Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold293
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1704560
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
File 1 of 12
Found at i:1270 original size:17 final size:17
Alignment explanation
Indices: 1229--1274 Score: 53
Period size: 15 Copynumber: 2.9 Consensus size: 17
1219 AATGTTGGTG
*
1229 TTTAT-TTTTTAA-AAT
1 TTTATATTTTTAATTAT
*
1244 TTTTTA-TTTTAATTAT
1 TTTATATTTTTAATTAT
1260 TTTATATTTTTAATT
1 TTTATATTTTTAATT
1275 TCAAATACAC
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
15 10 0.40
16 7 0.28
17 8 0.32
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (17 bp):
TTTATATTTTTAATTAT
Found at i:2025 original size:21 final size:22
Alignment explanation
Indices: 1990--2060 Score: 78
Period size: 21 Copynumber: 3.3 Consensus size: 22
1980 GAATATAGAT
1990 ATATATTTTATAAAAATATATTTA
1 ATAT-TTTTA-AAAAATATATTTA
2014 AT-TTTTTAAAAAATAT-TTTA
1 ATATTTTTAAAAAATATATTTA
* *
2034 ATATATTTAAAAAAT-TATAT-
1 ATATTTTTAAAAAATATATTTA
2054 ATATTTT
1 ATATTTT
2061 ATTTTATATA
Statistics
Matches: 42, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
20 13 0.31
21 21 0.50
22 5 0.12
23 1 0.02
24 2 0.05
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (22 bp):
ATATTTTTAAAAAATATATTTA
Found at i:2670 original size:27 final size:27
Alignment explanation
Indices: 2618--2714 Score: 83
Period size: 27 Copynumber: 3.7 Consensus size: 27
2608 TAGCTACCAA
* *
2618 TTTTGACAAACAATAA-G--CCATAAT
1 TTTTGACAAACAAAAAGGAACCATCAT
* *
2642 TTTTTAGAAACAAAAAGGAACCATCAT
1 TTTTGACAAACAAAAAGGAACCATCAT
* * * *
2669 TTTTGACAAATACAAAGTAACCACCAT
1 TTTTGACAAACAAAAAGGAACCATCAT
*
2696 TTTTGACAAATACAAAAGG
1 TTTTGACAAACA-AAAAGG
2715 TGGCTTTTGT
Statistics
Matches: 57, Mismatches: 12, Indels: 4
0.78 0.16 0.05
Matches are distributed among these distances:
24 13 0.23
25 1 0.02
27 39 0.68
28 4 0.07
ACGTcount: A:0.46, C:0.16, G:0.10, T:0.27
Consensus pattern (27 bp):
TTTTGACAAACAAAAAGGAACCATCAT
Found at i:4591 original size:24 final size:24
Alignment explanation
Indices: 4555--4609 Score: 60
Period size: 24 Copynumber: 2.3 Consensus size: 24
4545 CCATTTTACA
*
4555 ATAAA-AATTAGCCACCAA-TTTTG
1 ATAAATAATAAGCCA-CAATTTTTG
*
4578 ATAAATAATAAGCCATAATTTTTG
1 ATAAATAATAAGCCACAATTTTTG
*
4602 ACAAATAA
1 ATAAATAA
4610 AAATGAATCA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
23 7 0.26
24 20 0.74
ACGTcount: A:0.49, C:0.13, G:0.07, T:0.31
Consensus pattern (24 bp):
ATAAATAATAAGCCACAATTTTTG
Found at i:4610 original size:28 final size:27
Alignment explanation
Indices: 4584--4687 Score: 122
Period size: 27 Copynumber: 3.8 Consensus size: 27
4574 TTTGATAAAT
*
4584 AATAAGCCATAATTTTTGACAAATA-AA
1 AATAA-CCACAATTTTTGACAAATATAA
*
4611 AATGAATCATC-ATTTTTGACAAATATAA
1 AAT-AACCA-CAATTTTTGACAAATATAA
*
4639 AGTAACCACAATTTTTGACAAATATAA
1 AATAACCACAATTTTTGACAAATATAA
* *
4666 AGTAACCACCATTTTTGACAAA
1 AATAACCACAATTTTTGACAAA
4688 CACAAAAGGT
Statistics
Matches: 68, Mismatches: 5, Indels: 8
0.84 0.06 0.10
Matches are distributed among these distances:
26 1 0.01
27 61 0.90
28 6 0.09
ACGTcount: A:0.47, C:0.14, G:0.08, T:0.31
Consensus pattern (27 bp):
AATAACCACAATTTTTGACAAATATAA
Found at i:4627 original size:27 final size:26
Alignment explanation
Indices: 4595--4687 Score: 125
Period size: 27 Copynumber: 3.5 Consensus size: 26
4585 ATAAGCCATA
* *
4595 ATTTTTGACAAATA-AAAATGAATCATC
1 ATTTTTGACAAATATAAAGT-AACCA-C
4622 ATTTTTGACAAATATAAAGTAACCAC
1 ATTTTTGACAAATATAAAGTAACCAC
4648 AATTTTTGACAAATATAAAGTAACCACC
1 -ATTTTTGACAAATATAAAGTAACCA-C
4676 ATTTTTGACAAA
1 ATTTTTGACAAA
4688 CACAAAAGGT
Statistics
Matches: 61, Mismatches: 2, Indels: 6
0.88 0.03 0.09
Matches are distributed among these distances:
26 1 0.02
27 55 0.90
28 5 0.08
ACGTcount: A:0.46, C:0.14, G:0.08, T:0.32
Consensus pattern (26 bp):
ATTTTTGACAAATATAAAGTAACCAC
Found at i:5180 original size:16 final size:16
Alignment explanation
Indices: 5161--5201 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
5151 TATATTTTAT
5161 TTATTTT-GAATTTAAA
1 TTATTTTAG-ATTTAAA
5177 TTATTTTAGATTTAAA
1 TTATTTTAGATTTAAA
*
5193 TAATTTTAG
1 TTATTTTAG
5202 TTTGATATTA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 22 0.96
17 1 0.04
ACGTcount: A:0.37, C:0.00, G:0.07, T:0.56
Consensus pattern (16 bp):
TTATTTTAGATTTAAA
Found at i:5249 original size:30 final size:30
Alignment explanation
Indices: 5208--5277 Score: 79
Period size: 30 Copynumber: 2.3 Consensus size: 30
5198 TTAGTTTGAT
* * *
5208 ATTAAAATTATTGAGTTT-GAATTATTTTAA
1 ATTAAATTTATTAAGTTTAAAATTA-TTTAA
* *
5238 ATTTAATTTATTAATTTTAAAATTATTTAA
1 ATTAAATTTATTAAGTTTAAAATTATTTAA
5268 ATTAAATTTA
1 ATTAAATTTA
5278 AATATTTATT
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
30 28 0.85
31 5 0.15
ACGTcount: A:0.43, C:0.00, G:0.04, T:0.53
Consensus pattern (30 bp):
ATTAAATTTATTAAGTTTAAAATTATTTAA
Found at i:9224 original size:13 final size:14
Alignment explanation
Indices: 9196--9228 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
9186 ATTTTGCATT
9196 TTTTTATATGTTTAA
1 TTTTTATA-GTTTAA
9211 TTTTTATA-TTTAA
1 TTTTTATAGTTTAA
9224 TTTTT
1 TTTTT
9229 TCTTAAATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 10 0.56
15 8 0.44
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.73
Consensus pattern (14 bp):
TTTTTATAGTTTAA
Found at i:13430 original size:162 final size:163
Alignment explanation
Indices: 13157--13464 Score: 438
Period size: 162 Copynumber: 1.9 Consensus size: 163
13147 CTCTTGGAGC
* * ** *
13157 ATTGGAAAAATAAAATTAGTTTGATCATCGAATCTAATTCGTTGATTGTTGTTTCTTCAACTGAC
1 ATTGAAAAAATAAAATTAGTTTAATCATCGAATCTAATTAATTGATTATTGTTTCTTCAACTGAC
* * ** * * *
13222 CTAATTCTCGCCACTATTATCTTGGAGTAGTCTCTCTTTCTTACTTTTATATTTTAATTTGGCCA
66 CTAATACTCACCACTATTATCTTAAAATAGTCTCTCTTTCTTACTTTTATACTTTAATTTGACCA
13287 ATTCCAAT-CTGATTGTTATAACTTTAAAATCT
131 ATTCCAATCCTGATTGTTATAACTTTAAAATCT
* * *
13319 ATTGAAAAAATAAAGTTAGTTTAATCATTGAATCTAATTAATTGATTATTGTTTCTTCAATTGAC
1 ATTGAAAAAATAAAATTAGTTTAATCATCGAATCTAATTAATTGATTATTGTTTCTTCAACTGAC
* * * *
13384 CTAATACTCACCACTATTATTTTAAAATGGTCTCTCTTTTTTACTTTTATACTTTAATTTGATCA
66 CTAATACTCACCACTATTATCTTAAAATAGTCTCTCTTTCTTACTTTTATACTTTAATTTGACCA
13449 ATTCCAATCCTGATTG
131 ATTCCAATCCTGATTG
13465 CTCTAATTTT
Statistics
Matches: 126, Mismatches: 19, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
162 119 0.94
163 7 0.06
ACGTcount: A:0.30, C:0.16, G:0.10, T:0.44
Consensus pattern (163 bp):
ATTGAAAAAATAAAATTAGTTTAATCATCGAATCTAATTAATTGATTATTGTTTCTTCAACTGAC
CTAATACTCACCACTATTATCTTAAAATAGTCTCTCTTTCTTACTTTTATACTTTAATTTGACCA
ATTCCAATCCTGATTGTTATAACTTTAAAATCT
Found at i:16043 original size:2 final size:2
Alignment explanation
Indices: 16036--16067 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
16026 TACATCTTAG
16036 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
16068 TTTCATGTCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:19256 original size:20 final size:20
Alignment explanation
Indices: 19231--19268 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
19221 TACTGCTAAG
19231 GAAATGCACCGATACATTAT
1 GAAATGCACCGATACATTAT
* *
19251 GAAATGTATCGATACATT
1 GAAATGCACCGATACATT
19269 GTATCGATAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.39, C:0.16, G:0.16, T:0.29
Consensus pattern (20 bp):
GAAATGCACCGATACATTAT
Found at i:19273 original size:13 final size:13
Alignment explanation
Indices: 19255--19280 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
19245 CATTATGAAA
19255 TGTATCGATACAT
1 TGTATCGATACAT
19268 TGTATCGATACAT
1 TGTATCGATACAT
19281 GGATCTTTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:24391 original size:42 final size:42
Alignment explanation
Indices: 24337--24417 Score: 162
Period size: 42 Copynumber: 1.9 Consensus size: 42
24327 TAACAATTAC
24337 AGAAGTGTGGATACTCTTCTTAAACTGCTTAGTCACCCAATT
1 AGAAGTGTGGATACTCTTCTTAAACTGCTTAGTCACCCAATT
24379 AGAAGTGTGGATACTCTTCTTAAACTGCTTAGTCACCCA
1 AGAAGTGTGGATACTCTTCTTAAACTGCTTAGTCACCCA
24418 GTCAGCTGTT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 39 1.00
ACGTcount: A:0.28, C:0.22, G:0.17, T:0.32
Consensus pattern (42 bp):
AGAAGTGTGGATACTCTTCTTAAACTGCTTAGTCACCCAATT
Found at i:26183 original size:19 final size:20
Alignment explanation
Indices: 26161--26259 Score: 73
Period size: 19 Copynumber: 4.9 Consensus size: 20
26151 ATATAAACAT
26161 AATATTA-AAAAATAAATAA
1 AATATTATAAAAATAAATAA
26180 AATATAATATAAAATATAAAATAA
1 AATAT--TATAAAA-AT-AAATAA
* *
26204 AAAATTATAAATAT-AATATA
1 AATATTATAAAAATAAATA-A
* *
26224 AATA-TATAAATAT-ATTAA
1 AATATTATAAAAATAAATAA
26242 AAT-TTATAAAATATAAAT
1 AATATTATAAAA-ATAAAT
26260 TATTAATATG
Statistics
Matches: 65, Mismatches: 6, Indels: 17
0.74 0.07 0.19
Matches are distributed among these distances:
18 10 0.15
19 23 0.35
20 6 0.09
21 4 0.06
22 10 0.15
23 2 0.03
24 10 0.15
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (20 bp):
AATATTATAAAAATAAATAA
Found at i:26186 original size:7 final size:7
Alignment explanation
Indices: 26176--26258 Score: 68
Period size: 7 Copynumber: 11.7 Consensus size: 7
26166 TAAAAAATAA
26176 ATAAAAT
1 ATAAAAT
26183 AT--AAT
1 ATAAAAT
26188 ATAAAAT
1 ATAAAAT
26195 ATAAAAT
1 ATAAAAT
*
26202 AAAAAAT
1 ATAAAAT
26209 -TATAAAT
1 ATA-AAAT
26216 AT--AAT
1 ATAAAAT
26221 ATAAATAT
1 ATAAA-AT
26229 ATAAATAT
1 ATAAA-AT
26237 ATTAAAATTT
1 A-TAAAA--T
26247 ATAAAAT
1 ATAAAAT
26254 ATAAA
1 ATAAA
26259 TTATTAATAT
Statistics
Matches: 64, Mismatches: 2, Indels: 20
0.74 0.02 0.23
Matches are distributed among these distances:
5 10 0.16
6 1 0.02
7 29 0.45
8 13 0.20
9 9 0.14
10 2 0.03
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (7 bp):
ATAAAAT
Found at i:26187 original size:24 final size:24
Alignment explanation
Indices: 26159--26205 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
26149 TTATATAAAC
26159 ATAATATTAAAAAAT-AAATAAAAT
1 ATAATA-TAAAAAATAAAATAAAAT
*
26183 ATAATATAAAATATAAAATAAAA
1 ATAATATAAAAAATAAAATAAAA
26206 AATTATAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 7 0.33
24 14 0.67
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (24 bp):
ATAATATAAAAAATAAAATAAAAT
Found at i:26221 original size:33 final size:37
Alignment explanation
Indices: 26176--26257 Score: 118
Period size: 33 Copynumber: 2.3 Consensus size: 37
26166 TAAAAAATAA
26176 ATAAAATATAATATAAA-ATATAAA-ATA-AAAAATT
1 ATAAAATATAATATAAATATATAAATATATAAAAATT
*
26210 AT-AAATATAATATAAATATATAAATATATTAAAATTT
1 ATAAAATATAATATAAATATATAAATATA-TAAAAATT
26247 ATAAAATATAA
1 ATAAAATATAA
26258 ATTATTAATA
Statistics
Matches: 42, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
33 14 0.33
34 9 0.21
35 3 0.07
37 8 0.19
38 8 0.19
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (37 bp):
ATAAAATATAATATAAATATATAAATATATAAAAATT
Found at i:26274 original size:32 final size:34
Alignment explanation
Indices: 26180--26290 Score: 115
Period size: 33 Copynumber: 3.4 Consensus size: 34
26170 AAATAAATAA
* *
26180 AATATAATATAAA-ATATAAA-ATA-AAAAATTAT
1 AATAAAATATAAATATATAAATATATTAAAATT-T
*
26212 AAATATAATATAAATATATAAATATATTAAAATTT
1 -AATAAAATATAAATATATAAATATATTAAAATTT
* *
26247 -ATAAAATATAAAT-TATTAATATGTTAAAATTT
1 AATAAAATATAAATATATAAATATATTAAAATTT
*
26279 AATAATATATAA
1 AATAAAATATAA
26291 CACTTTTAAA
Statistics
Matches: 69, Mismatches: 5, Indels: 8
0.84 0.06 0.10
Matches are distributed among these distances:
32 17 0.25
33 35 0.51
34 7 0.10
35 4 0.06
36 6 0.09
ACGTcount: A:0.61, C:0.00, G:0.01, T:0.38
Consensus pattern (34 bp):
AATAAAATATAAATATATAAATATATTAAAATTT
Found at i:26915 original size:2 final size:2
Alignment explanation
Indices: 26908--26945 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
26898 CTATAATAAC
26908 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
26946 GTAAAGTCAT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:31401 original size:2 final size:2
Alignment explanation
Indices: 31394--31433 Score: 73
Period size: 2 Copynumber: 20.5 Consensus size: 2
31384 AAATGGAAAG
31394 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
31434 ACATTTCGAA
Statistics
Matches: 37, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 36 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:40377 original size:28 final size:28
Alignment explanation
Indices: 40345--40399 Score: 101
Period size: 28 Copynumber: 2.0 Consensus size: 28
40335 CAAATGCCAC
*
40345 CCTTTGTATTTGTCAAATATGGTGGTTT
1 CCTTTATATTTGTCAAATATGGTGGTTT
40373 CCTTTATATTTGTCAAATATGGTGGTT
1 CCTTTATATTTGTCAAATATGGTGGTT
40400 ATTTTTTATT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.20, C:0.11, G:0.20, T:0.49
Consensus pattern (28 bp):
CCTTTATATTTGTCAAATATGGTGGTTT
Found at i:42977 original size:21 final size:22
Alignment explanation
Indices: 42948--42993 Score: 58
Period size: 21 Copynumber: 2.1 Consensus size: 22
42938 CGTTCAGACA
** *
42948 AGTAGTACTCCGCAGCAGGTGG
1 AGTAGTACTCCAAAACAGGTGG
42970 AGTA-TACTCCAAAACAGGTGG
1 AGTAGTACTCCAAAACAGGTGG
42991 AGT
1 AGT
42994 TTCAACAGAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 17 0.81
22 4 0.19
ACGTcount: A:0.30, C:0.20, G:0.30, T:0.20
Consensus pattern (22 bp):
AGTAGTACTCCAAAACAGGTGG
Found at i:46535 original size:30 final size:31
Alignment explanation
Indices: 46499--46613 Score: 115
Period size: 30 Copynumber: 3.7 Consensus size: 31
46489 ATACCTTTTT
46499 AAAGTCCACGACTCAGTGGCATTTTGTC-TC
1 AAAGTCCACGACTCAGTGGCATTTTGTCTTC
* *
46529 AAAGTCCACGACTCAGTGGCATTTTTTCTTT
1 AAAGTCCACGACTCAGTGGCATTTTGTCTTC
* * * ** *
46560 AAAGCCCACAACTCCGTGGCACCTTGTTCCTTT
1 AAAGTCCACGACTCAGTGGCATTTTG-T-CTTC
* *
46593 TAAGTCCACGACTCCGTGGCA
1 AAAGTCCACGACTCAGTGGCA
46614 CCCTTTTAAA
Statistics
Matches: 71, Mismatches: 11, Indels: 3
0.84 0.13 0.04
Matches are distributed among these distances:
30 27 0.38
31 21 0.30
32 1 0.01
33 22 0.31
ACGTcount: A:0.23, C:0.30, G:0.18, T:0.30
Consensus pattern (31 bp):
AAAGTCCACGACTCAGTGGCATTTTGTCTTC
Found at i:46678 original size:25 final size:25
Alignment explanation
Indices: 46650--46708 Score: 82
Period size: 27 Copynumber: 2.3 Consensus size: 25
46640 AACTTTTTTT
*
46650 CATCTTTAAGTCCACAACTCCGTGG
1 CATCTTTAAGCCCACAACTCCGTGG
46675 CATCCGTTTAAGCCCACAACTCCGTGG
1 CAT-C-TTTAAGCCCACAACTCCGTGG
*
46702 CACCTTT
1 CATCTTT
46709 TTCTTTTTAA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
25 6 0.20
26 2 0.07
27 22 0.73
ACGTcount: A:0.22, C:0.36, G:0.15, T:0.27
Consensus pattern (25 bp):
CATCTTTAAGCCCACAACTCCGTGG
Found at i:46727 original size:34 final size:34
Alignment explanation
Indices: 46684--47678 Score: 1180
Period size: 34 Copynumber: 28.8 Consensus size: 34
46674 GCATCCGTTT
46684 AAGCCCACAACTCCGTGGCACCTTTTTCTTTTTA
1 AAGCCCACAACTCCGTGGCACCTTTTTCTTTTTA
46718 AAGCCCACAACTCCGTGGCACCTTTTTC-TTTTA
1 AAGCCCACAACTCCGTGGCACCTTTTTCTTTTTA
* *
46751 AAGCCCACAACTCTGTGGCACTCTTTTTCCCTTTTCA
1 AAGCCCACAACTCCGTGGCAC-CTTTTT--CTTTTTA
*
46788 AAGCCCACAACTCCGTGGCACCTTCTTCTTTTTA
1 AAGCCCACAACTCCGTGGCACCTTTTTCTTTTTA
*
46822 AAGCCCACAACTCCGTGGCACCTTCTTCTTTTTA
1 AAGCCCACAACTCCGTGGCACCTTTTTCTTTTTA
46856 AAGCCCACAACTCCGTGGCACCTTTTTC-TTTTA
1 AAGCCCACAACTCCGTGGCACCTTTTTCTTTTTA
*
46889 AAGCCCACAACTCTGTGGCACTCTTTTTCTTCTTTTCA
1 AAGCCCACAACTCCGTGGCAC-CTTTTTC-T-TTTT-A
*
46927 AAGCCCACAACTCCGTGGCACCTTCTTCTTTTTA
1 AAGCCCACAACTCCGTGGCACCTTTTTCTTTTTA
*
46961 AAGCCCACAACTCCGTGGCACCTTCTTCTTTTTA
1 AAGCCCACAACTCCGTGGCACCTTTTTCTTTTTA
46995 AAGCCCACAACTCCGTGGCACCTTTTTC-TTTTA
1 AAGCCCACAACTCCGTGGCACCTTTTTCTTTTTA
* *
47028 AAGCCCACAACTCTGTGGCACTCTTTTTCCCTTTTCA
1 AAGCCCACAACTCCGTGGCAC-CTTTTT--CTTTTTA
*
47065 AAGCCCACAACTCCGTGGCACCTTCTTCTTTTTA
1 AAGCCCACAACTCCGTGGCACCTTTTTCTTTTTA
*
47099 AAGCCCACAACTCCGTGGCACCTTCTTCTTTTTA
1 AAGCCCACAACTCCGTGGCACCTTTTTCTTTTTA
* *
47133 AAGCCCACAACTCCGTAGGCACTCTTTTTCCTTCT-
1 AAGCCCACAACTCCGT-GGCAC-CTTTTTCTTTTTA
* *
47168 AAGCCCACAACTCCGTGGCACTCTTTTTCCTTCT-
1 AAGCCCACAACTCCGTGGCAC-CTTTTTCTTTTTA
*
47202 AAGCCCACGACTCCGTGGCACC-----C-TTTT-
1 AAGCCCACAACTCCGTGGCACCTTTTTCTTTTTA
* * * *
47229 AAGTCCACGACTCCGTGGCACTCTTTTTCCTTCT-
1 AAGCCCACAACTCCGTGGCAC-CTTTTTCTTTTTA
*
47263 AAGCCCACAACTCCGTGGCACTCTTTTTTCCCTTTTA
1 AAGCCCACAACTCCGTGGCAC-C-TTTTT-CTTTTTA
*
47300 AAGCCCACAACTCCGTGGCACTTTTTTC-TTTTA
1 AAGCCCACAACTCCGTGGCACCTTTTTCTTTTTA
*
47333 AAGCCCACAACTCCGTGGCACTCTTTTT-TTCCCTTTT
1 AAGCCCACAACTCCGTGGCAC-CTTTTTCTT---TTTA
* * * **
47370 AAGTCCACAACTCCGTGGCATCTTTCTCCCTTCCTA
1 AAGCCCACAACTCCGTGGCACCTTT-T-TCTTTTTA
* * * *
47406 AAGCCCACACAAGTCGGTGGCAACCTTCTTCTTTTCA
1 AAG-CC-CACAACTCCGTGGC-ACCTTTTTCTTTTTA
*
47443 AAGCCCACAACTCCGTGGCACCTTCTTC-TTTTA
1 AAGCCCACAACTCCGTGGCACCTTTTTCTTTTTA
* *
47476 AAGCCCACAACTTCGTGGCACTCTTTTTTCCTTTTCA
1 AAGCCCACAACTCCGTGGCAC-C-TTTTT-CTTTTTA
**
47513 AAGCCCACAACTCCGTGGCACCTTTTTCCGTTTA
1 AAGCCCACAACTCCGTGGCACCTTTTTCTTTTTA
*
47547 AAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTCA
1 AAGCCCACAACTCCGTGGCAC-CTTTTT--CTTTTTA
*
47584 AAGCCCACAACTCCGTGGCACTTTTTTC-TTTTA
1 AAGCCCACAACTCCGTGGCACCTTTTTCTTTTTA
*
47617 AAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTT-
1 AAGCCCACAACTCCGTGGCAC-CTTTTT-CTTTTTA
* *
47652 AAGTCCACAACTCCGTGGCATCTTTTT
1 AAGCCCACAACTCCGTGGCACCTTTTT
47679 TCCTTCCCAA
Statistics
Matches: 854, Mismatches: 61, Indels: 92
0.85 0.06 0.09
Matches are distributed among these distances:
27 23 0.03
28 2 0.00
33 152 0.18
34 348 0.41
35 82 0.10
36 48 0.06
37 159 0.19
38 34 0.04
39 6 0.01
ACGTcount: A:0.20, C:0.35, G:0.12, T:0.33
Consensus pattern (34 bp):
AAGCCCACAACTCCGTGGCACCTTTTTCTTTTTA
Found at i:46801 original size:70 final size:69
Alignment explanation
