Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold299
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 460272
ACGTcount: A:0.31, C:0.19, G:0.16, T:0.34
File 2 of 3
Found at i:205872 original size:13 final size:13
Alignment explanation
Indices: 205854--205878 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
205844 ACATAAGTGT
205854 TGTATCGATACAA
1 TGTATCGATACAA
205867 TGTATCGATACA
1 TGTATCGATACA
205879 TAAGTTTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:205872 original size:32 final size:32
Alignment explanation
Indices: 205835--205896 Score: 115
Period size: 32 Copynumber: 1.9 Consensus size: 32
205825 TTCAACAATT
205835 TGTATCGATACATAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAGTGTTGTATCGATACAA
*
205867 TGTATCGATACATAAGTTTTGTATCGATAC
1 TGTATCGATACATAAGTGTTGTATCGATAC
205897 TAACGAAGCT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.32, C:0.13, G:0.18, T:0.37
Consensus pattern (32 bp):
TGTATCGATACATAAGTGTTGTATCGATACAA
Found at i:205959 original size:13 final size:13
Alignment explanation
Indices: 205941--205965 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
205931 ATTACTCAAA
205941 TGTATCGATACAT
1 TGTATCGATACAT
205954 TGTATCGATACA
1 TGTATCGATACA
205966 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:206016 original size:52 final size:52
Alignment explanation
Indices: 205974--206095 Score: 217
Period size: 52 Copynumber: 2.3 Consensus size: 52
205964 CACTGATCTT
* *
205974 TGTATCGATACGTGCAGGCAAATTTGCCTAGATGTATCGATACACTATGAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATGAAA
*
206026 TGTATCGATACATGCAGGCAAATTTGCCCAGATATATCGATACACTATGAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATGAAA
206078 TGTATCGATACATGCAGG
1 TGTATCGATACATGCAGG
206096 TAAAATTTCA
Statistics
Matches: 67, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 67 1.00
ACGTcount: A:0.34, C:0.18, G:0.20, T:0.28
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATGAAA
Found at i:214609 original size:476 final size:471
Alignment explanation
Indices: 213685--215883 Score: 2387
Period size: 476 Copynumber: 4.7 Consensus size: 471
213675 CATTACTATG
213685 AATGATATTGATGATTTTATTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCTTAAAATCAAA
1 AATGATATTGATGATTTTATTTTGCATGGAAATGTTTCC-TTGCCCTATTTTCCTTAAAATCAAA
* * ** *
213750 GTTCA-CCCGTTAAATAAGGCAAGCATTGATTCTCGTAACAGTTCCCATTCCTCTTAAGTTTGGG
65 GTTCATCCC-TTAAATAAGGCAAGCATTGATTCTCGTAACAATT-CCATT--TTTTTTGATTGGG
* * ** *
213814 -------AAC-CAA-CCCTTCATTAGGATACATGACCTTGATGCTTCAGG-ACCGCAAGAAAAGC
126 AACCAAAAACACAATCCCTTCATTAGGATACATGACATTGATGCTT-TGGTGTCGTAAGAAAAGC
* * * * * * * *
213869 TATTCTTTCCATCATTTTTTATGGAATCAAAGTTTTTCTCCTAAATAAGACAAACATGAATAGTC
190 TTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTC
** * * ** *
213934 ATACTAGGCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTGCCAATAAGGATAGACG
255 ATACTA-ATCCCTTTCTTTTCAGGATTAGGCACCATAAACATAGTCTT-CTTATAAGGATACACG
* * * * * **
213999 ATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCTCTCCAATTTTTGTAAAGTCTAAGTT--
318 ATATTGATGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTATATTGTCTAAGTTCA
* * * *
214062 TGCACCTCAAATGAGTCAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGACACA
383 TG--CCTCAAATAAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACT
214127 ATAAACACATTCTCCTTTTTAGGATA
446 ATAAACACATTCTCCTTTTTAGGATA
* ** *
214153 AATGATATTGATAATTTTATTTTGCATTAAAATGTTTCCTGTGCCCTATTTGCCTTAAAATCAAA
1 AATGATATTGATGATTTTATTTTGCATGGAAATGTTTCCT-TGCCCTATTTTCCTTAAAATCAAA
** *
214218 GTTCATCCCTTAAATAAGTTAAGCATTGATTCTCGTAACAGTCTCCATTCTTTTTTCGATTGGGA
65 GTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAAT-TCCATT-TTTTTT-GATTGGGA
* * *
214283 ACCAAAAACATATTCCCTTCATTAGGATACATGACATTAATGCTTTGGTGTCGTAAGAAAAGCTT
127 ACCAAAAACACAATCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGTAAGAAAAGCTT
* * * * *
214348 TTCTTCCCACCTTTTTTGATAGAATCAAAGTTTGCTCTTTTAAATAAGACAAAAATGAATAGTCA
192 TTCTTTCAACCGTTTTTGATAGAATCAAAGTTTG-TCTCTTAAATAAGACAAACATGAATAGTCA
* *
214413 TACTAATCCCTTTCTTTTCAGGATTAGGCACCATAAACATTGTCTTCTTATAAGGATGCA-GAAT
256 TACTAATCCCTTTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTTATAAGGATACACG-AT
*
214477 ATTGATGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAAATTTTATATTGTCTAAGTTCATG
320 ATTGATGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTATATTGTCTAAGTTCATG
*
214542 CCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAA
385 CCTCAAATAAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAA
* * *
214607 ACATATTCT-CTTCATTAGGGTA
450 ACACATTCTCCTT-TTTAGGATA
* * *** * *
214629 AGTGATATTGATGATTTTCTTTTGCATGGAAATGTTTCCATTGGAATTTTTTCGTTAAAATCAAA
1 AATGATATTGATGATTTTATTTTGCATGGAAATGTTTCC-TTGCCCTATTTTCCTTAAAATCAAA
* * * * * *
214694 GTTCATCTCTTAAATCAGGCAATCATTGATTGTCGTAACAATCTTCATTGTTTTCATGATTGGGA
65 GTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAAT-TCCATT-TTTT-TTGATTGGGA
* * *
214759 ACCAAAAACACAATCCTTTCATTAGGATACATGAGATTGATGCTTTAGTGTCGCT-AGAAAAGCT
127 ACCAAAAACACAATCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCG-TAAGAAAAGCT
* * ** * * *
214823 TTTCTTTCAACCGTTTTTGTTACAATCAAAGTTTGTCTCTCCAATAAGATAAACTTGAATAGTTA
191 TTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCA
* * * *
214888 TAGTAATCCCTAGTCTTTTTAGGATTAGGCACCATAAACATAGTTTTCTCT-TAAGGATACACGA
256 TACTAATCCCT-TTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCT-TATAAGGATACACGA
* ** * ** *
214952 TATTGACGCTTTGGTTTCGTAGGAAAGGCTTTCTTCTGACCATTTTTTATAATT-TCTAAGTTCA
319 TATTGATGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTAT-ATTGTCTAAGTTCA
* * * *
215016 TGCCTCAAATAAGGCCAACACGGATTCTAGTAATGTTCTTCATTCATTTTGTGATTAGGCACTAT
383 TGCCTCAAATAAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTAT
* **
215081 AAACAGATTCTCCTCCTTAGGATA
448 AAACACATTCTCCTTTTTAGGATA
* * * * * *
215105 AATGATATTGATGATTTTCA-TTTACGTAGAAATCTTTTCTTTGCCCTATTTTTCTTAAAATCGA
1 AATGATATTGATGATTTT-ATTTTGCATGGAAAT-GTTTCCTTGCCCTATTTTCCTTAAAATC-A
* * * * * *
215169 AA-TTCACCCCTTAAA-ATTGACAAGCATTGATTCTCGTAACAATTTACATTTTTTTCAAGACTG
63 AAGTTCATCCCTTAAATA-AGGCAAGCATTGATTCTCGTAACAA-TTCCATTTTTTT--TGATTG
* *
215232 GGAACCAAAAACACAATCCCTTCATTAGGATACGTGACATTGATACTTTGGTGTCGTAAGAAAAG
124 GGAACCAAAAACACAATCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGTAAGAAAAG
** * * *
215297 CTTTTCCTTT-AACCGCATCT-ATTAGAATCAAAGTTTGTCTCTTCAATAAGACAAAAATGAATA
189 CTTTT-CTTTCAACCGTTTTTGA-TAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATA
* * *
215360 GTCATACTAATCCCCATTCTTTTCAAGACTAGGCACCATAAACATAGTCTTCTTATAAGGATACA
252 GTCATACTAAT-CCCTTTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTTATAAGGATACA
* * * * * * *
215425 CGATAATGATGCTTTAGTTTTATAAGAAAGGCTTTCTTCCCACCAATTTTTATGTTGTCCAAATT
316 CGATATTGATGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTATATTGTCTAAGTT
** * * *
215490 TGTGCCTCAAATAAGACAAACATTGATTCTAGTAATGATCTTCTTTCATTTTGCGATTAGGCACT
381 CATGCCTCAAATAAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACT
* * * *
215555 ACAAATACATTCTCCTCATTAAGG-TA
446 ATAAACACATTCTCCT-TTTTAGGATA
** * *
215581 AACAATATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTCGCCCTTTTTTCCTTAAAATCAAA
1 AATGATATTGATGATTTTATTTTGCATGGAAATGTTTCCTT-GCCCTATTTTCCTTAAAATCAAA
* * *
215646 GTACATCTCTTAAATAAGGCAAGCATTGATTGTCGTAAC-ATT-CA-------TGATTGGGAACC
65 GTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAATTCCATTTTTTTTGATTGGGAACC
* * * * * *
215702 AAAAACGCAATCCCTTCATTACGATGCATGACTTTAATGCTTTGGTGTCGCT-AGAAAAGCCTTT
130 AAAAACACAATCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCG-TAAGAAAAGCTTTT
* * * *
215766 CTTTCAACCGTTTTAGTTAGAATCAAAGTTTGTCTCTTTAATAAGATAAACATGAATAGTCATAC
194 CTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATAC
** * *
215831 TAATCCCTATTCTTTTCAGGATTACACACTATAAACATAGTCTTCTCATAAGG
259 TAATCCCT-TTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTTATAAGG
215884 CTTTATCTCA
Statistics
Matches: 1455, Mismatches: 227, Indels: 102
0.82 0.13 0.06
Matches are distributed among these distances:
463 7 0.00
464 157 0.11
465 1 0.00
467 5 0.00
468 106 0.07
469 4 0.00
473 2 0.00
474 2 0.00
475 58 0.04
476 944 0.65
477 135 0.09
478 34 0.02
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.36
Consensus pattern (471 bp):
AATGATATTGATGATTTTATTTTGCATGGAAATGTTTCCTTGCCCTATTTTCCTTAAAATCAAAG
TTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAATTCCATTTTTTTTGATTGGGAACCA
AAAACACAATCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGTAAGAAAAGCTTTTCT
TTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTA
ATCCCTTTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTTATAAGGATACACGATATTGAT
GCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTATATTGTCTAAGTTCATGCCTCAA
ATAAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACAT
TCTCCTTTTTAGGATA
Found at i:219674 original size:950 final size:946
Alignment explanation
Indices: 215892--220426 Score: 5138
Period size: 950 Copynumber: 4.8 Consensus size: 946
215882 GGCTTTATCT
* * * * * * **
215892 CACCAATTTTTATAATGTTTAAGTTCATGCCTCAAATAAGACAAATGTGGATTCTAGTAATGATC
1 CACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGTCAAACATGGATTCTAGTAATGATC
* * * * *
215957 TTCATTCATTTTGGGATTAGTCACTATAAGCACATTCTT-CTCATTAGGGTAAAAGATATTGCTA
66 TTCATTCATTTTGGGATTAG-CACTATAAACACATT-TTCCTCATTAGGATAAATGATATTGATG
* * * * * * *
216021 ATTTTCTTTTGCACGGAAAT-GTTTCTTTTGCCCTATTTTGCTCAAAATCAAAGTTCATCTCTAA
129 ATTTTCTTTTGCATGGAAATCTTTTC-TTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTA
* * ** * * * * * *
216085 AAAAAGG-AGGCATCAATTCTCATAACAGTCTCC-ATTCTTTT-GAGAATTGAGAACCAAGAATA
193 AATAAGGCAAGCATTGATTCTCGTAATAGTC-CCTATTCTTTTCAAG-ATTGGGAACCAAAAACA
* * *
216147 CATTCTCTTCTTTA-AGACACATGACATTGATGCTTTGGTGTCGCAAGAAAGGCTTTTCTTTCAA
256 CATTC-C--CTTTATA-ATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTATTCTTTCAA
* * * * *
216211 CCGTTTTTTAAAGAATTAAAGTTTGTCTCTTTAATAAGACAAACATGAATAGCCACACTAAT-CC
317 CCGTTTTTGATAGAATCAAAGTTTGTCTCTTTAATAAGACAAACATGAATAGTCATACTAATCCC
* * * * * * * * *
216275 TCATACTTTTCAGGATTACGCACCACAAACTTAGTCTCCTGATAAGGATACATGAAAATGACGCT
382 T-ATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGACGCT
* * *
216340 TTGGTTTCGCAAGAAAGGCTTTCTTCTCACCAATTTTTATAGTGTCTAAGTTTGTGCCTCAAATG
446 TTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTCGTGCCTCAAATG
* * *
216405 AGACAAACATGGATTCTAGCAACGATCTTCATTCATTTTGTGACTAGGCACTATATACACATTCT
511 AGACAAACATGGATTCTAGTAACGATCTTCATTCATTTTGTGATTA-GCACTATAAACACATTCT
* * * ** *
216470 CCTTAGTAGGGTAAAAGATATTGCCGATTTTCTTTTGCATGGAAATG-TTTCTTTTGCCTCT-TT
575 CCTCATTAGGGTAAATGATATTGATGATTTTCTTTTGCATGGAAATGTTTTC-TTCGCC-CTATT
* * * *
216533 TTCCTTAAAATTAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCTATTC
638 TTCCTTAAAATCAAAATTCATCCCTTAAATAAGGCAAGCATTGATTCTCATAACAGTCTCCATTC
* * * * *
216598 TTTTCAAGAATGGGAACTAAAAACACATTCCTTTCATTAGGTTGCATGACATTGATGCTTTGGTG
703 TTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTG
* * *
216663 TCACAAGAAAAGCTTTTCTTTCAACCG-TTTAGATTAGAATCAAAGTTTGTCTCTAAAATAAGAC
768 TCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTG-TTAGAATCAAAGTTT-TCTCTTAAATAAGAC
** * * * *
216727 AAATGTGAATAGTC-ATACTAATCCTCC-TTCTATTCA-AGATTAGGCACCACAAACATAGCCTT
831 AAACATGAATAGTCTACACTAATCC-CCATTCTTTTCAGA-ATTAGGCACCATAAACATAGTCTT
* *
216789 CTCATAA-GATACACGATATTAATGCTTTGG-TTTCACAAGAAAGGCTTT-ATCT
894 CTCATAAGGATACACGATATTAA-GCTTTGGTTTTCA-AAGAAAGGCTTTCTTCC
* * * * * *
216841 CACCAATTTTTATAATGTCTAAGTTTGTGCCTCAGATGAGACAAACGTGGATTCTAGTAATGATC
1 CACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGTCAAACATGGATTCTAGTAATGATC
* * * * * **
216906 TTCATTCATTTTGGGATTAGGCACTATAAACACATTCTCCTCGTTCGGGTAAACGATATTGCCGA
66 TTCATTCATTTTGGGATTA-GCACTATAAACACATTTTCCTCATTAGGATAAATGATATTGATGA
* * *
216971 TTTTCTTTTGCATGGAAAT-GTTTCTTTTGCCCTATTTTCCTTAAAATTAAAGTTCATCCCTTAA
130 TTTTCTTTTGCATGGAAATCTTTTC-TTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAA
* * *
217035 ATAAGGCAAGCATTGATTCTCGTAATAGTCTCTATTCTTTTCAAGATCGGGAACTAAAAACACAT
194 ATAAGGCAAGCATTGATTCTCGTAATAGTCCCTATTCTTTTCAAGATTGGGAACCAAAAACACAT
* * ** *
217100 T-CCTTTCACTAGAATGCATGACATTGATGCTTTGGTATAACAAGAAAAGC-ATTTCTTTCAACT
259 TCCCTTT-A-T--AATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTA-TTCTTTCAACC
** * * * *
217163 GTTTAGGTTAGAATCAAAGTTTGTCTCTTAAATAAAACAAACATGAATAGTCATACTAATCCCCA
319 GTTTTTGATAGAATCAAAGTTTGTCTCTTTAATAAGACAAACATGAATAGTCATACTAATCCCTA
* * * * **
217228 TTCTATTCAGGATTAGGCACCACAAACATAGGCTTCTCATAA-GATACACGATATTAATTCTTTG
384 TTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGACGCTTTG
* * * * *
217292 GTTTCGCAAGAAAGGCTTT-ATCTCACCAATTTTTATAAAGTCTAGGTTCATGCCTCAAATGAGA
449 GTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTCGTGCCTCAAATGAGA
* * * *
217356 CAAACATGGATTCTAGTAATGATCTTCAGTCATTTTGTGATTAGGCACTATAAACATATTCTTCT
514 CAAACATGGATTCTAGTAACGATCTTCATTCATTTTGTGATTA-GCACTATAAACACATTCTCCT
* * * * *
217421 CATTAGGGTAAAAGATATTGGTGATTGTT-TTTTGCACGAAAATGTTTAT-TTTGCCCTATTTTC
578 CATTAGGGTAAATGATATTGATGATT-TTCTTTTGCATGGAAATGTTT-TCTTCGCCCTATTTTC
* * ** *
217484 CTTAAAATCAAAATTCATCCCTGAAATAAGACAAGCATCAATTCTCTTAACAGTCTCCATTCTTT
641 CTTAAAATCAAAATTCATCCCTTAAATAAGGCAAGCATTGATTCTCATAACAGTCTCCATTCTTT
* * * * *
217549 TCAAGATTGGGAACCAAGAACACATTCCTTTCATTAGGATACATAACATTGATGCATTAGTGTCG
706 TCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCG
* * * * * *
217614 CAAGAAAAGCTTTTCTTTCCATCGATTTTGATAGAATCAAAGTTTGCTTTCTTAAATAAGGCAAA
771 CAAGAAAAGCTTTTCTTTCAACCGTTTTTGTTAGAATCAAAGTTT--TCTCTTAAATAAGACAAA
* *
217679 CATGAATAGTCT-CACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACGTAGTCTTCTCAT
834 CATGAATAGTCTACACTAATCCCCATTCTTTTCAGAATTAGGCACCATAAACATAGTCTTCTCAT
* * * * * * *
217743 TAGGATAGACAATATTGATGCTTTGGTATCCCAAGAAAGGCTTTCTTCC
899 AAGGATACACGATATT-AAGCTTTGGTTTTCAAAGAAAGGCTTTCTTCC
* * * *
217792 CTCCAATTTTTGTAAAGTCTAAGTTTGTGCCTTAAATGAGTCAAACATGGATTCTAGTATTGATC
1 CACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGTCAAACATGGATTCTAGTAATGATC
* * * ** * *
217857 TTCATTCATTTTGTGATTAGACACAATAAAAACATCCTCCTCCTTAGGATAAATGATCTTGATGA
66 TTCATTCATTTTGGGATTAG-CACTATAAACACATTTTCCTCATTAGGATAAATGATATTGATGA
* *
217922 TTTTCTTTTTCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCTCTTAAA
130 TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAA
* * * * ** * * * *
217987 TATGACAAGCATCGATTCTCGTAACAGTTTCTATTCCTTTCAAGATTCGGAACCAAGAGCACATT
195 TAAGGCAAGCATTGATTCTCGTAATAGTCCCTATTCTTTTCAAGATTGGGAACCAAAAACACATT
** * * *
218052 CCCTCCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGGAAAGCTTTTCTGTT-AACCGT
260 CCCT---TTATAATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTATTCT-TTCAACCGT
* * *
218116 TTTTGATAGAATCAAAGTTTGTCTTTTTAATAAGGCAAACATGAATAGTCATACTAATCCCTATG
321 TTTTGATAGAATCAAAGTTTGTCTCTTTAATAAGACAAACATGAATAGTCATACTAATCCCTATT
* * * * *
218181 CTTTTTCAAGA-TAAGCACCATAAACATAGTCTACTCATAAGGATACATGATATTCACGCTTT-G
386 C-TTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGACGCTTTGG
* * * * *
218244 TATTCACAAGAAAGGCTTTCTACCCACC-TTTCTTTATAATGTCTAAGTTCGAGCCTCAATTGAG
450 T-TTCGCAAGAAAGGCTTTCTTCCCACCAATT-TTTATAATGTCTAAGTTCGTGCCTCAAATGAG
* * * * *
218308 GCAAATATGGATTCTAGTAACGATCTTTATTCATTTTGTGATTACGCACTATAAACATACTCTCC
513 ACAAACATGGATTCTAGTAACGATCTTCATTCATTTTGTGATTA-GCACTATAAACACATTCTCC
* * * ****
218373 TCATTAGGATAAATGATATTGATGATTTTCTTTTGCATAGAAATCTTTTCTTTTTTCTATTTTCC
577 TCATTAGGGTAAATGATATTGATGATTTTCTTTTGCATGGAAATGTTTTCTTCGCCCTATTTTCC
* * * * * * ** **
218438 ATAAAATCAAAACTCAACCTTTAAATAAGGCAAGCATTGGTTCTTATAACAAACCTTTATTCTTT
642 TTAAAATCAAAATTCATCCCTTAAATAAGGCAAGCATTGATTCTCATAAC-AGTCTCCATTCTTT
* * * * *
218503 TCATGATTAGCAGCCAAAAACACATTCCCTTCATTAGGATACATGACACTGATGCTTTGGTGTCG
706 TCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCG
* * * * *
218568 CAAGAGAAGCTTTTCTTTCCACCATTTTTGGTAGAATCAAAATTTGCTCTCTTAAATAAGACAAA
771 CAAGAAAAGCTTTTCTTTCAACCGTTTTTGTTAGAATCAAAGTTT--TCTCTTAAATAAGACAAA
* * * * * *
218633 CATGAATAGT-TATACTAATCCCCATTCTTTTCCGGATTTGGCACCATAAACGTAGTCTTCTCGT
834 CATGAATAGTCTACACTAATCCCCATTCTTTTCAGAATTAGGCACCATAAACATAGTCTTCTCAT
* * * * *
218697 TAGGATAGACGATATTAATGCTTTGGTTTTGAAAAAAAGGCTTTCCTCC
899 AAGGATACACGATATTAA-GCTTTGGTTTTCAAAGAAAGGCTTTCTTCC
* * *
218746 CACCAATTTTTGTAAAGTGTAAGCTCGTGCCTCAAATGAGTCAACCATGGATTCTAGTAATGATC
1 CACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGTCAAACATGGATTCTAGTAATGATC
* * *
218811 TCCATTAATTTTGTGATTACGCACTATAAACACATTTTCCTCATTAGGATAAATGATATTGATGA
66 TTCATTCATTTTGGGATTA-GCACTATAAACACATTTTCCTCATTAGGATAAATGATATTGATGA
* *
218876 TTTTATTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAAATTCATCCCTTAAA
130 TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAA
* * * *
218941 TAAGGCAAGCATTGATTCTCATAATAGTCCCTATTCCTCT-AAGATTGGGAACCAAAAACATATT
195 TAAGGCAAGCATTGATTCTCGTAATAGTCCCTATTCTTTTCAAGATTGGGAACCAAAAACACATT
* ** **
219005 CCCTTTATAATACATGAC-TATGATGCTTTGG-GATTGCAAGAAAAGCTATTCTTTCCTCTATTT
260 CCCTTTATAATACATGACAT-TGATGCTTTGGTG-TCGCAAGAAAAGCTATTCTTTCAACCGTTT
* * **
219068 TTGAAAGAATCAAAGTTTGTCTCTTAAATAAGACAAATTTGAATAGTCATACTAATCCCTATTCT
