAAATTGATGTTTTGAA
1 GGAGTATCCCCGTGAAAATAACGGGGTTGGAGTATCCCTCGATTGTGAAAAATCGATGTTTTGAA
*
4134638 AATAAAACCGGGGTTGGAGTATCCC
66 AATAAAACCGGGGTTGAAGTATCCC
4134663 TGATTATGGA
Statistics
Matches: 83, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
107 51 0.61
108 32 0.39
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.27
Consensus pattern (108 bp):
GGAGTATCCCCGTGAAAATAACGGGGTTGGAGTATCCCTCGATTGTGAAAAATCGATGTTTTGAA
AATAAAACCGGGGTTGAAGTATCCCCTTAGAAATAACGAGGTC
Found at i:4134658 original size:51 final size:52
Alignment explanation
Indices: 4134595--4134713 Score: 170
Period size: 51 Copynumber: 2.3 Consensus size: 52
4134585 TTGGAAATAA
* *
4134595 CGGGGTTGGAGTATCCTC-GATTGTGAAAAATTGATGTTTTGAAAATAAAAC
1 CGGGGTTGGAGTATCCTCTGATTATGAAAAATTAATGTTTTGAAAATAAAAC
*
4134646 CGGGGTTGGAGTATCC-CTGATTATGGAAAATTAATGTTTTGAAAATAAAAC
1 CGGGGTTGGAGTATCCTCTGATTATGAAAAATTAATGTTTTGAAAATAAAAC
** *
4134697 CGAAGTTGAAGTATCCT
1 CGGGGTTGGAGTATCCT
4134714 TTCAAAAATA
Statistics
Matches: 60, Mismatches: 6, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
50 1 0.02
51 59 0.98
ACGTcount: A:0.34, C:0.11, G:0.24, T:0.31
Consensus pattern (52 bp):
CGGGGTTGGAGTATCCTCTGATTATGAAAAATTAATGTTTTGAAAATAAAAC
Found at i:4137179 original size:76 final size:77
Alignment explanation
Indices: 4137062--4137240 Score: 218
Period size: 76 Copynumber: 2.3 Consensus size: 77
4137052 AAAGGAAGGG
* * *
4137062 GCGTCCTGCTCTTTGAGGACAAAAGAAAAGGAGCACGTCCTGCTATTCGAGGACAAAGGAAAA-A
1 GCGTCCTCCTCTTTGAGGACAAAAGAAAAGGAGCACATCCTGCTATTCAAGGACAAAGGAAAATA
*
4137126 AGGAAATAAAAT
66 AGGAAATAAAAC
* * * * * *
4137138 GCGTCCTCCTCTTTGAGGACAAAGGAAAATGAGTACATCCTGCTCTTTAAGGACAAAGGAAAATG
1 GCGTCCTCCTCTTTGAGGACAAAAGAAAAGGAGCACATCCTGCTATTCAAGGACAAAGGAAAATA
*
4137203 AGGAAATTAAAC
66 AGGAAATAAAAC
*
4137215 GCATCC-CACTCTTTGAGGACTAAAAG
1 GCGTCCTC-CTCTTTGAGGAC-AAAAG
4137241 GTGCTGCCAA
Statistics
Matches: 87, Mismatches: 13, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
76 56 0.64
77 27 0.31
78 4 0.05
ACGTcount: A:0.38, C:0.19, G:0.23, T:0.20
Consensus pattern (77 bp):
GCGTCCTCCTCTTTGAGGACAAAAGAAAAGGAGCACATCCTGCTATTCAAGGACAAAGGAAAATA
AGGAAATAAAAC
Found at i:4137378 original size:61 final size:61
Alignment explanation
Indices: 4137285--4137953 Score: 792
Period size: 61 Copynumber: 10.9 Consensus size: 61
4137275 AGGAAAGTGC
* * * **
4137285 CCTGCTCTTTGGGGACTAGAATGTGCCACCAACTTGTGTGGGCTTTGCAAGGAGAAA-GCGT
1 CCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGA-AAAGGCGT
* ** ** *
4137346 CCTCCT-TTTAGAGGACTGGAAGGTGCTGCCAACTTGTGTGGGCTTTAAAAGGAAAAGGCAT
1 CCTGCTCTTT-GAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGT
* *
4137407 CCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTATGTGGGCTTT-AAAGGAAAAAGGAAAGTG
1 CCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGG-AAAA-G---GCG
4137471 T
61 T
* * * * **
4137472 CCTGCTCTTTGGGGACTAAAAGATGCCACCAACTTATGTGGGTTTTGCAAGGAGAAA-GCGT
1 CCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGA-AAAGGCGT
* * * **
4137533 CCTGCTCTTTGGGGACTAAAAAGTGCCACCAACTTGTGTGGGTTTTGCAAGGAGAAA-GCGT
1 CCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGA-AAAGGCGT
* ** *
4137594 CTTGCTCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCAT
1 CCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGT
* *
4137655 CCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGTGT
1 CCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGT
* * * * * *
4137716 CATGCTCATTGAGGACTAAGAGGTGCCACCAACTTGTGTGGGTTTTAAAAAGAAAAGGCAT
1 CCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGT
* * * *
4137777 CCTGCTCTTTGAAGACTAAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAACGGCGG
1 CCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGT
* * * * *
4137838 CCTACTCTTTGAGGACTAGAAGGTGCCATCAACTTGTGTGGGTTTTGAAAGGAAAAGGCGT
1 CCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGT
*
4137899 CCTGCTCTTTGAGGACTAAAAGGTGCCACCAACCTT-TGTGGGCTTTGAAAGGAAA
1 CCTGCTCTTTGAGGACTAAAAGGTGCCACCAA-CTTGTGTGGGCTTTAAAAGGAAA
4137954 GTATCCTACT
Statistics
Matches: 527, Mismatches: 69, Indels: 24
0.85 0.11 0.04
Matches are distributed among these distances:
60 14 0.03
61 453 0.86
62 7 0.01
65 46 0.09
66 7 0.01
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.26
Consensus pattern (61 bp):
CCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGT
Found at i:4137761 original size:183 final size:186
Alignment explanation
Indices: 4137223--4137980 Score: 871
Period size: 183 Copynumber: 4.1 Consensus size: 186
4137213 ACGCATCCCA
** * * *
4137223 CTCTTTGAGGACTAAAAGGTGCTGCCAACTTGTGTAGGATTTAAGAGGAAAAAGGAAAGTGCCCT
1 CTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAAGGAAAGT--CCT
* * * *
4137288 GCTCTTTGGGGACTAGAATGTGCCACCAACTTGTGTGGGCTTTGCAAGGAGAAAGCGTCCTCCT-
64 GCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGAGAAAGCGTCCTGCTC
** **
4137352 TTTAGAGGACTGGAAGGTGCTGCCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCCTG
129 TTT-GAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCCTG
*
4137411 CTCTTTGAGGACTAAAAGGTGCCACCAACTTATGTGGGCTTT-AAAGGAAAAAGGAAAGTGTCCT
1 CTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAAGGAAA--GTCCT
* * * * * *
4137475 GCTCTTTGGGGACTAAAAGATGCCACCAACTTATGTGGGTTTTGCAAGGAGAAAGCGTCCTGCTC
64 GCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGAGAAAGCGTCCTGCTC
* * * ** * *
4137540 TTTGGGGACTAAAAAGTGCCACCAACTTGTGTGGGTTTTGCAAGGAGAAA-GCGTCTTG
129 TTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGA-AAAGGCATCCTG
** *
4137598 CTCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGG-AAAAGG-CA-TCCTGC
1 CTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAAGGAAAGTCCTGC
* * *
4137660 TCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGA-AAAGGTGTCATGCTC
66 TCTTTGAGGACTAG-AAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGAGAAA-GCGTCCTGCTC
* * * *
4137723 ATTGAGGACTAAGAGGTGCCACCAACTTGTGTGGGTTTTAAAAAGAAAAGGCATCCTG
129 TTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCCTG
* * * * * *
4137781 CTCTTTGAAGACTAAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGG-AAACGG--CGGCCTAC
1 CTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAAGGAAAGTCCTGC
* *
4137843 TCTTTGAGGACTAGAAGGTGCCATCAACTTGTGTGGGTTTTGAAAGGA-AAAGGCGTCCTGCTCT
66 TCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGAGAAA-GCGTCCTGCTCT
* * *
4137907 TTGAGGACTAAAAGGTGCCACCAACCTT-TGTGGGCTTTGAAAGG-AAA-GTATCCTA
130 TTGAGGACTAAAAGGTGCCACCAA-CTTGTGTGGGCTTTAAAAGGAAAAGGCATCCTG
* *
4137962 CTCTTTAAGGACTGAAAGG
1 CTCTTTGAGGACTAAAAGG
4137981 ATAAAAGGTT
Statistics
Matches: 490, Mismatches: 69, Indels: 29
0.83 0.12 0.05
Matches are distributed among these distances:
181 21 0.04
182 9 0.02
183 245 0.50
184 4 0.01
186 1 0.00
187 160 0.33
188 48 0.10
189 2 0.00
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (186 bp):
CTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAAGGAAAGTCCTGC
TCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGAGAAAGCGTCCTGCTCTT
TGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCCTG
Found at i:4138952 original size:20 final size:20
Alignment explanation
Indices: 4138929--4138977 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
4138919 CTTAGACAGG
*
4138929 TTCTTTTTTTTCT-TTTTTCT
1 TTCTTTTTTTTCTGTTGTT-T
*
4138949 TTCTTTTTTTTGTGTTGTTT
1 TTCTTTTTTTTCTGTTGTTT
4138969 TTCTTTTTT
1 TTCTTTTTT
4138978 GGAAAAAAGG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
20 22 0.85
21 4 0.15
ACGTcount: A:0.00, C:0.10, G:0.06, T:0.84
Consensus pattern (20 bp):
TTCTTTTTTTTCTGTTGTTT
Found at i:4149248 original size:4 final size:4
Alignment explanation
Indices: 4149239--4149284 Score: 76
Period size: 4 Copynumber: 11.5 Consensus size: 4
4149229 AAACAAAACA
4149239 AAAT AAAT AAAT AAAT AAAT AAA- AGAAT AAAT AAAT AAAT AAAT AA
1 AAAT AAAT AAAT AAAT AAAT AAAT A-AAT AAAT AAAT AAAT AAAT AA
4149285 GCACCACTTT
Statistics
Matches: 40, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
3 1 0.03
4 38 0.95
5 1 0.03
ACGTcount: A:0.76, C:0.00, G:0.02, T:0.22
Consensus pattern (4 bp):
AAAT
Found at i:4151389 original size:28 final size:28
Alignment explanation
Indices: 4151351--4151421 Score: 106
Period size: 28 Copynumber: 2.5 Consensus size: 28
4151341 ATAAAAATGA
* **
4151351 GGTTGGGGTATCCCCTTGAAAATGATGG
1 GGTTGGAGTATCCCCTCAAAAATGATGG
4151379 GGTTGGAGTATCCCCTCAAAAATGATGG
1 GGTTGGAGTATCCCCTCAAAAATGATGG
*
4151407 GGTTGGAGCATCCCC
1 GGTTGGAGTATCCCC
4151422 AATGGTGAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.23, C:0.20, G:0.32, T:0.25
Consensus pattern (28 bp):
GGTTGGAGTATCCCCTCAAAAATGATGG