Indices: 46527--47696 Score: 1220
Period size: 70 Copynumber: 17.2 Consensus size: 69
46517 GCATTTTGTC
* * * * *
46527 TCAAAGTCCACGACTCAGTGGCA-TTTTTTC-TTTAAAGCCCACAACTCCGTGGCAC-CTTGTTC
1 TCAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTC
46589 CTTT
66 CTTT
* * * * * *
46593 T--AAGTCCACGACTCCGTGGCACC-----CTTTTAAAGCCCACAATTCTGTGGAACTTTTTTTC
1 TCAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTC
*
46651 ATCTT
66 CT-TT
* * *
46656 T--AAGTCCACAACTCCGTGGCA-----TCCGTTT-AAGCCCACAACTCCGTGGCAC-CTTTTT-
1 TCAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTC
46711 CTTT
66 CTTT
* *
46715 TTAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTAAAGCCCACAACTCTGTGGCACTCTTTTTC
1 TCAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTAAAGCCCACAACTCCGTGGCACTCTTTTT-
46780 CCTTT
65 CCTTT
* *
46785 TCAAAGCCCACAACTCCGTGGCACCTTCTTCTTTTTAAAGCCCACAACTCCGTGGCAC-CTTCTT
1 TCAAAGCCCACAACTCCGTGGCACCTTTTTC-TTTTAAAGCCCACAACTCCGTGGCACTCTTTTT
46849 -CTTT
65 CCTTT
* *
46853 TTAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTAAAGCCCACAACTCTGTGGCACTCTTTTTC
1 TCAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTC
46918 TTCTTT
66 --CTTT
* *
46924 TCAAAGCCCACAACTCCGTGGCACCTTCTTCTTTTTAAAGCCCACAACTCCGTGGCAC-CTTCTT
1 TCAAAGCCCACAACTCCGTGGCACCTTTTTC-TTTTAAAGCCCACAACTCCGTGGCACTCTTTTT
46988 -CTTT
65 CCTTT
* *
46992 TTAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTAAAGCCCACAACTCTGTGGCACTCTTTTTC
1 TCAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTAAAGCCCACAACTCCGTGGCACTCTTTTT-
47057 CCTTT
65 CCTTT
* *
47062 TCAAAGCCCACAACTCCGTGGCACCTTCTTCTTTTTAAAGCCCACAACTCCGTGGCAC-CTTCTT
1 TCAAAGCCCACAACTCCGTGGCACCTTTTTC-TTTTAAAGCCCACAACTCCGTGGCACTCTTTTT
47126 -CTTT
65 CCTTT
* *
47130 TTAAAGCCCACAACTCCGTAGGCACTCTTTTTCCTTCT-AAGCCCACAACTCCGTGGCACTCTTT
1 TCAAAGCCCACAACTCCGT-GGCAC-CTTTTT-CTTTTAAAGCCCACAACTCCGTGGCACTCTTT
47194 TTCC--T
63 TTCCTTT
* * * *
47199 TCTAAGCCCACGACTCCGTGGCACC-----CTTTT-AAGTCCACGACTCCGTGGCACTCTTTTTC
1 TCAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTC
47258 C--T
66 CTTT
*
47260 TCTAAGCCCACAACTCCGTGGCACTCTTTTTTCCCTTTTAAAGCCCACAACTCCGTGGCACT-TT
1 TCAAAGCCCACAACTCCGTGGCAC-C-TTTTT--CTTTTAAAGCCCACAACTCCGTGGCACTCTT
47324 TTT-CTTT
62 TTTCCTTT
*
47331 T-AAAGCCCACAACTCCGTGGCACTCTTTTTTTCCCTTTT-AAGTCCACAACTCCGTGGCA-TCT
1 TCAAAGCCCACAACTCCGTGGCAC-C--TTTTT--CTTTTAAAGCCCACAACTCCGTGGCACTCT
* *
47393 TTCTCCCTT
61 TTTTCCTTT
* * * *
47402 CCTAAAGCCCACACAAGTCGGTGGCAACCTTCTTCTTTTCAAAGCCCACAACTCCGTGGCAC-CT
1 TC-AAAG-CC-CACAACTCCGTGGC-ACCTTTTTCTTTT-AAAGCCCACAACTCCGTGGCACTCT
*
47466 TCTT-CTTT
61 TTTTCCTTT
*
47474 T-AAAGCCCACAACTTCGTGGCACTCTTTTTTCCTTTTCAAAGCCCACAACTCCGTGGCAC-CTT
1 TCAAAGCCCACAACTCCGTGGCAC-C-TTTTT-CTTTT-AAAGCCCACAACTCCGTGGCACTCTT
*
47537 TTTCCGTT
62 TTTCCTTT
47545 T-AAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTCAAAGCCCACAACTCCGTGGCACT-TT
1 TCAAAGCCCACAACTCCGTGGCAC-CTTTTT--CTTTT-AAAGCCCACAACTCCGTGGCACTCTT
47608 TTT-CTTT
62 TTTCCTTT
*
47615 T-AAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTT-AAGTCCACAACTCCGTGGCA-TCTTT
1 TCAAAGCCCACAACTCCGTGGCAC-CTTTTT--CTTTTAAAGCCCACAACTCCGTGGCACTC-TT
*
47677 TTTCCTTC
62 TTTCCTTT
*
47685 CCAAAGCCCACA
1 TCAAAGCCCACA
47697 CAAGTCGGTG
Statistics
Matches: 963, Mismatches: 76, Indels: 125
0.83 0.07 0.11
Matches are distributed among these distances:
59 3 0.00
60 2 0.00
61 102 0.11
62 25 0.03
63 26 0.03
64 19 0.02
66 6 0.01
67 74 0.08
68 140 0.15
69 56 0.06
70 230 0.24
71 204 0.21
72 28 0.03
73 31 0.03
74 2 0.00
75 13 0.01
76 2 0.00
ACGTcount: A:0.20, C:0.34, G:0.12, T:0.33
Consensus pattern (69 bp):
TCAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTC
CTTT
Found at i:46881 original size:104 final size:104
Alignment explanation
Indices: 46684--47678 Score: 1175
Period size: 104 Copynumber: 9.6 Consensus size: 104
46674 GCATCCGTTT
*
46684 AAGCCCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCACAACTCCGTGGCAC-CTTTTTC-T
1 AAGCCCACAACTCCGTGGCACCTTCTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCTT
*
46747 TTTAAAGCCCACAACTCTGTGGCACTCTTTTTCCCTTTTCA
66 TTTAAAGCCCACAACTCCGTGGCAC-CTTTTT-CCTTTTCA
*
46788 AAGCCCACAACTCCGTGGCACCTTCTTCTTTTTAAAGCCCACAACTCCGTGGCAC-CTTCTTCTT
1 AAGCCCACAACTCCGTGGCACCTTCTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCTT
46852 TTTAAAGCCCACAACTCCGTGGCACCTTTTT-CTTTT-A
66 TTTAAAGCCCACAACTCCGTGGCACCTTTTTCCTTTTCA
* * *
46889 AAGCCCACAACTCTGTGGCACTCTTTTTCTTCTTTTCAAAGCCCACAACTCCGTGGCAC-CTTCT
1 AAGCCCACAACTCCGTGGCAC-C---TTCTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTTT
* *
46953 TCTTTTTAAAGCCCACAACTCCGTGGCACCTTCTT-CTTTTTA
62 TCTTTTTAAAGCCCACAACTCCGTGGCACCTTTTTCCTTTTCA
* *
46995 AAGCCCACAACTCCGTGGCACCTTTTTC-TTTTAAAGCCCACAACTCTGTGGCACTCTTTTTCCC
1 AAGCCCACAACTCCGTGGCACCTTCTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTTTT--C
* * *
47059 TTTTCAAAGCCCACAACTCCGTGGCACCTTCTT-CTTTTTA
64 TTTTTAAAGCCCACAACTCCGTGGCACCTTTTTCCTTTTCA
*
47099 AAGCCCACAACTCCGTGGCACCTTCTTCTTTTTAAAGCCCACAACTCCGTAGGCACTCTTTTTCC
1 AAGCCCACAACTCCGTGGCACCTTCTTCTTTTTAAAGCCCACAACTCCGT-GGCACTCTTTTTCT
* *
47164 TTCT-AAGCCCACAACTCCGTGGCACTCTTTTTCC--TTCT
65 TTTTAAAGCCCACAACTCCGTGGCAC-CTTTTTCCTTTTCA
* * * *
47202 AAGCCCACGACTCCGTGGCA-C--C--C-TTTT-AAGTCCACGACTCCGTGGCACTCTTTTTCCT
1 AAGCCCACAACTCCGTGGCACCTTCTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCTT
*
47260 TCT-AAGCCCACAACTCCGTGGCACTCTTTTTTCCCTTTT-A
66 TTTAAAGCCCACAACTCCGTGGCAC-C-TTTTT-CCTTTTCA
* *
47300 AAGCCCACAACTCCGTGGCACTTTTTTC-TTTTAAAGCCCACAACTCCGTGGCACTCTTTTT-TT
1 AAGCCCACAACTCCGTGGCACCTTCTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCTT
* * * * * *
47363 CCCTTTTAAGTCCACAACTCCGTGGCATCTTTCTCCCTTCCTA
66 ---TTTAAAGCCCACAACTCCGTGGCACCTTTTTCCTTTTC-A
* * * *
47406 AAGCCCACACAAGTCGGTGGCAACCTTCTTCTTTTCAAAGCCCACAACTCCGTGGCAC-CTTCTT
1 AAG-CC-CACAACTCCGTGGC-ACCTTCTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTTTT
*
47470 C-TTTTAAAGCCCACAACTTCGTGGCACTCTTTTTTCCTTTTCA
63 CTTTTTAAAGCCCACAACTCCGTGGCAC-C-TTTTTCCTTTTCA
* **
47513 AAGCCCACAACTCCGTGGCACCTTTTTCCGTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCC
1 AAGCCCACAACTCCGTGGCACCTTCTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTTTT--C
* *
47578 TTTTCAAAGCCCACAACTCCGTGGCA-CTTTTTTCTTTT-A
64 TTTTTAAAGCCCACAACTCCGTGGCACCTTTTTCCTTTTCA
* * *
47617 AAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTT-AAGTCCACAACTCCGTGGCA-TCTTTTT
1 AAGCCCACAACTCCGTGGCAC-CTTCTT-CTTTTTAAAGCCCACAACTCCGTGGCACTCTTTTT
47679 TCCTTCCCAA
Statistics
Matches: 788, Mismatches: 61, Indels: 84
0.84 0.07 0.09
Matches are distributed among these distances:
95 41 0.05
96 19 0.02
97 6 0.01
98 20 0.03
99 2 0.00
100 1 0.00
101 45 0.06
102 17 0.02
103 48 0.06
104 232 0.29
105 179 0.23
106 69 0.09
107 27 0.03
108 44 0.06
109 13 0.02
110 25 0.03
ACGTcount: A:0.20, C:0.35, G:0.12, T:0.33
Consensus pattern (104 bp):
AAGCCCACAACTCCGTGGCACCTTCTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCTT
TTTAAAGCCCACAACTCCGTGGCACCTTTTTCCTTTTCA
Found at i:47254 original size:27 final size:27
Alignment explanation
Indices: 47196--47255 Score: 93
Period size: 27 Copynumber: 2.2 Consensus size: 27
47186 CACTCTTTTT
*
47196 CCTTCTAAGCCCACGACTCCGTGGCAC
1 CCTTTTAAGCCCACGACTCCGTGGCAC
*
47223 CCTTTTAAGTCCACGACTCCGTGGCAC
1 CCTTTTAAGCCCACGACTCCGTGGCAC
*
47250 TCTTTT
1 CCTTTT
47256 TCCTTCTAAG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.17, C:0.38, G:0.17, T:0.28
Consensus pattern (27 bp):
CCTTTTAAGCCCACGACTCCGTGGCAC
Found at i:47717 original size:104 final size:99
Alignment explanation
Indices: 46529--47696 Score: 1034
Period size: 104 Copynumber: 11.4 Consensus size: 99
46519 ATTTTGTCTC
* * * *
46529 AAAGTCCACGACTCAGTGGCA-TTTTTT-CTTT-AAAGCCCACAACTCCGTGGCACCTTGTTCCT
1 AAAGCCCACAACTCCGTGGCACTTTTTTCCTTTCAAAGCCCACAACTCCGTGGCA-C-TCTT-CT
* *
46591 TTT-AAGTCCACGACTCCGTGGCA-C-----CCTTTT
63 TTTAAAGCCCACAACTCCGTGGCACCTTTTTCCTTTT
* * * * *
46621 AAAGCCCACAATTCTGTGGAACTTTTTTTCATCTTT--AAGTCCACAACTCCGTGGCA-TC--CG
1 AAAGCCCACAACTCCGTGGCAC-TTTTTTC--CTTTCAAAGCCCACAACTCCGTGGCACTCTTCT
*
46681 TTT-AAGCCCACAACTCCGTGGCACCTTTTTCTTTTT
63 TTTAAAGCCCACAACTCCGTGGCACCTTTTTCCTTTT
* * *
46717 AAAGCCCACAACTCCGTGGCACCTTTTT-CTTTTAAAGCCCACAACTCTGTGGCACTCTTTTTCC
1 AAAGCCCACAACTCCGTGGCACTTTTTTCCTTTCAAAGCCCACAACTCCGTGGCACTC---TT--
* *
46781 CTTTTCAAAGCCCACAACTCCGTGGCACCTTCTTCTTTTT
61 CTTTT-AAAGCCCACAACTCCGTGGCACCTTTTTCCTTTT
* * * * *
46821 AAAGCCCACAACTCCGTGGCACCTTCTTCTTTTTAAAGCCCACAACTCCGTGGCACCTTTTTCTT
1 AAAGCCCACAACTCCGTGGCACTTTTTTCCTTTCAAAGCCCACAACTCCGTGGCA-C-TCTTCTT
*
46886 TTAAAGCCCACAACTCTGTGGCACTCTTTTTCTTCTTTT
64 TTAAAGCCCACAACTCCGTGGCAC-CTTTTTC--CTTTT
* * * *
46925 CAAAGCCCACAACTCCGTGGCACCTTCTTCTTTTTAAAGCCCACAACTCCGTGGCACCTTCTTCT
1 -AAAGCCCACAACTCCGTGGCACTTTTTTCCTTTCAAAGCCCACAACTCCGTGGCA-C-TCTTC-
46990 TTTTAAAGCCCACAACTCCGTGGCACCTTTTT-CTTTT
62 TTTTAAAGCCCACAACTCCGTGGCACCTTTTTCCTTTT
*
47027 AAAGCCCACAACTCTGTGGCACTCTTTTTCCCTTTTCAAAGCCCACAACTCCGTGGCACCTTCTT
1 AAAGCCCACAACTCCGTGGCACT-TTTTT-CC-TTTCAAAGCCCACAACTCCGTGGCA-C-TCTT
* *
47092 CTTTTTAAAGCCCACAACTCCGTGGCACCTTCTTCTTTTT
61 C-TTTTAAAGCCCACAACTCCGTGGCACCTTTTTCCTTTT
* *
47132 AAAGCCCACAACTCCGTAGGCACTCTTTTTCC-TTCTAAGCCCACAACTCCGTGGCACTCTTTTT
1 AAAGCCCACAACTCCGT-GGCACT-TTTTTCCTTTCAAAGCCCACAACTCCGTGGCACTCTTCTT
* *
47196 CCTTCTAAGCCCACGACTCCGTGGCA-C-----CCTTTT
64 --TT-AAAGCCCACAACTCCGTGGCACCTTTTTCCTTTT
* * *
47229 -AAGTCCACGACTCCGTGGCACTCTTTTTCC-TTCTAAGCCCACAACTCCGTGGCACTCTTTTTT
1 AAAGCCCACAACTCCGTGGCACT-TTTTTCCTTTCAAAGCCCACAACTCCGTGGCACTC----TT
*
47292 CCCTTTTAAAGCCCACAACTCCGTGGCA-CTTTTTTCTTTT
61 --CTTTTAAAGCCCACAACTCCGTGGCACCTTTTTCCTTTT
* *
47332 AAAGCCCACAACTCCGTGGCACTCTTTTTTTCCCTTT-TAAGTCCACAACTCCGTGGCA-TCTTT
1 AAAGCCCACAACTCCGTGGCA--C-TTTTTT-CCTTTCAAAGCCCACAACTCCGTGGCACTC-TT
* * *
47395 CTCCCTTCCTAAAGCCCACACAAGTCGGTGGCAACCTTCTT-CTTTT
61 CT---TT--TAAAG-CC-CACAACTCCGTGGC-ACCTTTTTCCTTTT
* * * *
47441 CAAAGCCCACAACTCCGTGGCACCTTCTT-CTTTTAAAGCCCACAACTTCGTGGCACTCTTTTTT
1 -AAAGCCCACAACTCCGTGGCACTTTTTTCCTTTCAAAGCCCACAACTCCGTGGCACTC----TT
*
47505 CCTTTTCAAAGCCCACAACTCCGTGGCACCTTTTTCCGTTT
61 -CTTTT-AAAGCCCACAACTCCGTGGCACCTTTTTCCTTTT
*
47546 AAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTCAAAGCCCACAACTCCGTGGCACTTTTTT
1 AAAGCCCACAACTCCGTGGCACT-TTTTT-CC-TTTCAAAGCCCACAACTCCGTGGCAC--TCTT
47611 CTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTT
61 CTTTTAAAGCCCACAACTCCGTGGCAC-CTTTTT-CCTTTT
* *
47652 -AAGTCCACAACTCCGTGGCATCTTTTTTCCTTCCCAAAGCCCACA
1 AAAGCCCACAACTCCGTGGCA-CTTTTTTCCTT-TCAAAGCCCACA
47697 CAAGTCGGTG
Statistics
Matches: 922, Mismatches: 70, Indels: 156
0.80 0.06 0.14
Matches are distributed among these distances:
90 22 0.02
91 1 0.00
92 20 0.02
93 1 0.00
94 24 0.03
95 48 0.05
96 57 0.06
97 9 0.01
98 20 0.02
99 4 0.00
100 2 0.00
101 50 0.05
102 28 0.03
103 53 0.06
104 213 0.23
105 173 0.19
106 81 0.09
107 37 0.04
108 41 0.04
109 6 0.01
110 30 0.03
111 2 0.00
ACGTcount: A:0.20, C:0.34, G:0.12, T:0.33
Consensus pattern (99 bp):
AAAGCCCACAACTCCGTGGCACTTTTTTCCTTTCAAAGCCCACAACTCCGTGGCACTCTTCTTTT
AAAGCCCACAACTCCGTGGCACCTTTTTCCTTTT
Found at i:47810 original size:43 final size:43
Alignment explanation
Indices: 47750--48016 Score: 336
Period size: 43 Copynumber: 5.9 Consensus size: 43
47740 GCAACCCCTC
* *
47750 TAAGCCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTT
* *
47793 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCA----C--CTT
*
47842 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTT
* *
47885 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTTTCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCA-C-----CTT
*
47934 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTT
* *
47977 TAAGTCCAATATAGCAGGCCTTGAATCAGCATATTGGCAC
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCAC
48017 ATTTTCCATC
Statistics
Matches: 196, Mismatches: 16, Indels: 24
0.83 0.07 0.10
Matches are distributed among these distances:
43 114 0.58
44 1 0.01
45 1 0.01
47 1 0.01
48 1 0.01
49 78 0.40
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (43 bp):
TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTT
Found at i:47862 original size:49 final size:48
Alignment explanation
Indices: 47750--48125 Score: 332
Period size: 43 Copynumber: 7.9 Consensus size: 48
47740 GCAACCCCTC
* *
47750 TAAGCCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C-CTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCATCTTCTCTT
* *
47793 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCATCTTC-TCTT
*
47842 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C-CTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCATCTTCTCTT
* * * *
47885 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTTTCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCATC-TTCTCTT
*
47934 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C-CTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCATCTTCTCTT
* * *
47977 TAAGTCCAATATAGCAGGCCTTGAATCAGCATATTGGCACATTTTCCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGG--CATCTT-C-TCTT
** * *
48029 TAAGTTTAATGTAGCTGGCCTTGAATCAGCACATTGACATCCTTTTCTCATCAT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCAT-C--TTCTC-T--T
* * * * * *
48083 TAAGCCCAATATCGTTGGCCGTGAATCAACATATTGGCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCATCTT
48126 TATCACTTTT
Statistics
Matches: 271, Mismatches: 35, Indels: 46
0.77 0.10 0.13
Matches are distributed among these distances:
43 111 0.41
45 3 0.01
47 1 0.00
49 78 0.29
50 4 0.01
51 4 0.01
52 36 0.13
53 3 0.01
54 31 0.11
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.32
Consensus pattern (48 bp):
TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCATCTTCTCTT
Found at i:47912 original size:92 final size:92
Alignment explanation
Indices: 47750--48073 Score: 522
Period size: 92 Copynumber: 3.5 Consensus size: 92
47740 GCAACCCCTC
*
47750 TAAGCCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCGCTGGCCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCGCTGGCCTT
47815 GAATCAGCATATTGGCATCTTCATCTT
66 GAATCAGCATATTGGCATCTTCATCTT
47842 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCGCTGGCCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCGCTGGCCTT
* **
47907 GAATCAGCATATTGGCACCTTTTTCTT
66 GAATCAGCATATTGGCATCTTCATCTT
* *
47934 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATAGCAGGCCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCGCTGGCCTT
*
47999 GAATCAGCATATTGGCACATTTTCCATCTT
66 GAATCAGCATATTGG--CATCTT-CATCTT
** *
48029 TAAGTTTAATGTAGCTGGCCTTGAATCAGCACATTGACATCCTTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA-CCTTT
48074 TCTCATCATT
Statistics
Matches: 215, Mismatches: 13, Indels: 4
0.93 0.06 0.02
Matches are distributed among these distances:
92 166 0.77
94 4 0.02
95 40 0.19
96 5 0.02
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.32
Consensus pattern (92 bp):
TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCGCTGGCCTT
GAATCAGCATATTGGCATCTTCATCTT
Found at i:48184 original size:67 final size:68
Alignment explanation
Indices: 48076--48202 Score: 175
Period size: 67 Copynumber: 1.9 Consensus size: 68
48066 CATCCTTTTC
* * *
48076 TCATCATTAAGCCCAATATCGTTGGCCGTGAATCAACATATTGGCATCTTTATCA-CTTTTCTCA
1 TCATCATTAAGCCCAATATCGCTGGCCGTGAATCAACATATTGGCACCTTCATCATCTTTTCTCA
48140 TCT
66 TCT
* * * * *
48143 TCATCTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATATTGGCACCTTCATCATCTTT
1 TCATCATTAAGCCCAATATCGCTGGCCGTGAATCAACATATTGGCACCTTCATCATCTTT
48203 AAAACCCAAT
Statistics
Matches: 51, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
67 47 0.92
68 4 0.08
ACGTcount: A:0.24, C:0.25, G:0.13, T:0.38
Consensus pattern (68 bp):
TCATCATTAAGCCCAATATCGCTGGCCGTGAATCAACATATTGGCACCTTCATCATCTTTTCTCA
TCT
Found at i:48962 original size:33 final size:33
Alignment explanation
Indices: 48925--48991 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
48915 TTCAACGATT
48925 TGTATCGATACATAAAATATTGTATCGATACAA
1 TGTATCGATACATAAAATATTGTATCGATACAA
*** *
48958 TGTATCGATACATATTTTTTTGTATCGATACAA
1 TGTATCGATACATAAAATATTGTATCGATACAA
48991 T
1 T
48992 TTAAGCTACT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.36, C:0.12, G:0.12, T:0.40
Consensus pattern (33 bp):
TGTATCGATACATAAAATATTGTATCGATACAA
Found at i:48963 original size:13 final size:13
Alignment explanation
Indices: 48945--48969 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
48935 CATAAAATAT
48945 TGTATCGATACAA
1 TGTATCGATACAA
48958 TGTATCGATACA
1 TGTATCGATACA
48970 TATTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:49053 original size:13 final size:13
Alignment explanation
Indices: 49035--49059 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
49025 ATTACTCACA
49035 TGTATCGATACAT
1 TGTATCGATACAT
49048 TGTATCGATACA
1 TGTATCGATACA
49060 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:49195 original size:52 final size:52
Alignment explanation
Indices: 49068--49198 Score: 217
Period size: 52 Copynumber: 2.5 Consensus size: 52
49058 CACTGATCTT
* *
49068 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACATTATAAAA
1 TGTATCGATACATGCAGGCAAATTTTCCCAGATGTATCGATACACTATAAAA
*
49120 TGTATCGATACATGCAGGCAAATTTTCCCAGATGTATCGATACACTATTAAA
1 TGTATCGATACATGCAGGCAAATTTTCCCAGATGTATCGATACACTATAAAA
**
49172 TGTATCGATACATGCAGATAAATTTTC
1 TGTATCGATACATGCAGGCAAATTTTC
49199 ATATTTCGGG
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 74 1.00
ACGTcount: A:0.35, C:0.18, G:0.16, T:0.31
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTTCCCAGATGTATCGATACACTATAAAA