323 TTGATAGAATCAAAGTTTGTCTCTTTAATAAGACAAACATGAATAGTCATACTAATCCCTATTCT
* * * * *
219133 TTTCAAGATTAGGCACCATATACATAGTCTTCTCATTAA-GATAGACGATATTGATGCTTTGGTA
388 TTTCAGGATTAGGCACCATAAACATAGTCTTCTCA-TAAGGATACACGATATTGACGCTTTGGTT
* * * *
219197 TCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATAAGCCAA
452 TCGCAAGAAAGGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTCGTGCCTCAAATGAGACAA
* ** *
219262 GCATGCTTTCTAGTAAAGATCTTCATTCATTTTGTGATTAGTCACTATAAACACATTCTCCTCAT
517 ACATGGATTCTAGTAACGATCTTCATTCATTTTGTGATTAG-CACTATAAACACATTCTCCTCAT
** * * * *
219327 TAGTATAAATGATATTAATGATTTTCTTTTACATGGAAATATTTTCTTCACCCTATTTTCCTTAA
581 TAGGGTAAATGATATTGATGATTTTCTTTTGCATGGAAATGTTTTCTTCGCCCTATTTTCCTTAA
* ** *
219392 AATCAAAATTCATCCCTTAAATAAGACAAGCATCAATTCTCATAATAGTCTCCATTCTTTTCAAG
646 AATCAAAATTCATCCCTTAAATAAGGCAAGCATTGATTCTCATAACAGTCTCCATTCTTTTCAAG
* * *
219457 ATTGGGAACCAAAAACACATTCCCTTCATTTGGATACTTGACATTGTTGCTTTGGTGTCGCAAGA
711 ATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGA
* * *
219522 AAAGCTTTTCTTTCAACCGTTTTTGTTAGAATCAAAGTTTATCTTTTAAATAATACAAACGTGAA
776 AAAGCTTTTCTTTCAACCGTTTTTGTTAGAATCAAAGTTT-TCTCTTAAATAAGACAAACATGAA
* * *
219587 TAGTCATACTAATAATCCCCATTCTTTTTAGAATTAGGCACCATAAACATAGTCTTCTTATAAGG
840 TAGTC-TAC-ACTAATCCCCATTCTTTTCAGAATTAGGCACCATAAACATAGTCTTCTCATAAGG
* *
219652 ATACACGATATTGA-CATTTGGTTTTGC-AAGAAAGGCTTTCTTCT
903 ATACACGATATTAAGC-TTTGGTTTT-CAAAGAAAGGCTTTCTTCC
* * * *
219696 CACAAATTTTTGGAAAGTCTAAATTCGTGCCTCAAATGAGTCAAATATGGATTCTAGTAATGATC
1 CACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGTCAAACATGGATTCTAGTAATGATC
* * * *
219761 TTCATTCATTTTGAGATTAGGTACTATAAGCACATTCTT-CTCATTAGGATAAATGATATTAATG
66 TTCATTCATTTTGGGATTA-GCACTATAAACACATT-TTCCTCATTAGGATAAATGATATTGATG
* * * *
219825 ATTTTCTTTGGCATGAAAATCTTTTTTTTGCCCTATTTTCCATAAAATCAAAATTCATCCCTTAA
129 ATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAA
* * * * * * * * *
219890 ATATGGCAAGCAATGATTCTCGTAATACTTTCC-ATTTTTTTCAAGATTGGGATCCAAGAATAAA
194 ATAAGGCAAGCATTGATTCTCGTAATA-GTCCCTATTCTTTTCAAGATTGGGAACCAAAAACACA
* *
219954 TTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTTGCAAGAAAAGC-ATTTCTTTCAACC
258 TTCCCTTTA-TA--ATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTA-TTCTTTCAACC
* * *** * * *
220018 ATTTTTTATAGAATCAAAGTTTGTCTCTTTGGCAAGACAAACGTGAATAGTCATGCTAATCCCCA
319 GTTTTTGATAGAATCAAAGTTTGTCTCTTTAATAAGACAAACATGAATAGTCATACTAATCCCTA
* * * *
220083 TTCTTTTCAGGATTAGGCACCATAAACAAAGTCTTCACATAAGGATACACGATATTGGCACTTTA
384 TTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGACGCTTT-
220148 GGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTCGTGCCTCAAATGAG
448 GGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTCGTGCCTCAAATGAG
* * *
220213 ACAAACATGG-CTCTTAGTAATGATCTTCATTCATTTTGTGATTAAGCACTATAAACACATTATC
513 ACAAACATGGATTC-TAGTAACGATCTTCATTCATTTTGTGATT-AGCACTATAAACACATTCTC
* *
220277 CTCATTA-GGTAAATGATATTGATGATTTTCTTTTACATGGAAATGTTTCCTAT-GCCCTATTTT
576 CTCATTAGGGTAAATGATATTGATGATTTTCTTTTGCATGGAAATGTTTTCT-TCGCCCTATTTT
* * * *
220340 CCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCGTTGATTCTCCTAATAGTCTCCATTCTT
640 CCTTAAAATCAAAATTCATCCCTTAAATAAGGCAAGCATTGATTCTCATAACAGTCTCCATTCTT
*
220405 TTCATGATTGGGAACCGAAAAA
705 TTCAAGATTGGGAACC-AAAAA
220427 AAATATTCAA
Statistics
Matches: 3048, Mismatches: 466, Indels: 138
0.83 0.13 0.04
Matches are distributed among these distances:
946 4 0.00
947 3 0.00
948 321 0.11
949 409 0.13
950 766 0.25
951 450 0.15
952 56 0.02
953 208 0.07
954 698 0.23
955 131 0.04
956 2 0.00
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (946 bp):
CACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGTCAAACATGGATTCTAGTAATGATC
TTCATTCATTTTGGGATTAGCACTATAAACACATTTTCCTCATTAGGATAAATGATATTGATGAT
TTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAAT
AAGGCAAGCATTGATTCTCGTAATAGTCCCTATTCTTTTCAAGATTGGGAACCAAAAACACATTC
CCTTTATAATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTATTCTTTCAACCGTTTTTG
ATAGAATCAAAGTTTGTCTCTTTAATAAGACAAACATGAATAGTCATACTAATCCCTATTCTTTT
CAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGACGCTTTGGTTTCGC
AAGAAAGGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTCGTGCCTCAAATGAGACAAACAT
GGATTCTAGTAACGATCTTCATTCATTTTGTGATTAGCACTATAAACACATTCTCCTCATTAGGG
TAAATGATATTGATGATTTTCTTTTGCATGGAAATGTTTTCTTCGCCCTATTTTCCTTAAAATCA
AAATTCATCCCTTAAATAAGGCAAGCATTGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGG
GAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGC
TTTTCTTTCAACCGTTTTTGTTAGAATCAAAGTTTTCTCTTAAATAAGACAAACATGAATAGTCT
ACACTAATCCCCATTCTTTTCAGAATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGA
TATTAAGCTTTGGTTTTCAAAGAAAGGCTTTCTTCC
Found at i:222250 original size:8 final size:8
Alignment explanation
Indices: 222237--222267 Score: 53
Period size: 8 Copynumber: 3.8 Consensus size: 8
222227 ATTTGATTAA
222237 ATTTTGTG
1 ATTTTGTG
222245 ATTTTGTG
1 ATTTTGTG
222253 ATTTTGTG
1 ATTTTGTG
222261 ATGTTTG
1 AT-TTTG
222268 ATGTTGAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 18 0.82
9 4 0.18
ACGTcount: A:0.13, C:0.00, G:0.26, T:0.61
Consensus pattern (8 bp):
ATTTTGTG
Found at i:222643 original size:20 final size:20
Alignment explanation
Indices: 222608--222649 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 20
222598 CAAATTTCTT
222608 ATTTTTCACTTCAAAATACATC
1 ATTTTTCAC-TCAAAAT-CATC
222630 ATTTTTCA-TCAAAATCATC
1 ATTTTTCACTCAAAATCATC
222649 A
1 A
222650 ACAAAAATAG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 5 0.25
20 7 0.35
22 8 0.40
ACGTcount: A:0.38, C:0.21, G:0.00, T:0.40
Consensus pattern (20 bp):
ATTTTTCACTCAAAATCATC
Found at i:224339 original size:29 final size:29
Alignment explanation
Indices: 224297--224355 Score: 109
Period size: 29 Copynumber: 2.0 Consensus size: 29
224287 AATAAATTTA
224297 TGATTAAGGGGGAGAAAGAAACATGTGAT
1 TGATTAAGGGGGAGAAAGAAACATGTGAT
*
224326 TGATTAAGGGGGAGTAAGAAACATGTGAT
1 TGATTAAGGGGGAGAAAGAAACATGTGAT
224355 T
1 T
224356 AAAGGAAATT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.39, C:0.03, G:0.34, T:0.24
Consensus pattern (29 bp):
TGATTAAGGGGGAGAAAGAAACATGTGAT
Found at i:224407 original size:23 final size:23
Alignment explanation
Indices: 224371--224416 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
224361 AAATTGAAGG
224371 AAATTGTTTTATTAAGGGGGAGA
1 AAATTGTTTTATTAAGGGGGAGA
224394 AAATT-TTTTGATTAAGGGGGAGA
1 AAATTGTTTT-ATTAAGGGGGAGA
224417 GAAAAGGAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
22 4 0.18
23 18 0.82
ACGTcount: A:0.35, C:0.00, G:0.30, T:0.35
Consensus pattern (23 bp):
AAATTGTTTTATTAAGGGGGAGA
Found at i:224590 original size:20 final size:20
Alignment explanation
Indices: 224555--224596 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 20
224545 CAAATTTCTT
224555 ATTTTTCACTTCAAAATACATC
1 ATTTTTCAC-TCAAAAT-CATC
224577 ATTTTTCA-TCAAAATCATC
1 ATTTTTCACTCAAAATCATC
224596 A
1 A
224597 ACAAAAATAG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 5 0.25
20 7 0.35
22 8 0.40
ACGTcount: A:0.38, C:0.21, G:0.00, T:0.40
Consensus pattern (20 bp):
ATTTTTCACTCAAAATCATC
Found at i:224890 original size:20 final size:22
Alignment explanation
Indices: 224865--224909 Score: 67
Period size: 20 Copynumber: 2.1 Consensus size: 22
224855 GTAGCACTCA
*
224865 CCAGGTCGCGACC-GGCA-CCC
1 CCAGGTCGCAACCGGGCAGCCC
224885 CCAGGTCGCAACCGGGCAGCCC
1 CCAGGTCGCAACCGGGCAGCCC
224907 CCA
1 CCA
224910 CACTCACAGC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 12 0.55
21 4 0.18
22 6 0.27
ACGTcount: A:0.18, C:0.49, G:0.29, T:0.04
Consensus pattern (22 bp):
CCAGGTCGCAACCGGGCAGCCC
Found at i:226287 original size:29 final size:29
Alignment explanation
Indices: 226245--226303 Score: 109
Period size: 29 Copynumber: 2.0 Consensus size: 29
226235 AATAAATTTA
226245 TGATTAAGGGGGAGAAAGAAACATGTGAT
1 TGATTAAGGGGGAGAAAGAAACATGTGAT
*
226274 TGATTAAGGGGGAGTAAGAAACATGTGAT
1 TGATTAAGGGGGAGAAAGAAACATGTGAT
226303 T
1 T
226304 AAAGGAAATT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.39, C:0.03, G:0.34, T:0.24
Consensus pattern (29 bp):
TGATTAAGGGGGAGAAAGAAACATGTGAT
Found at i:226359 original size:21 final size:22
Alignment explanation
Indices: 226318--226363 Score: 76
Period size: 22 Copynumber: 2.1 Consensus size: 22
226308 GAAATTGAAG
226318 GAAATTGTTTTATTAAGGGGGA
1 GAAATTGTTTTATTAAGGGGGA
226340 GAAATT-TTTTGATTAAGGGGGA
1 GAAATTGTTTT-ATTAAGGGGGA
226362 GA
1 GA
226364 GAAAAGGAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
21 4 0.17
22 19 0.83
ACGTcount: A:0.33, C:0.00, G:0.33, T:0.35
Consensus pattern (22 bp):
GAAATTGTTTTATTAAGGGGGA
Found at i:226899 original size:20 final size:20
Alignment explanation
Indices: 226870--226910 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
226860 AAAGGTCAAA
*
226870 ACCTTTAAATGTATCGATAC
1 ACCTTCAAATGTATCGATAC
226890 ACCTTCAAATGTATCGATAC
1 ACCTTCAAATGTATCGATAC
226910 A
1 A
226911 TAATGCACAG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.37, C:0.22, G:0.10, T:0.32
Consensus pattern (20 bp):
ACCTTCAAATGTATCGATAC
Found at i:226938 original size:13 final size:13
Alignment explanation
Indices: 226920--226944 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
226910 ATAATGCACA
226920 GTATCGATACATT
1 GTATCGATACATT
226933 GTATCGATACAT
1 GTATCGATACAT
226945 GACCAAATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
GTATCGATACATT
Found at i:226957 original size:20 final size:21
Alignment explanation
Indices: 226932--226984 Score: 65
Period size: 20 Copynumber: 2.6 Consensus size: 21
226922 ATCGATACAT
*
226932 TGTATCGATACATG-ACCA-AA
1 TGTATCGATACATGCA-AAGAA
*
226952 TGTATCGATACTTGCAAAGAA
1 TGTATCGATACATGCAAAGAA
226973 TGTATCGATACA
1 TGTATCGATACA
226985 GGCGATTGGC
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
20 14 0.50
21 14 0.50
ACGTcount: A:0.38, C:0.17, G:0.17, T:0.28
Consensus pattern (21 bp):
TGTATCGATACATGCAAAGAA
Found at i:227062 original size:13 final size:13
Alignment explanation
Indices: 227044--227069 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
227034 TACACACAAG
227044 ATGTATCGATACA
1 ATGTATCGATACA
227057 ATGTATCGATACA
1 ATGTATCGATACA
227070 TCCCAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:230178 original size:476 final size:474
Alignment explanation
Indices: 228253--230829 Score: 3293
Period size: 476 Copynumber: 5.4 Consensus size: 474
228243 CCTTATTTCT
* * *
228253 ATAAATGATATTGATGATTTTATTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCTTAAAATC
1 ATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATC
*
228318 AAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGA-CTCCATTCCTTTT-AAGTT
66 AAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACA-ATCTCCATT-CTTTTCAAGAT
* * * * * * *
228381 TAGGAACCAAAAACATATTCCCTTCTTTAGGATACATGACCTTGATGCTTCGGTATCGCAAAAAA
129 TGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAA
* * * * * * * * * * * *
228446 AGCTATTATTTCCATCATTTTTTATAGAGTCAAAGTTTATCCCCTAAATAAGACAAGCATGAATA
194 AGCTTTTCTTTCAACCGTTTTGT-TAGAATCAAAGTTTGTCTCTTCAATAAGACAAACATGAATA
* * * *
228511 GTCATACTAAGCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCTTTAA-GATAG
258 GTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCT-TATAAGGATAC
* * * *
228575 ACGATATTGATGTTTTGGTTTCGCAAGAAAGACTTTTTTCTCTCTAATTTTTGTAAAGTCTAAGT
322 ACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTC-CACCAATTTTTGTAAAGTCTAAGT
* * * * * *
228640 TTGCGCCTCAAATGAGTCAAACATGAATTCTACTAACGATCTTCATTCATTTTGTGATTAGACA-
386 TCGTGCCTCAAATGAGACAAACATGGATTCTAGTAACGATCTTCATTCATTTTGTGATTAGGCAC
* * *
228704 TAATAAACATATTCT-CTGCTTTAAG
451 T-ATAAACACATTCTCCT-CATTAGG
* *
228729 ATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCTTATTTTCCTTAAAATC
1 ATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATC
* ** * *
228794 AAAGTTCATCGCTTAAATAAGGCAAGCATTGATTCTTATAACAATCTCTATTCCTTTCAAGATTG
66 AAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAATCTCCATTCTTTTCAAGATTG
* * *
228859 GGAACCAAAAACACAATCCCTTCATTAGGATACACGACATTGATGCTTTGGTGTCACAAGAAAAG
131 GGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAG
** *
228924 CTTTTCTTTCAAACATTTTTGTTAGAATCAAAGTTTGTCTCTTCAATAAGACAAACAAGAATAGT
196 CTTTTCTTTC-AACCGTTTTGTTAGAATCAAAGTTTGTCTCTTCAATAAGACAAACATGAATAGT
*
228989 CATACTAAT-CCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTTATAAGGATGCACG
260 CATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTTATAAGGATACACG
* * * * * * * **
229053 ATATTGACGCTTCGGTTTCACCAGACAGGCTTTCTTCCCACCAATTTTTATATTGTCTAAGTTCG
325 ATATTGATGCTTTGGTTTCGCAAGAAAGGCTTT-TTTCCACCAATTTTTGTAAAGTCTAAGTTCG
* *
229118 TGCCTCAAATGAGACAAACATGGATTCCAGTAATGATCTTCATTCATTTTGTGATTAGGCACTAT
389 TGCCTCAAATGAGACAAACATGGATTCTAGTAACGATCTTCATTCATTTTGTGATTAGGCACTAT
229183 AAACACATTCTCCTCATTAGG
454 AAACACATTCTCCTCATTAGG
* * * * ** * * *
229204 GTAAATGATATTGATGATTTTCTTTTACATGGAAATGTTTCCTTTGCAATTTTTTTCGTAAAATC
1 ATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATC
* * * * *
229269 AAAGTTCATCTCTTAAATAAGGCAAGCATTGACTGTCGTAACAATTTCCATTCTTTTCATGATTG
66 AAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAATCTCCATTCTTTTCAAGATTG
* * * *
229334 GGAACCAAAAACACAATCCCTTCATTAGGATAAATGACATTGATGCTTTGGTGTCGCTAGAAAAA
131 GGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAG
* *
229399 CTTTTCTTTCAACCGCGTTTGTTACAATCAAAGTTTGTCTCTTCAATAAG-CTAAACATGAATAG
196 CTTTTCTTTCAACCG-TTTTGTTAGAATCAAAGTTTGTCTCTTCAATAAGAC-AAACATGAATAG
* * * *
229463 TTATACTAAT-CCCAATCTTTTCAGGATTAGGCACCATAAACATAGTTTTCTCATAAGGATACAC
259 TCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTTATAAGGATACAC
* * * * * *
229527 GATATTGATGTTTTGGTTTCGTAGGAAAAGCTTTCTTCCGACCAATTTTTGTAACGTCTAAGTTC
324 GATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCC-ACCAATTTTTGTAAAGTCTAAGTTC
** * *
229592 AAGCTTCAAATGAGACTAACATGGATTCTAGTAACGATCTTCATTCATTTTGTGATTAGGCACTA
388 GTGCCTCAAATGAGACAAACATGGATTCTAGTAACGATCTTCATTCATTTTGTGATTAGGCACTA
* *
229657 TAAACACATTTTCCTCCTTAGG
453 TAAACACATTCTCCTCATTAGG
* ** *
229679 ATCAATGATATTGATGATTTTCTTTTGTGTAGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATC
1 ATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATC
* * * ** * *
229744 AAAATTCATCCCTTAAA-ATTGACAAGCATTGATTCTCAAAACAATCTCCATTCTTCTCAATATT
66 AAAGTTCATCCCTTAAATA-AGGCAAGCATTGATTCTCGTAACAATCTCCATTCTTTTCAAGATT
* * *
229808 GGGAACCAAAAACACAGTCCCTTCATTAGGATACATGACATTGATGTTTTGGTGTAGCAAGAAAA
130 GGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAA
* *
229873 GCTTTTCTTTCAATCGTTTCTGTTAGAATCAAAGTTTGTCTCTTCAATAAGACAAAAATGAATAG
195 GCTTTTCTTTCAACCGTTT-TGTTAGAATCAAAGTTTGTCTCTTCAATAAGACAAACATGAATAG
* * * *
229938 TCATACTAATCCCCATTCATTTCAGGTTTAGGCACCGTAAACATATTCTTCTTATAAGGATACAC
259 TCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTTATAAGGATACAC
* * * *
230003 GATATTGATGCTTTGGTTTTGCAAGAAAGGCTTTTTTCTCACCAATTTTTATAATGTTTAAGTTC
324 GATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTC-CACCAATTTTTGTAAAGTCTAAGTTC
* * *
230068 GTGCCTCAAATGAGACCAATATGGATTCTAGTAACGATCTTCATTCATTTTGTGATTAGGCGCTA
388 GTGCCTCAAATGAGACAAACATGGATTCTAGTAACGATCTTCATTCATTTTGTGATTAGGCACTA
230133 TAAACACATTCTCCTCATTAGG
453 TAAACACATTCTCCTCATTAGG
* * *
230155 ATAAATGATATTGATGATTTTCTTTTGCGTGGAAATCTTTTCTTTTCCGTATTTTCCTTAAAATC
1 ATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATC
* * ** ** ** *
230220 AAAATTCACCCCTTAAATGTGATAAGCACCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTG
66 AAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAATCTCCATTCTTTTCAAGATTG
* * * *
230285 GGAACCAATAACACATTCCCATCATTAGGATACATGATATTGATGCTTTGGTGTCGAAAGAAAAG
131 GGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAG
* * * * *
230350 CATTTCTTTCAACCGTTTTTGTTAGAATAAAAGTTTGTCTCTTTAATAAGACGAACATGACTAGT
196 CTTTTCTTTCAACCG-TTTTGTTAGAATCAAAGTTTGTCTCTTCAATAAGACAAACATGAATAGT
* *
230415 CATACTAATCCCTATTCTTTTCAGGATTAGGCACCACAAACATAGTCTTCTTATAAGGATACACG
260 CATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTTATAAGGATACACG
* * * *
230480 ATATTAACGCTTTGGTTTTGCAAGAAAGGCTTTCTTTCCACTAATTTTTGTAAAGTCTAAGTTCG
325 ATATTGATGCTTTGGTTTCGCAAGAAAGGCTTT-TTTCCACCAATTTTTGTAAAGTCTAAGTTCG
* * * * *
230545 TGACTCAAATGAGTCAAACATGGATTCTATTAATGATCTTCATTCATTTTGTGATTAGGCACAAT
389 TGCCTCAAATGAGACAAACATGGATTCTAGTAACGATCTTCATTCATTTTGTGATTAGGCACTAT
* * **
230610 AAACACGTTTTCCTCATTACT
454 AAACACATTCTCCTCATTAGG
* * *
230631 ATAAATGATATTGATGATTTTATTTTCCATGGAAAT-GTTTCTTTTGCCCTATTTTCCTTAAAAT
1 ATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTC-TTTGCCCTATTTTCCTTAAAAT
* * * * *
230695 CAAAGTTCATCCCCTAAATAAGGCAAGCACTGATTCTCGTAACAGTCCCCATTTTTTTCAAGATT
65 CAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAATCTCCATTCTTTTCAAGATT
* ** * ** * * *
230760 GGGAACTAAAAACTTATTCCCTTCATTGGGATACATGACATTGATTATTTGGTTTCGTAAGAAAG
130 GGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAA
230825 GCTTT
195 GCTTT
230830 CTTCCCACCA
Statistics
Matches: 1820, Mismatches: 262, Indels: 38
0.86 0.12 0.02
Matches are distributed among these distances:
474 14 0.01
475 808 0.44
476 984 0.54
477 14 0.01
