Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold295
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1524207
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 5 of 10
Found at i:580586 original size:19 final size:19
Alignment explanation
Indices: 580562--580598 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
580552 ACTGCCAGTT
**
580562 TCATGTATCGATACAATGA
1 TCATGTATAAATACAATGA
580581 TCATGTATAAATACAATG
1 TCATGTATAAATACAATG
580599 TATTGATACA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.41, C:0.14, G:0.14, T:0.32
Consensus pattern (19 bp):
TCATGTATAAATACAATGA
Found at i:583318 original size:20 final size:20
Alignment explanation
Indices: 583293--583347 Score: 67
Period size: 20 Copynumber: 2.8 Consensus size: 20
583283 TTTACCCAGA
*
583293 TGTATCGATACATT-TTGCAT
1 TGTATCGATACATTGCT-CAT
*
583313 TGTATCAATACATTGCTCAT
1 TGTATCGATACATTGCTCAT
*
583333 TGTATCGACACATTG
1 TGTATCGATACATTG
583348 TATCGATACA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
20 29 0.97
21 1 0.03
ACGTcount: A:0.27, C:0.18, G:0.15, T:0.40
Consensus pattern (20 bp):
TGTATCGATACATTGCTCAT
Found at i:583333 original size:82 final size:82
Alignment explanation
Indices: 583230--583426 Score: 331
Period size: 82 Copynumber: 2.4 Consensus size: 82
583220 TTTTCACAAT
* * * *
583230 TTGTATCGATGCATTGTTCATTATATCGATACATTGTATCGATCCATTCTGGGTTTACCCAGATG
1 TTGTATCGATACATTGCTCATTATATCGATACATTGTATCGATACATTATGGGTTTACCCAGATG
583295 TATCGATACATTTTGCA
66 TATCGATACATTTTGCA
* * *
583312 TTGTATCAATACATTGCTCATTGTATCGACACATTGTATCGATACATTATGGGTTTACCCAGATG
1 TTGTATCGATACATTGCTCATTATATCGATACATTGTATCGATACATTATGGGTTTACCCAGATG
583377 TATCGATACATTTTGCA
66 TATCGATACATTTTGCA
583394 TTGTATCGATACATTGCTCATTATATCGATACA
1 TTGTATCGATACATTGCTCATTATATCGATACA
583427 ATTTACAATG
Statistics
Matches: 105, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
82 105 1.00
ACGTcount: A:0.27, C:0.18, G:0.16, T:0.39
Consensus pattern (82 bp):
TTGTATCGATACATTGCTCATTATATCGATACATTGTATCGATACATTATGGGTTTACCCAGATG
TATCGATACATTTTGCA
Found at i:583346 original size:13 final size:13
Alignment explanation
Indices: 583330--583359 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
583320 ATACATTGCT
583330 CATTGTATCGACA
1 CATTGTATCGACA
*
583343 CATTGTATCGATA
1 CATTGTATCGACA
583356 CATT
1 CATT
583360 ATGGGTTTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.30, C:0.20, G:0.13, T:0.37
Consensus pattern (13 bp):
CATTGTATCGACA
Found at i:583400 original size:20 final size:19
Alignment explanation
Indices: 583375--583448 Score: 85
Period size: 20 Copynumber: 3.7 Consensus size: 19
583365 TTTACCCAGA
583375 TGTATCGATACATTTTGCAT
1 TGTATCGATACATTTT-CAT
*
583395 TGTATCGATACATTGCTCAT
1 TGTATCGATACATT-TTCAT
* * *
583415 TATATCGATACAATTTACAA
1 TGTATCGATAC-ATTTTCAT
583435 TGTATCGATACATT
1 TGTATCGATACATT
583449 CAGGCATTTT
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
19 3 0.07
20 39 0.85
21 4 0.09
ACGTcount: A:0.31, C:0.16, G:0.12, T:0.41
Consensus pattern (19 bp):
TGTATCGATACATTTTCAT
Found at i:585902 original size:79 final size:76
Alignment explanation
Indices: 585744--585910 Score: 217
Period size: 79 Copynumber: 2.2 Consensus size: 76
585734 TTTTCATCTC
* * *
585744 GGGGATACTCCAACCCCAATTTTATTTCCAAAACATCAATTTTTCATCAGGGATACTCTAACCCC
1 GGGGATACTCCAACCCCAACTTTATTTCCAAAACATCAATTTTTAATCAGGGATACTCCAACCCC
585809 GTTATTCTTGA
66 GTTATTCTTGA
* * * * * *
585820 GGGGATAATCCAACCCCAGCTTTATTTCTAAAATATTAATTTCTTATAATCGGGGATACTCCAAC
1 GGGGATACTCCAACCCCAACTTTATTTCCAAAACATCAA-TT-TT-TAATCAGGGATACTCCAAC
*
585885 CCCGTTATTTTTGA
63 CCCGTTATTCTTGA
585899 GGGGATACTCCA
1 GGGGATACTCCA
585911 GCCCTGTTAT
Statistics
Matches: 77, Mismatches: 11, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
76 33 0.43
77 2 0.03
78 2 0.03
79 40 0.52
ACGTcount: A:0.29, C:0.24, G:0.14, T:0.33
Consensus pattern (76 bp):
GGGGATACTCCAACCCCAACTTTATTTCCAAAACATCAATTTTTAATCAGGGATACTCCAACCCC
GTTATTCTTGA
Found at i:585903 original size:28 final size:28
Alignment explanation
Indices: 585871--585929 Score: 100
Period size: 28 Copynumber: 2.1 Consensus size: 28
585861 TCTTATAATC
585871 GGGGATACTCCAACCCCGTTATTTTTGA
1 GGGGATACTCCAACCCCGTTATTTTTGA
* *
585899 GGGGATACTCCAGCCCTGTTATTTTTGA
1 GGGGATACTCCAACCCCGTTATTTTTGA
585927 GGG
1 GGG
585930 TGTCGCGATG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.19, C:0.22, G:0.27, T:0.32
Consensus pattern (28 bp):
GGGGATACTCCAACCCCGTTATTTTTGA
Found at i:586965 original size:79 final size:81
Alignment explanation
Indices: 586875--587078 Score: 256
Period size: 79 Copynumber: 2.6 Consensus size: 81
586865 AGATAGTAAC
* * *
586875 AGGGTTGGAGTATCCCCTTGAAAATAACGGGGTTGGAGTATCCCCA-ATTGTGAAAAATCGATGA
1 AGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCAGATTATGAAAAATCAAT-A
* *
586939 -TTT-GGAAATAAAATCG
65 TTTTAGG-AACAAAACCG
* * * *
586955 -GGGTTGGAGTATCTCCTCGGAGATAACGGGGTTGGAGTAT-CCCAGATTATGAGAAATCAATAT
1 AGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCAGATTATGAAAAATCAATAT
*
587018 TTTAGGAACAAAGCCG
66 TTTAGGAACAAAACCG
*
587034 AGGGTTGGAGTATCCCCTCGAAAATAACAGGGTTGGAGTATCCCC
1 AGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCC
587079 GATGATTAAC
Statistics
Matches: 105, Mismatches: 14, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
78 5 0.05
79 59 0.56
80 38 0.36
81 3 0.03
ACGTcount: A:0.31, C:0.16, G:0.28, T:0.25
Consensus pattern (81 bp):
AGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCAGATTATGAAAAATCAATAT
TTTAGGAACAAAACCG
Found at i:587074 original size:28 final size:28
Alignment explanation
Indices: 587034--587105 Score: 94
Period size: 27 Copynumber: 2.6 Consensus size: 28
587024 AACAAAGCCG
587034 AGGGTTGGAGTATCCCCTCGA-AAATAAC
1 AGGGTTGGAGTATCCCC-CGATAAATAAC
* *
587062 AGGGTTGGAGTAT-CCCCGATGATTAAC
1 AGGGTTGGAGTATCCCCCGATAAATAAC
*
587089 GGGGTTGGAGTATCCCC
1 AGGGTTGGAGTATCCCC
587106 AATTGTGAAA
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
26 3 0.08
27 20 0.51
28 16 0.41
ACGTcount: A:0.25, C:0.21, G:0.31, T:0.24
Consensus pattern (28 bp):
AGGGTTGGAGTATCCCCCGATAAATAAC
Found at i:587148 original size:107 final size:108
Alignment explanation
Indices: 586955--587153 Score: 237
Period size: 107 Copynumber: 1.9 Consensus size: 108
586945 AATAAAATCG
*
586955 GGGTTGGAGTATCTCCTCGGAGATAACGGGGTTGGAGTATCCCAGATTATGAGAAATCAATATTT
1 GGGTTGGAGTATCTCCTCGGAGATAACGGGGTTGGAGTATCCCAGATTATGAAAAATCAATATTT
* *
587020 TAGGAACAAAGCCGAGGGTTGGAGTATCCCCTCGAAAATAACA
66 TAGGAACAAAACCGAGAGTTGGAGTATCCCCTCGAAAATAACA
* * * *
587063 GGGTTGGAGTATC-CC-C-GATGATTAACGGGGTTGGAGTATCCCCA-ATTGTGAAAAATTAGTG
1 GGGTTGGAGTATCTCCTCGGA-GA-TAACGGGGTTGGAGTAT-CCCAGATTATGAAAAATCAATA
* * *
587124 TTTTTGGAAATAAAATCG-GAGTTGGAGTAT
63 TTTTAGG-AACAAAACCGAGAGTTGGAGTAT
587154 TCCCGATTAA
Statistics
Matches: 77, Mismatches: 10, Indels: 9
0.80 0.10 0.09
Matches are distributed among these distances:
105 2 0.03
106 3 0.04
107 48 0.62
108 24 0.31
ACGTcount: A:0.30, C:0.14, G:0.29, T:0.27
Consensus pattern (108 bp):
GGGTTGGAGTATCTCCTCGGAGATAACGGGGTTGGAGTATCCCAGATTATGAAAAATCAATATTT
TAGGAACAAAACCGAGAGTTGGAGTATCCCCTCGAAAATAACA
Found at i:587240 original size:51 final size:50
Alignment explanation
Indices: 587088--587274 Score: 230
Period size: 51 Copynumber: 3.6 Consensus size: 50
587078 CGATGATTAA
* * * *
587088 CGGGGTTGGAGTATCCCCAATTGTGAAAAATTAGTGTTTTTGGAAATAAAAT
1 CGGGGTTGAAGTATCCCCGATTATGAAAAATTAGTG-TTTT-GAAATAAAAC
* * * * * *
587140 CGGAGTTGGAGTATTCCCGATTAAAGGAAAATTGGTGTTTTGAAAATAAAAC
1 CGGGGTTGAAGTATCCCCGATT-ATGAAAAATTAGTGTTTTG-AAATAAAAC
*
587192 CGGGGTTGAAGTATCCCCGATTGTGAAAAATTAGTGTTTTAGAAATAAAAC
1 CGGGGTTGAAGTATCCCCGATTATGAAAAATTAGTGTTTT-GAAATAAAAC
587243 CGGGGTTGAAGTATCCCCGATTATGAAAAATT
1 CGGGGTTGAAGTATCCCCGATTATGAAAAATT
587275 GAGAAACTTA
Statistics
Matches: 116, Mismatches: 16, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
51 55 0.47
52 51 0.44
53 10 0.09
ACGTcount: A:0.34, C:0.11, G:0.25, T:0.30
Consensus pattern (50 bp):
CGGGGTTGAAGTATCCCCGATTATGAAAAATTAGTGTTTTGAAATAAAAC
Found at i:589635 original size:20 final size:21
Alignment explanation
Indices: 589610--589658 Score: 64
Period size: 20 Copynumber: 2.4 Consensus size: 21
589600 AAACTTCCCA
589610 GATGTATTGATACAAAG-ATC
1 GATGTATTGATACAAAGTATC
* *
589630 GATGTATCGATACAATGTATC
1 GATGTATTGATACAAAGTATC
*
589651 GATATATT
1 GATGTATT
589659 TCCTTAATAT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
20 15 0.62
21 9 0.38
ACGTcount: A:0.37, C:0.10, G:0.18, T:0.35
Consensus pattern (21 bp):
GATGTATTGATACAAAGTATC
Found at i:589770 original size:22 final size:21
Alignment explanation
Indices: 589709--589770 Score: 74
Period size: 21 Copynumber: 3.0 Consensus size: 21
589699 AGCGATACAT
* *
589709 TGTATCGATAC-ATAACT-TA
1 TGTATCGATACAATTACTGAA
589728 TGTATCGATACAATTACTGAA
1 TGTATCGATACAATTACTGAA
*
589749 TGTATCGATACAAATTATTGAA
1 TGTATCGATAC-AATTACTGAA
589771 ATTCAAAATT
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
19 11 0.30
20 5 0.14
21 12 0.32
22 9 0.24
ACGTcount: A:0.39, C:0.13, G:0.13, T:0.35
Consensus pattern (21 bp):
TGTATCGATACAATTACTGAA
Found at i:590645 original size:43 final size:42
Alignment explanation
Indices: 590591--590689 Score: 103
Period size: 42 Copynumber: 2.3 Consensus size: 42
590581 AATAAAGAGC
* *
590591 GTCCTACTCTTTGAAGACAAAGGAGAAA-AGGAAAACGAAA-TGT
1 GTCCTGCTCTTTGAAGACAAA--AGAAAGAGGAAAA-GAAAGTGA
* * * *
590634 GTCCTGTTCTTTGAGGCCAAAAGAAAGAGGAAAATAAAGTGA
1 GTCCTGCTCTTTGAAGACAAAAGAAAGAGGAAAAGAAAGTGA
590676 GTCCTGCTCTTTGA
1 GTCCTGCTCTTTGA
590690 GGACTACAAA
Statistics
Matches: 47, Mismatches: 7, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
41 8 0.17
42 22 0.47
43 17 0.36
ACGTcount: A:0.37, C:0.15, G:0.24, T:0.23
Consensus pattern (42 bp):
GTCCTGCTCTTTGAAGACAAAAGAAAGAGGAAAAGAAAGTGA
Found at i:590773 original size:62 final size:56
Alignment explanation
Indices: 590676--590866 Score: 235
Period size: 55 Copynumber: 3.3 Consensus size: 56
590666 AATAAAGTGA
** *
590676 GTCCTGCTCTTTGAGGACTACAAAGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGGC
1 GTCCTGCTCTTTGAGGACTTGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAG----A--C
* *
590738 GTCCTGTTCTTTGAGGACTTGAGGGTGCCACCAACTTGTGTGGGCTTT-AAAAGAC
1 GTCCTGCTCTTTGAGGACTTGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAC
* *
590793 GTCATGCTCTTTGAGGAC-TGAAAGGTGCCACCAACTTGTGTGGGCTTTG-AAAGGC
1 GTCCTGCTCTTTGAGGACTTG-AAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAC
590848 GTCCTGCTCTTTGAGGACT
1 GTCCTGCTCTTTGAGGACT
590867 AAAGGATGAA
Statistics
Matches: 116, Mismatches: 10, Indels: 12
0.84 0.07 0.09
Matches are distributed among these distances:
54 2 0.02
55 65 0.56
57 1 0.01
61 5 0.04
62 43 0.37
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (56 bp):
GTCCTGCTCTTTGAGGACTTGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAC
Found at i:591032 original size:155 final size:155
Alignment explanation
Indices: 590736--591107 Score: 542
Period size: 155 Copynumber: 2.4 Consensus size: 155
590726 AAAGAAAAAG
* * * *
590736 GCGTCCTGTTCTTTGAGGACTTGAGGGTGCCACCAACTTGTGTGGGCTTTAAAA-G---A--CGT
1 GCGTCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCAT
* * * * *
590795 CATGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTT
66 CCTACTCTTTGAGGACTGAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAGGCATCATGCTCTTT
590860 GAGGACTAAAGGATGAAAAGAGAGA
131 GAGGACTAAAGGATGAAAAGAGAGA
* *
590885 GCGTTCTGCTCTTTGAGAACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCAT
1 GCGTCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCAT
*
590950 CCTACTCTTTGAGGACTGAGAA-GTGCCACCAACTCGTGTGGGCTTTGAAAGGCATCATGTTCTT
66 CCTACTCTTTGAGGACTGA-AAGGTGCCACCAACTCGTGTGGGCTTTGAAAGGCATCATGCTCTT
* * *
591014 TGAGGATTGAAGGGTGAAAAGAGAGA
130 TGAGGACTAAAGGATGAAAAGAGAGA
*
591040 GCATCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCAT
1 GCGTCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCAT
591105 CCT
66 CCT
591108 GCTCAACTTT
Statistics
Matches: 198, Mismatches: 18, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
149 49 0.25
150 1 0.01
153 1 0.01
155 145 0.73
156 2 0.01
ACGTcount: A:0.26, C:0.19, G:0.29, T:0.26
Consensus pattern (155 bp):
GCGTCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCAT
CCTACTCTTTGAGGACTGAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAGGCATCATGCTCTTT
GAGGACTAAAGGATGAAAAGAGAGA
Found at i:591915 original size:212 final size:213
Alignment explanation
Indices: 591500--591925 Score: 730
Period size: 212 Copynumber: 2.0 Consensus size: 213
591490 AAACCTTTGG
*
591500 ACAATTGAAATAGCTCATGTTGGGCATTTTAATCTAGATCTAATTTACATCTTAACCCAACATAC
1 ACAATTGAAATAGCTCATGTTGAGCATTTTAATCTAGATCTAATTTACATCTTAACCCAACATAC
*