Found at i:52445 original size:21 final size:21
Alignment explanation
Indices: 52420--52462 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
52410 CATGTCAGGA
52420 GCATCTCGTCATGCAATGAAT
1 GCATCTCGTCATGCAATGAAT
52441 GCATCTCGTCATGCAATGAAT
1 GCATCTCGTCATGCAATGAAT
52462 G
1 G
52463 TCATTTTGAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (21 bp):
GCATCTCGTCATGCAATGAAT
Found at i:56124 original size:1 final size:1
Alignment explanation
Indices: 56120--56146 Score: 54
Period size: 1 Copynumber: 27.0 Consensus size: 1
56110 AAAGAGAGTC
56120 AAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAA
56147 GGGTGCAAAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 26 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:57458 original size:30 final size:31
Alignment explanation
Indices: 57422--57536 Score: 115
Period size: 30 Copynumber: 3.7 Consensus size: 31
57412 ATACCTTTTT
57422 AAAGTCCACGACTCAGTGGCATTTTGTC-TC
1 AAAGTCCACGACTCAGTGGCATTTTGTCTTC
* *
57452 AAAGTCCACGACTCAGTGGCATTTTTTCTTT
1 AAAGTCCACGACTCAGTGGCATTTTGTCTTC
* * * ** *
57483 AAAGCCCACAACTCCGTGGCACCTTGTTCCTTT
1 AAAGTCCACGACTCAGTGGCATTTTG-T-CTTC
* *
57516 TAAGTCCACGACTCCGTGGCA
1 AAAGTCCACGACTCAGTGGCA
57537 CCCTTTTAAA
Statistics
Matches: 71, Mismatches: 11, Indels: 3
0.84 0.13 0.04
Matches are distributed among these distances:
30 27 0.38
31 21 0.30
32 1 0.01
33 22 0.31
ACGTcount: A:0.23, C:0.30, G:0.18, T:0.30
Consensus pattern (31 bp):
AAAGTCCACGACTCAGTGGCATTTTGTCTTC
Found at i:57601 original size:25 final size:25
Alignment explanation
Indices: 57573--57631 Score: 82
Period size: 27 Copynumber: 2.3 Consensus size: 25
57563 AACTTTTTTT
*
57573 CATCTTTAAGTCCACAACTCCGTGG
1 CATCTTTAAGCCCACAACTCCGTGG
57598 CATCCGTTTAAGCCCACAACTCCGTGG
1 CAT-C-TTTAAGCCCACAACTCCGTGG
*
57625 CACCTTT
1 CATCTTT
57632 TTCTTTTTAA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
25 6 0.20
26 2 0.07
27 22 0.73
ACGTcount: A:0.22, C:0.36, G:0.15, T:0.27
Consensus pattern (25 bp):
CATCTTTAAGCCCACAACTCCGTGG
Found at i:57650 original size:34 final size:34
Alignment explanation
Indices: 57607--58601 Score: 1173
Period size: 34 Copynumber: 28.8 Consensus size: 34
57597 GCATCCGTTT
57607 AAGCCCACAACTCCGTGGCACCTTTTTCTTTTTA
1 AAGCCCACAACTCCGTGGCACCTTTTTCTTTTTA
57641 AAGCCCACAACTCCGTGGCACCTTTTTC-TTTTA
1 AAGCCCACAACTCCGTGGCACCTTTTTCTTTTTA
* *
57674 AAGCCCACAACTCTGTGGCACTCTTTTTCCCTTTTCA
1 AAGCCCACAACTCCGTGGCAC-CTTTTT--CTTTTTA
*
57711 AAGCCCACAACTCCGTGGCACCTTCTTCTTTTTA
1 AAGCCCACAACTCCGTGGCACCTTTTTCTTTTTA
*
57745 AAGCCCACAACTCCGTGGCACCTTCTTCTTTTTA
1 AAGCCCACAACTCCGTGGCACCTTTTTCTTTTTA
57779 AAGCCCACAACTCCGTGGCACCTTTTTC-TTTTA
1 AAGCCCACAACTCCGTGGCACCTTTTTCTTTTTA
*
57812 AAGCCCACAACTCTGTGGCACTCTTTTTCTTCTTTTCA
1 AAGCCCACAACTCCGTGGCAC-CTTTTTC-T-TTTT-A
*
57850 AAGCCCACAACTCCGTGGCACCTTCTTCTTTTTA
1 AAGCCCACAACTCCGTGGCACCTTTTTCTTTTTA
57884 AAGCCCACAACTCCGTGGCACCTTCTTT-TTTTTA
1 AAGCCCACAACTCCGTGGCACCTT-TTTCTTTTTA
57918 AAGCCCACAACTCCGTGGCACCTTTTTC-TTTTA
1 AAGCCCACAACTCCGTGGCACCTTTTTCTTTTTA
* *
57951 AAGCCCACAACTCTGTGGCACTCTTTTTCCCTTTTCA
1 AAGCCCACAACTCCGTGGCAC-CTTTTT--CTTTTTA
*
57988 AAGCCCACAACTCCGTGGCACCTTCTTCTTTTTA
1 AAGCCCACAACTCCGTGGCACCTTTTTCTTTTTA
*
58022 AAGCCCACAACTCCGTGGCACCTTCTTCTTTTTA
1 AAGCCCACAACTCCGTGGCACCTTTTTCTTTTTA
* *
58056 AAGCCCACAACTCCGTAGGCACTCTTTTTCCTTCT-
1 AAGCCCACAACTCCGT-GGCAC-CTTTTTCTTTTTA
* *
58091 AAGCCCACAACTCCGTGGCACTCTTTTTCCTTCT-
1 AAGCCCACAACTCCGTGGCAC-CTTTTTCTTTTTA
*
58125 AAGCCCACGACTCCGTGGCACC-----C-TTTT-
1 AAGCCCACAACTCCGTGGCACCTTTTTCTTTTTA
* * * *
58152 AAGTCCACGACTCCGTGGCACTCTTTTTCCTTCT-
1 AAGCCCACAACTCCGTGGCAC-CTTTTTCTTTTTA
*
58186 AAGCCCACAACTCCGTGGCACTCTTTTTTCCCTTTTA
1 AAGCCCACAACTCCGTGGCAC-C-TTTTT-CTTTTTA
*
58223 AAGCCCACAACTCCGTGGCACTTTTTTC-TTTTA
1 AAGCCCACAACTCCGTGGCACCTTTTTCTTTTTA
*
58256 AAGCCCACAACTCCGTGGCACTCTTTTT-TTCCCTTTT
1 AAGCCCACAACTCCGTGGCAC-CTTTTTCTT---TTTA
* * * **
58293 AAGTCCACAACTCCGTGGCATCTTTCTCCCTTCCTA
1 AAGCCCACAACTCCGTGGCACCTTT-T-TCTTTTTA
* * * *
58329 AAGCCCACACAAGTCGGTGGCAACCTTCTTCTTTTCA
1 AAG-CC-CACAACTCCGTGGC-ACCTTTTTCTTTTTA
*
58366 AAGCCCACAACTCCGTGGCACCTTCTTC-TTTTA
1 AAGCCCACAACTCCGTGGCACCTTTTTCTTTTTA
* *
58399 AAGCCCACAACTTCGTGGCACTCTTTTTTCCTTTTCA
1 AAGCCCACAACTCCGTGGCAC-C-TTTTT-CTTTTTA
**
58436 AAGCCCACAACTCCGTGGCACCTTTTTCCGTTTA
1 AAGCCCACAACTCCGTGGCACCTTTTTCTTTTTA
*
58470 AAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTCA
1 AAGCCCACAACTCCGTGGCAC-CTTTTT--CTTTTTA
*
58507 AAGCCCACAACTCCGTGGCACTTTTTTC-TTTTA
1 AAGCCCACAACTCCGTGGCACCTTTTTCTTTTTA
*
58540 AAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTT-
1 AAGCCCACAACTCCGTGGCAC-CTTTTT-CTTTTTA
* *
58575 AAGTCCACAACTCCGTGGCATCTTTTT
1 AAGCCCACAACTCCGTGGCACCTTTTT
58602 TCCTTCCCAA
Statistics
Matches: 852, Mismatches: 61, Indels: 96
0.84 0.06 0.10
Matches are distributed among these distances:
27 23 0.03
28 2 0.00
33 155 0.18
34 341 0.40
35 84 0.10
36 48 0.06
37 159 0.19
38 34 0.04
39 6 0.01
ACGTcount: A:0.20, C:0.35, G:0.12, T:0.33
Consensus pattern (34 bp):
AAGCCCACAACTCCGTGGCACCTTTTTCTTTTTA
Found at i:57724 original size:70 final size:69
Alignment explanation
Indices: 57450--58619 Score: 1213
Period size: 70 Copynumber: 17.2 Consensus size: 69
57440 GCATTTTGTC
* * * * *
57450 TCAAAGTCCACGACTCAGTGGCA-TTTTTTC-TTTAAAGCCCACAACTCCGTGGCAC-CTTGTTC
1 TCAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTC
57512 CTTT
66 CTTT
* * * * * *
57516 T--AAGTCCACGACTCCGTGGCACC-----CTTTTAAAGCCCACAATTCTGTGGAACTTTTTTTC
1 TCAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTC
*
57574 ATCTT
66 CT-TT
* * *
57579 T--AAGTCCACAACTCCGTGGCA-----TCCGTTT-AAGCCCACAACTCCGTGGCAC-CTTTTT-
1 TCAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTC
57634 CTTT
66 CTTT
* *
57638 TTAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTAAAGCCCACAACTCTGTGGCACTCTTTTTC
1 TCAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTAAAGCCCACAACTCCGTGGCACTCTTTTT-
57703 CCTTT
65 CCTTT
* *
57708 TCAAAGCCCACAACTCCGTGGCACCTTCTTCTTTTTAAAGCCCACAACTCCGTGGCAC-CTTCTT
1 TCAAAGCCCACAACTCCGTGGCACCTTTTTC-TTTTAAAGCCCACAACTCCGTGGCACTCTTTTT
57772 -CTTT
65 CCTTT
* *
57776 TTAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTAAAGCCCACAACTCTGTGGCACTCTTTTTC
1 TCAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTC
57841 TTCTTT
66 --CTTT
*
57847 TCAAAGCCCACAACTCCGTGGCACCTTCTTCTTTTTAAAGCCCACAACTCCGTGGCAC-CTTCTT
1 TCAAAGCCCACAACTCCGTGGCACCTTTTTC-TTTTAAAGCCCACAACTCCGTGGCACTCTT-TT
57911 T--TTT
64 TCCTTT
* *
57915 TTAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTAAAGCCCACAACTCTGTGGCACTCTTTTTC
1 TCAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTAAAGCCCACAACTCCGTGGCACTCTTTTT-
57980 CCTTT
65 CCTTT
* *
57985 TCAAAGCCCACAACTCCGTGGCACCTTCTTCTTTTTAAAGCCCACAACTCCGTGGCAC-CTTCTT
1 TCAAAGCCCACAACTCCGTGGCACCTTTTTC-TTTTAAAGCCCACAACTCCGTGGCACTCTTTTT
58049 -CTTT
65 CCTTT
* *
58053 TTAAAGCCCACAACTCCGTAGGCACTCTTTTTCCTTCT-AAGCCCACAACTCCGTGGCACTCTTT
1 TCAAAGCCCACAACTCCGT-GGCAC-CTTTTT-CTTTTAAAGCCCACAACTCCGTGGCACTCTTT
58117 TTCC--T
63 TTCCTTT
* * * *
58122 TCTAAGCCCACGACTCCGTGGCACC-----CTTTT-AAGTCCACGACTCCGTGGCACTCTTTTTC
1 TCAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTC
58181 C--T
66 CTTT
*
58183 TCTAAGCCCACAACTCCGTGGCACTCTTTTTTCCCTTTTAAAGCCCACAACTCCGTGGCACT-TT
1 TCAAAGCCCACAACTCCGTGGCAC-C-TTTTT--CTTTTAAAGCCCACAACTCCGTGGCACTCTT
58247 TTT-CTTT
62 TTTCCTTT
*
58254 T-AAAGCCCACAACTCCGTGGCACTCTTTTTTTCCCTTTT-AAGTCCACAACTCCGTGGCA-TCT
1 TCAAAGCCCACAACTCCGTGGCAC-C--TTTTT--CTTTTAAAGCCCACAACTCCGTGGCACTCT
* *
58316 TTCTCCCTT
61 TTTTCCTTT
* * * *
58325 CCTAAAGCCCACACAAGTCGGTGGCAACCTTCTTCTTTTCAAAGCCCACAACTCCGTGGCAC-CT
1 TC-AAAG-CC-CACAACTCCGTGGC-ACCTTTTTCTTTT-AAAGCCCACAACTCCGTGGCACTCT
*
58389 TCTT-CTTT
61 TTTTCCTTT
*
58397 T-AAAGCCCACAACTTCGTGGCACTCTTTTTTCCTTTTCAAAGCCCACAACTCCGTGGCAC-CTT
1 TCAAAGCCCACAACTCCGTGGCAC-C-TTTTT-CTTTT-AAAGCCCACAACTCCGTGGCACTCTT
*
58460 TTTCCGTT
62 TTTCCTTT
58468 T-AAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTCAAAGCCCACAACTCCGTGGCACT-TT
1 TCAAAGCCCACAACTCCGTGGCAC-CTTTTT--CTTTT-AAAGCCCACAACTCCGTGGCACTCTT
58531 TTT-CTTT
62 TTTCCTTT
*
58538 T-AAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTT-AAGTCCACAACTCCGTGGCA-TCTTT
1 TCAAAGCCCACAACTCCGTGGCAC-CTTTTT--CTTTTAAAGCCCACAACTCCGTGGCACTC-TT
*
58600 TTTCCTTC
62 TTTCCTTT
*
58608 CCAAAGCCCACA
1 TCAAAGCCCACA
58620 CAAGTCGGTG
Statistics
Matches: 963, Mismatches: 74, Indels: 129
0.83 0.06 0.11
Matches are distributed among these distances:
59 3 0.00
60 2 0.00
61 102 0.11
62 25 0.03
63 26 0.03
64 19 0.02
66 6 0.01
67 77 0.08
68 137 0.14
69 56 0.06
70 229 0.24
71 202 0.21
72 31 0.03
73 31 0.03
74 2 0.00
75 13 0.01
76 2 0.00
ACGTcount: A:0.20, C:0.34, G:0.12, T:0.33
Consensus pattern (69 bp):
TCAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTC
CTTT
Found at i:57804 original size:104 final size:104
Alignment explanation
Indices: 57607--58601 Score: 1168
Period size: 104 Copynumber: 9.6 Consensus size: 104
57597 GCATCCGTTT
*
57607 AAGCCCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCACAACTCCGTGGCAC-CTTTTTC-T
1 AAGCCCACAACTCCGTGGCACCTTCTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCTT
*
57670 TTTAAAGCCCACAACTCTGTGGCACTCTTTTTCCCTTTTCA
66 TTTAAAGCCCACAACTCCGTGGCAC-CTTTTT-CCTTTTCA
*
57711 AAGCCCACAACTCCGTGGCACCTTCTTCTTTTTAAAGCCCACAACTCCGTGGCAC-CTTCTTCTT
1 AAGCCCACAACTCCGTGGCACCTTCTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCTT
57775 TTTAAAGCCCACAACTCCGTGGCACCTTTTT-CTTTT-A
66 TTTAAAGCCCACAACTCCGTGGCACCTTTTTCCTTTTCA
* * *
57812 AAGCCCACAACTCTGTGGCACTCTTTTTCTTCTTTTCAAAGCCCACAACTCCGTGGCAC-CTTCT
1 AAGCCCACAACTCCGTGGCAC-C---TTCTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTTT
*
57876 TCTTTTTAAAGCCCACAACTCCGTGGCACCTTCTTT--TTTTTA
62 TCTTTTTAAAGCCCACAACTCCGTGGCACCTT-TTTCCTTTTCA
* *
57918 AAGCCCACAACTCCGTGGCACCTTTTTC-TTTTAAAGCCCACAACTCTGTGGCACTCTTTTTCCC
1 AAGCCCACAACTCCGTGGCACCTTCTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTTTT--C
* * *
57982 TTTTCAAAGCCCACAACTCCGTGGCACCTTCTT-CTTTTTA
64 TTTTTAAAGCCCACAACTCCGTGGCACCTTTTTCCTTTTCA
*
58022 AAGCCCACAACTCCGTGGCACCTTCTTCTTTTTAAAGCCCACAACTCCGTAGGCACTCTTTTTCC
1 AAGCCCACAACTCCGTGGCACCTTCTTCTTTTTAAAGCCCACAACTCCGT-GGCACTCTTTTTCT
* *
58087 TTCT-AAGCCCACAACTCCGTGGCACTCTTTTTCC--TTCT
65 TTTTAAAGCCCACAACTCCGTGGCAC-CTTTTTCCTTTTCA
* * * *
58125 AAGCCCACGACTCCGTGGCA-C--C--C-TTTT-AAGTCCACGACTCCGTGGCACTCTTTTTCCT
1 AAGCCCACAACTCCGTGGCACCTTCTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCTT
*
58183 TCT-AAGCCCACAACTCCGTGGCACTCTTTTTTCCCTTTT-A
66 TTTAAAGCCCACAACTCCGTGGCAC-C-TTTTT-CCTTTTCA
* *
58223 AAGCCCACAACTCCGTGGCACTTTTTTC-TTTTAAAGCCCACAACTCCGTGGCACTCTTTTT-TT
1 AAGCCCACAACTCCGTGGCACCTTCTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCTT
* * * * * *
58286 CCCTTTTAAGTCCACAACTCCGTGGCATCTTTCTCCCTTCCTA
66 ---TTTAAAGCCCACAACTCCGTGGCACCTTTTTCCTTTTC-A
* * * *
58329 AAGCCCACACAAGTCGGTGGCAACCTTCTTCTTTTCAAAGCCCACAACTCCGTGGCAC-CTTCTT
1 AAG-CC-CACAACTCCGTGGC-ACCTTCTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTTTT
*
58393 C-TTTTAAAGCCCACAACTTCGTGGCACTCTTTTTTCCTTTTCA
63 CTTTTTAAAGCCCACAACTCCGTGGCAC-C-TTTTTCCTTTTCA
* **
58436 AAGCCCACAACTCCGTGGCACCTTTTTCCGTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCC
1 AAGCCCACAACTCCGTGGCACCTTCTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTTTT--C
* *
58501 TTTTCAAAGCCCACAACTCCGTGGCA-CTTTTTTCTTTT-A
64 TTTTTAAAGCCCACAACTCCGTGGCACCTTTTTCCTTTTCA
* * *
58540 AAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTT-AAGTCCACAACTCCGTGGCA-TCTTTTT
1 AAGCCCACAACTCCGTGGCAC-CTTCTT-CTTTTTAAAGCCCACAACTCCGTGGCACTCTTTTT
58602 TCCTTCCCAA
Statistics
Matches: 786, Mismatches: 61, Indels: 88
0.84 0.07 0.09
Matches are distributed among these distances:
95 41 0.05
96 19 0.02
97 6 0.01
98 20 0.03
99 2 0.00
100 1 0.00
101 45 0.06
102 17 0.02
103 50 0.06
104 228 0.29
105 176 0.22
106 72 0.09
107 27 0.03
108 44 0.06
109 13 0.02
110 25 0.03
ACGTcount: A:0.20, C:0.35, G:0.12, T:0.33
Consensus pattern (104 bp):
AAGCCCACAACTCCGTGGCACCTTCTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCTT
TTTAAAGCCCACAACTCCGTGGCACCTTTTTCCTTTTCA
Found at i:58177 original size:27 final size:27
Alignment explanation
Indices: 58119--58178 Score: 93
Period size: 27 Copynumber: 2.2 Consensus size: 27
58109 CACTCTTTTT
*
58119 CCTTCTAAGCCCACGACTCCGTGGCAC
1 CCTTTTAAGCCCACGACTCCGTGGCAC
*
58146 CCTTTTAAGTCCACGACTCCGTGGCAC
1 CCTTTTAAGCCCACGACTCCGTGGCAC
*
58173 TCTTTT
1 CCTTTT
58179 TCCTTCTAAG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.17, C:0.38, G:0.17, T:0.28
Consensus pattern (27 bp):
CCTTTTAAGCCCACGACTCCGTGGCAC
Found at i:58640 original size:104 final size:99
Alignment explanation
Indices: 57452--58619 Score: 1025
Period size: 104 Copynumber: 11.4 Consensus size: 99
57442 ATTTTGTCTC
* * * *
57452 AAAGTCCACGACTCAGTGGCA-TTTTTT-CTTT-AAAGCCCACAACTCCGTGGCACCTTGTTCCT
1 AAAGCCCACAACTCCGTGGCACTTTTTTCCTTTCAAAGCCCACAACTCCGTGGCA-C-TCTT-CT
* *
57514 TTT-AAGTCCACGACTCCGTGGCA-C-----CCTTTT
63 TTTAAAGCCCACAACTCCGTGGCACCTTTTTCCTTTT
* * * * *
57544 AAAGCCCACAATTCTGTGGAACTTTTTTTCATCTTT--AAGTCCACAACTCCGTGGCA-TC--CG
1 AAAGCCCACAACTCCGTGGCAC-TTTTTTC--CTTTCAAAGCCCACAACTCCGTGGCACTCTTCT
*
57604 TTT-AAGCCCACAACTCCGTGGCACCTTTTTCTTTTT
63 TTTAAAGCCCACAACTCCGTGGCACCTTTTTCCTTTT
* * *
57640 AAAGCCCACAACTCCGTGGCACCTTTTT-CTTTTAAAGCCCACAACTCTGTGGCACTCTTTTTCC
1 AAAGCCCACAACTCCGTGGCACTTTTTTCCTTTCAAAGCCCACAACTCCGTGGCACTC---TT--
* *
57704 CTTTTCAAAGCCCACAACTCCGTGGCACCTTCTTCTTTTT
61 CTTTT-AAAGCCCACAACTCCGTGGCACCTTTTTCCTTTT
* * * * *
57744 AAAGCCCACAACTCCGTGGCACCTTCTTCTTTTTAAAGCCCACAACTCCGTGGCACCTTTTTCTT
1 AAAGCCCACAACTCCGTGGCACTTTTTTCCTTTCAAAGCCCACAACTCCGTGGCA-C-TCTTCTT
*
57809 TTAAAGCCCACAACTCTGTGGCACTCTTTTTCTTCTTTT
64 TTAAAGCCCACAACTCCGTGGCAC-CTTTTTC--CTTTT
* * * * *
57848 CAAAGCCCACAACTCCGTGGCACCTTCTTCTTTTTAAAGCCCACAACTCCGTGGCACCTTCTTTT
1 -AAAGCCCACAACTCCGTGGCACTTTTTTCCTTTCAAAGCCCACAACTCCGTGGCA-C-TC-TTC
57913 TTTTAAAGCCCACAACTCCGTGGCACCTTTTT-CTTTT
62 TTTTAAAGCCCACAACTCCGTGGCACCTTTTTCCTTTT
*
57950 AAAGCCCACAACTCTGTGGCACTCTTTTTCCCTTTTCAAAGCCCACAACTCCGTGGCACCTTCTT
1 AAAGCCCACAACTCCGTGGCACT-TTTTT-CC-TTTCAAAGCCCACAACTCCGTGGCA-C-TCTT
* *
58015 CTTTTTAAAGCCCACAACTCCGTGGCACCTTCTTCTTTTT
61 C-TTTTAAAGCCCACAACTCCGTGGCACCTTTTTCCTTTT
* *
58055 AAAGCCCACAACTCCGTAGGCACTCTTTTTCC-TTCTAAGCCCACAACTCCGTGGCACTCTTTTT
1 AAAGCCCACAACTCCGT-GGCACT-TTTTTCCTTTCAAAGCCCACAACTCCGTGGCACTCTTCTT
* *
58119 CCTTCTAAGCCCACGACTCCGTGGCA-C-----CCTTTT
64 --TT-AAAGCCCACAACTCCGTGGCACCTTTTTCCTTTT
* * *
58152 -AAGTCCACGACTCCGTGGCACTCTTTTTCC-TTCTAAGCCCACAACTCCGTGGCACTCTTTTTT
1 AAAGCCCACAACTCCGTGGCACT-TTTTTCCTTTCAAAGCCCACAACTCCGTGGCACTC----TT
*
58215 CCCTTTTAAAGCCCACAACTCCGTGGCA-CTTTTTTCTTTT
61 --CTTTTAAAGCCCACAACTCCGTGGCACCTTTTTCCTTTT
* *
58255 AAAGCCCACAACTCCGTGGCACTCTTTTTTTCCCTTT-TAAGTCCACAACTCCGTGGCA-TCTTT
1 AAAGCCCACAACTCCGTGGCA--C-TTTTTT-CCTTTCAAAGCCCACAACTCCGTGGCACTC-TT
* * *
58318 CTCCCTTCCTAAAGCCCACACAAGTCGGTGGCAACCTTCTT-CTTTT
61 CT---TT--TAAAG-CC-CACAACTCCGTGGC-ACCTTTTTCCTTTT
* * * *
58364 CAAAGCCCACAACTCCGTGGCACCTTCTT-CTTTTAAAGCCCACAACTTCGTGGCACTCTTTTTT
1 -AAAGCCCACAACTCCGTGGCACTTTTTTCCTTTCAAAGCCCACAACTCCGTGGCACTC----TT
*
58428 CCTTTTCAAAGCCCACAACTCCGTGGCACCTTTTTCCGTTT
61 -CTTTT-AAAGCCCACAACTCCGTGGCACCTTTTTCCTTTT
*
58469 AAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTCAAAGCCCACAACTCCGTGGCACTTTTTT
1 AAAGCCCACAACTCCGTGGCACT-TTTTT-CC-TTTCAAAGCCCACAACTCCGTGGCAC--TCTT
58534 CTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTT
61 CTTTTAAAGCCCACAACTCCGTGGCAC-CTTTTT-CCTTTT
* *
58575 -AAGTCCACAACTCCGTGGCATCTTTTTTCCTTCCCAAAGCCCACA
1 AAAGCCCACAACTCCGTGGCA-CTTTTTTCCTT-TCAAAGCCCACA
58620 CAAGTCGGTG
Statistics
Matches: 919, Mismatches: 72, Indels: 158
0.80 0.06 0.14
Matches are distributed among these distances:
90 22 0.02
91 1 0.00
92 20 0.02
93 1 0.00
94 24 0.03
95 48 0.05
96 57 0.06
97 9 0.01
98 20 0.02
99 4 0.00
100 2 0.00
101 50 0.05
102 28 0.03
103 55 0.06
104 209 0.23
105 170 0.18
106 83 0.09
107 37 0.04
108 41 0.04
109 6 0.01
110 30 0.03
111 2 0.00
ACGTcount: A:0.20, C:0.34, G:0.12, T:0.33
Consensus pattern (99 bp):
AAAGCCCACAACTCCGTGGCACTTTTTTCCTTTCAAAGCCCACAACTCCGTGGCACTCTTCTTTT
AAAGCCCACAACTCCGTGGCACCTTTTTCCTTTT
Found at i:58733 original size:43 final size:43
Alignment explanation
Indices: 58673--58939 Score: 336
Period size: 43 Copynumber: 5.9 Consensus size: 43
58663 GCAACCCCTC
* *
58673 TAAGCCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTT
* *
58716 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCA----C--CTT
*
58765 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTT
* *
58808 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTTTCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCA-C-----CTT
*
58857 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTT
* *
58900 TAAGTCCAATATAGCAGGCCTTGAATCAGCATATTGGCAC
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCAC
58940 ATTTTCCATC
Statistics
Matches: 196, Mismatches: 16, Indels: 24
0.83 0.07 0.10
Matches are distributed among these distances:
43 114 0.58
44 1 0.01
45 1 0.01
47 1 0.01
48 1 0.01
49 78 0.40
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (43 bp):
TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTT
Found at i:58785 original size:49 final size:48
Alignment explanation
Indices: 58673--59048 Score: 332
Period size: 43 Copynumber: 7.9 Consensus size: 48
58663 GCAACCCCTC
* *
58673 TAAGCCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C-CTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCATCTTCTCTT
* *
