Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold290
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 591627
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.33
File 1 of 4
Found at i:1161 original size:317 final size:312
Alignment explanation
Indices: 547--1186 Score: 957
Period size: 311 Copynumber: 2.0 Consensus size: 312
537 TTCTAGTAAA
* * *
547 GCACTATAAACACATTCTCCTCTTTGGACAAAAGACTTTGAAGTTTTTCTTTTGCCTGGAAATCT
1 GCACCATAAACACATTCTCCTCTTTGGACAAAAGACATTAAAGTTTTTCTTTTGCCTGGAAATCT
* *
612 TTTCTTCGCTCTATTTTCCTTAAATGAAAGTTCATCCCTTGAATAAGACAAGAATCATTTCTCCT
66 TTTCTTCGCCCTATTTTCCTTAAATGAAAGTTCATCCCTTGAATAAGACAAGAATCATTTCTCCC
* * * * *
677 TACAGTCTCTTTTATTTTCAAGATTGGGAAGCGAAACACATTGCCTTGTTAGTATATCCAACAGT
131 TACAGTCTCCTTTATTTTCAACATTGGGAAGCAAAACACATTGCCTTGTTAGGATACCCAACAGT
*
742 GATGCTTGGTGTCTCAAGAAAAGCTTTTCTTCGTGTCATTTTGATAGAATCAACGTTTGTTTCTT
196 GATGCTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCATTTTGATAGAATCAACGTTTGTTTCTT
* *
807 AAATAAGCTGAATTTTAATACTCAAACTAAGCCTCATTC-TTTTAAATTTAG
261 AAATAAGCCGAACTTTAATACTCAAACTAAGCCTCATTCTTTTTAAATTTAG
*
858 GCACCATAAACACATTCTCCT-TTTATGACAAAAGACATTAAAGTTTTTCTTTTGCCTGGAAATC
1 GCACCATAAACACATTCTCCTCTTT-GGACAAAAGACATTAAAGTTTTTCTTTTGCCTGGAAATC
922 TTTTCTTCGCCCTATTTTCCTTAAAAATGAAAGTTCATCCCTTGAATAAGACAA-ACATCGA-TT
65 TTTTCTTCGCCCTATTTTCCTT--AAATGAAAGTTCATCCCTTGAATAAGACAAGA-ATC-ATTT
* * *
985 CTCCCTACAGTCTTCCTTTCTTTTCAACATTGGGATGCCAAAACACTTTGCCTTTGTTAGGATAC
126 CTCCCTACAGTC-TCCTTTATTTTCAACATTGGGAAG-CAAAACACATTGCC-TTGTTAGGATAC
* * *
1050 CCGATATTGATGCTTTGGTGTCTCAAG-AAAGCTTTTCTTCGCGTCATTTTTGATAGAATCAACG
188 CCAACAGTGATGC-TTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCA-TTTTGATAGAATCAACG
* *
1114 TTTGTTTCTTAAATAAGCCGAACTTTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAG
251 TTTGTTTCTTAAATAAGCCGAACTTTAATACTCAAACTAAGCCTCATTCTTTTTAAATTTAG
1176 GCACCATAAAC
1 GCACCATAAAC
1187 TTAGTCTTCT
Statistics
Matches: 296, Mismatches: 22, Indels: 15
0.89 0.07 0.05
Matches are distributed among these distances:
310 3 0.01
311 77 0.26
312 1 0.00
313 46 0.16
314 21 0.07
315 12 0.04
316 38 0.13
317 76 0.26
318 22 0.07
ACGTcount: A:0.29, C:0.21, G:0.13, T:0.38
Consensus pattern (312 bp):
GCACCATAAACACATTCTCCTCTTTGGACAAAAGACATTAAAGTTTTTCTTTTGCCTGGAAATCT
TTTCTTCGCCCTATTTTCCTTAAATGAAAGTTCATCCCTTGAATAAGACAAGAATCATTTCTCCC
TACAGTCTCCTTTATTTTCAACATTGGGAAGCAAAACACATTGCCTTGTTAGGATACCCAACAGT
GATGCTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCATTTTGATAGAATCAACGTTTGTTTCTT
AAATAAGCCGAACTTTAATACTCAAACTAAGCCTCATTCTTTTTAAATTTAG
Found at i:2979 original size:475 final size:474
Alignment explanation
Indices: 865--7846 Score: 10610
Period size: 476 Copynumber: 14.7 Consensus size: 474
855 TAGGCACCAT
* *
865 AAACACATTCTCCT-TTTATGACAAAAGACATTAAAGTTTTTCTTTTGCCTGGAAATCTTTTCTT
1 AAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTTCTTTTGCCTGGAAATCTTTTCTT
* *
929 CGCCCTATTTTCCTTAAAAATGAAAGTTCATCCCTTGAATAAGACAAACATCGATTCTCCCT-AC
66 CGCCCTATTTTCCTT-AAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGTTTCT-CCTAAC
* * * *
993 AGTCTTCCTTTCTTTTCAACATTGGGATGCCAAAACACTTTGCCTTTGTTAGGATACCCGATATT
129 AGTC-TCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCGACATT
* *
1058 GATGCTTTGGTGTCTCAAG-AAAGCTTTTCTTCGCGTCATTTTTGATAGAATCAACGTTTGTTTC
193 GATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCGTTTTTGATAGAATCAACGTTTGTCTC
*
1122 TTAAATAAGCCGAACTTTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAAAC
258 TTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAAAC
* * * * **
1187 TTAGTCTTCTCATTAGGATACACGATATTGACGCTCTGGTTTCGCAACTAAGGCTTACTTCCCAC
323 ATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTCCCAC
* * *
1252 CAATCCTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGAAAAATATGTATTCTAGTAATGATCTTC
388 CAATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAG-ACAATATGGATTCTAGTAATGATCTTC
*
1317 ATTCTTTTTCTGATAAAGCACTAT
452 ATTCTTTTTC-GATAAAGCACTAC
** * *
1341 AAACACATTCTCCTGATTAGGACAAGAGACATTGAAGTTTTTCTTTTTCC-GAGAAATCTTTTCT
1 AAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTTCTTTTGCCTG-GAAATCTTTTCT
* * * *
1405 TCGCCTTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGAATCATTTCTCCTTACA
65 TCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGTTTCTCCTAACA
* * * * * *
1470 GTCTCTTTTATTTTCAAGATTGGGAAGCGAAAAACACATTGCCTTTGTTAGTATACCCAACAGTG
130 GTCTCCTTTCTTTTCAAGATTGGGAAGC-CAAAACACATTGCCTTTGTTAGGATACCCGACATTG
* * *
1535 ATGCTTTAGTGTCTCAAGAAAAGCTTTTCTTCGCATCGTTTTTAATAGAATCAACGTTTGTCTCT
194 ATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCGTTTTTGATAGAATCAACGTTTGTCTCT
* * *
1600 TAAATATGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATATAGGCACCATAAACT
259 TAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAAACA
* *
1665 TAGTCATCTCATTAGGATACACAATATTGATGCTTTGG-TTCGCAACAAAGGC-TTTTTCCCACC
324 TAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTCCCACC
1728 AATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAATATGGATTCTAGTAATGATCTTCAT
389 AATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAATATGGATTCTAGTAATGATCTTCAT
* *
1793 TCTTTTTTCGATAAAGTACTAT
454 TC-TTTTTCGATAAAGCACTAC
* * *
1815 AAACACATTCTCCTCTTTGGGGCAAAAGACTTTGAAGTTTTTCTTTTGCCTGGAAATCTTTTCTT
1 AAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTTCTTTTGCCTGGAAATCTTTTCTT
* * * *
1880 CGCTCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAAGAAGACAAGCATCGTTTCTTCTAACTG
66 CGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGTTTCTCCTAACAG
*
1945 TCCCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCGACATTGAT
131 TCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCGACATTGAT
* * * *
2010 GCTTTGGTGTCTCGAGAAAAGCTTTTCTTGGCATCCTTTTTGATAGAATCAACGTTTGTCTCTTA
196 GCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCGTTTTTGATAGAATCAACGTTTGTCTCTTA
* *
2075 AATAAGCCGAACTTTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAAACTTA
261 AATAAGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAAACATA
* * * * * *
2140 GTCTTCTCATTAGGATACACGATATTGACGCTCTGGTTTCGCAACTAAGGGTTTCTTCCCTCCAA
326 GTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTCCCACCAA
* *
2205 TCCTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGTATTCTAGTAATGATCTTCATT
391 TCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGAC-AATATGGATTCTAGTAATGATCTTCATT
* *
2270 CTTTTTCTGATAAAGCGCTAT
455 CTTTTTC-GATAAAGCACTAC
** * *
2291 AAACACATTCTCCTGATTAGGACAAGAGACATTGAAGTTTTTCTTTTTCC-GAGAAATCTTTTCT
1 AAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTTCTTTTGCCTG-GAAATCTTTTCT
* * * * *
2355 TCGCCTTATTTTCCTTAAAATGAAAGTTCATCTCTTGAATAAGACAAGAATCATTTCTCCTTACA
65 TCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGTTTCTCCTAACA
** * * *
2420 GTCTTTTTTCTTTTCAAGATTGGGAAGCGAAAACACATTGCCTTTGTTAGTATACCCAACATTGA
130 GTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCGACATTGA
* * * *
2485 TGCTTTAGTGTCT-AAGAAAAGCTTTTCTTCGCATCGTTTTTAATAGAATCAATGTTTGTCTCTT
195 TGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCGTTTTTGATAGAATCAACGTTTGTCTCTT
* *
2549 AAATATGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAAATTTAGGCACCATAAACAT
260 AAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAAACAT
* *** * * *
2614 AGTCCTCTCATTAGGATTGGCGATAGTGATGCTTTGGTTTTGCAACAAAGGATTTTTTTCCCACC
325 AGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGG-CTTTTTTCCCACC
* *
2679 AATCGTTGTAAAGTCTAAGTTCGTGCCACAAATGAGACAATATGGATTCTAGCAATGATCTTCAT
389 AATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAATATGGATTCTAGTAATGATCTTCAT
2744 TCTTTTTCGATAAAGCACTAC
454 TCTTTTTCGATAAAGCACTAC
* * * * **
2765 AAACACATTCTCATCTTTAGGACAAAAGACTTTGAAGTTTTTCTTTTTCTTATAAATCTTTTCTT
1 AAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTTCTTTTGCCTGGAAATCTTTTCTT
* * * * *
2830 TGCACTATTTTCCTTAAAATGAAGGTTCTTCCCTTGAATAAGACAAGCATCGTTTCTCCTAACAA
66 CGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGTTTCTCCTAACAG
* *
2895 TCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTG-CTATTGTTAGCATACTCGACATTGA
131 TCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCT-TTGTTAGGATACCCGACATTGA
*
2959 TGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCACGTCGTTTTTGATAGAATCAACGTTTGTCTCTT
195 TGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCGTTTTTGATAGAATCAACGTTTGTCTCTT
* * *
3024 AAAAAAGCCGAACTTTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAAACTT
260 AAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAAACAT
* *
3089 AGTCTTCTCATTAGGATACACGATATTGATGCTCTGGTTTCGCAACAAAGGTTTTTTTCCCACCA
325 AGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTCCCACCA
* * *
3154 ATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACACGGATTCTAGTAATGAACTTCAT
390 ATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGAC-AATATGGATTCTAGTAATGATCTTCAT
*
3219 TCTTTTCCCGATAAAGCACTAC
454 TCTTTT-TCGATAAAGCACTAC
*
3241 AAACACATTCTCCTCTTTGGGACAAAAGACATTGAAGTTTTTCTTTTGCCTGGAAATCTTTTCTT
1 AAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTTCTTTTGCCTGGAAATCTTTTCTT
* * * * *
3306 CTCCATATTTTGCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCCTAATAG
66 CGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGTTTCTCCTAACAG
* * * ** * * * *
3371 TCTCCATTCTTTTCAGGATTGGGAAGCTAAAACACATTGCCTTCATTTGCATACACAACATTGAT
131 TCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCGACATTGAT
* * *
3436 GCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGTGTCATTTTTGATAGAATTAACGTTTGTCTCTTA
196 GCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCGTTTTTGATAGAATCAACGTTTGTCTCTTA
* * * *
3501 AAAAAGCCAAACATTAATACTCAAACTAATACTCATTCCTTTTAGATTTAGGCACCATAAACATA
261 AATAAGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAAACATA
* * *
3566 GTCTTCTCGTTAGGATACACGATATTGATGCTTTGGTTTCACAACAAAGGCTTTCTTCCCACCAA
326 GTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTCCCACCAA
3631 TCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAATATGGATTCTAGTAATGATCTTCATTC
391 TCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAATATGGATTCTAGTAATGATCTTCATTC
*
3696 TTTTTTCGATAAAGTACTAC
456 -TTTTTCGATAAAGCACTAC
* *
3716 AAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTTCTTTTGCATGGTAATCTTTTCTT
1 AAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTTCTTTTGCCTGGAAATCTTTTCTT
* * *
3781 TGCCCTATTTTCCCTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCCTAACAG
66 CGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGTTTCTCCTAACAG
* * * * *
3846 TCTCTTTTCTTTTCAACAATGGGAAGCCAAAACACATTG-CTACTGATAGGATACCCGACATTGA
131 TCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCT-TTGTTAGGATACCCGACATTGA
* * * * * *
3910 TGCTTTGGAGTCTCGAGAAAACCTTTTCTTGGCATCCTTTTTGATAGAATCAACGTTTGTCTCTT
195 TGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCGTTTTTGATAGAATCAACGTTTGTCTCTT
*
3975 AAATAAGCTGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAAACAT
260 AAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAAACAT
* * *
4040 AGTCTTCTCATTAGGATACACGATATTGATGCTCTGGTTTCACAACAAAGGCTTTTTTCCCACTA
325 AGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTCCCACCA
* *
4105 ATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATACGGATTCTAGTAATGAACTTCAT
390 ATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGAC-AATATGGATTCTAGTAATGATCTTCAT
*
4170 TCTTTTTCTAATAAAGCACTAC
454 TCTTTTTC-GATAAAGCACTAC
* *
4192 AAACACATTCTCCTCTTTAGGACAAAAGACATTGATGTTTTTCTTTTGCCTGGACATCTTTTCTT
1 AAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTTCTTTTGCCTGGAAATCTTTTCTT
* * * * * * *
4257 CACCTTATTTTCTTTAAAATGAAAGTTCATCCCCTGAATAAGACAAGCATCGATTATCCTAATAG
66 CGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGTTTCTCCTAACAG
4322 TCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTG-CTATTGTTAGGATACCCGACATTGA
131 TCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCT-TTGTTAGGATACCCGACATTGA
*
4386 TGCTTTGGTGTCTCAAGAAAAGCTTCTT-TTCACGTCGTTTTTGATAGAATCAACGTTTGTCTCT
195 TGCTTTGGTGTCTCAAGAAAAGCTT-TTCTTCGCGTCGTTTTTGATAGAATCAACGTTTGTCTCT
* * *
4450 TAAATAAGCTGAACATTAATACTCAAACTAATTCTCATTCTTTTTAGATTTAGGCACTATAAACA
259 TAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAAACA
* *
4515 TAGTCTTCTCATTAGGATACACGATATTGATGCTCTGGTTTCGCAACAAAGGCTTTTTTCCCACT
324 TAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTCCCACC
* * * *
4580 AATCATTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATACGGATTCTGGTAATGAACTTCA
389 AATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGAC-AATATGGATTCTAGTAATGATCTTCA
4645 TTCTTTTTCTGATAAAGCACTAC
453 TTCTTTTTC-GATAAAGCACTAC
* *
4668 AAACACATTCTACTCTTTAGGATAAAAGACATTGAAGTTTTTCTTTTGCCTGGAAATCTTTTCTT
1 AAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTTCTTTTGCCTGGAAATCTTTTCTT
* * * *
4733 CGCCCTATTTTCCTTAAACTGAAAGTTCATCCCTTGAATAGGACAAGCATTGATTCTCCTAACAG
66 CGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGTTTCTCCTAACAG
*
4798 TCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGAAGACCCGACATTGA
131 TCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGG-ATACCCGACATTGA
* * *
4863 TGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCATTTTTTATAGAATCAACGTTTGTTTCTT
195 TGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCGTTTTTGATAGAATCAACGTTTGTCTCTT
4928 AAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAAACAT
260 AAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAAACAT
* * * *
4993 AGTCTTTCTCACTAGGATAGACGTTATTGATGCTTTGTGTTT-GCAACAATGGCTTTTTTCCCAC
325 AGTC-TTCTCATTAGGATACACGATATTGATGCTTTG-GTTTCGCAACAAAGGCTTTTTTCCCAC
* *
5057 CAATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGATAGTATGGATTCTAGTAATGATCTTCA
388 CAATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAATATGGATTCTAGTAATGATCTTCA
*
5122 TTCTTTTTCCTATAAAGCACTAC
453 TTCTTTTT-CGATAAAGCACTAC
* * *
5145 ATACACATTCTCCTCTTTAGGACAAAAGACTTTGATGTTTTTCTTTTGCCTGGAAATCTTTTCTT
1 AAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTTCTTTTGCCTGGAAATCTTTTCTT
* * * * *
5210 CGCTCTATTTTCCTTAAAAAGAAAGTTCATCCCATGAAGAAGACAAGCATCGTTTCTCCTAACAA
66 CGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGTTTCTCCTAACAG
* * *
5275 TCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGAAGACCCAACATTGA
131 TCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGG-ATACCCGACATTGA
*
5340 TGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCGTTTTTGATAGAATCAACGTTTGTTTCTT
195 TGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCGTTTTTGATAGAATCAACGTTTGTCTCTT
*
5405 AAATAAGCCGAACATTAATACTCACACTAATCCTCATTCTTTTTAGATTTAGGCACCATAAACAT
260 AAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAAACAT
* * *
5470 AGTCTTCTCATTAGGATAGACGTTATTGATGCTTTGGGTTT-GCAACAATGGCTTTTTTCCCACC
325 AGTCTTCTCATTAGGATACACGATATTGATGCTTT-GGTTTCGCAACAAAGGCTTTTTTCCCACC
* * *
5534 AATCGTTGTAAAGACTAAGTTCGTGCCTCAAATGAGATAGTATGGATTCTAGTAATGATCTTCAT
389 AATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAATATGGATTCTAGTAATGATCTTCAT
*
5599 TCTTTTTCCTATAAAGCACTAC
454 TCTTTTT-CGATAAAGCACTAC
* *
5621 ATACACATTCTCCTCTTTAGGACAAAAGACTTTGAAGTTTTTCTTTTGCCTGGAAATCTTTTCTT
1 AAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTTCTTTTGCCTGGAAATCTTTTCTT
* * *
5686 CGCTCTATTTTCCTTAAAATGAAAGTTCATCCCATGAATAAGACAAGCATCGTTTCTCCTAACAA
66 CGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGTTTCTCCTAACAG
*
5751 TCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCGACATTGAT
131 TCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCGACATTGAT
*
5816 GCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCGTTTTTAATAGAATCAACGTTTGTCTCTTA
196 GCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCGTTTTTGATAGAATCAACGTTTGTCTCTTA
* *
5881 AATATGCCGAACATTAATACTCAAACTAATCCTTATTCTTTTTAGATTTAGGCACCATAAACATA
261 AATAAGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAAACATA
* * *
5946 GTTTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCACAACAAAAGCTTTTTTCCCACCAA
326 GTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTCCCACCAA
* *
6011 TCGTTCTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGTAATAATCTTCATT
391 TCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGAC-AATATGGATTCTAGTAATGATCTTCATT
6076 CTTTTTCCGATAAAGCACTAC
455 CTTTTT-CGATAAAGCACTAC
* *
6097 AAACACATTCTACTCTTTAGGATAAAAGACATTGAAGTTTTTCTTTTGCCTGGAAATCTTTTCTT
1 AAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTTCTTTTGCCTGGAAATCTTTTCTT
* *
6162 CGCCCTATTTTCCTTAAACTGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCCTAACAG
66 CGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGTTTCTCCTAACAG
* *
6227 TCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGCTAGGAGACCCGACATTGAT
131 TCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCGACATTGAT
* *
6292 GCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGTGTCGTTTTTGATAGAATCAACGTTTGTTTCTTA
196 GCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCGTTTTTGATAGAATCAACGTTTGTCTCTTA
*
6357 AATAAGTCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAAACATA
261 AATAAGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAAACATA
* *** *
6422 GTCTTCTGATTAGGATTGGCGATATTGATGCTTTGGGTTT-GCAACAATGGCTTTTTTCCCACCA
326 GTCTTCTCATTAGGATACACGATATTGATGCTTT-GGTTTCGCAACAAAGGCTTTTTTCCCACCA
* * * * *
6486 ATGGTTGTAAAGACTAAGTTCGTGCCTCAAATAAGATAGTATGGATTCTAGTAATGATCTTCATT
390 ATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAATATGGATTCTAGTAATGATCTTCATT
*
6551 CTTTTTCCTATAAAGCACTAC
455 CTTTTT-CGATAAAGCACTAC
* * *
6572 ATACATATTCTCCTCTTTAGGACAAAAGACTTTGAAGTTTTTCTTTTGCCTGGAAATCTTTTCTT
1 AAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTTCTTTTGCCTGGAAATCTTTTCTT
** * *
6637 CGCTGTATTTTCCTTAAAATGAAAGTTCATCCCATGAATAAGACAAGCATCGTTTCTCCTAACAA
66 CGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGTTTCTCCTAACAG
*
6702 TCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCGACATTGAT
131 TCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCGACATTGAT
* *
6767 GCTCTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCGTTTTTAATAGAATCAACGTTTGTCTCTTA
196 GCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCGTTTTTGATAGAATCAACGTTTGTCTCTTA
* *
6832 AATATGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACTATAAACATA
261 AATAAGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAAACATA
* * *
6897 GTTTTCTCATTAAGATACACGATATTGATGCTTTGGTTTCGCAACAAAAGCTTTTTTCCCACCAA
326 GTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTCCCACCAA
* *
6962 TCGTTCTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGTAATAATCTTCATT
391 TCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGAC-AATATGGATTCTAGTAATGATCTTCATT
7027 CTTTTTCTGATAAAGCACTAC
455 CTTTTTC-GATAAAGCACTAC
* *
7048 AAACACATTCTCCTTTTTAGGACAAAAGACATTAAAGTTTTTCTTTTGCCTGGAAATCTTTTCTT
1 AAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTTCTTTTGCCTGGAAATCTTTTCTT
* *
7113 CGCCCTATTTTCCTTAAAAATGAAAGTTCATCCCTTGAATAAGACAAACATCGATTCTCCTAACA
66 CGCCCTATTTTCCTT-AAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGTTTCTCCTAACA
* * *
7178 GTCTCCTTTCTTTTCAACATTGGGATGCCAAAACACATTGCCTTTGTTAGGATACCCGATATTGA
130 GTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCGACATTGA
* *
7243 TGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCATTTTTGATAGAATCAACGTTTGTTTCTT
195 TGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCGTTTTTGATAGAATCAACGTTTGTCTCTT
* ** * *
7308 AAATAAGCTGAATTTTAATACTCAAACTAATCCTCATTCTTTTTAAATTTAGGCACCATAAACCT
260 AAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAAACAT
*** * * *
7373 AGTCTTCTCATTAGGATTGGCGACATTGATGCTTTGGTTTTGCAACAAAAGCTTTTTTCCCACCA
325 AGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTCCCACCA
* *
7438 ATCGTTGTAAAGTCTAAGTTCATGCCTCAAATGAAACAATATGGATTCTAGTAATGATCTTCATT
390 ATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAATATGGATTCTAGTAATGATCTTCATT
* * *
7503 CTTATTCTAGTAAAGCACTAT
455 CTTTTTCGA-TAAAGCACTAC
* *
7524 AAACACATTCTCCTCTTTGGGACAAAAGACTTTGAAGTTTTTCTTTTGCCTGGAAATCTTTTCTT
1 AAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTTCTTTTGCCTGGAAATCTTTTCTT
* * * *
7589 CGCTCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGAATCATTTCTCCTTACAG
66 CGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGTTTCTCCTAACAG
* * * * * * *
7654 TCTCTTTTATTTTCAAGATTGGGAAGCGAAAACACATTGCCTTTGTTAGTATATCCAACAGTGAT
131 TCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCGACATTGAT
* * *
7719 GCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGTGTCATTTTTGATAGAATCAACGTTTGTTTCTTA
196 GCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCGTTTTTGATAGAATCAACGTTTGTCTCTTA
* ** * *
7784 AATAAGCTGAATTTTAATACTCAAACTAAGCCTCATTCTTTTTAAATTTAGGCACCATAAACA
261 AATAAGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAAACA
7847 CATTCTCCTT
Statistics
Matches: 5960, Mismatches: 507, Indels: 79
0.91 0.08 0.01
Matches are distributed among these distances:
473 190 0.03
474 441 0.07
475 1801 0.30
476 2425 0.41
477 1013 0.17
478 86 0.01
479 4 0.00
ACGTcount: A:0.29, C:0.20, G:0.14, T:0.36
Consensus pattern (474 bp):
AAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTTCTTTTGCCTGGAAATCTTTTCTT
CGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGTTTCTCCTAACAG
TCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCGACATTGAT
GCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCGTTTTTGATAGAATCAACGTTTGTCTCTTA
AATAAGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAAACATA
GTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTCCCACCAA
TCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAATATGGATTCTAGTAATGATCTTCATTC
TTTTTCGATAAAGCACTAC
Found at i:4045 original size:951 final size:951
Alignment explanation
Indices: 865--23771 Score: 20650
Period size: 951 Copynumber: 24.2 Consensus size: 951
855 TAGGCACCAT
* *
865 AAACACATTCTCCT-TTTATGACAAAAGACATTAAAGTTTTTCTTTTGCCTGGAAATCTTTTCTT
1 AAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTTCTTTTGCCTGGAAATCTTTTCTT
*
929 CGCCCTATTTTCCTTAAAAATGAAAGTTCATCCCTTGAATAAGACAAACATCGATTCTCCCT-AC
66 CGCCCTATTTTCCTT-AAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT-CCTAAC
* * * *
993 AGTCTTCCTTTCTTTTCAACATTGGGATGCCAAAACACTTTGCCTTTGTTAGGATACCCGATATT
129 AGTC-TCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCGACATT
* *
1058 GATGCTTTGGTGTCTCAAG-AAAGCTTTTCTTCGCGTCATTTTTGATAGAATCAACGTTTGTTTC
193 GATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCCTTTTTGATAGAATCAACGTTTGTCTC
*
1122 TTAAATAAGCCGAACTTTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAAAC
258 TTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAAAC
* * * * **
1187 TTAGTCTTCTCATTAGGATACACGATATTGACGCTCTGGTTTCGCAACTAAGGCTTACTTCCCAC
323 ATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTCCCAC
* * *
1252 CAATCCTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGAAAAATATGTATTCTAGTAATGATCTTC
388 CAATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTC
* * ** *
1317 ATTCTTTTTCTGATAAAGCACTATAAACACATTCTCCTGATTAGGACAAGAGACATTGAAGTTTT
453 ATTCTTTTTCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTT
*
1382 TCTTTTTCC-GAGAAATCTTTTCTTCGCCTTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATA
518 TCTTTTGCCTG-GAAATCTTTTCTTCGCC-TATTTTCCTTAAAATGAAAGTTCATCCCTTGAATA
* * * * *
1446 AGACAAGAATC-ATTTCTCCTTACAGTCTCTTTTATTTTCAAGATTGGGAAGCGAAAAACACATT
581 AGACAAGCATCGA-TTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGC-CAAAACACATT
* * * * * *
1510 GCCTTTGTTAGTATACCCAACAGTGATGCTTTAGTGTCTCAAGAAAAGCTTTTCTTCGCATCGTT
644 GCCTTTGTTAGGATACCCGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCATT
* *
1575 TTTAATAGAATCAACGTTTGTCTCTTAAATATGCCGAACATTAATACTCAAACTAATCCTCATTC
709 TTTGATAGAATCAACGTTTGTCTCTTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTC
* * * *
1640 TTTTTAGATATAGGCACCATAAACTTAGTCATCTCATTAGGATACACAATATTGATGCTTTGG-T
774 TTTTTAGATTTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTT
1704 TCGCAACAAAGGC-TTTTTCCCACCAATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGAC-A
839 TCGCAACAAAGGCTTTTTTCCCACCAATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAA
* *
1767 ATATGGATTCTAGTAATGATCTTCATTCTTTTTTCGATAAAGTACTAT
904 ATATGGATTCTAGTAATGATCTTCATTCTTTTTTCGATAAAGCACTAC
* * *
1815 AAACACATTCTCCTCTTTGGGGCAAAAGACTTTGAAGTTTTTCTTTTGCCTGGAAATCTTTTCTT
1 AAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTTCTTTTGCCTGGAAATCTTTTCTT
* * * * *
1880 CGCTCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAAGAAGACAAGCATCGTTTCTTCTAACTG
66 CGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCCTAACAG
*
1945 TCCCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCGACATTGAT
131 TCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCGACATTGAT
* * *
2010 GCTTTGGTGTCTCGAGAAAAGCTTTTCTTGGCATCCTTTTTGATAGAATCAACGTTTGTCTCTTA
196 GCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCCTTTTTGATAGAATCAACGTTTGTCTCTTA
* *
2075 AATAAGCCGAACTTTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAAACTTA
261 AATAAGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAAACATA
* * * * * *
2140 GTCTTCTCATTAGGATACACGATATTGACGCTCTGGTTTCGCAACTAAGGGTTTCTTCCCTCCAA
326 GTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTCCCACCAA
* *
2205 TCCTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGTATTCTAGTAATGATCTTCATT
391 TCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATT
* * * ** *
2270 CTTTTTCTGATAAAGCGCTATAAACACATTCTCCTGATTAGGACAAGAGACATTGAAGTTTTTCT
456 CTTTTTCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTTCT
* *
2335 TTTTCC-GAGAAATCTTTTCTTCGCCTTATTTTCCTTAAAATGAAAGTTCATCTCTTGAATAAGA
521 TTTGCCTG-GAAATCTTTTCTTCGCC-TATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGA
* * ** *
2399 CAAGAATC-ATTTCTCCTTACAGTCTTTTTTCTTTTCAAGATTGGGAAGCGAAAACACATTGCCT
584 CAAGCATCGA-TTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCT
* * * * * *
2463 TTGTTAGTATACCCAACATTGATGCTTTAGTGTCT-AAGAAAAGCTTTTCTTCGCATCGTTTTTA
648 TTGTTAGGATACCCGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCATTTTTG
* *
2527 ATAGAATCAATGTTTGTCTCTTAAATATGCCGAACATTAATACTCAAACTAATCCTCATTCTTTT
713 ATAGAATCAACGTTTGTCTCTTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCTTTT
* * *** * *
2592 TAAATTTAGGCACCATAAACATAGTCCTCTCATTAGGATTGGCGATAGTGATGCTTTGGTTTTGC
778 TAGATTTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGC
* *
2657 AACAAAGGATTTTTTTCCCACCAATCGTTGTAAAGTCTAAGTTCGTGCCACAAATGAGAC-AATA
843 AACAAAGG-CTTTTTTCCCACCAATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATA
*
2721 TGGATTCTAGCAATGATCTTCATTC-TTTTTCGATAAAGCACTAC
907 TGGATTCTAGTAATGATCTTCATTCTTTTTTCGATAAAGCACTAC
* * * * **
2765 AAACACATTCTCATCTTTAGGACAAAAGACTTTGAAGTTTTTCTTTTTCTTATAAATCTTTTCTT
1 AAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTTCTTTTGCCTGGAAATCTTTTCTT
* * * * * *
2830 TGCACTATTTTCCTTAAAATGAAGGTTCTTCCCTTGAATAAGACAAGCATCGTTTCTCCTAACAA
66 CGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCCTAACAG
* *
2895 TCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTG-CTATTGTTAGCATACTCGACATTGA
131 TCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCT-TTGTTAGGATACCCGACATTGA
* *
2959 TGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCACGTCGTTTTTGATAGAATCAACGTTTGTCTCTT
195 TGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCCTTTTTGATAGAATCAACGTTTGTCTCTT
* * *
3024 AAAAAAGCCGAACTTTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAAACTT
260 AAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAAACAT
* *
3089 AGTCTTCTCATTAGGATACACGATATTGATGCTCTGGTTTCGCAACAAAGGTTTTTTTCCCACCA
325 AGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTCCCACCA
* * *
3154 ATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACACGGATTCTAGTAATGAACTTCAT
390 ATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCAT
* *
3219 TCTTTTCCCGATAAAGCACTACAAACACATTCTCCTCTTTGGGACAAAAGACATTGAAGTTTTTC
455 TCTTTTTCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTTC
* *
3284 TTTTGCCTGGAAATCTTTTCTTCTCCATATTTTGCTTAAAATGAAAGTTCATCCCTTGAATAAGA
520 TTTTGCCTGGAAATCTTTTCTTCGCC-TATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGA
* * * *
3349 CAAGCATCGATTCTCCTAATAGTCTCCATTCTTTTCAGGATTGGGAAGCTAAAACACATTGCCTT
584 CAAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTT
** * * * * *
3414 CATTTGCATACACAACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGTGTCATTTTTGA
649 TGTTAGGATACCCGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCATTTTTGA
* * * * *
3479 TAGAATTAACGTTTGTCTCTTAAAAAAGCCAAACATTAATACTCAAACTAATACTCATTCCTTTT
714 TAGAATCAACGTTTGTCTCTTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTT
* *
3544 AGATTTAGGCACCATAAACATAGTCTTCTCGTTAGGATACACGATATTGATGCTTTGGTTTCACA
779 AGATTTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCA
*
3609 ACAAAGGCTTTCTTCCCACCAATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGAC-AATATG
844 ACAAAGGCTTTTTTCCCACCAATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATG
*
3673 GATTCTAGTAATGATCTTCATTCTTTTTTCGATAAAGTACTAC
909 GATTCTAGTAATGATCTTCATTCTTTTTTCGATAAAGCACTAC
* *
3716 AAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTTCTTTTGCATGGTAATCTTTTCTT
1 AAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTTCTTTTGCCTGGAAATCTTTTCTT
* *
3781 TGCCCTATTTTCCCTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCCTAACAG
66 CGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCCTAACAG
* * * * *
3846 TCTCTTTTCTTTTCAACAATGGGAAGCCAAAACACATTG-CTACTGATAGGATACCCGACATTGA
131 TCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCT-TTGTTAGGATACCCGACATTGA
* * * * *
3910 TGCTTTGGAGTCTCGAGAAAACCTTTTCTTGGCATCCTTTTTGATAGAATCAACGTTTGTCTCTT
195 TGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCCTTTTTGATAGAATCAACGTTTGTCTCTT
*
3975 AAATAAGCTGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAAACAT
260 AAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAAACAT
* * *
4040 AGTCTTCTCATTAGGATACACGATATTGATGCTCTGGTTTCACAACAAAGGCTTTTTTCCCACTA
325 AGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTCCCACCA
* *
4105 ATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATACGGATTCTAGTAATGAACTTCAT
390 ATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCAT
** *
4170 TCTTTTTCTAATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGATGTTTTTC
455 TCTTTTTCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTTC
* * * *
4235 TTTTGCCTGGACATCTTTTCTTCACCTTATTTTCTTTAAAATGAAAGTTCATCCCCTGAATAAGA
520 TTTTGCCTGGAAATCTTTTCTTCGCC-TATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGA
* *
4300 CAAGCATCGATTATCCTAATAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTG-CTA
584 CAAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCT-
* *
4364 TTGTTAGGATACCCGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTCTT-TTCACGTCGTTTTT
648 TTGTTAGGATACCCGACATTGATGCTTTGGTGTCTCAAGAAAAGCTT-TTCTTCGCGTCATTTTT
* *
4428 GATAGAATCAACGTTTGTCTCTTAAATAAGCTGAACATTAATACTCAAACTAATTCTCATTCTTT
712 GATAGAATCAACGTTTGTCTCTTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCTTT
* *
4493 TTAGATTTAGGCACTATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTCTGGTTTCG
777 TTAGATTTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCG
* *
4558 CAACAAAGGCTTTTTTCCCACTAATCATTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATA
842 CAACAAAGGCTTTTTTCCCACCAATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATA
* * *
4623 CGGATTCTGGTAATGAACTTCATTC-TTTTTCTGATAAAGCACTAC
907 TGGATTCTAGTAATGATCTTCATTCTTTTTTC-GATAAAGCACTAC
* *
4668 AAACACATTCTACTCTTTAGGATAAAAGACATTGAAGTTTTTCTTTTGCCTGGAAATCTTTTCTT
1 AAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTTCTTTTGCCTGGAAATCTTTTCTT
* * *
4733 CGCCCTATTTTCCTTAAACTGAAAGTTCATCCCTTGAATAGGACAAGCATTGATTCTCCTAACAG
66 CGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCCTAACAG
*
4798 TCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGAAGACCCGACATTGA
131 TCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGG-ATACCCGACATTGA
* * *
4863 TGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCATTTTTTATAGAATCAACGTTTGTTTCTT
195 TGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCCTTTTTGATAGAATCAACGTTTGTCTCTT
4928 AAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAAACAT
260 AAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAAACAT
* * * *
4993 AGTCTTTCTCACTAGGATAGACGTTATTGATGCTTTGTGTTT-GCAACAATGGCTTTTTTCCCAC
325 AGTC-TTCTCATTAGGATACACGATATTGATGCTTTG-GTTTCGCAACAAAGGCTTTTTTCCCAC
* *
5057 CAATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGA-TAGTATGGATTCTAGTAATGATCTTC
388 CAATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTC
* * * *
5121 ATTCTTTTTCCTATAAAGCACTACATACACATTCTCCTCTTTAGGACAAAAGACTTTGATGTTTT
453 ATTCTTTTTCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTT
* * *
5186 TCTTTTGCCTGGAAATCTTTTCTTCGCTCTATTTTCCTTAAAAAGAAAGTTCATCCCATGAAGAA
518 TCTTTTGCCTGGAAATCTTTTCTTCGC-CTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAA
* * *
5251 GACAAGCATCGTTTCTCCTAACAATCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTGCC
582 GACAAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCC
* * *
5316 TTTGTTAGGAAGACCCAACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCGTTTT
647 TTTGTTAGG-ATACCCGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCATTTT
* *
5381 TGATAGAATCAACGTTTGTTTCTTAAATAAGCCGAACATTAATACTCACACTAATCCTCATTCTT
711 TGATAGAATCAACGTTTGTCTCTTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCTT
* *
5446 TTTAGATTTAGGCACCATAAACATAGTCTTCTCATTAGGATAGACGTTATTGATGCTTTGGGTTT
776 TTTAGATTTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTT-GGTTT
* * * *
5511 -GCAACAATGGCTTTTTTCCCACCAATCGTTGTAAAGACTAAGTTCGTGCCTCAAATGAGA-TAG
840 CGCAACAAAGGCTTTTTTCCCACCAATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAA
* *
5574 TATGGATTCTAGTAATGATCTTCATTCTTTTTCCTATAAAGCACTAC
905 TATGGATTCTAGTAATGATCTTCATTCTTTTTTCGATAAAGCACTAC
* *
5621 ATACACATTCTCCTCTTTAGGACAAAAGACTTTGAAGTTTTTCTTTTGCCTGGAAATCTTTTCTT
1 AAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTTCTTTTGCCTGGAAATCTTTTCTT
* * * *
5686 CGCTCTATTTTCCTTAAAATGAAAGTTCATCCCATGAATAAGACAAGCATCGTTTCTCCTAACAA
66 CGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCCTAACAG
*
5751 TCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCGACATTGAT
131 TCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCGACATTGAT
* *
5816 GCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCGTTTTTAATAGAATCAACGTTTGTCTCTTA
196 GCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCCTTTTTGATAGAATCAACGTTTGTCTCTTA
* *
5881 AATATGCCGAACATTAATACTCAAACTAATCCTTATTCTTTTTAGATTTAGGCACCATAAACATA
261 AATAAGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAAACATA
* * *
5946 GTTTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCACAACAAAAGCTTTTTTCCCACCAA
326 GTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTCCCACCAA
* *
6011 TCGTTCTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGTAATAATCTTCATT
391 TCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATT
* *
6076 CTTTTTCCGATAAAGCACTACAAACACATTCTACTCTTTAGGATAAAAGACATTGAAGTTTTTCT
456 CTTTTTCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTTCT
*
6141 TTTGCCTGGAAATCTTTTCTTCGCCCTATTTTCCTTAAACTGAAAGTTCATCCCTTGAATAAGAC
521 TTTGCCTGGAAATCTTTTCTTCG-CCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGAC
6206 AAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTT
585 AAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTT
* * * *
6271 GCTAGGAGACCCGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGTGTCGTTTTTGAT
650 GTTAGGATACCCGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCATTTTTGAT
* *
6336 AGAATCAACGTTTGTTTCTTAAATAAGTCGAACATTAATACTCAAACTAATCCTCATTCTTTTTA
715 AGAATCAACGTTTGTCTCTTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTA
* ***
6401 GATTTAGGCACCATAAACATAGTCTTCTGATTAGGATTGGCGATATTGATGCTTTGGGTTT-GCA
780 GATTTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTT-GGTTTCGCA
* * * * * *
6465 ACAATGGCTTTTTTCCCACCAATGGTTGTAAAGACTAAGTTCGTGCCTCAAATAAGA-TAGTATG
844 ACAAAGGCTTTTTTCCCACCAATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATG
* *
6529 GATTCTAGTAATGATCTTCATTCTTTTTCCTATAAAGCACTAC
909 GATTCTAGTAATGATCTTCATTCTTTTTTCGATAAAGCACTAC
* * *
6572 ATACATATTCTCCTCTTTAGGACAAAAGACTTTGAAGTTTTTCTTTTGCCTGGAAATCTTTTCTT
1 AAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTTCTTTTGCCTGGAAATCTTTTCTT
** * * *
6637 CGCTGTATTTTCCTTAAAATGAAAGTTCATCCCATGAATAAGACAAGCATCGTTTCTCCTAACAA
66 CGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCCTAACAG
*
6702 TCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCGACATTGAT
131 TCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCGACATTGAT
* * *
6767 GCTCTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCGTTTTTAATAGAATCAACGTTTGTCTCTTA
196 GCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCCTTTTTGATAGAATCAACGTTTGTCTCTTA
* *
6832 AATATGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACTATAAACATA
261 AATAAGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAAACATA
* * *
6897 GTTTTCTCATTAAGATACACGATATTGATGCTTTGGTTTCGCAACAAAAGCTTTTTTCCCACCAA
326 GTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTCCCACCAA
* *
6962 TCGTTCTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGTAATAATCTTCATT
391 TCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATT
* * *
7027 CTTTTTCTGATAAAGCACTACAAACACATTCTCCTTTTTAGGACAAAAGACATTAAAGTTTTTCT
456 CTTTTTCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTTCT
7092 TTTGCCTGGAAATCTTTTCTTCGCCCTATTTTCCTTAAAAATGAAAGTTCATCCCTTGAATAAGA
521 TTTGCCTGGAAATCTTTTCTTCG-CCTATTTTCCTT-AAAATGAAAGTTCATCCCTTGAATAAGA
* * *
7157 CAAACATCGATTCTCCTAACAGTCTCCTTTCTTTTCAACATTGGGATGCCAAAACACATTGCCTT
584 CAAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTT
*
7222 TGTTAGGATACCCGATATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCATTTTTGA
649 TGTTAGGATACCCGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCATTTTTGA
* * **
7287 TAGAATCAACGTTTGTTTCTTAAATAAGCTGAATTTTAATACTCAAACTAATCCTCATTCTTTTT
714 TAGAATCAACGTTTGTCTCTTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTT
* * *** * *
7352 AAATTTAGGCACCATAAACCTAGTCTTCTCATTAGGATTGGCGACATTGATGCTTTGGTTTTGCA
779 AGATTTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCA
* * *
7417 ACAAAAGCTTTTTTCCCACCAATCGTTGTAAAGTCTAAGTTCATGCCTCAAATGAAAC-AATATG
844 ACAAAGGCTTTTTTCCCACCAATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATG
* * *
7481 GATTCTAGTAATGATCTTCATTC-TTATTCTAGTAAAGCACTAT
909 GATTCTAGTAATGATCTTCATTCTTTTTTCGA-TAAAGCACTAC
* *
7524 AAACACATTCTCCTCTTTGGGACAAAAGACTTTGAAGTTTTTCTTTTGCCTGGAAATCTTTTCTT
1 AAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTTCTTTTGCCTGGAAATCTTTTCTT
* * *
7589 CGCTCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGAATC-ATTTCTCCTTACA
66 CGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGA-TTCTCCTAACA
* * * * * * *
7653 GTCTCTTTTATTTTCAAGATTGGGAAGCGAAAACACATTGCCTTTGTTAGTATATCCAACAGTGA
130 GTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCGACATTGA
* * *
7718 TGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGTGTCATTTTTGATAGAATCAACGTTTGTTTCTT
195 TGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCCTTTTTGATAGAATCAACGTTTGTCTCTT
* ** * * *
7783 AAATAAGCTGAATTTTAATACTCAAACTAAGCCTCATTCTTTTTAAATTTAGGCACCATAAACAC
260 AAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAAACAT
* * ** * * * * * * * * ** * *** *
7848 ATTCTCCTTTTTATGACAAAAGACATTAAAGTTTTTCTTTTGCCTGGAAA-TCTTTTCTTCGCC-
325 AGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCG-CAACAAAGGCTTTT-TTC-CCA
* * * * * ** * * ** * * * ** *
7911 CTATTTTCCTT-AAAAATGAAAGTTCATCCCTTGAATAAGACAAACATCGATTCTCCTAA-CAGT
387 CCA--ATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGA-T
* * * * * * *** *
7974 CTCCTTTC-TTTTCAAC-ATTGGGATGC-C-A-AAACAC-TT-TGCCTTTGTTAGGATACCCGAT
449 CTTCATTCTTTTTC--CGA-T--AAAGCACTACAAACACATTCT-CCTCT-TTAGGACAAAAGAC
* * ** * ** * * * *** * * * **
8032 ATTGATGCTTTGGTGTCT-CAAGAAAAGCTTTTCTTCGCGTCATTTTTGATAGAATCAACGTTTG
507 ATTGAAGTTTTTCT-TTTGCCTGGAAATCTTTTCTTCGCCT-ATTTTCCTTAAAATGAAAGTTCA
** * * * ** * * * * * * *
8096 TTTCTTAAATAAGCCGAA-CTTTAATACT-CAAACTAATC-CTCATTCTTTT-TAGATTTAGGCA
570 TCCCTTGAATAAGAC-AAGCATCGATTCTCCTAAC-AGTCTC-CTTTCTTTTCAAGA-TTGGGAA
* * * * * * * * * ** *
8157 -CCATAA-AC-TTAGTCTTCTCATTAGGATACACGATATTGACGCTCTGGTTTCGCAACTAAGGC
631 GCCAAAACACATT-GCCTT-T-GTTAGGATACCCGACATTGATGCTTTGGTGTCTCAAGAAAAGC
* * ** ** * * * *** *
8219 -TTACTTCCCACCAATCCTTG-TA-AAGTCTAA-GTTCGTGC-CTCAAATGAGAAAAATATGT-A
693 TTTTCTTCGCGTC-ATTTTTGATAGAA-TC-AACGTTTGT-CTCTTAAATAAGCCGAACAT-TAA
* * * * * * * * * * *
8278 TTCT-AGTAA-TGATCTTCATTCTTTTTCTGA-TAAAGCACTATAAACACATTCTCCTGATTAGG
753 TACTCA--AACTAATCCTCATTCTTTTT-AGATTTAGGCACCATAAACATAGTCTTCTCATTAGG
* * * * * ** * * * * ** * *
8340 ACA-AGAGACATTGAAGTTTTTCTTTTTC-CGAGAAA-TCTTTTCTTCGC-CTTAT-TTTCCTTA
815 ATACA-CGATATTGATG-CTTT-GGTTTCGCAACAAAGGCTTTT-TTCCCACCAATCGTT--GTA
* ** * * ** * * **
8400 AAATGAAAGTTCATCCCTTGAATAAGACAAGA-AT-CATTTCTCCTTACA-G-TC-TC-TT-TTA
874 AAGTCTAAGTTCGTGCCTCAAATGAGACAA-ATATGGA-TTCT-AGTA-ATGATCTTCATTCTT-
*** * *
8458 TTTTCAAGATTGGGAAGCGA-
934 TTTTC--GATAAAGCA-CTAC
* * * * ** * * * ** * ** * *
8478 AAACACATT-GCCTTTGTTAGTATACCCA-ACAGTGATGCTTTAGTGTCT-CAAGAAAAGCTTTT
1 AAACACATTCTCCTCT-TTAGGACA-AAAGACATTGAAGTTTTTCT-TTTGCCTGGAAATCTTTT
* ** * * * ** * * * * ** *
8540 CTTCGCATCGT-TTTT-AATAGAATCAACGTTTGTCTCTTAAATATGCCGAA-CATTAATACT-C
63 CTTCGC--CCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGAC-AAGCATCGATTCTCC
* * * * * * * * **
8601 AAACTAATC-CTCATTCTTTT-TAGATATAGGCA-CCATAA-AC-TTAGTCATCTCATTAGGATA
125 TAAC-AGTCTC-CTTTCTTTTCAAGAT-TGGGAAGCCAAAACACATT-G-CCT-TTGTTAGGATA
* * * * * * * ** **
8661 CACAATATTGATGCTTTGGTTTCGCAACAAAGGCTTTT-TTC-CCACCAATCGTTG-TA-AAGTC
184 CCCGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCC--TTTTTGATAGAA-TC
* * * * * ** * * * *
8722 TAA-GTTCGTGC-CTCAAATGAGAC-AATATGGATTCT-AGTAA-TGATCTTCATTCTTTTTTCG
246 -AACGTTTGT-CTCTTAAATAAGCCGAACATTAATACTCA--AACTAATCCTCATTC-TTTTTAG
* * * * * * * * * ** * * * * ** * *
8782 A-TAAAGTACTATAAACACATTCTCCTCTTTGGGGCAAAAGACT-TTGAAGTTTTTCTTTTGCCT
306 ATTTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGA-TATTGATGCTTTGGTTTCG-CA
** * * * * * * * ** * * ** * **
8845 GGAAA-TCTTTTCTTCGC-TCTAT-TTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGC
369 ACAAAGGCTTTT-TTCCCACCAATCGTT--GTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAAT
* * ** * ** * *** * * *
8907 ATCGTTTCTTCTAA-CAGTCCCCTTTCTTTTAAAGATTGGGAAGC-C-A-AAACACATT-GCCTT
431 ATGGATTCTAGTAATGA-TCTTCATTCTTTTTCCGA-T--AAAGCACTACAAACACATTCTCCTC
* *** * * ** * ** * * * * * **
8967 TGTTAGGATACCCGACATTGATGCTTTGGTGTCT-CGAGAAAAGCTTTTCTTGGCATCCTTTTTG
492 T-TTAGGACAAAAGACATTGAAGTTTTTCT-TTTGCCTGGAAATCTTTTCTTCGCCT-ATTTTCC
* * * * ** * * * * * * ** * * * *
9031 ATAGAATCAACGTTTGTCTCTTAAAAAAGCCAAACTTTAATACT-CAAACTAATC-CTCATTCTT
554 TTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCCTAAC-AGTCTC-CTTTCTT
* * * * * * * * * * *
9094 TT-TAGATTTAGGCA-CCATAA-AC-TTAGTCTTCTCATTAGGATACACGATATTGACGCTCTAG
617 TTCAAGA-TTGGGAAGCCAAAACACATT-GCCTT-T-GTTAGGATACCCGACATTGATGCTTTGG
* * ** * * ** ** * *
9155 TTTCGCAACTAAGGC-TTTCTTCCCACCAATCCTTG-TA-AAGTCTAA-GTTCGTGC-CTCAAAT
678 TGTCTCAAGAAAAGCTTTTCTTCGCGTC-ATTTTTGATAGAA-TC-AACGTTTGT-CTCTTAAAT
* * * * * * * * * *
9215 GAGACAAATATGT-ATTCT-AGTAA-TGATCTTCATTCTTTTTCTGA---A-GCACTATAAACAC
739 AAGCCGAACAT-TAATACTCA--AACTAATCCTCATTCTTTTT-AGATTTAGGCACCATAAACAT
* * * * * * * * ** * * * *
9273 ATTCTCCTGATTAGGACA-AGAGACATTGAAGTTTTTCTTTTTC-CGAGAAA-TCTTTTCTTCGC
800 AGTCTTCTCATTAGGATACA-CGATATTGATG-CTTT-GGTTTCGCAACAAAGGCTTTT-TTCCC
** * * * ** * * ** * * **
9335 -CTTAT-TTTCCTTAAAATAAAAGTTCATCCCTTGAATAAGACAAGA-AT-CATTTCTCCTTACA
861 ACCAATCGTT--GTAAAGTCTAAGTTCGTGCCTCAAATGAGACAA-ATATGGA-TTCT-AGTA-A
*** * *
9396 -G-TC-TC-TT-TTATTTTCAAGATTGGGAAGCGA-
920 TGATCTTCATTCTT-TTTTC--GATAAAGCA-CTAC
* * * * ** * * * ** * * *
9426 AAACACATT-GCCTTTGTTAGTATACCCA-ACAGTGATG-CTTTAGTGT-CTCAGGAAAAGCTTT
1 AAACACATTCTCCTCT-TTAGGACA-AAAGACATTGAAGTTTTTCTTTTGC-CTGG-AAATCTTT
* ** * * ** ** * * * * ** *
9487 TCTTCGCATCGT-TTTT-AATAGAATCAGCGTTTGTCTCTTAAATATGCCGAA-CATTAATACT-
62 TCTTCGC--CCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGAC-AAGCATCGATTCTC
* * * * * * * * *
9548 CAAACTAATC-CTCATTCTTTT-TAGATTTAGGCA-CCATAA-AC-TTAGTCTTCTCATTAGGAT
124 CTAAC-AGTCTC-CTTTCTTTTCAAGA-TTGGGAAGCCAAAACACATT-GCCTT-T-GTTAGGAT
* * * * * * * ** **
9608 ACACAATATTGATGCTTTGGTTTCGCAACAAAGGCTTTT-TTC-CCACCAATCGTTG-TA-AAGT
183 ACCCGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCC--TTTTTGATAGAA-T
* ** * * * ** * * * *
9669 CTAA-GTTCGTGC-CACAAATGAGAC-AATATGGATTCT-AGTAA-TGATCTTCATTCTTTTTCC
245 C-AACGTTTGT-CTCTTAAATAAGCCGAACATTAATACTCA--AACTAATCCTCATTCTTTTT-A
* * * * * * * * * * * * * **
9729 GA-TAAAGCACTACAAACACATTCTCCTGATTAGGACA-AGAGACATTGAAGTTTTTCTTTTTC-
305 GATTTAGGCACCATAAACATAGTCTTCTCATTAGGATACA-CGATATTGATG-CTTT-GGTTTCG
* * * * ** * * * ** * * ** *
9791 CGAGAAA-TCTTTTCTTCGC-CTTAT-TTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAA
367 CAACAAAGGCTTTT-TTCCCACCAATCGTT--GTAAAGTCTAAGTTCGTGCCTCAAATGAGACAA
* * ** * * ** *** **
9853 GA-ATCGTTTCTCCTCACA-G-TC-TC-TTTTCTTTTCAAGAT-TGGCGA-TAGTGATGC-TT-T
429 -ATATGGATTCTAGT-A-ATGATCTTCATTCT-TTTTC-CGATAAAGC-ACTACAAACACATTCT
** ** * *
9909 GGT-TTT--G-C---A-ACA---AAG-GATT-TTTT-CC----CA-C----CAATCG------TT
488 CCTCTTTAGGACAAAAGACATTGAAGTTTTTCTTTTGCCTGGAAATCTTTTC-TTCGCCTATTTT
* * ** * * ** * ** * ** * * *
9945 --GTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGTAA-TGATCTTCATTCT
552 CCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCCTAACAG-TCTCCTTTC-
* * * * *** * **
10007 TTTTC-CGA-T--AAAGCACTACAAACACATTCTCCTTT-TTAGGACAAAAGACATTAAAGTTTT
615 TTTTCAAGATTGGGAAGC-C-A-AAACACATT-GCCTTTGTTAGGATACCCGACATT-GA-TGCT
** * * * *** * * * ** *
10067 TCTTTTGCCTC--G-AAATCTTTTCTTCGC-CCTATTTTCCTTAAAATGAAAGTTCATCTCTTGA
674 T-TGGTGTCTCAAGAAAAGCTTTTCTTCGCGTC-ATTTTTGATAGAATCAACGTTTGTCTCTTAA
* * ** * * * * * * * *
10128 ATAAGACAAACATCGATTCTCCTAAC-AGT-CTCCTTTCTTTTCA-ACATT-GGGATGCCAAAAC
737 ATAAGCCGAACATTAATACT-CAAACTAATCCT-CATTCTTTTTAGA-TTTAGGCA--CCATAA-
* * * * * * * * * *
10189 ACATTGCCTT-T-GTTAGGATACCCGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCG
796 ACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTT-TTCC
** ** * ** * * * * * ** *
10252 CGTC-ATTTTTGATAGAA-TC-AACGTTTGTTTCTTAAGTAAGCCGAATATTAATACTCA--AAC
860 CACCAATCGTTG-TA-AAGTCTAA-GTTCGTGCCTCAAATGAGACAAATATGGATTCT-AGTAA-
* * ** * * * *
10312 TAATCCTCATTC-TTTTTAAATTTAGGCACCAT
920 TGATCTTCATTCTTTTTTCGA-TAAAGCACTAC
* * * ***** * * * ** *** *
10344 AAAC-CTAGTCTTCTCATTAGGATTGGCGATATTGATGCTTTGGTTTTG-CAACAAAGGCTTTT-
1 AAACAC-ATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTTCTTTTGCCTGGAAA-TCTTTTC
* * * * * ** * * ** * * * **
10406 TTCCCACCAATCGTT--GTAAAGTCTAAGTTCGTGCCTCAAATGAGACAA-TATGGATTCTAGTA
64 TTCGC-CCTAT-TTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCCTA
* * * * * * * * * **
10468 A-TGATCTTCATTCTTATTC-TGA-T--AAAGCACTATAAACACATTCTCCTCT-TTGGGACAAA
127 ACAG-TCTCCTTTCTT-TTCAAGATTGGGAAGC-C-A-AAACACATT-GCCTTTGTTAGGATACC
* * * * ** * ** * * ** * * *
10527 AGACTTTGAAGTTTTTCT-TTTGCCTGGAAATCTTTTCTTCGC-T-CTTTTTCCTTAAAATGAAA
186 CGACATTGATGCTTTGGTGTCT-CAAGAAAAGCTTTTCTTCGCGTCCTTTTT-GATAGAATCAAC
** * * * *** * * * * * * *
10589 GTTCATCCCTTGAATAAGAC-AAGCATCGTTTCTTCTAAC-AGTCCCCTTTCTTTTCAAGA-TTG
249 GTTTGTCTCTTAAATAAGCCGAA-CATTAATAC-TCAAACTAATCCTCATTCTTTT-TAGATTTA
* * * * * * * *** *
10651 GGAAGCCATAACACATTGCCTT-T-GTTAGGATACCCGACATTGATGCTTTGGTGTCTTGAGAAA
311 GGCA-CCATAA-ACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAA
** ** * * * * *
10714 -GCTTTTCTTGGCATCC--TTTTTGATAGAA-TC-AACGTTTGT-CTCTTAAATAAGCCGAACT-
374 GGCTTTT-TTCCCA-CCAATCGTTG-TA-AAGTCTAA-GTTCGTGC-CTCAAATGAGAC-AAATA
** * * * * * * * * ** * * *
10772 TTAATACTCA--AACTAATCCTCATTCTTTTT-AGATTTAGGCACCATAAACTTAGTCTTCTCAT
432 TGGATTCT-AGTAA-TGATCTTCATTCTTTTTCCGA-TAAAGCACTACAAACACATTCTCCTCTT
* * * * * * * ** * ** ***
10834 TAGGATACACGATATTGACGCTCTGGTTTCGCAACT--AAGGC-TTTCTTC-CC-ACCAATCCTT
494 TAGGACAAAAGACATTGAAGTTTTTCTTTTGC--CTGGAAATCTTTTCTTCGCCTA-TTTTCC-T
* ** * * ** * ** ** * * *
10894 GTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATAT-GTATTCTAGTAA-TGATCTTCATTCTT
555 -TAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCG-ATTCTCCTAACAG-TCTCCTTTC-T
* * * * * *** * *
10957 TTTC-TGA-T--AAATCGCTATAAACACATT--CTCCTGATTAGGACAAGAGACATTGAAGTTTT
616 TTTCAAGATTGGGAA--GCCA-AAACACATTGCCT-TTG-TTAGGATACCCGACATTGATGCTTT
** * * * * * * * *** * * * ** * *
11016 TCTTTTTC-TGAGAAATCTTTTCTTTGCCTTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATA
676 GGTGTCTCAAGA-AAAGCTTTTCTTCGCGTCATTTTTGATAGAATCAACGTTTGTCTCTTAAATA
* ** * * * * * *
11080 AGACAAGAATCATT--T-CTCCTTAC-AGT-CTCTTTTCTTTTTAAGA-TTGGGAAGCGAAAACA
740 AG-C-CGAA-CATTAATACT-CAAACTAATCCTC-ATTCTTTTT-AGATTTAGGCA-CCATAA-A
* * * * * * * * * * * *
11139 CATTGCCTT-T-GTTAGTATACCCAACATTGATGCTTTAGTGTCTCAAGAAAAGCTTTTCTT--C
797 CATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTT-TTCCC
* * * * * * * ** *
11200 -GC-ATCGTTTTTAATAGAATC-AACGTTTGT-CTCTTAAAT-ATGCCGAACATTAATACTCA--
861 ACCAATCG-TTGTAA-AG--TCTAA-GTTCGTGC-CTCAAATGA-GACAAATATGGATTCT-AGT
* * * * * * *
11258 AACTAATCCTCATTC-TTTTTAGATTTAGGCACCAT
918 AA-TGATCTTCATTCTTTTTTCGA-TAAAGCACTAC
** * * * * * * * * ** * *** *
11293 AAACTTAGTCTTCTCATTAGGATACACA-ATATTGATGCTTTGGTTTAG-CAACAAAGGCTTTT-
1 AAACACATTCTCCTCTTTAGGACA-AAAGACATTGAAGTTTTTCTTTTGCCTGGAAA-TCTTTTC
* * * * * ** * * ** * ** * **
11355 TTCCCACCAATCGTT--GTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGTA
64 TTCGC-CCTAT-TTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCCTA
* * * ** * * * **
11418 A-TGATCTTCATTCTTTTTC-CTA-T--AAAGCACTACAAACACATTCTCCTTT-TTAGGACAAA
127 ACAG-TCTCCTTTC-TTTTCAAGATTGGGAAGC-C-A-AAACACATT-GCCTTTGTTAGGATACC
* * ** ** * * ** * *
11477 AGACATTAAAGTTTTTCTTTTGCCTC--G-AAATCTTTTCTTCGC--CCTATTTTCCTTAAAATG
186 CGACATT-GA-TGCTT-TGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCCT-TTTT-GATAGAATC
* ** * * * ** * * * * * *
11537 AAAGTTCATCCCTTAAATAAGACAAACATCGATTCTCCTAAC-AGT-CTCCTTTCTTTTCA-ACA
246 AACGTTTGTCTCTTAAATAAGCCGAACATTAATACT-CAAACTAATCCT-CATTCTTTTTAGA-T
* * * * * * * * *
11599 TT-GGGATGCCAAAACACATTGCCTT-T-GTTAGGATACCCGACATTGATGCTTTGGTGTCACAA
308 TTAGGCA--CCATAA-ACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAA
* * * ** ** ** * * *
11661 GAAAAGCTTTTCTTCGCGTC-ATTTTTGATAGAA-TC-AACGTTCGTTTCTTAAATAAG-CTGAA
370 CAAAGGCTTTT-TTCCCACCAATCGTTG-TA-AAGTCTAA-GTTCGTGCCTCAAATGAGAC-AAA
** * * * ** * * * * * *
11722 TATTAATACTCA--AACTAATCCTCATTCTTTTT-AAATTTAGGCACCATAAAC-CTAGTCTTCT
430 TATGGATTCT-AGTAA-TGATCTTCATTCTTTTTCCGA-TAAAGCACTACAAACAC-ATTCTCCT
* ***** * * * ** *** * * * *
11783 CATTAGGATTGGCGATATTGATGCTTTGGTTTTG-CAACAAAGGCTTTT-TTCCCACCAATCGTT
491 CTTTAGGACAAAAGACATTGAAGTTTTTCTTTTGCCTGGAAA-TCTTTTCTT--CGCCTAT-TTT
* * ** * ** ** * * * ** * * *
11846 --GTAAATTCTAAGTTCGTAACTCAAATGAGACAA-TATGGATTCTAGTAA-TGATCTTCATTCT
552 CCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCCTAACAG-TCTCCTTTCT
* * * * * * *** * * *
11907 TATTC-TGA-T--AAAGCACTATAAACACATTCTCCTCT-TTGGGACAAAAGACTTTGAAGTTTT
616 T-TTCAAGATTGGGAAGC-C-A-AAACACATT-GCCTTTGTTAGGATACCCGACATTGATGCTTT
** * ** * * *** * * * ** * *
11967 TCT-TTTGCCTGGAAATCTTTTCTTCGC-TCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAAT
676 GGTGTCT-CAAGAAAAGCTTTTCTTCGCGTC-ATTTTTGATAGAATCAACGTTTGTCTCTTAAAT
* *** * * * * * * * * *
12030 AAGAC-AAGCATCGTTTCTTCTAAC-AGTCCCCTTTCTTTTCATGA-TTGGGAAGCCAAAACACA
739 AAGCCGAA-CATTAATAC-TCAAACTAATCCTCATTCTTTTTA-GATTTAGGCA-CCATAA-ACA
* * * * * * * * * *
12092 TTGCCTT-T-GTTAGGATACCCGACATTGATGCTTTGGTGTCTCAAGACAA-GCTTTTCTTCGCG
799 TAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACA-AAGGCTTTT-TTCCCA
* ** * * * * * ** *
12154 TC-ATTTTTGATAGAA-T-TAACGTTTGT-CTCTTAAATAAGCCAAACATTAATACTCA--AACT
862 CCAATCGTTG-TA-AAGTCTAA-GTTCGTGC-CTCAAATGAGACAAATATGGATTCT-AGTAA-T
* * * * * * *
12213 AATAC-TCATTC-CTTTTAGATTTAGGCACCAT
921 GAT-CTTCATTCTTTTTTCGA-TAAAGCACTAC
* * * * * * * * * * ** ** **
12244 AAACATAGTCTTCTCGTTAGGATACATGATATTGATGCTTTGGTTTCACAACT--AAGGC-TTTC
1 AAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTTCTTTTGC--CTGGAAATCTTTTC
* * * * * ** * * ** * * * **
12306 TTCCCACCAATCGTT-GTT-AAGTCTAAGTTCGTGCCTCAAATGAGACAA-TATGGATTCTAGTA
64 TTCGC-CCTAT-TTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCCTA
* * * *** *** * * * * * ** ***
12368 A-TGATCTTCATTCTTTTTTCGATAAAGTA-CTATAAACACATTCTCCTCT-TTGGGGCAAAAGA
127 ACAG-TCTCCTTTCTTTTCAAGATTGGGAAGCCA-AAACACATT-GCCTTTGTTAGGATACCCGA
* * * ** * ** * * ** * * *
12430 CTTTGAAGTTTTTCT-TTTGCCTGGAAATCTTTTCTTCGC-T-CTATTTTCCTTAAAATGAAAGT
189 CATTGATGCTTTGGTGTCT-CAAGAAAAGCTTTTCTTCGCGTCCT-TTTT-GATAGAATCAACGT
** * * * *** * * * * * * *
12492 TCATCCCTTGAATAAGAC-AAGCATCGTTTCTTCTAAC-AGTCCCCTTTCTTTTCAAGA-TTGGG
251 TTGTCTCTTAAATAAGCCGAA-CATTAATAC-TCAAACTAATCCTCATTCTTTT-TAGATTTAGG
* * * * * * * * * * *
12554 AAGCCATAACACATTGCCTT-T-GTTAGGATACCCGACATTGATGCTTTGGTGTCTCGAGAAAAG
313 CA-CCATAA-ACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGG
** ** * * ** * * *
12617 CTTTTCTTGGCATCC--TTTTTGATAGAA-TC-AATGTTTGT-CTCTTAAAAAAGCCGAACT-TT
376 CTTTT-TTCCCA-CCAATCGTTG-TA-AAGTCTAA-GTTCGTGC-CTCAAATGAGAC-AAATATG
* * * * * * * * * ** * * *
12676 AATACTCA--AACTAATCCTCATTCTTTTT-AGATTTAGGCACCATAAACTTAGTCTTCTCATTA
434 GATTCT-AGTAA-TGATCTTCATTCTTTTTCCGA-TAAAGCACTACAAACACATTCTCCTCTTTA
* * * * * * * ** * ** ***
12738 GGATACACGATATTGACGCTCTGGTTTCGCAACT--AAGGC-TTTCTTC-CC-ACCAATCCTTGT
496 GGACAAAAGACATTGAAGTTTTTCTTTTGC--CTGGAAATCTTTTCTTCGCCTA-TTTTCC-T-T
* ** * * * ** * ** ** * * *
12798 AAAGTCTAAGTTCGTGCATCAAATGAGACAAATAT-GTATTCTAGTAA-TGATCTTCATTCTTTT
556 AAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCG-ATTCTCCTAACAG-TCTCCTTTC-TTT
* * * * *** * * **
12861 TC-TGA-T--AAAGCACTATAAACACATT--CTCCTGATTAGGACAAGAGACATTGAAGTTTTTC
618 TCAAGATTGGGAAGC-C-A-AAACACATTGCCT-TTG-TTAGGATACCCGACATTGATGCTTTGG
* * * * * * *** * * * ** * *
12920 TTTTTC-CGAGAAATCTTTTCTTCGCCTTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAG
678 TGTCTCAAGA-AAAGCTTTTCTTCGCGTCATTTTTGATAGAATCAACGTTTGTCTCTTAAATAAG
* ** * * * * * *
12984 ACAAGAATCATT--T-CTCCTTAC-AGT-CTC-TTTTATTTTCAAGA-TTGGGAAGCGAAAACAC
742 -C-CGAA-CATTAATACT-CAAACTAATCCTCATTCT-TTTT--AGATTTAGGCA-CCATAA-AC
* * * * * * * * * * * * *
13042 ATTGCCTT-T-GTTAGTATACCCAACAGTGATGCTTTAGTGTCTCAAGAAAAGCTTTTCTT--C-
798 ATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTT-TTCCCA
* * * * * * * ** *
13102 GC-ATCGTTTTTAATAGAATC-AACGTTTGT-CTCTTAAAT-ATGCCGAACATTAATACTCA--A
862 CCAATCG-TTGTAA-AG--TCTAA-GTTCGTGC-CTCAAATGA-GACAAATATGGATTCT-AGTA
* * * * * * *
13161 ACTAATCCTCATTC-TTTTTAGATTTAGGCACCAT
919 A-TGATCTTCATTCTTTTTTCGA-TAAAGCACTAC
** * * * * * * * * ** * *** *
13195 AAACTTAGTCTTCTCATTAGGATACACA-ATATTGATGCTTTGGTTTCG-CAACAAAGGCTTTT-
1 AAACACATTCTCCTCTTTAGGACA-AAAGACATTGAAGTTTTTCTTTTGCCTGGAAA-TCTTTTC
* * * * * ** * * *** * * * **
13257 TTCCCACCAATCGTT--GTAAAGTCTAAGTTCGTGCCACAAATGAGACAA-TATGGATTCTAGTA
64 TTCGC-CCTAT-TTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCCTA
* * * * * * * *
13319 A-TGATCTTCATTCTTTTTC-CGA-T--AAAGCACTACAAACACATT--CTCCTGATTAGGACAA
127 ACAG-TCTCCTTTC-TTTTCAAGATTGGGAAGC-C-A-AAACACATTGCCT-TTG-TTAGGATAC
** * * ** * * * * * ** *** * * *
13377 GAGACATTGAAGTTTTTCTTTTTC-CGAGAAATCTTTTCTTCGCCTTATTTTCCTTAAAATGAAA
185 CCGACATTGATGCTTTGGTGTCTCAAGA-AAAGCTTTTCTTCGCGTCCTTTTTGATAGAATCAAC
** * * ** **
13441 GTTCATCCCTTGAATAA---G-ACA--AGA-A-TC--GTTTCTCCTCA--C-----AG---T---
249 GTTTGTCTCTTAAATAAGCCGAACATTA-ATACTCAAACTAATCCTCATTCTTTTTAGATTTAGG
** * *** * * *
13483 ---C-T---C-TTTTCTTTTCA--A-GATTGGCGATAGTGATGCTTTGGTTTTGCAACAAAGGAT
313 CACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCT
13537 TTTTTCCCACCAATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGT
378 TTTTTCCCACCAATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGT
*
13602 AATGATCTTCATTCTTTTTCCGATAAAGCACTACAAACACATTCTCCTTTTTAGGACAAAAGACA
443 AATGATCTTCATTCTTTTTCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACA
* *
13667 TTAAAGTTTTTCTTTTGCCTCGAAATCTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATC
508 TTGAAGTTTTTCTTTTGCCTGGAAATCTTTTCTTCG-CCTATTTTCCTTAAAATGAAAGTTCATC
* * *
13732 CCTTGAATAAGACAAACATCGATTCTCCTAACAGTCTCCTTTCTTTTCAACATTGGGATGCCAAA
572 CCTTGAATAAGACAAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAA
13797 ACACATTGCCTTTGTTAGGATACCCGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCG
637 ACACATTGCCTTTGTTAGGATACCCGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCG
* * *
13862 CGTCATTTTTGATAGAATCAACGTTTGTTTCTTAAGTAAGCCGAATATTAATACTCAAACTAATC
702 CGTCATTTTTGATAGAATCAACGTTTGTCTCTTAAATAAGCCGAACATTAATACTCAAACTAATC
* * ***
13927 CTCATTCTTTTTAAATTTAGGCACCATAAACCTAGTCTTCTCATTAGGATTGGCGATATTGATGC
767 CTCATTCTTTTTAGATTTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGC
* *
13992 TTTGGTTTTGCAACAAAGGCTTTTTTCCCACCAATCGTTGTAAAGTCTTAGTTCGTGCCTCAAAT
832 TTTGGTTTCGCAACAAAGGCTTTTTTCCCACCAATCGTTGTAAAGTCTAAGTTCGTGCCTCAAAT
*
14057 GAGACAAATATGGATTCTAGTAATGATCTTCATTCTTTTTCCGATAAAGCACTAC
897 GAGACAAATATGGATTCTAGTAATGATCTTCATTCTTTTTTCGATAAAGCACTAC
* * *
14112 AAACACATTCTCCTTTTTAGGACAAAAGACATTAAAGTTTTTCTTTTGCCTCGAAATCTTTTCTT
1 AAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTTCTTTTGCCTGGAAATCTTTTCTT
*
14177 CGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAACATCGATTCTCCTAACAG
66 CGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCCTAACAG
* * *
14242 TCTCCTTTCTTTTCAACATTAGGATGCCAAAACACATTGCCTTTGTTAGGATACCCGACATTGAT
131 TCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCGACATTGAT
* *
14307 GCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCATTTTTGATAGAATCAACGTTTGTTTCTTA
196 GCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCCTTTTTGATAGAATCAACGTTTGTCTCTTA
* * * *
14372 AGTAAGCCGAATATTAATACTCAAACTAATCCTCATTCTTTTTAAATTTAGGCACCATAAACCTA
261 AATAAGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAAACATA
*** *
14437 GTCTTCTCATTAGGATTGGCGATATTGATGCTTTGGTTTTGCAACAAAGGCTTTTTTCCCACCAA
326 GTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTCCCACCAA
*
14502 TCGTTGTAAAGTCTTAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATT
391 TCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATT
* *
14567 CTTTTTCCGATAAAGCACTACAAACACATTCTCCTTTTTAGGACAAAAGACATTAAAGTTTTTCT
456 CTTTTTCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTTCT
*
14632 TTTGCCTGGAAATCTTTTCTTCGCTCTGTTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGAC
521 TTTGCCTGGAAATCTTTTCTTCGC-CTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGAC
* * *
14697 AAGCATCGTTTCTTCTAACAGTCCCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTT
585 AAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTT
14762 GTTAGGATACCCGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCATTTTTGAT
650 GTTAGGATACCCGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCATTTTTGAT
* * *
14827 AGAATCAACGTTTGTTTCTTAAGTAAGCCGAATATTAATACTCAAACTAATCCTCATTCTTTTTA
715 AGAATCAACGTTTGTCTCTTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTA
* * *** *
14892 AATTTAGGCACCATAAACCTAGTCTTCTCATTAGGATTGGCGATATTGATGCTTTGGTTTTGCAA
780 GATTTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAA
*
14957 CAAAGGCTTTTTTCCCACCAATCGTTGTAAAGTCTTAGTTCGTGCCTCAAATGAGAC-AATATGG
845 CAAAGGCTTTTTTCCCACCAATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGG
* * *
15021 ATTCTAGTAATGATCTTCATTC-TTATTCTAATAAAGCACTAT
910 ATTCTAGTAATGATCTTCATTCTTTTTTC-GATAAAGCACTAC
* *
15063 AAACACATTCTCCTCTTTGGGACAAAAGACTTTGAAGTTTTTCTTTTGCCTGGAAATCTTTTCTT
1 AAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTTCTTTTGCCTGGAAATCTTTTCTT
* * * *
15128 CGCTCTGTTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGTTTCTTCTAACAG
66 CGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCCTAACAG
* *
15193 TCCCCTTTCTTTTCAAGATTGGGAAGCCATAACACATTGCCTTTGTTAGGATACCCGACATTGAT
131 TCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCGACATTGAT
** * *
15258 GCTTTGGTGTCTTGAGAAAAGCTTTTCTTGGCATCCTTTTTGATAGAATCAACGTTTGTCTCTTA
196 GCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCCTTTTTGATAGAATCAACGTTTGTCTCTTA
* *
15323 AATAAGCCGAACTTTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAAACTTA
261 AATAAGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAAACATA
* * * *
15388 GTCTTCTCATTAGGATACACGATATTGACGCTCTGGTTTCGCAACTAAGGCTTTCTTCCCACCAA
326 GTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTCCCACCAA
* *
15453 TCCTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGTATTCTAGTAATGATCTTCATT
391 TCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATT
* * * ** *
15518 CTTTTTCTGATAAAGCGCTATAAACACATTCTCCTGATTAGGACAAGAGACATTGAAGTTTTTCT
456 CTTTTTCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTTCT
* *
15583 TTT-TCTGAGAAATCTTTTCTTTGCCTTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGA
521 TTTGCCTG-GAAATCTTTTCTTCGCC-TATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGA
* * * *
15647 CAAGAATC-ATTTCTCCTTACAGTCT-CTTTCTTTTTAAGATTGGGAAGCGAAAACACATTGCCT
584 CAAGCATCGA-TTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCT
* * * * * *
15710 TTGTTAGTATACCCAACATTGATGCTTTAGTGTCTCAAGAAAAGCTTTTCTTCGCATCGTTTTTA
648 TTGTTAGGATACCCGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCATTTTTG
* *
15775 ATAGAATCAATGTTTGTCTCTTAAATATGCCGAACATTAATACTCAAACTAATCCTCATTCTTTT
713 ATAGAATCAACGTTTGTCTCTTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCTTTT
* * *
15840 TAGATTTAGGCACCATAAACTTAGTCTTCTCATTAGGATACACAATATTGATGCTTTGGTTTAGC
778 TAGATTTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGC
*
15905 AACAAAGGCTTTTTTCCCGCCAATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATAT
843 AACAAAGGCTTTTTTCCCACCAATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATAT
* *
15970 GGATTCTAGTAATGATCTTCATTCTTTTTCCTATAAAGCACTAC
908 GGATTCTAGTAATGATCTTCATTCTTTTTTCGATAAAGCACTAC
* * *
16014 AAACACATTCTCCTTTTTAGGACAAAAGACATTAAAGTTTTTCTTTTGCCTCGAAATCTTTTCTT
1 AAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTTCTTTTGCCTGGAAATCTTTTCTT
* *
16079 CGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTAAATAAGACAAACATCGATTCTCCTAACAG
66 CGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCCTAACAG
* * *
16144 TCTCCTTTCTTTTCAACATTGGGATGCCAAAACGCATTGCCTTTGTTAGGATACCCGACATTGAT
131 TCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCGACATTGAT
* * * *
16209 GCTTTGGTGTCACAAGAAAAGCTTTTCTTCGCGTCATTTTTGATAGAATCAACGTTCGTTTCTTA
196 GCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCCTTTTTGATAGAATCAACGTTTGTCTCTTA
* * * *
16274 AATAAGCTGAATATTAATACTCAAACTAATCCTCATTCTTTTTAAATTTAGGCACCATAAACCTA
261 AATAAGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAAACATA
***
16339 GTCTTCTCATTAGGATTGGCGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTCCCACCAA
326 GTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTCCCACCAA
*
16404 TCGTTGTAAAGTCTAATTTCGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATT
391 TCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATT
* *
16469 CTTTTT-CGATAAAGCACTACAAACACATTCTCATCTTTAGGACAAAAGACTTTGAAGTTTTTCT
456 CTTTTTCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTTCT
* * ** * * * *
16533 TTTTCTTATAAATCTTTTCTTTGCTCTATTTTTCTTAAAATGAAGGTTCTTCCCTTGAATAAGAC
521 TTTGCCTGGAAATCTTTTCTTCGC-CTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGAC
* * *
16598 AAGCATCGTTTCTCCTAACAATCTCCTTTCTTTTCAATATTGGGAAGCCAAAACACATTG-CTAT
585 AAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCT-T
* * *
16662 TGTTAGGATACCCGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTCTCTTCACGTCGTTTTTGA
649 TGTTAGGATACCCGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCATTTTTGA
16727 TAGAATCAACGTTTGTCTCTTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTT
714 TAGAATCAACGTTTGTCTCTTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTT
* * *
16792 AGATTTAGGCACTATAAACATAGTCTTCTCATTAGAATACACGATATTGATGCTCTGGTTTCGCA
779 AGATTTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCA
* *
16857 ACAAAGGCTTTTTTCCCACCAATAGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATACG
844 ACAAAGGCTTTTTTCCCACCAATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATG
* * *
16922 GATTCTGGTAATGAACTTCATTCTTTTTCCGATAAAGCACTAC
909 GATTCTAGTAATGATCTTCATTCTTTTTTCGATAAAGCACTAC
* *
16965 AAACACATTCTACTCTTTAGGATAAAAGACATTGAAGTTTTTCTTTTGCCTGGAAATCTTTTCTT
1 AAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTTCTTTTGCCTGGAAATCTTTTCTT
*
17030 CGCCCTATTTTCCTTAAACTGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCCTAACAG
66 CGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCCTAACAG
*
17095 TCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGAGACCCGACATTGAT
131 TCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCGACATTGAT
* *
17160 GCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCGTTTTTGATAGAATCAACGTTTGTTTCTTA
196 GCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCCTTTTTGATAGAATCAACGTTTGTCTCTTA
17225 AATAAGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAAACATA
261 AATAAGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAAACATA
* *
17290 GTCTTCTCATTAGGATAGACGATATTGATGCTTTGGTTT-GCAACAATGGCTTTTTTTCCCACCA
326 GTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGC-TTTTTTCCCACCA
*
17354 ATCGTTGTAAAGACTAAGTTCGTGCCTCAAATGAGAC-AATATGGATTCTAGTAATGATCTTCAT
390 ATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCAT
* ** * * *
17418 TCTTATTCTAATAAAGCACTATAAACACATTCTCCTCTTTGGGACAAAAGACTTTGAAGTTTTTC
455 TCTTTTTCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTTC
*
17483 TTTTGCCTGGAAATCTTTTCTTCGCTCTGTTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGA
520 TTTTGCCTGGAAATCTTTTCTTCGC-CTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGA
* * * *
17548 CAAGCATCGTTTCTTCTAACAGTCCCCTTTCTTTTCAAGATTGGGAAGCCATAACACATTGCCTT
584 CAAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTT
** * * *
17613 TGTTAGGATACCCGACATTGATGCTTTGGTGTCTTGAGAAAAGC-TTTCTTGGCATCCTTTTTGA
649 TGTTAGGATACCCGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCATTTTTGA
*
17677 TAGAATCAACGTTTGTCTCTTAAATAAGCCGAACTTTAATACTCAAACTAATCCTCATTCTTTTT
714 TAGAATCAACGTTTGTCTCTTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTT
* * *
17742 AGATTTAGGCACCATAAACTTAGTCTTCTCATTAGGATACACGATATTGACGCTCTGGTTTCGCA
779 AGATTTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCA
* * *
17807 ACTAAGGCTTTCTTCCCACCAATCCTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATG
844 ACAAAGGCTTTTTTCCCACCAATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATG
* * *
17872 TATTCTAGTAATGATCTTCATTC-TTTTTCTGATAAAGCGCTAT
909 GATTCTAGTAATGATCTTCATTCTTTTTTC-GATAAAGCACTAC
** * *
17915 AAACACATTCTCCTGATTAGGACAAGAGACATTGAAGTTTTTCTTTT-TCTGAGAAATCTTTTCT
1 AAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTTCTTTTGCCTG-GAAATCTTTTCT
* * *
17979 TTGCCTTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGAATCGATTCTCCTTAAC
65 TCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCC-TAAC
* *
18044 AGTCTCCTTTCTTTT-AAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGAGACCCAACATTG
129 AGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCGACATTG
* * * * *
18108 ATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCATCGTTTTTAATAGAATCAATGTTTGTTTCT
194 ATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCCTTTTTGATAGAATCAACGTTTGTCTCT
18173 TAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAAACA
259 TAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAAACA
* *