591565 ATCAATGACGGCATTCAAAACCAAACTCAACATAAGTCCAATATCTTCTTTTTTTCTCTGATACA
66 ATCAATGACGGCATTCAAAACCAAACTCAACATAAGTCCAATATCTTCTTTTTTTCTCTAATACA
*
591630 AGGAATATTCTCCAATGAATATCTTTCTTCTACATTTTTAGCTATCTCTTTAAGTAACATTTTTT
131 AGGAATATTCTCCAATGAACATCTTTCTTCTACATTTTTAGCTATCTCTTTAAGTAACATTTTTT
* *
591695 CTTCCTAATTCTTTGCTA
196 CCTCCTAATTCTATGCTA
591713 ACAATTGAAATAGCTCATGTTGAGC-TTTTAATCTAGATCTAATTTACATCTTAACCCAACATAC
1 ACAATTGAAATAGCTCATGTTGAGCATTTTAATCTAGATCTAATTTACATCTTAACCCAACATAC
* *
591777 ATCACTGACGGCATTCAAAACCAAACTCAACATAAGTCCAATGTCTTC-TTTTTTCTCTAATACA
66 ATCAATGACGGCATTCAAAACCAAACTCAACATAAGTCCAATATCTTCTTTTTTTCTCTAATACA
* * * *
591841 AGGAATGTTCTCCGATGAACATCTTTCTTCTACATTTTTAGCTATCTCTTTAGGTATCATTTTTC
131 AGGAATATTCTCCAATGAACATCTTTCTTCTACATTTTTAGCTATCTCTTTAAGTAACATTTTT-
591906 TCCTCCTAATTCTATGCTA
195 TCCTCCTAATTCTATGCTA
591925 A
1 A
591926 AGTTCTTAAT
Statistics
Matches: 201, Mismatches: 11, Indels: 3
0.93 0.05 0.01
Matches are distributed among these distances:
211 74 0.37
212 103 0.51
213 24 0.12
ACGTcount: A:0.31, C:0.22, G:0.09, T:0.38
Consensus pattern (213 bp):
ACAATTGAAATAGCTCATGTTGAGCATTTTAATCTAGATCTAATTTACATCTTAACCCAACATAC
ATCAATGACGGCATTCAAAACCAAACTCAACATAAGTCCAATATCTTCTTTTTTTCTCTAATACA
AGGAATATTCTCCAATGAACATCTTTCTTCTACATTTTTAGCTATCTCTTTAAGTAACATTTTTT
CCTCCTAATTCTATGCTA
Found at i:596051 original size:50 final size:51
Alignment explanation
Indices: 595997--596253 Score: 195
Period size: 50 Copynumber: 5.0 Consensus size: 51
595987 AGTATCCTTT
*
595997 ATTGTGAG-AATCAATATTTTAGAAATAAGGCCGGGGTTGAAGTATCCCCG
1 ATTGTGAGAAATCAATATTTTAGAAATAAAGCCGGGGTTGAAGTATCCCCG
* *
596047 ATTGTGAGAAATCAATATTTTGGAAATAAAGCTGGGGTTGGAA-TATCCCCTCGG
1 ATTGTGAGAAATCAATATTTTAGAAATAAAGCCGGGGTT-GAAGTAT-CCC-C-G
** * ** * * * * *
596101 A-AATAACGAGGTTGGAGTATCCCTGATGAAAT-AA--CGGGGTTGGAGTATCCCCG
1 ATTGTGA-GA-AAT-CAATAT--TTTA-GAAATAAAGCCGGGGTTGAAGTATCCCCG
* * ** *
596154 ATTGTGAGAAATCAATATATTAGAAATAAGGTAGGGGTTG-AGTACCCCCG
1 ATTGTGAGAAATCAATATTTTAGAAATAAAGCCGGGGTTGAAGTATCCCCG
* *
596204 ATTGTGAGAAATCAATATTTTGGAAATAAAGCCGGGGTTGGAGTATCCCC
1 ATTGTGAGAAATCAATATTTTAGAAATAAAGCCGGGGTTGAAGTATCCCC
596254 TCGAAAATAA
Statistics
Matches: 157, Mismatches: 33, Indels: 33
0.70 0.15 0.15
Matches are distributed among these distances:
48 5 0.03
49 3 0.02
50 52 0.33
51 49 0.31
52 7 0.04
53 7 0.04
54 7 0.04
55 6 0.04
56 13 0.08
58 3 0.02
59 5 0.03
ACGTcount: A:0.32, C:0.14, G:0.27, T:0.27
Consensus pattern (51 bp):
ATTGTGAGAAATCAATATTTTAGAAATAAAGCCGGGGTTGAAGTATCCCCG
Found at i:596113 original size:28 final size:28
Alignment explanation
Indices: 596082--596152 Score: 92
Period size: 28 Copynumber: 2.5 Consensus size: 28
596072 ATAAAGCTGG
*
596082 GGTTGGAATATCCCCTCG-GAAATAACGA
1 GGTTGGAGTATCCCCT-GAGAAATAACGA
*
596110 GGTTGGAGTAT-CCCTGATGAAATAACGG
1 GGTTGGAGTATCCCCTGA-GAAATAACGA
596138 GGTTGGAGTATCCCC
1 GGTTGGAGTATCCCC
596153 GATTGTGAGA
Statistics
Matches: 38, Mismatches: 2, Indels: 5
0.84 0.04 0.11
Matches are distributed among these distances:
26 1 0.03
27 4 0.11
28 30 0.79
29 3 0.08
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.24
Consensus pattern (28 bp):
GGTTGGAGTATCCCCTGAGAAATAACGA
Found at i:596241 original size:157 final size:157
Alignment explanation
Indices: 595955--596282 Score: 498
Period size: 157 Copynumber: 2.1 Consensus size: 157
595945 AAAATCGGGA
* *** *
595955 TTGGAGTATCCCCGTGAAAATAATGGGATTGGAGTATCCTTTATTGTGAGAATCAATATTTTAGA
1 TTGGAGTATCCCCGTGAAAATAACGGGATTGGAGTATCCCCGATTGTGAGAATCAATATATTAGA
* * *
596020 AATAAGGCCGGGGTTGAAGTATCCCCGATTGTGAGAAATCAATATTTTGGAAATAAAGCTGGGGT
66 AATAAGGCAGGGGTTGAAGTACCCCCGATTGTGAGAAATCAATATTTTGGAAATAAAGCCGGGGT
*
596085 TGGAATATCCCCTCGGAAATAACGAGG
131 TGGAATATCCCCTCGAAAATAACGAGG
* *
596112 TTGGAGTATCCCTGATG-AAATAACGGGGTTGGAGTATCCCCGATTGTGAGAAATCAATATATTA
1 TTGGAGTATCCCCG-TGAAAATAACGGGATTGGAGTATCCCCGATTGTGAG-AATCAATATATTA
*
596176 GAAATAAGGTAGGGGTTG-AGTACCCCCGATTGTGAGAAATCAATATTTTGGAAATAAAGCCGGG
64 GAAATAAGGCAGGGGTTGAAGTACCCCCGATTGTGAGAAATCAATATTTTGGAAATAAAGCCGGG
* *
596240 GTTGGAGTATCCCCTCGAAAATAACGGGG
129 GTTGGAATATCCCCTCGAAAATAACGAGG
596269 TTGGAGTATCCCCG
1 TTGGAGTATCCCCG
596283 ATTGTGAGAA
Statistics
Matches: 154, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
157 124 0.81
158 30 0.19
ACGTcount: A:0.31, C:0.15, G:0.27, T:0.27
Consensus pattern (157 bp):
TTGGAGTATCCCCGTGAAAATAACGGGATTGGAGTATCCCCGATTGTGAGAATCAATATATTAGA
AATAAGGCAGGGGTTGAAGTACCCCCGATTGTGAGAAATCAATATTTTGGAAATAAAGCCGGGGT
TGGAATATCCCCTCGAAAATAACGAGG
Found at i:596282 original size:79 final size:79
Alignment explanation
Indices: 596188--596804 Score: 713
Period size: 79 Copynumber: 7.8 Consensus size: 79
596178 AATAAGGTAG
* * * *
596188 GGGTT-GAGTACCCCCGATTGTGAGAAATCAATATTTTGGAAATAAAGCCGGGGTTGGAGTATCC
1 GGGTTGGAGTATCCCCGATTATGAGAAATTAATATTTTGGAAATAAAACCGGGGTTGGAGTATCC
*
596252 CCTCGAAAATAACG
66 CCTCGAAAATAACA
* * * * *
596266 GGGTTGGAGTATCCCCGATTGTGAGAAATCAATATTTTAGAAATAAAATCAGGGTTGGAGTATCC
1 GGGTTGGAGTATCCCCGATTATGAGAAATTAATATTTTGGAAATAAAACCGGGGTTGGAGTATCC
*
596331 CCT-TAGAAATAAC-
66 CCTCGA-AAATAACA
* * * * * * *
596344 GGGATTGGAGTATTCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACCGGGTTTTGAGTATC
1 GGG-TTGGAGTATCCCCGATTATGAGAAATTAATATTTTGGAAATAAAACCGGGGTTGGAGTATC
* *
596409 CCCTCGAAAATAGCG
65 CCCTCGAAAATAACA
*
596424 GGGTTGGAGTATTCCCGATTATGAGAAATTAATATTTTGGAAATAAAACCGGGGTTGGAGTATCC
1 GGGTTGGAGTATCCCCGATTATGAGAAATTAATATTTTGGAAATAAAACCGGGGTTGGAGTATCC
*
596489 CCT-TAGAAATAACA
66 CCTCGA-AAATAACA
* * * * * * * * *
596503 GGATTGGAGTATTCCCGATTATGAAAAATTGATGTTTTTGAAATAAAATCGGGGTTTGAGTGTCC
1 GGGTTGGAGTATCCCCGATTATGAGAAATTAATATTTTGGAAATAAAACCGGGGTTGGAGTATCC
*
596568 CCTCGAAATTAACA
66 CCTCGAAAATAACA
* * * * * *
596582 GGGTTAGAGTATCCCCGATTATAAGAAATTAATATTTTGAAAATAAAGCTGGGGTTGGAATATCC
1 GGGTTGGAGTATCCCCGATTATGAGAAATTAATATTTTGGAAATAAAACCGGGGTTGGAGTATCC
*
596647 CCT-TAGAAATAACA
66 CCTCGA-AAATAACA
* * * * * * * *
596661 GGATTGGAGTATTCCCGATGATGAAAAATTGATGTTTTAGAAATAAAACCGAGGTTGGAGTATCC
1 GGGTTGGAGTATCCCCGATTATGAGAAATTAATATTTTGGAAATAAAACCGGGGTTGGAGTATCC
*
596726 CTTCGAAAATAACA
66 CCTCGAAAATAACA
* *
596740 GGGTTGGAGTATCCCCGATTATGAGAAATTAATATTTTGGGAATAAAGCCGGGGTTGGAGTATCC
1 GGGTTGGAGTATCCCCGATTATGAGAAATTAATATTTTGGAAATAAAACCGGGGTTGGAGTATCC
596805 TCGATTGTGG
Statistics
Matches: 450, Mismatches: 80, Indels: 17
0.82 0.15 0.03
Matches are distributed among these distances:
78 11 0.02
79 433 0.96
80 6 0.01
ACGTcount: A:0.33, C:0.14, G:0.24, T:0.29
Consensus pattern (79 bp):
GGGTTGGAGTATCCCCGATTATGAGAAATTAATATTTTGGAAATAAAACCGGGGTTGGAGTATCC
CCTCGAAAATAACA
Found at i:596413 original size:158 final size:158
Alignment explanation
Indices: 596221--596804 Score: 898
Period size: 158 Copynumber: 3.7 Consensus size: 158
596211 GAAATCAATA
* * *
596221 TTTTGGAAATAAAGCCGGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATT
1 TTTTAGAAATAAAACCGGGGTTGGAGTATCCCCTCGAAAATAACAGGGTTGGAGTATCCCCGATT
* * * * * *
596286 GTGAGAAATCAATATTTTAGAAATAAAATCAGGGTTGGAGTATCCCCTTAGAAATAACGGGATTG
66 ATGAGAAATTAATATTTTGGAAATAAAACCGGGGTTGGAGTATCCCCTTAGAAATAACAGGATTG
596351 GAGTATTCCCGATTATGAAAAATTGATG
131 GAGTATTCCCGATTATGAAAAATTGATG
* * * * *
596379 TTTTAGAAATAAAACCGGGTTTTGAGTATCCCCTCGAAAATAGCGGGGTTGGAGTATTCCCGATT
1 TTTTAGAAATAAAACCGGGGTTGGAGTATCCCCTCGAAAATAACAGGGTTGGAGTATCCCCGATT
596444 ATGAGAAATTAATATTTTGGAAATAAAACCGGGGTTGGAGTATCCCCTTAGAAATAACAGGATTG
66 ATGAGAAATTAATATTTTGGAAATAAAACCGGGGTTGGAGTATCCCCTTAGAAATAACAGGATTG
596509 GAGTATTCCCGATTATGAAAAATTGATG
131 GAGTATTCCCGATTATGAAAAATTGATG
* * * * * *
596537 TTTTTGAAATAAAATCGGGGTTTGAGTGTCCCCTCGAAATTAACAGGGTTAGAGTATCCCCGATT
1 TTTTAGAAATAAAACCGGGGTTGGAGTATCCCCTCGAAAATAACAGGGTTGGAGTATCCCCGATT
* * * * *
596602 ATAAGAAATTAATATTTTGAAAATAAAGCTGGGGTTGGAATATCCCCTTAGAAATAACAGGATTG
66 ATGAGAAATTAATATTTTGGAAATAAAACCGGGGTTGGAGTATCCCCTTAGAAATAACAGGATTG
*
596667 GAGTATTCCCGATGATGAAAAATTGATG
131 GAGTATTCCCGATTATGAAAAATTGATG
* *
596695 TTTTAGAAATAAAACCGAGGTTGGAGTATCCCTTCGAAAATAACAGGGTTGGAGTATCCCCGATT
1 TTTTAGAAATAAAACCGGGGTTGGAGTATCCCCTCGAAAATAACAGGGTTGGAGTATCCCCGATT
* *
596760 ATGAGAAATTAATATTTTGGGAATAAAGCCGGGGTTGGAGTATCC
66 ATGAGAAATTAATATTTTGGAAATAAAACCGGGGTTGGAGTATCC
596805 TCGATTGTGG
Statistics
Matches: 386, Mismatches: 40, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
158 386 1.00
ACGTcount: A:0.34, C:0.13, G:0.24, T:0.29
Consensus pattern (158 bp):
TTTTAGAAATAAAACCGGGGTTGGAGTATCCCCTCGAAAATAACAGGGTTGGAGTATCCCCGATT
ATGAGAAATTAATATTTTGGAAATAAAACCGGGGTTGGAGTATCCCCTTAGAAATAACAGGATTG
GAGTATTCCCGATTATGAAAAATTGATG
Found at i:596921 original size:51 final size:51
Alignment explanation
Indices: 596793--596913 Score: 181
Period size: 51 Copynumber: 2.4 Consensus size: 51
596783 TAAAGCCGGG
* *
596793 GTTGGAGTATCCTCGATTGTGGAAAATCAGTTGTTTGAAAATAAAATCGGA
1 GTTGGAGTATCCTCGATTATGGAAAATCAGGTGTTTGAAAATAAAATCGGA
* * *
596844 GTTGGAGTATCCCCGATTATGGAAAAT-GGGTGTTTTAGAAATAAAATCGGA
1 GTTGGAGTATCCTCGATTATGGAAAATCAGGTGTTTGA-AAATAAAATCGGA
596895 GTTGGAGTATCCTCGATTA
1 GTTGGAGTATCCTCGATTA
596914 AGAAAAATTG
Statistics
Matches: 63, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
50 7 0.11
51 56 0.89
ACGTcount: A:0.31, C:0.11, G:0.26, T:0.31
Consensus pattern (51 bp):
GTTGGAGTATCCTCGATTATGGAAAATCAGGTGTTTGAAAATAAAATCGGA
Found at i:599504 original size:12 final size:12
Alignment explanation
Indices: 599463--599498 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
599453 ATAAAGTGTT
599463 TGAAAAAAAAAA
1 TGAAAAAAAAAA
*
599475 TGAAAAAAAAAT
1 TGAAAAAAAAAA
599487 TGAAAAAAAAAA
1 TGAAAAAAAAAA
599499 AAAAAATTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.81, C:0.00, G:0.08, T:0.11
Consensus pattern (12 bp):
TGAAAAAAAAAA
Found at i:599553 original size:21 final size:21
Alignment explanation
Indices: 599507--599563 Score: 71
Period size: 21 Copynumber: 2.7 Consensus size: 21
599497 AAAAAAAATT
**
599507 AAATGTATCGATACATTTGTA
1 AAATGTATCGATACATTCCTA
*
599528 GAATGTATCGATACA-TCCTA
1 AAATGTATCGATACATTCCTA
599548 CAAATGTATCGATACA
1 -AAATGTATCGATACA
599564 GGGTCCCAAC
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
20 3 0.10
21 28 0.90
ACGTcount: A:0.39, C:0.16, G:0.14, T:0.32
Consensus pattern (21 bp):
AAATGTATCGATACATTCCTA
Found at i:599623 original size:19 final size:19
Alignment explanation
Indices: 599599--599666 Score: 85
Period size: 19 Copynumber: 3.9 Consensus size: 19
599589 AATTCAACAA
599599 TTTGTATCGATACATAAGT
1 TTTGTATCGATACATAAGT
599618 TTTGTATCGATAC--AA--
1 TTTGTATCGATACATAAGT
599633 --TGTATCGATACATAAGT
1 TTTGTATCGATACATAAGT
*
599650 ATTGTATCGATACATAA
1 TTTGTATCGATACATAA
599667 TTAGCTACTG
Statistics
Matches: 43, Mismatches: 0, Indels: 12
0.78 0.00 0.22
Matches are distributed among these distances:
13 11 0.26
15 2 0.05
17 2 0.05
19 28 0.65
ACGTcount: A:0.35, C:0.12, G:0.15, T:0.38
Consensus pattern (19 bp):
TTTGTATCGATACATAAGT
Found at i:599638 original size:13 final size:13
Alignment explanation
Indices: 599620--599644 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
599610 ACATAAGTTT
599620 TGTATCGATACAA
1 TGTATCGATACAA
599633 TGTATCGATACA
1 TGTATCGATACA
599645 TAAGTATTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:599642 original size:32 final size:32
Alignment explanation
Indices: 599601--599663 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
599591 TTCAACAATT
*
599601 TGTATCGATACATAAGTTTTGTATCGATACAA
1 TGTATCGATACATAAGTATTGTATCGATACAA
599633 TGTATCGATACATAAGTATTGTATCGATACA
1 TGTATCGATACATAAGTATTGTATCGATACA
599664 TAATTAGCTA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.35, C:0.13, G:0.16, T:0.37
Consensus pattern (32 bp):
TGTATCGATACATAAGTATTGTATCGATACAA
Found at i:599724 original size:13 final size:13
Alignment explanation
Indices: 599706--599731 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
599696 CATTTTTCTG
599706 TGTATCGATACAT
1 TGTATCGATACAT
599719 TGTATCGATACAT
1 TGTATCGATACAT
599732 GGATCTTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:599743 original size:33 final size:33
Alignment explanation
Indices: 599686--599752 Score: 89
Period size: 33 Copynumber: 2.0 Consensus size: 33
599676 GCCAAGGAAA
***
599686 TGTATCGATACATTTTTCTGTGTATCGATACAT
1 TGTATCGATACATGGATCTGTGTATCGATACAT
* *
599719 TGTATCGATACATGGATCTTTGTATTGATACAT
1 TGTATCGATACATGGATCTGTGTATCGATACAT
599752 T
1 T
599753 TGGAAATTTT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.25, C:0.13, G:0.16, T:0.45
Consensus pattern (33 bp):
TGTATCGATACATGGATCTGTGTATCGATACAT
Found at i:602264 original size:28 final size:27
Alignment explanation
Indices: 602197--602269 Score: 94
Period size: 27 Copynumber: 2.7 Consensus size: 27
602187 CTTCACAATC
* *
602197 GGGGACACTCCAACCCCGTTAATCATC
1 GGGGATACTCCAACCCCGTTAATCATA