58716 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCATCTTC-TCTT
*
58765 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C-CTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCATCTTCTCTT
* * * *
58808 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTTTCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCATC-TTCTCTT
*
58857 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C-CTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCATCTTCTCTT
* * *
58900 TAAGTCCAATATAGCAGGCCTTGAATCAGCATATTGGCACATTTTCCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGG--CATCTT-C-TCTT
** * *
58952 TAAGTTTAATGTAGCTGGCCTTGAATCAGCACATTGACATCCTTTTCTCATCAT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCAT-C--TTCTC-T--T
* * * * * *
59006 TAAGCCCAATATCGTTGGCCGTGAATCAACATATTGGCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCATCTT
59049 TATCACTTTT
Statistics
Matches: 271, Mismatches: 35, Indels: 46
0.77 0.10 0.13
Matches are distributed among these distances:
43 111 0.41
45 3 0.01
47 1 0.00
49 78 0.29
50 4 0.01
51 4 0.01
52 36 0.13
53 3 0.01
54 31 0.11
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.32
Consensus pattern (48 bp):
TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCATCTTCTCTT
Found at i:58835 original size:92 final size:92
Alignment explanation
Indices: 58673--58996 Score: 522
Period size: 92 Copynumber: 3.5 Consensus size: 92
58663 GCAACCCCTC
*
58673 TAAGCCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCGCTGGCCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCGCTGGCCTT
58738 GAATCAGCATATTGGCATCTTCATCTT
66 GAATCAGCATATTGGCATCTTCATCTT
58765 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCGCTGGCCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCGCTGGCCTT
* **
58830 GAATCAGCATATTGGCACCTTTTTCTT
66 GAATCAGCATATTGGCATCTTCATCTT
* *
58857 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATAGCAGGCCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCGCTGGCCTT
*
58922 GAATCAGCATATTGGCACATTTTCCATCTT
66 GAATCAGCATATTGG--CATCTT-CATCTT
** *
58952 TAAGTTTAATGTAGCTGGCCTTGAATCAGCACATTGACATCCTTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA-CCTTT
58997 TCTCATCATT
Statistics
Matches: 215, Mismatches: 13, Indels: 4
0.93 0.06 0.02
Matches are distributed among these distances:
92 166 0.77
94 4 0.02
95 40 0.19
96 5 0.02
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.32
Consensus pattern (92 bp):
TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCGCTGGCCTT
GAATCAGCATATTGGCATCTTCATCTT
Found at i:59107 original size:67 final size:68
Alignment explanation
Indices: 58999--59125 Score: 175
Period size: 67 Copynumber: 1.9 Consensus size: 68
58989 CATCCTTTTC
* * *
58999 TCATCATTAAGCCCAATATCGTTGGCCGTGAATCAACATATTGGCATCTTTATCA-CTTTTCTCA
1 TCATCATTAAGCCCAATATCGCTGGCCGTGAATCAACATATTGGCACCTTCATCATCTTTTCTCA
59063 TCT
66 TCT
* * * * *
59066 TCATCTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATATTGGCACCTTCATCATCTTT
1 TCATCATTAAGCCCAATATCGCTGGCCGTGAATCAACATATTGGCACCTTCATCATCTTT
59126 AAAACCCAAT
Statistics
Matches: 51, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
67 47 0.92
68 4 0.08
ACGTcount: A:0.24, C:0.25, G:0.13, T:0.38
Consensus pattern (68 bp):
TCATCATTAAGCCCAATATCGCTGGCCGTGAATCAACATATTGGCACCTTCATCATCTTTTCTCA
TCT
Found at i:59885 original size:33 final size:33
Alignment explanation
Indices: 59848--59914 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
59838 TTCAACGATT
59848 TGTATCGATACATAAAATATTGTATCGATACAA
1 TGTATCGATACATAAAATATTGTATCGATACAA
*** *
59881 TGTATCGATACATATTTTTTTGTATCGATACAA
1 TGTATCGATACATAAAATATTGTATCGATACAA
59914 T
1 T
59915 TTAAGCTACT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.36, C:0.12, G:0.12, T:0.40
Consensus pattern (33 bp):
TGTATCGATACATAAAATATTGTATCGATACAA
Found at i:59886 original size:13 final size:13
Alignment explanation
Indices: 59868--59892 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
59858 CATAAAATAT
59868 TGTATCGATACAA
1 TGTATCGATACAA
59881 TGTATCGATACA
1 TGTATCGATACA
59893 TATTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:59976 original size:13 final size:13
Alignment explanation
Indices: 59958--59982 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
59948 ATTACTCACA
59958 TGTATCGATACAT
1 TGTATCGATACAT
59971 TGTATCGATACA
1 TGTATCGATACA
59983 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:60118 original size:52 final size:52
Alignment explanation
Indices: 59991--60121 Score: 217
Period size: 52 Copynumber: 2.5 Consensus size: 52
59981 CACTGATCTT
* *
59991 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACATTATAAAA
1 TGTATCGATACATGCAGGCAAATTTTCCCAGATGTATCGATACACTATAAAA
*
60043 TGTATCGATACATGCAGGCAAATTTTCCCAGATGTATCGATACACTATTAAA
1 TGTATCGATACATGCAGGCAAATTTTCCCAGATGTATCGATACACTATAAAA
**
60095 TGTATCGATACATGCAGATAAATTTTC
1 TGTATCGATACATGCAGGCAAATTTTC
60122 ATATTTCGGG
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 74 1.00
ACGTcount: A:0.35, C:0.18, G:0.16, T:0.31
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTTCCCAGATGTATCGATACACTATAAAA
Found at i:65327 original size:1 final size:1
Alignment explanation
Indices: 65317--65410 Score: 80
Period size: 1 Copynumber: 94.0 Consensus size: 1
65307 TGGCAATTGG
* * * ** * * * **
65317 AAAAAGAAAAAAACAAAACAAAAAAAAGGAAAAAGAAAAAAAAAAACAAAACAAAAAAAAAGGAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* *
65382 AAAGAAAAAAAAAAAAACAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAA
65411 GTGAAGATTT
Statistics
Matches: 73, Mismatches: 20, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
1 73 1.00
ACGTcount: A:0.87, C:0.05, G:0.07, T:0.00
Consensus pattern (1 bp):
A
Found at i:65374 original size:34 final size:34
Alignment explanation
Indices: 65318--65411 Score: 149
Period size: 34 Copynumber: 2.8 Consensus size: 34
65308 GGCAATTGGA
65318 AAAAGAAAAAAACAAAAC-AAAAAAAAGGAAAAAG
1 AAAA-AAAAAAACAAAACAAAAAAAAAGGAAAAAG
65352 AAAAAAAAAAACAAAACAAAAAAAAAGGAAAAAG
1 AAAAAAAAAAACAAAACAAAAAAAAAGGAAAAAG
65386 AAAAAAAAAAA-AACAA-AAAAAAAAAG
1 AAAAAAAAAAACAA-AACAAAAAAAAAG
65412 TGAAGATTTG
Statistics
Matches: 58, Mismatches: 0, Indels: 5
0.92 0.00 0.08
Matches are distributed among these distances:
33 25 0.43
34 33 0.57
ACGTcount: A:0.86, C:0.05, G:0.09, T:0.00
Consensus pattern (34 bp):
AAAAAAAAAAACAAAACAAAAAAAAAGGAAAAAG
Found at i:68688 original size:28 final size:28
Alignment explanation
Indices: 68656--68738 Score: 157
Period size: 28 Copynumber: 3.0 Consensus size: 28
68646 CAAATGCCAC
68656 CCTTTGTATTTGTCAAATATGGTGGTTT
1 CCTTTGTATTTGTCAAATATGGTGGTTT
68684 CCTTTGTATTTGTCAAATATGGTGGTTT
1 CCTTTGTATTTGTCAAATATGGTGGTTT
*
68712 CCTTTGTATTTGTCAAATATAGTGGTT
1 CCTTTGTATTTGTCAAATATGGTGGTT
68739 ATTTTTTATT
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
28 54 1.00
ACGTcount: A:0.19, C:0.11, G:0.20, T:0.49
Consensus pattern (28 bp):
CCTTTGTATTTGTCAAATATGGTGGTTT
Found at i:69756 original size:13 final size:13
Alignment explanation
Indices: 69740--69773 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
69730 AAATTATGTT
*
69740 ATAAAATAAATTA
1 ATAAAATAAATGA
69753 ATAAAATAAATGA
1 ATAAAATAAATGA
69766 ATTAAAAT
1 A-TAAAAT
69774 TTAAATAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 13 0.68
14 6 0.32
ACGTcount: A:0.68, C:0.00, G:0.03, T:0.29
Consensus pattern (13 bp):
ATAAAATAAATGA
Found at i:69860 original size:30 final size:30
Alignment explanation
Indices: 69799--69882 Score: 90
Period size: 30 Copynumber: 3.0 Consensus size: 30
69789 AAAATAATAT
* *
69799 TATATTTTTATT-ATTTATG---TAATTAC
1 TATATTTTTATTAATTTATGTTATAATAAA
69825 T-TATTTTTAATTAA-TTATGTTATAATAAA
1 TATATTTTT-ATTAATTTATGTTATAATAAA
*
69854 TATATTTTTATTAATTTATTTTATAATAA
1 TATATTTTTATTAATTTATGTTATAATAA
69883 TAAATTTACT
Statistics
Matches: 48, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
25 7 0.15
26 9 0.19
27 1 0.02
29 11 0.23
30 20 0.42
ACGTcount: A:0.37, C:0.01, G:0.02, T:0.60
Consensus pattern (30 bp):
TATATTTTTATTAATTTATGTTATAATAAA
Found at i:69889 original size:15 final size:15
Alignment explanation
Indices: 69826--69889 Score: 53
Period size: 15 Copynumber: 4.3 Consensus size: 15
69816 TGTAATTACT
69826 TATTTT-TAATTAAT-
1 TATTTTATAA-TAATA
*
69840 TATGTTATAATAAATA
1 TATTTTATAAT-AATA
* *
69856 TATTTT-TATTAATT
1 TATTTTATAATAATA
69870 TATTTTATAATAATA
1 TATTTTATAATAATA
*
69885 AATTT
1 TATTT
69890 ACTAATTATA
Statistics
Matches: 39, Mismatches: 7, Indels: 7
0.74 0.13 0.13
Matches are distributed among these distances:
14 15 0.38
15 19 0.49
16 5 0.13
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.58
Consensus pattern (15 bp):
TATTTTATAATAATA
Found at i:70244 original size:17 final size:17
Alignment explanation
Indices: 70222--70262 Score: 57
Period size: 16 Copynumber: 2.5 Consensus size: 17
70212 TTGTATTTTA
**
70222 AAATTATTTTTTTATTT
1 AAATTATTTTTAAATTT
70239 AAATTA-TTTTAAATTT
1 AAATTATTTTTAAATTT
70255 AAATTATT
1 AAATTATT
70263 AAATTTGACA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
16 14 0.67
17 7 0.33
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (17 bp):
AAATTATTTTTAAATTT
Found at i:71654 original size:21 final size:22
Alignment explanation
Indices: 71626--71676 Score: 68
Period size: 22 Copynumber: 2.4 Consensus size: 22
71616 TAGGGTATTG
* *
71626 ATACTTTATGGTA-AAGTATCT
1 ATACTTTATGGCACAAGTATCA
*
71647 ATATTTTATGGCACAAGTATCA
1 ATACTTTATGGCACAAGTATCA
71669 ATACTTTA
1 ATACTTTA
71677 GTTAAAAACC
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
21 11 0.44
22 14 0.56
ACGTcount: A:0.35, C:0.12, G:0.12, T:0.41
Consensus pattern (22 bp):
ATACTTTATGGCACAAGTATCA
Found at i:71924 original size:27 final size:27
Alignment explanation
Indices: 71867--71928 Score: 79
Period size: 27 Copynumber: 2.3 Consensus size: 27
71857 CCACACATTG
* * ** *
71867 AATTTTTTGTTAATCTTTTATGTATAT
1 AATTTTTAGTTAAACTTTTATACATAA
71894 AATTTTTAGTTAAACTTTTATACATAA
1 AATTTTTAGTTAAACTTTTATACATAA
71921 AATTTTTA
1 AATTTTTA
71929 ATTTAACATT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.34, C:0.05, G:0.05, T:0.56
Consensus pattern (27 bp):
AATTTTTAGTTAAACTTTTATACATAA
Found at i:72016 original size:28 final size:27
Alignment explanation
Indices: 71978--72047 Score: 70
Period size: 26 Copynumber: 2.6 Consensus size: 27
71968 TAATTAACTC
* *
71978 TCACATATGGAATTTTTTTTTAAACTTT
1 TCACATGTGGAATTTTTTATTAAA-TTT
* *
72006 TCACTTGTGGAA-ATTTTATTAAATTT
1 TCACATGTGGAATTTTTTATTAAATTT
* *
72032 TTACATGTGAAATTTT
1 TCACATGTGGAATTTT
72048 CAATTAAACA
Statistics
Matches: 33, Mismatches: 8, Indels: 3
0.75 0.18 0.07
Matches are distributed among these distances:
26 12 0.36
27 11 0.33
28 10 0.30
ACGTcount: A:0.30, C:0.09, G:0.10, T:0.51
Consensus pattern (27 bp):
TCACATGTGGAATTTTTTATTAAATTT
Found at i:72053 original size:27 final size:28
Alignment explanation
Indices: 71997--72081 Score: 106
Period size: 27 Copynumber: 3.1 Consensus size: 28
71987 GAATTTTTTT
* *
71997 TTAAACTTTTCACTTGTGGAAATTTT--A
1 TTAAACTTTTTACATGT-GAAATTTTCAA
72024 TTAAA-TTTTTACATGTGAAATTTTCAA
1 TTAAACTTTTTACATGTGAAATTTTCAA
*
72051 TTAAACATTTTACATGT-AAATTTTCAA
1 TTAAACTTTTTACATGTGAAATTTTCAA
72078 TTAA
1 TTAA
72082 GCTTATCAAT
Statistics
Matches: 52, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
25 8 0.15
26 9 0.17
27 25 0.48
28 10 0.19
ACGTcount: A:0.36, C:0.09, G:0.07, T:0.47
Consensus pattern (28 bp):
TTAAACTTTTTACATGTGAAATTTTCAA
Found at i:72065 original size:28 final size:27
Alignment explanation
Indices: 71936--72081 Score: 104
Period size: 27 Copynumber: 5.4 Consensus size: 27
71926 TTAATTTAAC
* *
71936 ATTTTTAATTAAACTTTTGCATGT-ACA
1 ATTTTCAATTAAACTTTTACATGTGA-A
* * * * * *
71963 TTTTTTAATT-AACTCTCACATATGGA
1 ATTTTCAATTAAACTTTTACATGTGAA
*** *
71989 ATTTTTTTTTAAACTTTTCACTTGTGGAA
1 ATTTTCAATTAAACTTTT-ACATGT-GAA
*
72018 ATTTT--ATTAAATTTTTACATGTGAA
1 ATTTTCAATTAAACTTTTACATGTGAA
72043 ATTTTCAATTAAACATTTTACATGT-AA
1 ATTTTCAATTAAAC-TTTTACATGTGAA
72070 ATTTTCAATTAA
1 ATTTTCAATTAA
72082 GCTTATCAAT
Statistics
Matches: 94, Mismatches: 18, Indels: 14
0.75 0.14 0.11
Matches are distributed among these distances:
25 8 0.09
26 22 0.23
27 43 0.46
28 14 0.15
29 7 0.07
ACGTcount: A:0.34, C:0.10, G:0.07, T:0.49
Consensus pattern (27 bp):
ATTTTCAATTAAACTTTTACATGTGAA
Found at i:82906 original size:13 final size:13
Alignment explanation
Indices: 82888--82914 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
82878 ACAAAGATCA
82888 AATGTATCGATAC
1 AATGTATCGATAC
82901 AATGTATCGATAC
1 AATGTATCGATAC
82914 A
1 A
82915 TTGAGTAATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
AATGTATCGATAC
Found at i:88735 original size:20 final size:20
Alignment explanation
Indices: 88684--88737 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 20
88674 AAGTACCCGG
* * *
88684 ATGTATCGATAGATTTTTCA
1 ATGTATCGATATATGTATCA
* *
88704 ATGTATCAATATATGTATGA
1 ATGTATCGATATATGTATCA
88724 ATGTATCGATATAT
1 ATGTATCGATATAT
88738 TCTGTCTTTT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.35, C:0.07, G:0.15, T:0.43
Consensus pattern (20 bp):
ATGTATCGATATATGTATCA
Found at i:94582 original size:19 final size:19
Alignment explanation
Indices: 94558--94596 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
94548 TCGAGTGGCT
94558 AAAGAGAGGGATAACTTCA
1 AAAGAGAGGGATAACTTCA
94577 AAAGAGAGGGATAACTTCA
1 AAAGAGAGGGATAACTTCA
94596 A
1 A
94597 GTAAAGATTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.49, C:0.10, G:0.26, T:0.15
Consensus pattern (19 bp):
AAAGAGAGGGATAACTTCA
Found at i:104482 original size:13 final size:13
Alignment explanation
Indices: 104464--104491 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
104454 ATACATTATT
104464 CAATGTATCGATA
1 CAATGTATCGATA
104477 CAATGTATCGATA
1 CAATGTATCGATA
104490 CA
1 CA
104492 TTGAATAATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.39, C:0.18, G:0.14, T:0.29
Consensus pattern (13 bp):
CAATGTATCGATA
Found at i:104488 original size:33 final size:33
Alignment explanation
Indices: 104446--104508 Score: 101
Period size: 33 Copynumber: 1.9 Consensus size: 33
104436 GATTTCCCGG
*
104446 ATGTATCGATACATT-ATTCAATGTATCGATACA
1 ATGTATCGATACATTGAAT-AATGTATCGATACA
104479 ATGTATCGATACATTGAATAATGTATCGAT
1 ATGTATCGATACATTGAATAATGTATCGAT
104509 GCATTTCCTT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
33 26 0.93
34 2 0.07
ACGTcount: A:0.37, C:0.13, G:0.14, T:0.37
Consensus pattern (33 bp):
ATGTATCGATACATTGAATAATGTATCGATACA
Found at i:105450 original size:49 final size:48
Alignment explanation
Indices: 105289--106286 Score: 701
Period size: 49 Copynumber: 21.8 Consensus size: 48
105279 CGAAGAATGA
* * ** * * * *
105289 CAATGTGCTGATTCATGGCCAATGACATTAGACTTGAAGAAGAA-TGC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATGAAGTGC
* ** * * * * *
105336 CAATGTGCTGAGACAAGGCCAGCAACATTGGGCTAAGGAACGTTAAAGATGC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGTCTTA--AA-GATGAAG-TGC
* * * * *
105388 CAATATGCTGATTCAAGGCCAACGATATTAGACTTAAAGATGAAAGTAC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATG-AAGTGC
* * * *
105437 CAATGTGCTGATTCAAGGCCAGCGACATCGGACTTAAAGAAGAACGTGC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATGAA-GTGC
* * * *
105486 CAATATGCTGATTCAGGGCCAGCAACATTGGACATAAAGATGGTTAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGAT-G--AA-GTGC
* * * *
105538 CAATGTGTTGATTCAAGGCCAACGACATCGGTCTTAAAGATGAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATGAA-GTGC
* * *
105587 CAATATGCTGATTCAAGGCCAGCGATATTGG-------GCT--CGTGC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATGAAGTGC
* *
105626 CAATGTGCTGATTCAAGGCTAGCGACATTGGTCTTAAAGATGAAAGTGC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATG-AAGTGC
* * * *
105675 CAATATGCTGATTCATGGCTAGCGATATTGGGC-T-----T---GTGC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATGAAGTGC
* *
105714 CAATGTGCTGATTAAAGGCCAGCGACATTGGTCTTAAAGATGAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATGAA-GTGC
* * *
105763 CAATATGCTGATTCATGGCCAGCGATATTGGGC-T-----T---GTGC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATGAAGTGC
*
105802 CAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATGAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATGAA-GTGC
* * * *
105851 CAATATGCTGATTCATGGCCAGTGATATTGGGC-T-----T---GTGC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATGAAGTGC
*
105890 CAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATGAAGTGC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATGAAGTGC
* *
105938 CAATATGCTGATTCAAGGCCAGCGATATTGGGC-T-----T---GTGC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATGAAGTGC
* *
105977 CAATGTGCTGATTCAAGGCTAGCGACATTGGTCTTAAAGATGAAAGTGC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATG-AAGTGC
*
106026 CAATATGCTGATTCAAGGCCAGCGATATTGGTC-T-----T--A-TGC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATGAAGTGC
* * *
106065 CAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAGAGACATG--GCGC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGTCTTA-A-AGATGAAGTGC
* * *
106113 CAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAGAGA-CAAGGCGC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATGAA-GTGC
* *
106161 CAATATGCTGATTCAAGGCCAGCGATATTGGGC-T-----T--A-TGC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATGAAGTGC
* * *
106200 CAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAACGA-CAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATGAA-GTGC
* * *
106248 CAATATGCTGATTCAAGGCCAACGATATTGGACTTAAAG
1 CAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAAAG
106287 GTGCCACAGA
Statistics
Matches: 752, Mismatches: 116, Indels: 165
0.73 0.11 0.16
Matches are distributed among these distances:
39 227 0.30
40 7 0.01
41 1 0.00
42 3 0.00
43 4 0.01
45 4 0.01
46 5 0.01
47 29 0.04
48 149 0.20
49 244 0.32
50 9 0.01
51 1 0.00
52 69 0.09
ACGTcount: A:0.29, C:0.19, G:0.26, T:0.25
Consensus pattern (48 bp):
CAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATGAAGTGC
Found at i:105550 original size:150 final size:148
Alignment explanation
Indices: 105289--105611 Score: 396
Period size: 150 Copynumber: 2.2 Consensus size: 148
105279 CGAAGAATGA
* ** * * *
105289 CAATGTGCTGATTCATGGCCAATGACATTAGACTTGAAGAAGAATGCCAATGTGCTGAGACAAGG
1 CAATGTGCTGATTCAAGGCCAGCGACATCAGACTTAAAGAAGAATGCCAATATGCTGAGACAAGG
* * * *
105354 CCAGCAACATTGGGCTAAGGAACGTTAAAGATGCCAATATGCTGATTCAAGGCCAACGATATTAG
66 CCAGCAACATTGGACTAAAGAACGTTAAAGATGCCAATATGCTGATTCAAGGCCAACGACATCAG
105419 ACTTAAAGATGAAAGTAC
131 ACTTAAAGATGAAAGTAC
* ** *
105437 CAATGTGCTGATTCAAGGCCAGCGACATCGGACTTAAAGAAGAACGTGCCAATATGCTGATTCAG
1 CAATGTGCTGATTCAAGGCCAGCGACATCAGACTTAAAGAAGAA--TGCCAATATGCTGAGACAA
** * * *
105502 GGCCAGCAACATTGGACATAAAGATGGTT-AAGGTGCCAATGTGTTGATTCAAGGCCAACGACAT
64 GGCCAGCAACATTGGAC-TAAAGAACGTTAAAGATGCCAATATGCTGATTCAAGGCCAACGACAT
* * * *
105566 CGGTCTTAAAGATGAAGGTGC
128 CAGACTTAAAGATGAAAGTAC
*
105587 CAATATGCTGATTCAAGGCCAGCGA
1 CAATGTGCTGATTCAAGGCCAGCGA
105612 TATTGGGCTC
Statistics
Matches: 148, Mismatches: 24, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
148 38 0.26
150 102 0.69
151 8 0.05
ACGTcount: A:0.34, C:0.19, G:0.25, T:0.22
Consensus pattern (148 bp):
CAATGTGCTGATTCAAGGCCAGCGACATCAGACTTAAAGAAGAATGCCAATATGCTGAGACAAGG
CCAGCAACATTGGACTAAAGAACGTTAAAGATGCCAATATGCTGATTCAAGGCCAACGACATCAG
ACTTAAAGATGAAAGTAC
Found at i:105558 original size:101 final size:98
Alignment explanation
Indices: 105385--106048 Score: 314
Period size: 88 Copynumber: 7.3 Consensus size: 98
105375 ACGTTAAAGA
* * * *
105385 TGCCAATATGCTGATTCAAGGCCAACGATATTAGACTTAAAGATGAAAGTACCAATGTGCTGATT
1 TGCCAATATGCTGATTCAAGGCCAGCAACATTAGACATAAAGATGAAAGTACCAATGTGCTGATT
*
105450 CAAGGCCAGCGACATCGGACTTAAAGAAGAACG
66 CAAGGCCAACGACATCGGACTTAAAGAAGAACG
* * * * *
105483 TGCCAATATGCTGATTCAGGGCCAGCAACATTGGACATAAAGATGGTTAAGGTGCCAATGTGTTG
1 TGCCAATATGCTGATTCAAGGCCAGCAACATTAGACATAAAGAT-G--AAAGTACCAATGTGCTG
* * *
105548 ATTCAAGGCCAACGACATCGGTCTTAAAGATGAAGG
63 ATTCAAGGCCAACGACATCGGACTTAAAGAAGAACG
* * * * *
105584 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGGC-T--CG-T----G--CCAATGTGCTGATT
1 TGCCAATATGCTGATTCAAGGCCAGCAACATTAGACATAAAGATGAAAGTACCAATGTGCTGATT
* * * * * *
105639 CAAGGCTAGCGACATTGGTCTTAAAGATGAAAG
66 CAAGGCCAACGACATCGGACTTAAAGAAGAACG
* * * * * * *
105672 TGCCAATATGCTGATTCATGGCTAGCGATATTGGGC-T-----T----GTGCCAATGTGCTGATT
1 TGCCAATATGCTGATTCAAGGCCAGCAACATTAGACATAAAGATGAAAGTACCAATGTGCTGATT
* * * * * *
105727 AAAGGCCAGCGACATTGGTCTTAAAGATGAAGG
66 CAAGGCCAACGACATCGGACTTAAAGAAGAACG
* * * * * *
105760 TGCCAATATGCTGATTCATGGCCAGCGATATTGGGC-T-----T----GTGCCAATGTGCTGATT
1 TGCCAATATGCTGATTCAAGGCCAGCAACATTAGACATAAAGATGAAAGTACCAATGTGCTGATT
* * * * *
105815 CAAGGCCAGCGACATTGGTCTTAAAGATGAAGG
66 CAAGGCCAACGACATCGGACTTAAAGAAGAACG
* ** * * * *
105848 TGCCAATATGCTGATTCATGGCCAGTGATATTGGGC-T-----T----GTGCCAATGTGCTGATT
1 TGCCAATATGCTGATTCAAGGCCAGCAACATTAGACATAAAGATGAAAGTACCAATGTGCTGATT
* * * *
105903 CAAGGCCAGCGACATTGGTCTTAAAGATGAA-G
66 CAAGGCCAACGACATCGGACTTAAAGAAGAACG
* * * * *
105935 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGGC-T-----T----GTGCCAATGTGCTGATT
1 TGCCAATATGCTGATTCAAGGCCAGCAACATTAGACATAAAGATGAAAGTACCAATGTGCTGATT
* * * * * *
105990 CAAGGCTAGCGACATTGGTCTTAAAGATGAAAG
66 CAAGGCCAACGACATCGGACTTAAAGAAGAACG
106023 TGCCAATATGCTGATTCAAGGCCAGC
1 TGCCAATATGCTGATTCAAGGCCAGC
106049 GATATTGGTC
Statistics
Matches: 526, Mismatches: 34, Indels: 22
0.90 0.06 0.04
Matches are distributed among these distances:
86 2 0.00
87 84 0.16
88 319 0.61
90 1 0.00
97 1 0.00
98 39 0.07
99 1 0.00
100 1 0.00
101 78 0.15
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.26
Consensus pattern (98 bp):
TGCCAATATGCTGATTCAAGGCCAGCAACATTAGACATAAAGATGAAAGTACCAATGTGCTGATT
CAAGGCCAACGACATCGGACTTAAAGAAGAACG
Found at i:105637 original size:39 final size:39
Alignment explanation
Indices: 105583--106230 Score: 387
Period size: 39 Copynumber: 14.9 Consensus size: 39
105573 AAAGATGAAG
* *
105583 GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTC
1 GTGCCAATATGCTGATTCAAGGCCAGCGACATTGGGCTT
* * *
105622 GTGCCAATGTGCTGATTCAAGGCTAGCGACATTGGTCTTAAAGAT
1 GTGCCAATATGCTGATTCAAGGCCAGCGACATTGGGC-T-----T
* * *
105667 GAAAGTGCCAATATGCTGATTCATGGCTAGCGATATTGGGCTT
1 ----GTGCCAATATGCTGATTCAAGGCCAGCGACATTGGGCTT
* * *
105710 GTGCCAATGTGCTGATTAAAGGCCAGCGACATTGGTCTTAAAGAT
1 GTGCCAATATGCTGATTCAAGGCCAGCGACATTGGGC-T-----T
* *
105755 GAAGGTGCCAATATGCTGATTCATGGCCAGCGATATTGGGCTT
1 ----GTGCCAATATGCTGATTCAAGGCCAGCGACATTGGGCTT
* *
105798 GTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGAT
1 GTGCCAATATGCTGATTCAAGGCCAGCGACATTGGGC-T-----T
* * *
105843 GAAGGTGCCAATATGCTGATTCATGGCCAGTGATATTGGGCTT
1 ----GTGCCAATATGCTGATTCAAGGCCAGCGACATTGGGCTT
* *
105886 GTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGAT
1 GTGCCAATATGCTGATTCAAGGCCAGCGACATTGGGC-T-----T
*
105931 GAAGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTT
1 ---GTGCCAATATGCTGATTCAAGGCCAGCGACATTGGGCTT
* * *
105973 GTGCCAATGTGCTGATTCAAGGCTAGCGACATTGGTCTTAAAGAT
1 GTGCCAATATGCTGATTCAAGGCCAGCGACATTGGGC-T-----T
* *
106018 GAAAGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGTCTT
1 ----GTGCCAATATGCTGATTCAAGGCCAGCGACATTGGGCTT
* * *
106061 ATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTT
1 GTGCCAATATGCTGATTCAAGGCCAGCGACATTGGGCTT
*
106100 AGAGACATGGCGCCAATATGCTGATTCAAGGCCAGCGACATTGGTCTT
1 ---G---T---GCCAATATGCTGATTCAAGGCCAGCGACATTGGGCTT
* *
106148 AGAGACAAGGCGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTT
1 ---------GTGCCAATATGCTGATTCAAGGCCAGCGACATTGGGCTT
* *
106196 ATGCCAATGTGCTGATTCAAGGCCAGCGACATTGG
1 GTGCCAATATGCTGATTCAAGGCCAGCGACATTGG
106231 TCTTAACGAC
Statistics
Matches: 487, Mismatches: 58, Indels: 128
0.72 0.09 0.19
Matches are distributed among these distances:
39 229 0.47
40 5 0.01
42 1 0.00
43 4 0.01
45 5 0.01
47 1 0.00
48 109 0.22
49 131 0.27
54 2 0.00
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.27
Consensus pattern (39 bp):
GTGCCAATATGCTGATTCAAGGCCAGCGACATTGGGCTT
Found at i:105683 original size:88 final size:88
Alignment explanation
Indices: 105534--106143 Score: 1017
Period size: 88 Copynumber: 7.0 Consensus size: 88
105524 GATGGTTAAG
* * *
105534 GTGCCAATGTGTTGATTCAAGGCCAACGACATCGGTCTTAAAGATGAAGGTGCCAATATGCTGAT
1 GTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATGAAGGTGCCAATATGCTGAT
*
105599 TCAAGGCCAGCGATATTGGGCTC
66 TCAAGGCCAGCGATATTGGGCTT
* *
105622 GTGCCAATGTGCTGATTCAAGGCTAGCGACATTGGTCTTAAAGATGAAAGTGCCAATATGCTGAT
1 GTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATGAAGGTGCCAATATGCTGAT
* *
105687 TCATGGCTAGCGATATTGGGCTT
66 TCAAGGCCAGCGATATTGGGCTT
*
105710 GTGCCAATGTGCTGATTAAAGGCCAGCGACATTGGTCTTAAAGATGAAGGTGCCAATATGCTGAT
1 GTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATGAAGGTGCCAATATGCTGAT
*
105775 TCATGGCCAGCGATATTGGGCTT
66 TCAAGGCCAGCGATATTGGGCTT
105798 GTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATGAAGGTGCCAATATGCTGAT
1 GTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATGAAGGTGCCAATATGCTGAT
* *
105863 TCATGGCCAGTGATATTGGGCTT
66 TCAAGGCCAGCGATATTGGGCTT
105886 GTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATGAA-GTGCCAATATGCTGAT
1 GTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATGAAGGTGCCAATATGCTGAT
105950 TCAAGGCCAGCGATATTGGGCTT
66 TCAAGGCCAGCGATATTGGGCTT
* *
105973 GTGCCAATGTGCTGATTCAAGGCTAGCGACATTGGTCTTAAAGATGAAAGTGCCAATATGCTGAT
1 GTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATGAAGGTGCCAATATGCTGAT
*
106038 TCAAGGCCAGCGATATTGGTCTT
66 TCAAGGCCAGCGATATTGGGCTT
* * * * *
106061 ATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAGAGA-CATGGCGCCAATATGCTGAT
1 GTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATGAAGGTGCCAATATGCTGAT
*
106125 TCAAGGCCAGCGACATTGG
66 TCAAGGCCAGCGATATTGG
106144 TCTTAGAGAC
Statistics
Matches: 495, Mismatches: 26, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
87 118 0.24
88 377 0.76
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.27
Consensus pattern (88 bp):
GTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATGAAGGTGCCAATATGCTGAT
TCAAGGCCAGCGATATTGGGCTT
Found at i:105957 original size:48 final size:46
Alignment explanation
Indices: 105886--106286 Score: 367
Period size: 48 Copynumber: 8.9 Consensus size: 46
105876 TATTGGGCTT
*
105886 GTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATGAA
1 GTGCCAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGAT--A
* *
105934 GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGGC-T-----T-
1 GTGCCAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATA
* *
105973 GTGCCAATGTGCTGATTCAAGGCTAGCGACATTGGTCTTAAAGATGAAA
1 GTGCCAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGAT---A
*
106022 GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGTC-T-----TA
1 GTGCCAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATA
* * *
106062 -TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAGAGACATG
1 GTGCCAATATGCTGATTCAAGGCCAGCGACATTGGTCTTA-A-AGATA
* * *
106109 GCGCCAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAGAGACAA
1 GTGCCAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGA-TA
* * *
106156 GGCGCCAATATGCTGATTCAAGGCCAGCGATATTGGGC-T-----TA
1 -GTGCCAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATA
* * *
106197 -TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAACGACAA
1 GTGCCAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGA-TA
* * *
106243 GGTGCCAATATGCTGATTCAAGGCCAACGATATTGGACTTAAAG
1 -GTGCCAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAAAG
106287 GTGCCACAGA
Statistics
Matches: 291, Mismatches: 32, Indels: 60
0.76 0.08 0.16
Matches are distributed among these distances:
39 99 0.34
40 4 0.01
41 1 0.00
42 1 0.00
43 1 0.00
45 1 0.00
46 3 0.01
47 3 0.01
48 144 0.49
49 34 0.12
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.25
Consensus pattern (46 bp):
GTGCCAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATA
Found at i:106197 original size:135 final size:136
Alignment explanation
Indices: 105975--106286 Score: 493
Period size: 135 Copynumber: 2.3 Consensus size: 136
105965 TTGGGCTTGT
* * * *
105975 GCCAATGTGCTGATTCAAGGCTAGCGACATTGGTCTTAAAGATGAAAGTGCCAATATGCTGATTC
1 GCCAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATCAAAGCGCCAATATGCTGATTC
*
106040 AAGGCCAGCGATATTGGTCTTATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAGA-G
66 AAGGCCAGCGATATTGGGCTTATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTA-ACG
*
106104 ACATGGC
130 ACAAGGC
* *
106111 GCCAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAGAGA-CAAGGCGCCAATATGCTGATTC
1 GCCAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATCAAAGCGCCAATATGCTGATTC
106175 AAGGCCAGCGATATTGGGCTTATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAACGA
66 AAGGCCAGCGATATTGGGCTTATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAACGA
*
106240 CAAGGT
131 CAAGGC
* * *
106246 GCCAATATGCTGATTCAAGGCCAACGATATTGGACTTAAAG
1 GCCAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAAAG
106287 GTGCCACAGA
Statistics
Matches: 162, Mismatches: 13, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
134 1 0.01
135 122 0.75
136 39 0.24
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (136 bp):
GCCAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATCAAAGCGCCAATATGCTGATTC
AAGGCCAGCGATATTGGGCTTATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAACGA
CAAGGC
Found at i:106202 original size:87 final size:87
Alignment explanation
Indices: 106111--106283 Score: 294
Period size: 87 Copynumber: 2.0 Consensus size: 87
106101 GAGACATGGC
106111 GCCAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAGA-GACAAGGCGCCAATATGCTGATTC
1 GCCAATATGCTGATTCAAGGCCAGCGACATTGGTCTTA-ACGACAAGGCGCCAATATGCTGATTC
* *
106175 AAGGCCAGCGATATTGGGCTTAT
65 AAGGCCAACGATATTGGACTTAT
* *
106198 GCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAACGACAAGGTGCCAATATGCTGATTCA
1 GCCAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAACGACAAGGCGCCAATATGCTGATTCA
106263 AGGCCAACGATATTGGACTTA
66 AGGCCAACGATATTGGACTTA
106284 AAGGTGCCAC
Statistics
Matches: 81, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
86 1 0.01
87 80 0.99
ACGTcount: A:0.28, C:0.22, G:0.25, T:0.24
Consensus pattern (87 bp):
GCCAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAACGACAAGGCGCCAATATGCTGATTCA
AGGCCAACGATATTGGACTTAT
Found at i:106326 original size:34 final size:33
Alignment explanation
Indices: 106283--106896 Score: 623
Period size: 33 Copynumber: 18.8 Consensus size: 33
106273 TATTGGACTT
* *
106283 AAAGGTGCCACAGAGTTGTGGACTT-ACAGGAA
1 AAAGGTGCCACGGAGTTGTGGACTTAAAAGGAA
* *
106315 AAAGGGATGCCACGGAGGTGTGGGCTTCAAAAGGAA
1 AAA-GG-TGCCACGGAGTTGTGGACTT-AAAAGGAA
* *
106351 AAAGGTGCCACGGAGTCGTGGACTTAAAAAG-A
1 AAAGGTGCCACGGAGTTGTGGACTTAAAAGGAA
* *
106383 AAATGTGTCACGGAGTTGTGGACTTAAAA-GAA
1 AAAGGTGCCACGGAGTTGTGGACTTAAAAGGAA
*
106415 ACAAGGTACCACGGAGTTGTGGACTTAAAAGGAA
1 A-AAGGTGCCACGGAGTTGTGGACTTAAAAGGAA
* *
106449 AAAGGGATGCCACGGAGGTGTGGGCTTAAAAGGGAA
1 AAA-GG-TGCCACGGAGTTGTGGACTTAAAA-GGAA
* * ** * *
106485 AAGGGTGCCATGGAGTCATGGAGTTTAAA--AA
1 AAAGGTGCCACGGAGTTGTGGACTTAAAAGGAA
* *
106516 AAAGGATGCCACAGAGTTGTGGACTTAAAGGGAA
1 AAAGG-TGCCACGGAGTTGTGGACTTAAAAGGAA
*
106550 AAAGATGCCACGGAGTTGTGGACTTAAAAGGAA
1 AAAGGTGCCACGGAGTTGTGGACTTAAAAGGAA
* * * * *
106583 AAAGATGGCACAGAGTTGTGGGCTTTAAAAAGAA
1 AAAGGTGCCACGGAGTTGTGGAC-TTAAAAGGAA
106617 AAAGGTGCCACGGAGTTGTGGACTT------AA
1 AAAGGTGCCACGGAGTTGTGGACTTAAAAGGAA
* * *
106644 AAATGTGCCACGGAGTTATGGACTTTGAAAGGAA
1 AAAGGTGCCACGGAGTTGTGGAC-TTAAAAGGAA
* *
106678 CAAGGTGCCACAGAGTTGTGGACTTAAAAGGAA
1 AAAGGTGCCACGGAGTTGTGGACTTAAAAGGAA
* * * *
106711 AAAGATGCCACGGATTTGTGGGCTTTAAAAAGAA
1 AAAGGTGCCACGGAGTTGTGGAC-TTAAAAGGAA
*
106745 AAATGTGCCACGGAGTTGTGGACTTAAAAGGAA
1 AAAGGTGCCACGGAGTTGTGGACTTAAAAGGAA
*
106778 AAAGATGCCACGGAGTTGTGGACTTAAAA-G--
1 AAAGGTGCCACGGAGTTGTGGACTTAAAAGGAA
*
106808 ---GGTGCCACGGAGTTGTGGACTTTGAAAGGAA
1 AAAGGTGCCACGGAGTTGTGGAC-TTAAAAGGAA
*
106839 CAAGGTGCCACGGAGTTGTGGACTTAAAAGGAA
1 AAAGGTGCCACGGAGTTGTGGACTTAAAAGGAA
* * * *
106872 GAAGATGTCACCGAGTTGTGGACTT
1 AAAGGTGCCACGGAGTTGTGGACTT
106897 TGAGAAGAGA
Statistics
Matches: 482, Mismatches: 71, Indels: 57
0.79 0.12 0.09
Matches are distributed among these distances:
27 42 0.09
28 7 0.01
29 1 0.00
31 7 0.01
32 50 0.10
33 175 0.36
34 160 0.33
35 25 0.05
36 15 0.03
ACGTcount: A:0.35, C:0.13, G:0.32, T:0.20
Consensus pattern (33 bp):
AAAGGTGCCACGGAGTTGTGGACTTAAAAGGAA
Found at i:106433 original size:33 final size:32
Alignment explanation
Indices: 106283--107023 Score: 560
Period size: 34 Copynumber: 22.8 Consensus size: 32
106273 TATTGGACTT
* * *
106283 AAAGGTGCCACAGAGTTGTGGACTTACAGGAA
1 AAAGGTGCCACGGAGTTGTGGACTTAAAAGAA
* *
106315 AAAGGGATGCCACGGAGGTGTGGGCTTCAAAAGGAA
1 AAA-GG-TGCCACGGAGTTGTGGACTT-AAAA-GAA
*
106351 AAAGGTGCCACGGAGTCGTGGACTTAAAA-AGA
1 AAAGGTGCCACGGAGTTGTGGACTTAAAAGA-A
* *
106383 AAATGTGTCACGGAGTTGTGGACTTAAAAGAA
1 AAAGGTGCCACGGAGTTGTGGACTTAAAAGAA
*
106415 ACAAGGTACCACGGAGTTGTGGACTTAAAAGGAA
1 A-AAGGTGCCACGGAGTTGTGGACTTAAAA-GAA
* *
106449 AAAGGGATGCCACGGAGGTGTGGGCTTAAAAGGGAA
1 AAA-GG-TGCCACGGAGTTGTGGACTTAAAA--GAA
* * ** * *
106485 AAGGGTGCCATGGAGTCATGGAGTTTAAA-AA
1 AAAGGTGCCACGGAGTTGTGGACTTAAAAGAA
* *
106516 AAAGGATGCCACAGAGTTGTGGACTTAAAGGGAA
1 AAAGG-TGCCACGGAGTTGTGGACTTAAA-AGAA
*
106550 AAAGATGCCACGGAGTTGTGGACTTAAAAGGAA
1 AAAGGTGCCACGGAGTTGTGGACTTAAAA-GAA
* * * *
106583 AAAGATGGCACAGAGTTGTGGGCTTTAAAAAGAA
1 AAAGGTGCCACGGAGTTGTGGAC-TT-AAAAGAA
106617 AAAGGTGCCACGGAGTTGTGGACTT-----AA
1 AAAGGTGCCACGGAGTTGTGGACTTAAAAGAA
* * *
106644 AAATGTGCCACGGAGTTATGGACTTTGAAAGGAA
1 AAAGGTGCCACGGAGTTGTGGAC-TT-AAAAGAA
* *
106678 CAAGGTGCCACAGAGTTGTGGACTTAAAAGGAA
1 AAAGGTGCCACGGAGTTGTGGACTTAAAA-GAA
* * *
106711 AAAGATGCCACGGATTTGTGGGCTTTAAAAAGAA
1 AAAGGTGCCACGGAGTTGTGGAC-TT-AAAAGAA
*
106745 AAATGTGCCACGGAGTTGTGGACTTAAAAGGAA
1 AAAGGTGCCACGGAGTTGTGGACTTAAAA-GAA
*
106778 AAAGATGCCACGGAGTTGTGGACTTAAAAG--
1 AAAGGTGCCACGGAGTTGTGGACTTAAAAGAA
*
106808 ---GGTGCCACGGAGTTGTGGACTTTGAAAGGAA
1 AAAGGTGCCACGGAGTTGTGGAC-TT-AAAAGAA
*
106839 CAAGGTGCCACGGAGTTGTGGACTTAAAAGGAA
1 AAAGGTGCCACGGAGTTGTGGACTTAAAA-GAA
* * * * **
106872 GAAGATGTCACCGAGTTGTGGACTT-TGAG-A
1 AAAGGTGCCACGGAGTTGTGGACTTAAAAGAA
* * ** **
106902 AGAGATTGCCATTGAG-TGTGGACTTTGAAG-A
1 AAAG-GTGCCACGGAGTTGTGGACTTAAAAGAA
* * * *
106933 AAAGATGCCACTGAGTCGTGGACTTTGAAAATAA
1 AAAGGTGCCACGGAGTTGTGGAC-TT-AAAAGAA
* * ** * **
106967 AAAAGTGCCACAGAGTCATAGACTTTGAAGAA
1 AAAGGTGCCACGGAGTTGTGGACTTAAAAGAA
* * *
106999 AAAGATGCCACTGAGTCGTGGACTT
1 AAAGGTGCCACGGAGTTGTGGACTT
107024 TGAGAAGAGA
Statistics
Matches: 569, Mismatches: 98, Indels: 84
0.76 0.13 0.11
Matches are distributed among these distances:
27 42 0.07
28 4 0.01
29 4 0.01
30 21 0.04
31 27 0.05
32 87 0.15
33 166 0.29
34 171 0.30
35 35 0.06
36 12 0.02
ACGTcount: A:0.35, C:0.13, G:0.31, T:0.21
Consensus pattern (32 bp):
AAAGGTGCCACGGAGTTGTGGACTTAAAAGAA
Found at i:106537 original size:66 final size:65
Alignment explanation
Indices: 106283--106896 Score: 506
Period size: 67 Copynumber: 9.4 Consensus size: 65