18238 TAGTCTTCTCATTAGGATAGACGATATTGATGCTTTGGGTTT-GCAACAATGGCTTTTTTTCCCA
324 TAGTCTTCTCATTAGGATACACGATATTGATGCTTT-GGTTTCGCAACAAAGGC-TTTTTTCCCA
* * *
18302 CCAATCGTTGTAAAGACTAAGTTCGTGCCTCAAATGAGA-TAGTATGGATTCTAGTAATGATCTT
387 CCAATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTT
* * *
18366 CATTCTTTTTCCTATAAAGCACTACATACACATTCTCCTCTTTAGGACAAAAGACTTTGAAGTTT
452 CATTCTTTTTCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTT
* * *
18431 TTCTTTTGGCTGGAAATCTTTTCTTCGCTCTATTTTCCTTAAAATGAAACTTCATCCCATGAATA
517 TTCTTTTGCCTGGAAATCTTTTCTTCGC-CTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATA
* * * *
18496 AGACAAGCATCGTTTCTCCTAACAATCTCCATTCCTTTCAAGATTGGGAAGCCAAAACACATTGC
581 AGACAAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGC
* *
18561 CTTTGTTAGGATACCCGACATTAATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCGTTTT
646 CTTTGTTAGGATACCCGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCATTTT
* * *
18626 TAATAGAATCAACGTTTGTCTTTTAAATATGCCGAACATTAATACTCAAACTAATCCTCATTCTT
711 TGATAGAATCAACGTTTGTCTCTTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCTT
*
18691 TTTAGATTTAGGCACCATAAACATAGTTTTCTCATTAGGATACACGATATTGATGCTTTGGTTTC
776 TTTAGATTTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTC
* *
18756 GCAACAAAAGCTTTTTTCCCACCAATCGTTCTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAAT
841 GCAACAAAGGCTTTTTTCCCACCAATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAAT
* *
18821 ATGGATTCTAGTAATGATCTTCATTCTTTTTCCTATAAAGCACTAC
906 ATGGATTCTAGTAATGATCTTCATTCTTTTTTCGATAAAGCACTAC
* * *
18867 AAACACATTCTCCTTTTTAGGACAAAAGACATTAAAGTTTTTCTTTTGCCTCGAAATCTTTTCTT
1 AAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTTCTTTTGCCTGGAAATCTTTTCTT
* *
18932 CGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTAAATAAGACAAACATCGATTCTCCTAACAG
66 CGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCCTAACAG
* *
18997 TCTCCTTTCTTTTCAACATTGGGATGCCAAAACACATTGCCTTTGTTAGGATACCCGACATTGAT
131 TCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCGACATTGAT
* * * *
19062 GCTTTGGTGTCACAAGAAAAGCTTTTCTTCGCGTCATTTTTGATAGAATCAACGTTCGTTTCTTA
196 GCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCCTTTTTGATAGAATCAACGTTTGTCTCTTA
* * * *
19127 AATAAGCTGAATATTAATACTCAAACTAATCCTCATTCTTTTTAAATTTAGGCACCATAAACCTA
261 AATAAGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAAACATA
*** *
19192 GTCTTCTCATTAGGATTGGCGATATTGATGCTTTGGTTTTGCAACAAAGGCTTTTTTCCCACCAA
326 GTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTCCCACCAA
19257 TCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGAC-AATATGGATTCTAGTAATGATCTTCATT
391 TCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATT
* * * * *
19321 CTTATTCTGATAAAGCACTATAAACACATTCTCCTCTTTGGGACAAAAGACTTTGAAGTTTTTCT
456 CTTTTTCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTTCT
19386 TTTGCCTGGAAATCTTTTCTTCGCTCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGAC
521 TTTGCCTGGAAATCTTTTCTTCGC-CTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGAC
* * * *
19451 AAGCATCGTTTCTTCTAACAGTCCCCTTTCTTTTCATGATTGGGAAGCCAAAACACATTGCCTTT
585 AAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTT
* *
19516 GTTAGGATACCCGACATTGATGCTTTGGTGTCTCAAGACAAGCTTTTCTTCGCGTCATTTTTTAT
650 GTTAGGATACCCGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCATTTTTGAT
* * * *
19581 AGAATTAACGTTTGTCTCTTAAATAAGCCAAACATTAATACTCAAACTAATACTCATTCCTTTTA
715 AGAATCAACGTTTGTCTCTTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTA
* * *
19646 GATTTAGGCACCATAAACATAGTCTTCTCTTTAGGATACATGATATTGATGCTTTGGTTTCACAA
780 GATTTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAA
* * * *
19711 CTAAGGCTTTCTTCCCACCAATCGTTGTTAAGTCTAAGTTCGTGCCTCGAATGAGAC-AATATGG
845 CAAAGGCTTTTTTCCCACCAATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGG
* *
19775 ATTCTAGTAATGATCTTCATTCTTTTTTCGATAAAGTACTAT
910 ATTCTAGTAATGATCTTCATTCTTTTTTCGATAAAGCACTAC
* *
19817 AAACACATTCTCCTCTTTGGGACAAAAGACTTTGAAGTTTTTCTTTTGCCTGGAAATCTTTTCTT
1 AAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTTCTTTTGCCTGGAAATCTTTTCTT
* * * *
19882 CGCTCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGTTTCTTCTAGCAG
66 CGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCCTAACAG
* *
19947 TCCCCTTTCTTTTCAAGATTGGGAAGCCATAACACATTGCCTTTGTTAGGATACCCGACATTGAT
131 TCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCGACATTGAT
* * * *
20012 GCTTTGGTGTCTCGAGAAAAGCTTTTCTTGGCATCCTTTTTGATAGAATCAACATTTGTCTCTTA
196 GCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCCTTTTTGATAGAATCAACGTTTGTCTCTTA
* *
20077 AATAAGCCGAACTTTAATACTCAAACTAATGCTCATTCTTTTTAGATTTAGGCACCATAAAC-T-
261 AATAAGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAAACATA
20140 GTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTCCCACCAA
326 GTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTCCCACCAA
*
20205 TCGTTGTAAAGTCTAATTTCGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATT
391 TCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATT
** * *
20270 CTTTTTTTGATAAAGCACTACAAACACATTCTCATCTTTAGGACAAAAGACTTTGAAGTTTTTCT
456 CTTTTTCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTTCT
* * ** * * * *
20335 TTTTCTTATAAATCTTTTCTTTGCTCTATTTTTCTTAAAATGAAGGTTCTTCCCTTGAATAAGAC
521 TTTGCCTGGAAATCTTTTCTTCGC-CTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGAC
* * *
20400 AAGCATCGTTTCTCCTAACAATCTCCTTTCTTTTCAATATTGGGAAGCCAAAACACATTG-CTAT
585 AAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCT-T
* * *
20464 TGTTAGGATACCCGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTCTCTTCACGTCGTTTTTGA
649 TGTTAGGATACCCGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCATTTTTGA
20529 TAGAATCAACGTTTGTCTCTTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTT
714 TAGAATCAACGTTTGTCTCTTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTT
* * *
20594 AGATTTAGGCACTATAAACATAGTCTTCTCATTAGAATACACGATATTGATGCTCTGGTTTCGCA
779 AGATTTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCA
* *
20659 ACAAAGGCTTTTTTCCCACCAATAGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATACG
844 ACAAAGGCTTTTTTCCCACCAATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATG
* * *
20724 GATTCTGGTAATGAACTTCATTCTTTTTCCGATAAAGCACTAC
909 GATTCTAGTAATGATCTTCATTCTTTTTTCGATAAAGCACTAC
* *
20767 AAACACATTCTACTCTTTAGGATAAAAGACATTGAAGTTTTTCTTTTGCCTGGAAATCTTTTCTT
1 AAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTTCTTTTGCCTGGAAATCTTTTCTT
*
20832 CGCCCTATTTTCCTTAAACTGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCCTAACAG
66 CGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCCTAACAG
*
20897 TCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGAGACCCGACATTGAT
131 TCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCGACATTGAT
* * *
20962 GGTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCGTTTTTGATAGAATCAACGTTTGTTTCTTA
196 GCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCCTTTTTGATAGAATCAACGTTTGTCTCTTA
21027 AATAAGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAAACATA
261 AATAAGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAAACATA
* *
21092 GTCTTCTCATTAGGATAGACGATATTGATGCTTTGGGTTT-GCAACAATGGCTTTTTTTCCCACC
326 GTCTTCTCATTAGGATACACGATATTGATGCTTT-GGTTTCGCAACAAAGGC-TTTTTTCCCACC
* * *
21156 AATCGTTGTAAAGACTAAGTTCGTGCCTCAAATGAGA-TAGTATGGATTCTAGTAATGATCTTCA
389 AATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCA
* * *
21220 TTCTTTTTCCTATAAAGCACTACATACACATTCTCCTCTTTAGGACAAAAGACTTTGAAGTTTTT
454 TTCTTTTTCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTT
* * *
21285 CTTTTGGCTGGAAATCTTTTCTTCGCTCTATTTTCCTTAAAATGAAACTTCATCCCATGAATAAG
519 CTTTTGCCTGGAAATCTTTTCTTCGC-CTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAG
* * *
21350 ACAAGCATCGTTTCTCCTAACAATCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCT
583 ACAAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCT
* * *
21415 TTGTTAGGATACCCGACATTAATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCGTTTTTA
648 TTGTTAGGATACCCGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCATTTTTG
* *
21480 ATAGAATCAACGTTTGTCTTTTAAATATGCCGAACATTAATACTCAAACTAATCCTCATTCTTTT
713 ATAGAATCAACGTTTGTCTCTTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCTTTT
*
21545 TAGATTTAGGCACCATAAACATAGTTTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGC
778 TAGATTTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGC
* *
21610 AACAAAAGCTTTTTTCCCACCAATCGTTCTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATAT
843 AACAAAGGCTTTTTTCCCACCAATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATAT
*
21675 GGATTCTAGTAATGATCTTCATTCTTTTTCCGATAAAGCACTAC
908 GGATTCTAGTAATGATCTTCATTCTTTTTTCGATAAAGCACTAC
* * * *
21719 AAACACATTCTCCTTTTTAGGACAAAAGACATTAAAGTTTTTCTTTTGCCTCGAAATCTTTCCTT
1 AAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTTCTTTTGCCTGGAAATCTTTTCTT
*
21784 CGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAACATCGATTCTCCTAACAG
66 CGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCCTAACAG
* * *
21849 TCTCCTTTCTTTTCAACATTGGGATGCCAAAACACATTGCCTTTGTTAGGATACCCGATATTGAT
131 TCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCGACATTGAT
* * *
21914 GCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCATTTTTGATAGAATCAACGTTGGTTTCTTA
196 GCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCCTTTTTGATAGAATCAACGTTTGTCTCTTA
* * * *
21979 AATAAGCTGAATATTAATACTCAAACTAATCCTCATTCTTTTTAAATTTAGGCACCATAAACCTA
261 AATAAGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAAACATA
*** *
22044 GTCTTCTCATTAGGATTGGCGATATTGATGCTTTGGTTTTGCAACAAAGGCTTTTTTCCCACCAA
326 GTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTCCCACCAA
22109 TCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGAC-AATATGGATTCTAGTAATGATCTTCATT
391 TCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATT
* * * * *
22173 CTTATTCTGATAAAGCACTATAAACACATTCTCCTCTTTGGGACAAAAGACTTTGAAGTTTTTCT
456 CTTTTTCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTTCT
22238 TTTGCCTGGAAATCTTTTCTTCGCTCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGAC
521 TTTGCCTGGAAATCTTTTCTTCGC-CTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGAC
* * * *
22303 AAGCATCGTTTCTTCTAACAGTCCCCTTTCTTTTCATGATTGGGAAGCCAAAACACATTGCCTTT
585 AAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTT
* *
22368 GTTAGGATACCCGACATTGATGCTTTGGTGTCTCGAGAAAAGCTTTTCTTCGCGTCATTTTTTAT
650 GTTAGGATACCCGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCATTTTTGAT
* * * *
22433 AGAATTAACGTTTGTCTCTTAAATAAGCCAAACATTAATACTCAAACTAATACTCATTCCTTTTA
715 AGAATCAACGTTTGTCTCTTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTA
* * *
22498 GATTTAGGCACCATAAACATAGTCTTCTCTTTAGGATACATGATATTGATGCTTTGGTTTCACAA
780 GATTTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAA
* * *
22563 CTAAGGCTTTCTTCCCACCAATCGTTGTTAAGTCTAAGTTCGTGCCTCAAATGAGAC-AATATGG
845 CAAAGGCTTTTTTCCCACCAATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGG
* *
22627 ATTCTAGTAATGATCTTCATTCTTTTTTCGATAAAGTACTAT
910 ATTCTAGTAATGATCTTCATTCTTTTTTCGATAAAGCACTAC
* *
22669 AAACACATTCTCCTCTTTGGGACAAAAGACTTTGAAGTTTTTCTTTTGCCTGGAAATCTTTTCTT
1 AAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTTCTTTTGCCTGGAAATCTTTTCTT
* * *
22734 CGCTCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGTTTCTTCTAACAG
66 CGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCCTAACAG
* *
22799 TCCCCTTTCTTTTCGAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCGACATTGAT
131 TCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCGACATTGAT
* * *
22864 GCTTTGGTGTCTCGAGAAAAGCTTTTCTTGGCATCCTTTTTGATAGAATCAACGTTTGTCTCTTA
196 GCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCCTTTTTGATAGAATCAACGTTTGTCTCTTA
* * *
22929 AAAAAGCCGAACTTTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAAACTTA
261 AATAAGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAAACATA
* * * * *
22994 GTCTTCTCATTAGGATACACGATATTGACGCTCTGGTTTCGCAACTAAGGCTTTCTTCGCACCAA
326 GTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTCCCACCAA
*
23059 TCCTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGTG-TTCTAGTAATGATCTTCAT
391 TCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATG-GATTCTAGTAATGATCTTCAT
* * ** *
23123 TCTTTTTCTGATAAAGCACTATAAACACATTCTCCTGATTAGGACAAGAGACATTGAAGTTTTTC
455 TCTTTTTCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTTC
*
23188 TTTTTCC-GAGAAATCTTTTCTTCGCCTTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAG
520 TTTTGCCTG-GAAATCTTTTCTTCGCC-TATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAG
* * * * *
23252 ACAAGAATC-ATTTCTCCTTACAGTCTCTTTTATTTTCAAGATTGGGAAGCGAAAACACATTGCC
583 ACAAGCATCGA-TTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCC
* * * * * *
23316 TTTGTTAGTATACCCAACAGTGATGCTTTAGTGTCTCAAGAAAAGCTTTTCTTCGCATCGTTTTT
647 TTTGTTAGGATACCCGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCATTTTT
* *
23381 AATAGAATCAACGTTTGTCTCTTAAATATGCCGAACATTAATACTCAAACTAATCCTCATTCTTT
712 GATAGAATCAACGTTTGTCTCTTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCTTT
* *
23446 TTAGATTTAGGCACCATAAACTTAGTCTTCTCATTAGGATACACAATATTGATGCTTTGGTTTCG
777 TTAGATTTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCG
*
23511 CAACAAAGGCTTTTTTCCCACCAATCGTTGTAAAGTCTAAGTTCGTGCCACAAATGAGAC-AATA
842 CAACAAAGGCTTTTTTCCCACCAATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATA
*
23575 TGGATTCTAGTAATGATCTTCATTCTTTTTCCGATAAAGCACTAC
907 TGGATTCTAGTAATGATCTTCATTCTTTTTTCGATAAAGCACTAC
* * *
23620 AAACACATTCTCCTCATTAGGACAAGAGACATTGAAGTTTTTCTTTT-TCTGAGAAATCTTTTCT
1 AAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTTCTTTTGCCTG-GAAATCTTTTCT
* * * * *
23684 TCACCTTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGAATCGTTTCTCCTCACA
65 TCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCCTAACA
*
23749 GTCTCTTTTCTTTTCAAGATTGG
130 GTCTCCTTTCTTTTCAAGATTGG
23772 CGATAGTGAT
Statistics
Matches: 19292, Mismatches: 2106, Indels: 1117
0.86 0.09 0.05
Matches are distributed among these distances:
911 1 0.00
912 1 0.00
913 5 0.00
914 65 0.00
915 78 0.00
916 143 0.01
917 304 0.02
918 353 0.02
919 148 0.01
920 36 0.00
921 11 0.00
922 6 0.00
923 4 0.00
924 2 0.00
925 3 0.00
926 3 0.00
927 3 0.00
928 7 0.00
930 3 0.00
931 4 0.00
932 5 0.00
933 2 0.00
934 4 0.00
935 2 0.00
937 3 0.00
938 2 0.00
940 3 0.00
941 1 0.00
942 5 0.00
943 2 0.00
944 5 0.00
945 4 0.00
946 27 0.00
947 35 0.00
948 819 0.04
949 1024 0.05
950 3791 0.20
951 7322 0.38
952 3624 0.19
953 827 0.04
954 560 0.03
955 37 0.00
956 5 0.00
957 3 0.00
ACGTcount: A:0.29, C:0.21, G:0.14, T:0.37
Consensus pattern (951 bp):
AAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTTCTTTTGCCTGGAAATCTTTTCTT
CGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCCTAACAG
TCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCGACATTGAT
GCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCCTTTTTGATAGAATCAACGTTTGTCTCTTA
AATAAGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAAACATA
GTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTCCCACCAA
TCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATT
CTTTTTCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTTCT
TTTGCCTGGAAATCTTTTCTTCGCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACA
AGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTG
TTAGGATACCCGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCATTTTTGATA
GAATCAACGTTTGTCTCTTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAG
ATTTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAC
AAAGGCTTTTTTCCCACCAATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGA
TTCTAGTAATGATCTTCATTCTTTTTTCGATAAAGCACTAC
Found at i:9037 original size:475 final size:474
Alignment explanation
Indices: 7835--9893 Score: 3239
Period size: 475 Copynumber: 4.3 Consensus size: 474
7825 TTAAATTTAG
* ** * * * *
7835 GCACCATAAACACATTCTCCTTTTTATGACAAAAGACATTAAAGTTTTTCTTTTGCCTG-GAAAT
1 GCACTATAAACACATTCTCCTGATTAGGACAAGAGACATTGAAGTTTTTCTTTTTCC-GAGAAAT
* *
7899 CTTTTCTTCGCCCTATTTTCCTTAAAAATGAAAGTTCATCCCTTGAATAAGACAA-ACATCGATT
65 CTTTTCTTCGCCTTATTTTCCTT-AAAATGAAAGTTCATCCCTTGAATAAGACAAGA-ATCGTTT
* * * *
7963 CTCCTAACAGTCTCCTTTCTTTTCAACATTGGGATGCCAAAACACTTTGCCTTTGTTAGGATACC
128 CTCCTAACAGTCTCTTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACC
* * * * * * *
8028 CGATATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCATTTTTGATAGAATCAACGT
193 CAACAGTGATGCTTTAGTGTCTCAAGAAAAGCTTTTCTTCGCATCGTTTTTAATAGAATCAACGT
* *
8093 TTGTTTCTTAAATAAGCCGAACTTTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCAC
258 TTGTCTCTTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCAC
* * *
8158 CATAAACTTAGTCTTCTCATTAGGATACACGATATTGACGCTCTGGTTTCGCAACTAAGGCTTAC
323 CATAAACTTAGTCTTCTCATTAGGATACACAATATTGACGCTCTGGTTTCGCAACAAAGGCTTTC
* *
8223 TTCCCACCAATCCTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGAAAAATATGTATTCTAGTAAT
388 TTCCCACCAATCCTTGTAAAGTCTAAGTTCGTGCCTCAAATGAG-ACAATATGGATTCTAGTAAT
8288 GATCTTCATTCTTTTTCTGATAAA
452 GATCTTCATTCTTTTTC-GATAAA
8312 GCACTATAAACACATTCTCCTGATTAGGACAAGAGACATTGAAGTTTTTCTTTTTCCGAGAAATC
1 GCACTATAAACACATTCTCCTGATTAGGACAAGAGACATTGAAGTTTTTCTTTTTCCGAGAAATC
*
8377 TTTTCTTCGCCTTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGAATCATTTCTC
66 TTTTCTTCGCCTTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGAATCGTTTCTC
* * * *
8442 CTTACAGTCTCTTTTATTTTCAAGATTGGGAAGCGAAAACACATTGCCTTTGTTAGTATACCCAA
131 CTAACAGTCTCTTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCAA
8507 CAGTGATGCTTTAGTGTCTCAAGAAAAGCTTTTCTTCGCATCGTTTTTAATAGAATCAACGTTTG
196 CAGTGATGCTTTAGTGTCTCAAGAAAAGCTTTTCTTCGCATCGTTTTTAATAGAATCAACGTTTG
* *
8572 TCTCTTAAATATGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATATAGGCACCAT
261 TCTCTTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCAT
* * * *
8637 AAACTTAGTCATCTCATTAGGATACACAATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTC
326 AAACTTAGTCTTCTCATTAGGATACACAATATTGACGCTCTGGTTTCGCAACAAAGGCTTTCTTC
*
8702 CCACCAATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAATATGGATTCTAGTAATGATC
391 CCACCAATCCTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAATATGGATTCTAGTAATGATC
8767 TTCATTCTTTTTTCGATAAA
456 TTCATTC-TTTTTCGATAAA
* ** * * * * *
8787 GTACTATAAACACATTCTCCTCTTTGGGGCAAAAGACTTTGAAGTTTTTCTTTTGCCTG-GAAAT
1 GCACTATAAACACATTCTCCTGATTAGGACAAGAGACATTGAAGTTTTTCTTTTTCC-GAGAAAT
*
8851 CTTTTCTTCG-CTCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGTTTC
65 CTTTTCTTCGCCT-TATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGAATCGTTTC
* * * *
8915 TTCTAACAGTCCCCTTTCTTTTAAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCC
129 TCCTAACAGTCTCTTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCC
* * * * * * *
8980 GACATTGATGCTTTGGTGTCTCGAGAAAAGCTTTTCTTGGCATCCTTTTTGATAGAATCAACGTT
194 AACAGTGATGCTTTAGTGTCTCAAGAAAAGCTTTTCTTCGCATCGTTTTTAATAGAATCAACGTT
* * *
9045 TGTCTCTTAAAAAAGCCAAACTTTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACC
259 TGTCTCTTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACC
* * *
9110 ATAAACTTAGTCTTCTCATTAGGATACACGATATTGACGCTCTAGTTTCGCAACTAAGGCTTTCT
324 ATAAACTTAGTCTTCTCATTAGGATACACAATATTGACGCTCTGGTTTCGCAACAAAGGCTTTCT
*
9175 TCCCACCAATCCTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGTATTCTAGTAATG
389 TCCCACCAATCCTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGAC-AATATGGATTCTAGTAATG
*
9240 ATCTTCATTCTTTTTC--TGAA
453 ATCTTCATTCTTTTTCGATAAA
9260 GCACTATAAACACATTCTCCTGATTAGGACAAGAGACATTGAAGTTTTTCTTTTTCCGAGAAATC
1 GCACTATAAACACATTCTCCTGATTAGGACAAGAGACATTGAAGTTTTTCTTTTTCCGAGAAATC
* *
9325 TTTTCTTCGCCTTATTTTCCTTAAAATAAAAGTTCATCCCTTGAATAAGACAAGAATCATTTCTC
66 TTTTCTTCGCCTTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGAATCGTTTCTC
* * * *
9390 CTTACAGTCTCTTTTATTTTCAAGATTGGGAAGCGAAAACACATTGCCTTTGTTAGTATACCCAA
131 CTAACAGTCTCTTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCAA
* *
9455 CAGTGATGCTTTAGTGTCTCAGGAAAAGCTTTTCTTCGCATCGTTTTTAATAGAATCAGCGTTTG
196 CAGTGATGCTTTAGTGTCTCAAGAAAAGCTTTTCTTCGCATCGTTTTTAATAGAATCAACGTTTG
*
9520 TCTCTTAAATATGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCAT
261 TCTCTTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCAT
* * *
9585 AAACTTAGTCTTCTCATTAGGATACACAATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTC
326 AAACTTAGTCTTCTCATTAGGATACACAATATTGACGCTCTGGTTTCGCAACAAAGGCTTTCTTC
* *
9650 CCACCAATCGTTGTAAAGTCTAAGTTCGTGCCACAAATGAGACAATATGGATTCTAGTAATGATC
391 CCACCAATCCTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAATATGGATTCTAGTAATGATC
9715 TTCATTCTTTTTCCGATAAA
456 TTCATTCTTTTT-CGATAAA
*
9735 GCACTACAAACACATTCTCCTGATTAGGACAAGAGACATTGAAGTTTTTCTTTTTCCGAGAAATC
1 GCACTATAAACACATTCTCCTGATTAGGACAAGAGACATTGAAGTTTTTCTTTTTCCGAGAAATC
9800 TTTTCTTCGCCTTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGAATCGTTTCTC
66 TTTTCTTCGCCTTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGAATCGTTTCTC
*
9865 CTCACAGTCTCTTTTCTTTTCAAGATTGG
131 CTAACAGTCTCTTTTCTTTTCAAGATTGG
9894 CGATAGTGAT
Statistics
Matches: 1445, Mismatches: 126, Indels: 24
0.91 0.08 0.02
Matches are distributed among these distances:
472 34 0.02
473 392 0.27
474 4 0.00
475 588 0.41
476 349 0.24
477 78 0.05
ACGTcount: A:0.29, C:0.21, G:0.14, T:0.36
Consensus pattern (474 bp):
GCACTATAAACACATTCTCCTGATTAGGACAAGAGACATTGAAGTTTTTCTTTTTCCGAGAAATC
TTTTCTTCGCCTTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGAATCGTTTCTC
CTAACAGTCTCTTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCAA
CAGTGATGCTTTAGTGTCTCAAGAAAAGCTTTTCTTCGCATCGTTTTTAATAGAATCAACGTTTG
TCTCTTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCAT
AAACTTAGTCTTCTCATTAGGATACACAATATTGACGCTCTGGTTTCGCAACAAAGGCTTTCTTC
CCACCAATCCTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAATATGGATTCTAGTAATGATC
TTCATTCTTTTTCGATAAA
Found at i:12112 original size:475 final size:475
Alignment explanation
Indices: 9894--13503 Score: 5635
Period size: 475 Copynumber: 7.6 Consensus size: 475
9884 TCAAGATTGG
* * *
9894 CGATAGTGATGCTTTGGTTTTGCAACAAAGGATTTTTTCCCACCAATCGTTGTAAAGTCTAAGTT
1 CGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTCCCACCAATCGTTGTAAAGTCTAAGTT
*
9959 CGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATTCTTTTTCCGATAAAGCACT
66 CGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATTCTTTTTCTGATAAAGCACT
* * * *
10024 ACAAACACATTCTCCTTTTTAGGACAAAAGACATTAAAGTTTTTCTTTTGCCTCGAAATCTTTTC
131 ATAAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTTCTTTTGCCTGGAAATCTTTTC
* * *
10089 TTCGCCCTATTTTCCTTAAAATGAAAGTTCATCTCTTGAATAAGACAAACATCGATTCTCCTAAC
196 TTCG-CCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGTTTCTCCTAAC
* *
10154 AGTCTCCTTTCTTTTCAACATTGGGATGCCAAAACACATTGCCTTTGTTAGGATACCCGACATTG
260 AGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCGACATTG
* *
10219 ATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCATTTTTGATAGAATCAACGTTTGTTTCT
325 ATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCATCATTTTTGATAGAATCAACGTTTGTCTCT
* * *
10284 TAAGTAAGCCGAATATTAATACTCAAACTAATCCTCATTCTTTTTAAATTTAGGCACCATAAACC
390 TAAATAAGCCGAATATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAAACT
***
10349 TAGTCTTCTCATTAGGATTGG
455 TAGTCTTCTCATTAGGATACA
*
10370 CGATATTGATGCTTTGGTTTTGCAACAAAGGCTTTTTTCCCACCAATCGTTGTAAAGTCTAAGTT
1 CGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTCCCACCAATCGTTGTAAAGTCTAAGTT
*
10435 CGTGCCTCAAATGAGAC-AATATGGATTCTAGTAATGATCTTCATTCTTATTCTGATAAAGCACT
66 CGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATTCTTTTTCTGATAAAGCACT
* *
10499 ATAAACACATTCTCCTCTTTGGGACAAAAGACTTTGAAGTTTTTCTTTTGCCTGGAAATCTTTTC
131 ATAAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTTCTTTTGCCTGGAAATCTTTTC
*
10564 TTCGCTCT-TTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGTTTCTTCTAAC
196 TTCGC-CTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGTTTCTCCTAAC
* *
10628 AGTCCCCTTTCTTTTCAAGATTGGGAAGCCATAACACATTGCCTTTGTTAGGATACCCGACATTG
260 AGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCGACATTG
** * *
10693 ATGCTTTGGTGTCTTGAG-AAAGCTTTTCTTGGCATCCTTTTTGATAGAATCAACGTTTGTCTCT
325 ATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCATCATTTTTGATAGAATCAACGTTTGTCTCT
10757 TAAATAAGCCGAACT-TTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAAAC
390 TAAATAAGCCGAA-TATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAAAC
10821 TTAGTCTTCTCATTAGGATACA
454 TTAGTCTTCTCATTAGGATACA
* * * * *
10843 CGATATTGACGCTCTGGTTTCGCAACTAAGGCTTTCTTCCCACCAATCCTTGTAAAGTCTAAGTT
1 CGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTCCCACCAATCGTTGTAAAGTCTAAGTT
* * *
10908 CGTGCCTCAAATGAGACAAATATGTATTCTAGTAATGATCTTCATTCTTTTTCTGATAAATCGCT
66 CGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATTCTTTTTCTGATAAAGCACT
** * *
10973 ATAAACACATTCTCCTGATTAGGACAAGAGACATTGAAGTTTTTCTTTT-TCTGAGAAATCTTTT
131 ATAAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTTCTTTTGCCTG-GAAATCTTTT
* * * *
11037 CTTTGCCTTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGAATCATTTCTCCTTA
195 CTTCGCC-TATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGTTTCTCCTAA
* * * * *
11102 CAGTCTCTTTTCTTTTTAAGATTGGGAAGCGAAAACACATTGCCTTTGTTAGTATACCCAACATT
259 CAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCGACATT
* * *
11167 GATGCTTTAGTGTCTCAAGAAAAGCTTTTCTTCGCATCGTTTTTAATAGAATCAACGTTTGTCTC
324 GATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCATCATTTTTGATAGAATCAACGTTTGTCTC
* *
11232 TTAAATATGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAAAC
389 TTAAATAAGCCGAATATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAAAC
11297 TTAGTCTTCTCATTAGGATACA
454 TTAGTCTTCTCATTAGGATACA
* *
11319 CAATATTGATGCTTTGGTTTAGCAACAAAGGCTTTTTTCCCACCAATCGTTGTAAAGTCTAAGTT
1 CGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTCCCACCAATCGTTGTAAAGTCTAAGTT
11384 CGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATTCTTTTTCCT-ATAAAGCAC
66 CGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATTCTTTTT-CTGATAAAGCAC
* * * *
11448 TACAAACACATTCTCCTTTTTAGGACAAAAGACATTAAAGTTTTTCTTTTGCCTCGAAATCTTTT
130 TATAAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTTCTTTTGCCTGGAAATCTTTT
* * *
11513 CTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTAAATAAGACAAACATCGATTCTCCTAA
195 CTTCG-CCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGTTTCTCCTAA
* *
11578 CAGTCTCCTTTCTTTTCAACATTGGGATGCCAAAACACATTGCCTTTGTTAGGATACCCGACATT
259 CAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCGACATT
* * * *
11643 GATGCTTTGGTGTCACAAGAAAAGCTTTTCTTCGCGTCATTTTTGATAGAATCAACGTTCGTTTC
324 GATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCATCATTTTTGATAGAATCAACGTTTGTCTC
* *
11708 TTAAATAAGCTGAATATTAATACTCAAACTAATCCTCATTCTTTTTAAATTTAGGCACCATAAAC
389 TTAAATAAGCCGAATATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAAAC
* ***
11773 CTAGTCTTCTCATTAGGATTGG
454 TTAGTCTTCTCATTAGGATACA
* *
11795 CGATATTGATGCTTTGGTTTTGCAACAAAGGCTTTTTTCCCACCAATCGTTGTAAATTCTAAGTT
1 CGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTCCCACCAATCGTTGTAAAGTCTAAGTT
** *
11860 CGTAACTCAAATGAGAC-AATATGGATTCTAGTAATGATCTTCATTCTTATTCTGATAAAGCACT
66 CGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATTCTTTTTCTGATAAAGCACT
* *
11924 ATAAACACATTCTCCTCTTTGGGACAAAAGACTTTGAAGTTTTTCTTTTGCCTGGAAATCTTTTC
131 ATAAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTTCTTTTGCCTGGAAATCTTTTC
*
11989 TTCGCTCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGTTTCTTCTAAC
196 TTCGC-CTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGTTTCTCCTAAC
* *
12054 AGTCCCCTTTCTTTTCATGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCGACATTG
260 AGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCGACATTG
* * *
12119 ATGCTTTGGTGTCTCAAGACAAGCTTTTCTTCGCGTCATTTTTGATAGAATTAACGTTTGTCTCT
325 ATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCATCATTTTTGATAGAATCAACGTTTGTCTCT
* * * * *
12184 TAAATAAGCCAAACATTAATACTCAAACTAATACTCATTCCTTTTAGATTTAGGCACCATAAACA
390 TAAATAAGCCGAATATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAAACT
*
12249 TAGTCTTCTCGTTAGGATACA
455 TAGTCTTCTCATTAGGATACA
* * * * *
12270 TGATATTGATGCTTTGGTTTCACAACTAAGGCTTTCTTCCCACCAATCGTTGTTAAGTCTAAGTT
1 CGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTCCCACCAATCGTTGTAAAGTCTAAGTT
*
12335 CGTGCCTCAAATGAGAC-AATATGGATTCTAGTAATGATCTTCATTCTTTTT-TCGATAAAGTAC
66 CGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATTCTTTTTCT-GATAAAGCAC
* * *
12398 TATAAACACATTCTCCTCTTTGGGGCAAAAGACTTTGAAGTTTTTCTTTTGCCTGGAAATCTTTT
130 TATAAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTTCTTTTGCCTGGAAATCTTTT
*
12463 CTTCGCTCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGTTTCTTCTAA
195 CTTCGC-CTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGTTTCTCCTAA
* *
12528 CAGTCCCCTTTCTTTTCAAGATTGGGAAGCCATAACACATTGCCTTTGTTAGGATACCCGACATT
259 CAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCGACATT
* * * *
12593 GATGCTTTGGTGTCTCGAGAAAAGCTTTTCTTGGCATCCTTTTTGATAGAATCAATGTTTGTCTC
324 GATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCATCATTTTTGATAGAATCAACGTTTGTCTC
*
12658 TTAAAAAAGCCGAACT-TTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAAA
389 TTAAATAAGCCGAA-TATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAAA
12722 CTTAGTCTTCTCATTAGGATACA
453 CTTAGTCTTCTCATTAGGATACA
* * * * *
12745 CGATATTGACGCTCTGGTTTCGCAACTAAGGCTTTCTTCCCACCAATCCTTGTAAAGTCTAAGTT
1 CGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTCCCACCAATCGTTGTAAAGTCTAAGTT
* *
12810 CGTGCATCAAATGAGACAAATATGTATTCTAGTAATGATCTTCATTCTTTTTCTGATAAAGCACT
66 CGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATTCTTTTTCTGATAAAGCACT
** * *
12875 ATAAACACATTCTCCTGATTAGGACAAGAGACATTGAAGTTTTTCTTTTTCC-GAGAAATCTTTT
131 ATAAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTTCTTTTGCCTG-GAAATCTTTT
* * *
12939 CTTCGCCTTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGAATCATTTCTCCTTA
195 CTTCGCC-TATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGTTTCTCCTAA
* * * * * *
13004 CAGTCTCTTTTATTTTCAAGATTGGGAAGCGAAAACACATTGCCTTTGTTAGTATACCCAACAGT
259 CAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCGACATT
* * *
13069 GATGCTTTAGTGTCTCAAGAAAAGCTTTTCTTCGCATCGTTTTTAATAGAATCAACGTTTGTCTC
324 GATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCATCATTTTTGATAGAATCAACGTTTGTCTC
* *
13134 TTAAATATGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAAAC
389 TTAAATAAGCCGAATATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAAAC
13199 TTAGTCTTCTCATTAGGATACA
454 TTAGTCTTCTCATTAGGATACA
*
13221 CAATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTCCCACCAATCGTTGTAAAGTCTAAGTT
1 CGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTCCCACCAATCGTTGTAAAGTCTAAGTT
* *
13286 CGTGCCACAAATGAGAC-AATATGGATTCTAGTAATGATCTTCATTCTTTTTCCGATAAAGCACT
66 CGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATTCTTTTTCTGATAAAGCACT
* ** * *
13350 ACAAACACATTCTCCTGATTAGGACAAGAGACATTGAAGTTTTTCTTTTTCC-GAGAAATCTTTT
131 ATAAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTTCTTTTGCCTG-GAAATCTTTT
* *
13414 CTTCGCCTTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGAATCGTTTCTCCTCA
195 CTTCGCC-TATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGTTTCTCCTAA
*
13479 CAGTCTCTTTTCTTTTCAAGATTGG
259 CAGTCTCCTTTCTTTTCAAGATTGG
13504 CGATAGTGAT
Statistics
Matches: 2887, Mismatches: 227, Indels: 41
0.92 0.07 0.01
Matches are distributed among these distances:
473 200 0.07
474 238 0.08
475 1308 0.45
476 1134 0.39
477 7 0.00
ACGTcount: A:0.29, C:0.21, G:0.14, T:0.37
Consensus pattern (475 bp):
CGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTCCCACCAATCGTTGTAAAGTCTAAGTT
CGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATTCTTTTTCTGATAAAGCACT
ATAAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTTCTTTTGCCTGGAAATCTTTTC
TTCGCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGTTTCTCCTAACA
GTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCGACATTGA
TGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCATCATTTTTGATAGAATCAACGTTTGTCTCTT
AAATAAGCCGAATATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAAACTT
AGTCTTCTCATTAGGATACA
Found at i:14390 original size:476 final size:476
Alignment explanation
Indices: 13504--23771 Score: 16342
Period size: 476 Copynumber: 21.6 Consensus size: 476
13494 TCAAGATTGG
* * *
13504 CGATAGTGATGCTTTGGTTTTGCAACAAAGGATTTTTTCCCACCAATCGTTGTAAAGTCTAAGTT
1 CGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTCCCACCAATCGTTGTAAAGTCTAAGTT
13569 CGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATTCTTTTTCCGATAAAGCACT
66 CGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATTCTTTTTCCGATAAAGCACT
* * *
13634 ACAAACACATTCTCCTTTTTAGGACAAAAGACATTAAAGTTTTTCTTTTGCCTCGAAATCTTTTC
131 ACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTTCTTTTGCCTGGAAATCTTTTC
* *
13699 TTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAACATCGATTCTCCTAAC
196 TTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGTTTCTCCTAAC
* *
13764 AGTCTCCTTTCTTTTCAACATTGGGATGCCAAAACACATTGCCTTTGTTAGGATACCCGACATTG
261 AGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCGACATTG
*
13829 ATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCATTTTTGATAGAATCAACGTTTGTTTCT
326 ATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCGTTTTTGATAGAATCAACGTTTGTTTCT
* * * *
13894 TAAGTAAGCCGAATATTAATACTCAAACTAATCCTCATTCTTTTTAAATTTAGGCACCATAAACC
391 TAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAAACA
***
13959 TAGTCTTCTCATTAGGATTGG
456 TAGTCTTCTCATTAGGATACA
* *
13980 CGATATTGATGCTTTGGTTTTGCAACAAAGGCTTTTTTCCCACCAATCGTTGTAAAGTCTTAGTT
1 CGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTCCCACCAATCGTTGTAAAGTCTAAGTT
14045 CGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATTCTTTTTCCGATAAAGCACT
66 CGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATTCTTTTTCCGATAAAGCACT
* * *
14110 ACAAACACATTCTCCTTTTTAGGACAAAAGACATTAAAGTTTTTCTTTTGCCTCGAAATCTTTTC
131 ACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTTCTTTTGCCTGGAAATCTTTTC
* *
14175 TTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAACATCGATTCTCCTAAC
196 TTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGTTTCTCCTAAC
* * *
14240 AGTCTCCTTTCTTTTCAACATTAGGATGCCAAAACACATTGCCTTTGTTAGGATACCCGACATTG
261 AGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCGACATTG
*
14305 ATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCATTTTTGATAGAATCAACGTTTGTTTCT
326 ATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCGTTTTTGATAGAATCAACGTTTGTTTCT
* * * *
14370 TAAGTAAGCCGAATATTAATACTCAAACTAATCCTCATTCTTTTTAAATTTAGGCACCATAAACC
391 TAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAAACA
***
14435 TAGTCTTCTCATTAGGATTGG
456 TAGTCTTCTCATTAGGATACA
* *
14456 CGATATTGATGCTTTGGTTTTGCAACAAAGGCTTTTTTCCCACCAATCGTTGTAAAGTCTTAGTT
1 CGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTCCCACCAATCGTTGTAAAGTCTAAGTT
14521 CGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATTCTTTTTCCGATAAAGCACT
66 CGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATTCTTTTTCCGATAAAGCACT
* *
14586 ACAAACACATTCTCCTTTTTAGGACAAAAGACATTAAAGTTTTTCTTTTGCCTGGAAATCTTTTC
131 ACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTTCTTTTGCCTGGAAATCTTTTC
* * *
14651 TTCGCTCTGTTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGTTTCTTCTAAC
196 TTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGTTTCTCCTAAC
*
14716 AGTCCCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCGACATTG
261 AGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCGACATTG
*
14781 ATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCATTTTTGATAGAATCAACGTTTGTTTCT
326 ATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCGTTTTTGATAGAATCAACGTTTGTTTCT
* * * *
14846 TAAGTAAGCCGAATATTAATACTCAAACTAATCCTCATTCTTTTTAAATTTAGGCACCATAAACC
391 TAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAAACA
***
14911 TAGTCTTCTCATTAGGATTGG
456 TAGTCTTCTCATTAGGATACA
* *
14932 CGATATTGATGCTTTGGTTTTGCAACAAAGGCTTTTTTCCCACCAATCGTTGTAAAGTCTTAGTT
1 CGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTCCCACCAATCGTTGTAAAGTCTAAGTT
* **
14997 CGTGCCTCAAATGAGAC-AATATGGATTCTAGTAATGATCTTCATTCTTATTCTAATAAAGCACT
66 CGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATTCTTTTTCCGATAAAGCACT
* * *
15061 ATAAACACATTCTCCTCTTTGGGACAAAAGACTTTGAAGTTTTTCTTTTGCCTGGAAATCTTTTC
131 ACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTTCTTTTGCCTGGAAATCTTTTC
* * *
15126 TTCGCTCTGTTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGTTTCTTCTAAC
196 TTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGTTTCTCCTAAC
* *
15191 AGTCCCCTTTCTTTTCAAGATTGGGAAGCCATAACACATTGCCTTTGTTAGGATACCCGACATTG
261 AGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCGACATTG
** * * * *
15256 ATGCTTTGGTGTCTTGAGAAAAGCTTTTCTTGGCATCCTTTTTGATAGAATCAACGTTTGTCTCT
326 ATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCGTTTTTGATAGAATCAACGTTTGTTTCT
* *
15321 TAAATAAGCCGAACTTTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAAACT
391 TAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAAACA
15386 TAGTCTTCTCATTAGGATACA
456 TAGTCTTCTCATTAGGATACA
* * * * *
15407 CGATATTGACGCTCTGGTTTCGCAACTAAGGCTTTCTTCCCACCAATCCTTGTAAAGTCTAAGTT
1 CGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTCCCACCAATCGTTGTAAAGTCTAAGTT
* * *
15472 CGTGCCTCAAATGAGACAAATATGTATTCTAGTAATGATCTTCATTCTTTTTCTGATAAAGCGCT
66 CGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATTCTTTTTCCGATAAAGCACT
* ** * *
15537 ATAAACACATTCTCCTGATTAGGACAAGAGACATTGAAGTTTTTCTTTT-TCTGAGAAATCTTTT
131 ACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTTCTTTTGCCTG-GAAATCTTTT
* * * * *
15601 CTTTGCCTTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGAATCATTTCTCCTTA
195 CTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGTTTCTCCTAA
* * * *
15666 CAGTCT-CTTTCTTTTTAAGATTGGGAAGCGAAAACACATTGCCTTTGTTAGTATACCCAACATT
260 CAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCGACATT
* * * * *
15730 GATGCTTTAGTGTCTCAAGAAAAGCTTTTCTTCGCATCGTTTTTAATAGAATCAATGTTTGTCTC
325 GATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCGTTTTTGATAGAATCAACGTTTGTTTC
*
15795 TTAAATATGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAAAC
390 TTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAAAC
*
15860 TTAGTCTTCTCATTAGGATACA
455 ATAGTCTTCTCATTAGGATACA
* * *
15882 CAATATTGATGCTTTGGTTTAGCAACAAAGGCTTTTTTCCCGCCAATCGTTGTAAAGTCTAAGTT
1 CGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTCCCACCAATCGTTGTAAAGTCTAAGTT
*
15947 CGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATTCTTTTTCCTATAAAGCACT
66 CGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATTCTTTTTCCGATAAAGCACT
* * *
16012 ACAAACACATTCTCCTTTTTAGGACAAAAGACATTAAAGTTTTTCTTTTGCCTCGAAATCTTTTC
131 ACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTTCTTTTGCCTGGAAATCTTTTC
* * *
16077 TTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTAAATAAGACAAACATCGATTCTCCTAAC
196 TTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGTTTCTCCTAAC
* * *
16142 AGTCTCCTTTCTTTTCAACATTGGGATGCCAAAACGCATTGCCTTTGTTAGGATACCCGACATTG
261 AGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCGACATTG
* * *
16207 ATGCTTTGGTGTCACAAGAAAAGCTTTTCTTCGCGTCATTTTTGATAGAATCAACGTTCGTTTCT
326 ATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCGTTTTTGATAGAATCAACGTTTGTTTCT
* * * *
16272 TAAATAAGCTGAATATTAATACTCAAACTAATCCTCATTCTTTTTAAATTTAGGCACCATAAACC
391 TAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAAACA
***
16337 TAGTCTTCTCATTAGGATTGG
456 TAGTCTTCTCATTAGGATACA
*
16358 CGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTCCCACCAATCGTTGTAAAGTCTAATTT
1 CGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTCCCACCAATCGTTGTAAAGTCTAAGTT
16423 CGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATTCTTTTT-CGATAAAGCACT
66 CGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATTCTTTTTCCGATAAAGCACT
* * * * **
16487 ACAAACACATTCTCATCTTTAGGACAAAAGACTTTGAAGTTTTTCTTTTTCTTATAAATCTTTTC
131 ACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTTCTTTTGCCTGGAAATCTTTTC
* * * * *
16552 TTTGCTCTATTTTTCTTAAAATGAAGGTTCTTCCCTTGAATAAGACAAGCATCGTTTCTCCTAAC
196 TTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGTTTCTCCTAAC
* *
16617 AATCTCCTTTCTTTTCAATATTGGGAAGCCAAAACACATTG-CTATTGTTAGGATACCCGACATT
261 AGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCT-TTGTTAGGATACCCGACATT
* * *
16681 GATGCTTTGGTGTCTCAAGAAAAGCTTCTCTTCACGTCGTTTTTGATAGAATCAACGTTTGTCTC
325 GATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCGTTTTTGATAGAATCAACGTTTGTTTC
*
16746 TTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACTATAAAC
390 TTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAAAC
*
16811 ATAGTCTTCTCATTAGAATACA
455 ATAGTCTTCTCATTAGGATACA
* *
16833 CGATATTGATGCTCTGGTTTCGCAACAAAGGCTTTTTTCCCACCAATAGTTGTAAAGTCTAAGTT
1 CGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTCCCACCAATCGTTGTAAAGTCTAAGTT
* * *
16898 CGTGCCTCAAATGAGACAAATACGGATTCTGGTAATGAACTTCATTCTTTTTCCGATAAAGCACT
66 CGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATTCTTTTTCCGATAAAGCACT
* *
16963 ACAAACACATTCTACTCTTTAGGATAAAAGACATTGAAGTTTTTCTTTTGCCTGGAAATCTTTTC
131 ACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTTCTTTTGCCTGGAAATCTTTTC
* *
17028 TTCGCCCTATTTTCCTTAAACTGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCCTAAC
196 TTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGTTTCTCCTAAC
*
17093 AGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGAGACCCGACATTG
261 AGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCGACATTG
17158 ATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCGTTTTTGATAGAATCAACGTTTGTTTCT
326 ATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCGTTTTTGATAGAATCAACGTTTGTTTCT
17223 TAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAAACA
391 TAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAAACA
*
17288 TAGTCTTCTCATTAGGATAGA
456 TAGTCTTCTCATTAGGATACA
* *
17309 CGATATTGATGCTTTGGTTT-GCAACAATGGCTTTTTTTCCCACCAATCGTTGTAAAGACTAAGT
1 CGATATTGATGCTTTGGTTTCGCAACAAAGGC-TTTTTTCCCACCAATCGTTGTAAAGTCTAAGT
* **
17373 TCGTGCCTCAAATGAGAC-AATATGGATTCTAGTAATGATCTTCATTCTTATTCTAATAAAGCAC
65 TCGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATTCTTTTTCCGATAAAGCAC
* * *
17437 TATAAACACATTCTCCTCTTTGGGACAAAAGACTTTGAAGTTTTTCTTTTGCCTGGAAATCTTTT
130 TACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTTCTTTTGCCTGGAAATCTTTT
* * *
17502 CTTCGCTCTGTTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGTTTCTTCTAA
195 CTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGTTTCTCCTAA
* *
17567 CAGTCCCCTTTCTTTTCAAGATTGGGAAGCCATAACACATTGCCTTTGTTAGGATACCCGACATT
260 CAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCGACATT
** * * * *
17632 GATGCTTTGGTGTCTTGAGAAAAGC-TTTCTTGGCATCCTTTTTGATAGAATCAACGTTTGTCTC
325 GATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCGTTTTTGATAGAATCAACGTTTGTTTC
*
17696 TTAAATAAGCCGAACTTTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAAAC
390 TTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAAAC
*
17761 TTAGTCTTCTCATTAGGATACA
455 ATAGTCTTCTCATTAGGATACA
* * * * *
17783 CGATATTGACGCTCTGGTTTCGCAACTAAGGCTTTCTTCCCACCAATCCTTGTAAAGTCTAAGTT
1 CGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTCCCACCAATCGTTGTAAAGTCTAAGTT
* * *
17848 CGTGCCTCAAATGAGACAAATATGTATTCTAGTAATGATCTTCATTCTTTTTCTGATAAAGCGCT
66 CGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATTCTTTTTCCGATAAAGCACT
* ** * *
17913 ATAAACACATTCTCCTGATTAGGACAAGAGACATTGAAGTTTTTCTTTT-TCTGAGAAATCTTTT
131 ACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTTCTTTTGCCTG-GAAATCTTTT
* * * *
17977 CTTTGCCTTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGAATCGATTCTCCTTA
195 CTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGTTTCTCC-TA
* *
18042 ACAGTCTCCTTTCTTTT-AAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGAGACCCAACAT
259 ACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCGACAT
* * *
18106 TGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCATCGTTTTTAATAGAATCAATGTTTGTTT
324 TGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCGTTTTTGATAGAATCAACGTTTGTTT
18171 CTTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAAA
389 CTTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAAA
*
18236 CATAGTCTTCTCATTAGGATAGA
454 CATAGTCTTCTCATTAGGATACA
* *
18259 CGATATTGATGCTTTGGGTTT-GCAACAATGGCTTTTTTTCCCACCAATCGTTGTAAAGACTAAG
1 CGATATTGATGCTTT-GGTTTCGCAACAAAGGC-TTTTTTCCCACCAATCGTTGTAAAGTCTAAG
* * *
18323 TTCGTGCCTCAAATGAGA-TAGTATGGATTCTAGTAATGATCTTCATTCTTTTTCCTATAAAGCA
64 TTCGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATTCTTTTTCCGATAAAGCA
* * *
18387 CTACATACACATTCTCCTCTTTAGGACAAAAGACTTTGAAGTTTTTCTTTTGGCTGGAAATCTTT
129 CTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTTCTTTTGCCTGGAAATCTTT
* * *
18452 TCTTCGCTCTATTTTCCTTAAAATGAAACTTCATCCCATGAATAAGACAAGCATCGTTTCTCCTA
194 TCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGTTTCTCCTA
* * *
18517 ACAATCTCCATTCCTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCGACAT
259 ACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCGACAT
* *
18582 TAATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCGTTTTTAATAGAATCAACGTTTGTCT
324 TGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCGTTTTTGATAGAATCAACGTTTGT-T
*
18647 T-TTAAATATGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAA
388 TCTTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAA
*
18711 ACATAGTTTTCTCATTAGGATACA
453 ACATAGTCTTCTCATTAGGATACA
* *
18735 CGATATTGATGCTTTGGTTTCGCAACAAAAGCTTTTTTCCCACCAATCGTTCTAAAGTCTAAGTT
1 CGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTCCCACCAATCGTTGTAAAGTCTAAGTT
*
18800 CGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATTCTTTTTCCTATAAAGCACT
66 CGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATTCTTTTTCCGATAAAGCACT
* * *
18865 ACAAACACATTCTCCTTTTTAGGACAAAAGACATTAAAGTTTTTCTTTTGCCTCGAAATCTTTTC
131 ACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTTCTTTTGCCTGGAAATCTTTTC
* * *
18930 TTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTAAATAAGACAAACATCGATTCTCCTAAC
196 TTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGTTTCTCCTAAC
* *
18995 AGTCTCCTTTCTTTTCAACATTGGGATGCCAAAACACATTGCCTTTGTTAGGATACCCGACATTG
261 AGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCGACATTG
* * *
19060 ATGCTTTGGTGTCACAAGAAAAGCTTTTCTTCGCGTCATTTTTGATAGAATCAACGTTCGTTTCT
326 ATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCGTTTTTGATAGAATCAACGTTTGTTTCT
* * * *
19125 TAAATAAGCTGAATATTAATACTCAAACTAATCCTCATTCTTTTTAAATTTAGGCACCATAAACC
391 TAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAAACA
***
19190 TAGTCTTCTCATTAGGATTGG
456 TAGTCTTCTCATTAGGATACA
*
19211 CGATATTGATGCTTTGGTTTTGCAACAAAGGCTTTTTTCCCACCAATCGTTGTAAAGTCTAAGTT
1 CGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTCCCACCAATCGTTGTAAAGTCTAAGTT
* *
19276 CGTGCCTCAAATGAGAC-AATATGGATTCTAGTAATGATCTTCATTCTTATTCTGATAAAGCACT
66 CGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATTCTTTTTCCGATAAAGCACT
* * *
19340 ATAAACACATTCTCCTCTTTGGGACAAAAGACTTTGAAGTTTTTCTTTTGCCTGGAAATCTTTTC
131 ACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTTCTTTTGCCTGGAAATCTTTTC
* *
19405 TTCGCTCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGTTTCTTCTAAC
196 TTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGTTTCTCCTAAC
* *
19470 AGTCCCCTTTCTTTTCATGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCGACATTG
261 AGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCGACATTG
* * * * *
19535 ATGCTTTGGTGTCTCAAGACAAGCTTTTCTTCGCGTCATTTTTTATAGAATTAACGTTTGTCTCT
326 ATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCGTTTTTGATAGAATCAACGTTTGTTTCT
* * *
19600 TAAATAAGCCAAACATTAATACTCAAACTAATACTCATTCCTTTTAGATTTAGGCACCATAAACA
391 TAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAAACA
*
19665 TAGTCTTCTCTTTAGGATACA
456 TAGTCTTCTCATTAGGATACA
* * * * *
19686 TGATATTGATGCTTTGGTTTCACAACTAAGGCTTTCTTCCCACCAATCGTTGTTAAGTCTAAGTT
1 CGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTCCCACCAATCGTTGTAAAGTCTAAGTT
* * *
19751 CGTGCCTCGAATGAGAC-AATATGGATTCTAGTAATGATCTTCATTCTTTTTTCGATAAAGTACT
66 CGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATTCTTTTTCCGATAAAGCACT
* * *
19815 ATAAACACATTCTCCTCTTTGGGACAAAAGACTTTGAAGTTTTTCTTTTGCCTGGAAATCTTTTC
131 ACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTTCTTTTGCCTGGAAATCTTTTC
* * *
19880 TTCGCTCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGTTTCTTCTAGC
196 TTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGTTTCTCCTAAC
* *
19945 AGTCCCCTTTCTTTTCAAGATTGGGAAGCCATAACACATTGCCTTTGTTAGGATACCCGACATTG
261 AGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCGACATTG
* * * * * *
20010 ATGCTTTGGTGTCTCGAGAAAAGCTTTTCTTGGCATCCTTTTTGATAGAATCAACATTTGTCTCT
326 ATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCGTTTTTGATAGAATCAACGTTTGTTTCT
* *
20075 TAAATAAGCCGAACTTTAATACTCAAACTAATGCTCATTCTTTTTAGATTTAGGCACCATAAAC-
391 TAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAAACA
20139 T-GTCTTCTCATTAGGATACA
456 TAGTCTTCTCATTAGGATACA
*
20159 CGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTCCCACCAATCGTTGTAAAGTCTAATTT
1 CGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTCCCACCAATCGTTGTAAAGTCTAAGTT
**
20224 CGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATTCTTTTTTTGATAAAGCACT
66 CGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATTCTTTTTCCGATAAAGCACT
* * * * **
20289 ACAAACACATTCTCATCTTTAGGACAAAAGACTTTGAAGTTTTTCTTTTTCTTATAAATCTTTTC
131 ACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTTCTTTTGCCTGGAAATCTTTTC
* * * * *
20354 TTTGCTCTATTTTTCTTAAAATGAAGGTTCTTCCCTTGAATAAGACAAGCATCGTTTCTCCTAAC
196 TTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGTTTCTCCTAAC
* *
20419 AATCTCCTTTCTTTTCAATATTGGGAAGCCAAAACACATTG-CTATTGTTAGGATACCCGACATT
261 AGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCT-TTGTTAGGATACCCGACATT
* * *
20483 GATGCTTTGGTGTCTCAAGAAAAGCTTCTCTTCACGTCGTTTTTGATAGAATCAACGTTTGTCTC
325 GATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCGTTTTTGATAGAATCAACGTTTGTTTC
*
20548 TTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACTATAAAC
390 TTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAAAC
*
20613 ATAGTCTTCTCATTAGAATACA
455 ATAGTCTTCTCATTAGGATACA
* *
20635 CGATATTGATGCTCTGGTTTCGCAACAAAGGCTTTTTTCCCACCAATAGTTGTAAAGTCTAAGTT
1 CGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTCCCACCAATCGTTGTAAAGTCTAAGTT
* * *
20700 CGTGCCTCAAATGAGACAAATACGGATTCTGGTAATGAACTTCATTCTTTTTCCGATAAAGCACT
66 CGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATTCTTTTTCCGATAAAGCACT
* *
20765 ACAAACACATTCTACTCTTTAGGATAAAAGACATTGAAGTTTTTCTTTTGCCTGGAAATCTTTTC
131 ACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTTCTTTTGCCTGGAAATCTTTTC
* *
20830 TTCGCCCTATTTTCCTTAAACTGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCCTAAC
196 TTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGTTTCTCCTAAC
*
20895 AGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGAGACCCGACATTG
261 AGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCGACATTG
*
20960 ATGGTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCGTTTTTGATAGAATCAACGTTTGTTTCT
326 ATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCGTTTTTGATAGAATCAACGTTTGTTTCT
21025 TAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAAACA
391 TAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAAACA
*
21090 TAGTCTTCTCATTAGGATAGA
456 TAGTCTTCTCATTAGGATACA
* *
21111 CGATATTGATGCTTTGGGTTT-GCAACAATGGCTTTTTTTCCCACCAATCGTTGTAAAGACTAAG
1 CGATATTGATGCTTT-GGTTTCGCAACAAAGGC-TTTTTTCCCACCAATCGTTGTAAAGTCTAAG
* * *
21175 TTCGTGCCTCAAATGAGA-TAGTATGGATTCTAGTAATGATCTTCATTCTTTTTCCTATAAAGCA
64 TTCGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATTCTTTTTCCGATAAAGCA
* * *
21239 CTACATACACATTCTCCTCTTTAGGACAAAAGACTTTGAAGTTTTTCTTTTGGCTGGAAATCTTT
129 CTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTTCTTTTGCCTGGAAATCTTT
* * *
21304 TCTTCGCTCTATTTTCCTTAAAATGAAACTTCATCCCATGAATAAGACAAGCATCGTTTCTCCTA
194 TCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGTTTCTCCTA
* *
21369 ACAATCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCGACAT
259 ACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCGACAT
* *
21434 TAATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCGTTTTTAATAGAATCAACGTTTGTCT
324 TGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCGTTTTTGATAGAATCAACGTTTGT-T
*
21499 T-TTAAATATGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAA
388 TCTTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAA
*
21563 ACATAGTTTTCTCATTAGGATACA
453 ACATAGTCTTCTCATTAGGATACA
* *
21587 CGATATTGATGCTTTGGTTTCGCAACAAAAGCTTTTTTCCCACCAATCGTTCTAAAGTCTAAGTT
1 CGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTCCCACCAATCGTTGTAAAGTCTAAGTT
21652 CGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATTCTTTTTCCGATAAAGCACT
66 CGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATTCTTTTTCCGATAAAGCACT
* * * *
21717 ACAAACACATTCTCCTTTTTAGGACAAAAGACATTAAAGTTTTTCTTTTGCCTCGAAATCTTTCC
131 ACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTTCTTTTGCCTGGAAATCTTTTC
* *
21782 TTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAACATCGATTCTCCTAAC
196 TTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGTTTCTCCTAAC
* * *
21847 AGTCTCCTTTCTTTTCAACATTGGGATGCCAAAACACATTGCCTTTGTTAGGATACCCGATATTG
261 AGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCGACATTG
* *
21912 ATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCATTTTTGATAGAATCAACGTTGGTTTCT
326 ATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCGTTTTTGATAGAATCAACGTTTGTTTCT
* * * *
21977 TAAATAAGCTGAATATTAATACTCAAACTAATCCTCATTCTTTTTAAATTTAGGCACCATAAACC
391 TAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAAACA
***
22042 TAGTCTTCTCATTAGGATTGG
456 TAGTCTTCTCATTAGGATACA
*
22063 CGATATTGATGCTTTGGTTTTGCAACAAAGGCTTTTTTCCCACCAATCGTTGTAAAGTCTAAGTT
1 CGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTCCCACCAATCGTTGTAAAGTCTAAGTT
* *
22128 CGTGCCTCAAATGAGAC-AATATGGATTCTAGTAATGATCTTCATTCTTATTCTGATAAAGCACT
66 CGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATTCTTTTTCCGATAAAGCACT
* * *
22192 ATAAACACATTCTCCTCTTTGGGACAAAAGACTTTGAAGTTTTTCTTTTGCCTGGAAATCTTTTC
131 ACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTTCTTTTGCCTGGAAATCTTTTC
* *
22257 TTCGCTCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGTTTCTTCTAAC
196 TTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGTTTCTCCTAAC
* *
22322 AGTCCCCTTTCTTTTCATGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCGACATTG
261 AGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCGACATTG
* * * * *
22387 ATGCTTTGGTGTCTCGAGAAAAGCTTTTCTTCGCGTCATTTTTTATAGAATTAACGTTTGTCTCT
326 ATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCGTTTTTGATAGAATCAACGTTTGTTTCT
* * *
22452 TAAATAAGCCAAACATTAATACTCAAACTAATACTCATTCCTTTTAGATTTAGGCACCATAAACA
391 TAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAAACA
*
22517 TAGTCTTCTCTTTAGGATACA
456 TAGTCTTCTCATTAGGATACA
* * * * *
22538 TGATATTGATGCTTTGGTTTCACAACTAAGGCTTTCTTCCCACCAATCGTTGTTAAGTCTAAGTT
1 CGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTCCCACCAATCGTTGTAAAGTCTAAGTT
* *
22603 CGTGCCTCAAATGAGAC-AATATGGATTCTAGTAATGATCTTCATTCTTTTTTCGATAAAGTACT
66 CGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATTCTTTTTCCGATAAAGCACT
* * *
22667 ATAAACACATTCTCCTCTTTGGGACAAAAGACTTTGAAGTTTTTCTTTTGCCTGGAAATCTTTTC
131 ACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTTCTTTTGCCTGGAAATCTTTTC
* *
22732 TTCGCTCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGTTTCTTCTAAC
196 TTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGTTTCTCCTAAC
* *
22797 AGTCCCCTTTCTTTTCGAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCGACATTG
261 AGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCGACATTG
* * * * *
22862 ATGCTTTGGTGTCTCGAGAAAAGCTTTTCTTGGCATCCTTTTTGATAGAATCAACGTTTGTCTCT
326 ATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCGTTTTTGATAGAATCAACGTTTGTTTCT
* * *
22927 TAAAAAAGCCGAACTTTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAAACT
391 TAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAAACA
22992 TAGTCTTCTCATTAGGATACA
456 TAGTCTTCTCATTAGGATACA
* * * * * *
23013 CGATATTGACGCTCTGGTTTCGCAACTAAGGCTTTCTTCGCACCAATCCTTGTAAAGTCTAAGTT
1 CGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTCCCACCAATCGTTGTAAAGTCTAAGTT
*
23078 CGTGCCTCAAATGAGACAAATATGTG-TTCTAGTAATGATCTTCATTCTTTTTCTGATAAAGCAC
66 CGTGCCTCAAATGAGACAAATATG-GATTCTAGTAATGATCTTCATTCTTTTTCCGATAAAGCAC
* ** * *
23142 TATAAACACATTCTCCTGATTAGGACAAGAGACATTGAAGTTTTTCTTTTTCC-GAGAAATCTTT
130 TACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTTCTTTTGCCTG-GAAATCTTT
* * * *
23206 TCTTCGCCTTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGAATCATTTCTCCTT
194 TCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGTTTCTCCTA
* * * * * *
23271 ACAGTCTCTTTTATTTTCAAGATTGGGAAGCGAAAACACATTGCCTTTGTTAGTATACCCAACAG
259 ACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCGACAT
* * * *
23336 TGATGCTTTAGTGTCTCAAGAAAAGCTTTTCTTCGCATCGTTTTTAATAGAATCAACGTTTGTCT
324 TGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCGTTTTTGATAGAATCAACGTTTGTTT
*
23401 CTTAAATATGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAAA
389 CTTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAAA
*
23466 CTTAGTCTTCTCATTAGGATACA
454 CATAGTCTTCTCATTAGGATACA
*
23489 CAATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTCCCACCAATCGTTGTAAAGTCTAAGTT
1 CGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTCCCACCAATCGTTGTAAAGTCTAAGTT
*
23554 CGTGCCACAAATGAGAC-AATATGGATTCTAGTAATGATCTTCATTCTTTTTCCGATAAAGCACT
66 CGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATTCTTTTTCCGATAAAGCACT
* * *
23618 ACAAACACATTCTCCTCATTAGGACAAGAGACATTGAAGTTTTTCTTTT-TCTGAGAAATCTTTT
131 ACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTTCTTTTGCCTG-GAAATCTTTT
* * * *
23682 CTTCACCTTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGAATCGTTTCTCCTCA
195 CTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGTTTCTCCTAA
*
23747 CAGTCTCTTTTCTTTTCAAGATTGG
260 CAGTCTCCTTTCTTTTCAAGATTGG
23772 CGATAGTGAT
Statistics
Matches: 9097, Mismatches: 658, Indels: 75
0.93 0.07 0.01
Matches are distributed among these distances:
473 95 0.01
474 531 0.06
475 3778 0.42
476 4578 0.50
477 115 0.01
ACGTcount: A:0.29, C:0.21, G:0.14, T:0.37
Consensus pattern (476 bp):
CGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTCCCACCAATCGTTGTAAAGTCTAAGTT
CGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATTCTTTTTCCGATAAAGCACT
ACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTTCTTTTGCCTGGAAATCTTTTC
TTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGTTTCTCCTAAC
AGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCGACATTG
ATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCGTTTTTGATAGAATCAACGTTTGTTTCT
TAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAAACA
TAGTCTTCTCATTAGGATACA
Found at i:24011 original size:284 final size:283
Alignment explanation
Indices: 23495--24055 Score: 901
Period size: 284 Copynumber: 2.0 Consensus size: 283
23485 TACACAATAT
* *
23495 TGATGCTTTGGTTTCGCAACAAAGGCTTTTTTCCCACCAATCGTTGTAAAGTCTAAGTTCGTGCC
1 TGATGCTTTGGTTTCGCAACAAAGGATTTTTCCCCACCAATCGTTGTAAAGTCTAAGTTCGTGCC
23560 ACAAATGAGACAATATGGATTCTAGTAATGATCTTCATTCTTTTTCCGATAAAGCACTACAAACA
66 ACAAATGAGACAATATGGATTCTAGTAATGATCTTCATTCTTTTTCCGATAAAGCACTACAAACA
* * * * * *
23625 CATTCTCCTCATTAGGACAAGAGACATTGAAGTTTTTCTTTTTCTGAGAAATCTTTTCTTCACCT
131 CATTCTCCTCATTAAGACAAAAGACATTAAAGTTTTTCTTTTCCTGAGAAATCTTTCCTTCACCC
* * *
23690 TATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGA-ATCGTTTCTCCTCACAGTCTC
196 TATTTTCCTTAAAATGAAAGTTCATCCCTTAAATAAGACAA-ACATCGATTCTCCTAACAGTCTC
* *
23754 TTTTCTTTTCAAGATTGGCGATAG
260 CTTTCTTTTCAACATTGGCGATAG
*
23778 TGATGCTTTGGTTTTGCAACAAAGGATTTTTCCCCACCAATCGTTGTAAAGTCTAAGTTCGTGCC
1 TGATGCTTTGGTTTCGCAACAAAGGATTTTTCCCCACCAATCGTTGTAAAGTCTAAGTTCGTGCC
*
23843 TCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATTCTTTTTCCGATAAAGCACTACAAAC
66 ACAAATGAGAC-AATATGGATTCTAGTAATGATCTTCATTCTTTTTCCGATAAAGCACTACAAAC
** * * *
23908 ACATTCTCCTTTTTAAGACAAAAGGCATTAAAGTTTTTCTTTTGCCT-CGAAATCTTTCCTTCGC
130 ACATTCTCCTCATTAAGACAAAAGACATTAAAGTTTTTCTTTT-CCTGAGAAATCTTTCCTTCAC
23972 CCTATTTTCCTTAAAATGAAAGTTCATCCCTTAAATAAGACAAACATCGATTCTCCTAACAGTCT
194 CCTATTTTCCTTAAAATGAAAGTTCATCCCTTAAATAAGACAAACATCGATTCTCCTAACAGTCT
24037 CCTTTCTTTTCAACATTGG
259 CCTTTCTTTTCAACATTGG
24056 GATGCCAAAA
Statistics
Matches: 255, Mismatches: 20, Indels: 5
0.91 0.07 0.02
Matches are distributed among these distances:
283 73 0.29
284 180 0.71
285 2 0.01
ACGTcount: A:0.29, C:0.22, G:0.14, T:0.36
Consensus pattern (283 bp):
TGATGCTTTGGTTTCGCAACAAAGGATTTTTCCCCACCAATCGTTGTAAAGTCTAAGTTCGTGCC
ACAAATGAGACAATATGGATTCTAGTAATGATCTTCATTCTTTTTCCGATAAAGCACTACAAACA
CATTCTCCTCATTAAGACAAAAGACATTAAAGTTTTTCTTTTCCTGAGAAATCTTTCCTTCACCC
TATTTTCCTTAAAATGAAAGTTCATCCCTTAAATAAGACAAACATCGATTCTCCTAACAGTCTCC
TTTCTTTTCAACATTGGCGATAG
Found at i:24520 original size:759 final size:759
Alignment explanation
Indices: 23013--24530 Score: 2355
Period size: 759 Copynumber: 2.0 Consensus size: 759
23003 TTAGGATACA
* * * *
23013 CGATATTGACGCTCTGGTTTCGCAACTAAGGCTTTCTTCGCACCAATCCTTGTAAAGTCTAAGTT
1 CGATAGTGACGCTCTGGTTTCGCAACAAAGGATTTCTTCCCACCAATCCTTGTAAAGTCTAAGTT
*
23078 CGTGCCTCAAATGAGACAAATATGTGTTCTAGTAATGATCTTCATTCTTTTTCTGATAAAGCACT
66 CGTGCCTCAAATGAGACAAATATGTGTTCTAGTAATGATCTTCATTCTTTTTCCGATAAAGCACT
* * * * * *
23143 ATAAACACATTCTCCTGATTAGGACAAGAGACATTGAAGTTTTTCTTTTTCCGAGAAATCTTTTC
131 ACAAACACATTCTCCTGATTAAGACAAAAGACATTAAAGTTTTTCTTTTGCCGAGAAATCTTTCC
* * *
23208 TTCGCCTTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGAATCATTTCTCCTTAC
196 TTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTAAATAAGACAAGAATCATTTCTCCTAAC
* * * * *
23273 AGTCTCTTTTATTTTCAAGATTGGGAAGCGAAAACACATTGCCTTTGTTAGTATACCCAACAGTG
261 AGTCTCCTTTATTTTCAACATTGGGAAGCCAAAAAACATTGCCTTTGTTAGGATACCCAACAGTG
*
23338 ATGCTTTAGTGTCTCAAGAAAAGCTTTTCTTCGCATCGTTTTTAATAGAATCAACGTTTGTCTCT
326 ATGCTTTAGTGTCTCAAGAAAAGCTTTTCTTCGCATCATTTTTAATAGAATCAACGTTTGTCTCT
* * *
23403 TAAATATGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAAACT
391 TAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAAATTTAGGCACCATAAACC
23468 TAGTCTTCTCATTAGGATACACAATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTCCCACC
456 TAGTCTTCTCATTAGGATACACAATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTCCCACC
23533 AATCGTTGTAAAGTCTAAGTTCGTGCCACAAATGAGACAATATGGATTCTAGTAATGATCTTCAT
521 AATCGTTGTAAAGTCTAAGTTCGTGCCACAAATGAGACAATATGGATTCTAGTAATGATCTTCAT
* *
23598 TCTTTTTCCGATAAAGCACTACAAACACATTCTCCTCATTAGGACAAGAGACATTGAAGTTTTTC
586 TCTTATTCCGATAAAGCACTACAAACACATTCTCCTCATTAGGACAAAAGACATTGAAGTTTTTC
*
23663 TTTTTCTGAGAAATCTTTTCTTCACCTTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGA
651 TTTTCCTGAGAAATCTTTTCTTCACCTTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGA
* * *
23728 CAAGAATCGTTTCTCCTCACAGTCTCTTTTCTTTTCAAGATTGG
716 CAAGAATCGTTTCTCCTAACAGTCCCCTTTCTTTTCAAGATTGG
* * * *
23772 CGATAGTGATGCTTTGGTTTTGCAACAAAGGATTT-TTCCCCACCAATCGTTGTAAAGTCTAAGT
1 CGATAGTGACGCTCTGGTTTCGCAACAAAGGATTTCTT-CCCACCAATCCTTGTAAAGTCTAAGT
23836 TCGTGCCTCAAATGAGACAAATATG-GATTCTAGTAATGATCTTCATTCTTTTTCCGATAAAGCA
65 TCGTGCCTCAAATGAGACAAATATGTG-TTCTAGTAATGATCTTCATTCTTTTTCCGATAAAGCA
** * **
23900 CTACAAACACATTCTCCTTTTTAAGACAAAAGGCATTAAAGTTTTTCTTTTGCCTCGAAATCTTT
129 CTACAAACACATTCTCCTGATTAAGACAAAAGACATTAAAGTTTTTCTTTTGCCGAGAAATCTTT
23965 CCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTAAATAAGACAA-ACATCGA-TTCTCC
194 CCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTAAATAAGACAAGA-ATC-ATTTCTCC
* * * *
24028 TAACAGTCTCCTTTCTTTTCAACATTGGGATGCCAAAAAACATTGCCTTTGTTAGGATACCCGAT
257 TAACAGTCTCCTTTATTTTCAACATTGGGAAGCCAAAAAACATTGCCTTTGTTAGGATACCCAAC
* * * * *
24093 ATTGATGCTTTGGTGTCTCAGGAAAAGCTTTTCTTCGCGTCATTTTTGATAGAATCAACGTTTGT
322 AGTGATGCTTTAGTGTCTCAAGAAAAGCTTTTCTTCGCATCATTTTTAATAGAATCAACGTTTGT
* * *
24158 TTCTTAAATAAGCTGAATATTAATACTCAAACTAATCCTCATTCTTTTTAAATTTAGGCACCATA
387 CTCTTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAAATTTAGGCACCATA
*** * *
24223 AACCTAGTCTTCTCATTAGGATTGGCGATATTGATGCTTTGGTTTTGCAACAAAGGCTTTTTTCC
452 AACCTAGTCTTCTCATTAGGATACACAATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTCC
* *
24288 CACCAATCGTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAATATGGATTCTAGTAATGATCT
517 CACCAATCGTTGTAAAGTCTAAGTTCGTGCCACAAATGAGACAATATGGATTCTAGTAATGATCT
* * * * *
24353 TCATTCTTATTCTGATAAAGCACTATAAACACATTCTCCTCTTTGGGACAAAAGACTTTGAAGTT
582 TCATTCTTATTCCGATAAAGCACTACAAACACATTCTCCTCATTAGGACAAAAGACATTGAAGTT
*
24418 TTTCTTTTGCCTG-GAAATCTTTTCTTC-GCTCTATTTTCCTTAAAATGAAAGTTCATCCCTTGA
647 TTTCTTTT-CCTGAGAAATCTTTTCTTCACCT-TATTTTCCTTAAAATGAAAGTTCATCCCTTGA
* *
24481 ATAAGACAAGCATCGTTTCTTCTAACAGTCCCCTTTCTTTTCAAGATTGG
710 ATAAGACAAGAATCGTTTCTCCTAACAGTCCCCTTTCTTTTCAAGATTGG
24531 GCAGCCAAAA
Statistics
Matches: 688, Mismatches: 65, Indels: 12
0.90 0.08 0.02
Matches are distributed among these distances:
758 6 0.01
759 678 0.99
760 4 0.01
ACGTcount: A:0.29, C:0.20, G:0.14, T:0.37
Consensus pattern (759 bp):
CGATAGTGACGCTCTGGTTTCGCAACAAAGGATTTCTTCCCACCAATCCTTGTAAAGTCTAAGTT
CGTGCCTCAAATGAGACAAATATGTGTTCTAGTAATGATCTTCATTCTTTTTCCGATAAAGCACT
ACAAACACATTCTCCTGATTAAGACAAAAGACATTAAAGTTTTTCTTTTGCCGAGAAATCTTTCC
TTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTAAATAAGACAAGAATCATTTCTCCTAAC
AGTCTCCTTTATTTTCAACATTGGGAAGCCAAAAAACATTGCCTTTGTTAGGATACCCAACAGTG
ATGCTTTAGTGTCTCAAGAAAAGCTTTTCTTCGCATCATTTTTAATAGAATCAACGTTTGTCTCT
TAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAAATTTAGGCACCATAAACC
TAGTCTTCTCATTAGGATACACAATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTCCCACC
AATCGTTGTAAAGTCTAAGTTCGTGCCACAAATGAGACAATATGGATTCTAGTAATGATCTTCAT
TCTTATTCCGATAAAGCACTACAAACACATTCTCCTCATTAGGACAAAAGACATTGAAGTTTTTC
TTTTCCTGAGAAATCTTTTCTTCACCTTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGA
CAAGAATCGTTTCTCCTAACAGTCCCCTTTCTTTTCAAGATTGG
Found at i:25051 original size:476 final size:476
Alignment explanation
Indices: 23772--32521 Score: 13755
Period size: 476 Copynumber: 18.4 Consensus size: 476
23762 TCAAGATTGG
* * * *
23772 CGATAGTGATGCTTTGGTTTTGCAACAAAGGATTTTTCCCCACCAATCGTTGTAAAGTCTAAGTT
1 CGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTCCCACCAATCGTTGTAAAGTCTAAGTT
*
23837 CGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATTCTTTTTCCGATAAAGCACT
66 CGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATTCTTTTTCTGATAAAGCACT
* * * * * *
23902 ACAAACACATTCTCCTTTTTAAGACAAAAGGCATTAAAGTTTTTCTTTTGCCTCGAAATCTTTCC
131 ACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTTCTTTTGCCTGGAAATCTTTTC
* *
23967 TTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTAAATAAGACAAACATCGATTCTCCTAAC
196 TTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCCTAAC
* * * *
24032 AGTCTCCTTTCTTTTCAACATTGGGATGCCAAAAAACATTGCCTTTGTTAGGATACCCGATATTG
261 AGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCGACATTG
* * *
24097 ATGCTTTGGTGTCTCAGGAAAAGCTTTTCTTCGCGTCATTTTTGATAGAATCAACGTTTGTTTCT
326 ATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCGTTTTTGATAGAATCAACGTTTGTCTCT
* * * *
24162 TAAATAAGCTGAATATTAATACTCAAACTAATCCTCATTCTTTTTAAATTTAGGCACCATAAACC
