Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold292
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 327286
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
File 3 of 3
Found at i:289673 original size:29 final size:29
Alignment explanation
Indices: 289641--289734 Score: 93
Period size: 29 Copynumber: 3.2 Consensus size: 29
289631 TGTTTTACCA
289641 TATTTTATGACCATTTATGTAATTTCATG
1 TATTTTATGACCATTTATGTAATTTCATG
* ** *
289670 TATTTTAGTGTCTTTTTA-GTAATTT-ATCA
1 TATTTTA-TGACCATTTATGTAATTTCAT-G
* *
289699 TATTTTAAGACCATTTATGGAATTTCATG
1 TATTTTATGACCATTTATGTAATTTCATG
*
289728 CATTTTA
1 TATTTTA
289735 GGATCGTTTT
Statistics
Matches: 50, Mismatches: 11, Indels: 8
0.72 0.16 0.12
Matches are distributed among these distances:
28 8 0.16
29 33 0.66
30 9 0.18
ACGTcount: A:0.28, C:0.10, G:0.11, T:0.52
Consensus pattern (29 bp):
TATTTTATGACCATTTATGTAATTTCATG
Found at i:289811 original size:58 final size:57
Alignment explanation
Indices: 289622--289879 Score: 192
Period size: 58 Copynumber: 4.5 Consensus size: 57
289612 TACTTTAGGG
** * * * * * * * **
289622 TCATTTTAGTGTTTTACCATATTTTATGACCATTTATGTAATTTCATGTATTTTAGTG
1 TCATTTTAGTAATTTGCCATGTTTTAAGACTATTTATGCAATTTAATGCATTTT-GCA
* ** * * * * *
289680 TCTTTTTAGTAATTTATCATATTTTAAGACCATTTATGGAATTTCATGCATTTTAGGA
1 TCATTTTAGTAATTTGCCATGTTTTAAGACTATTTATGCAATTTAATGCATTTT-GCA
* * * *
289738 TCGTTTTAATAATTTGCCATGTTTTAAGACTATTTATGTAATTTTATGCATTTATGCA
1 TCATTTTAGTAATTTGCCATGTTTTAAGACTATTTATGCAATTTAATGCATTT-TGCA
* * * * * * *
289796 TCATGTTAGTCATTTGCCATGATTTAGGACTCTTTATACAATTTAATGCATTTTTGCC
1 TCATTTTAGTAATTTGCCATGTTTTAAGACTATTTATGCAATTTAATGCA-TTTTGCA
* *
289854 TTATTTTAGTAATTTGCCTTGTTTTA
1 TCATTTTAGTAATTTGCCATGTTTTA
289880 TGGACTTTTA
Statistics
Matches: 164, Mismatches: 34, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
58 160 0.98
59 4 0.02
ACGTcount: A:0.26, C:0.12, G:0.12, T:0.50
Consensus pattern (57 bp):
TCATTTTAGTAATTTGCCATGTTTTAAGACTATTTATGCAATTTAATGCATTTTGCA
Found at i:297719 original size:20 final size:20
Alignment explanation
Indices: 297694--297747 Score: 108
Period size: 20 Copynumber: 2.7 Consensus size: 20
297684 ATAACTCAAA
297694 GTATCGATACATAGGTATTT
1 GTATCGATACATAGGTATTT
297714 GTATCGATACATAGGTATTT
1 GTATCGATACATAGGTATTT
297734 GTATCGATACATAG
1 GTATCGATACATAG
297748 AAGGTTGACT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.31, C:0.11, G:0.20, T:0.37
Consensus pattern (20 bp):
GTATCGATACATAGGTATTT
Found at i:297971 original size:20 final size:20
Alignment explanation
Indices: 297920--297971 Score: 50
Period size: 20 Copynumber: 2.6 Consensus size: 20
297910 ACTACTGTTT
* **
297920 GTATCGATACATAGTACATT
1 GTATCGATACATAGTAAAAA
* * *
297940 TTATCAACACATAGTAAAAA
1 GTATCGATACATAGTAAAAA
297960 GTATCGATACAT
1 GTATCGATACAT
297972 TATGCCTAAC
Statistics
Matches: 23, Mismatches: 9, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.42, C:0.15, G:0.12, T:0.31
Consensus pattern (20 bp):
GTATCGATACATAGTAAAAA
Found at i:301397 original size:36 final size:36
Alignment explanation
Indices: 301350--301421 Score: 135