Found at i:4151465 original size:79 final size:79
Alignment explanation
Indices: 4151377--4151628 Score: 308
Period size: 79 Copynumber: 3.2 Consensus size: 79
4151367 TGAAAATGAT
* * ** * * * *
4151377 GGGGTTGGAGTATCCCCTCAAAAATGATGGGGTTGGAGCATCCCCAATGGTGAAAAATCGATGTT
1 GGGGTTGGAGTATCCCCTCGAAAATAACAGGGTTGGAGTATCCCCGATTGTGGAAAATCGATGTT
4151442 TTGGAAATAAAATC
66 TTGGAAATAAAATC
* * *
4151456 GGGGTTGGAGTATCCCCTCGAAAATAACAGGGTTGGAGTATCCCTGATTATGGAAAATTGATGTT
1 GGGGTTGGAGTATCCCCTCGAAAATAACAGGGTTGGAGTATCCCCGATTGTGGAAAATCGATGTT
* *
4151521 TTAGAAAT-AAAGC
66 TTGGAAATAAAATC
* * * * *
4151534 TAGGGTTGGAGTATCCCTTTGAAAATAACAGGGTTGGAGTATCCTCGATTGTGGAAAATCGGTGT
1 -GGGGTTGGAGTATCCCCTCGAAAATAACAGGGTTGGAGTATCCCCGATTGTGGAAAATCGATGT
4151599 TTTGGAAATAAAATC
65 TTTGGAAATAAAATC
* *
4151614 GAGGTTAGAGTATCC
1 GGGGTTGGAGTATCC
4151629 TTGATTGTGA
Statistics
Matches: 145, Mismatches: 26, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
78 4 0.03
79 137 0.94
80 4 0.03
ACGTcount: A:0.31, C:0.13, G:0.28, T:0.28
Consensus pattern (79 bp):
GGGGTTGGAGTATCCCCTCGAAAATAACAGGGTTGGAGTATCCCCGATTGTGGAAAATCGATGTT
TTGGAAATAAAATC
Found at i:4151629 original size:51 final size:51
Alignment explanation
Indices: 4151565--4151730 Score: 235
Period size: 51 Copynumber: 3.3 Consensus size: 51
4151555 AAAATAACAG
* * *
4151565 GGTTGGAGTATCCTCGATTGTGGAAAATCGGTGTTTTGGAAATAAAATCGA
1 GGTTAGAGTATCCTCGATTGTGAAAAATCGGTGTTTTGGAAATAAAACCGA
* * *
4151616 GGTTAGAGTATCCTTGATTGTGAAAAATCGATGTCTTGGAAATAAAACCGA
1 GGTTAGAGTATCCTCGATTGTGAAAAATCGGTGTTTTGGAAATAAAACCGA
* *
4151667 GGTTAGAGTAT-CTCTGATTGTGAAAAATCAGTGTTTTGGAAATAAAACCGT
1 GGTTAGAGTATCCTC-GATTGTGAAAAATCGGTGTTTTGGAAATAAAACCGA
*
4151718 GGTTGGAGTATCC
1 GGTTAGAGTATCC
4151731 CTTTGGAAAT
Statistics
Matches: 101, Mismatches: 12, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
50 2 0.02
51 98 0.97
52 1 0.01
ACGTcount: A:0.31, C:0.11, G:0.27, T:0.31
Consensus pattern (51 bp):
GGTTAGAGTATCCTCGATTGTGAAAAATCGGTGTTTTGGAAATAAAACCGA
Found at i:4151810 original size:51 final size:51
Alignment explanation
Indices: 4151743--4151862 Score: 161
Period size: 51 Copynumber: 2.4 Consensus size: 51
4151733 TTGGAAATAA
* *
4151743 CGGGGTTGGAGTATCCCCGATTGTGAAAACT-TGATGTTTCGAAAATAAAAC
1 CGGGGTTGGAGTATCCCCGATTGTGAAAAATCAG-TGTTTCGAAAATAAAAC
* *
4151794 CGGGGTTGGAGTATCCCCGATTGTGAAAAATCAGTGTTTTGGAAATAAAAC
1 CGGGGTTGGAGTATCCCCGATTGTGAAAAATCAGTGTTTCGAAAATAAAAC
* * *
4151845 CAGGGATAGAGTATCCCC
1 CGGGGTTGGAGTATCCCC
4151863 TCAAAAATAA
Statistics
Matches: 61, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
51 60 0.98
52 1 0.02
ACGTcount: A:0.31, C:0.17, G:0.27, T:0.26
Consensus pattern (51 bp):
CGGGGTTGGAGTATCCCCGATTGTGAAAAATCAGTGTTTCGAAAATAAAAC
Found at i:4151857 original size:130 final size:130
Alignment explanation
Indices: 4151616--4151861 Score: 352
Period size: 130 Copynumber: 1.9 Consensus size: 130
4151606 ATAAAATCGA
** * *
4151616 GGTTAGAGTATCCTTGATTGTGAAAAATCGATGTCTTGGAAATAAAACCGAGGTTAGAGTATCTC
1 GGTTAGAGTATCCCCGATTGTGAAAAATCGATGTCTTGAAAATAAAACCGAGGTTAGAGTATCCC
* * *
4151681 TGATTGTGAAAAATCAGTGTTTTGGAAATAAAACCGTGGTTGGAGTATCCCTTTGGAAATAACGG
66 CGATTGTGAAAAATCAGTGTTTTGGAAATAAAACCGTGGATAGAGTATCCCTTTGGAAATAACGG
* * * * *
4151746 GGTTGGAGTATCCCCGATTGTGAAAACTTGATGT-TTCGAAAATAAAACCGGGGTTGGAGTATCC
1 GGTTAGAGTATCCCCGATTGTGAAAAATCGATGTCTT-GAAAATAAAACCGAGGTTAGAGTATCC
4151810 CCGATTGTGAAAAATCAGTGTTTTGGAAATAAAACCAG-GGATAGAGTATCCC
65 CCGATTGTGAAAAATCAGTGTTTTGGAAATAAAACC-GTGGATAGAGTATCCC
4151862 CTCAAAAATA
Statistics
Matches: 102, Mismatches: 12, Indels: 4
0.86 0.10 0.03
Matches are distributed among these distances:
129 2 0.02
130 99 0.97
131 1 0.01
ACGTcount: A:0.32, C:0.13, G:0.26, T:0.29
Consensus pattern (130 bp):
GGTTAGAGTATCCCCGATTGTGAAAAATCGATGTCTTGAAAATAAAACCGAGGTTAGAGTATCCC
CGATTGTGAAAAATCAGTGTTTTGGAAATAAAACCGTGGATAGAGTATCCCTTTGGAAATAACGG
Found at i:4151871 original size:130 final size:131
Alignment explanation
Indices: 4151610--4151887 Score: 348
Period size: 130 Copynumber: 2.1 Consensus size: 131
4151600 TTGGAAATAA
* ** *
4151610 AATCGAGGTTAGAGTATCCTTGATTGTGAAAAATCGATGTCTTGGAAATAAAACCGAGGTTAGAG
1 AATCGGGGTTAGAGTATCCCCGATTGTGAAAAATCGATGTCTTGAAAATAAAACCGAGGTTAGAG
* * * * * ***
4151675 TATCTCTGATTGTGAAAAATCAGTGTTTTGGAAATAAAACCGTGGTTGGAGTATCCCTTTGGAAA