391 TAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAAACA
***
24227 TAGTCTTCTCATTAGGATTGG
456 TAGTCTTCTCATTAGGATACA
*
24248 CGATATTGATGCTTTGGTTTTGCAACAAAGGCTTTTTTCCCACCAATCGTTGTAAAGTCTAAGTT
1 CGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTCCCACCAATCGTTGTAAAGTCTAAGTT
* *
24313 TGTGCCTCAAATGAGAC-AATATGGATTCTAGTAATGATCTTCATTCTTATTCTGATAAAGCACT
66 CGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATTCTTTTTCTGATAAAGCACT
* * *
24377 ATAAACACATTCTCCTCTTTGGGACAAAAGACTTTGAAGTTTTTCTTTTGCCTGGAAATCTTTTC
131 ACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTTCTTTTGCCTGGAAATCTTTTC
* * *
24442 TTCGCTCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGTTTCTTCTAAC
196 TTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCCTAAC
* *
24507 AGTCCCCTTTCTTTTCAAGATTGGGCAGCCAAAACACATTGCCTTTGTTAGGATACCCGACATTG
261 AGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCGACATTG
* * * *
24572 ATGCTTTGGTGTCTCGAGAAAAGCTTTTCTTGGCATCCTTTTTGATAGAATCAACGTTTGTCTCT
326 ATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCGTTTTTGATAGAATCAACGTTTGTCTCT
* * *
24637 TAAATAAGCCGAACTTTAATATTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAAACT
391 TAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAAACA
24702 TAGTCTTCTCATTAGGATACA
456 TAGTCTTCTCATTAGGATACA
* * * * * *
24723 CGATATTGATGCTCTGGTTTCGCAACTAAGGGTTTCTTCCCTCCAATCCTTGTAAAGTCTAAGTT
1 CGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTCCCACCAATCGTTGTAAAGTCTAAGTT
* *
24788 CGTGCCTCAAATGAGACAAATATGTATTCTAGTAATGATCTTCATTCTTTTTCTGATAAAGCGCT
66 CGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATTCTTTTTCTGATAAAGCACT
* ** * **
24853 ATAAACACATTCTCCTGATTAGGACAAGAGACATTGAAGTTTTTCTTTTTTC-GAGAAATCTTTT
131 ACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTTCTTTTGCCTG-GAAATCTTTT
* * * *
24917 CTTTGCCTTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGAATC-ATTTCTCCTT
195 CTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGA-TTCTCCTA
* * * *
24981 ACAGTCTCTTTTCTTTTCAAGATTGGGAAGCGAAAACACATTGCCTTTGTTAGTATACCCAACAT
259 ACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCGACAT
* * *
25046 TGATGCTTTAGTGTCTCAAGAAAAGCTTTTCTTCGCATCGTTTTTAATAGAATCAACGTTTGTCT
324 TGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCGTTTTTGATAGAATCAACGTTTGTCT
*
25111 CTTAAATATGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAAA
389 CTTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAAA
*
25176 CTTAGTCTTCTCATTAGGATACA
454 CATAGTCTTCTCATTAGGATACA
* * *
25199 CAATATTGATGCTTTGGTTTAGCAACAAAGGCTTTTTTCCCACCAATCGTTGTAAAGTCTATGTT
1 CGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTCCCACCAATCGTTGTAAAGTCTAAGTT
*
25264 CGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATTCTTTTTCCGATAAAGCACT
66 CGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATTCTTTTTCTGATAAAGCACT
* * *
25329 ACAAACACATTCTCCTTTTTAGGACAAAAGACATTAAAGTTTTTCTTTTGCCTCGAAATCTTTTC
131 ACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTTCTTTTGCCTGGAAATCTTTTC
* *
25394 TTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTAAATAAGACAAACATCGATTCTCCTAAC
196 TTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCCTAAC
* * *
25459 AGTCTCCTTTCTTTTCAACATTGGGATGCCAAAACACATTGCCTTTGTTAGGATACCCAACATTG
261 AGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCGACATTG
* * * * *
25524 ATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCTCGTCATTTTTTATAGAATCAATGTTTGTTTCT
326 ATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCGTTTTTGATAGAATCAACGTTTGTCTCT
* * *
25589 TAAATAAGCCGAATATTAATACTCAAACTAATCCTCATTCTTTTTAAATTTAGGCACCATAAACC
391 TAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAAACA
***
25654 TAGTCTTCTCATTAGGATTGG
456 TAGTCTTCTCATTAGGATACA
*
25675 CGATATTGATGCTTTGGTTTTGCAACAAAGGCTTTTTTCCCACCAATCGTTGTAAAGTCTAAGTT
1 CGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTCCCACCAATCGTTGTAAAGTCTAAGTT
*
25740 CGTGCCTCAAATGAGAC-AATATGGATTCTAGTAATGATCTTCATTCTTATTCTGATAAAGCACT
66 CGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATTCTTTTTCTGATAAAGCACT
* * *
25804 ATAAACACATTCTCCTCTTTGGGACAAAAGACTTTGAAGTTTTTCTTTTGCCTGGAAATCTTTTC
131 ACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTTCTTTTGCCTGGAAATCTTTTC
* * *
25869 TTCGCTCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGTTTCTTCTAAC
196 TTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCCTAAC
*
25934 AGTCCCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCGACATTG
261 AGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCGACATTG
* * *
25999 ATGCTTTGGT-TCTCAAGACAAGCTTTTCTTCGCATCGTTTTTAATAGAATCAACGTTTGTCTCT
326 ATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCGTTTTTGATAGAATCAACGTTTGTCTCT
*
26063 TAAA-AATGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCGCCATAAAC
391 TAAATAA-GCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAAAC
*
26127 TTAGTCTTCTCATTAGGATACA
455 ATAGTCTTCTCATTAGGATACA
*
26149 CGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTCCCACCAATCATTGTAAAGTCTAAGTT
1 CGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTCCCACCAATCGTTGTAAAGTCTAAGTT
* * *
26214 CGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTTATTCTTTTTCCGGTAAAGCACT
66 CGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATTCTTTTTCTGATAAAGCACT
* * * * *
26279 ACAAACACATTTTCTTCTTTAGGGCAATAGACATTAAAGTTTTTCTTTTGCCTGGAAATCTTTTC
131 ACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTTCTTTTGCCTGGAAATCTTTTC
* *
26344 TTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAACATCGATTCT-TTAAC
196 TTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCCTAAC
* * *
26408 AGTCTCCTTTCTTTTCAACATTGGAAAGCCAAAACACATTGCCTTTGTTAGGAGACCCGACATTG
261 AGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCGACATTG
* * *
26473 ATGCTTTGGTGTCTCAAGAAATGCTTTTCTTCGTGTCGTTTTTGATAGAATCAACGTTTGTTTCT
326 ATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCGTTTTTGATAGAATCAACGTTTGTCTCT
* *
26538 TAAATAAGCTGAACATTAATACTC-AACTAATCCTCATTCTTTTTAAATTTAGGCACCATAAACA
391 TAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAAACA
* ***
26602 TAGTCCTCTCATTAGGATTGG
456 TAGTCTTCTCATTAGGATACA
* * *
26623 CGATAGTGATGCTTTGGTTTTGCAACAAAGGATTTTTTCCCACCAATCGTTGTAAAGTCTAAGTT
1 CGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTCCCACCAATCGTTGTAAAGTCTAAGTT
* *
26688 CGTGCCACAAATGAGAC-AATATGGATTCTAGTAATGATCTTCATTCTTTTTCCGATAAAGCACT
66 CGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATTCTTTTTCTGATAAAGCACT
*
26752 ACAAACACATTCTCCTCTTTAGGACAAAAGACATTGATGTTTTTCTTTTGCCTGGAAATCTTTTC
131 ACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTTCTTTTGCCTGGAAATCTTTTC
* * * *
26817 TTCACCCTATTTTCATTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTATCCTAAT
196 TTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCCTAAC
26882 AGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTG-CTATTGTTAGGATACCCGACATT
261 AGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCT-TTGTTAGGATACCCGACATT
* *
26946 GATGCTTTGGTGTCTCAAGAAAAGCTTCTCTTCACGTCGTTTTTGATAGAATCAACGTTTGTCTC
325 GATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCGTTTTTGATAGAATCAACGTTTGTCTC
* *
27011 TTAAAAAAGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCGCCATAAAC
390 TTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAAAC
* *
27076 TTAGTTTTCTCATTAGGATACA
455 ATAGTCTTCTCATTAGGATACA
*
27098 CGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTCCCACCAATCATTGTAAAGTCTAAGTT
1 CGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTCCCACCAATCGTTGTAAAGTCTAAGTT
* * *
27163 CGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTTATTCTTTTTCCGGTAAAGCACT
66 CGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATTCTTTTTCTGATAAAGCACT
* * * * *
27228 ACAAACACATTCTCTTCTTTAGGGCAATAGACATTAAAGTTTTTCTTTTTCCTGGAAATCTTTTC
131 ACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTTCTTTTGCCTGGAAATCTTTTC
* *
27293 TTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAAAC-AGACATCGATTCT-TTAA
196 TTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAG-CATCGATTCTCCTAA
* *
27356 CAGTCTCCTTTCTTTTCAACATTGGGAAGCCAAAACACATTGCCTTTGTTAGGAGACCCGACATT
260 CAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCGACATT
*
27421 GATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCGTTTTTGATAGAATCAACGTTTGTTTC
325 GATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCGTTTTTGATAGAATCAACGTTTGTCTC
* *
27486 TTAAATAAGCTGAACATTAATACTCAAACTAATCCTCATTCTTTTTAAATTTAGGCACCATAAAC
390 TTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAAAC
* ***
27551 ATAGTCCTCTCATTAGGATTGG
455 ATAGTCTTCTCATTAGGATACA
* * *
27573 CGATAGTGATGCTTTGGTTTTGCAACAAAGGATTTTTTCCCACCAATCGTTGTAAAGTCTAAGTT
1 CGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTCCCACCAATCGTTGTAAAGTCTAAGTT
* *
27638 CGTGCCACAAATGAGAC-AATATGGATTCTAGTAATGATCTTCATTCTTTTTCCGATAAAGCACT
66 CGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATTCTTTTTCTGATAAAGCACT
* * * *
27702 ACAAACACATTCTCATCTTTAGGACAAAAGACTTTGAAGTTTTTCTTTT-TCTGATAAATCTTTT
131 ACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTTCTTTTGCCTG-GAAATCTTTT
* * * * *
27766 CTTTGCACTATTTTCCTTAAAATGAAGGTTCTTCCCTTGAATAAGACAAGCATCGTTTCTCCTAA
195 CTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCCTAA
* * * * *
27831 CAATCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACAAATAG-CTATTTTTAGGATACTCGACAT
260 CAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCT-TTGTTAGGATACCCGACAT
*
27895 TGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCACGTCGTTTTTGATAGAATCAACGTTTGTCT
324 TGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCGTTTTTGATAGAATCAACGTTTGTCT
*
27960 CTTAAATAAGCCGAACTTTAATACTCAAACTAA-CCTCATTCTTTTTAGATTTAGGCACCATAAA
389 CTTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAAA
* *
28024 CTTAGTCCTCTCATTAGGATACA
454 CATAGTCTTCTCATTAGGATACA
* * * * *
28047 CGATATTGATGCTCTT-CTTTCGCAACTAAGGCTTTCTTCCCACCAATCCTTGTAAAGACTAAGT
1 CGATATTGATGCT-TTGGTTTCGCAACAAAGGCTTTTTTCCCACCAATCGTTGTAAAGTCTAAGT
* *
28111 TCGTGCCTCAAATGAGAC-AATATGGATTCTTGTAATGATCTTCATTCTTATTCTGATAAAGCAC
65 TCGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATTCTTTTTCTGATAAAGCAC
** * *
28175 TATGAACACATTCTCCTCTTTGGGACAAAAGACTTTGAAGTTTTTCTTTTGCCTGGAAATCTTTT
130 TACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTTCTTTTGCCTGGAAATCTTTT
* * *
28240 CTTCGCTCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGTTTCTTCTAA
195 CTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCCTAA
*
28305 CAGTCCCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTG-CTATTGTTAGGATACCCGACAT
260 CAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCT-TTGTTAGGATACCCGACAT
* * *
28369 TGATGCTTTGGTGTCTCAAGAAAAGCTTCTCTTCACATCGTTTTTGATAGAATCAACGTTTGTCT
324 TGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCGTTTTTGATAGAATCAACGTTTGTCT
*
28434 CTTAAATAAGCCGAACTTTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAAA
389 CTTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAAA
*
28499 CTTAGTCTTCTCATTAGGATACA
454 CATAGTCTTCTCATTAGGATACA
* *
28522 CGATATTGATGCTCTGGTTTCGCAACAAAGGTTTTTTTCCCACCAATCGTTGTAAAGTCTAAGTT
1 CGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTCCCACCAATCGTTGTAAAGTCTAAGTT
* * * * *
28587 CGTGCCTCAAATGAGACAAACACGGATTCTAGTAATGAACTTCATTCTTTTCCCGATAAAGCACT
66 CGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATTCTTTTTCTGATAAAGCACT
*
28652 ACAAACACATTCTCCTCTTTGGGACAAAAGACATTGAAGTTTTTCTTTTGCCTGGAAATCTTTTC
131 ACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTTCTTTTGCCTGGAAATCTTTTC
* * * * *
28717 TTCTCCATATTTTGCTTAAAATGAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCCTAAT
196 TTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCCTAAC
* * * *** * * *
28782 AGTCTCCATTATTTTCAAGATTGGGAAGCTAAAACACATTGCCTCCATTCGCATACACGACATTG
261 AGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCGACATTG
* *
28847 ATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGTGTCGTTTTTGATAGAATTAACGTTTGTCTCT
326 ATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCGTTTTTGATAGAATCAACGTTTGTCTCT
* * * * *
28912 TAAAAAAGCCAAACATTAATACTCAAACTAATACTCATTCCTTTTAGAGTTAGGCACCATAAACA
391 TAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAAACA
*
28977 TAGTCTTCTCGTTAGGATACA
456 TAGTCTTCTCATTAGGATACA
* *
28998 CGATATTGATGCTTTGGTTTCACAACAAAGGCTTTCTTCCCACCAATCGTTGTAAAGTCTAAGTT
1 CGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTCCCACCAATCGTTGTAAAGTCTAAGTT
* * * **
29063 CTTGCCTCAAATGAGACAAATAAGGATTCTAGTAATGAACTTCATTCTTTTTCCAATAAAGCACT
66 CGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATTCTTTTTCTGATAAAGCACT
*
29128 ACAAACACATTCTCCTCTTTAGGACAAAAGACATTGATGTTTTTCTTTTGCCTGGAAATCTTTTC
131 ACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTTCTTTTGCCTGGAAATCTTTTC
* * * *
29193 TTCACCCTATTTTCTTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTATCCTAAT
196 TTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCCTAAC
*
29258 AGTCTCCTTTCTTTTCAAGATTGAGAAGCCAAAACACATTG-CTATTGTTAGGATACCCGACATT
261 AGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCT-TTGTTAGGATACCCGACATT
* *
29322 GATGCTTTGGTGTCTCAAGAAAAGCTTCTCTTCACGTCGTTTTTGATAGAATCAACGTTTGTCTC
325 GATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCGTTTTTGATAGAATCAACGTTTGTCTC
* *
29387 TTAAATAAGCTGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACTATAAAC
390 TTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAAAC
29452 ATAGTCTTCTCATTAGGATACA
455 ATAGTCTTCTCATTAGGATACA
* *
29474 CGATATTGATGCTCTGGTTTCGCAACAAAGGCTTTTTTCCCACTAATCGTTGTAAAGTCTAAGTT
1 CGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTCCCACCAATCGTTGTAAAGTCTAAGTT
* * * *
29539 CGTGCCTCAAATGAGACAAATACGGATTCTGGTAATGAACTTCATTCTTTTTTTGATAAAGCACT
66 CGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATTCTTTTTCTGATAAAGCACT
* *
29604 ACAAACACATTCTACTCTTTAGGATAAAAGACATTGAAGTTTTTCTTTTGCCTGGAAATCTTTTC
131 ACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTTCTTTTGCCTGGAAATCTTTTC
* *
29669 TTCGCCCTATTTTCCTTAAACTGAAAGTTCATCCCTTGAATAGGACAAGCATCGATTCTCCTAAC
196 TTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCCTAAC
*
29734 AGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGAAGACCCGACATT
261 AGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGG-ATACCCGACATT
*
29799 GATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCGTTTTTGATAGAATCAACGTTTGTTTC
325 GATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCGTTTTTGATAGAATCAACGTTTGTCTC
*
29864 TTAAATAAGCCGAACGTTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAAAC
390 TTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAAAC
*
29929 ATAGTCTTCTCATTAGGATAGA
455 ATAGTCTTCTCATTAGGATACA
* * *
29951 CGTTATTGATGCTTTGGGTTT-GCAACAATGGCTTTTTTCCCACCAATCGTTGTAAAGACTAAGT
1 CGATATTGATGCTTT-GGTTTCGCAACAAAGGCTTTTTTCCCACCAATCGTTGTAAAGTCTAAGT
* *
30015 TCGTGCCTCAAATGAGA-TAGTATGGATTCTAGTAATGATCTTCATTCTTTTTCCT-ATAAAGCA
65 TCGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATTCTTTTT-CTGATAAAGCA
* *
30078 CTACATACACATTCTCCTCTTTAGGACAAAAGACTTTGAAGTTTTTCTTTTGCCTGGAAATCTTT
129 CTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTTCTTTTGCCTGGAAATCTTT
* * *
30143 TCTTCGCTCTATTTTCCTTAAAATGAAAGTTCATCCCATGAATAAGACAAGCATCGTTTCTCCTA
194 TCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCCTA
* *
30208 ACAATCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCGACAT
259 ACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCGACAT
*
30273 TGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCGTTTTTAATAGAATCAACGTTTGTCT
324 TGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCGTTTTTGATAGAATCAACGTTTGTCT
* * *
30338 CTTAAATATGCCAAACATTAATACTCAAACTAATCCTTATTCTTTTTAGATTTAGGCACCATAAA
389 CTTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAAA
* *
30403 AATAGTTTTCTCATTAGGATACA
454 CATAGTCTTCTCATTAGGATACA
* *
30426 CGATATTGATGCTTTGGTTTCGCAACAAAAGCTTTTTTCCCACCAATCGTTCTAAAGTCTAAGTT
1 CGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTCCCACCAATCGTTGTAAAGTCTAAGTT
* * * *
30491 TGTGCCTCAAATGAGACAAATATGGATTCTAGTAATAATCTTCAATCTTTTTCCGATAAAAGCAC
66 CGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATTCTTTTTCTGAT-AAAGCAC
* * *
30556 TACAAACACATTCTACTCTTTAGGATAAAAAACATTGAAGTTTTTCTTTTGCCTGGAAATCTTTT
130 TACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTTCTTTTGCCTGGAAATCTTTT
* * *
30621 CTTCGCCCTATTTTCCTTAAACTGAAAGTTCACCCCTTGAATAAGATAAGCATCGATTCTCCTAA
195 CTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCCTAA
* *
30686 CAGTCTCCTTTCTTTTCAACATTGGGAAGCCAAAACACATTGCCTTTGTTAGGAGACCCGACATT
260 CAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCGACATT
* * * *
30751 GATGCTTTGGAGTCTCAAGAAAAGCTTTTCTTCGTGTTGTTTTTGATAGAATCAACGTTTGTTTC
325 GATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCGTTTTTGATAGAATCAACGTTTGTCTC
*
30816 ATAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAAAC
390 TTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAAAC
*
30881 ATAGTCTTCTCATTAGGATAGA
455 ATAGTCTTCTCATTAGGATACA
* * *
30903 CGATATTGATGCTTTGGGTTT-GCAACAATGGCTTTTTTCCCACCAATGGTTGTAAAGACTAAGT
1 CGATATTGATGCTTT-GGTTTCGCAACAAAGGCTTTTTTCCCACCAATCGTTGTAAAGTCTAAGT
* **
30967 TCGTGCCTCAAAT-ACGA-TAGCATGGATTCTAGTAATGATCTTCATTCTTTTTCCT-ATAAAGC
65 TCGTGCCTCAAATGA-GACAAATATGGATTCTAGTAATGATCTTCATTCTTTTT-CTGATAAAGC
* * *
31029 CCTACATACACATTCTCCTCTTTAGGACAAAAGACTTTGAAGTTTTTCTTTTGCCTGGAAATCTT
128 ACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTTCTTTTGCCTGGAAATCTT
* *
31094 TTCTTCGCTCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAACATCGATTCTCCT
193 TTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCCT
* * *
31159 AACAGTCTCCTTTCTTTTCAACATTGGGATGCCAAAACACATTGCCTTTGTTAGGAGACCCGACA
258 AACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCGACA
* *
31224 TTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGTGTCGTTTTTGATAGAATCAACGTTTGTT
323 TTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCGTTTTTGATAGAATCAACGTTTGTC
31289 TCTTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAA
388 TCTTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAA
*
31354 ACATAGTCTTCTCATTAGGATAGA
453 ACATAGTCTTCTCATTAGGATACA
* * *
31378 CGATATTGATGCTTTGGGTTT-GCAACAATGGCTTTTTTCCCACCAATGGTTGTAAAGGCTAAGT
1 CGATATTGATGCTTT-GGTTTCGCAACAAAGGCTTTTTTCCCACCAATCGTTGTAAAGTCTAAGT
* * *
31442 TCGTGCCTCAAATAAGA-TAGTATGGATTCTAGTAATGATCTTCATTCTTTTTCCT-ATAAAGCA
65 TCGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATTCTTTTT-CTGATAAAGCA
* *
31505 CTACATACACATTCTCCTCTTTAGGACAAAAGACTTTGAAGTTTTTCTTTTGCCTGGAAATCTTT
129 CTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTTCTTTTGCCTGGAAATCTTT
* *
31570 TCTTCGCTCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGTTTCTCCTA
194 TCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCCTA
* *
31635 ACAATCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCGACAT
259 ACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCGACAT
*
31700 TGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCGTTTTTAATAGAATCAACGTTTGTCT
324 TGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCGTTTTTGATAGAATCAACGTTTGTCT
* *
31765 CTTAAATATGCCGAACATTAATACTCAAACTAATCCTTATTCTTTTTAGATTTAGGCACCATAAA
389 CTTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAAA
*
31830 CATAGTTTTCTCATTAGGATACA
454 CATAGTCTTCTCATTAGGATACA
* * * *
31853 CGAGATTGATGCTTTGGTTTCGCAACAAAAGCTTTTTTCCCACCAATCATTCTAAAGTCTAAGTT
1 CGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTCCCACCAATCGTTGTAAAGTCTAAGTT
* *
31918 CGTGCCTCAAATGAGACAAATATGGATTCTAGTAATAATCTTCATTCTTTTACTGATAAAGCACT
66 CGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATTCTTTTTCTGATAAAGCACT
* *
31983 ACAAACACATTCTCCTTTTTAGGACAAAAGACATTAAAGTTTTTCTTTTGCCTGGAAATCTTTTC
131 ACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTTCTTTTGCCTGGAAATCTTTTC
*
32048 TTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAACATCGATTCTCCTAAC
196 TTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCCTAAC
* * *
32113 AGTCTCCTTTCTTTTCAACATTGGGATGCCAAAACACATTGCCTTTGTTAGGATACCCGATATTG
261 AGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCGACATTG
* * *
32178 ATGCTTTGGTGTCTTAAGAAAAGCTTTTCTTCGCGTCATTTTTGATAGAATCAACGTTTGTTTCT
326 ATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCGTTTTTGATAGAATCAACGTTTGTCTCT
* * * *
32243 TAAATAAGCTGAATATTAATACTCAAACTAATCCTCATTCTTTTTAAATTTAGGCACCATAAACC
391 TAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAAACA
***
32308 TAGTCTTCTCATTAGGATTGG
456 TAGTCTTCTCATTAGGATACA
* * *
32329 CGATATTGATGCTTTGGTTTTGCAACAAAGCCTTTTTTCCCACCAATCGTTGTAAAGACTAAGTT
1 CGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTCCCACCAATCGTTGTAAAGTCTAAGTT
* *
32394 CGTGCCTCAAATGAGAC-AATATGGATTCTAGTAATGATCTTCATTCTTATTCTAATAAAGCACT
66 CGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATTCTTTTTCTGATAAAGCACT
* * *
32458 ATAAACACATTCTCCTCTTTGGGACAAAAGACTTTGAAGTTTTTCTTTTGCCTGGAAATCTTTT
131 ACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTTCTTTTGCCTGGAAATCTTTT
32522 GAATTTATGG
Statistics
Matches: 7615, Mismatches: 618, Indels: 83
0.92 0.07 0.01
Matches are distributed among these distances:
473 166 0.02
474 1146 0.15
475 2776 0.36
476 2890 0.38
477 627 0.08
478 10 0.00
ACGTcount: A:0.29, C:0.20, G:0.14, T:0.36
Consensus pattern (476 bp):
CGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTCCCACCAATCGTTGTAAAGTCTAAGTT
CGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATTCTTTTTCTGATAAAGCACT
ACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTTCTTTTGCCTGGAAATCTTTTC
TTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCCTAAC
AGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCGACATTG
ATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCGTTTTTGATAGAATCAACGTTTGTCTCT
TAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAAACA
TAGTCTTCTCATTAGGATACA
Found at i:32960 original size:12 final size:12
Alignment explanation
Indices: 32943--32980 Score: 67
Period size: 12 Copynumber: 3.2 Consensus size: 12
32933 AAAATGTGGG
*
32943 TTTATAGGCACT
1 TTTATAGGCGCT
32955 TTTATAGGCGCT
1 TTTATAGGCGCT
32967 TTTATAGGCGCT
1 TTTATAGGCGCT
32979 TT
1 TT
32981 GTCAAGAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.18, C:0.16, G:0.21, T:0.45
Consensus pattern (12 bp):
TTTATAGGCGCT
Found at i:36610 original size:159 final size:158
Alignment explanation
Indices: 35817--40788 Score: 587
Period size: 158 Copynumber: 31.4 Consensus size: 158
35807 TGACAGCTTG
* ** * * * * *
35817 TTTCAAGATTAGGATGCCAAAATGCATTCCCTTCTTTACGAT-CATGACATTAATGCTTTGGTGT
1 TTTCAAGATTAGGAAGCCAAAACACATTTCCTTCATTAGGATACATGACATTGATGCTTTGGTTT
* *
35881 CTCAAGAAAAGCTTTTCTTCCCG-ACATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGGCA
66 CTCAAGAAAAGCTTTTCTTCTCGCA-ATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAC-
* * *
35945 AACATAAATGCTCATGCTAATCCCCATTCT
129 AACATGAATACTCATCCTAATCCCCATTCT
* * * * * * **
35975 TTTTAGGGTTAGGCA-TCATAAACGA-AGTCTT-C-TCATTAGGATACATGATATTGATATTTTG
1 TTTCAAGATTAGGAAGCCA-AAAC-ACA-T-TTCCTTCATTAGGATACATGACATTGATGCTTTG
* * * * * *
36036 GTTTCGCAAGAAAGGCATTT-TT-TCGACCATTATTTG-TA-AAGTCTAAGTTTGTGC-CTCAAA
62 GTTTCTCAAGAAAAGCTTTTCTTCTCG-CAATT-TTTGATAGAA-TCAAAGTTTGT-CTCTTAAA
** * * ** * ***
36096 TGCGACAAACATGGATTCT-ACTAATGATCTTTATTCAT
123 TAAGAC-AACATGAATACTCA-TCCTAATCCCCATTC-T
** * * * * * *
36134 TTT-GTGATTAGGCA-CTATATACACATTCTCC-TCATTAGGATACACGATATTGATGCTTCGGT
1 TTTCAAGATTAGGAAGCCA-AAACACATT-TCCTTCATTAGGATACATGACATTGATGCTTTGGT
* * * * * * * * *
36196 TTCAC-AGCAAAGGC-TTTCTTCCCACCAATTGTTG-TA-AAGTCTAAGTTCGTGC-CTCAAATG
64 TTCTCAAG-AAAAGCTTTTCTTCTC-GCAATTTTTGATAGAA-TCAAAGTTTGT-CTCTTAAATA
* * ** * **
36256 AGGCAAACAT-AGATTCT-AGTAATGATCTACATTCT
125 AGAC-AACATGA-ATACTCA-TCCTAATCCCCATTCT
*** * * * * *
36291 TTTTGTGA-TAAGACA-CTATAAACACATTCTCC-TCATTAGGATAAATGAGATTGATGGTTT--
1 TTTCAAGATTAGGA-AGCCA-AAACACATT-TCCTTCATTAGGATACATGACATTGATGCTTTGG
* * * * * ** ** *
36351 TTTTTGCAAGGAAATCTTTTCTT-TGCCCTATTTTTTTTA-AATCAAAGTTCATCCCTTAAATAA
63 TTTCT-CAAGAAAAGCTTTTCTTCT-CGCAATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAA
* * * * * *
36414 GAAAAGCATCG-ATTCTCATAAC-AGTCTCCATTTT
126 GACAA-CAT-GAATACTCAT-CCTAATCCCCATTCT
* *
36448 TTTCAAGATTGGGAAGCCAAAACACATTTCCTTCATTAGGATACATGACATTGATGCTTTGGTGT
1 TTTCAAGATTAGGAAGCCAAAACACATTTCCTTCATTAGGATACATGACATTGATGCTTTGGTTT
*
36513 CTCAAGAAAAGCTTTTCTTCTCGCAGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAG
66 CTCAAGAAAAGCTTTTCTTCTCGCAATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACA-
36578 ACATGAATACTCATCCTAATCCCCATTCT
130 ACATGAATACTCATCCTAATCCCCATTCT
** * * *
36607 TTTCATTATTAGG--CCCTATAA-ACATTGT-CTTCATTAGGATACATGATATTGATGCTTTGGT
1 TTTCAAGATTAGGAAGCC-AAAACACATT-TCCTTCATTAGGATACATGACATTGATGCTTTGGT
* * * * * **
36668 TT-TGCAAAAAAAGGC-TTTCTTCCCACCAATTGTTG-TA-AAGTCTAAGTCCGTGCGTC--AAA
64 TTCT-CAAGAAAA-GCTTTTCTTCTC-GCAATTTTTGATAGAA-TCAAAGTTTGT-C-TCTTAAA
* * * ** * **
36727 TAAGACAAGCAAGGATTCT-AGTAATGATCTTCATTCT
123 TAAGACAA-CATGAATACTCA-TCCTAATCCCCATTCT
*** * * * * * * **
36764 TTTTGTGGTAAGGCA-CTATAAACACATTCTCCTT-ATTAGGGTAAATGACATTGATTG-TTTTT
1 TTTCAAGATTAGGAAGCCA-AAACACATT-TCCTTCATTAGGATACATGACATTGA-TGCTTTGG
* ** * * * * *** * ** * *
36826 TTTTTGGCTTGGAAATCTTTTCTT-TGGCCAATTATCCTTAAAATCAAAGTTCATCCCTTGAATA
63 TTTCT--CAAGAAAAGCTTTTCTTCTCG-CAATTTTTGATAGAATCAAAGTTTGTCTCTTAAATA
* * *
36890 AGATAAGCATCG---A-TCATCGTTACAGCCACCATTCT
125 AGACAA-CAT-GAATACTCATC-CTA-ATCC-CCATTCT
* * * *
36925 TTTCAAGATTGGGAAGCCAAAACACATTGCCTTCATTAGGATACATGACATTAATGCTTTGGTGT
1 TTTCAAGATTAGGAAGCCAAAACACATTTCCTTCATTAGGATACATGACATTGATGCTTTGGTTT
* * * **
36990 CTCAAGAAAAGCTTTTCTTCTCGCAGTTTTTGATAGAATCAAATTTTGTCTCTTACATAAGGGAG
66 CTCAAGAAAAGCTTTTCTTCTCGCAATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACA-
37055 ACATGAATACTCATCCTAATCCCCATTCT
130 ACATGAATACTCATCCTAATCCCCATTCT
** * * * ** *
37084 TTTCATTATTAGG--CCCTATAA-ACATAGT-CTTCATTAGGATACGCGATATTGATGCTTTGGT
1 TTTCAAGATTAGGAAGCC-AAAACACAT-TTCCTTCATTAGGATACATGACATTGATGCTTTGGT
* * * * * *
37145 TT-TGCAA-AAAAGGC-TTTCTTCCCACCAACTGTTG-TA-AAGTCTAAGTCCATG-CGTC--AA
64 TTCT-CAAGAAAA-GCTTTTCTTCTC-GCAATTTTTGATAGAA-TCAAAGT--TTGTC-TCTTAA
* * * * ** * **
37202 CTAAGACAGACAAGGATTCT-AGTAATGATCTTCATTCT
122 ATAAGACA-ACATGAATACTCA-TCCTAATCCCCATTCT
** * * * * * **
37240 TTT-GTGATAAGGCA-CTATAAACACATTCTCCTT-ATTAGGATAAATGACATTGATGGTTTTTT
1 TTTCAAGATTAGGAAGCCA-AAACACATT-TCCTTCATTAGGATACATGACATTGATGCTTTGGT
* * * * * * *** * * ** * *
37302 TTTTGCATGGAAATCTTTTCTT-TGGCTAATTATCCTTAAAATAAAAGTTCATCCCTTGAATAAG
64 TTCT-CAAGAAAAGCTTTTCTTCTCGC-AATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAG
* * ** * *
37366 ATAAGCATCG-ATCATTGTTAC-AATCACCATTCT
127 ACAA-CAT-GAAT-ACTCATCCTAATCCCCATTCT
* * * * * *
37399 TTTCAAGATTGGGAAGGCAAAACAC-TTTGCCTTCGTTAAGATACATGACATTGATGCTTTGATA
1 TTTCAAGATTAGGAAGCCAAAACACATTT-CCTTCATTAGGATACATGACATTGATGCTTTGGTT
* ** * * * *
37463 TCGCAAGAAAAAATTTTCGTCCCGCCATTTTTGATAGAATCAAAGTTTGTGTCTTAAATAAGACA
65 TCTCAAGAAAAGCTTTTCTTCTCGCAATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAC-
37528 AACATGAATACTCA-CACTAATCCCCATTCT
129 AACATGAATACTCATC-CTAATCCCCATTCT
* * * * * * * *
37558 TTTTAGGATTAGGCA-CTATAGACATAGTCTT-C-TCATTAGGATACACGATATTGATGCTTTGG
1 TTTCAAGATTAGGAAGCCA-AAACACA-T-TTCCTTCATTAGGATACATGACATTGATGCTTTGG
* * * * * * * * * * *
37620 TTTCGCAACAAAGGC-TTTCTTCCCACCAATTGTTGCA-A-AGTCTAAGTTCGTGC-CTCAAATG
63 TTTCTCAAGAAAAGCTTTTCTTCTC-GCAATTTTTG-ATAGAATCAAAGTTTGT-CTCTTAAATA
* * ** * **
37681 AGACAAACATGGATCCT-AGTAATGATCTTCATTCT
125 AGAC-AACATGAATACTCA-TCCTAATCCCCATTCT
*** * * * *
37716 TTTTGTGA-TA--CAGCACTATAAACACATTCTCC-TCATTCGGATAAATGACATTGATGATTT-
1 TTTCAAGATTAGGAAGC-C-A-AAACACATT-TCCTTCATTAGGATACATGACATTGATGCTTTG
* * * * *** * ** * *
37776 -TTTTTGCACA-AAAATCTTTTCTT-TGCCCAATTATCCTTAAAATCAAAGTTCATCCCTTGAAT
62 GTTTCT-CA-AGAAAAGCTTTTCTTCT-CGCAATTTTTGATAGAATCAAAGTTTGTCTCTTAAAT
* * * ** * *
37838 AGGACAAGCATCG-ATTCTCGTAATAGTCTCCATTCT
124 AAGACAA-CAT-GAATACTCATCCTAATCCCCATTCT
* * * * * *
37874 TTTTAAGATTGGGAAGCCAAAACACATTGCCTTCGTTAGGATACTTGACATTGATGCTTTGGTGT
1 TTTCAAGATTAGGAAGCCAAAACACATTTCCTTCATTAGGATACATGACATTGATGCTTTGGTTT
* * * ** * *
37939 CTTAAGAAAAGCTTTTCTTATCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAGGATAA
66 CTCAAGAAAAGCTTTTCTTCTCGCAATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGA-CA
* *
38004 ACATGAATACTCA-CACTAATCCCAATTAT
130 ACATGAATACTCATC-CTAATCCCCATTCT
* * * * * *
38033 TTT-AGGATTAGGCA-CCATAAACAAAGTCTT-C-TCATTAGGATACAAGATATTGATCCTTTGG
1 TTTCAAGATTAGGAAGCCA-AAACACA-T-TTCCTTCATTAGGATACATGACATTGATGCTTTGG
** * *
38094 TTTCGT-AACG-AGGGC-TTTCTTCTTTC-CAATTTTTG-TA-AAGTCTAAGTTTGTGC-CTCAA
63 TTTC-TCAA-GAAAAGCTTTTCTTC--TCGCAATTTTTGATAGAA-TCAAAGTTTGT-CTCTTAA
* * * * ** ** ** *
38152 ATGAGGCAAACATGGATTCTTGT-AAAGATCTTCATTAT
122 ATAAGAC-AACATGAATACTCATCCTA-ATCCCCATTCT
*** * * * * * * *
38190 TTTTTGGATAAGGCA-CTATAAACACATTCTCC-GCATTAGGATAAATGACATTGATGATTTTGT
1 TTTCAAGATTAGGAAGCCA-AAACACATT-TCCTTCATTAGGATACATGACATTGATGCTTTGGT
* * * *** * ** *
38253 TT-TGCATCG-AAATCTTTTCTT-TGCGCAATTATCCTTAAAATCAAAGTTCATCCCTTAAATAA
64 TTCT-CA-AGAAAAGCTTTTCTTCT-CGCAATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAA
* * * *
38315 GACAAGCATCG-ATTCTCGTCAC-AGTCTCCATT-T
126 GACAA-CAT-GAATACTCATC-CTAATCCCCATTCT
* * * * * *
38348 GTTTCAAGATTAGGATGCCAAAACGCATTCCCTTCTTTAGGATACATGACATTAATGCTTTGGTG
1 -TTTCAAGATTAGGAAGCCAAAACACATTTCCTTCATTAGGATACATGACATTGATGCTTTGGTT
* ** *
38413 TCTCAAGAAAAGCTTTTCTTCTTGCCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGGCA
65 TCTCAAGAAAAGCTTTTCTTCTCGCAATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAC-
* * *
38478 AACATAAATGCTCATGCTAATCCCCATTCT
129 AACATGAATACTCATCCTAATCCCCATTCT
* * * * * * **
38508 TTTTAGGATTAGGCA-TCATAAACGA-AGTCTT-C-TCATTAGGATACATGATATAGATATTTTG
1 TTTCAAGATTAGGAAGCCA-AAAC-ACA-T-TTCCTTCATTAGGATACATGACATTGATGCTTTG
* * * ** * *
38569 GTTTCACAAGAAAGGCATTT-TT-TCGACTAATAATTG-TA-AAGTCTAAGTTTGTGC-CTCAAA
62 GTTTCTCAAGAAAAGCTTTTCTTCTCG-C-AATTTTTGATAGAA-TCAAAGTTTGT-CTCTTAAA
* * * ** * **
38629 TACGACAAACATGGATTCT-ACTAATGATCTTCATTCAT
123 TAAGAC-AACATGAATACTCA-TCCTAATCCCCATTC-T
** * * * * *
38667 TTT-GTGATTAGGCA-CTATAAACACA-TTCTCTTCATTAGGATACACGATATTGATGCTTCGG-
1 TTTCAAGATTAGGAAGCCA-AAACACATTTC-CTTCATTAGGATACATGACATTGATGCTTTGGT
* * * * * * *
38728 TT-TCATAGCAAAGGC-TTTCTTCCCAACAATTGTTG-TA-AAGTCTAAGTTCGTGC-CTCAAAT
64 TTCTCA-AG-AAAAGCTTTTCTTCTC-GCAATTTTTGATAGAA-TCAAAGTTTGT-CTCTTAAAT
* * * ** * ***
38788 GAGACAAACATGGATTCT-AGTAATGATTTACATTCT
124 AAGAC-AACATGAATACTCA-TCCTAATCCCCATTCT
*** * * * * * *
38824 TTTTGTGATAAGGCA-CTATAAACACATTCTCC-TCATTAGGATAAATGAGATTGATGGTTT--T
1 TTTCAAGATTAGGAAGCCA-AAACACATT-TCCTTCATTAGGATACATGACATTGATGCTTTGGT
* * * ** * * * * ** * * *
38885 TTTTGCATGGAAATATTTTCTT-TGCCCTATTTTT-TTAAAAATCAAAGTTCATCCCTTGAATAG
64 TTCT-CAAGAAAAGCTTTTCTTCT-CGCAATTTTTGAT-AGAATCAAAGTTTGTCTCTTAAATAA
* * ** * *
38948 GACAAGCATCG-ATTCTCGTAATAGTCTCCATTCT
126 GACAA-CAT-GAATACTCATCCTAATCCCCATTCT
* * * * * * *
38982 TTTTAAGATTGGGAAGCCAAAACACATTGCCTTCGTTAGGATACTTGACATTGATGCTTT-ATGT
1 TTTCAAGATTAGGAAGCCAAAACACATTTCCTTCATTAGGATACATGACATTGATGCTTTGGTTT
* * ** * *
39046 CTCAAGAAAAGCTTTTCTTCCCACCGTTTTTGAGAGAATCAAAGTTTGTCTCTTAAATAAGGCAA
66 CTCAAGAAAAGCTTTTCTTCTCGCAATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAC-A
** * *
39111 ACATGGTTGCTCATGCTAATTCCCC-TTCT
130 ACATGAATACTCATCCTAA-TCCCCATTCT
** * * * * * * * **
39140 TTTCTGGACTAGGCA-TCATAAATGA-AGTTTTCTT-ATTCGGATACATGATATTGATATTTTGG
1 TTTCAAGATTAGGAAGCCA-AAA-CACA-TTTCCTTCATTAGGATACATGACATTGATGCTTTGG
* * * * ** * *
39202 TTTCACAAGAAAGGCATTTT-TT-TCAACAATATTTG-TA-AAGTTTAGGTTTGTGC-CTCAAAT
63 TTTCTCAAGAAAAGC-TTTTCTTCTC-GCAATTTTTGATAGAA-TCAAAGTTTGT-CTCTTAAAT
* * * ** * **
39262 GCA-ACAAACATGGATTCT-ACTAATGATCTTCATTCAT
124 -AAGAC-AACATGAATACTCA-TCCTAATCCCCATTC-T
** * * * * ** * *
39299 TTT-GTGATTAGGCA-CTATAAACACATTCTCC-TCATTAGGACACACGTTATTGACGC-TTCG-
1 TTTCAAGATTAGGAAGCCA-AAACACATT-TCCTTCATTAGGATACATGACATTGATGCTTTGGT
** ** * * * * * *
39359 TT-TCATAGCCAAGGATTTCTTCCCACCAATTGTTG-TA-AAGTCTAAGTTTGTGC-CTCAAATG
64 TTCTCA-AGAAAAGCTTTTCTTCTC-GCAATTTTTGATAGAA-TCAAAGTTTGT-CTCTTAAATA
* * * ** **
39420 AGACAAACAGGGATTCT-AGT-AAAGATCTTCATTCT
125 AGAC-AACATGAATACTCA-TCCTA-ATCCCCATTCT
*** * * * * * **
39455 TTTTGTGATAAGGCA-CTATAAACACATTCTCC-TCATTAGGATAAATGACATTGATGATTTTCT
1 TTTCAAGATTAGGAAGCCA-AAACACATT-TCCTTCATTAGGATACATGACATTGATGCTTTGGT
* * * * * * * * ** * *
39518 TT-TGCATGGAAATCTTTTCTT-TGCCCAA-TTATCATTAAAATGAAAGTTCATCCCTTGAATAA
64 TTCT-CAAGAAAAGCTTTTCTTCT-CGCAATTTTTGA-TAGAATCAAAGTTTGTCTCTTAAATAA
* * * ** *
39580 GGCAAGCGTTG-ATTCTCATAGTAGT-CCCATTCT
126 GACAA-C-ATGAATACTCATCCTAATCCCCATTCT
* * * * ** * **
39613 TTTTAAGATTGGGAAGCTAAAACACATTGCCTTTGTTAGGATACACGACATTGATGCTTTGGGGT
1 TTTCAAGATTAGGAAGCCAAAACACATTTCCTTCATTAGGATACATGACATTGATGCTTTGGTTT
* *** *
39678 CTCAAGAAAAGCTTTTCTGCTCGTGGTTTTTTATAGAATCAAAGTTTGTCTCTTAAATAAGACAA
66 CTCAAGAAAAGCTTTTCTTCTCGCAATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAC-A
39743 ACATGAATACTCATCCTAATCCCCATTCT
130 ACATGAATACTCATCCTAATCCCCATTCT
** * * * * *
39772 TTTCATTATTAGG--CCCTATAA-ACATAGT-CTTCATTAGGATACACGATATTGATGCTTTGGT
1 TTTCAAGATTAGGAAGCC-AAAACACAT-TTCCTTCATTAGGATACATGACATTGATGCTTTGGT
* ** * * * * * *
39833 TT-TGCAA-CAAAGGGTTTCTTCCCACCAATTGTTG-TA-AAGTCTAAGTTTGTGC-CTCAAATG
64 TTCT-CAAGAAAAGCTTTTCTTCTC-GCAATTTTTGATAGAA-TCAAAGTTTGT-CTCTTAAATA
* * * ** **
39893 AGACAAACAGGGATTCT-AGT-AAAGATCTTCATTCT
125 AGAC-AACATGAATACTCA-TCCTA-ATCCCCATTCT
*** * * * * * **
39928 TTTTGTGATAAGGCA-CTATAAACACATTCTCC-TCATTAGGATAAATGACATTGATGATTTTCT
1 TTTCAAGATTAGGAAGCCA-AAACACATT-TCCTTCATTAGGATACATGACATTGATGCTTTGGT
** * * * * *** * * ** * *
39991 TT-TCCTTGGAAATCTTTTCTT-TGCCCAATTATCCTTAAAATCAATGTTCATCACTTGAATAAG
64 TTCT-CAAGAAAAGCTTTTCTTCT-CGCAATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAG
* ** * *
40054 A-AATGCATCG-ATTCTCATAATAGTCTCCATTCT
127 ACAA--CAT-GAATACTCATCCTAATCCCCATTCT
* * * * ** * * *
40087 TTTTAAGATTGGGAAGCCAGAACACATTGCCTTTGTTAGGATACACGACATTGATTCTTTGGTGT
1 TTTCAAGATTAGGAAGCCAAAACACATTTCCTTCATTAGGATACATGACATTGATGCTTTGGTTT
* * *
40152 CTCAAGAAAAGCTTTTCTTCTAGCCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGGCAA
66 CTCAAGAAAAGCTTTTCTTCTCGCAATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAC-A
*
40217 ACATAAATACTCATCCTAATCCCCATTCT
130 ACATGAATACTCATCCTAATCCCCATTCT
** ** * * * **
40246 TTTCATTATTAGCCA-CTATGAACAAAGTCTT-C-TCATTAGGATACATGATGTTGATGCTTTGG
1 TTTCAAGATTAGGAAGCCA-AAACACA-T-TTCCTTCATTAGGATACATGACATTGATGCTTTGG
** * * * * * * *
40308 TTTCGGAACAAAGGC-TTTCTTCCCACCAATTGTTG-TA-AAGTCGAAGTCCATG-CGTC--AAA
63 TTTCTCAAGAAAAGCTTTTCTTCTC-GCAATTTTTGATAGAA-TCAAAGT--TTGTC-TCTTAAA
* * * ** * **
40367 TGAGACAAACATTG-AT-TTTAGTGATGATCTTCATTC-
123 TAAGAC-AACA-TGAATACTCA-TCCTAATCCCCATTCT
** * * * * * * **
40403 TTTCTGTGATGAGGCA-CTAGAAACACA-TTCTCTTCATTAGGATAAATGACAGTGATGGTTTTT
1 TTTC-AAGATTAGGAAGCCA-AAACACATTTC-CTTCATTAGGATACATGACATTGATGCTTTGG
* * * * * * *** * ** *
40466 TTTTTGCATGGAAATCTTTTCTT-TGCCCAATTATCCTTAAAATCAAAGTTCATC-CATTGAATA
63 TTTCT-CAAGAAAAGCTTTTCTTCT-CGCAATTTTTGATAGAATCAAAGTTTGTCTC-TTAAATA
* * * * ** * *
40529 GGACAAGCATCG-ATTCCCGTAATAGTCTCCATTCT
125 AGACAA-CAT-GAATACTCATCCTAATCCCCATTCT
* * * * * *
40564 TTTTAAGATTGGGAAGCCAAAACACATTGCCTTCGTTAGGATACTTGACATTGATGCTTTGGTGT
1 TTTCAAGATTAGGAAGCCAAAACACATTTCCTTCATTAGGATACATGACATTGATGCTTTGGTTT
* * * ** * *
40629 CTTAAGAAAAGCTTTTCTTATCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAGGATAA
66 CTCAAGAAAAGCTTTTCTTCTCGCAATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGA-CA
40694 ACATGAATACTCA-CACTAATCCCCATTCT
130 ACATGAATACTCATC-CTAATCCCCATTCT
* * * * * * * *
40723 TTTTAGGATTAGGCA-CCATAAACATAGTCTT-C-TCATTAGGATATAGGATATTGATACTTTGG
1 TTTCAAGATTAGGAAGCCA-AAACACA-T-TTCCTTCATTAGGATACATGACATTGATGCTTTGG
40785 TTTC
63 TTTC
40789 ACAACGAAGG
Statistics
Matches: 3451, Mismatches: 1020, Indels: 685
0.67 0.20 0.13
Matches are distributed among these distances:
155 25 0.01
156 158 0.05
157 581 0.17
158 1284 0.37
159 1078 0.31
160 212 0.06
161 101 0.03
162 12 0.00
ACGTcount: A:0.30, C:0.19, G:0.16, T:0.36
Consensus pattern (158 bp):
TTTCAAGATTAGGAAGCCAAAACACATTTCCTTCATTAGGATACATGACATTGATGCTTTGGTTT
CTCAAGAAAAGCTTTTCTTCTCGCAATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAA
CATGAATACTCATCCTAATCCCCATTCT
Found at i:36789 original size:316 final size:315
Alignment explanation
Indices: 35841--39983 Score: 1174
Period size: 316 Copynumber: 13.1 Consensus size: 315
35831 TGCCAAAATG
* * *
35841 CATTC-CCTTCTTTACGAT-CATGACATTAATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCCCG
1 CATTCTCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCCCG
* *
35904 ACATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGGCAAACATAAATGCTCATGCTAATCCC
66 -CATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGGCAAACAT-AATACTCATACTAATCCC
* * * * **
35969 CATTCTTTTTAGGGTTAGG-CATCATAAACGA-AGTCTTCTCATTAGGATACATGATATTGATAT
129 CATTCTTTTTATGATTAGGCCCT-ATAAAC-ATTGTC-T-TCATTAGGATACATGATATTGATGC
* * * *
36032 TTTGGTTTCGC-AAGAAAGGCATTT-TTTCGACC-ATTATTTGTAAAGTCTAAGTTTGTGCCTCA
190 TTTGGTTTTGCAAAGAAAGGCATTTCTTCCCACCAATT-TTTGTAAAGTCTAAGTTCGTGCCTCA
** * * * * * *
36094 AATGCGACAAACATGGATTCTACTAATGATCTTTATTCATTTTGTGATTAGGCACTATATACA
254 AATAAGACAAGCATGGATTCTA-TAATGATCTTCATTCTTTTTGTGGTAAGGCACTATAAACA
* * * *
36157 CATTCTCC-TCATTAGGATACACGATATTGATGCTTCGGT-T-TCACAGCAAAGGC-TTTCTTCC
1 CATTCTCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCTCA-AG-AAAAGCTTTTCTTCC
* * * * * * * *
36218 CACCAATTGTTG-TA-AAGTCTAAGTTCGTGC-CTCAAATGAGGCAAACATAGATTCT-AGTAAT
64 C-GC-ATTTTTGATAGAA-TCAAAGTTTGT-CTCTTAAATAAGGCAAACATA-ATACTCA-TACT
* ** * * * * * * * *
36279 GATCTACATTCTTTTTGTGATAAGACACTATAAACACATTCTCCTCATTAGGATAAATGAGATTG
123 AATCCCCATTCTTTTTATGATTAGGCCCTAT-AA-ACATTGTCTTCATTAGGATACATGATATTG
* * * * * * * * * * * *
36344 ATGGTTT-TTTTTGCAAGGAAA-TCTTTTCTTTGCC-CTATTTTTTTTAAA-TCAAAGTTCATCC
186 ATGCTTTGGTTTTGCAAAGAAAGGCATTTC-TTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGC
* * * * * *
36405 CTTAAATAAGAAAAGCATCGATTCTCATAA-CAGTCTCCATT-TTTTTCAAGATTGGGAA-GC-C
250 CTCAAATAAGACAAGCATGGATTCT-ATAATGA-TCTTCATTCTTTTT---G--TGGTAAGGCAC
36466 -A-AAACA
308 TATAAACA
*
36472 CATT-TCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCTCG
1 CATTCTCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCCCG
* * *
36536 CAGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAGACATGAATACTCATCCTAATCCC
66 CA-TTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGGCAAACAT-AATACTCATACTAATCCC
* *
36601 CATTCTTTTCATTATTAGGCCCTATAAACATTGTCTTCATTAGGATACATGATATTGATGCTTTG
129 CATTCTTTTTATGATTAGGCCCTATAAACATTGTCTTCATTAGGATACATGATATTGATGCTTTG
* * * *
36666 GTTTTGCAAAAAAAGGC-TTTCTTCCCACCAATTGTTGTAAAGTCTAAGTCCGTGCGTCAAATAA
194 GTTTTGCAAAGAAAGGCATTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATAA
*
36730 GACAAGCAAGGATTCTAGTAATGATCTTCATTCTTTTTGTGGTAAGGCACTATAAACA
259 GACAAGCATGGATTCTA-TAATGATCTTCATTCTTTTTGTGGTAAGGCACTATAAACA
* * ** * * ** * *
36788 CATTCTCCTT-ATTAGGGTAAATGACATTGATTG-TTTTTTTTTTGGCTTGGAAATCTTTTCTTT
1 CATTCTCCTTCATTAGGATACATGACATTGA-TGCTTTGGTGTCT--CAAGAAAAGCTTTTC-TT
* * * *** * ** * * ** * **
36851 GGCC-AATTATCCTTAAAATCAAAGTTCATCCCTTGAATAAGATAAGCAT-CGA-TCAT-CGTTA
62 -CCCGCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGGCAAACATAATACTCATAC--TA
* * * * * * * *
36912 CAGCCACCATTCTTTTCAAGATTGGGAAGCC-AAAACACATTGCCTTCATTAGGATACATGACAT
124 -ATCC-CCATTCTTTTTATGATTAGG--CCCTATAA-ACATTGTCTTCATTAGGATACATGATAT
* * * * * * * * * *
36976 TAATGCTTTGGTGTCT-C-AAGAAAAGCTTTTCTTCTC-GCAGTTTTTGATAGAA-TCAAATTTT
184 TGATGCTTTGGT-TTTGCAAAGAAAGGCATTTCTTCCCACCAATTTTTG-TA-AAGTCTAAGTTC
* * ** * * ** * ** ** ** * *
37037 GT-CTCTTACATAAG-GGAGACATGAATACTCATCCTAATCCCCATTCTTTTCATTATTAGGCCC
246 GTGC-CTCAAATAAGACAAG-CATGGATTCT-ATAATGATCTTCATTCTTTTTGTGGTAAGGCAC
37100 TAT-AA-A
308 TATAAACA
** ** * *
37106 CATAGT-CTTCATTAGGATACGCGATATTGATGCTTTGGT-TTTGCAA-AAAAGGC-TTTCTTCC
1 CATTCTCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCT-CAAGAAAA-GCTTTTCTTCC
* * * * * * * * *
37167 CACCAACTGTTG-TA-AAGTCTAAGTCCATG-CGTC--AACTAAGACAGACA-AGGATTCT-AGT
64 C-GC-ATTTTTGATAGAA-TCAAAGT--TTGTC-TCTTAAATAAGGCAAACATA--ATACTCA-T
* * ** * * * * * *
37225 AATGATCTTCATTC-TTTTGTGATAAGGCACTATAAACACATTCTCCTT-ATTAGGATAAATGAC
120 ACTAATCCCCATTCTTTTTATGATTAGGCCCTAT-AA-ACATTGT-CTTCATTAGGATACATGAT
* ** ** * * *** * * * **
37288 ATTGATGGTTTTTTTTTTGCATGGAAA-TCTTTTCTT-TGGCTAATTATCCT-TAAAATAAAAGT
182 ATTGAT-GCTTTGGTTTTGCAAAGAAAGGCATTTCTTCCCACCAATT-T-TTGTAAAGTCTAAGT
* * ** * * * * ** ** * *
37350 TCATCCCTTGAATAAGATAAGCATCGA-TCATTGTTACAATCACCATTCTTTTCAAGATTGGGAA
244 TCGTGCCTCAAATAAGACAAGCATGGATTC--TATAATGATCTTCATTCTTTT--TG--TGGTAA
37414 GG--C-A-AAACA
303 GGCACTATAAACA
* * * * * ** *
37423 C-TT-TGCCTTCGTTAAGATACATGACATTGATGCTTTGATATCGCAAGAAAAAATTTTCGTCCC
1 CATTCT-CCTTCATTAGGATACATGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCCC
* * *
37486 GCCATTTTTGATAGAATCAAAGTTTGTGTCTTAAATAAGACAAACATGAATACTCACACTAATCC
65 G-CATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGGCAAACAT-AATACTCATACTAATCC
* * * * *
37551 CCATTCTTTTTAGGATTAGGCACTATAGACATAGTCTTCTCATTAGGATACACGATATTGATGCT
128 CCATTCTTTTTATGATTAGGCCCTATAAACATTGTC-T-TCATTAGGATACATGATATTGATGCT
* * * *
37616 TTGGTTTCGC-AACAAAGGC-TTTCTTCCCACCAATTGTTGCAAAGTCTAAGTTCGTGCCTCAAA
191 TTGGTTTTGCAAAGAAAGGCATTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAA
* * * *
37679 TGAGACAAACATGGATCCTAGTAATGATCTTCATTCTTTTTGTGATACA-GCACTATAAACA
256 TAAGACAAGCATGGATTCTA-TAATGATCTTCATTCTTTTTGTGGTA-AGGCACTATAAACA
* * * * * *
37740 CATTCTCC-TCATTCGGATAAATGACATTGATGATTT--TTTTTGCACA-AAAATCTTTTCTTTG
1 CATTCTCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCT-CA-AGAAAAGCTTTTC-TT-
* * *** * ** * * * * * * * *
37801 CCC-AATTATCCTTAAAATCAAAGTTCATCCCTTGAAT-AGGACAAGCATCGATTCTCGTAATAG
62 CCCGCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGG-CAAACAT-AATACTCATACTAA
* * * * * * * * *
37864 TCTCCATTCTTTTTAAGATTGGGAAGCC-AAAACACATTGCCTTCGTTAGGATACTTGACATTGA
125 TCCCCATTCTTTTTATGATTAGG--CCCTATAA-ACATTGTCTTCATTAGGATACATGATATTGA
* * ** ** * *
37928 TGCTTTGGTGTCTT---AAGAAAAGCTTTTCTTATCA-CTGTTTTTGATAGAA-TCAAAGTTTGT
187 TGCTTTGGT-T-TTGCAAAGAAAGGCATTTCTTCCCACCAATTTTTG-TA-AAGTCTAAGTTCGT
* * * * * * * * * * * * * * *
37988 -CTCTTAAATAGGATAAACATGAATACTCACACTAATC-CCAATTATTTTAG-GATTAGGCACCA
248 GC-CTCAAATAAGACAAGCATGGATTCT-ATAATGATCTTC-ATTCTTTTTGTGGTAAGGCACTA
38050 TAAACA
310 TAAACA
* * * * * * * **
38056 AAGTCTTC-TCATTAGGATACAAGATATTGATCCTTTGGTTTCGT-AACG-AGGGCTTTCTTCTT
1 CATTCTCCTTCATTAGGATACATGACATTGATGCTTTGGTGTC-TCAA-GAAAAGC-TT-TTCTT
* * * * * * * ** *
38118 TCC-AATTTTTG-TA-AAGTCTAAGTTTGTGC-CTCAAATGAGGCAAACATGGATTCTTGTA-AA
62 CCCGCATTTTTGATAGAA-TCAAAGTTTGT-CTCTTAAATAAGGCAAACAT-AATACTCATACTA
** * * * * ** * *
38178 GATCTTCATTATTTTT-TGGATAAGGCACTATAAACACATTCTCCGCATTAGGATAAATGACATT
124 -ATCCCCATTCTTTTTAT-GATTAGGCCCTAT-AA-ACATTGTCTTCATTAGGATACATGATATT
* * ** * * ** * * * * *
38242 GATGATTTTGTTTTGCATCGAAA-TCTTTTCTTTGC-GCAATTATCCT-TAAAATCAAAGTTCAT
185 GATGCTTTGGTTTTGCAAAGAAAGGCATTTCTTCCCACCAATT-T-TTGTAAAGTCTAAGTTCGT
* * * * * *** * *
38304 CCCTTAAATAAGACAAGCATCGATTCTCGTCACA-G-TCTCCATT-TGTTTCAAGATTAGG-ATG
248 GCCTCAAATAAGACAAGCATGGATTCT-AT-A-ATGATCTTCATTCT-TTTTGTGGTAAGGCA--
* *
38365 CCA-AAACG
307 CTATAAACA
* * **
38373 CATTC-CCTTCTTTAGGATACATGACATTAATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCTTG
1 CATTCTCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCCCG
* * *
38437 CCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGGCAAACATAAATGCTCATGCTAATCCC
66 -CATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGGCAAACAT-AATACTCATACTAATCCC
* * * * **
38502 CATTCTTTTTAGGATTAGG-CATCATAAACGA-AGTCTTCTCATTAGGATACATGATATAGATAT
129 CATTCTTTTTATGATTAGGCCCT-ATAAAC-ATTGTC-T-TCATTAGGATACATGATATTGATGC
* * * ** *
38565 TTTGG-TTT-CACAAGAAAGGCATTT-TTTCGACTAATAATTGTAAAGTCTAAGTTTGTGCCTCA
190 TTTGGTTTTGCA-AAGAAAGGCATTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCA
* * * * *
38627 AATACGACAAACATGGATTCTACTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACA
254 AATAAGACAAGCATGGATTCTA-TAATGATCTTCATTCTTTTTGTGGTAAGGCACTATAAACA
* * * *
38690 CATTCT-CTTCATTAGGATACACGATATTGATGCTTCGGT-T-TCATAGCAAAGGC-TTTCTTCC
1 CATTCTCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCTCA-AG-AAAAGCTTTTCTTCC
* * * * * * * * * *
38751 CAACAATTGTTG-TA-AAGTCTAAGTTCGTGC-CTCAAATGAGACAAACATGGATTCT-AGTAAT
64 C-GC-ATTTTTGATAGAA-TCAAAGTTTGT-CTCTTAAATAAGGCAAACAT-AATACTCA-TACT
* *** * * * * * * *
38812 GATTTACATTCTTTTTGTGATAAGGCACTATAAACACATTCTCCTCATTAGGATAAATGAGATTG
123 AATCCCCATTCTTTTTATGATTAGGCCCTAT-AA-ACATTGTCTTCATTAGGATACATGATATTG
* * ** * ** * * * * * *
38877 ATGGTTT-TTTTTGCATGGAAA--TATTTTCTTTGC-CCTATTTTTTTAAAAATCAAAGTTCATC
186 ATGCTTTGGTTTTGCAAAGAAAGGCA-TTTCTTCCCACCAATTTTTGT-AAAGTCTAAGTTCGTG
** * * * * *
38938 CCTTGAATAGGACAAGCATCGATTCTCGTAAT-AGTCTCCATTCTTTTTAAGATTGGGAA-GC-C
249 CCTCAAATAAGACAAGCATGGATTCT-ATAATGA-TCTTCATTCTTTTT--G--TGGTAAGGCAC
39000 -A-AAACA
308 TATAAACA
* * * *
39006 CATT-GCCTTCGTTAGGATACTTGACATTGATGCTTT-ATGTCTCAAGAAAAGCTTTTCTTCCCA
1 CATTCTCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCCC-
* * * ** * *
39069 CCGTTTTTGAGAGAATCAAAGTTTGTCTCTTAAATAAGGCAAACATGGTTGCTCATGCTAATTCC
65 GCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGGCAAACAT-AATACTCATACTAA-TCC
* * * * * *
39134 CC-TTCTTTTCT-GGACTAGG-CATCATAAATGAAGTTTTCTT-ATTCGGATACATGATATTGAT
128 CCATTCTTTT-TATGATTAGGCCCT-ATAAA--CA-TTGTCTTCATTAGGATACATGATATTGAT
** ** * * * * *
39195 ATTTTGG-TTT-CACAAGAAAGGCATTT-TTTTCAACAATATTTGTAAAGTTTAGGTTTGTGCCT
188 GCTTTGGTTTTGCA-AAGAAAGGCATTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCT
* * * * *
39257 CAAATGCA-ACAAACATGGATTCTACTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAAC
252 CAAAT-AAGACAAGCATGGATTCTA-TAATGATCTTCATTCTTTTTGTGGTAAGGCACTATAAAC
39321 A
315 A
* * ** * * ** **
39322 CATTCTCC-TCATTAGGACACACGTTATTGACGC-TTCGT-T-TCATAGCCAAGGATTTCTTCCC
1 CATTCTCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCTCA-AGAAAAGCTTTTCTTCCC
* * * * * * ** * *
39383 ACCAATTGTTG-TA-AAGTCTAAGTTTGTGC-CTCAAATGAGACAAACAGGGATTCT-AGTA-AA
65 -GC-ATTTTTGATAGAA-TCAAAGTTTGT-CTCTTAAATAAGGCAAACA-TAATACTCA-TACTA
** * * * * * * *
39443 GATCTTCATTCTTTTTGTGATAAGGCACTATAAACACATTCTCCTCATTAGGATAAATGACATTG
124 -ATCCCCATTCTTTTTATGATTAGGCCCTAT-AA-ACATTGTCTTCATTAGGATACATGATATTG
* ** ** * * ** * * ** * *
39508 ATGATTTTCTTTTGCATGGAAA-TCTTTTCTTTGC-CCAATTATCAT-TAAAATGAAAGTTCATC
186 ATGCTTTGGTTTTGCAAAGAAAGGCATTTCTTCCCACCAATT-T-TTGTAAAGTCTAAGTTCGTG
** * * * * * ** * ** *
39570 CCTTGAATAAGGCAAGCGTTGATTCTCATAGT-AGTC-CCATTCTTTTTAAGATTGGGAAGCTA-
249 CCTCAAATAAGACAAGCATGGATTCT-ATAATGA-TCTTCATTCTTTTTGTGGTAAGGCA-CTAT
39632 AAACA
311 AAACA
* ** * * * *
39637 CATT-GCCTTTGTTAGGATACACGACATTGATGCTTTGGGGTCTCAAGAAAAGCTTTTCTGCTCG
1 CATTCTCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCCCG
** * * *
39701 TGGTTTTTTATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATCCTAATCCC
66 -CATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGGCAAACAT-AATACTCATACTAATCCC
* * * *
39766 CATTCTTTTCATTATTAGGCCCTATAAACATAGTCTTCATTAGGATACACGATATTGATGCTTTG
129 CATTCTTTTTATGATTAGGCCCTATAAACATTGTCTTCATTAGGATACATGATATTGATGCTTTG
* * * * *
39831 GTTTTGC-AACAAAGG-GTTTCTTCCCACCAATTGTTGTAAAGTCTAAGTTTGTGCCTCAAATGA
194 GTTTTGCAAAGAAAGGCATTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATAA
* * * *
39894 GACAAACAGGGATTCTAGTAAAGATCTTCATTCTTTTTGTGATAAGGCACTATAAACA
259 GACAAGCATGGATTCTA-TAATGATCTTCATTCTTTTTGTGGTAAGGCACTATAAACA
*
39952 CATTCTCC-TCATTAGGATAAATGACATTGATG
1 CATTCTCCTTCATTAGGATACATGACATTGATG
39984 ATTTTCTTTT
Statistics
Matches: 2712, Mismatches: 821, Indels: 589
0.66 0.20 0.14
Matches are distributed among these distances:
312 9 0.00
313 13 0.00
314 165 0.06
315 504 0.19
316 1000 0.37
317 553 0.20
318 284 0.10
319 79 0.03
320 100 0.04
321 5 0.00
ACGTcount: A:0.30, C:0.19, G:0.16, T:0.36
Consensus pattern (315 bp):
CATTCTCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCCCG
CATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGGCAAACATAATACTCATACTAATCCCCA
TTCTTTTTATGATTAGGCCCTATAAACATTGTCTTCATTAGGATACATGATATTGATGCTTTGGT
TTTGCAAAGAAAGGCATTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATAAGA
CAAGCATGGATTCTATAATGATCTTCATTCTTTTTGTGGTAAGGCACTATAAACA
Found at i:37535 original size:474 final size:475
Alignment explanation
Indices: 36139--38708 Score: 3339
Period size: 475 Copynumber: 5.4 Consensus size: 475
36129 TTCATTTTGT
* * * * * * * *
36139 GATTAGGCACTATATACACATTCTCCTCATTAGGATACACGATATTGATGCTTCGGTTTCACAGC
1 GATTAGGCCCTATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAC
* *
36204 AAAGGCTTTCTTCCCACCAATTGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGGCAAACATA-G
66 AAAGGCTTTCTTCCCACCAATTGTTGTAAAGTCTAAGTTCGTGCCTCAAATAAGACAAACA-AGG
* *
36268 ATTCTAGTAATGATCTACATTCTTTTTGTGATAAGACACTATAAACACATTCTCCTCATTAGGAT
130 ATTCTAGTAATGATCTTCATTCTTTTTGTGATAAGGCACTATAAACACATTCTCCTCATTAGGAT
* * * * * ** *
36333 AAATGAGATTGATGGTTTTTTTTGCAAGGAAATCTTTTCTTTGCCCTATT-TTTTTTAAATCAAA
195 AAATGACATTGATGTTTTTTTTTGCATGGAAATCTTTTCTTTGGCCAATTATCCTTAAAATCAAA
* * * *
36397 GTTCATCCCTTAAATAAGAAAAGCATCGATTCTCATAACAGTCTCCATTTTTTTCAAGATTGGGA
260 GTTCATCCCTTGAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGA
*
36462 AGCCAAAACACATTTCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCTCAAGAAAAGCTT
325 AGCCAAAACACATTGCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCTCAAGAAAAGCTT
*
36527 TTCTTCTCG-CAGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAGACATGAATACTCA
390 TTCTTCTCGCCA-TTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCA
*
36591 TCCTAATCCCCATTCTTTTCAT
454 TCCTAATCCCCATTCTTTTCAG
* * * *
36613 TATTAGGCCCTATAAACATTGTC-T-TCATTAGGATACATGATATTGATGCTTTGGTTTTGCAAA
1 GATTAGGCCCTATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGC-AA
* * * *
36676 AAAAGGCTTTCTTCCCACCAATTGTTGTAAAGTCTAAGTCCGTGCGTCAAATAAGACAAGCAAGG
65 CAAAGGCTTTCTTCCCACCAATTGTTGTAAAGTCTAAGTTCGTGCCTCAAATAAGACAAACAAGG
* * *
36741 ATTCTAGTAATGATCTTCATTCTTTTTGTGGTAAGGCACTATAAACACATTCTCCTTATTAGGGT
130 ATTCTAGTAATGATCTTCATTCTTTTTGTGATAAGGCACTATAAACACATTCTCCTCATTAGGAT
*
36806 AAATGACATTGATTGTTTTTTTTTTGGCTTGGAAATCTTTTCTTTGGCCAATTATCCTTAAAATC
195 AAATGACATTGA-TG-TTTTTTTTT-GCATGGAAATCTTTTCTTTGGCCAATTATCCTTAAAATC
* * * *
36871 AAAGTTCATCCCTTGAATAAGATAAGCATCGA-TCATCGTTACAGCCACCATTCTTTTCAAGATT
257 AAAGTTCATCCCTTGAATAAGACAAGCATCGATTC-TCGTAACAGTCTCCATTCTTTTCAAGATT
*
36935 GGGAAGCCAAAACACATTGCCTTCATTAGGATACATGACATTAATGCTTTGGTGTCTCAAGAAAA
321 GGGAAGCCAAAACACATTGCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCTCAAGAAAA
* * ** *
37000 GCTTTTCTTCTCG-CAGTTTTTGATAGAATCAAATTTTGTCTCTTACATAAGGGAGACATGAATA
386 GCTTTTCTTCTCGCCA-TTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATA
*
37064 CTCATCCTAATCCCCATTCTTTTCAT
450 CTCATCCTAATCCCCATTCTTTTCAG
* * * *
37090 TATTAGGCCCTATAAACATAGTC-T-TCATTAGGATACGCGATATTGATGCTTTGGTTTTGCAAA
1 GATTAGGCCCTATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAC
* * * * * *
37153 AAAGGCTTTCTTCCCACCAACTGTTGTAAAGTCTAAGTCCATGCGTCAACTAAGACAGACAAGGA
66 AAAGGCTTTCTTCCCACCAATTGTTGTAAAGTCTAAGTTCGTGCCTCAAATAAGACAAACAAGGA
*
37218 TTCTAGTAATGATCTTCATTC-TTTTGTGATAAGGCACTATAAACACATTCTCCTTATTAGGATA
131 TTCTAGTAATGATCTTCATTCTTTTTGTGATAAGGCACTATAAACACATTCTCCTCATTAGGATA
* *
37282 AATGACATTGATGGTTTTTTTTTTGCATGGAAATCTTTTCTTTGGCTAATTATCCTTAAAATAAA
196 AATGACATTGAT-G-TTTTTTTTTGCATGGAAATCTTTTCTTTGGCCAATTATCCTTAAAATCAA
* * * * *
37347 AGTTCATCCCTTGAATAAGATAAGCATCGA-TCATTGTTACAATCACCATTCTTTTCAAGATTGG
259 AGTTCATCCCTTGAATAAGACAAGCATCGATTC-TCGTAACAGTCTCCATTCTTTTCAAGATTGG
* * * * * * * **
37411 GAAGGCAAAACACTTTGCCTTCGTTAAGATACATGACATTGATGCTTTGATATCGCAAGAAAAAA
323 GAAGCCAAAACACATTGCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCTCAAGAAAAGC
* * *
37476 TTTTCGTCCCGCCATTTTTGATAGAATCAAAGTTTGTGTCTTAAATAAGACAAACATGAATACTC
388 TTTTCTTCTCGCCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTC
*
37541 A-CACTAATCCCCATTCTTTTTAG
453 ATC-CTAATCCCCATTCTTTTCAG
* *
37564 GATTAGGCACTATAGACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAC
1 GATTAGGCCCTATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAC
* * *
37629 AAAGGCTTTCTTCCCACCAATTGTTGCAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGA
66 AAAGGCTTTCTTCCCACCAATTGTTGTAAAGTCTAAGTTCGTGCCTCAAATAAGACAAACAAGGA
* *
37694 TCCTAGTAATGATCTTCATTCTTTTTGTGATACA-GCACTATAAACACATTCTCCTCATTCGGAT
131 TTCTAGTAATGATCTTCATTCTTTTTGTGATA-AGGCACTATAAACACATTCTCCTCATTAGGAT
* *** *
37758 AAATGACATTGATGATTTTTTTTGCACAAAAATCTTTTCTTTGCCCAATTATCCTTAAAATCAAA
195 AAATGACATTGATGTTTTTTTTTGCATGGAAATCTTTTCTTTGGCCAATTATCCTTAAAATCAAA
* * *
37823 GTTCATCCCTTGAATAGGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTTAAGATTGGGA
260 GTTCATCCCTTGAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGA
* * *
37888 AGCCAAAACACATTGCCTTCGTTAGGATACTTGACATTGATGCTTTGGTGTCTTAAGAAAAGCTT
325 AGCCAAAACACATTGCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCTCAAGAAAAGCTT
* * ** * *
37953 TTCTTATCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAGGATAAACATGAATACTCA-
390 TTCTTCTCGCCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCAT
* *
38017 CACTAATCCCAATTATTTT-AG
455 C-CTAATCCCCATTCTTTTCAG
* * * *
38038 GATTAGGCACC-ATAAACAAAGTCTTCTCATTAGGATACAAGATATTGATCCTTTGGTTTCGTAA
1 GATTAGGC-CCTATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAA
* * *** * * * * *
38102 CGAGGGCTTTCTTCTTTCCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGGCAAACATGG
65 CAAAGGCTTTCTTCCCACCAATTGTTGTAAAGTCTAAGTTCGTGCCTCAAATAAGACAAACAAGG
* * * *
38167 ATTCTTGTAAAGATCTTCATTATTTTT-TGGATAAGGCACTATAAACACATTCTCCGCATTAGGA
130 ATTCTAGTAATGATCTTCATTCTTTTTGT-GATAAGGCACTATAAACACATTCTCCTCATTAGGA
* *
38231 TAAATGACATTGATGATTTTGTTTTGCATCGAAATCTTTTCTTT-GCGCAATTATCCTTAAAATC
194 TAAATGACATTGATG-TTTTTTTTTGCATGGAAATCTTTTCTTTGGC-CAATTATCCTTAAAATC
* *
38295 AAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTCACAGTCTCCATT-TGTTTCAAGATT
257 AAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCT-TTTCAAGATT
* * * * * *
38359 AGGATGCCAAAACGCATTCCCTTCTTTAGGATACATGACATTAATGCTTTGGTGTCTCAAGAAAA
321 GGGAAGCCAAAACACATTGCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCTCAAGAAAA
* * * * *
38424 GCTTTTCTTCTTGCCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGGCAAACATAAATGC
386 GCTTTTCTTCTCGCCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAC
* *
38489 TCATGCTAATCCCCATTCTTTTTAG
451 TCATCCTAATCCCCATTCTTTTCAG
* * * ** *
38514 GATTAGG-CATCATAAACGA-AGTCTTCTCATTAGGATACATGATATAGATATTTTGGTTTCACA
1 GATTAGGCCCT-ATAAAC-ATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCA
* * * * ** * * *
38577 AGAAAGGCATTT-TTTCGACTAATAATTGTAAAGTCTAAGTTTGTGCCTCAAATACGACAAACAT
64 ACAAAGGC-TTTCTTCCCACCAATTGTTGTAAAGTCTAAGTTCGTGCCTCAAATAAGACAAACAA
* * * *
38641 GGATTCTACTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCTTCATTAGG
128 GGATTCTAGTAATGATCTTCATTCTTTTTGTGATAAGGCACTATAAACACATTCTCCTCATTAGG
38706 ATA
193 ATA
38709 CACGATATTG
Statistics
Matches: 1853, Mismatches: 215, Indels: 54
0.87 0.10 0.03
Matches are distributed among these distances:
472 33 0.02
473 132 0.07
474 453 0.24
475 528 0.28
476 382 0.21
477 324 0.17
478 1 0.00
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.36
Consensus pattern (475 bp):
GATTAGGCCCTATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAC
AAAGGCTTTCTTCCCACCAATTGTTGTAAAGTCTAAGTTCGTGCCTCAAATAAGACAAACAAGGA
TTCTAGTAATGATCTTCATTCTTTTTGTGATAAGGCACTATAAACACATTCTCCTCATTAGGATA
AATGACATTGATGTTTTTTTTTGCATGGAAATCTTTTCTTTGGCCAATTATCCTTAAAATCAAAG
TTCATCCCTTGAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAA
GCCAAAACACATTGCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTT
TCTTCTCGCCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATC
CTAATCCCCATTCTTTTCAG
Found at i:38764 original size:158 final size:156
Alignment explanation
Indices: 37552--39983 Score: 738
Period size: 158 Copynumber: 15.4 Consensus size: 156
37542 CACTAATCCC
* * * * *
37552 CATTCTTTTTAG-GATTAGGCACTATAGACATAGTCTTCTCATTAGGATACACGATATTGATGCT
1 CATTCTTTTT-GTGATTAGGCACTATAAACACATTCTCCTCATTAGGATACATGATATTGATGCT
* * * * *
37616 TTGGTTTCGCA-ACAAAGGCTTTCTTCCCACCAATTGTTGCAAAGTCTAAGTTCGTGCCTCAAAT
65 TCGGTTT--CATAGAAAGGCTTTCTTCCCAACAATTGTTGTAAAGTCTAAGTTTGTGCCTCAAAT
* *
37680 GAGACAAACATGGATCCTAGTAATGATCTT
128 -AGACAAACATGGATTCTACTAATGATCTT
* * * * *
37710 CATTCTTTTTGTGA-TACAGCACTATAAACACATTCTCCTCATTCGGATAAATGACATTGATGAT
1 CATTCTTTTTGTGATTA-GGCACTATAAACACATTCTCCTCATTAGGATACATGATATTGATGCT
*** * ** * * * * ** * **
37774 TTTTTTTGCACA-AAAATCTTTTCTTTGCC--CAATTATCCT-TAAAATCAAAGTTCATCCCTTG
65 TCGGTTT-CATAGAAAGGC-TTTC-TTCCCAACAATTGT--TGTAAAGTCTAAGTTTGTGCCTCA
* * *
37835 AATAGGACAAGCATCGATTCT-CGTAAT-AGTCTC
125 AATA-GACAAACATGGATTCTAC-TAATGA-TCTT
** * * * * * * *
37868 CATTCTTTTTAAGATTGGGAAGCCA-AAACACATTGC-CTTCGTTAGGATACTTGACATTGATGC
1 CATTCTTTTTGTGATTAGGCA-CTATAAACACATT-CTCCTCATTAGGATACATGATATTGATGC
* * * * ** ** * * *
37931 TTTGGTGTCTTAAGAAAAGCTTTTCTTATC-ACTGTTTTTGATAGAA-TCAAAGTTTGT-CTCTT
64 TTCGGTTTCAT-AGAAAGGC-TTTCTTCCCAACAATTGTTG-TA-AAGTCTAAGTTTGTGC-CTC
* * * * * *
37993 AAATAGGATAAACATGAATACTCAC-ACTAATC-C
124 AAATA-GACAAACATGGATTCT-ACTAATGATCTT
* * * * * * * *
38026 CAATTATTTTAG-GATTAGGCACCATAAACAAAGTCTTCTCATTAGGATACAAGATATTGATCCT
1 C-ATTCTTTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATACATGATATTGATGCT
* * * **** *
38090 TTGGTTTCGTA-ACGAGGGCTTTCTTCTTTCCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAAT
65 TCGGTTTCATAGA--AAGGCTTTCTTCCCAACAATTGTTGTAAAGTCTAAGTTTGTGCCTCAAAT
* ** *
38154 GAGGCAAACATGGATTCTTGTAAAGATCTT
128 -AGACAAACATGGATTCTACTAATGATCTT
* * * * * *
38184 CATTATTTTT-TGGATAAGGCACTATAAACACATTCTCCGCATTAGGATAAATGACATTGATGAT
1 CATTCTTTTTGT-GATTAGGCACTATAAACACATTCTCCTCATTAGGATACATGATATTGATG-C
* * * * ** * * * * ** * *
38248 TTTGTTTTGCATCGAAA-TCTTTTCTTTGC-GCAATTATCCT-TAAAATCAAAGTTCATCCCTTA
64 TTCGGTTT-CATAGAAAGGC-TTTCTTCCCAACAATTGT--TGTAAAGTCTAAGTTTGTGCCTCA
* * *
38310 AATAAGACAAGCATCGATTCT-CGTCACA-G-TCTC
125 AAT-AGACAAACATGGATTCTAC-T-A-ATGATCTT
*** * * * * *
38343 CATT-TGTTTCAAGATTAGG-ATGCCA-AAACGCATTC-CCTTCTTTAGGATACATGACATTAAT
1 CATTCT-TTTTGTGATTAGGCA--CTATAAACACATTCTCC-TCATTAGGATACATGATATTGAT
* * *** ** * *
38404 GCTTTGGTGTCTCA-AGAAAAGCTTTTCTT-CTTGCCGTTTTTGATAGAA-TCAAAGTTTGT-CT
62 GCTTCGGT-T-TCATAGAAAGGC-TTTCTTCCCAACAATTGTTG-TA-AAGTCTAAGTTTGTGC-
* * ** * ** * **
38465 CTTAAATAAGGCAAACATAAATGCT-CATGCTAATCCC
121 CTCAAAT-AGACAAACATGGATTCTAC-TAATGATCTT
* * * *
38502 CATTCTTTTTAG-GATTAGGCA-TCATAAACGA-AGTCTTCTCATTAGGATACATGATATAGATA
1 CATTCTTTTT-GTGATTAGGCACT-ATAAAC-ACATTCTCCTCATTAGGATACATGATATTGATG
* * * * * **
38564 TTTTGGTTTCACAAGAAAGGCATTT-TT-TCGACTAATAATTGTAAAGTCTAAGTTTGTGCCTCA
63 CTTCGGTTTCA-TAGAAAGGC-TTTCTTCCCAAC-AATTGTTGTAAAGTCTAAGTTTGTGCCTCA
38627 AATACGACAAACATGGATTCTACTAATGATCTT
125 AATA-GACAAACATGGATTCTACTAATGATCTT
* * *
38660 CATTCATTTTGTGATTAGGCACTATAAACACATTCTCTTCATTAGGATACACGATATTGATGCTT
1 CATTCTTTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTT
*
38725 CGGTTTCATAGCAAAGGCTTTCTTCCCAACAATTGTTGTAAAGTCTAAGTTCGTGCCTCAAATGA
66 CGGTTTCATAG-AAAGGCTTTCTTCCCAACAATTGTTGTAAAGTCTAAGTTTGTGCCTCAAAT-A
*
38790 GACAAACATGGATTCTAGTAATGAT-TT
129 GACAAACATGGATTCTACTAATGATCTT
* * * *
38817 ACATTCTTTTTGTGATAAGGCACTATAAACACATTCTCCTCATTAGGATAAATGAGATTGATGGT
1 -CATTCTTTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATACATGATATTGATGCT
*** * *** * * * * * * ** * **
38882 TTTTTTTGCATGGAAATATTTTCTTTGCC--CTATTTTTTTAAAAATCAAAGTTCATCCCTTGAA
65 TCGGTTT-CATAGAAAGGCTTTC-TTCCCAACAATTGTTGT-AAAGTCTAAGTTTGTGCCTCAAA
* * *
38945 TAGGACAAGCATCGATTCT-CGTAAT-AGTCTC
127 TA-GACAAACATGGATTCTAC-TAATGA-TCTT
** * * * * * * *
38976 CATTCTTTTTAAGATTGGGAAGCCA-AAACACATTGC-CTTCGTTAGGATACTTGACATTGATGC
1 CATTCTTTTTGTGATTAGGCA-CTATAAACACATT-CTCCTCATTAGGATACATGATATTGATGC
** * * ** * * * *
39039 TTTATGTCTCA-AGAAAAGCTTTTCTTCCC-ACCGTTTTTG-AGAGAATCAAAGTTTGT-CTCTT
64 -TTCGGTTTCATAGAAAGGC-TTTCTTCCCAACAATTGTTGTA-A-AGTCTAAGTTTGTGC-CTC
* *
39100 AAATAAGGCAAACATGG-TTGCTCATGCTAAT--TC-C
124 AAAT-AGACAAACATGGATT-CT-A--CTAATGATCTT
* * * * * *
39134 CCTTCTTTTCTG-GACTAGGCA-TCATAAATGA-AGTT-TTCTTATTCGGATACATGATATTGAT
1 CATTCTTTT-TGTGATTAGGCACT-ATAAA-CACA-TTCTCCTCATTAGGATACATGATATTGAT
** * * ** * *
39195 ATTTTGGTTTCACAAGAAAGGCATTT-TTTTCAACAATAT-TTGTAAAGTTTAGGTTTGTGCCTC
62 GCTTCGGTTTCA-TAGAAAGGC-TTTCTTCCCAACAAT-TGTTGTAAAGTCTAAGTTTGTGCCTC
39258 AAAT-GCAACAAACATGGATTCTACTAATGATCTT
124 AAATAG--ACAAACATGGATTCTACTAATGATCTT
* * * * *
39292 CATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGACACACGTTATTGACGCTT
1 CATTCTTTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTT
* * *
39357 C-GTTTCATAGCCAAGGATTTCTTCCCACCAATTGTTGTAAAGTCTAAGTTTGTGCCTCAAATGA
66 CGGTTTCATAG-AAAGGCTTTCTTCCCAACAATTGTTGTAAAGTCTAAGTTTGTGCCTCAAAT-A
* * *
39421 GACAAACAGGGATTCTAGTAAAGATCTT
129 GACAAACATGGATTCTACTAATGATCTT
* * * *
39449 CATTCTTTTTGTGATAAGGCACTATAAACACATTCTCCTCATTAGGATAAATGACATTGATGATT
1 CATTCTTTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATACATGATATTGATG--C
* * * * * * ** ** * *
39514 TTC-TTTTGCATGGAAA-TCTTTTCTTTGCC--CAATTATCAT-TAAAATGAAAGTTCATCCCTT
64 TTCGGTTT-CATAGAAAGGC-TTTC-TTCCCAACAATTGT--TGTAAAGTCTAAGTTTGTGCCTC
* * * * * * *
39574 GAATAAGGCAAGCGTTGATTCT-CATAGT-AGTC-C
124 AAAT-AGACAAACATGGATTCTAC-TAATGA-TCTT
** * * * ** * *
39607 CATTCTTTTTAAGATTGGGAAGCTA-AAACACATTGC-CTTTGTTAGGATACACGACATTGATGC
1 CATTCTTTTTGTGATTAGGCA-CTATAAACACATT-CTCCTCATTAGGATACATGATATTGATGC
* * * * * ***** * * * *
39670 TTTGGGGTCTCA-AGAAAAGCTTTTCTGCTCGTGGTTTTTTATAGAA-TCAAAGTTTGT-CTCTT
64 -TT-CGGTTTCATAGAAAGGC-TTTCTTCCCAACAATTGTTGTA-AAGTCTAAGTTTGTGC-CTC
* * ** * **
39732 AAATAAGACAAACATGAATACT-CATCCTAATCCC
124 AAAT-AGACAAACATGGATTCTAC-TAATGATCTT
** * * * * *
39766 CATTCTTTTCATTATTAGGCCCTATAAACATAGTCT--TCATTAGGATACACGATATTGATGCTT
1 CATTCTTTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTT
* * * *
39829 TGGTTTTGCA-ACAAAGGGTTTCTTCCCACCAATTGTTGTAAAGTCTAAGTTTGTGCCTCAAATG
66 CGG-TTT-CATAGAAAGGCTTTCTTCCCAACAATTGTTGTAAAGTCTAAGTTTGTGCCTCAAAT-
* * *
39893 AGACAAACAGGGATTCTAGTAAAGATCTT
128 AGACAAACATGGATTCTACTAATGATCTT
* * *
39922 CATTCTTTTTGTGATAAGGCACTATAAACACATTCTCCTCATTAGGATAAATGACATTGATG
1 CATTCTTTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATACATGATATTGATG
39984 ATTTTCTTTT
Statistics
Matches: 1674, Mismatches: 439, Indels: 322
0.69 0.18 0.13
Matches are distributed among these distances:
155 9 0.01
156 91 0.05
157 289 0.17
158 848 0.51
159 402 0.24
160 27 0.02
161 7 0.00
162 1 0.00
ACGTcount: A:0.30, C:0.18, G:0.16, T:0.36
Consensus pattern (156 bp):
CATTCTTTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTT
CGGTTTCATAGAAAGGCTTTCTTCCCAACAATTGTTGTAAAGTCTAAGTTTGTGCCTCAAATAGA
CAAACATGGATTCTACTAATGATCTT
Found at i:39065 original size:950 final size:937
Alignment explanation
Indices: 36165--39070 Score: 3113
Period size: 950 Copynumber: 3.1 Consensus size: 937
36155 CACATTCTCC
* * *
36165 TCATTAGGATACACGATATTGATGCTTCGGTTTCACAGCAAAGGCTTTCTTCCCACCAATTGTTG
1 TCATTAGGATACAAGATATTGATGCTTTGGTTTCA-AG-AAAAGCTTTCTTCCCACCAATTGTTG
* * *
36230 TAAAGTCTAAGTTCGTGCCTCAAATGAGGCAAACATAGATTCTAGTAATGATCTACATTCTTTTT
64 TAAAGTCTAAGTTCGTGCCTCAAATGAGGCAAACATGGATTCTAGTAATGATCTTCATTTTTTTT
* * * *
36295 GTGATAAGACACTATAAACACATTCTCCTCATTAGGATAAATGAGATTGATGGTTTTTTTTGCAA
129 G-GATAAGGCACTATAAACACATTCTCCTCATTAGGATAAATGACATTGATGATTTTTTTTGCAT
* * ** *
36360 GGAAATCTTTTCTTTGCCCTATT-TTTTTTAAATCAAAGTTCATCCCTTAAATAAGAAAAGCATC
193 GGAAATCTTTTCTTTGCGCAATTATCCTTAAAATCAAAGTTCATCCCTTAAATAAGAAAAGCATC
* *
36424 GATTCTCATAACAGTCTCCATTTTTTTCAAGATTGGGAAGCCAAAACACATTTCCTTCATTAGGA
258 GATTCTCGTAACAGTCTCCA-TTTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGA
*
36489 TACATGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCTCGCAGTTTTTGATAGAATCA
322 TACATGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCTCGCCGTTTTTGATAGAATCA
* * * **
36554 AAGTTTGTCTCTTAAATAAGACAGACATGAATACTCATCCTAATCCCCATTCTTTTCATTATTAG
387 AAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTTAGGATTAG
* *
36619 GCCCTATAAACATTGTC-T-TCATTAGGATACATGATATTGATGCTTTGGTTTTGCA-AAAAAAG
452 GCACTATAAACATAGTCTTCTCATTAGGATACATGATATTGATGCTTTGG-TTT-CACAAAAAAG
* * * *
36681 GCTTTCTTCCCACCAATTGTTGTAAAGTCTAAGTCCGTGCGTCAAATAAGACAAGCAAGGATTCT
515 GCTTTCTTCCCACCAATTGTTGTAAAGTCTAAGTTCGTGCCTCAAAT-AGACAAACATGGATTCT
* * *
36746 AGTAATGATCTTCATTCTTTTTGTGGTAAGGCACTATAAACACATTCTCCTT-ATTAGGGTAAAT
579 AGTAATGATCTTCATTCTTTTTGTGATTAGGCACTATAAACACATTCT-CTTCATTAGGATAAAT
* * * *
36810 GACATTGATTGTTTTTTTTTTGGCTTGGAAATCTTTTCTTTGGCCAATTATCCTTAAAATCAAAG
643 GACATTGA-TG-ATTTTTTTT-GCATAGAAATCTTTTCTTTGCCCAATTAT-CTTAAAATCAAAG
* * * * * *
36875 TTCATCCCTTGAATAAGATAAGCATCGA-TCATCGTTACAGCCACCATTCTTTTCAAGATTGGGA
704 TTCATCCCTTGAAT-AGACAAGCATCGATTC-TCGTAATATCTA-CATTCTTTTTAAGATTGGGA
* * *
36939 AGCCAAAACACATTGCCTTCATTAGGATACATGACATTAATGCTTTGGTGTCTCAAGAAAAGCTT
766 AGCCAAAACACATTGCCTTCATTAGGATACATGACATTGATGCTTT-GTTTTTCAAGAAAAGCTT
* * * *
37004 TTCTTCTCGC-AGTTTTTGATAGAATCAAATTTTGTCTCTTACATAAGG-GAGACATGAATACTC
830 TTCTTATCACTAGTTTTTGATAGAATCAAAGTTTGTCTCTTA-AT-AGGAAAG-CATGAATACTC
* * ** * * * *
37067 ATCCTAATCCCCATTCTTTTCATTATTAGGCCCTATAA-ACATAGTCT
892 ATACTAAT-CCCATTCTTTTTAAGATTAGGACC-AAAACACATTGCCT
** *
37114 TCATTAGGATACGCGATATTGATGCTTTGGTTTTGCAA-AAAAGGCTTTCTTCCCACCAACTGTT
1 TCATTAGGATACAAGATATTGATGCTTTGG-TTT-CAAGAAAA-GCTTTCTTCCCACCAATTGTT
* * * * * * * * *
37178 GTAAAGTCTAAGTCCATGCGTCAACTAAGACAGACAAGGATTCTAGTAATGATCTTCA-TTCTTT
63 GTAAAGTCTAAGTTCGTGCCTCAAATGAGGCAAACATGGATTCTAGTAATGATCTTCATTTTTTT
* *
37242 TGTGATAAGGCACTATAAACACATTCTCCTTATTAGGATAAATGACATTGATGGTTTTTTTTTTG
128 TG-GATAAGGCACTATAAACACATTCTCCTCATTAGGATAAATGACATTGAT-G-ATTTTTTTTG
* * *
37307 CATGGAAATCTTTTCTTTG-GCTAATTATCCTTAAAATAAAAGTTCATCCCTTGAATAAGATAAG
190 CATGGAAATCTTTTCTTTGCGC-AATTATCCTTAAAATCAAAGTTCATCCCTTAAATAAGAAAAG
* * * * * * * *
37371 CATCGA-TCATTGTTACAATCACCATTCTTTTCAAGATTGGGAAGGCAAAACACTTTGCCTTCGT
254 CATCGATTC-TCGTAACAGTCTCCATT-TTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCAT
* * * * ** * * *
37435 TAAGATACATGACATTGATGCTTTGATATCGCAAGAAAAAATTTTCGTCCCGCCATTTTTGATAG
317 TAGGATACATGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCTCGCCGTTTTTGATAG
* *
37500 AATCAAAGTTTGTGTCTTAAATAAGACAAACATGAATACTCACACTAATCCCCATTCTTTTTAGG
382 AATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTTAGG
* * * *
37565 ATTAGGCACTATAGACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACA
447 ATTAGGCACTATAAACATAGTCTTCTCATTAGGATACATGATATTGATGCTTTGGTTTCACAAAA
*
37630 AAGGCTTTCTTCCCACCAATTGTTGCAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGAT
512 AAGGCTTTCTTCCCACCAATTGTTGTAAAGTCTAAGTTCGTGCCTCAAAT-AGACAAACATGGAT
* * * *
37695 CCTAGTAATGATCTTCATTCTTTTTGTGA-TACAGCACTATAAACACATTCTCCTCATTCGGATA
576 TCTAGTAATGATCTTCATTCTTTTTGTGATTA-GGCACTATAAACACATTCTCTTCATTAGGATA
* *
37759 AATGACATTGATGATTTTTTTTGCACAAAAATCTTTTCTTTGCCCAATTATCCTTAAAATCAAAG
640 AATGACATTGATGATTTTTTTTGCATAGAAATCTTTTCTTTGCCCAATTAT-CTTAAAATCAAAG
*
37824 TTCATCCCTTGAATAGGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTTAAGATTGGGAA
704 TTCATCCCTTGAATA-GACAAGCATCGATTCTCGTAATA-TCTACATTCTTTTTAAGATTGGGAA
* * *
37889 GCCAAAACACATTGCCTTCGTTAGGATACTTGACATTGATGCTTTGGTGTCTT-AAGAAAAGCTT
767 GCCAAAACACATTGCCTTCATTAGGATACATGACATTGATGCTTT-GT-TTTTCAAGAAAAGCTT
*
37953 TTCTTATCACT-GTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAGGATAAACATGAATACTCA
830 TTCTTATCACTAGTTTTTGATAGAATCAAAGTTTGTCTCTT-AATAGGA-AAGCATGAATACTCA
* * * * * *
38017 CACTAATCCCAATT-ATTTTAGGATTAGGCACCATAAACAAAGT-CTT
893 TACTAATCCC-ATTCTTTTTAAGATTAGG-ACCA-AAACACATTGCCT
* ** *** *
38063 CTCATTAGGATACAAGATATTGATCCTTTGGTTTCGTAACG-AGGGCTTTCTTCTTTCCAATTTT
1 -TCATTAGGATACAAGATATTGATGCTTTGGTTTC--AA-GAAAAGCTTTCTTCCCACCAATTGT
* * *
38127 TGTAAAGTCTAAGTTTGTGCCTCAAATGAGGCAAACATGGATTCTTGTAAAGATCTTCATTATTT
62 TGTAAAGTCTAAGTTCGTGCCTCAAATGAGGCAAACATGGATTCTAGTAATGATCTTCATT-TTT
*
38192 TTTGGATAAGGCACTATAAACACATTCTCCGCATTAGGATAAATGACATTGATGATTTTGTTTTG
126 TTTGGATAAGGCACTATAAACACATTCTCCTCATTAGGATAAATGACATTGATGATTTT-TTTTG
* *
38257 CATCGAAATCTTTTCTTTGCGCAATTATCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGC
190 CATGGAAATCTTTTCTTTGCGCAATTATCCTTAAAATCAAAGTTCATCCCTTAAATAAGAAAAGC
* * * * *
38322 ATCGATTCTCGTCACAGTCTCCATTTGTTTCAAGATTAGGATGCCAAAACGCATTCCCTTCTTTA
255 ATCGATTCTCGTAACAGTCTCCATTT-TTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTA
* *
38387 GGATACATGACATTAATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCTTGCCGTTTTTGATAGAA
319 GGATACATGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCTCGCCGTTTTTGATAGAA
* * * *
38452 TCAAAGTTTGTCTCTTAAATAAGGCAAACATAAATGCTCATGCTAATCCCCATTCTTTTTAGGAT
384 TCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTTAGGAT
* ** *
38517 TAGGCA-TCATAAACGA-AGTCTTCTCATTAGGATACATGATATAGATATTTTGGTTTCACAAGA
449 TAGGCACT-ATAAAC-ATAGTCTTCTCATTAGGATACATGATATTGATGCTTTGGTTTCACAAAA
* * * ** *
38580 AAGGCATTT-TTTCGACTAATAATTGTAAAGTCTAAGTTTGTGCCTCAAATACGACAAACATGGA
512 AAGGC-TTTCTTCCCACCAATTGTTGTAAAGTCTAAGTTCGTGCCTCAAATA-GACAAACATGGA
* *
38644 TTCTACTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCTTCATTAGGATA
575 TTCTAGTAATGATCTTCATTCTTTTTGTGATTAGGCACTATAAACACATTCTCTTCATTAGGATA
* * * * *** * * * *
38709 CACGATATTGATGCTTCGGTTT-CATAGCAAAGGC-TTTC-TTCCCAACAATTGT-TGTAAAGTC
640 AATGACATTGATGATTTTTTTTGCATAG-AAA-TCTTTTCTTTGCC--CAATTATCT-TAAAATC
* * * ** * * * * ** **
38770 TAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATTTACATTCTTTTTGTGATAA
700 AAAGTTCATCCCTTGAAT-AGACAAGCATCGATTCTCGTAAT-ATCTACATTCTTTTTAAGATTG
* * * * * * * *
38835 GGCA-CTATAAACACATT-CTCCTCATTAGGATAAATGAGATTGATGGTTT-TTTTTGCATGGAA
763 GGAAGCCA-AAACACATTGC-CTTCATTAGGATACATGACATTGATGCTTTGTTTTT-CAAGAAA
** * * * * ** *
38897 ATATTTTCTT-TGCCCTATTTTTTTA-AAAATCAAAGTTCATCCCTTGAATAGGACAAGCATCG-
825 AGCTTTTCTTAT-CACTAGTTTTTGATAGAATCAAAGTTTGTCTCTT-AATAGGA-AAGCAT-GA
* * * * *
38959 ATTCTCGTAATAGTCTCCATTCTTTTTAAGATTGGGAAGCCAAAACACATTGCCT
886 ATACTCATACTAATC-CCATTCTTTTTAAGATTAGG-A-CCAAAACACATTGCCT
* ** * * *
39014 TCGTTAGGATACTTGACATTGATGCTTTATGTCTCAAGAAAAGCTTTTCTTCCCACC
1 TCATTAGGATACAAGATATTGATGCTTT-GGTTTCAAGAAAAGC-TTTCTTCCCACC
39071 GTTTTTGAGA
Statistics
Matches: 1632, Mismatches: 262, Indels: 125
0.81 0.13 0.06
Matches are distributed among these distances:
947 3 0.00
948 78 0.05
949 388 0.24
950 702 0.43
951 297 0.18
952 135 0.08
953 29 0.02
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.36
Consensus pattern (937 bp):
TCATTAGGATACAAGATATTGATGCTTTGGTTTCAAGAAAAGCTTTCTTCCCACCAATTGTTGTA
AAGTCTAAGTTCGTGCCTCAAATGAGGCAAACATGGATTCTAGTAATGATCTTCATTTTTTTTGG
ATAAGGCACTATAAACACATTCTCCTCATTAGGATAAATGACATTGATGATTTTTTTTGCATGGA
AATCTTTTCTTTGCGCAATTATCCTTAAAATCAAAGTTCATCCCTTAAATAAGAAAAGCATCGAT
TCTCGTAACAGTCTCCATTTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACA
TGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCTCGCCGTTTTTGATAGAATCAAAGT
TTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTTAGGATTAGGCAC
TATAAACATAGTCTTCTCATTAGGATACATGATATTGATGCTTTGGTTTCACAAAAAAGGCTTTC
TTCCCACCAATTGTTGTAAAGTCTAAGTTCGTGCCTCAAATAGACAAACATGGATTCTAGTAATG
ATCTTCATTCTTTTTGTGATTAGGCACTATAAACACATTCTCTTCATTAGGATAAATGACATTGA
TGATTTTTTTTGCATAGAAATCTTTTCTTTGCCCAATTATCTTAAAATCAAAGTTCATCCCTTGA
ATAGACAAGCATCGATTCTCGTAATATCTACATTCTTTTTAAGATTGGGAAGCCAAAACACATTG
CCTTCATTAGGATACATGACATTGATGCTTTGTTTTTCAAGAAAAGCTTTTCTTATCACTAGTTT
TTGATAGAATCAAAGTTTGTCTCTTAATAGGAAAGCATGAATACTCATACTAATCCCATTCTTTT
TAAGATTAGGACCAAAACACATTGCCT
Found at i:40141 original size:632 final size:626
Alignment explanation
Indices: 35512--39970 Score: 3021
Period size: 632 Copynumber: 7.1 Consensus size: 626
35502 TTCTTTTTAG
* * * * * * ** *
35512 GATTAGGCACCATAAACATAGTCTTCTCATTAGGATACAGGATATTGATGCTTTGGTTTCGCAAC
1 GATTAGGCACTATAAACACATTCTCCTCATTAGGATACACGATATTGATGC-TTCGTTTCATAGC
** * * * *
35577 AAAGGCTTTCTTCTTTCCAATTTTTGTAAAGTCTATGTTCGTGCCTTAAATGAGGCAAACATGGA
65 AAA-GCTTTCTT-TCCCCAATTGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGA
* * * * * *
35642 TTCTTGTAA-AGATCTTCATTATTTTTTTGGTAAGGCACTATAAACACATTCTCCGCATTAGGAT
128 TTCTAGTAATAGATCTACATTCTTTTTGTGATAAGGCACTATAAACACATTCTCCTCATTAGGAT
* * ** *
35706 AAATGGCATTGATGATTTTGTTTTGCATCGAAATCTTTTCTTTGTGCAATTAT-ACTTAAAGTCA
193 AAATGACATTGATGATTTT-TTTTGCATGGAAATCTTTTCTTTGCCCAATTATCA-TTAAAATCA
* * * * * * *
35770 AAGTTCATCCCTTAAATTAGACAAGCATCGATTCTCGTGACAG----C-TT-GTTTCAAGATTAG
256 AAGTTCATCCCTTGAATAAGGCAAGCATCGATTCTCGT-ATAGTCTCCATTCTTTTTAAGATTGG
* ** * * *
35829 GATGCCAAAATGCATTCCCTTCT-TTACGAT-CATGACATTAATGCTTTGGTGTCTCAAGAAAAG
320 GAAGCCAAAACACATTGCCTT-TGTTAGGATACATGACATTGATGCTTTGGTGTCTCAAGAAAAG
* * * *
35892 CTTTTCTTCCCGACATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGGCAAACATAAATGCT
384 CTTTTCTTCTCGCCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGGCAAACATGAATGCT
* * *
35957 CATGCTAATCCCCATTCTTTTTAGGGTTAGGCATCATAAACGAAGTCTTCTCATTAGGATACATG
449 CATGCTAATCCCCATTCTTTTCATGATTAGGCATCATAAAC-AAGTC-T-TCATTAGGATACATG
* * *
36022 ATATTGATATTTTGGTTTCGCAAGAAAGGCATTTTTTCGACCATTATTTGTAAAGTCTAAGTTTG
511 ATATTGATATTTTGGTTTCACAAGAAAGGCATTTTTTCCACCAAT-TTTGTAAAGTCTAAGTTTG
* *
36087 TGCCTCAAATGCGACAAACATGGATTCTACTAATGATCTTTATTCATTTTGT
575 TGCCTCAAATGAGACAAACATGGATTCTACTAATGATCTTCATTCATTTTGT
* *
36139 GATTAGGCACTATATACACATTCTCCTCATTAGGATACACGATATTGATGCTTCGGTTTCACAGC
1 GATTAGGCACTATAAACACATTCTCCTCATTAGGATACACGATATTGATGCTTC-GTTTCATAGC
* * *
36204 AAAGGCTTTCTTCCCACCAATTGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGGCAAACATAGA
65 AAA-GCTTTCTTTCC-CCAATTGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGA
*
36269 TTCTAGTAAT-GATCTACATTCTTTTTGTGATAAGACACTATAAACACATTCTCCTCATTAGGAT
128 TTCTAGTAATAGATCTACATTCTTTTTGTGATAAGGCACTATAAACACATTCTCCTCATTAGGAT
* * * * ** *
36333 AAATGAGATTGATGGTTTTTTTTGCAAGGAAATCTTTTCTTTGCCCTATT-TTTTTTAAATCAAA
193 AAATGACATTGATGATTTTTTTTGCATGGAAATCTTTTCTTTGCCCAATTATCATTAAAATCAAA
* ** * *
36397 GTTCATCCCTTAAATAAGAAAAGCATCGATTCTCATAACAGTCTCCATT-TTTTTCAAGATTGGG
258 GTTCATCCCTTGAATAAGGCAAGCATCGATTCTCGT-ATAGTCTCCATTCTTTTT-AAGATTGGG
* **
36461 AAGCCAAAACACATTTCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCTCAAGAAAAGCT
321 AAGCCAAAACACATTGCCTTTGTTAGGATACATGACATTGATGCTTTGGTGTCTCAAGAAAAGCT
* * * *
36526 TTTCTTCTCGCAGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAGACATGAATACTCA
386 TTTCTTCTCGCCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGGCAAACATGAATGCTCA
* * * *
36591 TCCTAATCCCCATTCTTTTCATTATTAGGC-CCTATAAACATTGTCTTCATTAGGATACATGATA
451 TGCTAATCCCCATTCTTTTCATGATTAGGCATC-ATAAACA-AGTCTTCATTAGGATACATGATA
** * * **
36655 TTGATGCTTTGGTTTTGCA-AAAAAAGGC-TTTCTTCCCACCAATTGTTGTAAAGTCTAAGTCCG
514 TTGATATTTTGG-TTT-CACAAGAAAGGCATTT-TTTCCACCAATT-TTGTAAAGTCTAAGTTTG
* * * * * *
36718 TGCGTCAAATAAGACAAGCAAGGATTCTAGTAATGATCTTCATTCTTTTTGT
575 TGCCTCAAATGAGACAAACATGGATTCTACTAATGATCTTCATTCATTTTGT
* * * * * * * * **
36770 GGTAAGGCACTATAAACACATTCTCCTTATTAGGGTAAATGACATTGATTGTTTTTTTTTTGGC-
1 GATTAGGCACTATAAACACATTCTCCTCATTAGGATACACGATATTGA-TG--CTTCGTTT--CA
* * * ** * * * * * ** * * *
36834 TTGGAAATCTTTTCTTTGGCCAATTATCCT-TAAAATCAAAGTTCATCCCTTGAATAAGATAAGC
61 TAGCAAAGC-TTTCTTTCCCCAATTGT--TGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAAC
* * * * * *** ** * * *
36898 ATCGA-TCATCGT--TACAGCCACCATTCTTTTCAAGATTGGGAAGCCA-AAACACATTGC-CTT
123 ATGGATTC-TAGTAATAGATCTA-CATTCTTTTTGTGATAAGGCA-CTATAAACACATT-CTCCT
* * * * * * * * * * *
36958 CATTAGGATACATGACATTAATGCTTTGGTGTCT-CAAGAAAAGCTTTTCTTCT-CGCAGTTTTT
184 CATTAGGATAAATGACATTGATGATTT--TTTTTGCATGGAAATCTTTTCTT-TGCCCA-ATTAT
* * * ** * * * * * * *
37021 GA-TAGAATCAAATTTTGTCTCTT-ACATAAGG-GAGACAT-GAATACTCATCCTAATCCCCATT
245 CATTAAAATCAAAGTTCATCCCTTGA-ATAAGGCAAG-CATCG-ATTCTCGT-ATAGTCTCCATT
* ** * * * * * ** ** *
37082 CTTTTCATTATTAGG--CCCTATAA-ACATAGTCTTCATTAGGATACGCGATATTGATGCTTTGG
306 CTTTTTAAGATTGGGAAGCC-AAAACACATTGCCTTTGTTAGGATACATGACATTGATGCTTTGG
* * * ** * * *
37144 T-TTTGCAA-AAAAGGC-TTTCTTCCCACCAACTGTTG-TA-AAGTCTAAGTCCATG-CGTC--A
370 TGTCT-CAAGAAAA-GCTTTTCTTCTCGCC-GTTTTTGATAGAA-TCAAAGT--TTGTC-TCTTA
* * * * * * ** * ** * *
37201 ACTAAGACAGACAAGGATTCT-AGTAATGATCTTCATTCTTTT-GTGATAAGGCA-CTATAAACA
428 AATAAGGCAAACATGAATGCTCA-TGCTAATCCCCATTCTTTTCATGATTAGGCATC-ATAAACA
* * * * * ** ** * * **
37263 CATTCTCCTTATTAGGATAAATGACATTGATGGTTTTTTTTTTGCATGGAAA-TC-TTTTCTTTG
491 -AGTCT--TCATTAGGATACATGATATTGAT-ATTTTGGTTTCACA-AGAAAGGCATTTT-TTCC
* * * ** ** * ** * * * * ** * **
37326 GCTAATTATCCT-TAAAATAAAAGTTCATCCCTTGAATAAGATAAGCATCGA-TCATTGTTACAA
550 ACCAATT-T--TGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATGGATTC-TACTAATGA
** **
37389 TCACCATTC-TTTTCAA
611 TCTTCATTCATTTT-GT
* * * * * * * *
37405 GATTGGGAAGGC-A-AAACAC-TT-TGCCTTCGTTAAGATACATGACATTGATGCTTTGATATCG
1 GATTAGGCA--CTATAAACACATTCT-CC-TCATTAGGATACACGATATTGATGCTTCG-T-T-T
* ** * * * * * * * *
37466 CA-AGAAAAAATTT-TCGTCCCGCCATTTTTGATAGAA-TCAAAGTTTGTGTCTTAAATAAGACA
59 CATAGCAAAGCTTTCT-TTCCC-CAATTGTTG-TA-AAGTCTAAGTTCGTGCCTCAAATGAGACA
* * * * ** * * * * *
37528 AACATGAATACTCA-CACTA-ATCCCCATTCTTTTTAG-GATTAGGCACTATAGACATAGTCTTC
120 AACATGGATTCT-AGTAATAGATCTACATTCTTTTT-GTGATAAGGCACTATAAACACATTCTCC
* * * * * * ** * ** *
37590 TCATTAGGATACACGATATTGATGCTTTGGTTTCGCA-ACAAAGGC-TTTCTTCCCACCAATTGT
183 TCATTAGGATAAATGACATTGATGATTT-TTTTTGCATGGAAA-TCTTTTCTTTGC-CCAATTAT
* * * * * ** * * * * * * *
37653 --TGCAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATCCTAGTA-ATGATCTTCATTC
245 CAT-TAAAATCAAAGTTCATCCCTTGAATAAGGCAAGCATCGATTCTCGTATA-G-TCTCCATTC
** *** * * * ** * * *
37715 TTTTTGTGATACAGCA-CTATAAACACATT-CTCCTCATTCGGATAAATGACATTGATGATTT--
307 TTTTTAAGATTGGGAAGCCA-AAACACATTGC-CTTTGTTAGGATACATGACATTGATGCTTTGG
* * * * * *** * ** * *
37776 TTTTTGCACA-AAAATCTTTTCTT-T-GCCCAATTATCCTTAAAATCAAAGTTCATCCCTTGAAT
370 TGTCT-CA-AGAAAAGCTTTTCTTCTCG-CC-GTTTTTGATAGAATCAAAGTTTGTCTCTTAAAT
* * * ** * * * * * * *
37838 -AGGACAAGCATCG-ATTCTCGTAATAGTCTCCATTCTTTTTAAGATTGGGAAGCCA-AAACACA
431 AAGG-CAAACAT-GAATGCTCATGCTAATCCCCATTCTTTTCATGATTAGGCA-TCATAAACA-A
* * * * ** * ** * * *
37900 TTGCCTTCGTTAGGATACTTGACATTGATGCTTTGGTGTCTTAAGAAAAGC-TTTTCTTATCACT
492 --GTCTTCATTAGGATACATGATATTGATATTTTGGTTTCACAAGAAAGGCATTTT-TT-CCACC
** * * * * * * *
37964 GTTTTTGATAGAA-TCAAAGTTTGT-CTCTTAAAT-AGGATAAACATGAATACTCAC-ACTAATC
553 AATTTTG-TA-AAGTCTAAGTTTGTGC-CTCAAATGA-GACAAACATGGATTCT-ACTAATGATC
*
38025 -CCAATT-ATTTTAG-
613 TTC-ATTCATTTT-GT
* * * * * * * * *
38038 GATTAGGCACCATAAACAAAGTCTTCTCATTAGGATACAAGATATTGATCCTTTGGTTTCGTAAC
1 GATTAGGCACTATAAACACATTCTCCTCATTAGGATACACGATATTGATGC-TTCGTTTCATAGC
** ** * * *
38103 GAGGGCTTTCTTCTTTCCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGGCAAACATGGA
65 -AAAGCTTTCTT-TCCCCAATTGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGA
* * * *
38168 TTCTTGTAA-AGATCTTCATTATTTTT-TGGATAAGGCACTATAAACACATTCTCCGCATTAGGA
128 TTCTAGTAATAGATCTACATTCTTTTTGT-GATAAGGCACTATAAACACATTCTCCTCATTAGGA
* * *
38231 TAAATGACATTGATGATTTTGTTTTGCATCGAAATCTTTTCTTTGCGCAATTATCCTTAAAATCA
192 TAAATGACATTGATGATTTT-TTTTGCATGGAAATCTTTTCTTTGCCCAATTATCATTAAAATCA
* * * * *
38296 AAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTCACAGTCTCCATT-TGTTTCAAGATTA
256 AAGTTCATCCCTTGAATAAGGCAAGCATCGATTCTCGT-ATAGTCTCCATTCT-TTTTAAGATTG
* * * *
38360 GGATGCCAAAACGCATTCCCTTCT-TTAGGATACATGACATTAATGCTTTGGTGTCTCAAGAAAA
319 GGAAGCCAAAACACATTGCCTT-TGTTAGGATACATGACATTGATGCTTTGGTGTCTCAAGAAAA
* *
38424 GCTTTTCTTCTTGCCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGGCAAACATAAATGC
383 GCTTTTCTTCTCGCCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGGCAAACATGAATGC
* *
38489 TCATGCTAATCCCCATTCTTTTTAGGATTAGGCATCATAAACGAAGTCTTCTCATTAGGATACAT
448 TCATGCTAATCCCCATTCTTTTCATGATTAGGCATCATAAAC-AAGTC-T-TCATTAGGATACAT
* * * *
38554 GATATAGATATTTTGGTTTCACAAGAAAGGCATTTTTTCGACTAATAATTGTAAAGTCTAAGTTT
510 GATATTGATATTTTGGTTTCACAAGAAAGGCATTTTTTCCACCAAT-TTTGTAAAGTCTAAGTTT
38619 GTGCCTCAAAT-ACGACAAACATGGATTCTACTAATGATCTTCATTCATTTTGT
574 GTGCCTCAAATGA-GACAAACATGGATTCTACTAATGATCTTCATTCATTTTGT
*
38672 GATTAGGCACTATAAACACATTCTCTTCATTAGGATACACGATATTGATGCTTCGGTTTCATAGC
1 GATTAGGCACTATAAACACATTCTCCTCATTAGGATACACGATATTGATGCTTC-GTTTCATAGC
38737 AAAGGCTTTC-TTCCCAACAATTGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGG
65 AAA-GCTTTCTTTCCC--CAATTGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGG
*
38801 ATTCTAGTAAT-GATTTACATTCTTTTTGTGATAAGGCACTATAAACACATTCTCCTCATTAGGA
127 ATTCTAGTAATAGATCTACATTCTTTTTGTGATAAGGCACTATAAACACATTCTCCTCATTAGGA
* * * * **
38865 TAAATGAGATTGATGGTTTTTTTTGCATGGAAATATTTTCTTTGCCCTATT-TTTTTAAAAATCA
192 TAAATGACATTGATGATTTTTTTTGCATGGAAATCTTTTCTTTGCCCAATTATCATT-AAAATCA
38929 AAGTTCATCCCTTGAAT-AGGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTTAAGATTG
256 AAGTTCATCCCTTGAATAAGG-CAAGCATCGATTCTCGT-ATAGTCTCCATTCTTTTTAAGATTG
* * *
38993 GGAAGCCAAAACACATTGCCTTCGTTAGGATACTTGACATTGATGCTTT-ATGTCTCAAGAAAAG
319 GGAAGCCAAAACACATTGCCTTTGTTAGGATACATGACATTGATGCTTTGGTGTCTCAAGAAAAG
* * * **
39057 CTTTTCTTCCCACCGTTTTTGAGAGAATCAAAGTTTGTCTCTTAAATAAGGCAAACATGGTTGCT
384 CTTTTCTTCTCGCCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGGCAAACATGAATGCT
* * * *
39122 CATGCTAATTCCCC-TTCTTTTC-TGGACTAGGCATCATAAATGAAGTTTTCTTATTCGGATACA
449 CATGCTAA-TCCCCATTCTTTTCAT-GATTAGGCATCATAAA-CAAGTCTTC--ATTAGGATACA
* * * *
39185 TGATATTGATATTTTGGTTTCACAAGAAAGGCATTTTTTTCAACAATATTTGTAAAGTTTAGGTT
509 TGATATTGATATTTTGGTTTCACAAGAAAGGCATTTTTTCCACCAAT-TTTGTAAAGTCTAAGTT
39250 TGTGCCTCAAATGCA-ACAAACATGGATTCTACTAATGATCTTCATTCATTTTGT
573 TGTGCCTCAAATG-AGACAAACATGGATTCTACTAATGATCTTCATTCATTTTGT
* * *
39304 GATTAGGCACTATAAACACATTCTCCTCATTAGGACACACGTTATTGACGCTTCGTTTCATAGCC
1 GATTAGGCACTATAAACACATTCTCCTCATTAGGATACACGATATTGATGCTTCGTTTCATAG-C
* * * * *
39369 AAGGATTTCTTCCCACCAATTGTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACAGGGAT
65 AAAGCTTTCTTTCC-CCAATTGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGAT
*
39434 TCTAGTAA-AGATCTTCATTCTTTTTGTGATAAGGCACTATAAACACATTCTCCTCATTAGGATA
129 TCTAGTAATAGATCTACATTCTTTTTGTGATAAGGCACTATAAACACATTCTCCTCATTAGGATA
*
39498 AATGACATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCAATTATCATTAAAATGAAA
194 AATGACATTGATGATTTT-TTTTGCATGGAAATCTTTTCTTTGCCCAATTATCATTAAAATCAAA
* * *
39563 GTTCATCCCTTGAATAAGGCAAGCGTTGATTCTCATAGTAGTC-CCATTCTTTTTAAGATTGGGA
258 GTTCATCCCTTGAATAAGGCAAGCATCGATTCTCGTA-TAGTCTCCATTCTTTTTAAGATTGGGA
* * *
39627 AGCTAAAACACATTGCCTTTGTTAGGATACACGACATTGATGCTTTGGGGTCTCAAGAAAAGCTT
322 AGCCAAAACACATTGCCTTTGTTAGGATACATGACATTGATGCTTTGGTGTCTCAAGAAAAGCTT
* ** * * *
39692 TTCTGCTCGTGGTTTTTTATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCAT
387 TTCTTCTCGCCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGGCAAACATGAATGCTCAT
* * * *
39757 CCTAATCCCCATTCTTTTCATTATTAGGC-CCTATAAACATAGTCTTCATTAGGATACACGATAT
452 GCTAATCCCCATTCTTTTCATGATTAGGCATC-ATAAACA-AGTCTTCATTAGGATACATGATAT
** ** * * *
39821 TGATGCTTTGGTTTTGCAACAAAGG-GTTTCTTCCCACCAATTGTTGTAAAGTCTAAGTTTGTGC
515 TGATATTTTGGTTTCACAAGAAAGGCATTT-TTTCCACCAATT-TTGTAAAGTCTAAGTTTGTGC
* * * *
39885 CTCAAATGAGACAAACAGGGATTCTAGTAAAGATCTTCATTCTTTTTGT
578 CTCAAATGAGACAAACATGGATTCTACTAATGATCTTCATTCATTTTGT
*
39934 GATAAGGCACTATAAACACATTCTCCTCATTAGGATA
1 GATTAGGCACTATAAACACATTCTCCTCATTAGGATA
39971 AATGACATTG
Statistics
Matches: 2992, Mismatches: 639, Indels: 399
0.74 0.16 0.10
Matches are distributed among these distances:
625 47 0.02
626 28 0.01
627 182 0.06
629 6 0.00
630 180 0.06
631 369 0.12
632 790 0.26
633 525 0.18
634 633 0.21
635 169 0.06
636 54 0.02
637 9 0.00
ACGTcount: A:0.30, C:0.18, G:0.16, T:0.36
Consensus pattern (626 bp):
GATTAGGCACTATAAACACATTCTCCTCATTAGGATACACGATATTGATGCTTCGTTTCATAGCA
AAGCTTTCTTTCCCCAATTGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTC
TAGTAATAGATCTACATTCTTTTTGTGATAAGGCACTATAAACACATTCTCCTCATTAGGATAAA
TGACATTGATGATTTTTTTTGCATGGAAATCTTTTCTTTGCCCAATTATCATTAAAATCAAAGTT
CATCCCTTGAATAAGGCAAGCATCGATTCTCGTATAGTCTCCATTCTTTTTAAGATTGGGAAGCC
AAAACACATTGCCTTTGTTAGGATACATGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCT
TCTCGCCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGGCAAACATGAATGCTCATGCTA
ATCCCCATTCTTTTCATGATTAGGCATCATAAACAAGTCTTCATTAGGATACATGATATTGATAT
TTTGGTTTCACAAGAAAGGCATTTTTTCCACCAATTTTGTAAAGTCTAAGTTTGTGCCTCAAATG
AGACAAACATGGATTCTACTAATGATCTTCATTCATTTTGT
Found at i:40626 original size:477 final size:476
Alignment explanation
Indices: 39369--41373 Score: 2526
Period size: 477 Copynumber: 4.3 Consensus size: 476
39359 TTTCATAGCC
* *
39369 AAGGATTTCTTCCCACCAATTGTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACAGGGAT
1 AAGGCTTTCTTCCCACCAATTGTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATGGAT
39434 TCTAGTAAAGATCTTCATTCTTTTTGTGATAAGGCACTATAAACACATTCTCCTCATTAGGATAA
66 TCTAGTAAAGATCTTCATTCTTTTTGTGATAAGGCACTATAAACACATTCTCCTCATTAGGATAA
* *
39499 ATGACATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCAATTATCATTAAAATGAAAG
131 ATGACATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCAATTATCCTTAAAATCAAAG
* * * * *
39564 TTCATCCCTTGAATAAGGCAAGCGTTGATTCTCATAGTAGTC-CCATTCTTTTTAAGATTGGGAA
196 TTCATCCATTGAATAAGACAAGCATCGATTCTCATAATAGTCTCCATTCTTTTTAAGATTGGGAA
* * *
39628 GCTAAAACACATTGCCTTTGTTAGGATACACGACATTGATGCTTTGGGGTCTCAAGAAAAGCTTT
261 GCCAAAACACATTGCCTTCGTTAGGATACACGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTT
* * *** * *
39693 TCTGCTCGTGGTTTTTTATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATC
326 TCTTCTAGCCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGGCAAACATGAATACTCATC
* *
39758 CTAATCCCCATTCTTTTCATTATTAGGCC-CTATAAACATAGTC-T-TCATTAGGATACACGATA
391 CTAATCCCCATTCTTTTCATTATTA-GCCACTATAAACAAAGTCTTCTCATTAGGATACATGATA
* *
39820 TTGATGCTTTGGTTTTGCAACA
455 TTGATACTTTGGTTTCGCAACA
* *
39842 AAGGGTTTCTTCCCACCAATTGTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACAGGGAT
1 AAGGCTTTCTTCCCACCAATTGTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATGGAT
39907 TCTAGTAAAGATCTTCATTCTTTTTGTGATAAGGCACTATAAACACATTCTCCTCATTAGGATAA
66 TCTAGTAAAGATCTTCATTCTTTTTGTGATAAGGCACTATAAACACATTCTCCTCATTAGGATAA
* * *
39972 ATGACATTGATGATTTTCTTTTCCTTGGAAATCTTTTCTTTGCCCAATTATCCTTAAAATCAATG
131 ATGACATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCAATTATCCTTAAAATCAAAG
40037 TTCAT-CACTTGAATAAGA-AATGCATCGATTCTCATAATAGTCTCCATTCTTTTTAAGATTGGG
196 TTCATCCA-TTGAATAAGACAA-GCATCGATTCTCATAATAGTCTCCATTCTTTTTAAGATTGGG
* * *
40100 AAGCCAGAACACATTGCCTTTGTTAGGATACACGACATTGATTCTTTGGTGTCTCAAGAAAAGCT
259 AAGCCAAAACACATTGCCTTCGTTAGGATACACGACATTGATGCTTTGGTGTCTCAAGAAAAGCT
*
40165 TTTCTTCTAGCCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGGCAAACATAAATACTCA
324 TTTCTTCTAGCCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGGCAAACATGAATACTCA
*
40230 TCCTAATCCCCATTCTTTTCATTATTAGCCACTATGAACAAAGTCTTCTCATTAGGATACATGAT
389 TCCTAATCCCCATTCTTTTCATTATTAGCCACTATAAACAAAGTCTTCTCATTAGGATACATGAT
* * *
40295 GTTGATGCTTTGGTTTCGGAACA
454 ATTGATACTTTGGTTTCGCAACA
* *** * *
40318 AAGGCTTTCTTCCCACCAATTGTTGTAAAGTCGAAGTCCATGCGTCAAATGAGACAAACATTGAT
1 AAGGCTTTCTTCCCACCAATTGTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATGGAT
* * * * * * *
40383 TTTAGTGATGATCTTCATTCTTTCTGTGATGAGGCACTAGAAACACATTCTCTTCATTAGGATAA
66 TCTAGTAAAGATCTTCATTCTTTTTGTGATAAGGCACTATAAACACATTCTCCTCATTAGGATAA
* * *
40448 ATGACAGTGATGGTTTTTTTTTTGCATGGAAATCTTTTCTTTGCCCAATTATCCTTAAAATCAAA
131 ATGACATTGAT-GATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCAATTATCCTTAAAATCAAA
* * *
40513 GTTCATCCATTGAATAGGACAAGCATCGATTCCCGTAATAGTCTCCATTCTTTTTAAGATTGGGA
195 GTTCATCCATTGAATAAGACAAGCATCGATTCTCATAATAGTCTCCATTCTTTTTAAGATTGGGA
** *
40578 AGCCAAAACACATTGCCTTCGTTAGGATACTTGACATTGATGCTTTGGTGTCTTAAGAAAAGCTT
260 AGCCAAAACACATTGCCTTCGTTAGGATACACGACATTGATGCTTTGGTGTCTCAAGAAAAGCTT
* * *
40643 TTCTTATCA-CCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAT-AGGATAAACATGAATACTC
325 TTCTTCT-AGCCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGG-CAAACATGAATACTC
* ** * * * * *
40706 A-CACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATATAGG
388 ATC-CTAATCCCCATTCTTTTCATTATTAGCCACTATAAACAAAGTCTTCTCATTAGGATACATG
* *
40770 ATATTGATACTTTGGTTTCACAACG
452 ATATTGATACTTTGGTTTCGCAACA
*** * ** *
40795 AAGGCTTTCTTCTTTCCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGGCAAACATGGAT
1 AAGGCTTTCTTCCCACCAATTGTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATGGAT
* *
40860 TCTTGTAAAGATCTTCATTCTTTTTTTGATAAGGCACTAT--A-A-A-------C----------
66 TCTAGTAAAGATCTTCATTCTTTTTGTGATAAGGCACTATAAACACATTCTCCTCATTAGGATAA
* * *
40904 ---ACATTGATGATTTTGTTTTGCATCGAAATCTTTTCTTTGCGCAATTATCCTTAAAATCAAAG
131 ATGACATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCAATTATCCTTAAAATCAAAG
* * * * * * *
40966 TTCATCCCTTAAATAAGACAAGCATAGATTCTCGTAACAGTCTCCATT-TTTTCAAGATTAGGAA
196 TTCATCCATTGAATAAGACAAGCATCGATTCTCATAATAGTCTCCATTCTTTTTAAGATTGGGAA
* * * * *
41030 GCCAAGACGCATT-CACTTCATTAGGATACATGACATTGATGCTTT-ATGTCTCAAGAAAAGCTT
261 GCCAAAACACATTGC-CTTCGTTAGGATACACGACATTGATGCTTTGGTGTCTCAAGAAAAGCTT
** * * *
41093 TTCTTCCCGCCATTTTTGATAAAATCATAGTTTGTCTCTTAAATAAGGCAAACATGAATGCTCAT
325 TTCTTCTAGCCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGGCAAACATGAATACTCAT
* * ** *
41158 GCTAATCCCCATTCTTTT--TTGGATTAGGCA-TCATAAATGAAGTTTTCTCATTAGGATACATG
390 CCTAATCCCCATTCTTTTCATT--ATTAGCCACT-ATAAACAAAGTCTTCTCATTAGGATACATG
* * * ***
41220 ATATTAATATTTTGGTTTCACGTGA
452 ATATTGATACTTTGGTTTCGCAACA
** * * *
41245 AAGGCATTT-TTTTCACCAATAT-TTGTAAAGTTTAAGTTTGTGCCTCGAATGCGACAAACATGG
1 AAGGC-TTTCTTCCCACCAAT-TGTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATGG
* * * *
41308 ATTCTACTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGAT
64 ATTCTAGTAAAGATCTTCATTCTTTTTGTGATAAGGCACTATAAACACATTCTCCTCATTAGGAT
41373 A
129 A
41374 CACGTTATTG
Statistics
Matches: 1339, Mismatches: 152, Indels: 85
0.85 0.10 0.05
Matches are distributed among these distances:
450 220 0.16
451 60 0.04
452 93 0.07
453 8 0.01
454 1 0.00
461 1 0.00
466 1 0.00
472 3 0.00
473 225 0.17
474 178 0.13
475 2 0.00
476 165 0.12
477 377 0.28
478 5 0.00
ACGTcount: A:0.30, C:0.18, G:0.15, T:0.36
Consensus pattern (476 bp):
AAGGCTTTCTTCCCACCAATTGTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATGGAT
TCTAGTAAAGATCTTCATTCTTTTTGTGATAAGGCACTATAAACACATTCTCCTCATTAGGATAA
ATGACATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCAATTATCCTTAAAATCAAAG
TTCATCCATTGAATAAGACAAGCATCGATTCTCATAATAGTCTCCATTCTTTTTAAGATTGGGAA
GCCAAAACACATTGCCTTCGTTAGGATACACGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTT
TCTTCTAGCCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGGCAAACATGAATACTCATC
CTAATCCCCATTCTTTTCATTATTAGCCACTATAAACAAAGTCTTCTCATTAGGATACATGATAT
TGATACTTTGGTTTCGCAACA
Found at i:41310 original size:450 final size:452
Alignment explanation
Indices: 40462--41358 Score: 1225
Period size: 450 Copynumber: 2.0 Consensus size: 452
40452 CAGTGATGGT
* * *
40462 TTTTTTTTTGCATGGAAATCTTTTCTTTGCCCAATTATCCTTAAAATCAAAGTTCATCCATTGAA
1 TTTTGTTTTGCATCGAAATCTTTTCTTTGCCCAATTATCCTTAAAATCAAAGTTCATCCATTAAA
* * * * *
40527 TAGGACAAGCATCGATTCCCGTAATAGTCTCCATTCTTTTTAAGATTGGGAAGCCAAAACACATT
66 TAAGACAAGCATAGATTCCCGTAACAGTCTCCATTCTTTTCAAGATTAGGAAGCCAAAACACATT
* * * * * *
40592 GCCTTCGTTAGGATACTTGACATTGATGCTTTGGTGTCTTAAGAAAAGCTTTTCTTATCACCGTT
131 GCCTTCATTAGGATACATGACATTGATGCTTTGATGTCTCAAGAAAAGCTTTTCTTACCACCATT
* *
40657 TTTGATAGAATCAAAGTTTGTCTCTTAAATAGGATAAACATGAATACTCACACTAATCCCCATTC
196 TTTGATAAAATCAAAGTTTGTCTCTTAAATAGGACAAACATGAATACTCACACTAATCCCCATTC
* *
40722 TTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATATAGGATATTGATACTTTGGTT
261 TTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACAGGATATTAATACTTTGGTT
* * *
40787 TCACAACGAAGGCTTTCTTCTTTCCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGGCAA
326 TCACAACGAAGGCTTTCTTCTTACCAATATTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAA
** * *
40852 ACATGGATTCTTGTAAAGATCTTCATTCTTTTTTTGATAAGGCACTATAAACACATTGATGA
391 ACATGGATTCTACTAAAGATCTTCATTCATTTTGTGATAAGGCACTATAAACACATTGATGA
* *
40914 TTTTGTTTTGCATCGAAATCTTTTCTTTGCGCAATTATCCTTAAAATCAAAGTTCATCCCTTAAA
1 TTTTGTTTTGCATCGAAATCTTTTCTTTGCCCAATTATCCTTAAAATCAAAGTTCATCCATTAAA
* * *
40979 TAAGACAAGCATAGATTCTCGTAACAGTCTCCATT-TTTTCAAGATTAGGAAGCCAAGACGCATT
66 TAAGACAAGCATAGATTCCCGTAACAGTCTCCATTCTTTTCAAGATTAGGAAGCCAAAACACATT
* *
41043 -CACTTCATTAGGATACATGACATTGATGCTTT-ATGTCTCAAGAAAAGCTTTTCTTCCCGCCAT
131 GC-CTTCATTAGGATACATGACATTGATGCTTTGATGTCTCAAGAAAAGCTTTTCTTACCACCAT
* * **
41106 TTTTGATAAAATCATAGTTTGTCTCTTAAATAAGG-CAAACATGAATGCTCATGCTAATCCCCAT
195 TTTTGATAAAATCAAAGTTTGTCTCTTAAAT-AGGACAAACATGAATACTCACACTAATCCCCAT
* * * * * *
41170 TCTTTTTTGGATTAGGCATCATAAATGA-AGTTTTCTCATTAGGATACATGATATTAATATTTTG
259 TCTTTTTAGGATTAGGCACCATAAA-CATAGTCTTCTCATTAGGATACAGGATATTAATACTTTG
** * ** *
41234 GTTTCAC-GTGAAAGGCATTT-TT-TTCACCAATATTTGTAAAGTTTAAGTTTGTGCCTCGAATG
323 GTTTCACAACG-AAGGC-TTTCTTCTT-ACCAATATTTGTAAAGTCTAAGTTCATGCCTCAAATG
* * *
41296 CGACAAACATGGATTCTACTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATT
385 AGACAAACATGGATTCTACTAAAGATCTTCATTCATTTTGTGATAAGGCACTATAAACACATT
41359 CTCCTCATTA
Statistics
Matches: 388, Mismatches: 51, Indels: 14
0.86 0.11 0.03
Matches are distributed among these distances:
449 3 0.01
450 234 0.60
451 60 0.15
452 91 0.23
ACGTcount: A:0.30, C:0.18, G:0.15, T:0.37
Consensus pattern (452 bp):
TTTTGTTTTGCATCGAAATCTTTTCTTTGCCCAATTATCCTTAAAATCAAAGTTCATCCATTAAA
TAAGACAAGCATAGATTCCCGTAACAGTCTCCATTCTTTTCAAGATTAGGAAGCCAAAACACATT
GCCTTCATTAGGATACATGACATTGATGCTTTGATGTCTCAAGAAAAGCTTTTCTTACCACCATT
TTTGATAAAATCAAAGTTTGTCTCTTAAATAGGACAAACATGAATACTCACACTAATCCCCATTC
TTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACAGGATATTAATACTTTGGTT
TCACAACGAAGGCTTTCTTCTTACCAATATTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAA
ACATGGATTCTACTAAAGATCTTCATTCATTTTGTGATAAGGCACTATAAACACATTGATGA
Found at i:41458 original size:157 final size:157
Alignment explanation
Indices: 41204--42158 Score: 612
Period size: 157 Copynumber: 6.1 Consensus size: 157
41194 ATGAAGTTTT
* ** * * *
41204 CTCATTAGGATACATGATATTAATATTTTGGTTTCAC-GTGAAAGGCATTTT-TT-TCACCAATA
1 CTCATTAGGATACATGATATTGAT-GCTTCGTTTCACAG-CAAAGGC-TTTTCTTCCCACCAAT-
* * * * *
41266 TTTGTAAAGTTTAAGTTTGTGCCTCGAATGCGACAAACATGGATTCTACTAATGATCTTCATTCA
62 TTTGTAAAGTCTAAGTTCGTCCCTCAAATGAGACAAACATGGATTCTACTAATGATCTTCATTCA
41331 TTTTGTGATTAGGCACTATAAACACATTCTC
127 TTTTGTGATTAGGCACTATAAACACATTCTC
* * * *
41362 CTCATTAGGATACACGTTATTGATGCTTCGTTTCATAGCCAAGGC-TTTCTTCCCACCAATTGTT
1 CTCATTAGGATACATGATATTGATGCTTCGTTTCACAGCAAAGGCTTTTCTTCCCACCAATT-TT
* * * *
41426 GTAAAGTCTAAGTTCGTCCCTCAAATGAGACAAACATAGATTCTAGTAACGATCTTCATTCTTTT
65 GTAAAGTCTAAGTTCGTCCCTCAAATGAGACAAACATGGATTCTACTAATGATCTTCATTCATTT
*
41491 TGTGATAAGGCACTAT--ACACATTCTC
130 TGTGATTAGGCACTATAAACACATTCTC
* * * ** * * * *
41517 CTCATTAGGATAAATGACATTGATGGTTTTTTTTACATGGAAA-TCTTTTCTTTGCC-CC-ATTT
1 CTCATTAGGATACATGATATTGATGCTTCGTTTCACA-GCAAAGGCTTTTC-TTCCCACCAATTT
* * * * * * * * * * *
41579 TCCTGAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCT-CATAA-CAGCCTCCATT
64 T-GT-AAAGTCTAAGTTCGTCCCTCAAATGAGACAAACATGGATTCTAC-TAATGA-TCTTCATT
** * *
41642 -ATTTTCAAGATTGGGAAGGC-A-AAACACATTGC-C
125 CATTTT-GTGATTAGGCA--CTATAAACACATT-CTC
* * * * * * * **
41675 TTCATTAGGATACATGACATTGATGCTTTGGTGT-AGCAGGAAAAGCTTTTCTTCCCATCGTTTT
1 CTCATTAGGATACATGATATTGATGC-TTCGTTTCA-CAGCAAAGGCTTTTCTTCCCACCAATTT
* * * * * * * * * * **
41739 TGATAGAA-TCAAAGTTTGTCTCTTAAA-AAGGCAAACATGAATGCT-CATACTAATCCCCATTC
64 TG-TA-AAGTCTAAGTTCGTCCCTCAAATGAGACAAACATGGATTCTAC-TAATGATCTTCATTC
* * * *
41801 -TTTTAG-GATTTGGCA-TCATAAATGA-AGTCTT
126 ATTTT-GTGATTAGGCACT-ATAAA-CACATTCTC
** * * ** *
41832 CTCATTAGGATACATGATATTGATATTTTGGTTTCGCAAAAAAGGCATTT-TTCCCACCAATATT
1 CTCATTAGGATACATGATATTGAT-GCTTCGTTTCACAGCAAAGGCTTTTCTTCCCACCAAT-TT
* * * *
41896 TGTAAAGTCTAAGTTTGTGCCTCACATGTGACAAACATGGATTCTACTAATGATCTTCATTCATT
64 TGTAAAGTCTAAGTTCGTCCCTCAAATGAGACAAACATGGATTCTACTAATGATCTTCATTCATT
41961 TTGTGATTAGGCACTATAAACA-ATTCTC
129 TTGTGATTAGGCACTATAAACACATTCTC
* * * * * *
41989 CTCATTAGGATAGACGATATTGATGCTTCGGTTTCGCAACAAAGGC-TTTGTTCCCAACAATTTT
1 CTCATTAGGATACATGATATTGATGCTTC-GTTTCACAGCAAAGGCTTTTCTTCCCACCAA-TTT
* * * * * *
42053 TGTAAAGTTTAAGTTCGTGCCTCAAATGAGACAAACGTGGATTCTAGTAATGATGTTCATTCTTT
64 TGTAAAGTCTAAGTTCGTCCCTCAAATGAGACAAACATGGATTCTACTAATGATCTTCATTCATT
* * * *
42118 TTGTGATAAGGAACTATAAGCGCATTCTC
129 TTGTGATTAGGCACTATAAACACATTCTC
*
42147 CGCATTAGGATA
1 CTCATTAGGATA
42159 AATGCCTCAA
Statistics
Matches: 621, Mismatches: 132, Indels: 88
0.74 0.16 0.10
Matches are distributed among these distances:
154 2 0.00
155 53 0.09
156 93 0.15
157 305 0.49
158 128 0.21
159 33 0.05
160 7 0.01
ACGTcount: A:0.30, C:0.19, G:0.16, T:0.36
Consensus pattern (157 bp):
CTCATTAGGATACATGATATTGATGCTTCGTTTCACAGCAAAGGCTTTTCTTCCCACCAATTTTG
TAAAGTCTAAGTTCGTCCCTCAAATGAGACAAACATGGATTCTACTAATGATCTTCATTCATTTT
GTGATTAGGCACTATAAACACATTCTC
Found at i:42101 original size:628 final size:631
Alignment explanation
Indices: 40904--42162 Score: 1931
Period size: 628 Copynumber: 2.0 Consensus size: 631
40894 CACTATAAAC
* * *
40904 ACATTGATGATTTTGTTTTGCATCGAAATCTTTTCTTTGCGCAATTATCCTTAAAATCAAAGTTC
1 ACATTGATGATTTTGTTTTACATCGAAATCTTTTCTTTGCCCAATTATCCTGAAAATCAAAGTTC
* *
40969 ATCCCTTAAATAAGACAAGCATAGATTCTCGTAACAGTCTCCATTTTTTCAAGATTAGGAAGCCA
66 ATCCCTTAAATAAGACAAGCATAGATTCTCATAACAGCCTCCATTTTTTCAAGATTAGGAAGCCA
* * **
41034 AGACGCATTCACTTCATTAGGATACATGACATTGATGCTTTATGTCTCAAGAAAAGCTTTTCTTC
131 AAACACATTCACTTCATTAGGATACATGACATTGATGCTTTATGTAGCAAGAAAAGCTTTTCTTC
* * *
41099 CCGCCATTTTTGATAAAATCATAGTTTGTCTCTTAAATAAGGCAAACATGAATGCTCATGCTAAT
196 CCACCATTTTTGATAAAATCAAAGTTTGTCTCTTAAATAAGGCAAACATGAATGCTCATACTAAT
* *
41164 CCCCATTCTTTTTTGGATTAGGCATCATAAATGAAGTTTTCTCATTAGGATACATGATATTAATA
261 CCCCATTCTTTTTAGGATTAGGCATCATAAATGAAGTCTTCTCATTAGGATACATGATATTAATA
*** ** *
41229 TTTTGGTTTCACGTGAAAGGCATTTTTTTCACCAATATTTGTAAAGTTTAAGTTTGTGCCTCGAA
326 TTTTGGTTTCACAAAAAAGGCATTTTTCCCACCAATATTTGTAAAGTCTAAGTTTGTGCCTCGAA
41294 TGCGACAAACATGGATTCTACTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATT
391 TGCGACAAACATGGATTCTACTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATT
* * * * *
41359 CTCCTCATTAGGATACACGTTATTGATGCTTCGTTTCATAGCCAAGGCTTTCTTCCCACCAATTG
456 CTCCTCATTAGGATACACGATATTGATGCTTCGTTTCACAACAAAGGCTTTCTTCCCAACAATTG
41424 TTGTAAAGTCTAAGTTCGTCCCTCAAATGAGACAAACATAGATTCTAGTAACGATCTTCATTCTT
521 TTGTAAAGTCTAAGTTCGTCCCTCAAATGAGACAAACATAGATTCTAGTAACGATCTTCATTCTT
* *
41489 TTTGTGATAAGGCACTAT-A-CACATTCTCCTCATTAGGATAAATG
586 TTTGTGATAAGGAACTATAAGCACATTCTCCGCATTAGGATAAATG
* * * *
41533 ACATTGATGGTTTT-TTTTACATGGAAATCTTTTCTTTGCCCCATTTTCCTGAAAATCAAAGTTC
1 ACATTGATGATTTTGTTTTACATCGAAATCTTTTCTTTGCCCAATTATCCTGAAAATCAAAGTTC
* * *
41597 ATCCCTTAAATAAGACAAGCATCGATTCTCATAACAGCCTCCATTATTTTCAAGATTGGGAAGGC
66 ATCCCTTAAATAAGACAAGCATAGATTCTCATAACAGCCTCCATT-TTTTCAAGATTAGGAAGCC
* *
41662 AAAACACATTGC-CTTCATTAGGATACATGACATTGATGCTTTGGTGTAGCAGGAAAAGCTTTTC
130 AAAACACATT-CACTTCATTAGGATACATGACATTGATGCTTT-ATGTAGCAAGAAAAGCTTTTC
* * *
41726 TTCCCATCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAA-AAGGCAAACATGAATGCTCATACT
193 TTCCCACCATTTTTGATAAAATCAAAGTTTGTCTCTTAAATAAGGCAAACATGAATGCTCATACT
* *
41790 AATCCCCATTC-TTTTAGGATTTGGCATCATAAATGAAGTCTTCTCATTAGGATACATGATATTG
258 AATCCCCATTCTTTTTAGGATTAGGCATCATAAATGAAGTCTTCTCATTAGGATACATGATATTA
*
41854 ATATTTTGGTTTCGCAAAAAAGGCATTTTTCCCACCAATATTTGTAAAGTCTAAGTTTGTGCCTC
323 ATATTTTGGTTTCACAAAAAAGGCATTTTTCCCACCAATATTTGTAAAGTCTAAGTTTGTGCCTC
*
41919 -ACATGTGACAAACATGGATTCTACTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACA
388 GA-ATGCGACAAACATGGATTCTACTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACA
* * *
41983 -ATTCTCCTCATTAGGATAGACGATATTGATGCTTCGGTTTCGCAACAAAGGCTTTGTTCCCAAC
452 CATTCTCCTCATTAGGATACACGATATTGATGCTTC-GTTTCACAACAAAGGCTTTCTTCCCAAC
* * * * * * *
42047 AATTTTTGTAAAGTTTAAGTTCGTGCCTCAAATGAGACAAACGTGGATTCTAGTAATGATGTTCA
516 AATTGTTGTAAAGTCTAAGTTCGTCCCTCAAATGAGACAAACATAGATTCTAGTAACGATCTTCA
*
42112 TTCTTTTTGTGATAAGGAACTATAAGCGCATTCTCCGCATTAGGATAAATG
581 TTCTTTTTGTGATAAGGAACTATAAGCACATTCTCCGCATTAGGATAAATG
42163 CCTCAAATGC
Statistics
Matches: 569, Mismatches: 54, Indels: 13
0.89 0.08 0.02
Matches are distributed among these distances:
627 34 0.06
628 356 0.63
629 103 0.18
630 76 0.13
ACGTcount: A:0.30, C:0.19, G:0.16, T:0.36
Consensus pattern (631 bp):
ACATTGATGATTTTGTTTTACATCGAAATCTTTTCTTTGCCCAATTATCCTGAAAATCAAAGTTC
ATCCCTTAAATAAGACAAGCATAGATTCTCATAACAGCCTCCATTTTTTCAAGATTAGGAAGCCA
AAACACATTCACTTCATTAGGATACATGACATTGATGCTTTATGTAGCAAGAAAAGCTTTTCTTC
CCACCATTTTTGATAAAATCAAAGTTTGTCTCTTAAATAAGGCAAACATGAATGCTCATACTAAT
CCCCATTCTTTTTAGGATTAGGCATCATAAATGAAGTCTTCTCATTAGGATACATGATATTAATA
TTTTGGTTTCACAAAAAAGGCATTTTTCCCACCAATATTTGTAAAGTCTAAGTTTGTGCCTCGAA
TGCGACAAACATGGATTCTACTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATT
CTCCTCATTAGGATACACGATATTGATGCTTCGTTTCACAACAAAGGCTTTCTTCCCAACAATTG
TTGTAAAGTCTAAGTTCGTCCCTCAAATGAGACAAACATAGATTCTAGTAACGATCTTCATTCTT
TTTGTGATAAGGAACTATAAGCACATTCTCCGCATTAGGATAAATG
Found at i:42225 original size:91 final size:91
Alignment explanation
Indices: 42070--42249 Score: 238
Period size: 91 Copynumber: 2.0 Consensus size: 91
42060 TTTAAGTTCG
* * *
42070 TGCCTCAAATGAGACAAACGTGGATTCTAGTAATGATGTTCATTCTTTTTGTGATAAGGAACTAT
1 TGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATAAGGAACTAT
* * *
42135 AAGCGCATTCTCCGCATTAGGATAAA
66 AAACACATTCTCCGCATTAAGATAAA
* * *
42161 TGCCTCAAATGCA-ACAAACATGGATTCT-GCTAGTGATCTTCATTCATTTTGTGATTAGGCACT
1 TGCCTCAAATG-AGACAAACATGGATTCTAG-TAATGATCTTCATTCATTTTGTGATAAGGAACT
*
42224 ATAAACACATTCTCCTCATTAAGATA
64 ATAAACACATTCTCCGCATTAAGATA
42250 CACGATATTG
Statistics
Matches: 77, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
90 1 0.01
91 75 0.97
92 1 0.01
ACGTcount: A:0.32, C:0.19, G:0.17, T:0.33
Consensus pattern (91 bp):
TGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATAAGGAACTAT
AAACACATTCTCCGCATTAAGATAAA
Found at i:42362 original size:248 final size:248
Alignment explanation
Indices: 41926--42376 Score: 760
Period size: 248 Copynumber: 1.8 Consensus size: 248
41916 CTCACATGTG
41926 ACAAACATGGATTCTACTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACAATTCTCCT
1 ACAAACATGGATTCTACTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACAATTCTCCT
* * * *
41991 CATTAGGATAGACGATATTGATGCTTCGGTTTCGCAACAAAGGCTTTGTTCCCAACAATTTTTGT
66 CATTAAGATACACGATATTGATGCTTCAGTTTCGCAACAAAGGCTTTCTTCCCAACAATTTTTGT
* * * * * *
42056 AAAGTTTAAGTTCGTGCCTCAAATGAGACAAACGTGGATTCTAGTAATGATGTTCATTCTTTTTG
131 AAAGTCTAAGTTCGTACCTCAAAAGAGACAAACATGGATTCTAGTAATAATCTTCATTCTTTTTG
42121 TGATAAGGAACTATAAGCGCATTCTCCGCATTAGGATAAATGCCTCAAATGCA
196 TGATAAGGAACTATAAGCGCATTCTCCGCATTAGGATAAATGCCTCAAATGCA
* *
42174 ACAAACATGGATTCTGCTAGTGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCC
1 ACAAACATGGATTCTACTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACA-ATTCTCC
*
42239 TCATTAAGATACACGATATTGATGCTTCAGTTTCGCAACAAAGGCTTTCTTCCCACCAA-TTTTG
65 TCATTAAGATACACGATATTGATGCTTCAGTTTCGCAACAAAGGCTTTCTTCCCAACAATTTTTG
*
42303 TAAAGTCTAAGTTCGTACCTCAAAAGAGACAAACATGGATTCTAGTATTAATCTTCATTCTTTTT
130 TAAAGTCTAAGTTCGTACCTCAAAAGAGACAAACATGGATTCTAGTAATAATCTTCATTCTTTTT
42368 GTGATAAGG
195 GTGATAAGG
42377 CGCTCTAAAT
Statistics
Matches: 188, Mismatches: 14, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
248 127 0.68
249 61 0.32
ACGTcount: A:0.31, C:0.19, G:0.16, T:0.34
Consensus pattern (248 bp):
ACAAACATGGATTCTACTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACAATTCTCCT
CATTAAGATACACGATATTGATGCTTCAGTTTCGCAACAAAGGCTTTCTTCCCAACAATTTTTGT
AAAGTCTAAGTTCGTACCTCAAAAGAGACAAACATGGATTCTAGTAATAATCTTCATTCTTTTTG
TGATAAGGAACTATAAGCGCATTCTCCGCATTAGGATAAATGCCTCAAATGCA
Found at i:43118 original size:20 final size:20
Alignment explanation
Indices: 43077--43114 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
43067 ATGTAAATGC
* *
43077 ATCGATACAATTTTTGATAT
1 ATCGATACAATATTTGAAAT
43097 ATCGATAC-ATATTTGAAA
1 ATCGATACAATATTTGAAA
43115 ATATAGCCGT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 8 0.50
20 8 0.50
ACGTcount: A:0.39, C:0.11, G:0.11, T:0.39
Consensus pattern (20 bp):
ATCGATACAATATTTGAAAT
Found at i:43181 original size:13 final size:13
Alignment explanation
Indices: 43163--43188 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
43153 TAATTTTTTA
43163 TGTATCGATACAT
1 TGTATCGATACAT
43176 TGTATCGATACAT
1 TGTATCGATACAT
43189 ACTTGGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:45289 original size:21 final size:20
Alignment explanation
Indices: 45260--45302 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
45250 GGCTAGTGTG
*
45260 GGGACTGCCCGGTTGCGACCT
1 GGGACTG-CCGGTCGCGACCT
*
45281 GGGAGTGCCGGTCGCGACCT
1 GGGACTGCCGGTCGCGACCT
45301 GG
1 GG
45303 TGGTGCTGCC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 14 0.70
21 6 0.30
ACGTcount: A:0.09, C:0.30, G:0.44, T:0.16
Consensus pattern (20 bp):
GGGACTGCCGGTCGCGACCT
Found at i:49459 original size:17 final size:17
Alignment explanation
Indices: 49437--49470 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
49427 CCTCTAAATT
49437 TACTTATTTTAGAGTTG
1 TACTTATTTTAGAGTTG
49454 TACTTATTTTAGAGTTG
1 TACTTATTTTAGAGTTG
49471 CACGTGTGGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.24, C:0.06, G:0.18, T:0.53
Consensus pattern (17 bp):
TACTTATTTTAGAGTTG
Found at i:51962 original size:13 final size:13
Alignment explanation
Indices: 51944--51969 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
51934 CAATTTTTTG
51944 TGTATCGATACAT
1 TGTATCGATACAT
51957 TGTATCGATACAT
1 TGTATCGATACAT
51970 ACTTGGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:51984 original size:32 final size:33
Alignment explanation
Indices: 51924--51987 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 33
51914 TACAAGCCAA
** *
51924 TGTATCGATACAATTTTTTGTGTATCGATACAT
1 TGTATCGATACAATACTTGGTGTATCGATACAT
51957 TGTATCGATAC-ATACTTGGTGTATCGATACA
1 TGTATCGATACAATACTTGGTGTATCGATACA
51988 AGTTTGGCTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 17 0.61
33 11 0.39
ACGTcount: A:0.28, C:0.14, G:0.17, T:0.41
Consensus pattern (33 bp):
TGTATCGATACAATACTTGGTGTATCGATACAT
Found at i:53117 original size:159 final size:158
Alignment explanation
Indices: 52461--53117 Score: 378
Period size: 159 Copynumber: 4.2 Consensus size: 158
52451 GTAACAGTCT
* * * *
52461 CCATTCTTTTCAAGATTAGGAAGCCA-AAACACATTGCTTTCACTAGGATACACGACATTGATGC
1 CCATTCTTTTCAGGATTAGGCA-CCATAAACACATTGCCTTCATTAGGATACACGACATTGATGC
* * * * * *
52525 TTGGGTGTCTCAAGAAAAGCTTTTCTTTCTACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAA
65 TTTGGTGTCTCAAGAAAAGCCTTTCTTCCCACCATTTTTTATA-AATCAAAGTTCGTCTCTT-AA
* *
52590 ATAAGACAAACATAAATACTCATACTAATTC
128 ATAAGACAAACATGAATACTCATACTAATCC
* * ** *
52621 CCATTCTTTTCAGAATTAGGCACCATAAACATAGTTTTC-TCATTAGGATACACGATATTGATGC
1 CCATTCTTTTCAGGATTAGGCACCATAAACACA-TTGCCTTCATTAGGATACACGACATTGATGC
* * * * * * *
52685 TTTGGT-T-TCATA-ACGAAGGCTTT-TTCCCAATCAATTGTTGTAAAGTCTAAGTTCGTGC-CT
65 TTTGGTGTCTCA-AGA-AAAGCCTTTCTTCCC-ACCATTTTTTATAAA-TCAAAGTTCGT-CTCT
* * * *
52745 TAAATAAGGCAAATATGGAT--TC-TAGTAATGGCC
125 TAAATAAGACAAACATGAATACTCATACTAAT--CC
* * * * * * * *
52778 TTCATTC-TTTCTGGGATAAGGCA-C-T----TC--T-CCTT-ATTAGGATAGAAGACATTAACG
1 -CCATTCTTTTC-AGGATTAGGCACCATAAACACATTGCCTTCATTAGGATACACGACATTGATG
* * * * * * * * * * *
52832 CTTT-TTCTTTGCATGGAAATCTTTTCTTTACC-CCATTTTCCTTA-AAATGAAAGTCCATCTCT
64 CTTTGGTGTCT-CAAGAAAAGCCTTTC-TTCCCACCATTTT--TTATAAATCAAAGTTCGTCTCT
* * * * * *
52894 TGAATAAGACAAGCATCG-ATTCTCCTAACT-GTCT
125 TAAATAAGACAAACAT-GAATACTCAT-ACTAATCC
* * * *
52928 CCATTCTTTTCAAGATTGGGAAACCA-AAACACATTGCCTTCATTAGGATACATGACATTGATGC
1 CCATTCTTTTCAGGATTAGG-CACCATAAACACATTGCCTTCATTAGGATACACGACATTGATGC
* *
52992 TTTGGTGTCTCAAGAAAAGCCTTTCTTCCCGCCATTTTTTATAGAATCAAAGTTTGTCTCTTAAA
65 TTTGGTGTCTCAAGAAAAGCCTTTCTTCCCACCATTTTTTATA-AATCAAAGTTCGTCTCTTAAA
* *
53057 TAAGATAAATATGAATACTCATACTAATCC
129 TAAGACAAACATGAATACTCATACTAATCC
*
53087 CCATTCTTTTTAGGATTAGGCACCATAAACA
1 CCATTCTTTTCAGGATTAGGCACCATAAACA
53118 TAGTCTTCTC
Statistics
Matches: 354, Mismatches: 98, Indels: 91
0.65 0.18 0.17
Matches are distributed among these distances:
147 1 0.00
148 24 0.07
149 45 0.13
150 12 0.03
151 9 0.03
152 2 0.01
153 2 0.01
155 7 0.02
156 3 0.01
157 10 0.03
158 54 0.15
159 126 0.36
160 57 0.16
161 2 0.01
ACGTcount: A:0.31, C:0.20, G:0.14, T:0.35
Consensus pattern (158 bp):
CCATTCTTTTCAGGATTAGGCACCATAAACACATTGCCTTCATTAGGATACACGACATTGATGCT
TTGGTGTCTCAAGAAAAGCCTTTCTTCCCACCATTTTTTATAAATCAAAGTTCGTCTCTTAAATA
AGACAAACATGAATACTCATACTAATCC
Found at i:54324 original size:477 final size:474
Alignment explanation
Indices: 53416--54546 Score: 1290
Period size: 477 Copynumber: 2.4 Consensus size: 474
53406 ATTGAATAGG
* * *
53416 ATACATGACATTGATGCTTTGGTGTCGT-AAGAAAAGATTTTC-GTCCCATCGTTTTTGGTAGAA
1 ATACATGACATTGATGCTTAGGTATC-TCAAGAAAAGATTTTCTG-CCCATCGTTTTTGATAGAA
* * * *
53479 TCAAAGTTTGTCTCTTAAATAAGACAAACATATTCACTCACACTAATCCCCAATCCTTTTAGGAT
64 TCAAAGTTTGTCTCTTAAATAAGACAAACATAAT-ACTCACACTAATCCTC-ATTCTTTTAAGAT
* * * ** * *
53544 TAGGCACCACAAACATAGTCTTTTCATTAGGATACAAGATATTGATGCTTTGGTTTCGCAACGAT
127 TAGGCACCACAAACATA-TCTTCTCATTAGGATACAAGATATTGATGCCTTAGTTTCAAAACAAA
* * *
53609 GGCTGTCGTCCCACCAATTTTTGAAAAGTCAAAGTTCATGCCTTAAATGAGAGAAACTTGGATTA
191 GGCTGTCGTCCCACCAATTTTTGAAAAGTCAAAGTTCATGCCTCAAATGAGACAAACATGGATTA
* * *
53674 TAGTGATGATCTTCATTCATTTTGTGGTTAGGAACAATAAACACATTCTCCTCATTAGGATAAAT
256 TAGTAATGATCTTCATTCATTTTGTGATAAGGAACAATAAACACATTCTCCTCATTAGGATAAAT
* * * * *
53739 GATATTGATGATTTTTTTTTGCATGGAAATTTTTTTCTTTGCCCAATTATCCTTAAAATCAAAGT
321 GACATTGATGATTTTATTTTGCATCGAAAATCTTTTCTTTGCCCAATTATCCTTAAAATCAAAGT
* * * * * * *
53804 TCATCTCGCGAATAAGACAAGCATCGATTCGCATAATAGTCTCCATTTTTTTCATGATTGGGAGG
386 TCATCTCCCGAATAAAACAAACATCGATTCGCATAACAGTCTCCATTCTTTTCAAGATTGGGAAG
* * *
53869 TCGAAACACATTGCCTTCACTAGG
451 CCAAAACACATTGCCTTCACTAGC
* * *
53893 ATAGA-GAACATTGATGCTTAGGTATCTCAAGAAAAGCTTTTCTGCCCGTCGTTTTTGATAGAAT
1 ATACATG-ACATTGATGCTTAGGTATCTCAAGAAAAGATTTTCTGCCCATCGTTTTTGATAGAAT
* * * *
53957 GAAAGTTTGTCTCTTAAATAAGCCAAATATGAATACTCATACTAATCCTCATTCTTTTCAAGATT
65 CAAAGTTTGTCTCTTAAATAAGACAAACAT-AATACTCACACTAATCCTCATTCTTTT-AAGATT
* * *
54022 AGGCACCATAAACAT-TCTTCTCATTAGGATACACGCTATTGATGCCTTAGTTTCAAAACAAAGG
128 AGGCACCACAAACATATCTTCTCATTAGGATACAAGATATTGATGCCTTAGTTTCAAAACAAAGG
* * * * * * *
54086 CTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGTATTCTA
193 CTGTCGTCCCACCAATTTTTGAAAAGTCAAAGTTCATGCCTCAAATGAGACAAACATGGATTATA
* * *
54151 GTAATGATCTTCATTCTTTTTGTGATAAGGCACTACTATAAGCACATTCT-CTGCATTAGGATAA
258 GTAATGATCTTCATTCATTTTGTGATAAGG-A--ACAATAAACACATTCTCCT-CATTAGGATAA
* *
54215 ATGACGTTGATGATTTTATTTTGCA-CGAAAATCTTTTCTTTGCCCAATTATCCTTAAAATCAAT
319 ATGACATTGATGATTTTATTTTGCATCGAAAATCTTTTCTTTGCCCAATTATCCTTAAAATCAAA
* * *
54279 GTTCATC-CCCTGAATAAAACAAACATTGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGG
384 GTTCATCTCCC-GAATAAAACAAACATCGATTCGCATAACAGTCTCCATTCTTTTCAAGATTGGG
* * *
54343 AAGCCAAAACACTTTGCCTTCATTATC
448 AAGCCAAAACACATTGCCTTCACTAGC
* * * * * *
54370 ATACATGACATTGATGCTCA--AAGTCTCAAGGAAAGGTTTTCTTCCCACCGTTTTTGATAGAAT
1 ATACATGACATTGATGCTTAGGTA-TCTCAAGAAAAGATTTTCTGCCCATCGTTTTTGATAGAAT
** * * * *
54433 CAAAGTTCATCTCTTAAATAAGACAAACATAAATACTCACAGTAATCCTGATTTTTTTTTTAGGA
65 CAAAGTTTGTCTCTTAAATAAGACAAACAT-AATACTCACACTAATCCTCA---TTCTTTTAAGA
* * ** * * *
54498 TTAGACATCGTAAACATAGTATTCTCATTAGGGTACGAGATATTGATGC
126 TTAGGCACCACAAACATA-TCTTCTCATTAGGATACAAGATATTGATGC
54547 TTTGGTGTTG
Statistics
Matches: 547, Mismatches: 90, Indels: 31
0.82 0.13 0.05
Matches are distributed among these distances:
475 122 0.22
476 89 0.16
477 237 0.43
478 68 0.12
479 6 0.01
480 25 0.05
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.35
Consensus pattern (474 bp):
ATACATGACATTGATGCTTAGGTATCTCAAGAAAAGATTTTCTGCCCATCGTTTTTGATAGAATC
AAAGTTTGTCTCTTAAATAAGACAAACATAATACTCACACTAATCCTCATTCTTTTAAGATTAGG
CACCACAAACATATCTTCTCATTAGGATACAAGATATTGATGCCTTAGTTTCAAAACAAAGGCTG
TCGTCCCACCAATTTTTGAAAAGTCAAAGTTCATGCCTCAAATGAGACAAACATGGATTATAGTA
ATGATCTTCATTCATTTTGTGATAAGGAACAATAAACACATTCTCCTCATTAGGATAAATGACAT
TGATGATTTTATTTTGCATCGAAAATCTTTTCTTTGCCCAATTATCCTTAAAATCAAAGTTCATC
TCCCGAATAAAACAAACATCGATTCGCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAA
ACACATTGCCTTCACTAGC
Found at i:54850 original size:158 final size:159
Alignment explanation
Indices: 54679--55010 Score: 445
Period size: 158 Copynumber: 2.1 Consensus size: 159
54669 AACGAAGTCA
* * ** * *
54679 TCTCAATAGGATACACGATATAGATATTTTGGTTTCACAAGAAAGGCATTT-TTCCCACCACTTT
1 TCTCATTAGGATACACGATATAGATACTTCAGTTTCACAACAAAGGC-TTTCTTCCCACCAATTT
* * *
54743 TTGTAAAGTCTAAGTTCGTGCCTCAAATGCGACAAAAATGGATTCTACTAGTGATCTTTATTCAT
65 TTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAAAATGGATTCTACTAATGATCTTCATTCAT
*
54808 TTTGTGAT-TAGAC-ACTATAAACACATTC
130 TTTGTGATAGAGACTACTATAAACACATTC
* * **
54836 TCCTCATTAGGATACACGATATTGATGCTTCAGTTTTGCAACAAAGGCTTTCTTCCCACCAATTT
1 T-CTCATTAGGATACACGATATAGATACTTCAGTTTCACAACAAAGGCTTTCTTCCCACCAATTT
* * *
54901 TTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCTT
65 TTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAAAATGGATTCTACTAATGATCTTCATTCAT
*
54966 TTTGTGATAAGAGACTACTATAAGCACATTC
130 TTTGTGAT-AGAGACTACTATAAACACATTC
54997 TCTGCATTAGGATA
1 TCT-CATTAGGATA
55011 AATGATGTTG
Statistics
Matches: 151, Mismatches: 18, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
157 4 0.03
158 116 0.77
160 6 0.04
161 25 0.17
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.35
Consensus pattern (159 bp):
TCTCATTAGGATACACGATATAGATACTTCAGTTTCACAACAAAGGCTTTCTTCCCACCAATTTT
TGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAAAATGGATTCTACTAATGATCTTCATTCATT
TTGTGATAGAGACTACTATAAACACATTC
Found at i:56055 original size:472 final size:473
Alignment explanation
Indices: 54812--56115 Score: 1789
Period size: 474 Copynumber: 2.8 Consensus size: 473
54802 ATTCATTTTG
* * * * *
54812 TGATTAGACACTATAAACACATTC-TCCTCATTAGGATACACGATATTGATG-CTTCAGTTTTGC
1 TGATTAGGCACTATAAACACAGTCTTCC-CATTAAGATACACGATATTGATGCCTT-GGTTTCGC
54875 AACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACAT
64 AACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACAT
* * * *
54940 GGATTCTAGTAATGATCTTCATTCTTTTTGTGATAAGAGACTACTATAAGCACATTCTCTGCATT
129 GGATTCTAGTAATGATCTTCATTCTTTTTGTGATAAG-GGC-ACTATAAACACATTTTCCGCATT
* * *
55005 AGGATAAATGATGTTGATGATTTTCTTTTGCACGAAAATCTTTTCTTTGCCCAATTATCCTTAAA
192 AGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCAATTATCCTTAAA
* * *
55070 ATCAATGTTCATCCCCTGAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGA
257 ATCAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGA
* ** ** * * * *
55135 TTGGGAAGCTAAAACACATTGCCTTCGTTAGGATACATGACATTGATGCTTTGGTGTCTCAAGAA
322 TTGGGAGGCCGAAACACATTGCCTTCACTAGGATACATGACATTAAAGCTTGGGTATCTCAAGAA
* *
55200 AAGCCTTTCTTCCTGCCATTTTTGATAGAATCAAGTTTTTCTCTTAAATAAGACAAACATAAATA
387 AAGCCTTTCTTCCTGCCATTTTTGATAGAATAAAGTTTATCTCTTAAATAAGACAAACATAAATA
55265 CTCATCCTAATCCCCAATCTTT
452 CTCATCCTAATCCCCAATCTTT
* * * * * *
55287 TCATTATTGGGTACCATAAACACAGTCTTCTCA-TATGATACACGATATTGATGCTTTGGTTTCG
1 TGATTA---GGCACTATAAACACAGTCTTCCCATTAAGATACACGATATTGATGCCTTGGTTTCG
* *** * * * *
55351 CCACAAAGGCTTTCTTCTTTCCAATTTTTGTAATGTCTAAATTTGTGCCTCAAATGAGGCAAACA
63 CAACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACA
* * *
55416 TGGATTCTTGTAAAGATCTTCATTCTTTTTGTGATAA-GGCACTATAAACACATTCTT-CGCAGT
128 TGGATTCTAGTAATGATCTTCATTCTTTTTGTGATAAGGGCACTATAAACACATT-TTCCGCATT
* *
55479 AGGATAAATGACATTGATGATTTTCTTTTGCGTGGAAATCTTTTCTTTGCCCAATTATCCTTAAA
192 AGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCAATTATCCTTAAA
* * * * *
55544 ATCAAAGTTCATCCCTTGAATAAGATAAGCGTTGATTCTCATAATAGTCTCTATTCTTTTCAAGA
257 ATCAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGA
55609 TTGGGAGGCCGAAACACATTGCCTTCACTAGGATACATGACATTAAAGCTTGGGTATCTCAAGGA
322 TTGGGAGGCCGAAACACATTGCCTTCACTAGGATACATGACATTAAAGCTTGGGTATCTCAA-GA
* * * * * *
55674 AAAG-CTTTTTTTCTCGCTATTTTTGGTAGAATTAAAGTTTATCTCTTAAATAAGCCAAACATGA
386 AAAGCCTTTCTTCCT-GCCATTTTTGATAGAA-TAAAGTTTATCTCTTAAATAAGACAAACATAA
* *
55738 ATACTCATCCTAATCCCTATTC-TT
449 ATACTCATCCTAATCCCCAATCTTT
* * *
55762 TGATTAGGCACTATAAACATAGTCTTCCCATTAAGATACATGATATTTATGCCTTGGTTTCGCAA
1 TGATTAGGCACTATAAACACAGTCTTCCCATTAAGATACACGATATTGATGCCTTGGTTTCGCAA
* * * * * * *
55827 CAAAGGTTTTCTACCCACCAATTTTTGTAAAGTCTAAGGTCGTGCTTCAAAAGAGACAAACACGA
66 CAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGG
* *
55892 ATTCTAGTAATGATCTTCATTCTTTTTGAGA-AAGGGCACTATAAACACATTTTCCACATTAGGA
131 ATTCTAGTAATGATCTTCATTCTTTTTGTGATAAGGGCACTATAAACACATTTTCCGCATTAGGA
* *
55956 TGAATGATATTGATGATTTT-TTTTGCATGGAAATCTTTTTTTTGCCCAATTATCCTTAAAATCA
196 TAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCAATTATCCTTAAAATCA
56020 AAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGG
261 AAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGG
*
56085 GAGGCCGAAACACATTACCTTCACTAGGATA
326 GAGGCCGAAACACATTGCCTTCACTAGGATA
56116 TGTTAGGATT
Statistics
Matches: 721, Mismatches: 96, Indels: 27
0.85 0.11 0.03
Matches are distributed among these distances:
472 156 0.22
473 151 0.21
474 195 0.27
475 35 0.05
476 48 0.07
477 116 0.16
478 18 0.02
479 2 0.00
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.35
Consensus pattern (473 bp):
TGATTAGGCACTATAAACACAGTCTTCCCATTAAGATACACGATATTGATGCCTTGGTTTCGCAA
CAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGG
ATTCTAGTAATGATCTTCATTCTTTTTGTGATAAGGGCACTATAAACACATTTTCCGCATTAGGA
TAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCAATTATCCTTAAAATCA
AAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGG
GAGGCCGAAACACATTGCCTTCACTAGGATACATGACATTAAAGCTTGGGTATCTCAAGAAAAGC
CTTTCTTCCTGCCATTTTTGATAGAATAAAGTTTATCTCTTAAATAAGACAAACATAAATACTCA
TCCTAATCCCCAATCTTT
Found at i:56415 original size:9 final size:9
Alignment explanation
Indices: 56395--56427 Score: 57
Period size: 9 Copynumber: 3.6 Consensus size: 9
56385 TACATCACTG
56395 TTCATCACTA
1 TTCAT-ACTA
56405 TTCATACTA
1 TTCATACTA
56414 TTCATACTA
1 TTCATACTA
56423 TTCAT
1 TTCAT
56428 GTAATTTATC
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 18 0.78
10 5 0.22
ACGTcount: A:0.30, C:0.24, G:0.00, T:0.45
Consensus pattern (9 bp):
TTCATACTA
Found at i:58729 original size:455 final size:453
Alignment explanation
Indices: 58135--59026 Score: 1161
Period size: 455 Copynumber: 2.0 Consensus size: 453
58125 GCATGAAAAT
* * *
58135 CTTTTCTTTGCCCATATCCTTAAAATCAAAGTTTATCCCTTGAATAAGATAAGCATCGATTATCA
1 CTTTTCTTTGCCCATATCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTATCA
* * * *
58200 TTACAGTCTCCATTCTTTTTAAAATTGAGAAGCCAAAACACATTGCCTTCGTTAGGATACATGAC
66 TAACAGTCTCAATTCTTTTTAAAATTGAGAAGCCAAAACACATTCCCTTCATTAGGATACATGAC
* *
58265 ATTGATGC-TTAGGTGTCATATTAAAAGATTTT-TGTCCCG-CTGTTTTTGATAGAATCAAAGTT
131 ATTGATGCTTTAGGTCTCA-A-GAAAAGATTTTCT-TCCCGTC-GTTTTTGATAGAATCAAAGTT
**
58327 T-TCTCTTAAATAAGACAAACATGAATACTCATCCTAATCCCCAATCTTTTCATTAGTAGGCACC
192 TGTCTCTTAAATAAGACAAACATGAATACTCATCCTAATCCCCAATCTTTTCAGGAGTAGGCACC
* * ** *
58391 ATAAA-CATAGTCTTCTCATTAGGATTCACGATATTGATACTTTGGTTTTGCCACAAAGGC-TTT
257 ATAAATCA-AGGCTTCTCATTAGGATACACGATATTGATACTTTGGTTTCACAACAAAGGCATTT
* ** *
58454 CTTCCCACCGAT-TGTTGTAAAGTCTAAGTTCGTGCCTCAAATAAGACAATTATGGATTCTAGTA
321 -TTCCCACCAATAT-TTGTAAAGTCTAAGTTCGTGCCTCAAATAAGACAAAAATGGATTCTACTA
* * *
58518 ATGATGTTCATTCTTTTTGTGATAAGGCACTATAAACACATTCTCCTCATTAGGGTAAAAGATAT
384 ATGATCTTCATTCATTTTGTGATAAGGCACTATAAAAACATTCTCCTCATTAGGGTAAAAGATAT
58583 TGATG
449 TGATG
* * *
58588 CTTTTCTTTGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCT
1 CTTTTCTTTGCCC-A-TATCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTAT
* * * * *
58653 CGTAACAGTCTTAATT-TTTTTCAAGATTGGGAAGCCAAAACGCATTCCCTTCATTAGGATACAT
64 CATAACAGTCTCAATTCTTTTT-AAAATTGAGAAGCCAAAACACATTCCCTTCATTAGGATACAT
* * *
58717 GACATTGATGCTTTATGTCTCAAGAAAAGCTTTTCTTCTCGTCGTTTTTGATAGAATCAAAGTTT
128 GACATTGATGCTTTAGGTCTCAAGAAAAGATTTTCTTCCCGTCGTTTTTGATAGAATCAAAGTTT
* * * * * * *
58782 GTCTCTTAAATAAGGCAAACATGAATGCTCATGCTAATCCCCATTCTTTTTAGGATTAGGCATCA
193 GTCTCTTAAATAAGACAAACATGAATACTCATCCTAATCCCCAATCTTTTCAGGAGTAGGCACCA
* * * * * *
58847 TAAATGAAGGCTTTTCATTAGGATACATGATATTTATATTTTGGTTTCACAAGAAAGGCATTTTT
258 TAAATCAAGGCTTCTCATTAGGATACACGATATTGATACTTTGGTTTCACAACAAAGGCATTTTT
* * * **
58912 TCCACCAATATTTGTAAAGTCTAAGTTTGTGCCTTAAATGTGACAAAAATGGATTCTACTAATGA
323 CCCACCAATATTTGTAAAGTCTAAGTTCGTGCCTCAAATAAGACAAAAATGGATTCTACTAATGA
*
58977 TCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAGG
388 TCTTCATTCATTTTGTGATAAGGCACTATAAAAACATTCTCCTCATTAGG
59027 ATACACCTTA
Statistics
Matches: 376, Mismatches: 53, Indels: 18
0.84 0.12 0.04
Matches are distributed among these distances:
453 13 0.03
454 41 0.11
455 309 0.82
456 13 0.03
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.36
Consensus pattern (453 bp):
CTTTTCTTTGCCCATATCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTATCA
TAACAGTCTCAATTCTTTTTAAAATTGAGAAGCCAAAACACATTCCCTTCATTAGGATACATGAC
ATTGATGCTTTAGGTCTCAAGAAAAGATTTTCTTCCCGTCGTTTTTGATAGAATCAAAGTTTGTC
TCTTAAATAAGACAAACATGAATACTCATCCTAATCCCCAATCTTTTCAGGAGTAGGCACCATAA
ATCAAGGCTTCTCATTAGGATACACGATATTGATACTTTGGTTTCACAACAAAGGCATTTTTCCC
ACCAATATTTGTAAAGTCTAAGTTCGTGCCTCAAATAAGACAAAAATGGATTCTACTAATGATCT
TCATTCATTTTGTGATAAGGCACTATAAAAACATTCTCCTCATTAGGGTAAAAGATATTGATG
Found at i:59554 original size:159 final size:159
Alignment explanation
Indices: 59335--59669 Score: 411
Period size: 159 Copynumber: 2.1 Consensus size: 159
59325 ATTGCCTTTG
* * * * * * * *
59335 TTAGGCTACATGACATTGATGCTTGGGTATCTCAAGAAAAGCTTTTCTTCCCGTCGTTTTTGATT
1 TTAGGATACAAGATATTGATGCTTGGGTATCGCAAGAAAAGATTTTCGTCCCGACGTTTTTGATA
* * **
59400 GAATTAAAGTTGGTCTCTTAAATAAGACAAACGA-GAATACTCTTACTAATCCCCATTCTTTTCA
66 GAATCAAAGTTGATCTCTTAAATAAGACAAAC-ATGAATACTCACACTAATCCCCATTCTTTTCA
** *
59464 TTATTAGGCACCATAAACATAGTCTTCTCC
130 GGATTAGGCACCATAAACATAGTCTTCTCA
* * * * *
59494 TTAGGATACACGATATTGTTGCTTTGGTGTCGCAAGAAAAGATTTTCGTCCTGACGTTTTTGATA
1 TTAGGATACAAGATATTGATGCTTGGGTATCGCAAGAAAAGATTTTCGTCCCGACGTTTTTGATA
* * * * *
59559 GAATCAAAGTTTATCTCTTAAATAAGATAAACATGAATACTCACACTAATTCTCATTCTTTTTAG
66 GAATCAAAGTTGATCTCTTAAATAAGACAAACATGAATACTCACACTAATCCCCATTCTTTTCAG
**
59624 GATTAGGCACGTTAAACATAGTCTTCTCA
131 GATTAGGCACCATAAACATAGTCTTCTCA
59653 TTAGGATACAAGATATT
1 TTAGGATACAAGATATT
59670 AATTCTTTGG
Statistics
Matches: 148, Mismatches: 27, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
158 1 0.01
159 147 0.99
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (159 bp):
TTAGGATACAAGATATTGATGCTTGGGTATCGCAAGAAAAGATTTTCGTCCCGACGTTTTTGATA
GAATCAAAGTTGATCTCTTAAATAAGACAAACATGAATACTCACACTAATCCCCATTCTTTTCAG
GATTAGGCACCATAAACATAGTCTTCTCA
Found at i:59991 original size:621 final size:620
Alignment explanation
Indices: 58588--60276 Score: 1779
Period size: 621 Copynumber: 2.7 Consensus size: 620
58578 GATATTGATG
*
58588 CTTTTCTTTGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCT
1 CTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCT
* *
58653 CGTAACAGTCTT-AATTTTTTTCAAGATTGGGAAGCCAAAACGCATTCCCTTCATTAGGATACAT
66 CGTAACAGT-TTCCATTCTTTTCAAGATTGGGAAGCCAAAACGCATTCCCTTCATTAGGATACAT
*
58717 GACATTGATGCTTT-ATGTCTCAAGAAAAGCTTTTCTTCTCGTCGTTTTTGATAGAATCAAAGTT
130 GACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCTCGTCGTTTTTGATAGAATCAAAGTT
* * * * *
58781 TGTCTCTTAAATAAGGCAAACATGAATGCTCATGCTAATCCCCATTCTTTTTAGGATTAGGCATC
195 TGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACC
* * * * ** * *
58846 ATAAATGA-AGGCTTTTCATTAGGATACATGATATT-TATATTTTGGTTTCACAAGAAAGGCATT
260 ATAAA-CATAGTCTTCTCATTAGGATACACGATATTGT-TGCTTTGGTGTCACAAGAAAAGCATT
* * * ** * *
58909 TTTTCCACCAATATTTGTAAAGTCTAAGTTTGTGCCTTAAATGTGACAAAAATGGATTCTACTAA
323 TTGTCCACCAATATTTGTAAAGTCAAAGTTTATGCCTTAAATAAGACAAAAATGAATTCCACTAA
* * *
58974 TGATCTTCATTCATTTTGTGATTAGGCACTATAAAAACATTCTCCTCATTAGGATACACCTTATT
388 T-ATCTTCATTCATTTTGTGATTAGGCACTATAAAAACAGTCTCCTCATTAGGATACAACATATT
* * * * * * *
59039 GATGCTTCGTTTCACAGCAAAGGCTTTCTTCCCACGAATGGTTCTAAAGTCTAAGTTCGTGTCTC
452 GA-GATTCGTTT--------AGGCTTTCTTCCCACCAATGGTTCAAAAGTCTAAATTCATGCCCC
* *
59104 AAAGGAGACAAACATAGATTCTAGTAATGATCTTCATTCTTTTCGTGATAAGGCACTATACATAT
508 AAAGGAGACAAACATAGATTCTAGTAATGATCTTCATTCTTTTCGTGATAAGGCACAATAAATAT
* *
59169 TCTCCTCATTAGGATGAATGACATTGACGGCTTTTTTTGCATGGAAAT
573 TCTCCTCATTAGGATAAATGACATTGACGACTTTTTTTGCATGGAAAT
* * * * *
59217 CTTTTCATTGCCCTATTTTCCTGAAAATCAAAGTTCATCCCTTAAGTAAGATAAGCATCGATTAT
1 CTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCT
* * * * * ** *
59282 CGTTACAGTCTCCATTCTTTTCAAGATTGGGAAGCGAAAACACATTGCCTTTGTTAGGCTACATG
66 CGTAACAGTTTCCATTCTTTTCAAGATTGGGAAGCCAAAACGCATTCCCTTCATTAGGATACATG
* * * * * *
59347 ACATTGATGCTTGGGTATCTCAAGAAAAGCTTTTCTTCCCGTCGTTTTTGATTGAATTAAAGTTG
131 ACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCTCGTCGTTTTTGATAGAATCAAAGTTT
* **
59412 GTCTCTTAAATAAGACAAACGA-GAATACTCTTACTAATCCCCATTCTTTTCATTATTAGGCACC
196 GTCTCTTAAATAAGACAAAC-ATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACC
* *
59476 ATAAACATAGTCTTCTCCTTAGGATACACGATATTGTTGCTTTGGTGTCGCAAGAAAAG-ATTTT
260 ATAAACATAGTCTTCTCATTAGGATACACGATATTGTTGCTTTGGTGTCACAAGAAAAGCATTTT
* * * *
59540 CGTCCTGA-C-GTTTTTGATAGAA-TCAAAGTTTAT-CTCTTAAATAAGATAAACATGAATACTC
325 -GTCC--ACCAATATTTG-TA-AAGTCAAAGTTTATGC-CTTAAATAAGACAAAAATGAAT--TC
* * * *
59601 ACACTAAT-TC-TCATTCTTTTTAG-GATTAGGCACGT-TAAACATAGTCTTCTCATTAGGATAC
382 -CACTAATATCTTCATTCATTTT-GTGATTAGGCAC-TATAAAAACAGTCTCCTCATTAGGATAC
* * ** *
59662 AAGATATT-A-ATTC-TTT-GG-TTTTTGTCCCACCAATTTTTGAAAAGTCTAAATTCATGCCCC
444 AACATATTGAGATTCGTTTAGGCTTTCT-TCCCACCAATGGTTCAAAAGTCTAAATTCATGCCCC
* * * *
59722 AAATGAGACAAACTTAGATTTTAGTAATGATCTTCATTCATTTT-GTGATTAGGCACAATAAATA
508 AAAGGAGACAAACATAGATTCTAGTAATGATCTTCATTC-TTTTCGTGATAAGGCACAATAAAT-
* * *
59786 CATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAAT
571 -ATTCTCCTCATTAGGATAAATGACATTGACGACTTT-TTTTGCATGGAAAT
* *
59838 CTTTCCTTTGCCCTATTTTCCTTAAAATCAAAGTTTATCCCTTAAATAAGACAAGCATC-AGTTC
1 CTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGA-TTC
* * * * * *
59902 TCGTAACAGTTTCCATTCTTTTCAAGACTAGGAAGCTAAAATGCATTTCCTTCATTAAGATACAT
65 TCGTAACAGTTTCCATTCTTTTCAAGATTGGGAAGCCAAAACGCATTCCCTTCATTAGGATACAT
* * ** *
59967 GACATTGGTGCTTTGGTGTCTCAAGAAAAGCTTTCCTTCTCACCATTTTTGATAGAATCAAAGTT
130 GACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCTCGTCGTTTTTGATAGAATCAAAGTT
* * * *
60032 TGTCTCTTAAATAACACAAACATGAATACTCACACTAATCCCTAGTCTTTTCAGGATTAGGCACC
195 TGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACC
* * * * ** * *
60097 ACAAAACATAGTCTTCTCGTTAGGATACACGATATTGATGCTTTGGTTTTGCAACAAAGGC-TTT
260 A-TAAACATAGTCTTCTCATTAGGATACACGATATTGTTGCTTTGGTGTCACAAGAAAAGCATTT
* ** * ** * ** * * *
60161 CT-TCCCACCAAT-TATTGTAAAGTCTAAGTTCGTCCCTCGAATAAGATAAGCATGGATTCTAGT
324 -TGT-CCACCAATAT-TTGTAAAGTCAAAGTTTATGCCTTAAATAAGACAAAAATGAATTCCACT
* * * *
60224 AATGATCTTCATTCTTTTTGTGATTAGGCACAATAAACACATTCTCCTCATTA
386 AAT-ATCTTCATTCATTTTGTGATTAGGCACTATAAAAACAGTCTCCTCATTA
60277 CAATAAATGA
Statistics
Matches: 883, Mismatches: 140, Indels: 82
0.80 0.13 0.07
Matches are distributed among these distances:
617 4 0.00
618 86 0.10
619 6 0.01
620 39 0.04
621 302 0.34
622 61 0.07
623 1 0.00
627 3 0.00
628 4 0.00
629 130 0.15
630 154 0.17
631 78 0.09
632 7 0.01
633 2 0.00
634 6 0.01
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.36
Consensus pattern (620 bp):
CTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCT
CGTAACAGTTTCCATTCTTTTCAAGATTGGGAAGCCAAAACGCATTCCCTTCATTAGGATACATG
ACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCTCGTCGTTTTTGATAGAATCAAAGTTT
GTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCA
TAAACATAGTCTTCTCATTAGGATACACGATATTGTTGCTTTGGTGTCACAAGAAAAGCATTTTG
TCCACCAATATTTGTAAAGTCAAAGTTTATGCCTTAAATAAGACAAAAATGAATTCCACTAATAT
CTTCATTCATTTTGTGATTAGGCACTATAAAAACAGTCTCCTCATTAGGATACAACATATTGAGA
TTCGTTTAGGCTTTCTTCCCACCAATGGTTCAAAAGTCTAAATTCATGCCCCAAAGGAGACAAAC
ATAGATTCTAGTAATGATCTTCATTCTTTTCGTGATAAGGCACAATAAATATTCTCCTCATTAGG
ATAAATGACATTGACGACTTTTTTTGCATGGAAAT
Found at i:60326 original size:477 final size:473
Alignment explanation
Indices: 59498--60768 Score: 1553
Period size: 477 Copynumber: 2.7 Consensus size: 473
59488 TTCTCCTTAG
* * * * * * * *
59498 GATACACGATATTGTTGCTTTGGTGTCGCAAGAAAAGATTTTCGTCCTGA-CGTTTTTGATAGAA
1 GATACATGACATTGATGCTTTGGTGTCGCAAGAAAAG-CTTTCCTTCTCACCATTTTTGATAGAA
* * *
59562 TCAAAGTTTATCTCTTAAATAAGATAAACATGAATACTCACACTAAT-TCTCATTCTTTTTAGGA
65 TCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCACACTAATCCCT-ATTCTTTTTAGGA
* * * *
59626 TTAGGCACGTTAAACATAGTCTTCTCATTAGGATACAAGATATTAATTCTTTGG--TT-------
129 TTAGGCAC-ATAAACATAGTCTTCTCATTAGGATACACGATATTGATACTTTGGTTTTGCAAAAA
* * * * * * * *
59682 ---TTTGTCCCACCAATTTTTGAAAAGTCTAAATTCATGCCC-CAAATGAGACAAACTTAGATTT
193 GGCTTTTTCCCACCAATTATTGTAAAGTCTAAGTTCGT-CCCTCAAATGAGACAAACATGGATTC
*
59743 TAGTAATGATCTTCATTCATTTTGTGATTAGGCACAATAAATACATTCTCCTCATTAGGATAAAT
257 TAGTAATGATCTTCATTCATTTTGTGATTAGGCACAATAAACACATTCTCCTCATTAGGATAAAT
59808 GATATTGATGATTTTCTTTTGCATGGAAATCTTTCCTTTGCCCTATTTTCCTTAAAATCAAAGTT
322 GATATTGATGATTTTCTTTTGCATGGAAATCTTTCCTTTGCCCTATTTTCCTTAAAATCAAAGTT
* * *** *
59873 TATCCCTTAAATAAGACAAGCATCAG-TTCTCGTAACAGTTTCCATTCTTTTCAAGACTAG-GAA
387 CATCCCTTAAATAAGACAAGCAT-AGATTCTCATAACAGCCGCCATTCATTTCAAGA-TAGAGAA
* ** *
59936 GCTAAAATGCATTTCCTTCATTAA
450 GCCAAAACACATTGCCTTCATTAA
* *
59960 GATACATGACATTGGTGCTTTGGTGTCTCAAGAAAAGCTTTCCTTCTCACCATTTTTGATAGAAT
1 GATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTCCTTCTCACCATTTTTGATAGAAT
* * *
60025 CAAAGTTTGTCTCTTAAATAACACAAACATGAATACTCACACTAATCCCTAGTCTTTTCAGGATT
66 CAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCACACTAATCCCTATTCTTTTTAGGATT
* * *
60090 AGGCACCACAAAACATAGTCTTCTCGTTAGGATACACGATATTGATGCTTTGGTTTTGCAACAAA
131 AGGCA-CA-TAAACATAGTCTTCTCATTAGGATACACGATATTGATACTTTGGTTTTGCAA-AAA
* * * *
60155 GGCTTTCTTCCCACCAATTATTGTAAAGTCTAAGTTCGTCCCTCGAATAAGATAAGCATGGATTC
193 GGCTTT-TTCCCACCAATTATTGTAAAGTCTAAGTTCGTCCCTCAAATGAGACAAACATGGATTC
* **
60220 TAGTAATGATCTTCATTCTTTTTGTGATTAGGCACAATAAACACATTCTCCTCATTACAATAAAT
257 TAGTAATGATCTTCATTCATTTTGTGATTAGGCACAATAAACACATTCTCCTCATTAGGATAAAT
* * *
60285 GATATTGATGATTTTCTTTTGCATGGAAATTTTTCCTTTGCCTTATTTTCCTTAAAATTAAAGTT
322 GATATTGATGATTTTCTTTTGCATGGAAATCTTTCCTTTGCCCTATTTTCCTTAAAATCAAAGTT
* * * *
60350 CATCCCTTAAATAAGACAAGCATTGATTCTCATAATAGCCGCCTTTCATTTCAAGATTGAGAAGC
387 CATCCCTTAAATAAGACAAGCATAGATTCTCATAACAGCCGCCATTCATTTCAAGATAGAGAAGC
*
60415 CAAAACACATTGCCTTCATTAG
452 CAAAACACATTGCCTTCATTAA
* *
60437 GATACATGACATTGATGCTTTGGTGTAGCAAGAAAAGCTTTTCTT-TC-CGTCATTTTTGATAGA
1 GATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTCCTTCTCAC--CATTTTTGATAGA
* * * *
60500 ATCAAAGTTTGTCTCTTAAA-AAGGCAAACATGAATGCTCATACTAATCCCCATTCTTTTTAGGA
64 ATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCACACTAATCCCTATTCTTTTTAGGA
* * * *
60564 TTAGGCATCATAAACAAAGTCTTCTCATTAGGATACACGATATTGATATTTTGATTTCGCAAGAA
129 TTAGGCA-CATAAACATAGTCTTCTCATTAGGATACACGATATTGATACTTTGGTTTTGCAA-AA
* * * *
60629 AGGCATTTTTCCCACCAA-TATTTGTAAAGTCGAAGTTTGTGCCTCAAATGTGACAAACATGGAT
192 AGGC-TTTTTCCCACCAATTA-TTGTAAAGTCTAAGTTCGTCCCTCAAATGAGACAAACATGGAT
* * * *
60693 TCTACTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACA-GTTCTTCTCATTAGGATAC
255 TCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACAATAAACACATTCTCCTCATTAGGATA-
60757 AA-GATATTGATG
319 AATGATATTGATG
60769 CTTTGGTTTC
Statistics
Matches: 693, Mismatches: 90, Indels: 40
0.84 0.11 0.05
Matches are distributed among these distances:
461 8 0.01
462 108 0.16
463 42 0.06
465 2 0.00
474 26 0.04
475 141 0.20
476 60 0.09
477 306 0.44
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.36
Consensus pattern (473 bp):
GATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTCCTTCTCACCATTTTTGATAGAAT
CAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCACACTAATCCCTATTCTTTTTAGGATT
AGGCACATAAACATAGTCTTCTCATTAGGATACACGATATTGATACTTTGGTTTTGCAAAAAGGC
TTTTTCCCACCAATTATTGTAAAGTCTAAGTTCGTCCCTCAAATGAGACAAACATGGATTCTAGT
AATGATCTTCATTCATTTTGTGATTAGGCACAATAAACACATTCTCCTCATTAGGATAAATGATA
TTGATGATTTTCTTTTGCATGGAAATCTTTCCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATC
CCTTAAATAAGACAAGCATAGATTCTCATAACAGCCGCCATTCATTTCAAGATAGAGAAGCCAAA
ACACATTGCCTTCATTAA
Found at i:60712 original size:158 final size:157
Alignment explanation
Indices: 60550--60931 Score: 450
Period size: 157 Copynumber: 2.4 Consensus size: 157
60540 TACTAATCCC
*
60550 CATTCTTTTTAG-GATTAGGCATC-ATAAACAAAGTCTTCTCATTAGGATACACGATATTGATAT
1 CATTCTTTTT-GTGATTAGGCA-CAATAAAC-AAGTCTTCTCATTAGGATACAAGATATTGATAT
* * * * *
60613 TTTGATTTCGCAAGAAAGGCATTT-TTCCCACCAATATTTGTAAAGTCGAAGTTTGTGCCTCAAA
63 TTTGATTTCGAAAGAAAGGC-TTTCGTCCCACCAATATTTGAAAAGTCGAAATTCGTGCCTCAAA
*
60677 TGTGACAAACATGGATTCTACTAATGATCTT
127 TGAGACAAACATGGATTCTACTAATGATCTT
* * **
60708 CATTCATTTTGTGATTAGGCACTATAAAC-AGTTCTTCTCATTAGGATACAAGATATTGATGCTT
1 CATTCTTTTTGTGATTAGGCACAATAAACAAG-TCTTCTCATTAGGATACAAGATATTGATATTT
* * * * * *
60772 TGGTTTCGAAATAATGGCTTTCGTCCCACCAATTTTTGAAAAGTCTAAATTCGTTCCTCAAATGA
65 TGATTTCGAAAGAAAGGCTTTCGTCCCACCAATATTTGAAAAGTCGAAATTCGTGCCTCAAATGA
* *
60837 GACAAACTTGGATTCTAGTAATGATCTT
130 GACAAACATGGATTCTACTAATGATCTT
* * * *
60865 CATTCTTTTTGTGATTAGGTACAATAAACACATTCTCCTCATTGGGATA-AATGATATTGATGAT
1 CATTCTTTTTGTGATTAGGCACAATAAACA-AGTCTTCTCATTAGGATACAA-GATATTGAT-AT
60929 TTT
63 TTT
60932 CTTTTGCACG
Statistics
Matches: 190, Mismatches: 26, Indels: 15
0.82 0.11 0.06
Matches are distributed among these distances:
156 5 0.03
157 134 0.71
158 47 0.25
159 4 0.02
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.37
Consensus pattern (157 bp):
CATTCTTTTTGTGATTAGGCACAATAAACAAGTCTTCTCATTAGGATACAAGATATTGATATTTT
GATTTCGAAAGAAAGGCTTTCGTCCCACCAATATTTGAAAAGTCGAAATTCGTGCCTCAAATGAG
ACAAACATGGATTCTACTAATGATCTT
Found at i:62543 original size:158 final size:156
Alignment explanation
Indices: 62380--64641 Score: 390
Period size: 158 Copynumber: 14.3 Consensus size: 156
62370 TCATCCCCTG
62380 AATAAGATAAGCATCGATTCTCATAATAGTCCCCATTCTTTTCAAGATTGGGAAGCAAAAACACA
1 AATAAGATAAGCATCGATTCTCATAATAGTCCCCATTCTTTTCAAGATTGGGAAGCAAAAACACA
* *
62445 TTACCTTCATTAGGATACACGATATTGATGCTTTGTTGTCT-CAAGGAAAGATTTTCTTCCCACC
66 TT-CCTTCATTAGGATACACGACATTGATGCTTTGTT-T-TGCAAGGAAAGCTTTTCTTCCCACC
* *
62509 CTTTTTATAAAATCAAAGTTTGTCTCTTA
128 ATTTTTATAAAATCAAAGTTCGTCTCTTA
* ** ** * * * *** ** * * * * * *
62538 AATAAGACAATTATAAATACTCATACTAATCCCCAAAATTTTCATTATTAGGCACCATAAATATA
1 AATAAGATAAGCATCGATTCTCATAATAGTCCCCATTCTTTTCAAGATTGGGAAGCAAAAACACA
* * * * * *
62603 GTCTTCTCATTAGGATACATGATATTGGTGCTTTGGTTTTGC-AGCAAAGGC-TTTCTTCCCACC
66 TTCCT-TCATTAGGATACACGACATTGATGCTTT-GTTTTGCAAGGAAA-GCTTTTCTTCCCACC