*
602224 GGGGATACTCCAACCCCGTTATTTC-TGA
1 GGGGATACTCCAACCCCGTTA-ATCAT-A
602252 GGGGATACTCCAACCCCG
1 GGGGATACTCCAACCCCG
602270 ACTTTATTTT
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
27 21 0.51
28 20 0.49
ACGTcount: A:0.23, C:0.34, G:0.22, T:0.21
Consensus pattern (27 bp):
GGGGATACTCCAACCCCGTTAATCATA
Found at i:602314 original size:51 final size:51
Alignment explanation
Indices: 602252--602422 Score: 198
Period size: 51 Copynumber: 3.3 Consensus size: 51
602242 TTATTTCTGA
* * *
602252 GGGGATACTCCAACCCCGACTTTATTTTCAAAATATCGATTTTTCATAATC
1 GGGGATACTCCAACCCCGATTTTATTTTCAAAATACCAATTTTTCATAATC
* * * * *
602303 GGGGATACTCCAACCCCGGTTTTATTTTCACAACACCAATTTCTCCTTTAATC
1 GGGGATACTCCAACCCCGATTTTATTTTCAAAATACCAATTT-TTC-ATAATC
** * *
602356 GGGGATACTCCAATTCCGATTTTATTTCCAAAAATACCAATTTTTCACAATC
1 GGGGATACTCCAACCCCGATTTTATTTTC-AAAATACCAATTTTTCATAATC
*
602408 GAGGATACTCCAACC
1 GGGGATACTCCAACC
602423 TCGTTATTTC
Statistics
Matches: 97, Mismatches: 20, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
51 36 0.37
52 18 0.19
53 32 0.33
54 11 0.11
ACGTcount: A:0.29, C:0.26, G:0.12, T:0.33
Consensus pattern (51 bp):
GGGGATACTCCAACCCCGATTTTATTTTCAAAATACCAATTTTTCATAATC
Found at i:602441 original size:28 final size:28
Alignment explanation
Indices: 602405--602486 Score: 96
Period size: 28 Copynumber: 2.9 Consensus size: 28
602395 ATTTTTCACA
*
602405 ATCGAGGATACTCCAACCTCGTTATTTC
1 ATCGGGGATACTCCAACCTCGTTATTTC
* *
602433 ATCGGGGATACTCCAACCCCGTTACTTC
1 ATCGGGGATACTCCAACCTCGTTATTTC
*
602461 --CGAGGGAACACTCCAACCTCGTTATT
1 ATCG-GGG-ATACTCCAACCTCGTTATT
602487 ATCTCCAAAA
Statistics
Matches: 46, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
26 2 0.04
27 3 0.07
28 41 0.89
ACGTcount: A:0.24, C:0.32, G:0.17, T:0.27
Consensus pattern (28 bp):
ATCGGGGATACTCCAACCTCGTTATTTC
Found at i:604071 original size:20 final size:20
Alignment explanation
Indices: 604042--604097 Score: 103
Period size: 20 Copynumber: 2.8 Consensus size: 20
604032 AAAAATGCGT
604042 AAATGTATCGATACATTGTA
1 AAATGTATCGATACATTGTA
*
604062 AAATGGATCGATACATTGTA
1 AAATGTATCGATACATTGTA
604082 AAATGTATCGATACAT
1 AAATGTATCGATACAT
604098 CTGGGTAAAC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.41, C:0.11, G:0.16, T:0.32
Consensus pattern (20 bp):
AAATGTATCGATACATTGTA
Found at i:604183 original size:13 final size:13
Alignment explanation
Indices: 604165--604190 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
604155 ACAAAGATCG
604165 ATGTATCGATACA
1 ATGTATCGATACA
604178 ATGTATCGATACA
1 ATGTATCGATACA
604191 TTTCCTTGGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:605211 original size:61 final size:61
Alignment explanation
Indices: 605114--605715 Score: 601
Period size: 61 Copynumber: 10.2 Consensus size: 61
605104 GTGTGTCCCA
* *
605114 CTCTTTGAGGACT-GAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAGGCGTCTTG
1 CTCTTTGAGGACTGGAAAA-TGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAGGCGTCCTG
* * *
605175 CCCTTTGAGGACTGGAAGATGCCACCAACTTGTGTGGGCTTTGCAAAA-AGAAA-GCATCCTG
1 CTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTG-AAAAGA-AAAGGCGTCCTG
* * *
605236 CTCTTTGAGGACT-AAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAGGCTTCCTG
1 CTCTTTGAGGACTGGAAAA-TGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAGGCGTCCTG
* * * *
605297 CCCTTTGAGGACTGGAAGATGCCACCAACTTGTGTGGGCTTTGTAAAA-AGAAA-GCATCCTA
1 CTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTG-AAAAGA-AAAGGCGTCCTG
* * * * * *
605358 CTCTTTAAGGACT-AAAAAGTGCCACCAACTTTTGTTGGCTTTGCAAAGAGAAA-GCATCCTG
1 CTCTTTGAGGACTGGAAAA-TGCCACCAACTTGTGTGGGCTTTGAAAAGA-AAAGGCGTCCTG
* * *
605419 CTCTTTGAGGACAGGAAAATGCCACCAACTTATGTGGGCTTT-----G-AAAGGCGTCCTA
1 CTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAGGCGTCCTG
* * *
605474 CTCTTTGAGGACTAGAAAATGCCACCAACTCGTGTAGGCTTT-----G-AAA-GCGTCCTG
1 CTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAGGCGTCCTG
** * **
605528 CTCTTTGAGGACTGGAAAATGCCACCAACTCATGTGGGCTTTGAAAGGCGAAGGCGTCCTG
1 CTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAGGCGTCCTG
* * * * *
605589 CTTTTTGAAGACTAGAAAATGCCACCAACTTGTGTGGGCTTT-----G-AAATGCATCCTG
1 CTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAGGCGTCCTG
** * *
605644 CTCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGAAAAGGCGTCCTA
1 CTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAGGCGTCCTG
605705 CTCTTTGAGGA
1 CTCTTTGAGGA
605716 TTGAAAAGTG
Statistics
Matches: 458, Mismatches: 57, Indels: 52
0.81 0.10 0.09
Matches are distributed among these distances:
54 49 0.11
55 93 0.20
56 2 0.00
59 1 0.00
60 19 0.04
61 269 0.59
62 25 0.05
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (61 bp):
CTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAGGCGTCCTG
Found at i:605331 original size:122 final size:119
Alignment explanation
Indices: 605108--605725 Score: 694
Period size: 122 Copynumber: 5.2 Consensus size: 119
605098 AACGAAGTGT
* * * *
605108 GTCCCACTCTTTGAGGACTGAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAGGCGTCT
1 GTCCTACTCTTTGAGGACTAAAAAGTGCCACCAACTCGTGTGGGCTTTG-AAAGAAAA-GCATCC
*
605173 TGCCCTTTGAGGACTGGAAGATGCCACCAACTTGTGTGGGCTTTGCAAAAAGAAAGC
64 TGCTCTTTGAGGACTGGAAGATGCCACCAACTTGTGTGGGCTTTG-AAAAAGAAAGC
* * *
605230 ATCCTGCTCTTTGAGGACTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAGGCTTCC
1 GTCCTACTCTTTGAGGACTAAAAAGTGCCACCAACTCGTGTGGGCTTTG-AAAGAAAA-GCATCC
*
605295 TGCCCTTTGAGGACTGGAAGATGCCACCAACTTGTGTGGGCTTTGTAAAAAGAAAGC
64 TGCTCTTTGAGGACTGGAAGATGCCACCAACTTGTGTGGGCTTTG-AAAAAGAAAGC
* * ** *
605352 ATCCTACTCTTTAAGGACTAAAAAGTGCCACCAACTTTTGTTGGCTTTGCAAAGAGAAAGCATCC
1 GTCCTACTCTTTGAGGACTAAAAAGTGCCACCAACTCGTGTGGGCTTTG-AAAGA-AAAGCATCC
* * *
605417 TGCTCTTTGAGGACAGGAAAATGCCACCAACTTATGTGGGCTTTG--AAAG---GC
64 TGCTCTTTGAGGACTGGAAGATGCCACCAACTTGTGTGGGCTTTGAAAAAGAAAGC
* *
605468 GTCCTACTCTTTGAGGACTAGAAAA-TGCCACCAACTCGTGTAGGCTTT----G-AAAGCGTCCT
1 GTCCTACTCTTTGAGGACTA-AAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGAAAAGCATCCT
* ** ** *
605527 GCTCTTTGAGGACTGGAAAATGCCACCAACTCATGTGGGCTTTGAAAGGCGAAGGC
65 GCTCTTTGAGGACTGGAAGATGCCACCAACTTGTGTGGGCTTTGAAA-AAGAAAGC
* * * * *
605583 GTCCTGCTTTTTGAAGACTAGAAAA-TGCCACCAACTTGTGTGGGCTTT----GAAATGCATCCT
1 GTCCTACTCTTTGAGGACTA-AAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGAAAAGCATCCT
* *
605643 GCTCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGAA-AAGGC
65 GCTCTTTGAGGACTGGAAGATGCCACCAACTTGTGTGGGCTTTGAAA--AAGAAAGC
* *
605699 GTCCTACTCTTTGAGGATTGAAAAGTG
1 GTCCTACTCTTTGAGGACTAAAAAGTG
605726 GAAGGAGAAG
Statistics
Matches: 439, Mismatches: 46, Indels: 28
0.86 0.09 0.05
Matches are distributed among these distances:
109 51 0.12
111 2 0.00
112 1 0.00
115 50 0.11
116 113 0.26
117 5 0.01
119 4 0.01
122 210 0.48
123 3 0.01
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.26
Consensus pattern (119 bp):
GTCCTACTCTTTGAGGACTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGAAAAGCATCCTG
CTCTTTGAGGACTGGAAGATGCCACCAACTTGTGTGGGCTTTGAAAAAGAAAGC
Found at i:605492 original size:55 final size:55
Alignment explanation
Indices: 605414--605691 Score: 353
Period size: 55 Copynumber: 5.0 Consensus size: 55
605404 AGAGAAAGCA
*
605414 TCCTGCTCTTTGAGGAC-AGGAAAATGCCACCAACTTATGTGGGCTTTGAAAGGCG
1 TCCTGCTCTTTGAGGACTA-GAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* * *
605469 TCCTACTCTTTGAGGACTAGAAAATGCCACCAACTCGTGTAGGCTTTGAAA-GCG
1 TCCTGCTCTTTGAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* **
605523 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTCATGTGGGCTTTGAAAGGCGAAGGCG
1 TCCTGCTCTTTGAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTTG--A----AAGGCG
* * * *
605584 TCCTGCTTTTTGAAGACTAGAAAATGCCACCAACTTGTGTGGGCTTTGAAATGCA
1 TCCTGCTCTTTGAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* **
605639 TCCTGCTCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGG
1 TCCTGCTCTTTGAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGG
605692 AAAAGGCGTC
Statistics
Matches: 194, Mismatches: 21, Indels: 16
0.84 0.09 0.07
Matches are distributed among these distances:
54 47 0.24
55 96 0.49
56 2 0.01
59 1 0.01
60 2 0.01
61 46 0.24
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.27
Consensus pattern (55 bp):
TCCTGCTCTTTGAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCG
Found at i:605609 original size:170 final size:171
Alignment explanation
Indices: 605108--605690 Score: 613
Period size: 170 Copynumber: 3.3 Consensus size: 171
605098 AACGAAGTGT
*
605108 GTCCCACTCTTTGAGGACT-GAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAGGCGTC
1 GTCCTACTCTTTGAGGACTGGAAAA-TGCCACCAACTCGTGTGGGCTTT----AG-AAA-GCGTC
* * * * *
605172 TTGCCCTTTGAGGACTGGAAGATGCCACCAACTTGTGTGGGCTTTGCAAAAAGAAAGCATCCTGC
59 CTGCTCTTTGAGGACTGGAAAATGCCACCAACTTATGTGGGCTTTGCAAAGAGAAAGCATCCTGC
*
605237 TCTTTGAGGACTA-AAAAGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAGGC
124 TCTTTGAGGACTAGAAAA-TGCCACCAACTTGTGTGGGCTTT-----G-AAAGGC
* * * * * *
605291 TTCCTGCCCTTTGAGGACTGGAAGATGCCACCAACTTGTGTGGGCTTTGTAAAAAGAAAGCATCC
1 GTCCTACTCTTTGAGGACTGGAAAATGCCACCAACTCGTGTGGGC-TT-T----AGAAAGCGTCC
* * * * *
605356 TACTCTTTAAGGACT-AAAAAGTGCCACCAACTTTTGTTGGCTTTGCAAAGAGAAAGCATCCTGC
60 TGCTCTTTGAGGACTGGAAAA-TGCCACCAACTTATGTGGGCTTTGCAAAGAGAAAGCATCCTGC
*
605420 TCTTTGAGGAC-AGGAAAATGCCACCAACTTATGTGGGCTTTGAAAGGC
124 TCTTTGAGGACTA-GAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGC
* *
605468 GTCCTACTCTTTGAGGACTAGAAAATGCCACCAACTCGTGTAGGCTTT-GAAAGCGTCCTGCTCT
1 GTCCTACTCTTTGAGGACTGGAAAATGCCACCAACTCGTGTGGGCTTTAGAAAGCGTCCTGCTCT
* * * * *
605532 TTGAGGACTGGAAAATGCCACCAACTCATGTGGGCTTTG-AAAGGCGAAGGCGTCCTGCTTTTTG
66 TTGAGGACTGGAAAATGCCACCAACTTATGTGGGCTTTGCAAA-GAGAAAGCATCCTGCTCTTTG
* *
605596 AAGACTAGAAAATGCCACCAACTTGTGTGGGCTTTGAAATGC
130 AGGACTAGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGC
* * ** *
605638 ATCCTGCTCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTT-GAAAG
1 GTCCTACTCTTTGAGGACTGGAAAATGCCACCAACTCGTGTGGGCTTTAGAAAG
605691 GAAAAGGCGT
Statistics
Matches: 344, Mismatches: 47, Indels: 31
0.82 0.11 0.07
Matches are distributed among these distances:
169 3 0.01
170 143 0.42
171 5 0.01
175 1 0.00
176 2 0.01
177 44 0.13
178 1 0.00
182 4 0.01
183 122 0.35
184 13 0.04
185 6 0.02
ACGTcount: A:0.27, C:0.22, G:0.25, T:0.26
Consensus pattern (171 bp):
GTCCTACTCTTTGAGGACTGGAAAATGCCACCAACTCGTGTGGGCTTTAGAAAGCGTCCTGCTCT
TTGAGGACTGGAAAATGCCACCAACTTATGTGGGCTTTGCAAAGAGAAAGCATCCTGCTCTTTGA
GGACTAGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGC
Found at i:610088 original size:33 final size:33
Alignment explanation
Indices: 610044--610110 Score: 89
Period size: 33 Copynumber: 2.0 Consensus size: 33
610034 TTCAACGATT
*
610044 TGTATCGATACATAAAGTGTTGTATCGATACAA
1 TGTATCAATACATAAAGTGTTGTATCGATACAA
*** *
610077 TGTATCAATACATATTTTTTTGTATCGATACAA
1 TGTATCAATACATAAAGTGTTGTATCGATACAA
610110 T
1 T
610111 TTAAGCTACT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.34, C:0.12, G:0.13, T:0.40
Consensus pattern (33 bp):
TGTATCAATACATAAAGTGTTGTATCGATACAA
Found at i:610169 original size:13 final size:13
Alignment explanation
Indices: 610151--610175 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
610141 ATCACTTAAA
610151 TGTATCGATACAT
1 TGTATCGATACAT
610164 TGTATCGATACA
1 TGTATCGATACA
610176 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:610313 original size:52 final size:52
Alignment explanation
Indices: 610164--610314 Score: 214
Period size: 52 Copynumber: 2.9 Consensus size: 52
610154 ATCGATACAT
** * *
610164 TGTATCGATACACTGA-TCTTTGTATCGATACATGCAGGAAAATTTGCCCAGA
1 TGTATCGATACACT-ATTCAATGTATCGATACATGCAGGCAAATTTTCCCAGA
* ** *
610216 TGTATCGATACATTATAAAATGTATCGATACATACAGGCAAATTTTCCCAGA
1 TGTATCGATACACTATTCAATGTATCGATACATGCAGGCAAATTTTCCCAGA
610268 TGTATCGATACACTATTCAATGTATCGATACATGCAGGCAAATTTTC
1 TGTATCGATACACTATTCAATGTATCGATACATGCAGGCAAATTTTC
610315 ATATTTCGGG
Statistics
Matches: 86, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
51 1 0.01
52 85 0.99
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.32
Consensus pattern (52 bp):
TGTATCGATACACTATTCAATGTATCGATACATGCAGGCAAATTTTCCCAGA
Found at i:620506 original size:4 final size:4
Alignment explanation
Indices: 620499--620525 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
620489 CAAAACAAAC
620499 AAAT AAAT AAAT AAAT AAAT AAAT AAA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAA
620526 CACCGCAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (4 bp):
AAAT
Found at i:622737 original size:51 final size:51
Alignment explanation
Indices: 622665--622941 Score: 233
Period size: 51 Copynumber: 5.4 Consensus size: 51
622655 GTGAAAATAA
* * *
