Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold295
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1524207
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 6 of 10
Found at i:702454 original size:79 final size:79
Alignment explanation
Indices: 702306--702473 Score: 255
Period size: 79 Copynumber: 2.1 Consensus size: 79
702296 CCGTTATGTC
* * * *
702306 ATCGAGGATACTCCAATCCCGTTATTTTCGAGGGAATACTCCAACCTCAATTTTATTCCCAAAAC
1 ATCGGGGATACTCCAATCCCGTTATTTCCGAGGGAATACTCCAACCCCAATTTTATTCCAAAAAC
702371 ACCAATTTTTCACA
66 ACCAATTTTTCACA
* * * *
702385 ATCGGGGATACTCCAATCCCGTTATTTCCGAGGGGATACTCCAACCCCGATTTTATTTCAAAAAT
1 ATCGGGGATACTCCAATCCCGTTATTTCCGAGGGAATACTCCAACCCCAATTTTATTCCAAAAAC
702450 ACCAATTTTTCACA
66 ACCAATTTTTCACA
*
702464 ATCGGAGATA
1 ATCGGGGATA
702474 TTCTAACTCC
Statistics
Matches: 80, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
79 80 1.00
ACGTcount: A:0.31, C:0.26, G:0.13, T:0.30
Consensus pattern (79 bp):
ATCGGGGATACTCCAATCCCGTTATTTCCGAGGGAATACTCCAACCCCAATTTTATTCCAAAAAC
ACCAATTTTTCACA
Found at i:702590 original size:130 final size:131
Alignment explanation
Indices: 702353--702609 Score: 374
Period size: 130 Copynumber: 2.0 Consensus size: 131
702343 ACTCCAACCT
* *
702353 CAATTTTATTCCCAAAACACCAATTTTTCACAATCGGGGATACTCCAATCCCGTTATTTCCGAGG
1 CAATTTTATTCCCAAAACACCAATTTCTCACAATCGGGGATACTCCAACCCCGTTATTTCCGAGG
* *
702418 GGATACTCCAACCCCGATTTTATTTCAAAAATACCAATTTTT-CACAATCGGAGATATTCTAACT
66 GGATACTCCAACCCCGATTTTATTTCAAAAACACCAATTTTTCCACAATCGGAGATACTCTAACT
702482 C
131 C
* *
702483 CAATTTTATTTCCAAAACACCAATTTCTCACAATCGGGGATACTCCAACCCCGTTATTTCTGAGG
1 CAATTTTATTCCCAAAACACCAATTTCTCACAATCGGGGATACTCCAACCCCGTTATTTCCGAGG
* * *** * *
702548 GGATACTCCAGCCTCGATTTTTATTTCTGGAACACCAA-TTTTCCATAATCGGGGATACTCTA
66 GGATACTCCAACCCCGA-TTTTATTTCAAAAACACCAATTTTTCCACAATCGGAGATACTCTA
702610 GCCCCGTTGT
Statistics
Matches: 112, Mismatches: 13, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
130 80 0.71
131 32 0.29
ACGTcount: A:0.30, C:0.26, G:0.12, T:0.32
Consensus pattern (131 bp):
CAATTTTATTCCCAAAACACCAATTTCTCACAATCGGGGATACTCCAACCCCGTTATTTCCGAGG
GGATACTCCAACCCCGATTTTATTTCAAAAACACCAATTTTTCCACAATCGGAGATACTCTAACT
C
Found at i:708144 original size:55 final size:55
Alignment explanation
Indices: 708013--708570 Score: 613
Period size: 55 Copynumber: 9.9 Consensus size: 55
708003 TATTCTTTTT
*
708013 AAAGCCCACACAAGTTGGTGGCACCTTT-AGTCCTCAAAGAGTAGGACGCCTTTTC
1 AAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACGCC-TTTC
* *
708068 TTTTTAAAGCCCACACGAGTTGGTGACACCTTTCAGTCCTCAAAGAGCAGGACGCCTTTC
1 -----AAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACGCCTTTC
* *
708128 AAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGATGTCTTTC
1 AAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACGCCTTTC
*
708183 AAAGCCCACACAAGTTGGTGGCA--TTTCCCAATCCTCAAAGAGCAGGACGCCTTTTC
1 AAAGCCCACACAAGTTGGTGGCACCTTT--CAGTCCTCAAAGAGCAGGACGCC-TTTC
* * * * *
708239 TTTTTAAAGCTCACACAAGTTGGTGGCGCCTTTTAGTCCTCAAAGAGTAGGACGTCTTTC
1 -----AAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACGCCTTTC
* * *
708299 AAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAAAGCAGGACGTCTTTC
1 AAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACGCCTTTC
* * * *
708354 CAAGCCCACAAAAGTTAGG-GGCACCTTTCAGTTCTCAAAGAGCAAGACGCCTTTC
1 AAAGCCCACACAAGTT-GGTGGCACCTTTCAGTCCTCAAAGAGCAGGACGCCTTTC
* * ** * *
708409 AAAACCCACACAATTTGGTGGCATTTTTTTTAGTCCTCAAAGAGCAGGATGCCTTTC
1 AAAGCCCACACAAGTTGGTGGCA--CCTTTCAGTCCTCAAAGAGCAGGACGCCTTTC
* ** * * *
708466 AAAGCCCACACAAATTGGTGGCATTTTTTTAGTCCTCGAAGAGCAGGACGCCTTTT
1 AAAGCCCACACAAGTTGGTGGCA-CCTTTCAGTCCTCAAAGAGCAGGACGCCTTTC
* * *
708522 AAAGCTCACACAAGTTGGTGGCA-CTTCCCAATCCTCAAAGAGCAGGACG
1 AAAGCCCACACAAGTTGGTGGCACCTT-TCAGTCCTCAAAGAGCAGGACG
708571 TTCTCTCATT
Statistics
Matches: 431, Mismatches: 51, Indels: 37
0.83 0.10 0.07
Matches are distributed among these distances:
53 3 0.01
54 4 0.01
55 222 0.52
56 57 0.13
57 47 0.11
60 34 0.08
61 61 0.14
63 3 0.01
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.25
Consensus pattern (55 bp):
AAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACGCCTTTC
Found at i:708279 original size:171 final size:170
Alignment explanation
Indices: 708013--708570 Score: 702
Period size: 171 Copynumber: 3.3 Consensus size: 170
708003 TATTCTTTTT
* *
708013 AAAGCCCACACAAGTTGGTGGCACCTTT-AGTCCTCAAAGAGTAGGACGCCTTTTCTTTTTAAAG
1 AAAGCCCACACAAGTTGGTGGCA-CTTTCAATCCTCAAAGAGCAGGACGCCTTTTCTTTTTAAAG
* * *
708077 CCCACACGAGTTGGTGACACCTTTCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAG
65 CCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAG
* *
708142 TTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGATGTCTTTC
130 TTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGACGTCTTTC
708183 AAAGCCCACACAAGTTGGTGGCA-TTTCCCAATCCTCAAAGAGCAGGACGCCTTTTCTTTTTAAA
1 AAAGCCCACACAAGTTGGTGGCACTTT--CAATCCTCAAAGAGCAGGACGCCTTTTCTTTTTAAA
* * * *
708247 GCTCACACAAGTTGGTGGCGCCTTTTAGTCCTCAAAGAGTAGGACGTCTTTCAAAGCCCACACAA
64 GCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAA
*
708312 GTTGGTGGCACTTTTCAGTCCTCAAAAAGCAGGACGTCTTTC
129 GTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGACGTCTTTC
* * * * *
708354 CAAGCCCACAAAAGTTAGG-GGCACCTTTCAGTTCTCAAAGAGCAAGACGCC-TTTC-----AAA
1 AAAGCCCACACAAGTT-GGTGGCA-CTTTCAATCCTCAAAGAGCAGGACGCCTTTTCTTTTTAAA
* * ** *
708412 ACCCACACAATTTGGTGGCATTTTTTTTAGTCCTCAAAGAGCAGGATGCCTTTCAAAGCCCACAC
64 GCCCACACAAGTTGGTGGCA--CCTTTTAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACAC
* * * * * *
708477 AAATTGGTGGCATTTTTTTAGTCCTCGAAGAGCAGGACGCCTTTT
127 AAGTTGGTGGCA-CTTTTCAGTCCTCAAAGAGCAGGACGTCTTTC
* *
708522 AAAGCTCACACAAGTTGGTGGCACTTCCCAATCCTCAAAGAGCAGGACG
1 AAAGCCCACACAAGTTGGTGGCACTT-TCAATCCTCAAAGAGCAGGACG
708571 TTCTCTCATT
Statistics
Matches: 337, Mismatches: 40, Indels: 24
0.84 0.10 0.06
Matches are distributed among these distances:
165 19 0.06
167 54 0.16
168 64 0.19
170 27 0.08
171 168 0.50
172 2 0.01
173 3 0.01
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.25
Consensus pattern (170 bp):
AAAGCCCACACAAGTTGGTGGCACTTTCAATCCTCAAAGAGCAGGACGCCTTTTCTTTTTAAAGC
CCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGT
TGGTGGCACTTTTCAGTCCTCAAAGAGCAGGACGTCTTTC
Found at i:708738 original size:60 final size:60
Alignment explanation
Indices: 708610--708838 Score: 285
Period size: 60 Copynumber: 3.9 Consensus size: 60
708600 AAGCAAGACG
* *
708610 TCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCTAGTCCTCAAAGAGCATGATGCCTTT
1 TCTTTTAAAGCCCACACAAGTTGGTGGCAC-CTTCTAGTCCTCAAAGAGCAGGATGCCTTT
708671 TCCTTTTAAAGCCCACACAAGTTGGTGGCACCTT-TAGTCCTCAAAGAGCAGGATGCCTTT
1 T-CTTTTAAAGCCCACACAAGTTGGTGGCACCTTCTAGTCCTCAAAGAGCAGGATGCCTTT
** * *
708731 TCTTTTTAAAGCCCACACAAGTTGGTGGCATTTTTTAGTCCTTAAAGAGCAGG-TG-C---
1 TC-TTTTAAAGCCCACACAAGTTGGTGGCACCTTCTAGTCCTCAAAGAGCAGGATGCCTTT
* * *
708787 -CTTTTAAAGCCCACACAAGTTAGTGGCA-CTTCCCAGTCCTTAAAGAGCAGGA
1 TCTTTTAAAGCCCACACAAGTTGGTGGCACCTT-CTAGTCCTCAAAGAGCAGGA
708839 CGCTCTCTCC
Statistics
Matches: 154, Mismatches: 9, Indels: 16
0.86 0.05 0.09
Matches are distributed among these distances:
53 2 0.01
54 43 0.28
55 1 0.01
59 2 0.01
60 57 0.37
61 20 0.13
62 29 0.19
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (60 bp):
TCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCTAGTCCTCAAAGAGCAGGATGCCTTT
Found at i:708793 original size:54 final size:54
Alignment explanation
Indices: 708734--708837 Score: 163
Period size: 54 Copynumber: 1.9 Consensus size: 54
708724 TGCCTTTTCT
* * ***
708734 TTTTAAAGCCCACACAAGTTGGTGGCATTTTTTAGTCCTTAAAGAGCAGGTGCC
1 TTTTAAAGCCCACACAAGTTAGTGGCACTTCCCAGTCCTTAAAGAGCAGGTGCC
708788 TTTTAAAGCCCACACAAGTTAGTGGCACTTCCCAGTCCTTAAAGAGCAGG
1 TTTTAAAGCCCACACAAGTTAGTGGCACTTCCCAGTCCTTAAAGAGCAGG
708838 ACGCTCTCTC
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
54 45 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (54 bp):
TTTTAAAGCCCACACAAGTTAGTGGCACTTCCCAGTCCTTAAAGAGCAGGTGCC
Found at i:708839 original size:270 final size:264
Alignment explanation
Indices: 708328--709052 Score: 905
Period size: 270 Copynumber: 2.7 Consensus size: 264
708318 GGCACTTTTC
* * ** * * *
708328 AGTCCTCAAAAAGCAGGACGTCTTTCCAAGCCCACAAAAGTTAGG-GGCACCTTTC-AGTTCTCA
1 AGTCCTTAAAAAGCAAGACGTCTTTTAAAGCCCACACAAGTT-GGTGGCACTTTTCTAGTCCTCA
* *
708391 AAGAGCAAGACGCC-TTTCAAAACCCACACAATTTGGTGGCATTTTTTTTAGTCCTCAAAGAGCA
65 AAGAGCAAGACGCCTTTTCAAAGCCCACACAAGTTGGTGGCA----TTTTAGTCCTCAAAGAGCA
* *
708455 GGATGCC-TTTC----AAAGCCCACACAAATTGGTGGCATTTTTTTAGTCCTCGAAGAGCAGGAC
126 GGATGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCA-TTTTTTAGTCCTCAAAGAGCAGGAC
* * *
708515 GCCTTTTAAAGCTCACACAAGTTGGTGGCACTTCCCAATCCTCAAAGAGCAGGACGTTCTCTCAT
190 GCCTTTTAAAGCCCACACAAGTTAGTGGCACTTCCCAATCCTCAAAGAGCAGGACGCTCTCTCAT
708580 TTCGCCCTTT
255 TTCGCCCTTT
708590 AGTCCTTAAAAAGCAAGACGTCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCTAGTCCTCAA
1 AGTCCTTAAAAAGCAAGACGTCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCTAGTCCTCAA
* * *
708655 AGAGCATGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTAGTCCTCAAAGAGC
66 AGAGCAAGACGCCTTTT-C----AAAGCCCACACAAGTTGGTGGCA-TTTTAGTCCTCAAAGAGC
*
708720 AGGATGCCTTTTCTTTTTAAAGCCCACACAAGTTGGTGGCATTTTTTAGTCCTTAAAGAGCAGG-
125 AGGATGCCTTTTC-TTTTAAAGCCCACACAAGTTGGTGGCATTTTTTAGTCCTCAAAGAGCAGGA
* * * *
708784 TGCCTTTTAAAGCCCACACAAGTTAGTGGCACTTCCCAGTCCTTAAAGAGCAGGACGCTCTCTCC
189 CGCCTTTTAAAGCCCACACAAGTTAGTGGCACTTCCCAATCCTCAAAGAGCAGGACGCTCTCTCA
*
708849 TTTCGTCCTTT
254 TTTCGCCCTTT
* *
708860 AGT-CTTCAAAGAGCAAGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCTAGTCCTCA
1 AGTCCTT-AAAAAGCAAGACGTCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCTAGTCCTCA
* * * *
708924 AAGAGCAGGACG-CTTTTCAAAGCCTACACAAGTTGGTGGCATTTTCCAATCCTCAAAGAGTAGG
65 AAGAGCAAGACGCCTTTTCAAAGCCCACACAAGTTGGTGGCATTTT--AGTCCTCAAAGAGCAGG
* * * ** *
708988 ACGCTTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCTAGTCCTCAAAGAGTAGGACGC
128 ATGCCTTTT-CTTTTAAAGCCCACACAAGTTGGTGGCATTTTTTAGTCCTCAAAGAGCAGGACGC
709053 TCTCTCTTTT
Statistics
Matches: 404, Mismatches: 40, Indels: 34
0.85 0.08 0.07
Matches are distributed among these distances:
261 2 0.00
262 46 0.11
263 22 0.05
264 25 0.06
265 68 0.17
266 28 0.07
267 4 0.01
268 1 0.00
269 29 0.07
270 136 0.34
271 21 0.05
272 22 0.05
ACGTcount: A:0.27, C:0.26, G:0.19, T:0.28
Consensus pattern (264 bp):
AGTCCTTAAAAAGCAAGACGTCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCTAGTCCTCAA
AGAGCAAGACGCCTTTTCAAAGCCCACACAAGTTGGTGGCATTTTAGTCCTCAAAGAGCAGGATG
CCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCATTTTTTAGTCCTCAAAGAGCAGGACGCCTTT
TAAAGCCCACACAAGTTAGTGGCACTTCCCAATCCTCAAAGAGCAGGACGCTCTCTCATTTCGCC
CTTT
Found at i:708893 original size:94 final size:94
Alignment explanation
Indices: 708764--708937 Score: 262
Period size: 94 Copynumber: 1.9 Consensus size: 94
708754 GGTGGCATTT
** *
708764 TTTAGTCCTTAAAGAGCAGGTGCCTTTTAAAGCCCACACAAGTTAGTGGCAC-TTCCCAGTCCTT
1 TTTAGTCCTTAAAGAGCAGACGCCTTTTAAAGCCCACACAAGTTAGTGGCACTTTCCCAGTCCTC
708828 AAAGAGCAGGACGCTCTCTCCTTTCGTCC