* * * * * * * *
62666 AATTGTTGTAAAGTCTAAGTCCGT-GCGTC
128 -ATTTTTATAAAATCAAAGTTCGTCTCTTA
* * * * ** *** *
62695 AATGAG-TCAAACATGGATTCT-AGTAA-CGATCTTCATTCTTTTTGTGA-T--AAAGCACTATA
1 AATAAGAT-AAGCATCGATTCTCA-TAATAG-TCCCCATTCTTTTCAAGATTGGGAAGCA--A-A
* * * * ** *
62754 AACACATTCTCCTCATTAGGATAAATGACATTGATGGTGTT-TTTTGCATTGAAATCTTTTCTTT
60 AACACATTC-CTTCATTAGGATACACGACATTGATGCT-TTGTTTTGCAAGGAAAGCTTTTC-TT
* * * * *
62818 GCCTA--ATTATCCTA-AAAATCAAAGTTCATCTCCTG
122 -CCCACCATT-T-TTATAAAATCAAAGTTCGTCTCTTA
* * * *
62853 AATAAGATAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCAAAACCACA
1 AATAAGATAAGCATCGATTCTCATAATAGTCCCCATTCTTTTCAAGATTGGGAAGCAAAAACACA
*
62918 TTACCTTCATTAGGATGCACGACATTGATGCTTTGTTGTCT-CAAGGAAAGCTTTTCTTCCTTC-
66 TT-CCTTCATTAGGATACACGACATTGATGCTTTGTT-T-TGCAAGGAAAGCTTTTCTTCC--CA
* * *
62981 CCTTTTTTATAGAATCAAAGTTTGTCTCTTA
126 CCATTTTTATAAAATCAAAGTTCGTCTCTTA
* ** ** * * * *** ** * * * * *
63012 AATAAGACAAAAATAAATACTCATACTAATCCCCAAAATTTTCATTATTAGGCACCATAAACATA
1 AATAAGATAAGCATCGATTCTCATAATAGTCCCCATTCTTTTCAAGATTGGGAAGCAAAAACACA
* * * * * * * *
63077 GTCTTCTCATTGGGATACACGATATTAATGCTTTGGTTTCGCAA-CAATGGC-TTTCTTCCCACC
66 TTCCT-TCATTAGGATACACGACATTGATGCTTT-GTTTTGCAAGGAA-AGCTTTTCTTCCCACC
** * * * *
63140 AATTGCTGTAAAGTCTAAGTTCGTGC-CTCA
128 -ATTTTTATAAAATCAAAGTTCGT-CTCTTA
* * * * * ** *** ** * * *
63170 AGTGAGACAAACATGGATTCT-AGTAAT-GATCTTCATTCTTTTTGTGATAAGGCA-CTATAAGC
1 AATAAGATAAGCATCGATTCTCA-TAATAG-TCCCCATTCTTTTCAAGATTGGGAAGC-AAAAAC
* * * * * * *
63232 ACATTTTCC-TCATTACGATAAATGACATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGC
63 ACA--TTCCTTCATTAGGATACACGACATTGATG-CTTTGTTTTGCAAGGAAAGCTTTTC-TT-C
* * * *
63296 CTA--ATTATCCT-TAAAATCAAAGTTCATCTCTTG
123 CCACCATT-T-TTATAAAATCAAAGTTCGTCTCTTA
* * * * * *
63329 AATAAGACAAGCATCGATTCTCGTAATAGTCTCTATTCTTTTTAAGATTGGGAAGCCAAAACACA
1 AATAAGATAAGCATCGATTCTCATAATAGTCCCCATTCTTTTCAAGATTGGGAAGCAAAAACACA
* * * * *
63394 TTGCCTTCATTAGGATACAGGACATTGATGCTTTGGTGTCT-CGAGAAAAGCTTTTCTTCTCACC
66 TT-CCTTCATTAGGATACACGACATTGATGCTTT-GT-TTTGCAAGGAAAGCTTTTCTTCCCACC
* * *
63458 GTTTTTGATAGAATCAAAGTTTGTCAT-TTA
128 ATTTTT-ATAAAATCAAAGTTCGTC-TCTTA
* * ** * ** * ** * *
63488 ATTAAGACAAATAT-GAATACTCATCCTAATCCCCATTCTTTTCATTATTAGGG-A-CTATAAAT
1 AATAAGATAAGCATCG-ATTCTCATAATAGTCCCCATTCTTTTCAAGATT-GGGAAGC-AAAAAC
** * * * * * * *
63550 GTAGTCTTCTCATTAGGATACACAATATTGATGCTTTGGTTTCGCAA-CAAAGGC-TTTCTTCCT
63 ACATTCCT-TCATTAGGATACACGACATTGATGCTTT-GTTTTGCAAGGAAA-GCTTTTCTTCCC
* * * * *
63613 ACTAATTGTTGTAAAGTCTAAG-TCTGTGCATC--A
125 AC-CATTTTTATAAAATCAAAGTTC-GT-C-TCTTA
* * * * *** *** **
63646 AATGAGACAAACATGGATTCT-AGTAAT-GATCTTTATTCTTTTTGTGA-TAAGACA-CTATAAA
1 AATAAGATAAGCATCGATTCTCA-TAATAG-TCCCCATTCTTTTCAAGATTGGGA-AGC-A-AAA
* * * * * * *
63707 A-GCATTCTCCTCATTAGGATA-ACTGACATTGATGATTTTTTTTTGGCATGAAAATCTTTTCTT
61 ACACATTC-CTTCATTAGGATACAC-GACATTGATG-CTTTGTTTT-GCAAGGAAAGCTTTTC-T
* * * * *
63770 TGCC-CTATTTTCCT-TAAAATCAAAGTTCATCCCTTG
121 TCCCACCATTTT--TATAAAATCAAAGTTCGTCTCTTA
* * * * * * * * * **
63806 AATATGATAAGCATCAATTATCGTTACT-GTCTCCATCCTTTTCAAGATTAGGAAGCCAAAATGC
1 AATAAGATAAGCATCGATTCTC-ATAATAGTCCCCATTCTTTTCAAGATTGGGAAGCAAAAACAC
* * * * *
63870 ATTCTCTTCATTAGGATACATGACATTGATGCTTTCGTGTCGCAAGAAAAGCTTTTCTTCCCGCC
65 ATTC-CTTCATTAGGATACACGACATTGATGCTTT-GTTTTGCAAGGAAAGCTTTTCTTCCCACC
* * *
63935 GTTTTTGATAGAATCAAAGTTTGTCTCTTA
128 ATTTTT-ATAAAATCAAAGTTCGTCTCTTA
** * * * * * * * *
63965 AATAAGGCAAACAT-GAATACTCA-AACTAATCCCCATTCCTTTT-AGGATTAGGCATCATAAAC
1 AATAAGATAAGCATCG-ATTCTCATAA-TAGTCCCCATT-CTTTTCAAGATTGGGAAGCAAAAAC
* * * * ** *
64027 AAAGTCATCTCATTAGGATACACGATATTGATATTTTGGTTTTGCAA-GAAAGGCATTT-TTCCC
63 ACATTCCT-TCATTAGGATACACGACATTGATGCTTT-GTTTTGCAAGGAAA-GCTTTTCTTCCC
* * * **
64090 ACCAATTTTTGTAAAGTCTAAGTTCGTGC-CCCA
125 ACC-ATTTTTATAAAATCAAAGTTCGT-CTCTTA
** * * * * ** * * ** *
64123 AATGCGACAAACATGGATTCTGC-TAGT-GATCTTCATTCATTTTC-TGATTAGG-CCCTATAAA
1 AATAAGATAAGCATCGATTCT-CATAATAG-TCCCCATTC-TTTTCAAGATTGGGAAGC-AAAAA
* * * * ** *
64184 CTCATTCTCCTCATTAGGATACACGATATTGATGCTTCGGTTTAACAA-CAAAGGC-TTTCTTCC
62 CACATTC-CTTCATTAGGATACACGACATTGATGCTT-TGTTTTGCAAGGAAA-GCTTTTCTTCC
* * * *
64247 CACCAATTTTTGTAAAGTCTAAGTTCGTAC-CTCA
124 CACC-ATTTTTATAAAATCAAAGTTCGT-CTCTTA
* * * * ** ** ** * *
64281 AAAAAGACAAACATGGATTCTGC-TAAT-GATCTTCATTCTTTTCGTGATAAGG-CGCTATAAAC
1 AATAAGATAAGCATCGATTCT-CATAATAG-TCCCCATTCTTTTCAAGATTGGGAAGC-AAAAAC
** * * * * * * *
64343 ACATTCTCAACATTAGGATAAATGACATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTACC
63 ACATTC-CTTCATTAGGATACACGACATTGATG-CTTTGTTTTGCAAGGAAAGCTTTTC-TT-CC
** * ** * *
64408 CA--ATTATAAATAAAATCAATGTTTATCCCCTA
124 CACCATT-TTTATAAAATCAAAGTTCGTCTCTTA
* * * * * * *
64440 AATAAGACAAGCATCAATTCTCGTAACAGTCTCCATTCTTTTCAAGATTAGGAAGCTAAAACACA
1 AATAAGATAAGCATCGATTCTCATAATAGTCCCCATTCTTTTCAAGATTGGGAAGCAAAAACACA
** ** * * * *
64505 TTGTTTTCGCTAGGATACACGACATTGATGCTTGGGTGTCT-CAAGAAAAGCTTTTCTTCCTACC
66 TT-CCTTCATTAGGATACACGACATTGATGCTT-TGT-TTTGCAAGGAAAGCTTTTCTTCCCACC
* * *
64569 AATTTTGATAGAATTAAAGATT-GTCTCTTTA
128 -ATTTTTATAAAATCAAAG-TTCGTCTC-TTA
* * * * * *
64600 AATATGACAAACAT-GAATGCTCATACTAATCCCCATTCTTTT
1 AATAAGATAAGCATCG-ATTCTCATAATAGTCCCCATTCTTTT
64642 TAGGATTAGG
Statistics
Matches: 1494, Mismatches: 467, Indels: 284
0.67 0.21 0.13
Matches are distributed among these distances:
154 3 0.00
156 14 0.01
157 127 0.09
158 603 0.40
159 572 0.38
160 147 0.10
161 28 0.02
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (156 bp):
AATAAGATAAGCATCGATTCTCATAATAGTCCCCATTCTTTTCAAGATTGGGAAGCAAAAACACA
TTCCTTCATTAGGATACACGACATTGATGCTTTGTTTTGCAAGGAAAGCTTTTCTTCCCACCATT
TTTATAAAATCAAAGTTCGTCTCTTA
Found at i:63471 original size:476 final size:474
Alignment explanation
Indices: 62138--64204 Score: 2824
Period size: 476 Copynumber: 4.4 Consensus size: 474
62128 TCTTTTCATT
* * *
62138 ATTAGGATACATGATATTGATGCTTTGGTTTCGCAGCAAAGGCTTTTTTCCCACCAATTGTTGTA
1 ATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTGTTGTA
* * *
62203 AAGTCTAAGTCCGTGCGTCAATGAGACAAACATGGATTCTAGTAACGATCTTCATTCTTTTTGTG
66 AAGTCTAAGTTCGTGCCTCAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTG
* * * *
62268 ATAAAGCACTATAAACACATTCTGCTCATTAGGATAAATGACATTGATGGTGTTTTTTGCATTGA
131 ATAAGGCACTATAAACACATTCTCCTCATTAGGATAAATGACATTGATGATGTTTTTTGCATGGA
* *
62333 AATCTTTTCTTTGCCCAATTATCCTAAAAATCAATGTTCATCCCCTGAATAAGATAAGCATCGAT
196 AATCTTTTCTTTGCCTAATTATCCTAAAAATCAAAGTTCATCCCCTGAATAAGATAAGCATCGAT
* * *
62398 TCTCATAATAGTCCCCATTCTTTTCAAGATTGGGAAGCAAAAACACATTACCTTCATTAGGATAC
261 TCTCGTAATAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTACCTTCATTAGGATAC
* * * * * *
62463 ACGATATTGATGCTTTGTTGTCTCAAGGAAAGATTTTCTTCCCACCCTTTTT-ATAAAATCAAAG
326 ACGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCCCACCGTTTTTGATAGAATCAAAG
*
62527 TTTGTCTCTTAAATAAGACAATTATAAATACTCATACTAATCCCCAAAATTTTCATTATTAGGCA
391 TTTGTCTCTTAAATAAGACAAATATAAATACTCATACTAATCCCCAAAATTTTCATTATTAGGCA
*
62592 CCATAAATATAGTCTTCTC
456 CCATAAACATAGTCTTCTC
* * * *
62611 ATTAGGATACATGATATTGGTGCTTTGGTTTTGCAGCAAAGGCTTTCTTCCCACCAATTGTTGTA
1 ATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTGTTGTA
* * * *
62676 AAGTCTAAGTCCGTGCGTCAATGAGTCAAACATGGATTCTAGTAACGATCTTCATTCTTTTTGTG
66 AAGTCTAAGTTCGTGCCTCAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTG
* * *
62741 ATAAAGCACTATAAACACATTCTCCTCATTAGGATAAATGACATTGATGGTGTTTTTTGCATTGA
131 ATAAGGCACTATAAACACATTCTCCTCATTAGGATAAATGACATTGATGATGTTTTTTGCATGGA
*
62806 AATCTTTTCTTTGCCTAATTATCCTAAAAATCAAAGTTCATCTCCTGAATAAGATAAGCATCGAT
196 AATCTTTTCTTTGCCTAATTATCCTAAAAATCAAAGTTCATCCCCTGAATAAGATAAGCATCGAT
* *
62871 TCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAAG-CAAAACCACATTACCTTCATTAGGATG
261 TCTCGTAATAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAA-CACATTACCTTCATTAGGATA
* * ** * *
62935 CACGACATTGATGCTTTGTTGTCTCAAGGAAAGCTTTTCTTCCTTCCCTTTTTTATAGAATCAAA
325 CACGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCCCACCGTTTTTGATAGAATCAAA
*
63000 GTTTGTCTCTTAAATAAGACAAAAATAAATACTCATACTAATCCCCAAAATTTTCATTATTAGGC
390 GTTTGTCTCTTAAATAAGACAAATATAAATACTCATACTAATCCCCAAAATTTTCATTATTAGGC
63065 ACCATAAACATAGTCTTCTC
455 ACCATAAACATAGTCTTCTC
* * * *
63085 ATTGGGATACACGATATTAATGCTTTGGTTTCGCAACAATGGCTTTCTTCCCACCAATTGCTGTA
1 ATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTGTTGTA
63150 AAGTCTAAGTTCGTGCCTCAAGTGAGACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGT
66 AAGTCTAAGTTCGTGCCTCAA-TGAGACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGT
* * * *
63215 GATAAGGCACTATAAGCACATTTTCCTCATTACGATAAATGACATTGATGATTTTCTTTTGCATG
130 GATAAGGCACTATAAACACATTCTCCTCATTAGGATAAATGACATTGATGATGTT-TTTTGCATG
* * * *
63280 GAAATCTTTTCTTTGCCTAATTATCCTTAAAATCAAAGTTCATCTCTTGAATAAGACAAGCATCG
194 GAAATCTTTTCTTTGCCTAATTATCCTAAAAATCAAAGTTCATCCCCTGAATAAGATAAGCATCG
* * *
63345 ATTCTCGTAATAGTCTCTATTCTTTTTAAGATTGGGAAGCCAAAACACATTGCCTTCATTAGGAT
259 ATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTACCTTCATTAGGAT
* * *
63410 ACAGGACATTGATGCTTTGGTGTCTCGAGAAAAGCTTTTCTTCTCACCGTTTTTGATAGAATCAA
324 ACACGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCCCACCGTTTTTGATAGAATCAA
* * * ***
63475 AGTTTGTCAT-TTAATTAAGACAAATATGAATACTCATCCTAATCCCCATTCTTTTCATTATTAG
389 AGTTTGTC-TCTTAAATAAGACAAATATAAATACTCATACTAATCCCCAAAATTTTCATTATTAG
* * **
63539 GGACTATAAATGTAGTCTTCTC
453 GCACCATAAACATAGTCTTCTC
* * *
63561 ATTAGGATACACAATATTGATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCTACTAATTGTTGTA
1 ATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTGTTGTA
* *
63626 AAGTCTAAG-TCTGTGCATCAAATGAGACAAACATGGATTCTAGTAATGATCTTTATTCTTTTTG
66 AAGTCTAAGTTC-GTGCCTC-AATGAGACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTG
* * *
63690 TGATAAGACACTATAAA-AGCATTCTCCTCATTAGGATAACTGACATTGATGATTTTTTTTTGGC
129 TGATAAGGCACTATAAACA-CATTCTCCTCATTAGGATAAATGACATTGATGA-TGTTTTTT-GC
* * * * *
63754 ATGAAAATCTTTTCTTTGCCCT-ATTTTCCTTAAAATCAAAGTTCATCCCTTGAATATGATAAGC
191 ATGGAAATCTTTTCTTTG-CCTAATTATCCTAAAAATCAAAGTTCATCCCCTGAATAAGATAAGC
* * * * * **
63818 ATCAATTATCGTTACT-GTCTCCATCCTTTTCAAGATTAGGAAGCCAAAATGCATT-CTCTTCAT
255 ATCGATTCTCG-TAATAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTAC-CTTCAT
* * * *
63881 TAGGATACATGACATTGATGCTTTCGTGTCGCAAGAAAAGCTTTTCTTCCCGCCGTTTTTGATAG
318 TAGGATACACGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCCCACCGTTTTTGATAG
* * * * *** *
63946 AATCAAAGTTTGTCTCTTAAATAAGGCAAACATGAATACTCAAACTAATCCCCATTCCTTTT-AG
383 AATCAAAGTTTGTCTCTTAAATAAGACAAATATAAATACTCATACTAATCCCCA-AAATTTTCAT
* * * *
64010 GATTAGGCATCATAAACAAAGTCATCTC
447 TATTAGGCACCATAAACATAGTCTTCTC
** * * *
64038 ATTAGGATACACGATATTGATATTTTGGTTTTGCAAGAAAGGCATTT-TTCCCACCAATTTTTGT
1 ATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGC-TTTCTTCCCACCAATTGTTGT
* * * *
64102 AAAGTCTAAGTTCGTGCCCCAAATGCGACAAACATGGATTCT-GCTAGTGATCTTCATTCATTTT
65 AAAGTCTAAGTTCGTGCCTC-AATGAGACAAACATGGATTCTAG-TAATGATCTTCATTCTTTTT
* * * *
64166 CTGATTAGGCCCTATAAACTCATTCTCCTCATTAGGATA
128 GTGATAAGGCACTATAAACACATTCTCCTCATTAGGATA
64205 CACGATATTG
Statistics
Matches: 1438, Mismatches: 136, Indels: 36
0.89 0.08 0.02
Matches are distributed among these distances:
472 4 0.00
473 355 0.25
474 168 0.12
475 93 0.06
476 419 0.29
477 382 0.27
478 17 0.01
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.36
Consensus pattern (474 bp):
ATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTGTTGTA
AAGTCTAAGTTCGTGCCTCAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTG
ATAAGGCACTATAAACACATTCTCCTCATTAGGATAAATGACATTGATGATGTTTTTTGCATGGA
AATCTTTTCTTTGCCTAATTATCCTAAAAATCAAAGTTCATCCCCTGAATAAGATAAGCATCGAT
TCTCGTAATAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTACCTTCATTAGGATAC
ACGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCCCACCGTTTTTGATAGAATCAAAG
TTTGTCTCTTAAATAAGACAAATATAAATACTCATACTAATCCCCAAAATTTTCATTATTAGGCA
CCATAAACATAGTCTTCTC
Found at i:65943 original size:20 final size:20
Alignment explanation
Indices: 65902--65943 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
65892 ATACCCAGAT
* **
65902 GTATCGATACATTTTGCTTA
1 GTATCGATACATTGTGAATA
65922 GTATCGATACATTGTGAATA
1 GTATCGATACATTGTGAATA
65942 GT
1 GT
65944 GTCAATACTG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.29, C:0.12, G:0.19, T:0.40
Consensus pattern (20 bp):
GTATCGATACATTGTGAATA
Found at i:67283 original size:476 final size:476
Alignment explanation
Indices: 66373--70527 Score: 5176
Period size: 476 Copynumber: 8.8 Consensus size: 476
66363 CTCTTGACTT
* * * * *
66373 GTAATAGTCTCGATTCTTTTCAAGATTAGGAAGTCAAAACACATTCCCTTCGTTAGGATACATGG
1 GTAATAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTCGTTAGGATACA-CG
*
66438 A-ATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTC-CTGTCATTTTTCATAGAATCAAAGTT
65 ACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCTC-GTCATTTTTGATAGAATCAAAGTT
* * * ** * *
66501 TGTCTCTTAAATAAGGCAAACATGAATACTCATCCTAATCCCCAATCTTTTCATTATTAAGTACC
129 TGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACC
* * *
66566 ATAAACATAGTCTTCTCATTAAGATACATGATATTGATGCTTTGGTTTCGCCACAAAGGCTTTCT
194 ATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTCT
* * * * *
66631 TTCCA--AA-TTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGGCAAACAAGGATTCTTGTAAAG
259 TCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTTGTAATG
* *
66693 ATCTTCATTCTTTTTGTGATAAGGCACTATAAACACATTCTCCGCATTAGGATAACTAACATTGA
324 ATCTTCATTCTTTTTGTGATAAGGCACTATAAACACATTCTCCGCATTAGGATAAATGACATTGA
*
66758 TGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCAATTATCCTTAAAAT-AAATGTTCATCCCT
389 TGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCAATTATCCTTAAAATCAAA-GTTCATCCCT
* *
66822 TAAATAAGACAAGCATCAATTCTC
453 TGAATAAGACAAGCATCGATTCTC
* * * * *
66846 GTCATAGACTCCATTCTTCTCAAGATTGGGAGGCCGAAAA-ACATTGCCTTCAG-TAGGATACAT
1 GTAATAGTCTCCATTCTTTTCAAGATTGGGAAGCC-AAAACACATTGCCTTC-GTTAGGATACAC
* * * * * *
66909 GTCATTAATGCTTGGGTATCTCAAGAAAAGCTTTTCTTCTCATCGTTTTTGATAGAATCAAAGTT
64 GACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCTCGTCATTTTTGATAGAATCAAAGTT
* * * * *
66974 TGTCTCTTAAGTAAGCCAAATATGAATACCCATACTAATCCCCATTCTTTTTAGGATTAGGCACC
129 TGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACC
* * * *
67039 ATAAACATAGTCTTCTCGTTAGGATACACGATATTGATGCCTTGGTTTCACAACAAAGGTTTTCT
194 ATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTCT
* * * *
67104 ACCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATGGATTCTAGTAATA
259 TCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTTGTAATG
* * *
67169 ATCTTCATTCTTTTTGTGATAAGGCACTATAACCACATTCTCCACATTAGGATAAACGACATTGA
324 ATCTTCATTCTTTTTGTGATAAGGCACTATAAACACATTCTCCGCATTAGGATAAATGACATTGA
* * * **
67234 TAATTTTCTTTTGCATGGAAATGTTTTCTTTGCCCAATTATCGTTAAAATCAAAGTTCATCTGTT
389 TGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCAATTATCCTTAAAATCAAAGTTCATCCCTT
*
67299 GAATAAGACAAGCATCGATTCTT
454 GAATAAGACAAGCATCGATTCTC
*
67322 GTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTCGTTAGGATACACGA
1 GTAATAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTCGTTAGGATACACGA
* * * * *
67387 CATTGATGCTTTGGTGTCTCAGGAAAAGCCTTTCTTAC-CGCCATTTTTCATAAAATCAAAGTTT
66 CATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTT-CTCGTCATTTTTGATAGAATCAAAGTTT
** * * ** *
67451 GTCTCTTAAATAAGACAAACATGAATACTGTTCCTAATCCCCAATCTTTTCATTATGAGGCACCA
130 GTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCA
* * *
67516 TAAACATAGTCTTCTCATTAAGATACAAGATATTGATGCTTTGGTTTCGCCACAAAGGCTTTCTT
195 TAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTCTT
*** * *
67581 CTTTCCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGGCAAACATGGATTCTTGTAAAGA
260 CCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTTGTAATGA
* * *
67646 TCTTTATTCTTTTTGTGATAAGGCACTTTAAACACATTCTCCGCATTAGGATAAATGACATGGAT
325 TCTTCATTCTTTTTGTGATAAGGCACTATAAACACATTCTCCGCATTAGGATAAATGACATTGAT
* *
67711 GATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCAATTATCCTTAAAATCGAAGTTCATCCCTT-
390 GATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCAATTATCCTTAAAATCAAAGTTCATCCCTTG
* *
67775 AATTAAGATAAGCATCGATTATC
455 AA-TAAGACAAGCATCGATTCTC
* * *
67798 ATTATAGTCTCCATTCTTTTCAAGATTGGGAAACCAAAACACATTGCCTTCGTTAGGA-ACCACG
1 GTAATAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTCGTTAGGATA-CACG
* * *
67862 ACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCTTGCCATTTTTGATTGAATCAAAGTTT
65 ACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCTCGTCATTTTTGATAGAATCAAAGTTT
* * * * * * * *
67927 ATCTCTTAAATAAGACAAATATAAATACTCATACTAATTCCCATCCTTTTTAGGGTTTGGCACCA
130 GTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCA
* * *
67992 TAAACATAGTCTTCTCATTAGGATTCACGATATTGATGCTTTGGTTTTGCAACGAAGGCTTTCTT
195 TAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTCTT
**** * * * *
68057 CTTTTCAATTTTTGTAAAGTCTAGGTTCATGCCTCAAATGAGTCAAACATGGACTCTTGTAATGA
260 CCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTTGTAATGA
* * *
68122 TCTTCATTCTTTTTGTGATAAGGCACTATAAAAAAATTCTCCTCATTAGGATAAATGACATTGAT
325 TCTTCATTCTTTTTGTGATAAGGCACTATAAACACATTCTCCGCATTAGGATAAATGACATTGAT
* * * * * **
68187 GA-TTT-TTTTGTACGAAAATATTTTCTTTGCCCTATATTAT--GTAAAATCAAAGTAAATCCCT
390 GATTTTCTTTTGCATGGAAATCTTTTCTTTGCCC-A-ATTATCCTTAAAATCAAAGTTCATCCCT
* * *
68248 TGAATAAGATAAGCATCGATTATT
453 TGAATAAGACAAGCATCGATTCTC
** * * * * * * * * *
68272 GTTCTTGTCTTCATGCTTTTCAAGATTTGGAAGCCAAAACACTTTGCGTTTGTTAAGATACATGA
1 GTAATAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTCGTTAGGATACACGA
* * * * *
68337 CATTGATGCTTTGGTGTCGCAAGAAAAGATTTT-TGTCCCATCATTTTTGATAGAATCAAAGCTT
66 CATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCT-TCTCGTCATTTTTGATAGAATCAAAGTTT
* * * *
68401 GT-TACCTAAATAAGACAAACTTGAATACTCACACTAATCCCCATTCTTTTTAGGATTAGGCACC
130 GTCT-CTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACC
* * ** * *
68465 ATAATCATAGTCTTCTCATTAGGATACAAGATATTGATGCTTTGGTTTCATAACATAGGCTTTCA
194 ATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTCT
* * * * *
68530 TCCTACCAATTTTTG-AAATGTCTAAATTCGTGCGTCAAATGAGACAAACTTAGATTCTTGTAAT
259 TCCCACCAATTTTTGTAAA-GTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTTGTAAT
* * * * *
68594 GATCTTCATTCATTTTGTGATTAGGCAC-AGTAAACACATTCTCCGTATTAAGATAAATGATATT
323 GATCTTCATTCTTTTTGTGATAAGGCACTA-TAAACACATTCTCCGCATTAGGATAAATGACATT
* * * * * * *
68658 GATGGTTTTCCTTTGCATGGTAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCTTTCC
387 GATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCAATTATCCTTAAAATCAAAGTTCATCCC
* *
68723 TTAAATAAGACAAGCATCGTTTCTC
452 TTGAATAAGACAAGCATCGATTCTC
* **
68748 GTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTGCC-TCCATAGGATACACGA
1 GTAATAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTCGTTAGGATACACGA
* * *
68812 CATTGATG-TTTGGATGTCTCAAGAAGAGCTTTT-TTTTCCG-CTATTTTTGGTAGAATCAAAGT
66 CATTGATGCTTTGG-TGTCTCAAGAAAAGCTTTTCTTCT-CGTC-ATTTTTGATAGAATCAAAGT
* * * * * *
68874 TTATCTCTTAAATAAGCCAAACATGAATACTCATACTAATCTCCGTTGTTTTCAGGATTAGGCCC
128 TTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCAC
* * *
68939 CATAAACATAGTCTTCTCATTAGGATACACAACATTGATGCTTTGGTTTCGCAACAAAGGCTTTT
193 CATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTC
* * * *
69004 TTCCCACCAATTATTGTAAAGTGTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGTAAT
258 TTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTTGTAAT
* * *
69069 GATCATCATTCTTTTTGTGATAAGGCACTATAAACACATTCTTCGCGTTAGGATAAATGACATTG
323 GATCTTCATTCTTTTTGTGATAAGGCACTATAAACACATTCTCCGCATTAGGATAAATGACATTG
* * * *
69134 ATAATTTTCTTTTGCATGGAAATCTTTTCTTTACCTAATTATCCTTAAACTCAAAGTTCATCCCT
388 ATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCAATTATCCTTAAAATCAAAGTTCATCCCT
*
69199 TGAATAAGACAAGCATCGATTCTG
453 TGAATAAGACAAGCATCGATTCTC
* *
69223 GTAACAGTCTCCATTCTTTTC----TTGGGAAGCCAAAACACATTGCCTTCGTTAGGATGCACGA
1 GTAATAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTCGTTAGGATACACGA
* * * * *
69284 CATTGACGCTTTGGTGTCTTAAGAAAAGCCTTTCTTCTTGCCATTTTTGATAGAATCAAAGTTTG
66 CATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCTCGTCATTTTTGATAGAATCAAAGTTTG
* * **
69349 TCTCTTAAATAAGACGAACATGAATACTCAT-CTTAATCCCCAATCTTTTCATTATTAGGCACCA
131 TCTCTTAAATAAGACAAACATGAATACTCATAC-TAATCCCCATTCTTTTCAGGATTAGGCACCA
* * *** *
69413 CAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCCCTGTAAAGACTTTCTT
195 TAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTCTT
* * * * *
69478 CCCACCAATTGTTGTAAAGTCTAAGTTCGTGCTTCAATTCAAACAAACATGGATTC-TGTTAATG
260 CCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTTG-TAATG
* * ** *
69542 ATCTTCAATCTTTTTGTGGTAAGGCACTATAAACACATTCTCTTCATTAGGGTAAATGACATTGA
324 ATCTTCATTCTTTTTGTGATAAGGCACTATAAACACATTCTCCGCATTAGGATAAATGACATTGA
** * * *
69607 TGATTTT-TTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCCTTAAAATAAAAGTTCATCTCTT
389 TGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCAATTATCCTTAAAATCAAAGTTCATCCCTT
* *
69671 GAATAAGATAAGTAAT-GATTCTC
454 GAATAAGACAAG-CATCGATTCTC
* * * * *
69694 CTAATAGTCTCCACTCTTTTCAAGATTGGGAAGCCAAAACAGATTGCCTTTGTTAGGATACACCA
1 GTAATAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTCGTTAGGATACACGA
* * * * * *
69759 CATTGCTGCTTTGATGCCTCTAGAAAAGCTTTTCTTCCCATCATTTTTGATAGAATCAAAGTTTG
66 CATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCTCGTCATTTTTGATAGAATCAAAGTTTG
* * * *
69824 TCTCCTAAATAAGACAAATAGGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCTT
131 TCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCAT
* * * *
69889 AAACGTAGTCATCTCATTAGGATACACGATATTGATGCTTCGGTTTCGCAACAAAGGCTCTCTTC
196 AAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTCTTC
*** * * *
69954 TTTCCAATTTTTGTAAAGTCTATGTTCGTGCCTCAATTGAGACAACCATGGATTC-TGTTAATGA
261 CCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTTG-TAATGA
* *
70018 TCTTTATTCTTTTTGTGATAAGGCACTATAAACACATTCTCCGCATTACGATAAATGACATTGAT
325 TCTTCATTCTTTTTGTGATAAGGCACTATAAACACATTCTCCGCATTAGGATAAATGACATTGAT
* *
70083 GAGTTTCTTTTTCATGGAAATCTTTTCTTTGCCCAATTATCCTTAAAATCAAAGTTCATCCCTTG
390 GATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCAATTATCCTTAAAATCAAAGTTCATCCCTTG
*
70148 AATAAGACAAGCATCGATCCTC
455 AATAAGACAAGCATCGATTCTC
* * * * * * *
70170 ATAACAGTCTCCATTCCTTTCAAGATTGGGAAGCCAAAACATATTGACTTCGTTAGGATAAACAA
1 GTAATAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTCGTTAGGATACACGA
* *
70235 CATTGATG-TTTGGGTGTCTCAAGAAAAGCTTTTCTTCTTG-CTGTTTTTGATAGAATCAAAGTT
66 CATTGATGCTTT-GGTGTCTCAAGAAAAGCTTTTCTTCTCGTC-ATTTTTGATAGAATCAAAGTT
* * * * * *
70298 TG--TC-T--A-AGGA-AAACATGAATACTCATAGTAGTCCCCATTCCTTTCAGGATTAGGTATC
129 TGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACC
** * *
70356 ATAAACGA-AGTCTTCTCATTAGGATACACGATATTGATATTTTGGTTTCACAAGAAAGGCCTTT
194 ATAAAC-ATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGG-CTTT
* * * * *
70420 -TTCCCACCAATTTGTGTAAAATCTAAGTTCGTGCCTCATATGCGACAAACATGGATTC-AGCTA
257 CTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTTG-TA
* * *
70483 ATGATCTTCATTCATTTTGTGATTAGGCACTATAAATACATTCTC
321 ATGATCTTCATTCTTTTTGTGATAAGGCACTATAAACACATTCTC
70528 TTAATTAGGA
Statistics
Matches: 3147, Mismatches: 485, Indels: 104
0.84 0.13 0.03
Matches are distributed among these distances:
469 183 0.06
470 6 0.00
471 112 0.04
472 287 0.09
473 232 0.07
474 400 0.13
475 712 0.23
476 1211 0.38
477 4 0.00
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.36
Consensus pattern (476 bp):
GTAATAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTCGTTAGGATACACGA
CATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCTCGTCATTTTTGATAGAATCAAAGTTTG
TCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCAT
AAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTCTTC
CCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTTGTAATGAT
CTTCATTCTTTTTGTGATAAGGCACTATAAACACATTCTCCGCATTAGGATAAATGACATTGATG
ATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCAATTATCCTTAAAATCAAAGTTCATCCCTTGA
ATAAGACAAGCATCGATTCTC
Found at i:70536 original size:158 final size:156
Alignment explanation
Indices: 70373--70692 Score: 351
Period size: 156 Copynumber: 2.0 Consensus size: 156
70363 AAGTCTTCTC
* * ** * *
70373 ATTAGGATACACGATATTGATATTTTGG-TTTCACAAG-AAAGGCCTTTT-TCCCACCAATTTGT
1 ATTAGGATACACGACATTGATACTTTGGCGGT-ACAAGAAAAAGACTTTTGTCCCACC-A--T-T
* * * *
70435 GTAAAATCTAAGTTCGTGCCTCATATGCGACAAACATGGATTC-AGCTAATGATCTTCATTCATT
61 GTAAAATCAAAGGTCGTGCCTCAAATGAGACAAACATGGATTCGAG-TAATGATCTTCATTCATT
* *
70499 TTGTGATTAGGCACTATAAATACATTCTCTTA
125 TTGTGATAAGGCACTATAAACACATTCTCTTA
* * * * *
70531 ATTAGGATACACGACATTTATGCTTTGGCGGTGCAAGAAAAAGATTTTTGTCCCATCATTGTAAA
1 ATTAGGATACACGACATTGATACTTTGGCGGTACAAGAAAAAGACTTTTGTCCCACCATTGTAAA
* * * *
70596 GTCAAAGGTCGTGCCTCAAATGAGACAAACATGGATTCGAGTAATGATGTTCATTCTTTTTGTGG
66 ATCAAAGGTCGTGCCTCAAATGAGACAAACATGGATTCGAGTAATGATCTTCATTCATTTTGTGA
* *
70661 TAAGGCACTATAAACACATTCTTTTC
131 TAAGGCACTATAAACACATTCTCTTA
70687 ATTAGG
1 ATTAGG
70693 GTAAATGACA
Statistics
Matches: 135, Mismatches: 23, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
156 88 0.65
157 3 0.02
158 28 0.21
159 10 0.07
160 6 0.04
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.34
Consensus pattern (156 bp):
ATTAGGATACACGACATTGATACTTTGGCGGTACAAGAAAAAGACTTTTGTCCCACCATTGTAAA
ATCAAAGGTCGTGCCTCAAATGAGACAAACATGGATTCGAGTAATGATCTTCATTCATTTTGTGA
TAAGGCACTATAAACACATTCTCTTA
Found at i:71307 original size:474 final size:473
Alignment explanation
Indices: 70589--72131 Score: 1942
Period size: 474 Copynumber: 3.3 Consensus size: 473
70579 TGTCCCATCA
* * * *
70589 TTGTAAAGTCAAAGGTCGTGCCTCAAATGAGACAAACATGGATTCGAGTAATGATGTTCATTCTT
1 TTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCTT
* ** * * *
70654 TTTGTGGTAAGGCACTATAAACACATTCTTTTCATTAGGGTAAATGACAGTGACGATTTTCTTTT
66 TTTGTGATAAGGCACTATAAACACATTCTCCTCATTAGGATAAATGACATTGATGATTTTCTTTT
* **
70719 GCATGGAAATCTTTTCTTTGCCTTATTTTCCTTAAAAAGAAAGTTCAT-CTGTTGAATAAGACAA
131 GCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCT-TTGAATAAGACAA
* * * * * *
70783 GTATCGATTCTCCTAACAGTCTCTGCTTC-TTTCAAGATAGGGAAGCCAAAACATATTGCCTTCG
195 GCATCGATTCTCATAACAGTCTCT-ATTCTTTTTAAGATTGGGAAGCCAAAACACATTGCCTTCG
* * * * *
70847 TTAGGACACATGGCACTAATGCTTTGATGTCTCAAGAAAAGCTTTTCTTCCCACCATTTTTGATA
259 TTAGGATACATGACATTGATGCTTTG-TGTCTCAAGAAAAGCTTTTCTTCCCACCATTTTTTATA
* *
70912 GAATCAAAGTTTTTCTCTTAAATAAGACAAACAT-ATACTCATACTAATCCCCATTCTTTTAAGG
323 GAATTAAAGTTTTTCTCTTAAATAAGACAAACATAATACTCATACTAATCCCCATTCTTTTTAGG
*
70976 ATTAGGGACCATAAACACAATCTTCTCATTAGGATAGACGATATTGATGCTTTGGTTTCGCAACA
388 ATTAGGGACCATAAACA-AGTCTTCTCATTAGGATAGACGATATTGATGCTTTGGTTTCGCAACA
* * **
71041 TAGGCTTTCTTCTTTCCAATTT
452 AAGGCTTTTTTCCCTCCAATTT
*
71063 TTGTAAAGTCTAAGTTCGTGTCTCAAATGAGACAAACATGGATTACT-GTAATGATCTTCATTCT
1 TTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATT-CTAGTAATGATCTTCATTCT
* * * * *
71127 TGTTGTGATAAGGCACTAAAAACACATTCTCCGCTTTAGGATAAATGACATTCATGATTTTCTTT
65 TTTTGTGATAAGGCACTATAAACACATTCTCCTCATTAGGATAAATGACATTGATGATTTTCTTT
* * *
71192 TGCATGGAAATCTTTTCTTTGCCCAATTATCCTTAAAATCCAAGTTCATCCTTTGAATAAGACAA
130 TGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCTTTGAATAAGACAA
*
71257 GCATCGATTCTCATAACAGTCTCTATTCTTTTTAAGATTGCGAAGCCAAAACACATTGCCTTCGT
195 GCATCGATTCTCATAACAGTCTCTATTCTTTTTAAGATTGGGAAGCCAAAACACATTGCCTTCGT
* ** *
71322 TAGGATACATGACATTGATGCTTTGGTGTTTCAAGAAAAGCTTTTCTTCCTGCCCTTTTTTATAG
260 TAGGATACATGACATTGATGCTTT-GTGTCTCAAGAAAAGCTTTTCTTCCCACCATTTTTTATAG
* * * *
71387 AATTAAAGTTTGTCTCCTAAATAAGACAAACATGAATACTCACACTAGTCCCCATTCTTTTTAGG
324 AATTAAAGTTTTTCTCTTAAATAAGACAAACAT-AATACTCATACTAATCCCCATTCTTTTTAGG
** * * * *
71452 ATTAGACACCATAAACATAGTCTTCTCATTAAGATACACGATATTGATGCTTTGGTTTAGCCACA
388 ATTAGGGACCATAAACA-AGTCTTCTCATTAGGATAGACGATATTGATGCTTTGGTTTCGCAACA
* * *
71517 AAGGCTTTTTTCCCGCTAATTA
452 AAGGCTTTTTTCCCTCCAATTT
* ** *
71539 TTGTAAAGTCCAAGTTTTTGCCTCAAATGAGACAAACATGGATTTTAGTAATGATCTTCATTCTT
1 TTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCTT
* * *
71604 TTTGTGACAAGGCACTATAAACACATT-TGCCTCATTAAGATAAATGATATTGATGATTTTCTTT
66 TTTGTGATAAGGCACTATAAACACATTCT-CCTCATTAGGATAAATGACATTGATGATTTTCTTT
* * * *
71668 TGCATAGAAATCTTTT-TTTGTCCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAATAAGATAA
130 TGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCTTTGAATAAGACAA
* * * * * * * *
71732 GCATTGATTATCATTACAGTTTCCA-TCTTTTTAAGATTGGGAAGCTAAAATACATTGCCTTCAT
195 GCATCGATTCTCATAACAGTCTCTATTCTTTTTAAGATTGGGAAGCCAAAACACATTGCCTTCGT
* * * *
71796 TAGGATACAAGACATTGATGGTTTTGTGTCAT-AGGAAAAGCTTTTCTTTCCACCATTTTTTATA
260 TAGGATACATGACATTGAT-GCTTTGTGTC-TCAAGAAAAGCTTTTCTTCCCACCATTTTTTATA
* * *
71860 GAATTAAAGTTTTTCTGTTAAATAAGACAAACATAAATTCTCATAGTAATCCCCATTCTTTTTAG
323 GAATTAAAGTTTTTCTCTTAAATAAGACAAACAT-AATACTCATACTAATCCCCATTCTTTTTAG
** ** *
71925 GATTAGGCG-CCATAGATGAAGTCTTCTCATTAGGAT-GCACGATATTGATATTTTGGTTTCGTA
387 GATTAGG-GACCATA-AACAAGTCTTCTCATTAGGATAG-ACGATATTGATGCTTTGGTTTCGCA
*
71988 AGAAAGGCTTTTTTCCCTCCAATTT
449 ACAAAGGCTTTTTTCCCTCCAATTT
* * * * * *
72013 TTGTAAAGTCTAAGTTCGTGCCTTAAATGCGATAAA-ATGGATTATACTAATGATCTTCATTCAT
1 TTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCTT
* * * *
72077 TTTGTGATTAGGCACTATAAACACAGTT-T-TTGCATTAGGATACATGATATTGATG
66 TTTGTGATAAGGCACTATAAACACA-TTCTCCT-CATTAGGATAAATGACATTGATG
72132 CTTTAGCTTC
Statistics
Matches: 921, Mismatches: 133, Indels: 31
0.85 0.12 0.03
Matches are distributed among these distances:
472 1 0.00
473 72 0.08
474 547 0.59
475 75 0.08
476 226 0.25
ACGTcount: A:0.30, C:0.18, G:0.15, T:0.37
Consensus pattern (473 bp):
TTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCTT
TTTGTGATAAGGCACTATAAACACATTCTCCTCATTAGGATAAATGACATTGATGATTTTCTTTT
GCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCTTTGAATAAGACAAG
CATCGATTCTCATAACAGTCTCTATTCTTTTTAAGATTGGGAAGCCAAAACACATTGCCTTCGTT
AGGATACATGACATTGATGCTTTGTGTCTCAAGAAAAGCTTTTCTTCCCACCATTTTTTATAGAA
TTAAAGTTTTTCTCTTAAATAAGACAAACATAATACTCATACTAATCCCCATTCTTTTTAGGATT
AGGGACCATAAACAAGTCTTCTCATTAGGATAGACGATATTGATGCTTTGGTTTCGCAACAAAGG
CTTTTTTCCCTCCAATTT
Found at i:72126 original size:157 final size:158
Alignment explanation
Indices: 71952--72248 Score: 425
Period size: 157 Copynumber: 1.9 Consensus size: 158
71942 GAAGTCTTCT
* * * * * *
71952 CATTAGGATGCACGATATTGATATTTTGGTTTCGTAAGAAAGGCTTTTTTCCCTCCAATTTTTGT
1 CATTAGGATACACGATATTGATACTTTAGCTTCGTAACAAAGGCTTTCTTCCCTCCAATTTTTGT
* * * *
72017 AAAGTCTAAGTTCGTGCCTTAAATGCGATAAA-ATGGATTATACTAATGATCTTCATTCATTTTG
66 AAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTATACTAAAGATCTTCATTCATTTTG
72081 TGATTAGGCACTATAAACACAGTTTTTG
131 TGATTAGGCACTATAAACACAGTTTTTG
* * **
72109 CATTAGGATACATGATATTGATGCTTTAGCTTCGTAACAAAGGCTTTCTTCTTTCCAATTTTTGT
1 CATTAGGATACACGATATTGATACTTTAGCTTCGTAACAAAGGCTTTCTTCCCTCCAATTTTTGT
* * * *
72174 AAAGTCTAAGTTCGTGCCTCAAATGAGACAAACTTGGATTCTAGTAAAGATCTTTATTCATTTTG
66 AAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTATACTAAAGATCTTCATTCATTTTG
72239 TGATTAGGCA
131 TGATTAGGCA
72249 TAACAAACAC
Statistics
Matches: 121, Mismatches: 18, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
157 84 0.69
158 37 0.31
ACGTcount: A:0.29, C:0.15, G:0.17, T:0.39
Consensus pattern (158 bp):
CATTAGGATACACGATATTGATACTTTAGCTTCGTAACAAAGGCTTTCTTCCCTCCAATTTTTGT
AAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTATACTAAAGATCTTCATTCATTTTG
TGATTAGGCACTATAAACACAGTTTTTG
Found at i:72287 original size:158 final size:157
Alignment explanation
Indices: 71982--72288 Score: 413
Period size: 158 Copynumber: 1.9 Consensus size: 157
71972 ATATTTTGGT
* * * * *
71982 TTCGTAAGAAAGGCTTTTTTCCCTCCAATTTTTGTAAAGTCTAAGTTCGTGCCTTAAATGCGATA
1 TTCGTAACAAAGGCTTTCTTCCCTCCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACA
* * *
72047 AAATGGATTATACTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACAGTTTTTGCAT
66 AAATGGATTATACTAAAGATCTTCATTCATTTTGTGATTAGGCACTACAAACACAGTTTCTGCAT
* *
72112 TAGGATACATGATATTGATGCTTTAGC
131 TAGGATAAATGACATTGATGCTTTAGC
**
72139 TTCGTAACAAAGGCTTTCTTCTTTCCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACA
1 TTCGTAACAAAGGCTTTCTTCCCTCCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACA
* * * *
72204 AACTTGGATTCTAGTAAAGATCTTTATTCATTTTGTGATTAGGCA-TAACAAACACA-TTCTCCT
66 AA-ATGGATTATACTAAAGATCTTCATTCATTTTGTGATTAGGCACT-ACAAACACAGTT-T-CT
72267 -CATTAGGATAAATGACATTGAT
127 GCATTAGGATAAATGACATTGAT
72289 TATTTTCTTT
Statistics
Matches: 130, Mismatches: 16, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
157 63 0.48
158 66 0.51
159 1 0.01
ACGTcount: A:0.30, C:0.16, G:0.16, T:0.38
Consensus pattern (157 bp):
TTCGTAACAAAGGCTTTCTTCCCTCCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACA
AAATGGATTATACTAAAGATCTTCATTCATTTTGTGATTAGGCACTACAAACACAGTTTCTGCAT
TAGGATAAATGACATTGATGCTTTAGC
Found at i:72316 original size:474 final size:466
Alignment explanation
Indices: 70589--72794 Score: 1442
Period size: 474 Copynumber: 4.6 Consensus size: 466
70579 TGTCCCATCA
* * ** * *
70589 TTGTAAAGTCAAAGGTCGTGCCTCAAATGAGACAAACATGGATTCGAGTAATGATGTTCATTCTT
1 TTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTATACTAATGATCTTCATTC-T
* * * * * * *
70654 TTTGTGGTAAGGCACTATAAACACATTCTTTTCATTAGGGTAAATGACAGTGACGATTTTCTTTT
65 TTTGTGATAAGGCACTATAAACACA-T-TTCTCATTAGGATAAATGATATTGATGATTTGCTTTT
** * * *** * **
70719 GCATGGAAATC-TTTTCTTTGCCTTATTTTCCTTAAAAAGAAAGTTCAT-CTGTTGAATAAGACA
128 GCATACAAAGCTTTTTCTTT-CC-AATTTT--TTAAAATCTAAGTTCATGC-CTCAAATAAGACA
** * * * * * * * *
70782 AGTATCGATTCTC-CTAACAGTCTCTGC-TTC-TTTCAAGATAGGGAAGCCAAAACATATTGCCT
188 AACATGGATTCTCAGTAA-AGTCT-T-CATTCTTTTTAAGATTGGCAA-ACAAAACACATTGCCC
* * * * * * * * * * * *
70844 TCGTTAGGACACATGGCACTAATGCTTTGATGTCTCAAGAAAAGCTTTTCTTCCCACCATTTTTG
249 TCATTAGGATAAATGACATTGATGATTT--TTTTTCATGAAAAGCTTTTCTTTCCACCATTTTTT
*
70909 ATAGAATCAAAGTTTTTCTCTTAAATAAGACAAACAT-ATACTCATACTAATCCCCATTCTTTTA
312 ATAGAATCAAAGTTTTTCTCTTAAATAAGACAAACATAATACTCATACTAATCCCCATTCTTTTT
* *
70973 AGGATTAGG-GACCATAAACACAATCTTCTCATTAGGATAGACGATATTGATGCTTTGGTTTCGC
377 AGGATTAGGCG-CCATAAACACAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGC
* * **
71037 AACATAGGCTTTCTTCTTTCCAATTT
441 AACAAAGGCTTTTTTCCCTCCAATTT
* *
71063 TTGTAAAGTCTAAGTTCGTGTCTCAAATGAGACAAACATGGATTACT-GTAATGATCTTCATTCT
1 TTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTA-TACTAATGATCTTCATTCT
* * * * * *
71127 TGTTGTGATAAGGCACTAAAAACACATTCTCCGCTTTAGGATAAATGACATTCATGATTTTCTTT
65 T-TTGTGATAAGGCACTATAAACACATT-T-CTCATTAGGATAAATGATATTGATGATTTGCTTT
** * * * **
71192 TGCATGGAAATC-TTTTCTTTGCCCAATTATCCTTAAAATCCAAGTTCAT-CCTTTGAATAAGAC
127 TGCATACAAAGCTTTTTCTTT--CCAATT-T-TTTAAAATCTAAGTTCATGCC-TCAAATAAGAC
* * *
71255 AAGCATCGATTCTCA-TAACAGTC-TCTATTCTTTTTAAGATT-GCGAAGCCAAAACACATTGCC
187 AAACATGGATTCTCAGTAA-AGTCTTC-ATTCTTTTTAAGATTGGC-AA-ACAAAACACATTGCC
* * * * * * * *
71317 TTCGTTAGGATACATGACATTGATGCTTTGGTGTTTCAAGAAAAGCTTTTC-TTCCTGCCCTTTT
248 CTCATTAGGATAAATGACATTGATGATTT--TTTTTCATGAAAAGCTTTTCTTTCC-ACCATTTT
* * * * *
71381 TTATAGAATTAAAGTTTGTCTCCTAAATAAGACAAACATGAATACTCACACTAGTCCCCATTCTT
310 TTATAGAATCAAAGTTTTTCTCTTAAATAAGACAAACAT-AATACTCATACTAATCCCCATTCTT
* * * * *
71446 TTTAGGATTAGACACCATAAACATAGTCTTCTCATTAAGATACACGATATTGATGCTTTGGTTTA
374 TTTAGGATTAGGCGCCATAAACACAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTC
* * * *
71511 GCCACAAAGGCTTTTTTCCCGCTAATTA
439 GCAACAAAGGCTTTTTTCCCTCCAATTT
* ** * *
71539 TTGTAAAGTCCAAGTTTTTGCCTCAAATGAGACAAACATGGATTTTAGTAATGATCTTCATTCTT
1 TTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTATACTAATGATCTTCATTC-T
* * *
71604 TTTGTGACAAGGCACTATAAACACATTTGCCTCATTAAGATAAATGATATTGATGATTTTCTTTT
65 TTTGTGATAAGGCACTATAAACACATTT--CTCATTAGGATAAATGATATTGATGATTTGCTTTT
* * * * * ** * *
71669 GCATAGAAATCTTTTT-TTGTCCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAATAAGATAAG
128 GCATACAAAGCTTTTTCTT-TCCAATTTT--TTAAAATCTAAGTTCATGCCTCAAATAAGACAAA
* * * * * * * *
71733 CATTGATTATCATTACAGT-TTCCA-TCTTTTTAAGATTGGGAAGCTAAAATACATTGCCTTCAT
190 CATGGATTCTCAGTAAAGTCTT-CATTCTTTTTAAGATTGGCAAAC-AAAACACATTGCCCTCAT
* * *
71796 TAGGATACAA-GACATTGATGGTTTTGTGTCATAGGAAAAGCTTTTCTTTCCACCATTTTTTATA
253 TAGGATA-AATGACATTGATGATTTTTTTTCAT--GAAAAGCTTTTCTTTCCACCATTTTTTATA
* * * *
71860 GAATTAAAGTTTTTCTGTTAAATAAGACAAACATAAATTCTCATAGTAATCCCCATTCTTTTTAG
315 GAATCAAAGTTTTTCTCTTAAATAAGACAAACAT-AATACTCATACTAATCCCCATTCTTTTTAG
** * ** *
71925 GATTAGGCGCCATAGATGA-AGTCTTCTCATTAGGATGCACGATATTGATATTTTGGTTTCGTAA
379 GATTAGGCGCCATA-AACACAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAA
*
71989 GAAAGGCTTTTTTCCCTCCAATTT
443 CAAAGGCTTTTTTCCCTCCAATTT
* * *
72013 TTGTAAAGTCTAAGTTCGTGCCTTAAATGCGATAAA-ATGGATTATACTAATGATCTTCATTCAT
1 TTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTATACTAATGATCTTCATTC-T
* * * *
72077 TTTGTGATTAGGCACTATAAACACAGTTTTTGCATTAGGATACATGATATTGATGCTTTAGC-TT
65 TTTGTGATAAGGCACTATAAACACA-TTTCT-CATTAGGATAAATGATATTGATGATTT-GCTTT
* * * * *
72141 CGTA-ACAAAGGCTTTCTTCTTTCCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAA
127 TGCATACAAA-GCTTT-TTCTTTCCAATTTTT-TAAAATCTAAGTTCATGCCTCAAATAAGACAA
* * * **
72205 ACTTGGATTCT-AGTAAAGATCTTTATTCATTTTGTGATTAGGCATAAC-AAACACATT-CTCCT
189 ACATGGATTCTCAGTAAAG-TCTTCATTCTTTTTAAGATT-GGCA-AACAAAACACATTGC-CCT
* * * *
72267 CATTAGGATAAATGACATTGATTATTTTCTTTTGCATGAAAATCTTTTCTTTACC-CAATTATCC
250 CATTAGGATAAATGACATTGATGATTTT-TTTT-CATGAAAAGCTTTTCTTT-CCACCATT-T-T
** * * * * * * * *
72331 TTA-A-AATCAAAGTTCATCCCTTGAATAAGATAAGCATCGATTA-TCGTTA-TAGTCTCCATTC
310 TTATAGAATCAAAGTTTTTCTCTTAAATAAGACAAACAT--AATACTC-ATACTAATCCCCATTC
* * * * * * * * *
72392 TTTTCAAGATTTGGAAGCTA-AAACACATTGCCT-TCATTAGGATACAAGACATTGATGCTTTGG
372 TTTTTAGGATTAGG-CGCCATAAACACAGT-CTTCTCATTAGGATACACGATATTGATGCTTTGG
* * * * *
72455 TGTCTCAA-GAAGAGCTTTTCTTCCCACC-GTTT
435 TTTCGCAACAAAG-GCTTTT-TTCCCTCCAATTT
* * * * * ** * *
72487 TTGATAGAA-TCAAAGTTTGT-CTCTTAAATAAGAGAAACATAAATACTCATACTAAT--CCCT-
1 TTG-TA-AAGTCTAAGTTCGTGC-CTCAAATGAGACAAACATGGAT--T-ATACTAATGATCTTC
* * * * * * *
72547 ATTCTTTTCAG-GATTAGGCACCATAAACATAGTTTTCTCATTAGGATACACGATATTAATGCTT
60 ATTCTTTT--GTGATAAGGCACTATAAACACA--TTTCTCATTAGGATAAATGATATTGATGATT
* * * * *
72611 TGGTTTTGCA-ACAAAGGCTTTGTTTTTTCTAATTTTTATAAAGTCTAAGTTCGTGCCTCAAATA
121 TGCTTTTGCATACAAA-GCTTT-TTCTTTCCAATTTTT-TAAAATCTAAGTTCATGCCTCAAATA
* * ** *
72675 AGACAAACATGGATTCT-AGTAATGATCTTCATTCTTTATGTGATAAGGC--ACTATAAACACAT
183 AGACAAACATGGATTCTCAGTAAAG-TCTTCATTCTTTTTAAGAT-TGGCAAAC-A-AAACACAT
*** * *
72737 TTTTCGCATTAGGATAAATGACATTGATGACTTTTTTTTGCATTG-AAATCTTTTCTTT
244 TGCCCTCATTAGGATAAATGACATTGATGA-TTTTTTTT-CA-TGAAAAGCTTTTCTTT
72795 GCCTTATTTT
Statistics
Matches: 1425, Mismatches: 228, Indels: 156
0.79 0.13 0.09
Matches are distributed among these distances:
471 1 0.00
472 19 0.01
473 135 0.09
474 689 0.48
475 117 0.08
476 435 0.31
477 20 0.01
478 1 0.00
479 8 0.01
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.37
Consensus pattern (466 bp):
TTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTATACTAATGATCTTCATTCTT
TTGTGATAAGGCACTATAAACACATTTCTCATTAGGATAAATGATATTGATGATTTGCTTTTGCA
TACAAAGCTTTTTCTTTCCAATTTTTTAAAATCTAAGTTCATGCCTCAAATAAGACAAACATGGA
TTCTCAGTAAAGTCTTCATTCTTTTTAAGATTGGCAAACAAAACACATTGCCCTCATTAGGATAA
ATGACATTGATGATTTTTTTTCATGAAAAGCTTTTCTTTCCACCATTTTTTATAGAATCAAAGTT
TTTCTCTTAAATAAGACAAACATAATACTCATACTAATCCCCATTCTTTTTAGGATTAGGCGCCA
TAAACACAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTT
CCCTCCAATTT
Found at i:72553 original size:633 final size:632
Alignment explanation
Indices: 71451--72770 Score: 1733
Period size: 633 Copynumber: 2.1 Consensus size: 632
71441 TTCTTTTTAG
* * * * * * * * *
71451 GATTAGACACCATAAACATAGTCTTCT-CATTAAGATACACGATATTGATGCTTTGGTTTAGCCA
1 GATTAGGCACTATAAACACAGT-TTTTGCATTAGGATACATGATATTGATGCTTTAGCTTAGCAA
* * **
71515 CAAAGGCTTTTTTCCCGCTAATTATTGTAAAGTCCAAGTTTTTGCCTCAAATGAGACAAACATGG
65 CAAAGGCTTTCTTCCCGCCAATTATTGTAAAGTCCAAGTTCGTGCCTCAAATGAGACAAACATGG
* * * *
71580 ATTTTAGTAATGATCTTCATTCTTTTTGTGACAAGGCACTATAAACACATTTGCCTCATTAAGAT
130 ATTCTAGTAAAGATCTTCATTCATTTTGTGACAAGGCACTACAAACACATTTGCCTCATTAAGAT
* ** * *
71645 AAATGATATTGATGATTTTCTTTTGCATAGAAATCTTTTTTTGTCCTATTTTCCTTAAAATCAAA
195 AAATGACATTGATGATTTTCTTTTGCATAGAAATCTTTTTTTACCCAATTATCCTTAAAATCAAA
* * *
71710 GTTCATCCCTTGAATAAGATAAGCATTGATTATCATTACAGTTTCCATCTTTTTAAGATTGGGAA
260 GTTCATCCCTTGAATAAGATAAGCATCGATTATCATTACAGTCTCCATCTTTTCAAGATTGGGAA
* * * *
71775 GCTAAAATACATTGCCTTCATTAGGATACAAGACATTGATGGTTTTGTGTCATAGGAAAAGCTTT
325 GCTAAAACACATTGCCTTCATTAGGATACAAGACATTGATGCTTTGGTGTCATAAGAAAAGCTTT
* * * * * *
71840 TCTTTCCACCATTTTTTATAGAATTAAAGTTTTTCTGTTAAATAAGACAAACATAAATTCTCATA
390 TCTTCCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATAAATACTCATA
* * * ** *
71905 GTAATCCCCATTCTTTTTAGGATTAGGCGCCATAGATGA-AGTCTTCTCATTAGGATGCACGATA
455 CTAATCCCCATTCTTTTCAGGATTAGGCACCATA-AACATAGTCTTCTCATTAGGATACACGATA
* * * * *
71969 TTGATATTTTGGTTTCGTAAGAAAGGCTTT-TTTCCCTCCAATTTTTGTAAAGTCTAAGTTCGTG
519 TTAATACTTTGGTTTCGCAACAAAGGCTTTGTTT-CCTCCAATTTTTATAAAGTCTAAGTTCGTG
* ** *
72033 CCTTAAATGCGATAAA-ATGGATTATACTAATGATCTTCATTCATTT-TGT
583 CCTCAAATAAGACAAACATGGATTATACTAATGATCTTCATTC-TTTATGT
* *
72082 GATTAGGCACTATAAACACAGTTTTTGCATTAGGATACATGATATTGATGCTTTAGCTTCGTAAC
1 GATTAGGCACTATAAACACAGTTTTTGCATTAGGATACATGATATTGATGCTTTAGCTTAGCAAC
*** * * *
72147 AAAGGCTTTCTTCTTTCCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACTTGGA
66 AAAGGCTTTCTTCCCGCCAATTATTGTAAAGTCCAAGTTCGTGCCTCAAATGAGACAAACATGGA
* ** *
72212 TTCTAGTAAAGATCTTTATTCATTTTGTGATTAGGCA-TAACAAACACATTCT-CCTCATTAGGA
131 TTCTAGTAAAGATCTTCATTCATTTTGTGACAAGGCACT-ACAAACACATT-TGCCTCATTAAGA
*
72275 TAAATGACATTGATTATTTTCTTTTGCAT-GAAAATCTTTTCTTTACCCAATTATCCTTAAAATC
194 TAAATGACATTGATGATTTTCTTTTGCATAG-AAATCTTTT-TTTACCCAATTATCCTTAAAATC
* * *
72339 AAAGTTCATCCCTTGAATAAGATAAGCATCGATTATCGTTATAGTCTCCATTCTTTTCAAGATTT
257 AAAGTTCATCCCTTGAATAAGATAAGCATCGATTATCATTACAGTCTCCA-TCTTTTCAAGATTG
*
72404 GGAAGCTAAAACACATTGCCTTCATTAGGATACAAGACATTGATGCTTTGGTGTC-TCAAGAAGA
321 GGAAGCTAAAACACATTGCCTTCATTAGGATACAAGACATTGATGCTTTGGTGTCAT-AAGAAAA
* *
72468 GCTTTTCTTCCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACATAAATAC
385 GCTTTTCTTCCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATAAATAC
* *
72533 TCATACTAATCCCTATTCTTTTCAGGATTAGGCACCATAAACATAGTTTTCTCATTAGGATACAC
450 TCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACAC
* * ** *
72598 GATATTAATGCTTTGGTTTTGCAACAAAGGCTTTGTTTTTTCTAATTTTTATAAAGTCTAAGTTC
515 GATATTAATACTTTGGTTTCGCAACAAAGGCTTTGTTTCCTCCAATTTTTATAAAGTCTAAGTTC
* *
72663 GTGCCTCAAATAAGACAAACATGGATTCTAGTAATGATCTTCATTCTTTATGT
580 GTGCCTCAAATAAGACAAACATGGATTATACTAATGATCTTCATTCTTTATGT
* * *
72716 GATAAGGCACTATAAACACA-TTTTTCGCATTAGGATAAATGACATTGATGACTTT
1 GATTAGGCACTATAAACACAGTTTTT-GCATTAGGATACATGATATTGATG-CTTT
72771 TTTTTGCATT
Statistics
Matches: 595, Mismatches: 81, Indels: 22
0.85 0.12 0.03
Matches are distributed among these distances:
630 5 0.01
631 192 0.32
632 69 0.12
633 254 0.43
634 71 0.12
635 4 0.01
ACGTcount: A:0.31, C:0.17, G:0.15, T:0.38
Consensus pattern (632 bp):
GATTAGGCACTATAAACACAGTTTTTGCATTAGGATACATGATATTGATGCTTTAGCTTAGCAAC
AAAGGCTTTCTTCCCGCCAATTATTGTAAAGTCCAAGTTCGTGCCTCAAATGAGACAAACATGGA
TTCTAGTAAAGATCTTCATTCATTTTGTGACAAGGCACTACAAACACATTTGCCTCATTAAGATA
AATGACATTGATGATTTTCTTTTGCATAGAAATCTTTTTTTACCCAATTATCCTTAAAATCAAAG
TTCATCCCTTGAATAAGATAAGCATCGATTATCATTACAGTCTCCATCTTTTCAAGATTGGGAAG
CTAAAACACATTGCCTTCATTAGGATACAAGACATTGATGCTTTGGTGTCATAAGAAAAGCTTTT
CTTCCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATAAATACTCATAC
TAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATT
AATACTTTGGTTTCGCAACAAAGGCTTTGTTTCCTCCAATTTTTATAAAGTCTAAGTTCGTGCCT
CAAATAAGACAAACATGGATTATACTAATGATCTTCATTCTTTATGT
Found at i:72691 original size:476 final size:476
Alignment explanation
Indices: 72082--75297 Score: 3666
Period size: 476 Copynumber: 6.9 Consensus size: 476
72072 TTCATTTTGT
* * * * * * * *
72082 GATTAGGCACTATAAACACAGT-TTTTGCATTAGGATACATGATATTGATGCTTTAGCTTCGTAA
1 GATTAGGCACCATAAACATAGTCTTCT-CATTAGGATACACGATATTAATGCTTTGGTTTCGCAA
*
72146 CAAAGGCTTTCTTCTTTCCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACTTGG
65 CAAAGGCTTTCTTCTTTCCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGG
* * *
72211 ATTCTAGTAAAGATCTTTATTCATTTTGTGATTAGGCA-TAACAAACACATTCTCCTCATTAGGA
130 ATTCTAGTAATGATCTTCATTCATTTTGTGATAAGGCACTAACAAACACATTCTCCTCATTAGGA
* * *
72275 TAAATGACATTGATTATTTTCTTTTGCATGAAAATCTTTTCTTTACCCAATTATCCTTAAAATCA
195 TAAATGACATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTATCCTTAAAATCA
* * * * *
72340 AAGTTCATCCCTTGAATAAGATAAGCATCGATTATCGTTATAGTCTCCATTCTTTTCAAGATTTG
260 AAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGG
* * *
72405 GAAGCTAAAACACATTGCCTTCATTAGGATACAAGACATTGATGCTTTGGTGTCTCAAGAAGAGC
325 GAAGCCAAAACACATTGCCTTCGTTAGGATACAAGACATTGATGCTTTGGTGTCTCAAGAAAAGC
* *
72470 TTTTCTTCCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACATAAATACTC
390 TTTTCTTCCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTC
72535 ATACTAATCCCTATTCTTTTCAG
455 ATACTAATCCC-ATTCTTTTCAG
* *
72558 GATTAGGCACCATAAACATAGTTTTCTCATTAGGATACACGATATTAATGCTTTGGTTTTGCAAC
1 GATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTAATGCTTTGGTTTCGCAAC
* * * * *
72623 AAAGGCTTTGTTTTTTCTAATTTTTATAAAGTCTAAGTTCGTGCCTCAAATAAGACAAACATGGA
66 AAAGGCTTTCTTCTTTCCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGA
* * * *
72688 TTCTAGTAATGATCTTCATTC-TTTATGTGATAAGGCACT-ATAAACACATTTTTCGCATTAGGA
131 TTCTAGTAATGATCTTCATTCATTT-TGTGATAAGGCACTAACAAACACATTCTCCTCATTAGGA
* *
72751 TAAATGACATTGATGACTTTT-TTTTGCATTG-AAATCTTTTCTTTGCCTTATTTTCCTTAAAAT
195 TAAATGACATTGATGA-TTTTCTTTTGCA-TGAAAATCTTTTCTTTGCCCTATTATCCTTAAAAT
* * *
72814 CAAAGTTCATCCCTTCAATAAGACAAGCATCGATTCTTGTAACAGTCTCCATTCTTCTCAAGATT
258 CAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATT
* *
72879 GGGAAGCCAAAACACATTGCATTCGTTAGGATACAAGACATTGATGCTTTGGTGTCTCAAGCAAA
323 GGGAAGCCAAAACACATTGCCTTCGTTAGGATACAAGACATTGATGCTTTGGTGTCTCAAGAAAA
* * * * * *
72944 GCTTTTCTTCCC-GCGATGTTAGATGGAATCAAAGTTTGTCTCTTAAATAAGATAAACACGAATA
388 GCTTTTCTTCCCACCG-TTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATA
* * ** *
73008 CACATGCTAATTCTTATTCTTTTCAA
452 CTCATACTAA-TCCCATTCTTTTCAG
* * * * * * *
73034 GACTATGCACTATAAACATAGTCTTCTCATTTGGAAACACGATATTGATGCTTTGGTTTCGTAAC
1 GATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTAATGCTTTGGTTTCGCAAC
* *** * * * *
73099 AGAGGCTTTCTTCCCACCAATTGTTGTAAAGTCTAAGTTCATGCCTCAAATGAGATAAACGTGGA
66 AAAGGCTTTCTTCTTTCCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGA
* * * * *
73164 TTCTAGTAATGATGTTCATTCTTTTTGTGACAAGGCACT-ATAAACACATTCTCCTCATTAGGGT
131 TTCTAGTAATGATCTTCATTCATTTTGTGATAAGGCACTAACAAACACATTCTCCTCATTAGGAT
* * * * * *
73228 AAATGACATTGATGATTTTCGTTTGCATGGAAATATTTTCTTTGCCTTATTTTCCTTAAAATGAA
196 AAATGACATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTATCCTTAAAATCAA
* * * * *** * * *
73293 AGTTAATCCCCTAAATACGATTTGTATCGATTCTCCTAACAGTCTCCACTCTTTTCAAGATTGGG
261 AGTTCATCCCTTGAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGG
* * * * *
73358 AAGCTAAAACACATTGCCTTCGTTACGATACACA-ACATTGATACTTTGATGTCTCTAGAAAAGC
326 AAGCCAAAACACATTGCCTTCGTTAGGATACA-AGACATTGATGCTTTGGTGTCTCAAGAAAAGC
* * *
73422 TTTTCTTCTCACTGTTTTTAATAGAATCAAA----G-----T---T----------TG-ATACTC
390 TTTTCTTCCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTC
* *
73464 ACACTAATCCCATTCTTTTTAG
455 ATACTAATCCCATTCTTTTCAG
* * * * * *
73486 GATTAGGCACTATAAACATAGTCTTCTTATTATGATACAAGATATTGATGCTTTGGATTCGCAAC
1 GATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTAATGCTTTGGTTTCGCAAC
* *
73551 AAAGGCTTTCTTCTTTCCAATTTTTCTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACTTGGA
66 AAAGGCTTTCTTCTTTCCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGA
* * *
73616 TTCTAGTAAAGATCTTCATTTATTTTGTGACT-AGACA-TAACAAACACATTCTCCTCATTAGGA
131 TTCTAGTAATGATCTTCATTCATTTTGTGA-TAAGGCACTAACAAACACATTCTCCTCATTAGGA
* *
73679 TAAATGACATTGATGATTTTCTTTTGCATGAAAATGTTTTCTTTGCCCAATTAT--TTAAAATCA
195 TAAATGACATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTATCCTTAAAATCA
* *
73742 AAGTTCATCCCTTGAATAAGA-AGAGCATCGATTATCGTTACAGTCTCCATTCTTTTCAAGATTG
260 AAGTTCATCCCTTGAATAAGACA-AGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTG
* *
73806 GGAAGCCAAAACACATTGCCTTCGTTAGGATACAAGACATTGTTGCTTTGATGTCTCAAGAAAAG
324 GGAAGCCAAAACACATTGCCTTCGTTAGGATACAAGACATTGATGCTTTGGTGTCTCAAGAAAAG
* * ** * * *
73871 CTTTTTTTCTCGTCGTTTTCGATAGAATCAAAGTTTGTCTCTTAAATAGGACAAACATGAATACA
389 CTTTTCTTCCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACT
*
73936 CATACTAATCCCCATTCATTTCAG
454 CATACTAAT-CCCATTCTTTTCAG
* * *
73960 GATTAGG---------C--A-----C-C------AT--A--A-A-TAATGCTTTGATTTCACAAG
1 GATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTAATGCTTTGGTTTCGCAAC
**
73996 AAAGGCTTTCTTCTTTCCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATTTGGA
66 AAAGGCTTTCTTCTTTCCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGA
* *
74061 TTCTAGTAAAGATCTTCATTCATTTTGTGATTAGGCA-TAACAAACACATTCTCCTCATTAGGAT
131 TTCTAGTAATGATCTTCATTCATTTTGTGATAAGGCACTAACAAACACATTCTCCTCATTAGGAT
* *
74125 AAATGACATTGATGATTTT-TTTTGCATCAAAATCTTTTCTTTGCCCAATTATCCTTAAAATCAA
196 AAATGACATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTATCCTTAAAATCAA
** * *
74189 AGTTCATCCCTTGAATAAGATGAGCATCGATTATCGTTACAGTCTCCATTCTTTTCAAGATTGGG
261 AGTTCATCCCTTGAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGG
* *
74254 AAGCCAAAACACA-T---TT-GTTAGGTTACAAGACATTGTTGCTTTGGTGTCTCAAGAAAAGCT
326 AAGCCAAAACACATTGCCTTCGTTAGGATACAAGACATTGATGCTTTGGTGTCTCAAGAAAAGCT
* * * * * * *
74314 TTTTTTCTCGCCGTTTTTGATAGAATCAAAATTTGTCTCTTAAATAGGATAAACATGAATACGCA
391 TTTCTTCCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCA
*
74379 TACTAATCTCCATTCATTTCAG
456 TACTAATC-CCATTCTTTTCAG
* * * *
74401 GATTAGGCACCATAAACATAGTGTTCTCATTTGGATACACAATATTAATGCTTTGGTTTCGCAAT
1 GATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTAATGCTTTGGTTTCGCAAC
*
74466 AAAGGCTTTCCTCTTTCCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGA
66 AAAGGCTTTCTTCTTTCCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGA
* * * * * *
74531 TTCTAGTAATGACCTTTATTCTTTTTGGGATAAGGCACT-AGAAACACATT-TTCTACATTAGGA
131 TTCTAGTAATGATCTTCATTCATTTTGTGATAAGGCACTAACAAACACATTCTCCT-CATTAGGA
* * * * ** * * *
74594 TAAATGATATTGATGATTTTTTTTTTCTGTGGTAATCTTTTCTTTGCCCTATTTTCCATAAAATT
195 TAAATGACATTGATGATTTTCTTTTGC-ATGAAAATCTTTTCTTTGCCCTATTATCCTTAAAATC
* * * * * * * *
74659 AACA-TTCAACCCTTAAAGAAGACAAGCATCTATTCTTGTAATAGTCTCCATGCATTTCAAGATT
259 AA-AGTTCATCCCTTGAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATT
* ** * * * *
74723 GGGAGGCCAAAACACATACCCTTCATTAGGATACATGACATTGATGCTTTGGTAT-TGCAAGAAT
323 GGGAAGCCAAAACACATTGCCTTCGTTAGGATACAAGACATTGATGCTTTGGTGTCT-CAAGAAA
* * * *
74787 AGCTTTTTTTCCTACCGTTTTTGATAGAATCAAAGTTTGTCTCTTCAATAAGACAAA-TTGAATA
387 AGCTTTTCTTCCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATA
*
74851 CTC--ACTAATCCCCAATCTTTTCAG
452 CTCATACTAAT-CCCATTCTTTTCAG
* * * * **
74875 GATTATGCACCATAAACATAGTCTTCTCAATAGGATACATGATATTGAA-GTTTTCATTTCGCAA
1 GATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATT-AATGCTTTGGTTTCGCAA
*** * *
74939 CAAAGGCTTTCTTCCCACCAATTGTTGTGAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGG
65 CAAAGGCTTTCTTCTTTCCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGG
* * *
75004 ATTCTAGTAATGATCTTCATTCTTTTTGGGATAAGGCACTAAC-AACACATTCTCCGCATTAGGA
130 ATTCTAGTAATGATCTTCATTCATTTTGTGATAAGGCACTAACAAACACATTCTCCTCATTAGGA
* * * * * * *
75068 TAAATGACATTGATGATTTCCTTTTGCGTGGAAATCTTTTTTTTACCTTATT-TCCTTAAAATTA
195 TAAATGACATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTATCCTTAAAATCA
* * * * ** * *
75132 AGGTGCTTCCCATGAATAAGACAAGCATAAATTCTCATAACAGTCTCCATTCTTTTCAAGATTAG
260 AAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGG
* *
75197 GAAGCGAAAACACATTGCCTTCGTTAGGATACAAGACATTGATGCTTTGGTGT-TGCAAAAAAAG
325 GAAGCCAAAACACATTGCCTTCGTTAGGATACAAGACATTGATGCTTTGGTGTCT-CAAGAAAAG
* ** *
75261 CTTTTCTTTCTGCCATTTTTGATAGAATCAAAGTTTG
389 CTTTTCTTCCCACCGTTTTTGATAGAATCAAAGTTTG
75298 GCACCATAAA
Statistics
Matches: 2341, Mismatches: 309, Indels: 184
0.83 0.11 0.06
Matches are distributed among these distances:
440 1 0.00
441 129 0.06
442 2 0.00
444 32 0.01
445 158 0.07
446 87 0.04
447 1 0.00
449 2 0.00
450 145 0.06
451 3 0.00
452 224 0.10
453 10 0.00
454 2 0.00
457 1 0.00
458 2 0.00
459 1 0.00
462 1 0.00
463 1 0.00
464 3 0.00
465 1 0.00
466 1 0.00
467 1 0.00
468 1 0.00
469 4 0.00
470 147 0.06
471 6 0.00
472 245 0.10
473 34 0.01
474 223 0.10
475 17 0.01
476 757 0.32
477 99 0.04
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (476 bp):
GATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTAATGCTTTGGTTTCGCAAC
AAAGGCTTTCTTCTTTCCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGA
TTCTAGTAATGATCTTCATTCATTTTGTGATAAGGCACTAACAAACACATTCTCCTCATTAGGAT
AAATGACATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTATCCTTAAAATCAA
AGTTCATCCCTTGAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGG
AAGCCAAAACACATTGCCTTCGTTAGGATACAAGACATTGATGCTTTGGTGTCTCAAGAAAAGCT
TTTCTTCCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCA
TACTAATCCCATTCTTTTCAG
Found at i:72732 original size:158 final size:155
Alignment explanation
Indices: 70975--73225 Score: 580
Period size: 159 Copynumber: 14.2 Consensus size: 155
70965 TTCTTTTAAG
* * * * *
70975 GATTAGGGACCATAAACACAATCTTCTCATTAGGATAGACGATATTGATGCTTTGGTTTCGCAAC
1 GATTAGGCACTATAAACAC-ATTTTCTCATTAGGATACACGATATTGATGCTTTGGTTTTGCAAC
* * * * * *
71040 ATAGGCTTTCTTCTTTCCAATTTTTGTAAAGTCTAAGTTCGTGTCTCAAATGAGACAAACATGGA
65 AAAGGCTTT-TTTTTTCCAATTTTTATAAAGTCTAAGTTCGTGCCTTAAATAAGACAAACATGGA
71105 TTACT-GTAATGATCTTCATTCTTGTTGT
129 TT-CTAGTAATGATCTTCATTCTT-TTGT
* * * * * * * * * * ** *
71133 GATAAGGCACTAAAAACACATTCTCCGCTTTAGGATAAATGACATTCATGATTTTCTTTTGCATG
1 GATTAGGCACTATAAACACATT-TTCTCATTAGGATACACGATATTGATGCTTTGGTTTTGCA-A
* * ** * * * *
71198 GAAA-TCTTTTCTTTGCCCAATTATCCTTA-AAA-TCCAAGTTCAT-CCTTTGAATAAGACAAGC
64 CAAAGGCTTTT-TTTTTCCAATT-T--TTATAAAGTCTAAGTTCGTGCC-TTAAATAAGACAAAC
* *
71259 ATCGATTCTCA-TAA-CAGTC-TCTATTCTTTT-T
124 ATGGATTCT-AGTAATGA-TCTTC-ATTCTTTTGT
* * ** * * *
71290 AAGATT-GCGAAGCCA-AAACACATTGCCTTCGTTAGGATACATGACATTGATGCTTTGGTGTTT
1 --GATTAG-GCA-CTATAAACACATTTTC-TCATTAGGATACACGATATTGATGCTTTGGT-TTT
* * * * ** * *
71353 -CAAGAAAAGCTTTTCTTCCTGCCCTTTTTTATAGAA-T-TAAAGTTTGT-CTCCTAAATAAGAC
60 GCAACAAAGGCTTTT-TT-TTTCCAATTTTTATA-AAGTCT-AAGTTCGTGC-CTTAAATAAGAC
* * * * **
71414 AAACATGAATACTCA-CACT-AGTCCCCATTCTTTT-T
120 AAACATGGATTCT-AGTAATGA-TCTTCATTCTTTTGT
* * * * * * *
71449 AGGATTAGACACCATAAACATAGTCTTCTCATTAAGATACACGATATTGATGCTTTGGTTTAGCC
1 --GATTAGGCACTATAAACACA-TTTTCTCATTAGGATACACGATATTGATGCTTTGGTTTTGCA
** * * * ** * *
71514 ACAAAGGC-TTTTTTCCCGCTAATTATTGTAAAGTCCAAGTTTTTGCCTCAAATGAGACAAACAT
63 ACAAAGGCTTTTTTTTTC-C-AATTTTTATAAAGTCTAAGTTCGTGCCTTAAATAAGACAAACAT
*
71578 GGATTTTAGTAATGATCTTCATTCTTTTTGT
126 GGATTCTAGTAATGATCTTCATTC-TTTTGT
** * * * * * **
71609 GACAAGGCACTATAAACACATTTGCCTCATTAAGATAAATGATATTGATGATTTTCTTTTGCATA
1 GATTAGGCACTATAAACACATTT-TCTCATTAGGATACACGATATTGATGCTTTGGTTTTGCA-A
* * * * * * * * * * * *
71674 GAAA-TCTTTTTTTGTCCTATTTTCCT-TAAAATCAAAGTTCATCCCTTGAATAAGATAAGCATT
64 CAAAGGCTTTTTTTTTCCAATTTT--TATAAAGTCTAAGTTCGTGCCTTAAATAAGACAAACATG
* *
71737 GATTATCATTACA-G-T-TTCCA-TCTTTT-T
127 GATTCT-AGTA-ATGATCTT-CATTCTTTTGT
* * * ** * * * * *
71764 AAGATTGGGAAGCTA-AAATACATTGCCTTCATTAGGATACAAGACATTGATGGTTTTG-TGT-C
1 --GATTAGGCA-CTATAAACACATTTTC-TCATTAGGATACACGATATTGATGCTTTGGTTTTGC
* * * * * *
71826 ATAGGAAAAGC-TTTTCTTTCCACCATTTTTTATAGAA-T-TAAAGTT-TTTCTGTTAAATAAGA
62 A-A-CAAAGGCTTTTTTTTTCCA--A-TTTTTATA-AAGTCT-AAGTTCGTGC-CTTAAATAAGA
** * * **
71887 CAAACATAAATTCTCA-TAGTAATCCCCATTCTTTT-T
119 CAAACATGGATTCT-AGTAATGATCTTCATTCTTTTGT
* * ** * * ** * *
71923 AGGATTAGGCGCCATAGATGA-AGTCTTCTCATTAGGATGCACGATATTGATATTTTGGTTTCGT
1 --GATTAGGCACTATA-AACACA-TTTTCTCATTAGGATACACGATATTGATGCTTTGGTTTTGC
* ** * ** *
71987 AAGAAAGGCTTTTTTCCCTCCAATTTTTGTAAAGTCTAAGTTCGTGCCTTAAATGCGATAAA-AT
62 AACAAAGGCTTTTTT-TTTCCAATTTTTATAAAGTCTAAGTTCGTGCCTTAAATAAGACAAACAT
* *
72051 GGATTATACTAATGATCTTCATTCATTTTGT
126 GGATTCTAGTAATGATCTTCATTC-TTTTGT
* * * * *
72082 GATTAGGCACTATAAACACAGTTTT-TGCATTAGGATACATGATATTGATGCTTTAGCTTCGTAA
1 GATTAGGCACTATAAACACA-TTTTCT-CATTAGGATACACGATATTGATGCTTTGGTTTTGCAA
* * * * *
72146 CAAAGGCTTTCTTCTTTCCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACTTGG
64 CAAAGGCTTT-TTTTTTCCAATTTTTATAAAGTCTAAGTTCGTGCCTTAAATAAGACAAACATGG
* *
72211 ATTCTAGTAAAGATCTTTATTCATTTTGT
128 ATTCTAGTAATGATCTTCATTC-TTTTGT
* * * * * ** ** *
72240 GATTAGGCA-TAACAAACACATTCTCCTCATTAGGATAAATGACATTGATTATTTTCTTTTGCAT
1 GATTAGGCACT-ATAAACACATT-TTCTCATTAGGATACACGATATTGATGCTTTGGTTTTGCAA
* ** ** * * * * * *
72304 GAAAATCTTTTCTTTACCCAATTATCCTTA-AAA-TCAAAGTTCATCCCTTGAATAAGATAAGCA
64 CAAAGGCTTTT-TTTTTCCAATT-T--TTATAAAGTCTAAGTTCGTGCCTTAAATAAGACAAACA
* * * * * **
72367 TCGATTATCGTTAT-AGTCTCCATTCTTTTCAA
125 TGGATTCTAGTAATGA-TCTTCATTCTTTT-GT
* * ** * * *
72399 GATTTGGAAGCTA-AAACACATTGCCTTCATTAGGATACAAGACATTGATGCTTTGGTGTCT-CA
1 GATTAGGCA-CTATAAACACATTTTC-TCATTAGGATACACGATATTGATGCTTTGGT-TTTGCA
* * * * * * *
72462 A-GAAGAGC-TTTTCTTCCCACCGTTTTTGATAGAA-TCAAAGTTTGT-CTCTTAAATAAGAGAA
63 ACAAAG-GCTTTTTTTTTCCA--ATTTTT-ATA-AAGTCTAAGTTCGTGC-CTTAAATAAGACAA
** * * * *
72523 ACATAAATACTCA-TACTAATC-CCTATTCTTTTCAG-
122 ACATGGATTCT-AGTAATGATCTTC-ATTCTTTT--GT
* * *
72558 GATTAGGCACCATAAACATAGTTTTCTCATTAGGATACACGATATTAATGCTTTGGTTTTGCAAC
1 GATTAGGCACTATAAACACA-TTTTCTCATTAGGATACACGATATTGATGCTTTGGTTTTGCAAC
* *
72623 AAAGGCTTTGTTTTTTCTAATTTTTATAAAGTCTAAGTTCGTGCCTCAAATAAGACAAACATGGA
65 AAAGGCTTT-TTTTTTCCAATTTTTATAAAGTCTAAGTTCGTGCCTTAAATAAGACAAACATGGA
72688 TTCTAGTAATGATCTTCATTCTTTATGT
129 TTCTAGTAATGATCTTCATTCTTT-TGT
* * * * * *
72716 GATAAGGCACTATAAACACATTTTTCGCATTAGGATAAATGACATTGATGACTTT-TTTTTGCAT
1 GATTAGGCACTATAAACACA-TTTTCTCATTAGGATACACGATATTGATG-CTTTGGTTTTGCA-
** * * * * * * * * * *
72780 TGAAA-TCTTTTCTTTGCCTTATTTTCCT-TAAAATCAAAGTTCATCCCTTCAATAAGACAAGCA
63 ACAAAGGCTTTTTTTTTCC-AATTTT--TATAAAGTCTAAGTTCGTGCCTTAAATAAGACAAACA
* * * * ***
72843 TCGATTCTTGTAA-CAGTCTCCATTCTTCTCAA
125 TGGATTCTAGTAATGA-TCTTCATTCTT-TTGT
* * * * * * * *
72875 GATTGGGAAGCCA-AAACACA-TTGCATTCGTTAGGATACAAGACATTGATGCTTTGGTGTCT-C
1 GATTAGGCA-CTATAAACACATTTTC--TCATTAGGATACACGATATTGATGCTTTGGT-TTTGC
* ** * ** * * * *
72937 AAGCAAA-GCTTTTCTTCCCGCGATGTTAGATGGAA-TCAAAGTTTGT-CTCTTAAATAAGATAA
62 AA-CAAAGGCTTTTTTTTTC-CAAT-TTTTAT-AAAGTCTAAGTTCGTGC-CTTAAATAAGACAA
* * * * **
72999 ACACGAATACACATGCTAAT--TCTT-ATTCTTTTCAA
122 ACATGGATTC-TA-G-TAATGATCTTCATTCTTTT-GT
* * * * * * * *
73034 GACTATGCACTATAAACATAGTCTTCTCATTTGGAAACACGATATTGATGCTTTGGTTTCGTAAC
1 GATTAGGCACTATAAACACA-TTTTCTCATTAGGATACACGATATTGATGCTTTGGTTTTGCAAC
* **** * * * * * * *
73099 AGAGGCTTTCTTCCCACCAATTGTTGTAAAGTCTAAGTTCATGCCTCAAATGAGATAAACGTGGA
65 AAAGGCTTT-TTTTTTCCAATTTTTATAAAGTCTAAGTTCGTGCCTTAAATAAGACAAACATGGA
*
73164 TTCTAGTAATGATGTTCATTCTTTTTGT
129 TTCTAGTAATGATCTTCATTC-TTTTGT
** *
73192 GACAAGGCACTATAAACACATTCTCCTCATTAGG
1 GATTAGGCACTATAAACACATT-TTCTCATTAGG
73226 GTAAATGACA
Statistics
Matches: 1517, Mismatches: 424, Indels: 304
0.68 0.19 0.14
Matches are distributed among these distances:
155 9 0.01
156 28 0.02
157 213 0.14
158 553 0.36
159 631 0.42
160 61 0.04
161 19 0.01
162 3 0.00
ACGTcount: A:0.30, C:0.18, G:0.15, T:0.37
Consensus pattern (155 bp):
GATTAGGCACTATAAACACATTTTCTCATTAGGATACACGATATTGATGCTTTGGTTTTGCAACA
AAGGCTTTTTTTTTCCAATTTTTATAAAGTCTAAGTTCGTGCCTTAAATAAGACAAACATGGATT
CTAGTAATGATCTTCATTCTTTTGT
Found at i:75593 original size:158 final size:158
Alignment explanation
Indices: 75317--75644 Score: 410
Period size: 158 Copynumber: 2.1 Consensus size: 158
75307 ACAAAGTCTT
* * * *
75317 CTCATTAGGATACACGATATTGATGTTTTGGTTTTGCGAGAAACGCATTTTTCCCACCAATTTTT
1 CTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAACGCATTTTTCCCACCAATTTTT
* * * ** *
75382 GAAAAGTCTAAGTTCGTGCCTCAAATGTGACATATGTGGATTCTACTAATGATCTTCATTCATTT
66 GAAAAGTCTAAGTTCCTGCCTCAAATGAGACAAACATAGATTCTACTAATGATCTTCATTC-TTT
* * *
75447 TT-TGGTTAGGCACTACAAACATATTCTC
130 TTGTGATAAGGCACTACAAACACATTCTC
* * * *
75475 CTCATTAGGATACTCGATTTTGATGCTTTGGTTTCGCAACAAAGGC-TTTCTTCCCACTAATTTT
1 CTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAACGCATTT-TTCCCACCAATTTT
* * *
75539 TGTAAAG-CTTAAGTTCCTGCCTCAAATGAGACAAACATAGATTCTAGTATTGATCTTCATTCTT
65 TGAAAAGTC-TAAGTTCCTGCCTCAAATGAGACAAACATAGATTCTACTAATGATCTTCATTCTT
* *
75603 TTTGTGATAATGCACTATAAACACATTCTC
129 TTTGTGATAAGGCACTACAAACACATTCTC
75633 CTCATTAGGATA
1 CTCATTAGGATA
75645 AATAACATTG
Statistics
Matches: 145, Mismatches: 22, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
157 9 0.06
158 136 0.94
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.38
Consensus pattern (158 bp):
CTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAACGCATTTTTCCCACCAATTTTT
GAAAAGTCTAAGTTCCTGCCTCAAATGAGACAAACATAGATTCTACTAATGATCTTCATTCTTTT
TGTGATAAGGCACTACAAACACATTCTC
Found at i:75656 original size:158 final size:158
Alignment explanation
Indices: 75297--75666 Score: 388
Period size: 158 Copynumber: 2.3 Consensus size: 158
75287 ATCAAAGTTT
* * * * * * * * *
75297 GGCACCATAAACAAAGTCTTCTCATTAGGATACACGATATTGATGTTTTGGTTTTGCGAGAAACG
1 GGCACTATAAACAAATTCTCCTCATTAGGATAAATGATATTGATGATTTGGTTTCGCAACAAACG
* * * ** *
75362 CATTTTTCCCACCAATTTTTGAAAAGTCTAAGTTCGTGCCTCAAATGTGACATATGTGGATTCTA
66 CATTTTTCCCACCAATTTTTGAAAAGTCTAAGTTCCTGCCTCAAATGAGACAAACATAGATTCTA
* *
75427 CTAATGATCTTCATTCATTTTTTGGTTA
131 CTAATGATCTTCATTCATTTTTTGATAA
* * * * * *
75455 GGCACTACAAACATATTCTCCTCATTAGGAT-ACTCGATTTTGATGCTTTGGTTTCGCAACAAAG
1 GGCACTATAAACAAATTCTCCTCATTAGGATAAAT-GATATTGATGATTTGGTTTCGCAACAAAC
* *
75519 GC-TTTCTTCCCACTAATTTTTGTAAAG-CTTAAGTTCCTGCCTCAAATGAGACAAACATAGATT
65 GCATTT-TTCCCACCAATTTTTGAAAAGTC-TAAGTTCCTGCCTCAAATGAGACAAACATAGATT
* *
75582 CTAGTATTGATCTTCATTC-TTTTTGTGATAA
128 CTACTAATGATCTTCATTCATTTTT-TGATAA
* * * * *
75613 TGCACTATAAACACATTCTCCTCATTAGGATAAATAACATTGATGATTTTGTTT
1 GGCACTATAAACAAATTCTCCTCATTAGGATAAATGATATTGATGATTTGGTTT
75667 TGTACGAAAA
Statistics
Matches: 172, Mismatches: 35, Indels: 10
0.79 0.16 0.05
Matches are distributed among these distances:
157 9 0.05
158 161 0.94
159 2 0.01
ACGTcount: A:0.29, C:0.19, G:0.15, T:0.38
Consensus pattern (158 bp):
GGCACTATAAACAAATTCTCCTCATTAGGATAAATGATATTGATGATTTGGTTTCGCAACAAACG
CATTTTTCCCACCAATTTTTGAAAAGTCTAAGTTCCTGCCTCAAATGAGACAAACATAGATTCTA
CTAATGATCTTCATTCATTTTTTGATAA
Found at i:76547 original size:473 final size:472
Alignment explanation
Indices: 75453--76615 Score: 1301
Period size: 473 Copynumber: 2.5 Consensus size: 472
75443 ATTTTTTGGT
* * * * * * *
75453 TAGGCACTACAAACATATTCTCCTCATTAGGATACTCGATTTTGATGCTTTGGTTTCGCAACAAA
1 TAGGCACCACAAACATAGTCTTCTCACTAGGATACACGATATTGATGCTTTGGTTTCACAACAAA
* * *
75518 GGCTTTCTTCCCACTAATTTTTGTAAAG-CTTAAGTTCCTGCCTC-AAATGAGACAAACAT-AGA
66 GGCTTTCTTCCCACCAATTTTTGTAAAGTC-TAAGTTCATACCTCTAAATGAGACAAACATGA-A
* * * *
75580 TTCTAGTATTGATCTTCATTCTTTTTGTGATAATGCACTATAAACACATTCTCCTCATTAGGATA
129 TTCTAGTAATG-TCTTCATTCATTTTGTGATTA-GCACTATAAACACATTCTTCTCATTAGGATA
* * *
75645 AATAACATTGATGATTTTGTTTTGTACGAAAATCTTTTCTTTACCCTATTTTCCTTAAAATCAAA
192 AATGATATTGATGATTTTGTTTTCTACGAAAATCTTTTCTTTACCCTATTTTCCTTAAAATCAAA
* * * * * *
75710 GTTCTTCCCTTGACTAAGATAAGCATCGATTATCCTTACAGTCTCCATTCTTTTCAAGATTTAGA
257 G-T-TTCCCTTAAATAAGACAAGCATCAATTATCATAACAGTCTCCATTCTTTTCAAGATTTAGA
* * ** *
75775 AGCCAAAACACATTGCATTTGTTAGGATACACGACATTGATGCTTTGGTATCATAAGAAAAGATT
320 AACCAAAACACATTCCATTCATTAGGATACACGACATTGATGCTTTGGTATCACAAGAAAAGATT
* * * * *
75840 TTTGTGCCACGTTTTTTATAGAATCCATGTTTGTCTCTTAAGTAAGACAAACATGAATACTCACA
385 TTTGTGCCACGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATACTCACA
* *
75905 CTGATCCCCATTTCTTTTAGGAT
450 CTAATCCCCATTTCTTTTAGGAC
* * * *
75928 TAGGCACCATAAACATAGTCTTCTCATTAGGATGCATGATATTGATGCTTTGGTTTCACAACAAA
1 TAGGCACCACAAACATAGTCTTCTCACTAGGATACACGATATTGATGCTTTGGTTTCACAACAAA
** * * * * ** *
75993 GGCTTTCTTCCTGCTAATTTTTGTAAATTCTAAGTTCATGCCTCT-AATGAGATAAAGGTGGATT
66 GGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATACCTCTAAATGAGACAAACATGAATT
* * * * *
76057 CCAGTAATTATCTTCATTCATTTTGTGATTAGACACAATAAACACATTCTTCTTATTTGGATAAA
131 CTAGTAA-TGTCTTCATTCATTTTGTGATTAG-CACTATAAACACATTCTTCTCATTAGGATAAA
*
76122 TGATATTGATGA-TTT-TTTTCTACATGGAAATCTTTTCTTTACCCTATTTTCCTTAAAATCAAA
194 TGATATTGATGATTTTGTTTTCTAC--GAAAATCTTTTCTTTACCCTATTTTCCTTAAAATCAAA
*
76185 G-TTCCCTTAAATAAGACAAGCATCAATTCTCATAACAGTCTCCATTCTTTTCAAGA-TTAGGAA
257 GTTTCCCTTAAATAAGACAAGCATCAATTATCATAACAGTCTCCATTCTTTTCAAGATTTA-GAA
* * * * * *
76248 ACCAAAACACATTCCCTTCATTAGGATATATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTT
321 ACCAAAACACATTCCATTCATTAGGATACACGACATTGATGCTTTGGTATCACAAGAAAAGATTT
* * *
76313 TCT-TTCCACCGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATACTTAT
386 T-TGTGCCA-CGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATACTCAC
76377 ACTAATCCCCA-TTCTTTTCAGGAC
449 ACTAATCCCCATTTCTTTT-AGGAC
* * * * * *
76401 TAGGTACCACAAACGA-AGTCTTCTCACTAGTATACACGATATTGTTGTTTTGGTTTCACAAGAT
1 TAGGCACCACAAAC-ATAGTCTTCTCACTAGGATACACGATATTGATGCTTTGGTTTCACAACAA
* * * ** *
76465 AGG-TAATT-TTCCCACCATTTTTTGTAAGGTGTAAGTTTGTACCT-TAAATGCGACAAACATGA
65 AGGCT--TTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATACCTCTAAATGAGACAAACATGA
* * * * *
76527 ATTCTACTAATGTCCTTCATTTATTTTGTGATTGGGTACTATAAACACATTCTTCGCATTAGGAT
128 ATTCTAGTAATGT-CTTCATTCATTTTGTGATT-AGCACTATAAACACATTCTTCTCATTAGGAT
* * *
76592 ACATGATATTGATGCTTTGGTTTT
191 AAATGATATTGATGATTTTGTTTT
76616 GCAACAAAGG
Statistics
Matches: 573, Mismatches: 96, Indels: 38
0.81 0.14 0.05
Matches are distributed among these distances:
471 3 0.01
472 121 0.21
473 225 0.39
474 10 0.02
475 212 0.37
476 2 0.00
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.37
Consensus pattern (472 bp):
TAGGCACCACAAACATAGTCTTCTCACTAGGATACACGATATTGATGCTTTGGTTTCACAACAAA
GGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATACCTCTAAATGAGACAAACATGAATT
CTAGTAATGTCTTCATTCATTTTGTGATTAGCACTATAAACACATTCTTCTCATTAGGATAAATG
ATATTGATGATTTTGTTTTCTACGAAAATCTTTTCTTTACCCTATTTTCCTTAAAATCAAAGTTT
CCCTTAAATAAGACAAGCATCAATTATCATAACAGTCTCCATTCTTTTCAAGATTTAGAAACCAA
AACACATTCCATTCATTAGGATACACGACATTGATGCTTTGGTATCACAAGAAAAGATTTTTGTG
CCACGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATACTCACACTAATC
CCCATTTCTTTTAGGAC
Found at i:76581 original size:158 final size:155
Alignment explanation
Indices: 76419--76739 Score: 342
Period size: 156 Copynumber: 2.1 Consensus size: 155
76409 ACAAACGAAG
* * * * * * *
76419 TCTTCTCACTAGTATACACGATATTGTTGTTTTGGTTTCACAAGATAGG-TAATTTTCCCACCAT
1 TCTTCTCACTAGGATACACGATATTGATGCTTTGGTTTCACAACAAAGGCT--TTCTCCCACCAA
* * * ** * * *
76483 TTTTTGTAAGGTGTAAGTTTGTACCTTAAATGCGACAAACAT-GAATTCTACTAATG-TCCTTCA
64 TTTTT-TAAAGTCTAAATTCATACCTCAAATGAGACAAACATAG-ATTCTACTAAAGAT-CTTCA
* *
76546 TTTATTTTGTGATTGGGTACTATAAACACAT
126 TTT-TTTTGTGATAGGGCACTATAAACACAT
* * * **
76577 TCTTCGCATTAGGATACATGATATTGATGCTTTGGTTTTGCAACAAAGGCTTTCTCCCACCAATT
1 TCTTCTCACTAGGATACACGATATTGATGCTTTGGTTTCACAACAAAGGCTTTCTCCCACCAATT
* *
76642 TTTTAAAGTCTAAATTCATGCCTCAAATGAGACAAACATAGATTCTAGTAAAGATCTTCATTTTT
66 TTTTAAAGTCTAAATTCATACCTCAAATGAGACAAACATAGATTCTACTAAAGATCTTCATTTTT
76707 TTGTGATAGGGCACTATAAACACAT
131 TTGTGATAGGGCACTATAAACACAT
*
76732 TCTGCTCA
1 TCTTCTCA
76740 TTTGGATAAA
Statistics
Matches: 134, Mismatches: 26, Indels: 9
0.79 0.15 0.05
Matches are distributed among these distances:
155 31 0.23
156 46 0.34
157 17 0.13
158 39 0.29
159 1 0.01
ACGTcount: A:0.29, C:0.18, G:0.15, T:0.38
Consensus pattern (155 bp):
TCTTCTCACTAGGATACACGATATTGATGCTTTGGTTTCACAACAAAGGCTTTCTCCCACCAATT
TTTTAAAGTCTAAATTCATACCTCAAATGAGACAAACATAGATTCTACTAAAGATCTTCATTTTT
TTGTGATAGGGCACTATAAACACAT
Found at i:76949 original size:630 final size:631
Alignment explanation
Indices: 75936--77161 Score: 1733
Period size: 630 Copynumber: 1.9 Consensus size: 631
75926 ATTAGGCACC
* * *
75936 ATAAACATAGTCTTCTCATTAGGATGCATGATATTGATGCTTTGGTTTCACAACAAAGGCTTTCT
1 ATAAACACAGTCTTCGCATTAGGATACATGATATTGATGCTTTGGTTTCACAACAAAGGCTTTCT
** * * * * * ** * **
76001 TCCTGCTAATTTTTGTAAATTCTAAGTTCATGCCTCTAATGAGATAAAGGTGGATTCCAGTAATT
66 TCCCACCAATTTTTGTAAAGTCTAAATTCATGCCTCAAATGAGACAAACATAGATTCCAGTAAAG
* * *
76066 ATCTTCATTCATTTTGTGATTAGACACAATAAACACATTCTTCTTATTTGGATAAATGATATTGA
131 ATCTTCATTCATTTTGTGATTAGACACAATAAACACATTCTGCTCATTTGGATAAATGACATTGA
*** * * * *
76131 TGATTTTTTTCTACATGGAAATCTTTTCTTTACCCTATTTTCCTTAAAATCAAAGTTCCCTTAAA
196 TGATTTTTTTCTACACAAAAATCATTTCTCTACCCTACTATCCTTAAAATCAAAGTTCCCTTAAA
*
76196 TAAGACAAGCATCAATTCTCATAACAGTCTCCATTCTTTTCAAGATTAGGAAACCAAAACACATT
261 TAAGACAAGCATCAATTCTCATAACAGTCTCCATTCTTTTCAAGATTAGGAAACAAAAACACATT
* * *
76261 CCCTTCATTAGGATATATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTT
326 CCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCATT
*
76326 TTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATACTTATACTAATCCCCATTC
391 TTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTC
* * * *
76391 TTTTCAGGACTAGGTACCACAAACGAAGTCTTCTCACTAGTATACACGATATTGTTGTTTTGGTT
456 TTTTCAGGACTAGGCACCACAAACGAAGTCTACTCACTAGGATACACGATATTGATGTTTTGGTT
* * * * * ** * *
76456 TCACAAGATAGGTAATTTTCCCACCATTTTTTGTAAGGTGTAAGTTTGTACCTTAAATGCGACAA
521 TCACAAGAAAGGCAATTTTCCCACCAATTTTTGTAAAGTCTAAGTTAATACCTCAAATGAGACAA
76521 ACATGAATTCTACTAATGTCCTTCATTTATTTTGTGATTGGGTACT
586 ACATGAATTCTACTAATGTCCTTCATTTATTTTGTGATTGGGTACT
* **
76567 ATAAACACATTCTTCGCATTAGGATACATGATATTGATGCTTTGGTTTTGCAACAAAGGCTTTC-
1 ATAAACACAGTCTTCGCATTAGGATACATGATATTGATGCTTTGGTTTCACAACAAAGGCTTTCT
*
76631 TCCCACCAATTTTT-TAAAGTCTAAATTCATGCCTCAAATGAGACAAACATAGATTCTAGTAAAG
66 TCCCACCAATTTTTGTAAAGTCTAAATTCATGCCTCAAATGAGACAAACATAGATTCCAGTAAAG
* * *
76695 ATCTTCATT-TTTTTGTGA-TAGGGCACTATAAACACATTCTGCTCATTTGGATAAATGACATTG
131 ATCTTCATTCATTTTGTGATTA-GACACAATAAACACATTCTGCTCATTTGGATAAATGACATTG
* *
76758 ATGATTTTTTT-TGCACAAAAATCATTTCTCTGCCCTACTATCCTTAAAATCAAAGTACATCCCT
195 ATGATTTTTTTCTACACAAAAATCATTTCTCTACCCTACTATCCTTAAAATCAAAGT---TCCCT
* * * * * * *
76822 TGAATAAGACAAGCATCGATTCTCGTAACAGTCTCTATTCTTTTTAAGATTGGGAAGCAAAAACA
257 TAAATAAGACAAGCATCAATTCTCATAACAGTCTCCATTCTTTTCAAGATTAGGAAACAAAAACA
* *
76887 TATTCCCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCAC
322 CATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCAC
* *
76952 CATTTTTGATAGAATCAAAGTTTGTCTCTTAAGTAAGACAAACATGAATACTCATACTAATCCCC
387 CATTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCC
* * * * *
77017 ATTCTTTTTAGGATTAGGCACCATAAACGAAGTCTACTCATTAGGATACATGATATTGATGTTTT
452 ATTCTTTTCAGGACTAGGCACCACAAACGAAGTCTACTCACTAGGATACACGATATTGATGTTTT
* *
77082 GGTTTCGCAAGAAAGGCATTTTTCCCACCAATTTTTGTAAAGTCTAAGTTAATACCTCAAATGAG
517 GGTTTCACAAGAAAGGCAATTTTCCCACCAATTTTTGTAAAGTCTAAGTTAATACCTCAAATGAG
* *
77147 ACGAACATGGATTCT
582 ACAAACATGAATTCT
77162 GGTGACGATC
Statistics
Matches: 519, Mismatches: 72, Indels: 9
0.87 0.12 0.01
Matches are distributed among these distances:
627 38 0.07
628 56 0.11
629 49 0.09
630 318 0.61
631 58 0.11
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (631 bp):
ATAAACACAGTCTTCGCATTAGGATACATGATATTGATGCTTTGGTTTCACAACAAAGGCTTTCT
TCCCACCAATTTTTGTAAAGTCTAAATTCATGCCTCAAATGAGACAAACATAGATTCCAGTAAAG
ATCTTCATTCATTTTGTGATTAGACACAATAAACACATTCTGCTCATTTGGATAAATGACATTGA
TGATTTTTTTCTACACAAAAATCATTTCTCTACCCTACTATCCTTAAAATCAAAGTTCCCTTAAA
TAAGACAAGCATCAATTCTCATAACAGTCTCCATTCTTTTCAAGATTAGGAAACAAAAACACATT
CCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCATT
TTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTC
TTTTCAGGACTAGGCACCACAAACGAAGTCTACTCACTAGGATACACGATATTGATGTTTTGGTT
TCACAAGAAAGGCAATTTTCCCACCAATTTTTGTAAAGTCTAAGTTAATACCTCAAATGAGACAA
ACATGAATTCTACTAATGTCCTTCATTTATTTTGTGATTGGGTACT
Found at i:78880 original size:475 final size:473
Alignment explanation
Indices: 77323--81135 Score: 4001
Period size: 475 Copynumber: 8.2 Consensus size: 473
77313 TCTAGCGTTG
* * * *
77323 ATGACATTGATGCTTTGGTGTCGTAATAAAAGCTTTTCCTTTCACCATTTTTGATAGAATCAAAG
1 ATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTT-CTTCCACCGTTTTTGATAGAATCAAAG
* * * *
77388 TTTGTCTCTTAAATAAGACAAACATGAATAGTCACACTAATCCACTTTCTTTTCAGGATTAGGCA
65 TTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCA
* * * *
77453 CCATAAACATAGTCTTCTCAGTAGGATGCATGATATTGATGCTTTGGTTTTGCAAGAAAGGCTTT
130 CCATAAACATAGTCTTCTCATTAGGATACATGATATTGAAGCTTTGGTTTCGCAAGAAAGGCTTT
* * * * * *
77518 CTTCCCTCCAATTTTTGTAAAGTCTAAGTTCGTTCTTCAAATGAGACAAACATGAATTCTAGTAA
195 CTTCCCACCAATTTTTGTAAAGTCTAA-TCCATGCTTCAAATGAGGCAAACATGGATTCTAGTAA
* * * *
77583 TGATCTTCATTCATTTGGTGATTAGGCACAATAAAAACATTCTCCTCGTTAGGATAAAAGATATT
259 TGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAAAGATATT
* *
77648 GATGATTTTCTTTTGCATGGAAATCTTTTTTTTGCCCTATTTTCCCTAAAATCAAAGTTCATCCC
324 GATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCC
* ** * * * *
77713 TTGAATAAGTGAAGCATCGATTCACGTAATAGTCCCCACTCTTTTCTAA-ATTGGGAAGCCAAAA
389 TTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTC-AAGATTGGGAAGCCAAAA
** *
77777 CACATTCCCTTTGTTAGGATAT
453 CACATT-CCTTCATTAGGATAC
* * * * * * *
77799 AAGACATTGATGCTTTGGAGCCGCAAGAAAAG-TTTTCTTCCCCCCATTTTTGATAGAGTCAAGG
1 ATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTT-CCACCGTTTTTGATAGAATCAAAG
* * **
77863 TTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCCTTTCAGGATTTGGTG
65 TTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCA
* * *
77928 CCATAAACATAGTCTTCTCCTTAGGATACACGATATTGATA-CTTTGGTTTCGCAAGAAAGTCTT
130 CCATAAACATAGTCTTCTCATTAGGATACATGATATTGA-AGCTTTGGTTTCGCAAGAAAGGCTT
* *** * * *
77992 TCTTCACTTTAATTTTTGTAAAGTCTAAGCTCATGCTTCAAATGAGGTAAACATGGATTCTAGCA
194 TCTTCCCACCAATTTTTGTAAAGTCTAATC-CATGCTTCAAATGAGGCAAACATGGATTCTAGTA
* * *
78057 ATGATCTTCATTCTTTTTGTGATTAGGCACTAAAAACATATTCTCCTCATTAGGATAAAAGATAT
258 ATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAAAGATAT
* * *
78122 TGATGATTTT-TATTGCATGGAAATCTTTTCTTT-TCCTAATTATCCTTAAAATCAAAGTTCATC
323 TGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCT-ATTTTCCTTAAAATCAAAGTTCATC
* * * * **
78185 CCTTAAATAACACAAGCATCAATTGTCATAATGGTCTCCATTCTTTTCAAGATTGGGAA-CCAAA
387 CCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAA
* * *
78249 AGACATACCCTTCAATAGGATAC
452 ACACAT-TCCTTCATTAGGATAC
* * * * * * * *
78272 ATGAAATTGATGCTTTAGTGTCACAAAAAAAGATTTTCTTTCCACTGTTTTTAATAGAAACAAAG
1 ATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTC-TTCCACCGTTTTTGATAGAATCAAAG
* * * * * *
78337 TTTGTCTCTTAAATAAGACAAATATGAGTATTCATACTAATCCCAATTCCTTTT-AGAATTGGGC
65 TTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATT-CTTTTCAGGATTAGGC
* * * * *
78401 ACCATAAACATAGTCTTTTCATTAGGGTACGTGCTATTGAAGCTTTGGTTTCGCAACAAAGGCTT
129 ACCATAAACATAGTCTTCTCATTAGGATACATGATATTGAAGCTTTGGTTTCGCAAGAAAGGCTT
* * * ** *
78466 TCTTCCCACCAATTTTTCTAAAGTCTAAATCCATGCCTCAATTGAGGCAAACATAAATTCTAGTC
194 TCTTCCCACCAATTTTTGTAAAGTCT-AATCCATGCTTCAAATGAGGCAAACATGGATTCTAGTA
* * ** * * *
78531 ATTATCTTCATTCGTTTTGTGA-TACAACACTATAAACACATTCTCCTCAATAAGATAAAAGACA
258 ATGATCTTCATTCATTTTGTGATTA-GGCACTATAAACACATTCTCCTCATTAGGATAAAAGATA
* * * * * *
78595 TTGATGTTTTTCTTTTGCATGCAAGTCTTTTCTTTGCCTTATTTTCTTTAAAATGAAAGTTCATC
322 TTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATC
* * *
78660 CCTTGAATAAGACAAGCATCGATTCTTGTAACTGTCTCCATT-TTTTCAAGATTGGGAAGCCAAA
387 CCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAA
*
78724 ACATATTGCCTTCATTAGGATAC
452 ACACATT-CCTTCATTAGGATAC
* * * * *
78747 ATGACATTGACGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCCTGCTGCTTTTGATAGAATCAAAG
1 ATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTCC-ACCGTTTTTGATAGAATCAAAG
78812 TTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCA
65 TTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCA
* *
78877 CCATAAACATAGTCTTCTCATTAGGATACATGATATTGAAGCTTTGTTTTCGCAACAAAGGCTTT
130 CCATAAACATAGTCTTCTCATTAGGATACATGATATTGAAGCTTTGGTTTCGCAAGAAAGGCTTT
* * * * *
78942 CTTCCCACCAATTGTTGTAAAGTCT-ATGCACATGCCTCAAAT-ATGACAAACATAGATTCTACT
195 CTTCCCACCAATTTTTGTAAAGTCTAAT-C-CATGCTTCAAATGA-GGCAAACATGGATTCTAGT
* *
79005 AATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCTTTAGGATAAATA-AC
257 AATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAA-AGAT
**
79069 ATTGATGATTTTCTTTT-CTATGGAAATCTTTTCTTTGCGTTATTTTCCTTAAAATCAAAGTTCA
321 ATTGATGATTTTCTTTTGC-ATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCA
* ** * * * * * *
79133 TCTCTCGAATAAGATAAGCATCGATTATCCTTACAGTTTCCATTCTTTTCAAGATTTGGAAGCCA
385 TCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCA
* **
79198 AAACATATTGCCTTTGTTAGGATAC
450 AAACACATT-CCTTCATTAGGATAC
* * *
79223 ATGACATTGATGCTTTGGTGTCGCAAGAAAAGATTTT-TGTCCCACCATTTTTTATAGAATCAAA
1 ATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCT-T-CCACCGTTTTTGATAGAATCAAA
* * * *
79287 GTTTGTCTCTTAAATAAGACTAACATGAATACTCACACTAATCCTCATTCTTTTTAGGATTAGGC
64 GTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGC
* * * * * *
79352 ACCATAAATATAGTCTTCTCATTAGGATGCATGATATTGATGCTTCGGTTTCACAACAAAGGCTT
129 ACCATAAACATAGTCTTCTCATTAGGATACATGATATTGAAGCTTTGGTTTCGCAAGAAAGGCTT
* * * *
79417 TTTTCCCATCAAATTTTGTAAAGTCT-A---A-G-TTC-------G------TGGATTCCAGTAA
194 TCTTCCCACCAATTTTTGTAAAGTCTAATCCATGCTTCAAATGAGGCAAACATGGATTCTAGTAA
* * * * * *
79463 TTATCTTCATTCATTTTTTGATTAGGCACAATAAACACATTCTCCTCATTTGGATAAATGATGTT
259 TGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAAAGATATT
* * *
79528 GATGATTTTCTTCTACATGGAAATCTTTTCTTTACCCTATTTTCCTTAAAATCAAAG-T--TCCC
324 GATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCC
* * *
79590 TTAAATAAGACAAGCATCAATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAACCAAAAC
389 TTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAAC
*
79655 ACATTCCCTTCATTAGGATAT
454 ACATT-CCTTCATTAGGATAC
79676 ATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAG
1 ATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTC-TTCCACCGTTTTTGATAGAATCAAAG
* * *
79741 TTTGCCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTTAGGATTAGGTA
65 TTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCA
* * * * * * *
79806 CCACAAAC-T--TC-TCACA--AAGATACACGATAATGACGTTTTGGTTTCGCAAGAAAGGCTTT
130 CCATAAACATAGTCTTCTCATTAGGATACATGATATTGAAGCTTTGGTTTCGCAAGAAAGGCTTT
* ** * * *** * *
79865 TTTCCCACCAATTTTTGTAAAGTCTAAGTTAATGCCTCAAATGCGATGAACATGGATTTTGGTAA
195 CTTCCCACCAATTTTTGTAAAGTCTAA-TCCATGCTTCAAATGAGGCAAACATGGATTCTAGTAA
* * * **
79930 TGATCTTCATTCTTTTTGTGATTAGCCACTATAAACACATTCTCTTTTTTAGGATAAACA-ATAT
259 TGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAA-AGATAT
* * * *
79994 TGAT--TTTT-TTCTACATGAAAATCATTTTC-TTGCCCTATTTTCCTTAAAATCAATGTTCATC
323 TGATGATTTTCTTTTGCATGGAAATC-TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATC
* * * * *
80055 CCTTAAATAAGTCAAGTATCGATTCTAGCAACAGCCTCCATTCTTTT-AAGATT-GG--G-----
387 CCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAA
80111 --A-A-------A-T---A-A-
452 ACACATTCCTTCATTAGGATAC
* *
80117 ATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTTCTTCCATCGTTTTTTATAGAATCAAAG
1 ATGACATTGATGCTTTGGTGTCGCAAGAAAAGC-TTTTCTTCCACCGTTTTTGATAGAATCAAAG
* * * * *
80182 TTTGTCTCTTAAATAAGACGAACATGAATACTCACACTAAT-CCCTTTTTTTTAAGGATTAGGCA
65 TTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCA
* * * * * *
80246 CCATAAACATAGCCTTCTCAGTAGGATACATGATATTGATGTTTTGGTTTTGCAAGAAAAGCTTT
130 CCATAAACATAGTCTTCTCATTAGGATACATGATATTGAAGCTTTGGTTTCGCAAGAAAGGCTTT
* * * * * * * ****
80311 CTTTCCTCCAA-TTTTGTAAAGTCTAAGTTCGTTCTTCAAATGAGACGAACGCAAATTCTAGTAA
195 CTTCCCACCAATTTTTGTAAAGTCTAA-TCCATGCTTCAAATGAGGCAAACATGGATTCTAGTAA
* * * * *
80375 TGATCTTTATTCATTTGGTGATTAGGCACAATAAACACATTCTCCTCATTAGTATAAATGATATT
259 TGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAAAGATATT
* *
80440 GATGATTTTCTTTTGCATGGAAATCTTTTCTTCGCCCTATTTTCCTTAAAATTAAAGTTCATCCC
324 GATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCC
* * * * * **
80505 ATGAATAAAAGAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCTTGATTGGGAAGCCAAAAC
389 TTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAAC
*
80570 ACATTCC--C-TT-TG-T--
454 ACATTCCTTCATTAGGATAC
* * * * * * * *
80583 -TG----GGAAGCTTCGGTGCCACATGAAAAGCTTTTCTTTCCCCCGTTTTTGATAGAATCAAGG
1 ATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTC-TTCCACCGTTTTTGATAGAATCAAAG
* ** * * * *
80643 TTTATCTCTTAAATAAGACAAACATGAATACTCATACTAAT-CCCATTCCGTTCAGGGTTCGACG
65 TTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCA
* * * * * * *
80707 CCACAAATATAGTCTTCTCCTTAGGGTACGTGATGTTGATA-CTTTGGTTTTGCAAGAAAGGCAT
130 CCATAAACATAGTCTTCTCATTAGGATACATGATATTGA-AGCTTTGGTTTCGCAAGAAAGGC-T
* * * * * *
80771 TT-TTCCCTCTAATTTTTGTAATGTCTAAGCTCATGCTTCAAATGAGGCAAACATGGATTATAGC
193 TTCTTCCCACCAATTTTTGTAAAGTCTAATC-CATGCTTCAAATGAGGCAAACATGGATTCTAGT
* * * *
80835 AATGATCTTCATTCTTTTTGTGATTAGGCACTATAAACATATTCTCCTTATTAGGATAAACGATA
257 AATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAAAGATA
* * * *
80900 TTGATGACTTT-TTTTGCATGGAAATCTTTTCTCTGCCCAATTATCCTTAAAATCAAAGTTCA-C
322 TTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATC
* * * * * *
80963 CCTTTAAATAAGACAAGTATCGATTATCATAATAATCTCCATTCTTTTCAAGATTGGGAAACCAA
387 CC-TTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAA
*
81028 AACACATATCCTTCAATAGGATAC
451 AACACAT-TCCTTCATTAGGATAC
* * * * * *
81052 ATGACATTAATGCTTTGATGTCACAAGAAAAGATTTTCTTTCCACCGTTTTTGATCGAAACAAAG
1 ATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTC-TTCCACCGTTTTTGATAGAATCAAAG
** *
81117 TTTACCTCTAAAATAAGAC
65 TTTGTCTCTTAAATAAGAC
81136 TAATATTGAA
Statistics
Matches: 2784, Mismatches: 445, Indels: 218
0.81 0.13 0.06
Matches are distributed among these distances:
440 26 0.01
441 96 0.03
442 6 0.00
443 2 0.00
444 4 0.00
445 98 0.04
446 46 0.02
447 67 0.02
448 79 0.03
449 8 0.00
450 4 0.00
452 3 0.00
453 199 0.07
454 3 0.00
455 3 0.00
456 118 0.04
457 1 0.00
459 1 0.00
460 9 0.00
461 256 0.09
462 110 0.04
464 39 0.01
465 16 0.01
466 7 0.00
467 109 0.04
469 2 0.00
470 3 0.00
471 1 0.00
473 56 0.02
474 420 0.15
475 722 0.26
476 268 0.10
477 2 0.00
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (473 bp):
ATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTCCACCGTTTTTGATAGAATCAAAGT
TTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCAC
CATAAACATAGTCTTCTCATTAGGATACATGATATTGAAGCTTTGGTTTCGCAAGAAAGGCTTTC
TTCCCACCAATTTTTGTAAAGTCTAATCCATGCTTCAAATGAGGCAAACATGGATTCTAGTAATG
ATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAAAGATATTGA
TGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTT
AAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACAC
ATTCCTTCATTAGGATAC
Found at i:81929 original size:19 final size:20
Alignment explanation
Indices: 81886--81936 Score: 68
Period size: 20 Copynumber: 2.6 Consensus size: 20
81876 TACAAGCCAA
**
81886 TGTATCGATACATTTTATGG
1 TGTATCGATACATACTATGG
*
81906 TGTATCGATACATACTGT-G
1 TGTATCGATACATACTATGG
81925 TGTATCGATACA
1 TGTATCGATACA
81937 AGTTTGGCTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
19 13 0.46
20 15 0.54
ACGTcount: A:0.27, C:0.14, G:0.20, T:0.39
Consensus pattern (20 bp):
TGTATCGATACATACTATGG
Found at i:84005 original size:21 final size:21
Alignment explanation
Indices: 83974--84025 Score: 61
Period size: 20 Copynumber: 2.4 Consensus size: 21
83964 GCTGCTAGTG
*
83974 TGGGGGCTGCCCGGTTACGACC
1 TGGGGG-TGCCCGGTCACGACC
*
83996 TGGGGGTG-CCGGTCGCGACC
1 TGGGGGTGCCCGGTCACGACC
84016 TGGTGGGTGC
1 TGG-GGGTGC
84026 TGCCTAGGGG
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
20 13 0.50
21 7 0.27
22 6 0.23
ACGTcount: A:0.06, C:0.27, G:0.48, T:0.19
Consensus pattern (21 bp):
TGGGGGTGCCCGGTCACGACC
Found at i:84319 original size:20 final size:21
Alignment explanation
Indices: 84290--84330 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
84280 TGTTTTTGAA
84290 GATGATTTTG-A-TGAAAAAC
1 GATGATTTTGAAGTGAAAAAC
84309 GATGTATTTTGAAGTGAAAAAC
1 GATG-ATTTTGAAGTGAAAAAC
84331 AAGAAATTTG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 4 0.21
20 6 0.32
21 1 0.05
22 8 0.42
ACGTcount: A:0.41, C:0.05, G:0.22, T:0.32
Consensus pattern (21 bp):
GATGATTTTGAAGTGAAAAAC
Found at i:84480 original size:13 final size:13
Alignment explanation
Indices: 84464--84500 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
84454 AATCCCCCTA
* *
84464 TATCAATACAGTG
1 TATCGATACAATG
84477 TATCGATACAATG
1 TATCGATACAATG
84490 TATCGATACAA
1 TATCGATACAA
84501 AGAATGCTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.41, C:0.16, G:0.14, T:0.30
Consensus pattern (13 bp):
TATCGATACAATG
Found at i:90709 original size:13 final size:13
Alignment explanation
Indices: 90691--90715 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
90681 CATTTTATGG
90691 TGTATCGATACAA
1 TGTATCGATACAA
90704 TGTATCGATACA
1 TGTATCGATACA
90716 TACTGTGTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:90714 original size:33 final size:32
Alignment explanation
Indices: 90668--90735 Score: 91
Period size: 33 Copynumber: 2.1 Consensus size: 32
90658 CGTTAGAAGC
* **
90668 CAATGTATTGATACATTTTATGGTGTATCGATA
1 CAATGTATCGATACATACTAT-GTGTATCGATA
*
90701 CAATGTATCGATACATACTGTGTGTATCGATA
1 CAATGTATCGATACATACTATGTGTATCGATA
90733 CAA
1 CAA
90736 GTTTGGCTAC
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
32 14 0.45
33 17 0.55
ACGTcount: A:0.32, C:0.13, G:0.18, T:0.37
Consensus pattern (32 bp):
CAATGTATCGATACATACTATGTGTATCGATA
Found at i:91678 original size:159 final size:160
Alignment explanation
Indices: 91515--93138 Score: 460
Period size: 158 Copynumber: 10.3 Consensus size: 160
91505 ACATTGATGA
*
91515 TTTGGTGTCGCAGGAAAAGCTTTTCTTTTCACC-ATTTTTGATAGAATCAAAGTT-TGCCTCTAA
1 TTTGGTGTCGCAAGAAAAGCTTTTCTTTTCACCAATTTTTGATAGAATCAAAGTTCTGCCTCT-A
* * *
91578 AATAAGACAAACATAAATACTCATACTAATCCCTATTCTTTTCACGATTTGGCATGATAAACATA
65 AATAAGACAAACATAAATACTCATACTAATCCCTATTCTTTTCAGGATTAGGCACGATAAACATA
91643 GTCTTCTCATTGGGATACACGATATTTATGC
130 GTCTTCTCATTGGGATACACGATATTTATGC
* * * ** * *
91674 TTTGGTTTC-CTAACAAAGGC-TTTCTTCCCACCAATTTTTG-TA-AAGTCTATGTTCGTGCCTC
1 TTTGGTGTCGC-AAGAAAAGCTTTTCTTTTCACCAATTTTTGATAGAA-TCAAAGTTC-TGCCTC
* ** * * * * *
91735 -AAATGAGACAAACATTGATTCT-AGTAATGAT-CTTCATTCATTTT-AGGATTAGGCACAATAA
63 TAAATAAGACAAACATAAATACTCA-TACTAATCCCT-ATTC-TTTTCAGGATTAGGCACGATAA
* * * * * *
91796 ACACAGTCTCCTCATTTGGATAAATGATATTGCTAAG-
125 ACATAGTCTTCTCATTGGGATACACGATATT--TATGC
* * * * * * * * *** * *
91833 TTT-TTTTTGCATGGAAATCTTTTCTTTGC-CCTATTTTCCTTAAAATTAAAGTTCAT-CCTCTA
1 TTTGGTGTCGCAAGAAAAGCTTTTCTTTTCACCAATTTTTGATAGAATCAAAGTTC-TGCCTCTA
* * * * ** ** * * * * * *
91895 AATAACACAAGCATCAATTCTTGTAAC-AGGCTCTATTCTTTTCAAGATTGGGAAGCCAAAACAC
65 AATAAGACAAACATAAATACTCAT-ACTAATCCCTATTCTTTTCAGGATTAGGCA-CGATAA-AC
* * * * * *
91959 ATA-CCCT-TCA-TGAGGATGCATGACATTGATGC
127 ATAGTCTTCTCATTG-GGATACACGATATTTATGC
** * * * * * *
91991 TTTAATGTCCCAAGAAAAGATTTTCTTTTCACC-GTTTTTGATAGAATTAAAGTT-TACCCCTGA
1 TTTGGTGTCGCAAGAAAAGCTTTTCTTTTCACCAATTTTTGATAGAATCAAAGTTCTGCCTCT-A
* *
92054 AATAAGACAAATATGAATACTCATACTAATCCCTATTCTTTTCAGGATTAGGCACGATAAACATA
65 AATAAGACAAACATAAATACTCATACTAATCCCTATTCTTTTCAGGATTAGGCACGATAAACATA
* *
92119 GTCTTCTTATTAGGATACACGATATTTATGC
130 GTCTTCTCATTGGGATACACGATATTTATGC
* * * * ** * * *
92150 TTTGGTTTCACAATAAAGGC-TTTCTTCCCTCCAATTTTT-ATA-AAGTCTAAGTTTGTGCCTC-
1 TTTGGTGTCGCAAGAAAAGCTTTTCTTTTCACCAATTTTTGATAGAA-TCAAAG-TTCTGCCTCT
* * ** * * * * * *
92211 AAATGAGACAAACCTGGATTCT-AGTAATGAT-CTTCATTCTTTT-TGCGATTAGGCACTATAAA
64 AAATAAGACAAACATAAATACTCA-TACTAATCCCT-ATTCTTTTCAG-GATTAGGCACGATAAA
* * * * * * * *
92273 CACATTATCCTCATTAGGATAAATGCCACTAATTAT--
126 CATAGTCTTCTCATTGGGATACA--CGA-TATTTATGC
* * * * * * * ** *** * *
92309 TTT-CTTTTGCATGTAAATCTTTTCTTTGC-CTTATTTTCCTTAAAATCAAAGTTCATTCCT-TA
1 TTTGGTGTCGCAAGAAAAGCTTTTCTTTTCACCAATTTTTGATAGAATCAAAGTTC-TGCCTCTA
* * * * * * * * *
92371 AATAAGACAAGCATTAATTCTCGTTA-TAGTCTCC-ATTCTTTTCAAGATTTGGAAGCCA-AAAC
65 AATAAGACAAACATAAATACTC-ATACTAATC-CCTATTCTTTTCAGGATTAGGCA-CGATAAA-
* * * * *
92433 GCAT-TTCTT-TCATTTGGATACATGACATTGATGC
126 -CATAGTCTTCTCATTGGGATACACGATATTTATGC
* * * * * *
92467 TTTGGTGTCACAAGAAAAGCTTTTCTTTCCATC-GTTTTTGATATATTCAAAGTT-TGCCTCTTA
1 TTTGGTGTCGCAAGAAAAGCTTTTCTTTTCACCAATTTTTGATAGAATCAAAGTTCTGCCTC-TA
* * * * * * *
92530 AATAAAACAAGCATTAATAGTCATACTAATACCC-ATTCTTTTTAGGATTAGGTACCATAAACAT
65 AATAAGACAAACATAAATACTCATACTAAT-CCCTATTCTTTTCAGGATTAGGCACGATAAACAT
* * *
92594 AGTCTTCTCATTAGGG-TACACAATATTAAAGC
129 AGTCTTCTCATT-GGGATACACGATATTTATGC
* * * * * * *
92626 TTTGGTTTTGCAACAAAGGC-TTTC-TTTCTATCAATTTTT-ATA-AAGTCTAACTTCGTGCCTC
1 TTTGGTGTCGCAAGAAAAGCTTTTCTTTTC-ACCAATTTTTGATAGAA-TCAAAGTTC-TGCCTC
* * * * ** ** * *
92687 -AAATGAGACAAACATAAATTCT-AGTAATTATCTTTATT-TTTTTTGTGCTTAGGCACTATAAA
63 TAAATAAGACAAACATAAATACTCA-TACTAATCCCTATTCTTTTCAG-GATTAGGCACGATAAA
* * * * * * * * * *
92749 CACATTCTCCTCTTTAGGACAAATGATATTGATGA
126 CATAGTCTTCTCATTGGGATACACGATATTTATGC
** * ** * * * * * *
92784 TTTTCTTTTACATGGAAATCTTTTC--TTCCCCTAATTTCTT--TAAAATCAAAGTTCATCCCT-
1 TTTGGTGTCGCAAGAAAAGCTTTTCTTTTCACC-AATTT-TTGATAGAATCAAAGTTC-TGCCTC
* ** * * * * * * * * *
92844 TAAATAAGACAAGCATCGATTCTCATGA-TAGTGTCC-ATTATTTTCAAGATTGGGAAGCCAAAA
63 TAAATAAGACAAACATAAATACTCAT-ACTAAT-CCCTATTCTTTTCAGGATTAGGCA-CGATAA
* * * * * *
92907 CACATA-ACCT-TCATTAGGATACATGACATTGATGC
125 -ACATAGTCTTCTCATTGGGATACACGATATTTATGC
* * * * *
92942 TTTGTTGTTGCAAGAAAAG-TTTT-TTTT--CCATTATTTTTGATAGAAACAAAGGT-TGGCTCT
1 TTTGGTGTCGCAAGAAAAGCTTTTCTTTTCACCA--ATTTTTGATAGAATCAAAGTTCTGCCTC-
* * * *
93002 TAAATAAGACAAACATAAATACTCATACTAATCCTTATTTTTTTCAGGATTAGGTACCATAAA-A
63 TAAATAAGACAAACATAAATACTCATACTAATCCCTATTCTTTTCAGGATTAGGCACGATAAACA
* * *
93066 TAGTCTTCTCATTAGGATACACGTTATTGATGC
128 TAGTCTTCTCATTGGGATACACGATATTTATGC
* * **
93099 TTTGGTTTCGCAAAAAAAG-TTTTCTTCCCACCAATTTTTG
1 TTTGGTGTCGCAAGAAAAGCTTTTCTTTTCACCAATTTTTG
93139 TAAAGTTTAT
Statistics
Matches: 1040, Mismatches: 324, Indels: 203
0.66 0.21 0.13
Matches are distributed among these distances:
155 4 0.00
156 14 0.01
157 98 0.09
158 459 0.44
159 400 0.38
160 52 0.05
161 13 0.01
ACGTcount: A:0.31, C:0.18, G:0.13, T:0.38
Consensus pattern (160 bp):
TTTGGTGTCGCAAGAAAAGCTTTTCTTTTCACCAATTTTTGATAGAATCAAAGTTCTGCCTCTAA
ATAAGACAAACATAAATACTCATACTAATCCCTATTCTTTTCAGGATTAGGCACGATAAACATAG
TCTTCTCATTGGGATACACGATATTTATGC
Found at i:92063 original size:476 final size:478
Alignment explanation
Indices: 91107--93802 Score: 3224
Period size: 476 Copynumber: 5.7 Consensus size: 478
91097 CAAGATCCTA
* * * *
91107 ACAAATATGAATACTCATACTAATCCCAATTCTTTTTAGGATT-GGTCACCATAAACACTAGTCG
1 ACAAACATGAATACTCATACTAATCCCTATTCTTTTCAGGATTAGG-CACCATAAACA-TAGTCT
* * * *
91171 TCTCATTAGGGTATACGATATTGAAGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAAGTTT
64 TCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTTT
* * * * * * *
91236 TGCAAAGTCTAACTTCATGCCTCAATTGAGACAAACA-TGAATTCTAGTCATTATCTTCATTCTT
129 TGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATTG-ATTCTAGTAATGATCTTCATTCAT
* * *
91300 TTTAAG-G-TTAGGCACTATAAATACATTCTCCTCATTAGGATAAATGATATTGTTGATTTTCTT
193 TTT-AGTGATTAGGCACAATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTT
* * *
91363 TTGCATGAAAATCTTTTCTTTACCTTATTTTCCTTAAAATCAAAGTTCATCC-CTTAAATAAGAC
257 TTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCTCTTAAATAAGAC
* * *
91427 AAGCATCAATTCTTGTAACAATG-TCCATTCTTTTCAAGATTTGGAAGCCAAAATACATTCCCTT
322 AAGCATCAATTCTTGTAAC-AGGCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTT
* * * *
91491 CATTTGGATACTTGACATTGATGATTTGGTGTCGCAGGAAAAGCTTTTCTTTTCACCATTTTTGA
386 CATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTTCACCATTTTTGA
*
91556 TAGAATCAAAGTTTGCCTCTAAAATAAG
451 TAGAATCAAAGTTTGCCTCTGAAATAAG
* * * **
91584 ACAAACATAAATACTCATACTAATCCCTATTCTTTTCACGATTTGGCATGATAAACATAGTCTTC
1 ACAAACATGAATACTCATACTAATCCCTATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTC
* *
91649 TCATTGGGATACACGATATTTATGCTTTGGTTTC-CTAACAAAGGCTTTCTTCCCACCAATTTTT
66 TCATTAGGATACACGATATTGATGCTTTGGTTTCGC-AACAAAGGCTTTCTTCCCACCAATTTTT
*
91713 GTAAAGTCTATGTTCGTGCCTCAAATGAGACAAACATTGATTCTAGTAATGATCTTCATTCATTT
130 GTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATTGATTCTAGTAATGATCTTCATTCATTT
* * * *
91778 TAG-GATTAGGCACAATAAACACAGTCTCCTCATTTGGATAAATGATATTGCTAAGTTTT-TTTT
195 TAGTGATTAGGCACAATAAACACATTCTCCTCATTAGGATAAATGATATTGATGA-TTTTCTTTT
* *
91841 GCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATTAAAGTTCATCCTC-TAAATAACACAA
259 GCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCTCTTAAATAAGACAA
* *
91905 GCATCAATTCTTGTAACAGGCTCTATTCTTTTCAAGATTGGGAAGCCAAAACACATACCCTTCAT
324 GCATCAATTCTTGTAACAGGCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCAT
* * ** * * *
91970 GAGGATGCATGACATTGATGCTTTAATGTCCCAAGAAAAGATTTTCTTTTCACCGTTTTTGATAG
389 TAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTTCACCATTTTTGATAG
* * *
92035 AATTAAAGTTTACCCCTGAAATAAG
454 AATCAAAGTTTGCCTCTGAAATAAG
* *
92060 ACAAATATGAATACTCATACTAATCCCTATTCTTTTCAGGATTAGGCACGATAAACATAGTCTTC
1 ACAAACATGAATACTCATACTAATCCCTATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTC
* * * * * *
92125 TTATTAGGATACACGATATTTATGCTTTGGTTTCACAATAAAGGCTTTCTTCCCTCCAATTTTTA
66 TCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTTTTG
* * *
92190 TAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACCTGGATTCTAGTAATGATCTTCATTC-TTTT
131 TAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATTGATTCTAGTAATGATCTTCATTCATTTT
* * * * ** * * *
92254 TGCGATTAGGCACTATAAACACATTATCCTCATTAGGATAAATGCCACTAATTATTTTCTTTTGC
196 AGTGATTAGGCACAATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGC
* * *
92319 ATGTAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATTC-CTTAAATAAGACAAGC
261 ATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCTCTTAAATAAGACAAGC
* * * * * * * * * *
92383 ATTAATTCTCGTTATAGTCTCCATTCTTTTCAAGATTTGGAAGCCAAAACGCATTTCTTTCATTT
326 ATCAATTCTTGTAACAGGCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTA
* * * * * *
92448 GGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCATCGTTTTTGATATAT
391 GGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTTCACCATTTTTGATAGAA
* *
92513 TCAAAGTTTGCCTCTTAAATAAA
456 TCAAAGTTTGCCTCTGAAATAAG
* * * * *
92536 ACAAGCATTAATAGTCATACTAATACCC-ATTCTTTTTAGGATTAGGTACCATAAACATAGTCTT
1 ACAAACATGAATACTCATACTAAT-CCCTATTCTTTTCAGGATTAGGCACCATAAACATAGTCTT
* * * * * * * *
92600 CTCATTAGGGTACACAATATTAAAGCTTTGGTTTTGCAACAAAGGCTTTCTTTCTATCAATTTTT
65 CTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTTTT
* * ** * * *
92665 ATAAAGTCTAACTTCGTGCCTCAAATGAGACAAACATAAATTCTAGTAATTATCTTTATT-TTTT
130 GTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATTGATTCTAGTAATGATCTTCATTCATTT
* * * * * *
92729 TTGTGCTTAGGCACTATAAACACATTCTCCTCTTTAGGACAAATGATATTGATGATTTTCTTTTA
195 TAGTGATTAGGCACAATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTG
* * *
92794 CATGGAAATCTTTTC-TTCCCCTAATTTCTTTAAAATCAAAGTTCATCC-CTTAAATAAGACAAG
260 CATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCTCTTAAATAAGACAAG
* ** * * * **
92857 CATCGATTCTCATGATAGTG-TCCATTATTTTCAAGATTGGGAAGCCAAAACACATAACCTTCAT
325 CATCAATTCTTGTAACAG-GCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCAT
* * **
92921 TAGGATACATGACATTGATGCTTTGTTGTTGCAAGAAAAG-TTTT-TTTTCCATTATTTTTGATA
389 TAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTT-CACCATTTTTGATA
* * * *
92984 GAAACAAAGGTTGGCTCTTAAATAAG
453 GAATCAAAGTTTGCCTCTGAAATAAG
* * * *
93010 ACAAACATAAATACTCATACTAATCCTTATTTTTTTCAGGATTAGGTACCATAAA-ATAGTCTTC
1 ACAAACATGAATACTCATACTAATCCCTATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTC
* * * *
93074 TCATTAGGATACACGTTATTGATGCTTTGGTTTCGCAAAAAAAGTTTTCTTCCCACCAATTTTTG
66 TCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTTTTG
* * * *
93139 TAAAGTTTATGTTCGTGCCTCAAATGAGACAAACA-TGCATTCTAGTAATGATCTTTATTTATTT
131 TAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATTG-ATTCTAGTAATGATCTTCATTCATTT
* *
93203 TA-TGATTAGGCACAATAAACACATTC-CCTTCATTAGGATAAGTGACATTGATGATTTTCTTTT
195 TAGTGATTAGGCACAATAAACACATTCTCC-TCATTAGGATAAATGATATTGATGATTTTCTTTT
* * * *
93266 GCATTGAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCAT-CTCTTAAATAAAATAA
259 GCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCTCTTAAATAAGACAA
* ** ** * *
93330 GCATCGATTC-TCAATACAATCTCCAATCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTTA
324 GCATCAATTCTTGTA-ACAGGCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCA
* * **
93394 TTAGGATACATGACATTAATGGTTTAGG-GTCTTAAGAAAAGCTTTTC-TTTCTACCATTTTTGA
388 TTAGGATACATGACATTGATGCTTT-GGTGTCGCAAGAAAAGCTTTTCTTTTC-ACCATTTTTGA
* **
93457 AAGAATCAAAGTTTATCTCTTG-AATAAG
451 TAGAATCAAAGTTTGCCTC-TGAAATAAG
* * * * * * * *
93485 GCAAATATGAATACTCACACTAATCCCCT-TTATTTGCAGGATTGGGCACCATAAACATACTTTT
1 ACAAACATGAATACTCATACTAAT-CCCTATTCTTTTCAGGATTAGGCACCATAAACATAGTCTT
* * * * * * * *
93549 CTCATTAGGATACATGATATTGATGTTTTGGTTTTGTAAGAAAAGCTTTCTTCCCTCTAATTTTT
65 CTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTTTT
* *
93614 GTAAAGTCT-ATTATCGTGCCTCAAATGAGACAAACATAGATTCTAGTAATGATCTTCATTCATT
130 GTAAAGTCTAAGT-TCGTGCCTCAAATGAGACAAACATTGATTCTAGTAATGATCTTCATTCATT
* * *
93678 TT-GTGATTAGGCACAATAAACACATTCTCCTCATTGGGATAAATGATATTAATGATTTTCTTTC
194 TTAGTGATTAGGCACAATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTT
* * * *
93742 GTATGGAAATATTTTCTTTGCCCTATTTTCATTAAAATCAAAGTTCAT-ATCTTAAATAAGA
259 GCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCTCTTAAATAAGA
93803 TAAACATTGA
Statistics
Matches: 1903, Mismatches: 282, Indels: 69
0.84 0.13 0.03
Matches are distributed among these distances:
472 2 0.00
473 185 0.10
474 209 0.11
475 227 0.12
476 1217 0.64
477 61 0.03
478 2 0.00
ACGTcount: A:0.31, C:0.18, G:0.13, T:0.38
Consensus pattern (478 bp):
ACAAACATGAATACTCATACTAATCCCTATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTC
TCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTTTTG
TAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATTGATTCTAGTAATGATCTTCATTCATTTT
AGTGATTAGGCACAATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGC
ATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCTCTTAAATAAGACAAGC
ATCAATTCTTGTAACAGGCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTA
GGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTTCACCATTTTTGATAGAA
TCAAAGTTTGCCTCTGAAATAAG
Found at i:94902 original size:51 final size:50
Alignment explanation
Indices: 94770--94905 Score: 150
Period size: 51 Copynumber: 2.7 Consensus size: 50
94760 GAAAATTTTA
* * *
94770 ATATTTTGGAGATAAAAACGAGGTTGGAGTA-CCCTGATTGTGGAAAATCT
1 ATATTTTGGAAAT-AAAACGGGGTTGGAGTATCCCTGATTATGGAAAATCT
* * *
94820 GTGTTTTGGAAATAAAACTGGGGCTGGAGTATCTCCT-ATTATGGAAAATCT
1 ATATTTTGGAAATAAAAC-GGGGTTGGAGTATC-CCTGATTATGGAAAATCT
* *
94871 ATATTTTAGAAATAAAATCGGGGTTGAAGTATCCC
1 ATATTTTGGAAATAAAA-CGGGGTTGGAGTATCCC
94906 CTCGAAAATA
Statistics
Matches: 71, Mismatches: 11, Indels: 8
0.79 0.12 0.09
Matches are distributed among these distances:
49 5 0.07
50 22 0.31
51 40 0.56
52 4 0.06
ACGTcount: A:0.33, C:0.11, G:0.24, T:0.32
Consensus pattern (50 bp):
ATATTTTGGAAATAAAACGGGGTTGGAGTATCCCTGATTATGGAAAATCT
Found at i:94975 original size:79 final size:79
Alignment explanation
Indices: 94861--95062 Score: 300
Period size: 79 Copynumber: 2.6 Consensus size: 79
94851 TCTCCTATTA
* * *
94861 TGGAAAATCTATATTTTAGAAATAAAA-TCGGGGTTGAAGTATCCCCTCGAAAATAAC-AGGATT
1 TGGAAAATCGATGTTTTAGAAATAAAACT-GGGGTTGGAGTATCCCCTCGAAAATAACAAGG-TT
94924 GGAGTATCCTCGATGG
64 GGAGTATCCTCGATGG
* * * *
94940 TGGAAAATTGGTGTTTTAGAAATAAAACTGGGGTTGGAGTATCCCCTTGGAAATAACAAGGTTGG
1 TGGAAAATCGATGTTTTAGAAATAAAACTGGGGTTGGAGTATCCCCTCGAAAATAACAAGGTTGG
95005 AGTATCCTCGATGG
66 AGTATCCTCGATGG
*
95019 TGGAAAATCGATGTTTTAGAAATAAAACTGAGGTTGGAGTATCC
1 TGGAAAATCGATGTTTTAGAAATAAAACTGGGGTTGGAGTATCC
95063 TCGATGGTGG
Statistics
Matches: 111, Mismatches: 10, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
79 107 0.96
80 4 0.04
ACGTcount: A:0.34, C:0.12, G:0.26, T:0.29
Consensus pattern (79 bp):
TGGAAAATCGATGTTTTAGAAATAAAACTGGGGTTGGAGTATCCCCTCGAAAATAACAAGGTTGG
AGTATCCTCGATGG
Found at i:95062 original size:51 final size:51
Alignment explanation
Indices: 94998--95096 Score: 180
Period size: 51 Copynumber: 1.9 Consensus size: 51
94988 GGAAATAACA
*
94998 AGGTTGGAGTATCCTCGATGGTGGAAAATCGATGTTTTAGAAATAAAACTG
1 AGGTTGGAGTATCCTCGATGGTGGAAAATCGATATTTTAGAAATAAAACTG
*
95049 AGGTTGGAGTATCCTCGATGGTGGAAAATCGGTATTTTAGAAATAAAA
1 AGGTTGGAGTATCCTCGATGGTGGAAAATCGATATTTTAGAAATAAAA
95097 ACATCAATGA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
51 46 1.00
ACGTcount: A:0.34, C:0.09, G:0.27, T:0.29
Consensus pattern (51 bp):
AGGTTGGAGTATCCTCGATGGTGGAAAATCGATATTTTAGAAATAAAACTG
Found at i:96336 original size:29 final size:29
Alignment explanation
Indices: 96294--96355 Score: 124
Period size: 29 Copynumber: 2.1 Consensus size: 29
96284 TGCATGAACC
96294 AAGATGACATTTTTATGGAAGGAAAATAT
1 AAGATGACATTTTTATGGAAGGAAAATAT
96323 AAGATGACATTTTTATGGAAGGAAAATAT
1 AAGATGACATTTTTATGGAAGGAAAATAT
96352 AAGA
1 AAGA
96356 AAGAACAAAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 33 1.00
ACGTcount: A:0.47, C:0.03, G:0.21, T:0.29
Consensus pattern (29 bp):
AAGATGACATTTTTATGGAAGGAAAATAT
Found at i:98420 original size:62 final size:62
Alignment explanation
Indices: 98238--98641 Score: 483
Period size: 62 Copynumber: 6.5 Consensus size: 62
98228 GAGAAGGCAT
* * *
98238 CCTGCTCTTTGAGGACTAAAGGGTGCCACCAACTCATGTGAGCTTTGAAAAGAAAAAAAAG-GCA
1 CCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAG--AAAAAAGTG-A
*
98302 TCCTGCTCTTTGAGGACTAAAAGGATGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAAGAGA
1 -CCTGCTCTTTGAGGACTAAAAGG-TGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAAGTGA
* * * * * *
98366 CTTGCTCTTTGAGGACTAAAAGGTGCAACCAACTCGTGTAGGCTTTAAAAAGAAAAAGGTGT
1 CCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAAGTGA
* * * *
98428 CTTGCTTTTTGAGGAC-AAAAGGATGCCACCAACTCATATGGGCTTTGAAAAG-AAAAAG-GCA
1 CCTGCTCTTTGAGGACTAAAAGG-TGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAAGTG-A
* * *
98489 TCCTGCTCTTTAAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGTGT
1 -CCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAAGTGA
* * * * * *
98552 CCTGCTCTTTAAGGACTAAAAGGTGCCACCAACTCGTGTGGGTTTTAAAAAGTAAAAGGTGT
1 CCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAAGTGA
* *
98614 CCTGCTCTTTAAGGACTAAAGGGTGCCA
1 CCTGCTCTTTGAGGACTAAAAGGTGCCA
98642 GAAAATTGGC
Statistics
Matches: 302, Mismatches: 29, Indels: 19
0.86 0.08 0.05
Matches are distributed among these distances:
60 1 0.00
61 11 0.04
62 198 0.66
63 33 0.11
64 9 0.03
65 23 0.08
66 27 0.09
ACGTcount: A:0.33, C:0.19, G:0.24, T:0.24
Consensus pattern (62 bp):
CCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAAGTGA
Found at i:98499 original size:124 final size:124
Alignment explanation
Indices: 98231--98641 Score: 533
Period size: 124 Copynumber: 3.3 Consensus size: 124
98221 AAAATAGGAG
* * * *
98231 AAGGCATCCTGCTCTTTGAGGACTAAAGGGTGCCACCAACTCATGTGAGCTTTGAAAAGAAAAAA
1 AAGGCATCCTGCTCTTTAAGGACTAAAAGGTGCCACCAACTCGTGTG-GCTTT--AAA-AAGAAA
**
98296 AAGGCATCCTGCTCTTTGAGGACTAAAAGGATGCCACCAACTCGTGTGGGCTTTGAAAAGAAAA
62 AAGGTGTCCTGCTCTTTGAGGACTAAAAGGATGCCACCAACTCGTGTGGGCTTTGAAAAG-AAA
* * *
98360 AAGAG-A-CTTGCTCTTTGAGGACTAAAAGGTGCAACCAACTCGTGTAGGCTTTAAAAAGAAAAA
1 AAG-GCATCCTGCTCTTTAAGGACTAAAAGGTGCCACCAACTCGTGT-GGCTTTAAAAAGAAAAA
* * * *
98423 GGTGTCTTGCTTTTTGAGGAC-AAAAGGATGCCACCAACTCATATGGGCTTTGAAAAGAAA
64 GGTGTCCTGCTCTTTGAGGACTAAAAGGATGCCACCAACTCGTGTGGGCTTTGAAAAGAAA
*
98483 AAGGCATCCTGCTCTTTAAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAG
1 AAGGCATCCTGCTCTTTAAGGACTAAAAGGTGCCACCAACTCGTGT-GGCTTTAAAAAGAAAAAG
* * * *
98548 GTGTCCTGCTCTTTAAGGACTAAAAGG-TGCCACCAACTCGTGTGGGTTTTAAAAAGTAA
65 GTGTCCTGCTCTTTGAGGACTAAAAGGATGCCACCAACTCGTGTGGGCTTTGAAAAGAAA
** *
98607 AAGGTGTCCTGCTCTTTAAGGACTAAAGGGTGCCA
1 AAGGCATCCTGCTCTTTAAGGACTAAAAGGTGCCA
98642 GAAAATTGGC
Statistics
Matches: 250, Mismatches: 27, Indels: 15
0.86 0.09 0.05
Matches are distributed among these distances:
122 1 0.00
123 7 0.03
124 163 0.65
125 30 0.12
126 3 0.01
128 40 0.16
129 5 0.02
130 1 0.00
ACGTcount: A:0.33, C:0.19, G:0.24, T:0.24
Consensus pattern (124 bp):
AAGGCATCCTGCTCTTTAAGGACTAAAAGGTGCCACCAACTCGTGTGGCTTTAAAAAGAAAAAGG
TGTCCTGCTCTTTGAGGACTAAAAGGATGCCACCAACTCGTGTGGGCTTTGAAAAGAAA
Found at i:98569 original size:186 final size:188
Alignment explanation
Indices: 98237--98641 Score: 625
Period size: 186 Copynumber: 2.2 Consensus size: 188
98227 GGAGAAGGCA
*
98237 TCCTGCTCTTTGAGGACTAAAGGGTGCCACCAACTCATGTGAGCTTTGAAAAGAAAAAAAAGGCA
1 TCCTGCTCTTTGAGGACTAAAGGGTGCCACCAACTCATATGAGCTTTGAAAAG--AAAAAAGGCA
*
98302 TCCTGCTCTTTGAGGACTAAAAGGATGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAAGAGAC
64 TCCTGCTCTTTAAGGACTAAAAGGATGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAAGAGAC
* *
98367 TTGCTCTTTGAGGACTAAAAGGTGCAACCAACTCGTGTAGGCTTTAAAAAGAAAAAGGTG
129 CTGCTCTTTAAGGACTAAAAGGTGCAACCAACTCGTGTAGGCTTTAAAAAGAAAAAGGTG
* * * * *
98427 TCTTGCTTTTTGAGGACAAAAGGATGCCACCAACTCATATGGGCTTTGAAAAG-AAAAAGGCATC
1 TCCTGCTCTTTGAGGACTAAAGGGTGCCACCAACTCATATGAGCTTTGAAAAGAAAAAAGGCATC
* * *
98491 CTGCTCTTTAAGGACTAAAAGG-TGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGTGTCCT
66 CTGCTCTTTAAGGACTAAAAGGATGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAAGAGACCT
* * * *
98555 GCTCTTTAAGGACTAAAAGGTGCCACCAACTCGTGTGGGTTTTAAAAAGTAAAAGGTG
131 GCTCTTTAAGGACTAAAAGGTGCAACCAACTCGTGTAGGCTTTAAAAAGAAAAAGGTG
*
98613 TCCTGCTCTTTAAGGACTAAAGGGTGCCA
1 TCCTGCTCTTTGAGGACTAAAGGGTGCCA
98642 GAAAATTGGC
Statistics
Matches: 194, Mismatches: 21, Indels: 4
0.89 0.10 0.02
Matches are distributed among these distances:
186 115 0.59
187 32 0.16
190 47 0.24
ACGTcount: A:0.33, C:0.19, G:0.24, T:0.24
Consensus pattern (188 bp):
TCCTGCTCTTTGAGGACTAAAGGGTGCCACCAACTCATATGAGCTTTGAAAAGAAAAAAGGCATC
CTGCTCTTTAAGGACTAAAAGGATGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAAGAGACCT
GCTCTTTAAGGACTAAAAGGTGCAACCAACTCGTGTAGGCTTTAAAAAGAAAAAGGTG
Found at i:99099 original size:158 final size:157
Alignment explanation
Indices: 98897--100525 Score: 440
Period size: 159 Copynumber: 10.3 Consensus size: 157
98887 AACTAATCCC
* * * * * *
98897 CATTCTTTTCAG-GATTAAGCACCATAAACATAGTATTCTCATTAGGATGCATGATATTGATGCT
1 CATTCTTTTC-GTGATTAGGCACAATAAACACATTCTCCTCATTAGGATGCATGATATTGATGCT
*
98961 TTGGTTTCACAAGAAAGGCTTTTATCCCACCAATTTTTGA-AAAGTCTAAA-TTCGTGCCTTAAA
65 TTGGTTTCACAAGAAAGGCTTTT-TCCCACCAATTTTTGATAAAGTC-AAAGTTCGT-CCTCAAA
* *
99024 AGAGACAAACATGGATTCTAGTAATGATCTT
127 AGAGACAAACATGGATTCTCGTAATAATCTT
* ** *
99055 CATTCATTTT-GTGATTAGGCACAATAAACACATTCTCCTAATTAGGATAAATGATATTGATGAA
1 CATTC-TTTTCGTGATTAGGCACAATAAACACATTCTCCTCATTAGGATGCATGATATTGATG-C
** * * * ** * * * *
99119 TTTCTTTTGA-ATTGAAA-TCATTTCTTTGC-CCTATTTTTCATAAAATCAAAGTTCAT-CTCAA
64 TTTGGTTTCACA-AGAAAGGC-TTT-TTCCCACCAATTTTTGATAAAGTCAAAGTTCGTCCTCAA
* * * * * *
99180 TA-AGACAAGCATCGATTCTCGTAACAGTCTC
126 AAGAGACAAACATGGATTCTCGTAATAATCTT
* ** * * * * * *
99211 CAATCTTTTCAAGATTAGGAAGCCA-AAACAAATT-TCCTTCTTTAGGATTCATGAAATTGATGC
1 CATTCTTTTCGTGATTAGGCA-CAATAAACACATTCTCC-TCATTAGGATGCATGATATTGATGC
** ** * ** * * **
99274 TTTGGGGTCACAAGAAAAACTTTTCTTTCCTTC-ATTTTTTATAGAA-TCAAAGGTT-GTCTTTT
64 TTTGGTTTCACAAGAAAGGC-TTT-TTCCCACCAATTTTTGATA-AAGTCAAA-GTTCGTCCTCA
* * * * * *
99336 AAATACGACAAAC-TAGAATACTCTTACTAATCCT
125 AAAGA-GACAAACAT-GGATTCTCGTAATAATCTT
* * * * ** * *
99370 CATTCTTTTCAG-GATTAAGCACCATAAACACAGTCTTCTCATTAGGATGCACAACATTGATGCG
1 CATTCTTTTC-GTGATTAGGCACAATAAACACATTCTCCTCATTAGGATGCATGATATTGATGCT
* *
99434 TTGGTTTCACAAGAAAGGCTTTTGTCCCACCAATTTTTGA-AAAGTCTAAGTTCGTGCCTCAAAT
65 TTGGTTTCACAAGAAAGGCTTTT-TCCCACCAATTTTTGATAAAGTCAAAGTTCGT-CCTCAAAA
* *
99498 GAGACAAACTTGGATTCTGGTAATAATCTT
128 GAGACAAACATGGATTCTCGTAATAATCTT
* * * ** * * *
99528 CATTCATTTT-GTGATTAGGCACAATAAACACATTTTTCTCATTAAGATAAATAACATTGATGAT
1 CATTC-TTTTCGTGATTAGGCACAATAAACACATTCTCCTCATTAGGATGCATGATATTGATG-C
** * ** * * * * ** *
99592 TTTCTTTTGA-ATCAAAGTCTTTTCTTTGCC-CTATTTTTTGCA-AAA-TCAAAGTTTATCCCTT
64 TTTGGTTTCACAAGAAAGGC--TT-TTTCCCACCAATTTTTG-ATAAAGTCAAAGTTCGT-CCTC
* * * *
99653 AAATA-AGACAAGCATGGATTCTTGTAATAGTCTC
124 AAA-AGAGACAAACATGGATTCTCGTAATAATCTT
** * * * * * * *
99687 CATT-TGTTTCAAGATTGGGAAGCCA-AAACACATAC-CCTTCATTAGGATACAAGACATTTGAT
1 CATTCT-TTTCGTGATTAGGCA-CAATAAACACATTCTCC-TCATTAGGATGCATGATA-TTGAT
** * * * *
99749 GCTTTGGTGTTGCA-AA-AAAAAC-TTTTCCTTTCATC-GTTTATGATAGAA-TCAAAGTTTGTC
62 GCTTTGGT-TT-CACAAGAAAGGCTTTTTCC---CACCAATTTTTGATA-AAGTCAAAGTTCGTC
* * ** ** * **
99809 TCTTAAATA-AGACAAACATGAAGACTCACACTAATCCC
121 -CTCAAA-AGAGACAAACATGGATTCTCGTAATAATCTT
* ** * * * * * ** **
99847 CATTGTTTTCAAGATTAGCCACCATAAACATAGTCTTCTCATTAGGATATACAATATTGATGCTT
1 CATTCTTTTCGTGATTAGGCACAATAAACACATTCTCCTCATTAGGATGCATGATATTGATGCTT
** * * * * *
99912 TGGTTTC-GTAGCAAAAGCTTTCTTCCCACCAATTTTTG-TAAAGTCTAAGTTTGTATCTCAAAT
66 TGGTTTCACAAG-AAAGGCTTT-TTCCCACCAATTTTTGATAAAGTCAAAGTTCGT-CCTCAAAA
* * * * * * *
99975 GTGTCAAACACGAATTATAGTAACAATCTT
128 GAGACAAACATGGATTCTCGTAATAATCTT
* * ** *
100005 CATTCGTTTTTGTGATTAGGCACAATAAACCCATTCTCCTCATTAGGATAAATGATATTGATGAT
1 CATTC-TTTTCGTGATTAGGCACAATAAACACATTCTCCTCATTAGGATGCATGATATTGATGCT
* * * **** * *** *
100070 TT--TCTTCTGCATGGAAA-TCTTTTCTTTGTCCTATTTTCCTTAAAATCAAAGTT-GAT-CTCA
65 TTGGT-TTC-ACA-AGAAAGGCTTTT-TCCCACCAATTTTTGATAAAGTCAAAGTTCG-TCCTCA
* * * * * *
100130 ATA-AGACAAGCATCGATTCTCGTAACAGTCTC
125 AAAGAGACAAACATGGATTCTCGTAATAATCTT
* ** * * * * * *
100162 CAATCTTTTCAAGATTAGGAAGCCA-AAACAAATT-TCCTTCCTTAGGATTCATGAAATTGATGC
1 CATTCTTTTCGTGATTAGGCA-CAATAAACACATTCTCC-TCATTAGGATGCATGATATTGATGC
** ** ** * **
100225 TTTGGGGTCACAAGAAAAACTTTTCTTTCCTTCC--TTTTTTATAGAA-TCAAAGTTTATCTCTT
64 TTTGGTTTCACAAGAAAGGC--TT-TTTCCCACCAATTTTTGATA-AAGTCAAAGTTCGTC-C-T
* ** * * * * ** *
100287 GATTA-AGACAAAAATGAATACTCATACCAATCTC
123 CAAAAGAGACAAACATGGATTCTCGTAATAATCTT
* * * * * * * * * *
100321 CTTTCTTTTCAG-GATTAGGCACCATAAATATAGTCTTCTCAATAGGATACACGAAATTGATGCT
1 CATTCTTTTC-GTGATTAGGCACAATAAACACATTCTCCTCATTAGGATGCATGATATTGATGCT
** * * * *
100385 TTGGTTTTGCAAGAAAGGCTTTCTTCCCACCAATTTCTG-TAAAGTCTATGTTCGTGCCTCAAAT
65 TTGGTTTCACAAGAAAGGCTTT-TTCCCACCAATTTTTGATAAAGTCAAAGTTCGT-CCTCAAAA
* * * *
100449 GAGACAAACATAGATTCTAGTAATGATTTT
128 GAGACAAACATGGATTCTCGTAATAATCTT
*
100479 CATTCAGTTT-GTGATTAGGCACAATAAACACATTCTCCTCATTAGGA
1 CATTC-TTTTCGTGATTAGGCACAATAAACACATTCTCCTCATTAGGA
100526 AAAATGATAT
Statistics
Matches: 1054, Mismatches: 322, Indels: 190
0.67 0.21 0.12
Matches are distributed among these distances:
155 23 0.02
156 151 0.14
157 73 0.07
158 279 0.26
159 396 0.38
160 121 0.11
161 11 0.01
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (157 bp):
CATTCTTTTCGTGATTAGGCACAATAAACACATTCTCCTCATTAGGATGCATGATATTGATGCTT
TGGTTTCACAAGAAAGGCTTTTTCCCACCAATTTTTGATAAAGTCAAAGTTCGTCCTCAAAAGAG
ACAAACATGGATTCTCGTAATAATCTT
Found at i:99778 original size:473 final size:469
Alignment explanation
Indices: 98730--100775 Score: 2410
Period size: 473 Copynumber: 4.3 Consensus size: 469
98720 AGTCTACAAA
* *
98730 AATAGTCTCCATTCTTTTCGAGATTAGGAAGCC-AAACACATACCCTTCATTAGTATACATGACA
1 AATAGTCTCCATT-TTTTCAAGATTAGGAAGCCAAAACACATACCCTTCATTAGGATACATGACA
* * * * ** *
98794 TTGATGCTTTGGTG-CTGCATGACAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGT
65 TTGATGCTTTGGTGTC-ACAAGAAAAAC--TTCTTTCCTTCATTTTTGATAGAATCAAAGTTTGT
* *
98858 CTCTTAAATAAGACAAACATGAACACTCAAACTAATCCCCATTCTTTTCAGGATTAAGCACCATA
127 CTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAAGCACCATA
* * **
98923 AACATAGTATTCTCATTAGGATGCATGATATTGATGCTTTGGTTTCACAAGAAAGGCTTT-TATC
192 AACATAGTCTTCTCATTAGGATACACAATATTGATGCTTTGGTTTCACAAGAAAGGCTTTCT-TC
* * * *
98987 CCACCAATTTTTGAAAAGTCTAAATTCGTGCCTTAAAAGAGACAAACATGGATTCTAGTAATGAT
256 CCACCAATTTTTGAAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATAAT
*
99052 CTTCATTCATTTTGTGATTAGGCACAATAAACACATTCTCCTAATTAGGATAAATGATATTGATG
321 CTTCATTCATTTTGTGATTAGGCACAATAAACACATTCTCCTCATTAGGATAAATGATATTGATG
* * *
99117 AATTTCTTTTGAATTGAAATCATTTCTTTGCCCTATTTT-TCATAAAATCAAAGTTCATCTCAAT
386 ATTTTCTTTTGAA-TGAAATCTTTTCTTTGCCCTATTTTCT-TTAAAATCAAAGTTCATCTCAAT
99181 AAGACAAGCATCGATTCTCGT
449 AAGACAAGCATCGATTCTCGT
* * * ** * * *
99202 AACAGTCTCCAATCTTTTCAAGATTAGGAAGCCAAAACAAATTTCCTTCTTTAGGATTCATGAAA
1 AATAGTCTCC-ATTTTTTCAAGATTAGGAAGCCAAAACACATACCCTTCATTAGGATACATGACA
* * *
99267 TTGATGCTTTGGGGTCACAAGAAAAACTTTTCTTTCCTTCATTTTTTATAGAATCAAAGGTTGTC
65 TTGATGCTTTGGTGTCACAAGAAAAAC--TTCTTTCCTTCATTTTTGATAGAATCAAAGTTTGTC
* * * *
99332 TTTTAAATACGACAAAC-TAGAATACTCTTACTAATCCTCATTCTTTTCAGGATTAAGCACCATA
128 TCTTAAATAAGACAAACAT-GAATACTCATACTAATCCCCATTCTTTTCAGGATTAAGCACCATA
* * * *
99396 AACACAGTCTTCTCATTAGGATGCACAACATTGATGCGTTGGTTTCACAAGAAAGGCTTT-TGTC
192 AACATAGTCTTCTCATTAGGATACACAATATTGATGCTTTGGTTTCACAAGAAAGGCTTTCT-TC
* *
99460 CCACCAATTTTTGAAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACTTGGATTCTGGTAATAAT
256 CCACCAATTTTTGAAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATAAT
* * * * *
99525 CTTCATTCATTTTGTGATTAGGCACAATAAACACATTTTTCTCATTAAGATAAATAACATTGATG
321 CTTCATTCATTTTGTGATTAGGCACAATAAACACATTCTCCTCATTAGGATAAATGATATTGATG
* * * *
99590 ATTTTCTTTTGAATCAAAGTCTTTTCTTTGCCCTATTTT-TTGCAAAATCAAAGTTTATCCCTTA
386 ATTTTCTTTTGAATGAAA-TCTTTTCTTTGCCCTATTTTCTT-TAAAATCAAAGTTCAT--C-TC
* *
99654 AATAAGACAAGCATGGATTCTTGT
446 AATAAGACAAGCATCGATTCTCGT
* *
99678 AATAGTCTCCATTTGTTTCAAGATTGGGAAGCCAAAACACATACCCTTCATTAGGATACAAGACA
1 AATAGTCTCCATTT-TTTCAAGATTAGGAAGCCAAAACACATACCCTTCATTAGGATACATGACA
** *
99743 TTTGATGCTTTGGTGTTGCAAAAAAAAC-T-TTTCCTTTCATCGTTTATGATAGAATCAAAGTTT
65 -TTGATGCTTTGGTGTCACAAGAAAAACTTCTTTCC-TTCAT--TTT-TGATAGAATCAAAGTTT
* * * *
99806 GTCTCTTAAATAAGACAAACATGAAGACTCACACTAATCCCCATTGTTTTCAAGATT-AGCCACC
125 GTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAAG-CACC
* ** *
99870 ATAAACATAGTCTTCTCATTAGGATATACAATATTGATGCTTTGGTTTC-GTAGCAAAAGCTTTC
189 ATAAACATAGTCTTCTCATTAGGATACACAATATTGATGCTTTGGTTTCACAAG-AAAGGCTTTC
* * ** * * * * * *
99934 TTCCCACCAATTTTTGTAAAGTCTAAGTTTGTATCTCAAATGTGTCAAACACGAATTATAGTAAC
253 TTCCCACCAATTTTTGAAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAT
* *
99999 AATCTTCATTCGTTTTTGTGATTAGGCACAATAAACCCATTCTCCTCATTAGGATAAATGATATT
318 AATCTTCATTC-ATTTTGTGATTAGGCACAATAAACACATTCTCCTCATTAGGATAAATGATATT
* * * * *
100064 GATGATTTTCTTCTGCATGGAAATCTTTTCTTTGTCCTATTTTCCTTAAAATCAAAGTTGATCTC
382 GATGATTTTCTTTTGAAT-GAAATCTTTTCTTTGCCCTATTTTCTTTAAAATCAAAGTTCATCTC
100129 AATAAGACAAGCATCGATTCTCGT
446 AATAAGACAAGCATCGATTCTCGT
* * * ** * * *
100153 AACAGTCTCCAATCTTTTCAAGATTAGGAAGCCAAAACAAATTTCCTTCCTTAGGATTCATGAAA
1 AATAGTCTCC-ATTTTTTCAAGATTAGGAAGCCAAAACACATACCCTTCATTAGGATACATGACA
* * * *
100218 TTGATGCTTTGGGGTCACAAGAAAAACTTTTCTTTCCTTCCTTTTTTATAGAATCAAAGTTTATC
65 TTGATGCTTTGGTGTCACAAGAAAAAC--TTCTTTCCTTCATTTTTGATAGAATCAAAGTTTGTC
* * * * * * *
100283 TCTTGATTAAGACAAAAATGAATACTCATACCAATCTCCTTTCTTTTCAGGATTAGGCACCATAA
128 TCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAAGCACCATAA
* * **
100348 ATATAGTCTTCTCAATAGGATACACGAA-ATTGATGCTTTGGTTTTGCAAGAAAGGCTTTCTTCC
193 ACATAGTCTTCTCATTAGGATACAC-AATATTGATGCTTTGGTTTCACAAGAAAGGCTTTCTTCC
* * * * * *
100412 CACCAATTTCTGTAAAGTCTATGTTCGTGCCTCAAATGAGACAAACATAGATTCTAGTAATGATT
257 CACCAATTTTTGAAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATAATC
* * **
100477 TTCATTCAGTTTGTGATTAGGCACAATAAACACATTCTCCTCATTAGGAAAAATGATATTGACAA
322 TTCATTCATTTTGTGATTAGGCACAATAAACACATTCTCCTCATTAGGATAAATGATATTGATGA
* * *
100542 TTTTC-TTTCACATGAAAATCTTTTCTTTGCCCTATTTTCCTTTTAAAAACAAAGTTCATACCTT
387 TTTTCTTTTGA-ATG-AAATCTTTTCTTTGCCCTATTTT-C-TTTAAAATCAAAGTTCAT--CTC
* *
100606 AATAAGACAAGCATTGATTCTCCT
446 AATAAGACAAGCATCGATTCTCGT
*
100630 AATAGTCTCCATTCTTTTCAAGATTTGGAAGCCAAAACACATACCCTTCATTAGGATACATGACA
1 AATAGTCTCCATT-TTTTCAAGATTAGGAAGCCAAAACACATACCCTTCATTAGGATACATGACA
* * ** * * ** * *
100695 TTGATGCTTCGGTGCCGTAAGAAAAGCTTTTCATTCCACCGTTTTTGATAGAATCAAAGTTTATC
65 TTGATGCTTTGGTGTCACAAGAAAAAC--TTCTTTCCTTCATTTTTGATAGAATCAAAGTTTGTC
*
100760 -CCTAAATTAAGACAAA
128 TCTTAAA-TAAGACAAA
100776 TTACGCATCG
Statistics
Matches: 1333, Mismatches: 203, Indels: 71
0.83 0.13 0.04
Matches are distributed among these distances:
472 35 0.03
473 442 0.33
474 210 0.16
475 101 0.08
476 90 0.07
477 349 0.26
478 102 0.08
479 4 0.00
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.35
Consensus pattern (469 bp):
AATAGTCTCCATTTTTTCAAGATTAGGAAGCCAAAACACATACCCTTCATTAGGATACATGACAT
TGATGCTTTGGTGTCACAAGAAAAACTTCTTTCCTTCATTTTTGATAGAATCAAAGTTTGTCTCT
TAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAAGCACCATAAACA
TAGTCTTCTCATTAGGATACACAATATTGATGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACC
AATTTTTGAAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATAATCTTCA
TTCATTTTGTGATTAGGCACAATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTT
CTTTTGAATGAAATCTTTTCTTTGCCCTATTTTCTTTAAAATCAAAGTTCATCTCAATAAGACAA
GCATCGATTCTCGT
Found at i:100701 original size:951 final size:949
Alignment explanation
Indices: 98730--102802 Score: 4667
Period size: 951 Copynumber: 4.3 Consensus size: 949
98720 AGTCTACAAA
* *
98730 AATAGTCTCCATTCTTTTCGAGATTAGGAAGCC-AAACACATACCCTTCATTAGTATACATGACA
1 AATAGTCTCCATTCTTTTCAAGATTAGGAAGCCAAAACACATACCCTTCATTAGGATACATGACA
* * *
98794 TTGATGCTTTGGTGCTGCATGACAAGCTTTT-CTTTCCACCGTTTTTGATAGAATCAAAGTTTGT
66 TTGATGCTTTGGTGTTGCAAGAAAAGCTTTTCCTTT-CACCGTTTTTGATAGAATCAAAGTTTGT
* * *
98858 CTCTTAAATAAGACAAACATGAACACTCAAACTAATCCCCATTCTTTTCAGGATTAAGCACCATA
130 CTCTTAAATAAGACAAACATGAATACTCACACTAATCCCCATTCTTTTCAAGATT-AGCACCATA
* * * *
98923 AACATAGTATTCTCATTAGGATGCATGATATTGATGCTTTGGTTTCACAAGAAAGGCTTT-TATC
194 AACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCT-TC
* * * * *
98987 CCACCAATTTTTGAAAAGTCTAAATTCGTGCCTTAAAAGAGACAAACATGGATTCTAGTAATGAT
258 CCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGAATTCTAGTAATGAT
*
99052 CTTCATTCATTTTGTGATTAGGCACAATAAACACATTCTCCTAATTAGGATAAATGATATTGATG
323 CTTCATTCATTTTGTGATTAGGCACAATAAACACATTCTCCTCATTAGGATAAATGATATTGATG
* * * * *
99117 AATTTCTTTTGAATTGAAATCATTTCTTTGCCCTATTTTTCATAAAATCAAAGTTCAT-CTCAAT
388 ATTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCTCAAT
*
99181 AAGACAAGCATCGATTCTCGTAACAGTCTCCAATCTTTTCAAGATTAGGAAGCCAAAACAAATTT
453 AAGACAAGCATCGATTCTCGTAACAGTCTCCAATCTTTTCAAGATTAGGAAGCCAAAACAAATTC
* * *
99246 CCTTCTTTAGGATTCATGAAATTGATGCTTTGGGGTCACAAGAAAAACTTTTCTTTCCTTCATTT
518 CCTTCATTAGGATACATGAAATTGATGCTTTGGGGTCACAAGAAAAACTTTTCTTTCCTTCCTTT
* * * * * *
99311 TTTATAGAATCAAAGGTTGTCTTTTAAATACGAC-AAACTAGAATACTCTTACTAATC-CTCATT
583 TTTATAGAATCAAAGTTTATCTCTTAAATAAGACAAAAAT-GAATACTCATACTAATCTC-CATT
* * * * *
99374 CTTTTCAGGATTAAGCACCATAAACACAGTCTTCTCATTAGGATGCACAACATTGATGCGTTGGT
646 CTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACAATATTGATGCTTTGGT
*
99439 TTCACAAGAAAGGCTTT-TGTCCCACCAATTTTTGAAAAGTCTAAGTTCGTGCCTCAAATGAGAC
711 TTCACAAGAAAGGCTTTCT-TCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGAC
* * * * * *
99503 AAACTTGGATTCTGGTAATAATCTTCATTCATTTTGTGATTAGGCACAATAAACACATTTTTCTC
775 AAACATAGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACAATAAACACATTCTCCTC
* * * * * * *
99568 ATTAAGATAAATAACATTGATGATTTTCTTTTGA-ATCAAAGTCTTTTCTTTGCCCTATTTTTTG
840 ATTAGGATAAATGATATTGACGATTTTCTTTT-ACATGAAAATCTTTTCTTTGCCCTATTTTTTT
* * * * **
99632 CAAAATCAAAGTTTATCCCTTAAATAAGACAAGCATGGATTCTTGT
904 TAAAAACAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCAT
* *
99678 AATAGTCTCCATT-TGTTTCAAGATTGGGAAGCCAAAACACATACCCTTCATTAGGATACAAGAC
1 AATAGTCTCCATTCT-TTTCAAGATTAGGAAGCCAAAACACATACCCTTCATTAGGATACATGAC
* * * *
99742 ATTTGATGCTTTGGTGTTGCAAAAAAAACTTTTCCTTTCATCGTTTATGATAGAATCAAAGTTTG
65 A-TTGATGCTTTGGTGTTGCAAGAAAAGCTTTTCCTTTCACCGTTTTTGATAGAATCAAAGTTTG
* *
99807 TCTCTTAAATAAGACAAACATGAAGACTCACACTAATCCCCATTGTTTTCAAGATTAGCCACCAT
129 TCTCTTAAATAAGACAAACATGAATACTCACACTAATCCCCATTCTTTTCAAGATTAG-CACCAT
* * * *
99872 AAACATAGTCTTCTCATTAGGATATACAATATTGATGCTTTGGTTTCG-TAGCAAAAGCTTTCTT
193 AAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAG-AAAGGCTTTCTT
* ** * * * * **
99936 CCCACCAATTTTTGTAAAGTCTAAGTTTGTATCTCAAATGTGTCAAACACGAATTATAGTAACAA
257 CCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGAATTCTAGTAATGA
* *
100001 TCTTCATTCGTTTTTGTGATTAGGCACAATAAACCCATTCTCCTCATTAGGATAAATGATATTGA
322 TCTTCATTC-ATTTTGTGATTAGGCACAATAAACACATTCTCCTCATTAGGATAAATGATATTGA
* * * *
100066 TGATTTTCTTCTGCATGGAAATCTTTTCTTTGTCCTATTTTCCTTAAAATCAAAGTTGAT-CTCA
386 TGATTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCTCA
100130 ATAAGACAAGCATCGATTCTCGTAACAGTCTCCAATCTTTTCAAGATTAGGAAGCCAAAACAAAT
451 ATAAGACAAGCATCGATTCTCGTAACAGTCTCCAATCTTTTCAAGATTAGGAAGCCAAAACAAAT
* * *
100195 TTCCTTCCTTAGGATTCATGAAATTGATGCTTTGGGGTCACAAGAAAAACTTTTCTTTCCTTCCT
516 TCCCTTCATTAGGATACATGAAATTGATGCTTTGGGGTCACAAGAAAAACTTTTCTTTCCTTCCT
* * * *
100260 TTTTTATAGAATCAAAGTTTATCTCTTGATTAAGACAAAAATGAATACTCATACCAATCTCCTTT
581 TTTTTATAGAATCAAAGTTTATCTCTTAAATAAGACAAAAATGAATACTCATACTAATCTCCATT
* *
100325 CTTTTCAGGATTAGGCACCATAAATATAGTCTTCTCAATAGGATACACGAA-ATTGATGCTTTGG
646 CTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACAC-AATATTGATGCTTTGG
** * *
100389 TTTTGCAAGAAAGGCTTTCTTCCCACCAATTTCTGTAAAGTCTATGTTCGTGCCTCAAATGAGAC
710 TTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGAC
* *
100454 AAACATAGATTCTAGTAATGATTTTCATTCAGTTTGTGATTAGGCACAATAAACACATTCTCCTC
775 AAACATAGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACAATAAACACATTCTCCTC
* * *
100519 ATTAGGAAAAATGATATTGACAATTTTCTTTCACATGAAAATCTTTTCTTTGCCCTATTTTCCTT
840 ATTAGGATAAATGATATTGACGATTTTCTTTTACATGAAAATCTTTTCTTTGCCCTATTTT--TT
* * *
100584 TTAAAAACAAAGTTCATACCTT-AATAAGACAAGCATTGATTCTCCT
903 TTAAAAACAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCAT
*
100630 AATAGTCTCCATTCTTTTCAAGATTTGGAAGCCAAAACACATACCCTTCATTAGGATACATGACA
1 AATAGTCTCCATTCTTTTCAAGATTAGGAAGCCAAAACACATACCCTTCATTAGGATACATGACA
* ** * * * *
100695 TTGATGCTTCGGTGCCGTAAGAAAAGCTTTTCATTCCACCGTTTTTGATAGAATCAAAGTTTATC
66 TTGATGCTTTGGTGTTGCAAGAAAAGCTTTTCCTTTCACCGTTTTTGATAGAATCAAAGTTTGTC
* *
100760 -CCTAAATTAAG----AC---AA-A-T-----T-A--CGCA------TC-------G-----TAA
131 TCTTAAA-TAAGACAAACATGAATACTCACACTAATCCCCATTCTTTTCAAGATTAGCACCATAA
* * * *
100789 ACATAGTCTTCTCATTAGGATACAC-AGTATTAATACTTTGGTTTCGCAAGAAAGGTTTTCATCC
195 ACATAGTCTTCTCATTAGGATACACGA-TATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCC
* * * * * *
100853 TACCACTTTTTGTAAAGTCTAGGTTCGTGCCTCTAATGAGA-GAACATGCATTCTAGTAATGATC
259 CACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGAATTCTAGTAATGATC
* * * *
100917 TTTATTCATTTTGTGATTAGGCACAATAAACACATTCCCCTCATTAAGATAAATGACATTGATGA
324 TTCATTCATTTTGTGATTAGGCACAATAAACACATTCTCCTCATTAGGATAAATGATATTGATGA
* * ** * *
100982 TTTTATTTTGCATTGAAATCTTTTCTTTGCCTTATTTTTTTTTTAGAATGAAAGTTCATACCTCA
389 TTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTA--TTTTCCTTAAAATCAAAGTTCAT-CCTCA
* * * * * * *
101047 GTTAGGACAAGCATTGATTCTCGTAGCAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACA
451 -ATAAGACAAGCATCGATTCTCGTAACAGTCTCCAATCTTTTCAAGATTAGGAAGCCAAAACAAA
* * * * ** * * *
101112 TACCCTTCATTAGGATACATGACATTGATGTTTTAGTATCACCAGAAAAGCTTTTCTTTCC--AC
515 TTCCCTTCATTAGGATACATGAAATTGATGCTTTGGGGTCACAAGAAAAACTTTTCTTTCCTTCC
* * ** * * *
101175 TGTTTTTGATAGAAACAAAGCTTGCCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCC
580 T-TTTTT-ATAGAATCAAAGTTTATCTCTTAAATAAGACAAAAATGAATACTCATACTAATCTCC
* * * ** * * *
101240 ATTCATTTCAGTATTAGGCACTATAAACATAGTCTTCTTGTTAGGGTACATAATAATGATGCTTT
643 ATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACAATATTGATGCTTT
** *
101305 GGTTTTGC-AGCAAAGGCTTTCTTCCTACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGA
708 GGTTTCACAAG-AAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGA
* ** * * ** *
101369 GATAAATTTGGATTTTA-TAATGATCTTCAGGCATTTTGTGATTAGGCACAATAAACACATTCTT
772 GACAAACATAGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACAATAAACACATTCTC
* *
101433 CTCTTTAGGATTAAA-GATATTGACGATTTTCTTTTGCATTG-AAATCTTTTCTTTGCCCTATTT
837 CTCATTAGGA-TAAATGATATTGACGATTTTCTTTTACA-TGAAAATCTTTTCTTTGCCCTATTT
* * * *
101496 TCTTTAAAATCAAAGTTCATCCGTTAAATAAAACAAGCATCGATTCTCGAT
900 TTTTTAAAAACAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTC-AT
* * ** * *
101547 ACA-A-TCTCCATTCTTTTCAAAATTAGGAAGCCAAAACAGATTTCCTTCAATAGGATACATGAT
1 A-ATAGTCTCCATTCTTTTCAAGATTAGGAAGCCAAAACACATACCCTTCATTAGGATACATGAC
* * * * *
101610 GTTGATG-GTTGGTGTCT-TAAAAAAAGCTTTT-CTTTCCACCGTTTTTGATA-AAGTCAAAGCA
65 ATTGATGCTTTGGTGT-TGCAAGAAAAGCTTTTCCTTT-CACCGTTTTTGATAGAA-TCAAAG-T
* * * * **
101671 TTGTCTCTTAAATAAGACAAATATTAATACTCACACTAATCCCCTTTCTTTTCAGGATTAGGCTG
126 TTGTCTCTTAAATAAGACAAACATGAATACTCACACTAATCCCCATTCTTTTCAAGATTA-GCAC
* * * *
101736 CAAAAACATAGTCTTCTCTTTAAGATACACGATATTGATGCTTTGGTTTTGCAAGAGAAGG-TTT
190 CATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAGA-AAGGCTTT
* * * * *
101800 CTTCCCTCTAATTTTTGTAAAGTCTATGCTCGTGCCTCAAATGAGACAAAAAT-AGATTCTAGTA
254 CTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGA-ATTCTAGTA
*
101864 ATGATCTTCATTCATTTTGTGATTACGCACAATAAACACATTCTCCTCATTAGGATAAATGATAT
318 ATGATCTTCATTCATTTTGTGATTAGGCACAATAAACACATTCTCCTCATTAGGATAAATGATAT
* * *
101929 TGATGATTTTCTTTTGCATAGAAATCTTTTCTTTTGCCCTATTTTCCTGAAAATAAAAGTTCATC
383 TGATGATTTTCTTTTGCATTGAAATCTTTTC-TTTGCCCTATTTTCCTTAAAATCAAAGTTCAT-
* * * * * * *
101994 CCTTGAATAAGATAAGCATTGACTCTCATAATAGTCTCCATTCTTTTCAAGATTAGGAAGCCAAA
446 CC-TCAATAAGACAAGCATCGATTCTCGTAACAGTCTCCAATCTTTTCAAGATTAGGAAGCCAAA
* * * * ** * * *
102059 ACACATTCCCTTCATTTGGATACTTGACATTGACACTTTGGTGTCGCAAGAAAAGCTTTTCTTT-
510 ACAAATTCCCTTCATTAGGATACATGAAATTGATGCTTTGGGGTCACAAGAAAAACTTTTCTTTC
* * * * * * * *
102123 -TTGCCATTTTTGATAGAATCAGAGTTTATCTTTTAAATAAGATAAATAA-GACTAGGT-GTGCT
575 CTT-CC-TTTTTTATAGAATCAAAGTTTATCTCTTAAATAAGACAAA-AATGAATA-CTCATACT
* * * *
102185 AATCTCCGTTCTTTCCAAGATTTGGCACCATAAACATAGTCTTCTCATTAGGATACACAATATTG
636 AATCTCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACAATATTG
* * *
102250 ATGCTTCGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAATCTAAGTTTGTGCCTC
701 ATGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTC
* * * * *
102315 AATTGAGACAAATATAGATTCTAGTAATGATCTTCATTTATTTTGTGTTTAGGCACAACAAACAC
766 AAATGAGACAAACATAGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACAATAAACAC
* * *
102380 ATTCTCCTCTTTAGGATAAATGATATTGATGATTTTCTTTTGCAT-AGAAATCTTTTCTTTGCCC
831 ATTCTCCTCATTAGGATAAATGATATTGACGATTTTCTTTTACATGA-AAATCTTTTCTTTGCCC
* * *
102444 TATTTTTCTGAAAATA-AAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCAT
895 TATTTTTTTTAAAA-ACAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCAT
* *
102499 AATAGTCTCCATTATTTTAAAGATT-GAGAA-CCAAAACACATACCCTTCATTAGGATACATGAC
1 AATAGTCTCCATTCTTTTCAAGATTAG-GAAGCCAAAACACATACCCTTCATTAGGATACATGAC
* ** * * * *
102562 ATTGAAGCTTTGGTGTCACGAGAAAAGCTTTTCTTTTCACCATTTTTGATAGAATCAAAGTTTAT
65 ATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTCCTTTCACCGTTTTTGATAGAATCAAAGTTTGT
* ** * * ** ** * * *
102627 CTTTTAAATAA-ATGAACAAGACTAGGCATGCTTATCCCCTTTTTTTTCAAGATTAGGCACCATA
130 CTCTTAAATAAGACAAACATGAATACTCACACTAATCCCCATTCTTTTCAAGATTA-GCACCATA
** * * *
102691 AATGTAGTCTTCTTATTAGGATACACGATATTGATGCTTTGGTTTCGCTAGAAAGGTTTTCTTCC
194 AACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCC
*
102756 CACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACA
259 CACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACA
102803 AGCATCGATT
Statistics
Matches: 2639, Mismatches: 386, Indels: 197
0.82 0.12 0.06
Matches are distributed among these distances:
913 82 0.03
914 28 0.01
915 163 0.06
916 90 0.03
917 115 0.04
918 281 0.11
920 1 0.00
921 1 0.00
923 2 0.00
924 1 0.00
925 1 0.00
928 2 0.00
930 1 0.00
931 1 0.00
933 2 0.00
934 3 0.00
936 1 0.00
937 1 0.00
939 2 0.00
942 1 0.00
943 1 0.00
944 2 0.00
947 4 0.00
948 29 0.01
949 33 0.01
950 230 0.09
951 698 0.26
952 518 0.20
953 331 0.13
954 14 0.01
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.36
Consensus pattern (949 bp):
AATAGTCTCCATTCTTTTCAAGATTAGGAAGCCAAAACACATACCCTTCATTAGGATACATGACA
TTGATGCTTTGGTGTTGCAAGAAAAGCTTTTCCTTTCACCGTTTTTGATAGAATCAAAGTTTGTC
TCTTAAATAAGACAAACATGAATACTCACACTAATCCCCATTCTTTTCAAGATTAGCACCATAAA
CATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCA
CCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGAATTCTAGTAATGATCTT
CATTCATTTTGTGATTAGGCACAATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATT
TTCTTTTGCATTGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCTCAATAAG
ACAAGCATCGATTCTCGTAACAGTCTCCAATCTTTTCAAGATTAGGAAGCCAAAACAAATTCCCT
TCATTAGGATACATGAAATTGATGCTTTGGGGTCACAAGAAAAACTTTTCTTTCCTTCCTTTTTT
ATAGAATCAAAGTTTATCTCTTAAATAAGACAAAAATGAATACTCATACTAATCTCCATTCTTTT
CAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACAATATTGATGCTTTGGTTTCAC
AAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACAT
AGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACAATAAACACATTCTCCTCATTAGG
ATAAATGATATTGACGATTTTCTTTTACATGAAAATCTTTTCTTTGCCCTATTTTTTTTAAAAAC
AAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCAT
Found at i:102242 original size:477 final size:475
Alignment explanation
Indices: 100786--102800 Score: 2345
Period size: 477 Copynumber: 4.2 Consensus size: 475
100776 TTACGCATCG
* * * * *
100786 TAAACATAGTCTTCTCATTAGGATACACAGTATTAATACTTTGGTTTCGCAAGAAAGGTTTTCAT
1 TAAACATAGTCTTCTCATTAGGATACACAATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTT
* * * * *
100851 -CCTACCACTTTTTGTAAAGTCTAGGTTCGTGCCTCTAATGAGA-GAACAT-GCATTCTAGTAAT
66 CCCT-CCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATAG-ATTCTAGTAAT
* * * *
100913 GATCTTTATTCATTTTGTGATTAGGCACAATAAACACATTCCCCTCATTAAGATAAATGACATTG
129 GATCTTCATTCATTTTGTGATTAGGCACAATAAACACATTCTCCTCATTAGGATAAATGATATTG
* * * ** * * * *
100978 ATGATTTTATTTTGCATTGAAATCTTTTCTTTGCCTTATTTTTTTTTTAGAATGAAAGTTCATAC
194 ATGATTTTCTTTTGCATAGAAATCTTTTCTTTGCCCTA--TTTTCCTGAAAATAAAAGTTCATCC
* * * * * ** *
101043 C-TCAGTTAGGACAAGCATTGATTCTCGTAGCAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAA
257 CTTGA-ATAAGACAAGCATCGATTCTCATAATAGTCTCCATTCTTTTCAAGATTAGGAAGCCAAA
** * * *
101107 ACACATACCCTTCATTAGGATACATGACATTGATGTTTTAGTATCACCAGAAAAGCTTTTCTTTC
321 ACACATACCCTTCATTAGGATACATGACATTGA-ACTTTGGTGTCACAAGAAAAGCTTTTCTTTC
** * * ** *
101172 CACTGTTTTTGATAGAAACAAAGCTTGCCTCTTAAATAAGACAAACATGAATAGTCATACTAATC
385 CACCATTTTTGATAGAATCAAAGTTTATCTCTTAAATAAGACAAACAAGAATAGTCATACTAATC
* * *
101237 CCCATTCATTTC-AGTATTAGGCACTA
450 CCCTTTCTTTTCAAG-ATTAGGCACCA
** * * * *
101263 TAAACATAGTCTTCTTGTTAGGGTACATAATAATGATGCTTTGGTTTTGC-AGCAAAGGCTTTCT
1 TAAACATAGTCTTCTCATTAGGATACACAATATTGATGCTTTGGTTTCGCAAG-AAAGGCTTTCT
* * * *
101327 T-CCTACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGATAAATTTGGATTTTA-TAAT
65 TCCCT-CCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATAGATTCTAGTAAT
** * *
101390 GATCTTCAGGCATTTTGTGATTAGGCACAATAAACACATTCTTCTCTTTAGGATTAAA-GATATT
129 GATCTTCATTCATTTTGTGATTAGGCACAATAAACACATTCTCCTCATTAGGA-TAAATGATATT
* * * * * *
101454 GACGATTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTATTTTCTTTAAAATCAAAGTTCATCCG
193 GATGATTTTCTTTTGCATAGAAATCTTTTCTTTGCCCTATTTTCCTGAAAATAAAAGTTCATCCC
* * *
101519 TTAAATAAAACAAGCATCGATTCTCGATACA-A-TCTCCATTCTTTTCAAAATTAGGAAGCCAAA
258 TTGAATAAGACAAGCATCGATTCTC-ATA-ATAGTCTCCATTCTTTTCAAGATTAGGAAGCCAAA
* ** * ** *** ** *
101582 ACAGATTTCCTTCAATAGGATACATGATGTTGATGGTTGGTGTCTTAAAAAAAGCTTTTCTTTCC
321 ACACATACCCTTCATTAGGATACATGACATTGAACTTTGGTGTCACAAGAAAAGCTTTTCTTTCC
* * * * ** * *
101647 ACCGTTTTTGATA-AAGTCAAAGCATTGTCTCTTAAATAAGACAAATATTAATACTCACACTAAT
386 ACCATTTTTGATAGAA-TCAAAG-TTTATCTCTTAAATAAGACAAACAAGAATAGTCATACTAAT
* **
101711 CCCCTTTCTTTTCAGGATTAGGCTGCA
449 CCCCTTTCTTTTCAAGATTAGGCACCA
* * * * *
101738 AAAACATAGTCTTCTCTTTAAGATACACGATATTGATGCTTTGGTTTTGCAAGAGAAGG-TTTCT
1 TAAACATAGTCTTCTCATTAGGATACACAATATTGATGCTTTGGTTTCGCAAGA-AAGGCTTTCT
* * * *
101802 TCCCTCTAATTTTTGTAAAGTCTATGCTCGTGCCTCAAATGAGACAAAAATAGATTCTAGTAATG
65 TCCCTCCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATAGATTCTAGTAATG
*
101867 ATCTTCATTCATTTTGTGATTACGCACAATAAACACATTCTCCTCATTAGGATAAATGATATTGA
130 ATCTTCATTCATTTTGTGATTAGGCACAATAAACACATTCTCCTCATTAGGATAAATGATATTGA
101932 TGATTTTCTTTTGCATAGAAATCTTTTCTTTTGCCCTATTTTCCTGAAAATAAAAGTTCATCCCT
195 TGATTTTCTTTTGCATAGAAATCTTTTC-TTTGCCCTATTTTCCTGAAAATAAAAGTTCATCCCT
* * *
101997 TGAATAAGATAAGCATTGACTCTCATAATAGTCTCCATTCTTTTCAAGATTAGGAAGCCAAAACA
259 TGAATAAGACAAGCATCGATTCTCATAATAGTCTCCATTCTTTTCAAGATTAGGAAGCCAAAACA
* * * * ***
102062 CATTCCCTTCATTTGGATACTTGACATTGACACTTTGGTGTCGCAAGAAAAGCTTTTCTTTTTGC
324 CATACCCTTCATTAGGATACATGACATTGA-ACTTTGGTGTCACAAGAAAAGCTTTTCTTTCCAC
* * * * * * * *
102127 CATTTTTGATAGAATCAGAGTTTATCTTTTAAATAAGATAAATAAGACTAGGT-GTGCTAATCTC
388 CATTTTTGATAGAATCAAAGTTTATCTCTTAAATAAGACAAACAAGAATA-GTCATACTAATCCC
* * *
102191 CGTTCTTTCCAAGATTTGGCACCA
452 CTTTCTTTTCAAGATTAGGCACCA
* *
102215 TAAACATAGTCTTCTCATTAGGATACACAATATTGATGCTTCGGTTTCACAAGAAAGGCTTTCTT
1 TAAACATAGTCTTCTCATTAGGATACACAATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTT
* * * *
102280 CCCACCAATTTTTGTAAAATCTAAGTTTGTGCCTCAATTGAGACAAATATAGATTCTAGTAATGA
66 CCCTCCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATAGATTCTAGTAATGA
* * * *
102345 TCTTCATTTATTTTGTGTTTAGGCACAACAAACACATTCTCCTCTTTAGGATAAATGATATTGAT
131 TCTTCATTCATTTTGTGATTAGGCACAATAAACACATTCTCCTCATTAGGATAAATGATATTGAT
*
102410 GATTTTCTTTTGCATAGAAATCTTTTCTTTGCCCTATTTTTCTGAAAATAAAAGTTCATCCCTTG
196 GATTTTCTTTTGCATAGAAATCTTTTCTTTGCCCTATTTTCCTGAAAATAAAAGTTCATCCCTTG
* *
102475 AATAAGACAAGCATCGATTCTCATAATAGTCTCCATTATTTTAAAGATT-GAGAA-CCAAAACAC
261 AATAAGACAAGCATCGATTCTCATAATAGTCTCCATTCTTTTCAAGATTAG-GAAGCCAAAACAC
* *
102538 ATACCCTTCATTAGGATACATGACATTGAAGCTTTGGTGTCACGAGAAAAGCTTTTCTTTTCACC
325 ATACCCTTCATTAGGATACATGACATTGAA-CTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACC
* ** * * * *
102603 ATTTTTGATAGAATCAAAGTTTATCTTTTAAATAA-ATGAACAAGACTAGGCATGCTTATCCCCT
389 ATTTTTGATAGAATCAAAGTTTATCTCTTAAATAAGACAAACAAGAATAGTCATACTAATCCCCT
*
102667 TTTTTTTCAAGATTAGGCACCA
454 TTCTTTTCAAGATTAGGCACCA
** * * * *
102689 TAAATGTAGTCTTCTTATTAGGATACACGATATTGATGCTTTGGTTTCGCTAGAAAGGTTTTCTT
1 TAAACATAGTCTTCTCATTAGGATACACAATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTT
* *
102754 CCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAA
66 CCCTCCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAA
102801 CAAGCATCGA
Statistics
Matches: 1316, Mismatches: 197, Indels: 53
0.84 0.13 0.03
Matches are distributed among these distances:
473 3 0.00
474 180 0.14
475 348 0.26
476 195 0.15
477 534 0.41
478 53 0.04
479 3 0.00
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (475 bp):
TAAACATAGTCTTCTCATTAGGATACACAATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTT
CCCTCCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATAGATTCTAGTAATGA
TCTTCATTCATTTTGTGATTAGGCACAATAAACACATTCTCCTCATTAGGATAAATGATATTGAT
GATTTTCTTTTGCATAGAAATCTTTTCTTTGCCCTATTTTCCTGAAAATAAAAGTTCATCCCTTG