Period size: 36 Copynumber: 2.0 Consensus size: 36
301340 ATCAAGCATT
*
301350 TTCTACTATAGACTGTATGTCAAGTTTTGTATAAAC
1 TTCTACTATAGACTATATGTCAAGTTTTGTATAAAC
301386 TTCTACTATAGACTATATGTCAAGTTTTGTATAAAC
1 TTCTACTATAGACTATATGTCAAGTTTTGTATAAAC
301422 CTAACATAAG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.32, C:0.14, G:0.12, T:0.42
Consensus pattern (36 bp):
TTCTACTATAGACTATATGTCAAGTTTTGTATAAAC
Found at i:312174 original size:20 final size:20
Alignment explanation
Indices: 312144--312196 Score: 63
Period size: 21 Copynumber: 2.6 Consensus size: 20
312134 TTACAACTAA
312144 AAAAATAAATTTAATTATAAC
1 AAAAAT-AATTTAATTATAAC
*
312165 AAAAATAATTTTAATTATTAC
1 AAAAATAA-TTTAATTATAAC
*
312186 -CAAATAATTTA
1 AAAAATAATTTA
312197 TATTTTCATT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
19 4 0.14
20 8 0.28
21 17 0.59
ACGTcount: A:0.57, C:0.06, G:0.00, T:0.38
Consensus pattern (20 bp):
AAAAATAATTTAATTATAAC
Found at i:312212 original size:39 final size:39
Alignment explanation
Indices: 312169--312247 Score: 149
Period size: 39 Copynumber: 2.0 Consensus size: 39
312159 TATAACAAAA
*
312169 ATAATTTTAATTATTACCAAATAATTTATATTTTCATTT
1 ATAATTTTAATCATTACCAAATAATTTATATTTTCATTT
312208 ATAATTTTAATCATTACCAAATAATTTATATTTTCATTT
1 ATAATTTTAATCATTACCAAATAATTTATATTTTCATTT
312247 A
1 A
312248 AAATACCAAT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.39, C:0.09, G:0.00, T:0.52
Consensus pattern (39 bp):
ATAATTTTAATCATTACCAAATAATTTATATTTTCATTT
Found at i:312231 original size:20 final size:19
Alignment explanation
Indices: 312167--312234 Score: 59
Period size: 20 Copynumber: 3.5 Consensus size: 19
312157 ATTATAACAA
312167 AAATAATTTTAATTATTACC
1 AAATAATTTTAA-TATTACC
**
312187 AAATAA-TTT-ATATTTTC
1 AAATAATTTTAATATTACC
*
312204 ATTTATAATTTTAATCATTACC
1 A--AATAATTTTAAT-ATTACC
312226 AAATAATTT
1 AAATAATTT
312235 ATATTTTCAT
Statistics
Matches: 37, Mismatches: 6, Indels: 10
0.70 0.11 0.19
Matches are distributed among these distances:
17 6 0.16
18 1 0.03
19 7 0.19
20 16 0.43
21 2 0.05
22 5 0.14
ACGTcount: A:0.43, C:0.09, G:0.00, T:0.49
Consensus pattern (19 bp):
AAATAATTTTAATATTACC
Found at i:312477 original size:146 final size:144
Alignment explanation
Indices: 312299--312571 Score: 354
Period size: 146 Copynumber: 1.9 Consensus size: 144
312289 TAATCAAAAT
312299 AAAATTAAACTAATTTTACAAATAAAAATAAATTATACTTCAAAAAAATTT-AACTCT-TATAAT
1 AAAATTAAACTAATTTTACAAATAAAAATAAATTATA-TTCAAAAAAATTTAAACT-TATATAAT
* * * *
312362 CACCT-TAAAAAACAAATTTAAAACTTGTACAAAGAAAAATAAATTATATATTAAAATTTTAAAC
64 CACATCTAAAAAACAAATTT-AAACTTATACAAAGAAAAATAAATAATATATTAAAAATTTAAAC
312426 TAATATAATAAAATCAA
128 TAATATAATAAAATCAA
* * **
312443 AAAATTAAATTAAATTTTTATAAATAAAAATAAATTATATTTTAAAAAATTTAAACTTATATAAT
1 AAAATTAAACT-AA-TTTTACAAATAAAAATAAATTATATTCAAAAAAATTTAAACTTATATAAT
* * * * * *
312508 CATATCTAAAAAATAAATTTAAATTTATATAAATAAAAATAAATAATATCTTAAAAATTTAAAC
64 CACATCTAAAAAACAAATTTAAACTTATACAAAGAAAAATAAATAATATATTAAAAATTTAAAC
312572 CCTTGTAATC
Statistics
Matches: 110, Mismatches: 14, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
144 10 0.09
145 14 0.13
146 73 0.66