66 AAAGAGCAGGACGCTCTCTCCTTTCGTCC
* * *
708857 TTTAGT-CTTCAAAGAGCAAGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCTAGTCC
1 TTTAGTCCTT-AAAGAGC-AGACGCCTTTTAAAGCCCACACAAGTTAGTGGCACTTTCCCAGTCC
708921 TCAAAGAGCAGGACGCT
64 TCAAAGAGCAGGACGCT
708938 TTTCAAAGCC
Statistics
Matches: 72, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
92 3 0.04
93 13 0.18
94 32 0.44
95 24 0.33
ACGTcount: A:0.26, C:0.27, G:0.20, T:0.27
Consensus pattern (94 bp):
TTTAGTCCTTAAAGAGCAGACGCCTTTTAAAGCCCACACAAGTTAGTGGCACTTTCCCAGTCCTC
AAAGAGCAGGACGCTCTCTCCTTTCGTCC
Found at i:708926 original size:56 final size:56
Alignment explanation
Indices: 708859--709052 Score: 232
Period size: 61 Copynumber: 3.4 Consensus size: 56
708849 TTTCGTCCTT
* *
708859 TAGTCTTCAAAGAGCAAGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTC
1 TAGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTC
*
708915 TAGTCCTCAAAGAGCAGGACG-CTTTTCAAAGCCTACACAAGTTGGTGGCA-TTTTC
1 TAGTCCTCAAAGAGCAGGACGCCTTTT-AAAGCCCACACAAGTTGGTGGCACTTTTC
* * * *
708970 CAATCCTCAAAGAGTAGGACGCTTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCAC-TTCC
1 TAGTCCTCAAAGAGCAGGACG------CCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTC
*
709031 TAGTCCTCAAAGAGTAGGACGC
1 TAGTCCTCAAAGAGCAGGACGC
709053 TCTCTCTTTT
Statistics
Matches: 119, Mismatches: 10, Indels: 19
0.80 0.07 0.13
Matches are distributed among these distances:
55 29 0.24
56 41 0.34
61 44 0.37
62 5 0.04
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (56 bp):
TAGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTC
Found at i:709027 original size:211 final size:208
Alignment explanation
Indices: 708672--709266 Score: 687
Period size: 211 Copynumber: 2.8 Consensus size: 208
708662 GATGCCTTTT
*
708672 CCTTTTAAAGCCCACACAAGTTGGTGGCACCTT-TAGTCCTCAAAGAGCAGGATGCCTTTTCTTT
1 CCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCTAGTCCTCAAAGAGCAGGACGCCTTTTC---
* * *
708736 TTAAAGCCCACACAAGTTGGTGGCATTTTTTAGTCCTTAAAGAGCA-G-G----TGCCTTTTAAA
63 --AAAGCCCACACAAGTTGGTGGCA-TTTTCAGTCCTCAAAGAGCAGGAGCTTTTTCCTTTTAAA
*
708795 GCCCACACAAGTTAGTGGCACTTCCCAGTCCTTAAAGAGCAGGACGCTCTCTCCTTTCGTCC-TT
125 GCCCACACAAGTTGGTGGCACTTCCCAGTCCTTAAAGAGCAGGACGCTCTCTCCTTTCG-CCTTT
*
708859 TAGTCTTCAAAGAGCAAGACG
189 TA-TCCTCAAAGAGCAAGACG
*
708880 CCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCTAGTCCTCAAAGAGCAGGACG-CTTTTCAA
1 CCTTTTAAAGCCCACACAAGTTGGTGGCAC-CTTCTAGTCCTCAAAGAGCAGGACGCCTTTTCAA
* * *
708944 AGCCTACACAAGTTGGTGGCATTTTCCAATCCTCAAAGAGTAGGACGCTTTTTCCTTTTAAAGCC
65 AGCCCACACAAGTTGGTGGCATTTT-CAGTCCTCAAAGAGCAGGA-GCTTTTTCCTTTTAAAGCC
* * * *
709009 CACACAAGTTGGTGGCACTTCCTAGTCCTCAAAGAGTAGGACGCTCTCTCTTTTCGCCTTTTTAT
128 CACACAAGTTGGTGGCACTTCCCAGTCCTTAAAGAGCAGGACGCTCTCTCCTTTCGCC-TTTTAT
*
709074 CCTCAAAGAGCAAGATG
192 CCTCAAAGAGCAAGACG
* *
709091 CCTTTTAAAGCCCACACAAGCTAGTGGCACCTTC-AGTCCTCAAAGAGCAGGACGCCATCTCCTT
1 CCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCTAGTCCTCAAAGAGCAGGACG-C--CT--TT
* * * *
709155 TTAAATCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGAATGCTTTCTT--TTTAC
61 TCAAAGCCCACACAAGTTGGTGGCA-TTTTCAGTCCTCAAAGAGCAGGA-GCTTT-TTCCTTT-T
* *
709218 AAAGCCCACACAAGTTGGTGGCACCTT-CCAGTCTTTAAAG-GGAGGACGC
122 AAAGCCCACACAAGTTGGTGGCA-CTTCCCAGTCCTTAAAGAGCAGGACGC
709267 CTTTTCTTTT
Statistics
Matches: 335, Mismatches: 30, Indels: 38
0.83 0.07 0.09
Matches are distributed among these distances:
203 4 0.01
204 34 0.10
205 1 0.00
207 1 0.00
208 30 0.09
209 28 0.08
210 25 0.07
211 108 0.32
212 4 0.01
213 2 0.01
214 11 0.03
215 78 0.23
216 9 0.03
ACGTcount: A:0.26, C:0.27, G:0.19, T:0.28
Consensus pattern (208 bp):
CCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCTAGTCCTCAAAGAGCAGGACGCCTTTTCAAA
GCCCACACAAGTTGGTGGCATTTTCAGTCCTCAAAGAGCAGGAGCTTTTTCCTTTTAAAGCCCAC
ACAAGTTGGTGGCACTTCCCAGTCCTTAAAGAGCAGGACGCTCTCTCCTTTCGCCTTTTATCCTC
AAAGAGCAAGACG
Found at i:709110 original size:155 final size:156
Alignment explanation
Indices: 708909--709198 Score: 399
Period size: 154 Copynumber: 1.9 Consensus size: 156
708899 GTTGGTGGCA
* * * * **
708909 CTTTTCTAGTCCTCAAAGAGCAGGACGCTTTTCAAAGCCTACACAAGTTGGTGGCATTTTCCAAT
1 CTTTTCTAGTCCTCAAAGAGCAAGACGCTTTTCAAAGCCCACACAAGCTAGTGGCACCTT-CAAT
* ** *
708974 CCTCAAAGAGTAGGACGCTTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTC-CTAGTCCT
65 CCTCAAAGAGCAGGACGCCATCTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTCTC-AGTCCT
709038 CAAAGAGTAGGACGCTCTCTCTTTTCGC
129 CAAAGAGTAGGACGCTCTCTCTTTTCGC
* *
709066 CTTTT-TA-TCCTCAAAGAGCAAGATGCCTTTT-AAAGCCCACACAAGCTAGTGGCACCTTCAGT
1 CTTTTCTAGTCCTCAAAGAGCAAGACG-CTTTTCAAAGCCCACACAAGCTAGTGGCACCTTCAAT
* *
709128 CCTCAAAGAGCAGGACGCCATCTCCTTTTAAATCCCACACAAGTTGGTGGCACTTTTCAGTCCTC
65 CCTCAAAGAGCAGGACGCCATCTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTCTCAGTCCTC
709193 AAAGAG
130 AAAGAG
709199 CAGAATGCTT
Statistics
Matches: 117, Mismatches: 14, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
154 66 0.56
155 39 0.33
156 7 0.06
157 5 0.04
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.28
Consensus pattern (156 bp):
CTTTTCTAGTCCTCAAAGAGCAAGACGCTTTTCAAAGCCCACACAAGCTAGTGGCACCTTCAATC
CTCAAAGAGCAGGACGCCATCTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTCTCAGTCCTCA
AAGAGTAGGACGCTCTCTCTTTTCGC
Found at i:709226 original size:61 final size:61
Alignment explanation
Indices: 709093--709325 Score: 253
Period size: 61 Copynumber: 3.9 Consensus size: 61
709083 GCAAGATGCC
* * * * *
709093 TTTT-AAAGCCCACACAAGCTAGTGGCAC-CTTCAGTCCTCAAAGAGCAGGACGCCATCTCC
1 TTTTCAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGACGCC-TTTCT
* * *
709153 TTTT-AAATCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGAATG-CTTTCT
1 TTTTCAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGACGCCTTTCT
* * * * *
709212 TTTTACAAAGCCCACACAAGTTGGTGGCACCTTCCAGTCTTTAAAG-GGAGGACGCCTTT-T
1 TTTT-CAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGACGCCTTTCT
* * *
709272 CTTTTCAAAGCTCACACGAGTTGGTGGCACTTTTCAGTCCTCAAAGAGTAGGAC
1 -TTTTCAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGAC
709326 ACACTTCCTT
Statistics
Matches: 144, Mismatches: 23, Indels: 11
0.81 0.13 0.06
Matches are distributed among these distances:
59 7 0.05
60 67 0.47
61 70 0.49
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.27
Consensus pattern (61 bp):
TTTTCAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGACGCCTTTCT
Found at i:709288 original size:121 final size:121
Alignment explanation
Indices: 709097--709319 Score: 324
Period size: 121 Copynumber: 1.8 Consensus size: 121
709087 GATGCCTTTT
*
709097 AAAGCCCACACAAGCTAGTGGCACCTTCAGTCCTCAAAGAGCAGGACGCCATCTCCTTTTAAATC
1 AAAGCCCACACAAGCTAGTGGCACCTTCAGTCCTCAAAGAGCAGGACGCCATCTCCTTTTAAAGC
709162 CCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGAATGCTTTCTTTTTAC
66 CCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGAATGCTTTCTTTTTAC
* * * * * * *
709218 AAAGCCCACACAAGTTGGTGGCACCTTCCAGTCTTTAAAG-GGAGGACGCC-TTTTCTTTTCAAA
1 AAAGCCCACACAAGCTAGTGGCACCTT-CAGTCCTCAAAGAGCAGGACGCCATCTCCTTTT-AAA
* *
709281 GCTCACACGAGTTGGTGGCACTTTTCAGTCCTCAAAGAG
64 GCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAG
709320 TAGGACACAC
Statistics
Matches: 90, Mismatches: 10, Indels: 4
0.87 0.10 0.04
Matches are distributed among these distances:
120 7 0.08
121 73 0.81
122 10 0.11
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.26
Consensus pattern (121 bp):
AAAGCCCACACAAGCTAGTGGCACCTTCAGTCCTCAAAGAGCAGGACGCCATCTCCTTTTAAAGC
CCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGAATGCTTTCTTTTTAC
Found at i:709407 original size:42 final size:42
Alignment explanation
Indices: 709309--709432 Score: 113
Period size: 42 Copynumber: 2.9 Consensus size: 42
709299 CACTTTTCAG
* * ** * *
709309 TCCTCAAAGAGTAGGACACACTTCCTTCCCTTCTTTTCTCTTTTG
1 TCCTCAAAGAGCAGGACGCACTTTATTTCC--CTTTT-TCTTTTA
* *
709354 TCCTCAAAGAGCATGACGCACTTTATTTTCCTTTTTCTTTTA
1 TCCTCAAAGAGCAGGACGCACTTTATTTCCCTTTTTCTTTTA
* ***
709396 TCCTCAGAGAGCAGGACGTTTTTTATTTCCCTTTTTC
1 TCCTCAAAGAGCAGGACGCACTTTATTTCCCTTTTTC
709433 CTTTGTTCTT
Statistics
Matches: 65, Mismatches: 14, Indels: 3
0.79 0.17 0.04
Matches are distributed among these distances:
42 37 0.57
43 5 0.08
45 23 0.35
ACGTcount: A:0.19, C:0.27, G:0.12, T:0.43
Consensus pattern (42 bp):
TCCTCAAAGAGCAGGACGCACTTTATTTCCCTTTTTCTTTTA
Found at i:710274 original size:13 final size:13
Alignment explanation
Indices: 710256--710281 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
710246 CATTATTCAA
710256 TGTATCGATACAT
1 TGTATCGATACAT
710269 TGTATCGATACAT
1 TGTATCGATACAT
710282 CGATCTTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:710345 original size:20 final size:19
Alignment explanation
Indices: 710320--710427 Score: 93
Period size: 20 Copynumber: 5.8 Consensus size: 19
710310 TTTACCCAGA
*
710320 TGTATCGATACATTTTGCAT
1 TGTATCGATACATTCT-CAT
*
710340 TGTATCGATACATCGCTCAT
1 TGTATCGATACAT-TCTCAT
710360 TGTATCGAT--A----CAT
1 TGTATCGATACATTCTCAT
710373 TGTATCGATACATTGCTCAT
1 TGTATCGATACATT-CTCAT
* * *
710393 TGTATCGATAAATTTTACAA
1 TGTATCGATACATTCT-CAT
710413 TGTATCGATACATTC
1 TGTATCGATACATTC
710428 AGGTATTTTT
Statistics
Matches: 72, Mismatches: 7, Indels: 18
0.74 0.07 0.19
Matches are distributed among these distances:
13 12 0.17
15 1 0.01
18 1 0.01
19 1 0.01
20 56 0.78
21 1 0.01
ACGTcount: A:0.29, C:0.18, G:0.14, T:0.40
Consensus pattern (19 bp):
TGTATCGATACATTCTCAT
Found at i:710375 original size:13 final size:13
Alignment explanation
Indices: 710357--710387 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
710347 ATACATCGCT
710357 CATTGTATCGATA
1 CATTGTATCGATA
710370 CATTGTATCGATA
1 CATTGTATCGATA
710383 CATTG
1 CATTG
710388 CTCATTGTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.29, C:0.16, G:0.16, T:0.39
Consensus pattern (13 bp):
CATTGTATCGATA
Found at i:710379 original size:33 final size:33
Alignment explanation
Indices: 710337--710402 Score: 123
Period size: 33 Copynumber: 2.0 Consensus size: 33
710327 ATACATTTTG
710337 CATTGTATCGATACATCGCTCATTGTATCGATA
1 CATTGTATCGATACATCGCTCATTGTATCGATA
*
710370 CATTGTATCGATACATTGCTCATTGTATCGATA
1 CATTGTATCGATACATCGCTCATTGTATCGATA
710403 AATTTTACAA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.27, C:0.20, G:0.15, T:0.38
Consensus pattern (33 bp):
CATTGTATCGATACATCGCTCATTGTATCGATA
Found at i:717724 original size:23 final size:23
Alignment explanation
Indices: 717692--717749 Score: 98
Period size: 23 Copynumber: 2.5 Consensus size: 23
717682 TAAATTTTAA
*
717692 ATAAGATCATTAGATAAAAATTG
1 ATAATATCATTAGATAAAAATTG
*
717715 ATCATATCATTAGATAAAAATTG
1 ATAATATCATTAGATAAAAATTG
717738 ATAATATCATTA
1 ATAATATCATTA
717750 ATTTTTAATT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 32 1.00
ACGTcount: A:0.50, C:0.07, G:0.09, T:0.34
Consensus pattern (23 bp):
ATAATATCATTAGATAAAAATTG
Found at i:719170 original size:13 final size:13
Alignment explanation
Indices: 719152--719177 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
719142 TACACAAAGT
719152 ATGTATCGATACA
1 ATGTATCGATACA
719165 ATGTATCGATACA
1 ATGTATCGATACA