106273 TATTGGACTT
* * * * *
106283 AAAGGTGCCACAGAGTTGTGGACTTACAGGAAAAAGGGATGCCACGGAGGTGTGGGCTTCAAAAG
1 AAAGGTGCCACGGAGTCGTGGACTTA-A-AAAAAAAGGATGCCACGGAGTTGTGGGCTT-AAAAG
106348 GAA
63 GAA
* * *
106351 AAAGGTGCCACGGAGTCGTGGACTTAAAAAGAAAATG-TGTCACGGAGTTGTGGACTTAAAA-GA
1 AAAGGTGCCACGGAGTCGTGGACTTAAAAA-AAAAGGATGCCACGGAGTTGTGGGCTTAAAAGGA
106414 A
65 A
* * *
106415 ACAAGGTACCACGGAGTTGTGGACTTAAAAGGAAAAAGGGATGCCACGGAGGTGTGGGCTTAAAA
1 A-AAGGTGCCACGGAGTCGTGGACTTAAAA--AAAAA-GGATGCCACGGAGTTGTGGGCTTAAAA
106480 GGGAA
62 -GGAA
* * * * * * * *
106485 AAGGGTGCCATGGAGTCATGGAGTTTAAAAAAAAGGATGCCACAGAGTTGTGGACTTAAAGGGAA
1 AAAGGTGCCACGGAGTCGTGGACTTAAAAAAAAAGGATGCCACGGAGTTGTGGGCTTAAAAGGAA
* * * * *
106550 AAAGATGCCACGGAGTTGTGGACTTAAAAGGAAAAA-GATGGCACAGAGTTGTGGGCTTTAAAAA
1 AAAGGTGCCACGGAGTCGTGGACTTAAAA--AAAAAGGATGCCACGGAGTTGTGGGC-TTAAAAG
106614 GAA
63 GAA
* * * * *
106617 AAAGGTGCCACGGAGTTGTGGACTT----AAAAATG-TGCCACGGAGTTATGGACTTTGAAAGGA
1 AAAGGTGCCACGGAGTCGTGGACTTAAAAAAAAAGGATGCCACGGAGTTGTGGGC-TTAAAAGGA
106677 A
65 A
* * * * *
106678 CAAGGTGCCACAGAGTTGTGGACTTAAAAGGAAAAA-GATGCCACGGATTTGTGGGCTTTAAAAA
1 AAAGGTGCCACGGAGTCGTGGACTTAAAA--AAAAAGGATGCCACGGAGTTGTGGGC-TTAAAAG
106742 GAA
63 GAA
* * *
106745 AAATGTGCCACGGAGTTGTGGACTTAAAAGGAAAAA-GATGCCACGGAGTTGTGGACTTAAAA-G
1 AAAGGTGCCACGGAGTCGTGGACTTAAAA--AAAAAGGATGCCACGGAGTTGTGGGCTTAAAAGG
106808 --
64 AA
* * * *
106808 ---GGTGCCACGGAGTTGTGGACTTTGAAAGGAACAAGG-TGCCACGGAGTTGTGGACTTAAAAG
1 AAAGGTGCCACGGAGTCGTGGAC-TT-AAA-AAAAAAGGATGCCACGGAGTTGTGGGCTTAAAAG
106869 GAA
63 GAA
* * * * *
106872 GAAGATGTCACCGAGTTGTGGACTT
1 AAAGGTGCCACGGAGTCGTGGACTT
106897 TGAGAAGAGA
Statistics
Matches: 456, Mismatches: 61, Indels: 60
0.79 0.11 0.10
Matches are distributed among these distances:
60 19 0.04
61 81 0.18
62 6 0.01
64 4 0.01
65 57 0.12
66 73 0.16
67 146 0.32
68 45 0.10
69 21 0.05
70 4 0.01
ACGTcount: A:0.35, C:0.13, G:0.32, T:0.20
Consensus pattern (65 bp):
AAAGGTGCCACGGAGTCGTGGACTTAAAAAAAAAGGATGCCACGGAGTTGTGGGCTTAAAAGGAA
Found at i:106714 original size:161 final size:158
Alignment explanation
Indices: 106283--106896 Score: 669
Period size: 161 Copynumber: 3.8 Consensus size: 158
106273 TATTGGACTT
* * * * **
106283 AAAGGTGCCACAGAGTTGTGGACTTACAGGAAAAAGGGATGCCACGGAGGTGTGGGCTTCAAAAG
1 AAAGGTGCCACGGAGTTGTGGACTT-----AAAAA-GG-TGCCACGGAGTTATGGACTTTGAAAG
* * * * *
106348 GAAAAAGGTGCCACGGAGTCGTGGACTTAAAAAGAAAATG-TGTCACGGAGTTGTGGACTTAAAA
59 GAAAAAGGTGCCACAGAGTTGTGGACTTAAAAGGAAAAAGATGCCACGGAGTTGTGGACTTAAAA
*
106412 GAAACAAGGTACCACGGAGTTGTGGACTTAAAAGGAA
124 GAAA-AA-GTGCCACGGAGTTGTGGACTTAAAAGGAA
* * * * *
106449 AAAGGGATGCCACGGAGGTGTGGGCTTAAAAGGGAAAAGGGTGCCATGGAGTCATGGAGTTT-AA
1 AAA-GG-TGCCACGGAGTTGTGGACTT---A---AAAA-GGTGCCACGGAGTTATGGACTTTGAA
*
106513 A--AAAAAGGATGCCACAGAGTTGTGGACTTAAAGGGAAAAAGATGCCACGGAGTTGTGGACTTA
57 AGGAAAAAGG-TGCCACAGAGTTGTGGACTTAAAAGGAAAAAGATGCCACGGAGTTGTGGACTTA
* * * *
106576 AAAGGAAAAAGATGGCACAGAGTTGTGGGCTTTAAAAAGAA
121 AAA-GAAAAAG-TGCCACGGAGTTGTGGAC-TTAAAAGGAA
* *
106617 AAAGGTGCCACGGAGTTGTGGACTTAAAAATGTGCCACGGAGTTATGGACTTTGAAAGGAACAAG
1 AAAGGTGCCACGGAGTTGTGGACTTAAAAAGGTGCCACGGAGTTATGGACTTTGAAAGGAAAAAG
* *
106682 GTGCCACAGAGTTGTGGACTTAAAAGGAAAAAGATGCCACGGATTTGTGGGCTTTAAAAAGAAAA
66 GTGCCACAGAGTTGTGGACTTAAAAGGAAAAAGATGCCACGGAGTTGTGGAC-TT-AAAAGAAAA
106747 ATGTGCCACGGAGTTGTGGACTTAAAAGGAA
129 A-GTGCCACGGAGTTGTGGACTTAAAAGGAA
* * * *
106778 AAAGATGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTTGAAAGGAACAAG
1 AAAGGTGCCACGGAGTTGTGGACTTAAAAAGGTGCCACGGAGTTATGGACTTTGAAAGGAAAAAG
* * * *
106843 GTGCCACGGAGTTGTGGACTTAAAAGGAAGAAGATGTCACCGAGTTGTGGACTT
66 GTGCCACAGAGTTGTGGACTTAAAAGGAAAAAGATGCCACGGAGTTGTGGACTT
106897 TGAGAAGAGA
Statistics
Matches: 385, Mismatches: 47, Indels: 38
0.82 0.10 0.08
Matches are distributed among these distances:
159 19 0.05
160 9 0.02
161 164 0.43
162 29 0.08
163 6 0.02
165 7 0.02
166 51 0.13
167 46 0.12
168 47 0.12
169 7 0.02
ACGTcount: A:0.35, C:0.13, G:0.32, T:0.20
Consensus pattern (158 bp):
AAAGGTGCCACGGAGTTGTGGACTTAAAAAGGTGCCACGGAGTTATGGACTTTGAAAGGAAAAAG
GTGCCACAGAGTTGTGGACTTAAAAGGAAAAAGATGCCACGGAGTTGTGGACTTAAAAGAAAAAG
TGCCACGGAGTTGTGGACTTAAAAGGAA
Found at i:106850 original size:61 final size:60
Alignment explanation
Indices: 106749--106869 Score: 206
Period size: 61 Copynumber: 2.0 Consensus size: 60
106739 AAAGAAAAAT
106749 GTGCCACGGAGTTGTGGACTTAAAAGGAAAAAGATGCCACGGAGTTGTGGACTTAAAAGG
1 GTGCCACGGAGTTGTGGACTTAAAAGGAAAAAGATGCCACGGAGTTGTGGACTTAAAAGG
* * *
106809 GTGCCACGGAGTTGTGGACTTTGAAAGGAACAAGGTGCCACGGAGTTGTGGACTTAAAAGG
1 GTGCCACGGAGTTGTGGAC-TTAAAAGGAAAAAGATGCCACGGAGTTGTGGACTTAAAAGG
106870 AAGAAGATGT
Statistics
Matches: 57, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
60 19 0.33
61 38 0.67
ACGTcount: A:0.31, C:0.14, G:0.35, T:0.21
Consensus pattern (60 bp):
GTGCCACGGAGTTGTGGACTTAAAAGGAAAAAGATGCCACGGAGTTGTGGACTTAAAAGG
Found at i:106942 original size:94 final size:93
Alignment explanation
Indices: 106283--107053 Score: 461
Period size: 94 Copynumber: 7.9 Consensus size: 93
106273 TATTGGACTT
* * **
106283 AAAGGTGCCACAGAGTTGTGGAC-TTACAGGAAAAAGGGATGCCACGGAGGTGTGGGCTTCAAAA
1 AAAGATGCCACAGAGTTGTGGACTTTA-A-G-AAAA--GATGCCACGGA-GTGTGGACTT-TGAA
* * *
106347 GGAAAAAGGTGCCACGGAGTCGTGGACTTAAAAAGAA
59 -G-AAAAGATGCCACGGAGTTGTGGACTTAAAAGGAA
* * * * * * **
106384 AATG-TGTCACGGAGTTGTGGACTTAAAAGAAACAAGGTACCACGGAGTTGTGGACTTAAAAGGA
1 AAAGATGCCACAGAGTTGTGGACTT-TAAG-AA-AAGATGCCACGGAG-TGTGGACTTTGAA-G-
* *
106448 AAAAGGGATGCCACGGAGGTGTGGGCTTAAAAGGGAA
60 AAAA--GATGCCACGGAGTTGTGGACTTAAAA-GGAA
* * ** ** * * * *
106485 AAGGGTGCCATGGAGTCATGGAGTTTAAAAAAAAGGATGCCACAGAGTTGTGGAC-TTAAAGGGA
1 AAAGATGCCACAGAGTTGTGGACTTT-AAGAAAA-GATGCCACGGAG-TGTGGACTTTGAA--G-
106549 AAAAGATGCCACGGAGTTGTGGACTTAAAAGGAA
60 AAAAGATGCCACGGAGTTGTGGACTTAAAAGGAA
* * *
106583 AAAGATGGCACAGAGTTGTGGGCTTTAAAAAGAAAAAGGTGCCACGGAGTTGTGGAC-TT-AA-A
1 AAAGATGCCACAGAGTTGTGGACTTT---AAG-AAAAGATGCCACGGAG-TGTGGACTTTGAAGA
* * *
106645 AATG-TGCCACGGAGTTATGGACTTTGAAAGGAA
61 AAAGATGCCACGGAGTTGTGGAC-TTAAAAGGAA
* * * * * *
106678 CAAGGTGCCACAGAGTTGTGGACTTAAAAGGAAAAAGATGCCACGGATTTGTGGGCTTTAAAAAG
1 AAAGATGCCACAGAGTTGTGGACTT-TAA-G-AAAAGATGCCACGGA-GTGTGGACTTT--GAAG
106743 AAAA-ATGTGCCACGGAGTTGTGGACTTAAAAGGAA
60 AAAAGA--TGCCACGGAGTTGTGGACTTAAAAGGAA
* * *
106778 AAAGATGCCACGGAGTTGTGGAC-TT-A-AAAGGGTGCCACGGAGTTGTGGACTTTGAAAGGAAC
1 AAAGATGCCACAGAGTTGTGGACTTTAAGAAAAGATGCCACGGAG-TGTGGACTTTG-AA-GAA-
*
106840 AAGGTGCCACGGAGTTGTGGACTTAAAAGGAA
62 AAGATGCCACGGAGTTGTGGACTTAAAAGGAA
* * * * * **
106872 GAAGATGTCACCGAGTTGTGGACTTTGAGAAGAGATTGCCATTGAGTGTGGACTTTGAAGAAAAG
1 AAAGATGCCACAGAGTTGTGGACTTTAAGAAAAGA-TGCCACGGAGTGTGGACTTTGAAGAAAAG
* * **
106937 ATGCCACTGAGTCGTGGACTTTGAAAATAAA
65 ATGCCACGGAGTTGTGGAC-TT-AAAAGGAA
** * * *
106968 AAAG-TGCCACAGAGTCATAGACTTTGAAGAAAAAGATGCCACTGAGTCGTGGACTTTG-AGAAG
1 AAAGATGCCACAGAGTTGTGGACTTT-AAG-AAAAGATGCCACGGAGT-GTGGACTTTGAAGAAA
** *
107031 AGATGCCATTGAGTCGTGGACTT
63 AGATGCCACGGAGTTGTGGACTT
107054 TGAGAAGAGA
Statistics
Matches: 544, Mismatches: 86, Indels: 86
0.76 0.12 0.12
Matches are distributed among these distances:
93 4 0.01
94 131 0.24
95 63 0.12
96 48 0.09
97 30 0.06
98 43 0.08
99 47 0.09
100 100 0.18
101 60 0.11
102 18 0.03
ACGTcount: A:0.35, C:0.13, G:0.31, T:0.21
Consensus pattern (93 bp):
AAAGATGCCACAGAGTTGTGGACTTTAAGAAAAGATGCCACGGAGTGTGGACTTTGAAGAAAAGA
TGCCACGGAGTTGTGGACTTAAAAGGAA
Found at i:106954 original size:128 final size:128
Alignment explanation
Indices: 106283--107056 Score: 540
Period size: 128 Copynumber: 6.0 Consensus size: 128
106273 TATTGGACTT
* * * * * * *
106283 AAAGGTGCCACAGAGTTGTGGACTT-ACAGGAAAAAGGGATGCCACGGAGGTGTGGGCTTCAAAA
1 AAAGATGCCACGGAGTTGTGGACTTAAAAGGAAAAA--GATGCCACAGAGTTGTGGACTTTAAAA
* * * * * * * **
106347 GGAAAAAGGTGCCACGGAGTCGTGGAC-TTAAAAAGAAAATGTGTCACGGAGTTGTGGACTTAAA
64 AGAAAAAGATGCCACGGAGTTGTGGACTTTGAGAAG-AGA--TGCCACGGAGTTGTGGACTTTGA
106411 AGAA
126 AG-A
* * * * *
106415 ACAAGGTACCACGGAGTTGTGGACTTAAAAGGAAAAAGGGATGCCACGGAGGTGTGGGC-TTAAA
1 A-AAGATGCCACGGAGTTGTGGACTTAAAAGGAAAAA--GATGCCACAGAGTTGTGGACTTTAAA
* * * * ** * * * * * *
106479 AGGGAAAAGGGTGCCATGGAGTCATGGAGTTTAAAAAAAAGGATGCCACAGAGTTGTGGAC-TTA
63 A-AGAAAAAGATGCCACGGAGTTGTGGACTTT-GAGAAGA-GATGCCACGGAGTTGTGGACTTTG
106543 AAGGGAA
125 AA--G-A
* *
106550 AAAGATGCCACGGAGTTGTGGACTTAAAAGGAAAAAGATGGCACAGAGTTGTGGGCTTTAAAAAG
1 AAAGATGCCACGGAGTTGTGGACTTAAAAGGAAAAAGATGCCACAGAGTTGTGGACTTTAAAAAG
* * *
106615 AAAAAGGTGCCACGGAGTTGTGGAC-TT-A-AAAATG-TGCCACGGAGTTATGGACTTTGAAAGG
66 AAAAAGATGCCACGGAGTTGTGGACTTTGAGAAGA-GATGCCACGGAGTTGTGGACTTTG-AA-G
106676 A
128 A
* * * * *
106677 ACAAGGTGCCACAGAGTTGTGGACTTAAAAGGAAAAAGATGCCACGGATTTGTGGGCTTTAAAAA
1 A-AAGATGCCACGGAGTTGTGGACTTAAAAGGAAAAAGATGCCACAGAGTTGTGGACTTTAAAAA
** *
106742 GAAAAATG-TGCCACGGAGTTGTGGACTTAAAAGGAAAAAGATGCCACGGAGTTGTGGAC-TT--
65 GAAAAA-GATGCCACGGAGTTGTGGACTT-TGA-G-AAGAGATGCCACGGAGTTGTGGACTTTGA
106803 A-A
126 AGA
* * * * * * *
106805 AAGGGTGCCACGGAGTTGTGGACTTTGAAAGGAACAAGGTGCCACGGAGTTGTGGAC-TTAAAAG
1 AAAGATGCCACGGAGTTGTGGAC-TTAAAAGGAAAAAGATGCCACAGAGTTGTGGACTTTAAAAA
* * * **
106869 GAAGAAGATGTCACCGAGTTGTGGACTTTGAGAAGAGATTGCCATTGAG-TGTGGACTTTGAAGA
65 GAAAAAGATGCCACGGAGTTGTGGACTTTGAGAAGAGA-TGCCACGGAGTTGTGGACTTTGAAGA
* * ** ** * *
106933 AAAGATGCCACTGAGTCGTGGACTTTGAAAATAAAAAAG-TGCCACAGAGTCATAGACTTT--GA
1 AAAGATGCCACGGAGTTGTGGAC-TT-AAAAGGAAAAAGATGCCACAGAGTTGTGGACTTTAAAA
* * ** *
106995 AGAAAAAGATGCCACTGAGTCGTGGACTTTGAGAAGAGATGCCATTGAGTCGTGGACTTTGA
64 AGAAAAAGATGCCACGGAGTTGTGGACTTTGAGAAGAGATGCCACGGAGTTGTGGACTTTGA
107057 GAAGAGAGAT
Statistics
Matches: 542, Mismatches: 70, Indels: 65
0.80 0.10 0.10
Matches are distributed among these distances:
124 12 0.02
125 11 0.02
126 12 0.02
127 114 0.21
128 158 0.29
129 15 0.03
130 1 0.00
131 3 0.01
132 39 0.07
133 40 0.07
134 124 0.23
135 7 0.01
136 6 0.01
ACGTcount: A:0.35, C:0.13, G:0.31, T:0.21
Consensus pattern (128 bp):
AAAGATGCCACGGAGTTGTGGACTTAAAAGGAAAAAGATGCCACAGAGTTGTGGACTTTAAAAAG
AAAAAGATGCCACGGAGTTGTGGACTTTGAGAAGAGATGCCACGGAGTTGTGGACTTTGAAGA
Found at i:106983 original size:34 final size:33
Alignment explanation
Indices: 106908--107056 Score: 132
Period size: 30 Copynumber: 4.7 Consensus size: 33
106898 GAGAAGAGAT
* * *
106908 TGCCATTGAGT-GTGGACTTTG-AAGAAAAGA-
1 TGCCACTGAGTCGTGGACTTTGAAAAAAAAAAG
106938 TGCCACTGAGTCGTGGACTTTGAAAATAAAAAAG
1 TGCCACTGAGTCGTGGACTTTGAAAA-AAAAAAG
* * * * *
106972 TGCCACAGAGTCATAGACTTTGAAGAAAAAGA-
1 TGCCACTGAGTCGTGGACTTTGAAAAAAAAAAG
* * *
107004 TGCCACTGAGTCGTGGACTTTG--AGAAGAGA-
1 TGCCACTGAGTCGTGGACTTTGAAAAAAAAAAG
*
107034 TGCCATTGAGTCGTGGACTTTGA
1 TGCCACTGAGTCGTGGACTTTGA
107057 GAAGAGAGAT
Statistics
Matches: 99, Mismatches: 15, Indels: 9
0.80 0.12 0.07
Matches are distributed among these distances:
30 36 0.36
31 10 0.10
32 21 0.21
33 10 0.10
34 22 0.22
ACGTcount: A:0.33, C:0.15, G:0.28, T:0.25
Consensus pattern (33 bp):
TGCCACTGAGTCGTGGACTTTGAAAAAAAAAAG
Found at i:107063 original size:30 final size:31
Alignment explanation
Indices: 106549--107056 Score: 221
Period size: 33 Copynumber: 15.9 Consensus size: 31
106539 CTTAAAGGGA
* * **
106549 AAAAGATGCCACGGAGTTGTGGACTTAAAAGG
1 AAAAGATGCCACTGAGTCGTGGACTTTGAA-G
* * * * *
106581 AAAAAGATGGCACAGAGTTGTGGGCTTTAAAAAG
1 -AAAAGATGCCACTGAGTCGTGGACTTT--GAAG
* * *
106615 AAAAAGGTGCCACGGAGTTGTGGAC-TT-AA-
1 -AAAAGATGCCACTGAGTCGTGGACTTTGAAG
* * **
106644 AAATG-TGCCACGGAGTTATGGACTTTGAAAGG
1 AAAAGATGCCACTGAGTCGTGGACTTTG-AA-G
* * * **
106676 AACAAGGTGCCACAGAGTTGTGGACTTAAAAGG
1 AA-AAGATGCCACTGAGTCGTGGACTTTGAA-G
* * * * *
106709 AAAAAGATGCCACGGATTTGTGGGCTTTAAAAAG
1 -AAAAGATGCCACTGAGTCGTGGACTTT--GAAG
* * **
106743 AAAA-ATGTGCCACGGAGTTGTGGACTTAAAAGG
1 AAAAGA--TGCCACTGAGTCGTGGACTTTGAA-G
* *
106776 AAAAAGATGCCACGGAGTTGTGGAC-TT--A-
1 -AAAAGATGCCACTGAGTCGTGGACTTTGAAG
* * * *
106804 AAAGGGTGCCACGGAGTTGTGGACTTTGAAAGG
1 AAAAGATGCCACTGAGTCGTGGACTTTG-AA-G
* * * **
106837 AACAAGGTGCCACGGAGTTGTGGACTTAAAAGG
1 AA-AAGATGCCACTGAGTCGTGGACTTTGAA-G
* * *
106870 AAGAAGATGTCACCGAGTTGTGGACTTTG-AG
1 AA-AAGATGCCACTGAGTCGTGGACTTTGAAG
* *
106901 AAGAGATTGCCATTGAGT-GTGGACTTTGAAG
1 AAAAGA-TGCCACTGAGTCGTGGACTTTGAAG
*
106932 AAAAGATGCCACTGAGTCGTGGACTTTGAAAAT
1 AAAAGATGCCACTGAGTCGTGGACTTTG--AAG
* * * *
106965 AAAAAAGTGCCACAGAGTCATAGACTTTGAAG
1 AAAAGA-TGCCACTGAGTCGTGGACTTTGAAG
106997 AAAAAGATGCCACTGAGTCGTGGACTTTG-AG
1 -AAAAGATGCCACTGAGTCGTGGACTTTGAAG
* *
107028 AAGAGATGCCATTGAGTCGTGGACTTTGA
1 AAAAGATGCCACTGAGTCGTGGACTTTGA
107057 GAAGAGAGAT
Statistics
Matches: 390, Mismatches: 53, Indels: 66
0.77 0.10 0.13
Matches are distributed among these distances:
27 39 0.10
28 8 0.02
30 54 0.14
31 31 0.08
32 29 0.07
33 115 0.29
34 107 0.27
35 7 0.02
ACGTcount: A:0.34, C:0.13, G:0.30, T:0.22
Consensus pattern (31 bp):
AAAAGATGCCACTGAGTCGTGGACTTTGAAG
Found at i:115230 original size:20 final size:22
Alignment explanation
Indices: 115205--115260 Score: 80
Period size: 20 Copynumber: 2.6 Consensus size: 22
115195 AAATTCCCAG
115205 ATGTATCGATACAAAG-ATC-A
1 ATGTATCGATACAAAGTATCGA
*
115225 ATGTATCGATACAATGTATCGTA
1 ATGTATCGATACAAAGTATCG-A
115248 ATGTATCGATACA
1 ATGTATCGATACA
115261 TTTCCTTGGC
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
20 15 0.47
21 3 0.09
23 14 0.44
ACGTcount: A:0.39, C:0.14, G:0.16, T:0.30
Consensus pattern (22 bp):
ATGTATCGATACAAAGTATCGA
Found at i:115241 original size:13 final size:13
Alignment explanation
Indices: 115223--115260 Score: 55
Period size: 13 Copynumber: 3.2 Consensus size: 13
115213 ATACAAAGAT
115223 CAATGTATCGATA
1 CAATGTATCGATA
115236 CAATGTATCG-T-
1 CAATGTATCGATA
115247 -AATGTATCGATA
1 CAATGTATCGATA
115259 CA
1 CA
115261 TTTCCTTGGC
Statistics
Matches: 22, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
10 9 0.41
11 1 0.05
12 1 0.05
13 11 0.50
ACGTcount: A:0.37, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
CAATGTATCGATA
Found at i:116865 original size:10 final size:10
Alignment explanation
Indices: 116850--116944 Score: 76
Period size: 10 Copynumber: 9.9 Consensus size: 10
116840 CATCCTTTAT
116850 ACAAAAAAAA
1 ACAAAAAAAA
116860 AC-AAAAAAA
1 ACAAAAAAAA
116869 AC-AAAAAAA
1 ACAAAAAAAA
116878 AC--AAAAAA
1 ACAAAAAAAA
*
116886 AC-AGAAAAA
1 ACAAAAAAAA
* *
116895 ACCAAAAACA
1 ACAAAAAAAA
116905 ACAAAAAAAA
1 ACAAAAAAAA
*
116915 TA-AAAAAACCA
1 -ACAAAAAA-AA
* *
116926 AGAAAAAATA
1 ACAAAAAAAA
116936 ACAAAAAAA
1 ACAAAAAAA
116945 CAGAAAGGGG
Statistics
Matches: 71, Mismatches: 9, Indels: 10
0.79 0.10 0.11
Matches are distributed among these distances:
8 8 0.11
9 25 0.35
10 30 0.42
11 8 0.11
ACGTcount: A:0.83, C:0.13, G:0.02, T:0.02
Consensus pattern (10 bp):
ACAAAAAAAA
Found at i:116867 original size:9 final size:9
Alignment explanation
Indices: 116853--116943 Score: 103
Period size: 9 Copynumber: 9.9 Consensus size: 9
116843 CCTTTATACA
116853 AAAAAAAAC
1 AAAAAAAAC
116862 AAAAAAAAC
1 AAAAAAAAC
116871 AAAAAAAAC
1 AAAAAAAAC
116880 -AAAAAAAC
1 AAAAAAAAC
*
116888 AGAAAAAACC
1 A-AAAAAAAC
*
116898 AAAAACAAC
1 AAAAAAAAC
*
116907 AAAAAAAAT
1 AAAAAAAAC
*
116916 AAAAAAACC
1 AAAAAAAAC
*
116925 AAGAAAAAAT
1 AA-AAAAAAC
116935 AACAAAAAA
1 AA-AAAAAA
116944 ACAGAAAGGG
Statistics
Matches: 69, Mismatches: 10, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
8 8 0.12
9 40 0.58
10 21 0.30
ACGTcount: A:0.84, C:0.12, G:0.02, T:0.02
Consensus pattern (9 bp):
AAAAAAAAC
Found at i:116872 original size:19 final size:19
Alignment explanation
Indices: 116850--116944 Score: 97
Period size: 19 Copynumber: 5.0 Consensus size: 19
116840 CATCCTTTAT
116850 ACAAAAAAAAACAAAAAAA
1 ACAAAAAAAAACAAAAAAA
116869 AC-AAAAAAAAC-AAAAAA
1 ACAAAAAAAAACAAAAAAA
* * *
116886 ACAGAAAAAACCAAAAACA
1 ACAAAAAAAAACAAAAAAA
116905 ACAAAAAAAATA-AAAAAACCA
1 ACAAAAAAAA-ACAAAAAA--A
* *
116926 AGAAAAAATAACAAAAAAA
1 ACAAAAAAAAACAAAAAAA
116945 CAGAAAGGGG
Statistics
Matches: 62, Mismatches: 8, Indels: 12
0.76 0.10 0.15
Matches are distributed among these distances:
17 8 0.13
18 16 0.26
19 22 0.35
20 1 0.02
21 15 0.24
ACGTcount: A:0.83, C:0.13, G:0.02, T:0.02
Consensus pattern (19 bp):
ACAAAAAAAAACAAAAAAA
Found at i:116942 original size:1 final size:1
Alignment explanation
Indices: 116852--116922 Score: 52
Period size: 1 Copynumber: 71.0 Consensus size: 1
116842 TCCTTTATAC
* * * * * ** * * *
116852 AAAAAAAAACAAAAAAAACAAAAAAAACAAAAAAACAGAAAAAACCAAAAACAACAAAAAAAATA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
116917 AAAAAA
1 AAAAAA
116923 CCAAGAAAAA
Statistics
Matches: 52, Mismatches: 18, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
1 52 1.00
ACGTcount: A:0.86, C:0.11, G:0.01, T:0.01
Consensus pattern (1 bp):
A
Found at i:118204 original size:28 final size:28
Alignment explanation
Indices: 118163--119002 Score: 955
Period size: 28 Copynumber: 29.5 Consensus size: 28
118153 ACGTTCATCT
*
118163 CTTT-AAAGCCCACAAGTTAGTGGCACC
1 CTTTCAAAGCCCACAAGTCAGTGGCACC
* *
118190 CTTTCAAAGCTCACAAGTCAGTGGCATC
1 CTTTCAAAGCCCACAAGTCAGTGGCACC
118218 CTTTCAAAGCCCACAAGTCAGTGGCACC
1 CTTTCAAAGCCCACAAGTCAGTGGCACC
* *
118246 CTTTCAAAGCCCACAAGTTAGTGGCATC
1 CTTTCAAAGCCCACAAGTCAGTGGCACC
* * * **
118274 CTTTCAAAGCTCACGATTTGGTGGCAACTC
1 CTTTCAAAGCCCACAAGTCAGTGGC-AC-C
* *
118304 TTTTCAAAGCTCACAAGTCAGTGGCACC
1 CTTTCAAAGCCCACAAGTCAGTGGCACC
* *
118332 CTTTTAAAGCCCACAAGTCAGTGGCATC
1 CTTTCAAAGCCCACAAGTCAGTGGCACC
* **
118360 CTTTCAAAACCCACAAGTCAGTGGCATT
1 CTTTCAAAGCCCACAAGTCAGTGGCACC
* *
118388 CTTTCAAAGCCCTCGAA-TCGGTGGCAACTC
1 CTTTCAAAGCCCAC-AAGTCAGTGGC-AC-C
* * *
118418 TTTTCAAAGCCCACTAGTTAGTGGCACC
1 CTTTCAAAGCCCACAAGTCAGTGGCACC