622665 CGGGATTGGAGTATCCTCGATTGTGAGAAATCAATATTTTAGAAATAAGGC
1 CGGGGTTGGAGTATCCCCGATTGTGAGAAATCAATATTTTAGAAATAAAGC
* ** * * *
622716 TGGGGTTTAAGTATCCCCGATTGTGAGAAATTAGTATTTTGGAAATAAAGC
1 CGGGGTTGGAGTATCCCCGATTGTGAGAAATCAATATTTTAGAAATAAAGC
* * * * ** *
622767 CGGGGTTGGAGTATCCCC--TCG-GAAATAAAGGGGTTGGAGTATCCTCGATAATATAA--
1 CGGGGTTGGAGTATCCCCGATTGTG--AGAAA-----T-CAATATTTTAGA-AATA-AAGC
* * * *
622823 TGGGGTTGGAGTATCCCCGATTGTGAAAAATCAATATATTAGAAATAAGGC
1 CGGGGTTGGAGTATCCCCGATTGTGAGAAATCAATATTTTAGAAATAAAGC
*
622874 CGGGGTT-GAGTATCCCCGATTGTGAGAAATCAATATTTTGGAAATAAAGC
1 CGGGGTTGGAGTATCCCCGATTGTGAGAAATCAATATTTTAGAAATAAAGC
622924 CGGGGTTGGAGTATCCCC
1 CGGGGTTGGAGTATCCCC
622942 TCGAAAATAA
Statistics
Matches: 178, Mismatches: 32, Indels: 32
0.74 0.13 0.13
Matches are distributed among these distances:
48 1 0.01
49 3 0.02
50 54 0.30
51 80 0.45
52 1 0.01
55 1 0.01
56 25 0.14
57 8 0.04
58 4 0.02
59 1 0.01
ACGTcount: A:0.31, C:0.14, G:0.27, T:0.28
Consensus pattern (51 bp):
CGGGGTTGGAGTATCCCCGATTGTGAGAAATCAATATTTTAGAAATAAAGC
Found at i:622799 original size:28 final size:30
Alignment explanation
Indices: 622768--622840 Score: 102
Period size: 28 Copynumber: 2.6 Consensus size: 30
622758 AAATAAAGCC
622768 GGGGTTGGAGTATCCCCTCGGA-AATA-AA-
1 GGGGTTGGAGTATCCCCTC-GATAATATAAT
622796 GGGGTTGGAGTAT--CCTCGATAATATAAT
1 GGGGTTGGAGTATCCCCTCGATAATATAAT
622824 GGGGTTGGAGTATCCCC
1 GGGGTTGGAGTATCCCC
622841 GATTGTGAAA
Statistics
Matches: 40, Mismatches: 0, Indels: 8
0.83 0.00 0.17
Matches are distributed among these distances:
25 2 0.05
26 8 0.20
27 2 0.05
28 26 0.65
30 2 0.05
ACGTcount: A:0.25, C:0.16, G:0.33, T:0.26
Consensus pattern (30 bp):
GGGGTTGGAGTATCCCCTCGATAATATAAT
Found at i:622944 original size:157 final size:159
Alignment explanation
Indices: 622637--622972 Score: 525
Period size: 157 Copynumber: 2.1 Consensus size: 159
622627 AAAATAAAAT
* * *
622637 AGGGATTGGAGTATCCCCG-TGAAAATAACGGGATTGGAGTATCCTCGATTGTGAGAAATCAATA
1 AGGGGTTGGAGTATCCCCGATGAAAATAACGGGATTGGAGTATCCCCGATTGTGAAAAATCAATA
* * * *
622701 TTTTAGAAATAAGGCTGGGGTTTAAGTATCCCCGATTGTGAGAAATTAGTATTTTGGAAATAAAG
66 TATTAGAAATAAGGCCGGGGTTTAAGTATCCCCGATTGTGAGAAATCAATATTTTGGAAATAAAG
*
622766 CCGGGGTTGGAGTATCCCCTCGGAAATAA
131 CCGGGGTTGGAGTATCCCCTCGAAAATAA
* * * *
622795 AGGGGTTGGAGTATCCTCGAT-AATATAATGGGGTTGGAGTATCCCCGATTGTGAAAAATCAATA
1 AGGGGTTGGAGTATCCCCGATGAAAATAACGGGATTGGAGTATCCCCGATTGTGAAAAATCAATA
*
622859 TATTAGAAATAAGGCCGGGG-TTGAGTATCCCCGATTGTGAGAAATCAATATTTTGGAAATAAAG
66 TATTAGAAATAAGGCCGGGGTTTAAGTATCCCCGATTGTGAGAAATCAATATTTTGGAAATAAAG
622923 CCGGGGTTGGAGTATCCCCTCGAAAATAA
131 CCGGGGTTGGAGTATCCCCTCGAAAATAA
*
622952 CGGGGTTGGAGTATCCCCGAT
1 AGGGGTTGGAGTATCCCCGAT
622973 TGTGAGAAAT
Statistics
Matches: 162, Mismatches: 15, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
157 88 0.54
158 73 0.45
159 1 0.01
ACGTcount: A:0.31, C:0.14, G:0.28, T:0.27
Consensus pattern (159 bp):
AGGGGTTGGAGTATCCCCGATGAAAATAACGGGATTGGAGTATCCCCGATTGTGAAAAATCAATA
TATTAGAAATAAGGCCGGGGTTTAAGTATCCCCGATTGTGAGAAATCAATATTTTGGAAATAAAG
CCGGGGTTGGAGTATCCCCTCGAAAATAA
Found at i:622968 original size:79 final size:80
Alignment explanation
Indices: 622874--623492 Score: 745
Period size: 79 Copynumber: 7.8 Consensus size: 80
622864 GAAATAAGGC
* * * *
622874 CGGGGTT-GAGTATCCCCGATTGTGAGAAATCAATATTTTGGAAATAAAGCCGGGGTTGGAGTAT
1 CGGGGTTGGAGTATCCCCGATTATGAGAAATTAATATTTTAGAAATAAAACCGGGGTTGGAGTAT
622938 CCCCTCGA-AAATAA
66 CCCCTCGAGAAATAA
* * * *
622952 CGGGGTTGGAGTATCCCCGATTGTGAGAAATCAATATTTTAGAAATTAAATCGGGGTTGGAGTAT
1 CGGGGTTGGAGTATCCCCGATTATGAGAAATTAATATTTTAGAAATAAAACCGGGGTTGGAGTAT
*
623017 CCCCT-TAGAAATAA
66 CCCCTCGAGAAATAA
* * * * *
623031 CGGGATTGGAGTATTCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAGTAT
1 CGGGGTTGGAGTATCCCCGATTATGAGAAATTAATATTTTAGAAATAAAACCGGGGTTGGAGTAT
*
623096 CCCCTC-AAAAATAA
66 CCCCTCGAGAAATAA
* * * * *
623110 CGGGGTTGGAGTATCCCCGATTATAAGAAATTAATATTTTGGAAATAAAGCTGAGGTTGGAGTAT
1 CGGGGTTGGAGTATCCCCGATTATGAGAAATTAATATTTTAGAAATAAAACCGGGGTTGGAGTAT
*
623175 CCCCT-TAGAAATAA
66 CCCCTCGAGAAATAA
* * * * * * *
623189 CAGGATTGGAGTATTCTCGATTATGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAGTAT
1 CGGGGTTGGAGTATCCCCGATTATGAGAAATTAATATTTTAGAAATAAAACCGGGGTTGGAGTAT
*
623254 --CCTCGATGAAAAAA
66 CCCCTCGA-GAAATAA
* * * * * *
623268 TGGGGTTGGAGTATCCCCGATTGTGAGAAATCAATATTGTAAAAATAAAATCGGGGTTGGAGTAT
1 CGGGGTTGGAGTATCCCCGATTATGAGAAATTAATATTTTAGAAATAAAACCGGGGTTGGAGTAT
* *
623333 TCCCT-TAGAAATAA
66 CCCCTCGAGAAATAA
** * * * *
623347 CGGGGTTGGAGTATTACCGATTATGAAAAATTGATGTTTTAGAAATAAAACC-AGGTTGGAGTAT
1 CGGGGTTGGAGTATCCCCGATTATGAGAAATTAATATTTTAGAAATAAAACCGGGGTTGGAGTAT
*
623411 CTCCTCGA-AAATAA
66 CCCCTCGAGAAATAA
* *
623425 CGGGGTTGGAGTATCCCCGATTATGAGAAATTAATATTTTGGAAATAAAGCCGGGGTTGGAGTAT
1 CGGGGTTGGAGTATCCCCGATTATGAGAAATTAATATTTTAGAAATAAAACCGGGGTTGGAGTAT
623490 CCC
66 CCC
623493 TGATTGCAGA
Statistics
Matches: 452, Mismatches: 79, Indels: 19
0.82 0.14 0.03
Matches are distributed among these distances:
77 3 0.01
78 74 0.16
79 371 0.82
80 1 0.00
81 3 0.01
ACGTcount: A:0.33, C:0.13, G:0.25, T:0.28
Consensus pattern (80 bp):
CGGGGTTGGAGTATCCCCGATTATGAGAAATTAATATTTTAGAAATAAAACCGGGGTTGGAGTAT
CCCCTCGAGAAATAA
Found at i:623101 original size:158 final size:157
Alignment explanation
Indices: 622881--623492 Score: 879
Period size: 158 Copynumber: 3.9 Consensus size: 157
622871 GGCCGGGGTT
* * * ** * * *
622881 GAGTATCCCCGATTGTGAGAAATCAATATTTTGGAAATAAAGCCGGGGTTGGAGTATCCCCTCGA
1 GAGTATTCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAGTATCCCCTCGA
*
622946 AAATAACGGGGTTGGAGTATCCCCGATTGTGAGAAATCAATATTTTAGAAATTAAATCGGGGTTG
66 AAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATCAATATTTTAGAAA-TAAATCGGGGTTG
623011 GAGTATCCCCTTAGAAATAACGGGATTG
130 GAGTATCCCCTTAGAAATAACGGGATTG
*
623039 GAGTATTCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAGTATCCCCTCAA
1 GAGTATTCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAGTATCCCCTCGA
* * * * *
623104 AAATAACGGGGTTGGAGTATCCCCGATTATAAGAAATTAATATTTTGGAAATAAAGCTGAGGTTG
66 AAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATCAATATTTTAGAAATAAATC-GGGGTTG
*
623169 GAGTATCCCCTTAGAAATAACAGGATTG
130 GAGTATCCCCTTAGAAATAACGGGATTG
*
623197 GAGTATTCTCGATTATGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAGTAT--CCTCGA
1 GAGTATTCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAGTATCCCCTCGA
* * * * *
623260 TGAAAAAATGGGGTTGGAGTATCCCCGATTGTGAGAAATCAATATTGTAAAAATAAAATCGGGGT
66 --AAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATCAATATTTTAGAAAT-AAATCGGGGT
* *
623325 TGGAGTATTCCCTTAGAAATAACGGGGTTG
128 TGGAGTATCCCCTTAGAAATAACGGGATTG
* * *
623355 GAGTATTACCGATTATGAAAAATTGATGTTTTAGAAATAAAACC-AGGTTGGAGTATCTCCTCGA
1 GAGTATTCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAGTATCCCCTCGA
* * *
623419 AAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATTAATATTTTGGAAATAAAGCCGGGGTTG
66 AAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATCAATATTTTAGAAATAAA-TCGGGGTTG
623484 GAGTATCCC
130 GAGTATCCC
623493 TGATTGCAGA
Statistics
Matches: 404, Mismatches: 43, Indels: 15
0.87 0.09 0.03
Matches are distributed among these distances:
156 8 0.02
157 77 0.19
158 309 0.76
159 10 0.02
ACGTcount: A:0.34, C:0.13, G:0.25, T:0.28
Consensus pattern (157 bp):
GAGTATTCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAGTATCCCCTCGA
AAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATCAATATTTTAGAAATAAATCGGGGTTGG
AGTATCCCCTTAGAAATAACGGGATTG
Found at i:623556 original size:51 final size:50
Alignment explanation
Indices: 623429--623606 Score: 180
Period size: 51 Copynumber: 3.5 Consensus size: 50
623419 AAATAACGGG
* * * * ** *
623429 GTTGGAGTATCCCCGATTATGAGAAATTAATATTTTGGAAATAAAGCCGGG
1 GTTGGAGTATCCCCGATTATGA-AAATCAGTGTTTTGAAAATAAAATCGGA
*
623480 GTTGGAGTATCCCTGATTGCA-GAAAATCAGTGTTTTGAAAATAAAATCGGA
1 GTTGGAGTATCCCCGATT--ATGAAAATCAGTGTTTTGAAAATAAAATCGGA
** *
623531 GTTGGAGTATCCCCGATTATGGAAAATGGGTGTTTT-AGAAACAAAATCGGA
1 GTTGGAGTATCCCCGATTAT-GAAAATCAGTGTTTTGA-AAATAAAATCGGA
* *
623582 GTTGGAGTGTCCCCGATTAAGAAAA
1 GTTGGAGTATCCCCGATTATGAAAA
623607 ATTGATGTCT
Statistics
Matches: 108, Mismatches: 14, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
49 1 0.01
50 6 0.06
51 98 0.91
52 2 0.02
53 1 0.01
ACGTcount: A:0.34, C:0.12, G:0.26, T:0.28
Consensus pattern (50 bp):
GTTGGAGTATCCCCGATTATGAAAATCAGTGTTTTGAAAATAAAATCGGA
Found at i:626029 original size:21 final size:21
Alignment explanation
Indices: 626003--626044 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
625993 GTATCGATAC
*
626003 AATGTATTGATACATTTCCTT
1 AATGTATCGATACATTTCCTT
626024 AATGTATCGATACATTTCCTT
1 AATGTATCGATACATTTCCTT
626045 GGCAGTAGCT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.29, C:0.17, G:0.10, T:0.45
Consensus pattern (21 bp):
AATGTATCGATACATTTCCTT
Found at i:626093 original size:19 final size:19
Alignment explanation
Indices: 626069--626139 Score: 88
Period size: 19 Copynumber: 3.6 Consensus size: 19
626059 AGCGATACAT
626069 TGTATCGATACAAAACTTA
1 TGTATCGATACAAAACTTA
* ** *
626088 TGTATCAATACATTTACTGAA
1 TGTATCGATACA-AAACT-TA
626109 TGTATCGATACAAAACTTA
1 TGTATCGATACAAAACTTA
626128 TGTATCGATACA
1 TGTATCGATACA
626140 TTTACTGAAT
Statistics
Matches: 42, Mismatches: 8, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
19 24 0.57
20 6 0.14
21 12 0.29
ACGTcount: A:0.39, C:0.15, G:0.11, T:0.34
Consensus pattern (19 bp):
TGTATCGATACAAAACTTA
Found at i:626113 original size:21 final size:21
Alignment explanation
Indices: 626087--626160 Score: 98
Period size: 21 Copynumber: 3.6 Consensus size: 21
626077 TACAAAACTT
*
626087 ATGTATCAATACATTTACTGA
1 ATGTATCGATACATTTACTGA
** *
626108 ATGTATCGATACA-AAACT-T
1 ATGTATCGATACATTTACTGA
626127 ATGTATCGATACATTTACTGA
1 ATGTATCGATACATTTACTGA
626148 ATGTATCGATACA
1 ATGTATCGATACA
626161 ATTCAAAAAT
Statistics
Matches: 44, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
19 13 0.30
20 6 0.14
21 25 0.57
ACGTcount: A:0.38, C:0.15, G:0.12, T:0.35
Consensus pattern (21 bp):
ATGTATCGATACATTTACTGA
Found at i:626120 original size:40 final size:40
Alignment explanation
Indices: 626069--626161 Score: 177
Period size: 40 Copynumber: 2.3 Consensus size: 40
626059 AGCGATACAT
626069 TGTATCGATACAAAACTTATGTATCAATACATTTACTGAA
1 TGTATCGATACAAAACTTATGTATCAATACATTTACTGAA
*
626109 TGTATCGATACAAAACTTATGTATCGATACATTTACTGAA
1 TGTATCGATACAAAACTTATGTATCAATACATTTACTGAA
626149 TGTATCGATACAA
1 TGTATCGATACAA
626162 TTCAAAAATT
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 52 1.00
ACGTcount: A:0.39, C:0.15, G:0.12, T:0.34
Consensus pattern (40 bp):
TGTATCGATACAAAACTTATGTATCAATACATTTACTGAA
Found at i:626956 original size:55 final size:55
Alignment explanation
Indices: 626868--627651 Score: 871
Period size: 55 Copynumber: 14.1 Consensus size: 55
626858 TTTGAAAAGG
* * *** * *
626868 AAAGGCGTCTTGCTCTTTGAGGACTAGAGGGTGCCACCAACTCGTGTGGGTTTTA
1 AAAGGCGTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTA
* *
626923 AAAGGCGTCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGA
1 AAAGGCGTCCTGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTT------A
*
626984 AAAGGCGT-CTGGCTCTTTAAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGA
1 AAAGGCGTCCT-GCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTT-A
* * * * *
627040 AAAGAAAAAACATCCTACTCTTTGAGGACTGGAAAATGCCACTAACTTGTGTGGGGTTTA
1 AAAG-----GCGTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTA
*
627100 AAAGGCGTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTATGTGGGCTTTA
1 AAAGGCGTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTA
* * *
627155 AAAGGCATCCTGCTTTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTG
1 AAAGGCGTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTA
* * * *
627210 AAAGGCATCCTACTCTTTGAGGACT-AAAAGATGCCACCAACTTGTGTGGGCTTTG
1 AAAGGCGTCCTGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTA
* * * * *
627265 AAAGACGTCTTGCTCTTTGAGGACT-GAAAGGTGCCAACAACTCGTGTGGGCTTTGAAAAGA
1 AAAGGCGTCCTGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTT------A
627326 AAAGGCGTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGT-GG-----
1 AAAGGCGTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTA
* *
627375 --A-GCATCCTGCTCTTTGAGGACTGGAAAATGCCACTAACTTGTGTGGGCTTTA
1 AAAGGCGTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTA
* *
627427 AAAGGCGTCCTGCTCTTTGAAGACTGGAAAATGCCACCAACTTGTGTGAGCTTTA
1 AAAGGCGTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTA
* *
627482 AAAGGCATCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTG
1 AAAGGCGTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTA
* * * *
627537 GAAGGCATCATGCTCTTTGAGGACT--AAAAGGTGCCACCAACTTGTGTGGGCTTTG