719178 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:721353 original size:84 final size:84
Alignment explanation
Indices: 721212--721385 Score: 203
Period size: 84 Copynumber: 2.1 Consensus size: 84
721202 ACTCAAAGAA
* * * *
721212 GAAAATAAATCAATAAGTGTAGAGAATGATATTCTTGAAAAGAAATTAAGTGAATTAGAGAAGAA
1 GAAAATAAATCAATAAGTGTAGAAAATGATATTCTTAAAAAGAAAATAAATGAATTAGAGAAGAA
*
721277 TATGAAA-GAGTTACAAAAT-
66 -AAGAAATGAGTTAC-AAATG
* * *
721296 GAAAATAAATCAATGAGTTTAGAAAAT-A-ATTCTTTTAAAAAGAAAATAAATGAATTAGAGGAG
1 GAAAATAAATCAATAAGTGTAGAAAATGATATTC--TTAAAAAGAAAATAAATGAATTAGAGAAG
*
721359 AAAAGAAATGAGTTGCAAATG
64 AAAAGAAATGAGTTACAAATG
721380 GAAAAT
1 GAAAAT
721386 GATGAATTGG
Statistics
Matches: 77, Mismatches: 9, Indels: 8
0.82 0.10 0.09
Matches are distributed among these distances:
82 4 0.05
83 10 0.13
84 63 0.82
ACGTcount: A:0.53, C:0.03, G:0.18, T:0.25
Consensus pattern (84 bp):
GAAAATAAATCAATAAGTGTAGAAAATGATATTCTTAAAAAGAAAATAAATGAATTAGAGAAGAA
AAGAAATGAGTTACAAATG
Found at i:724448 original size:13 final size:13
Alignment explanation
Indices: 724430--724455 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
724420 TACACAAAGT
724430 ATGTATCGATACA
1 ATGTATCGATACA
724443 ATGTATCGATACA
1 ATGTATCGATACA
724456 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:724453 original size:32 final size:33
Alignment explanation
Indices: 724412--724475 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 33
724402 TAGCCAAACT
**
724412 TGTATCGATACACAAAGTA-TGTATCGATACAA
1 TGTATCGATACACAAAAAATTGTATCGATACAA
724444 TGTATCGATACACAAAAAATTGTATCGATACA
1 TGTATCGATACACAAAAAATTGTATCGATACA
724476 TTGGCTTGTA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 17 0.59
33 12 0.41
ACGTcount: A:0.42, C:0.16, G:0.14, T:0.28
Consensus pattern (33 bp):
TGTATCGATACACAAAAAATTGTATCGATACAA
Found at i:726005 original size:15 final size:15
Alignment explanation
Indices: 725985--726015 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
725975 CATACTTGAG
725985 TTTCTTTTTTCTCTT
1 TTTCTTTTTTCTCTT
*
726000 TTTCTTTTTTTTCTT
1 TTTCTTTTTTCTCTT
726015 T
1 T
726016 CACTTTTACT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (15 bp):
TTTCTTTTTTCTCTT
Found at i:726021 original size:21 final size:21
Alignment explanation
Indices: 725992--726032 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
725982 GAGTTTCTTT
* *
725992 TTTCTCTTTTTCTTTTTTTTC
1 TTTCACTTTTACTTTTTTTTC
726013 TTTCACTTTTACTTTTTTTT
1 TTTCACTTTTACTTTTTTTT
726033 TCATGAATCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.05, C:0.17, G:0.00, T:0.78
Consensus pattern (21 bp):
TTTCACTTTTACTTTTTTTTC
Found at i:727254 original size:21 final size:21
Alignment explanation
Indices: 727229--727276 Score: 87
Period size: 21 Copynumber: 2.3 Consensus size: 21
727219 TTTTGCCTAT
*
727229 ATGTATCGATACATGCCTTTC
1 ATGTATCGATACATGCCTCTC
727250 ATGTATCGATACATGCCTCTC
1 ATGTATCGATACATGCCTCTC
727271 ATGTAT
1 ATGTAT
727277 TAATATATAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.25, C:0.23, G:0.15, T:0.38
Consensus pattern (21 bp):
ATGTATCGATACATGCCTCTC
Found at i:727440 original size:20 final size:21
Alignment explanation
Indices: 727415--727468 Score: 74
Period size: 21 Copynumber: 2.6 Consensus size: 21
727405 ATGAAAAAAT
727415 TGTATCGATACATAAGT-AAA
1 TGTATCGATACATAAGTGAAA
***
727435 TGTATCGATACATGCTTGAAA
1 TGTATCGATACATAAGTGAAA
727456 TGTATCGATACAT
1 TGTATCGATACAT
727469 TTTTCATTGT
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
20 14 0.47
21 16 0.53
ACGTcount: A:0.37, C:0.13, G:0.17, T:0.33
Consensus pattern (21 bp):
TGTATCGATACATAAGTGAAA
Found at i:727531 original size:20 final size:20
Alignment explanation
Indices: 727506--727557 Score: 104
Period size: 20 Copynumber: 2.6 Consensus size: 20
727496 TTTTGAACCA
727506 AATGTATCGATACATTCTTC
1 AATGTATCGATACATTCTTC
727526 AATGTATCGATACATTCTTC
1 AATGTATCGATACATTCTTC
727546 AATGTATCGATA
1 AATGTATCGATA
727558 TATGTAAGTA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.33, C:0.17, G:0.12, T:0.38
Consensus pattern (20 bp):
AATGTATCGATACATTCTTC
Found at i:730180 original size:97 final size:96
Alignment explanation
Indices: 730022--730309 Score: 299
Period size: 97 Copynumber: 3.0 Consensus size: 96
730012 CCAACCCCGT
* * * * * * * *
730022 TTTTAAACTCTTCAAGATTTAAATCTTATTTTTACTTAAATTGTCATCATCAGAGATACTCCAAC
1 TTTTAAACTCATCAAGATTTAAATCTTTTTTTTGCCTAAATTGTCATCGTCGGGGACACTCCAAC
* * * *
730087 CCCATTTTTCTGAGGGGATACTCTAATCTTG
66 CCTATTCTTCAGAGGGGATACTCTAATCTAG
* *
730118 TTTCTAAACTCATCAAGATTTAAATATTTTTTTTGCCTAAATTGTCATCGTTGGGGACACTCCAA
1 TTT-TAAACTCATCAAGATTTAAATCTTTTTTTTGCCTAAATTGTCATCGTCGGGGACACTCCAA
* * * *
730183 CCCTATTCTTCCA-AAGGGATACTCCAACCATAC
65 CCCTATTCTT-CAGAGGGGATACTCTAATC-TAG
** * * * * *
730216 TTTTAAACTTGTCAAGACTTAAATCTTTTTTTCGCCCAAATTGTCATCGTCGGGAACATTCCAAC
1 TTTTAAACTCATCAAGATTTAAATCTTTTTTTTGCCTAAATTGTCATCGTCGGGGACACTCCAAC
* *
730281 CCTATTCCTCAGAGGAGATACTCTAATCT
66 CCTATTCTTCAGAGGGGATACTCTAATCT
730310 CATTTTTCAA
Statistics
Matches: 156, Mismatches: 32, Indels: 8
0.80 0.16 0.04
Matches are distributed among these distances:
96 6 0.04
97 145 0.93
98 5 0.03
ACGTcount: A:0.29, C:0.23, G:0.11, T:0.37
Consensus pattern (96 bp):
TTTTAAACTCATCAAGATTTAAATCTTTTTTTTGCCTAAATTGTCATCGTCGGGGACACTCCAAC
CCTATTCTTCAGAGGGGATACTCTAATCTAG
Found at i:732091 original size:2 final size:2
Alignment explanation
Indices: 732084--732128 Score: 81
Period size: 2 Copynumber: 22.5 Consensus size: 2
732074 TTGTGGTTCG
*
732084 TC TC TC TC TT TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
732126 TC T
1 TC T
732129 TTATTACTTT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.00, C:0.47, G:0.00, T:0.53
Consensus pattern (2 bp):
TC
Found at i:735314 original size:24 final size:23
Alignment explanation
Indices: 735270--735316 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 23
735260 TTTTATGTAA
* *
735270 GTATCGATATAAATACCTAATGG
1 GTATCGATAAAAATACATAATGG
*
735293 GTATCGATTAAAAATATATAATGG
1 GTATCGA-TAAAAATACATAATGG
735317 TTGATTTGTC
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
23 7 0.35
24 13 0.65
ACGTcount: A:0.43, C:0.09, G:0.17, T:0.32
Consensus pattern (23 bp):
GTATCGATAAAAATACATAATGG
Found at i:736131 original size:54 final size:54
Alignment explanation
Indices: 736059--736164 Score: 144
Period size: 54 Copynumber: 2.0 Consensus size: 54
736049 TTTTAAAATT
736059 TTTAATATTCAAAAATTAAATTTAACCAAACGTTTAATATATA-AAATATTTAAA
1 TTTAATATTCAAAAATTAAATTTAACCAAACGTTTAATATATATAAAT-TTTAAA
* * **
736113 TTTAATATT-AAAATATTAAGTTTATCCAAGTGTTTAATATATATAAATTTTA
1 TTTAATATTCAAAA-ATTAAATTTAACCAAACGTTTAATATATATAAATTTTA
736165 TCCTAATTTA
Statistics
Matches: 46, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
53 4 0.09
54 38 0.83
55 4 0.09
ACGTcount: A:0.47, C:0.06, G:0.04, T:0.43
Consensus pattern (54 bp):
TTTAATATTCAAAAATTAAATTTAACCAAACGTTTAATATATATAAATTTTAAA
Found at i:736136 original size:20 final size:22
Alignment explanation
Indices: 736090--736136 Score: 71
Period size: 20 Copynumber: 2.2 Consensus size: 22
736080 TTAACCAAAC
736090 GTTTAATATATAAAATATTTAA
1 GTTTAATATATAAAATATTTAA
*
736112 ATTTAATAT-TAAAATA-TTAA
1 GTTTAATATATAAAATATTTAA
736132 GTTTA
1 GTTTA
736137 TCCAAGTGTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 8 0.35
21 7 0.30
22 8 0.35
ACGTcount: A:0.49, C:0.00, G:0.04, T:0.47
Consensus pattern (22 bp):
GTTTAATATATAAAATATTTAA
Found at i:737935 original size:12 final size:12
Alignment explanation
Indices: 737916--737965 Score: 66
Period size: 12 Copynumber: 4.2 Consensus size: 12
737906 TTAAAACAAG
737916 AAAATAAAATGA
1 AAAATAAAATGA
*
737928 AGAATAAAATGA
1 AAAATAAAATGA
*
737940 AAAATAGAGAT-A
1 AAAATA-AAATGA
737952 AAAATAAAATGA
1 AAAATAAAATGA
737964 AA
1 AA
737966 TTTGAATTTT
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
11 3 0.09
12 26 0.81
13 3 0.09
ACGTcount: A:0.72, C:0.00, G:0.12, T:0.16
Consensus pattern (12 bp):
AAAATAAAATGA
Found at i:753685 original size:25 final size:27
Alignment explanation
Indices: 753632--753686 Score: 69
Period size: 25 Copynumber: 2.1 Consensus size: 27
753622 TACGACATTC
* *
753632 TACATATACTATATGATGATATTTGTA
1 TACATATACTATATGATCATATTTATA
*
753659 TACATATAC-ATAT-TTCATATTTATA
1 TACATATACTATATGATCATATTTATA
753684 TAC
1 TAC
753687 CTTAAAAATA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 12 0.48
26 4 0.16
27 9 0.36
ACGTcount: A:0.38, C:0.11, G:0.05, T:0.45
Consensus pattern (27 bp):
TACATATACTATATGATCATATTTATA
Found at i:755703 original size:81 final size:81
Alignment explanation
Indices: 755563--755750 Score: 308
Period size: 81 Copynumber: 2.3 Consensus size: 81
755553 TATAAAAAGT
* *
755563 TACTTCAATTGATTTTTAAATCAATTTCTTTAGTTTGAAACTTAAGTAAAGTTATCCTATAACTT
1 TACTTCAATTGATTTTTAAATCAATTTCTTTAGTTTAAAACTTAAGTAAAGTTACCCTATAACTT
*
755628 CTTTTGCATTAGTTTC
66 CTTTTGCATTAGTTTA
755644 TACTTCAATTGATTTTTAAATCAATTTCTTTAGTTTAAAACTTAAGTAAAGTTACCCTATAACTT
1 TACTTCAATTGATTTTTAAATCAATTTCTTTAGTTTAAAACTTAAGTAAAGTTACCCTATAACTT
755709 CTTTTGCATTAGTTTA
66 CTTTTGCATTAGTTTA
*
755725 T-CATT-AATTGATTTATTCAATCAATT
1 TAC-TTCAATTGATTT-TTAAATCAATT
755751 AATTTCTTAT
Statistics
Matches: 101, Mismatches: 4, Indels: 4
0.93 0.04 0.04
Matches are distributed among these distances:
80 10 0.10
81 91 0.90
ACGTcount: A:0.31, C:0.13, G:0.07, T:0.48
Consensus pattern (81 bp):
TACTTCAATTGATTTTTAAATCAATTTCTTTAGTTTAAAACTTAAGTAAAGTTACCCTATAACTT
CTTTTGCATTAGTTTA
Found at i:756462 original size:20 final size:21
Alignment explanation
Indices: 756437--756486 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 21
756427 TTCTTCAGAA
*
756437 TTAATTTAAAATTATA-ATTT
1 TTAATTTAAAATAATATATTT
*
756457 TTAA-TTAAAGTAATATATTT
1 TTAATTTAAAATAATATATTT
*
756477 TTTATTTAAA
1 TTAATTTAAA
756487 TTTAATTATA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
19 9 0.36
20 11 0.44
21 5 0.20
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (21 bp):
TTAATTTAAAATAATATATTT
Found at i:756590 original size:12 final size:12
Alignment explanation
Indices: 756560--756603 Score: 54
Period size: 12 Copynumber: 3.7 Consensus size: 12
756550 TAATGATTAG
756560 AATTTATAA-ATA
1 AATTTA-AATATA
*
756572 AAATTAAATATA
1 AATTTAAATATA
*
756584 AATTTAAATTTA
1 AATTTAAATATA
756596 AATTTAAA
1 AATTTAAA
756604 ATTTTTTAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
11 2 0.07
12 26 0.93
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (12 bp):
AATTTAAATATA
Found at i:756623 original size:7 final size:6
Alignment explanation
Indices: 756570--756603 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
756560 AATTTATAAA
* *
756570 TAAAAT TAAATA TAAATT TAAATT TAAATT TAAA
1 TAAATT TAAATT TAAATT TAAATT TAAATT TAAA
756604 ATTTTTTAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (6 bp):
TAAATT
Found at i:757062 original size:21 final size:22
Alignment explanation
Indices: 757029--757074 Score: 60
Period size: 21 Copynumber: 2.1 Consensus size: 22
757019 GCACCGTGTA
*
757029 AAAATAATTTATTTATTAT-TT
1 AAAATAATTTATTTAATATATT
757050 AAAA-AATTATATTTAATATATT
1 AAAATAATT-TATTTAATATATT
757072 AAA
1 AAA
757075 TTATTGAATT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