AATAAGACAAGCATCGATTCTCATAATAGTCTCCATTCTTTTCAAGATTAGGAAGCCAAAACACA
TACCCTTCATTAGGATACATGACATTGAACTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCAT
TTTTGATAGAATCAAAGTTTATCTCTTAAATAAGACAAACAAGAATAGTCATACTAATCCCCTTT
CTTTTCAAGATTAGGCACCA
Found at i:102622 original size:158 final size:157
Alignment explanation
Indices: 101984--103419 Score: 426
Period size: 159 Copynumber: 9.0 Consensus size: 157
101974 CCTGAAAATA
* * * * *
101984 AAAGTTCATCCCTTGAATAAGATAAGCATTGACTCTCATAATAGTCTCCATTCTTTTCAAGATT-
1 AAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCATAATA-TCTCCATTTTTTTAAAGATTG
* * * * **
102048 AGGAAGCCAAAACACATTCCCTTCATTTGGATACTTGACATTGACACTTTGGTGTCGCAAGAAAA
65 A-GAA-CCAAAACACATACCCTTCATTAGGATACATGATATTGATGCTTTGGTGTCGCAAGAAAA
***
102113 GCTTTTCTTTTTGCCATTTTTGATAGAATC
128 GCTTTTCTTTCCACCATTTTTGATAGAATC
* * ** * * * * * * **
102143 AGAGTTTATCTTTTAAATAAGATAA--ATAAGACTAGGTGTGC-T-A-ATCTCCGTTCTTTCCAA
1 AAAGTTCATCCCTTGAATAAGACAAGCAT-CGA-T---TCT-CATAATATCTCCATTTTTTTAAA
* * * * ** * * *
102203 GATTTG-GCACCATAA-ACATAGTCTTCTCATTAGGATACACAATATTGATGCTTCGGTTTCACA
60 GA-TTGAGAACCAAAACACATA-CCCT-TCATTAGGATACATGATATTGATGCTTTGGTGTCGCA
* * *
102266 AGAAAGGC-TTTCTTCCCACCAATTTTTG-TAAAATC
122 AGAAAAGCTTTTCTTTCCACC-ATTTTTGATAGAATC
* ** * * * ** * * **
102301 TAAGTTTGTGCC-TCAATTGAGACAAATATAGATTCT-AGTAATGATCTTCATTTATTTT-GTG-
1 AAAGTTCATCCCTTGAA-TAAGACAAGCATCGATTCTCA-TAAT-ATCTCCATTT-TTTTAAAGA
* * * * * * * ** * *
102362 TTTAGGCACAACAAACACATTCTCC-TCTTTAGGATAAATGATATTGATGATTTTCTTTTGCATA
62 TTGA-GAACCA-AAACACATAC-CCTTCATTAGGATACATGATATTGATGCTTTGGTGTCGCA-A
* * *
102426 G-AAATCTTTTCTTTGCC-CTATTTTTCTGA-A-AATA
123 GAAAAGCTTTTCTTT-CCACCA-TTTT-TGATAGAATC
*
102460 AAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCATAATAGTCTCCATTATTTTAAAGATTG
1 AAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCATAATA-TCTCCATTTTTTTAAAGATTG
* * * *
102525 AGAACCAAAACACATACCCTTCATTAGGATACATGACATTGAAGCTTTGGTGTCACGAGAAAAGC
65 AGAACCAAAACACATACCCTTCATTAGGATACATGATATTGATGCTTTGGTGTCGCAAGAAAAGC
*
102590 TTTTCTTTTCACCATTTTTGATAGAATC
130 TTTTCTTTCCACCATTTTTGATAGAATC
* ** * * ** * * *
102618 AAAGTTTATCTTTTAAATAAATGAACAAG-A-CTAGGCATGC-T--TATCCCCTTTTTTTTCAAG
1 AAAGTTCATCCCTTGAAT-AA-G-ACAAGCATCGATTC-T-CATAATATCTCCATTTTTTTAAAG
* * ** ** * * *
102678 ATT-AGGCACCATAA-ATGTAGTCTTCTTATTAGGATACACGATATTGATGCTTTGGTTTCGCTA
61 ATTGA-GAACCAAAACACATACCCTTC--ATTAGGATACATGATATTGATGCTTTGGTGTCGCAA
* *
102741 G-AAAGGTTTTCTTCCCACCAATTTTTG-TA-AAGTC
123 GAAAAGCTTTTCTTTCCACC-ATTTTTGATAGAA-TC
* * * *
102775 TAAGTTCATGCCTCAAATGAGACAA-ACAAGCATCGATTCTCATAACAATCTCCATTCTTTTTAA
1 AAAGTTCAT-CC-C--TTGA-ATAAGACAAGCATCGATTCTCATAA-TATCTCCATT-TTTTTAA
* * *
102839 A-ATTGGGAAGCCAAAACACATACCCTTCATTAAGATACATGATATTGATGCTTTGGTGTCGTAA
59 AGATTGAGAA-CCAAAACACATACCCTTCATTAGGATACATGATATTGATGCTTTGGTGTCGCAA
* * *
102903 GAAAAGCATTTCCTTCCACCATTTTTGATAGAATG
123 GAAAAGCTTTTCTTTCCACCATTTTTGATAGAATC
* * * * * * ** * ** * *
102938 AAAGTTTAACTCTTAAATAAGATAAACAT-GAATAGTCA-AATGAATCCCCATTCCTTTCAGGAT
1 AAAGTTCATCCCTTGAATAAGACAAGCATCG-ATTCTCATAAT--ATCTCCATTTTTTTAAAGAT
* * * ** * * * * *
103001 T-ACGTACCAGAA-ATATAGTCTTCCCATTAGGATACATAATATTGATGCTTTGGTTTTGTAGGA
63 TGA-GAACCAAAACACATACCCTT--CATTAGGATACATGATATTGATGCTTTGGTGTCGCAAGA
* * *
103064 AAGGC-TTTCTTCCCTCCAATTTTTG-TA-AAGTC
125 AAAGCTTTTCTTTCCACC-ATTTTTGATAGAA-TC
* * ** * * * ** ** *
103096 TAAGTTCATGCCTCAAATGAGACAAACAT-GCAATCTTGTAATGATCTATATTCATTTTT-TA-A
1 AAAGTTCATCCCTTGAATAAGACAAGCATCG-ATTCTCATAAT-ATCTCCATT--TTTTTAAAGA
* * * * * * * * ** * * *
103158 TT-AGGCACAATAAACACATTCCCTTCCTTAAGATAAATGACATTGATGATTTTCTTTTGCATTG
62 TTGA-GAACCA-AAACACATACCCTTCATTAGGATACATGATATTGATGCTTTGGTGTCGCA-AG
* * * *
103222 -AAATCTTTTCTTTGCC-CAATTTTT-TTAAAAATC
124 AAAAGCTTTTCTTT-CCACCATTTTTGAT-AGAATC
* * * * * * *
103255 AAAGTTCATCCCATAAATACA-ACAAGCATCGATTCTCGTAACAGTCTCCGTTATTTTCAAGATT
1 AAAGTTCATCCCTTGAATA-AGACAAGCATCGATTCTCATAATA-TCTCCATTTTTTTAAAGATT
* * ** * * *
103319 GGGAACCAAAAACACATACCCTTCATTAGGATACAAGACGTTGATGCTTTGGTGTCCCGACAAAA
64 GAGAACC-AAAACACATACCCTTCATTAGGATACATGATATTGATGCTTTGGTGTCGCAAGAAAA
* *
103384 GCTTTTCTTTCCACCGTTTTTGAGAGAATC
128 GCTTTTCTTTCCACCATTTTTGATAGAATC
*
103414 CAAGTT
1 AAAGTT
103420 TGTCACTTAA
Statistics
Matches: 904, Mismatches: 273, Indels: 200
0.66 0.20 0.15
Matches are distributed among these distances:
155 3 0.00
156 16 0.02
157 81 0.09
158 304 0.34
159 342 0.38
160 45 0.05
161 12 0.01
162 56 0.06
163 36 0.04
164 9 0.01
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.35
Consensus pattern (157 bp):
AAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCATAATATCTCCATTTTTTTAAAGATTGA
GAACCAAAACACATACCCTTCATTAGGATACATGATATTGATGCTTTGGTGTCGCAAGAAAAGCT
TTTCTTTCCACCATTTTTGATAGAATC
Found at i:102878 original size:320 final size:319
Alignment explanation
Indices: 102481--103123 Score: 880
Period size: 321 Copynumber: 2.0 Consensus size: 319
102471 CTTGAATAAG
* *
102481 ACAAGCATCGATTCTCATAATAGTCTCCATTATTTTAAAGATTGAGAACCAAAACACATACCCTT
1 ACAAGCATCGATTCTCATAACAATCTCCATTATTTTAAAGATTGAGAACCAAAACACATACCCTT
* * * * *
102546 CATTAGGATACATGACATTGAAGCTTTGGTGTCACGAGAAAAGCTTTTCTTTTCACCATTTTTGA
66 CATTAAGATACATGACATTGAAGCTTTGGTGTCACAAGAAAAGCATTTCCTTCCACCATTTTTGA
* * * * * * **
102611 TAGAATCAAAGTTTATCTTTTAAATAA-ATGAACAAGACTAGGC-ATGCTTATCCCCTTTTTTTT
131 TAGAATCAAAGTTTAACTCTTAAATAAGATAAACAAGAATAGGCAATG--AATCCCCATTCCTTT
* * * ** *
102674 CAAGATTAGGCACCATAAATGTAGTCTTCTTATTAGGATACACGATATTGATGCTTTGGTTTCGC
194 CAAGATTACGCACCAGAAATATAGTCTTCCCATTAGGATACACAATATTGATGCTTTGGTTTCG-
*
102739 TA-GAAAGGTTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAA
258 TAGGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAA
* *
102800 ACAAGCATCGATTCTCATAACAATCTCCATTCTTTTTAAA-ATTGGGAAGCCAAAACACATACCC
1 ACAAGCATCGATTCTCATAACAATCTCCATT-ATTTTAAAGATTGAGAA-CCAAAACACATACCC
* * **
102864 TTCATTAAGATACATGATATTGATGCTTTGGTGTCGTAAGAAAAGCATTTCCTTCCACCATTTTT
64 TTCATTAAGATACATGACATTGAAGCTTTGGTGTCACAAGAAAAGCATTTCCTTCCACCATTTTT
* * *
102929 GATAGAATGAAAGTTTAACTCTTAAATAAGATAAACATGAATAGTCAAATGAATCCCCATTCCTT
129 GATAGAATCAAAGTTTAACTCTTAAATAAGATAAACAAGAATAGGC-AATGAATCCCCATTCCTT
* * * *
102994 TCAGGATTACGTACCAGAAATATAGTCTTCCCATTAGGATACATAATATTGATGCTTTGGTTTTG
193 TCAAGATTACGCACCAGAAATATAGTCTTCCCATTAGGATACACAATATTGATGCTTTGGTTTCG
*
103059 TAGGAAAGGCTTTCTTCCCTCCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAA
258 TAGGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAA
103121 ACA
1 ACA
103124 TGCAATCTTG
Statistics
Matches: 282, Mismatches: 36, Indels: 10
0.86 0.11 0.03
Matches are distributed among these distances:
319 36 0.13
320 106 0.38
321 137 0.49
323 3 0.01
ACGTcount: A:0.33, C:0.19, G:0.14, T:0.34
Consensus pattern (319 bp):
ACAAGCATCGATTCTCATAACAATCTCCATTATTTTAAAGATTGAGAACCAAAACACATACCCTT
CATTAAGATACATGACATTGAAGCTTTGGTGTCACAAGAAAAGCATTTCCTTCCACCATTTTTGA
TAGAATCAAAGTTTAACTCTTAAATAAGATAAACAAGAATAGGCAATGAATCCCCATTCCTTTCA
AGATTACGCACCAGAAATATAGTCTTCCCATTAGGATACACAATATTGATGCTTTGGTTTCGTAG
GAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAA
Found at i:103175 original size:795 final size:796
Alignment explanation
Indices: 102007--103551 Score: 1990
Period size: 795 Copynumber: 1.9 Consensus size: 796
101997 TGAATAAGAT
* * * * *
102007 AAGCATTGACTCTCATAATAGTCTCCATTCTTTTCAAGATTAGGAAGCCAAAACACATTCCCTTC
1 AAGCATCGACTCTCATAACAATCTCCATTCTTTTCAAAATTAGGAAGCCAAAACACATACCCTTC
** * * * ***
102072 ATTTGGATACTTGACATTGACACTTTGGTGTCGCAAGAAAAGCTTTTCTTTTTGCCATTTTTGAT
66 ATTAAGATACATGACATTGACACTTTGGTGTCGCAAGAAAAGCATTTCCTTCCACCATTTTTGAT
* * * * * **** * *
102137 AGAATCAGAGTTTATCTTTTAAATAAGATAAATAAGACTAGGTGTGCTAATCTCCGTTCTTTCCA
131 AGAATCAAAGTTTAACTCTTAAATAAGATAAACAAGAATAGGTCAAATAATCCCCATTCTTTCCA
** * *
102202 AGATTTGGCACCATAAACATAGTCTTCTCATTAGGATACACAATATTGATGCTTCGGTTTCACAA
196 AGATTACGCACCAGAAACATAGTCTTCCCATTAGGATACACAATATTGATGCTTCGGTTTCACAA
** * *
102267 GAAAGGCTTTCTTCCCACCAATTTTTGTAAAATCTAAGTTTGTGCCTCAATTGAGACAAATATAG
261 GAAAGGCTTTCTTCCCACCAATTTTTGTAAAATCTAAGTTCATGCCTCAAATGAGACAAACATAG
* * ** * *
102332 ATTCTAGTAATGATCTTCATTTATTTTGTGTTTAGGCACAACAAACACATTCTCC-TCTTTAGGA
326 AATCTAGTAATGATCTTCATTCATTTTGTAATTAGGCACAACAAACACATTC-CCTTCCTTAAGA
* * *
102396 TAAATGATATTGATGATTTTCTTTTGCATAGAAATCTTTTCTTTGCCCTATTTTTCTGAAAATAA
390 TAAATGACATTGATGATTTTCTTTTGCATAGAAATCTTTTCTTTGCCCAATTTTTCTAAAAATAA
* * *
102461 AAGTTCATCCCTTGAATA-AGACAAGCATCGATTCTCATAATAGTCTCCATTATTTTAAAGATTG
455 AAGTTCATCCCATAAATACA-ACAAGCATCGATTCTCATAACAGTCTCCATTATTTTAAAGATTG
* *
102525 AGAACC-AAAACACATACCCTTCATTAGGATACATGACATTGAAGCTTTGGTGTCACGAGAAAAG
519 AGAACCAAAAACACATACCCTTCATTAGGATACAAGACATTGAAGCTTTGGTGTCACGACAAAAG
* * ** ** * *
102589 CTTTTCTTTTCACCATTTTTGATAGAATCAAAGTTTATCTTTTAAATAAATGA-ACAAGACTAGG
584 CTTTTCTTTCCACCATTTTTGAGAGAATCAAAGTTTATCACTTAAATAAAACAGACAAGAATACG
* * * * * *
102653 CATGCTTATCCCCTTTTTTTTCAAGATTAGGCACCATAAATGTAGTCTTCTTATTAGGATACACG
649 CATACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAATATAGTCTTCTCATTAGGATACACG
* ** * * *
102718 ATATTGATGCTTTGGTTTCGCTAGAAAGGTTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCA
714 ATATTAATGCACTAGTTTCGCAACAAAGG-TTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCA
102783 TGCCTCAAATGAGACAAAC
778 TGCCTCAAATGAGACAAAC
* * *
102802 AAGCATCGATTCTCATAACAATCTCCATTCTTTTTAAAATTGGGAAGCCAAAACACATACCCTTC
1 AAGCATCGACTCTCATAACAATCTCCATTCTTTTCAAAATTAGGAAGCCAAAACACATACCCTTC
* ** *
102867 ATTAAGATACATGATATTGATGCTTTGGTGTCGTAAGAAAAGCATTTCCTTCCACCATTTTTGAT
66 ATTAAGATACATGACATTGACACTTTGGTGTCGCAAGAAAAGCATTTCCTTCCACCATTTTTGAT
* *
102932 AGAATGAAAGTTTAACTCTTAAATAAGATAAACATGAATA-GTCAAATGAATCCCCATTCCTTT-
131 AGAATCAAAGTTTAACTCTTAAATAAGATAAACAAGAATAGGTCAAAT-AATCCCCATT-CTTTC
* * * * * ***
102995 CAGGATTACGTACCAGAAATATAGTCTTCCCATTAGGATACATAATATTGATGCTTTGGTTTTGT
194 CAAGATTACGCACCAGAAACATAGTCTTCCCATTAGGATACACAATATTGATGCTTCGGTTTCAC
* * *
103060 AGGAAAGGCTTTCTTCCCTCCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACAT
259 AAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAATCTAAGTTCATGCCTCAAATGAGACAAACAT
* * *
103125 -GCAATCTTGTAATGATCTAT-ATTCATTTTTTAATTAGGCACAATAAACACATTCCCTTCCTTA
324 AG-AATCTAGTAATGATCT-TCATTCATTTTGTAATTAGGCACAACAAACACATTCCCTTCCTTA
* *
103188 AGATAAATGACATTGATGATTTTCTTTTGCATTGAAATCTTTTCTTTGCCCAATTTTTTTAAAAA
387 AGATAAATGACATTGATGATTTTCTTTTGCATAGAAATCTTTTCTTTGCCCAATTTTTCTAAAAA
* * * *
103253 TCAAAGTTCATCCCATAAATACAACAAGCATCGATTCTCGTAACAGTCTCCGTTATTTTCAAGAT
452 TAAAAGTTCATCCCATAAATACAACAAGCATCGATTCTCATAACAGTCTCCATTATTTTAAAGAT
* * * *
103318 TGGGAACCAAAAACACATACCCTTCATTAGGATACAAGACGTTGATGCTTTGGTGTCCCGACAAA
517 TGAGAACCAAAAACACATACCCTTCATTAGGATACAAGACATTGAAGCTTTGGTGTCACGACAAA
* * * * *
103383 AGCTTTTCTTTCCACCGTTTTTGAGAGAATCCAAGTTTGTCACTTAAATAAAACAGTCATGAATA
582 AGCTTTTCTTTCCACCATTTTTGAGAGAATCAAAGTTTATCACTTAAATAAAACAGACAAGAATA
* * * *
103448 CTCATACTAATCCCCATTCTTTTCAGGTTTAGGCACCATAAATATAGTCTTCTCATTGGGATACA
647 CGCATACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAATATAGTCTTCTCATTAGGATACA
*
103513 TGATATTAATGCACTAGTTTCGCAACAAAGGTTTCTTCC
712 CGATATTAATGCACTAGTTTCGCAACAAAGGTTTCTTCC
103552 TGAAAGCTCA
Statistics
Matches: 633, Mismatches: 109, Indels: 15
0.84 0.14 0.02
Matches are distributed among these distances:
794 6 0.01
795 432 0.68
796 111 0.18
797 84 0.13
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.35
Consensus pattern (796 bp):
AAGCATCGACTCTCATAACAATCTCCATTCTTTTCAAAATTAGGAAGCCAAAACACATACCCTTC
ATTAAGATACATGACATTGACACTTTGGTGTCGCAAGAAAAGCATTTCCTTCCACCATTTTTGAT
AGAATCAAAGTTTAACTCTTAAATAAGATAAACAAGAATAGGTCAAATAATCCCCATTCTTTCCA
AGATTACGCACCAGAAACATAGTCTTCCCATTAGGATACACAATATTGATGCTTCGGTTTCACAA
GAAAGGCTTTCTTCCCACCAATTTTTGTAAAATCTAAGTTCATGCCTCAAATGAGACAAACATAG
AATCTAGTAATGATCTTCATTCATTTTGTAATTAGGCACAACAAACACATTCCCTTCCTTAAGAT
AAATGACATTGATGATTTTCTTTTGCATAGAAATCTTTTCTTTGCCCAATTTTTCTAAAAATAAA
AGTTCATCCCATAAATACAACAAGCATCGATTCTCATAACAGTCTCCATTATTTTAAAGATTGAG
AACCAAAAACACATACCCTTCATTAGGATACAAGACATTGAAGCTTTGGTGTCACGACAAAAGCT
TTTCTTTCCACCATTTTTGAGAGAATCAAAGTTTATCACTTAAATAAAACAGACAAGAATACGCA
TACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAATATAGTCTTCTCATTAGGATACACGAT
ATTAATGCACTAGTTTCGCAACAAAGGTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGC
CTCAAATGAGACAAAC
Found at i:104329 original size:19 final size:20
Alignment explanation
Indices: 104282--104334 Score: 65
Period size: 21 Copynumber: 2.6 Consensus size: 20
104272 TTACAAGCCA
104282 ATGTATCGATACAATTTGGTC
1 ATGTATCGATAC-ATTTGGTC
*
104303 AAGTATCGATACATCTT-GT-
1 ATGTATCGATACAT-TTGGTC
104322 ATGTATCGATACA
1 ATGTATCGATACA
104335 AACAGTTAAG
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
19 12 0.41
20 4 0.14
21 13 0.45
ACGTcount: A:0.32, C:0.15, G:0.17, T:0.36
Consensus pattern (20 bp):
ATGTATCGATACATTTGGTC
Found at i:104423 original size:20 final size:21
Alignment explanation
Indices: 104376--104428 Score: 65
Period size: 20 Copynumber: 2.6 Consensus size: 21
104366 GCCAATCACC
*
104376 TGTATCGATACATTCTTTGCA
1 TGTATCGATACATTCTGTGCA
*
104397 AGTATCGATACATT-TG-GTCA
1 TGTATCGATACATTCTGTG-CA
104417 TGTATCGATACA
1 TGTATCGATACA
104429 ATGTATCGAT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
19 1 0.04
20 14 0.50
21 13 0.46
ACGTcount: A:0.28, C:0.17, G:0.17, T:0.38
Consensus pattern (21 bp):
TGTATCGATACATTCTGTGCA
Found at i:104434 original size:13 final size:13
Alignment explanation
Indices: 104416--104440 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
104406 ACATTTGGTC
104416 ATGTATCGATACA
1 ATGTATCGATACA
104429 ATGTATCGATAC
1 ATGTATCGATAC
104441 TATGCATTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:110146 original size:15 final size:13
Alignment explanation
Indices: 110114--110139 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
110104 AATTTGGTCA
110114 TGTATCGATACAT
1 TGTATCGATACAT
110127 TGTATCGATACAT
1 TGTATCGATACAT
110140 CTTGTATATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:110250 original size:20 final size:21
Alignment explanation
Indices: 110199--110250 Score: 63
Period size: 20 Copynumber: 2.5 Consensus size: 21
110189 ACCAATCACC
110199 TGTATCAATACATTCTTTGCA
1 TGTATCAATACATTCTTTGCA
* *
110220 AGTATCGATACA-T-TTTGTCA
1 TGTATCAATACATTCTTTG-CA
110240 TGTATCAATAC
1 TGTATCAATAC
110251 TGTGCATTAT
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
19 4 0.15
20 12 0.46
21 10 0.38
ACGTcount: A:0.31, C:0.17, G:0.12, T:0.40
Consensus pattern (21 bp):
TGTATCAATACATTCTTTGCA
Found at i:112901 original size:474 final size:472
Alignment explanation
Indices: 110587--113442 Score: 2950
Period size: 475 Copynumber: 6.0 Consensus size: 472
110577 TTCTGACCAA
** * * * * * *
110587 TTTGTAAAGTCTAACTTCGTGCCTTAAATGAGCCAAACATAGATTATAGTAATGATCTTCAATCT
1 TTTGTAAAGTCTATGTTCGTACCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCT
* * * * * * *
110652 TTTTGTGATTAGGCACAATAAACACAATCTTCTAATTAGGATAAACGATATTGATGATTTTCCTT
66 TTTTGTGATTAGACACAATAAACAGATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTT
* * * *
110717 TGAATGGAAATATTTTCTTTGCCTTATTTTCTTTAAAATCAAAGTTCATCCCCTAAATAAGACAA
131 TGCATGGAAATCTTTTCTTTGCCTTATTTTC-TTAAAATCAAAGTTCAACCCTTAAA-AAGACAA
* * * * *
110782 GCAACGATTCTTGTAACAGTAT-TCATTTTTTTCTAGATTGGGAA-CCAAAA-ACAGGCACCCTT
194 GCATCGATTCTCGTAACAGT-TCT-ATTATTTTCAAGATTGGGAAGCCAAAACACA--TACCCTT
* * * * * *
110844 CATTA-GATACTTGACATGGATGCTTTGGTGTCGCGAGAAAAGCTTTTCTCTCCACCGTTTTTAA
255 CATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGA
* * * *
110908 TAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACATGAATACTTATACTAATCCTCATTCTTTTC
320 TAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTT
* *
110973 AAGATTAGGCACTATAAACATAGTCTTCTCATTAGGATACATGATATTGATGCTTTGGTTTCGCA
385 AAGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGATATTGATGCTTTGGTTTCACA
* * *
111038 GCAAAGGCTTTTTTCCCTCTAATT
450 ACAAAGGC-TTTTTCCCACCAATT
* * * * * * *
111062 TTTGTTAAGCCT-TAGTTCATGCCTTAAATGAGACAAACACGGATTCTAGTAATGATCTTTATTC
1 TTTGTAAAGTCTAT-GTTCGTACCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTC
** * * *
111126 TTTTTGTGATTA-AGCGTAATAAAC-GCATTTTTCTCATTATGATAAATGATATTGATGATTTTC
65 TTTTTGTGATTAGA-CACAATAAACAG-ATTCTCCTCATTAGGATAAATGATATTGATGATTTTC
* *
111189 TTTTGCATGGAAA-CTTTTCTTTGCCTTATTTTCCGTAAAATCAAAGTTCAACCTTTGAAAAAGA
128 TTTTGCATGGAAATCTTTTCTTTGCCTTATTTT-CTTAAAATCAAAGTTCAACCCTT-AAAAAGA
* * * * * *
111253 CAAGCATTGATTCTCATAACAGTCGCCATTATTTTCTAGATTGGGAAGCCAAAACACATTCCCTT
191 CAAGCATCGATTCTCGTAACAGT-TCTATTATTTTCAAGATTGGGAAGCCAAAACACATACCCTT
** * * * *
111318 CATTAGGATACATGTTATTGATGCTTTGGTGCCACAAGAAAAGCTTTTATTTCCATCATTTTTGA
255 CATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGA
* * *
111383 TAGAATAAAAGTTTGCCTCTTAAAT-AGTACAAACATGAATACTCACACTAA-CCCTCATT-TTT
320 TAGAATCAAAGTTTGTCTCTTAAATAAG-ACAAACATGAATACTCATACTAATCCC-CATTCTTT
* * * * *
111445 TTCAGAATTAGGCAGCATAAACATTA-TCTTCTCATTAGGGTACATGATATTGCTTCTTTGGTTT
383 TTAAG-ATTAGGCACCATAAACA-TAGTCTTCTCATTAGGATACATGATATTGATGCTTTGGTTT
* * * *
111509 CATAATAAAGGCTTTCTTCCCTCCAACT
446 CACAACAAAGGCTTT-TTCCCACCAATT
* * * * **
111537 TTTGTAAAGTCTTTGCTCGTTCCTCAAACGAGACAAACATACATTCTAGTAATGATCTTCATTC-
1 TTTGTAAAGTCTATGTTCGTACCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCT
* * * * * * * *
111601 ----ATGATTAGGCACAATAAACATATTCCCCTCCTAAGGATAAAAGACATTGATGATTTTCTTT
66 TTTTGTGATTAGACACAATAAACAGATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTT
* * * * * * *
111662 TGCATTGAAATTTTTTCTGTGCCCTATTTTCTTTAAAAT-AAAGTTTATA-CTTTAATTAAGACA
131 TGCATGGAAATCTTTTCTTTGCCTTATTTTC-TTAAAATCAAAGTTCA-ACCCTTAA-AAAGACA
* * * * * *
111725 AGTATCGATTCTTGTAATAGTCTCTATTCTTTTCCAGATTGGGAAGCCAAAACACATACCTTTCA
193 AGCATCGATTCTCGTAACAGT-TCTATTATTTTCAAGATTGGGAAGCCAAAACACATACCCTTCA
* * *
111790 TTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCATTTCTTTTCACTATTTTTGATA
257 TTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATA
* * * * * * * * *
111855 GAAACAAAGTTTGCCTCCTAAATAAGAC-AATATGAATAGTCATGCTAATCCCCATACATTTTAG
322 GAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTTAA
* * * *
111919 GATTAGGCACTATAAACATAGT-TTACTCATTAGGATACACGATATTGATGCTTTGGTTTTACAC
387 GATTAGGCACCATAAACATAGTCTT-CTCATTAGGATACATGATATTGATGCTTTGGTTTCACAA
*
111983 CAAAGGCTTTCTTCCCACCAACT
451 CAAAGGCTTT-TTCCCACCAATT
* * * *
112006 TTT-AAAAGTCTAAGTTCGTTCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCA
1 TTTGTAAAGTCTATGTTCGTACCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCT
* * ** * * * *
112070 TTTTGTGATAAGGCGTAATAAACTGATTTTCCTCATTACGATAAATGATATTGATGACTTTCTTT
66 TTTTGTGATTAGACACAATAAACAGATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTT
* * * * * *
112135 TGCAAGGAAA-CTTTTCTTTGCCTTATTTTTCTTAAGATCAAATTTAAACCCATGAAAAAGGCAA
131 TGCATGGAAATCTTTTCTTTGCCTTA-TTTTCTTAAAATCAAAGTTCAACCC-TTAAAAAGACAA
* * * ** * * *
112199 GCATCGATTCTCGTAACAGTCTCAATTCTTTCCAAGATCAGGAAGCTAAAACACAAACCCTTCAA
194 GCATCGATTCTCGTAACAGT-TCTATTATTTTCAAGATTGGGAAGCCAAAACACATACCCTTCAT
* * * *
112264 TAAGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAACATTTCTTTCCACCATTTTTGATAG
258 TAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAG
* * * * *
112329 AATCAAA-ATT-TCTCCTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCCTTTTAGG
323 AATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTTAAG
* * *
112392 ACTACGCACCATAAACATAGTCTTCTCATTAGGATACATGATATTGATGCTTTGGTTTCGCAACA
388 ATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGATATTGATGCTTTGGTTTCACAACA
112457 AAGGCATTTTTCCCACCAATT
453 AAGGC-TTTTTCCCACCAATT
* * * * * **
112478 TTTGCAAAGTCTATGTTTGCACCTCAAATGGGACAAAAATGGATTCTAGTAATGATCTTTGTTCT
1 TTTGTAAAGTCTATGTTCGTACCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCT
* * * * *
112543 TTTTGTGATTAGAAACTATAAACAGATTATCCTCATTAGGATAAATGATACTAATGATTTTCTTT
66 TTTTGTGATTAGACACAATAAACAGATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTT
* * *
112608 TGCATGGAAATCTTTTCTATACCTTATTTTCTTCAAAATCAAAGTTCATCCCTTAAATAAGACAA
131 TGCATGGAAATCTTTTCTTTGCCTTATTTTCTT-AAAATCAAAGTTCAACCCTTAAA-AAGACAA
* * *
112673 GCATCGATTCTCGTAACAG-TC-ATTATTTTCAAGATTAGGAA-CCAAGAAACACAAACCCTTTA
194 GCATCGATTCTCGTAACAGTTCTATTATTTTCAAGATTGGGAAGCC-A-AAACACATACCCTTCA
* * * * * * * * * *
112735 ATAGGATACATGACATTGATGCTGTAGTGTTGCGAGACAAGTTTTTCTTTTCACCGTTTATGATA
257 TTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATA
* * * *
112800 GAATCAAAGTTTGTCTCTTAAATAAGACAATCGTGAATACTCAAACTAATCCCCATTTTTTTTAA
322 GAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTTAA
* *
112865 GATTAGGCACCATAAACATAGTCTTCTTATTAGGATACACGATATTGATGCTTTGGTTTCACAAC
387 GATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGATATTGATGCTTTGGTTTCACAAC
*
112930 AATGG-TTTTCCTCCCACCAATT
452 AAAGGCTTTT--TCCCACCAATT
* * * * * * *
112952 TTTGTAAAGTCTATGTTCGTGCTTCAAATGAGTCAAACAAGGATTCTAGTAACGATCATCATTCA
1 TTTGTAAAGTCTATGTTCGTACCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCT
* * * *
113017 TTTTGTGATTAGGCACAATAAACACATTCTTCTCATTAGGATAAACGATATTGATGATTTTCTTT
66 TTTTGTGATTAGACACAATAAACAGATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTT
* * *
113082 TGCAT-GAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAAATTCAACCTTTGAAAAAGATAA
131 TGCATGGAAATCTTTTCTTTGCCTTATTTT-CTTAAAATCAAAGTTCAACCCTT-AAAAAGACAA
* * * * * **
113146 GCAACGATTCTCATAACAGTCTCTGTTATTTTCCAGATTGGGAAGCCAAAACACATTCCCTTTGT
194 GCATCGATTCTCGTAACAGT-TCTATTATTTTCAAGATTGGGAAGCCAAAACACATACCCTTCAT
* * * * * * * *
113211 TTGGATACAAGACCTTGATGCTTCGGGGTCACGAGAAAAGCTTTTCTTTCCATCGA-TTTTGATA
258 TAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCA-CCATTTTTGATA
* * * * * * * *
113275 GAATCAAACTTTGTCTTTTAAATAATACAAACATGAATACTTACACTAATCTCCATTCTTTTCAG
322 GAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTTAA
** * * * * * **
113340 GATTAGAAACCATAAACACATTCTTCTCATTA-GATAGAGGATATTGATGCTTTGGTTTCGCAGT
387 GATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGATATTGATGCTTTGGTTTCACAAC
* *
113404 AAAGGCTATTTTCCCTCTAATT
452 AAAGGCT-TTTTCCCACCAATT
*
113426 TTTGTAAAGCCTATGTT
1 TTTGTAAAGTCTATGTT
113443 TATCTCCTTA
Statistics
Matches: 1976, Mismatches: 348, Indels: 115
0.81 0.14 0.05
Matches are distributed among these distances:
468 57 0.03
469 93 0.05
470 214 0.11
471 57 0.03
472 209 0.11
473 385 0.19
474 449 0.23
475 482 0.24
476 28 0.01
477 2 0.00
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (472 bp):
TTTGTAAAGTCTATGTTCGTACCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCT
TTTTGTGATTAGACACAATAAACAGATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTT
TGCATGGAAATCTTTTCTTTGCCTTATTTTCTTAAAATCAAAGTTCAACCCTTAAAAAGACAAGC
ATCGATTCTCGTAACAGTTCTATTATTTTCAAGATTGGGAAGCCAAAACACATACCCTTCATTAG
GATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAAT
CAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTTAAGATT
AGGCACCATAAACATAGTCTTCTCATTAGGATACATGATATTGATGCTTTGGTTTCACAACAAAG
GCTTTTTCCCACCAATT
Found at i:116702 original size:472 final size:475
Alignment explanation
Indices: 115172--120785 Score: 6337
Period size: 473 Copynumber: 11.9 Consensus size: 475
115162 TCATAAGCAT
* * * ** * * * * * *
115172 AGGCTTTCTTCCTACAAATTTTTGTAAAGTTTAAATTCGTGCTTTAAATGAGTCAAATATGAATT
1 AGGCTTTCTTCCCACCAATTTTTGTAAAGTCTATGTTCGTACCTCAAATGAGACAAACATGGATT
* **
115237 CTAGTAATGATCTTCATTCATTTTGTGATTAGGCAGAATAAACACATTATCCTCATTAGGATAAA
66 CTAGTAATGATCTTCATTCTTTTTGTGATTAGGCACTATAAACACATTATCCTCATTAGGATAAA
* * *
115302 TGATATTGAT--TTTT-TTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATTAAAGT
131 TGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTTAAAATCAAAGT
* * *
115364 TC-TTCCATAAAT-AGACAAGCATCGATTCTCGTAACAGTCTCCATT-TTTTCAAGATTAGGAAC
196 TCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGT-TCCATTATTTTCAAGATTGGGAAC
* * * ** *
115426 CAGAAACACATACCCTTCATTAGGATACATAACATTGATGCTTTTGTGTCGTAAGAAAAGCATTT
260 CAAAAACACATACCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCGAGAAAAGCTTTT
* * *
115491 ATTTCCACCGTTTTTGATAGAATCAAAG-TT-TCTCTTAAATAAGACAAACATGAATAGTCATAC
325 CTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCAAAC
** *
115554 TAATCCCCATTCCTTTT-AGGATTATTCACTATAAACATAGTCTTCTCATTAGGATACACGATAT
390 TAATCCCCATT-CTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATAT
* * *
115618 TAATGCTTTGGTTTTGAAACAA
454 TGATGCTTTGGTTTCGCAACAA
* * * *
115640 AGGCTTTCTTCCCACCAATTTTTGTAAAGTCTATGTCCGTCCCTCCAATGAGACAAAAATGGATT
1 AGGCTTTCTTCCCACCAATTTTTGTAAAGTCTATGTTCGTACCTCAAATGAGACAAACATGGATT
* * * *
115705 CTAGTAGTGATCTTCATTCTTTTTGTGATTAGGTACTACAAACATATTATCCTCA-T----T--A
66 CTAGTAATGATCTTCATTCTTTTTGTGATTAGGCACTATAAACACATTATCCTCATTAGGATAAA
115763 -G-----GATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCC-TATTTTCTTTAAAATCAAAGT
131 TGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTTAAAATCAAAGT
* * * **
115821 TCATCCCTGAAATAAGATAAGCATCGATT-TCCATATTAG-T-CATTATTTTCAAGATTGGGAAC
196 TCATCCCTTAAATAAGACAAGCATCGATTCT-CGTAACAGTTCCATTATTTTCAAGATTGGGAAC
* * * ***
115883 CCAAAACACATACCCTTCAATAGGATACATGACATTGATACTTCAATGTCGCGAGAAAAGCTTTT
260 CAAAAACACATACCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCGAGAAAAGCTTTT
* * * *
115948 TTTTCCACCGTTTATGATAGAATCAAAGTTTGTCTCTTAAATAAGACAATCATGAATAATCAAAC
325 CTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCAAAC
* ** * ** *
116013 TAATCCTCGCTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTGTTTAGGGTACACGATATT
390 TAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATT
* *
116078 GATACTTCGGTTTCGCAACAA
455 GATGCTTTGGTTTCGCAACAA
* * * * *
116099 AGGCTTTCTTCCCACCAATTTTTGTAAAGTCCATGTTTGTACCTCAAATAAGATAAAAATGGATT
1 AGGCTTTCTTCCCACCAATTTTTGTAAAGTCTATGTTCGTACCTCAAATGAGACAAACATGGATT
* * ** *
116164 CTAGTAATGATCTTCGTTCTTTTTGTGATTAGGCACTATAAACACAATATTGTCATTAGAATAAA
66 CTAGTAATGATCTTCATTCTTTTTGTGATTAGGCACTATAAACACATTATCCTCATTAGGATAAA
* * * * * *
116229 TGATACTT-ATGATTTTCTATTACCTGGAAATATTTTCTTTACCTTATTTTTTTTAAAATCAAAG
131 TGATA-TTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTTAAAATCAAAG
* *
116293 TTCATCCCTTAAATAAGACAAGCATCGATTTTCGTAATAG-T-CATTATTTTCAAGATTGGGAAC
195 TTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTTCCATTATTTTCAAGATTGGGAAC
* * *
116356 CAAAAACACATATCCTCCAATAGGATACATGACATTGATGCTTTGGTGTCGCGAGAAAAGCTTTT
260 CAAAAACACATACCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCGAGAAAAGCTTTT
* * * *
116421 CTTTCTACCGTCTATGATAGAATCAAAGTTTGTCTCTTAAATAAGACAATCATGAATA-TCAAAC
325 CTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCAAAC
* * * *
116485 TAATCCCCATT-TTTTACAGGATTAGGCACCAAAAACGTAGTCTTCTTATTAGGATACATGATAT
390 TAATCCCCATTCTTTT-CAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATAT
* *
116549 TGATGCTTTAGTTTTGCAACAA
454 TGATGCTTTGGTTTCGCAACAA
* * * * *
116571 AGGTTTTTTTCCCACTAATTTTTGTAAAGTCTATGTTCGTACATTAAATGAGACAAACATGGATT
1 AGGCTTTCTTCCCACCAATTTTTGTAAAGTCTATGTTCGTACCTCAAATGAGACAAACATGGATT
* *
116636 CTAGTAATGATCTTCGTTCATTTTGTGATTAGGCACTATAAACACATTATCCTCATTAGGATAAA
66 CTAGTAATGATCTTCATTCTTTTTGTGATTAGGCACTATAAACACATTATCCTCATTAGGATAAA
* * *
116701 TGATACTT-ATGATTTTCTTTTGCAAGGAAATCTTTTCTTCGCTTTATTTTCTTTAAAATCAAAG
131 TGATA-TTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTTAAAATCAAAG
*
116765 TTCATCCCTTAAATAAGACAGGCATCGATTCTCGTAACAGTT--ATTATTTTCAAGATTGGGAAC
195 TTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTTCCATTATTTTCAAGATTGGGAAC
* * * *
116828 CAAAAACGCATA-CCTCTCAATAGGATACATGACATTGATGCTTCGGTGTCGCAAGAAAAGCTTT
260 CAAAAACACATACCCT-TCATTAGGATACATGACATTGATGCTTTGGTGTCGCGAGAAAAGCTTT
* * * ** * * *
116892 TCTTTCCATCGTTTATGATAGAATCAAAGCTTCACTCTTAAATAAGGCAATCATGAATACTTAAA
324 TCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCAAA
*** * *
116957 CTAATTTTCATTCTTTCCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGGTACACGATAT
389 CTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATAT
* *
117022 TGATGTTTTGGTTTTGCAACAA
454 TGATGCTTTGGTTTCGCAACAA
* * *
117044 AGGCTTTCTTCCCACCAATTTTTGTAAAGTCCATGTTCGTACCTCAAATGAGACAAAAATAGATT
1 AGGCTTTCTTCCCACCAATTTTTGTAAAGTCTATGTTCGTACCTCAAATGAGACAAACATGGATT
* * * *
117109 CTAGTAATGATCTTCGTTCTTTTTGTGATTCA-GCACTACAAATACATTATCCTTATTAGGATAA
66 CTAGTAATGATCTTCATTCTTTTTGTGATT-AGGCACTATAAACACATTATCCTCATTAGGATAA
117173 ATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTTAAAATCAAAG
130 ATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTTAAAATCAAAG
* *
117238 TTCATCCGTTAAATAAGACAAGCATCGATTCTCGTAACA-AT-CATTATTTTCAAGATTGGGAAC
195 TTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTTCCATTATTTTCAAGATTGGGAAC
* * * *
117301 CAAAAACACAAACCCTTCAATAGGATACATGACATTGATGCTTTGGTGTCGCGAGAAAAACTGTT
260 CAAAAACACATACCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCGAGAAAAGCTTTT
* *
117366 CTTTCCACCGTTTATGATAGAATCAAAGTTTGTCTCTTAAATAAGACAATCATGAATACTCAAAC
325 CTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCAAAC
* ** * *
117431 TAATCCCTATTCTTTTTTGGACTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGGTATT
390 TAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATT
**
117496 GATGCTTTGGTTTCTTAACAA
455 GATGCTTTGGTTTCGCAACAA
* * ** * *
117517 AGGTTTTCTTCCCACCAATTTCTACAAAGTCAATGTAT-GTACCTCAAATGAGACAAACATTGAT
1 AGGCTTTCTTCCCACCAATTTTTGTAAAGTCTATGT-TCGTACCTCAAATGAGACAAACATGGAT
* * * *
117581 TCTAGTAATGATCTTCACTCTTTTTGTGATTAGGCACTACACACACATTATCCTTATTAGGATAA
65 TCTAGTAATGATCTTCATTCTTTTTGTGATTAGGCACTATAAACACATTATCCTCATTAGGATAA
* * **
117646 ATGATATTGACGATTTTCTTTTGCATTGAAATCTTTTCTTTGCGATATTTTCTTTAAAATCAAAG
130 ATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTTAAAATCAAAG
* * * * * * *
117711 TTCAACCCTTAAATAAGACTAAGCATCAATTCTTGTAACAG-T-CATTATTTTGAAGATTTGCAT
195 TTCATCCCTTAAATAAGAC-AAGCATCGATTCTCGTAACAGTTCCATTATTTTCAAGATTGGGAA
* * * *
117774 CTAAAAACACATACCCTTCATTAGGATACATGACATTGATGCTTCGGTGTCACGAGAAAAGTTTT
259 CCAAAAACACATACCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCGAGAAAAGCTTT
*** *
117839 TCTTTCCATAATTTTTTATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCAAA
324 TCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCAAA
* * * * * *
117904 CTAATCCCCATTCTTTTTAGGATTTGGCACCATAAACACATTCTGCTCATTAGGATACAGGATAT
389 CTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATAT
*
117969 TGATGCTTTGGTTTCACAACAA
454 TGATGCTTTGGTTTCGCAACAA
* * * * * * * * *
117991 TGGTTTTGTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCTTCAAATCAGTCCAACATGGATT
1 AGGCTTTCTTCCCACCAATTTTTGTAAAGTCTATGTTCGTACCTCAAATGAGACAAACATGGATT
* * * *
118056 CTAGTAATGATCTTCATTCATTTTGTGATTAGGCACAATAAACACATTCTCCTCTTTAGGATAAA
66 CTAGTAATGATCTTCATTCTTTTTGTGATTAGGCACTATAAACACATTATCCTCATTAGGATAAA
* *
118121 CGATATTGATGATTTTCTTTT-CATGGAAA--TTTTCTTTGCCTTATTTTCCTTAAAATCAAAGT
131 TGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTTAAAATCAAAGT
* * * * * * * * * *
118183 TCAACCTTTGAAA-AAGATAAGCATCGATTCTCATAATAGTCTCGACTATTTTCCAGATTAGAAA
196 TCATCCCTT-AAATAAGACAAGCATCGATTCTCGTAACAGT-TCCATTATTTTCAAGATTGGGAA
** ** * * ** *
118247 GCC-AAAACACATTTCCTTTGTTAGGATGCAAGACATTGATGCTTCAGTGTCACGAGAAAAGCTT
259 -CCAAAAACACATACCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCGAGAAAAGCTT
* * * * * *
118311 TTCTTTCCTCCATTTTTGATAGAATCCAAGTTTGTCTTTTAAATAAGACAAACATGAATACTTAC
323 TTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCAA
** *
118376 ACT-A-CCCCTATTCTTTTCAGGATTAGGCACCATAAACATAGTCTAGTCATTAGGATACATGAT
388 ACTAATCCCC-ATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGAT
* ** *
118439 ATTGATGCTTTAGTTTCATAGCAA
452 ATTGATGCTTTGGTTTCGCAACAA
* * * * * *
118463 AGGCTTTCTTCCCACCAATATCTGTAAAGTCTAAGTTCGTGCCTCAAATAAGACAAACTTGGATT
1 AGGCTTTCTTCCCACCAATTTTTGTAAAGTCTATGTTCGTACCTCAAATGAGACAAACATGGATT
* * * * * * * * *
118528 CTTGTAATGATCTTCATTCGTTTTGTGATGAGGCGCAACAAACATATTCTCCTCATTACGATAAA
66 CTAGTAATGATCTTCATTCTTTTTGTGATTAGGCACTATAAACACATTATCCTCATTAGGATAAA
* ** * *
118593 CGATATTGATGATTTTCTTTACCATGGAAA-CTTTTCTTTGCCTTATTTTCGTTAAAATAAAAGT
131 TGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTTAAAATCAAAGT
* * * * * * *
118657 TTAACCCTTAAAAAAGACAAGCGTTGATTCTTGGAACAGTCTCCATTATTTTCAAGATTGGGAAG
196 TCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGT-TCCATTATTTTCAAGATTGGGAA-
* ** * *
118722 CC-AAAACATATACCCTTCATTAAAATACATGACATTGATGCTTCGGTGTCACGAGAAAAGCTTT
259 CCAAAAACACATACCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCGAGAAAAGC-TT
* * * * * *
118786 TTTTTTCCATCGCTTTTGATAGAATCTAAGTTTGTCTCTTAAATATGACAATCATGAATACTCAA
323 TTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCAA
* * * * * *
118851 ACTAATCCCCATTCTTTTCAAGACTAGGCACCATAAACACA-TGATTCTCTTTAGGATAGACGAT
388 ACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGT-CTTCTCATTAGGATACACGAT
* **
118915 ATCGATGCTTTGGTTTCATAACAA
452 ATTGATGCTTTGGTTTCGCAACAA
* * * * *
118939 AGGCTTTCTTTCCACGC-ATTTTTATAAAGTCTAT-TTCGTACCTCAAATAAGATAAACTTGGAT
1 AGGCTTTCTTCCCAC-CAATTTTTGTAAAGTCTATGTTCGTACCTCAAATGAGACAAACATGGAT
* * * * * *
119002 TTTAGTAATGATCTTCATTCGTTTTGT-AATATGGCA-TAATAAACACATTCTCCTCTTTACGAT
65 TCTAGTAATGATCTTCATTCTTTTTGTGATTA-GGCACT-ATAAACACATTATCCTCATTAGGAT
** * *
119065 AAACAATATTGATGATTTTCTTTTGCATGGAAA-CTTTTCTTTGCCTTTTTTTTTCCTTAAAATC
128 AAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCC--TTATTTTCTTTAAAATC
* * * * * * * * * *
119129 AAAGTTTAACCCTTGAATAAGGCAGGCAACGATTCTCATAATAGTCTCCATTCTTTACAAGATTG
191 AAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGT-TCCATTATTTTCAAGATTG
* * *
119194 GGAAGCC-AAAACACATACCTTTTACA-AAGG-TACATGACATTGATGCTTTGGTGTTGC-AGGA
255 GGAA-CCAAAAACACATACC-CTT-CATTAGGATACATGACATTGATGCTTTGGTGTCGCGA-GA
* * * *
119255 AAAGCATTTCTTTCCACTGTTTTTGATAGAATCAATG-TT-TCTCTTAAATAAGACAAACAAGAA
316 AAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAA
* * * ** *
119318 TAGTCATACTAATCCCCATTCCTTTCAGGATTACACACCATAAACATAGTCTTCTCATCAGGATA
381 TACTCAAACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATA
*
119383 CACGATATTGATGCTTTGGTTTCACAACAA
446 CACGATATTGATGCTTTGGTTTCGCAACAA
* * * *
119413 AGGCTTTCTTCCCACCCATTTTTGTAAGGTCTATGTTTGTACCTCAAATAAGACAAACATGGATT
1 AGGCTTTCTTCCCACCAATTTTTGTAAAGTCTATGTTCGTACCTCAAATGAGACAAACATGGATT
* * *
119478 CTAGTAATGATCTTCATTCTTTTTGTGATTAGGCACCATAAATACATTCTCCTCATTAGGATAAA
66 CTAGTAATGATCTTCATTCTTTTTGTGATTAGGCACTATAAACACATTATCCTCATTAGGATAAA
* * * * *
119543 TGATATTAATGATTTTCTTTTGCTTTGAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAATGT
131 TGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTTAAAATCAAAGT
** * * ** **
119608 TCATCTGTAAAACAAGACAAGCAAAGATTCTCAAAACAGTCTCCATT-TATTTCAAGATTGGGAA
196 TCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGT-TCCATTAT-TTTCAAGATTGGGAA
* * * * ** * *
119672 GCC-ACAACACATA-CCTTTATTAAGATACATCACATTGATGCTTTGGTGTTACTAGAAAAGCAT
259 -CCAAAAACACATACCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCGAGAAAAGCTT
* ** * * * * * *
119735 TTCCTTCTGCCATTTTTGATAGAATGAAAGTTTGTCTCTTAAATAAGATAAACATTAATAGTCAT
323 TTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCAA
* * * * * **
119800 ACTAATCCCTATTCTTTCCAAGATCATGG-ACCATAAACATAGTCTTCGCATTAGGATATGCGAT
388 ACTAATCCCCATTCTTTTCAGGATTA-GGCACCATAAACATAGTCTTCTCATTAGGATACACGAT
* **
119864 ACTGATGCACTGGTTTCGCAACAA
452 ATTGATGCTTTGGTTTCGCAACAA
** * ** * * *
119888 AGG-TTTCTTCTAACCATTTTTTG-AGAAGTCTAACTTCGTGCCTCAAATGAGCCAAACAGGGAT
1 AGGCTTTCTTCCCACCAATTTTTGTA-AAGTCTATGTTCGTACCTCAAATGAGACAAACATGGAT
* ** ** * *
119951 TCTAGTAATGATCTTCATTCTTTTTGTGATTATGCAGAATAAATGCATTCTCCTAATTAGGATAA
65 TCTAGTAATGATCTTCATTCTTTTTGTGATTAGGCACTATAAACACATTATCCTCATTAGGATAA
* * * * * * *
120016 ATGATATTGAT-AATTT-TTTTGCACGAAAATCATTT-TTTGCCCTATTTTCCTTAAAATGAAAG
130 ATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTTAAAATCAAAG
* * * *
120078 TACATCGCC-TAAATAAGATAAGCATCGATTCTCGTAACAGTTTCCATTCTTTTCAAGACTGGGA
195 TTCATC-CCTTAAATAAGACAAGCATCGATTCTCGTAACAG-TTCCATTATTTTCAAGATTGGGA
* *
120142 ACCAGAAACACATACCCTTCATTAGGATACATGACATTGATGCTTTGGTGTTGCGAGAAAAGCTT
258 ACCAAAAACACATACCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCGAGAAAAGCTT
* * * * *
120207 TTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAATTAAGGCAAACATGAATACTTAC
323 TTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCAA
* * *
120272 ACTAATCCCTATTCTTTTCAGGATTATGCACCATAAACATAGTCTTCTCGTTAGGATACACGATA
388 ACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATA
120337 TTGATGCTTTGGTTTCGCAACAA
453 TTGATGCTTTGGTTTCGCAACAA
* * * *
120360 AGGCTTTCTTCCCTCCAATTTTTGTAAAG-C-ATGAGTTCGTGCCTCAAATGGGACAAA-GTCGG
1 AGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAT--GTTCGTACCTCAAATGAGACAAACAT-GG
* * * * * * * * *
120422 ATTCTGGTAATGATTTTCGTTATTTTTGTGATTAGGCGCAATAAACACATTCTCCTCACTACGAT
63 ATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGGCACTATAAACACATTATCCTCATTAGGAT
* * * * * *
120487 AGAGGATATT-ATTGATTTTCTTTTGAATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCA
128 AAATGATATTGA-TGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTTAAAATCA
* * * *
120551 AAGTTCATCCCTTAGATAAGACAAGCATTGATTCTGGTAACAATTTCCAGTT-TTTTCAAGATTG
192 AAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAAC-AGTTCCA-TTATTTTCAAGATTG
* * * * * *
120615 GGAAGCCAAAAA-ACATTCCCTTCCTTAGGATTCATGAAATTGATGCTTTGG-GATCGCAACAAA
255 GGAA-CCAAAAACACATACCCTTCATTAGGATACATGACATTGATGCTTTGGTG-TCGCGAGAAA
* ** *
120678 AACTTTTCTTTCCTTCGTTTTTGATAGAATAAAAGTTTGTCTCTTAAATAAGACAAACATGAATA
318 AGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATA
* * * *
120743 CTCATACCAATCCCCATTCATTTCAGGATTTGGCACCATAAAC
383 CTCAAACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAAC
120786 TTTTCTTTTG
Statistics
Matches: 4407, Mismatches: 644, Indels: 182
0.84 0.12 0.03
Matches are distributed among these distances:
455 3 0.00
456 4 0.00
457 122 0.03
458 41 0.01
459 220 0.05
460 2 0.00
461 1 0.00
463 1 0.00
464 1 0.00
466 1 0.00
467 2 0.00
468 100 0.02
470 19 0.00
471 137 0.03
472 846 0.19
473 1190 0.27
474 829 0.19
475 409 0.09
476 345 0.08
477 129 0.03
478 3 0.00
479 2 0.00
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.36
Consensus pattern (475 bp):
AGGCTTTCTTCCCACCAATTTTTGTAAAGTCTATGTTCGTACCTCAAATGAGACAAACATGGATT
CTAGTAATGATCTTCATTCTTTTTGTGATTAGGCACTATAAACACATTATCCTCATTAGGATAAA
TGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTTAAAATCAAAGT
TCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTTCCATTATTTTCAAGATTGGGAACC
AAAAACACATACCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCGAGAAAAGCTTTTC
TTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCAAACT
AATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTG
ATGCTTTGGTTTCGCAACAA
Found at i:118128 original size:947 final size:949
Alignment explanation
Indices: 115172--120785 Score: 6375
Period size: 947 Copynumber: 5.9 Consensus size: 949
115162 TCATAAGCAT
* * * * * * * * *
115172 AGGCTTTCTTCCTACAAATTTTTGTAAAGTTTAAATTCGTGCTTTAAATGAGTCAAATATGAATT
1 AGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTACCTCAAATGAGTCAAACATGGATT
* *
115237 CTAGTAATGATCTTCATTCATTTTGTGATTAGGCAGAATAAACACATTATCCTCATTAGGATAAA
66 CTAGTAATGATCTTCATTCTTTTTGTGATTAGGCACAATAAACACATTATCCTCATTAGGATAAA
* *
115302 TGATATTGAT--TTTT-TTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATTAAAGT
131 TGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGT
* * *
115364 TC-TTCCATAAAT-AGACAAGCATCGATTCTCGTAACAGTCTCCATT-TTTTCAAGATTAGGAAC
196 TCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAG-CTCCATTATTTTCAAGATTGGGAAC
* * * * ** *
115426 CAGAAACACATACCCTTCATTAGGATACATAACATTGATGCTTTTGTGTCGTAAGAAAAGCATTT
260 CAAAAACACATACCCTTCAATAGGATACATGACATTGATGCTTTGGTGTCGCGAGAAAAGCTTTT
* * *
115491 ATTTCCACCGTTTTTGATAGAATCAAAG-TT-TCTCTTAAATAAGACAAACATGAATAGTCATAC
325 CTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCAAAC
** *
115554 TAATCCCCATTCCTTTT-AGGATTATTCACTATAAACATAGTCTTCTCATTAGGATACACGATAT
390 TAATCCCCATT-CTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATAT
* * * *
115618 TAATGCTTTGGTTT-TGAAACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTATGTCCGTCC
454 TGATGCTTTGGTTTCT-CAACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTATGTTCGTAC
* * * *
115682 CTCCAATGAGACAAAAATGGATTCTAGTAGTGATCTTCATTCTTTTTGTGATTAGGTACTACAAA
518 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGGCACTACAAA
*
115747 CATATTATCCTCATTA-G------G-----ATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCC
583 CACATTATCCTCATTAGGATAAATGATATTATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCC
* * * **
115800 -TATTTTCTTTAAAATCAAAGTTCATCCCTGAAATAAGATAAGCATCGATT-TCCATATTAGT-C
648 TTATTTTCTTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCT-CGTAACAGTCC
* * *
115862 ATTATTTTCAAGATTGGGAA-CCCAAAACACATACCCTTCAATAGGATACATGACATTGATACTT
712 ATTATTTTCAAGATTGGGAAGCCAAAAACACATACCCTTCATTAGGATACATGACATTGATGCTT
** * * * *
115926 CAATGTCGCGAGAAAAGCTTTTTTTTCCACCGTTTATGATAGAATCAAAGTTTGTCTCTTAAATA
777 CGGTGTCACGAGAAAAGCTTTTCTTTCCATCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATA
* * * ** *
115991 AGACAATCATGAATAATCAAACTAATCCTCGCTCTTTTTAGGATTAGGCACCATAAACATAGTCT
842 AGACAAACATGAATACTCAAACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCT
** * * *
116056 TCTGTTTAGGGTACACGATATTGATACTTCGGTTTCGCAACAA
907 TCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAA
* * * * *
116099 AGGCTTTCTTCCCACCAATTTTTGTAAAGTCCATGTTTGTACCTCAAATAAGAT-AAAAATGGAT
1 AGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTACCTCAAATGAG-TCAAACATGGAT
* * * ** *
116163 TCTAGTAATGATCTTCGTTCTTTTTGTGATTAGGCACTATAAACACAATATTGTCATTAGAATAA
65 TCTAGTAATGATCTTCATTCTTTTTGTGATTAGGCACAATAAACACATTATCCTCATTAGGATAA
* * * * * **
116228 ATGATACTT-ATGATTTTCTATTACCTGGAAATATTTTCTTTACCTTATTTTTTTTAAAATCAAA
130 ATGATA-TTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAA
* *
116292 GTTCATCCCTTAAATAAGACAAGCATCGATTTTCGTAATAG-T-CATTATTTTCAAGATTGGGAA
194 GTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGCTCCATTATTTTCAAGATTGGGAA
* *
116355 CCAAAAACACATATCCTCCAATAGGATACATGACATTGATGCTTTGGTGTCGCGAGAAAAGCTTT
259 CCAAAAACACATACCCTTCAATAGGATACATGACATTGATGCTTTGGTGTCGCGAGAAAAGCTTT
* * * *
116420 TCTTTCTACCGTCTATGATAGAATCAAAGTTTGTCTCTTAAATAAGACAATCATGAATA-TCAAA
324 TCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCAAA
* * * *
116484 CTAATCCCCATT-TTTTACAGGATTAGGCACCAAAAACGTAGTCTTCTTATTAGGATACATGATA
389 CTAATCCCCATTCTTTT-CAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATA
* * * *
116548 TTGATGCTTTAGTTT-TGCAACAAAGGTTTTTTTCCCACTAATTTTTGTAAAGTCTATGTTCGTA
453 TTGATGCTTTGGTTTCT-CAACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTATGTTCGTA
* * * * *
116612 CATTAAATGAGACAAACATGGATTCTAGTAATGATCTTCGTTCATTTTGTGATTAGGCACTATAA
517 CCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGGCACTACAA
* *
116677 ACACATTATCCTCATTAGGATAAATGATACTTATGATTTTCTTTTGCAAGGAAATCTTTTCTTCG
582 ACACATTATCCTCATTAGGATAAATGATA-TTATGATTTTCTTTTGCATGGAAATCTTTTCTTTG
* *
116742 CTTTATTTTCTTTAAAATCAAAGTTCATCCCTTAAATAAGACAGGCATCGATTCTCGTAACAGT-
646 CCTTATTTTCTTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTC
* * *
116806 TATTATTTTCAAGATTGGGAA-CCAAAAACGCATA-CCTCTCAATAGGATACATGACATTGATGC
711 CATTATTTTCAAGATTGGGAAGCCAAAAACACATACCCT-TCATTAGGATACATGACATTGATGC
* * * * **
116869 TTCGGTGTCGCAAGAAAAGCTTTTCTTTCCATCGTTTATGATAGAATCAAAGCTTCACTCTTAAA
775 TTCGGTGTCACGAGAAAAGCTTTTCTTTCCATCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAA
* * * *** *
116934 TAAGGCAATCATGAATACTTAAACTAATTTTCATTCTTTCCAGGATTAGGCACCATAAACATAGT
840 TAAGACAAACATGAATACTCAAACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGT
* * *
116999 CTTCTCATTAGGGTACACGATATTGATGTTTTGGTTTTGCAACAA
905 CTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAA
* * * * *
117044 AGGCTTTCTTCCCACCAATTTTTGTAAAGTCCATGTTCGTACCTCAAATGAGACAAAAATAGATT
1 AGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTACCTCAAATGAGTCAAACATGGATT
* * * * *
117109 CTAGTAATGATCTTCGTTCTTTTTGTGATTCA-GCACTACAAATACATTATCCTTATTAGGATAA
66 CTAGTAATGATCTTCATTCTTTTTGTGATT-AGGCACAATAAACACATTATCCTCATTAGGATAA
*
117173 ATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTTAAAATCAAAG
130 ATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAAG
* *
117238 TTCATCCGTTAAATAAGACAAGCATCGATTCTCGTAACA-AT-CATTATTTTCAAGATTGGGAAC
195 TTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGCTCCATTATTTTCAAGATTGGGAAC
* * *
117301 CAAAAACACAAACCCTTCAATAGGATACATGACATTGATGCTTTGGTGTCGCGAGAAAAACTGTT
260 CAAAAACACATACCCTTCAATAGGATACATGACATTGATGCTTTGGTGTCGCGAGAAAAGCTTTT
* *
117366 CTTTCCACCGTTTATGATAGAATCAAAGTTTGTCTCTTAAATAAGACAATCATGAATACTCAAAC
325 CTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCAAAC
* ** * *
117431 TAATCCCTATTCTTTTTTGGACTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGGTATT
390 TAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATT
* * * ** *
117496 GATGCTTTGGTTTCTTAACAAAGGTTTTCTTCCCACCAATTTCTACAAAGTCAATGTAT-GTACC
455 GATGCTTTGGTTTCTCAACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTATGT-TCGTACC
* * *
117560 TCAAATGAGACAAACATTGATTCTAGTAATGATCTTCACTCTTTTTGTGATTAGGCACTACACAC
519 TCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGGCACTACAAAC
* * * *
117625 ACATTATCCTTATTAGGATAAATGATATTGACGATTTTCTTTTGCATTGAAATCTTTTCTTTGCG
584 ACATTATCCTCATTAGGATAAATGATATT-ATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCC
* * * *
117690 ATATTTTCTTTAAAATCAAAGTTCAACCCTTAAATAAGACTAAGCATCAATTCTTGTAACAGT-C
648 TTATTTTCTTTAAAATCAAAGTTCATCCCTTAAATAAGAC-AAGCATCGATTCTCGTAACAGTCC
* * * * *
117754 ATTATTTTGAAGATT-TGCATCTAAAAACACATACCCTTCATTAGGATACATGACATTGATGCTT
712 ATTATTTTCAAGATTGGGAAGCCAAAAACACATACCCTTCATTAGGATACATGACATTGATGCTT
* ** *
117818 CGGTGTCACGAGAAAAGTTTTTCTTTCCATAATTTTTTATAGAATCAAAGTTTGTCTCTTAAATA
777 CGGTGTCACGAGAAAAGCTTTTCTTTCCATCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATA
* * * *
117883 AGACAAACATGAATACTCAAACTAATCCCCATTCTTTTTAGGATTTGGCACCATAAACACATTCT
842 AGACAAACATGAATACTCAAACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCT
* * *
117948 GCTCATTAGGATACAGGATATTGATGCTTTGGTTTCACAACAA
907 TCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAA
* * * * * * *
117991 TGGTTTTGTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCTTCAAATCAGTCCAACATGGATT
1 AGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTACCTCAAATGAGTCAAACATGGATT
* * *
118056 CTAGTAATGATCTTCATTCATTTTGTGATTAGGCACAATAAACACATTCTCCTCTTTAGGATAAA
66 CTAGTAATGATCTTCATTCTTTTTGTGATTAGGCACAATAAACACATTATCCTCATTAGGATAAA
*
118121 CGATATTGATGATTTTCTTTT-CATGGAAA--TTTTCTTTGCCTTATTTTCCTTAAAATCAAAGT
131 TGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGT
* * * * * * * * * *
118183 TCAACCTTTGAAA-AAGATAAGCATCGATTCTCATAATAGTCTCGACTATTTTCCAGATTAGAAA
196 TCATCCCTT-AAATAAGACAAGCATCGATTCTCGTAACAG-CTCCATTATTTTCAAGATTGGGAA
** *** * * ** *
118247 GCC-AAAACACATTTCCTTTGTTAGGATGCAAGACATTGATGCTTCAGTGTCACGAGAAAAGCTT
259 -CCAAAAACACATACCCTTCAATAGGATACATGACATTGATGCTTTGGTGTCGCGAGAAAAGCTT
* * * * * *
118311 TTCTTTCCTCCATTTTTGATAGAATCCAAGTTTGTCTTTTAAATAAGACAAACATGAATACTTAC
323 TTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCAA
** *
118376 ACT-A-CCCCTATTCTTTTCAGGATTAGGCACCATAAACATAGTCTAGTCATTAGGATACATGAT
388 ACTAATCCCC-ATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGAT
* * * * *
118439 ATTGATGCTTTAGTTTCAT-AGCAAAGGCTTTCTTCCCACCAATATCTGTAAAGTCTAAGTTCGT
452 ATTGATGCTTTGGTTTC-TCAACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTATGTTCGT
* * * * * * * *
118503 GCCTCAAATAAGACAAACTTGGATTCTTGTAATGATCTTCATTCGTTTTGTGATGAGGCGCAACA
516 ACCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGGCACTACA
* * * * **
118568 AACATATTCTCCTCATTACGATAAACGATATTGATGATTTTCTTTACCATGGAAA-CTTTTCTTT
581 AACACATTATCCTCATTAGGATAAATGATATT-ATGATTTTCTTTTGCATGGAAATCTTTTCTTT
* * * * * * * * *
118632 GCCTTATTTTCGTTAAAATAAAAGTTTAACCCTTAAAAAAGACAAGCGTTGATTCTTGGAACAGT
645 GCCTTATTTTCTTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAG-
* **
118697 CTCCATTATTTTCAAGATTGGGAAGCC-AAAACATATACCCTTCATTAAAATACATGACATTGAT
709 -TCCATTATTTTCAAGATTGGGAAGCCAAAAACACATACCCTTCATTAGGATACATGACATTGAT
* * *
118761 GCTTCGGTGTCACGAGAAAAGCTTTTTTTTTCCATCGCTTTTGATAGAATCTAAGTTTGTCTCTT
773 GCTTCGGTGTCACGAGAAAAGC-TTTTCTTTCCATCGTTTTTGATAGAATCAAAGTTTGTCTCTT
* * * * *
118826 AAATATGACAATCATGAATACTCAAACTAATCCCCATTCTTTTCAAGACTAGGCACCATAAACAC
837 AAATAAGACAAACATGAATACTCAAACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACAT
* * * * **
118891 A-TGATTCTCTTTAGGATAGACGATATCGATGCTTTGGTTTCATAACAA
902 AGT-CTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAA
* * * * *
118939 AGGCTTTCTTTCCACGC-ATTTTTATAAAGTCT-ATTTCGTACCTCAAATAAGAT-AAACTTGGA
1 AGGCTTTCTTCCCAC-CAATTTTTGTAAAGTCTAAGTTCGTACCTCAAATGAG-TCAAACATGGA
* * * * * * *
119001 TTTTAGTAATGATCTTCATTCGTTTTGT-AATATGGCATAATAAACACATTCTCCTCTTTACGAT
64 TTCTAGTAATGATCTTCATTCTTTTTGTGATTA-GGCACAATAAACACATTATCCTCATTAGGAT
** *
119065 AAACAATATTGATGATTTTCTTTTGCATGGAAA-CTTTTCTTTGCCTTTTTTTTTCCTTAAAATC
128 AAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCC--TTATTTTCCTTAAAATC
* * * * * * * * * *
119129 AAAGTTTAACCCTTGAATAAGGCAGGCAACGATTCTCATAATAGTCTCCATTCTTTACAAGATTG
191 AAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAG-CTCCATTATTTTCAAGATTG
* *
119194 GGAAGCC-AAAACACATACCTTTTACAA-AGG-TACATGACATTGATGCTTTGGTGTTGC-AGGA
255 GGAA-CCAAAAACACATACC-CTT-CAATAGGATACATGACATTGATGCTTTGGTGTCGCGA-GA
* * * *
119255 AAAGCATTTCTTTCCACTGTTTTTGATAGAATCAATG-TT-TCTCTTAAATAAGACAAACAAGAA
316 AAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAA
* * * ** *
119318 TAGTCATACTAATCCCCATTCCTTTCAGGATTACACACCATAAACATAGTCTTCTCATCAGGATA
381 TACTCAAACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATA
* * *
119383 CACGATATTGATGCTTTGGTTTCACAACAAAGGCTTTCTTCCCACCCATTTTTGTAAGGTCTATG
446 CACGATATTGATGCTTTGGTTTCTCAACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTATG
* *
119448 TTTGTACCTCAAATAAGACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGGCA
511 TTCGTACCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGGCA
* * * * * *
119513 CCATAAATACATTCTCCTCATTAGGATAAATGATATTAATGATTTTCTTTTGCTTTGAAATCTTT
576 CTACAAACACATTATCCTCATTAGGATAAATGATATT-ATGATTTTCTTTTGCATGGAAATCTTT
* * ** * * ** **
119578 TCTTTGCCTTATTTTCCTTAAAATCAATGTTCATCTGTAAAACAAGACAAGCAAAGATTCTCAAA
640 TCTTTGCCTTATTTTCTTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTA
* * * *
119643 ACAGTCTCCATT-TATTTCAAGATTGGGAAGCC-ACAACACATA-CCTTTATTAAGATACATCAC
705 ACAG--TCCATTAT-TTTCAAGATTGGGAAGCCAAAAACACATACCCTTCATTAGGATACATGAC
* * * * * *** * *
119705 ATTGATGCTTTGGTGTTACTAGAAAAGCATTTCCTTCTGCCATTTTTGATAGAATGAAAGTTTGT
767 ATTGATGCTTCGGTGTCACGAGAAAAGCTTTTCTTTCCATCGTTTTTGATAGAATCAAAGTTTGT
* * * * * * * *
119770 CTCTTAAATAAGATAAACATTAATAGTCATACTAATCCCTATTCTTTCCAAGATCATGG-ACCAT
832 CTCTTAAATAAGACAAACATGAATACTCAAACTAATCCCCATTCTTTTCAGGATTA-GGCACCAT
* ** * **
119834 AAACATAGTCTTCGCATTAGGATATGCGATACTGATGCACTGGTTTCGCAACAA
896 AAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAA
** * * * * *
119888 AGG-TTTCTTCTAACCATTTTTTG-AGAAGTCTAACTTCGTGCCTCAAATGAGCCAAACAGGGAT
1 AGGCTTTCTTCCCACCAATTTTTGTA-AAGTCTAAGTTCGTACCTCAAATGAGTCAAACATGGAT
* * ** * *
119951 TCTAGTAATGATCTTCATTCTTTTTGTGATTATGCAGAATAAATGCATTCTCCTAATTAGGATAA
65 TCTAGTAATGATCTTCATTCTTTTTGTGATTAGGCACAATAAACACATTATCCTCATTAGGATAA
* * * * * *
120016 ATGATATTGAT-AATTT-TTTTGCACGAAAATCATTT-TTTGCCCTATTTTCCTTAAAATGAAAG
130 ATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAAG
* * * * *
120078 TACATCGCC-TAAATAAGATAAGCATCGATTCTCGTAACAGTTTCCATTCTTTTCAAGACTGGGA
195 TTCATC-CCTTAAATAAGACAAGCATCGATTCTCGTAACAG-CTCCATTATTTTCAAGATTGGGA
* * *
120142 ACCAGAAACACATACCCTTCATTAGGATACATGACATTGATGCTTTGGTGTTGCGAGAAAAGCTT
258 ACCAAAAACACATACCCTTCAATAGGATACATGACATTGATGCTTTGGTGTCGCGAGAAAAGCTT
* * * * *
120207 TTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAATTAAGGCAAACATGAATACTTAC
323 TTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCAA
* * *
120272 ACTAATCCCTATTCTTTTCAGGATTATGCACCATAAACATAGTCTTCTCGTTAGGATACACGATA
388 ACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATA
* *
120337 TTGATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCTCCAATTTTTGTAAAG-C-ATGAGTTCGT
453 TTGATGCTTTGGTTTCTCAACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAT--GTTCGT
* * * * * * * * * *
120400 GCCTCAAATGGGACAAA-GTCGGATTCTGGTAATGATTTTCGTTATTTTTGTGATTAGGCGCAAT
516 ACCTCAAATGAGACAAACAT-GGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGGCACTAC
* * * * * * *
120464 AAACACATTCTCCTCACTACGATAGAGGATATTATTGATTTTCTTTTGAATGAAAATCTTTTCTT
580 AAACACATTATCCTCATTAGGATAAATGATATTA-TGATTTTCTTTTGCATGGAAATCTTTTCTT
* * * * *
120529 TGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAGATAAGACAAGCATTGATTCTGGTAACAA
644 TGCCTTATTTTCTTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAAC-A
* * * * *
120594 TTTCCAGTT-TTTTCAAGATTGGGAAGCCAAAAA-ACATTCCCTTCCTTAGGATTCATGAAATTG
708 -GTCCA-TTATTTTCAAGATTGGGAAGCCAAAAACACATACCCTTCATTAGGATACATGACATTG
* * * * * * *
120657 ATGCTTTGG-GATCGCAACAAAAACTTTTCTTTCCTTCGTTTTTGATAGAATAAAAGTTTGTCTC
771 ATGCTTCGGTG-TCACGAGAAAAGCTTTTCTTTCCATCGTTTTTGATAGAATCAAAGTTTGTCTC
* * * *
120721 TTAAATAAGACAAACATGAATACTCATACCAATCCCCATTCATTTCAGGATTTGGCACCATAAAC
835 TTAAATAAGACAAACATGAATACTCAAACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAAC
120786 TTTTCTTTTG
Statistics
Matches: 3982, Mismatches: 608, Indels: 173
0.84 0.13 0.04
Matches are distributed among these distances:
927 114 0.03
928 3 0.00
929 12 0.00
930 138 0.03
931 193 0.05
932 49 0.01
938 1 0.00
943 2 0.00
944 122 0.03
945 803 0.20
946 486 0.12
947 988 0.25
948 330 0.08
949 246 0.06
950 259 0.07
951 231 0.06
952 5 0.00
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.36
Consensus pattern (949 bp):
AGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTACCTCAAATGAGTCAAACATGGATT
CTAGTAATGATCTTCATTCTTTTTGTGATTAGGCACAATAAACACATTATCCTCATTAGGATAAA
TGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGT
TCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGCTCCATTATTTTCAAGATTGGGAACC
AAAAACACATACCCTTCAATAGGATACATGACATTGATGCTTTGGTGTCGCGAGAAAAGCTTTTC
TTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCAAACT
AATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTG
ATGCTTTGGTTTCTCAACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTATGTTCGTACCTC
AAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGGCACTACAAACAC
ATTATCCTCATTAGGATAAATGATATTATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTA
TTTTCTTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCCATTA
TTTTCAAGATTGGGAAGCCAAAAACACATACCCTTCATTAGGATACATGACATTGATGCTTCGGT
GTCACGAGAAAAGCTTTTCTTTCCATCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAC
AAACATGAATACTCAAACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTC
ATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAA
Found at i:121012 original size:284 final size:284
Alignment explanation
Indices: 120502--121056 Score: 735
Period size: 284 Copynumber: 2.0 Consensus size: 284
120492 ATATTATTGA
* *
120502 TTTTCTTTTGAATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAGA
1 TTTTCTTTTGAATGAAAATCTTTTCTATGCCCTATTTTCCTTAAAATCAAAGTTCATACCTTAGA
* * * *
120567 TAAGACAAGCATTGATTCTGGTAACAATTTCCAGTTTTTTCAAGATTGGGAAGCCAAAAAACATT
66 TAAGACAAGCATCGATTCTCGTAACAATCTCCAGTTTTTTCAAGATTGGGAAGCCAAAAAACATA
* * * *
120632 CCCTTCCTTAGGATTCATGAAATTGATGCTTTGGGATCGCAACAAAAACTTTTCTTTCCTTCGTT
131 CCCTTCATTAGGATACATGAAATTGATGCTGTGGGATCGCAACAAAAACATTTCTTTCCTTCGTT
* * * *
120697 TTTGATAGAATAAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACCAATCCCCATTC
196 TCTGATAGAAAAAAAGTTTGCCTCTTAAATAAGACAAACATGAATACTCATACCAATCCCCATAC
120762 ATTTCAGGATTTGGCACCATAAAC
261 ATTTCAGGATTTGGCACCATAAAC
* * * * *
120786 TTTTCTTTTGCATCG-AAATTTTTTCTATGCCCTATTTTCTTTAAAATCAAAGTTTATACTTTA-
1 TTTTCTTTTGAAT-GAAAATCTTTTCTATGCCCTATTTTCCTTAAAATCAAAGTTCATACCTTAG
* * *
120849 ATTAAGACAAGCATCGATTCTCGTAACAGTCTCCA-TTCTTTTTAAGATTGGGAAGCCAAAACAC
65 A-TAAGACAAGCATCGATTCTCGTAACAATCTCCAGTT-TTTTCAAGATTGGGAAGCCAAAAAAC
* ** *
120913 ATACCCTTCATTAGGATACATGACATTGATGCTGTGGTG-TCGCATGAAAAGCATTTCTTTTCAC
128 ATACCCTTCATTAGGATACATGAAATTGATGCTGTGG-GATCGCAACAAAAACATTTC-TTTC-C
* **
120977 -T-GTTTCTGATAGAAAAAAAGTTTGCCTCTTAAATAAGACAAACATGAATAGTCATATTAATCC
190 TTCGTTTCTGATAGAAAAAAAGTTTGCCTCTTAAATAAGACAAACATGAATACTCATACCAATCC
* *
121040 CTATACATTTTAGGATT
255 CCATACATTTCAGGATT
121057 AGACGTTATA
Statistics
Matches: 234, Mismatches: 31, Indels: 12
0.84 0.11 0.04
Matches are distributed among these distances:
283 3 0.01
284 223 0.95
285 7 0.03
286 1 0.00
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.37
Consensus pattern (284 bp):
TTTTCTTTTGAATGAAAATCTTTTCTATGCCCTATTTTCCTTAAAATCAAAGTTCATACCTTAGA
TAAGACAAGCATCGATTCTCGTAACAATCTCCAGTTTTTTCAAGATTGGGAAGCCAAAAAACATA
CCCTTCATTAGGATACATGAAATTGATGCTGTGGGATCGCAACAAAAACATTTCTTTCCTTCGTT
TCTGATAGAAAAAAAGTTTGCCTCTTAAATAAGACAAACATGAATACTCATACCAATCCCCATAC
ATTTCAGGATTTGGCACCATAAAC
Found at i:122087 original size:473 final size:473
Alignment explanation
Indices: 120786--122147 Score: 1577
Period size: 473 Copynumber: 2.9 Consensus size: 473
120776 CACCATAAAC
* * * * * *
120786 TTTTCTTTTGCATCGAAATTTTTTCTATGCCCTATTTTCTTTAAAATCAAAGTTTATACTTTAAT
1 TTTTCTTTTGCATCGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTTATCCCTTAAA
*
120851 TAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTTAAGATTGGGAAGCCAAAACACATA
66 TAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATA
* * * * *
120916 CCCTTCATTAGGATACATGACATTGATGCTGTGGTGTCGCATGAAAAGCATTTCTTTTCACTGTT
131 CCCTTCATTAAGATACATGACATTGATGCTTTGGTGTTGCAAGAAAAGCATTTCTTTCCACTGTT
* * * * *
120981 TCTGATAGAAAAAAAGTTTGCCTCTTAAATAAGACAAACATGAATAGTCATATTAATCCCTATAC
196 TTTGATAGAATAAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAAT-CCTATTC
* * *
121046 ATTTTAGGATTAG-ACGTTATAAACATAGTCTACTCTTTAGGATACACGATATTGATGCTTTGGT
260 ATTTTAGGATTAGCAC--CATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGT
* * *
121110 TTC-GCAGCAAAGGCTTTCTTCTCACCAATTTTTGAAAAGTCTAAATTCGTGCCTCAAATGAGAC
323 TTCAGCAACAAAGGCTTTCTTC-CACC-ATTTTTGAAAAGTCTAAATTCGTACCTCAAATAAGAC
* * *
121174 AAACATAGATTCTAGTAATGATCTTCATTCATTTTATGATAAGGCGCAATAAACTCATTCTTCTC
386 AAACATAGATTCTAGTAATGATCTTCATTCATTTTATGATAAGGCACAATAAACACATTCTCCTC
* *
121239 ATTATGGTAAACGTTGTTGATGA
451 ATTATGGTAAACGATATTGATGA
** * * * * *
121262 TTTTCTTTTGCAAGGAAA-CTTTTCTTTACCTTATTTTTCTTAAAATCAAAGTTTAACTCTTGAA
1 TTTTCTTTTGCATCGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTTATCCCTT-AA
* * * * *
121326 A-AAGACAAGCATCGATTCTCGTAACAGTCTCTATTCTTTCCAAGATTGAGAGGCCAAAATACAT
65 ATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACAT
* ** *
121390 ACCCTTCATTAAGATACAAGACATTGATGCTTTGGTGTTATAAGAAAAGCATTTCTTTCCTCTGT
130 ACCCTTCATTAAGATACATGACATTGATGCTTTGGTGTTGCAAGAAAAGCATTTCTTTCCACTGT
* *
121455 TTTTAATAGAATCAAAA--TT-TCTCTTAAATAAGACAAACATGAATAGTCATACTAATACCCAT
195 TTTTGATAGAAT-AAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAAT-CCTAT
* * * * *
121517 TCCTTTTAGGTTTACGCGCCATAAACATAGTCTTCTCATTAAGATACACGACATTGATGCTTTGG
258 TCATTTTAGGATTA-GCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGG
* *** * *
121582 TTT-AGCAACAAAGGCTTTCTTTCCACCCATTTTTGTAAAGTCTCTGTTCTTACCTCAAATAAGG
322 TTTCAGCAACAAAGGCTTTC-TTCCA-CCATTTTTGAAAAGTCTAAATTCGTACCTCAAATAAGA
* * * * * *
121646 CAAACATGGATTCTCGTAATGATCTTCATTCTTTTTGTGATTAGGCACTATAAACACATTCTCCT
385 CAAACATAGATTCTAGTAATGATCTTCATTCATTTTATGATAAGGCACAATAAACACATTCTCCT
*
121711 CATTA-GGATAAATGATATTGATGA
450 CATTATGG-TAAACGATATTGATGA
* * * **
121735 TTTT-TTTTTCTTCGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAATGTTCGTCCCTTAAA
1 TTTTCTTTTGCATCGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTTATCCCTTAAA
* * *
121799 TAAGACAAGCAACGATTCTCATAACAGTCTCCATT-TATTTCAAGATTGGGAAGCCAAACCACAT
66 TAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCT-TTTCAAGATTGGGAAGCCAAAACACAT
* ** **
121863 ACCCTTTATTAAGATATGTGACATTGATGCTTTGGTGTTGCAAGAAAAGCATTTCTTTCCACCAT
130 ACCCTTCATTAAGATACATGACATTGATGCTTTGGTGTTGCAAGAAAAGCATTTCTTTCCACTGT
* * *
121928 TTTTGATAGAATGAAAGTTTGTCTCTTAAATAAGATAAACATGAAAAGTCATACTAATCCTTATT
195 TTTTGATAGAATAAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCC-TATT
* * ** ** ** *
121993 CTTTTTAGGATTATGCACCATAAACATAGTCTTCTCATTAGGGTATGCGATACAGATGCACTGAT
259 CATTTTAGGATTA-GCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGT
* ** * * *
122058 TTCAG-AACAAAGG-TTTCTTCCGGCCATTTTTTG-TGAGTCTAACTTCGTGCCTCAAATGA-AC
323 TTCAGCAACAAAGGCTTTCTTCC-ACCA-TTTTTGAAAAGTCTAAATTCGTACCTCAAATAAGAC
*
122119 CAA-ATAGGAATTCTAGTAATGATCTTCAT
386 AAACATA-G-ATTCTAGTAATGATCTTCAT
122148 GATTTGATTT
Statistics
Matches: 740, Mismatches: 126, Indels: 43
0.81 0.14 0.05
Matches are distributed among these distances:
471 2 0.00
472 22 0.03
473 415 0.56
474 22 0.03
475 255 0.34
476 24 0.03
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (473 bp):
TTTTCTTTTGCATCGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTTATCCCTTAAA
TAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATA
CCCTTCATTAAGATACATGACATTGATGCTTTGGTGTTGCAAGAAAAGCATTTCTTTCCACTGTT
TTTGATAGAATAAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCTATTCA
TTTTAGGATTAGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTC
AGCAACAAAGGCTTTCTTCCACCATTTTTGAAAAGTCTAAATTCGTACCTCAAATAAGACAAACA
TAGATTCTAGTAATGATCTTCATTCATTTTATGATAAGGCACAATAAACACATTCTCCTCATTAT
GGTAAACGATATTGATGA
Found at i:122200 original size:22 final size:22
Alignment explanation
Indices: 122151--122200 Score: 52
Period size: 21 Copynumber: 2.3 Consensus size: 22
122141 TCTTCATGAT
*
122151 TTGATTTGATTCTTTCTATGTC
1 TTGATTTGATTCTTTCTATGGC
122173 TT-ATTTG-TTCATTT-TCATGGC
1 TTGATTTGATTC-TTTCT-ATGGC
122194 TTGATTT
1 TTGATTT
122201 ACTCTGCTTG
Statistics
Matches: 24, Mismatches: 1, Indels: 6
0.77 0.03 0.19
Matches are distributed among these distances:
20 4 0.17
21 14 0.58
22 6 0.25
ACGTcount: A:0.14, C:0.12, G:0.14, T:0.60
Consensus pattern (22 bp):
TTGATTTGATTCTTTCTATGGC
Found at i:135330 original size:31 final size:31
Alignment explanation
Indices: 135261--135330 Score: 77
Period size: 31 Copynumber: 2.3 Consensus size: 31
135251 TGGACAGCTG
* * *
135261 GAGGTTACCGTTGGAGCTGCTAGAGCTGCTG
1 GAGGTTGCCGTTGAAGCTGCTAGAGCTGCTA
* * * *
135292 GAAGTTGCCGTTGAAGCTGCTGGTGTTGCTA
1 GAGGTTGCCGTTGAAGCTGCTAGAGCTGCTA
135323 GAGGTTGC
1 GAGGTTGC
135331 GATGGTTGCT
Statistics
Matches: 31, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.16, C:0.17, G:0.39, T:0.29
Consensus pattern (31 bp):
GAGGTTGCCGTTGAAGCTGCTAGAGCTGCTA
Found at i:135520 original size:22 final size:22
Alignment explanation
Indices: 135493--135549 Score: 105
Period size: 22 Copynumber: 2.6 Consensus size: 22
135483 ATTGCTTTTT
135493 CTTTTACGTTGCTCGTGCTTTC
1 CTTTTACGTTGCTCGTGCTTTC
135515 CTTTTACGTTGCTCGTGCTTTC
1 CTTTTACGTTGCTCGTGCTTTC
*
135537 CTTTTACATTGCT
1 CTTTTACGTTGCT
135550 GCTGTTTGGT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 34 1.00
ACGTcount: A:0.07, C:0.26, G:0.16, T:0.51
Consensus pattern (22 bp):
CTTTTACGTTGCTCGTGCTTTC
Found at i:136264 original size:19 final size:19
Alignment explanation
Indices: 136222--136264 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
136212 TTTCCATATG
136222 AATGC-ATGAAATGAAAGC
1 AATGCAATGAAATGAAAGC
* *
136240 AGTGCAATGAAATGAATGC
1 AATGCAATGAAATGAAAGC
136259 AATGCA
1 AATGCA
136265 TCAAATGTTT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
18 4 0.19
19 17 0.81
ACGTcount: A:0.47, C:0.12, G:0.23, T:0.19
Consensus pattern (19 bp):
AATGCAATGAAATGAAAGC
Found at i:137718 original size:158 final size:155
Alignment explanation
Indices: 136878--138673 Score: 679
Period size: 158 Copynumber: 11.3 Consensus size: 155
136868 GTAAACCCAT
* * * ** * *
136878 TCTCCTCATTAAGATAAATGATATTGATGATTTTCTTTTGCAAGGAAATCTTTTC-TT-TACCGT
1 TCTCCTCATTAGGATACATGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTTCTACC-T
** * * * *
136941 ATTTTCCTCAAAATCAAAGTTCATCCCCTAAATAAGACAAGCATTGATTCTCAGTA-ACAGTCTC
65 -TTTTGAT-AGAATCAAAGTTCGTCCCTTAAATAAGACAAGCA-TGAATCTCA-TATA-A-TC-C
* * *
137005 CATTTTTTTCAAGATTAGGAAGCCA-AAACACA-
123 CATTCTTTTCAAGATTAGGCA-CCATAAACATAG
* *
137037 TAC-CCTTCATTAGGATACATGACATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTCTTTCTACC
1 T-CTCC-TCATTAGGATACATGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTTCTACC
* * * * *
137101 ATTTTTGATAGAATTAAAGTTTGTCTCTTAAACAAGACAAACATGAATACTCATACTAATTCCCA
64 -TTTTTGATAGAATCAAAGTTCGTCCCTTAAATAAGACAAGCATGAAT-CTCATA-TAA-TCCCA
137166 TTCTTTTCAAGATTAGGCACCATAAACATAG
125 TTCTTTTCAAGATTAGGCACCATAAACATAG
* * * * * * *
137197 TCTTCTCATTAGGATACATGATATTGATGCTTTGGTTTTG-TAGCAAAGTTTTTCTTCCCACTAA
1 TCTCCTCATTAGGATACATGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTTCTAC--C
* * ** * * * * *
137261 TTTTTG-TA-AAGTCTAAGTTCGTGCCACAAATGAGACAAGCAT-AGATTTTAGTAAAGATCTTC
64 TTTTTGATAGAA-TCAAAGTTCGTCCCTTAAATAAGACAAGCATGA-ATCTCA-TATA-ATC-CC
* *** * *
137323 ATTCATTCTT--TGATTAGGCGGAATAAACAAAT
124 ATTC-TT-TTCAAGATTAGGCACCATAAACATAG
* * ** * * *
137355 TCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTGTTTGC--CCT
1 TCTCCTCATTAGGATACATGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTT-CTACCT
*** * * * * * **
137418 ATTCTCCTTAAAATCAAAGTTCATCCCTTAAATAAAACAAGCATTGATTCTTGATATTGTCTCCA
65 -TT-TTGATAGAATCAAAGTTCGTCCCTTAAATAAGACAAGCA-TGAATC-TCATATAATC-CCA
* * *
137483 TTCTTTTCAAGATTGGGAAGCCA-AAACATAT
125 TTCTTTTCAAGATTAGGCA-CCATAAACATAG
* * * * *
137514 TC-CCTTTATTAGGATACACGACATTAATGCTTTGGGGTCTT--AAGAAAAGCTTTTCTTTCTAC
1 TCTCC-TCATTAGGATACATGATATTGATGCTTT--GGTTTTGCAAGAAAAGCTTTTCTTTCTAC
*
137576 CTTTTTGATAGAATCAAAGTAT-GTCCCTTAAATAAGAC-AGACATGAATGCTCACACTAATCCC
63 CTTTTTGATAGAATCAAAGT-TCGTCCCTTAAATAAGACAAG-CATGAAT-CTCATA-TAATCCC
* * *
137639 TATTCTTTTTAGGATTAGGCACCAGAAACATAG
124 -ATTCTTTTCAAGATTAGGCACCATAAACATAG
* * * *
137672 TCTTCTCTTTAGGATGCATGATATTGATGCTTTGGTTTTGCAAGAAAGGCTTTT-TTCCCTCTA-
1 TCTCCTCATTAGGATACATGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTT---TCTAC
* * * *
137735 -TTTTTG-TA-AAGTCTATA-TTCATGCCTTAAATGAGACAAGCATGAAT-T-ATAGTAATGCTC
63 CTTTTTGATAGAA-TC-AAAGTTCGTCCCTTAAATAAGACAAGCATGAATCTCATA-TAAT-C-C
** * * * *
137794 TTCATT-TGATTTGTA-ATTAAGCACAATAAACACAT
123 --CATTCT--TTTCAAGATTAGGCACCATAAACATAG
* * ** * * *
137829 TCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATTG-AAATCTTTTCTTTGC--CT
1 TCTCCTCATTAGGATACATGATATTGATGCTTTGGTTTTGCA-AGAAAAGCTTTTCTTT-CTACC
** * * * ** * * **
137891 TGTTTTCCTTAAAATAAAAGTTCATCTTTTAAATAAGACAAGCATCGATTCTCGTATCTGTCTCC
64 T-TTTT-GATAGAATCAAAGTTCGTCCCTTAAATAAGACAAGCAT-GAATCTCATAT-AATC-CC
* * * *
137956 AATC-TTTCAAGATTAGGAAGCCA-AAACACAT
124 ATTCTTTTCAAGATTAGGCA-CCATAAACATAG
** * * * ** * ** * *
137987 TC-CCTTCCGTAGGATTCAAGAAATTGATGCTTTGGGGTCGCAAGAAAAAATTTTCTTTCCTTCG
1 TCTCC-TCATTAGGATACATGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTT-CTACC
* ** * * * *
138051 TTTTTGATAGAATCAAAGTTTGTCTTTTAAAATAAGACAAACATGAAGACTCCTACCAATCCTCA
64 TTTTTGATAGAATCAAAGTTCGTCCCTT-AAATAAGACAAGCATGAA-TCTCATA-TAATCC-CA
*
138116 TTCTTTTCAGGATTAGGCACCATAAACATAG
125 TTCTTTTCAAGATTAGGCACCATAAACATAG
* ** * * * * * * *
138147 T-TTCTCATTAGGATACACAATATTAACGCTTTGGTTTCGCCAGAAAGGC-TTTCTTCCCACCAA
1 TCTCCTCATTAGGATACATGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTTCTACC--
* * * * * * * * * * *
138210 TTTTTGCA-A-AGTCTAAGTTCGTGCGTCAAATAAGTCAAACATGGAT-TGTAGTAATGATCTTC
64 TTTTTG-ATAGAATCAAAGTTCGTCCCTTAAATAAGACAAGCATGAATCT-CA-T-ATAATC-CC
** * ** *
138272 ATTCATTTT-GTGATTAGGCA-TAGTAAACCCAT
124 ATTC-TTTTCAAGATTAGGCACCA-TAAACATAG
* ** ** * *
138304 TCTCCTCATTAGGATAAATGATATTGATAATTTTCTTTTGCAAGGAAATCTTTTC-TT-TACGCT
1 TCTCCTCATTAGGATACATGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTTCTAC-CT
** * ** * * * * * *
138367 ATTTTCCTAAAAAAAAAGTTCATCCCCTAAATAAGATAAGCATCGATTCTCGTA-ACATTCTCTA