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.37
Consensus pattern (474 bp):
ATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATC
AAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAATCTCCATTCTTTTCAAGATTG
GGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAG
CTTTTCTTTCAACCGTTTTGTTAGAATCAAAGTTTGTCTCTTCAATAAGACAAACATGAATAGTC
ATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTTATAAGGATACACGA
TATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCACCAATTTTTGTAAAGTCTAAGTTCGTG
CCTCAAATGAGACAAACATGGATTCTAGTAACGATCTTCATTCATTTTGTGATTAGGCACTATAA
ACACATTCTCCTCATTAGG
Found at i:230913 original size:317 final size:317
Alignment explanation
Indices: 230490--231121 Score: 890
Period size: 317 Copynumber: 2.0 Consensus size: 317
230480 ATATTAACGC
* * * * * *
230490 TTTGGTTTTGCAAGAAAGGCTTTCTTTCCACTAATTTTTGTAAAGTCTAAGTTCGTGACTCAAAT
1 TTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTATTATAAAGTCTAAGTTCATGACTCAAAT
* * * *
230555 GAGTCAAACATGGATTCTATTAATGATCTTCATTCATTTTGTGATTAGGCACAATAAACACGTT-
66 GAGACAAACATGGATTCTAGTAATGATCTTCATTAATTTTGTGATTAGGCACAATAAACACATTC
* * * * *
230619 TTCCTCATTACTATAAATGATATTGATGATTTTATTTTCCATGGAAATGTTTCTTTTGCCCTATT
131 TCCCT-ATTACGATAAATAATATTGACGATTTTATTTTCCATGGAAATGTTTCCTTTGCCCTATT
* * * * * *
230684 TTCCTTAAAATCAAAGTTCATCCCCTAAATAAGGCAAGCACTGATTCTCGTAACAGTCCCCATTT
195 TTCCTTAAAATAAAAGTTCATCCCATAAATAAGACAAGCACTGATTCTCGTAACAGTCACCACTC
* **
230749 TTTTCAAGATTGGGAACTAAAAACTTATTCCCTTCATT-GGGATACATGACATTGATTA
260 TTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGG-TACATGACATTGATTA
* * *
230807 TTTGGTTTCGTAAGAAAGGCTTTCTTCCCACCAATTATTATAATGTCTAAGTTCATGCCTCAAAT
1 TTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTATTATAAAGTCTAAGTTCATGACTCAAAT
*
230872 GAGACAAACATGGATTCTAGTAATGATCTTCATTAATTTTGTGATTAGGCACTATAAACACATTC
66 GAGACAAACATGGATTCTAGTAATGATCTTCATTAATTTTGTGATTAGGCACAATAAACACATTC
* * * * * *
230937 TCCCTATTAGGGTAAATAATATTGACGATTTTCTTTTGCGTGGAAATGTTTCCTTTGCCTTATTT
131 TCCCTATTACGATAAATAATATTGACGATTTTATTTTCCATGGAAATGTTTCCTTTGCCCTATTT
* * *
231002 TCCTTAAAATAAAAGTTCATCCCATTAATAAGACAAGCATTGATTCTTGTAACAGTCACCACTCT
196 TCCTTAAAATAAAAGTTCATCCCATAAATAAGACAAGCACTGATTCTCGTAACAGTCACCACTCT
*
231067 TTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGGTGCATGACATTGAT
261 TTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGGTACATGACATTGAT
231122 GCTTGATGTC
Statistics
Matches: 275, Mismatches: 38, Indels: 4
0.87 0.12 0.01
Matches are distributed among these distances:
317 268 0.97
318 7 0.03
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.37
Consensus pattern (317 bp):
TTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTATTATAAAGTCTAAGTTCATGACTCAAAT
GAGACAAACATGGATTCTAGTAATGATCTTCATTAATTTTGTGATTAGGCACAATAAACACATTC
TCCCTATTACGATAAATAATATTGACGATTTTATTTTCCATGGAAATGTTTCCTTTGCCCTATTT
TCCTTAAAATAAAAGTTCATCCCATAAATAAGACAAGCACTGATTCTCGTAACAGTCACCACTCT
TTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGGTACATGACATTGATTA
Found at i:231876 original size:476 final size:476
Alignment explanation
Indices: 230807--236640 Score: 7056
Period size: 476 Copynumber: 12.3 Consensus size: 476
230797 ACATTGATTA
* * *
230807 TTTGGTTTCGTAAGAAAGGCTTTCTTCCCACCAATTATTATAATGTCTAAGTTCATGCCTCAAAT
1 TTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTCGTGCCTCAAAT
*
230872 GAGACAAACATGGATTCTAGTAATGATCTTCATTAATTTTGTGATTAGGCACTATAAACACATTC
66 GAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC
* *
230937 TCC-CTATTAGGGTAAATAATATTGACGATTTTCTTTTGCGTGGAAATGTTTCCTTTG-CCTTAT
131 TCCTCT-TTAGGGTAAATGATATTGACGATTTTCTTTTGCATGGAAATGTTTCCTTTGCCCTT-T
* * ** * * *
231000 TTTCCTTAAAATAAAAGTTCATCCCATTAATAA-GACAAGCATTGATTCTTGTAACAGTCACCAC
194 TTTCCTTAAAATCAAAGTTCATCCC-TTAAAAATGACAAGCATTGATTCTCATAACAATCTCCAT
* * * *
231064 TCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGGTGCATGACATTGATGC-TTGA
258 TCTTTTCAAGATTGGGAACCAAAAACACAATCCCTTCATTAGGATACATGACATTGATGCTTTGG
* * * * * *
231128 TGTCGCAAGAAAAGCTTTTCTTTGAATCGTTTTTGTTAGAATCAAAGTTTATCTCTTCAATAAGG
323 TGTCGCTAGAAAAGCTTTTCTTTCAACCGTTTTTGTTAGAATCAAAGTTTGTCTCTTTAATAAGA
* * *
231193 CAAACATGAATAGTCATACTAAT-CCTATTCTTTTTAAGATTAGGCACCATAAACATAGTCTTCT
388 CAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCT
*
231257 TATAAGGATACACTATATTGACGC
453 TATAAGGATACACGATATTGACGC
* *
231281 TTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTATATTGTCTAAGTTCGTACCTCAAAT
1 TTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTCGTGCCTCAAAT
* *
231346 AAGACAAACATAGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC
66 GAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC
* *
231411 TCCTCTTTAGGGCAAATGATATTGACAATTTTCTTTTGCATGGAAATGTTTCCTTTGCCCTTTTT
131 TCCTCTTTAGGGTAAATGATATTGACGATTTTCTTTTGCATGGAAATGTTTCCTTTGCCCTTTTT
* *
231476 TCCTTAAAATCAAAGTTCATCCCTTAAAAAATG-TAAGCATTGATTCTCGTAACAATCTCCATTC
196 TCCTTAAAATCAAAGTTCATCCCTT-AAAAATGACAAGCATTGATTCTCATAACAATCTCCATTC
* * * *
231540 TTTTCATGACTAGGAACCAAAAACACAATCCTTTCATTAGGATACATGACATTGATGCTTTGGTG
260 TTTTCAAGATTGGGAACCAAAAACACAATCCCTTCATTAGGATACATGACATTGATGCTTTGGTG
* * * *
231605 TCGCTAGAAAAGCTTTTCTTTCAATCATTTTTGTTAGAACCAAAGTTTGTCTCTTTAATAAGATA
325 TCGCTAGAAAAGCTTTTCTTTCAACCGTTTTTGTTAGAATCAAAGTTTGTCTCTTTAATAAGACA
* * * *
231670 AACTTGAATAGTCATACTAATCCCCATTCTTTTCATGATTAAGCACCATAAACATAGTTTTCTTA
390 AACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTTA
*
231735 TAAGGATACACGATATTGACGG
455 TAAGGATACACGATATTGACGC
* * * * *
231757 TTTAGTTTTGTAAGAAAGGCTTTCTTCCCACCAATTTTTATATTGTCTAAGTTCGTACCTCAAAT
1 TTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTCGTGCCTCAAAT
* * *
231822 AAGACAAACATAGATCCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC
66 GAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC
* *
231887 TCCTCTTTAGGGCAAATGATATTGACAATTTTCTTTTGCATGGAAATGTTTCCTTTGCCCTTTTT
131 TCCTCTTTAGGGTAAATGATATTGACGATTTTCTTTTGCATGGAAATGTTTCCTTTGCCCTTTTT
* * * * *
231952 TCCTTAAAATCAAAGTTCATCACTTAAATAA-GGCAAGCATTGATTATCGTAACAATCTCCTTTC
196 TCCTTAAAATCAAAGTTCATCCCTTAAA-AATGACAAGCATTGATTCTCATAACAATCTCCATTC
* *** *
232016 TTTTCATGACAAGGAACCAAAAACACAATCCTTTCATTAGGATACATGACATTGATGCTTTGGTG
260 TTTTCAAGATTGGGAACCAAAAACACAATCCCTTCATTAGGATACATGACATTGATGCTTTGGTG
* * * * *
232081 TCGCTAGAAAAGCTTTTCTTTCAATCGTTTTTGTTAGAACCAAAGTTTGTTTCTTTAATAAAATA
325 TCGCTAGAAAAGCTTTTCTTTCAACCGTTTTTGTTAGAATCAAAGTTTGTCTCTTTAATAAGACA
* * * *
232146 AACTTGAATAGTCATACTAATCCCCATTCTTTTCATGATTAAGCACCATAAACATAGTTTTCTTA
390 AACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTTA
232211 TAAGGATACACGATATTGACGC
455 TAAGGATACACGATATTGACGC
* * * * *
232233 TTTAGTTTTGTAAGAAAGGCTTTCTTCCCACCAATTTTTATATTGTCTAAGTTCGTACCTCAAAT
1 TTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTCGTGCCTCAAAT
* * *
232298 AAGACAAACATAGATCCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC
66 GAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC
* *
232363 TCCTCTTTAGGGCAAATGATATTGACAATTTTCTTTTGCATGGAAATGTTTCCTTTGCCCTTTTT
131 TCCTCTTTAGGGTAAATGATATTGACGATTTTCTTTTGCATGGAAATGTTTCCTTTGCCCTTTTT
* * *
232428 TCCTTAAAATCAAAGTTCATCCCTTAAAAAATG-TAAGCATTGATTCTCGTAATAATCTCCATTC
196 TCCTTAAAATCAAAGTTCATCCCTT-AAAAATGACAAGCATTGATTCTCATAACAATCTCCATTC
* *
232492 TTTTCAAGATTGGGAACCAAAAACACAATCCTTTCATTAGGATACATGATATTGATGCTTTGGTG
260 TTTTCAAGATTGGGAACCAAAAACACAATCCCTTCATTAGGATACATGACATTGATGCTTTGGTG
* * * * *
232557 TCACTAGAAAAGCTTTTCTTTCAACCATTTTTGTTAGAACCGAAGTTTGTCTCTTTAATAAGATA
325 TCGCTAGAAAAGCTTTTCTTTCAACCGTTTTTGTTAGAATCAAAGTTTGTCTCTTTAATAAGACA
* * * * *
232622 AACTTGAATAGTCATACTAATCCCCATT-TGTTTCATGATTAAGCATCATAAACATAGTTTTCTT
390 AACATGAATAGTCATACTAATCCCCATTCT-TTTCAGGATTAGGCACCATAAACATAGTCTTCTT
232686 ATAAGGATACACGATATTGACGC
454 ATAAGGATACACGATATTGACGC
* * * *
232709 TTTAGTTTTGTAAGAAAGGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTCGTGCCTCAAAA
1 TTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTCGTGCCTCAAAT
* * * * * *
232774 CAGATAAACGTTGATTCTAGTAATGATCCTCACTCATTTTGTGATTAGGCACTATAAACACATTC
66 GAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC
* * * * *
232839 TCCTCATTATGGTAAATGATATTGACTATTTTTTTTTGCATCGAAATGTTTCCTTTGCCCTATTT
131 TCCTCTTTAGGGTAAATGATATTGACGATTTTCTTTTGCATGGAAATGTTTCCTTTGCCCT-TTT
* * * * *
232904 TT-CATAAAATCAAAGTTCATCCCTTAAAAAATG-TAAGCATTGATTCTCGTAATAATTTCCATT
195 TTCCTTAAAATCAAAGTTCATCCCTT-AAAAATGACAAGCATTGATTCTCATAACAATCTCCATT
*
232967 CTTTTCAAGATTGGGAACCAAAAACACAATCCCTTCATTAGGATACATGACATTGATGCTGTGGT
259 CTTTTCAAGATTGGGAACCAAAAACACAATCCCTTCATTAGGATACATGACATTGATGCTTTGGT
* * *
233032 ATCGCTAGAAAAGCTTTTCTTTCAACCGTTTTTGTTAGAGTCAAAGTTTGTCTCTTCAATAAGAC
324 GTCGCTAGAAAAGCTTTTCTTTCAACCGTTTTTGTTAGAATCAAAGTTTGTCTCTTTAATAAGAC
* *
233097 GAAA-ATGAATAGTCATACTAATCCCCATTCTTTTTAGGATTAGGTACCATAAGA-ATAGTCTTC
389 -AAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAA-ACATAGTCTTC
* * * * *
233160 TTTTATGGATATATGATATTGATGC
452 TTATAAGGATACACGATATTGACGC
* * * * ***
233185 TTTGGTTTCACTAGAAAGGCTTTCTTCCCACCAATTTTTATATTGTCTAAATTCGTGAGGCAAAT
1 TTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTCGTGCCTCAAAT
* * * * **
233250 GAGACAAACTTGGATTCTAGTACTCATCTTCATTCTTTTTGTGATTAGGCACTGCAAACACATTC
66 GAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC
* * * *
233315 TCCTCATTAGGGTAAACGATATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTCGCCCTTTTT
131 TCCTCTTTAGGGTAAATGATATTGACGATTTTCTTTTGCATGGAAATGTTTCCTTTGCCCTTTTT
* * * * * * * *
233380 TCCTTAAAACCAAGGTTCATCTCTTAAACAA-GGCAAGCGTTGA-T-T-GT-----TGT--A-AC
196 TCCTTAAAATCAAAGTTCATCCCTTAAA-AATGACAAGCATTGATTCTCATAACAATCTCCATTC
* * * * *
233433 -TTTCATGAATAGGAACCAAAAACACAATCCATTCATTAGGATACATGACATTGATGTTTTGGTG
260 TTTTCAAGATTGGGAACCAAAAACACAATCCCTTCATTAGGATACATGACATTGATGCTTTGGTG
* * *
233497 TCGCTAGAAAAGCTTTTCTTTCAACCGTTTTTGTCATAATCAAAGTTTGTCTCTTTAATAAGATA
325 TCGCTAGAAAAGCTTTTCTTTCAACCGTTTTTGTTAGAATCAAAGTTTGTCTCTTTAATAAGACA
* * * *
233562 AACATAAATAGTCATAATAATCCCCATTCCTTTT-AGGATTAGGCACCATAAGCATAGCCTTCTT
390 AACATGAATAGTCATACTAATCCCCATT-CTTTTCAGGATTAGGCACCATAAACATAGTCTTCTT
* * * * *
233626 ACACGGGTACACTATATTGATGC
454 ATAAGGATACACGATATTGACGC
*
233649 TTTGGTTTCGCAAGAAAGGCTTTCTTCCCACAAATTTTTATAATGTCTAAGTT--T--C-C---T
1 TTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTCGTGCCTCAAAT
* * * *
233706 -A-ACAAACATGGATTTTAGCAATGGTCTTCATTCATTTTGTGATTAGGCACTATAAACGCATTC
66 GAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC
* * *
233769 TCCTCATTAGGGTAAATGATATTGATGATTTTCTTTTGCATGGAAAAGTTTCCTTTG-CCTTATT
131 TCCTCTTTAGGGTAAATGATATTGACGATTTTCTTTTGCATGGAAATGTTTCCTTTGCCCTT-TT
* * * * * *
233833 TTCCTTAAAATCAAAGTTCATCCCTTAAATAGGACAAGCACTGATTATCATAACAGTCCCCATTC
195 TTCCTTAAAATCAAAGTTCATCCCTTAAAAATGACAAGCATTGATTCTCATAACAATCTCCATTC
*** * *
233898 TTTTCAAGATTGGGAACCAAAAACATGTTCCCTTCGTTAGGATACATGGCATTGATGCTTTAGG-
260 TTTTCAAGATTGGGAACCAAAAACACAATCCCTTCATTAGGATACATGACATTGATGCTTT-GGT
* * * * * * * * *
233962 ATCGCAAGAAAAGCTATTCATTCCATCGTTTTTGATAGAATCAAAATTTGTCTCTTAAATAAGAC
324 GTCGCTAGAAAAGCTTTTCTTTCAACCGTTTTTGTTAGAATCAAAGTTTGTCTCTTTAATAAGAC
* * * *
234027 AAACATGAGTAGTCATACTAATCCCCATTCCTTTCAGGATTAGGCACCATAAACATAGTATTCTC
389 AAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTT
* *
234092 ATTAA-GATAGACGATATTGATGC
454 A-TAAGGATACACGATATTGACGC
* * ** * * * ** *
234115 TTTAGTTTCACAAGAAAGGCTTT-TTCCTTCTAATTTTTGTAAAGTCTAAGTTTATGCCTTAAAT
1 TTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTCGTGCCTCAAAT
* * * ** * **
234179 GAGTCAAACATCGATTTTAGTAATGATCTTCATTCATTTCATGATTAGACAAAATAAACACATTC
66 GAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC
* * * ** * * * * *
234244 TCCTCATTAGGATAAATGGTGCTGAAGATTTTCTTTTGCAAGGAAATCTTTTCTTTGCCCTATTT
131 TCCTCTTTAGGGTAAATGATATTGACGATTTTCTTTTGCATGGAAATGTTTCCTTTGCCCTTTTT
* * * * * *
234309 TCCTTAAAATCAAAATTCATCCCTTGAATATGACAAGCATCGATTCTCATCACAGTCTCCATTCT
196 TCCTTAAAATCAAAGTTCATCCCTTAAAAATGACAAGCATTGATTCTCATAACAATCTCCATTCT
* ** ** * *
234374 TTTCAAGATTGGGAACCAAGAATGCGTTCCCTTTATTAGGATACATCACATTGATGCTTTGGTGT
261 TTTCAAGATTGGGAACCAAAAACACAATCCCTTCATTAGGATACATGACATTGATGCTTTGGTGT
* * **
234439 CGCAAGAAAAGCTTTTCTTTCAACCG-TTTTGATAGAATCAAAGTTTGTCTCTCAAATAAGACAA
326 CGCTAGAAAAGCTTTTCTTTCAACCGTTTTTGTTAGAATCAAAGTTTGTCTCTTTAATAAGACAA
* * * * * *
234503 ACATGAATAGTCATACCAATCCCCAATCTTTTTAGGATTAGGCACCATACACATAATCTACTTAT
391 ACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTTAT
**
234568 AAAAATACACGATATT-ATCGC
456 AAGGATACACGATATTGA-CGC
* * * * * * *
234589 TTTGGTTTCACAGGAAAGGCATTCTTCCGACCAATTTTTACAATGTTTAAGTTCATGCCTCAAAT
1 TTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTCGTGCCTCAAAT
* *
234654 GAGACAAACATGGATTCTAGTAACGATCTTCATTCATTTTGTGATTAGGTACTAT-AA-ACA-TC
66 GAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC
* * * * * * * *
234716 TCCTCTTTAGGATAAATGATA-T-ACTGATTCTCTTTTACGTGGATATCTTTTCTTTGCCCTATT
131 TCCTCTTTAGGGTAAATGATATTGAC-GATTTTCTTTTGCATGGAAATGTTTCCTTTGCCCTTTT
* * ** * * **
234779 TTCCTTAAAATCAAAATTCACCCCTTAAATTTGACAAGCATCGACTCTCATAACTGTCTCCATTC
195 TTCCTTAAAATCAAAGTTCATCCCTTAAAAATGACAAGCATTGATTCTCATAACAATCTCCATTC
* * *
234844 TTTTCAAGATTGGGAACTAATAACACATTCCCTTCATTAGGATACATGACATTGAAT-CTTTGGT
260 TTTTCAAGATTGGGAACCAAAAACACAATCCCTTCATTAGGATACATGACATTG-ATGCTTTGGT
* * *
234908 GTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCCAAGTTTGTCT-TTTAAATAAGA
324 GTCGCTAGAAAAGCTTTTCTTTCAACCGTTTTTGTTAGAATCAAAGTTTGTCTCTTT-AATAAGA
* *
234972 CAAACCTGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTACT
388 CAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCT
* * *
235037 TATAAGGATACACTATATGGACAC
453 TATAAGGATACACGATATTGACGC
* * *
235061 TTTTGTTTCGCAAGAAAGGCTTTCTTCCAACCAATTTTTGTGAA-GTCTAAG-TCTGTGCCTCAA
1 TTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTAT-AATGTCTAAGTTC-GTGCCTCAA
** * * * *
235124 ACAAGTCAAACATGGATTCTAGTAATGATCTTCAGTCATTTTGTGATTACGCACTATAAACACCT
64 ATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACAT
** * * * * * *
235189 TCTCCTCAGTAGGATAAATGTTATTGATGATTTTCTTTTGCGTGGAAATCTTTTCTTTG-CCTTA
129 TCTCCTCTTTAGGGTAAATGATATTGACGATTTTCTTTTGCATGGAAATGTTTCCTTTGCCCTT-
* * * * *
235253 TTTTCCTTAAAATCAAAATTCACCCCTTAAATATGACAAGCATCT-ATTCTCATAACAGTCTCTA
193 TTTTCCTTAAAATCAAAGTTCATCCCTTAAAAATGACAAGCAT-TGATTCTCATAACAATCTCCA
* * * * * * * *
235317 ATATTTTCAACATTGGGAA-AAAATAACACATTTCCTTCATTTGGATACATGACATTAATGCTTT
257 TTCTTTTCAAGATTGGGAACCAAA-AACACAATCCCTTCATTAGGATACATGACATTGATGCTTT
* * * *
235381 GGTGTCACAAGGAAAA-CTTTTCTTTCAACTGTTTTTATTAGAATCAAAGTTTGTCTCTTTAATA
321 GGTGTCGCTA-GAAAAGCTTTTCTTTCAACCGTTTTTGTTAGAATCAAAGTTTGTCTCTTTAATA
* ** **
235445 AGACAAACATGAATAGTCATACTAATCCCCATTCTTTTTAGGATTATTCACCCCAAACATAGTCT
385 AGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCT
* * *
235510 TCTCT-TAAAGATACACAATATTGACAC
450 TCT-TATAAGGATACACGATATTGACGC
* * * * * * * *
235537 TTTGGATTCACAATAAAAGCTTTCTTCCCACCAATTTTTGTAAAGTCTTAGTTTGTGCCTCAAAT
1 TTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTCGTGCCTCAAAT
* * *
235602 GAGTCAAACATGGATTCTACTAATGATCTCCATTCATTTTGTGATTAGGCA-TAATAAACACATT
66 GAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACT-ATAAACACATT
* * * * * * *
235666 CTCCT-TGTTAGGATAAATGATATTGATGATTTTTTTTTTGCGTAGAAATCTTTTCTTTG-CCTT
130 CTCCTCT-TTAGGGTAAATGATATTGACGA-TTTTCTTTTGCATGGAAATGTTTCCTTTGCCCTT
* * * *
235729 ATTTTCCTTAAAATCAAAATTCATCCCCTAAATATGACAAGC-TTCGATTCTCATAACAATCTCT
193 -TTTTCCTTAAAATCAAAGTTCATCCCTTAAAAATGACAAGCATT-GATTCTCATAACAATCTCC
* * ** * * * *
235793 ATTCTTTTCATGATTGGGAACCAAGAATGCATTCCCTTCATTACGATACATGACATCGATGCTTC
256 ATTCTTTTCAAGATTGGGAACCAAAAACACAATCCCTTCATTAGGATACATGACATTGATGCTTT
* * *
235858 GGTGTCG-TAAGAAAAGCTATTT-TTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAAT
321 GGTGTCGCT-AGAAAAGCT-TTTCTTTCAACCGTTTTTGTTAGAATCAAAGTTTGTCTCTTTAAT
* * *
235921 AAGACAAATATGAATAGTCATACTCATCCCCATTCCTTTCAGGATTAGGCACCATAAACATAGTC
384 AAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTC
* * *
235986 TACTTATAAGGATATACGATATTGATGC
449 TTCTTATAAGGATACACGATATTGACGC
* *
236014 TTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTATAATATCTATGTTCGTGCCTCAAAT
1 TTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTCGTGCCTCAAAT
* * * *
236079 GAGATAAACAT-G--TCTAGTAATGATCTTCCTTCATTTTGTCATTAAGCACTATAAACACATTC
66 GAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC
* * *
236141 TCCCCATTAGGGTAAATGATATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTG-CCTTATT
131 TCCTCTTTAGGGTAAATGATATTGACGATTTTCTTTTGCATGGAAATGTTTCCTTTGCCCTT-TT
* * **
236205 TTCCATAAAATCAAAGTTCATCTCTTAAATAA-GGTAAGCATTGATTCTCATAACAATCTCCATT
195 TTCCTTAAAATCAAAGTTCATCCCTTAAA-AATGACAAGCATTGATTCTCATAACAATCTCCATT
*
236269 CTTTTCGAGATTGGGAACCAAAAACACAATCCCTTCATTAGGATACATGACATTGATGCTTTGGT
259 CTTTTCAAGATTGGGAACCAAAAACACAATCCCTTCATTAGGATACATGACATTGATGCTTTGGT
* * * * *
236334 GTCGCTAGAAAAGCTTTTCTTTCAACCATTTTTGTTTGAATCAAAGTTAGTCCCTTTAATAAGAT
324 GTCGCTAGAAAAGCTTTTCTTTCAACCGTTTTTGTTAGAATCAAAGTTTGTCTCTTTAATAAGAC
* * * * *
236399 AAACGTGAATAGTCATACTAATCCCCATTCTTTTCAAGATTAGGCACCACAAACATAGTTTTCTC
389 AAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTT
* ** *