20 4 0.18
21 13 0.59
22 5 0.23
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (22 bp):
AAAATAATTTATTTAATATATT
Found at i:757247 original size:13 final size:13
Alignment explanation
Indices: 757231--757256 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
757221 ATTAAAAGAT
757231 AATAAAAAAATAA
1 AATAAAAAAATAA
757244 AATAAAAAAATAA
1 AATAAAAAAATAA
757257 TTTCATGATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (13 bp):
AATAAAAAAATAA
Found at i:758967 original size:20 final size:20
Alignment explanation
Indices: 758934--758974 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
758924 AAAAAATTAA
758934 ATATTAAATATTAAATAAAT
1 ATATTAAATATTAAATAAAT
* *
758954 ATATTTAATTTTAAATAAAT
1 ATATTAAATATTAAATAAAT
758974 A
1 A
758975 ATAAATTTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (20 bp):
ATATTAAATATTAAATAAAT
Found at i:759136 original size:30 final size:30
Alignment explanation
Indices: 759072--759141 Score: 88
Period size: 30 Copynumber: 2.4 Consensus size: 30
759062 TTTTTTTTTC
* * *
759072 AATT-AAGGGTAATTTTGTAATAAAAATTA
1 AATTGAAGGATAATTTTATAATAAAAATCA
*
759101 GATTGAAGGATAATTTTATAATAAAAATCA
1 AATTGAAGGATAATTTTATAATAAAAATCA
*
759131 AATTGAGGGAT
1 AATTGAAGGAT
759142 GAAAGAATAT
Statistics
Matches: 34, Mismatches: 6, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
29 3 0.09
30 31 0.91
ACGTcount: A:0.47, C:0.01, G:0.17, T:0.34
Consensus pattern (30 bp):
AATTGAAGGATAATTTTATAATAAAAATCA
Found at i:763780 original size:20 final size:21
Alignment explanation
Indices: 763757--763808 Score: 70
Period size: 20 Copynumber: 2.5 Consensus size: 21
763747 AAATTGAACA
**
763757 GTATCGATACATGACCA-AAT
1 GTATCGATACATGAAAAGAAT
*
763777 GTATCGATACTTGAAAAGAAT
1 GTATCGATACATGAAAAGAAT
763798 GTATCGATACA
1 GTATCGATACA
763809 GGTCATTGGC
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
20 14 0.52
21 13 0.48
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.27
Consensus pattern (21 bp):
GTATCGATACATGAAAAGAAT
Found at i:763878 original size:13 final size:13
Alignment explanation
Indices: 763860--763885 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
763850 ACACACAATA
763860 TGTATCGATACAT
1 TGTATCGATACAT
763873 TGTATCGATACAT
1 TGTATCGATACAT
763886 CATAAAATGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:763901 original size:33 final size:32
Alignment explanation
Indices: 763840--763907 Score: 109
Period size: 33 Copynumber: 2.1 Consensus size: 32
763830 GTAGCCAAAT
*
763840 TTGTATCGATACACACAATATGTATCGATACA
1 TTGTATCGATACACACAAAATGTATCGATACA
*
763872 TTGTATCGATACATCATAAAATGTATCGATACA
1 TTGTATCGATACA-CACAAAATGTATCGATACA
763905 TTG
1 TTG
763908 GCTTGTAATG
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
32 13 0.39
33 20 0.61
ACGTcount: A:0.37, C:0.16, G:0.13, T:0.34
Consensus pattern (32 bp):
TTGTATCGATACACACAAAATGTATCGATACA
Found at i:769850 original size:8 final size:8
Alignment explanation
Indices: 769837--769862 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
769827 ATTTGATTCA
769837 ATTTTGTG
1 ATTTTGTG
769845 ATTTTGTG
1 ATTTTGTG
769853 ATTTTGTG
1 ATTTTGTG
769861 AT
1 AT
769863 GAATGATGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.15, C:0.00, G:0.23, T:0.62
Consensus pattern (8 bp):
ATTTTGTG
Found at i:773228 original size:13 final size:13
Alignment explanation
Indices: 773210--773234 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
773200 CAAAGATCAG
773210 TGTATCGATACAA
1 TGTATCGATACAA
773223 TGTATCGATACA
1 TGTATCGATACA
773235 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:773301 original size:19 final size:18
Alignment explanation
Indices: 773277--773406 Score: 101
Period size: 19 Copynumber: 7.8 Consensus size: 18
773267 TAGCTTAAAT
773277 TGTATCGATACAAAACTTA
1 TGTATCGATAC-AAACTTA
773296 TGTATCGATAC--A--T-
1 TGTATCGATACAAACTTA
*
773309 TGTATCGATACATCACTTA
1 TGTATCGATACA-AACTTA
773328 TGTATCGATAC--A-TTA
1 TGTATCGATACAAACTTA
773343 --TATCGATACAACACTTA
1 TGTATCGATACAA-ACTTA
773360 TGTATCGATAC--A--T-
1 TGTATCGATACAAACTTA
773373 TGTATCGATACAACACTTTA
1 TGTATCGATACAA-AC-TTA
773393 TGTATCGATACAAA
1 TGTATCGATACAAA
773407 TCGTTGAAAT
Statistics
Matches: 92, Mismatches: 0, Indels: 38
0.71 0.00 0.29
Matches are distributed among these distances:
13 31 0.34
14 2 0.02
15 3 0.03
16 6 0.07
17 3 0.03
18 1 0.01
19 33 0.36
20 13 0.14
ACGTcount: A:0.36, C:0.18, G:0.12, T:0.35
Consensus pattern (18 bp):
TGTATCGATACAAACTTA
Found at i:773314 original size:13 final size:13
Alignment explanation
Indices: 773296--773384 Score: 61
Period size: 13 Copynumber: 5.9 Consensus size: 13
773286 ACAAAACTTA
773296 TGTATCGATACAT
1 TGTATCGATACAT
773309 TGTATCGATACATCACTT
1 TGTATCGAT--A-CA--T
773327 ATGTATCGATACAT
1 -TGTATCGATACAT
*
773341 TATATCGATACAACACTT
1 TGTATCGAT---ACA--T
773359 ATGTATCGATACAT
1 -TGTATCGATACAT
773373 TGTATCGATACA
1 TGTATCGATACA
773385 ACACTTTATG
Statistics
Matches: 62, Mismatches: 2, Indels: 24
0.70 0.02 0.27
Matches are distributed among these distances:
13 29 0.47
14 2 0.03
15 1 0.02
16 10 0.16
17 1 0.02
18 2 0.03
19 17 0.27
ACGTcount: A:0.34, C:0.18, G:0.12, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:773316 original size:32 final size:32
Alignment explanation
Indices: 773275--773404 Score: 224
Period size: 32 Copynumber: 4.0 Consensus size: 32
773265 AGTAGCTTAA
*
773275 ATTGTATCGATACAAAACTTATGTATCGATAC
1 ATTGTATCGATACAACACTTATGTATCGATAC
*
773307 ATTGTATCGATACATCACTTATGTATCGATAC
1 ATTGTATCGATACAACACTTATGTATCGATAC
*
773339 ATTATATCGATACAACACTTATGTATCGATAC
1 ATTGTATCGATACAACACTTATGTATCGATAC
773371 ATTGTATCGATACAACACTTTATGTATCGATAC
1 ATTGTATCGATACAACAC-TTATGTATCGATAC
773404 A
1 A
773405 AATCGTTGAA
Statistics
Matches: 92, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
32 77 0.84
33 15 0.16
ACGTcount: A:0.35, C:0.18, G:0.12, T:0.35
Consensus pattern (32 bp):
ATTGTATCGATACAACACTTATGTATCGATAC
Found at i:774176 original size:20 final size:22
Alignment explanation
Indices: 774151--774195 Score: 58
Period size: 20 Copynumber: 2.1 Consensus size: 22
774141 GCAGCACCTA
*
774151 CCAGGTCGCGACCG-GCA-CCC
1 CCAGGTCGCAACCGAGCAGCCC
*
774171 CCAGGTTGCAACCGAGCAGCCC
1 CCAGGTCGCAACCGAGCAGCCC
774193 CCA
1 CCA
774196 CACTAGCAGC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 12 0.57
21 3 0.14
22 6 0.29
ACGTcount: A:0.20, C:0.47, G:0.27, T:0.07
Consensus pattern (22 bp):
CCAGGTCGCAACCGAGCAGCCC
Found at i:776211 original size:20 final size:21
Alignment explanation
Indices: 776186--776235 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
776176 GATACATTGC
**
776186 ATCGATACATGACCA-AATGT
1 ATCGATACATGAAAAGAATGT
*
776206 ATCGATACTTGAAAAGAATGT
1 ATCGATACATGAAAAGAATGT
776227 ATCGATACA
1 ATCGATACA
776236 GGTCATTGGC
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
20 12 0.48
21 13 0.52
ACGTcount: A:0.42, C:0.16, G:0.16, T:0.26
Consensus pattern (21 bp):
ATCGATACATGAAAAGAATGT
Found at i:776305 original size:13 final size:13
Alignment explanation
Indices: 776287--776314 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
776277 ACACATAATA
776287 TGTATCGATACAT
1 TGTATCGATACAT
776300 TGTATCGATACAT
1 TGTATCGATACAT
776313 TG
1 TG
776315 GCTTGTAACG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.14, G:0.18, T:0.39
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:778378 original size:51 final size:51
Alignment explanation
Indices: 778273--778391 Score: 147
Period size: 51 Copynumber: 2.4 Consensus size: 51
778263 TCATTTTTGA
*
778273 GGGGATACTTCAACCCT-TTTTTATTTTCAAAAAATCAAATTTTCACTATC
1 GGGGATACTTCAACCCTATTTTTACTTTCAAAAAATCAAATTTTCACTATC
* * *
778323 GGGGATA-TTCCAACCCTATTTTTACTTTCAAAATATTAAATTTT--TTATC
1 GGGGATACTT-CAACCCTATTTTTACTTTCAAAAAATCAAATTTTCACTATC
778372 TTGGGGATACTTCAACCCTA
1 --GGGGATACTTCAACCCTA
778392 CCATCTTCGA
Statistics
Matches: 60, Mismatches: 4, Indels: 9
0.82 0.05 0.12
Matches are distributed among these distances:
49 6 0.10
50 14 0.23
51 38 0.63
52 2 0.03
ACGTcount: A:0.30, C:0.19, G:0.10, T:0.40
Consensus pattern (51 bp):
GGGGATACTTCAACCCTATTTTTACTTTCAAAAAATCAAATTTTCACTATC
Found at i:781577 original size:13 final size:13
Alignment explanation
Indices: 781558--781596 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
781548 ACTATTTATG
781558 ATGTATCGATACA
1 ATGTATCGATACA
*
781571 CTGTATCGATACA
1 ATGTATCGATACA
781584 ATGTATCGATACA
1 ATGTATCGATACA
781597 TGAATAGTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.36, C:0.18, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:781674 original size:21 final size:22
Alignment explanation
Indices: 781645--781719 Score: 127
Period size: 21 Copynumber: 3.5 Consensus size: 22
781635 TAGTGATGCG
781645 TGAACAGTGATGTATCGATACA
1 TGAACAGTGATGTATCGATACA
*
781667 TGAA-AGTGATGTATCAATACA
1 TGAACAGTGATGTATCGATACA
781688 TGAA-AGTGATGTATCGATACA
1 TGAACAGTGATGTATCGATACA
781709 TGAACAGTGAT
1 TGAACAGTGAT
781720 AAATAGTGAT
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
21 40 0.80
22 10 0.20
ACGTcount: A:0.39, C:0.11, G:0.23, T:0.28
Consensus pattern (22 bp):
TGAACAGTGATGTATCGATACA
Found at i:781826 original size:53 final size:53
Alignment explanation
Indices: 781762--781898 Score: 238
Period size: 53 Copynumber: 2.6 Consensus size: 53
781752 CTACTACCAA
*
781762 TGTATCGATACATATTTTGTGTATCGATACAAATTTGGCTACTGCCAGTGACC
1 TGTATCGATACATATTTTGTGTATCGATACAAATTTGGCTACTGCCAATGACC
* *
781815 TGTATCGATACATATTGTGTGTATCGATACAAATTTGGCTACTGCCAATGTCC
1 TGTATCGATACATATTTTGTGTATCGATACAAATTTGGCTACTGCCAATGACC
781868 TGTATCGATACATATTTGTGTGTATCGATAC
1 TGTATCGATACATATTT-TGTGTATCGATAC
781899 TATGCAATCT
Statistics
Matches: 79, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
53 66 0.84
54 13 0.16
ACGTcount: A:0.26, C:0.18, G:0.19, T:0.37
Consensus pattern (53 bp):
TGTATCGATACATATTTTGTGTATCGATACAAATTTGGCTACTGCCAATGACC
Found at i:781934 original size:21 final size:20
Alignment explanation
Indices: 781886--781940 Score: 65
Period size: 21 Copynumber: 2.7 Consensus size: 20
781876 TACATATTTG
**
781886 TGTGTATCGATACTATGCAA
1 TGTGTATCGATACTATAAAA
* *
781906 TCTGTATCGATACATTTAAAA
1 TGTGTATCGATAC-TATAAAA
781927 TGTGTATCGATACT
1 TGTGTATCGATACT
781941 TTTCAGAGTT
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
20 13 0.45
21 16 0.55
ACGTcount: A:0.31, C:0.15, G:0.16, T:0.38
Consensus pattern (20 bp):
TGTGTATCGATACTATAAAA
Found at i:782005 original size:21 final size:21
Alignment explanation
Indices: 781979--782019 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
781969 GTCAACCTTG
781979 TGTATTAATACCAATA-GTATA
1 TGTATTAATA-CAATACGTATA
*
782000 TGTATTGATACAATACGTAT
1 TGTATTAATACAATACGTAT
782020 TTTTACTTAG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.39, C:0.10, G:0.12, T:0.39
Consensus pattern (21 bp):
TGTATTAATACAATACGTATA
Found at i:784905 original size:166 final size:166
Alignment explanation
Indices: 784579--785287 Score: 666
Period size: 166 Copynumber: 4.3 Consensus size: 166
784569 TTCCTCTCCG
* * * * **
784579 TAAATTTTTTTGAGAGGATTTTTCTT-GTTTTGAATTTTTAAAAT-TCATCAAATATTATTATTT
1 TAAATATTTTCGAGAGGATTTTTCTTGGTTTTAAATTTTTAAAATGT-ATCAAATATTATCATGG