118446 CTTTCAAAGCCCACAAGTCAGTGGCACTC
1 CTTTCAAAGCCCACAAGTCAGTGGCAC-C
*
118475 TTTTCAAAGCCCACAAGTCAGTGGCACC
1 CTTTCAAAGCCCACAAGTCAGTGGCACC
* * *
118503 TTTTAAAAGCCCACAAGTCAGTGGCATC
1 CTTTCAAAGCCCACAAGTCAGTGGCACC
*
118531 CTTTCAAAGCCCACGAGTCAGTGGCAACTC
1 CTTTCAAAGCCCACAAGTCAGTGGC-AC-C
* * *
118561 TTTTCAAAGCCCACAAGTTAGTGGCATC
1 CTTTCAAAGCCCACAAGTCAGTGGCACC
118589 CTTTCAAAGCCCACAAGTCAGTGGCACTC
1 CTTTCAAAGCCCACAAGTCAGTGGCAC-C
* *
118618 TTTTCAAAGCCCACAAGTCGGTGGCACC
1 CTTTCAAAGCCCACAAGTCAGTGGCACC
* *
118646 TTTTCAAAGCCCACAAGTCAGTGGCATC
1 CTTTCAAAGCCCACAAGTCAGTGGCACC
**
118674 CTTTCAAAGCCCACAAGTCAGTGGCATT
1 CTTTCAAAGCCCACAAGTCAGTGGCACC
* ** ** * **
118702 CTTTCCAAGCCCATGAGTTGGTGACAATTG
1 CTTTCAAAGCCCACAAGTCAGTGGC-A-CC
* *
118732 TTTTCAAACCCCACAAGTCAGTGGCACC
1 CTTTCAAAGCCCACAAGTCAGTGGCACC
* * *
118760 CTTTTAAAGCCCATAAGTCAGTGGCATTC
1 CTTTCAAAGCCCACAAGTCAGTGGCA-CC
* * *
118789 TTTTCAAACCCCATAAGTCAGTGGCACC
1 CTTTCAAAGCCCACAAGTCAGTGGCACC
* * *
118817 CTTTCAAAGCCCACGAGTGAGTGGCATC
1 CTTTCAAAGCCCACAAGTCAGTGGCACC
* *
118845 CTTTCAAAGCCCACGAGTCGGTGGCAACTC
1 CTTTCAAAGCCCACAAGTCAGTGGC-AC-C
*
118875 TTTTCAAAGCCCACAAGTCAGTGGCACC
1 CTTTCAAAGCCCACAAGTCAGTGGCACC
*
118903 CTTTCAAAGCCTACAAGTCAGTGGCACTC
1 CTTTCAAAGCCCACAAGTCAGTGGCAC-C
* * *
118932 ATTTTAAAGCCCACAAGTCAGTGGCATC
1 CTTTCAAAGCCCACAAGTCAGTGGCACC
*
118960 CTTTCAAAGCCCATAAGTCAGTGGCACC
1 CTTTCAAAGCCCACAAGTCAGTGGCACC
*
118988 TTTTCAAAGCCCACA
1 CTTTCAAAGCCCACA
119003 TGAGTTGGTG
Statistics
Matches: 689, Mismatches: 107, Indels: 33
0.83 0.13 0.04
Matches are distributed among these distances:
27 4 0.01
28 465 0.67
29 117 0.17
30 103 0.15
ACGTcount: A:0.28, C:0.30, G:0.18, T:0.24
Consensus pattern (28 bp):
CTTTCAAAGCCCACAAGTCAGTGGCACC
Found at i:118527 original size:171 final size:169
Alignment explanation
Indices: 118158--119002 Score: 1038
Period size: 171 Copynumber: 4.9 Consensus size: 169
118148 CTAGAACGTT
* * * *
118158 CATCTCTTT-AAAGCCCACAAGTTAGTGGCACCCTTTCAAAGCTCACAAGTCAGTGGCATCCTTT
1 CATC-CTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATTCTTT
* * *
118222 CAAAGCCCACAAGTCAGTGGCAC-CCTTTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCTC
65 CAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCC
* * ** *
118286 ACGATTTGGTGGCAACTCTTTTCAAAGCTCACAAGTCAGTGG
130 ACAAGTCAGTGGC-AC-CTTTTCAAAGCCCACAAGTCAGTGG
* * *
118328 CACCCTTTTAAAGCCCACAAGTCAGTGGCATCCTTTCAAAACCCACAAGTCAGTGGCATTCTTTC
1 CATCCTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATTCTTTC
* * * * *
118393 AAAGCCCTCGAA-TCGGTGGCAACTCTTTTCAAAGCCCACTAGTTAGTGGCACCCTTTCAAAGCC
66 AAAGCCCAC-AAGTCAGTGGC-ACTCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCC
118457 CACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGG
129 CACAAGTCAGTGGCAC-CTTTTCAAAGCCCACAAGTCAGTGG
* * *
118499 CA-CCTTTTAAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACGAGTCAGTGGCAACTCTT
1 CATCC-TTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGC-ATTC-T
* * *
118563 TTCAAAGCCCACAAGTTAGTGGCA-TCCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAG
63 TTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCA-TCCTTTCAAAG
*
118627 CCCACAAGTCGGTGGCACCTTTTCAAAGCCCACAAGTCAGTGG
127 CCCACAAGTCAGTGGCACCTTTTCAAAGCCCACAAGTCAGTGG
* * ** ** * *
118670 CATCCTTTCAAAGCCCACAAGTCAGTGGCATTCTTTCCAAGCCCATGAGTTGGTGACAATTGTTT
1 CATCCTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGC-ATT-CTT
* * * * *
118735 TCAAACCCCACAAGTCAGTGGCACCCTTTT-AAAGCCCATAAGTCAGTGGCATTCTTTTCAAACC
64 TCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCA-TCCTTTCAAAGC
* * * *
118799 CCATAAGTCAGTGGCACCCTTTCAAAGCCCACGAGTGAGTGG
128 CCACAAGTCAGTGGCACCTTTTCAAAGCCCACAAGTCAGTGG
* * * **
118841 CATCCTTTCAAAGCCCACGAGTCGGTGGCAACTCTTTTCAAAGCCCACAAGTCAGTGGCACCCTT
1 CATCCTTTCAAAGCCCACAAGTCAGTGGC-A-TCCTTTCAAAGCCCACAAGTCAGTGGCATTCTT
*
118906 TCAAAGCCTACAAGTCAGTGGCACTCATTTT-AAAGCCCACAAGTCAGTGGCATCCTTTCAAAGC
64 TCAAAGCCCACAAGTCAGTGGCACTC-TTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGC
*
118970 CCATAAGTCAGTGGCACCTTTTCAAAGCCCACA
128 CCACAAGTCAGTGGCACCTTTTCAAAGCCCACA
119003 TGAGTTGGTG
Statistics
Matches: 588, Mismatches: 72, Indels: 29
0.85 0.10 0.04
Matches are distributed among these distances:
169 4 0.01
170 71 0.12
171 366 0.62
172 110 0.19
173 37 0.06
ACGTcount: A:0.28, C:0.30, G:0.18, T:0.24
Consensus pattern (169 bp):
CATCCTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATTCTTTC
AAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCA
CAAGTCAGTGGCACCTTTTCAAAGCCCACAAGTCAGTGG
Found at i:118541 original size:143 final size:144
Alignment explanation
Indices: 118167--119053 Score: 1133
Period size: 143 Copynumber: 6.2 Consensus size: 144
118157 TCATCTCTTT
* * *
118167 AAAGCCCACAAGTTAGTGGCACCCTTTCAAAGCTCACAAGTCAGTGGCATCC-TTTCAAAGCCCA
1 AAAGCCCACAAGTCAGTGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTTCAAAGCCCA
* * * * * *
118231 CAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTTAGTGGCA-TCCTTTCAAAGCTCACGATTTGG
66 CAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACTAGTTGG
118295 TGGCAACTCTTTTC
131 TGGCAACTCTTTTC
* *
118309 AAAGCTCACAAGTCAGTGGCACCCTTTT-AAAGCCCACAAGTCAGTGGCATCC-TTTCAAAACCC
1 AAAGCCCACAAGTCAGTGGCA-CCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTTCAAAGCCC
* * *
118372 ACAAGTCAGTGGCATTCTTTCAAAGCCCTCGAA-TCGGTGGCAACTCTTTTCAAAGCCCACTAGT
65 ACAAGTCAGTGGCATCCTTTCAAAGCCCAC-AAGTCAGTGGC-ACTCTTTTCAAAGCCCACTAGT
* *
118436 TAGTGGC-AC-CCTTTC
128 TGGTGGCAACTCTTTTC
*
118451 AAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCA-CCTTTTAAAAGCCC
1 AAAGCCCACAAGTCAGTGGCAC-CTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTTCAAAGCCC
* *
118515 ACAAGTCAGTGGCATCCTTTCAAAGCCCACGAGTCAGTGGCAACTCTTTTCAAAGCCCACAAGTT
65 ACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGC-ACTCTTTTCAAAGCCCACTAGTT
* *
118580 AGTGGC-A-TCCTTTC
129 GGTGGCAACTCTTTTC
*
118594 AAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCGGTGGCA-CCTTTTCAAAGCCC
1 AAAGCCCACAAGTCAGTGGCAC-CTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTTCAAAGCCC
* *
118658 ACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATTC-TTTCCAAGCCCA-TGAGTT
65 ACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACT-AGTT
* * *
118721 GGTGACAATTGTTTTC
129 GGTGGCAACTCTTTTC
* * * *
118737 AAACCCCACAAGTCAGTGGCACCCTTTT-AAAGCCCATAAGTCAGTGGCATTCTTTTCAAACCCC
1 AAAGCCCACAAGTCAGTGGCA-CCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTTCAAAGCCC
* * * * * * *
118801 ATAAGTCAGTGGCACCCTTTCAAAGCCCACGAGTGAGTGGCA-TCCTTTCAAAGCCCACGAGTCG
65 ACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACTAGTTG
118865 GTGGCAACTCTTTTC
130 GTGGCAACTCTTTTC
* * *
118880 AAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCTACAAGTCAGTGGCACTCATTTT-AAAGCCC
1 AAAGCCCACAAGTCAGTGGCACCTTTTCAAAGCCCACAAGTCAGTGGCA-TCCTTTTCAAAGCCC
*
118944 ACAAGTCAGTGGCATCCTTTCAAAGCCCATAAGTCAGTGGCAC-CTTTTCAAAGCCCACATGAGT
65 ACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCAC-T-AGT
*
119008 TGGTGACAACTCTTTTC
128 TGGTGGCAACTCTTTTC
* *
119025 AAAGTCGCACAAGTTAGTGGCACCGTTTT
1 AAAG-CCCACAAGTCAGTGGCACC-TTTT
119054 TTAAAAAAAA
Statistics
Matches: 654, Mismatches: 68, Indels: 41
0.86 0.09 0.05
Matches are distributed among these distances:
141 20 0.03
142 148 0.23
143 416 0.64
144 28 0.04
145 22 0.03
146 17 0.03
147 3 0.00
ACGTcount: A:0.28, C:0.29, G:0.19, T:0.24
Consensus pattern (144 bp):
AAAGCCCACAAGTCAGTGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTTCAAAGCCCA
CAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACTAGTTGG
TGGCAACTCTTTTC
Found at i:119379 original size:28 final size:28
Alignment explanation
Indices: 119338--119392 Score: 92
Period size: 28 Copynumber: 2.0 Consensus size: 28
119328 ATATCCTTCC
119338 ACAACACCTATCTAACTCTACCCCGAAT
1 ACAACACCTATCTAACTCTACCCCGAAT
* *
119366 ACAACACCTGTCTAACTCTACCTCGAA
1 ACAACACCTATCTAACTCTACCCCGAA
119393 CAAAACGGTG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.35, C:0.38, G:0.05, T:0.22
Consensus pattern (28 bp):
ACAACACCTATCTAACTCTACCCCGAAT
Found at i:119986 original size:20 final size:20
Alignment explanation
Indices: 119962--120036 Score: 96
Period size: 20 Copynumber: 3.8 Consensus size: 20
119952 AAGTACCCAG
119962 ATGTATCGATACATTTTTCA
1 ATGTATCGATACATTTTTCA
* * * *
119982 TTGTATCGATACATGTATGA
1 ATGTATCGATACATTTTTCA
* *
120002 ATGTATCGATAAATTCTTCA
1 ATGTATCGATACATTTTTCA
120022 ATGTATCGATACATT
1 ATGTATCGATACATT
120037 CTGTCTTTTT
Statistics
Matches: 44, Mismatches: 11, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.32, C:0.13, G:0.13, T:0.41
Consensus pattern (20 bp):
ATGTATCGATACATTTTTCA
Found at i:120920 original size:16 final size:16
Alignment explanation
Indices: 120899--120931 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
120889 ATGTTTTCCA
120899 TGTATGATTATCACAT
1 TGTATGATTATCACAT
120915 TGTATGATTATCACAT
1 TGTATGATTATCACAT
120931 T
1 T
120932 TTCCATGTCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.30, C:0.12, G:0.12, T:0.45
Consensus pattern (16 bp):
TGTATGATTATCACAT
Found at i:124450 original size:41 final size:41
Alignment explanation
Indices: 124379--124471 Score: 123
Period size: 41 Copynumber: 2.2 Consensus size: 41
124369 AAAACAGAAA
* * * *
124379 TTCTATTTTCTTAACGTTCCCATGCTTTATCAAATAAGAGT
1 TTCTATTTTATTAACATTCCCATGCCTTATCAAATAAAAGT
* *
124420 TTCTGTTTTATTAACATTCTCATGCCTTATCAAATAAAAGT
1 TTCTATTTTATTAACATTCCCATGCCTTATCAAATAAAAGT
124461 TTCTAATTTTA
1 TTCT-ATTTTA
124472 ATTTGAATGC
Statistics
Matches: 44, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
41 39 0.89
42 5 0.11
ACGTcount: A:0.29, C:0.17, G:0.08, T:0.46
Consensus pattern (41 bp):
TTCTATTTTATTAACATTCCCATGCCTTATCAAATAAAAGT
Found at i:126755 original size:12 final size:12
Alignment explanation
Indices: 126738--126779 Score: 61
Period size: 12 Copynumber: 3.6 Consensus size: 12
126728 TTTTTTAGAT
126738 TCAGCCACATTC
1 TCAGCCACATTC
126750 TCAGCCACACTTC
1 TCAGCCACA-TTC
126763 -CAGCCACA-TC
1 TCAGCCACATTC
126773 TCAGCCA
1 TCAGCCA
126780 AAACATCAAC
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
10 2 0.07
11 6 0.21
12 17 0.61
13 3 0.11
ACGTcount: A:0.26, C:0.45, G:0.10, T:0.19
Consensus pattern (12 bp):
TCAGCCACATTC
Found at i:129334 original size:22 final size:22
Alignment explanation
Indices: 129307--129350 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
129297 TAAAATTTCT
129307 TCTAAAATTCTCTTTTGATTCC
1 TCTAAAATTCTCTTTTGATTCC
129329 TCTAAAATTCTCTTTTGATTCC
1 TCTAAAATTCTCTTTTGATTCC
129351 AACTACATTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.23, C:0.23, G:0.05, T:0.50
Consensus pattern (22 bp):
TCTAAAATTCTCTTTTGATTCC
Found at i:130894 original size:25 final size:25
Alignment explanation
Indices: 130865--130915 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
130855 ATTTAGGTCA
130865 ATTGAGTTTGACACATGAGTAACAC
1 ATTGAGTTTGACACATGAGTAACAC
130890 ATTGAGTTTGACACATGAGTAACAC
1 ATTGAGTTTGACACATGAGTAACAC
130915 A
1 A
130916 AGTTCGAATA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.37, C:0.16, G:0.20, T:0.27
Consensus pattern (25 bp):
ATTGAGTTTGACACATGAGTAACAC
Found at i:130905 original size:14 final size:13
Alignment explanation
Indices: 130867--130909 Score: 54
Period size: 13 Copynumber: 3.4 Consensus size: 13
130857 TTAGGTCAAT
130867 TGAGTTTGACACA
1 TGAGTTTGACACA
*
130880 TGAG--TAACACA
1 TGAGTTTGACACA
130891 TTGAGTTTGACACA
1 -TGAGTTTGACACA
130905 TGAGT
1 TGAGT
130910 AACACAAGTT
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
11 6 0.24
12 4 0.16
13 9 0.36
14 6 0.24
ACGTcount: A:0.33, C:0.14, G:0.23, T:0.30
Consensus pattern (13 bp):
TGAGTTTGACACA
Found at i:131612 original size:17 final size:19
Alignment explanation
Indices: 131586--131621 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
131576 AAAGAGAATT
131586 TTTTTAAATATTTA-CAAA
1 TTTTTAAATATTTATCAAA
131604 TTTTT-AATATTTATCAAA
1 TTTTTAAATATTTATCAAA
131622 CAAATCTTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.42, C:0.06, G:0.00, T:0.53
Consensus pattern (19 bp):
TTTTTAAATATTTATCAAA
Found at i:136273 original size:58 final size:58
Alignment explanation
Indices: 136162--136277 Score: 144
Period size: 58 Copynumber: 2.0 Consensus size: 58
136152 AGCTACCATC
* * *
136162 GCAAAGCTAAAGTAGAGTCATTGGAAAATTATTCTTCATAATACAATCATTATCATTT
1 GCAAAGCTAAAGTAGAGTCATTGAAAAATTATTCTCCATAACACAATCATTATCATTT
* * * **
136220 GCAAAGCTGAAA-TAGAGTCGTTGAAAAATTGTTCTCCATAACACGATTGTTATCATTT
1 GCAAAGCT-AAAGTAGAGTCATTGAAAAATTATTCTCCATAACACAATCATTATCATTT
136278 AATTAATCCT
Statistics
Matches: 49, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
58 46 0.94
59 3 0.06
ACGTcount: A:0.37, C:0.15, G:0.15, T:0.34
Consensus pattern (58 bp):
GCAAAGCTAAAGTAGAGTCATTGAAAAATTATTCTCCATAACACAATCATTATCATTT
Found at i:148230 original size:49 final size:49
Alignment explanation
Indices: 148072--149383 Score: 933
Period size: 49 Copynumber: 27.9 Consensus size: 49
148062 CGAAGAATGA
* * * * *
148072 CAATATGCTGATTCATGGCCAGCGACATTAGACTTGAAGAAGAA--TGC
1 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGC
* * ** * ** * * * *
148119 CAATGTGTTGAGACAAGGCCAACGCCATTGGGCTTAGGAATGTTAAAGATGC
1 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTA--AA-GATGAAGGTGC
* * * *
148171 CAATATGCTGATTCAAGGCCAACGATATCGAACTTAAAGATGAAGGTGT
1 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGC
* * *
148220 CAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATAAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGC
* * * * *
148269 TAATATGCTGATTCAAGGCCAGTGATATCGGACCTAAAGATGAAGATGC
1 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGC
* * * *
148318 CAATGTGCTGATTTAAGACC-GACGACATTGGACTTAAAGATGGTTAAGGTGC
1 CAATATGCTGATTCAAGGCCAG-CGATATTGGACTTAAAGAT-G--AAGGTGC
* * * * *
148370 CAATGTGCTGATTCAAGGCCAACGACA-TCGATCTTAAAGATAAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCGATATTGGA-CTTAAAGATGAAGGTGC
148419 CAATATGCTGATTCAAGGCCAGCGATATTGGACTT----A--AAGGTGC
1 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGC
* * * *
148462 CATTATGTTGATTCAAGGCCAGCAATATTGGGC-T-----T----GTGC
1 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGC
* * * * * * *
148501 CAATGTACTGATTCAAGGCCAACGACA-TCGATCTTAAAGATAAAGGTGA
1 CAATATGCTGATTCAAGGCCAGCGATATTGGA-CTTAAAGATGAAGGTGC
* *
148550 TAATATGCTGATTCATGGCCAGCGATATTGGACTT-AAGATGGTAAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGAT-G--AAGGTGC
* *
148601 CAATATACTGATTCAAGGCTAGCGATATTGGACTT----A--AAGGTGC
1 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGC
* *
148644 CAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATGGTTAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGAT-G--AAGGTGC
* * * * *
148696 CAA-AGTGCTGATTCAAGGCCAACGACATCGGTCTTAAAGATAAAGGTGC
1 CAATA-TGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGC
* * * *
148745 TAATATACTGATTCAAGGACAGTGATATTGGACTT----A--AAGGTGC
1 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGC
* * * *
148788 CGATATGCTGATTCAAGGCTAGTGATATTGGGC-T-----T----GTGC
1 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGC
* *
148827 CAATATGCTGATTCAAGGCCAGCGACATT-GATCTTAAAGA-CAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCGATATTGGA-CTTAAAGATGAAGGTGC
* * *
148875 CAATATGCTAATTCAAGGCCAGCGATATTGGAC-TCAAGATGGTAAATGTGC
1 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGAT-G--AAGGTGC
*
148926 CAATATGCTGATTCAAGGCTAGCGATATTGGACTT----A--AAGGTGC
1 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGC
* * * *
148969 CAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATAAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGC
*
149018 CAATATGCTGATAT-AAGGCCAGCAATATTGGACTT----A--AAGGTGC
1 CAATATGCTGAT-TCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGC
* * * *
149061 CAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAAATGGTTAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGAT-G--AAGGTGC
* * * * * *
149113 CAATGTGTTGATTCAAGGCCAACGACATCGGTCTTAAAGATGAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGC
*
149162 CAATATGCTGATTCAAGGCCAGCGATATTGG-GTT-----T----GTGC
1 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGC
* * * *
149201 CAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATAAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGC
* *
149250 CAATATGCTGACTCAAGGCCAGCAATATTGGACTT-AA-AT--A--TGC
1 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGC
* * * * * * *
149293 CAATGTGCTGATCCAAGGCTAGCAACATTGGACTTAAAGATAAAGGTAC
1 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGC
* *
149342 CAATATGCTGATTCAAGGCAAGCGATATTGGACTTTAAGATG
1 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATG
149384 CCACAGAGTT
Statistics
Matches: 1012, Mismatches: 163, Indels: 178
0.75 0.12 0.13
Matches are distributed among these distances:
38 3 0.00
39 88 0.09
40 4 0.00
42 3 0.00
43 215 0.21
44 2 0.00
45 8 0.01
47 37 0.04
48 44 0.04
49 358 0.35
50 14 0.01
51 79 0.08
52 157 0.16
ACGTcount: A:0.32, C:0.17, G:0.25, T:0.26
Consensus pattern (49 bp):
CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGC
Found at i:148474 original size:43 final size:43
Alignment explanation
Indices: 148410--149386 Score: 564
Period size: 43 Copynumber: 21.3 Consensus size: 43
148400 ATCTTAAAGA
148410 TAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACT
1 TAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACT
* * * *
148453 TAAAGGTGCCATTATGTTGATTCAAGGCCAGCAATATTGGGCT
1 TAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACT
* * * * *
148496 T----GTGCCAATGTACTGATTCAAGGCCAACGACA-TCGATCTT
1 TAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGA-C-T