236464 ATAAGGTTACATAATATTGATGC
454 ATAAGGATACACGATATTGACGC
* ** * * *
236487 TTTGATTTCGCTGGAAAGGCTTTTTTCCCAGCAATTTTTATGATGTCTAAGCTT-GTGCCTCAAA
1 TTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTATAATGTCTAAG-TTCGTGCCTCAAA
* * ** **
236551 TGAGACCAAC-TTGATTCTAGTAATGATCTTCATTCATTTTAAGATTAGGCACTATAAACGTATT
65 TGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATT
* *
236615 CTCCTCTTTAGGATACATGATATTGA
130 CTCCTCTTTAGGGTAAATGATATTGA
236641 TGCTTTGGTG
Statistics
Matches: 4711, Mismatches: 555, Indels: 187
0.86 0.10 0.03
Matches are distributed among these distances:
453 5 0.00
454 143 0.03
455 2 0.00
456 2 0.00
457 1 0.00
459 1 0.00
462 2 0.00
463 3 0.00
464 230 0.05
465 35 0.01
466 193 0.04
467 4 0.00
468 2 0.00
469 1 0.00
470 1 0.00
471 178 0.04
472 230 0.05
473 345 0.07
474 482 0.10
475 512 0.11
476 1987 0.42
477 347 0.07
478 5 0.00
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.37
Consensus pattern (476 bp):
TTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTCGTGCCTCAAAT
GAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC
TCCTCTTTAGGGTAAATGATATTGACGATTTTCTTTTGCATGGAAATGTTTCCTTTGCCCTTTTT
TCCTTAAAATCAAAGTTCATCCCTTAAAAATGACAAGCATTGATTCTCATAACAATCTCCATTCT
TTTCAAGATTGGGAACCAAAAACACAATCCCTTCATTAGGATACATGACATTGATGCTTTGGTGT
CGCTAGAAAAGCTTTTCTTTCAACCGTTTTTGTTAGAATCAAAGTTTGTCTCTTTAATAAGACAA
ACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTTAT
AAGGATACACGATATTGACGC
Found at i:236453 original size:159 final size:158
Alignment explanation
Indices: 236259--236842 Score: 432
Period size: 159 Copynumber: 3.7 Consensus size: 158
236249 TTCTCATAAC
* * * * * * * * *
236259 AATCTCCATTCTTTTCGAGATTGGGAACCAAAAACACAATCCCTTCATTAGGATACATGACATTG
1 AATCCCCATTCTTTTCAAGATTAGGCACCACAAACATAGT-CCTTCATAAGGATACATGATATTG
*
236324 ATGCTTTGGTGTCGCTAGAAAAGCTTTTCTTTCAACCATTTTTGTTTGAATCAAAGTTAGTCCCT
65 ATGCTTTGGTGTCGCTAGAAAAGCTTTTCTTTCCACCATTTTTGTTTGAATCAAAGTTAGTCCCT
* *
236389 TTAATAAGATAAACGTGAATAGTCATACT
130 TTAATAAGACAAACATGAATAGTCATACT
** * *
236418 AATCCCCATTCTTTTCAAGATTAGGCACCACAAACATAGTTTTCTCATAAGGTTACATAATATTG
1 AATCCCCATTCTTTTCAAGATTAGGCACCACAAACATAGTCCT-TCATAAGGATACATGATATTG
* * * * * * * * * * *
236483 ATGCTTTGATTTCGCTGGAAAGGCTTTT-TTCCCAGCAATTTT-TATGATGTCTAAGCTT-GTGC
65 ATGCTTTGGTGTCGCTAGAAAAGCTTTTCTTTCCACCATTTTTGTTTGA-ATCAAAG-TTAGTCC
** * * * *
236545 CTCAAATGAGACCAACTTG-AT--TCTAGTAAT
128 CTTTAATAAGACAAACATGAATAGTC-A-TACT
* ** * * * * * * *
236575 GATCTTCATTCATTTT-AAGATTAGGCACTATAAACGTATTCTCCTCTTTAGGATACATGATATT
1 AATCCCCATTC-TTTTCAAGATTAGGCACCACAAACATAGTC-CTTCATAAGGATACATGATATT
** * * * * * *
236639 GATGCTTTGGTGTCGAAAGGAAAGATTTTCTTTCCACCGTTTTTGTTAGAATCAAAATTTA-TCT
64 GATGCTTTGGTGTCGCTAGAAAAGCTTTTCTTTCCACCATTTTTGTTTGAATC-AAAGTTAGTCC
* * *
236703 TTTTAATAAGACGAACATGAATAGTCATACA
128 CTTTAATAAGACAAACATGAATAGTCATACT
* * *
236734 AATCCCCATTCTTTTCAGGATTAGGCACCTCAAACATAGT-CTTCTATAAGGATACACGATATTG
1 AATCCCCATTCTTTTCAAGATTAGGCACCACAAACATAGTCCTTC-ATAAGGATACATGATATTG
* * * ** *
236798 ATGCTTTGGTTTTGCAAGAAGGGC-TTTCTTCCCACCAATTTTTGT
65 ATGCTTTGGTGTCGCTAGAAAAGCTTTTCTTTCCACC-ATTTTTGT
236843 AAAGTGTAAG
Statistics
Matches: 313, Mismatches: 95, Indels: 35
0.71 0.21 0.08
Matches are distributed among these distances:
155 2 0.01
156 1 0.00
157 88 0.28
158 108 0.35
159 111 0.35
160 1 0.00
161 2 0.01
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.36
Consensus pattern (158 bp):
AATCCCCATTCTTTTCAAGATTAGGCACCACAAACATAGTCCTTCATAAGGATACATGATATTGA
TGCTTTGGTGTCGCTAGAAAAGCTTTTCTTTCCACCATTTTTGTTTGAATCAAAGTTAGTCCCTT
TAATAAGACAAACATGAATAGTCATACT
Found at i:236953 original size:316 final size:316
Alignment explanation
Indices: 236290--236954 Score: 841
Period size: 316 Copynumber: 2.1 Consensus size: 316
236280 TGGGAACCAA
* * * ** *
236290 AAACACAATCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCTAGAAAAGCTTTTCTT
1 AAACACATTCTCTTCATTAGGATACATGATATTGATGCTTTGGTGTCGAAAGAAAAGATTTTCTT
* * * *
236355 TCAACCATTTTTGTTTGAATCAAAGTTAGTCCCTTTAATAAGATAAACGTGAATAGTCATACTAA
66 TCAACCATTTTTGTTAGAATCAAAGTTAGTCCCTTTAATAAGACAAACATGAATAGTCATACAAA
* * *
236420 TCCCCATTCTTTTCAAGATTAGGCACCACAAACATAGTTTTCTCATAAGGTTACATAATATTGAT
131 TCCCCATTCTTTTCAAGATTAGGCACCACAAACATAGTCTTCTCATAAGGATACACAATATTGAT
** * * * * *
236485 GCTTTGATTTCGCTGGAAAGGCTTTTTTCCCAGCAATTTTTATGATGTCTAAGCTTGTGCCTCAA
196 GCTTTGATTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTATAAAGTCTAAGCTTATGCCTCAA
* * *
236550 ATGAGACCAACTTGATTCTAGTAATGATCTTCATTCATTTTAAGATTAGGCACTAT
261 ATGAGACAAACTGGATTCTAGTAATGACCTTCATTCATTTTAAGATTAGGCACTAT
** * * *
236606 AAACGTATTCTCCTCTTTAGGATACATGATATTGATGCTTTGGTGTCGAAAGGAAAGATTTTCTT
1 AAACACATTCTCTTCATTAGGATACATGATATTGATGCTTTGGTGTCGAAAGAAAAGATTTTCTT
* * * ** *
236671 TCCACCGTTTTTGTTAGAATCAAAATTTA-TCTTTTTAATAAGACGAACATGAATAGTCATACAA
66 TCAACCATTTTTGTTAGAATC-AAAGTTAGTCCCTTTAATAAGACAAACATGAATAGTCATACAA
* * *
236735 ATCCCCATTCTTTTCAGGATTAGGCACCTCAAACATAGTCTTCT-ATAAGGATACACGATATTGA
130 ATCCCCATTCTTTTCAAGATTAGGCACCACAAACATAGTCTTCTCATAAGGATACACAATATTGA
* * * * *
236799 TGCTTTGGTTTTGCAAGAAGGGCTTTCTTCCCACCAATTTTTGTAAAGTGTAAG-TTCATGCCTC
195 TGCTTTGATTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTATAAAGTCTAAGCTT-ATGCCTC
* * **
236863 GAATGAGTCAAACATGGATTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCACTAT
259 AAATGAGACAAAC-TGGATTCTAGTAATGACCTTCATTCATTTTAAGATTAGGCACTAT
* * *
236922 AAACACCTTCTCTTCATTAAGATAAATGATATT
1 AAACACATTCTCTTCATTAGGATACATGATATT
236955 AATGATTTTA
Statistics
Matches: 293, Mismatches: 53, Indels: 6
0.83 0.15 0.02
Matches are distributed among these distances:
314 2 0.01
315 76 0.26
316 209 0.71
317 6 0.02
ACGTcount: A:0.30, C:0.18, G:0.15, T:0.36
Consensus pattern (316 bp):
AAACACATTCTCTTCATTAGGATACATGATATTGATGCTTTGGTGTCGAAAGAAAAGATTTTCTT
TCAACCATTTTTGTTAGAATCAAAGTTAGTCCCTTTAATAAGACAAACATGAATAGTCATACAAA
TCCCCATTCTTTTCAAGATTAGGCACCACAAACATAGTCTTCTCATAAGGATACACAATATTGAT
GCTTTGATTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTATAAAGTCTAAGCTTATGCCTCAA
ATGAGACAAACTGGATTCTAGTAATGACCTTCATTCATTTTAAGATTAGGCACTAT
Found at i:238309 original size:474 final size:473
Alignment explanation
Indices: 236622--238516 Score: 2381
Period size: 474 Copynumber: 4.0 Consensus size: 473
236612 ATTCTCCTCT
* * * * * * *
236622 TTAGGATACATGATATTGATGCTTTGGTGTCGAAAGGAAAGATTTTCTTTCCACCGTTTTTGTTA
1 TTAGGATACATGACATTGATGCTTTGGTATCGCAAGAAAAGCTATTCTTTCCACCGTTTTTGATA
* * * *
236687 GAATCAAAATTTATCTTTTTAATAAGACGAACATGAATAGTCATACAAATCCCCATTCTTTTCAG
66 GAATCAAAGTTTGTCTTTTTAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAG
* * *
236752 GATTAGGCACCTCAAACATAGTCTTCT-ATAAGGATACACGATATTGATGCTTTGGTTTTGCAAG
131 GATTAGGCACCACAAACATAGTCTTCTCATAAGGATACACGATATTGACGCTTTGGTTTCGCAAG
* * * *
236816 AAGGGCTTTCTTCCCACCAATTTTTGTAAAGTGTAAGTTCATGCCTCGAATGAGTCAAACATGGA
196 AAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTTATGCCTCAAATGAGTCAAACATGGA
* * *
236881 TTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCACTATAAACACCTTCT-CTTCATTAAGAT
261 TTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTT-ATT-AGAG
*
236945 AAATGATATTAATGATTTTATTTTGCATGAAAATGTTTCCTTTGCCCTATTTTCCTTAAAATCAA
324 AAATGATATTAATGATTTTATTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCTTAAAATCAA
* * * *** *
237010 AGTTCATCTCTTAAATAAGGTAAGTATTGATTCTCGTAATTGTCCCATTCCTCTCAAAATTTGGA
389 AGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAATCCCATTCCT-TCAAAATTGGGA
237075 ACCAAAAACATATTCCCTTCA
453 ACCAAAAACATATTCCCTTCA
* * * *
237096 TTAGGACACATGACATTGACT-CATTGGGATCGCAAGAAAAGCTATTCTTTCCACTGTTTTTGAT
1 TTAGGATACATGACATTGA-TGCTTTGGTATCGCAAGAAAAGCTATTCTTTCCACCGTTTTTGAT
* * * * * * *
237160 AGAATTAAAGTTTGTCTCTTAAATAAGATAAACTTGAATCGTCATACTAATCCCTATTCTTTTCA
65 AGAATCAAAGTTTGTCTTTTTAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCA
* * * * *
237225 GGATTAGGCACCATAAACATTGTCTTCTCATTAA-GATAGACAATATTGATGCTTTGGTTTCGCA
130 GGATTAGGCACCACAAACATAGTCTTCTCA-TAAGGATACACGATATTGACGCTTTGGTTTCGCA
* *
237289 AGAAAGGCTTTCTT-CC-CCAATTTTTGTAAAGTCTAAGTTTATGCCTCAAATTAGTTAAACATG
194 AGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTTATGCCTCAAATGAGTCAAACATG
* * * * * * *
237352 GATTCTAGTAATGATCTCCATTCACTTTGTAATTAGACACAATAAACACATTCTCGTCATTAGGA
259 GATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTTATTA-GA
* * ** * * *
237417 TAAATGATATTGATGATTTTCCTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCA
323 GAAATGATATTAATGATTTTATTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCTTAAAATCA
* * * *
237482 AAATTCATCCCTTAAATATGACAAGCATTGATTCTCGTAA-AGATCTCCATTCCTTTCAAGATTG
388 AAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACA-ATC-CCATTCC-TTCAAAATTG
* * *
237546 GGAACCAAGAACACATTCCCTTCT
450 GGAACCAAAAACATATTCCCTTCA
* * * * * * * *
237570 TTAAGATACATGTCATTGATGCTTTTGTGTCACAAGAAAAGCTTTTCTTTCAACTG-TTTTGATA
1 TTAGGATACATGACATTGATGCTTTGGTATCGCAAGAAAAGCTATTCTTTCCACCGTTTTTGATA
* * * * *
237634 TAATCAAAGTTTGTCTTGTTAGTAAGATAAACATGAATAGTCATACTAATCCCCATTCTTTTCAA
66 GAATCAAAGTTTGTCTTTTTAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAG
* ** * * * * *
237699 GATTAGGAACCA-TTACATAGACTTCACATAAGGATACAAGATATTGGCGCTTTGGTTTCGTAAG
131 GATTAGGCACCACAAACATAGTCTTCTCATAAGGATACACGATATTGACGCTTTGGTTTCGCAAG
* * * * * *
237763 AAAGGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTTGTGTCTCAAATGAGACAAACATTGA
196 AAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTTATGCCTCAAATGAGTCAAACATGGA
*
237828 TTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATATACACATTCTCCTTATTATG-GA
261 TTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTTATTA-GAGA
* * * * *
237892 AATCATCTTAATGAATTTCTTTCGCATGGAAATGTTTCCTTTGCCCTATTTTCCTTAAAATCAAA
325 AATGATATTAATGATTTTATTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCTTAAAATCAAA
* * * * *
237957 GTTCATCCCTTAAATAAGCCAAGCACTGATTCTTGTAACAATCCCATTTTCTTCAAGATTGGGAA
390 GTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAATCCCA-TTCCTTCAAAATTGGGAA
*
238022 TCAAAAACATATTCCCTTCA
454 CCAAAAACATATTCCCTTCA
* * * * * *
238042 TTAGGATACATGACATTGATGCTTTGGAATCGTAAGAATATCTATTCTTTCCGCCATTTTTGATA
1 TTAGGATACATGACATTGATGCTTTGGTATCGCAAGAAAAGCTATTCTTTCCACCGTTTTTGATA
* * *
238107 GGATCAAAGTTTGTCTTTTTAATAAGACAAACATGAATAATCAAACTAATCCCCATTCTTTTCAG
66 GAATCAAAGTTTGTCTTTTTAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAG
* * *
238172 GATTAGGCACCACAAACATAGTCTTCTCATAAGGATACATGATATTGGCACTTTGGTTTCGCAAG
131 GATTAGGCACCACAAACATAGTCTTCTCATAAGGATACACGATATTGACGCTTTGGTTTCGCAAG
* *
238237 AAAGGCTTTC-TCCTCACCAATTTTTGTAAAGTCTAAGTCTGTGCCTCAAATGAGTCAAACATGG
196 AAAGGCTTTCTTCC-CACCAATTTTTGTAAAGTCTAAGTTTATGCCTCAAATGAGTCAAACATGG
* * *
238301 ATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACTATAAACACCTTCTCCTTATTAGAAT
260 ATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTTATTAG-AG
* * * *
238366 AAATGATATTGATGATTTTATTTTGCATGGAAATGTTACCTTTGCCTTATTTTCTTTAAAATCAA
324 AAATGATATTAATGATTTTATTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCTTAAAATCAA
* * *
238431 AGTTCATCCCCATAAATAAGGCAAGCATTGATTCTCGTAACAGTCCCCATTCTTCTCAAAATTGG
389 AGTTCAT-CCCTTAAATAAGGCAAGCATTGATTCTCGTAACAAT-CCCATTCCT-TCAAAATTGG
*
238496 GAACCAAAAACGTATTCCCTT
451 GAACCAAAAACATATTCCCTT
238517 TGTAGACACC
Statistics
Matches: 1208, Mismatches: 191, Indels: 41
0.84 0.13 0.03
Matches are distributed among these distances:
471 3 0.00
472 125 0.10
473 441 0.37
474 464 0.38
475 106 0.09
476 37 0.03
477 32 0.03
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (473 bp):
TTAGGATACATGACATTGATGCTTTGGTATCGCAAGAAAAGCTATTCTTTCCACCGTTTTTGATA
GAATCAAAGTTTGTCTTTTTAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAG
GATTAGGCACCACAAACATAGTCTTCTCATAAGGATACACGATATTGACGCTTTGGTTTCGCAAG
AAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTTATGCCTCAAATGAGTCAAACATGGA
TTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTTATTAGAGAA
ATGATATTAATGATTTTATTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCTTAAAATCAAAG
TTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAATCCCATTCCTTCAAAATTGGGAACC
AAAAACATATTCCCTTCA
Found at i:238832 original size:20 final size:20
Alignment explanation
Indices: 238802--238858 Score: 78
Period size: 20 Copynumber: 2.8 Consensus size: 20
238792 AATTGTCACA
*
238802 ATTTGTATCGATACATTGTTC
1 ATTT-TATCGATACATTGCTC
*
238823 ATTTTATCGATATATTGCTC
1 ATTTTATCGATACATTGCTC
*
238843 ATTGTATCGATACATT
1 ATTTTATCGATACATT
238859 CTAGGTTTAC
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
20 28 0.88
21 4 0.12
ACGTcount: A:0.26, C:0.14, G:0.12, T:0.47
Consensus pattern (20 bp):
ATTTTATCGATACATTGCTC
Found at i:238917 original size:20 final size:20
Alignment explanation
Indices: 238873--238928 Score: 67
Period size: 20 Copynumber: 2.8 Consensus size: 20
238863 GTTTACCCAG
* **
238873 ATGTATCGATACATTTTGCA
1 ATGTATCGATACAATGAGCA
*
238893 TTGTATCGATACAATGAGCA
1 ATGTATCGATACAATGAGCA
*
238913 ATGTATCAATACAATG
1 ATGTATCGATACAATG
238929 TATTGATACT
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.36, C:0.14, G:0.16, T:0.34
Consensus pattern (20 bp):
ATGTATCGATACAATGAGCA
Found at i:241504 original size:28 final size:28
Alignment explanation
Indices: 241472--241540 Score: 86
Period size: 28 Copynumber: 2.5 Consensus size: 28
241462 TTAGCGGGGG
*
241472 TACTCCAACCCCGTTATGT-CATCGAGGA
1 TACTCCAACCCCGTTATGTCCA-AGAGGA
* * *
241500 TACTCCAATCCCGTTATTTCCAAGGGGA
1 TACTCCAACCCCGTTATGTCCAAGAGGA
241528 TACTCCAACCCCG
1 TACTCCAACCCCG
241541 ATTTTATTTC
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
28 33 0.94
29 2 0.06
ACGTcount: A:0.25, C:0.35, G:0.16, T:0.25
Consensus pattern (28 bp):
TACTCCAACCCCGTTATGTCCAAGAGGA
Found at i:241583 original size:107 final size:107
Alignment explanation
Indices: 241383--241587 Score: 243
Period size: 107 Copynumber: 1.9 Consensus size: 107
241373 CACCAACTTT
* * * *
241383 TCATCGGGGATACTCCAACCCCGTTATTTTCGAGGGATACTCCAACCCTAGTTTTATATCTAAAA
1 TCATCGAGGATACTCCAACCCCGTTATTTCCAAGGGATACTCCAACCCGAGTTTTATATCTAAAA
** * * ** * *
241448 TATTGATTTTTTTATTAGCGGGGGTACTCCAACCCCGTTATG
66 TATCCAATTTTTCACAAGCGGAGATACTCCAACCCCGTTATG
* *
241490 TCATCGAGGATACTCCAATCCCGTTATTTCCAAGGGGATACTCCAACCCCGA-TTTTATTTCTAA
1 TCATCGAGGATACTCCAACCCCGTTATTTCCAA-GGGATACTCCAA-CCCGAGTTTTATATCTAA
*
241554 AATA-CCAATTTTTCACAATCGGAGATACTCCAAC
64 AATATCCAATTTTTCACAAGCGGAGATACTCCAAC
241588 TCCGATTTTA
Statistics
Matches: 81, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
107 50 0.62
108 27 0.33
109 4 0.05
ACGTcount: A:0.27, C:0.25, G:0.15, T:0.32
Consensus pattern (107 bp):
TCATCGAGGATACTCCAACCCCGTTATTTCCAAGGGATACTCCAACCCGAGTTTTATATCTAAAA
TATCCAATTTTTCACAAGCGGAGATACTCCAACCCCGTTATG
Found at i:241593 original size:51 final size:51
Alignment explanation
Indices: 241526--241641 Score: 171
Period size: 51 Copynumber: 2.3 Consensus size: 51
241516 TTTCCAAGGG
* *
241526 GATACTCCAACCCCGATTTTA-TTTCTAAAATACCAATTTTTCACAATCGGA
1 GATACTCCAACCCCGATTTTATTTTC-AAAACACCAATTTCTCACAATCGGA
* * *
241577 GATACTCCAACTCCGATTTTATTTTCAAAACACTAATTTCTCACAATCGGG
1 GATACTCCAACCCCGATTTTATTTTCAAAACACCAATTTCTCACAATCGGA
241628 GATACTCCAACCCC
1 GATACTCCAACCCC
241642 ATTATTTTCA
Statistics
Matches: 58, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
51 54 0.93
52 4 0.07
ACGTcount: A:0.32, C:0.28, G:0.09, T:0.31
Consensus pattern (51 bp):
GATACTCCAACCCCGATTTTATTTTCAAAACACCAATTTCTCACAATCGGA
Found at i:241745 original size:158 final size:158
Alignment explanation
Indices: 241577--241885 Score: 394
Period size: 158 Copynumber: 2.0 Consensus size: 158
241567 CACAATCGGA
* *
241577 GATACTCCAA-CTCCGATTTTATTTTCAAAACACTAA-TTTCTCACAATCGGGGATACTCCAACC
1 GATACTCCAACCT-CGATTTTATTTTCAAAACACCAATTTTCT-ACAATCAGGGATACTCCAACC
* * * * *
241640 CCATTATTTTCACGAGGATACTCTAAC-CCTGGCCTTATTTCTAAAGCAT-C-GATTTTCCACCA
64 CCATTATTTCCAAGAGGATACTCCAACACC-GACCTTATTTCTAAA--ATACTGATTTTCCACAA
*
241702 TCGGGGATACTCCAACCCCGTTATTTTTGAAGG
126 TCAGGGATACTCCAACCCCGTTATTTTTGAAGG
* *
241735 GATACTCCAACCTCGATTTTATTTTCAAAACACCAATTTTCTATAATCAGGGATACTCCAACCCT
1 GATACTCCAACCTCGATTTTATTTTCAAAACACCAATTTTCTACAATCAGGGATACTCCAACCCC
* ** * *
241800 ATTATTTCCAAGGGGATACTCCAACACCGATTTTATTTTTAAAATACTGATTTTCCATAATCAGG
66 ATTATTTCCAAGAGGATACTCCAACACCGACCTTATTTCTAAAATACTGATTTTCCACAATCAGG
*
241865 GATACTCCAACCCTGTTATTT
131 GATACTCCAACCCCGTTATTT
241886 CTGAGATTTT
Statistics
Matches: 130, Mismatches: 16, Indels: 10
0.83 0.10 0.06
Matches are distributed among these distances:
156 2 0.02
157 1 0.01
158 118 0.91
159 9 0.07
ACGTcount: A:0.29, C:0.26, G:0.12, T:0.33
Consensus pattern (158 bp):
GATACTCCAACCTCGATTTTATTTTCAAAACACCAATTTTCTACAATCAGGGATACTCCAACCCC
ATTATTTCCAAGAGGATACTCCAACACCGACCTTATTTCTAAAATACTGATTTTCCACAATCAGG
GATACTCCAACCCCGTTATTTTTGAAGG
Found at i:241878 original size:79 final size:78
Alignment explanation
Indices: 241577--241886 Score: 295
Period size: 79 Copynumber: 3.9 Consensus size: 78
241567 CACAATCGGA
* *
241577 GATACTCCAACTCCGATTTTATTTTCAAAACACT-AATTTCTCACAATCGGGGATACTCCAACCC
1 GATACTCCAAC-CCGATTTTATTTTCAAAACACTGATTTTC-CACAATCAGGGATACTCCAACCC
* * *
241641 CATTATTTTCACGAG
64 CATTATTTCCAAGGG