* * * * * * * *
784642 AATTCATATAAAATTACTTTTTAAAAATTCATTCATTTTCATAAGTTTTTGAATTTTTTCCTTGA
65 AATTCATATTAAATCACTTTTTAAAATTTAATTCATTTTCATGAGTTTTGGATTTTTTTCTTTGA
* *
784707 AATTCTCCCA-TTTC-CAAAATA-CGAAGTTTTCTACTT-CG
130 AA---TCCCATTTTCTCAAAAAATCG-AGTTTTCTA-TTCCA
* * * * *
784745 TAAATTTTTTTGAGAGGATTTTTCTTGGTTTTTAATTTTTAAAAT-TCATCAAATATTATTATTT
1 TAAATATTTTCGAGAGGATTTTTCTTGGTTTTAAATTTTTAAAATGT-ATCAAATATTATCA-TG
784809 G-ATTCATATTAAAAT-A-TTTTTGAAAATTTAATTCATTTGT-ATGAGTTTTGGATTTTTTTCT
64 GAATTCATATT-AAATCACTTTTT-AAAATTTAATTCATTT-TCATGAGTTTTGGATTTTTTTCT
* *
784870 TTGAAGTCCCATTTTCTCAAAAAATTGAGTTTTCTATTCCA
126 TTGAAATCCCATTTTCTCAAAAAATCGAGTTTTCTATTCCA
* * * * *
784911 CAAATATTTTCGAGGGGATTTTT-TTTGTTCTAAAATTTTTCAAATGTATCAAATAATT-TCATG
1 TAAATATTTTCGAGAGGATTTTTCTTGGTT-TTAAATTTTTAAAATGTATCAAAT-ATTATCATG
*
784974 GAATTC-TCATTAAATCAGTTTTT-AAATGTTAATTCA-TTTCATGAGTTTTGGA-TTTTTTCTT
64 GAATTCAT-ATTAAATCACTTTTTAAAAT-TTAATTCATTTTCATGAGTTTTGGATTTTTTTCTT
* * *
785035 TGAAATCCCCTTTTTCCCAAAAAATTGAGTTTTCTATTCCA
127 TGAAAT-CCCATTTTCTCAAAAAATCGAGTTTTCTATTCCA
* * * * * * * *
785076 TGAATATTTCCG-GGGGAATTTTCTTTGG-TCTAAATTTTTTAAAATGTATCTAATAATGTCATG
1 TAAATATTTTCGAGAGGATTTTTC-TTGGTTTTAAA-TTTTTAAAATGTATCAAATATTATCATG
* * * *
785139 GAATTCCTACTAAATCAGTTTTGAAAATTTAATTCATTTTCATGAGTTTTGGATTTTTTTCTTTG
64 GAATTCATATTAAATCACTTTTTAAAATTTAATTCATTTTCATGAGTTTTGGATTTTTTTCTTTG
* *
785204 AAATCCCCTTTTCTCGAAAAATCGAGTTTTCTATTCCA
129 AAATCCCATTTTCTCAAAAAATCGAGTTTTCTATTCCA
* * *
785242 TAAATATTTTGGAGAGGA-TTTTCTTTGGTATAAAATTTTTAAAATG
1 TAAATATTTTCGAGAGGATTTTTC-TTGGTTTTAAATTTTTAAAATG
785288 CATATAATAT
Statistics
Matches: 465, Mismatches: 49, Indels: 58
0.81 0.09 0.10
Matches are distributed among these distances:
164 34 0.07
165 127 0.27
166 187 0.40
167 110 0.24
168 7 0.02
ACGTcount: A:0.30, C:0.11, G:0.11, T:0.48
Consensus pattern (166 bp):
TAAATATTTTCGAGAGGATTTTTCTTGGTTTTAAATTTTTAAAATGTATCAAATATTATCATGGA
ATTCATATTAAATCACTTTTTAAAATTTAATTCATTTTCATGAGTTTTGGATTTTTTTCTTTGAA
ATCCCATTTTCTCAAAAAATCGAGTTTTCTATTCCA
Found at i:785071 original size:165 final size:165
Alignment explanation
Indices: 784826--785287 Score: 662
Period size: 165 Copynumber: 2.8 Consensus size: 165
784816 ATTAAAATAT
* * *
784826 TTTTGAAAATTTAATTCATTTGTATGAGTTTTGGATTTTTTTCTTTGAAGTCCCATTTTCTCAAA
1 TTTTGAAAATTTAATTCATTT-CATGAGTTTTGGATTTTTTTCTTTGAAATCCCCTTTTCTCAAA
* * * *
784891 AAATTGAGTTTTCTATTCCACAAATATTTTCGAGGGGATTTTTTTTGTTCTAAAATTTTTCAAAT
65 AAATTGAGTTTTCTATTCCATAAATATTTTCGAGGGGATTTTCTTTGGTCTAAAATTTTTAAAAT
* *
784956 GTATCAAATAATTTCATGGAATT-CTCATTAAATCAG
130 GTATCAAATAATGTCATGGAATTCCT-ACTAAATCAG
* *
784992 TTTT-TAAATGTTAATTCATTTCATGAGTTTTGGA-TTTTTTCTTTGAAATCCCCTTTTTCCCAA
1 TTTTGAAAAT-TTAATTCATTTCATGAGTTTTGGATTTTTTTCTTTGAAATCCCC-TTTTCTCAA
* * *
785055 AAAATTGAGTTTTCTATTCCATGAATATTTCCG-GGGGAATTTTCTTTGGTCTAAATTTTTTAAA
64 AAAATTGAGTTTTCTATTCCATAAATATTTTCGAGGGG-ATTTTCTTTGGTCTAAAATTTTTAAA
*
785119 ATGTATCTAATAATGTCATGGAATTCCTACTAAATCAG
128 ATGTATCAAATAATGTCATGGAATTCCTACTAAATCAG
*
785157 TTTTGAAAATTTAATTCATTTTCATGAGTTTTGGATTTTTTTCTTTGAAATCCCCTTTTCTCGAA
1 TTTTGAAAATTTAATTCA-TTTCATGAGTTTTGGATTTTTTTCTTTGAAATCCCCTTTTCTCAAA
* * * *
785222 AAATCGAGTTTTCTATTCCATAAATATTTTGGAGAGGATTTTCTTTGGTATAAAATTTTTAAAAT
65 AAATTGAGTTTTCTATTCCATAAATATTTTCGAGGGGATTTTCTTTGGTCTAAAATTTTTAAAAT
785287 G
130 G
785288 CATATAATAT
Statistics
Matches: 263, Mismatches: 25, Indels: 16
0.87 0.08 0.05
Matches are distributed among these distances:
164 21 0.08
165 120 0.46
166 100 0.38
167 22 0.08
ACGTcount: A:0.29, C:0.12, G:0.13, T:0.47
Consensus pattern (165 bp):
TTTTGAAAATTTAATTCATTTCATGAGTTTTGGATTTTTTTCTTTGAAATCCCCTTTTCTCAAAA
AATTGAGTTTTCTATTCCATAAATATTTTCGAGGGGATTTTCTTTGGTCTAAAATTTTTAAAATG
TATCAAATAATGTCATGGAATTCCTACTAAATCAG
Found at i:785338 original size:166 final size:163
Alignment explanation
Indices: 784831--785343 Score: 606
Period size: 166 Copynumber: 3.1 Consensus size: 163
784821 AATATTTTTG
* *
784831 AAAATTTAATTCATTTGT-ATGAGTTTTGGATTTTTTTCTTTGAAGTCCCATTTTCTCAAAAAAT
1 AAAATTTAATTCATTT-TCATGAGTTTTGGATTTTTTTCTTTGAAATCCCCTTTTCTCAAAAAAT
* * * * *
784895 TGAGTTTTCTATTCCACAAATATTTTCGAGGGGATTTTTTTTGTTCTAAAATTTTTCAAATGTAT
65 TGAGTTTTCTATTCCATAAATATTTTGGA-GGGATTTTCTTTGGTCTAAAATTTTTAAAATGTAT
* * *
784960 CA-AATAATT-TCATGGAATTCTCATTAAATCAGTTTT
129 -ATAAT-ATTGTCATGGAA-TCCCTTTAAATCAGTTTA
* *
784996 TAAATGTTAATTCA-TTTCATGAGTTTTGGA-TTTTTTCTTTGAAATCCCCTTTTTCCCAAAAAA
1 AAAAT-TTAATTCATTTTCATGAGTTTTGGATTTTTTTCTTTGAAATCCCC-TTTTCTCAAAAAA
* * *
785059 TTGAGTTTTCTATTCCATGAATATTTCCGG-GGGAATTTTCTTTGGTCTAAATTTTTTAAAATGT
64 TTGAGTTTTCTATTCCATAAATATTT-TGGAGGG-ATTTTCTTTGGTCTAAAATTTTTAAAATGT
* * * * *
785123 ATCTAATAATGTCATGGAATTCCTACTAAATCAGTTTTG
127 ATATAATATTGTCATGGAATCCCT-TTAAATCAG-TTTA
* *
785162 AAAATTTAATTCATTTTCATGAGTTTTGGATTTTTTTCTTTGAAATCCCCTTTTCTCGAAAAATC
1 AAAATTTAATTCATTTTCATGAGTTTTGGATTTTTTTCTTTGAAATCCCCTTTTCTCAAAAAATT
* *
785227 GAGTTTTCTATTCCATAAATATTTTGGAGAGGATTTTCTTTGGTATAAAATTTTTAAAATGCATA
66 GAGTTTTCTATTCCATAAATATTTTGGAG-GGATTTTCTTTGGTCTAAAATTTTTAAAATGTATA
* * *
785292 TAATATTGTCATTGAACCCCTTTAATTCAGTTCTA
130 TAATATTGTCATGGAATCCCTTTAAATCAGTT-TA
*
785327 AAAATTTTAATTTATTT
1 AAAA-TTTAATTCATTT
785344 CATTAATTTT
Statistics
Matches: 296, Mismatches: 37, Indels: 29
0.82 0.10 0.08
Matches are distributed among these distances:
164 27 0.09
165 123 0.42
166 125 0.42
167 21 0.07
ACGTcount: A:0.29, C:0.12, G:0.12, T:0.46
Consensus pattern (163 bp):
AAAATTTAATTCATTTTCATGAGTTTTGGATTTTTTTCTTTGAAATCCCCTTTTCTCAAAAAATT
GAGTTTTCTATTCCATAAATATTTTGGAGGGATTTTCTTTGGTCTAAAATTTTTAAAATGTATAT
AATATTGTCATGGAATCCCTTTAAATCAGTTTA
Found at i:785858 original size:18 final size:18
Alignment explanation
Indices: 785835--785869 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
785825 AAGAGAGAGA
*
785835 AAAAAAGGGAAAAAAAGC
1 AAAAAAGAGAAAAAAAGC
*
785853 AAAAAAGAGAGAAAAAG
1 AAAAAAGAGAAAAAAAG
785870 AGAAATCTAG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.74, C:0.03, G:0.23, T:0.00
Consensus pattern (18 bp):
AAAAAAGAGAAAAAAAGC
Found at i:787820 original size:147 final size:148
Alignment explanation
Indices: 787453--787975 Score: 408
Period size: 153 Copynumber: 3.5 Consensus size: 148
787443 TTTTATCATG
* * * **
787453 CTTTTTAAGTCCTTTAAAGGTATGGGGTACTTCTACGTCGAAGGTATCCCCTAGGAGCATTTTCA
1 CTTTTTAAGTCCTTT-AGGGTAT-CGGTACTTCTACGTCGAAGGTATCCCCTAGGGGCATTTTTG
* * * * *
787518 TAATTTTTTAGAACTAACTACTAGGTTGTCACCGAGTCCGTTTTTATGCCAAAGGTGGGCATTTA
64 TAATTTTCTAGAACCAACTACTAGGTTGTCACCGAGTCCGTCTTTATGCCAAAGATGGGCACTTA
* *
787583 GGATAGGTTATTCTATCTTCATC
129 -G--AGGTTATTCTATCTTAAAC
* * * * * ** *
787606 CTTTTAAAGTCCTTTAGAGGTATCGAATACTTTTACGTCAAAGGTGTCCCCTATAGGTATTTTTG
1 CTTTTTAAGTCCTTTAG-GGTATCG-GTACTTCTACGTCGAAGGTATCCCCTAGGGGCATTTTTG
* * *
787671 TAATTTTCTAGAGCCAACT-CTTAGGTTGTCACTGGGTCCG-CTTTATGCCAAAGATGGGCACTT
64 TAATTTTCTAGAACCAACTAC-TAGGTTGTCACCGAGTCCGTCTTTATGCCAAAGATGGGCACTT
* *
787734 -G-GGTTCATTTTGTCTTAAAC
128 AGAGGTT-ATTCTATCTTAAAC
* *
787754 CTTTTTAAGTCCTTTAGGGTATCAGGTACATCTATGTCGAAGGTATCCCCTAGGGGCATTTTTGT
1 CTTTTTAAGTCCTTTAGGGTATC-GGTACTTCTACGTCGAAGGTATCCCCTAGGGGCATTTTTGT
* * ** * * *
787819 AATTTT-TCAAAACCAACTTCTAGGTTGTCTTCGAAT-C-TACTATTATGCCAAA-AGTGAGCAT
65 AATTTTCT-AGAACCAACTACTAGGTTGTCACCGAGTCCGT-CT-TTATGCCAAAGA-TGGGCAC
*
787880 TTAAGATAGGTT-TATCTCGTCTTAAAC
126 TT-AG--AGGTTAT-TCT-ATCTTAAAC
*
787907 CTTTTT--GTCCTTTAGAGGTATCAGGTACTTCTAAG-CTGAA-GTATCCCCTTA-GGGCATTTT
1 CTTTTTAAGTCCTTTAG-GGTATC-GGTACTTCTACGTC-GAAGGTATCCCC-TAGGGGCATTTT
*
787967 CGTAATTTT
62 TGTAATTTT
787976 TATACAAAAC
Statistics
Matches: 301, Mismatches: 48, Indels: 44
0.77 0.12 0.11
Matches are distributed among these distances:
146 2 0.01
147 69 0.23
148 45 0.15
150 2 0.01
151 36 0.12
152 47 0.16
153 100 0.33
ACGTcount: A:0.24, C:0.19, G:0.19, T:0.38
Consensus pattern (148 bp):
CTTTTTAAGTCCTTTAGGGTATCGGTACTTCTACGTCGAAGGTATCCCCTAGGGGCATTTTTGTA
ATTTTCTAGAACCAACTACTAGGTTGTCACCGAGTCCGTCTTTATGCCAAAGATGGGCACTTAGA
GGTTATTCTATCTTAAAC
Found at i:792384 original size:52 final size:52
Alignment explanation
Indices: 792309--792486 Score: 320
Period size: 52 Copynumber: 3.4 Consensus size: 52
792299 ATTATGAAAT
*
792309 TTTGCCTGCATGTATCGATACATTTAATAGTGTATCGATACATCTAGGCAAA
1 TTTGCCTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAA
*
792361 TTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGCAAA
1 TTTGCCTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAA
* *
792413 TTTGCTTGCATGTATCGATACATTTTATAGTGTATCGATACATCTGGGCAAA
1 TTTGCCTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAA
792465 TTTGCCTGCATGTATCGATACA
1 TTTGCCTGCATGTATCGATACA
792487 AAGATCAGTG
Statistics
Matches: 121, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 121 1.00
ACGTcount: A:0.28, C:0.18, G:0.19, T:0.36
Consensus pattern (52 bp):
TTTGCCTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAA
Found at i:792497 original size:52 final size:51
Alignment explanation
Indices: 792309--792506 Score: 299
Period size: 52 Copynumber: 3.8 Consensus size: 51
792299 ATTATGAAAT
*
792309 TTTGCCTGCATGTATCGATACATTTAATAGTGTATCGATACATCTAGGCAAA
1 TTTGCCTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTGGGCAAA
*
792361 TTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGCAAA
1 TTTGCCTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTGGGCAAA
* *
792413 TTTGCTTGCATGTATCGATACATTTTATAGTGTATCGATACATCTGGGCAAA
1 TTTGCCTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTGGGCAAA
*
792465 TTTGCCTGCATGTATCGATACA-AAGATCAGTGTATCGATACA
1 TTTGCCTGCATGTATCGATACATTA-AT-AGTGTATCGATACA
792507 ATGTATCGAT
Statistics
Matches: 137, Mismatches: 7, Indels: 4
0.93 0.05 0.03
Matches are distributed among these distances:
51 2 0.01
52 135 0.99
ACGTcount: A:0.29, C:0.18, G:0.19, T:0.35
Consensus pattern (51 bp):
TTTGCCTGCATGTATCGATACATTAATAGTGTATCGATACATCTGGGCAAA
Found at i:792513 original size:13 final size:13
Alignment explanation
Indices: 792495--792519 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
792485 CAAAGATCAG
792495 TGTATCGATACAA
1 TGTATCGATACAA
792508 TGTATCGATACA
1 TGTATCGATACA
792520 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:792588 original size:19 final size:20
Alignment explanation
Indices: 792564--792614 Score: 86
Period size: 20 Copynumber: 2.6 Consensus size: 20
792554 GCTTAAATTT
792564 TATCGATACAAAAC-TTATG
1 TATCGATACAAAACTTTATG
*
792583 TATCGATACAACACTTTATG
1 TATCGATACAAAACTTTATG
792603 TATCGATACAAA
1 TATCGATACAAA
792615 TCGTTGAAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
19 13 0.45
20 16 0.55
ACGTcount: A:0.41, C:0.18, G:0.10, T:0.31
Consensus pattern (20 bp):
TATCGATACAAAACTTTATG
Found at i:795205 original size:20 final size:21
Alignment explanation
Indices: 795182--795234 Score: 72
Period size: 20 Copynumber: 2.6 Consensus size: 21
795172 ATTTCAGGCA
795182 TGTATTGATACATTCACT-TT
1 TGTATTGATACATTCACTGTT
* *
795202 TGTATCGATACATTTACTGTT
1 TGTATTGATACATTCACTGTT
*
795223 TGTATTAATACA
1 TGTATTGATACA
795235 AATTGTAAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
20 16 0.57
21 12 0.43