** *
148536 AAAGATAAAGGTGATAATATGCTGATTCATGGCCAGCGATATTGGACTTAAGAT
1 -----TAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC------T
* *
148590 GGTAAAGGTGCCAATATACTGATTCAAGGCTAGCGATATTGGACT
1 --TAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACT
* *
148635 TAAAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGTCT
1 TAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACT
* * * *
148678 TAAAGATGGTTAAGGTGCCAA-AGTGCTGATTCAAGGCCAACGACATCGGTCTT
1 T----A-----AAGGTGCCAATA-TGCTGATTCAAGGCCAGCGATATTGGAC-T
* * * *
148731 AAAGATAAAGGTGCTAATATACTGATTCAAGGACAGTGATATTGGACT
1 -----TAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACT
* * * *
148779 TAAAGGTGCCGATATGCTGATTCAAGGCTAGTGATATTGGGCT
1 TAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACT
*
148822 T----GTGCCAATATGCTGATTCAAGGCCAGCGACATT-GATCT
1 TAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGA-CT
*
148861 TAAAGACAAGGTGCCAATATGCTAATTCAAGGCCAGCGATATTGGACTCAAGAT
1 T----A-AAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGA--C----T
* *
148915 GGTAAATGTGCCAATATGCTGATTCAAGGCTAGCGATATTGGACT
1 --TAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACT
* * *
148960 TAAAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTT
1 TAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC-T
*
149004 AAAGATAAAGGTGCCAATATGCTGATAT-AAGGCCAGCAATATTGGACT
1 -----TAAAGGTGCCAATATGCTGAT-TCAAGGCCAGCGATATTGGACT
* * *
149052 TAAAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCT
1 TAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACT
* * * * * *
149095 TAAAAATGGTTAAGGTGCCAATGTGTTGATTCAAGGCCAACGACATCGGTCT
1 T----A-----AAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACT
*
149147 TAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGG-GT
1 T----A--AAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACT
* * * *
149195 T---TGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTT
1 TAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC-T
* *
149236 AAAGATAAAGGTGCCAATATGCTGACTCAAGGCCAGCAATATTGGACT
1 -----TAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACT
** * * * * *
149284 TAAATATGCCAATGTGCTGATCCAAGGCTAGCAACATTGGACTT
1 TAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC-T
* *
149328 AAAGATAAAGGTACCAATATGCTGATTCAAGGCAAGCGATATTGGACT
1 -----TAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACT
* *
149376 TTAAGATGCCA
1 TAAAGGTGCCA
149387 CAGAGTTGTG
Statistics
Matches: 739, Mismatches: 110, Indels: 170
0.73 0.11 0.17
Matches are distributed among these distances:
38 3 0.00
39 90 0.12
40 1 0.00
41 1 0.00
42 1 0.00
43 236 0.32
44 2 0.00
45 3 0.00
46 1 0.00
47 2 0.00
48 37 0.05
49 194 0.26
50 7 0.01
51 75 0.10
52 80 0.11
53 1 0.00
54 3 0.00
56 1 0.00
58 1 0.00
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.26
Consensus pattern (43 bp):
TAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACT
Found at i:148627 original size:182 final size:187
Alignment explanation
Indices: 148410--148853 Score: 519
Period size: 195 Copynumber: 2.4 Consensus size: 187
148400 ATCTTAAAGA
* * *
148410 TAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCATTATGTTGATT
1 TAAAGGTGCCAATATACTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATATGCTGATT
*
148475 CAAGGCCAGC-A-A-TATT-G-GGCTT-GTGCCAATGTACTGATTCAAGGCCAACGACATCGATC
66 CAAGGCCAGCGACAGTATTAGAGG-TTAGTGCCAAAGTACTGATTCAAGGCCAACGACATCGATC
* * *
148534 TTAAAGATAAAGGTGATAATATGCTGATTCATGGCCAGCGATATTGGACTTAAGATGG
130 TTAAAGATAAAGGTGATAATATACTGATTCAAGGACAGCGATATTGGACTTAAGATGG
*
148592 TAAAGGTGCCAATATACTGATTCAAGGCTAGCGATATTGGACTTAAAGGTGCCAATATGCTGATT
1 TAAAGGTGCCAATATACTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATATGCTGATT
* *
148657 CAAGGCCAGCGACATTGGTCTTAAAGATGGTTAAGGTGCCAAAGTGCTGATTCAAGGCCAACGAC
66 CAAGGCCAGCGACA---GTATT--AGA-GGTT-A-GTGCCAAAGTACTGATTCAAGGCCAACGAC
* * *
148722 ATCGGTCTTAAAGATAAAGGTGCTAATATACTGATTCAAGGACAGTGATATTGGAC------T--
123 ATCGATCTTAAAGATAAAGGTGATAATATACTGATTCAAGGACAGCGATATTGGACTTAAGATGG
* * * * *
148779 TAAAGGTGCCGATATGCTGATTCAAGGCTAGTGATATTGGGCTT----GTGCCAATATGCTGATT
1 TAAAGGTGCCAATATACTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATATGCTGATT
148840 CAAGGCCAGCGACA
66 CAAGGCCAGCGACA
148854 TTGATCTTAA
Statistics
Matches: 231, Mismatches: 17, Indels: 27
0.84 0.06 0.10
Matches are distributed among these distances:
182 71 0.31
183 32 0.14
184 1 0.00
187 40 0.17
188 3 0.01
189 1 0.00
191 1 0.00
192 2 0.01
193 2 0.01
195 78 0.34
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.27
Consensus pattern (187 bp):
TAAAGGTGCCAATATACTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATATGCTGATT
CAAGGCCAGCGACAGTATTAGAGGTTAGTGCCAAAGTACTGATTCAAGGCCAACGACATCGATCT
TAAAGATAAAGGTGATAATATACTGATTCAAGGACAGCGATATTGGACTTAAGATGG
Found at i:148661 original size:21 final size:20
Alignment explanation
Indices: 148594--148661 Score: 50
Period size: 21 Copynumber: 3.2 Consensus size: 20
148584 TAAGATGGTA
148594 AAGGTGCCAATATACTGATTC
1 AAGGTGCCAATAT-CTGATTC
* *
148615 AAGGCTAG-CGATAT-TGGACTTA
1 AAGG-T-GCCAATATCT-GA-TTC
148637 AAGGTGCCAATATGCTGATTC
1 AAGGTGCCAATAT-CTGATTC
148658 AAGG
1 AAGG
148662 CCAGCGACAT
Statistics
Matches: 36, Mismatches: 4, Indels: 14
0.67 0.07 0.26
Matches are distributed among these distances:
20 2 0.06
21 18 0.50
22 14 0.39
23 2 0.06
ACGTcount: A:0.32, C:0.16, G:0.25, T:0.26
Consensus pattern (20 bp):
AAGGTGCCAATATCTGATTC
Found at i:148715 original size:52 final size:52
Alignment explanation
Indices: 148637--148762 Score: 170
Period size: 52 Copynumber: 2.5 Consensus size: 52
148627 ATTGGACTTA
* *
148637 AAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATGGTT
1 AAGGTGCCAATATGCTGATTCAAGGCCAACGACATCGGTCTTAAAGATGGTT
*
148689 AAGGTGCCAA-AGTGCTGATTCAAGGCCAACGACATCGGTCTTAAAGA---TA
1 AAGGTGCCAATA-TGCTGATTCAAGGCCAACGACATCGGTCTTAAAGATGGTT
* *
148738 AAGGTGCTAATATACTGATTCAAGG
1 AAGGTGCCAATATGCTGATTCAAGG
148763 ACAGTGATAT
Statistics
Matches: 67, Mismatches: 5, Indels: 7
0.85 0.06 0.09
Matches are distributed among these distances:
49 22 0.33
50 1 0.01
51 1 0.01
52 43 0.64
ACGTcount: A:0.33, C:0.17, G:0.25, T:0.25
Consensus pattern (52 bp):
AAGGTGCCAATATGCTGATTCAAGGCCAACGACATCGGTCTTAAAGATGGTT
Found at i:148774 original size:326 final size:325
Alignment explanation
Indices: 148168--149009 Score: 1226
Period size: 326 Copynumber: 2.6 Consensus size: 325
148158 ATGTTAAAGA
* * *
148168 TGCCAATATGCTGATTCAAGGCCAACGATATCGAACTTAAAGATGAAGGTGTCAATATGCTGATT
1 TGCCAATATGCTGATTCAAGGCCAACGACATCGATCTTAAAGATAAAGGTGT-AATATGCTGATT
* * * * * *
148233 CAAGGCCAGCGACATTGGTCTTAA-A-GATAAAGGTGCTAATATGCTGATTCAAGGCCAGTGATA
65 CAAGGCCAGCGATATTGGACTTAAGATGGTAAAGGTGCCAATATGCTGATTCAAGGCTAGCGATA
* * * * *
148296 TCGGACCTAAAGATGAAGATGCCAATGTGCTGATTTAAGACC-GACGACATTGGACTTAAAGATG
130 TTGGA-CTTAA-A-G--G-TGCCAATGTGCTGATTCAAGGCCAG-CGACATTGGTCTTAAAGATG
*
148360 GTTAAGGTGCCAATGTGCTGATTCAAGGCCAACGACATCGATCTTAAAGATAAAGGTGCCAATAT
188 GTTAAGGTGCCAAAGTGCTGATTCAAGGCCAACGACATCGATCTTAAAGATAAAGGTGCCAATAT
* * *
148425 GCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCC-ATTATGTTGATTCAAGGCCAGCAATA
253 ACTGATTCAAGGACAGCGATATTGGACTTAAAGGTGCCGA-TATGCTGATTCAAGGCCAGCAATA
148489 TTGGGCTTG
317 TTGGGCTTG
* *
148498 TGCCAATGTACTGATTCAAGGCCAACGACATCGATCTTAAAGATAAAGGTGATAATATGCTGATT
1 TGCCAATATGCTGATTCAAGGCCAACGACATCGATCTTAAAGATAAAGGTG-TAATATGCTGATT
* *
148563 CATGGCCAGCGATATTGGACTTAAGATGGTAAAGGTGCCAATATACTGATTCAAGGCTAGCGATA
65 CAAGGCCAGCGATATTGGACTTAAGATGGTAAAGGTGCCAATATGCTGATTCAAGGCTAGCGATA
*
148628 TTGGACTTAAAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATGGTTAAGG
130 TTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATGGTTAAGG
* *
148693 TGCCAAAGTGCTGATTCAAGGCCAACGACATCGGTCTTAAAGATAAAGGTGCTAATATACTGATT
195 TGCCAAAGTGCTGATTCAAGGCCAACGACATCGATCTTAAAGATAAAGGTGCCAATATACTGATT
* * **
148758 CAAGGACAGTGATATTGGACTTAAAGGTGCCGATATGCTGATTCAAGGCTAGTGATATTGGGCTT
260 CAAGGACAGCGATATTGGACTTAAAGGTGCCGATATGCTGATTCAAGGCCAGCAATATTGGGCTT
148823 G
325 G
* * * * *
148824 TGCCAATATGCTGATTCAAGGCCAGCGACATTGATCTTAAAGA-CAAGGTGCCAATATGCTAATT
1 TGCCAATATGCTGATTCAAGGCCAACGACATCGATCTTAAAGATAAAGGTG-TAATATGCTGATT
* *
148888 CAAGGCCAGCGATATTGGACTCAAGATGGTAAATGTGCCAATATGCTGATTCAAGGCTAGCGATA
65 CAAGGCCAGCGATATTGGACTTAAGATGGTAAAGGTGCCAATATGCTGATTCAAGGCTAGCGATA
148953 TTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGAT
130 TTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGAT
149010 AAAGGTGCCA
Statistics
Matches: 465, Mismatches: 42, Indels: 15
0.89 0.08 0.03
Matches are distributed among these distances:
325 134 0.29
326 204 0.44
327 3 0.01
329 1 0.00
330 80 0.17
331 6 0.01
332 37 0.08
ACGTcount: A:0.32, C:0.17, G:0.25, T:0.26
Consensus pattern (325 bp):
TGCCAATATGCTGATTCAAGGCCAACGACATCGATCTTAAAGATAAAGGTGTAATATGCTGATTC
AAGGCCAGCGATATTGGACTTAAGATGGTAAAGGTGCCAATATGCTGATTCAAGGCTAGCGATAT
TGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATGGTTAAGGT
GCCAAAGTGCTGATTCAAGGCCAACGACATCGATCTTAAAGATAAAGGTGCCAATATACTGATTC
AAGGACAGCGATATTGGACTTAAAGGTGCCGATATGCTGATTCAAGGCCAGCAATATTGGGCTTG
Found at i:148803 original size:92 final size:92
Alignment explanation
Indices: 148689--149192 Score: 467
Period size: 92 Copynumber: 5.4 Consensus size: 92
148679 AAAGATGGTT
* * * *
148689 AAGGTGCCAA-AGTGCTGATTCAAGGCCAACGACATCGGTCTTAAAGATAAAGGTGCTAATATAC
1 AAGGTGCCAATA-TGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATAAAGGTGCCAATATGC
* *
148753 TGATTCAAGGACAGTGATATTGGACTTA
65 TGATTCAAGGCCAGCGATATTGGACTTA
* * * * *
148781 AAGGTGCCGATATGCTGATTCAAGGCTAGTGATATTGGGC-T-----T----GTGCCAATATGCT
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATAAAGGTGCCAATATGCT
*
148836 GATTCAAGGCCAGCGACATT-GATCTTAAAGA
66 GATTCAAGGCCAGCGATATTGGA-CTT----A
* * * * * *
148867 CAAGGTGCCAATATGCTAATTCAAGGCCAGCGATATTGGACTCAAGATGGTAAATGTGCCAATAT
1 -AAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAA-A-GATAAAGGTGCCAATAT
*
148932 GCTGATTCAAGGCTAGCGATATTGGACTTA
63 GCTGATTCAAGGCCAGCGATATTGGACTTA
*
148962 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATAAAGGTGCCAATATGCT
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATAAAGGTGCCAATATGCT
*
149027 GATAT-AAGGCCAGCAATATTGGACTTA
66 GAT-TCAAGGCCAGCGATATTGGACTTA
* * * *
149054 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAAATGGTTAAGGTGCCAATGT
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGTCTT--AAA-GATAAAGGTGCCAATAT
* * * * *
149119 GTTGATTCAAGGCCAACGACATCGGTCTTAAAGA
63 GCTGATTCAAGGCCAGCGATATTGGACTT----A
*
149153 TGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGG
1 --AAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGG
149193 GTTTGTGCCA
Statistics
Matches: 341, Mismatches: 40, Indels: 53
0.79 0.09 0.12
Matches are distributed among these distances:
81 2 0.01
82 31 0.09
86 2 0.01
87 35 0.10
91 1 0.00
92 114 0.33
93 3 0.01
94 43 0.13
95 37 0.11
99 35 0.10
100 2 0.01
101 36 0.11
ACGTcount: A:0.31, C:0.17, G:0.26, T:0.26
Consensus pattern (92 bp):
AAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATAAAGGTGCCAATATGCT
GATTCAAGGCCAGCGATATTGGACTTA
Found at i:149332 original size:92 final size:91
Alignment explanation
Indices: 149110--149386 Score: 380
Period size: 92 Copynumber: 3.1 Consensus size: 91
149100 ATGGTTAAGG
* * * *
149110 TGCCAATGTGTTGATTCAAGGCCAACGACATCGGTCTTAAAGATGAAGGTGCCAATATGCTGATT
1 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATAAAGGTGCCAATATGCTGATT
* *
149175 CAAGGCCAGCGATATTGG-GTT--TG
66 CAAGGCCAGCGATATTGGACTTAATA
*
149198 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATAAAGGTGCCAATATGCTGACT
1 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATAAAGGTGCCAATATGCTGATT
*
149263 CAAGGCCAGCAATATTGGACTTAAATA
66 CAAGGCCAGCGATATTGGACTT-AATA
* * * * *
149290 TGCCAATGTGCTGATCCAAGGCTAGCAACATTGGACTTAAAGATAAAGGTACCAATATGCTGATT
1 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATAAAGGTGCCAATATGCTGATT
* *
149355 CAAGGCAAGCGATATTGGACTTTAAGA
66 CAAGGCCAGCGATATTGGAC-TTAATA
149382 TGCCA
1 TGCCA
149387 CAGAGTTGTG
Statistics
Matches: 167, Mismatches: 17, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
88 77 0.46
89 2 0.01
92 86 0.51
93 2 0.01
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.26
Consensus pattern (91 bp):
TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATAAAGGTGCCAATATGCTGATT
CAAGGCCAGCGATATTGGACTTAATA
Found at i:149520 original size:33 final size:33
Alignment explanation
Indices: 149382--149822 Score: 385
Period size: 33 Copynumber: 13.6 Consensus size: 33
149372 GACTTTAAGA
* *
149382 TGCCACAGAGTTGTGGACTT-ACAGGAAAAAGGG
1 TGCCACGGAGTTGTGGACTTAAAAGGAAAAA-GG
* * * *
149415 ATGCCATGGAGGTGTGGGCTTAAAAAGGAAAAGGG
1 -TGCCACGGAGTTGTGGACTT-AAAAGGAAAAAGG
* * * *
149450 TGCCATGAAGTCGTGGACTTAAAAAG-AAAAGG
1 TGCCACGGAGTTGTGGACTTAAAAGGAAAAAGG
*
149482 TGCCACGGAGTTGTGGACTTAAAAGGAACAAGG
1 TGCCACGGAGTTGTGGACTTAAAAGGAAAAAGG
*
149515 TGCCACGGAGTTGTGGACTTAAAAGGAAAAAGA
1 TGCCACGGAGTTGTGGACTTAAAAGGAAAAAGG
* *
149548 TGCCATGGAATTGTGGACTTAAAAGGAAAAAGAG
1 TGCCACGGAGTTGTGGACTTAAAAGGAAAAAG-G
* * *
149582 TGTCAC-GAGTTGTGGGCTTTAAAAAGAAAAAGG
1 TGCCACGGAGTTGTGGAC-TTAAAAGGAAAAAGG
*
149615 TGCCACAGAGTTGTGGACTTAAAA-G-----GG
1 TGCCACGGAGTTGTGGACTTAAAAGGAAAAAGG
* * *
149642 TGCCACAGAGTTATGGACTTAAAAAAGAAAAAGG
1 TGCCACGGAGTTGTGGACTT-AAAAGGAAAAAGG
**
149676 TGCCACAAAGTTGTGGACTTAAAA-G-----GG
1 TGCCACGGAGTTGTGGACTTAAAAGGAAAAAGG
* * * * * *
149703 TTCCACAGAGTTATGGGCTTTAAAAAGAAAAAGC
1 TGCCACGGAGTTGTGGAC-TTAAAAGGAAAAAGG
149737 TGCCACGGAGTTGTGGACTTAAAAGGAAAAAGGG
1 TGCCACGGAGTTGTGGACTTAAAAGGAAAAA-GG
*
149771 TGCCACGGAGTTGTGGGCTTTAAAA--AAAAAGG
1 TGCCACGGAGTTGTGGAC-TTAAAAGGAAAAAGG
** *
149803 TGCCATAGAGTCGTGGACTT
1 TGCCACGGAGTTGTGGACTT
149823 TGGAAAGAGA
Statistics
Matches: 337, Mismatches: 48, Indels: 47
0.78 0.11 0.11
Matches are distributed among these distances:
27 37 0.11
28 10 0.03
29 2 0.01
31 2 0.01
32 45 0.13
33 113 0.34
34 112 0.33
35 8 0.02
36 8 0.02
ACGTcount: A:0.36, C:0.13, G:0.31, T:0.20
Consensus pattern (33 bp):
TGCCACGGAGTTGTGGACTTAAAAGGAAAAAGG
Found at i:149611 original size:34 final size:33
Alignment explanation
Indices: 149382--149822 Score: 376
Period size: 34 Copynumber: 13.6 Consensus size: 33
149372 GACTTTAAGA
* *
149382 TGCCACAGAGTTGTGGACTT-ACAGGAAAAAGGG
1 TGCCACAGAGTTGTGGACTTAAAAAGAAAAA-GG
** * * *
149415 ATGCCATGGAGGTGTGGGCTTAAAAAGGAAAAGGG
1 -TGCCACAGAGTTGTGGACTTAAAAA-GAAAAAGG
* *
149450 TGCCA-TGAAGTCGTGGACTTAAAAAG-AAAAGG
1 TGCCACAG-AGTTGTGGACTTAAAAAGAAAAAGG
* * *
149482 TGCCACGGAGTTGTGGACTTAAAAGGAACAAGG
1 TGCCACAGAGTTGTGGACTTAAAAAGAAAAAGG
* * *
149515 TGCCACGGAGTTGTGGACTTAAAAGGAAAAAGA
1 TGCCACAGAGTTGTGGACTTAAAAAGAAAAAGG
** * *
149548 TGCCATGGAATTGTGGACTTAAAAGGAAAAAGAG
1 TGCCACAGAGTTGTGGACTTAAAAAGAAAAAG-G
* *
149582 TGTCAC-GAGTTGTGGGCTTTAAAAAGAAAAAGG
1 TGCCACAGAGTTGTGGAC-TTAAAAAGAAAAAGG
149615 TGCCACAGAGTTGTGGACTT-AAAAG-----GG
1 TGCCACAGAGTTGTGGACTTAAAAAGAAAAAGG
*
149642 TGCCACAGAGTTATGGACTTAAAAAAGAAAAAGG
1 TGCCACAGAGTTGTGGACTT-AAAAAGAAAAAGG
*
149676 TGCCACAAAGTTGTGGACTT-AAAAG-----GG
1 TGCCACAGAGTTGTGGACTTAAAAAGAAAAAGG
* * * *
149703 TTCCACAGAGTTATGGGCTTTAAAAAGAAAAAGC
1 TGCCACAGAGTTGTGGAC-TTAAAAAGAAAAAGG
* *
149737 TGCCACGGAGTTGTGGACTTAAAAGGAAAAAGGG
1 TGCCACAGAGTTGTGGACTTAAAAAGAAAAA-GG
* * *
149771 TGCCACGGAGTTGTGGGCTTTAAAA-AAAAAGG
1 TGCCACAGAGTTGTGGACTTAAAAAGAAAAAGG
* *
149803 TGCCATAGAGTCGTGGACTT
1 TGCCACAGAGTTGTGGACTT
149823 TGGAAAGAGA
Statistics
Matches: 335, Mismatches: 49, Indels: 48
0.78 0.11 0.11
Matches are distributed among these distances:
27 37 0.11
28 2 0.01
29 10 0.03
32 54 0.16
33 103 0.31
34 120 0.36
35 4 0.01
36 5 0.01
ACGTcount: A:0.36, C:0.13, G:0.31, T:0.20
Consensus pattern (33 bp):
TGCCACAGAGTTGTGGACTTAAAAAGAAAAAGG
Found at i:149646 original size:27 final size:27
Alignment explanation
Indices: 149608--149714 Score: 115
Period size: 27 Copynumber: 3.7 Consensus size: 27
149598 CTTTAAAAAG
*
149608 AAAAAGGTGCCACAGAGTTGTGGACTT
1 AAAAGGGTGCCACAGAGTTGTGGACTT
*
149635 AAAAGGGTGCCACAGAGTTATGGACTT
1 AAAAGGGTGCCACAGAGTTGTGGACTT
*
149662 AAAAAAGAAAAAGGTGCCACAAAGTTGTGGACTT
1 --AAAAG-----GGTGCCACAGAGTTGTGGACTT
*
149696 AAAAGGGTTCCACAGAGTT
1 AAAAGGGTGCCACAGAGTT
149715 ATGGGCTTTA
Statistics
Matches: 67, Mismatches: 6, Indels: 14
0.77 0.07 0.16
Matches are distributed among these distances:
27 37 0.55
29 5 0.07
32 5 0.07
34 20 0.30
ACGTcount: A:0.38, C:0.14, G:0.27, T:0.21
Consensus pattern (27 bp):
AAAAGGGTGCCACAGAGTTGTGGACTT
Found at i:149653 original size:61 final size:61
Alignment explanation
Indices: 149575--149822 Score: 295
Period size: 61 Copynumber: 4.0 Consensus size: 61
149565 CTTAAAAGGA
* * *
149575 AAAAGAGTGTCAC-GAGTTGTGGGCTTTAAAAAGAAAAAGGTGCCACAGAGTTGTGGACTT
1 AAAAGGGTGCCACAGAGTTATGGGCTTTAAAAAGAAAAAGGTGCCACAGAGTTGTGGACTT
* * *
149635 AAAAGGGTGCCACAGAGTTATGGACTTAAAAAAGAAAAAGGTGCCACAAAGTTGTGGACTT
1 AAAAGGGTGCCACAGAGTTATGGGCTTTAAAAAGAAAAAGGTGCCACAGAGTTGTGGACTT
* * *
149696 AAAAGGGTTCCACAGAGTTATGGGCTTTAAAAAGAAAAAGCTGCCACGGAGTTGTGGACTT
1 AAAAGGGTGCCACAGAGTTATGGGCTTTAAAAAGAAAAAGGTGCCACAGAGTTGTGGACTT
* * * *
149757 AAAAGGAAAAAGGGTGCCACGGAGTTGTGGGCTTT-AAAA-AAAAAGGTGCCATAGAGTCGTGGA
1 -------AAAAGGGTGCCACAGAGTTATGGGCTTTAAAAAGAAAAAGGTGCCACAGAGTTGTGGA
149820 CTT
59 CTT
149823 TGGAAAGAGA
Statistics
Matches: 161, Mismatches: 19, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
60 11 0.07
61 98 0.61
66 23 0.14
67 4 0.02
68 25 0.16
ACGTcount: A:0.37, C:0.13, G:0.29, T:0.21
Consensus pattern (61 bp):
AAAAGGGTGCCACAGAGTTATGGGCTTTAAAAAGAAAAAGGTGCCACAGAGTTGTGGACTT
Done.