* *** * * *
241656 GATACTCTAACCCTGGCCTTA-TTTCTAAAGCA-TCGATTTTCCACCATCGGGGATACTCCAACC
1 GATACTCCAACCC-GATTTTATTTTC-AAAACACT-GATTTTCCACAATCAGGGATACTCCAACC
* **
241719 CCGTTATTTTTGAA-GG
63 CCATTA-TTTCCAAGGG
** * * *
241735 GATACTCCAACCTCGATTTTATTTTCAAAACACCAATTTTCTATAATCAGGGATACTCCAACCCT
1 GATACTCCAACC-CGATTTTATTTTCAAAACACTGATTTTCCACAATCAGGGATACTCCAACCCC
241800 ATTATTTCCAAGGG
65 ATTATTTCCAAGGG
* * * *
241814 GATACTCCAACACCGATTTTATTTTTAAAATACTGATTTTCCATAATCAGGGATACTCCAACCCT
1 GATACTCCAAC-CCGATTTTATTTTCAAAACACTGATTTTCCACAATCAGGGATACTCCAACCCC
*
241879 GTTATTTC
65 ATTATTTC
241887 TGAGATTTTA
Statistics
Matches: 189, Mismatches: 32, Indels: 20
0.78 0.13 0.08
Matches are distributed among these distances:
78 12 0.06
79 161 0.85
80 16 0.08
ACGTcount: A:0.29, C:0.26, G:0.12, T:0.33
Consensus pattern (78 bp):
GATACTCCAACCCGATTTTATTTTCAAAACACTGATTTTCCACAATCAGGGATACTCCAACCCCA
TTATTTCCAAGGG
Found at i:248123 original size:319 final size:319
Alignment explanation
Indices: 247544--248476 Score: 1839
Period size: 319 Copynumber: 2.9 Consensus size: 319
247534 ATAAGGAAGT
*
247544 GAATGCTGTCAACGAAAGTCATCCCAAGTTTAATAGGAGCCCGCATCCGACACAGACTATATATT
1 GAATGCTGTCAACGAAAGTCATCCTAAGTTTAATAGGAGCCCGCATCCGACACAGACTATATATT
*
247609 TCTCAAATGTGTCACAGCCAGGTTTTAACTTCTACCCACCAATGCCATAACCCATGCATTCTACC
66 TCTCAAATGTGTCACAGCTAGGTTTTAACTTCTACCCACCAATGCCATAACCCATGCATTCTACC
247674 GAGATTGTTCCAACAATGAATTTCACCCCAAACCTAGCTCCGAGCATGACCCAAAACGTGCAGCC
131 GAGATTGTTCCAACAATGAATTTCACCCCAAACCTAGCTCCGAGCATGACCCAAAACGTGCAGCC
247739 TCACCATGCATTTAACGCAAGGAACATAAACAACCAACAAACACCCCAGGAAAGGGAACACTTTA
196 TCACCATGCATTTAACGCAAGGAACATAAACAACCAACAAACACCCCAGGAAAGGGAACACTTTA
247804 ACCCGCTCCCCTACTGCTACAAGGAAATGTATTCCAAGTTTAATAGGAATACTGTCAAC
261 ACCCGCTCCCCTACTGCTACAAGGAAATGTATTCCAAGTTTAATAGGAATACTGTCAAC
247863 GAATGCTGTCAACGAAAGTCATCCTAAGTTTAATAGGAGCCCGCATCCGACACAGACTATATATT
1 GAATGCTGTCAACGAAAGTCATCCTAAGTTTAATAGGAGCCCGCATCCGACACAGACTATATATT
247928 TCTCAAATGTGTCACAGCTAGGTTTTAACTTCTACCCACCAATGCCATAACCCATGCATTCTACC
66 TCTCAAATGTGTCACAGCTAGGTTTTAACTTCTACCCACCAATGCCATAACCCATGCATTCTACC
247993 GAGATTGTTCCAACAATGAATTTCACCCCAAACCTAGCTCCGAGCATGACCCAAAACGTGCAGCC
131 GAGATTGTTCCAACAATGAATTTCACCCCAAACCTAGCTCCGAGCATGACCCAAAACGTGCAGCC
248058 TCACCATGCATTTAACGCAAGGAACATAAACAACCAACAAACACCCCAGGAAAGGGAACACTTTA
196 TCACCATGCATTTAACGCAAGGAACATAAACAACCAACAAACACCCCAGGAAAGGGAACACTTTA
248123 ACCCGCTCCCCTACTGCTACAAGGAAATGTATTCCAAGTTTAATAGGAATACTGTCAAC
261 ACCCGCTCCCCTACTGCTACAAGGAAATGTATTCCAAGTTTAATAGGAATACTGTCAAC
248182 GAATGCTGTCAACGAAAGTCATCCTAAGTTTAATAGGAGCCCGCATCCGACACAGACTATATATT
1 GAATGCTGTCAACGAAAGTCATCCTAAGTTTAATAGGAGCCCGCATCCGACACAGACTATATATT
248247 TCTCAAATGTGTCACAGCTAGGTTTTAACTTCTACCCACCAATGCCATAACCCATGCATTCTACC
66 TCTCAAATGTGTCACAGCTAGGTTTTAACTTCTACCCACCAATGCCATAACCCATGCATTCTACC
248312 GAGATTGTTCCAACAATGAATTTCACCCCAAACCTAGCTCCGAGCATGACCCAAAACGTGCAGCC
131 GAGATTGTTCCAACAATGAATTTCACCCCAAACCTAGCTCCGAGCATGACCCAAAACGTGCAGCC
248377 TCACCATGCATTTAACGCAAGGAACATAAACAACCAACAAACACCCCAGGAAAGGGAACACTTTA
196 TCACCATGCATTTAACGCAAGGAACATAAACAACCAACAAACACCCCAGGAAAGGGAACACTTTA
*
248442 ACCCGCTCCCCTACTTCTACAAGGAAATGTATTCC
261 ACCCGCTCCCCTACTGCTACAAGGAAATGTATTCC
248477 CGTCTCTTGG
Statistics
Matches: 611, Mismatches: 3, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
319 611 1.00
ACGTcount: A:0.34, C:0.29, G:0.15, T:0.22
Consensus pattern (319 bp):
GAATGCTGTCAACGAAAGTCATCCTAAGTTTAATAGGAGCCCGCATCCGACACAGACTATATATT
TCTCAAATGTGTCACAGCTAGGTTTTAACTTCTACCCACCAATGCCATAACCCATGCATTCTACC
GAGATTGTTCCAACAATGAATTTCACCCCAAACCTAGCTCCGAGCATGACCCAAAACGTGCAGCC
TCACCATGCATTTAACGCAAGGAACATAAACAACCAACAAACACCCCAGGAAAGGGAACACTTTA
ACCCGCTCCCCTACTGCTACAAGGAAATGTATTCCAAGTTTAATAGGAATACTGTCAAC
Found at i:254917 original size:1 final size:1
Alignment explanation
Indices: 254913--254964 Score: 50
Period size: 1 Copynumber: 52.0 Consensus size: 1
254903 ATTCTTTTTT
* * * * * *
254913 AAAAAAAAACAAAAAAAACAAAAAAAATAATAAAAAAACAAAAAAGAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
254965 GAGAGAAAAG
Statistics
Matches: 39, Mismatches: 12, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
1 39 1.00
ACGTcount: A:0.88, C:0.06, G:0.02, T:0.04
Consensus pattern (1 bp):
A
Found at i:254928 original size:9 final size:9
Alignment explanation
Indices: 254914--254957 Score: 61
Period size: 9 Copynumber: 4.7 Consensus size: 9
254904 TTCTTTTTTA
254914 AAAAAAAAC
1 AAAAAAAAC
254923 AAAAAAAAC
1 AAAAAAAAC
*
254932 AAAAAAAATA
1 AAAAAAAA-C
254942 ATAAAAAAAC
1 A-AAAAAAAC
254952 AAAAAA
1 AAAAAA
254958 GAAAAAAGAG
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
9 22 0.71
10 2 0.06
11 7 0.23
ACGTcount: A:0.89, C:0.07, G:0.00, T:0.05
Consensus pattern (9 bp):
AAAAAAAAC
Found at i:254938 original size:20 final size:19
Alignment explanation
Indices: 254913--254964 Score: 68
Period size: 20 Copynumber: 2.6 Consensus size: 19
254903 ATTCTTTTTT
*
254913 AAAAAAAAACAAAAAAAAC
1 AAAAAAAAAAAAAAAAAAC
*
254932 AAAAAAAATAATAAAAAAAC
1 AAAAAAAA-AAAAAAAAAAC
254952 AAAAAAGAAAAAA
1 AAAAAA-AAAAAA
254965 GAGAGAAAAG
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
19 8 0.29
20 18 0.64
21 2 0.07
ACGTcount: A:0.88, C:0.06, G:0.02, T:0.04
Consensus pattern (19 bp):
AAAAAAAAAAAAAAAAAAC
Found at i:254964 original size:9 final size:9
Alignment explanation
Indices: 254914--254980 Score: 55
Period size: 9 Copynumber: 7.1 Consensus size: 9
254904 TTCTTTTTTA
*
254914 AAAAAAAAC
1 AAAAAAAAG
*
254923 AAAAAAAAC
1 AAAAAAAAG
*
254932 AAAAAAAAT
1 AAAAAAAAG
254941 AATAAAAAA-
1 AA-AAAAAAG
*
254950 ACAAAAAAG
1 AAAAAAAAG
254959 AAAAAAGAGAG
1 AAAAAA-A-AG
254970 AAAAGAAAAG
1 AAAA-AAAAG
254980 A
1 A
254981 GCCTGCTTAA
Statistics
Matches: 50, Mismatches: 3, Indels: 9
0.81 0.05 0.15
Matches are distributed among these distances:
8 6 0.12
9 25 0.50
10 10 0.20
11 7 0.14
12 2 0.04
ACGTcount: A:0.84, C:0.04, G:0.09, T:0.03
Consensus pattern (9 bp):
AAAAAAAAG
Found at i:256109 original size:94 final size:94
Alignment explanation
Indices: 255981--256221 Score: 410
Period size: 94 Copynumber: 2.6 Consensus size: 94
255971 GATGCCTTTT
* * *
255981 CCTTTTAAAGCCCACACAAGTTGGTGGCATTTCCTAGTCCTCAAAGAGCAGGATGCTTTCTCCTT
1 CCTTTTAAAGTCCACACAAGTTGGTGGCACTTCCTAGTCCTCAAAGAGCAGGATGCTCTCTCCTT
256046 TCCCCCTTTAGTCCTCAAAGAGCAAGACG
66 TCCCCCTTTAGTCCTCAAAGAGCAAGACG
*
256075 CCTTTTAAAGTCCACACAAGTTGGTGGCACTTCCTAGTCCTCAAAGAGTAGGATGCTCTCTCCTT
1 CCTTTTAAAGTCCACACAAGTTGGTGGCACTTCCTAGTCCTCAAAGAGCAGGATGCTCTCTCCTT
* * *
256140 TCCCCCTTTAGTCCTTAAAGAGCAGGATG
66 TCCCCCTTTAGTCCTCAAAGAGCAAGACG
*
256169 CCTTTTAAAGTCCACACAAGTTAGTGGCACTTCCTAGTCCTCAAAGAGCAGGA
1 CCTTTTAAAGTCCACACAAGTTGGTGGCACTTCCTAGTCCTCAAAGAGCAGGA
256222 CGCCTTTTAA
Statistics
Matches: 138, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
94 138 1.00
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (94 bp):
CCTTTTAAAGTCCACACAAGTTGGTGGCACTTCCTAGTCCTCAAAGAGCAGGATGCTCTCTCCTT
TCCCCCTTTAGTCCTCAAAGAGCAAGACG
Found at i:256313 original size:61 final size:59
Alignment explanation
Indices: 256148--256632 Score: 522
Period size: 61 Copynumber: 8.3 Consensus size: 59
256138 TTTCCCCCTT
* * * * *
256148 TAGTCCTTAAAGAGCAGGATGC---CTTTTAAAGTCCACACAAGTTAGTGGCAC-TTCC
1 TAGTCCTCAAAGAGCAGGACGCTTTCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTC
*
256203 TAGTCCTCAAAGAGCAGGACGC---CTTTTAAAGCCCACACAAGTTGATGGCACTTTTC
1 TAGTCCTCAAAGAGCAGGACGCTTTCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTC
*
256259 TAGTCCTCAAAGAGCAGGACGCTTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACTCTTC
1 TAGTCCTCAAAGAGCAGGACGC--TTTCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTC
*
256320 -AGTCCTCAAAGAGCAGGACGC---CTTTTAAAGCCCACACAAGTTGGTGGCACTTTTTT
1 TAGTCCTCAAAGAGCAGGACGCTTTCTTTTAAAGCCCACACAAGTTGGTGGCAC-TTTTC
* * * *
256376 TAGTCCTCAAAGAGCAGGATGC---CTTTTAAAGCCCACACAAGCTGGTAGCAC-CTTC
1 TAGTCCTCAAAGAGCAGGACGCTTTCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTC
* * * *
256431 -CGTCCTCAAAGTGCAGGACGCCTTCTCTTTTTAAAGCCCACACAAATTTGTGGCACTTTTC
1 TAGTCCTCAAAGAGCAGGACG-CTT-TC-TTTTAAAGCCCACACAAGTTGGTGGCACTTTTC
* * *
256492 -AGTCCTCAAAGAGTAGGATGCTTTCTTTTTGCAAAGCCCACACAAGTTGGTGGCAC-CTTC
1 TAGTCCTCAAAGAGCAGGACGCTTTC-TTTT--AAAGCCCACACAAGTTGGTGGCACTTTTC
* * *
256552 TAGTCCTTAAAGAGCAGGACGCCTTTTCTTTTCAAAGCCCACACGAGTGGGTGGCACTTTT-
1 TAGTCCTCAAAGAGCAGGACG-C-TTTCTTTT-AAAGCCCACACAAGTTGGTGGCACTTTTC
*
256613 TTGTCCTCAAAGAGCAGGAC
1 TAGTCCTCAAAGAGCAGGAC
256633 ACACTTTCTT
Statistics
Matches: 371, Mismatches: 38, Indels: 36
0.83 0.09 0.08
Matches are distributed among these distances:
54 17 0.05
55 78 0.21
56 28 0.08
57 47 0.13
59 8 0.02
60 51 0.14
61 131 0.35
62 7 0.02
63 4 0.01
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.27
Consensus pattern (59 bp):
TAGTCCTCAAAGAGCAGGACGCTTTCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTC
Found at i:256347 original size:116 final size:118
Alignment explanation
Indices: 256170--256632 Score: 542
Period size: 116 Copynumber: 3.9 Consensus size: 118
256160 AGCAGGATGC
* *
256170 CTTTTAAAGTCCACACAAGTTAGTGGCA-CTTCCTAGTCCTCAAAGAGCAGGACG-C-CTTTTAA
1 CTTTTAAAGCCCACACAAGTTGGTGGCACCTT-CTAGTCCTCAAAGAGCAGGACGCCTCTTTTAA
*
256232 AGCCCACACAAGTTGATGGCACTTTTCTAGTCCTCAAAGAGCAGGACGCTTTTT
65 AGCCCACACAAGTTGGTGGCACTTTTCTAGTCCTCAAAGAGCAGGACGCTTTTT
256286 CTTTTAAAGCCCACACAAGTTGGTGGCACTCTTC-AGTCCTCAAAGAGCAGGACG-C-CTTTTAA
1 CTTTTAAAGCCCACACAAGTTGGTGGCAC-CTTCTAGTCCTCAAAGAGCAGGACGCCTCTTTTAA
* *
256348 AGCCCACACAAGTTGGTGGCACTTTTTTTAGTCCTCAAAGAGCAGGATGC-----
65 AGCCCACACAAGTTGGTGGCAC-TTTTCTAGTCCTCAAAGAGCAGGACGCTTTTT
* * * *
256398 CTTTTAAAGCCCACACAAGCTGGTAGCACCTTC-CGTCCTCAAAGTGCAGGACGCCTTCTCTTTT
1 CTTTTAAAGCCCACACAAGTTGGTGGCACCTTCTAGTCCTCAAAGAGCAGGACG-C--CTC-TTT
* * * *
256462 TAAAGCCCACACAAATTTGTGGCACTTTTC-AGTCCTCAAAGAGTAGGATGCTTTCTT
62 TAAAGCCCACACAAGTTGGTGGCACTTTTCTAGTCCTCAAAGAGCAGGACGCTTT-TT
* *
256519 -TTTGCAAAGCCCACACAAGTTGGTGGCACCTTCTAGTCCTTAAAGAGCAGGACGCCTTTTCTTT
1 CTTT-TAAAGCCCACACAAGTTGGTGGCACCTTCTAGTCCTCAAAGAGCAGGACGCC---TCTTT
* * *
256583 TCAAAGCCCACACGAGTGGGTGGCACTTTT-TTGTCCTCAAAGAGCAGGAC
62 T-AAAGCCCACACAAGTTGGTGGCACTTTTCTAGTCCTCAAAGAGCAGGAC
256633 ACACTTTCTT
Statistics
Matches: 299, Mismatches: 26, Indels: 38
0.82 0.07 0.10
Matches are distributed among these distances:
111 22 0.07
112 27 0.09
115 21 0.07
116 80 0.27
117 52 0.17
118 3 0.01
119 1 0.00
120 3 0.01
121 31 0.10
122 59 0.20
ACGTcount: A:0.26, C:0.27, G:0.20, T:0.27
Consensus pattern (118 bp):
CTTTTAAAGCCCACACAAGTTGGTGGCACCTTCTAGTCCTCAAAGAGCAGGACGCCTCTTTTAAA
GCCCACACAAGTTGGTGGCACTTTTCTAGTCCTCAAAGAGCAGGACGCTTTTT
Found at i:256566 original size:233 final size:229
Alignment explanation
Indices: 256146--256631 Score: 648
Period size: 233 Copynumber: 2.1 Consensus size: 229
256136 CCTTTCCCCC
* * * *
256146 TTTAGTCCTTAAAGAGCAGGATGCCTTTTAAAGTCCACACAAGTTAGTGGCACTTCCTAGTCCTC
1 TTTAGTCCTCAAAGAGCAGGATGCCTTTTAAAGCCCACACAAGCTAGTAGCACTTCC-AGTCCTC
256211 AAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGATGGCACTTTTCTAGTCCTCAAAGAGCAG
65 AAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGATGGCACTTTTCTAGTCCTCAAAGAGCAG
*
256276 GACGCTTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACTCTTCAGTCCTCAAAGAGCAGGACG-
130 GACGCTTTTTCTTTCAAAGCCCACACAAGTTGGTGGCACTCTTCAGTCCTCAAAGAGCAGGACGC
*
256340 C-CTTTT-AAAGCCCACACAAGTTGGTGGCACTTTT
195 CTCTTTTCAAAGCCCACACAAGTGGGTGGCAC-TTT
*
256374 TTTAGTCCTCAAAGAGCAGGATGCCTTTTAAAGCCCACACAAGCTGGTAGCACCTTCC-GTCCTC
1 TTTAGTCCTCAAAGAGCAGGATGCCTTTTAAAGCCCACACAAGCTAGTAGCA-CTTCCAGTCCTC
* *
256438 AAAGTGCAGGACGCCTTCTCTTTTTAAAGCCCACACAAATTTG-TGGCACTTTTC-AGTCCTCAA
65 AAAGAGCAGGACG----C-C-TTTTAAAGCCCACAC-AAGTTGATGGCACTTTTCTAGTCCTCAA
* * *
256501 AGAGTAGGATGCTTTCTT-TTTGCAAAGCCCACACAAGTTGGTGGCAC-CTTCTAGTCCTTAAAG
123 AGAGCAGGACGCTTT-TTCTTT-CAAAGCCCACACAAGTTGGTGGCACTCTTC-AGTCCTCAAAG
*
256564 AGCAGGACGCCTTTTCTTTTCAAAGCCCACACGAGTGGGTGGCACTTT
185 AGCAGGACGCC---TCTTTTCAAAGCCCACACAAGTGGGTGGCACTTT
256612 TTT-GTCCTCAAAGAGCAGGA
1 TTTAGTCCTCAAAGAGCAGGA
256632 CACACTTTCT
Statistics
Matches: 228, Mismatches: 13, Indels: 25
0.86 0.05 0.09
Matches are distributed among these distances:
227 18 0.08
228 47 0.21
229 5 0.02
231 1 0.00
232 30 0.13
233 71 0.31
234 6 0.03
237 17 0.07
238 11 0.05
239 22 0.10
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (229 bp):
TTTAGTCCTCAAAGAGCAGGATGCCTTTTAAAGCCCACACAAGCTAGTAGCACTTCCAGTCCTCA
AAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGATGGCACTTTTCTAGTCCTCAAAGAGCAGG
ACGCTTTTTCTTTCAAAGCCCACACAAGTTGGTGGCACTCTTCAGTCCTCAAAGAGCAGGACGCC
TCTTTTCAAAGCCCACACAAGTGGGTGGCACTTT
Found at i:256860 original size:40 final size:42
Alignment explanation
Indices: 256763--256862 Score: 107
Period size: 42 Copynumber: 2.4 Consensus size: 42
256753 GACGTACTGT
* *
256763 TTTTCACTTTGTCCTCAAGAAGCAGGACACTTTCCTTTTCTTC
1 TTTTC-CTTTGTCCTCAAGAAGCAAGACACTTTCCTATTCTTC
* * * *
256806 TCTTCCTTTATCCTCAAGGAGCAAGAC-CTATTTC-ATTC-TC
1 TTTTCCTTTGTCCTCAAGAAGCAAGACACT-TTCCTATTCTTC
256846 TTTTCCTTTGTCCTCAA
1 TTTTCCTTTGTCCTCAA
256863 AAAGTGGGAC
Statistics
Matches: 48, Mismatches: 8, Indels: 5
0.79 0.13 0.08
Matches are distributed among these distances:
40 17 0.35
41 5 0.10
42 22 0.46
43 4 0.08
ACGTcount: A:0.19, C:0.29, G:0.10, T:0.42
Consensus pattern (42 bp):
TTTTCCTTTGTCCTCAAGAAGCAAGACACTTTCCTATTCTTC
Found at i:257471 original size:20 final size:20
Alignment explanation
Indices: 257446--257609 Score: 170
Period size: 20 Copynumber: 7.8 Consensus size: 20
257436 TTCTCACAAT
257446 TTGTATCGATACATTGTTCA
1 TTGTATCGATACATTGTTCA
*
257466 TTGTATCGATACATTGCTCA
1 TTGTATCGATACATTGTTCA
257486 TTGTATCGATACATTTTGGGTTTACCCA
1 TTGTATCGATACA--TT--G-TT---CA
*
257514 GATGTATCGATACATT-TTGCA
1 -TTGTATCGATACATTGTT-CA
*
257535 TTGTATCGATACATTGCTCA
1 TTGTATCGATACATTGTTCA
*
257555 TTGTATCGATACATTGCTCA
1 TTGTATCGATACATTGTTCA
257575 TTGTATCGATACATT-TTACA
1 TTGTATCGATACATTGTT-CA
*
257595 ATGTATCGATACATT
1 TTGTATCGATACATT
257610 CAGTCATTTT
Statistics
Matches: 125, Mismatches: 8, Indels: 22
0.81 0.05 0.14
Matches are distributed among these distances:
19 1 0.01
20 99 0.79
21 3 0.02
22 2 0.02
23 2 0.02
24 1 0.01
25 1 0.01
27 2 0.02
28 2 0.02
29 12 0.10
ACGTcount: A:0.26, C:0.17, G:0.15, T:0.41
Consensus pattern (20 bp):
TTGTATCGATACATTGTTCA
Found at i:260175 original size:53 final size:51
Alignment explanation
Indices: 260080--260250 Score: 173
Period size: 51 Copynumber: 3.3 Consensus size: 51
260070 TTATTTCCAA
* * * ** * *
260080 GGGGATACTCCAACCCCAGTTTTATATCTAAAATATTGATTTTTTTTATAATC
1 GGGGATACTCCAACCCGAATTTTATTTCTAAAATA-CCA-ATTTTTCATAATC
* *
260133 GGGGGTACTCCAACCCGAATTTTATTTCTAAAATACCAATTTTTCACAATC
1 GGGGATACTCCAACCCGAATTTTATTTCTAAAATACCAATTTTTCATAATC
** * * * *
260184 GAAGATACTCCAACTCTG-ATTTTATTTCCAAAACACCAATTTCTCATAATC
1 GGGGATACTCCAAC-CCGAATTTTATTTCTAAAATACCAATTTTTCATAATC
260235 GGGGATACTCCAACCC
1 GGGGATACTCCAACCC
260251 CGTTATTTTC
Statistics
Matches: 97, Mismatches: 20, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
50 1 0.01
51 62 0.64
52 3 0.03
53 31 0.32
ACGTcount: A:0.32, C:0.23, G:0.11, T:0.34
Consensus pattern (51 bp):
GGGGATACTCCAACCCGAATTTTATTTCTAAAATACCAATTTTTCATAATC
Found at i:260411 original size:79 final size:80
Alignment explanation
Indices: 260315--260470 Score: 278
Period size: 79 Copynumber: 2.0 Consensus size: 80
260305 TCCACCATCG
260315 GGGGATACTCCAACCCCGATTTTATTTTCAAAACACCAATTTTCTATAATTAGGGATACTCCAAC
1 GGGGATACTCCAACCCCGATTTTATTTTCAAAACACCAATTTTCTATAATTAGGGATACTCCAAC
260380 CCTGTT-TTTTCCGA
66 CCTGTTATTTTCCGA
* * *
260394 GGGGATACTCCAACCCCGATTTTATTTTTAAAATACCGATTTTCTATAATTAGGGATACTCCAAC
1 GGGGATACTCCAACCCCGATTTTATTTTCAAAACACCAATTTTCTATAATTAGGGATACTCCAAC
260459 CCTGTTATTTTC
66 CCTGTTATTTTC
260471 GAGATTTTAT
Statistics
Matches: 73, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
79 68 0.93
80 5 0.07
ACGTcount: A:0.28, C:0.24, G:0.13, T:0.36
Consensus pattern (80 bp):
GGGGATACTCCAACCCCGATTTTATTTTCAAAACACCAATTTTCTATAATTAGGGATACTCCAAC
CCTGTTATTTTCCGA
Found at i:260419 original size:131 final size:130
Alignment explanation
Indices: 260132--260437 Score: 350
Period size: 131 Copynumber: 2.3 Consensus size: 130
260122 TTTTTATAAT
* * *
260132 CGGGGGTACTCCAA-CCCGAATTTTATTTCTAAAATACCAATTTTTCACAATCGAAGATACTCCA
1 CGGGGATACTCCAACCCCG-ATTTTATTTCTAAAACACCAATTTTCCACAATCGAAGATACTCCA
* * *
260196 ACTCTGATTTTATTTCCAAAACACCAATTTCTCATAATCGGGGATACTCCAACCCCGTTATTTTC
65 ACCCCGATTTTATTTCCAAAACACCAATTTCTCATAATCAGGGATACTCCAACCCCGTTATTTTC
260261 A
130 A
*** * * * * **
260262 CGGGGATACTCCAACCCCGGCCTTATTTCTAAAGCATCGATTTTCCACCATCGGGGGATACTCCA
1 CGGGGATACTCCAACCCCGATTTTATTTCTAAAACACCAATTTTCCACAATC-GAAGATACTCCA
* * *
260327 ACCCCGATTTTATTTTCAAAACACCAATTT-TCTATAATTAGGGATACTCCAACCCTGTT-TTTT
65 ACCCCGATTTTATTTCCAAAACACCAATTTCTC-ATAATCAGGGATACTCCAACCCCGTTATTTT
260390 C-
129 CA
* * *
260391 CGAGGGGATACTCCAACCCCGATTTTATTTTTAAAATACCGATTTTC
1 C--GGGGATACTCCAACCCCGATTTTATTTCTAAAACACCAATTTTC
260438 TATAATTAGG
Statistics
Matches: 146, Mismatches: 25, Indels: 9
0.81 0.14 0.05