ACGTcount: A:0.28, C:0.13, G:0.11, T:0.47
Consensus pattern (21 bp):
TGTATTGATACATTCACTGTT
Found at i:796071 original size:21 final size:19
Alignment explanation
Indices: 796031--796073 Score: 59
Period size: 21 Copynumber: 2.2 Consensus size: 19
796021 AGTTTACAGA
796031 TTTTGATGATTTATTTGAT
1 TTTTGATGATTTATTTGAT
*
796050 TTTTGTTGTATTTATGTTGAT
1 TTTTGATG-ATTTAT-TTGAT
796071 TTT
1 TTT
796074 CATTATGGTG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 7 0.33
20 6 0.29
21 8 0.38
ACGTcount: A:0.16, C:0.00, G:0.16, T:0.67
Consensus pattern (19 bp):
TTTTGATGATTTATTTGAT
Found at i:797300 original size:158 final size:157
Alignment explanation
Indices: 796690--797320 Score: 651
Period size: 157 Copynumber: 4.0 Consensus size: 157
796680 AATTTGTAAA
* * *** * * *
796690 TATT-AAAAATTTTGTTCCAAGCCCAAAAGTACTTGGAAAAATCTTTCTTGTAATTTTTGGATTT
1 TATTCAAAAATTTTGTTCTAAGGCCAAAAGTACTTGGCTGAATCTTCCTTGTAACTTTTGGATGT
* * * * * * * * * *
796754 GATTTT-TGTGTTGATTTTGATATGTTTGATATTGAACTTTGTGTTTTATTTATATAGGGACCAA
66 G-TTTTGTATGTTGATTTTGATTTCTTTGATGTTTAATTTTGTGTTTTAATTATGTAAGGACTAA
* *
796818 TTTGCAAATTTAGAAAGTTTAGGGGGTT
130 TTTGTAAATTTAGAAAGTTTAAGGGGTT
* ** *
796846 CATTTGAAAATTTTGTTCTAAGGCC-AAAGATACTTGGCCGAATCTTCCTTGTAACTTTTGGATG
1 TATTCAAAAATTTTGTTCTAAGGCCAAAAG-TACTTGGCTGAATCTTCCTTGTAACTTTTGGATG
* * ** ** *
796910 TATTTTGGATGCCGATTTCCATTTCTTTGATGCTTAATTTTGTGTTTTAATTATGTAAGGACTAA
65 TGTTTTGTATGTTGATTTTGATTTCTTTGATGTTTAATTTTGTGTTTTAATTATGTAAGGACTAA
* * **
796975 TTTGTAAATTCAAAAAGTTTTGGGGGTT
130 TTTGTAAATTTAGAAAGTTTAAGGGGTT
* * * * * * * *
797003 TATTCAAGAATTTTATTTTAGGGCCAAAAGTACTTGGTTGAACCTCCCTTGTAACTTTTGGATAT
1 TATTCAAAAATTTTGTTCTAAGGCCAAAAGTACTTGGCTGAATCTTCCTTGTAACTTTTGGATGT
* * *
797068 GTTTTGTATGTTGATTTTGATTCCTTGGATGTTTAATTTTGTGTTTTAATTATATAAGGACTAAT
66 GTTTTGTATGTTGATTTTGATTTCTTTGATGTTTAATTTTGTGTTTTAATTATGTAAGGACTAAT
* * *
797133 TTGCAAAATTAGAAAGTTTAATGGGTT
131 TTGTAAATTTAGAAAGTTTAAGGGGTT
* *
797160 TATTCAAAAATTTTGTTCTAAGGCTAAAAGTACTTAGCTGAATCTTCCTTGTAACTTTTTGGATG
1 TATTCAAAAATTTTGTTCTAAGGCCAAAAGTACTTGGCTGAATCTTCCTTGTAAC-TTTTGGATG
* * * * * **
797225 TGCTTTATATTTTGATTTTGATTTCTTCGATGTTTAATTTTGTGTTTTAATTAGGTTCGAGACCT
65 TGTTTTGTATGTTGATTTTGATTTCTTTGATGTTTAATTTTGTGTTTTAATTATGTAAG-GA-CT
*
797290 -TTTTGTAAATTTAGAAAGTTTAA-GGGTT
128 AATTTGTAAATTTAGAAAGTTTAAGGGGTT
797318 TAT
1 TAT
797321 CTGTAAATAT
Statistics
Matches: 386, Mismatches: 82, Indels: 12
0.80 0.17 0.03
Matches are distributed among these distances:
156 11 0.03
157 281 0.73
158 70 0.18
159 22 0.06
160 2 0.01
ACGTcount: A:0.27, C:0.10, G:0.18, T:0.46
Consensus pattern (157 bp):
TATTCAAAAATTTTGTTCTAAGGCCAAAAGTACTTGGCTGAATCTTCCTTGTAACTTTTGGATGT
GTTTTGTATGTTGATTTTGATTTCTTTGATGTTTAATTTTGTGTTTTAATTATGTAAGGACTAAT
TTGTAAATTTAGAAAGTTTAAGGGGTT
Found at i:798314 original size:158 final size:156
Alignment explanation
Indices: 797948--798363 Score: 471
Period size: 158 Copynumber: 2.6 Consensus size: 156
797938 CATAGGGGTT
* * * * * *
797948 TTTTGGTAATTTTTCTAGAATTGGGTCCTAAATTGTCACCGAGATGATTTTATGCCAAAGATAGG
1 TTTTCGTAATTTTTCTAGAATCGAGTCCTAGATTGTCA-CGAAATGATTTTATGCCAAAGATGGG
* * *
798013 TATTTAAGATAGGTTCATCCCATTTATGATCCTTTTTAAGTCTTTTAGGGTTATCGAGATACCTT
65 TATTTAGGATAGGTTCATCCCATTTATGATCCTTTTTAAGTCTTTTAGGGTTACCAAGATACCTT
* * * *
798078 CATGTTGAAAATATACCTATAGAGGCA
130 CATGTTCAAAATATACCCAGAGAAGCA
* * * * *
798105 TTTTCGTAATTTTTCTAGAA-CGTAGTCCTAGGTTGTCACCAAGATGCTTTTATGTCAAAGGTGG
1 TTTTCGTAATTTTTCTAGAATCG-AGTCCTAGATTGTCACGAA-ATGATTTTATGCCAAAGATGG
* * **
798169 GTATTTTGGATAGGTTCATCCCATTTATGATCTTTTTTAAGTCTTTTTAGGGTTACCAAGATATT
64 GTATTTAGGATAGGTTCATCCCATTTATGATCCTTTTTAAGTC-TTTTAGGGTTACCAAGATACC
*
798234 TTCATG-TCAAAAGTATACCCACGA-AAGTA
128 TTCATGTTCAAAA-TATACCCA-GAGAAGCA
** * *
798263 TTTTCGTAATTTTTCTAGAATCGAGTCCTAGATAATCATCGAAATGTTTTTATGCCAAAGATGTG
1 TTTTCGTAATTTTTCTAGAATCGAGTCCTAGATTGTCA-CGAAATGATTTTATGCCAAAGATGGG
* *
798328 TATTTAGGATAAGTTCA-CCTCATTTATGATCGTTTT
65 TATTTAGGATAGGTTCATCC-CATTTATGATCCTTTT
798364 AAGGACCATT
Statistics
Matches: 217, Mismatches: 34, Indels: 15
0.82 0.13 0.06
Matches are distributed among these distances:
156 3 0.01
157 95 0.44
158 113 0.52
159 6 0.03
ACGTcount: A:0.28, C:0.14, G:0.18, T:0.40
Consensus pattern (156 bp):
TTTTCGTAATTTTTCTAGAATCGAGTCCTAGATTGTCACGAAATGATTTTATGCCAAAGATGGGT
ATTTAGGATAGGTTCATCCCATTTATGATCCTTTTTAAGTCTTTTAGGGTTACCAAGATACCTTC
ATGTTCAAAATATACCCAGAGAAGCA
Found at i:802005 original size:17 final size:17
Alignment explanation
Indices: 801964--802007 Score: 54
Period size: 17 Copynumber: 2.6 Consensus size: 17
801954 ATTTTTGTCT
* *
801964 TAAATAAATATTTATGC
1 TAAATAAATATATATCC
801981 -AAATTAAATATATATCC
1 TAAA-TAAATATATATCC
801998 TAAATAAATA
1 TAAATAAATA
802008 ATACAAAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
16 3 0.13
17 17 0.74
18 3 0.13
ACGTcount: A:0.55, C:0.07, G:0.02, T:0.36
Consensus pattern (17 bp):
TAAATAAATATATATCC
Found at i:804214 original size:31 final size:31
Alignment explanation
Indices: 804161--804232 Score: 83
Period size: 31 Copynumber: 2.3 Consensus size: 31
804151 TAAATTTACT
* *
804161 TACTTTTATTGCAATTCAAATTTATGTAATG
1 TACTTTTATTGAAATTCAAATTTATGCAATG
* *
804192 TACTTTTATTGAAAATTC-AATTTGTGCAATT
1 TACTTTTATTG-AAATTCAAATTTATGCAATG
*
804223 TTCTTTTATT
1 TACTTTTATT
804233 ATTGCAATTT
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
31 30 0.86
32 5 0.14
ACGTcount: A:0.29, C:0.10, G:0.08, T:0.53
Consensus pattern (31 bp):
TACTTTTATTGAAATTCAAATTTATGCAATG
Found at i:804411 original size:31 final size:31
Alignment explanation
Indices: 804359--804430 Score: 83
Period size: 31 Copynumber: 2.3 Consensus size: 31
804349 TAAATTTACT
* *
804359 TACTTTTATTGCAATTCAAATTTATGTAATG
1 TACTTTTATTGAAATTCAAATTTATGCAATG
* *
804390 TACTTTTATTGAAAATT-AAATTTGTGCAATT
1 TACTTTTATTG-AAATTCAAATTTATGCAATG
*
804421 TTCTTTTATT
1 TACTTTTATT
804431 ATTGCAATTT
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
31 31 0.89
32 4 0.11
ACGTcount: A:0.31, C:0.08, G:0.08, T:0.53
Consensus pattern (31 bp):
TACTTTTATTGAAATTCAAATTTATGCAATG
Found at i:804467 original size:198 final size:197
Alignment explanation
Indices: 804115--804498 Score: 732
Period size: 198 Copynumber: 1.9 Consensus size: 197
804105 CCAGCAAAAA
*
804115 CAAAAAAAGAATAAAAAAAAAGAAAAATGTTGCCATTAAATTTACTTACTTTTATTGCAATTCAA
1 CAAAAAAAGAAAAAAAAAAAAGAAAAATGTTGCCATTAAATTTACTTACTTTTATTGCAATTCAA
*
804180 ATTTATGTAATGTACTTTTATTGAAAATTCAATTTGTGCAATTTTCTTTTATTATTGCAATTTTA
66 ATTTATGTAATGTACTTTTATTGAAAATTAAATTTGTGCAATTTTCTTTTATTATTGCAATTTTA
804245 ATATATGCAATTTACTTTATTTGTATCTTTATTCTTTGTTATTTCATTTATTTACTCCTAGCAAG
131 ATATATGCAATTTACTTTATTTGTATCTTTATTCTTTGTTATTTCATTTATTTACTCCTAGCAAG
804310 AG
196 AG
*
804312 CAAAAAAATAAAAATAAAAAAAGAAAAATGTTGCCATTAAATTTACTTACTTTTATTGCAATTCA
1 CAAAAAAAGAAAAA-AAAAAAAGAAAAATGTTGCCATTAAATTTACTTACTTTTATTGCAATTCA
804377 AATTTATGTAATGTACTTTTATTGAAAATTAAATTTGTGCAATTTTCTTTTATTATTGCAATTTT
65 AATTTATGTAATGTACTTTTATTGAAAATTAAATTTGTGCAATTTTCTTTTATTATTGCAATTTT
804442 AATATATGCAATTTACTTTATTTGTATCTTTATTCTTTGTTATTTCATTTATTTACT
130 AATATATGCAATTTACTTTATTTGTATCTTTATTCTTTGTTATTTCATTTATTTACT
804499 TCATTTTATG
Statistics
Matches: 183, Mismatches: 3, Indels: 1
0.98 0.02 0.01
Matches are distributed among these distances:
197 12 0.07
198 171 0.93
ACGTcount: A:0.36, C:0.10, G:0.08, T:0.46
Consensus pattern (197 bp):
CAAAAAAAGAAAAAAAAAAAAGAAAAATGTTGCCATTAAATTTACTTACTTTTATTGCAATTCAA
ATTTATGTAATGTACTTTTATTGAAAATTAAATTTGTGCAATTTTCTTTTATTATTGCAATTTTA
ATATATGCAATTTACTTTATTTGTATCTTTATTCTTTGTTATTTCATTTATTTACTCCTAGCAAG
AG
Found at i:804521 original size:28 final size:26
Alignment explanation
Indices: 804490--804554 Score: 69
Period size: 28 Copynumber: 2.3 Consensus size: 26
804480 GTTATTTCAT
804490 TTATT-TACTTCATTTTATGTTGGTTATA
1 TTATTATA-TTCATTTTATGTT--TTATA
*
804518 TTATTATATTTATTTTATGTTTTATA
1 TTATTATATTCATTTTATGTTTTATA
804544 TTGATGTATAT
1 TT-AT-TATAT
804555 ATATGTATGC
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
26 7 0.21
27 2 0.06
28 22 0.67
29 2 0.06
ACGTcount: A:0.25, C:0.03, G:0.09, T:0.63
Consensus pattern (26 bp):
TTATTATATTCATTTTATGTTTTATA
Found at i:805123 original size:78 final size:79
Alignment explanation
Indices: 805012--805198 Score: 218
Period size: 79 Copynumber: 2.4 Consensus size: 79
805002 TGTAGAAATT
* * * *
805012 TCCATTAAGATTATTTTTAGTAATTTTCACATGAAAACTAAGTCTTTAGGGT-ATGTTAGCATTT
1 TCCATTAAGGTCA-TTTTAGTAATTTTTACATGAAAACTAAGTCCTTAGGGTAATGTTAGCATTT
805076 CCATATCAAAACATG
65 CCATATCAAAACATG
* * ** * *
805091 TCCATTAAGGTCATTTTAGTAATTTTTACATGACAATTGGGTCCTTAGGTTAATGTTAGCATTTT
1 TCCATTAAGGTCATTTTAGTAATTTTTACATGAAAACTAAGTCCTTAGGGTAATGTTAGCATTTC
*
805156 CATATCAAAATATG
66 CATATCAAAACATG
* *
805170 TCCACT-AGGATCATTTT-GTTATTTTTACA
1 TCCATTAAGG-TCATTTTAGTAATTTTTACA
805199 CTAAAATTGG
Statistics
Matches: 93, Mismatches: 13, Indels: 5
0.84 0.12 0.05
Matches are distributed among these distances:
78 45 0.48
79 48 0.52
ACGTcount: A:0.31, C:0.14, G:0.13, T:0.42
Consensus pattern (79 bp):
TCCATTAAGGTCATTTTAGTAATTTTTACATGAAAACTAAGTCCTTAGGGTAATGTTAGCATTTC
CATATCAAAACATG
Found at i:805235 original size:78 final size:78
Alignment explanation
Indices: 805026--805243 Score: 239
Period size: 78 Copynumber: 2.8 Consensus size: 78
805016 TTAAGATTAT
* * **
805026 TTTTAGTAATTTTCACATGAAAACTAAGTCTTTAGGG-TATGTTAGCATTTCCATATCAAAACAT
1 TTTTAGTAATTTTTACATGAAAATTGGGTCTTTAGGGTTATGTTAGCATTT-CATATCAAAACAT
*
805090 GTCCATTAAGGTCA
65 GTCCACTAAGGTCA
* * *
805104 TTTTAGTAATTTTTACATGACAATTGGGTCCTTA-GGTTAATGTTAGCATTTTCATATCAAAATA
1 TTTTAGTAATTTTTACATGAAAATTGGGTCTTTAGGGTT-ATGTTAGCA-TTTCATATCAAAACA
805168 TGTCCACT-AGGATCA
64 TGTCCACTAAGG-TCA
* * * *
805183 TTTT-GTTATTTTTACACT-AAAATTGGGTTTTTAGGGTTGTGTTAGCACTTTCATAGCAAAA
1 TTTTAGTAATTTTTACA-TGAAAATTGGGTCTTTAGGGTTATGTTAGCA-TTTCATATCAAAA
805244 ATCAAACCTT
Statistics
Matches: 119, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
77 2 0.02
78 75 0.63
79 39 0.33
80 3 0.03
ACGTcount: A:0.30, C:0.13, G:0.16, T:0.41
Consensus pattern (78 bp):
TTTTAGTAATTTTTACATGAAAATTGGGTCTTTAGGGTTATGTTAGCATTTCATATCAAAACATG
TCCACTAAGGTCA
Found at i:807063 original size:22 final size:20
Alignment explanation
Indices: 807038--807089 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 20
807028 TGGCATTGAG
807038 GTATCGATACCTTATCATTAAA
1 GTATCGATACC-T-TCATTAAA
* *
807060 GTATCAATACCTTCCTTAAA
1 GTATCGATACCTTCATTAAA
*
807080 GTATTGATAC
1 GTATCGATAC
807090 ATTGGTACAA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
20 15 0.58
21 1 0.04
22 10 0.38
ACGTcount: A:0.35, C:0.19, G:0.10, T:0.37
Consensus pattern (20 bp):
GTATCGATACCTTCATTAAA
Found at i:807278 original size:13 final size:14
Alignment explanation
Indices: 807258--807290 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
807248 ATCTTTGATT
*
807258 AACTTTTCAAATTA
1 AACTTTCCAAATTA
807272 AACTTTCCAAATTA
1 AACTTTCCAAATTA
807286 AACTT
1 AACTT
807291 CAATCATAGA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.42, C:0.18, G:0.00, T:0.39
Consensus pattern (14 bp):
AACTTTCCAAATTA
Found at i:808606 original size:15 final size:15
Alignment explanation
Indices: 808588--808658 Score: 54