66 TATCCCCGATTGTGAAAAATCAGTGTTTTGGAAATAAAACCGTGGATAGAGTATCCCCTCAAAAA
4151740 T
131 T
* * * * *
4151741 AA-CGGGGTTGGAGTATCCCCGATTGTGAAAACTTGATGT-TTCGAAAATAAAACCGGGGTTGGA
1 AATCGGGGTTAGAGTATCCCCGATTGTGAAAAATCGATGTCTT-GAAAATAAAACCGAGGTTAGA
4151804 GTATCCCCGATTGTGAAAAATCAGTGTTTTGGAAATAAAACCAG-GGATAGAGTATCCCCTCAAA
65 GTATCCCCGATTGTGAAAAATCAGTGTTTTGGAAATAAAACC-GTGGATAGAGTATCCCCTCAAA
4151868 AAT
129 AAT
*
4151871 AATC-GGGTCAGAGTATC
1 AATCGGGGTTAGAGTATC
4151888 TCTTTAGAAA
Statistics
Matches: 125, Mismatches: 19, Indels: 7
0.83 0.13 0.05
Matches are distributed among these distances:
129 2 0.02
130 119 0.95
131 4 0.03
ACGTcount: A:0.33, C:0.14, G:0.25, T:0.28
Consensus pattern (131 bp):
AATCGGGGTTAGAGTATCCCCGATTGTGAAAAATCGATGTCTTGAAAATAAAACCGAGGTTAGAG
TATCCCCGATTGTGAAAAATCAGTGTTTTGGAAATAAAACCGTGGATAGAGTATCCCCTCAAAAA
T
Found at i:4151961 original size:51 final size:51
Alignment explanation
Indices: 4151903--4152019 Score: 153
Period size: 51 Copynumber: 2.3 Consensus size: 51
4151893 AGAAATAACA
* ** * *
4151903 GGGTTGGAGTATCCTCAATTATGAAAAATCGATGTTTTGGAAATAAAATCG
1 GGGTTGGAGTATCCCCAATTATGAAAAATAAATGTTTTGGAAAGAAAACCG
* *
4151954 GGGTTGGAGTATCCCCGATTATGGAAAATAAATGTTTTGGAAAGAAAACCG
1 GGGTTGGAGTATCCCCAATTATGAAAAATAAATGTTTTGGAAAGAAAACCG
**
4152005 GGGTTAAAGTATCCC
1 GGGTTGGAGTATCCC
4152020 TTCAAAAATA
Statistics
Matches: 57, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
51 57 1.00
ACGTcount: A:0.34, C:0.12, G:0.26, T:0.28
Consensus pattern (51 bp):
GGGTTGGAGTATCCCCAATTATGAAAAATAAATGTTTTGGAAAGAAAACCG
Found at i:4152016 original size:158 final size:158
Alignment explanation
Indices: 4151723--4152030 Score: 436
Period size: 158 Copynumber: 1.9 Consensus size: 158
4151713 ACCGTGGTTG
* * * * * *
4151723 GAGTATCCCTTTGGAAATAACGGGGTTGGAGTATCCCCGATTGTGAAAACTTGATGTTTCGAAAA
1 GAGTATCCCTTTAGAAATAACAGGGTTGGAGTATCCCCAATTATGAAAAATCGATGTTTCGAAAA
* * * *
4151788 TAAAACCGGGGTTGGAGTATCCCCGATTGTGAAAAATCAGTGTTTTGGAAATAAAACCAGGGATA
66 TAAAACCGGGGTTGGAGTATCCCCGATTATGAAAAATAAATGTTTTGGAAAGAAAACCAGGGATA
*
4151853 GAGTATCCCCTCAAAAATAATCGGGTCA
131 AAGTATCCCCTCAAAAATAATCGGGTCA
* * * *
4151881 GAGTATCTCTTTAGAAATAACAGGGTTGGAGTATCCTCAATTATGAAAAATCGATGTTTTGGAAA
1 GAGTATCCCTTTAGAAATAACAGGGTTGGAGTATCCCCAATTATGAAAAATCGATGTTTCGAAAA
* * * *
4151946 TAAAATCGGGGTTGGAGTATCCCCGATTATGGAAAATAAATGTTTTGGAAAGAAAACCGGGGTTA
66 TAAAACCGGGGTTGGAGTATCCCCGATTATGAAAAATAAATGTTTTGGAAAGAAAACCAGGGATA
*
4152011 AAGTATCCCTTCAAAAATAA
131 AAGTATCCCCTCAAAAATAA
4152031 AAACATGAAT
Statistics
Matches: 130, Mismatches: 20, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
158 130 1.00
ACGTcount: A:0.35, C:0.14, G:0.23, T:0.27
Consensus pattern (158 bp):
GAGTATCCCTTTAGAAATAACAGGGTTGGAGTATCCCCAATTATGAAAAATCGATGTTTCGAAAA
TAAAACCGGGGTTGGAGTATCCCCGATTATGAAAAATAAATGTTTTGGAAAGAAAACCAGGGATA
AAGTATCCCCTCAAAAATAATCGGGTCA
Found at i:4154452 original size:50 final size:50
Alignment explanation
Indices: 4154389--4154499 Score: 186
Period size: 50 Copynumber: 2.2 Consensus size: 50
4154379 TACATTTCTC
* *
4154389 GTATCGATACATCTAGGTAAAACCCAAAATGTATTGATACAATGAAGAAT
1 GTATCGATACATCTAGATAAAACCCAAAATGTATCGATACAATGAAGAAT
* *
4154439 GTATCGATACATCTAGATAAAACCCAGAATGTATCGATACAATGAAGGAT
1 GTATCGATACATCTAGATAAAACCCAAAATGTATCGATACAATGAAGAAT
4154489 GTATCGATACA
1 GTATCGATACA
4154500 AATTGTGAAA
Statistics
Matches: 57, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
50 57 1.00
ACGTcount: A:0.42, C:0.15, G:0.17, T:0.25
Consensus pattern (50 bp):
GTATCGATACATCTAGATAAAACCCAAAATGTATCGATACAATGAAGAAT
Found at i:4157965 original size:52 final size:53
Alignment explanation
Indices: 4157889--4158060 Score: 183
Period size: 52 Copynumber: 3.3 Consensus size: 53
4157879 CGAAAATAAT
* *
4157889 GGAGTTGGAATATCCCCAAAATAAAAAATCGATATTTTTGGAAATAAAAACAG
1 GGAGTTGGAGTATCCCCGAAATAAAAAATCGATATTTTTGGAAATAAAAACAG
* * ** * *
4157942 GGAG-TGGAGTATCCCCGAGATAAAAATTTTAT-TATTTTGAAAATGAAAAC-G
1 GGAGTTGGAGTATCCCCGAAATAAAAAATCGATAT-TTTTGGAAATAAAAACAG
* ** * *
4157993 AG-GTTGGAGTATCCTTGAAATGAAAAATCGATACTTTTGGAAATAAAAACA-
1 GGAGTTGGAGTATCCCCGAAATAAAAAATCGATATTTTTGGAAATAAAAACAG
4158044 GGAGTTGGAGTATCCCC
1 GGAGTTGGAGTATCCCC
4158061 TTGAAAATAA
Statistics
Matches: 92, Mismatches: 22, Indels: 11
0.74 0.18 0.09
Matches are distributed among these distances:
50 1 0.01
51 39 0.42
52 48 0.52
53 4 0.04
ACGTcount: A:0.41, C:0.12, G:0.21, T:0.27
Consensus pattern (53 bp):
GGAGTTGGAGTATCCCCGAAATAAAAAATCGATATTTTTGGAAATAAAAACAG
Found at i:4160582 original size:21 final size:21
Alignment explanation
Indices: 4160556--4160629 Score: 80
Period size: 21 Copynumber: 3.6 Consensus size: 21
4160546 AAGGTAGTTT
* *
4160556 TGTATCGATACATTTTAGGCA
1 TGTATCGATACATTTCACGCA
*
4160577 TGTATCGATACA-TTCACTCA
1 TGTATCGATACATTTCACGCA
**
4160597 TGTATCGATACATTT-ACAGTT
1 TGTATCGATACATTTCAC-GCA
4160618 TGTATCGATACA
1 TGTATCGATACA
4160630 AATTGTAGAA
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
20 19 0.42
21 26 0.58
ACGTcount: A:0.30, C:0.18, G:0.15, T:0.38
Consensus pattern (21 bp):
TGTATCGATACATTTCACGCA
Found at i:4162291 original size:5 final size:5
Alignment explanation
Indices: 4162281--4162305 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
4162271 AGTTGGAAAA
4162281 AAATT AAATT AAATT AAATT AAATT
1 AAATT AAATT AAATT AAATT AAATT
4162306 TTCAAAAATC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
AAATT
Found at i:4163040 original size:168 final size:164
Alignment explanation
Indices: 4162536--4163191 Score: 600
Period size: 166 Copynumber: 3.9 Consensus size: 164
4162526 CATGAATTCT
* * *
4162536 AAAAATTTTAAACCGAGAAAAATCCTCC-CGAAAATATTTATGGAATAGAAAACTTAATTTTTT-
1 AAAAATTTT-AACCGAGAAAAA-CCACCTCGAAAATATTTATGGAATAAAAAACTTGATTTTTTA
* *
4162599 GAAAATAGGAGAATTTCAAGGAAAAAATGAAAAACTCATGAAAATAAATGAAAATTTCAAAACTG
64 GAAAA-AGG-GAATTTCAAGGAAAAAATGAAAAACTCATGAAAATAAATG-AATTTTTAAAACTG
* *
4162664 ATTTACA-ATTATTTAAATGATGATATTTTATGAATATTA
126 A-TTAAATATTATTTAAATGATGATATTTGATGAATATTA
** * * * *
4162703 AAAAATTTTAATAGATAAAAACCCCCTCGAAAATATTTATGGAATAAAAAACTTGATTTTTCAAA
1 AAAAATTTTAACCGAGAAAAACCACCTCGAAAATATTTATGGAATAAAAAACTTGATTTTTTAGA
* * *
4162768 AATAAGAGAATTTAAAGGAAAAAAATGAAAAACTCATG-AAATAAATAAAATTTTTAAAACTGAT
66 AA-AAGGGAATTTCAAGG-AAAAAATGAAAAACTCATGAAAATAAAT-GAATTTTTAAAACTGAT
* * * *
4162832 TTACTATGATTTAAATGATGATGTTTGATGAATATTA
128 TAAATATTATTTAAATGATGATATTTGATGAATATTA
* * *
4162869 AAAAATTTGAACCGAGAAAAACCACCTCGAAAACATTTATGGAATTAAAAAAACTCGATTTTTTA
1 AAAAATTTTAACCGAGAAAAACCACCTCGAAAATATTTATGGAA-T-AAAAAACTTGATTTTTTA
* * *
4162934 GAAACAAGGGAGTTTCAAGGAGAAAAATGGAAAACTCATGAAAATAAATGACTTTTTAAAAACTG
64 GAAA-AAGGGAATTTCAAGGA-AAAAATGAAAAACTCATGAAAATAAATGAATTTTT-AAAACTG
* * *
4162999 ATTAAATAGTTA-TTAGATAATAATATTTGATGAAT-TT-
126 ATTAAATA-TTATTTAAATGATGATATTTGATGAATATTA
* * * * * *
4163036 AAAAATTTTAATCCGATGAGAATCCA-CTCAAAAAAATTTATGGAGA-AGAAAACTCTG-TATTT
1 AAAAATTTTAA-CCGA-GAAAAACCACCTCGAAAATATTTATGGA-ATAAAAAACT-TGATTTTT
* * * * *
4163098 TAGAAACATGAGGAATTCCAA--AAGAAAATAAAAAACTCATGGAACA-AAAGGAATTTTTCAAA
62 TAGAAA-AAG-GGAATTTCAAGGAA-AAAATGAAAAACTCAT-GAAAATAAATGAATTTTT-AAA
** ** *
4163160 ACTGATTTGATGGTAATTAAATGATGATATTT
122 ACTGATTAAATATTATTTAAATGATGATATTT
4163192 AAAGAATTTT
Statistics
Matches: 403, Mismatches: 66, Indels: 42
0.79 0.13 0.08
Matches are distributed among these distances:
164 3 0.01
165 56 0.14
166 163 0.40
167 54 0.13
168 77 0.19
169 48 0.12
170 2 0.00
ACGTcount: A:0.48, C:0.09, G:0.13, T:0.30
Consensus pattern (164 bp):
AAAAATTTTAACCGAGAAAAACCACCTCGAAAATATTTATGGAATAAAAAACTTGATTTTTTAGA
AAAAGGGAATTTCAAGGAAAAAATGAAAAACTCATGAAAATAAATGAATTTTTAAAACTGATTAA
ATATTATTTAAATGATGATATTTGATGAATATTA
Found at i:4163187 original size:334 final size:331
Alignment explanation
Indices: 4162527--4163167 Score: 712
Period size: 335 Copynumber: 1.9 Consensus size: 331
4162517 ACAATATTAC
* * * * *
4162527 ATGAATTCTAAAAATTTTAAACCGAGAAAAATCCTCCCGAAAATATTTATGGAATAGAAAACTTA
1 ATGAATTCTAAAAAATTTAAACCGAGAAAAATCCACCCGAAAACATTTATGGAATAAAAAACTCA
*
4162592 ATTTTTTGAAAATAGGAGAATTTCAAGGAAAAAATGAAAAACTCATGAAAATAAATGAAAATTTC
66 ATTTTTTGAAAATAGGAGAATTTCAAGGAAAAAATGAAAAACTCATGAAAATAAATGAAAATTTA
* * * *
4162657 AAAACTGATTTACAATTATTTAAATGATGATATTTTATGAATATTAAAAAATTTTAATAGATAAA
131 AAAACTGATTTAAAATTATTTAAATAATAATATTTGATGAATATTAAAAAATTTTAATAGATAAA
* * * * *
4162722 AACCCCCTCGAAAATATTTATGGAATAAAAAACTTGATTTTTCAAAAATAAGAGAATTTAAAGGA
196 AACCCACTCAAAAAAATTTATGGAATAAAAAACTTGATTTTACAAAAATAAGAGAATTCAAA-GA
* * *
4162787 AAAAAATGAAAAACTCATGAAATAAATAAAATTTTTAAAACTGATTTACTATGATTTAAATGATG
260 AAAAAATAAAAAACTCATGAAACAAATAAAATTTTTAAAACTGATTTACTATGAATTAAATGATG