147 13 0.12
ACGTcount: A:0.58, C:0.07, G:0.01, T:0.35
Consensus pattern (144 bp):
AAAATTAAACTAATTTTACAAATAAAAATAAATTATATTCAAAAAAATTTAAACTTATATAATCA
CATCTAAAAAACAAATTTAAACTTATACAAAGAAAAATAAATAATATATTAAAAATTTAAACTAA
TATAATAAAATCAA
Found at i:312492 original size:25 final size:26
Alignment explanation
Indices: 312442--312492 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 26
312432 AATAAAATCA
* *
312442 AAAAATTAAATTAAATTTTTATAAAT
1 AAAAATTAAATTAAATTTTAAAAAAT
*
312468 AAAAA-TAAATTATATTTTAAAAAAT
1 AAAAATTAAATTAAATTTTAAAAAAT
312493 TTAAACTTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
25 17 0.77
26 5 0.23
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (26 bp):
AAAAATTAAATTAAATTTTAAAAAAT
Found at i:312499 original size:73 final size:72
Alignment explanation
Indices: 312294--312571 Score: 263
Period size: 74 Copynumber: 3.8 Consensus size: 72
312284 TAATGTAATC
* ** **
312294 AAAATAAAATTAAACTAATTTTACAAATAAAAATAAATTATACTTCAAAAAAATTT-AACTCTTA
1 AAAATAAATTTAAA-T--TTTTACAAATAAAAATAAATTATA-TT-TTAAAAATTTAAACTAATA
** *
312358 TAATCACCTTAA
61 TAATCAAATCAA
* * * * * *
312370 AAAACAAATTTAAAACTTGTACAAAGAAAAATAAATTATATATTAAAATTTTAAACTAATATAAT
1 AAAATAAATTT-AAATTTTTACAAATAAAAATAAATTATATTTTAAAAATTTAAACTAATATAAT
*
312435 AAAATCAA
65 CAAATCAA
* *
312443 AAAATTAAA-TTAAATTTTTATAAATAAAAATAAATTATATTTTAAAAAATTTAAACTTATATAA
1 AAAA-TAAATTTAAATTTTTACAAATAAAAATAAATTATATTTT-AAAAATTTAAACTAATATAA
*
312507 TCATATCTAA
64 TCAAATC-AA
* * * *
312517 AAAATAAATTTAAATTTATATAAATAAAAATAAATAATATCTTAAAAATTTAAAC
1 AAAATAAATTTAAATTTTTACAAATAAAAATAAATTATATTTTAAAAATTTAAAC
312572 CCTTGTAATC
Statistics
Matches: 168, Mismatches: 28, Indels: 15
0.80 0.13 0.07
Matches are distributed among these distances:
72 34 0.20
73 60 0.36
74 62 0.37
76 9 0.05
77 3 0.02
ACGTcount: A:0.58, C:0.07, G:0.01, T:0.35
Consensus pattern (72 bp):
AAAATAAATTTAAATTTTTACAAATAAAAATAAATTATATTTTAAAAATTTAAACTAATATAATC
AAATCAA
Found at i:312581 original size:73 final size:73
Alignment explanation
Indices: 312310--312583 Score: 249
Period size: 73 Copynumber: 3.8 Consensus size: 73
312300 AAATTAAACT
* **
312310 AATTTTACAAATAAAAATAAATTATA-CTTCAAAAAAATTT-AACTCTTATAATCACCT-TAAAA
1 AATTTTACAAATAAAAATAAATTATATCTT--AAAAAATTTAAACCCTTATAATCAAATCTAAAA
*
312372 AACAAATTTAA
64 AATAAATTT-A
* * * * *** *
312383 AACTTGTACAAAGAAAAATAAATTATATATT-AAAATTTTAAACTAATATAATAAAATC-AAAAA
1 AA-TTTTACAAATAAAAATAAATTATATCTTAAAAAATTTAAACCCTTATAATCAAATCTAAAAA
312446 ATTAAA-TTA
65 A-TAAATTTA
* * * *
312455 AATTTTTATAAATAAAAATAAATTATATTTTAAAAAATTTAAA-CTTATATAATCATATCTAAAA
1 AA-TTTTACAAATAAAAATAAATTATATCTTAAAAAATTTAAACCCT-TATAATCAAATCTAAAA
312519 AATAAATTTA
64 AATAAATTTA
* * *
312529 AATTTATATAAATAAAAATAAATAATATCTT-AAAAATTTAAACCCTTGTAATCAA
1 AATTT-TACAAATAAAAATAAATTATATCTTAAAAAATTTAAACCCTTATAATCAA
312584 CCGAAAAACA
Statistics
Matches: 164, Mismatches: 26, Indels: 22
0.77 0.12 0.10
Matches are distributed among these distances:
72 34 0.21
73 67 0.41
74 61 0.37
75 2 0.01
ACGTcount: A:0.56, C:0.08, G:0.01, T:0.35
Consensus pattern (73 bp):
AATTTTACAAATAAAAATAAATTATATCTTAAAAAATTTAAACCCTTATAATCAAATCTAAAAAA