Matches are distributed among these distances:
129 1 0.01
130 44 0.30
131 101 0.69
ACGTcount: A:0.28, C:0.27, G:0.13, T:0.32
Consensus pattern (130 bp):
CGGGGATACTCCAACCCCGATTTTATTTCTAAAACACCAATTTTCCACAATCGAAGATACTCCAA
CCCCGATTTTATTTCCAAAACACCAATTTCTCATAATCAGGGATACTCCAACCCCGTTATTTTCA
Found at i:263128 original size:475 final size:475
Alignment explanation
Indices: 262217--266614 Score: 5287
Period size: 475 Copynumber: 9.3 Consensus size: 475
262207 TAGGCACTAT
* * * *
262217 AAACATATTCTCC-TCCTTAGGATACATGATATTGATGCTTTGGTGTCGAAAGAAAAGCTTTTCT
1 AAACATATTC-CCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTATTCT
* * * * * * * *
262281 TTCAACCGTTTTTGTTAGAATCAAAATTTGTTTTTTTAATAAGACGAACATGAAGAGTCATACTA
65 TTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTA
* * * * *
262346 ATCCCCATTTTTTTCAAGATTAGGCATCC-TAAACGTAGGCTTCTCATAAGGATACACGATATTG
130 ATCCCCATTCTTTTCAGGATTAGGCA-CCATAAACATAGTCTTCTCTTAAGGATACACGATATT-
** ** * * *
262410 GA-GCTTTGGTTTTGCAAGATGGGCTTTCTTATCACTAATTTTTGTAAAGTGTAAGTTCATGCCT
193 GATGCTTTGGTTTTGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTTATGCCT
* * * * **
262474 CGAATGAGTCAAACATAGATTCAAGTAATGATCTTCATTCATTTTGTGATTAGGTACTATAAACA
258 CAAATGAGTCAAACATGGATTCTAGTAATGATCTTCATTCATTTTATGATTAGACACTATAAACA
* * * * ** * * * *
262539 CCTTCTCCTCATTAAGATAAATGATATTGATGATTTTATTTCACATGGAAAGGTTTCTTTTACCT
323 CATTCTCCTCATTAGGGTAAATGATATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCCC
* *
262604 TATTTTCCTTAAAATCAATGTTCATCCCTTAAATAAGGCAAGTATTGATTCTCGTAACAGTCCCA
388 TATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCCCA
* * *
262669 TTCTTCTCAAAATTTGGAACCAA
453 TTCTTTTCAAGATTGGGAACCAA
* ** * *
262692 AAAGATATTCCCTTCATTAGGATACATGACATTGATGCTTTGGAATCGTAAGAAAATCTATTCTT
1 AAACATATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTATTCTT
* * * * * *
262757 TCCACCATTTTTTATAGGATCAAAGTTTGTCTTTTTAATAAGACAAACATGAATAGTCAAACTAA
66 TCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAA
* * *
262822 TCCCCATTCTTTTCAGGATTAGGCACCACAAACATAGTCTTCTCTTAAGGATACACAATATTGAC
131 TCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCTTAAGGATACACGATATTGAT
* * * * *
262887 ACTTTGGTTTCGCAAGAAAGGCTTTC-TCCTCACCAAGTTTTGTAAAGTCTAAGTTTGTACCTCA
196 GCTTTGGTTTTGCAAGAAAGGCTTTCTTCC-CACCAATTTTTGTAAAGTCTAAGTTTATGCCTCA
* * * * * *
262951 AATGAGTCAAACATGGATTCTAGTAATAATCTTTATTCATTTTGTGATTAGGCACTATAACCACC
260 AATGAGTCAAACATGGATTCTAGTAATGATCTTCATTCATTTTATGATTAGACACTATAAACACA
* * * * * * *
263016 TTCTCCCCATTAAGATAAATGATATTGATGATTTTATTTTGCATGAAAATGTTACCTTTGCCTTA
325 TTCTCCTCATTAGGGTAAATGATATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCCCTA
*
263081 TTTTCCTTAAAATCAAAGTTCATCCCTTAAAGAAGGCAAGCATTGATTCTCGTAACAGTCCCTAT
390 TTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCCC-AT
*
263146 TCTTTTCAAAATTGGGAACCAA
454 TCTTTTCAAGATTGGGAACCAA
* * * * ** * *
263168 AAACATATTCCCTTCATTAGGATACATGATAATGATTCCTTAATATCGCATGAAAAGCTATTCTT
1 AAACATATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTATTCTT
* * *
263233 TCCACCGTTTTTGATAGAATTAAAGTTTATCTCTTAAATAAGACAAACATGAATAGTTATACTAA
66 TCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAA
* * * *
263298 TCCCTATTCTTTTCAAGATTAGGCACCGTAAACATAGTCTTCTCATTAA-GATAGACGATATTGA
131 TCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTC-TTAAGGATACACGATATTGA
* * * * **
263362 TGCTTTCGTTTCGCAAGAAAGGCTTTC-TCCCTTCTAATTTTTGTAAA-TCTAAGTTTATAACTC
195 TGCTTTGGTTTTGCAAGAAAGGCTTTCTTCCC-ACCAATTTTTGTAAAGTCTAAGTTTATGCCTC
* * * * * *
263425 AAATGAGTCAAGCATTGATTCTAGTAATGATCTTCATTCTTTTTTTGATTAAACACAATAAACAC
259 AAATGAGTCAAACATGGATTCTAGTAATGATCTTCATTCATTTTATGATTAGACACTATAAACAC
* * * * *
263490 ATTCTCATCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCT
324 ATTCTCCTCATTAGGGTAAATGATATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCCCT
* * * **
263555 ATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCAATTCTCGTAACAGTCTCCA
389 ATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTC-CCA
* *
263620 TTCCTTTCAAGATTAGGAACCAA
453 TTCTTTTCAAGATTGGGAACCAA
* * * * * * * * *
263643 GAACACATTCCCTTCTTTAAGATACATGTCATTGATGCTTTTGTGTCACAAGAAAAGATTTTCTT
1 AAACATATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTATTCTT
* * * * *
263708 TCAACCGTTTTTGATAGAATCAAAATTTGTCCCTTTAGTAAGACAAACATGAATAGTCATACTAA
66 TCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAA
* * * * * * * * *
263773 TCCCTATTCTTTTCAAGATTAGGCACCATAAACATAGAT-TTCACATAAGAATAAAAGGTATCGA
131 TCCCCATTCTTTTCAGGATTAGGCACCATAAACATAG-TCTTCTCTTAAGGATACACGATATTGA
* * * * * * * *
263837 TGCTTTGATTTTGTAAGAAAGGGTTTCTTCCCACCAATTTTTATAATGTCTAAGATCATGCCTTA
195 TGCTTTGGTTTTGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTTATGCCTCA
* * * *
263902 AATGAGACAAACATTGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGTCACTATAAACACA
260 AATGAGTCAAACATGGATTCTAGTAATGATCTTCATTCATTTTATGATTAGACACTATAAACACA
* * *
263967 TTCTCCTGATTAGGGTAGATGATATTGACGATTTTCTTTTGCATGGAAATGTTTCCTTTGCCCTA
325 TTCTCCTCATTAGGGTAAATGATATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCCCTA
* * * *
264032 TTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACACTGATTCTCGTAACAATCCCCAT
390 TTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGT-CCCAT
* *
264097 TTTTTTCAAGATTAGGAACCAA
454 TCTTTTCAAGATTGGGAACCAA
*
264119 AAACATATTCCCTTCATTATGATACATGACATTGATGCTTTGG-GATCGCAAGAAAAGCTATTCT
1 AAACATATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTG-TCGCAAGAAAAGCTATTCT
* *
264183 TTCCACCGTTTTTTATAGAATCAAAGTTTGTCTCTTAAAT-AGACAAACATGAATAGTCATACAA
65 TTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTA
* *
264247 ATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTATTCTCATTAA-GATAGACGATATTG
130 ATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTC-TTAAGGATACACGATATTG
* * * *
264311 GTGCTTTGGTTTTGCAAGAAAGGCTTTCTTCCCTCCAATTTTTGTAAAGTCCAAGTTTTTGCCTC
194 ATGCTTTGGTTTTGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTTATGCCTC
* * *
264376 AAATGAGTCAAACATGGATTCTAGTAATGATCGTCATTCATTTCATGATTAGACACAATAAACAC
259 AAATGAGTCAAACATGGATTCTAGTAATGATCTTCATTCATTTTATGATTAGACACTATAAACAC
* * * * * *
264441 ATTCTCCTCTTTAGGGTAAATTATGTTGATGATTTTTTTTTGCATGGAAATCTTTTCTTTGCCCT
324 ATTCTCCTCATTAGGGTAAATGATATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCCCT
* * * ** * * * *
264506 ATTTTCCTTAAAATAAAAAATTCATCCCATAAATTTGGCAAGCATCGATTTTCATAATAGTCTCC
389 ATTTTCCTTAAAAT-CAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTC-CC
264571 ATTCTTTTCAAGATTGGGAA-CAA
452 ATTCTTTTCAAGATTGGGAACCAA
* *** * *
264594 GAATGCATTCCCTTCATTAGGATACATGACATTTATGCTTTGGTGTCACAAGAAAAGCTATTCTT
1 AAACATATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTATTCTT
* * *
264659 TCAACTG-TTTTGATAGAATCAAAGTTTGTCTCATAAATAAGACAAACATGAATAGTCATACTAA
66 TCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAA
* * * * ** * * * * *
264723 TCCTCAATC-TTTCAGAATTAGGCACCATAAACATAGTCTACTAATAAGGATGCATGACATAGAC
131 TCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCTTAAGGATACACGATATTGAT
* * * *
264787 GCTTTGGTTTTGCAAGAAAGGCTTTCTTCCCACCAATTTCTATAATGTCTAAGTTTGTGCCTCAA
196 GCTTTGGTTTTGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTTATGCCTCAA
* * * * * *
264852 GTAAGACAAACATTGATTCTACTAATGATCTTCATTCATTTTATGATTAGGCACTATAAACACAT
261 ATGAGTCAAACATGGATTCTAGTAATGATCTTCATTCATTTTATGATTAGACACTATAAACACAT
* * * *
264917 TCTCCTGATTATGGTAAATGATCTTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCCGTAT
326 TCTCCTCATTAGGGTAAATGATATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCCCTAT
* * * * * *
264982 TTTCTTTAAAATCAAAGTTCATTCCTTAGATAAGACAAGCAATGATTCTCGTAACAATCCCCATT
391 TTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGT-CCCATT
*
265047 CTTTTCAAGATTAGGAACCAA
455 CTTTTCAAGATTGGGAACCAA
*
265068 AAACATATTCCCTTCATTATGATACATGACATTGATGCTTTGG-GATCGCAAGAAAAGCTATTCT
1 AAACATATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTG-TCGCAAGAAAAGCTATTCT
*
265132 TTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAT-AGACAAACATGAATAGTCATACAA
65 TTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTA
* *
265196 ATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTATTCTCATTAA-GATAGACGATATTG
130 ATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTC-TTAAGGATACACGATATTG
* * * *
265260 GTGCTTTGGTTTTGCAAGAAAGGCTTTCTTCCCTCCAATTTTTGTAAAGTCCAAGTTTTTGCCTC
194 ATGCTTTGGTTTTGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTTATGCCTC
* * *
265325 AAATGAGTCAAACATGGATTCTAGTAATGATCGTCATTCATTTCATGATTAGACACAATAAACAC
259 AAATGAGTCAAACATGGATTCTAGTAATGATCTTCATTCATTTTATGATTAGACACTATAAACAC
* * * * * *
265390 ATTCTCCTCTTTAGGGTAAATTATGTTGATGATTTTTTTTTGCATGGAAATCTTTTCTTTGCCCT
324 ATTCTCCTCATTAGGGTAAATGATATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCCCT
* * * ** * * * *
265455 ATTTTCCTTAAAATAAAAAATTCATCCCATAAATTTGGCAAGCATCGATTTTCATAATAGTCTCC
389 ATTTTCCTTAAAAT-CAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTC-CC
265520 ATTCTTTTCAAGATTGGGAA-CAA
452 ATTCTTTTCAAGATTGGGAACCAA
* *** * *
265543 GAATGCATTCCCTTCATTAGGATACATGACATTTATGCTTTGGTGTCACAAGAAAAGCTATTCTT
1 AAACATATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTATTCTT
* * *
265608 TCAACTG-TTTTGATAGAATCAAAGTTTGTCTCATAAATAAGACAAACATGAATAGTCATACTAA
66 TCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAA
* * * * ** * * * * *
265672 TCCTCAATC-TTTCAGAATTAGGCACCATAAACATAGTCTACTAATAAGGATGCATGACATAGAC
131 TCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCTTAAGGATACACGATATTGAT
* * * *
265736 GCTTTGGTTTTGCAAGAAAGGCTTTCTTCCCACCAATTTCTATAATGTCTAAGTTTGTGCCTCAA
196 GCTTTGGTTTTGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTTATGCCTCAA
* * * * * *
265801 GTAAGACAAACATTGATTCTACTAATGATCTTCATTCATTTTATGATTAGGCACTATAAACACAT
261 ATGAGTCAAACATGGATTCTAGTAATGATCTTCATTCATTTTATGATTAGACACTATAAACACAT
* * * *
265866 TCTCCTGATTATGGTAAATGATCTTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCCATAT
326 TCTCCTCATTAGGGTAAATGATATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCCCTAT
* * * * * *
265931 TTTCTTTAAAATCAAAGTTCATTCCTTAGATAAGACAAGCAATGATTCTCGTAACAATCCCCATT
391 TTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGT-CCCATT
*
265996 CTTTTCAAGATTGAGAACCAA
455 CTTTTCAAGATTGGGAACCAA
* * * * *
266017 AAACATATTCTCTTCATTACGATACATGACATTGATGTTTTGGTGTCACAACAAAAGCTATTCTT
1 AAACATATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTATTCTT
* * * ** *
266082 TCCTCCATTTTAGATAGAATCAAAGTTTGTCTCTTAAATAAGAGTAACATGAATAGTCATACAAA
66 TCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAA
* * * *
266147 TCCCCATTCTTTTCAGGATTAGGCATCATAAACATAGTATTCTCATTAA-GATAGATGATATTGA
131 TCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTC-TTAAGGATACACGATATTGA
*** *** *
266211 TGCTTTGGTTTCAAAAGAAAGGCTTTCTTCTGTCCAATTTTTGTAAAGTCTAAGTTTATGTCTCA
195 TGCTTTGGTTTTGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTTATGCCTCA
* * * * *
266276 AATGAGTCAAACATGGATTTTAGTAATGATCGTCATTCGTTTCATGATTAGACA-TAATAAACAT
260 AATGAGTCAAACATGGATTCTAGTAATGATCTTCATTCATTTTATGATTAGACACT-ATAAACAC
* * * * * * **
266340 ATTTTCCTCTTTAGGATAAATGATGTTGATGATTTTCTTTTGCATGAAAATCTTTTTTTTGCCCT
324 ATTCTCCTCATTAGGGTAAATGATATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCCCT
* * * * * * *
266405 AATTTCCTTAAAATAAAAAATTCATCCCTTAAATATGGCAAGCATCGATTCTCATAATAGTCTCC
389 ATTTTCCTTAAAAT-CAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTC-CC
266470 ATTCTTTTCAAGATTGGGAACCAA
452 ATTCTTTTCAAGATTGGGAACCAA
* *** * *
266494 GAATGCATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGTAAGAAAAACTATTCTT
1 AAACATATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTATTCTT
** *
266559 TTAACCG-TTTTGATAGAATCAAAGTTTGTCCCTTAAATAAGACAAACATGAATAGT
66 TCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGT
266615 GAAAGCTCAA
Statistics
Matches: 3333, Mismatches: 550, Indels: 79
0.84 0.14 0.02
Matches are distributed among these distances:
473 113 0.03
474 671 0.20
475 1533 0.46
476 891 0.27
477 125 0.04
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (475 bp):
AAACATATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTATTCTT
TCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAA
TCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCTTAAGGATACACGATATTGAT
GCTTTGGTTTTGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTTATGCCTCAA
ATGAGTCAAACATGGATTCTAGTAATGATCTTCATTCATTTTATGATTAGACACTATAAACACAT
TCTCCTCATTAGGGTAAATGATATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCCCTAT
TTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCCCATTC
TTTTCAAGATTGGGAACCAA
Found at i:265068 original size:949 final size:952
Alignment explanation
Indices: 262203--266614 Score: 6095
Period size: 949 Copynumber: 4.6 Consensus size: 952
262193 ATTCATTTTG
* * * * * *
262203 AGATTAGGCACTATAAACATATTCTCC-TCCTTAGGATACATGATATTGATGCTTTGGTG-TCGA
1 AGATTAGGAACCAAAAACATATTC-CCTTCATTAGGATACATGACATTGATGCTTTGG-GATCGC
* * * * * * * *
262266 AAGAAAAGCTTTTCTTTCAACCGTTTTTGTTAGAATCAAAATTTGTTTTTTTAATAAGACGAACA
64 AAGAAAAGCTATTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACA
* * * * * **
262331 TGAAGAGTCATACTAATCCCCATTTTTTTCAAGATTAGGCATCC-TAAACGTAGGCTTCTCA-TA
129 TGAATAGTCATACAAATCCCCATTCTTTTCAGGATTAGGCA-CCATAAACATAGTATTCTCATTA
* * ** ** * *
262394 AGGATACACGATATTGGAGCTTTGGTTTTGCAAGATGGGCTTTCTTATCACTAATTTTTGTAAAG
193 A-GATAGACGATATTGGTGCTTTGGTTTTGCAAGAAAGGCTTTCTTCCCTCCAATTTTTGTAAAG
* * * * * * **
262459 TGTAAGTTCATGCCTCGAATGAGTCAAACATAGATTCAAGTAATGATCTTCATTCATTTTGTGAT
257 TCTAAGTTTATGCCTCAAATGAGTCAAACATGGATTCTAGTAATGATCGTCATTCATTTCATGAT
** * * * * * * **
262524 TAGGTACTATAAACACCTTCTCCTCATTAAGATAAATGATATTGATGATTTTATTTCACATGGAA
322 TAGACACAATAAACACATTCTCCTCTTTAGGATAAATGATGTTGATGATTTTCTTTTGCATGGAA
** * * * ** * * *
262589 A-GGTTTCTTTTACCTTATTTTCCTTAAAAT-CAATGTTCATCCCTTAAATAAGGCAAGTATTGA
387 ATCTTTTC-TTTGCCCTATTTTCCTTAAAATAAAAAATTCATCCCTTAAATATGGCAAGCATCGA
* * * * * * *
262652 TTCTCGTAACAGTC-CCATTCTTCTCAAAATTTGGAACCAA-AAAGATATTCCCTTCATTAGGAT
451 TTCTCATAATAGTCTCCATTCTTTTCAAGATTGGGAACCAAGAATG-CATTCCCTTCATTAGGAT
** ** * * * *
262715 ACATGACATTGATGCTTTGGAATCGTAAGAAAATCTATTCTTTCCACCAT-TTTTTATAGGATCA
515 ACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTATTCTTT-CAAC-TGTTTTGATAGAATCA
* * * * * *
262779 AAGTTTGTCTTTTTAATAAGACAAACATGAATAGTCAAACTAATCCCCATTCTTTTCAGGATTAG
578 AAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCTCAATCTTTTCAGAATTAG
* * ** ** * * * *
262844 GCACCACAAACATAGTCTTCTCTTAAGGATACACAATATTGACACTTTGGTTTCGCAAGAAAGGC
643 GCACCATAAACATAGTCTACTAATAAGGATACATGACATAGACGCTTTGGTTTTGCAAGAAAGGC
* * * * * *
262909 TTTC-TCCTCACCAAGTTT-TGTAAAGTCTAAGTTTGTACCTCAAATGAGTCAAACATGGATTCT
708 TTTCTTCC-CACCAA-TTTCTATAATGTCTAAGTTTGTGCCTCAAATAAGACAAACATTGATTCT
* * * * * * ** * *
262972 AGTAATAATCTTTATTCATTTTGTGATTAGGCACTATAACCACCTTCTCCCCATTAAGATAAATG
771 ACTAATGATCTTCATTCATTTTATGATTAGGCACTATAAACACATTCTCCTGATTATGGTAAATG
* * * *
263037 ATATTGATGATTTTATTTTGCATGAAAATGTTACCTTTGCCTTATTTTCCTTAAAATCAAAGTTC
836 ATATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCCATATTTTCCTTAAAATCAAAGTTC
* * * * *
263102 ATCCCTTAAAGAAGGCAAGCATTGATTCTCGTAACAGTCCCTATTCTTTTCA
901 ATCCCTTAAATAAGACAAGCAATGATTCTCGTAACAATCCCCATTCTTTTCA
* * * * * * *** *
263154 AAATTGGGAACCAAAAACATATTCCCTTCATTAGGATACATGATAATGATTCCTTAATATCGCAT
1 AGATTAGGAACCAAAAACATATTCCCTTCATTAGGATACATGACATTGATGCTTTGGGATCGCAA
* *
263219 GAAAAGCTATTCTTTCCACCGTTTTTGATAGAATTAAAGTTTATCTCTTAAATAAGACAAACATG
66 GAAAAGCTATTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATG
* * * * * *
263284 AATAGTTATACTAATCCCTATTCTTTTCAAGATTAGGCACCGTAAACATAGTCTTCTCATTAAGA
131 AATAGTCATACAAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTATTCTCATTAAGA
* * * *
263349 TAGACGATATTGATGCTTTCGTTTCGCAAGAAAGGCTTTC-TCCCTTCTAATTTTTGTAAA-TCT
196 TAGACGATATTGGTGCTTTGGTTTTGCAAGAAAGGCTTTCTTCCC-TCCAATTTTTGTAAAGTCT
** * * * * ** *
263412 AAGTTTATAACTCAAATGAGTCAAGCATTGATTCTAGTAATGATCTTCATTCTTTTTTTGATTAA
260 AAGTTTATGCCTCAAATGAGTCAAACATGGATTCTAGTAATGATCGTCATTCATTTCATGATTAG
* * * *
263477 ACACAATAAACACATTCTCATCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATC
325 ACACAATAAACACATTCTCCTCTTTAGGATAAATGATGTTGATGATTTTCTTTTGCATGGAAATC
* * *
263542 TTTTCTTTGCCCTATTTTCCTTAAAAT-CAAAATTCATCCCTTAAATATGACAAGCATCAATTCT
390 TTTTCTTTGCCCTATTTTCCTTAAAATAAAAAATTCATCCCTTAAATATGGCAAGCATCGATTCT
* * * * ** * *
263606 CGTAACAGTCTCCATTCCTTTCAAGATTAGGAACCAAGAACACATTCCCTTCTTTAAGATACATG
455 CATAATAGTCTCCATTCTTTTCAAGATTGGGAACCAAGAATGCATTCCCTTCATTAGGATACATG
* * * * * *
263671 TCATTGATGCTTTTGTGTCACAAGAAAAGATTTTCTTTCAACCGTTTTTGATAGAATCAAAATTT
520 ACATTGATGCTTTGGTGTCACAAGAAAAGCTATTCTTTCAACTG-TTTTGATAGAATCAAAGTTT
* * * *
263736 GTCCCTTTAGTAAGACAAACATGAATAGTCATACTAATCC-CTATTCTTTTCA-AGATTAGGCAC
584 GTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCTC-AATCTTTTCAGA-ATTAGGCAC
* * * * ** * * * * *
263799 CATAAACATAGAT-TTC-ACATAAGAATAAAAGGTATCGATGCTTTGATTTTGTAAGAAAGGGTT
647 CATAAACATAG-TCTACTA-ATAAGGATACATGACATAGACGCTTTGGTTTTGCAAGAAAGGCTT
* * ** * * *
263862 TCTTCCCACCAATTTTTATAATGTCTAAGATCATGCCTTAAATGAGACAAACATTGATTCTAGTA
710 TCTTCCCACCAATTTCTATAATGTCTAAGTTTGTGCCTCAAATAAGACAAACATTGATTCTACTA