4162852 ATGTTTG
325 ATGTTTG
*
4162859 ATGAATAT-TAAAAAATTTGAACCGAGAAAAA-CCACCTCGAAAACATTTATGGAATTAAAAAAA
1 ATGAAT-TCTAAAAAATTTAAACCGAGAAAAATCCACC-CGAAAACATTTATGGAA-T-AAAAAA
* * *
4162922 CTCGATTTTTTAGAAACA-AGG-GAGTTTCAAGGAGAAAAATGGAAAACTCATGAAAATAAATGA
62 CTCAATTTTTT-GAAA-ATAGGAGAATTTCAAGGA-AAAAATGAAAAACTCATGAAAATAAATGA
*** *
4162985 CTTTTTAAAAACTGA-TTAAATAGTTA-TTAGATAATAATATTTGATGAAT-TT-AAAAATTTTA
124 AAATTTAAAAACTGATTTAAA-A-TTATTTAAATAATAATATTTGATGAATATTAAAAAATTTTA
* * * * * * * *
4163046 ATCCGATGAGAATCCACTCAAAAAAATTTATGGAGA-AGAAAACTCTGTATTTTAGAAACATGAG
187 AT-AGATAAAAACCCACTCAAAAAAATTTATGGA-ATAAAAAACT-TG-ATTTTACAAAAATAAG
* * * *
4163110 -GAATTCCAA-AAGAAAATAAAAAACTCATGGAACAAA-AGGAATTTTTCAAAACTGATTT
248 AGAATTCAAAGAAAAAAATAAAAAACTCATGAAACAAATA-AAATTTTT-AAAACTGATTT
4163168 GATGGTAATT
Statistics
Matches: 257, Mismatches: 37, Indels: 28
0.80 0.11 0.09
Matches are distributed among these distances:
331 4 0.02
332 44 0.17
333 44 0.17
334 73 0.28
335 76 0.30
336 16 0.06
ACGTcount: A:0.49, C:0.09, G:0.12, T:0.30
Consensus pattern (331 bp):
ATGAATTCTAAAAAATTTAAACCGAGAAAAATCCACCCGAAAACATTTATGGAATAAAAAACTCA
ATTTTTTGAAAATAGGAGAATTTCAAGGAAAAAATGAAAAACTCATGAAAATAAATGAAAATTTA
AAAACTGATTTAAAATTATTTAAATAATAATATTTGATGAATATTAAAAAATTTTAATAGATAAA
AACCCACTCAAAAAAATTTATGGAATAAAAAACTTGATTTTACAAAAATAAGAGAATTCAAAGAA
AAAAATAAAAAACTCATGAAACAAATAAAATTTTTAAAACTGATTTACTATGAATTAAATGATGA
TGTTTG
Found at i:4164443 original size:43 final size:43
Alignment explanation
Indices: 4164390--4165027 Score: 164
Period size: 42 Copynumber: 15.2 Consensus size: 43
4164380 ATAGGTTAAT
* *
4164390 AAAGAATAAAAAGATTTACCCAGGACTAAGTCGACAGGTAAAC
1 AAAGGATAAAAAGATTTACCCAGGACTAAGCCGACAGGTAAAC
* * ** * * * * *
4164433 AAAGGATAAAAAGGTTGA-CGGGGATTGAA-CCAATAAGTTAAC
1 AAAGGATAAAAAGATTTACCCAGGACT-AAGCCGACAGGTAAAC
* *
4164475 AAAGGATAAAAGGATTTACCTAGGACTAAGCCGACAGGTAAAC
1 AAAGGATAAAAAGATTTACCCAGGACTAAGCCGACAGGTAAAC
** * * * * *
4164518 AAAGGATAAATAAG--TTGGCCAGGATTGAA-CCAAAAAGTCAAC
1 AAAGGATAAA-AAGATTTACCCAGGACT-AAGCCGACAGGTAAAC
* * * * *
4164560 AAAGGATAAAAGGATTTACTC-GAAACTAAGCTGACAAGTAAAC
1 AAAGGATAAAAAGATTTACCCAG-GACTAAGCCGACAGGTAAAC
* * * * * *
4164603 AAAGGAT-AAAAGAGTTGA-TCGGGA--AAGAACGGACAAGTCAAC
1 AAAGGATAAAAAGA-TTTACCCAGGACTAAG--CCGACAGGTAAAC
* * * * * * *
4164645 AAAGGAT-AAGAGATTTACGCGGGACCAAGCTGATAGATAAAC
1 AAAGGATAAAAAGATTTACCCAGGACTAAGCCGACAGGTAAAC
* * * * * *
4164687 AAAGAATAAAAA-AGTTGA-TCAAGATTGAA-CCGACAAGT---C
1 AAAGGATAAAAAGA-TTTACCCAGGACT-AAGCCGACAGGTAAAC
* * * * * *
4164726 --A--ACAAAAGGATTTACCTAGGACCAAGCTGATAGGTAAAC
1 AAAGGATAAAAAGATTTACCCAGGACTAAGCCGACAGGTAAAC
* * * * * * *
4164765 AAAGGATTAAAAAG-TTGA-TCGGGATTGAA-CTGACAAGTCAAC
1 AAAGGA-TAAAAAGATTTACCCAGGACT-AAGCCGACAGGTAAAC
* * * *
4164807 AAAGGATAAAAAGATTTACTCAGGACTAAGCTGATAAGTAAAC
1 AAAGGATAAAAAGATTTACCCAGGACTAAGCCGACAGGTAAAC
* * * * * * * *
4164850 AAAAGATAAAGAAG--TTAACCGGGATTGAA-CCAACAAGTTAAT
1 AAAGGATAAA-AAGATTTACCCAGGACT-AAGCCGACAGGTAAAC
* ** * *
4164892 AAAGGATAAAAGGATTTACCTGGGACTAAGCCGATAAGTAAAC
1 AAAGGATAAAAAGATTTACCCAGGACTAAGCCGACAGGTAAAC
* * * *** * *
4164935 AAAGGATAAAAA-AGTTGACCGA-GATTAAATTGACAAGTCAAC
1 AAAGGATAAAAAGA-TTTACCCAGGACTAAGCCGACAGGTAAAC
* * * *
4164977 AAAGGATAAAAAGATTTATCCTAGAACTAAGTCGATAGGTAAAC
1 AAAGGATAAAAAGATTTA-CCCAGGACTAAGCCGACAGGTAAAC
4165021 AAAGGAT
1 AAAGGAT
4165028 GAAAGAGTTG
Statistics
Matches: 422, Mismatches: 130, Indels: 85
0.66 0.20 0.13
Matches are distributed among these distances:
35 10 0.02
36 10 0.02
37 1 0.00
39 2 0.00
40 3 0.01
41 15 0.04
42 200 0.47
43 148 0.35
44 33 0.08
ACGTcount: A:0.47, C:0.13, G:0.22, T:0.18
Consensus pattern (43 bp):
AAAGGATAAAAAGATTTACCCAGGACTAAGCCGACAGGTAAAC
Found at i:4164473 original size:85 final size:82
Alignment explanation
Indices: 4164161--4165062 Score: 673
Period size: 85 Copynumber: 10.7 Consensus size: 82
4164151 GGTTACCTAA
* * * *
4164161 GACTAAGCCGACAAGTAAACAACA-AATACAAAAGTTGATCGGGATTGAACCAACAAGACAACAA
1 GACTAAG-CGACAGGTAAACAA-AGGATA-AAAAGTTGA-CGGGATTGAACCGACAAGTCAACAA
**
4164225 AGGATAAAAA-ATTTATCGAAG
62 AGGATAAAAAGATTTA-CCCAG
* * * * *
4164246 G-CTAAGCCAACAGGTAAACAAAGGATAAAAAGGTTTATCGAGATTAAACCGAGAAGTCAACAAA
1 GACTAAG-CGACAGGTAAACAAAGGATAAAAA-GTTGA-CGGGATTGAACCGACAAGTCAACAAA
* *
4164310 AGAT-AAAGGATTTACCC-G