TAAATTTA
Found at i:315562 original size:7 final size:7
Alignment explanation
Indices: 315546--315586 Score: 57
Period size: 7 Copynumber: 5.7 Consensus size: 7
315536 TATTTAAAAA
315546 TTAT-TT
1 TTATATT
315552 TTATATT
1 TTATATT
315559 TTATATT
1 TTATATT
315566 TTATATT
1 TTATATT
315573 TATATAATT
1 T-TAT-ATT
315582 TTATA
1 TTATA
315587 GTTAAATTTA
Statistics
Matches: 32, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
6 4 0.12
7 18 0.56
8 6 0.19
9 4 0.12
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (7 bp):
TTATATT
Found at i:315595 original size:22 final size:22
Alignment explanation
Indices: 315548--315596 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 22
315538 TTTAAAAATT
* * *
315548 ATTTTTATATTTTATATTTTAT
1 ATTTATATATTTTATATGTTAA
315570 ATTTATATAATTTTATA-GTTAA
1 ATTTATAT-ATTTTATATGTTAA
315592 ATTTA
1 ATTTA
315597 AGTAAAAATA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
22 15 0.65
23 8 0.35
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (22 bp):
ATTTATATATTTTATATGTTAA
Found at i:316234 original size:25 final size:27
Alignment explanation
Indices: 316183--316257 Score: 82
Period size: 27 Copynumber: 2.8 Consensus size: 27
316173 ATAATTTTTA
* * *
316183 ATATTTATATTTATAATTAATATTTATT
1 ATATATATAATTATAA-AAATATTTATT
*
316211 ATA-AT-TAATTATAACAATATTTATT
1 ATATATATAATTATAAAAATATTTATT
*
316236 ATATTTATAATTATAAAAATAT
1 ATATATATAATTATAAAAATAT
316258 AACATAATAA
Statistics
Matches: 40, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
25 13 0.32
26 9 0.22
27 15 0.38
28 3 0.08
ACGTcount: A:0.47, C:0.01, G:0.00, T:0.52
Consensus pattern (27 bp):
ATATATATAATTATAAAAATATTTATT
Found at i:316773 original size:25 final size:25
Alignment explanation
Indices: 316716--316773 Score: 61
Period size: 25 Copynumber: 2.4 Consensus size: 25
316706 ATTAATTTTA
316716 AATAT-AATATAATTATATAAAAAT
1 AATATAAATATAATTATATAAAAAT
316740 AAT-TAAAATATAA-TATA-ACATAAAT
1 AATAT-AAATATAATTATATA-A-AAAT
316765 AATATAAAT
1 AATATAAAT
316774 TTAAAAATAA
Statistics
Matches: 29, Mismatches: 0, Indels: 9
0.76 0.00 0.24
Matches are distributed among these distances:
23 2 0.07
24 8 0.28
25 18 0.62
26 1 0.03
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (25 bp):
AATATAAATATAATTATATAAAAAT
Found at i:316791 original size:20 final size:21
Alignment explanation
Indices: 316753--316810 Score: 75
Period size: 20 Copynumber: 2.8 Consensus size: 21
316743 TAAAATATAA
*
316753 TATAACATAAATAATATAAATT
1 TATAAAATAAAT-ATATAAATT
316775 TA-AAAATAAATATATAAATT
1 TATAAAATAAATATATAAATT
*
316795 TATTAAA-AAATATATA
1 TATAAAATAAATATATA
316811 GCATGCATAA
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
20 20 0.61
21 11 0.33
22 2 0.06
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (21 bp):
TATAAAATAAATATATAAATT
Found at i:317405 original size:2 final size:2
Alignment explanation
Indices: 317398--317431 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
317388 TATTAACTTG
317398 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -A TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