1 AAAGGCGTCCTGCTCTTTGAGGACTGGAAAA--TGCCACCAACTTGTGTGGGCTTTA
* *
627592 AAAGGCGTCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTG
1 AAAGGCGTCCTGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTA
627647 AAAGG
1 AAAGG
627652 AAAAGGCATC
Statistics
Matches: 637, Mismatches: 56, Indels: 72
0.83 0.07 0.09
Matches are distributed among these distances:
46 41 0.06
47 3 0.00
53 4 0.01
54 6 0.01
55 433 0.68
56 9 0.01
60 9 0.01
61 122 0.19
62 10 0.02
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (55 bp):
AAAGGCGTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTA
Found at i:627657 original size:327 final size:327
Alignment explanation
Indices: 627050--627683 Score: 1106
Period size: 327 Copynumber: 1.9 Consensus size: 327
627040 AAAGAAAAAA
*
627050 CATCCTACTCTTTGAGGACTGGAAAATGCCACTAACTTGTGTGGGGTTTAAAAGGCGTCCTGCTC
1 CATCCTACTCTTTGAGGACTGGAAAATGCCACTAACTTGTGTGGGCTTTAAAAGGCGTCCTGCTC
* * *
627115 TTTGAGGACTGGAAAATGCCACCAACTTATGTGGGCTTTAAAAGGCATCCTGCTTTTTGAGGACT
66 TTTGAAGACTGGAAAATGCCACCAACTTATGTGAGCTTTAAAAGGCATCCTGCTCTTTGAGGACT
*
627180 GGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCATCCTACTCTTTGAGGACTAAAAGATGCC
131 GGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCATCATACTCTTTGAGGACTAAAAGATGCC
*
627245 ACCAACTTGTGTGGGCTTTGAAAGACGTCTTGCTCTTTGAGGACTGAAAGGTGCCAACAACTCGT
196 ACCAACTTGTGTGGGCTTTGAAAGACGTCCTGCTCTTTGAGGACTGAAAGGTGCCAACAACTCGT
* * *
627310 GTGGGCTTTGAAAAGAAAAGGCGTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGG
261 GTGGGCTTTGAAAAGAAAAGGCATCATGCTCTTTGAGGACTAGAAAATGCCACCAACTTGTGTGG
627375 AG
326 AG
*
627377 CATCCTGCTCTTTGAGGACTGGAAAATGCCACTAACTTGTGTGGGCTTTAAAAGGCGTCCTGCTC
1 CATCCTACTCTTTGAGGACTGGAAAATGCCACTAACTTGTGTGGGCTTTAAAAGGCGTCCTGCTC
*
627442 TTTGAAGACTGGAAAATGCCACCAACTTGTGTGAGCTTTAAAAGGCATCCTGCTCTTTGAGGACT
66 TTTGAAGACTGGAAAATGCCACCAACTTATGTGAGCTTTAAAAGGCATCCTGCTCTTTGAGGACT
* * *
627507 GGAAAATGCCACCAACTTGTGTGGGCTTTGGAAGGCATCATGCTCTTTGAGGACTAAAAGGTGCC
131 GGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCATCATACTCTTTGAGGACTAAAAGATGCC
* * *
627572 ACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGT
196 ACCAACTTGTGTGGGCTTTGAAAGACGTCCTGCTCTTTGAGGACTGAAAGGTGCCAACAACTCGT
*
627637 GTGGGCTTTGAAAGGAAAAGGCATCATGCTCTTTGAGGACTAGAAAA
261 GTGGGCTTTGAAAAGAAAAGGCATCATGCTCTTTGAGGACTAGAAAA
627684 GTGGAAGGAG
Statistics
Matches: 289, Mismatches: 18, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
327 289 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.27
Consensus pattern (327 bp):
CATCCTACTCTTTGAGGACTGGAAAATGCCACTAACTTGTGTGGGCTTTAAAAGGCGTCCTGCTC
TTTGAAGACTGGAAAATGCCACCAACTTATGTGAGCTTTAAAAGGCATCCTGCTCTTTGAGGACT
GGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCATCATACTCTTTGAGGACTAAAAGATGCC
ACCAACTTGTGTGGGCTTTGAAAGACGTCCTGCTCTTTGAGGACTGAAAGGTGCCAACAACTCGT
GTGGGCTTTGAAAAGAAAAGGCATCATGCTCTTTGAGGACTAGAAAATGCCACCAACTTGTGTGG
AG
Found at i:628689 original size:18 final size:17
Alignment explanation
Indices: 628656--628688 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
628646 CTTTTCTCTC
628656 TTTTTTTCTTTGTTTTG
1 TTTTTTTCTTTGTTTTG
628673 TTTTTTTGCTTT-TTTT
1 TTTTTTT-CTTTGTTTT
628689 TTTGTAAAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.00, C:0.06, G:0.09, T:0.85
Consensus pattern (17 bp):
TTTTTTTCTTTGTTTTG
Found at i:640323 original size:50 final size:51
Alignment explanation
Indices: 640248--640364 Score: 148
Period size: 50 Copynumber: 2.3 Consensus size: 51
640238 GAAAATAATG
* * * *
640248 GGGTTGGAGTATCCTCGATTGTGAGAAATCAATATTTTAGAAATAAGGCC-
1 GGGTTGGAGTATCCCCGACTATGAGAAATCAATATTTTAGAAATAAAGCCT
* * *
640298 GAGGTT-GAGTATCCCCGACTATGAGAAATTAGTATTTTGGAAATAAAGCCT
1 G-GGTTGGAGTATCCCCGACTATGAGAAATCAATATTTTAGAAATAAAGCCT
640349 GGGTTGGAGTATCCCC
1 GGGTTGGAGTATCCCC
640365 TCGGAAATAA
Statistics
Matches: 57, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
50 42 0.74
51 15 0.26
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.29
Consensus pattern (51 bp):
GGGTTGGAGTATCCCCGACTATGAGAAATCAATATTTTAGAAATAAAGCCT
Found at i:640423 original size:28 final size:28
Alignment explanation
Indices: 640349--640423 Score: 105
Period size: 28 Copynumber: 2.7 Consensus size: 28
640339 AATAAAGCCT
*** *
640349 GGGTTGGAGTATCCCCTCGGAAATAACG
1 GGGTTGGAGTATCCCCGATGAAAAAACG
640377 GGGTTGGAGTATCCCCGATGAAAAAACG
1 GGGTTGGAGTATCCCCGATGAAAAAACG
*
640405 GGGTTTGAGTATCCCCGAT
1 GGGTTGGAGTATCCCCGAT
640424 TGTGAGAAAT
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 42 1.00
ACGTcount: A:0.25, C:0.20, G:0.32, T:0.23
Consensus pattern (28 bp):
GGGTTGGAGTATCCCCGATGAAAAAACG
Found at i:640430 original size:107 final size:107
Alignment explanation
Indices: 640302--640609 Score: 499
Period size: 107 Copynumber: 2.9 Consensus size: 107
640292 AAGGCCGAGG
* * * * * ** *
640302 TTGAGTATCCCCGACTATGAGAAATTAGTATTTTGGAAATAAAGCCTGGGTTGGAGTATCCCCTC
1 TTGAGTATCCCCGATTGTGAGAAATCAATATTTTAGAAATAAAATCAGGGTTGGAGTATCCCCTC
640367 GGAAATAACGGGGTTGGAGTATCCCCGATGAAAAAACGGGGT
66 GGAAATAACGGGGTTGGAGTATCCCCGATGAAAAAACGGGGT
*
640409 TTGAGTATCCCCGATTGTGAGAAATCAATATTTTAGAAATAAAATCGGGGTTGGAGTATCCCCTC
1 TTGAGTATCCCCGATTGTGAGAAATCAATATTTTAGAAATAAAATCAGGGTTGGAGTATCCCCTC
640474 GGAAATAACGGGGTTGGAGTATCCCCGATGAAAAAACGGGGT
66 GGAAATAACGGGGTTGGAGTATCCCCGATGAAAAAACGGGGT
* *
640516 TGGAGTATCCCCGATTGTGAGAAATCAATATTTTAGAAATAAAATCAGGGTTGGAGTATCCCCTT
1 TTGAGTATCCCCGATTGTGAGAAATCAATATTTTAGAAATAAAATCAGGGTTGGAGTATCCCCTC
* *
640581 AGAAATAACGGGGTTGGAGTATTCCCGAT
66 GGAAATAACGGGGTTGGAGTATCCCCGAT
640610 TATGAAAAAT
Statistics
Matches: 188, Mismatches: 13, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
107 188 1.00
ACGTcount: A:0.31, C:0.16, G:0.27, T:0.26
Consensus pattern (107 bp):
TTGAGTATCCCCGATTGTGAGAAATCAATATTTTAGAAATAAAATCAGGGTTGGAGTATCCCCTC
GGAAATAACGGGGTTGGAGTATCCCCGATGAAAAAACGGGGT
Found at i:640466 original size:51 final size:51
Alignment explanation
Indices: 640398--640578 Score: 138
Period size: 51 Copynumber: 3.5 Consensus size: 51
640388 TCCCCGATGA
* *
640398 AAAAACGGGGTTTGAGTATCCCCGATTGTGAGAAATCAATATTTTAGAAAT
1 AAAATCGGGGTTGGAGTATCCCCGATTGTGAGAAATCAATATTTTAGAAAT
* * * * ****
640449 AAAATCGGGGTTGGAGTATCCCC--TCG-GAAATAACGGGGTTGGAGTATCCCCGATGAA-
1 AAAATCGGGGTTGGAGTATCCCCGATTGTGAGA-AA------T-CAATATTTTAGA--AAT
640506 AAAA-CGGGGTTGGAGTATCCCCGATTGTGAGAAATCAATATTTTAGAAAT
1 AAAATCGGGGTTGGAGTATCCCCGATTGTGAGAAATCAATATTTTAGAAAT
*
640556 AAAATCAGGGTTGGAGTATCCCC
1 AAAATCGGGGTTGGAGTATCCCC
640579 TTAGAAATAA
Statistics
Matches: 96, Mismatches: 19, Indels: 30
0.66 0.13 0.21
Matches are distributed among these distances:
48 3 0.03
49 6 0.06
50 4 0.04
51 44 0.46
52 1 0.01
55 1 0.01
56 24 0.25
57 4 0.04
58 6 0.06
59 3 0.03
ACGTcount: A:0.33, C:0.15, G:0.26, T:0.25
Consensus pattern (51 bp):
AAAATCGGGGTTGGAGTATCCCCGATTGTGAGAAATCAATATTTTAGAAAT
Found at i:640530 original size:28 final size:28
Alignment explanation
Indices: 640449--640530 Score: 119
Period size: 28 Copynumber: 2.9 Consensus size: 28
640439 TTTTAGAAAT
* ***
640449 AAAATCGGGGTTGGAGTATCCCCTCGGA
1 AAAAACGGGGTTGGAGTATCCCCGATGA
*
640477 AATAACGGGGTTGGAGTATCCCCGATGA
1 AAAAACGGGGTTGGAGTATCCCCGATGA
640505 AAAAACGGGGTTGGAGTATCCCCGAT
1 AAAAACGGGGTTGGAGTATCCCCGAT
640531 TGTGAGAAAT
Statistics
Matches: 48, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 48 1.00
ACGTcount: A:0.28, C:0.20, G:0.32, T:0.21
Consensus pattern (28 bp):
AAAAACGGGGTTGGAGTATCCCCGATGA
Found at i:640570 original size:79 final size:78
Alignment explanation
Indices: 640484--640734 Score: 326
Period size: 79 Copynumber: 3.2 Consensus size: 78
640474 GGAAATAACG
* *
640484 GGGTTGGAGTATCCCCGAT-GAAAAAACGGGGTTGGAGTATCCCCGATTGTGAGAAATCAATATT
1 GGGTTGGAGTATCCCC-ATAGAAAAAACGGGGTTGGAGTATCCCCGATTATGAGAAATTAATATT
640548 TTAGAAATAAAATCA
65 TTAGAAATAAAA-CA
* * * * * *
640563 GGGTTGGAGTATCCCCTTAGAAATAACGGGGTTGGAGTATTCCCGATTATGAAAAATTGATGTTT
1 GGGTTGGAGTATCCCCATAGAAAAAACGGGGTTGGAGTATCCCCGATTATGAGAAATTAATATTT
*
640628 TAGAAATAAAACC
66 TAGAAATAAAACA
*
640641 GAGGTTGGAGTATCCCC-TCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATTAATAT
1 G-GGTTGGAGTATCCCCATAGAAAA-AACGGGGTTGGAGTATCCCCGATTATGAGAAATTAATAT
* * *
640705 TTTTGAAATAAAGCCG
64 TTTAGAAATAAA-ACA
640721 GGGTTGGAGTATCC
1 GGGTTGGAGTATCC
640735 TCGATTGTGG
Statistics
Matches: 150, Mismatches: 18, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
78 8 0.05
79 140 0.93
80 2 0.01
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.27
Consensus pattern (78 bp):
GGGTTGGAGTATCCCCATAGAAAAAACGGGGTTGGAGTATCCCCGATTATGAGAAATTAATATTT
TAGAAATAAAACA
Found at i:640740 original size:51 final size:51
Alignment explanation
Indices: 640668--640891 Score: 227
Period size: 51 Copynumber: 4.4 Consensus size: 51
640658 TCGAAAATAA
* * *
640668 CGGGGTTGGAGTATCCCCGATTAT-GAGAAATTAATATTTTTGAAATAAAGC
1 CGGGGTTGGAGTATCCCCGATTATGGA-AAATTGATGTTTTTGAAATAAAAC
* * * * *
640719 CGGGGTTGGAGTATCCTCGATTGTGGAAAATT-AGGGTTTTGAAAATAAAAT
1 CGGGGTTGGAGTATCCCCGATTATGGAAAATTGATGTTTTTG-AAATAAAAC
* * * * *
640770 CGGAGTTGGAGTATCCCCGATTATGGAAAATGGGTGTTTTAGAAATAAAAT
1 CGGGGTTGGAGTATCCCCGATTATGGAAAATTGATGTTTTTGAAATAAAAC
* * * * * **
640821 CGGAGTTGGAGTATCCCCGATTAAGAAAAATTGATGTCTTGGAAAGGAAAC
1 CGGGGTTGGAGTATCCCCGATTATGGAAAATTGATGTTTTTGAAATAAAAC
*
640872 CGGGATTGGAGTATCCCCGA
1 CGGGGTTGGAGTATCCCCGA
640892 GATGAAAAAT
Statistics
Matches: 144, Mismatches: 26, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
50 6 0.04
51 131 0.91
52 7 0.05
ACGTcount: A:0.32, C:0.12, G:0.28, T:0.28
Consensus pattern (51 bp):
CGGGGTTGGAGTATCCCCGATTATGGAAAATTGATGTTTTTGAAATAAAAC
Found at i:643297 original size:21 final size:21
Alignment explanation
Indices: 643273--643315 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
643263 TGTATCGATA
643273 TAATGTATCGATACATTTCCT
1 TAATGTATCGATACATTTCCT
643294 TAATGTATCGATACATTTCCT
1 TAATGTATCGATACATTTCCT
643315 T
1 T
643316 GGTCGTAGCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.28, C:0.19, G:0.09, T:0.44
Consensus pattern (21 bp):
TAATGTATCGATACATTTCCT
Found at i:649116 original size:13 final size:13
Alignment explanation
Indices: 649098--649161 Score: 77
Period size: 13 Copynumber: 5.4 Consensus size: 13
649088 CGTTGGGCAT
649098 AATGTATCGATAC
1 AATGTATCGATAC
649111 AATGTATCGATAC
1 AATGTATCGATAC
649124 AATG--TC----C
1 AATGTATCGATAC
*
649131 CATGTATCGATAC
1 AATGTATCGATAC
649144 AATGTATCGATAC
1 AATGTATCGATAC
649157 AATGT
1 AATGT
649162 CCCATGTATC
Statistics
Matches: 43, Mismatches: 2, Indels: 12
0.75 0.04 0.21
Matches are distributed among these distances:
7 4 0.09
9 2 0.05
11 2 0.05
13 35 0.81
ACGTcount: A:0.36, C:0.17, G:0.16, T:0.31
Consensus pattern (13 bp):
AATGTATCGATAC
Found at i:649137 original size:20 final size:20
Alignment explanation
Indices: 649112--649177 Score: 83
Period size: 20 Copynumber: 3.6 Consensus size: 20
649102 TATCGATACA
649112 ATGTATCGATACAATGTCCC
1 ATGTATCGATACAATGTCCC
649132 ATGTATCGATAC-A------
1 ATGTATCGATACAATGTCCC
649145 ATGTATCGATACAATGTCCC
1 ATGTATCGATACAATGTCCC
649165 ATGTATCGATACA
1 ATGTATCGATACA
649178 TTTCACTTAC
Statistics
Matches: 39, Mismatches: 0, Indels: 14
0.74 0.00 0.26
Matches are distributed among these distances:
13 12 0.31
14 1 0.03
19 1 0.03
20 25 0.64
ACGTcount: A:0.33, C:0.21, G:0.15, T:0.30
Consensus pattern (20 bp):
ATGTATCGATACAATGTCCC
Found at i:649141 original size:33 final size:33
Alignment explanation
Indices: 649099--649177 Score: 158
Period size: 33 Copynumber: 2.4 Consensus size: 33
649089 GTTGGGCATA
649099 ATGTATCGATACAATGTATCGATACAATGTCCC
1 ATGTATCGATACAATGTATCGATACAATGTCCC
649132 ATGTATCGATACAATGTATCGATACAATGTCCC
1 ATGTATCGATACAATGTATCGATACAATGTCCC
649165 ATGTATCGATACA
1 ATGTATCGATACA
649178 TTTCACTTAC
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 46 1.00
ACGTcount: A:0.34, C:0.20, G:0.15, T:0.30
Consensus pattern (33 bp):
ATGTATCGATACAATGTATCGATACAATGTCCC
Found at i:649231 original size:20 final size:19
Alignment explanation
Indices: 649206--649252 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 19
649196 CTGCCAATTT
649206 CATGTATCAATAAAATTGAG
1 CATGTATCAATAAAA-TGAG
* *
649226 CATGTATCGATACAATGAG
1 CATGTATCAATAAAATGAG
649245 CATGTATC
1 CATGTATC
649253 GATATAAAGC
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
19 12 0.48
20 13 0.52
ACGTcount: A:0.38, C:0.15, G:0.17, T:0.30
Consensus pattern (19 bp):
CATGTATCAATAAAATGAG
Found at i:649246 original size:19 final size:20
Alignment explanation
Indices: 649206--649256 Score: 77
Period size: 19 Copynumber: 2.6 Consensus size: 20
649196 CTGCCAATTT
*
649206 CATGTATCAATAAAATTGAG
1 CATGTATCGATAAAATTGAG
*
649226 CATGTATCGATACAA-TGAG
1 CATGTATCGATAAAATTGAG
649245 CATGTATCGATA
1 CATGTATCGATA
649257 TAAAGCATAA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