63 GGATAAAAAGATTTACCCAG
* * * * ** * * * *
4164328 AGACTAAGCTAACAGGTAACCAAA-AATAAAGAAGTTGATTGGGATTGAATTGATAGGTTAATAA
1 -GACTAAGC-GACAGGTAAACAAAGGATAAA-AAGTTGA-CGGGATTGAACCGACAAGTCAACAA
*
4164392 AGAATAAAAAGATTTACCCAG
62 AGGATAAAAAGATTTACCCAG
* * *
4164413 GACTAAGTCGACAGGTAAACAAAGGATAAAAAGGTTGACGGGGATTGAACCAATAAGTTAACAAA
1 GACTAAG-CGACAGGTAAACAAAGGATAAAAA-GTTGAC-GGGATTGAACCGACAAGTCAACAAA
* *
4164478 GGATAAAAGGATTTACCTAG
63 GGATAAAAAGATTTACCCAG
* * * *
4164498 GACTAAGCCGACAGGTAAACAAAGGATAAATAAGTTGGCCAGGATTGAACCAAAAAGTCAACAAA
1 GACTAAG-CGACAGGTAAACAAAGGATAAA-AAGTT-GACGGGATTGAACCGACAAGTCAACAAA
* *
4164563 GGATAAAAGGATTTACTC-G
63 GGATAAAAAGATTTACCCAG
* * ** *
4164582 AAACTAAGCTGACAAGTAAACAAAGGATAAAAGAGTTGATCGGGAAAGAACGGACAAGTCAACAA
1 -GACTAAGC-GACAGGTAAACAAAGGATAAAA-AGTTGA-CGGGATTGAACCGACAAGTCAACAA
* * *
4164647 AGGAT-AAGAGATTTACGCGG
62 AGGATAAAAAGATTTACCCAG
* * * * **
4164667 GACCAAGCTGATAGATAAACAAAGAATAAAAAAGTTGATCAAGATTGAACCGACAAGTCAAC---
1 GACTAAGC-GACAGGTAAACAAAGGAT-AAAAAGTTGA-CGGGATTGAACCGACAAGTCAACAAA
* *
4164729 ----AAAAGGATTTACCTAG
63 GGATAAAAAGATTTACCCAG
* * *
4164745 GACCAAGCTGATAGGTAAACAAAGGATTAAAAAGTTGATCGGGATTGAACTGACAAGTCAACAAA
1 GACTAAGC-GACAGGTAAACAAAGGA-TAAAAAGTTGA-CGGGATTGAACCGACAAGTCAACAAA
*
4164810 GGATAAAAAGATTTACTCAG
63 GGATAAAAAGATTTACCCAG
* * * * * * *
4164830 GACTAAGCTGATAAGTAAACAAAAGATAAAGAAGTTAACCGGGATTGAACCAACAAGTTAATAAA
1 GACTAAGC-GACAGGTAAACAAAGGATAAA-AAGTTGA-CGGGATTGAACCGACAAGTCAACAAA
* **
4164895 GGATAAAAGGATTTACCTGG
63 GGATAAAAAGATTTACCCAG
* * * * **
4164915 GACTAAGCCGATAAGTAAACAAAGGATAAAAAAGTTGACCGAGATTAAATTGACAAGTCAACAAA
1 GACTAAG-CGACAGGTAAACAAAGGAT-AAAAAGTTGA-CGGGATTGAACCGACAAGTCAACAAA
*
4164980 GGATAAAAAGATTTATCCTAG
63 GGATAAAAAGATTTA-CCCAG
* * * *
4165001 AACTAAGTCGATAGGTAAACAAAGGATGAAAGAGTTGATTGGGATTGAACCGACAAGTCAAC
1 GACTAAG-CGACAGGTAAACAAAGGAT-AAAAAGTTGA-CGGGATTGAACCGACAAGTCAAC
4165063 CAATTAAAAG
Statistics
Matches: 665, Mismatches: 118, Indels: 67
0.78 0.14 0.08
Matches are distributed among these distances:
78 65 0.10
79 1 0.00
82 1 0.00
83 40 0.06
84 172 0.26
85 323 0.49
86 63 0.09
ACGTcount: A:0.47, C:0.13, G:0.22, T:0.18
Consensus pattern (82 bp):
GACTAAGCGACAGGTAAACAAAGGATAAAAAGTTGACGGGATTGAACCGACAAGTCAACAAAGGA
TAAAAAGATTTACCCAG
Found at i:4164807 original size:247 final size:249
Alignment explanation
Indices: 4164482--4165062 Score: 674
Period size: 247 Copynumber: 2.3 Consensus size: 249
4164472 AACAAAGGAT
* * ** *
4164482 AAAAGGATTTACCTAGGACTAAGCCGACAGGTAAACAAAGGA-TAAATAAGTTGGCCAGGATTGA
1 AAAAGGATTTACCTAGGACTAAGCTGATAGGTAAACAAAGGATTAAA-AAGTTGATCGGGATTGA
* * * *
4164546 ACCAAAAAGTCAACAAAGGATAAAAGGATTTACTC-GAAACTAAGCTGACAAGTAAACAAAGGAT
65 ACCGACAAGTCAACAAAGGATAAAAAGATTTACTCAG-AACTAAGCTGACAAGTAAACAAAAGAT
* * ** *
4164610 AAA-AGAGTTGATCGGGAAAGAACGGACAAGTCAACAAAGGATAAGA-GATTTACGC-GGGACCA
129 AAAGA-AGTTAACCGGGAAAGAACCAACAAGTCAACAAAGGATAAAAGGATTTAC-CTGGGACCA
* * *
4164672 AGCTGAT-AGATAAACAAAGAATAAAAAAGTTGATCAAGATTGAACCGACAAGTCAAC-
192 AGCCGATAAG-TAAACAAAGAATAAAAAAGTTGACCAAGATTAAACCGACAAGTCAACA
*
4164729 AAAAGGATTTACCTAGGACCAAGCTGATAGGTAAACAAAGGATTAAAAAGTTGATCGGGATTGAA
1 AAAAGGATTTACCTAGGACTAAGCTGATAGGTAAACAAAGGATTAAAAAGTTGATCGGGATTGAA
* * *
4164794 CTGACAAGTCAACAAAGGATAAAAAGATTTACTCAGGACTAAGCTGATAAGTAAACAAAAGATAA
66 CCGACAAGTCAACAAAGGATAAAAAGATTTACTCAGAACTAAGCTGACAAGTAAACAAAAGATAA
** * * *
4164859 AGAAGTTAACCGGGATTGAACCAACAAGTTAATAAAGGATAAAAGGATTTACCTGGGACTAAGCC
131 AGAAGTTAACCGGGAAAGAACCAACAAGTCAACAAAGGATAAAAGGATTTACCTGGGACCAAGCC
* * **
4164924 GATAAGTAAACAAAGGATAAAAAAGTTGACCGAGATTAAATTGACAAGTCAACAAAGGA
196 GATAAGTAAACAAAGAATAAAAAAGTTGACCAAGATTAAACCGACAAGTCAAC-----A
* * * * *
4164983 TAAAAAGATTTATCCTAGAACTAAG-TCGATAGGTAAACAAAGGATGAAAGAGTTGATTGGGATT
1 -AAAAGGATTTA-CCTAGGACTAAGCT-GATAGGTAAACAAAGGATTAAAAAGTTGATCGGGATT
4165047 GAACCGACAAGTCAAC
63 GAACCGACAAGTCAAC
4165063 CAATTAAAAG
Statistics
Matches: 282, Mismatches: 37, Indels: 21
0.83 0.11 0.06
Matches are distributed among these distances:
247 144 0.51
248 66 0.23
249 2 0.01
255 11 0.04
256 59 0.21
ACGTcount: A:0.46, C:0.13, G:0.22, T:0.18
Consensus pattern (249 bp):
AAAAGGATTTACCTAGGACTAAGCTGATAGGTAAACAAAGGATTAAAAAGTTGATCGGGATTGAA
CCGACAAGTCAACAAAGGATAAAAAGATTTACTCAGAACTAAGCTGACAAGTAAACAAAAGATAA