317432 GCTGATTTCG
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 30 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:319499 original size:41 final size:40
Alignment explanation
Indices: 319434--319540 Score: 130
Period size: 41 Copynumber: 2.7 Consensus size: 40
319424 ACATATTTAT
* * **
319434 CCTAAAGTGATAATTACTTGTCTTAAAAGCATAAGTCTTA
1 CCTAAAGTGATAATTACATATCTTAAAAGCATAAAACTTA
* *
319474 CCCTAAAGTGATAGTTACATATCTTAACAGCATAAAACTTA
1 -CCTAAAGTGATAATTACATATCTTAAAAGCATAAAACTTA
319515 CC---AGTGATAATTACATATCTTAAAAG
1 CCTAAAGTGATAATTACATATCTTAAAAG
319541 AAATAGAACT
Statistics
Matches: 58, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
37 22 0.38
40 2 0.03
41 34 0.59
ACGTcount: A:0.40, C:0.17, G:0.11, T:0.32
Consensus pattern (40 bp):
CCTAAAGTGATAATTACATATCTTAAAAGCATAAAACTTA
Found at i:321798 original size:2 final size:2
Alignment explanation
Indices: 321791--321835 Score: 83
Period size: 2 Copynumber: 23.0 Consensus size: 2
321781 AGAGTCTATA
321791 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG -G AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
321832 AG AG
1 AG AG
321836 TAAGAGGAGA
Statistics
Matches: 42, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.02
2 41 0.98
ACGTcount: A:0.49, C:0.00, G:0.51, T:0.00
Consensus pattern (2 bp):
AG
Found at i:322694 original size:21 final size:22
Alignment explanation
Indices: 322661--322707 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 22
322651 TCTTGTAATA
* *
322661 TTTTTTCGATTTTACTTTATTT
1 TTTTTTAGATTTTACATTATTT
*
322683 TTTTTTAG-TTTTGCATTATTT
1 TTTTTTAGATTTTACATTATTT
322704 TTTT
1 TTTT
322708 CGTTAAGTCT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 15 0.68
22 7 0.32
ACGTcount: A:0.13, C:0.06, G:0.06, T:0.74
Consensus pattern (22 bp):
TTTTTTAGATTTTACATTATTT
Found at i:323907 original size:14 final size:14
Alignment explanation
Indices: 323890--323916 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
323880 AGTTAATGAT
323890 ATAAAATATATTTC
1 ATAAAATATATTTC
323904 ATAAAATATATTT
1 ATAAAATATATTT
323917 AAAAAATAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.52, C:0.04, G:0.00, T:0.44
Consensus pattern (14 bp):
ATAAAATATATTTC
Found at i:323924 original size:13 final size:14
Alignment explanation
Indices: 323892--323924 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
323882 TTAATGATAT
*
323892 AAAATATATTTCAT
1 AAAATATATTTCAA
323906 AAAATATATTT-AA
1 AAAATATATTTCAA
323919 AAAATA
1 AAAATA
323925 AATAATAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 7 0.39
14 11 0.61
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.36
Consensus pattern (14 bp):
AAAATATATTTCAA
Found at i:325523 original size:16 final size:16
Alignment explanation
Indices: 325502--325534 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
325492 TCCTTTAATT
325502 AAAATATTATCCAAAC
1 AAAATATTATCCAAAC
325518 AAAATATTATCCAAAC
1 AAAATATTATCCAAAC
325534 A
1 A
325535 GGGGAGGCTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.58, C:0.18, G:0.00, T:0.24
Consensus pattern (16 bp):
AAAATATTATCCAAAC
Done.