* * * *
263927 ATGATCTTCATTCATTTTGTGATTAGTCACTATAAACACATTCTCCTGATTAGGGTAGATGATAT
775 ATGATCTTCATTCATTTTATGATTAGGCACTATAAACACATTCTCCTGATTATGGTAAATGATAT
* *
263992 TGACGATTTTCTTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCC
840 TGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCCATATTTTCCTTAAAATCAAAGTTCATCC
* * *
264057 CTTAAATAAGACAAACACTGATTCTCGTAACAATCCCCATTTTTTTCA
905 CTTAAATAAGACAAGCAATGATTCTCGTAACAATCCCCATTCTTTTCA
*
264105 AGATTAGGAACCAAAAACATATTCCCTTCATTATGATACATGACATTGATGCTTTGGGATCGCAA
1 AGATTAGGAACCAAAAACATATTCCCTTCATTAGGATACATGACATTGATGCTTTGGGATCGCAA
*
264170 GAAAAGCTATTCTTTCCACCGTTTTTTATAGAATCAAAGTTTGTCTCTTAAAT-AGACAAACATG
66 GAAAAGCTATTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATG
264234 AATAGTCATACAAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTATTCTCATTAAGA
131 AATAGTCATACAAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTATTCTCATTAAGA
*
264299 TAGACGATATTGGTGCTTTGGTTTTGCAAGAAAGGCTTTCTTCCCTCCAATTTTTGTAAAGTCCA
196 TAGACGATATTGGTGCTTTGGTTTTGCAAGAAAGGCTTTCTTCCCTCCAATTTTTGTAAAGTCTA
*
264364 AGTTTTTGCCTCAAATGAGTCAAACATGGATTCTAGTAATGATCGTCATTCATTTCATGATTAGA
261 AGTTTATGCCTCAAATGAGTCAAACATGGATTCTAGTAATGATCGTCATTCATTTCATGATTAGA
* * *
264429 CACAATAAACACATTCTCCTCTTTAGGGTAAATTATGTTGATGATTTTTTTTTGCATGGAAATCT
326 CACAATAAACACATTCTCCTCTTTAGGATAAATGATGTTGATGATTTTCTTTTGCATGGAAATCT
* * *
264494 TTTCTTTGCCCTATTTTCCTTAAAATAAAAAATTCATCCCATAAATTTGGCAAGCATCGATTTTC
391 TTTCTTTGCCCTATTTTCCTTAAAATAAAAAATTCATCCCTTAAATATGGCAAGCATCGATTCTC
264559 ATAATAGTCTCCATTCTTTTCAAGATTGGGAA-CAAGAATGCATTCCCTTCATTAGGATACATGA
456 ATAATAGTCTCCATTCTTTTCAAGATTGGGAACCAAGAATGCATTCCCTTCATTAGGATACATGA
*
264623 CATTTATGCTTTGGTGTCACAAGAAAAGCTATTCTTTCAACTGTTTTGATAGAATCAAAGTTTGT
521 CATTGATGCTTTGGTGTCACAAGAAAAGCTATTCTTTCAACTGTTTTGATAGAATCAAAGTTTGT
*
264688 CTCATAAATAAGACAAACATGAATAGTCATACTAATCCTCAATC-TTTCAGAATTAGGCACCATA
586 CTCTTAAATAAGACAAACATGAATAGTCATACTAATCCTCAATCTTTTCAGAATTAGGCACCATA
*
264752 AACATAGTCTACTAATAAGGATGCATGACATAGACGCTTTGGTTTTGCAAGAAAGGCTTTCTTCC
651 AACATAGTCTACTAATAAGGATACATGACATAGACGCTTTGGTTTTGCAAGAAAGGCTTTCTTCC
*
264817 CACCAATTTCTATAATGTCTAAGTTTGTGCCTCAAGTAAGACAAACATTGATTCTACTAATGATC
716 CACCAATTTCTATAATGTCTAAGTTTGTGCCTCAAATAAGACAAACATTGATTCTACTAATGATC
*
264882 TTCATTCATTTTATGATTAGGCACTATAAACACATTCTCCTGATTATGGTAAATGATCTTGATGA
781 TTCATTCATTTTATGATTAGGCACTATAAACACATTCTCCTGATTATGGTAAATGATATTGATGA
* * * *
264947 TTTTCTTTTGCATGGAAATGTTTCCTTTGCCGTATTTTCTTTAAAATCAAAGTTCATTCCTTAGA
846 TTTTCTTTTGCATGGAAATGTTTCCTTTGCCATATTTTCCTTAAAATCAAAGTTCATCCCTTAAA
265012 TAAGACAAGCAATGATTCTCGTAACAATCCCCATTCTTTTCA
911 TAAGACAAGCAATGATTCTCGTAACAATCCCCATTCTTTTCA
*
265054 AGATTAGGAACCAAAAACATATTCCCTTCATTATGATACATGACATTGATGCTTTGGGATCGCAA
1 AGATTAGGAACCAAAAACATATTCCCTTCATTAGGATACATGACATTGATGCTTTGGGATCGCAA
265119 GAAAAGCTATTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAT-AGACAAACATG
66 GAAAAGCTATTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATG
265183 AATAGTCATACAAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTATTCTCATTAAGA
131 AATAGTCATACAAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTATTCTCATTAAGA
*
265248 TAGACGATATTGGTGCTTTGGTTTTGCAAGAAAGGCTTTCTTCCCTCCAATTTTTGTAAAGTCCA
196 TAGACGATATTGGTGCTTTGGTTTTGCAAGAAAGGCTTTCTTCCCTCCAATTTTTGTAAAGTCTA
*
265313 AGTTTTTGCCTCAAATGAGTCAAACATGGATTCTAGTAATGATCGTCATTCATTTCATGATTAGA
261 AGTTTATGCCTCAAATGAGTCAAACATGGATTCTAGTAATGATCGTCATTCATTTCATGATTAGA
* * *
265378 CACAATAAACACATTCTCCTCTTTAGGGTAAATTATGTTGATGATTTTTTTTTGCATGGAAATCT
326 CACAATAAACACATTCTCCTCTTTAGGATAAATGATGTTGATGATTTTCTTTTGCATGGAAATCT
* * *
265443 TTTCTTTGCCCTATTTTCCTTAAAATAAAAAATTCATCCCATAAATTTGGCAAGCATCGATTTTC
391 TTTCTTTGCCCTATTTTCCTTAAAATAAAAAATTCATCCCTTAAATATGGCAAGCATCGATTCTC
265508 ATAATAGTCTCCATTCTTTTCAAGATTGGGAA-CAAGAATGCATTCCCTTCATTAGGATACATGA
456 ATAATAGTCTCCATTCTTTTCAAGATTGGGAACCAAGAATGCATTCCCTTCATTAGGATACATGA
*
265572 CATTTATGCTTTGGTGTCACAAGAAAAGCTATTCTTTCAACTGTTTTGATAGAATCAAAGTTTGT
521 CATTGATGCTTTGGTGTCACAAGAAAAGCTATTCTTTCAACTGTTTTGATAGAATCAAAGTTTGT
*
265637 CTCATAAATAAGACAAACATGAATAGTCATACTAATCCTCAATC-TTTCAGAATTAGGCACCATA
586 CTCTTAAATAAGACAAACATGAATAGTCATACTAATCCTCAATCTTTTCAGAATTAGGCACCATA
*
265701 AACATAGTCTACTAATAAGGATGCATGACATAGACGCTTTGGTTTTGCAAGAAAGGCTTTCTTCC
651 AACATAGTCTACTAATAAGGATACATGACATAGACGCTTTGGTTTTGCAAGAAAGGCTTTCTTCC
*
265766 CACCAATTTCTATAATGTCTAAGTTTGTGCCTCAAGTAAGACAAACATTGATTCTACTAATGATC
716 CACCAATTTCTATAATGTCTAAGTTTGTGCCTCAAATAAGACAAACATTGATTCTACTAATGATC
*
265831 TTCATTCATTTTATGATTAGGCACTATAAACACATTCTCCTGATTATGGTAAATGATCTTGATGA
781 TTCATTCATTTTATGATTAGGCACTATAAACACATTCTCCTGATTATGGTAAATGATATTGATGA
* * *
265896 TTTTCTTTTGCATGGAAATGTTTCCTTTGCCATATTTTCTTTAAAATCAAAGTTCATTCCTTAGA
846 TTTTCTTTTGCATGGAAATGTTTCCTTTGCCATATTTTCCTTAAAATCAAAGTTCATCCCTTAAA
265961 TAAGACAAGCAATGATTCTCGTAACAATCCCCATTCTTTTCA
911 TAAGACAAGCAATGATTCTCGTAACAATCCCCATTCTTTTCA
* * * *
266003 AGATT-GAGAACCAAAAACATATTCTCTTCATTACGATACATGACATTGATGTTTTGGTG-TCAC
1 AGATTAG-GAACCAAAAACATATTCCCTTCATTAGGATACATGACATTGATGCTTTGG-GATCGC
* * * * **
266066 AACAAAAGCTATTCTTTCCTCCATTTTAGATAGAATCAAAGTTTGTCTCTTAAATAAGAGTAACA
64 AAGAAAAGCTATTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACA
*
266131 TGAATAGTCATACAAATCCCCATTCTTTTCAGGATTAGGCATCATAAACATAGTATTCTCATTAA
129 TGAATAGTCATACAAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTATTCTCATTAA
* * *** **
266196 GATAGATGATATTGATGCTTTGGTTTCAAAAGAAAGGCTTTCTTCTGTCCAATTTTTGTAAAGTC
194 GATAGACGATATTGGTGCTTTGGTTTTGCAAGAAAGGCTTTCTTCCCTCCAATTTTTGTAAAGTC
* * *
266261 TAAGTTTATGTCTCAAATGAGTCAAACATGGATTTTAGTAATGATCGTCATTCGTTTCATGATTA
259 TAAGTTTATGCCTCAAATGAGTCAAACATGGATTCTAGTAATGATCGTCATTCATTTCATGATTA
* * * *
266326 GACATAATAAACATATTTTCCTCTTTAGGATAAATGATGTTGATGATTTTCTTTTGCATGAAAAT
324 GACACAATAAACACATTCTCCTCTTTAGGATAAATGATGTTGATGATTTTCTTTTGCATGGAAAT
* *
266391 CTTTTTTTTGCCCTAATTTCCTTAAAATAAAAAATTCATCCCTTAAATATGGCAAGCATCGATTC
389 CTTTTCTTTGCCCTATTTTCCTTAAAATAAAAAATTCATCCCTTAAATATGGCAAGCATCGATTC
266456 TCATAATAGTCTCCATTCTTTTCAAGATTGGGAACCAAGAATGCATTCCCTTCATTAGGATACAT
454 TCATAATAGTCTCCATTCTTTTCAAGATTGGGAACCAAGAATGCATTCCCTTCATTAGGATACAT
** * * *
266521 GACATTGATGCTTTGGTGTCGTAAGAAAAACTATTCTTTTAACCGTTTTGATAGAATCAAAGTTT
519 GACATTGATGCTTTGGTGTCACAAGAAAAGCTATTCTTTCAACTGTTTTGATAGAATCAAAGTTT
*
266586 GTCCCTTAAATAAGACAAACATGAATAGT
584 GTCTCTTAAATAAGACAAACATGAATAGT
266615 GAAAGCTCAA
Statistics
Matches: 3142, Mismatches: 292, Indels: 54
0.90 0.08 0.02
Matches are distributed among these distances:
948 2 0.00
949 1336 0.43
950 706 0.22
951 1029 0.33
952 69 0.02
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (952 bp):
AGATTAGGAACCAAAAACATATTCCCTTCATTAGGATACATGACATTGATGCTTTGGGATCGCAA
GAAAAGCTATTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATG
AATAGTCATACAAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTATTCTCATTAAGA
TAGACGATATTGGTGCTTTGGTTTTGCAAGAAAGGCTTTCTTCCCTCCAATTTTTGTAAAGTCTA
AGTTTATGCCTCAAATGAGTCAAACATGGATTCTAGTAATGATCGTCATTCATTTCATGATTAGA
CACAATAAACACATTCTCCTCTTTAGGATAAATGATGTTGATGATTTTCTTTTGCATGGAAATCT
TTTCTTTGCCCTATTTTCCTTAAAATAAAAAATTCATCCCTTAAATATGGCAAGCATCGATTCTC
ATAATAGTCTCCATTCTTTTCAAGATTGGGAACCAAGAATGCATTCCCTTCATTAGGATACATGA
CATTGATGCTTTGGTGTCACAAGAAAAGCTATTCTTTCAACTGTTTTGATAGAATCAAAGTTTGT
CTCTTAAATAAGACAAACATGAATAGTCATACTAATCCTCAATCTTTTCAGAATTAGGCACCATA
AACATAGTCTACTAATAAGGATACATGACATAGACGCTTTGGTTTTGCAAGAAAGGCTTTCTTCC
CACCAATTTCTATAATGTCTAAGTTTGTGCCTCAAATAAGACAAACATTGATTCTACTAATGATC
TTCATTCATTTTATGATTAGGCACTATAAACACATTCTCCTGATTATGGTAAATGATATTGATGA
TTTTCTTTTGCATGGAAATGTTTCCTTTGCCATATTTTCCTTAAAATCAAAGTTCATCCCTTAAA
TAAGACAAGCAATGATTCTCGTAACAATCCCCATTCTTTTCA
Found at i:267506 original size:20 final size:20
Alignment explanation
Indices: 267462--267533 Score: 112
Period size: 20 Copynumber: 3.6 Consensus size: 20
267452 ACAATTGTCT
*
267462 ATGTATCGATACAATG-A-A
1 ATGTATCGATACAAAGCATA
267480 CATGTATCGATACAAAGCATA
1 -ATGTATCGATACAAAGCATA
267501 ATGTATCGATACAAAGCATA
1 ATGTATCGATACAAAGCATA
267521 ATGTATCGATACA
1 ATGTATCGATACA
267534 TCTGGGTGTG
Statistics
Matches: 50, Mismatches: 1, Indels: 3
0.93 0.02 0.06
Matches are distributed among these distances:
19 15 0.30
20 34 0.68
21 1 0.02
ACGTcount: A:0.43, C:0.15, G:0.15, T:0.26
Consensus pattern (20 bp):
ATGTATCGATACAAAGCATA
Found at i:269392 original size:13 final size:13
Alignment explanation
Indices: 269374--269403 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
269364 AATAGTACCT
269374 AATGTATCGATAC
1 AATGTATCGATAC
269387 AATGTATCGATAC
1 AATGTATCGATAC
269400 AATG
1 AATG
269404 AATGTTGTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.40, C:0.13, G:0.17, T:0.30
Consensus pattern (13 bp):
AATGTATCGATAC
Found at i:275470 original size:19 final size:20
Alignment explanation
Indices: 275433--275470 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
275423 TCCCGTAGCT
275433 ATGTATCGATACAATTGATA
1 ATGTATCGATACAATTGATA
275453 ATGTATCGATAC-ATTGAT
1 ATGTATCGATACAATTGAT
275471 TTGAAATTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 6 0.33
20 12 0.67
ACGTcount: A:0.37, C:0.11, G:0.16, T:0.37
Consensus pattern (20 bp):
ATGTATCGATACAATTGATA
Found at i:275660 original size:13 final size:13
Alignment explanation
Indices: 275642--275666 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
275632 TAATGAACAC
275642 GTATCGATACAAT
1 GTATCGATACAAT
275655 GTATCGATACAA
1 GTATCGATACAA
275667 AGCATAATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.28
Consensus pattern (13 bp):
GTATCGATACAAT
Found at i:277581 original size:476 final size:476
Alignment explanation
Indices: 275974--278109 Score: 2708
Period size: 474 Copynumber: 4.5 Consensus size: 476
275964 GATCCTAACA
* *
275974 AATAGTCATACTAATCCCCAA-TCTTTGT--AGAATTAGGCACCATAAACATAGTCTACTAATGA
1 AATAGTCATACTAAT-CCCAATTCTTT-TCAAG-ATTAGGCACCATAAACATAGTCTTCTAATAA
*
276036 GGACACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACTAATTTTTATAATGT
63 GGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACTAATTTTTATAATGT
* * * *
276101 CTAAGTTCGTGCCTTAAATGAGGCAAACATGGATTCTAGTAATGTTCTTCATTCCTTTCGTGATT
128 CTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCGTGATT
* *
276166 AGACACAATAAAAACATTTTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAA
193 AGACACAATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAA
* * * * *
276231 TCTTTTCTTTGCCTTATTTTCCTTACAATCAAAATTCATCCCTTATATGTGACGAGCATCGATTC
258 TCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCGATTC
* * *
276296 TCGTAACAGTCTCTATTCTTTTTAAGATTGGGAACCAAGAATGCATTCCCTTCATTCA-GATACA
323 TCGTAACAATCTCCATTCTTTTCAAGATTGGGAACCAAGAATGCATTCCCTTCATT-AGGATACA
* *
276360 TGACATTGA--CCTTGGTGTCACAAGAAAAGCTTTTCTTTCAACCGTTTTGGTTACAATCAAAGT
387 TGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCAACCGTTTTGGTTAGAATCAAAGT
*
276423 TTATCTCTTCAACAAGACAAACATG
452 TTATCTCTTCAATAAGACAAACATG
* * * * * **
276448 AAAAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATTGTATTCTCTTTAA-G
1 AATAGTCATACTAATCCCAATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCT-AATAAGG
* * * * * * *
276512 ATAGACGGTATTGATGCTTTGGTTTCGTAAGAAAGGATTTCTTCCCTCTAATTTTTGTAAAGTCT
65 ATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACTAATTTTTATAATGTCT
* ** * *
276577 AAATTTATGCCTCAAATGAGTCAAACATGGATTCTAGTAATGATCTTCATTCATTTCGTGATTTG
130 AAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCGTGATTAG
* * *
276642 ACACAATAAACACATTCTCGTCGTTAGGATAAAT-ATTGTTGATGATTTTCTTTTGCATGGAAAT
195 ACACAATAAACACATTCTCCTCATTAGGATAAATGA-TATTGATGATTTTCTTTTGCATGGAAAT
* ** *
276706 CTTTTCTTTGCCCTAATTTCCTTAAAATCAAAATTCATCGTTTAAATATGACATGCATCGATTCT
259 CTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCGATTCT
*
276771 CGTAACAATCTCCATTCATTTT-AAGATTGGGAACCAAGAATGCATTCCCTTTATTAGGATACAT
324 CGTAACAATCTCCATTC-TTTTCAAGATTGGGAACCAAGAATGCATTCCCTTCATTAGGATACAT
* * ** * *
276835 GAC-TTGATGCTTTAGTATTGCAAGAAAAGCTATTCTTTCAACCGTTTT-GATAGAATCAAAGTT
388 GACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCAACCGTTTTGGTTAGAATCAAAGTT
* * * *
276898 TGTCTCTTAAATGAGACAAACGTG
453 TATCTCTTCAATAAGACAAACATG
* * * *
276922 AATAGTCATACTAATCCCTAA-TCTTTTC-AGAATTAGGCACTATAAACACAGTCTACTAATATG
1 AATAGTCATACTAATCCC-AATTCTTTTCAAG-ATTAGGCACCATAAACATAGTCTTCTAATAAG
* * *
276985 GAAACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCGTCCCACTAATATTTATAATGTC
64 GATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACTAATTTTTATAATGTC
* *
277050 TAAGTTCGTGCCTTAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCATGATTA
129 TAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCGTGATTA
*
277115 GACACAATAAAAACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAAT
194 GACACAATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAAT
* *
277180 CTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGGCAAGCATTGATTCT
259 CTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCGATTCT
* * * *
277245 CATAACAGTCTCTATTCTTTTCAAGATTAGGAACCAAGAATGCATTCCCTTCATTAGGATACATG
324 CGTAACAATCTCCATTCTTTTCAAGATTGGGAACCAAGAATGCATTCCCTTCATTAGGATACATG
* *
277310 ACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCAACTGTTTTGGCTAGAATCAAAGTTT
389 ACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCAACCGTTTTGGTTAGAATCAAAGTTT
*
277375 GTCTCTTCAATAAGACAAACATG
454 ATCTCTTCAATAAGACAAACATG
* * * * *
277398 AATATTTATACTAATCCCAATTCTTTTCAAGATTAGGCACTATAAACATTGTCTTCTTATAAGGA
1 AATAGTCATACTAATCCCAATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTAATAAGGA
* * * *
277463 TACACGATATCGATGCTTTGGTTTCGCAATAAAGACTTTCTTCCCACCAATTTTTATAATGTCTA
66 TACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACTAATTTTTATAATGTCTA
* * * *
277528 AGTTCGTGCCTCAAATGAGACAAACACT-GATTCTTGTAATGATCATCATTCATTTTGTAATTAG
131 AGTTCGTGCCTCAAATGAGACAAACA-TGGATTCTAGTAATGATCTTCATTCATTTCGTGATTAG
* * * * *
277592 GCACTACAAACACATTCTCCTCATTAGGGTAAA-CAGTATTGATGATTTGT-TTTTGCATGGAGA
195 ACACAATAAACACATTCTCCTCATTAGGATAAATGA-TATTGATGATTT-TCTTTTGCATGGA-A
* * * * * * ** * * *
277655 A-GTTTCCTTTACCCTTTTTTCCTTAAAATCAAAGTTTATCTGTTAAATAAGGCAAGCATTGATT
257 ATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCGATT
* * * * ** * * *
277719 GTCGTAAAAATCTCCATTCTTTTCATGATTGGGAACCAAAAACACAATCCTTTTATTAGGATACA
322 CTCGTAACAATCTCCATTCTTTTCAAGATTGGGAACCAAGAATGCATTCCCTTCATTAGGATACA
** * * * *
277784 TGACATTGATGCTTTGGTGTTGCTAGAAAAGCTTTCCTTTCAACCGTTTTTGTTAGAATTAAAGT
387 TGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCAACCGTTTTGGTTAGAATCAAAGT
* *
277849 TTATCTCTTTAATAAGATAAACATG
452 TTATCTCTTCAATAAGACAAACATG
* * *
277874 AATAGTCATACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACACAGTCTTCTCATAAGGA
1 AATAGTCATACTAATCCCAATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTAATAAGGA
* * * ** * * *
277939 TACACGATATTGATGCATTGTTTTCACTGGAAAGGTTTTCTTCCCACCAATTTTTATAATATCTA
66 TACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACTAATTTTTATAATGTCTA
* * * * * *
278004 GGTTCAG-GCCTCAATTGAGACCAACATGGATTCTACTAAAGATCTTCATTCATTTTGTGATTAG
131 AGTTC-GTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCGTGATTAG
* *** * *
278068 GCATTGT-AACATATTCTCCTCCTTAGGATAAATGATATTGAT
195 ACACAATAAACACATTCTCCTCATTAGGATAAATGATATTGAT
278110 TGTCGTGACG
Statistics
Matches: 1438, Mismatches: 199, Indels: 49
0.85 0.12 0.03
Matches are distributed among these distances:
473 18 0.01
474 692 0.48
475 114 0.08
476 607 0.42
477 7 0.00
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.36
Consensus pattern (476 bp):
AATAGTCATACTAATCCCAATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTAATAAGGA
TACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACTAATTTTTATAATGTCTA
AGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCGTGATTAGA
CACAATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCT
TTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCGATTCTCG
TAACAATCTCCATTCTTTTCAAGATTGGGAACCAAGAATGCATTCCCTTCATTAGGATACATGAC
ATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCAACCGTTTTGGTTAGAATCAAAGTTTAT
CTCTTCAATAAGACAAACATG
Found at i:277951 original size:159 final size:159
Alignment explanation
Indices: 276823--277954 Score: 453
Period size: 159 Copynumber: 7.1 Consensus size: 159
276813 CATTCCCTTT
* * * * * *
276823 ATTAGGATACATGA-CTTGATGCTTTAGTATTGCAAGAAAAGCTATT-CTTTCAACCG-TTTTGA
1 ATTAGGATACACGATATTGATGCTTTGGTGTTGCTAGAAAAGCT-TTCCTTTCAACCGTTTTTGT
* * * * * *
276885 TAGAATCAAAGTTTGTCTCTTAAATGAGACAAAC-GTGAATAGTCATACTAATCCCTAATCTTTT
65 TAGAATCAAAGTTTATCTCTTAAATAAGACAAACACTG-ATAGTCATAATAATCCCCATTCTTTT
* *
276949 C-AGAATTAGGCACTATAAACACAGTCTACT-
129 CAAG-ATTAGGCACCATAAACACAGTCTTCTC
* * * * * * * * *
276979 AATATGGAAACACGATATTGATGCTTTGGT-TTCGCAAGAAAGGCTTT-CGTCCCA-C-TAATAT
1 ATTA-GGATACACGATATTGATGCTTTGGTGTT-GCTAGAAAAGCTTTCCTTTCAACCGT-TTTT
* * ** * * **
277040 -TTATAATGTCTAAGTTCGTGC-CTTAAATGAGACAAACA-TGGAT--TCTAGTAATGATCTTCA
63 GTTAGAA--TCAAAGTTTAT-CTCTTAAATAAGACAAACACT-GATAGTC-A-TAATAATCCCCA
* * * * * * *
277100 TTCATTTCATGATTAGACACAATAAAAACATTCTCCTC
122 TTCTTTTCAAGATTAGGCACCATAAACACAGTCTTCTC