19 16 0.55
20 13 0.45
ACGTcount: A:0.39, C:0.14, G:0.18, T:0.29
Consensus pattern (20 bp):
CATGTATCGATAAAATTGAG
Found at i:651535 original size:21 final size:22
Alignment explanation
Indices: 651493--651536 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
651483 TAGATGAATA
* *
651493 AAAAAGAACCTAAATTTCTAAG
1 AAAAACAACCTAAATCTCTAAG
*
651515 AAAAACAACCTAAA-CTGTAAG
1 AAAAACAACCTAAATCTCTAAG
651536 A
1 A
651537 TTTGAAGGGT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
21 6 0.32
22 13 0.68
ACGTcount: A:0.57, C:0.16, G:0.09, T:0.18
Consensus pattern (22 bp):
AAAAACAACCTAAATCTCTAAG
Found at i:657997 original size:13 final size:13
Alignment explanation
Indices: 657979--658008 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
657969 ACAATTCTTC
657979 ATGTATGGATACA
1 ATGTATGGATACA
657992 ATGTATGGATACA
1 ATGTATGGATACA
658005 ATGT
1 ATGT
658009 CCCATGTATC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.37, C:0.07, G:0.23, T:0.33
Consensus pattern (13 bp):
ATGTATGGATACA
Found at i:658003 original size:33 final size:33
Alignment explanation
Indices: 657958--658024 Score: 91
Period size: 33 Copynumber: 2.0 Consensus size: 33
657948 CATTGGGCAT
* *
657958 AATGTATCGATACAAT-TCTTCATGTATGGATAC
1 AATGTATCGATACAATGTC-CCATGTATCGATAC
*
657991 AATGTATGGATACAATGTCCCATGTATCGATAC
1 AATGTATCGATACAATGTCCCATGTATCGATAC
658024 A
1 A
658025 TTTCACTTAG
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
33 28 0.93
34 2 0.07
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.33
Consensus pattern (33 bp):
AATGTATCGATACAATGTCCCATGTATCGATAC
Found at i:663337 original size:34 final size:35
Alignment explanation
Indices: 663299--663365 Score: 102
Period size: 37 Copynumber: 1.9 Consensus size: 35
663289 CCTTACAACA
663299 CTATC-TTTC-AAGGCTAAGATAGAAACCTCTCTCT
1 CTATCTTTTCAAAGGCTAAGATAG-AACCTCTCTCT
663333 CTATCTTTTTCAAAGGCTAAGATAGAACCTCTC
1 CTATC-TTTTCAAAGGCTAAGATAGAACCTCTC
663366 AATCACTTAG
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
34 5 0.17
36 12 0.40
37 13 0.43
ACGTcount: A:0.30, C:0.25, G:0.12, T:0.33
Consensus pattern (35 bp):
CTATCTTTTCAAAGGCTAAGATAGAACCTCTCTCT
Found at i:663849 original size:13 final size:13
Alignment explanation
Indices: 663831--663873 Score: 68
Period size: 13 Copynumber: 3.3 Consensus size: 13
663821 CGATACTATT
663831 TATAGTGTATCGA
1 TATAGTGTATCGA
663844 TATAGTGTATCGA
1 TATAGTGTATCGA
* *
663857 TACAATGTATCGA
1 TATAGTGTATCGA
663870 TATA
1 TATA
663874 TGAATAGTGA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 27 1.00
ACGTcount: A:0.35, C:0.09, G:0.19, T:0.37
Consensus pattern (13 bp):
TATAGTGTATCGA
Found at i:668812 original size:33 final size:33
Alignment explanation
Indices: 668775--669027 Score: 163
Period size: 33 Copynumber: 7.6 Consensus size: 33
668765 CTTTTTCCAA
* *
668775 AAGTCCACAACTCCATAGCACCCTTTTTTTCTT
1 AAGTCCACAACTCCATGGCACCCTTTTTTTTTT
* * *
668808 AAGTCCATAACTCCGA-GGCACCCATTTTCTTTT
1 AAGTCCACAACTCC-ATGGCACCCTTTTTTTTTT
* ** *
668841 AAGTCCAAAACTCTGTGGTA-CCTTTTTTTTTT
1 AAGTCCACAACTCCATGGCACCCTTTTTTTTTT
* * *
668873 CAAAGTCCACAACTCCGTGGCAACTTTTTTCTTTTT
1 --AAGTCCACAACTCCATGGCACCCTTTTT-TTTTT
*** * *
668909 AAGTCCACAACTTTGTGGCACCCTTTATCTTTT
1 AAGTCCACAACTCCATGGCACCCTTTTTTTTTT
* ** * * **
668942 AAG-CTTACAACTCTGTGGCA-CATTTTTCTTCA
1 AAGTC-CACAACTCCATGGCACCCTTTTTTTTTT
* * *
668974 AAGTCCATAACTCCGTGGCACCTTTTTTCTTTTT
1 AAGTCCACAACTCCATGGCACCCTTTTT-TTTTT
**
669008 AAGTCTGCAACTCCATGGCA
1 AAGTCCACAACTCCATGGCA
669028 TCTTTTAGTC
Statistics
Matches: 172, Mismatches: 38, Indels: 19
0.75 0.17 0.08
Matches are distributed among these distances:
32 34 0.20
33 68 0.40
34 59 0.34
35 6 0.03
36 5 0.03
ACGTcount: A:0.23, C:0.27, G:0.12, T:0.38
Consensus pattern (33 bp):
AAGTCCACAACTCCATGGCACCCTTTTTTTTTT
Found at i:668999 original size:99 final size:101
Alignment explanation
Indices: 668774--669021 Score: 290
Period size: 99 Copynumber: 2.5 Consensus size: 101
668764 TCTTTTTCCA
* * * * *
668774 AAAGTCCACAACTCCATAGCACCCTTTTT-TTCTTAAGTCCATAACTCCGAGGCACCCATTTTCT
1 AAAGTCCACAACTCCGTGGCACCTTTTTTCTTTTTAAGTCCACAACTCCGAGGCACCCATTTTCT
* * *
668838 TTTAAGTCCAAAACTCTGTGGTACCTTTTTTTTTTC
66 TTTAAGTCCAAAACTCTGTGGCACCTATTTTTCTTC
* ** *
668874 AAAGTCCACAACTCCGTGGCAACTTTTTTCTTTTTAAGTCCACAACTTTGTGGCACCC-TTTATC
1 AAAGTCCACAACTCCGTGGCACCTTTTTTCTTTTTAAGTCCACAACTCCGAGGCACCCATTT-TC
* *
668938 TTTTAAG-CTTACAACTCTGTGGCA-C-ATTTTTCTTC
65 TTTTAAGTC-CAAAACTCTGTGGCACCTATTTTTCTTC
* **
668973 AAAGTCCATAACTCCGTGGCACCTTTTTTCTTTTTAAGTCTGCAACTCC
1 AAAGTCCACAACTCCGTGGCACCTTTTTTCTTTTTAAGTCCACAACTCC
669022 ATGGCATCTT
Statistics
Matches: 125, Mismatches: 20, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
99 51 0.41
100 30 0.24
101 44 0.35
ACGTcount: A:0.23, C:0.27, G:0.11, T:0.38
Consensus pattern (101 bp):
AAAGTCCACAACTCCGTGGCACCTTTTTTCTTTTTAAGTCCACAACTCCGAGGCACCCATTTTCT
TTTAAGTCCAAAACTCTGTGGCACCTATTTTTCTTC
Found at i:669020 original size:34 final size:33
Alignment explanation
Indices: 668775--669033 Score: 211
Period size: 34 Copynumber: 7.8 Consensus size: 33
668765 CTTTTTCCAA
* * *
668775 AAGTCCACAACTCCATAGCACCCTTTTTT-TCTT
1 AAGTCCACAACTCCGTGGCA-CCTTTTTTCTTTT
* * **
668808 AAGTCCATAACTCCGAGGCACCCATTTTCTTTT
1 AAGTCCACAACTCCGTGGCACCTTTTTTCTTTT
* * *
668841 AAGTCCAAAACTCTGTGGTACCTTTTTT-TTTT
1 AAGTCCACAACTCCGTGGCACCTTTTTTCTTTT
*
668873 CAAAGTCCACAACTCCGTGGCAACTTTTTTCTTTTT
1 --AAGTCCACAACTCCGTGGCACCTTTTTTC-TTTT
** * *
668909 AAGTCCACAACTTTGTGGCACCCTTTATCTTTT
1 AAGTCCACAACTCCGTGGCACCTTTTTTCTTTT
* * * **
668942 AAG-CTTACAACTCTGTGGCA-CATTTTTCTTCA
1 AAGTC-CACAACTCCGTGGCACCTTTTTTCTTTT
*
668974 AAGTCCATAACTCCGTGGCACCTTTTTTCTTTTT
1 AAGTCCACAACTCCGTGGCACCTTTTTTC-TTTT
** * *
669008 AAGTCTGCAACTCCATGGCATCTTTT
1 AAGTCCACAACTCCGTGGCACCTTTT
669034 AGTCCTCAAA
Statistics
Matches: 178, Mismatches: 39, Indels: 17
0.76 0.17 0.07
Matches are distributed among these distances:
32 34 0.19
33 69 0.39
34 71 0.40
36 4 0.02
ACGTcount: A:0.22, C:0.27, G:0.12, T:0.39
Consensus pattern (33 bp):
AAGTCCACAACTCCGTGGCACCTTTTTTCTTTT
Found at i:669166 original size:66 final size:65
Alignment explanation
Indices: 669030--669155 Score: 168
Period size: 62 Copynumber: 2.0 Consensus size: 65
669020 CCATGGCATC
* * * *
669030 TTTTAGTCCTCAAAGAGCAGGACCCTTTTCATTTTCTTTTTAAAGCCTACACAAGTTGGTGGCAC
1 TTTTAGTCCTCAAAGAGCAAGACCCTTTT-ATTTTCTTTCTAAAGCCCACACAAGTCGGTGGCAC
669095 A
65 A
**
669096 TTTTAGTCCTCAAAGAGCAAGATGC-TTT-TTTTC-TTCTAAAGCCCACACAAGTCGGTGGCA
1 TTTTAGTCCTCAAAGAGCAAGACCCTTTTATTTTCTTTCTAAAGCCCACACAAGTCGGTGGCA
669156 ACCCTTTTTT
Statistics
Matches: 54, Mismatches: 6, Indels: 4
0.84 0.09 0.06
Matches are distributed among these distances:
62 24 0.44
63 5 0.09
65 3 0.06
66 22 0.41
ACGTcount: A:0.26, C:0.23, G:0.17, T:0.33
Consensus pattern (65 bp):
TTTTAGTCCTCAAAGAGCAAGACCCTTTTATTTTCTTTCTAAAGCCCACACAAGTCGGTGGCACA
Found at i:669200 original size:31 final size:31
Alignment explanation
Indices: 669128--669227 Score: 128
Period size: 31 Copynumber: 3.2 Consensus size: 31
669118 TGCTTTTTTT
*
669128 CTTCTAAAGCCCACACAAGTCGGTGGCAACC
1 CTTCTAAAGCACACACAAGTCGGTGGCAACC
*
669159 CTTTTTTAAAGCACACACAAGTCGGTGGCAACC
1 C--TTCTAAAGCACACACAAGTCGGTGGCAACC
* ** *
669192 CTTCTAAAGCTCACACAAGTTAGTGGTAACC
1 CTTCTAAAGCACACACAAGTCGGTGGCAACC
669223 CTTCT
1 CTTCT
669228 TTAAAACCCA
Statistics
Matches: 60, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
31 31 0.52
33 29 0.48
ACGTcount: A:0.29, C:0.30, G:0.17, T:0.24
Consensus pattern (31 bp):
CTTCTAAAGCACACACAAGTCGGTGGCAACC
Found at i:669247 original size:33 final size:33
Alignment explanation
Indices: 669126--669244 Score: 143
Period size: 33 Copynumber: 3.6 Consensus size: 33
669116 GATGCTTTTT
*
669126 TTCTTCTAAAGCCCACACAAGTCGGTGGCAACCC
1 TTCTT-TAAAGCCCACACAAGTCAGTGGCAACCC
* * *
669160 TTTTTTAAAGCACACACAAGTCGGTGGCAACCC
1 TTCTTTAAAGCCCACACAAGTCAGTGGCAACCC
* * *
669193 TTC--TAAAGCTCACACAAGTTAGTGGTAACCC
1 TTCTTTAAAGCCCACACAAGTCAGTGGCAACCC
*
669224 TTCTTTAAAACCCACACAAGT
1 TTCTTTAAAGCCCACACAAGT
669245 TAGGGCACCT
Statistics
Matches: 74, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
31 27 0.36
33 43 0.58
34 4 0.05
ACGTcount: A:0.31, C:0.29, G:0.15, T:0.24
Consensus pattern (33 bp):
TTCTTTAAAGCCCACACAAGTCAGTGGCAACCC
Found at i:669314 original size:42 final size:42
Alignment explanation
Indices: 669259--669522 Score: 126
Period size: 43 Copynumber: 6.4 Consensus size: 42
669249 GCACCTTTTA
* *
669259 GTCCTCAAAGAGCATGACGC-ATTT-ATTTTCCCTTTTTCCTTT
1 GTCCTCAAAGAGCAGGAC-CAATTTCATTCT-CCTTTTTCCTTT
*
669301 GTCCTCAATGAGCAGGACCAATTTCATTCTCCTTTTTCCTTT
1 GTCCTCAAAGAGCAGGACCAATTTCATTCTCCTTTTTCCTTT
** * * *
669343 GTCCTTGAAGAACAGGA-C---GT-A--CT-CATTTTCCTTT
1 GTCCTCAAAGAGCAGGACCAATTTCATTCTCCTTTTTCCTTT
* ** * * *
669377 GTCCTCAAAAAGCTTGACGC-ACTTCATTTTCTTTTTTTCCTTT
1 GTCCTCAAAGAGCAGGAC-CAATTTCATTCTC-CTTTTTCCTTT
* * * * *
669420 ATCCTTAAAGAGTAGGATGCACTTT-ATT-TCCTATTTTTCCTTT
1 GTCCTCAAAGAGCAGGA-CCAATTTCATTCTCC--TTTTTCCTTT
* *
669463 GTCCTCAAAGAGTAGGA-CACACTTCATT-TCCTTTTTTCCCTTT
1 GTCCTCAAAGAGCAGGACCA-ATTTCATTCTCC-TTTTT-CCTTT
* *
669506 GTCCTTAAAAAGCAGGA
1 GTCCTCAAAGAGCAGGA
669523 TGCACTTTTT
Statistics
Matches: 167, Mismatches: 37, Indels: 35
0.70 0.15 0.15
Matches are distributed among these distances:
34 21 0.13
35 2 0.01
36 1 0.01
37 1 0.01
38 2 0.01
39 1 0.01
41 5 0.03
42 54 0.32
43 78 0.47
44 2 0.01
ACGTcount: A:0.22, C:0.25, G:0.13, T:0.41
Consensus pattern (42 bp):
GTCCTCAAAGAGCAGGACCAATTTCATTCTCCTTTTTCCTTT
Found at i:669415 original size:43 final size:43
Alignment explanation
Indices: 669368--669529 Score: 182
Period size: 43 Copynumber: 3.8 Consensus size: 43
669358 GACGTACTCA
* *
669368 TTTTCCTTTGTCCTCAAAAAGCT-TGACGCACTTCATTTTCTTT
1 TTTTCCTTTGTCCTCAAAAAG-TAGGACGCACTTCATTTCCTTT
* * * * * *
669411 TTTTCCTTTATCCTTAAAGAGTAGGATGCACTTTATTTCCTAT
1 TTTTCCTTTGTCCTCAAAAAGTAGGACGCACTTCATTTCCTTT
* *
669454 TTTTCCTTTGTCCTCAAAGAGTAGGACACACTTCATTTCCTTT
1 TTTTCCTTTGTCCTCAAAAAGTAGGACGCACTTCATTTCCTTT
* * * *
669497 TTTCCCTTTGTCCTTAAAAAGCAGGATGCACTT
1 TTTTCCTTTGTCCTCAAAAAGTAGGACGCACTT
669530 TTTTTCCCCT
Statistics
Matches: 98, Mismatches: 20, Indels: 2
0.82 0.17 0.02
Matches are distributed among these distances:
42 1 0.01
43 97 0.99
ACGTcount: A:0.22, C:0.23, G:0.12, T:0.43
Consensus pattern (43 bp):
TTTTCCTTTGTCCTCAAAAAGTAGGACGCACTTCATTTCCTTT
Found at i:669486 original size:86 final size:86
Alignment explanation
Indices: 669368--669536 Score: 241
Period size: 86 Copynumber: 2.0 Consensus size: 86
669358 GACGTACTCA
* * * * * *
669368 TTTTCCTTTGTCCTCAAAAAGCTTGACGCACTTCATTTTCTTTTTTTCCTTTATCCTTAAAGAGT
1 TTTTCCTTTGTCCTCAAAAAGCTGGACACACTTCATTTCCTTTTTTCCCTTTATCCTTAAAAAGC
669433 AGGATGCACTTTATTTCCTAT
66 AGGATGCACTTTATTTCCTAT
* *
669454 TTTTCCTTTGTCCTCAAAGAG-TAGGACACACTTCATTTCCTTTTTTCCCTTTGTCCTTAAAAAG
1 TTTTCCTTTGTCCTCAAAAAGCT-GGACACACTTCATTTCCTTTTTTCCCTTTATCCTTAAAAAG
*
669518 CAGGATGCACTTTTTTTCC
65 CAGGATGCACTTTATTTCC
669537 CCTTATCCAC
Statistics
Matches: 73, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
85 1 0.01
86 72 0.99
ACGTcount: A:0.21, C:0.24, G:0.11, T:0.44
Consensus pattern (86 bp):
TTTTCCTTTGTCCTCAAAAAGCTGGACACACTTCATTTCCTTTTTTCCCTTTATCCTTAAAAAGC
AGGATGCACTTTATTTCCTAT
Found at i:669493 original size:120 final size:118
Alignment explanation
Indices: 669259--669496 Score: 257
Period size: 120 Copynumber: 2.0 Consensus size: 118
669249 GCACCTTTTA
* * * *
669259 GTCCTCAAAGAGCATGACGCATTTATTTTCCCTTTTTCCTTTGTCCTCAATGAGCAGGACCAATT
1 GTCCTCAAAAAGCATGACGCATTCATTTTCCCTTTTTCCTTTATCCTCAAAGAGCAGGACCAATT
** **
669324 TCATTCTCCTTTTTCCTTTGTCCTTGAAGAACAGGACGTACTCATTTTCCTTT
66 TCATTCTCCTTTTTCCTTTGTCCTCAAAGAACAGGACACACTCATTTTCCTTT
* ** * * * *
669377 GTCCTCAAAAAGCTTGACGCACTTCATTTTCTTTTTTTCCTTTATCCTTAAAGAGTAGGATGCAC
1 GTCCTCAAAAAGCATGACGCA-TTCATTTTCCCTTTTTCCTTTATCCTCAAAGAGCAGGA-CCAA
**
669442 TTT-ATT-TCCTATTTTTCCTTTGTCCTCAAAGAGTAGGACACACTTCA-TTTCCTTT
64 TTTCATTCTCC--TTTTTCCTTTGTCCTCAAAGAACAGGACACAC-TCATTTTCCTTT
669497 TTTCCCTTTG
Statistics
Matches: 98, Mismatches: 17, Indels: 8
0.80 0.14 0.07
Matches are distributed among these distances:
118 22 0.22
119 34 0.35
120 39 0.40
121 3 0.03
ACGTcount: A:0.21, C:0.25, G:0.13, T:0.41
Consensus pattern (118 bp):
GTCCTCAAAAAGCATGACGCATTCATTTTCCCTTTTTCCTTTATCCTCAAAGAGCAGGACCAATT
TCATTCTCCTTTTTCCTTTGTCCTCAAAGAACAGGACACACTCATTTTCCTTT
Found at i:670375 original size:20 final size:20
Alignment explanation
Indices: 670329--670381 Score: 61
Period size: 20 Copynumber: 2.6 Consensus size: 20
670319 TCTACAATTT
* *
670329 GTATCGATACAATTAGTGAAT
1 GTATCGATAC-ATAAGTGAAC
* *
670350 GCATCGATACATAAGTGAGC
1 GTATCGATACATAAGTGAAC
670370 GTATCGATACAT
1 GTATCGATACAT