Period size: 15 Copynumber: 4.7 Consensus size: 15
808578 CATGTATCTT
808588 ATTTAATTTATTGCA
1 ATTTAATTTATTGCA
* * *
808603 ATTTATTTTCTTGTA
1 ATTTAATTTATTGCA
808618 ATTTAAATTTA-TGCA
1 ATTT-AATTTATTGCA
** * *
808633 CGTTATTTTCTTGCA
1 ATTTAATTTATTGCA
808648 ATTTAAATTTA
1 ATTT-AATTTA
808659 AACACTCTAC
Statistics
Matches: 39, Mismatches: 14, Indels: 5
0.67 0.24 0.09
Matches are distributed among these distances:
14 4 0.10
15 27 0.69
16 8 0.21
ACGTcount: A:0.30, C:0.08, G:0.07, T:0.55
Consensus pattern (15 bp):
ATTTAATTTATTGCA
Found at i:808622 original size:30 final size:30
Alignment explanation
Indices: 808588--808658 Score: 99
Period size: 30 Copynumber: 2.4 Consensus size: 30
808578 CATGTATCTT
* *
808588 ATTT-AATTTATTGCAATTTATTTTCTTGTA
1 ATTTAAATTTA-TGCAAGTTATTTTCTTGCA
*
808618 ATTTAAATTTATGCACGTTATTTTCTTGCA
1 ATTTAAATTTATGCAAGTTATTTTCTTGCA
808648 ATTTAAATTTA
1 ATTTAAATTTA
808659 AACACTCTAC
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
30 31 0.84
31 6 0.16
ACGTcount: A:0.30, C:0.08, G:0.07, T:0.55
Consensus pattern (30 bp):
ATTTAAATTTATGCAAGTTATTTTCTTGCA
Found at i:809402 original size:78 final size:78
Alignment explanation
Indices: 809320--809488 Score: 200
Period size: 77 Copynumber: 2.2 Consensus size: 78
809310 TAGCACTGCT
* * * * *
809320 ATGTCAAAATTGAACTTTTAGAGCCATTTTGGTACTTTTATGTC-TTTTCTAAACCTTTAAGG-T
1 ATGTCAAAATTGAAC-CTTAGAGCCATTTTAGTAATTTTATATCATTTTC-AAACCTTTAGGGCT
809383 CATGTTTAGCA-TTTC
64 -ATGTTTAGCACTTTC
** *
809398 ATGTCAAAATTGAACCTTAGAGGTATTTTAGTAATTTTATATCATTTTCAAACCTTTAGGGCTGT
1 ATGTCAAAATTGAACCTTAGAGCCATTTTAGTAATTTTATATCATTTTCAAACCTTTAGGGCTAT
809463 GTTTAGCACTTTC
66 GTTTAGCACTTTC
* *
809476 ATATCAGAATTGA
1 ATGTCAAAATTGA
809489 GCCGTATGGG
Statistics
Matches: 78, Mismatches: 10, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
77 42 0.54
78 36 0.46
ACGTcount: A:0.28, C:0.14, G:0.15, T:0.43
Consensus pattern (78 bp):
ATGTCAAAATTGAACCTTAGAGCCATTTTAGTAATTTTATATCATTTTCAAACCTTTAGGGCTAT
GTTTAGCACTTTC
Found at i:809451 original size:77 final size:79
Alignment explanation
Indices: 809320--809523 Score: 220
Period size: 78 Copynumber: 2.6 Consensus size: 79
809310 TAGCACTGCT
* ** * * *
809320 ATGTCAAAATTGAACTTTTAGAGCCATTTTGGTACTTTTATGTC-TTTTCTAAACCTTTAAGG-T
1 ATGTCAAAATTGAAC-CTTAGAGGTATTTTAGTACTTTTATATCATTTTCTAAACCTTTAGGGCT
809383 CATGTTTAGCA-TTTC
65 -ATGTTTAGCACTTTC
* *
809398 ATGTCAAAATTGAACCTTAGAGGTATTTTAGTAATTTTATATCATTTTC-AAACCTTTAGGGCTG
1 ATGTCAAAATTGAACCTTAGAGGTATTTTAGTACTTTTATATCATTTTCTAAACCTTTAGGGCTA
809462 TGTTTAGCACTTTC
66 TGTTTAGCACTTTC
* * * * * *
809476 ATATCAGAATTGAGCCGTATG-GGTGTTTTAATACTTTTATATCATTTT
1 ATGTCAAAATTGAACCTTA-GAGGTATTTTAGTACTTTTATATCATTTT
809524 TGAGTCTTTT
Statistics
Matches: 107, Mismatches: 15, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
77 42 0.39
78 64 0.60
79 1 0.01
ACGTcount: A:0.27, C:0.14, G:0.15, T:0.44
Consensus pattern (79 bp):
ATGTCAAAATTGAACCTTAGAGGTATTTTAGTACTTTTATATCATTTTCTAAACCTTTAGGGCTA
TGTTTAGCACTTTC
Found at i:812625 original size:24 final size:24
Alignment explanation
Indices: 812593--812640 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
812583 ATAGAAACAT
812593 GATTGCTATATGGAGAGTATAGGG
1 GATTGCTATATGGAGAGTATAGGG
812617 GATTGCTATATGGAGAGTATAGGG
1 GATTGCTATATGGAGAGTATAGGG
812641 CTTAGACGTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.29, C:0.04, G:0.38, T:0.29
Consensus pattern (24 bp):
GATTGCTATATGGAGAGTATAGGG
Found at i:813318 original size:32 final size:32
Alignment explanation
Indices: 813272--813338 Score: 125
Period size: 32 Copynumber: 2.1 Consensus size: 32
813262 GTATGATATG
*
813272 AAGCGTATTGAAGATGGATAAGTGGTTCAAAA
1 AAGCATATTGAAGATGGATAAGTGGTTCAAAA
813304 AAGCATATTGAAGATGGATAAGTGGTTCAAAA
1 AAGCATATTGAAGATGGATAAGTGGTTCAAAA
813336 AAG
1 AAG
813339 ATTTATCACC
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.43, C:0.06, G:0.27, T:0.24
Consensus pattern (32 bp):
AAGCATATTGAAGATGGATAAGTGGTTCAAAA
Found at i:816310 original size:28 final size:27
Alignment explanation
Indices: 816265--816324 Score: 75
Period size: 28 Copynumber: 2.2 Consensus size: 27
816255 TTTTCTTTGA
* * * *
816265 TTTTATTTATATATTATGTAATTAGTTT
1 TTTTATTGAAATACTATGTAATT-GATT
816293 TTTTATTGAAATACTATGTAATTGATT
1 TTTTATTGAAATACTATGTAATTGATT
816320 TTTTA
1 TTTTA
816325 AATGAAACTA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
27 8 0.29
28 20 0.71
ACGTcount: A:0.30, C:0.02, G:0.08, T:0.60
Consensus pattern (27 bp):
TTTTATTGAAATACTATGTAATTGATT
Found at i:820519 original size:277 final size:282
Alignment explanation
Indices: 820003--820565 Score: 868
Period size: 277 Copynumber: 2.0 Consensus size: 282
819993 GATTTTAGAT
* * *
820003 TCTTTTAATGTTTGAAGTGTATTGAGAGTGTATGAGGAATGGAAACCGAAAGATCCTCTGCTGAG
1 TCTTTTAATGTTTAAAGTATATTAAGAGTGTATGAGGAATGGAAACCGAAAGATCCTCTGCTGAG
* * *
820068 ATCAAAAAGTGCTTTTTATAGGCAATATTTTAGAGTCAAATATGAGAGTATTTGAGACATTTCCC
66 ATCAAAAAGTGCTTTTTATAGACAACATTTTAGAGTCAAAGATGAGAGTATTTGAGACATTTCCC
*
820133 TTTCAATATTAAATGATGAGCTTGCTGGCAGAAATGGCTAAGTAAGGTGGCTGAAATTAAATGCT
131 TTTCAATATT-AA-GA-GA-CTTGCTGGCAGAAATGGCTAAGTAAGGTGGCTAAAATTAAATGCT
* *
820198 ATGGTGGTTGGCCAAAGCTTAGGAGGAAGATAGGGTGGCTGGAGTAAATGCTCAGCAACCAATGG
192 ATGGTGGCTGGCCAAAGCTTAGGAGGAAGATAGGGTGGCTGGAGTAAATGCTCAGCAACCAATGA
820263 TGACAATGAGTTCCATCAGCCATTTC
257 TGACAATGAGTTCCATCAGCCATTTC
* * *
820289 TCTTTTAATGTTTAAAGTATATTAAGAGTGTATGAGGAATGGAAGCCGAAATA-CCTTTGCTGAG
1 TCTTTTAATGTTTAAAGTATATTAAGAGTGTATGAGGAATGGAAACCGAAAGATCCTCTGCTGAG
* *
820353 ATCAAAAAGTGTTTTTTATAGACAACATTTTAGAGTCAAAGATGACG-GTATTTGAGATATTTCC
66 ATCAAAAAGTGCTTTTTATAGACAACATTTTAGAGTCAAAGATGA-GAGTATTTGAGACATTTCC
* *
820417 CTTTCAATATT-A-A-A-TTGCTGGCAGATATGGCTGAGTAAGGTGGCTAAAATTAAATGCTATG
130 CTTTCAATATTAAGAGACTTGCTGGCAGAAATGGCTAAGTAAGGTGGCTAAAATTAAATGCTATG
* * *
820478 GTGGCTGTCCAGAGCTTAGGAGGAAGATAGGGTGGCTGGAGTAAATGCTCAGCAACCACTGATGA
195 GTGGCTGGCCAAAGCTTAGGAGGAAGATAGGGTGGCTGGAGTAAATGCTCAGCAACCAATGATGA
820543 CAATGAGTTCCATCAGCCATTTC
260 CAATGAGTTCCATCAGCCATTTC
820566 ATTAAATGCA
Statistics
Matches: 257, Mismatches: 19, Indels: 11
0.90 0.07 0.04
Matches are distributed among these distances:
277 127 0.49
279 1 0.00
281 1 0.00
283 1 0.00
285 78 0.30
286 49 0.19
ACGTcount: A:0.32, C:0.13, G:0.25, T:0.30
Consensus pattern (282 bp):
TCTTTTAATGTTTAAAGTATATTAAGAGTGTATGAGGAATGGAAACCGAAAGATCCTCTGCTGAG
ATCAAAAAGTGCTTTTTATAGACAACATTTTAGAGTCAAAGATGAGAGTATTTGAGACATTTCCC
TTTCAATATTAAGAGACTTGCTGGCAGAAATGGCTAAGTAAGGTGGCTAAAATTAAATGCTATGG
TGGCTGGCCAAAGCTTAGGAGGAAGATAGGGTGGCTGGAGTAAATGCTCAGCAACCAATGATGAC
AATGAGTTCCATCAGCCATTTC
Found at i:820813 original size:20 final size:21
Alignment explanation
Indices: 820788--820842 Score: 67
Period size: 20 Copynumber: 2.7 Consensus size: 21
820778 AAAAACCCAG
820788 AATGTATCGATACAATG-AAA
1 AATGTATCGATACAATGCAAA
* * *
820808 AATGTATTGATACACTGCAAG
1 AATGTATCGATACAATGCAAA
*
820829 CATGTATCGATACA
1 AATGTATCGATACA
820843 TTTACTTATG
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
20 15 0.52
21 14 0.48
ACGTcount: A:0.42, C:0.15, G:0.16, T:0.27
Consensus pattern (21 bp):
AATGTATCGATACAATGCAAA
Found at i:834474 original size:17 final size:17
Alignment explanation
Indices: 834452--834487 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
834442 TACAAAATAA
* *
834452 ATTTTTAATATTTTAAT
1 ATTTTTAAAATATTAAT
834469 ATTTTTAAAATATTAAT
1 ATTTTTAAAATATTAAT
834486 AT
1 AT
834488 AAATTTTTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (17 bp):
ATTTTTAAAATATTAAT
Found at i:835316 original size:22 final size:24
Alignment explanation
Indices: 835290--835342 Score: 58
Period size: 21 Copynumber: 2.3 Consensus size: 24
835280 TTATTACCAC
*
835290 TTTTAATTTTATCATTA-CAATAA
1 TTTTAATTTCATCATTATCAATAA
* *
835313 -TTT-ATTTCATTATTATTAATAA
1 TTTTAATTTCATCATTATCAATAA
835335 TTTTAATT
1 TTTTAATT
835343 CTATTAAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 5
0.75 0.09 0.16
Matches are distributed among these distances:
21 10 0.42
22 8 0.33
23 3 0.12
24 3 0.12
ACGTcount: A:0.36, C:0.06, G:0.00, T:0.58
Consensus pattern (24 bp):
TTTTAATTTCATCATTATCAATAA
Found at i:835348 original size:24 final size:23
Alignment explanation
Indices: 835290--835348 Score: 59
Period size: 22 Copynumber: 2.6 Consensus size: 23
835280 TTATTACCAC
* *
835290 TTTTAATTTTATCATTACAATAA
1 TTTTAATTCTATTATTACAATAA
* *
835313 -TTTATTTC-ATTATTATTAATAA
1 TTTTAATTCTATTATTA-CAATAA
835335 TTTTAATTCTATTA
1 TTTTAATTCTATTA
835349 AAATCAATCT
Statistics
Matches: 28, Mismatches: 5, Indels: 5
0.74 0.13 0.13
Matches are distributed among these distances:
21 6 0.21
22 11 0.39
23 7 0.25
24 4 0.14
ACGTcount: A:0.36, C:0.07, G:0.00, T:0.58
Consensus pattern (23 bp):
TTTTAATTCTATTATTACAATAA
Found at i:836292 original size:20 final size:19
Alignment explanation
Indices: 836241--836299 Score: 68
Period size: 20 Copynumber: 3.1 Consensus size: 19
836231 TGAATACATC
836241 ATAAAATTAATT-TTAATAAA
1 ATAAAA-TAATTATT-ATAAA
*
836261 ATTAAA-AATTATTATAATA
1 ATAAAATAATTATTATAA-A
836280 ATAAAATAATTATTATAAA
1 ATAAAATAATTATTATAAA
836299 A
1 A
836300 AAATTAAAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
18 8 0.24
19 10 0.29
20 16 0.47
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (19 bp):
ATAAAATAATTATTATAAA
Found at i:836310 original size:20 final size:20
Alignment explanation
Indices: 836242--836311 Score: 63
Period size: 20 Copynumber: 3.4 Consensus size: 20
836232 GAATACATCA
* *
836242 TAAAATTAATTTTAATAAAAT
1 TAAAATT-ATTATAAAAAAAT
836263 TAAAAATTATTATAATAATAAA-
1 T-AAAATTATTATAA-AA-AAAT
*
836285 -ATAATTATTATAAAAAAAT
1 TAAAATTATTATAAAAAAAT
836304 TAAAATTA
1 TAAAATTA
836312 ATAATAAAAT
Statistics
Matches: 40, Mismatches: 4, Indels: 11
0.73 0.07 0.20
Matches are distributed among these distances:
18 3 0.08
19 2 0.05
20 18 0.45
21 7 0.17
22 7 0.17
23 3 0.08
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (20 bp):
TAAAATTATTATAAAAAAAT
Found at i:836320 original size:18 final size:19
Alignment explanation
Indices: 836275--836321 Score: 55
Period size: 18 Copynumber: 2.6 Consensus size: 19
836265 AAAATTATTA
*
836275 TAATAATAAAA-TAATTAT
1 TAATAATAAAATTAATAAT
*
836293 T-ATAAAAAAATTAA-AAT
1 TAATAATAAAATTAATAAT
836310 TAATAATAAAAT
1 TAATAATAAAAT
836322 ATGTATTTAA
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
17 11 0.46
18 13 0.54
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (19 bp):
TAATAATAAAATTAATAAT
Found at i:836320 original size:20 final size:21
Alignment explanation
Indices: 836242--836318 Score: 63
Period size: 17 Copynumber: 3.7 Consensus size: 21
836232 GAATACATCA
**
836242 TAAAATTAATTTTAATAAAAT
1 TAAAATTAATAATAATAAAAT
836263 TAAAAATTATTATAATAATAAAA-
1 T-AAAATTA--ATAATAATAAAAT
* *
836286 T--AATT-ATTATAAAAAAAT
1 TAAAATTAATAATAATAAAAT
836304 TAAAATTAATAATAA
1 TAAAATTAATAATAA
836319 AATATGTATT
Statistics
Matches: 44, Mismatches: 5, Indels: 14
0.70 0.08 0.22
Matches are distributed among these distances:
17 10 0.23
18 1 0.02
20 8 0.18
21 7 0.16
22 7 0.16
23 1 0.02
24 10 0.23
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (21 bp):
TAAAATTAATAATAATAAAAT