AGAAGTTAACCGGGAAAGAACCAACAAGTCAACAAAGGATAAAAGGATTTACCTGGGACCAAGCC
GATAAGTAAACAAAGAATAAAAAAGTTGACCAAGATTAAACCGACAAGTCAACA
Found at i:4164809 original size:42 final size:40
Alignment explanation
Indices: 4164759--4164989 Score: 174
Period size: 42 Copynumber: 5.5 Consensus size: 40
4164749 AAGCTGATAG
*
4164759 GTAAACAAAGGATTAAAAAGTTGATCGGGATTGAACTGACAA
1 GTAAACAAAGGA-TAAAAAGTTGACCGGGATT-AACTGACAA
* * * * *
4164801 GTCAACAAAGGATAAAAAGATTTACTCAGGACTAAGCTGATAA
1 GTAAACAAAGGATAAAAAG-TTGAC-CGGGATTAA-CTGACAA
* * **
4164844 GTAAACAAAAGATAAAGAAGTTAACCGGGATTGAACCAACAA
1 GTAAACAAAGGATAAA-AAGTTGACCGGGATT-AACTGACAA
* * * * * * *
4164886 GTTAATAAAGGATAAAAGGATTTACCTGGGACTAAGCCGATAA
1 GTAAACAAAGGATAAAAAG-TTGACC-GGGATTAA-CTGACAA
* *
4164929 GTAAACAAAGGATAAAAAAGTTGACCGAGATTAAATTGACAA
1 GTAAACAAAGGAT-AAAAAGTTGACCGGGATT-AACTGACAA
*
4164971 GTCAACAAAGGATAAAAAG
1 GTAAACAAAGGATAAAAAG
4164990 ATTTATCCTA
Statistics
Matches: 147, Mismatches: 32, Indels: 21
0.74 0.16 0.10
Matches are distributed among these distances:
41 15 0.10
42 65 0.44
43 59 0.40
44 8 0.05
ACGTcount: A:0.48, C:0.12, G:0.21, T:0.19
Consensus pattern (40 bp):
GTAAACAAAGGATAAAAAGTTGACCGGGATTAACTGACAA
Found at i:4164834 original size:332 final size:334
Alignment explanation
Indices: 4164153--4165062 Score: 830
Period size: 332 Copynumber: 2.7 Consensus size: 334
4164143 ATGAAAGGGG
* * * * *
4164153 TTACCTAAGACTAAGCCGACAAGTAAACAACAA-ATACAA-AAGTTGATCGGGATTGAACCAACA
1 TTACCTAGGACTAAGCCGACAAGTAAACAA-AAGATA-AAGAAGTTAACCAGGATTGAACCAAAA
* * * * * * *
4164216 AGACAACAAAGGATAAAA-AATTTATC-GAAGGCTAAGCCAACAGGTAAACAAAGGATAAAAAGG
64 AGTCAACAAAGGATAAAAGGATTTACCTGAA-ACTAAGCCGACAAGTAAACAAAGGATAAAAAAG
* * * * * * * * * * * *
4164279 TTTATCGAGATTAAACCGAGAAGTCAACAAAAGAT-AAAGGATTTACCCGAG-ACTAAG-CTAAC
128 TTGACCGAGATAAAACGGACAAGTCAACAAAGGATAAAAAGATTTATCCTAGAACCAAGTC-GAT
* * * *** ** * * * *
4164341 AGGTAACCAAA-AATAAAGAAGTTGATTGGGATTGAATTGATAGGTTAATAAAGAATAAAAAGAT
192 AGATAAACAAAGAATAAAAAAGTTGATCAAGATTGAACCGACA----AGT---CAACAAAAAGAT
* *
4164405 TTACCCAGGACTAAGTCGACAGGTAAACAAAGGATAAAAAGGTTGACGGGGATTGAACCAATAAG
250 TTACCCAGGACCAAGTCGACAGGTAAACAAAGGATAAAAAGGTTGACGGGGATTGAACCAACAAG
* *
4164470 TTAACAAAGGATAAAAGGAT
315 TCAACAAAGGATAAAAAGAT
* * * **
4164490 TTACCTAGGACTAAGCCGACAGGTAAACAAAGGATAAATAAGTTGGCCAGGATTGAACCAAAAAG
1 TTACCTAGGACTAAGCCGACAAGTAAACAAAAGATAAAGAAGTTAACCAGGATTGAACCAAAAAG
* *
4164555 TCAACAAAGGATAAAAGGATTTA-CTCGAAACTAAGCTGACAAGTAAACAAAGGATAAAAGAGTT
66 TCAACAAAGGATAAAAGGATTTACCT-GAAACTAAGCCGACAAGTAAACAAAGGATAAAAAAGTT
* * * * *
4164619 GATCGGGA-AAGAACGGACAAGTCAACAAAGGAT-AAGAGATTTA-CGC-GGGACCAAG-CTGAT
130 GACCGAGATAA-AACGGACAAGTCAACAAAGGATAAAAAGATTTATC-CTAGAACCAAGTC-GAT
* *
4164679 AGATAAACAAAGAATAAAAAAGTTGATCAAGATTGAACCGACAAGTCAACAAAAGGATTTACCTA
192 AGATAAACAAAGAATAAAAAAGTTGATCAAGATTGAACCGACAAGTCAACAAAAAGATTTACCCA
* **
4164744 GGACCAAG-CTGATAGGTAAACAAAGGATTAAAAA-GTTGATC-GGGATTGAACTGACAAGTCAA
257 GGACCAAGTC-GACAGGTAAACAAAGGA-TAAAAAGGTTGA-CGGGGATTGAACCAACAAGTCAA
4164806 CAAAGGATAAAAAGAT
319 CAAAGGATAAAAAGAT
* * * *
4164822 TTA-CTCAGGACTAAGCTGATAAGTAAACAAAAGATAAAGAAGTTAACCGGGATTGAACCAACAA
1 TTACCT-AGGACTAAGCCGACAAGTAAACAAAAGATAAAGAAGTTAACCAGGATTGAACCAAAAA
* * ** *
4164886 GTTAATAAAGGATAAAAGGATTTACCTGGGACTAAGCCGATAAGTAAACAAAGGATAAAAAAGTT
65 GTCAACAAAGGATAAAAGGATTTACCTGAAACTAAGCCGACAAGTAAACAAAGGATAAAAAAGTT
* ** * *
4164951 GACCGAGATTAAATTGACAAGTCAACAAAGGATAAAAAGATTTATCCTAGAACTAAGTCGATAGG
130 GACCGAGATAAAACGGACAAGTCAACAAAGGATAAAAAGATTTATCCTAGAACCAAGTCGATAGA
* * * ***
4165016 TAAACAAAGGATGAAAGAGTTGATTGGGATTGAACCGACAAGTCAAC
195 TAAACAAAGAATAAAAAAGTTGATCAAGATTGAACCGACAAGTCAAC
4165063 CAATTAAAAG
Statistics
Matches: 474, Mismatches: 80, Indels: 41
0.80 0.13 0.07
Matches are distributed among these distances:
331 3 0.01
332 208 0.44
333 20 0.04
334 53 0.11
335 3 0.01
336 3 0.01
337 72 0.15
338 85 0.18
339 27 0.06
ACGTcount: A:0.47, C:0.14, G:0.21, T:0.19
Consensus pattern (334 bp):
TTACCTAGGACTAAGCCGACAAGTAAACAAAAGATAAAGAAGTTAACCAGGATTGAACCAAAAAG
TCAACAAAGGATAAAAGGATTTACCTGAAACTAAGCCGACAAGTAAACAAAGGATAAAAAAGTTG
ACCGAGATAAAACGGACAAGTCAACAAAGGATAAAAAGATTTATCCTAGAACCAAGTCGATAGAT
AAACAAAGAATAAAAAAGTTGATCAAGATTGAACCGACAAGTCAACAAAAAGATTTACCCAGGAC
CAAGTCGACAGGTAAACAAAGGATAAAAAGGTTGACGGGGATTGAACCAACAAGTCAACAAAGGA
TAAAAAGAT
Done.