670382 GTCTCAAATG
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
20 18 0.67
21 9 0.33
ACGTcount: A:0.36, C:0.15, G:0.21, T:0.28
Consensus pattern (20 bp):
GTATCGATACATAAGTGAAC
Found at i:672911 original size:15 final size:15
Alignment explanation
Indices: 672891--672921 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
672881 ATTTCGACTC
*
672891 TTTCTTCAAAAGAAT
1 TTTCTTCAAAAAAAT
672906 TTTCTTCAAAAAAAT
1 TTTCTTCAAAAAAAT
672921 T
1 T
672922 AATATATGTC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.42, C:0.13, G:0.03, T:0.42
Consensus pattern (15 bp):
TTTCTTCAAAAAAAT
Found at i:677849 original size:20 final size:20
Alignment explanation
Indices: 677824--677878 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 20
677814 ATCTAGGTAG
677824 AATGTATCGATACATTGAAT-
1 AATGTATCGATACATT-AATC
*
677844 AATGTATCGATACATTCATC
1 AATGTATCGATACATTAATC
*
677864 CATGTATCGATACAT
1 AATGTATCGATACAT
677879 CTGGGTAAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
19 2 0.06
20 30 0.94
ACGTcount: A:0.36, C:0.16, G:0.13, T:0.35
Consensus pattern (20 bp):
AATGTATCGATACATTAATC
Found at i:678322 original size:18 final size:19
Alignment explanation
Indices: 678299--678342 Score: 63
Period size: 18 Copynumber: 2.4 Consensus size: 19
678289 TGCACCCCCC
*
678299 TTTTTCTTTTTTTTTCT-T
1 TTTTTCTTTTTCTTTCTAT
*
678317 TTTTTCTTTTTCTTTGTAT
1 TTTTTCTTTTTCTTTCTAT
678336 TTTTTCT
1 TTTTTCT
678343 AATAAGTCTA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 15 0.65
19 8 0.35
ACGTcount: A:0.02, C:0.11, G:0.02, T:0.84
Consensus pattern (19 bp):
TTTTTCTTTTTCTTTCTAT
Found at i:680558 original size:13 final size:13
Alignment explanation
Indices: 680540--680564 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
680530 CAATTTTTTG
680540 TGTATCGATACAT
1 TGTATCGATACAT
680553 TGTATCGATACA
1 TGTATCGATACA
680565 AACTTTGGTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:680562 original size:33 final size:33
Alignment explanation
Indices: 680520--680584 Score: 103
Period size: 33 Copynumber: 2.0 Consensus size: 33
680510 TACAAGCCAA
** *
680520 TGTATCGATACAATTTTTTGTGTATCGATACAT
1 TGTATCGATACAAACTTTGGTGTATCGATACAT
680553 TGTATCGATACAAACTTTGGTGTATCGATACA
1 TGTATCGATACAAACTTTGGTGTATCGATACA
680585 ATTTTGGCTA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.29, C:0.14, G:0.17, T:0.40
Consensus pattern (33 bp):
TGTATCGATACAAACTTTGGTGTATCGATACAT
Found at i:680680 original size:20 final size:20
Alignment explanation
Indices: 680637--680691 Score: 67
Period size: 20 Copynumber: 2.8 Consensus size: 20
680627 CATATTTTTG
*
680637 ATGTATCGATACATTGCAAC
1 ATGTATCGATACTTTGCAAC
*
680657 ATGTATCGATACTTTG-AATT
1 ATGTATCGATACTTTGCAA-C
*
680677 ATGTATTGATACTTT
1 ATGTATCGATACTTT
680692 TAAGGGTTTT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
19 2 0.06
20 29 0.94
ACGTcount: A:0.31, C:0.13, G:0.15, T:0.42
Consensus pattern (20 bp):
ATGTATCGATACTTTGCAAC
Found at i:682741 original size:25 final size:22
Alignment explanation
Indices: 682731--682781 Score: 57
Period size: 24 Copynumber: 2.1 Consensus size: 22
682721 AAGCACAAAG
*
682731 AAAATGAAAAACACAGAAGACAAA
1 AAAAAGAAAAACA-A-AAGACAAA
682755 AAAAAGAAAAAACAAAGAGACAAA
1 AAAAAG-AAAAACAAA-AGACAAA
682779 AAA
1 AAA
682782 TGTGCAAAGG
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
23 1 0.04
24 16 0.67
25 7 0.29
ACGTcount: A:0.76, C:0.10, G:0.12, T:0.02
Consensus pattern (22 bp):
AAAAAGAAAAACAAAAGACAAA
Found at i:684129 original size:34 final size:32
Alignment explanation
Indices: 684067--684325 Score: 204
Period size: 34 Copynumber: 7.8 Consensus size: 32
684057 CTTTTTCCAA
* *
684067 AAGTTCACAACTCCATGGCACCCTTTTTCTTTTT
1 AAGTCCACAACTCCGTGGCA-CC-TTTTCTTTTT
* *
684101 AAGTCCATAACTCCGAGGCATCACTTTTC-TTTT
1 AAGTCCACAACTCCGTGGCA-C-CTTTTCTTTTT
* * *
684134 AAATCCAAAACTCCGTGACACCTTTT-TTTTT
1 AAGTCCACAACTCCGTGGCACCTTTTCTTTTT
* * *
684165 CAAAGTCCACAACTCAGTGGCATTCTTTTTCCTTTT
1 --AAGTCCACAACTCCGTGGCA--CCTTTTCTTTTT
***
684201 AAGTCCACAACTTTATGGCACCCATTTTC-TTTT
1 AAGTCCACAACTCCGTGGCA-CC-TTTTCTTTTT
**
684234 AAG-CTCACAACTCCGTGGCACCTTTT-TCTTCA
1 AAGTC-CACAACTCCGTGGCACCTTTTCT-TTTT
*
684266 AAGTCCACAACTCCGTGGCGCCATTTTTCTTTTT
1 AAGTCCACAACTCCGTGGCACC--TTTTCTTTTT
*
684300 AAGTCCACAACTCCATGGCACCTTTT
1 AAGTCCACAACTCCGTGGCACCTTTT
684326 AGTCCTCAAA
Statistics
Matches: 180, Mismatches: 30, Indels: 32
0.74 0.12 0.13
Matches are distributed among these distances:
31 13 0.07
32 29 0.16
33 57 0.32
34 70 0.39
35 7 0.04
36 4 0.02
ACGTcount: A:0.23, C:0.29, G:0.11, T:0.37
Consensus pattern (32 bp):
AAGTCCACAACTCCGTGGCACCTTTTCTTTTT
Found at i:684302 original size:99 final size:100
Alignment explanation
Indices: 684066--684321 Score: 306
Period size: 100 Copynumber: 2.6 Consensus size: 100
684056 TCTTTTTCCA
* * * *
684066 AAAGTTCACAACTCCATGGCACCCTTTTTCTTTTTAAGTCCATAACTCCGA-GGCA-TCACTTTT
1 AAAGTCCACAACTCCGTGGCA-CCTTTTTCTTTTTAAGTCCACAACTCC-ATGGCACCCACTTTT
*
684129 CTTTTAAATCCAAAACTCCGTGACACCTTTTTTTTTC
64 CTTTTAAATCCAAAACTCCGTGACACCTTTTTTCTTC
* * * **
684166 AAAGTCCACAACTCAGTGGCATTCTTTTTCCTTTTAAGTCCACAACTTTATGGCACCCA-TTTTC
1 AAAGTCCACAACTCCGTGGCA-CCTTTTTCTTTTTAAGTCCACAACTCCATGGCACCCACTTTTC
* * *
684230 TTTT-AAGCTCACAACTCCGTGGCACC-TTTTTCTTC
65 TTTTAAATC-CAAAACTCCGTGACACCTTTTTTCTTC
*
684265 AAAGTCCACAACTCCGTGGCGCCATTTTTCTTTTTAAGTCCACAACTCCATGGCACC
1 AAAGTCCACAACTCCGTGGCACC-TTTTTCTTTTTAAGTCCACAACTCCATGGCACC
684322 TTTTAGTCCT
Statistics
Matches: 132, Mismatches: 20, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
98 1 0.01
99 61 0.46
100 68 0.52
101 2 0.02
ACGTcount: A:0.24, C:0.30, G:0.11, T:0.36
Consensus pattern (100 bp):
AAAGTCCACAACTCCGTGGCACCTTTTTCTTTTTAAGTCCACAACTCCATGGCACCCACTTTTCT
TTTAAATCCAAAACTCCGTGACACCTTTTTTCTTC
Found at i:684416 original size:66 final size:63
Alignment explanation
Indices: 684319--684446 Score: 166
Period size: 66 Copynumber: 2.0 Consensus size: 63
684309 ACTCCATGGC
* * * * *
684319 ACCTTTTAGTCCTCAAAGAGCAGGACCCTTTTCGTTTTCTTTTTAAAGCCCACACAAGTTGGTGG
1 ACCTTTTAGTCCTCAAAGAGCACGACACTTTT--ATTTC-CTTTAAAGCCCACACAAGTCGGTGG
684384 G
63 G
* *
684385 ACCTTTTAGTCCTCAAAGAGCACGATACTTTTATTTCCTTTAAAGCCCACATAAGTCGGTGG
1 ACCTTTTAGTCCTCAAAGAGCACGACACTTTTATTTCCTTTAAAGCCCACACAAGTCGGTGG
684447 CAACCCTTTT
Statistics
Matches: 55, Mismatches: 7, Indels: 3
0.85 0.11 0.05
Matches are distributed among these distances:
63 22 0.40
64 4 0.07
66 29 0.53
ACGTcount: A:0.25, C:0.24, G:0.18, T:0.33
Consensus pattern (63 bp):
ACCTTTTAGTCCTCAAAGAGCACGACACTTTTATTTCCTTTAAAGCCCACACAAGTCGGTGGG
Found at i:684462 original size:33 final size:32
Alignment explanation
Indices: 684425--684545 Score: 172
Period size: 33 Copynumber: 3.8 Consensus size: 32
684415 TTATTTCCTT
*
684425 TAAAGCCCACATAAGTCGGTGGCAACCCTTTTC
1 TAAAGCCCACACAAGTCGGTGGCAACCC-TTTC
*
684458 TAAAGCCCACACAAGTTGGTGGCAACCC-TTC
1 TAAAGCCCACACAAGTCGGTGGCAACCCTTTC
* * *
684489 TAAAGCCCACACAAGTCAGTGGTAACCCTTCC
1 TAAAGCCCACACAAGTCGGTGGCAACCCTTTC
684521 TTAAAGCCCACACAAGTCGGTGGCA
1 -TAAAGCCCACACAAGTCGGTGGCA
684546 CCTTTTAGCC
Statistics
Matches: 78, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
31 28 0.36
32 2 0.03
33 48 0.62
ACGTcount: A:0.30, C:0.31, G:0.19, T:0.20
Consensus pattern (32 bp):
TAAAGCCCACACAAGTCGGTGGCAACCCTTTC
Found at i:684498 original size:64 final size:63
Alignment explanation
Indices: 684421--684545 Score: 180
Period size: 64 Copynumber: 2.0 Consensus size: 63
684411 ACTTTTATTT
* * * *
684421 CCTTTAAAGCCCACATAAGTCGGTGGCAACCCTT-TTCTAAAGCCCACACAAGTTGGTGGCAAC
1 CCTTTAAAGCCCACACAAGTCAGTGGCAACCCTTCCT-TAAAGCCCACACAAGTCGGTGGCAAC
*
684484 CCTTCTAAAGCCCACACAAGTCAGTGGTAACCCTTCCTTAAAGCCCACACAAGTCGGTGGCA
1 CCTT-TAAAGCCCACACAAGTCAGTGGCAACCCTTCCTTAAAGCCCACACAAGTCGGTGGCA
684546 CCTTTTAGCC
Statistics
Matches: 55, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
63 4 0.07
64 50 0.91
65 1 0.02
ACGTcount: A:0.29, C:0.32, G:0.18, T:0.21
Consensus pattern (63 bp):
CCTTTAAAGCCCACACAAGTCAGTGGCAACCCTTCCTTAAAGCCCACACAAGTCGGTGGCAAC
Found at i:684667 original size:34 final size:34
Alignment explanation
Indices: 684625--684690 Score: 105
Period size: 34 Copynumber: 1.9 Consensus size: 34
684615 TCATTCTCTT
*
684625 TTTTCCTTTGTCCTTGAAGAACAAGACGTACTCC
1 TTTTCCTTTGTCCTTAAAGAACAAGACGTACTCC
* *
684659 TTTTCCTTTGTCCTTAAAGAGCAGGACGTACT
1 TTTTCCTTTGTCCTTAAAGAACAAGACGTACT
684691 TCATTTTCTT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
34 29 1.00
ACGTcount: A:0.23, C:0.24, G:0.17, T:0.36
Consensus pattern (34 bp):
TTTTCCTTTGTCCTTAAAGAACAAGACGTACTCC
Found at i:684707 original size:44 final size:43
Alignment explanation
Indices: 684659--684821 Score: 166
Period size: 43 Copynumber: 3.8 Consensus size: 43
684649 GACGTACTCC
* * *
684659 TTTTCCTTTGTCCTTAAAGAGCAGGACGTACTTCATTTTCTTTT
1 TTTTCCTTTGTCCTTAAAGAGTAGGACGCACTTCA-TTTCCTTT
* * * * *
684703 TTTTCCTTTATCTTTAAAGAGTAGGATGCACATT-ATATCCTAT
1 TTTTCCTTTGTCCTTAAAGAGTAGGACGCAC-TTCATTTCCTTT
* * *
684746 TTTTCCTTTGTCCTCAAAGAGTAGGACACACTTCATTTCCGTT
1 TTTTCCTTTGTCCTTAAAGAGTAGGACGCACTTCATTTCCTTT
* * * *
684789 TTTCCCTTTGTACTTAAAAAGTAGGATGCACTT
1 TTTTCCTTTGTCCTTAAAGAGTAGGACGCACTT
684822 TTTTTCCCTT
Statistics
Matches: 95, Mismatches: 22, Indels: 5
0.78 0.18 0.04
Matches are distributed among these distances:
42 2 0.02
43 64 0.67
44 27 0.28
45 2 0.02
ACGTcount: A:0.23, C:0.20, G:0.13, T:0.43
Consensus pattern (43 bp):
TTTTCCTTTGTCCTTAAAGAGTAGGACGCACTTCATTTCCTTT
Found at i:684971 original size:44 final size:44
Alignment explanation
Indices: 684915--685005 Score: 155
Period size: 44 Copynumber: 2.1 Consensus size: 44
684905 CTTCTTTTTC
*
684915 CTTTGTTCTCAAAAAGCAAGACGTACCCATTTTTCTCTGTCCTT
1 CTTTATTCTCAAAAAGCAAGACGTACCCATTTTTCTCTGTCCTT
* *
684959 CTTTATTCTCAAAAAGCAAGACGTACCCCTTTTTCTTTGTCCTT
1 CTTTATTCTCAAAAAGCAAGACGTACCCATTTTTCTCTGTCCTT
685003 CTT
1 CTT
685006 CTTTTAAAAG
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
44 44 1.00
ACGTcount: A:0.22, C:0.27, G:0.10, T:0.41
Consensus pattern (44 bp):
CTTTATTCTCAAAAAGCAAGACGTACCCATTTTTCTCTGTCCTT
Found at i:685688 original size:20 final size:20
Alignment explanation
Indices: 685637--685690 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 20
685627 TTCTACAATT
*
685637 TGTATCGATACAATTAGTGAA
1 TGTATCGATAC-ATAAGTGAA
* *
685658 TGCATCAATACATAAGTGAA
1 TGTATCGATACATAAGTGAA
*
685678 TGTATTGATACAT
1 TGTATCGATACAT
685691 GTCTCAAATG
Statistics
Matches: 27, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
20 18 0.67
21 9 0.33
ACGTcount: A:0.39, C:0.11, G:0.17, T:0.33
Consensus pattern (20 bp):
TGTATCGATACATAAGTGAA
Found at i:688191 original size:15 final size:15
Alignment explanation
Indices: 688171--688201 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
688161 ATTTCGACTC
*
688171 TTTCTTCAAAAGAAT
1 TTTCTTCAAAAAAAT
688186 TTTCTTCAAAAAAAT
1 TTTCTTCAAAAAAAT
688201 T
1 T
688202 AGTATACATC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.42, C:0.13, G:0.03, T:0.42
Consensus pattern (15 bp):
TTTCTTCAAAAAAAT
Found at i:693134 original size:23 final size:21
Alignment explanation
Indices: 693108--693204 Score: 83
Period size: 20 Copynumber: 4.7 Consensus size: 21
693098 TTTTAACTAG
*
693108 ATGTATCGATACATTTGGGTAGA
1 ATGTATCGATACATTT--GAAGA
*
693131 ATGTATCGATACA-TTGAATA
1 ATGTATCGATACATTTGAAGA
* ***
693151 ATGTATCGATACA-TTCATCC
1 ATGTATCGATACATTTGAAGA
* *
693171 ATGTATCGATGCA-TTGAAAA
1 ATGTATCGATACATTTGAAGA
693191 ATGTATCGATACAT
1 ATGTATCGATACAT
693205 CTGGGTAAAA
Statistics
Matches: 61, Mismatches: 12, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
20 46 0.75
22 2 0.03
23 13 0.21
ACGTcount: A:0.35, C:0.13, G:0.18, T:0.34
Consensus pattern (21 bp):
ATGTATCGATACATTTGAAGA
Found at i:693155 original size:20 final size:20
Alignment explanation
Indices: 693130--693204 Score: 98
Period size: 20 Copynumber: 3.8 Consensus size: 20
693120 ATTTGGGTAG
693130 AATGTATCGATACATTGAAT
1 AATGTATCGATACATTGAAT
*
693150 AATGTATCGATACATT-CAT
1 AATGTATCGATACATTGAAT
* * *
693169 CCATGTATCGATGCATTGAAA
1 -AATGTATCGATACATTGAAT
693190 AATGTATCGATACAT
1 AATGTATCGATACAT
693205 CTGGGTAAAA
Statistics
Matches: 46, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
19 2 0.04
20 43 0.93
21 1 0.02
ACGTcount: A:0.37, C:0.15, G:0.15, T:0.33
Consensus pattern (20 bp):
AATGTATCGATACATTGAAT
Found at i:696933 original size:24 final size:24
Alignment explanation
Indices: 696877--696941 Score: 62
Period size: 25 Copynumber: 2.6 Consensus size: 24
696867 AAGTCTAAAG
696877 CAAAAGCACAAAGAAAATG-AAAAACA
1 CAAAAG-ACAAA-AAAA-GAAAAAACA
* *
696903 CAGAAGATAGAAAAAAGAAAAAACA
1 CAAAAGACA-AAAAAAGAAAAAACA
696928 -AAAAGACAAAAAAA
1 CAAAAGACAAAAAAA
696942 TGTGCAGAGG
Statistics
Matches: 33, Mismatches: 4, Indels: 7
0.75 0.09 0.16