65 -TTTTGATAGAATCAAAGTTCGTCCCTTAAATAAGACAAGCAT-GAATCTCATATA-A-TC-CCA
* * * *
138431 TTCTTTTCAAGATTGGGAAGGCA-AAACACA-
125 TTCTTTTCAAGATTAGGCA-CCATAAACATAG
* *
138461 TAC-CCTTCATTAGGATACATGACATTGATGCTTTGGTATTGCAAGAAAAGCTTTTCTTTCTACC
1 T-CTCC-TCATTAGGATACATGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTTCTACC
* * * *
138525 ATTTTTGATAGAATCAAAGCGT-GTCTCC-TAAATAAGACAAACATTAATGCTCACACTAATCCC
64 -TTTTTGATAGAATCAAAG-TTCGTC-CCTTAAATAAGACAAGCATGAAT-CTCATA-TAAT-CC
* * *
138588 CATTCTTTTTAAGATTAGGCACCACAAACATAA
123 CATTCTTTTCAAGATTAGGCACCATAAACATAG
* ** * * * *
138621 TCTTCTCATTAGGATACACAATATTAACGCTTTGGTTTTGCAGGAAAGGCTTT
1 TCTCCTCATTAGGATACATGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTT
138674 CTTCCCACCA
Statistics
Matches: 1191, Mismatches: 324, Indels: 244
0.68 0.18 0.14
Matches are distributed among these distances:
154 6 0.01
155 4 0.00
156 15 0.01
157 183 0.15
158 438 0.37
159 381 0.32
160 136 0.11
161 20 0.02
162 8 0.01
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.36
Consensus pattern (155 bp):
TCTCCTCATTAGGATACATGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTTCTACCTT
TTTGATAGAATCAAAGTTCGTCCCTTAAATAAGACAAGCATGAATCTCATATAATCCCATTCTTT
TCAAGATTAGGCACCATAAACATAG
Found at i:138345 original size:475 final size:473
Alignment explanation
Indices: 136826--138704 Score: 2362
Period size: 475 Copynumber: 4.0 Consensus size: 473
136816 CCCTTCATTA
* * * * * * *
136826 GGATTCTAGAAATGATCTTTATTCGTTTTGTGATTAGGCACAGTAAACCCATTCTCCTCATTAAG
1 GGATTATAGTAATGATCTTCATTCATTTTGTGATTAGGCACAATAAACACATTCTCCTCATTAGG
* *
136891 ATAAATGATATTGATGATTTTCTTTTGCAAGGAAATCTTTTCTTTACCGTATTTTCCTCAAAATC
66 ATAAATGATATTGATGATTTTCTTTTGCAAGGAAATCTTTTCTTTACC-TATTTTCCTTAAAATA
* * *
136956 AAAGTTCATCCCCTAAATAAGACAAGCATTGATTCTCAGTAACAGTCTCCATTTTTTTCAAGATT
130 AAAGTTCATCCCCTAAATAAGACAAGCATCGATTCTC-GTAACTGTCTCCATTCTTTTCAAGATT
* *
137021 AGGAAGCCAAAACACATACCCTTCATTAGGATACATGACATTGATGCTTTGGTGTTGCAAGAAAA
194 AGGAAGCCAAAACACATACCCTTCATTAGGATACATGACATTGATGCTTTGGGGTCGCAAGAAAA
* * *
137086 GCTTTTCTTTCTACCATTTTTGATAGAATTAAAGTTTGTCTCTTAAACAAGACAAACATGAATAC
259 GCTTTTCTTTCTACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATGC
* *
137151 TCATACTAATTCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACAT
324 TCACACTAA-TCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACAC
* * * * ** *
137216 GATATTGATGCTTTGGTTTTGTAGCAAAGTTTTTCTTCCCACTAATTTTTGTAAAGTCTAAGTTC
388 AATATTAACGCTTTGGTTTTGCAG-AAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTC
*
137281 GTGCCACAAATGAGACAAGCAT
452 GTGCCTCAAATGAGACAAGCAT
* * * ** *
137303 AGATTTTAGTAAAGATCTTCATTCATTCTT-TGATTAGGCGGAATAAACAAATTCTCCTCATTAG
1 GGATTATAGTAATGATCTTCATTCATT-TTGTGATTAGGCACAATAAACACATTCTCCTCATTAG
* * * * *
137367 GATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTGTTTGCCCTATTCTCCTTAAAAT
65 GATAAATGATATTGATGATTTTCTTTTGCAAGGAAATCTTTTCTTT-ACCTATTTTCCTTAAAAT
* * * * * *
137432 CAAAGTTCATCCCTTAAATAAAACAAGCATTGATTCTTG-ATATTGTCTCCATTCTTTTCAAGAT
129 AAAAGTTCATCCCCTAAATAAGACAAGCATCGATTCTCGTA-ACTGTCTCCATTCTTTTCAAGAT
* * * * * * **
137496 TGGGAAGCCAAAACATATTCCCTTTATTAGGATACACGACATTAATGCTTTGGGGTCTTAAGAAA
193 TAGGAAGCCAAAACACATACCCTTCATTAGGATACATGACATTGATGCTTTGGGGTCGCAAGAAA
* * *
137561 AGCTTTTCTTTCTACC-TTTTTGATAGAATCAAAGTATGTCCCTTAAATAAGACAGACATGAATG
258 AGCTTTTCTTTCTACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATG
* * * * *
137625 CTCACACTAATCCCTATTCTTTTTAGGATTAGGCACCAGAAACATAGTCTTCTCTTTAGGATGCA
323 CTCACACTAATCCC-ATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACA
** * * * * *
137690 TGATATTGATGCTTTGGTTTTGCAAGAAAGGCTTTTTTCCC-TCTATTTTTGTAAAGTCTATA-T
387 CAATATTAACGCTTTGGTTTTGC-AGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTA-AGT
* *
137753 TCATGCCTTAAATGAGACAAGCAT
450 TCGTGCCTCAAATGAGACAAGCAT
* * * * *
137777 GAATTATAGTAATGCTCTTCATTTGA-TTTGTAATTAAGCACAATAAACACATTCTCCTCATTAG
1 GGATTATAGTAATGATCTTCA-TTCATTTTGTGATTAGGCACAATAAACACATTCTCCTCATTAG
** * *
137841 GATAAATGATATTGATGATTTTCTTTTGCATTGAAATCTTTTCTTTGCCTTGTTTTCCTTAAAAT
65 GATAAATGATATTGATGATTTTCTTTTGCAAGGAAATCTTTTCTTTACC-TATTTTCCTTAAAAT
*** * *
137906 AAAAGTTCATCTTTTAAATAAGACAAGCATCGATTCTCGTATCTGTCTCCAATC-TTTCAAGATT
129 AAAAGTTCATCCCCTAAATAAGACAAGCATCGATTCTCGTAACTGTCTCCATTCTTTTCAAGATT
* ** * * *
137970 AGGAAGCCAAAACACATTCCCTTCCGTAGGATTCAAGAAATTGATGCTTTGGGGTCGCAAGAAAA
194 AGGAAGCCAAAACACATACCCTTCATTAGGATACATGACATTGATGCTTTGGGGTCGCAAGAAAA
** * * *
138035 AATTTTCTTTCCT-TCGTTTTTGATAGAATCAAAGTTTGTCTTTTAAAATAAGACAAACATGAA-
259 GCTTTTCTTT-CTACCATTTTTGATAGAATCAAAGTTTGTCTCTT-AAATAAGACAAACATGAAT
* *
138098 GACTC-CTACCAATCCTCATTCTTTTCAGGATTAGGCACCATAAACATAGT-TTCTCATTAGGAT
322 G-CTCAC-ACTAATCC-CATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATTAGGAT
* *
138161 ACACAATATTAACGCTTTGGTTTCGCCAGAAAGGCTTTCTTCCCACCAATTTTTGCAAAGTCTAA
384 ACACAATATTAACGCTTTGGTTTTG-CAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAA
* * * *
138226 GTTCGTGCGTCAAATAAGTCAAACAT
448 GTTCGTGCCTCAAATGAGACAAGCAT
* * * *
138252 GGATTGTAGTAATGATCTTCATTCATTTTGTGATTAGGCATAGTAAACCCATTCTCCTCATTAGG
1 GGATTATAGTAATGATCTTCATTCATTTTGTGATTAGGCACAATAAACACATTCTCCTCATTAGG
* *
138317 ATAAATGATATTGATAATTTTCTTTTGCAAGGAAATCTTTTCTTTACGCTATTTTCC-TAAAAAA
66 ATAAATGATATTGATGATTTTCTTTTGCAAGGAAATCTTTTCTTTAC-CTATTTTCCTTAAAATA
* *
138381 AAAGTTCATCCCCTAAATAAGATAAGCATCGATTCTCGTAACAT-TCTCTATTCTTTTCAAGATT
130 AAAGTTCATCCCCTAAATAAGACAAGCATCGATTCTCGTAAC-TGTCTCCATTCTTTTCAAGATT
* * ** *
138445 GGGAAGGCAAAACACATACCCTTCATTAGGATACATGACATTGATGCTTTGGTATTGCAAGAAAA
194 AGGAAGCCAAAACACATACCCTTCATTAGGATACATGACATTGATGCTTTGGGGTCGCAAGAAAA
** * *
138510 GCTTTTCTTTCTACCATTTTTGATAGAATCAAAGCGTGTCTCCTAAATAAGACAAACATTAATGC
259 GCTTTTCTTTCTACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATGC
* * *
138575 TCACACTAATCCCCATTCTTTTTAAGATTAGGCACCACAAACATAATCTTCTCATTAGGATACAC
324 TCACACTAAT-CCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACAC
*
138640 AATATTAACGCTTTGGTTTTGCAGGAAAGGCTTTCTTCCCACCAGTTTTTGTAAAGTCTAAGTTC
388 AATATTAACGCTTTGGTTTTGCA-GAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTC
138705 ATTCGTTTTG
Statistics
Matches: 1203, Mismatches: 170, Indels: 60
0.84 0.12 0.04
Matches are distributed among these distances:
473 77 0.06
474 376 0.31
475 510 0.42
476 96 0.08
477 140 0.12
478 4 0.00
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (473 bp):
GGATTATAGTAATGATCTTCATTCATTTTGTGATTAGGCACAATAAACACATTCTCCTCATTAGG
ATAAATGATATTGATGATTTTCTTTTGCAAGGAAATCTTTTCTTTACCTATTTTCCTTAAAATAA
AAGTTCATCCCCTAAATAAGACAAGCATCGATTCTCGTAACTGTCTCCATTCTTTTCAAGATTAG
GAAGCCAAAACACATACCCTTCATTAGGATACATGACATTGATGCTTTGGGGTCGCAAGAAAAGC
TTTTCTTTCTACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATGCTC
ACACTAATCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACAAT
ATTAACGCTTTGGTTTTGCAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGC
CTCAAATGAGACAAGCAT
Found at i:139451 original size:749 final size:749
Alignment explanation
Indices: 138051--139453 Score: 1924
Period size: 749 Copynumber: 1.9 Consensus size: 749
138041 CTTTCCTTCG
* * * *
138051 TTTTTGATAGAATCAAAGTTTGTCTTTTAAAATAAGACAAACATGAAGACTCCTACCAATCCTCA
1 TTTTTAATAGAATCAAAGTTTATCTCTTAAAATAAGACAAACATGAAGACTCATACCAATCCTCA
* * * **
138116 TTCTTTTCAGGATTAGGCACCATAAACATAGTTTCTCATTAGGATACACAATATTAACGCTTTGG
66 TTCTTTTCAGGATTAGGCACCAAAAACATAGATTCTCATCAGGATACACAATATTAACGCACTGG
* * * * * *
138181 TTTCGCCAGAAAGGCTTTCTTCCCACCAATTTTTGCAAAGTCTAAGTTCGTGCGTCAAATAAGTC
131 TTTCGCAACAAAAGCTTTCTTCCCACCAATTTTTGCAAAGTCTAACTTCGTGCCTCAAATAAGCC
* * * *
138246 AAACATGGATTGTAGTAATGATCTTCATTCATTTTGTGATTAGGCATAGTAAACCCATTCTCCTC
196 AAACATGGATTCTAGTAAGGATCTTCATTCATTTTGGGATTAGGCATAGTAAACACATTCTCCTC
* ** * *
138311 ATTAGGATAAATGATATTGATAATTTTCTTTTGCAAGGAAATCTTTTCTTTACGCTATTTTCCTA
261 ACTAGGATAAACAATATTGATAATTTTCTTTTGCAAGAAAATCTTTTCTTTACCCTATTTTCCTA
* * *
138376 AAAAAAAAGTTCATCCCCTAAATAAGATAAGCATCGATTCTCGTAACATTCTCTATTCTTTTCAA
326 AAAAAAAAGTTCATCCCCTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAA
** *
138441 GATTGGGAAGGCAAAACACATACCCTTCATTAGGATACATGACATTGATGCTTTGGTATTGCAAG
391 GATTGGGAAACCAAAACACATACCCTTCATTAGGATACATGACATTGATGCTTTGGTATCGCAAG
* * *
138506 AAAAGCTTTTCTTTCTACCATTTTTGATAGAATCAAAGCGTGTCTCCTAAATAAGACAAACATTA
456 AAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGCGTGTATCCTAAATAAGACAAACATGA
* * *
138571 ATGCTCACACTAATCCCCATTCTTTTTAAGATTAGGCACCACAAACATAATCTTCTCATTAGGAT
521 ATACTCACACCAATCCCCATTCTTTTTAAGATTAGGCACCACAAACATAATCTTCTAATTAGGAT
** * *
138636 ACACAATATTAACGCTTTGGTTTTGCAGGAAAGGCTTTCTTCCCACCAGTTTTTGTAAAGTCTAA
586 ACACAATATTAACGCTTTGGTTTCACAGCAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAA
138701 GTTCATTCGTTTTGTGATTAGGCATAATAAACACATCTCCTCATTTAGATACTTGACATTGATGC
651 GTTCATTCGTTTTGTGATTAGGCATAATAAACACATCTCCTCATTTAGATACTTGACATTGATGC
138766 TCTGGTGCCGCAATAAAAGCTTTTCTTTCAACTA
716 TCTGGTGCCGCAATAAAAGCTTTTCTTTCAACTA
* * *
138800 TTTTTAATAGAATCAAAGTTTATCTCTT-AAATAAGACAATCATGAATACTCATAGCAATCC-CT
1 TTTTTAATAGAATCAAAGTTTATCTCTTAAAATAAGACAAACATGAAGACTCATACCAATCCTC-
* * * *
138863 ATTCTTTTCAGGATTAGGCGCCAAAAACATAGCATTCTCATCAGGATACACGATATTGATGCACT
65 ATTCTTTTCAGGATTAGGCACCAAAAACATAG-ATTCTCATCAGGATACACAATATTAACGCACT
** *
138928 GGTTTCGCAACAAAAG-TTTCTTCTGACCAATTTTTGCAAAGTCTAACTTCGT-CACTCAAATGA
129 GGTTTCGCAACAAAAGCTTTCTTCCCACCAATTTTTGCAAAGTCTAACTTCGTGC-CTCAAATAA
*
138991 GCCAAACTTGGATTCTAGTAAGGATCTTCATTC-TCTTTGGGATTAGGCATAGTAAACACATTCT
193 GCCAAACATGGATTCTAGTAAGGATCTTCATTCAT-TTTGGGATTAGGCATAGTAAACACATTCT
* * *
139055 CCTCACTAGGATAAACAATATTGATGATTTTCTTTTGCATGAAAATCGTTTT-TTTGCCCTATTT
257 CCTCACTAGGATAAACAATATTGATAATTTTCTTTTGCAAGAAAATC-TTTTCTTTACCCTATTT
** * * * * *
139119 TCCTCAAAATCAAAGTTCAT-ACCTCAATTAGGACAAGCATTGATTCTCGTAGCAGTCTCCATTC
321 TCCT-AAAAAAAAAGTTCATCCCCT-AAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTC
* * * * *
139183 TTTTCAAGATTGGGAAACCAAAACACATTCCTTTCTTTAGGATATATGACATTGATGCTTTGGTG
384 TTTTCAAGATTGGGAAACCAAAACACATACCCTTCATTAGGATACATGACATTGATGCTTTGGTA
* ** ** * *
139248 TCGCAAGAAAAGTTTTTCTTTCCACTGTTTTTGATAGAATCAAAGTTTGTATCTTAAATAAGATA
449 TCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGCGTGTATCCTAAATAAGACA
* * * *
139313 AACATGAATACTCATACCAATCCCCATTCTTTTTAGGATTAGGCACCATAAACATAGTCTT-TAA
514 AACATGAATACTCACACCAATCCCCATTCTTTTTAAGATTAGGCACCACAAACATAATCTTCT-A
* * * * *
139377 ATTAGGATACACGATATTGATGCTTTGGTTTCATAGCAAGGGCTTTCTTCCCACCAATTTTTGTA
578 ATTAGGATACACAATATTAACGCTTTGGTTTCACAGCAAAGGCTTTCTTCCCACCAATTTTTGTA
139442 CAA-TCTAAGTTC
643 -AAGTCTAAGTTC
139454 GTGCTATAAA
Statistics
Matches: 563, Mismatches: 82, Indels: 18
0.85 0.12 0.03
Matches are distributed among these distances:
747 3 0.01
748 214 0.38
749 344 0.61
750 2 0.00
ACGTcount: A:0.31, C:0.20, G:0.14, T:0.35
Consensus pattern (749 bp):
TTTTTAATAGAATCAAAGTTTATCTCTTAAAATAAGACAAACATGAAGACTCATACCAATCCTCA
TTCTTTTCAGGATTAGGCACCAAAAACATAGATTCTCATCAGGATACACAATATTAACGCACTGG
TTTCGCAACAAAAGCTTTCTTCCCACCAATTTTTGCAAAGTCTAACTTCGTGCCTCAAATAAGCC
AAACATGGATTCTAGTAAGGATCTTCATTCATTTTGGGATTAGGCATAGTAAACACATTCTCCTC
ACTAGGATAAACAATATTGATAATTTTCTTTTGCAAGAAAATCTTTTCTTTACCCTATTTTCCTA
AAAAAAAAGTTCATCCCCTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAA
GATTGGGAAACCAAAACACATACCCTTCATTAGGATACATGACATTGATGCTTTGGTATCGCAAG
AAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGCGTGTATCCTAAATAAGACAAACATGA
ATACTCACACCAATCCCCATTCTTTTTAAGATTAGGCACCACAAACATAATCTTCTAATTAGGAT
ACACAATATTAACGCTTTGGTTTCACAGCAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAA
GTTCATTCGTTTTGTGATTAGGCATAATAAACACATCTCCTCATTTAGATACTTGACATTGATGC
TCTGGTGCCGCAATAAAAGCTTTTCTTTCAACTA
Found at i:139685 original size:473 final size:471
Alignment explanation
Indices: 138744--140090 Score: 1625
Period size: 473 Copynumber: 2.8 Consensus size: 471
138734 CATCTCCTCA
* * * * * * *
138744 TTTA-GATACTTGACATTGATGCTCTGGTGCCGCAATAAAAGCTTTTCTTTCAACTATTTTTAAT
1 TTTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACTGTTTTTGAT
* * * *
138808 AGAATCAAAGTTTATCTCTTAAATAAGACAATCATGAATACTCATAGCAATCCCTATTCTTTTCA
66 AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACCAATCCCTATTCTTTTTA
* * * **
138873 GGATTAGGCGCCAAAAACATAG-CATTCTCATCAGGATACACGATATTGATGCACTGGTTTCGCA
131 GGATTAGGCACCATAAACATAGTC-TTCTCATTAGGATACACGATATTGATGCTTTGGTTT--CA
* ** * * *
138937 A-CAAAAGTTTCTTCTGACCAATTTTTGCAAAGTCTAACTTCGT-C-ACTCAAATGAGCCAA-AC
193 AGCAAAGGTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCTA-T-AAATGAGACAAGA-
* ** ** *
138998 TTGGATTCTAGTAAGGATCTTCATTC-TCTTTGGGATTAGGCATAGTAAACACATTCTCCTCACT
255 --GGATTCTAGTAATGATCTTCATTCAT-TTTGTTATTAGGCGCAATAAACACATTCTCCTCAC-
* *
139062 AGGATAAACAATATTGATGATTTTCTTTTGCATGAAAATCGTTTT-TTTGCCCTATTTTCCTCAA
316 AGGATAAATAATATTGATGATTTTCTTTTGCATGAAAATC-TTTTCTTTGCCCTATTTTCCTTAA
* ** * *
139126 AATCAAAGTTCATACCTCAATTAGGACAAGCATTGATTCTCGTAGCAGTCTCCATTCTTTTCAAG
380 AATCAAAGTTCATACCTCAAATAAAACAAGCATTGAATCTCGTAGCAGTCTCCATTCTTTCCAAG
139191 ATTGGGAAACCAAAACACATTCCTTTC
445 ATTGGGAAACCAAAACACATTCCTTTC
* *
139218 TTTAGGATATATGACATTGATGCTTTGGTGTCGCAAGAAAAGTTTTTCTTTCCACTGTTTTTGAT
1 TTTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACTGTTTTTGAT
* * *
139283 AGAATCAAAGTTTGTATCTTAAATAAGATAAACATGAATACTCATACCAATCCCCATTCTTTTTA
66 AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACCAATCCCTATTCTTTTTA
*
139348 GGATTAGGCACCATAAACATAGTCTT-TAAATTAGGATACACGATATTGATGCTTTGGTTTCATA
131 GGATTAGGCACCATAAACATAGTCTTCT-CATTAGGATACACGATATTGATGCTTTGGTTTCA-A
*
139412 GCAAGGGCTTTCTTCCCACCAATTTTTGTACAA-TCTAAGTTCGTGCTATAAATGAGACAAGA-G
194 GCAAAGG-TTTCTTCCCACCAATTTTTGTA-AAGTCTAAGTTCGTGCTATAAATGAGACAAGAGG
* * * *
139475 ATTCTAATAATGATCTTCGTTCATTTTGTTATTAGGCGCAATAAACACTTTCTCCTCAGCAAGAT
257 ATTCTAGTAATGATCTTCATTCATTTTGTTATTAGGCGCAATAAACACATTCTCCTCA-CAGGAT
** * * * *
139540 AAATGCTATTGATGATTTT-TATTTGCATGGAAATCTTTTCTTTGCCCTATTCTCCTTAAAGTCG
321 AAATAATATTGATGATTTTCT-TTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCA
* * *
139604 AAGTTCAT-CTCTTAAATAAAACAAGCATTTAATCTCGATA-CATTCTCCATTCTTTCCAAGATT
385 AAGTTCATAC-CTCAAATAAAACAAGCATTGAATCTCG-TAGCAGTCTCCATTCTTTCCAAGATT
*
139667 GGGAAGCCAAAACACATTCCTTTC
448 GGGAAACCAAAACACATTCCTTTC
*
139691 TTTAGGATACATGACATTGATGGTTTGGTGTC-CTAAGAAAAGCTTTTCTTTCCACTGTTTTTGA
1 TTTAGGATACATGACATTGATGCTTTGGTGTCGC-AAGAAAAGCTTTTCTTTCCACTGTTTTTGA
* * * * * *
139755 TAGAATCAAAGTATGTCTCTTAAATAAGACAAACATGAATGCTGACACTAATCCTTATTC-TTTT
65 TAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACCAATCCCTATTCTTTTT
*
139819 CGAGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTTGC
130 AG-GATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGG-TTT-C
* * * * * *
139884 AAG-AAAGGTTTTCTTCCC-TCTATTTTTGTAAAGTCTATGTTCATGCCT-TAAGTGGGACAAGC
192 AAGCAAAGG-TTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTG-CTATAAATGAGACAAG-
* * * * *
139946 AAGGATTATAGTATTGATCTTCATTCATTTTCTTATTAGGTGCAATAAACACATTCTCCTCATTA
254 -AGGATTCTAGTAATGATCTTCATTCATTTTGTTATTAGGCGCAATAAACACATTCTCCTCA-CA
*
140011 GGATAAATAATATTGATGATTTTCTTTTGCACGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAA
317 GGATAAATAATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAA
140076 TCAAAGTTCATACCT
382 TCAAAGTTCATACCT
140091 GTTAGGATCT
Statistics
Matches: 750, Mismatches: 95, Indels: 55
0.83 0.11 0.06
Matches are distributed among these distances:
471 2 0.00
472 43 0.06
473 354 0.47
474 17 0.02
475 286 0.38
476 42 0.06
477 5 0.01
478 1 0.00
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.37
Consensus pattern (471 bp):
TTTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACTGTTTTTGAT
AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACCAATCCCTATTCTTTTTA
GGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCAAGC
AAAGGTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCTATAAATGAGACAAGAGGATTC
TAGTAATGATCTTCATTCATTTTGTTATTAGGCGCAATAAACACATTCTCCTCACAGGATAAATA
ATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTC
ATACCTCAAATAAAACAAGCATTGAATCTCGTAGCAGTCTCCATTCTTTCCAAGATTGGGAAACC
AAAACACATTCCTTTC
Found at i:140502 original size:13 final size:13
Alignment explanation
Indices: 140484--140508 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
140474 ACACACAGTA
140484 TGTATCGATACAT
1 TGTATCGATACAT
140497 TGTATCGATACA
1 TGTATCGATACA
140509 CCATAAAATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:140505 original size:32 final size:33
Alignment explanation
Indices: 140464--140531 Score: 102
Period size: 33 Copynumber: 2.1 Consensus size: 33
140454 GTAGCCAAAC
**
140464 TTGTATCGATACA-CACAGTATGTATCGATACA
1 TTGTATCGATACACCACAAAATGTATCGATACA
*
140496 TTGTATCGATACACCATAAAATGTATCGATACA
1 TTGTATCGATACACCACAAAATGTATCGATACA
140529 TTG
1 TTG
140532 GCTTATAACG
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
32 13 0.41
33 19 0.59
ACGTcount: A:0.35, C:0.18, G:0.15, T:0.32
Consensus pattern (33 bp):
TTGTATCGATACACCACAAAATGTATCGATACA
Found at i:146042 original size:13 final size:13
Alignment explanation
Indices: 146024--146060 Score: 65
Period size: 13 Copynumber: 2.8 Consensus size: 13
146014 ACAGCATTCT
146024 TTGTATCGATACA
1 TTGTATCGATACA
146037 TTGTATCGATACA
1 TTGTATCGATACA
*
146050 CTGTATCGATA
1 TTGTATCGATA
146061 TAGGGGGATT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.30, C:0.16, G:0.16, T:0.38
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:148289 original size:21 final size:23
Alignment explanation
Indices: 148251--148296 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 23
148241 TAACAAAGGA
*
148251 TTGAATAAAACCAGAAAT-TATT
1 TTGAATAAAACCAAAAATGTATT
*
148273 TTGAA-AATACCAAAAATGTATT
1 TTGAATAAAACCAAAAATGTATT
148295 TT
1 TT
148297 ATTCAATTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 10 0.48
22 11 0.52
ACGTcount: A:0.48, C:0.09, G:0.09, T:0.35
Consensus pattern (23 bp):
TTGAATAAAACCAAAAATGTATT
Found at i:150864 original size:474 final size:474
Alignment explanation
Indices: 149386--152525 Score: 3362
Period size: 474 Copynumber: 6.6 Consensus size: 474
149376 TTTCAATACC
* * *
149386 TTAAATAAGACAAGCATCGATTCTCATAATAGTCTCCATTCTTTTAAAGATTAGGAAGCCAAAAC
1 TTAAATAAGACAAGCATCGATTCTCGTAATTGTCTCCATT-TTTTCAAGATTAGGAAGCCAAAAC
* * * *
149451 ACATACCCTTAATTAGGATGCATGACATTGATGCTTTGGTGTCGCACGAAAAGCTTTTCTTTCCA
65 ACATACCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCA
* * * * *
149516 CCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAAAAACGTGAATACTCATACCAATCCC
130 CCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCACACTAAT-CC
* * *
149581 CATTCTTTTCAGGATTGGGCACCATAAACATAGTCTT-TAAATTAGGATACACGATTTTGATGCT
194 CATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCT-CATTAGGATACACGATATTGATGCT
* * *
149645 TTGGTTTCATTGCAAG---GGCTTTCTTCCCACCAATTTTTGTACAGTCTAAGTTCATGCCAT-A
258 TTGGTTTC---GCAAGAAAGGCTTTCTTCCCTCCAATTTTTGTAAAGTCTAAGTTCGTGCC-TCA
* * * **
149706 AATGAGACAAGCATAGATTTTAATAATGATCTTCATTCATTTTGTGATTAGGTGCAATAAACATT
319 AATGAGACAAGCATAGATTATAGTAATGATCTTCATTCATTTTGTGATTAGGCGCAATAAACACA
* ** * * *
149771 TTCTCCTTAGCAAGATAAATGCTATTGATGATTTT-TATTTGCAT-GGAAATCTTTTCTTTGCCC
384 TTCTCCTCATTAGGATAAATGATATTGATGATTTTCT-TTTACATAGGAAATCTTTTCTTTG-CC
* **
149834 TATTCTCCTTAAAATCGAAGTTCAT-CT
447 TATTTTCCTTAAAATAAAAGTTCATCCT
* ** * * * * *
149861 CTTAAATAAAACAAGCATTTAATCTTGATAAAT-TCTCCATTCTTTCCAAGATTGGGAAGCCAAA
1 -TTAAATAAGACAAGCATCGATTCTCG-TAATTGTCTCCATT-TTTTCAAGATTAGGAAGCCAAA
* * * *
149925 ACACATTCCTTTCTTTAGGATACATGACATTGATGGTTTGGTGTC-CTAAGAAAAGCTTTTCTTT
63 ACACATACCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCAC-AAGAAAAGCTTTTCTTT
*** ** * *
149989 CCACTGGTTTTGATAGAATCAAAGTACGTCATCTTAAATAAGACAAACATTAATGCTCACACTAA
127 CCACCATTTTTGATAGAATCAAAGTTTGTC-TCTTAAATAAGACAAACATGAATACTCACACTAA
150054 TCCCCATTCTTTTC-GAGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGA
191 T-CCCATTCTTTTCAG-GATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGA
* * * * *
150118 TGCTTTGGTTTTGCAAGAAAGGTTTTCTTCCCT-CTATTTTTGTAAAGTCTATGTTCATGCCTCA
254 TGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCTCCAATTTTTGTAAAGTCTAAGTTCGTGCCTCA
* * * * * * *
150182 AGTGGGACAAGCA-AGGATTATAGTATTGATCTTCATTCATTTTCTTATTAGGTGCAATAAATAC
319 AATGAGACAAGCATA-GATTATAGTAATGATCTTCATTCATTTTGTGATTAGGCGCAATAAACAC
* * *
150246 ATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCACA-AAAATCTTTTCTTTGCAC
383 ATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTACATAGGAAATCTTTTCTTTGC-C
* *
150310 TATTTTCCTTAAAATCAAAGTTCATAAC-
447 TATTTTCCTTAAAATAAAAGTTCAT-CCT
* * * *
150338 TTAAATAAGACAAGCATCGATTCTCATAATAGTCTCCATTCTTTAAAGATTAGGAAGCCAAAACA
1 TTAAATAAGACAAGCATCGATTCTCGTAATTGTCTCCATTTTTTCAAGATTAGGAAGCCAAAACA
* * * *
150403 CATACCCTTAATTAGGATGCATGACATTGATGCTTTGGTGTCACACGAAAAGCTTTTCTTTTCAC
66 CATACCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCAC
* * * *
150468 CGTTTTTGATATAATCAAAGTTTGTCTCCTAAATAAGACAAACATGAATACTCAAACTAATCCCA
131 CATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCACACTAATCCCA
* * * * *
150533 TTTGTTTTTAGGATTAGGCACCATAAACTTAGTCTTCTCATTAGGATACACGCTGTTGATGCTTT
196 -TTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTT
* * * * *
150598 GGTTTCACAAGAAAGGCTTTCTTCCCTCCAATTTTTGTAAAGTCTATGATCGTGCCACAAATGAC
260 GGTTTCGCAAGAAAGGCTTTCTTCCCTCCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAG
* * *
150663 ACAAGCATAGATTCTAGTAATGATCTTC-TTCAATTTGTGATTAGGCGCAAT-AACACATGCTCC
325 ACAAGCATAGATTATAGTAATGATCTTCATTCATTTTGTGATTAGGCGCAATAAACACATTCTCC
* * * * * * *
150726 TCGTTAGAAAAAATGATATGGATGATTTTCTTTCACATAGG-AATCTTTTCTTAGCCGTATTTCC
390 TCATTAGGATAAATGATATTGATGATTTTCTTTTACATAGGAAATCTTTTCTTTGCC-TATTTTC
*
150790 CTTAAAATCAAAGTTCA-CACT
454 CTTAAAATAAAAGTTCATC-CT
* * * *
150811 TTAAATAAGACAAGGATCGATTCTCGTAGTTGTCTCCCTTTTTTTAGAGATTAGGAAGCCAAAAC
1 TTAAATAAGACAAGCATCGATTCTCGTAATTGTCTCCATTTTTTCA-AGATTAGGAAGCCAAAAC
* * * * *
150876 ACATATCCTTAATTAGGATACATGACATTGATGCTTTGATGCCACAAGAAAAGCTTTTATTTCCA
65 ACATACCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCA
* * * **
150941 CCATTTTTTATAGAATCAAAGTTTATCTTTTAAATAAGACAAACATGAATACTTGCACTAATCCC
130 CCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCACACTAATCCC
* * * * * * * * *
151006 ATTTCTTTTCAGGATTTGGCTCTATAAATATAGTCTTTTCATCAGGATACATGATATTAAAGCTT
195 A-TTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTT
* *
151071 TGGTTTCGTAAGAAAGGCTTTCTT-CCTACCAATTTTTGTAAGGTCTAAGTTCGTGCCTCAAATG
259 TGGTTTCGCAAGAAAGGCTTTCTTCCCT-CCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATG
* * * * *
151135 AGACAAACATTGAATCTAGTAAT-AGTCTTCATTCGTTTTGTGATTAGGCGCAATAAACACATTC
323 AGACAAGCATAGATTATAGTAATGA-TCTTCATTCATTTTGTGATTAGGCGCAATAAACACATTC
* * *
151199 TCCTCATTAGGATAAATGATGTTGATGAATTTT-TTTTGC-TTGGAAATCTTTTCTTTGCCCTAT
387 TCCTCATTAGGATAAATGATATTGATG-ATTTTCTTTTACATAGGAAATCTTTTCTTTG-CCTAT
*
151262 TTTCCTTAAAATAAAAGTTCATCCA
450 TTTCCTTAAAATAAAAGTTCATCCT
* * * * * * * *
151287 TTGAATAAGGCAAGCATCGATTCTCATAATAGTCACAATTCTTTTCAAGATTGGGAAGCGAAAAC
1 TTAAATAAGACAAGCATCGATTCTCGTAATTGTCTCCATT-TTTTCAAGATTAGGAAGCCAAAAC
* * * * * *
151352 ACATACCCTTCATTAGGATAAAAGATAGTGATGCTTTGGTGCCACAAGAAAAGCTTTTCTTTCTA
65 ACATACCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCA
* * * * *
151417 CC-TTTTTGATAGAATCAAAGTATGTCCCATAAATAAGACAAATATGAATGCTCACACTAATCCC
130 CCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCACACTAATCCC
*
151481 TATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCTTTAGGATACACGATATTGATGCTT
195 -ATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTT
* * * * *
151546 TGGTTTTGCAAGAAAGGCTTTTTTCCCT-CTATTTTTGTAAAATCTATGTTCGTGCCTCAAAT-A
259 TGGTTTCGCAAGAAAGGCTTTCTTCCCTCCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGA
* * * * * * *
151609 GGACAAGCATGGATTATAGTAATGCTCTTCATTTGA-TTTGTAATTAAGCACTATAAACACATTC
324 -GACAAGCATAGATTATAGTAATGATCTTCA-TTCATTTTGTGATTAGGCGCAATAAACACATTC
* * * ** *
151673 TCCTTATTAGGGTAAATGATATTGATGATTTTCTTTTGC-TTTGAAATCTTTTCTTTGCCTTGTT
387 TCCTCATTAGGATAAATGATATTGATGATTTTCTTTTACATAGGAAATCTTTTCTTTGCC-TATT
151737 TTCCTTAAAATAAAAGTTCAT-CT
451 TTCCTTAAAATAAAAGTTCATCCT
* *
151760 CTTAAATAAGACAAGCATCGATTCTCGTATTTGTCTCCAATCTTTTCAAGATTAGGAAGCCAAAA
1 -TTAAATAAGACAAGCATCGATTCTCGTAATTGTCTCC-ATTTTTTCAAGATTAGGAAGCCAAAA
* ** ** * * * * **
151825 CACATTCCCTTCCGTAGGATTTAAGAAATTGATGCTTTAGG-GTCGCATGAAAAAATTTTCTTTC
64 CACATACCCTTCATTAGGATACATGACATTGATGCTTT-GGTGTCACAAGAAAAGCTTTTCTTTC
** * * *
151889 CTTCATTTTTGATAGAATCAAAGTTTGTCTTTTAAATAAGACAAACATGAA-ATCTCAAACCAAT
128 CACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATA-CTCACACTAAT
* * * ** * **
151953 CCCCATTCTTTTTAGGATTAGGCACCATGAACATAGT-TCCTCATTAGGATACAAAATATTAACA
192 -CCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATG
* * * * *
152017 CTTCGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGCACAGTCTAAGTTTGT-CCGTCAA
256 CTTTGGTTTCGCAAGAAAGGCTTTCTTCCCTCCAATTTTTGTAAAGTCTAAGTTCGTGCC-TCAA
* * * * * * * * * * *
152081 ATAAGTCAAACATGGATTGTAGTAATGATCTTTATTCGTTTTGTGATTATGCACAGTAAACCCAT
320 ATGAGACAAGCATAGATTATAGTAATGATCTTCATTCATTTTGTGATTAGGCGCAATAAACACAT
* * * *
152146 TTTCCTCTTTAGGATAAATGATAATGATGATTTTCTTTTACA-AGGAAATCTTTTCTTTAACCTA
385 TCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTACATAGGAAATCTTTTCTTT-GCCTA
* *
152210 TTTTCC-TAAAAAAAAAGTTCATCCC
449 TTTTCCTTAAAATAAAAGTTCATCCT
* * * * * *
152235 CTAAATAAGATAAGCATTGATTCTCGTAACAT-TCTCTATTCTTTTCAAGATTGGGAAGCCAAAA
1 TTAAATAAGACAAGCATCGATTCTCGTAA-TTGTCTCCATT-TTTTCAAGATTAGGAAGCCAAAA
* ** *
152299 CATATACCCTTCATTAGGATACATGACATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTCTTTCT
64 CACATACCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCC
* * ***
152364 AACATTTTTGATTGAATCAAAACGTGTCTCTTAAAT-A-AC--AC-T--A-A-TC-C-C---T--
129 ACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCACACTAATCC
* * *
152413 -ATTGTTTTCAGGATTAGGCACCATAAACATAGTCTTCTAATTAGGATACACGATATTAATGCTT
194 CATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTT
* *
152477 TGGTTTTGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAG
259 TGGTTTCGCAAGAAAGGCTTTCTTCCCTCCAATTTTTGTAAAGTCTAAG
152526 CTCATTGTTT
Statistics
Matches: 2241, Mismatches: 364, Indels: 137
0.82 0.13 0.05
Matches are distributed among these distances:
456 30 0.01
457 69 0.03
460 1 0.00
463 1 0.00
465 2 0.00
467 2 0.00
469 1 0.00
470 2 0.00
472 4 0.00
473 139 0.06
474 842 0.38
475 525 0.23
476 497 0.22
477 124 0.06
478 2 0.00
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.36
Consensus pattern (474 bp):
TTAAATAAGACAAGCATCGATTCTCGTAATTGTCTCCATTTTTTCAAGATTAGGAAGCCAAAACA
CATACCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCAC
CATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCACACTAATCCCA
TTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTG
GTTTCGCAAGAAAGGCTTTCTTCCCTCCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGA
CAAGCATAGATTATAGTAATGATCTTCATTCATTTTGTGATTAGGCGCAATAAACACATTCTCCT
CATTAGGATAAATGATATTGATGATTTTCTTTTACATAGGAAATCTTTTCTTTGCCTATTTTCCT
TAAAATAAAAGTTCATCCT
Found at i:151303 original size:949 final size:942
Alignment explanation
Indices: 149386--152523 Score: 3554
Period size: 949 Copynumber: 3.3 Consensus size: 942
149376 TTTCAATACC
149386 TTAAATAAGACAAGCATCGATTCTCATAATAGTCTCCATTCTTTTAAAGATTAGGAAGCCAAAAC
1 TTAAATAAGACAAGCATCGATTCTCATAATAGTCTCCATTCTTTTAAAGATTAGGAAGCCAAAAC
* * * *
149451 ACATACCCTTAATTAGGATGCATGACATTGATGCTTTGGTGTCGCACGAAAAGCTTTTCTTTCCA
66 ACATACCCTTAATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCTA
* * * *
149516 CCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAAAAACGTGAATACTCATACCAATCCC
131 CCGTTTTTGATAGAATCAAAGTTTGTCTCCTAAATAAGACAAACATGAATACTCA-ACTAAT-CC
* *
149581 CATTCTTTTCAGGATTGGGCACCATAAACATAGTCTT-TAAATTAGGATACACGATTTTGATGCT
194 CATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCT-AATTAGGATACACGATATTGATGCT
** * * * * *
149645 TTGGTTTCA-TTGCAAGGGCTTTCTTCCCACCAATTTTTGTACAGTCTAAGTTCATGCCATAAAT
258 TTGGTTTCACAAG-AAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTATGTTCGTGCCACAAAT
* * * * * *
149709 GAGACAAGCATAGATTTTAATAATGATCTTCATTCATTTTGTGATTAGGTGCAATAA-ACATTTT
322 GAGACAAGCATAGATTATAGTAATGATCTTCATTCAATTTGTGATTAGGCGCAATAACACATCTC
* *
149773 CTCCTTAGCAAGATAAATGCTATTGATGATTTT-TATTTGCATGGAAATCTTTTCTTTGCCCTA-
387 CTCATTAG-AA-A-AAATGATATTGATGATTTTCT-TTTGCATGG-AATCTTTTCTTTGCCCTAT
* * ** * * *
149836 TTCTCCTTAAAATCGAAGTTCATCTCTTAAATAAAACAAGCATTTAATCTTGATAAAT-TCTCCA
447 TTC-CCTTAAAATCAAAGTTCATCTCTTAAATAAGACAAGCATCGATTCTCG-TAATTGTCTCCA
* * * *
149900 TTCTTTCCAAGATTGGGAAGCCAAAACACATTCCTTTCTTTAGGATACATGACATTGATGGTTTG
510 TT-TTTTCAAGATTAGGAAGCCAAAACACATTCC-TTCATTAGGATACATGACATTGATGCTTTG
* * *** ** *
149965 GTGTCCTAAGAAAAGCTTTTCTTTCCACTGGTTTTGATAGAATCAAAGTACGTCATCTTAAATAA
573 ATG-CCCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTC-TTTTAAATAA
* *
150030 GACAAACATTAATGCTCACACTAATCCCCATTCTTTTC-GAGATTAGGCACCATAAACATAGTCT
636 GACAAACATGAATACTCACACTAATCCCCATTCTTTTCAG-GATTAGGCACCATAAACATAGTCT
* * * * * *
150094 TCTCATTAGGATACACGATATTGATGCTTTGGTTTTGCAAGAAAGGTTTTCTTCC-CTCTATTTT
700 TCTCATTAGGATACAAGATATTAAAGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCAC-CAATTTT
* * * * * * * *
150158 TGTAAAGTCTATGTTCATGCCTCAAGTGGGACAAGCAAGGATTATAGTATTGATCTTCATTCATT
764 TGT-AAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTATAGTAATGATCTTCATTCGTT
* * * *
150223 TTCTTATTAGGTGCAATAAATACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTG
828 TTGTGATTAGGCGCAATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTG
* * * *
150288 CACA-AAAATCTTTTCTTTGCACTATTTTCCTTAAAATCAAAGTTCAT-AA
893 CA-AGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATAAAAGTTCATCCA
150337 CTTAAATAAGACAAGCATCGATTCTCATAATAGTCTCCATTC-TTTAAAGATTAGGAAGCCAAAA
1 -TTAAATAAGACAAGCATCGATTCTCATAATAGTCTCCATTCTTTTAAAGATTAGGAAGCCAAAA
* *
150401 CACATACCCTTAATTAGGATGCATGACATTGATGCTTTGGTGTCACACGAAAAGCTTTTCTTT-T
65 CACATACCCTTAATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCT
*
150465 CACCGTTTTTGATATAATCAAAGTTTGTCTCCTAAATAAGACAAACATGAATACTCAAACTAATC
130 -ACCGTTTTTGATAGAATCAAAGTTTGTCTCCTAAATAAGACAAACATGAATACTC-AACTAATC
* * * * * *
150530 CCATTTGTTTTTAGGATTAGGCACCATAAACTTAGTCTTCTCATTAGGATACACGCTGTTGATGC
193 CCA-TTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTAATTAGGATACACGATATTGATGC
* *
150595 TTTGGTTTCACAAGAAAGGCTTTCTTCCCTCCAATTTTTGTAAAGTCTATGATCGTGCCACAAAT
257 TTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTATGTTCGTGCCACAAAT
* *
150660 GACACAAGCATAGATTCTAGTAATGATCTTC-TTCAATTTGTGATTAGGCGCAATAACACATGCT
322 GAGACAAGCATAGATTATAGTAATGATCTTCATTCAATTTGTGATTAGGCGCAATAACACAT-CT
* * ** * *
150724 CCTCGTTAGAAAAAATGATATGGATGATTTTCTTTCACATAGGAATCTTTTCTTAGCCGTATTTC
386 CCTCATTAGAAAAAATGATATTGATGATTTTCTTTTGCAT-GGAATCTTTTCTTTGCCCTATTTC
* * * *
150789 CCTTAAAATCAAAGTTCA-CACTTTAAATAAGACAAGGATCGATTCTCGTAGTTGTCTCCCTTTT
450 CCTTAAAATCAAAGTTCATCTC-TTAAATAAGACAAGCATCGATTCTCGTAATTGTCTCCATTTT
* *
150853 TTTAGAGATTAGGAAGCCAAAACACATATCCTTAATTAGGATACATGACATTGATGCTTTGATGC
514 TTCA-AGATTAGGAAGCCAAAACACAT-TCCTTCATTAGGATACATGACATTGATGCTTTGATGC
* * *
150918 CACAAGAAAAGCTTTTATTTCCACCATTTTTTATAGAATCAAAGTTTATCTTTTAAATAAGACAA
577 C-CAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTTTTAAATAAGACAA
** * * * * *
150983 ACATGAATACTTGCACTAAT-CCCATTTCTTTTCAGGATTTGGCTCTATAAATATAGTCTTTTCA
641 ACATGAATACTCACACTAATCCCCA-TTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCA
* * *
151047 TCAGGATACATGATATTAAAGCTTTGGTTTCGTAAGAAAGGCTTTCTTCCTACCAATTTTTGTAA
705 TTAGGATACAAGATATTAAAGCTTTGGTTTCGCAAGAAAGGCTTTCTTCC-ACCAATTTTTGTAA
* * *
151112 GGTCTAAGTTCGTGCCTCAAATGAGACAAACATTGAATCTAGTAAT-AGTCTTCATTCGTTTTGT
769 -GTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTATAGTAATGA-TCTTCATTCGTTTTGT
* **
151176 GATTAGGCGCAATAAACACATTCTCCTCATTAGGATAAATGATGTTGATGAATTTT-TTTTGCTT
832 GATTAGGCGCAATAAACACATTCTCCTCATTAGGATAAATGATATTGATG-ATTTTCTTTTGCAA
151240 GGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATAAAAGTTCATCCA
896 GGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATAAAAGTTCATCCA
* * * * * * *
151287 TTGAATAAGGCAAGCATCGATTCTCATAATAGTCACAATTCTTTTCAAGATTGGGAAGCGAAAAC
1 TTAAATAAGACAAGCATCGATTCTCATAATAGTCTCCATTCTTTTAAAGATTAGGAAGCCAAAAC
* * * * * *
151352 ACATACCCTTCATTAGGATAAAAGATAGTGATGCTTTGGTGCCACAAGAAAAGCTTTTCTTTCTA
66 ACATACCCTTAATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCTA
* * *
151417 CC-TTTTTGATAGAATCAAAGTATGTC-CCATAAATAAGACAAATATGAATGCTCACACTAATCC
131 CCGTTTTTGATAGAATCAAAGTTTGTCTCC-TAAATAAGACAAACATGAATACTCA-ACTAATCC
**
151480 CTATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCTTTAGGATACACGATATTGATGCT
194 C-ATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTAATTAGGATACACGATATTGATGCT
** * * * * *
151545 TTGGTTTTGCAAGAAAGGCTTTTTTCCC-TCTATTTTTGTAAAATCTATGTTCGTGCCTCAAAT-
258 TTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTATGTTCGTGCCACAAATG
* * ** * * * *
151608 AGGACAAGCATGGATTATAGTAATGCTCTTCATTTGATTTGTAATTAAGCACTATAAACACATTC
323 A-GACAAGCATAGATTATAGTAATGATCTTCATTCAATTTGTGATTAGGCGCAAT-AACACA-TC
* *** * * * *
151673 TCCTTATTAGGGTAAATGATATTGATGATTTTCTTTTGCTTTGAAATCTTTTCTTTGCCTTGTTT
385 TCCTCATTAGAAAAAATGATATTGATGATTTTCTTTTGC-ATGGAATCTTTTCTTTGCCCTATTT
* * * *
151738 TCCTTAAAATAAAAGTTCATCTCTTAAATAAGACAAGCATCGATTCTCGTATTTGTCTCCAATCT
449 CCCTTAAAATCAAAGTTCATCTCTTAAATAAGACAAGCATCGATTCTCGTAATTGTCTCC-ATTT
** ** * * *
151803 TTTCAAGATTAGGAAGCCAAAACACATTCCCTTCCGTAGGATTTAAGAAATTGATGCTTT-AGGG
513 TTTCAAGATTAGGAAGCCAAAACACATT-CCTTCATTAGGATACATGACATTGATGCTTTGA-TG
* * ** **
151867 TCGCATGAAAAAATTTTCTTTCCTTCATTTTTGATAGAATCAAAGTTTGTCTTTTAAATAAGACA
576 -CCCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTTTTAAATAAGACA
* * * * *
151932 AACATGAA-ATCTCAAACCAATCCCCATTCTTTTTAGGATTAGGCACCATGAACATAGT-TCCTC
640 AACATGAATA-CTCACACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTC
* * *
151995 ATTAGGATACAAAATATTAACA-CTTCGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGC
704 ATTAGGATACAAGATATTAA-AGCTTTGGTTTCGCAAGAAAGGCTTTCTT-CCACCAATTTTTGT
* * * * *
152059 ACAGTCTAAGTTTGT-CCGTCAAATAAGTCAAACATGGATTGTAGTAATGATCTTTATTCGTTTT
767 A-AGTCTAAGTTCGTGCC-TCAAATGAGACAAACATGGATTATAGTAATGATCTTCATTCGTTTT
* * * * * * * *
152123 GTGATTATGCACAGTAAACCCATTTTCCTCTTTAGGATAAATGATAATGATGATTTTCTTTTACA
830 GTGATTAGGCGCAATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCA
** * *
152188 AGGAAATCTTTTCTTTAACCTATTTTCC-TAAAAAAAAAGTTCATCCC
895 AGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATAAAAGTTCATCCA
* * * * * * * * *
152235 CTAAATAAGATAAGCATTGATTCTCGTAACATTCTCTATTCTTTTCAAGATTGGGAAGCCAAAAC
1 TTAAATAAGACAAGCATCGATTCTCATAATAGTCTCCATTCTTTTAAAGATTAGGAAGCCAAAAC
* * **
152300 ATATACCCTTCATTAGGATACATGACATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTCTTTCTA
66 ACATACCCTTAATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCTA
* * * *** *
152365 ACATTTTTGATTGAATCAAAACGTGTCTCTTAAAT-A-AC--AC-T-AAT-C-C--C---T---A
131 CCGTTTTTGATAGAATCAAAGTTTGTCTCCTAAATAAGACAAACATGAATACTCAACTAATCCCA
* *
152414 TTGTTTTCAGGATTAGGCACCATAAACATAGTCTTCTAATTAGGATACACGATATTAATGCTTTG
196 TTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTAATTAGGATACACGATATTGATGCTTTG
**
152479 GTTTTGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTA
261 GTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTA
152524 AGCTCATTGT
Statistics
Matches: 1877, Mismatches: 259, Indels: 120
0.83 0.11 0.05
Matches are distributed among these distances:
931 86 0.05
932 16 0.01
935 1 0.00
938 1 0.00
941 1 0.00
942 1 0.00
943 3 0.00
944 1 0.00
945 1 0.00
947 7 0.00
948 314 0.17
949 718 0.38
950 379 0.20
951 296 0.16
952 52 0.03
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.36
Consensus pattern (942 bp):
TTAAATAAGACAAGCATCGATTCTCATAATAGTCTCCATTCTTTTAAAGATTAGGAAGCCAAAAC
ACATACCCTTAATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCTA
CCGTTTTTGATAGAATCAAAGTTTGTCTCCTAAATAAGACAAACATGAATACTCAACTAATCCCA
TTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTAATTAGGATACACGATATTGATGCTTTG
GTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTATGTTCGTGCCACAAATGAGA
CAAGCATAGATTATAGTAATGATCTTCATTCAATTTGTGATTAGGCGCAATAACACATCTCCTCA
TTAGAAAAAATGATATTGATGATTTTCTTTTGCATGGAATCTTTTCTTTGCCCTATTTCCCTTAA
AATCAAAGTTCATCTCTTAAATAAGACAAGCATCGATTCTCGTAATTGTCTCCATTTTTTCAAGA
TTAGGAAGCCAAAACACATTCCTTCATTAGGATACATGACATTGATGCTTTGATGCCCAAGAAAA
GCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTTTTAAATAAGACAAACATGAATAC
TCACACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACAA
GATATTAAAGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCACCAATTTTTGTAAGTCTAAGTTCGT
GCCTCAAATGAGACAAACATGGATTATAGTAATGATCTTCATTCGTTTTGTGATTAGGCGCAATA
AACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCAAGGAAATCTTTTCTTT
GCCCTATTTTCCTTAAAATAAAAGTTCATCCA
Found at i:153189 original size:159 final size:159
Alignment explanation
Indices: 152973--155144 Score: 622
Period size: 159 Copynumber: 13.7 Consensus size: 159
152963 CCTCAATTAG
* * * * *
152973 GACAAGCATTAATTCTCATAGC-AATCTCCATTCTTTTCAAGATTGGGAAACCA-AAACACATTC
1 GACAAACATGAATACTCATA-CTAATCTCCATTCTTTTCAAGATTAGG-CACCATAAACACATTC
* * * *
153036 CCTTTTTTAGGATATATGAAATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTT
64 CCTTTATTAGGATACATGATATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACTATTT
*
153101 TTGATAGAATCAAAGTTTGTCTCTTAAATAA
129 TTGATAAAATCAAAGTTTGTCTCTTAAATAA
* * * * *
153132 GATAAACATGAATACTCATACCAATCTCCATTCTTTTCAGGATTAGGCACCATAAACATAGT--C
1 GACAAACATGAATACTCATACTAATCTCCATTCTTTTCAAGATTAGGCACCATAAACACATTCCC
* * ** * *
153195 TTTAAATTAGGATACACGATATTGATGCTTTGGT-T-TCATAGCAAGGGC-TTTCTTCCCACCAA
66 TTT--ATTAGGATACATGATATTGATGCTTTGGTGTCGCA-AG-AAAAGCTTTTCTTTCCA-CTA
* * * ** * *
153257 TTTTTG-TACAATCTAAGTTCGTGGCATAAATGA
126 TTTTTGATAAAATCAAAGTTTGTCTCTTAAATAA
* * * * * * * ** * * *
153290 GAC-AAGA-G-ATTCTAATAATGATCTTCGTTCATTTT-GTGATTAGGCGCAATAAACACTTTCT
1 GACAAACATGAATACTCATACTAATCTCCATTC-TTTTCAAGATTAGGCACCATAAACACATTC-
* ** * * * * * * * * * *
153351 CC-TCAGCAAGATAAATGCTATTGATGATTT-TTATTTGCATGGAAATCTTTTCTTTGCC-CTAT
64 CCTTTATTAGGATACATGATATTGATGCTTTGGT-GTCGCAAGAAAAGCTTTTCTTT-CCACTAT
* *** * ** *
153413 TCTCCTTAAAATCGAAGTTCATTTCTTAAATAA
127 TTTTGATAAAATCAAAGTTTGTCTCTTAAATAA
* * * * * * *
153446 AACAAGCATTG-ATTCTTAGTAC-ATTCTCCATTCTTTTCAAGATTGGGAAGCCA-AAACACATT
1 GACAAACA-TGAATACTCA-TACTAATCTCCATTCTTTTCAAGATTAGGCA-CCATAAACACATT
* * * *
153508 -CCTTTCTTTAGGATACATGACATTGACGTTTTGGTGTC-CTAAGAAAAGCTTTTCTTTCCACTA
63 CCCTTT-ATTAGGATACATGATATTGATGCTTTGGTGTCGC-AAGAAAAGCTTTTCTTTCCACTA
* * * *
153571 TTTTTAATAGAATCAAAGTATGTCACTTAAATAA
126 TTTTTGATAAAATCAAAGTTTGTCTCTTAAATAA
* * * * *
153605 GACAAACATGAATGCTTACACTAATC-CCTATTCTTTTCAAGATTAGGCACCATAAACAAAGTCT
1 GACAAACATGAATACTCATACTAATCTCC-ATTCTTTTCAAGATTAGGCACCATAAACACATTC-
* * * * * * * *
153669 TCTCT-TTAGGATACACGATATTGATGCTTTGGTTTTGCAAG-AAAGGTTTTCTTCCCTCTATTT
64 CCTTTATTAGGATACATGATATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACTATTT
* * * * * **
153732 TTG-TAAAGTCTATGTTCATG-C-CTCAAGTGG
129 TTGATAAAATCAAAGTT--TGTCTCTTAAATAA
* * * * * ** ** *
153762 GACAAGCATGGATTA-T-AGTATTGATCTTCATTCATTTTC-TTATTAGGTGCAATAAACACATT
1 GACAAACAT-GAATACTCA-TACTAATCTCCATTC-TTTTCAAGATTAGGCACCATAAACACATT
* * * ** * * * *
153824 CTCC-TCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCC-CTA
63 C-CCTTTATTAGGATACATGATATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTT-CCACTA
*** **
153887 TTTTCCTTAAAATCAAAGTTCATAC-CTTAAATAA
126 TTTTTGATAAAATCAAAGTTTGT-CTCTTAAATAA
* * * * * * * *
153921 GACAAGCATCG-ATTCTTATAATAGTCTCCATTCTTTTAAAGATTAGGAAGCCA-AAACACATAC
1 GACAAACAT-GAATACTCATACTAATCTCCATTCTTTTCAAGATTAGGCA-CCATAAACACATTC
* * * * * **
153984 CCTTAATTAGGATGCATGACATTGATGCTTTGGTGTCGCACGAAAAGCTTTTCTTTTCACCGTTT
64 CCTTTATTAGGATACATGATATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACTATTT
* *
154049 TTGATACAATCAAAGTTTGTCTCCTAAATAA
129 TTGATAAAATCAAAGTTTGTCTCTTAAATAA
* * * *
154080 GACAAACATGAATACTCAAACTAATC-CCATTTTTTTTTAGGATTAGGCACCATAAACGTAGTC-
1 GACAAACATGAATACTCATACTAATCTCCA-TTCTTTTCAAGATTAGGCACCATAAAC--A--CA
* * * * * * * *
154143 TTCCC---ATTAGGATACACGATGTTGATGCTTTGGTTTCACAAGAAAGGC-TTTCTTCCCTCCA
61 TTCCCTTTATTAGGATACATGATATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCC-ACT
* ** * * ** *
154204 ATTTTTG-TAAAGTTTATGTTCGTAC-CACAAATGA
125 ATTTTTGATAAAATCAAAGTTTGT-CTCTTAAATAA
* * * * * * * ** ***
154238 CACAAGCAT-AGATTCT-AGTAATGATCTTC-TTCAATTT-GTGATTAGGCGTAATAAACACATT
1 GACAAACATGA-ATACTCA-TACTAATCTCCATTC-TTTTCAAGATTAGGCACCATAAACACATT
* * * * ** * * * * **
154299 --CTTCTCGTTA-GACAAAATGATATTGATGATTTTCTTTCACATAG-GAATCTTTTCTCAGCC-
63 CCCTT-T-ATTAGGA-TACATGATATTGATGCTTTGGTGTCGCA-AGAAAAGCTTTTCT-TTCCA
* *** **
154359 GTATTTTCCTTAAAATCAAAGTTCATACT-TTAAATAA
123 CTATTTTTGATAAAATCAAAGTTTGT-CTCTTAAATAA
* * * * * * * * *
154396 GACAAGCATCAATTCTCGTAGTAGTCTCCTTTCTTTT-AGAGATTAGGAAGCCA-AAACACATAC
1 GACAAACATGAATACTCATACTAATCTCCATTCTTTTCA-AGATTAGGCA-CCATAAACACATTC
* * * * * * *
154459 CCTTAATTATGATACATGACATTGATGCTTTGGTGCCACAAGAAAAGCTTTTATTTCCACCATTT
64 CCTTTATTAGGATACATGATATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACTATTT
* * * *
154524 TTTATAGAATCAAAATTTATCTCTTAAATAA
129 TTGATAAAATCAAAGTTTGTCTCTTAAATAA
* * * ** * * * *
154555 GACACACATGACTAGTCGCACTAATC-CCATTTCTTTTCAGGATTAGGCACTATAAACATAGT--
1 GACAAACATGAATACTCATACTAATCTCCA-TTCTTTTCAAGATTAGGCACCATAAACACATTCC
* * * * * *
154617 CTTCTCATTAGGATACATGATATTAAAGCTTTGGTTTCGTAAGAAAGGC-TTTC-TTCCTACCAA
65 CTT-T-ATTAGGATACATGATATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCC-A-CTA
** * * * * *
154680 TTTTTG-TAAGGTCTAAGTTCGTGTCTCAAATGA
126 TTTTTGATAAAATCAAAGTTTGTCTCTTAAATAA
* * ** * * *
154713 GACAAACATGGAAT-CT-AGTAATAATCTTCATTCGTTTT-GTGATTTGGCGCAATAAACACATT
1 GACAAACAT-GAATACTCA-TACTAATCTCCATTC-TTTTCAAGATTAGGCACCATAAACACATT
* * * * * * ** * *
154775 --CTTCTCATTAGGATAAATGATGTTGATGAATTT-CTTTTGCTTGGAAATCTTTTCTTTGCC-C
63 CCCTT-T-ATTAGGATACATGATATTGATG-CTTTGGTGTCGCAAGAAAAGCTTTTCTTT-CCAC
*** * ** * *
154836 TATTTTCCTTAAAATAAAAGTTCATCTATTGAATAA
124 TATTTTTGATAAAATCAAAGTTTGTCTCTTAAATAA
* * * ** * * * * * *
154872 GGCAAGCATCG-ATTCTCGCAATAGTCACTATTCTTTTAAAGA-TAGGGA--AGTGAAAACACAT
1 GACAAACAT-GAATACTCATACTAATCTCCATTCTTTTCAAGATTAGGCACCA-T--AAACACAT
* * * * * * * *
154933 ACCCTTCATTAGGATAAAAGACAGTT-ATGCTTTGGTGCCACAAGAAAAGCTTTTCTTTCCACTG
62 TCCCTTTATTAGGATACATGATA-TTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACTA
* * * *
154997 TTTTTGATAGATTCAAAGTTTGCCTCTTAAACAA
126 TTTTTGATAAAATCAAAGTTTGTCTCTTAAATAA
* * * * * * * ** *
155031 GACAAAAAAGAATATTGATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACGTAGT--C
1 GACAAACATGAATACTCATACTAATCTCCATTCTTTTCAAGATTAGGCACCATAAACACATTCCC
* * * *
155094 TTCTCATTAGGATACACGATATTGATGCTTTGGTTTCACAAGAAAGGCTTT
66 TT-T-ATTAGGATACATGATATTGATGCTTTGGTGTCGCAAGAAAAGCTTT
155145 CTGCCAACTA
Statistics
Matches: 1419, Mismatches: 470, Indels: 248
0.66 0.22 0.12
Matches are distributed among these distances:
152 1 0.00
153 1 0.00
154 3 0.00
155 59 0.04
156 39 0.03
157 158 0.11
158 332 0.23
159 785 0.55
160 22 0.02
161 13 0.01
162 5 0.00
163 1 0.00
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.36
Consensus pattern (159 bp):
GACAAACATGAATACTCATACTAATCTCCATTCTTTTCAAGATTAGGCACCATAAACACATTCCC
TTTATTAGGATACATGATATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACTATTTTT
GATAAAATCAAAGTTTGTCTCTTAAATAA
Found at i:153976 original size:475 final size:473
Alignment explanation
Indices: 152552--155146 Score: 2929
Period size: 475 Copynumber: 5.5 Consensus size: 473
152542 TAGGCATAAT
* * * * *
152552 AAACACAT-CTCCTTATTTA-GATACTTCACATTGATGCTTTGGTGCCGTAATAAAAGCTTTTCT
1 AAACACATAC-CCTTAATTAGGATACATGACATTGATGCTTTGGTGCC-AAAGAAAAGCTTTTCT
* * * * * * *
152615 TT-TAACAGTTTTTAATAGAATCAAAGTTTATCTCTTAAATAAGACAATCACGAATACTCATACC
64 TTCCACCA-TTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACT
* * * *
152679 AATCCCCATTATTTTCTGGATTAGGCACCAAAAACATAGTATTCTCATTAGGATACACGATATTG
128 AAT-CCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTG
** * * * * * *
152744 ATGCACTGGTTTCACAACAAAGG-TTTCTTCTGAC-CAATTTTTGCAAAGTTTAACTTCGTGACT
192 ATGCTTTGGTTTCACAAGAAAGGCTTTCTTC--CCTCAATTTTTGTAAAGTCTAAGTTCGTGCCT
** * * * * * *
152807 CAGTTGAG-CAAAACTTGGATTCTAGTAAGGATCTTCATTC-TCTTTGGGATTAGGCACAGTAAA
255 CAAATGAGAC-AAGCATGGATTCTAGTAATGATCTTCATTCAT-TTTGTGATTAGGCGCAATAAA
** * *
152870 CACATTCTCCTCATTAGGATAAACAATATTGATGATTTTCTTTGGCATGAAAATCGTTTCTTTGC
318 CACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGC
* * * * ** ** *
152935 CCTATTTTCCTCAAAATCAAAGTTCATACCTCAATTAGGACAAGCATTAATTCTCATAGCAATCT
383 CCTATTTTCCTTAAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTCATAATAGTCT
* * *
153000 CCATTCTTTTCAAGATTGGGAAACCA
448 CCATTCTTTTAAAGATTAGGAAGCCA
* ** * *
153026 AAACACATTCCCTTTTTTAGGATATATGAAATTGATGCTTTGGTGTCGC-AAGAAAAGCTTTTCT
1 AAACACATACCCTTAATTAGGATACATGACATTGATGCTTTGGTG-C-CAAAGAAAAGCTTTTCT
* *
153090 TTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGATAAACATGAATACTCATACCA
64 TTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTA
*
153155 ATCTCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTT-TAAATTAGGATACACGATATTG
129 ATC-CCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCT-CATTAGGATACACGATATTG
* * *
153219 ATGCTTTGGTTTCA-TAGCAAGGGCTTTCTTCCCACCAATTTTTGTACAA-TCTAAGTTCGTGGC
192 ATGCTTTGGTTTCACAAG-AAAGGCTTTCTTCCC-TCAATTTTTGTA-AAGTCTAAGTTCGT-GC
* * *
153282 AT-AAATGAGACAAG-A--GATTCTAATAATGATCTTCGTTCATTTTGTGATTAGGCGCAATAAA
253 CTCAAATGAGACAAGCATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCGCAATAAA
* ** * * *
153343 CACTTTCTCCTCAGCAAGATAAATGCTATTGATGATTTT-TATTTGCATGGAAATCTTTTCTTTG
318 CACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCT-TTTGCATGAAAATCTTTTCTTTG
* * ** * * *
153407 CCCTATTCTCCTTAAAATCGAAGTTCATTTCTTAAATAAAACAAGCATTGATTCTTAGTACAT--
382 CCCTATTTTCCTTAAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTCA-TA-ATAG
* *
153470 TCTCCATTCTTTTCAAGATTGGGAAGCCA
445 TCTCCATTCTTTTAAAGATTAGGAAGCCA
* * ** * * *
153499 AAACACATTCCTTTCTTTAGGATACATGACATTGACGTTTTGGTGTCCTAAGAAAAGCTTTTCTT
1 AAACACATACCCTTAATTAGGATACATGACATTGATGCTTTGGTG-CCAAAGAAAAGCTTTTCTT
* * * * * * *
153564 TCCACTATTTTTAATAGAATCAAAGTATGTCACTTAAATAAGACAAACATGAATGCTTACACTAA
65 TCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAA
* * *
153629 TCCCTATTCTTTTCAAGATTAGGCACCATAAACAAAGTCTTCTCTTTAGGATACACGATATTGAT
130 TCCC-ATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGAT
** * * * * *
153694 GCTTTGGTTTTGCAAGAAAGGTTTTCTTCCCTCTATTTTTGTAAAGTCTATGTTCATGCCTCAAG
194 GCTTTGGTTTCACAAGAAAGGCTTTCTTCCCTCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAA
* * * * * *
153759 TGGGACAAGCATGGATTATAGTATTGATCTTCATTCATTTTCTTATTAGGTGCAATAAACACATT
259 TGAGACAAGCATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCGCAATAAACACATT
153824 CTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATT
324 CTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATT
*
153889 TTCCTTAAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTTATAATAGTCTCCATTC
389 TTCCTTAAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTCATAATAGTCTCCATTC
153954 TTTTAAAGATTAGGAAGCCA
454 TTTTAAAGATTAGGAAGCCA
* *
153974 AAACACATACCCTTAATTAGGATGCATGACATTGATGCTTTGGTGTCGC-ACGAAAAGCTTTTCT
1 AAACACATACCCTTAATTAGGATACATGACATTGATGCTTTGGTG-C-CAAAGAAAAGCTTTTCT
* * * * *
154038 TTTCACCGTTTTTGATACAATCAAAGTTTGTCTCCTAAATAAGACAAACATGAATACTCAAACTA
64 TTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTA
* * * * *
154103 ATCCCATTTTTTTTTAGGATTAGGCACCATAAACGTAGTCTTCCCATTAGGATACACGATGTTGA
129 ATCCCA-TTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGA
* * * *
154168 TGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCTCCAATTTTTGTAAAGTTTATGTTCGTACCACA
193 TGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCT-CAATTTTTGTAAAGTCTAAGTTCGTGCCTCA
* * * *
154233 AATGACACAAGCATAGATTCTAGTAATGATCTTC-TTCAATTTGTGATTAGGCGTAATAAACACA
257 AATGAGACAAGCATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCGCAATAAACACA
* * * ** * ** *
154297 TTCTTCTCGTTA-GACAAAATGATATTGATGATTTTCTTTCACAT-AGGAATCTTTTCTCAGCCG
322 TTCTCCTCATTAGGA-TAAATGATATTGATGATTTTCTTTTGCATGA-AAATCTTTTCTTTGCCC
* * * *
154360 TATTTTCCTTAAAATCAAAGTTCATACTTTAAATAAGACAAGCATCAATTCTCGTAGTAGTCTCC
385 TATTTTCCTTAAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTCATAATAGTCTCC
* *
154425 TTTCTTTTAGAGATTAGGAAGCCA
450 ATTCTTTTAAAGATTAGGAAGCCA
* *
154449 AAACACATACCCTTAATTATGATACATGACATTGATGCTTTGGTGCCACAAGAAAAGCTTTTATT
1 AAACACATACCCTTAATTAGGATACATGACATTGATGCTTTGGTGCCA-AAGAAAAGCTTTTCTT
* * * * * * **
154514 TCCACCATTTTTTATAGAATCAAAATTTATCTCTTAAATAAGACACACATGACTAGTCGCACTAA
65 TCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAA
* * * *
154579 TCCCATTTCTTTTCAGGATTAGGCACTATAAACATAGTCTTCTCATTAGGATACATGATATTAAA
130 TCCCA-TTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGAT
** * *
154644 GCTTTGGTTTCGTAAGAAAGGCTTTCTT-CCTACCAATTTTTGTAAGGTCTAAGTTCGTGTCTCA
194 GCTTTGGTTTCACAAGAAAGGCTTTCTTCCCT--CAATTTTTGTAAAGTCTAAGTTCGTGCCTCA
* * * * *
154708 AATGAGACAAACATGGAATCTAGTAATAATCTTCATTCGTTTTGTGATTTGGCGCAATAAACACA
257 AATGAGACAAGCATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCGCAATAAACACA
* * * * *
154773 TTCTTCTCATTAGGATAAATGATGTTGATGAATTTCTTTTGCTTGGAAATCTTTTCTTTGCCCTA
322 TTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTA
* * * * ** * *
154838 TTTTCCTTAAAATAAAAGTTCAT-CTATTGAATAAGGCAAGCATCGATTCTCGCAATAGTCACTA
387 TTTTCCTTAAAATCAAAGTTCATAC-CTTAAATAAGACAAGCATCGATTCTCATAATAGTCTCCA
**
154902 TTCTTTTAAAGA-TAGGGAAGTGA
451 TTCTTTTAAAGATTA-GGAAGCCA
* * *
154925 AAACACATACCCTTCATTAGGATAAAAGACAGTT-ATGCTTTGGTGCCACAAGAAAAGCTTTTCT
1 AAACACATACCCTTAATTAGGATACATGACA-TTGATGCTTTGGTGCCA-AAGAAAAGCTTTTCT
** * * * * * * *
154989 TTCCACTGTTTTTGATAGATTCAAAGTTTGCCTCTTAAACAAGACAAAAAAGAATATTGATACTA
64 TTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTA
* *
155054 ATCCCCATTCTTTTTAGGATTAGGCACCATAAACGTAGTCTTCTCATTAGGATACACGATATTGA
129 AT-CCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGA
155119 TGCTTTGGTTTCACAAGAAAGGCTTTCT
193 TGCTTTGGTTTCACAAGAAAGGCTTTCT
155147 GCCAACTATT
Statistics
Matches: 1803, Mismatches: 273, Indels: 88
0.83 0.13 0.04
Matches are distributed among these distances:
471 5 0.00
472 33 0.02
473 360 0.20
474 36 0.02
475 933 0.52
476 422 0.23
477 14 0.01
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (473 bp):
AAACACATACCCTTAATTAGGATACATGACATTGATGCTTTGGTGCCAAAGAAAAGCTTTTCTTT
CCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAAT
CCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGC
TTTGGTTTCACAAGAAAGGCTTTCTTCCCTCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATG
AGACAAGCATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCGCAATAAACACATTCT
CCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTT
CCTTAAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTCATAATAGTCTCCATTCTT
TTAAAGATTAGGAAGCCA
Found at i:156682 original size:171 final size:171
Alignment explanation
Indices: 156483--156877 Score: 673
Period size: 171 Copynumber: 2.3 Consensus size: 171
156473 TTTTAGAGAT
*
156483 GATGAAGGTGCCAATATGCTGATTCAAGGCCAGCAATATTGGACTTAAAGATGAAGATGAGAAAA
1 GATGAAGATGCCAATATGCTGATTCAAGGCCAGCAATATTGGACTTAAAGATGAAGATGAGAAAA
*
156548 GTGATAAAGATGCCAATATGTTGATTCATGGCCAACGATATTGGGCCTACAGATGAGAAAAAGGA
66 GTGATAAAGATGCCAATATGTTGATTCATGGCCAACGATATTGGGCCTAAAGATGAGAAAAAGGA
156613 TGTCAACGTGCTGATTCAAGGCCAGCTACATTGAACTTAAA
131 TGTCAACGTGCTGATTCAAGGCCAGCTACATTGAACTTAAA
* * * *
156654 GATGAAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAAATGATGATGAGAAGA
1 GATGAAGATGCCAATATGCTGATTCAAGGCCAGCAATATTGGACTTAAAGATGAAGATGAGAAAA
*
156719 GTGATAAAGATGCCAATATGTTGATTCATGGCCAACGATATTGGGCTTAAAGATGAGAAAAAGGA
66 GTGATAAAGATGCCAATATGTTGATTCATGGCCAACGATATTGGGCCTAAAGATGAGAAAAAGGA
156784 TGTCAACGTGCTGATTCAAGGCCAGCTACATTGAACTTAAA
131 TGTCAACGTGCTGATTCAAGGCCAGCTACATTGAACTTAAA
* * *
156825 GATGGAAAATGTGCCAATATGCTGATTCAAGGCTAGCTATATTGGACTTAAAG
1 GAT-GAAGA--TGCCAATATGCTGATTCAAGGCCAGCAATATTGGACTTAAAG
156878 GTGCCAATGT
Statistics
Matches: 210, Mismatches: 11, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
171 167 0.80
172 4 0.02
174 39 0.19
ACGTcount: A:0.36, C:0.14, G:0.25, T:0.25
Consensus pattern (171 bp):
GATGAAGATGCCAATATGCTGATTCAAGGCCAGCAATATTGGACTTAAAGATGAAGATGAGAAAA
GTGATAAAGATGCCAATATGTTGATTCATGGCCAACGATATTGGGCCTAAAGATGAGAAAAAGGA
TGTCAACGTGCTGATTCAAGGCCAGCTACATTGAACTTAAA
Found at i:156934 original size:49 final size:49
Alignment explanation
Indices: 156791--157751 Score: 1257
Period size: 49 Copynumber: 19.7 Consensus size: 49
156781 GGATGTCAAC
* * *
156791 GTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAATGTGCCAAT
1 GTGCTGATTCAAGGCCAGCTATATTGGACTTAAAGAT-G--AAGGTGCCAAT
* *
156843 ATGCTGATTCAAGGCTAGCTATATTGGACTT----A--AAGGTGCCAAT
1 GTGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGCCAAT
* *
156886 GTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAAT
1 GTGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGCCAAT
* *
156935 ATGCTGATTCAAGGCCAGCGATATTGGACTT----A--AAGGTGCCAAT
1 GTGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGCCAAT
* * *
156978 GTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAAT
1 GTGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGCCAAT
* * * *
157027 ATGCTGATTCAAGGCCAACGATACTGGACTTAAAGATGAAGGTGCCAAT
1 GTGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGCCAAT
* *
157076 GTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAA--TGCCAAT
1 GTGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGCCAAT
* * * *
157123 ATGCTGATTCAAGGCCAACGATACTGGACTTAAAGATGAAGGTGCCAAT
1 GTGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGCCAAT
* *
157172 GTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGGAAAAGGTGCCAAT
1 GTGCTGATTCAAGGCCAGCTATATTGGACTTAAAGAT-G--AAGGTGCCAAT
* *
157224 ATGCTAATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGCCAAT
1 GTGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGCCAAT
* *
157273 GTGCTGAGTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAAT
1 GTGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGCCAAT
* * *
157322 GTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAAT
1 GTGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGCCAAT
* * * * *
157371 ATGCTGATTCAAGGCCAACGATACTGGACTAAAAGATGAAGGTGCCAAT
1 GTGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGCCAAT
* *
157420 GTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGGAAAAGGTGCCAAT
1 GTGCTGATTCAAGGCCAGCTATATTGGACTTAAAGAT-G--AAGGTGCCAAT
* *
157472 ATGCTAATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGCCAAT
1 GTGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGCCAAT
* *
157521 GTGCTGAGTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAAT
1 GTGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGCCAAT
* * *
157570 GTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAAT
1 GTGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGCCAAT
* *
157619 ATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAAT
1 GTGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGCCAAT
* *
157668 GTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGGAAAAGGTGCCAAT
1 GTGCTGATTCAAGGCCAGCTATATTGGACTTAAAGAT-G--AAGGTGCCAAT
* *
157720 ATGCTGATTCAAGGCCAGCTATATTGGGCTTA
1 GTGCTGATTCAAGGCCAGCTATATTGGACTTA
157752 GAGGGGTTGC
Statistics
Matches: 793, Mismatches: 93, Indels: 46
0.85 0.10 0.05
Matches are distributed among these distances:
43 75 0.09
45 1 0.00
47 43 0.05
48 1 0.00
49 514 0.65
50 3 0.00
51 2 0.00
52 154 0.19
ACGTcount: A:0.33, C:0.18, G:0.26, T:0.24
Consensus pattern (49 bp):
GTGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGCCAAT
Found at i:157476 original size:248 final size:248
Alignment explanation
Indices: 156966--157751 Score: 1432
Period size: 248 Copynumber: 3.2 Consensus size: 248
156956 TATTGGACTT
* * * * * *
156966 AAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATATGC
1 AAAGGTGCCAATATGCTAATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGCCAATGTGC
* * *
157031 TGATTCAAGGCCAACGATACTGGACTTAAAGATGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCT
66 TGAGTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCT
157096 ACATTGGACTTAAAGATG-A-ATGCCAATATGCTGATTCAAGGCCAACGATACTGGACTTAAAGA
131 ACATTGGACTTAAAGATGAAGATGCCAATATGCTGATTCAAGGCCAACGATACTGGACTTAAAGA
157159 TGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGGA
196 TGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGGA
157212 AAAGGTGCCAATATGCTAATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGCCAATGTGC
1 AAAGGTGCCAATATGCTAATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGCCAATGTGC
157277 TGAGTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCT
66 TGAGTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCT
*
157342 ACATTGGACTTAAAGATGAAGATGCCAATATGCTGATTCAAGGCCAACGATACTGGACTAAAAGA
131 ACATTGGACTTAAAGATGAAGATGCCAATATGCTGATTCAAGGCCAACGATACTGGACTTAAAGA
157407 TGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGGA
196 TGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGGA
157460 AAAGGTGCCAATATGCTAATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGCCAATGTGC
1 AAAGGTGCCAATATGCTAATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGCCAATGTGC
157525 TGAGTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCT
66 TGAGTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCT
* *
157590 ACATTGGACTTAAAGATGAAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGA
131 ACATTGGACTTAAAGATGAAGATGCCAATATGCTGATTCAAGGCCAACGATACTGGACTTAAAGA
157655 TGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGGA
196 TGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGGA
* *
157708 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGGCTTA
1 AAAGGTGCCAATATGCTAATTCAAGGCCAGCTATATTGGACTTA
157752 GAGGGGTTGC
Statistics
Matches: 523, Mismatches: 15, Indels: 2
0.97 0.03 0.00
Matches are distributed among these distances:
246 139 0.27
247 1 0.00
248 383 0.73
ACGTcount: A:0.33, C:0.18, G:0.26, T:0.23
Consensus pattern (248 bp):
AAAGGTGCCAATATGCTAATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGCCAATGTGC
TGAGTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCT
ACATTGGACTTAAAGATGAAGATGCCAATATGCTGATTCAAGGCCAACGATACTGGACTTAAAGA
TGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGGA
Found at i:157820 original size:31 final size:31
Alignment explanation
Indices: 157744--157883 Score: 171
Period size: 34 Copynumber: 4.5 Consensus size: 31
157734 CCAGCTATAT
* *
157744 TGGGCTTAGA-GGGGTTGCCACCGACTTGTG
1 TGGGCTTTGAGGGGGTTGCCACCAACTTGTG
157774 TGGGCTTT---GGGGTTGCCACCAACTTGTG
1 TGGGCTTTGAGGGGGTTGCCACCAACTTGTG
157802 TGGGCTTTGAGGGGGTTGCCACCAACTTGTG
1 TGGGCTTTGAGGGGGTTGCCACCAACTTGTG
* *
157833 TGGGCTTTAGAGAAGGGTTTGCCACCGACTTGTG
1 TGGGCTTT-GAG--GGGGTTGCCACCAACTTGTG
*
157867 TGGGCTTTAGAGAGGGT
1 TGGGCTTT-GAGGGGGT
157884 GAAAGATGTC
Statistics
Matches: 98, Mismatches: 6, Indels: 10
0.86 0.05 0.09
Matches are distributed among these distances:
28 27 0.28
30 7 0.07
31 28 0.29
32 6 0.06
34 30 0.31
ACGTcount: A:0.14, C:0.18, G:0.39, T:0.29
Consensus pattern (31 bp):
TGGGCTTTGAGGGGGTTGCCACCAACTTGTG
Found at i:157864 original size:34 final size:32
Alignment explanation
Indices: 157744--157882 Score: 175
Period size: 31 Copynumber: 4.5 Consensus size: 32
157734 CCAGCTATAT
*
157744 TGGGC-TT-AGAGGGGTTGCCACCGACTTGTG
1 TGGGCTTTGAGAGGGGTTGCCACCAACTTGTG
157774 TGGGCTTT----GGGGTTGCCACCAACTTGTG
1 TGGGCTTTGAGAGGGGTTGCCACCAACTTGTG
157802 TGGGCTTTGAG-GGGGTTGCCACCAACTTGTG
1 TGGGCTTTGAGAGGGGTTGCCACCAACTTGTG
* *
157833 TGGGCTTTAGAGAAGGGTTTGCCACCGACTTGTG
1 TGGGCTTT-GAG-AGGGGTTGCCACCAACTTGTG
157867 TGGGCTTTAGAGAGGG
1 TGGGCTTT-GAGAGGG
157883 TGAAAGATGT
Statistics
Matches: 99, Mismatches: 3, Indels: 11
0.88 0.03 0.10
Matches are distributed among these distances:
28 27 0.27
30 5 0.05
31 30 0.30
32 3 0.03
33 4 0.04
34 30 0.30
ACGTcount: A:0.14, C:0.18, G:0.39, T:0.29
Consensus pattern (32 bp):
TGGGCTTTGAGAGGGGTTGCCACCAACTTGTG
Found at i:157935 original size:33 final size:33
Alignment explanation
Indices: 157885--158139 Score: 274
Period size: 33 Copynumber: 7.7 Consensus size: 33
157875 AGAGAGGGTG
* * *
157885 AAAGA-TGTCACGAAGTTGTGGACTTAAAAGGA
1 AAAGAGTGCCACGGAGTTGTGGGCTTAAAAGGA
*
157917 ACAAG-GTGCCACAGAGTTGTGGGCTTTAAAAAGGAAAA
1 A-AAGAGTGCCACGGAGTTGTGGGC-TT-AAAAGG---A
*
157955 AAAGAGTGCCACGGAGTTGTGGGCTTAGAAGGAA
1 AAAGAGTGCCACGGAGTTGTGGGCTTAAAAGG-A
*
157989 AAAGAGTGCCACGGAGTTGTGGGCTTAGAAGGA
1 AAAGAGTGCCACGGAGTTGTGGGCTTAAAAGGA
* *
158022 AAAGAGTGCCACGTAGTTGTGGGCTTTAAAGGA
1 AAAGAGTGCCACGGAGTTGTGGGCTTAAAAGGA
* *
158055 AAAGAGTGCCACGGAGTCGTGGACTTAAAA-G-
1 AAAGAGTGCCACGGAGTTGTGGGCTTAAAAGGA
*
158086 ---G-GTGCCACGGAGTTGTGGGCTTAGAAGGA
1 AAAGAGTGCCACGGAGTTGTGGGCTTAAAAGGA
158115 AAAGAAGGTGCCACGGAGTTGTGGG
1 AAAG-A-GTGCCACGGAGTTGTGGG
158140 AGTGCCACGG
Statistics
Matches: 191, Mismatches: 16, Indels: 29
0.81 0.07 0.12
Matches are distributed among these distances:
27 22 0.12
28 2 0.01
32 3 0.02
33 74 0.39
34 36 0.19
35 24 0.13
36 5 0.03
37 5 0.03
38 20 0.10
ACGTcount: A:0.33, C:0.13, G:0.36, T:0.19
Consensus pattern (33 bp):
AAAGAGTGCCACGGAGTTGTGGGCTTAAAAGGA
Found at i:158092 original size:27 final size:27
Alignment explanation
Indices: 158054--158113 Score: 84
Period size: 27 Copynumber: 2.2 Consensus size: 27
158044 GCTTTAAAGG
*
158054 AAAAGAGTGCCACGGAGTCGTGGACTT
1 AAAAGGGTGCCACGGAGTCGTGGACTT
* *
158081 AAAAGGGTGCCACGGAGTTGTGGGCTT
1 AAAAGGGTGCCACGGAGTCGTGGACTT
*
158108 AGAAGG
1 AAAAGG
158114 AAAAGAAGGT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.28, C:0.15, G:0.38, T:0.18
Consensus pattern (27 bp):
AAAAGGGTGCCACGGAGTCGTGGACTT
Found at i:158146 original size:19 final size:19
Alignment explanation
Indices: 158122--158158 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
158112 GGAAAAGAAG
158122 GTGCCACGGAGTTGTGGGA
1 GTGCCACGGAGTTGTGGGA
158141 GTGCCACGGAGTTGTGGG
1 GTGCCACGGAGTTGTGGG
158159 CTTTAAAAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.14, C:0.16, G:0.49, T:0.22
Consensus pattern (19 bp):
GTGCCACGGAGTTGTGGGA
Found at i:158180 original size:54 final size:54
Alignment explanation
Indices: 158087--158193 Score: 146
Period size: 54 Copynumber: 2.0 Consensus size: 54
158077 ACTTAAAAGG
* * **
158087 GTGCCACGGAGTTGTGGGCTTAGAAGGAAAAGAAGGTGCCACGGAGTTGTGGGA
1 GTGCCACGGAGTTGTGGGCTTAAAAAGAAAAGAAGGTGCCAAAGAGTTGTGGGA
158141 GTGCCACGGAGTTGTGGGCTTTAAAAAG-AAA-AAGTGTGCCAAAGAGTTGTGGG
1 GTGCCACGGAGTTGTGGGC-TTAAAAAGAAAAGAAG-GTGCCAAAGAGTTGTGGG
158194 CTTTGAAAAG
Statistics
Matches: 47, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
53 3 0.06
54 38 0.81
55 6 0.13
ACGTcount: A:0.28, C:0.12, G:0.39, T:0.21
Consensus pattern (54 bp):
GTGCCACGGAGTTGTGGGCTTAAAAAGAAAAGAAGGTGCCAAAGAGTTGTGGGA
Found at i:158188 original size:35 final size:35
Alignment explanation
Indices: 158141--158342 Score: 269
Period size: 35 Copynumber: 5.6 Consensus size: 35
158131 AGTTGTGGGA
*
158141 GTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGT
1 GTGCCACAGAGTTGTGGGCTTTAAAAAGAAAAAGT
* * *
158176 GTGCCAAAGAGTTGTGGGCTTTGAAAAGGGAAAAAAGA
1 GTGCCACAGAGTTGTGGGCTTT-AAAA-AG-AAAAAGT
*
158214 GTGCCACAGAGTTGTGGGCTTTGAAAAGAAAAAGT
1 GTGCCACAGAGTTGTGGGCTTTAAAAAGAAAAAGT
* *
158249 GTGCCACAGAGTTGTGGGCTTTGAAAAGGGAAAAAGA
1 GTGCCACAGAGTTGTGGGCTTT-AAAA-AGAAAAAGT
* *
158286 GTGCCACGGAGTTGTGGGCTTTAGAAAGAAAAAGT
1 GTGCCACAGAGTTGTGGGCTTTAAAAAGAAAAAGT
*
158321 GTACCACAGAGTTGTGGGCTTT
1 GTGCCACAGAGTTGTGGGCTTT
158343 GAAGAAAAAA
Statistics
Matches: 145, Mismatches: 17, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
35 75 0.52
36 11 0.08
37 32 0.22
38 27 0.19
ACGTcount: A:0.33, C:0.11, G:0.33, T:0.22
Consensus pattern (35 bp):
GTGCCACAGAGTTGTGGGCTTTAAAAAGAAAAAGT
Found at i:158328 original size:72 final size:73
Alignment explanation
Indices: 158139--158345 Score: 355
Period size: 73 Copynumber: 2.8 Consensus size: 73
158129 GGAGTTGTGG
* *
158139 GAGTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGTGTGCCAAAGAGTTGTGGGCTTTGAAAAG
1 GAGTGCCACGGAGTTGTGGGCTTTAGAAAGAAAAAGTGTGCCACAGAGTTGTGGGCTTTGAAAAG
158204 GGAAAAAA
66 GGAAAAAA
*
158212 GAGTGCCACAGAGTTGTGGGCTTT-GAAAAGAAAAAGTGTGCCACAGAGTTGTGGGCTTTGAAAA
1 GAGTGCCACGGAGTTGTGGGCTTTAG-AAAGAAAAAGTGTGCCACAGAGTTGTGGGCTTTGAAAA
158276 GGG-AAAAA
65 GGGAAAAAA
*
158284 GAGTGCCACGGAGTTGTGGGCTTTAGAAAGAAAAAGTGTACCACAGAGTTGTGGGCTTTGAA
1 GAGTGCCACGGAGTTGTGGGCTTTAGAAAGAAAAAGTGTGCCACAGAGTTGTGGGCTTTGAA
158346 GAAAAAATGC
Statistics
Matches: 127, Mismatches: 5, Indels: 5
0.93 0.04 0.04
Matches are distributed among these distances:
72 63 0.50
73 64 0.50
ACGTcount: A:0.34, C:0.11, G:0.33, T:0.22
Consensus pattern (73 bp):
GAGTGCCACGGAGTTGTGGGCTTTAGAAAGAAAAAGTGTGCCACAGAGTTGTGGGCTTTGAAAAG
GGAAAAAA
Found at i:158384 original size:30 final size:31
Alignment explanation
Indices: 158278--158403 Score: 119
Period size: 30 Copynumber: 3.9 Consensus size: 31
158268 TTTGAAAAGG
* * *
158278 GAAAAAGAGTGCCACGGAGTTGTGGGCTTTAGAAA
1 GAAAAA-A-TGCCACTGAGTCGTGGACTTT-G-AA
* * * *
158313 GAAAAAGTGTACCACAGAGTTGTGGGCTTTGAA
1 GAAAAAATG--CCACTGAGTCGTGGACTTTGAA
158346 GAAAAAATGCCACTGAGTCGTGGACTTTG-A
1 GAAAAAATGCCACTGAGTCGTGGACTTTGAA
*
158376 GACAAAATGCCACTGAGTCGTGGACTTT
1 GAAAAAATGCCACTGAGTCGTGGACTTT
158404 AAAAAGGTAT
Statistics
Matches: 82, Mismatches: 7, Indels: 9
0.84 0.07 0.09
Matches are distributed among these distances:
30 28 0.34
31 17 0.21
33 12 0.15
34 1 0.01
35 24 0.29
ACGTcount: A:0.33, C:0.15, G:0.29, T:0.23
Consensus pattern (31 bp):
GAAAAAATGCCACTGAGTCGTGGACTTTGAA
Found at i:159452 original size:13 final size:13
Alignment explanation
Indices: 159436--159460 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
159426 TTCTTCTCTT
159436 TTTTTTTTTTTGC
1 TTTTTTTTTTTGC
159449 TTTTTTTTTTTG
1 TTTTTTTTTTTG
159461 GTGTTTGGAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.04, G:0.08, T:0.88
Consensus pattern (13 bp):
TTTTTTTTTTTGC
Found at i:166732 original size:52 final size:52
Alignment explanation
Indices: 166662--166782 Score: 224
Period size: 52 Copynumber: 2.3 Consensus size: 52
166652 GAAAATTTAT
*
166662 CTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGC
*
166714 CTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGC
166766 CTGCATGTATCGATACA
1 CTGCATGTATCGATACA
166783 AAGATCAGTG
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
52 67 1.00
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.35
Consensus pattern (52 bp):
CTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGC
Found at i:166795 original size:52 final size:51
Alignment explanation
Indices: 166662--166802 Score: 212
Period size: 52 Copynumber: 2.7 Consensus size: 51
166652 GAAAATTTAT
166662 CTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTGGGCAAATTTGC
* *
166714 CTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTGGGCAAATTTGC
*
166766 CTGCATGTATCGATACA-AAGATCAGTGTATCGATACA
1 CTGCATGTATCGATACATTA-AT-AGTGTATCGATACA
166803 ATGTATCGAT
Statistics
Matches: 82, Mismatches: 5, Indels: 4
0.90 0.05 0.04
Matches are distributed among these distances:
51 2 0.02
52 80 0.98
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.33
Consensus pattern (51 bp):
CTGCATGTATCGATACATTAATAGTGTATCGATACATCTGGGCAAATTTGC
Found at i:166809 original size:13 final size:13
Alignment explanation
Indices: 166791--166815 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
166781 CAAAGATCAG
166791 TGTATCGATACAA
1 TGTATCGATACAA
166804 TGTATCGATACA
1 TGTATCGATACA
166816 TGTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Done.