Found at i:836531 original size:25 final size:28
Alignment explanation
Indices: 836491--836546 Score: 75
Period size: 25 Copynumber: 2.1 Consensus size: 28
836481 AATATTTTTG
836491 TATTTATTTTGTATT-A-TT-TATTAAT
1 TATTTATTTTGTATTAATTTATATTAAT
836516 TATTTATTTT-TAATTAATTTATATTAAT
1 TATTTATTTTGT-ATTAATTTATATTAAT
836544 TAT
1 TAT
836547 ATAATAATAA
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
24 1 0.04
25 13 0.48
26 1 0.04
27 2 0.07
28 10 0.37
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (28 bp):
TATTTATTTTGTATTAATTTATATTAAT
Found at i:838735 original size:13 final size:13
Alignment explanation
Indices: 838717--838744 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
838707 ACAAACAGTA
838717 AATGTATCGATAC
1 AATGTATCGATAC
838730 AATGTATCGATAC
1 AATGTATCGATAC
838743 AA
1 AA
838745 AGCTATCTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.43, C:0.14, G:0.14, T:0.29
Consensus pattern (13 bp):
AATGTATCGATAC
Found at i:838793 original size:20 final size:20
Alignment explanation
Indices: 838768--838805 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
838758 ACTACCAAAG
838768 AAATGTATCAATACATTAAT
1 AAATGTATCAATACATTAAT
838788 AAATGTATCAATACATTA
1 AAATGTATCAATACATTA
838806 TATCGATACA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.50, C:0.11, G:0.05, T:0.34
Consensus pattern (20 bp):
AAATGTATCAATACATTAAT
Found at i:838828 original size:33 final size:33
Alignment explanation
Indices: 838773--838836 Score: 83
Period size: 33 Copynumber: 1.9 Consensus size: 33
838763 CAAAGAAATG
838773 TATCAATACATTAATAAATGTATCAATACATTA
1 TATCAATACATTAATAAATGTATCAATACATTA
* * * * *
838806 TATCGATACATTTATCATTGTATCGATACAT
1 TATCAATACATTAATAAATGTATCAATACAT
838837 CTGGGAATTT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
33 26 1.00
ACGTcount: A:0.41, C:0.14, G:0.06, T:0.39
Consensus pattern (33 bp):
TATCAATACATTAATAAATGTATCAATACATTA
Found at i:838882 original size:20 final size:20
Alignment explanation
Indices: 838857--838907 Score: 84
Period size: 20 Copynumber: 2.5 Consensus size: 20
838847 TACCCAGATG
838857 TATCGATATATTATTCAATA
1 TATCGATATATTATTCAATA
* *
838877 TATCGATACATTATTCAATG
1 TATCGATATATTATTCAATA
838897 TATCGATATAT
1 TATCGATATAT
838908 ATAGGTAAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.37, C:0.12, G:0.08, T:0.43
Consensus pattern (20 bp):
TATCGATATATTATTCAATA
Found at i:843332 original size:23 final size:23
Alignment explanation
Indices: 843305--843348 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
843295 TTTAGATGGG
* *
843305 TTTTACTTGAGTTTTAGTTTATC
1 TTTTAATTGAGTTTGAGTTTATC
*
843328 TTTTAATTGTGTTTGAGTTTA
1 TTTTAATTGAGTTTGAGTTTA
843349 GGGTTTATTA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.18, C:0.05, G:0.16, T:0.61
Consensus pattern (23 bp):
TTTTAATTGAGTTTGAGTTTATC
Found at i:843381 original size:20 final size:20
Alignment explanation
Indices: 843356--843426 Score: 72
Period size: 21 Copynumber: 3.5 Consensus size: 20
843346 TTAGGGTTTA
843356 TTAAATATTATAAATATATT
1 TTAAATATTATAAATATATT
* *
843376 TTAAATATTTGTCAAACATA-T
1 TTAAATA-TTAT-AAATATATT
* *
843397 TTATATTTTATTAAATATATT
1 TTAAATATTA-TAAATATATT
843418 TTAAATATT
1 TTAAATATT
843427 TATTAAGCAT
Statistics
Matches: 39, Mismatches: 8, Indels: 7
0.72 0.15 0.13
Matches are distributed among these distances:
20 15 0.38
21 18 0.46
22 6 0.15
ACGTcount: A:0.44, C:0.03, G:0.01, T:0.52
Consensus pattern (20 bp):
TTAAATATTATAAATATATT
Found at i:843432 original size:11 final size:11
Alignment explanation
Indices: 843352--843432 Score: 57
Period size: 11 Copynumber: 7.7 Consensus size: 11
843342 GAGTTTAGGG
843352 TTTATTAAATA
1 TTTATTAAATA
843363 -TTA-TAAATA
1 TTTATTAAATA
843372 TATT-TTAAATA
1 T-TTATTAAATA
* * *
843383 TTTGTCAAACA
1 TTTATTAAATA
* *
843394 TAT-TTATAT-
1 TTTATTAAATA
843403 TTTATTAAATA
1 TTTATTAAATA
843414 TATT-TTAAATA
1 T-TTATTAAATA
843425 TTTATTAA
1 TTTATTAA
843433 GCATATAAAT
Statistics
Matches: 54, Mismatches: 8, Indels: 16
0.69 0.10 0.21
Matches are distributed among these distances:
9 8 0.15
10 15 0.28
11 29 0.54
12 2 0.04
ACGTcount: A:0.43, C:0.02, G:0.01, T:0.53
Consensus pattern (11 bp):
TTTATTAAATA
Found at i:843438 original size:22 final size:22
Alignment explanation
Indices: 843356--843438 Score: 84
Period size: 22 Copynumber: 4.0 Consensus size: 22
843346 TTAGGGTTTA
*
843356 TTAAATA-TTA-TAAATATATT
1 TTAAATATTTATTAAACATATT
* *
843376 TTAAATATTTGTCAAACATA-T
1 TTAAATATTTATTAAACATATT
* *
843397 TTATAT-TTTATTAAATATATT
1 TTAAATATTTATTAAACATATT
*
843418 TTAAATATTTATTAAGCATAT
1 TTAAATATTTATTAAACATAT
843439 AAATAATTTA
Statistics
Matches: 49, Mismatches: 10, Indels: 6
0.75 0.15 0.09
Matches are distributed among these distances:
20 17 0.35
21 14 0.29
22 18 0.37
ACGTcount: A:0.43, C:0.04, G:0.02, T:0.51
Consensus pattern (22 bp):
TTAAATATTTATTAAACATATT
Found at i:843438 original size:42 final size:42
Alignment explanation
Indices: 843366--843456 Score: 119
Period size: 42 Copynumber: 2.2 Consensus size: 42
843356 TTAAATATTA
* ** * *
843366 TAAATATATTTTAAATATTTGTCAAACATATTTATATTTTAT
1 TAAATATATTTTAAATATTTATCAAACATATAAATAATTTAC
* *
843408 TAAATATATTTTAAATATTTATTAAGCATATAAATAATTTAC
1 TAAATATATTTTAAATATTTATCAAACATATAAATAATTTAC
843450 TAAATAT
1 TAAATAT
843457 TAATTTGACA
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.45, C:0.04, G:0.02, T:0.48
Consensus pattern (42 bp):
TAAATATATTTTAAATATTTATCAAACATATAAATAATTTAC
Found at i:843930 original size:20 final size:19
Alignment explanation
Indices: 843884--843937 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 19
843874 AAAACCCTGA
* *
843884 AAAGTATCGATACACCTTT
1 AAAGTATCGATACACATTC
*
843903 AAATGTATCGATACAGATTGC
1 AAA-GTATCGATACACATT-C
843924 AAAGTATCGATACA
1 AAAGTATCGATACA
843938 TGACCAAATG
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
19 3 0.10
20 24 0.80
21 3 0.10
ACGTcount: A:0.41, C:0.17, G:0.15, T:0.28
Consensus pattern (19 bp):
AAAGTATCGATACACATTC
Found at i:843950 original size:20 final size:20
Alignment explanation
Indices: 843903--843978 Score: 75
Period size: 20 Copynumber: 3.8 Consensus size: 20
843893 ATACACCTTT
*
843903 AAATGTATCGATACA-GATTGC
1 AAATGTATCGATACATGA--AC
*
843924 AAA-GTATCGATACATGACC
1 AAATGTATCGATACATGAAC
* *
843943 AAATGTATCGATACTTGAAA
1 AAATGTATCGATACATGAAC
843963 AAACTGTATCGATACA
1 AAA-TGTATCGATACA
843979 GGTCATTGGC
Statistics
Matches: 47, Mismatches: 5, Indels: 6
0.81 0.09 0.10
Matches are distributed among these distances:
19 4 0.09
20 27 0.57
21 16 0.34
ACGTcount: A:0.42, C:0.16, G:0.16, T:0.26
Consensus pattern (20 bp):
AAATGTATCGATACATGAAC
Found at i:850957 original size:8 final size:8
Alignment explanation
Indices: 850940--850973 Score: 59
Period size: 8 Copynumber: 4.2 Consensus size: 8
850930 TTTGACTAAA
*
850940 ATTTTTTG
1 ATTTTGTG
850948 ATTTTGTG
1 ATTTTGTG
850956 ATTTTGTG
1 ATTTTGTG
850964 ATTTTGTG
1 ATTTTGTG
850972 AT
1 AT
850974 GAATGATATT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
8 25 1.00
ACGTcount: A:0.15, C:0.00, G:0.21, T:0.65
Consensus pattern (8 bp):
ATTTTGTG
Found at i:851194 original size:13 final size:13
Alignment explanation
Indices: 851176--851213 Score: 67
Period size: 13 Copynumber: 2.9 Consensus size: 13
851166 CAGTATTCTC
*
851176 TGTATCGATACAT
1 TGTATCGATACAG
851189 TGTATCGATACAG
1 TGTATCGATACAG
851202 TGTATCGATACA
1 TGTATCGATACA
851214 AAGGGTTTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.34
Consensus pattern (13 bp):
TGTATCGATACAG
Found at i:851380 original size:20 final size:20
Alignment explanation
Indices: 851345--851385 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 20
851335 CAAATTTCTT
851345 GTTTTTCACTTCAAAATACATC
1 GTTTTTCAC-TCAAAAT-CATC
851367 GTTTTTCA-TCAAAATCATC
1 GTTTTTCACTCAAAATCATC
851386 AACAAAAACA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 4 0.21
20 7 0.37
22 8 0.42
ACGTcount: A:0.32, C:0.22, G:0.05, T:0.41
Consensus pattern (20 bp):
GTTTTTCACTCAAAATCATC
Found at i:853701 original size:13 final size:13
Alignment explanation
Indices: 853683--853707 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
853673 AGATTGCACA
853683 GTATCGATACATT
1 GTATCGATACATT
853696 GTATCGATACAT
1 GTATCGATACAT
853708 GACCAAATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
GTATCGATACATT
Found at i:853720 original size:20 final size:21
Alignment explanation
Indices: 853695--853747 Score: 72
Period size: 20 Copynumber: 2.6 Consensus size: 21
853685 ATCGATACAT
**
853695 TGTATCGATACATGACCA-AA
1 TGTATCGATACATGAAAAGAA
*
853715 TGTATCGATACTTGAAAAGAA
1 TGTATCGATACATGAAAAGAA
853736 TGTATCGATACA
1 TGTATCGATACA
853748 GGTCATTGGC
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
20 15 0.54
21 13 0.46
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.28
Consensus pattern (21 bp):
TGTATCGATACATGAAAAGAA
Found at i:853815 original size:13 final size:13
Alignment explanation
Indices: 853797--853822 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
853787 ACACACAATA
853797 TGTATCGATACAT
1 TGTATCGATACAT
853810 TGTATCGATACAT
1 TGTATCGATACAT
853823 CCTAAAATGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:853838 original size:33 final size:32
Alignment explanation
Indices: 853777--853843 Score: 100
Period size: 33 Copynumber: 2.1 Consensus size: 32
853767 CCTTAACTGT
*
853777 TTGTATCGATACACACAATATGTATCGATACA
1 TTGTATCGATACACACAAAATGTATCGATACA
853809 TTGTATCGATACATC-CTAAAATGTATCGATACA
1 TTGTATCGATACA-CAC-AAAATGTATCGATACA
853842 TT
1 TT
853844 AGCTTGTAAC
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
32 14 0.44
33 18 0.56
ACGTcount: A:0.36, C:0.18, G:0.12, T:0.34
Consensus pattern (32 bp):
TTGTATCGATACACACAAAATGTATCGATACA
Found at i:858561 original size:2 final size:2
Alignment explanation
Indices: 858554--858600 Score: 94
Period size: 2 Copynumber: 23.5 Consensus size: 2
858544 CAACAGGATG
858554 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
858596 AT AT A
1 AT AT A
858601 AACGACATAT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 45 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:858814 original size:20 final size:21
Alignment explanation
Indices: 858786--858828 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 21
858776 TAAAAAATTT
*
858786 TAAAGTTTTTAT-TTTTTGTA
1 TAAAGTTTTTATGTATTTGTA
*
858806 TAAATTTTTTATGTATTTGTA
1 TAAAGTTTTTATGTATTTGTA
858827 TA
1 TA
858829 TTTATATCGT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 11 0.55
21 9 0.45
ACGTcount: A:0.28, C:0.00, G:0.09, T:0.63
Consensus pattern (21 bp):
TAAAGTTTTTATGTATTTGTA
Found at i:859165 original size:31 final size:32
Alignment explanation
Indices: 859125--859185 Score: 88
Period size: 32 Copynumber: 1.9 Consensus size: 32
859115 ATATTTAAAT
859125 TAATATATTT-ATATAAATTTTGACATATTAA
1 TAATATATTTAATATAAATTTTGACATATTAA
* * *
859156 TAATTTATTTAATTTAGATTTTGACATATT
1 TAATATATTTAATATAAATTTTGACATATT
859186 TATCTATTTA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
31 9 0.35
32 17 0.65
ACGTcount: A:0.39, C:0.03, G:0.05, T:0.52
Consensus pattern (32 bp):
TAATATATTTAATATAAATTTTGACATATTAA
Done.