Matches are distributed among these distances:
23 6 0.18
24 7 0.21
25 13 0.39
26 7 0.21
ACGTcount: A:0.74, C:0.11, G:0.12, T:0.03
Consensus pattern (24 bp):
CAAAAGACAAAAAAAGAAAAAACA
Found at i:696939 original size:23 final size:24
Alignment explanation
Indices: 696877--696943 Score: 66
Period size: 24 Copynumber: 2.7 Consensus size: 24
696867 AAGTCTAAAG
696877 CAAAAGCACAAAGAAAATGAAAAACA
1 CAAAAG-ACAAA-AAAATGAAAAACA
* *
696903 CAGAAGATAGAAAAAA-GAAAAA-A
1 CAAAAGACA-AAAAAATGAAAAACA
696926 CAAAAAGACAAAAAAATG
1 C-AAAAGACAAAAAAATG
696944 TGCAGAGGCA
Statistics
Matches: 34, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
23 8 0.24
24 13 0.38
25 6 0.18
26 7 0.21
ACGTcount: A:0.72, C:0.10, G:0.13, T:0.04
Consensus pattern (24 bp):
CAAAAGACAAAAAAATGAAAAACA
Found at i:698264 original size:34 final size:34
Alignment explanation
Indices: 698224--698483 Score: 232
Period size: 33 Copynumber: 7.8 Consensus size: 34
698214 CTTTTTCCAA
698224 AAGTCCACAACTCCATGGCACCCTTTTTCTTTTT
1 AAGTCCACAACTCCATGGCACCCTTTTTCTTTTT
* *
698258 AAGTCCATAACTCCGA-GGCACCCCTTTTC-TTTT
1 AAGTCCACAACTCC-ATGGCACCCTTTTTCTTTTT
* * *
698291 AAGTCCAAAACTCCGTGGC-CCCTTTTT-TTTTCA
1 AAGTCCACAACTCCATGGCACCCTTTTTCTTTT-T
* * * *
698324 AAGTCCACAACTCAAAGGCATCCTTTATCTTTTT
1 AAGTCCACAACTCCATGGCACCCTTTTTCTTTTT
** *
698358 AAGTCCACAACTTTATGGCACCCATTTTC-TTTT
1 AAGTCCACAACTCCATGGCACCCTTTTTCTTTTT
* **
698391 AAG-CTCACAACTCCGTGGCACCC-TTTT-TTTCA
1 AAGTC-CACAACTCCATGGCACCCTTTTTCTTTTT
* *
698423 AATTCCACAACTCCGTGGCACCCTTTTTCTTTTTT
1 AAGTCCACAACTCCATGGCACCCTTTTTC-TTTTT
** **
698458 ATTTCCACAACTTTATGGCA-CCTTTT
1 AAGTCCACAACTCCATGGCACCCTTTT
698484 AGTCCTTAAA
Statistics
Matches: 183, Mismatches: 31, Indels: 24
0.77 0.13 0.10
Matches are distributed among these distances:
32 37 0.20
33 62 0.34
34 60 0.33
35 24 0.13
ACGTcount: A:0.22, C:0.30, G:0.10, T:0.37
Consensus pattern (34 bp):
AAGTCCACAACTCCATGGCACCCTTTTTCTTTTT
Found at i:698336 original size:100 final size:99
Alignment explanation
Indices: 698223--698479 Score: 313
Period size: 100 Copynumber: 2.6 Consensus size: 99
698213 TCTTTTTCCA
* *
698223 AAAGTCCACAACTCCATGGCACCCTTTTTCTTTTTAAGTCCATAACTCCGA-GGCACCCCTTTTC
1 AAAGTCCACAACTCCATGGCACCCTTTTTCTTTTTAAGTCCACAACT-CGATGGCACCCATTTTC
698287 TTTTAAG-TCCAAAACTCCGTGGC-CCCTTTTTTTTTC
65 TTTTAAGCT-CAAAACTCCGTGGCACCC--TTTTTTTC
* * * * **
698323 AAAGTCCACAACTCAAAGGCATCCTTTATCTTTTTAAGTCCACAACTTTATGGCACCCATTTTCT
1 AAAGTCCACAACTCCATGGCACCCTTTTTCTTTTTAAGTCCACAACTCGATGGCACCCATTTTCT
*
698388 TTTAAGCTCACAACTCCGTGGCACCCTTTTTTTC
66 TTTAAGCTCAAAACTCCGTGGCACCCTTTTTTTC
* * ** **
698422 AAATTCCACAACTCCGTGGCACCCTTTTTCTTTTTTATTTCCACAACTTTATGGCACC
1 AAAGTCCACAACTCCATGGCACCCTTTTTC-TTTTTAAGTCCACAACTCGATGGCACC
698480 TTTTAGTCCT
Statistics
Matches: 136, Mismatches: 17, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
99 33 0.24
100 99 0.73
101 4 0.03
ACGTcount: A:0.23, C:0.31, G:0.10, T:0.36
Consensus pattern (99 bp):
AAAGTCCACAACTCCATGGCACCCTTTTTCTTTTTAAGTCCACAACTCGATGGCACCCATTTTCT
TTTAAGCTCAAAACTCCGTGGCACCCTTTTTTTC
Found at i:698469 original size:67 final size:66
Alignment explanation
Indices: 698224--698455 Score: 249
Period size: 67 Copynumber: 3.5 Consensus size: 66
698214 CTTTTTCCAA
* *
698224 AAGTCCACAACTCCATGGCACCCTTTTTCTTTTTAAGTCCATAACTCCGAGGCACCCCTTTTCTT
1 AAGTCCACAACTCCATGGCACCCTTTTTCTTTTAAAGTCCACAACTCCGAGGCA-CCCTTTTCTT
698289 TT
65 TT
* * ** *
698291 AAGTCCAAAACTCCGTGGC-CCCTTTTT-TTTTCAAAGTCCACAACTCAAAGGCATCCTTTATCT
1 AAGTCCACAACTCCATGGCACCCTTTTTCTTTT-AAAGTCCACAACTCCGAGGCACCCTTT-TC-
698354 TTTT
63 TTTT
** * *
698358 AAGTCCACAACTTTATGGCACCCATTTTCTTTT-AAG-CTCACAACTCCGTGGCACCCTTTT-TT
1 AAGTCCACAACTCCATGGCACCCTTTTTCTTTTAAAGTC-CACAACTCCGAGGCACCCTTTTCTT
*
698420 TCA
65 T-T
* *
698423 AATTCCACAACTCCGTGGCACCCTTTTTCTTTT
1 AAGTCCACAACTCCATGGCACCCTTTTTCTTTT
698456 TTATTTCCAC
Statistics
Matches: 136, Mismatches: 22, Indels: 16
0.78 0.13 0.09
Matches are distributed among these distances:
64 3 0.02
65 37 0.27
66 29 0.21
67 56 0.41
68 7 0.05
69 4 0.03
ACGTcount: A:0.22, C:0.31, G:0.10, T:0.36
Consensus pattern (66 bp):
AAGTCCACAACTCCATGGCACCCTTTTTCTTTTAAAGTCCACAACTCCGAGGCACCCTTTTCTTT
T
Found at i:698477 original size:35 final size:35
Alignment explanation
Indices: 698227--698483 Score: 189
Period size: 34 Copynumber: 7.7 Consensus size: 35
698217 TTTCCAAAAG
*
698227 TCCACAACTCCATGGCACCCTTTTTCTTTTT-AAG
1 TCCACAACTCCATGGCACCCTTTTTCTTTTTAAAT
* * *
698261 TCCATAACTCCGA-GGCACCCCTTTTC-TTTT-AAG
1 TCCACAACTCC-ATGGCACCCTTTTTCTTTTTAAAT
* * * *
698294 TCCAAAACTCCGTGGC-CCCTTTTT-TTTTCAAAG
1 TCCACAACTCCATGGCACCCTTTTTCTTTTTAAAT
* * * * *
698327 TCCACAACTCAAAGGCATCCTTTATCTTTTT-AAG
1 TCCACAACTCCATGGCACCCTTTTTCTTTTTAAAT
** * **
698361 TCCACAACTTTATGGCACCCATTTTC-TTTTAAGC
1 TCCACAACTCCATGGCACCCTTTTTCTTTTTAAAT
* *
698395 T-CACAACTCCGTGGCACCC--TTT-TTTTCAAAT
1 TCCACAACTCCATGGCACCCTTTTTCTTTTTAAAT
* * *
698426 TCCACAACTCCGTGGCACCCTTTTTCTTTTTTATT
1 TCCACAACTCCATGGCACCCTTTTTCTTTTTAAAT
**
698461 TCCACAACTTTATGGCA-CCTTTT
1 TCCACAACTCCATGGCACCCTTTT
698484 AGTCCTTAAA
Statistics
Matches: 178, Mismatches: 33, Indels: 24
0.76 0.14 0.10
Matches are distributed among these distances:
31 9 0.05
32 28 0.16
33 54 0.30
34 62 0.35
35 25 0.14
ACGTcount: A:0.22, C:0.31, G:0.10, T:0.38
Consensus pattern (35 bp):
TCCACAACTCCATGGCACCCTTTTTCTTTTTAAAT
Found at i:698621 original size:33 final size:33
Alignment explanation
Indices: 698579--698674 Score: 151
Period size: 33 Copynumber: 3.0 Consensus size: 33
698569 GTTTTTTTCC
698579 TCTAAAGCCCACACAAGTCGGTGGCAACCCTTT
1 TCTAAAGCCCACACAAGTCGGTGGCAACCCTTT
698612 TCTAAAGCCCACACAAGTCGGTGGCAACCC--T
1 TCTAAAGCCCACACAAGTCGGTGGCAACCCTTT
* * *
698643 TCTGAAGCGCACACAAGTCGGTGGTAACCCTT
1 TCTAAAGCCCACACAAGTCGGTGGCAACCCTT
698675 CCTTTGTCCT
Statistics
Matches: 58, Mismatches: 3, Indels: 4
0.89 0.05 0.06
Matches are distributed among these distances:
31 28 0.48
33 30 0.52
ACGTcount: A:0.27, C:0.32, G:0.21, T:0.20
Consensus pattern (33 bp):
TCTAAAGCCCACACAAGTCGGTGGCAACCCTTT
Found at i:698659 original size:31 final size:31
Alignment explanation
Indices: 698579--698675 Score: 149
Period size: 31 Copynumber: 3.1 Consensus size: 31
698569 GTTTTTTTCC
698579 TCTAAAGCCCACACAAGTCGGTGGCAACCCTTT
1 TCTAAAGCCCACACAAGTCGGTGGCAACCC--T
698612 TCTAAAGCCCACACAAGTCGGTGGCAACCCT
1 TCTAAAGCCCACACAAGTCGGTGGCAACCCT
* * *
698643 TCTGAAGCGCACACAAGTCGGTGGTAACCCT
1 TCTAAAGCCCACACAAGTCGGTGGCAACCCT
698674 TC
1 TC
698676 CTTTGTCCTC
Statistics
Matches: 61, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
31 31 0.51
33 30 0.49
ACGTcount: A:0.27, C:0.33, G:0.21, T:0.20
Consensus pattern (31 bp):
TCTAAAGCCCACACAAGTCGGTGGCAACCCT
Found at i:698749 original size:34 final size:34
Alignment explanation
Indices: 698711--698778 Score: 109
Period size: 34 Copynumber: 2.0 Consensus size: 34
698701 TTTCATTCTC
*
698711 CCTTTTCCTTTGTCCTTGAAGAACAAGACGTACT
1 CCTTTTCCTTTGTCCTTAAAGAACAAGACGTACT
* *
698745 CCTTTTCCTTTGTCCTTAAAGAGCATGACGTACT
1 CCTTTTCCTTTGTCCTTAAAGAACAAGACGTACT
698779 TCATTTTCTT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.22, C:0.26, G:0.15, T:0.37
Consensus pattern (34 bp):
CCTTTTCCTTTGTCCTTAAAGAACAAGACGTACT
Found at i:698795 original size:43 final size:43
Alignment explanation
Indices: 698747--698908 Score: 180
Period size: 43 Copynumber: 3.8 Consensus size: 43
698737 GACGTACTCC
* * * *
698747 TTTTCCTTTGTCCTTAAAGAGCATGACGTACTTCATTTTCTTT
1 TTTTCCTTTGTCCTTAAAGAGTAAGACGCACTTCATTTCCTTT
* * * * *
698790 TTTTCCTTTATCCTTAAAGAGTAGGATGCACTTTATTTCCTAT
1 TTTTCCTTTGTCCTTAAAGAGTAAGACGCACTTCATTTCCTTT
* * *
698833 TTTTCTTTTGTCCTCAAAGAGTAAGACACACTTCATTTCCTTT
1 TTTTCCTTTGTCCTTAAAGAGTAAGACGCACTTCATTTCCTTT
* * * *
698876 TTTCCCTTTGTCCTTAAAAAGTAGGATGCACTT
1 TTTTCCTTTGTCCTTAAAGAGTAAGACGCACTT
698909 TTTTTCCCTT
Statistics
Matches: 96, Mismatches: 23, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
43 96 1.00
ACGTcount: A:0.22, C:0.21, G:0.12, T:0.45
Consensus pattern (43 bp):
TTTTCCTTTGTCCTTAAAGAGTAAGACGCACTTCATTTCCTTT
Found at i:698892 original size:86 final size:86
Alignment explanation
Indices: 698747--698915 Score: 239
Period size: 86 Copynumber: 2.0 Consensus size: 86
698737 GACGTACTCC
* * ** * * *
698747 TTTTCCTTTGTCCTTAAAGAGCATGACGTACTTCATTTTCTTTTTTTCCTTTATCCTTAAAGAGT
1 TTTTCCTTTGTCCTCAAAGAGCAAGACACACTTCATTTCCTTTTTTCCCTTTATCCTTAAAAAGT
698812 AGGATGCACTTTATTTCCTAT
66 AGGATGCACTTTATTTCCTAT
* * *
698833 TTTTCTTTTGTCCTCAAAGAGTAAGACACACTTCATTTCCTTTTTTCCCTTTGTCCTTAAAAAGT
1 TTTTCCTTTGTCCTCAAAGAGCAAGACACACTTCATTTCCTTTTTTCCCTTTATCCTTAAAAAGT
*
698898 AGGATGCACTTTTTTTCC
66 AGGATGCACTTTATTTCC
698916 CTTTATCCTC
Statistics
Matches: 72, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
86 72 1.00
ACGTcount: A:0.21, C:0.21, G:0.11, T:0.46
Consensus pattern (86 bp):
TTTTCCTTTGTCCTCAAAGAGCAAGACACACTTCATTTCCTTTTTTCCCTTTATCCTTAAAAAGT
AGGATGCACTTTATTTCCTAT
Found at i:699009 original size:42 final size:43
Alignment explanation
Indices: 698909--699012 Score: 120
Period size: 43 Copynumber: 2.4 Consensus size: 43
698899 GGATGCACTT
* * * * **
698909 TTTTTCCCTTTATCCTCAAGGAGCAAGACGCATTCCGTTTTTCC
1 TTTTT-CCTTTGTCCTCAAGGAACAAGACCCATTCCGATTCCCC
* *
698953 TTTTTCTTTTGTCCTCAAGGAACAAGACCCATTTC-ATTCCCC
1 TTTTTCCTTTGTCCTCAAGGAACAAGACCCATTCCGATTCCCC
698995 TTTTTCCTTTGTCCTCAA
1 TTTTTCCTTTGTCCTCAA
699013 AATGCAAGAC
Statistics
Matches: 51, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
42 21 0.41
43 25 0.49
44 5 0.10
ACGTcount: A:0.18, C:0.30, G:0.11, T:0.41
Consensus pattern (43 bp):
TTTTTCCTTTGTCCTCAAGGAACAAGACCCATTCCGATTCCCC
Found at i:699738 original size:20 final size:20
Alignment explanation
Indices: 699682--699758 Score: 93
Period size: 20 Copynumber: 3.9 Consensus size: 20
699672 ATATATTTTG
* *
699682 CATTGTATCGATGCATCGCT
1 CATTGTATCGATACATTGCT
*
699702 CATTATATCGATACATTGCT
1 CATTGTATCGATACATTGCT
*
699722 CATTGTATCGATACATT-TT
1 CATTGTATCGATACATTGCT
*
699741 ACAATGTATCGATACATT
1 -CATTGTATCGATACATT
699759 CAGGCATTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
19 1 0.02
20 49 0.98
ACGTcount: A:0.29, C:0.19, G:0.13, T:0.39
Consensus pattern (20 bp):
CATTGTATCGATACATTGCT
Found at i:702127 original size:51 final size:51
Alignment explanation
Indices: 702047--702215 Score: 160
Period size: 51 Copynumber: 3.3 Consensus size: 51
702037 ATTTTGGATC
* ** * *
702047 TCGGGGATACTCCAA-TCCCGGTTCCATTTCCAAAACGTCAATTTTTCTTAA
1 TCGGGGATACTCCAACT-CCGATTTTATTTCCAAAACATCAATTTTTCATAA
* ** * ** *
702098 TCGGGGATACTCCAACTCCGATTTTATTTCTAAAGTATCGATTTACCGTAA
1 TCGGGGATACTCCAACTCCGATTTTATTTCCAAAACATCAATTTTTCATAA
* * * * *
702149 TCGGGGATACTCCAACTCCAATTTTATTTTCAAAACACCTATTTTTCACAA
1 TCGGGGATACTCCAACTCCGATTTTATTTCCAAAACATCAATTTTTCATAA
*
702200 TTGGGGATACTCCAAC
1 TCGGGGATACTCCAAC
702216 CCTGTTATTT
Statistics
Matches: 94, Mismatches: 23, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
51 93 0.99
52 1 0.01
ACGTcount: A:0.28, C:0.25, G:0.14, T:0.34
Consensus pattern (51 bp):
TCGGGGATACTCCAACTCCGATTTTATTTCCAAAACATCAATTTTTCATAA
Found at i:702318 original size:28 final size:26
Alignment explanation
Indices: 702278--702351 Score: 85
Period size: 28 Copynumber: 2.7 Consensus size: 26
702268 ATTTTTCATA
*
702278 ATCGGGGATACTCCAACCCCGTTATGT
1 ATCGAGGATACTCCAACCCCGTTAT-T
*
702305 CATCGAGGATACTCCAATCCCGTTATT
1 -ATCGAGGATACTCCAACCCCGTTATT
*
702332 TTCGAGGGAATACTCCAACC
1 ATCGA-GG-ATACTCCAACC
702352 TCAATTTTAT
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
26 4 0.10
27 3 0.08
28 33 0.82
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.26
Consensus pattern (26 bp):
ATCGAGGATACTCCAACCCCGTTATT
Found at i:702390 original size:107 final size:107
Alignment explanation
Indices: 702204--702431 Score: 282
Period size: 107 Copynumber: 2.1 Consensus size: 107
702194 TCACAATTGG
* ** * * ***
702204 GGATACTCCAACCCTGTTATTTTCGAGGGGATACTCCAACCCCGGCTTTATACCTAAAATATTGA
1 GGATACTCCAACCCTGTTATTTTCGAGGGAATACTCCAACCCCAACTTTATACCCAAAACACCAA
*
702269 TTTTTCATAATCGGGGATACTCCAACCCCGTTATGTCATCGA
66 TTTTTCACAATCGGGGATACTCCAACCCCGTTATGTCATCGA
* * *
702311 GGATACTCCAATCCC-GTTATTTTCGAGGGAATACTCCAACCTCAATTTTATTCCCAAAACACCA
1 GGATACTCCAA-CCCTGTTATTTTCGAGGGAATACTCCAACCCCAACTTTATACCCAAAACACCA
* *
702375 ATTTTTCACAATCGGGGATACTCCAATCCCGTTATTTC--CGA
65 ATTTTTCACAATCGGGGATACTCCAACCCCGTTATGTCATCGA
702416 GGGGATACTCCAACCC
1 --GGATACTCCAACCC
702432 CGATTTTATT
Statistics
Matches: 104, Mismatches: 14, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
105 3 0.03
106 3 0.03
107 95 0.91
108 3 0.03
ACGTcount: A:0.27, C:0.28, G:0.15, T:0.29
Consensus pattern (107 bp):
GGATACTCCAACCCTGTTATTTTCGAGGGAATACTCCAACCCCAACTTTATACCCAAAACACCAA
TTTTTCACAATCGGGGATACTCCAACCCCGTTATGTCATCGA
Done.