* * * ** * * * *
277138 ATTAGGATAAATGATATTGATGATTTTCTTTTGC-ATGGAAATCTTTTCTTTGC--CC-TATTTT
1 ATTAGGATACACGATATTGATGCTTTGGTGTTGCTA-GAAAAGCTTTCCTTT-CAACCGT-TTTT
* * * * * * * * * ** * * * *
277199 CCTTAAAATCAAAATTCATCCCTTAAATATGGCAAGCATTGATTCTCATAACAGTCTCTATTCTT
63 -GTTAGAATCAAAGTTTATCTCTTAAATAAGACAAACACTGATAGTCATAATAATCCCCATTCTT
* ** * *
277264 TTCAAGATTAGGAACCA-AGAATGCATTC-CCTTC
127 TTCAAGATTAGGCACCATA-AACACAGTCTTC-TC
* * ** * * * * *
277297 ATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCAACTGTTTTGGCT
1 ATTAGGATACACGATATTGATGCTTTGGTGTTGCTAGAAAAGCTTTCCTTTCAACCGTTTTTGTT
* * * * * *
277362 AGAATCAAAGTTTGTCTCTTCAATAAGACAAACA-TGAATATTTATACTAATCCCAATTCTTTTC
66 AGAATCAAAGTTTATCTCTTAAATAAGACAAACACTG-ATAGTCATAATAATCCCCATTCTTTTC
* ** *
277426 AAGATTAGGCACTATAAACATTGTCTTCTT
130 AAGATTAGGCACCATAAACACAGTCTTCTC
* * * * *
277456 ATAAGGATACACGATATCGATGCTTTGGT-TTCGC-A-ATAAAGACTTT-CTTCCCACCAATTTT
1 ATTAGGATACACGATATTGATGCTTTGGTGTT-GCTAGA-AAAG-CTTTCCTTTCAACC-GTTTT
* * * ** * * ** ** * **
277517 T-ATA-ATGTCTAAGTTCGTGC-CTCAAATGAGACAAACACTGATTCTTGTAATGATCATCATTC
62 TGTTAGA-ATCAAAGTTTAT-CTCTTAAATAAGACAAACACTGATAGTCATAATAATCCCCATTC
** * * * *
277579 ATTTTGTA-ATTAGGCACTACAAACACATTCTCCTC
125 -TTTTCAAGATTAGGCACCATAAACACAGTCTTCTC
* * * * * * * * *
277614 ATTAGGGTAAAC-AGTATTGATGATTTGTTTTTGCATGGAGAAG-TTTCCTTT-ACCCTTTTTTC
1 ATTAGGATACACGA-TATTGATGCTTTGGTGTTGC-TAGAAAAGCTTTCCTTTCAACCGTTTTT-
* * * * * * * * * *
277676 CTTAAAATCAAAGTTTATCTGTTAAATAAGGCAAGCATTGATTGTCGTAAAAATCTCCATTCTTT
63 GTTAGAATCAAAGTTTATCTCTTAAATAAGACAAACACTGATAGTCATAATAATCCCCATTCTTT
* * * * * *
277741 TCATGATTGGGAACCAAAAACACAATCCTT-TT
128 TCAAGATTAGGCACCATAAACACAGT-CTTCTC
* *
277773 ATTAGGATACATGACATTGATGCTTTGGTGTTGCTAGAAAAGCTTTCCTTTCAACCGTTTTTGTT
1 ATTAGGATACACGATATTGATGCTTTGGTGTTGCTAGAAAAGCTTTCCTTTCAACCGTTTTTGTT
* * * *
277838 AGAATTAAAGTTTATCTCTTTAATAAGATAAACA-TGAATAGTCATACTAATCCCCATTCTTTTC
66 AGAATCAAAGTTTATCTCTTAAATAAGACAAACACTG-ATAGTCATAATAATCCCCATTCTTTTC
277902 AAGATTAGGCACCATAAACACAGTCTTCTC
130 AAGATTAGGCACCATAAACACAGTCTTCTC
*
277932 ATAAGGATACACGATATTGATGC
1 ATTAGGATACACGATATTGATGC
277955 ATTGTTTTCA
Statistics
Matches: 709, Mismatches: 208, Indels: 115
0.69 0.20 0.11
Matches are distributed among these distances:
156 10 0.01
157 28 0.04
158 236 0.33
159 401 0.57
160 25 0.04
161 9 0.01
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (159 bp):
ATTAGGATACACGATATTGATGCTTTGGTGTTGCTAGAAAAGCTTTCCTTTCAACCGTTTTTGTT
AGAATCAAAGTTTATCTCTTAAATAAGACAAACACTGATAGTCATAATAATCCCCATTCTTTTCA
AGATTAGGCACCATAAACACAGTCTTCTC
Found at i:281341 original size:20 final size:20
Alignment explanation
Indices: 281316--281429 Score: 111
Period size: 20 Copynumber: 5.5 Consensus size: 20
281306 TAACTAGATT
281316 TATCGATACATTGAACAATG
1 TATCGATACATTGAACAATG
* *
281336 TATCGATACATCTTGGTAGAATG
1 TATCGATACA--TT-GAACAATG
* *
281359 TATCGATACAATGAAGAATG
1 TATCGATACATTGAACAATG
* * * *
281379 TATCAATACATTCATCCATG
1 TATCGATACATTGAACAATG
*
281399 TATCGATACATTGAAAAATG
1 TATCGATACATTGAACAATG
*
281419 TATCGACACAT
1 TATCGATACAT
281430 CCGGGTAAAA
Statistics
Matches: 75, Mismatches: 16, Indels: 6
0.77 0.16 0.06
Matches are distributed among these distances:
20 56 0.75
21 1 0.01
22 2 0.03
23 16 0.21
ACGTcount: A:0.39, C:0.16, G:0.15, T:0.31
Consensus pattern (20 bp):
TATCGATACATTGAACAATG
Found at i:281364 original size:43 final size:42
Alignment explanation
Indices: 281316--281430 Score: 126
Period size: 40 Copynumber: 2.8 Consensus size: 42
281306 TAACTAGATT
* ** *
281316 TATCGATACATTGAACAATGTATCGATACATCTTGGTAGAATG
1 TATCGATACATTGAAAAATGTATCGATACATCTTCAT-CAATG
* * * *
281359 TATCGATACAATGAAGAATGTATCAATACA--TTCATCCATG
1 TATCGATACATTGAAAAATGTATCGATACATCTTCATCAATG
*
281399 TATCGATACATTGAAAAATGTATCGACACATC
1 TATCGATACATTGAAAAATGTATCGATACATC
281431 CGGGTAAAAA
Statistics
Matches: 59, Mismatches: 11, Indels: 5
0.79 0.15 0.07
Matches are distributed among these distances:
40 29 0.49
41 3 0.05
43 27 0.46
ACGTcount: A:0.38, C:0.17, G:0.15, T:0.30
Consensus pattern (42 bp):
TATCGATACATTGAAAAATGTATCGATACATCTTCATCAATG
Found at i:283091 original size:476 final size:476
Alignment explanation
Indices: 281998--289116 Score: 9687
Period size: 475 Copynumber: 15.0 Consensus size: 476
281988 TGGTGTCTAC
* ** * * * * *
281998 ATTGATGATTTTCTTTTGTGTGGAAATCTTTTCTTTGCCCAATTTTCCTTAAAATCAAAATTCAC
1 ATTGATGATTTTATTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCTTAAAATCAAAGTTCAT
* * * * **
282063 CCCTTAAATATGACAAGCACTGATTCTCATAACAGTCCCCATTCTTTTCAAGATTGGGAATTAAA
66 CTCTTAAATAAGGCAAGCACTGATTCTCGTAACAGTCCCCATTCTTTTCAAGATTGGGAACCAAA
* *
282128 AACATATTCCCTTCCTTAGGATACATGACATTGATGCTTTGGGATCGCAAGAAAAGCTATTCTTT
131 ACCATATTCCCTTCATTAGGATACATGACATTGATGCTTTGGGATCGCAAGAAAAGCTATTCTTT
* * *
282193 CCACCGTTTTTCATAGAATTAAAGTTTGTCTCCTAAATAAGACAAACATGAATAGTCATACTAAT
196 CCACCATTTTTGATAGAATCAAAGTTTGTCTCCTAAATAAGACAAACATGAATAGTCATACTAAT
* * * *
282258 TCCCATTCTTTTCAGGATTAGGCACCACAAACGTAGTCTTCTCATAAGGATACATGATATTGATG
261 CCCCATTCTTTTCAGGATTAGGCACCACAAACATAGTCTTCTCATAAGGATACACGATATTGACG
* **
282323 CTTTGGTTTCGCAAGAAAGGCTTTCT-CCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTGTAA
326 CTTTGGTTTCGCAAGAAAGGCTTTCTCCCCACCAATTTTTGTAAAGTCTAAGTCCGTGCCTCAAA
* * * * *
282387 TGAGACAAACATGGATTCAAGTAACAA-CGTTCATTCATTTTCTGATTAGGCATTACAAACACAT
391 TGAGTCAAACATGGATTCTAGTAATAATC-TTCATTCATTTTGTGATTAGGCACTACAAACACAT
*
282451 TCTTCTCATTAGGATAAATGAT
455 TCTCCTCATTAGGATAAATGAT
* * * *
282473 ATTGATAATTTTATTTTGCATGGAAATGTCTCATTTGCCCTATTTTCCTTAAAATCAAAGTTTAT
1 ATTGATGATTTTATTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCTTAAAATCAAAGTTCAT
* * * * *
282538 CTCTTAAATAAGGCAAGCACTGATTCTCATAACACTCCCCGTTTTTTTCAAGATTAGGAACCAAA
66 CTCTTAAATAAGGCAAGCACTGATTCTCGTAACAGTCCCCATTCTTTTCAAGATTGGGAACCAAA
*
282603 ACCATATTCCCTTCATTAGGATACATGACATTGATGCTTTGGGAACGCAAGAAAAGCTATTCTTT
131 ACCATATTCCCTTCATTAGGATACATGACATTGATGCTTTGGGATCGCAAGAAAAGCTATTCTTT
* *
282668 CCACTATTTTTCATAGAATCAAAGTTTGTCTCCTAAATAAGACAAACATGAATAGTCATACTAAT
196 CCACCATTTTTGATAGAATCAAAGTTTGTCTCCTAAATAAGACAAACATGAATAGTCATACTAAT
* * * * * * *
282733 CCACATTCTTTTTAAGATAAGGCACGACAAACATAGTCTTCTCCTAAGGATACACGATATTGATG
261 CCCCATTCTTTTCAGGATTAGGCACCACAAACATAGTCTTCTCATAAGGATACACGATATTGACG
* **
282798 CTTTGGTTTCGCAAGAAAGGCTTTCTCCCCACCAATTTTTGTAAAGTCTAAATCTATGCCTCAAA
326 CTTTGGTTTCGCAAGAAAGGCTTTCTCCCCACCAATTTTTGTAAAGTCTAAGTCCGTGCCTCAAA
** * *
282863 T-ATGTCAAAGTTGGATTCTAGTAATAATCTTCATTCACTTTGTGATTAGGCACTACAAACACCT
391 TGA-GTCAAACATGGATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACTACAAACACAT
*
282927 TCTCCTCATTAGGATAGATGAT
455 TCTCCTCATTAGGATAAATGAT
* * *
282949 ATTGATGATTTTATTTTGCATGAAAATGTTTCCTTTACCCTATTTTCCTTGAAATCAAAGTTCAT
1 ATTGATGATTTTATTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCTTAAAATCAAAGTTCAT
* ** *
283014 CTCTTAAATAAGGCAAGCACTAATTCTCAAAACAGTCCCCGTTCTTTTCAAGATTGGGAACCAAA
66 CTCTTAAATAAGGCAAGCACTGATTCTCGTAACAGTCCCCATTCTTTTCAAGATTGGGAACCAAA
* *
283079 ACCATATTCCCTTCATTAGGATACATGACATTAATGCTTTGGGATCACAAGAAAAGCTATTCTTT
131 ACCATATTCCCTTCATTAGGATACATGACATTGATGCTTTGGGATCGCAAGAAAAGCTATTCTTT
* * *
283144 CCACCGTTTTTCATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAAT
196 CCACCATTTTTGATAGAATCAAAGTTTGTCTCCTAAATAAGACAAACATGAATAGTCATACTAAT
* *
283209 CTCCATTCTTTTCAGGATTAGGCACCACAAACATAGTCTTCTCATAAGGATACA-GATATTGATG
261 CCCCATTCTTTTCAGGATTAGGCACCACAAACATAGTCTTCTCATAAGGATACACGATATTGACG
* * * * *
283273 CTTTGG-TTCTGCATGGAAGCCTTTCTCCTCACCAATTTTTGTAAAGTCTAAGTCCGTGCCTTAA
326 CTTTGGTTTC-GCAAGAAAGGCTTTCTCCCCACCAATTTTTGTAAAGTCTAAGTCCGTGCCTCAA
*
283337 ATGAGTCAAACATGGATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACTACAAACACCT
390 ATGAGTCAAACATGGATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACTACAAACACAT
*
283402 TCTACTCATTAGGATAAATGAT
455 TCTCCTCATTAGGATAAATGAT
** * *
283424 ATTGATGATTTTATTTTGTGTGAAAATGTTTCCTTTGCCCTATTTTCCTTAAAATCCAAGTTCAT
1 ATTGATGATTTTATTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCTTAAAATCAAAGTTCAT
* * * * *
283489 CCCTTAAA-ACAAGCAAGCATTGATTCTTGTAACAGTCCCCATTCTTCTCAAGATTGGGAACCAA
66 CTCTTAAATA-AGGCAAGCACTGATTCTCGTAACAGTCCCCATTCTTTTCAAGATTGGGAACCAA
* *
283553 ATA-CATATTCCCTTCATTAGGATACATGACATTGACGCTTTGGGATCACAAGAAAAGCTATT-T
130 A-ACCATATTCCCTTCATTAGGATACATGACATTGATGCTTTGGGATCGCAAGAAAAGCTATTCT
* * * * * * *
283616 TTCCATCGTTTTGGATAGAATCAAAGTTTGTGTCTTAAATAAGATAAACATAAATAGTCATACTA
194 TTCCACCATTTTTGATAGAATCAAAGTTTGTCTCCTAAATAAGACAAACATGAATAGTCATACTA
*
283681 ATCCCCATTCTTTTCAGGATTAGGCACCACAAACATAGCCTTCTCATAAGGATACACGATATTGA
259 ATCCCCATTCTTTTCAGGATTAGGCACCACAAACATAGTCTTCTCATAAGGATACACGATATTGA
* * ** * * *
283746 TGCTTTGGTTTCGCAAGAAAAGCTTTCTCCCTTCCAATTTTTGTAAATTTTAAGTCCGTACCTCA
324 CGCTTTGGTTTCGCAAGAAAGGCTTTCTCCCCACCAATTTTTGTAAAGTCTAAGTCCGTGCCTCA
* * * *
283811 AATGAGTCAAACATGGATCCTAGTAATGATCTTCAGTCATTTTGTGATTAGGCACTATAAACACA
389 AATGAGTCAAACATGGATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACTACAAACACA
* * *
283876 TTCTACTCCTTTGGATAAATGAT
454 TTCTCCTCATTAGGATAAATGAT
* * * * * * * *
283899 ATTGACGATTTTTTTTTGCATGGAAATCTTTTCTTTACCCAATTTTCCTTAAAATCAAAATTCAC
1 ATTGATGATTTTATTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCTTAAAATCAAAGTTCAT
* * * * * * *
283964 CCCTTAAATATGACAAGCACTGATCCTCATAACAGTCCCCATTATTCTCAAGATTGGGAACCAAA
66 CTCTTAAATAAGGCAAGCACTGATTCTCGTAACAGTCCCCATTCTTTTCAAGATTGGGAACCAAA
* * * * * ** *
284029 ACCAGAATCCCTTCATTAGGATACATGACATTGATGCTTTAGGATCGGATGAAAAGCGCTTTTTT
131 ACCATATTCCCTTCATTAGGATACATGACATTGATGCTTTGGGATCGCAAGAAAAGCTATTCTTT
** * * *
284094 CCGTCGTTTTTCATAGAATCAAAGTTTGTCTCCTAAATAAGACAAACATGAATACTCATACTAAT
196 CCACCATTTTTGATAGAATCAAAGTTTGTCTCCTAAATAAGACAAACATGAATAGTCATACTAAT
* *
284159 CCCCATTCTTTTCAGGATTAGGCACTACAAACATAGT-TTCTCATAAGGATACACGATATTGATG
261 CCCCATTCTTTTCAGGATTAGGCACCACAAACATAGTCTTCTCATAAGGATACACGATATTGACG
* ** * *
284223 CTTTGGTTTCTCAAGAAAGGCTTTCTCCCCACCAATTTTTGTAAAGTCTTGGTCCATGCCTCGAA
326 CTTTGGTTTCGCAAGAAAGGCTTTCTCCCCACCAATTTTTGTAAAGTCTAAGTCCGTGCCTCAAA
*
284288 TGAGTCAAACATGGATTCTAGTAATAATCTTCATTCATTTTGTGATTAAGCACTACAAACACATT
391 TGAGTCAAACATGGATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACTACAAACACATT
* **
284353 TTCCTCATTACTATAAATGAT
456 CTCCTCATTAGGATAAATGAT
* * *
284374 ATTGATGATTTTATTTTGCATGGAAATGTTTTCTTTACCCTATTTTACTTAAAATCAAAGTTCAT
1 ATTGATGATTTTATTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCTTAAAATCAAAGTTCAT
* * * * * *
284439 CTCCTAAATAAGGCAAGTACTGATTCTTGTAATAGTCCTCGTTCTTTTCAAGATTGGGAACCAAA
66 CTCTTAAATAAGGCAAGCACTGATTCTCGTAACAGTCCCCATTCTTTTCAAGATTGGGAACCAAA
** * * * *
284504 ACCATCGTCCCTTCATTAGCATACATGACATTGATGCTTTAGGATCACAAGAAAAGCTATTGTTT
131 ACCATATTCCCTTCATTAGGATACATGACATTGATGCTTTGGGATCGCAAGAAAAGCTATTCTTT
* * * * * *
284569 TCACCGTTTTTGATAGAATCAAAGTTTGTGTCTTAAACAAGACAAACACGAATAGTCATACTAAT
196 CCACCATTTTTGATAGAATCAAAGTTTGTCTCCTAAATAAGACAAACATGAATAGTCATACTAAT
284634 CCCCATTCCTTTT-AGGATTAGGCACCACAAACATAGTCTTCTCATAAGGATACACGATATTGAC
261 CCCCATT-CTTTTCAGGATTAGGCACCACAAACATAGTCTTCTCATAAGGATACACGATATTGAC
* * * * * * *
284698 GCTTTTGTTTTGCATGAAAGGCTTTCTCCCTACCAATTTTTGTAAAGTCTAAATCCATGCCTTAA
325 GCTTTGGTTTCGCAAGAAAGGCTTTCTCCCCACCAATTTTTGTAAAGTCTAAGTCCGTGCCTCAA
* * * *
284763 ATGTGTGAAACATGCATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACTACAAACACCT
390 ATGAGTCAAACATGGATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACTACAAACACAT
* *
284828 TCTGCTCATTAGGATAGATGAT
455 TCTCCTCATTAGGATAAATGAT
*
284850 ATTGATGATTTTATTTTGCATGGAAATGATTT-CTTTGCCCTATTTTCCTTAAAATCAAAGTTAA
1 ATTGATGATTTTATTTTGCATGGAAATG-TTTCCTTTGCCCTATTTTCCTTAAAATCAAAGTTCA
* * *
284914 TCTCTTAAATAAGGCAAGCACTGATTCTCGTAATAGTCCCTATTCTTTTCAAGATTAGGAACCAA
65 TCTCTTAAATAAGGCAAGCACTGATTCTCGTAACAGTCCCCATTCTTTTCAAGATTGGGAACCAA
* * *
284979 AACCATCTTCCCTTCATTAGCATACATGACATTGATGCTTTGGGATCACAAGAAAAGCTATTCTT
130 AACCATATTCCCTTCATTAGGATACATGACATTGATGCTTTGGGATCGCAAGAAAAGCTATTCTT
* * * * * * *
285044 TTCACCGTTTTTGATAGAATCAAAGTTTGTGTCTTAAACAAGATAAACACGAATAGTCATACTAA
195 TCCACCATTTTTGATAGAATCAAAGTTTGTCTCCTAAATAAGACAAACATGAATAGTCATACTAA
*
285109 TCCCCATTCTTTTCAGGATTAGGTACCACAAACATAGTCTTCTCATAAGGATACACGATATTGAC
260 TCCCCATTCTTTTCAGGATTAGGCACCACAAACATAGTCTTCTCATAAGGATACACGATATTGAC
* * * * * * *
285174 ACTTTTGTTTCGCATGAAAGGCTTTCTCCCTACCAATTTTTGCAAAGTCTAAATCCGTACCTCAA
325 GCTTTGGTTTCGCAAGAAAGGCTTTCTCCCCACCAATTTTTGTAAAGTCTAAGTCCGTGCCTCAA
* *
285239 ATGTGTCAAACATGGATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACTACAAACACCT
390 ATGAGTCAAACATGGATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACTACAAACACAT
*
285304 TCTCCTCATTAGGATAGATGAT
455 TCTCCTCATTAGGATAAATGAT
* * * *
285326 ATTGATGATTTTATTTTGCATGGAAATGTTTCCTTTGCTCTATTTTCCTTGAAATTAAAGTTCAC
1 ATTGATGATTTTATTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCTTAAAATCAAAGTTCAT
* *
285391 CTCTTAAATAAGGCAAGCACTAATTCTCGTAATAGTCCCCATTCTTTTCAAGATTGGGAACCAAA
66 CTCTTAAATAAGGCAAGCACTGATTCTCGTAACAGTCCCCATTCTTTTCAAGATTGGGAACCAAA
* * *
285456 ACCATATTCCCTTCGTTAGGATACATGACATTGATGCTTTGTGATCGTAAGAAAAGCTATTCTTT
131 ACCATATTCCCTTCATTAGGATACATGACATTGATGCTTTGGGATCGCAAGAAAAGCTATTCTTT
* * *
285521 CCACCGA-TTTTGATAGAATCAAAGTTT-TCTCCTAAATAAAACAAACATGAACAGTCACACTAA
196 CCACC-ATTTTTGATAGAATCAAAGTTTGTCTCCTAAATAAGACAAACATGAATAGTCATACTAA
* * *
285584 TCCCAAGTCTTTTTAGGATTAGGCACCACAAACATAGTCTTCTCATAAGGATACACGATATTGAC
260 TCCCCATTCTTTTCAGGATTAGGCACCACAAACATAGTCTTCTCATAAGGATACACGATATTGAC
* * * *
285649 ACTTTGGTTTCGCAAGAAAGGCTTTCTCCCTACCAATTTTTGTAAAGTCTTAGTCCAG-GCCTCG
325 GCTTTGGTTTCGCAAGAAAGGCTTTCTCCCCACCAATTTTTGTAAAGTCTAAGTCC-GTGCCTCA
* *
285713 AATGAGTCAAACATGGATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACTAGAAAGACA
389 AATGAGTCAAACATGGATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACTACAAACACA
* **
285778 TTCTCCTCGTTACTATAAATGAT
454 TTCTCCTCATTAGGATAAATGAT
285801 ATTGATGATTTTATTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCTTAAAATCAAAGTTCAT
1 ATTGATGATTTTATTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCTTAAAATCAAAGTTCAT
*
285866 CTCTTAAATAAGGCAAGCACTGATTCTCGTAACAGTCCCCGTTCTTTTCAAGATTGGGAACC-AA
66 CTCTTAAATAAGGCAAGCACTGATTCTCGTAACAGTCCCCATTCTTTTCAAGATTGGGAACCAAA
*
285930 ACCATATTCTCTTCATTAGGATACATGACATTGATGCTTTGGGATCGCAAGAAAAGCTATTCTTT
131 ACCATATTCCCTTCATTAGGATACATGACATTGATGCTTTGGGATCGCAAGAAAAGCTATTCTTT
* *
285995 CCACCATTTTTGATAGAATCAAAGTTTGTCTCCTAAACATGACAAACATGAATAGTCATACTAAT
196 CCACCATTTTTGATAGAATCAAAGTTTGTCTCCTAAATAAGACAAACATGAATAGTCATACTAAT
286060 CCCCATTCTTTTCAGGATTAGGCACCACAAACATAGTCTTCTCATAAGGATACACGATATTGACG
261 CCCCATTCTTTTCAGGATTAGGCACCACAAACATAGTCTTCTCATAAGGATACACGATATTGACG
** * * * * * *
286125 CTTTTCTTTCGTAAGAAAGGCTTTCTCCCTACCAATTTTTGTAAAGTCTAAATCTGTGACTGAAA
326 CTTTGGTTTCGCAAGAAAGGCTTTCTCCCCACCAATTTTTGTAAAGTCTAAGTCCGTGCCTCAAA
** * *
286190 TCTGTCAAACATGGATTCTAGTAATAATCTT-ATTCATTTTGTGATTAGGTACTACAAACACCTT
391 TGAGTCAAACATGGATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACTACAAACACATT
* * *
286254 TTCCTTATTAGGATAGATGAT
456 CTCCTCATTAGGATAAATGAT
* *
286275 ATTGATGATTTTATTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCTTGACATCAAAGTTCAT
1 ATTGATGATTTTATTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCTTAAAATCAAAGTTCAT
* * * *
286340 CTCTTAAATAAGGCAAGGACTAATTCTCGTAACAGT-CCCGTTCTTTTCAAGATTAGGAACCAAA
66 CTCTTAAATAAGGCAAGCACTGATTCTCGTAACAGTCCCCATTCTTTTCAAGATTGGGAACCAAA
* * * * * *
286404 ACCATATTCTCTTCGTTAGGATGCACGAAATTGATGCTTTAGGATCGCAAGAAAAGCTATTCTTT
131 ACCATATTCCCTTCATTAGGATACATGACATTGATGCTTTGGGATCGCAAGAAAAGCTATTCTTT
* *
286469 CCATCGA-TTTTGATAGAATCAAAGTTTGTCTCCTAAATAAGACAAACATGAAGAGTCATACTAA
196 CCA-CCATTTTTGATAGAATCAAAGTTTGTCTCCTAAATAAGACAAACATGAATAGTCATACTAA
* * * *
286533 TCCTCATTCTTTTCAAGATTAGGCAGCACAAACATAGTCTTCTCATAAGGATACAAGATATTGAC
260 TCCCCATTCTTTTCAGGATTAGGCACCACAAACATAGTCTTCTCATAAGGATACACGATATTGAC
* * * * **
286598 ACTTTGGTTTTGCAAGAAAGGCTTTCTCCCCACCAATTTTTATAAAGTCTAAGTCCATGCCTTGA
325 GCTTTGGTTTCGCAAGAAAGGCTTTCTCCCCACCAATTTTTGTAAAGTCTAAGTCCGTGCCTCAA
* * * **
286663 ATGAGTCAAACATAGATTCTAGTAATAATCTTCATTCATTTTATGATTAGGCATTATGAACACAT
390 ATGAGTCAAACATGGATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACTACAAACACAT
* *
286728 TCTTCTCATT-GCTATAAATGAT
455 TCTCCTCATTAG-GATAAATGAT
* * * * *
286750 ATTGATGATTTTATTTTGTATGGAAATATTTCCTTTGCCCTAGTTTCCTTAAAATTAAAGTTAAT
1 ATTGATGATTTTATTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCTTAAAATCAAAGTTCAT
* * *
286815 CTCTTAAATAAGGCAAACATTGATTCTCGTAACAGT-CCCGTTCTTTTCAAGATTGGGAACCAAA
66 CTCTTAAATAAGGCAAGCACTGATTCTCGTAACAGTCCCCATTCTTTTCAAGATTGGGAACCAAA
* *
286879 ACCATATTCCCTTCATTAGGATACATGACATTGATGCATTGGGACCGCAAGAAAAGCTATTCTTT
131 ACCATATTCCCTTCATTAGGATACATGACATTGATGCTTTGGGATCGCAAGAAAAGCTATTCTTT
* * * *
286944 CCACCATTTTTTATGGAATCAAAGTTTATCTCCTAAACAAGACAAACATGAATAGTCATACTAAT
196 CCACCATTTTTGATAGAATCAAAGTTTGTCTCCTAAATAAGACAAACATGAATAGTCATACTAAT
*
287009 CCCCATTCTTTTCAGGATTAAGCACCACAAACATAGTCTTCTCATAAGGATACACGATATTGACG
261 CCCCATTCTTTTCAGGATTAGGCACCACAAACATAGTCTTCTCATAAGGATACACGATATTGACG
* ** * * * ** *
287074 CTTTTGAGTCGCAAGAAAGGCTTTCTCCCTACTAATTTTTGTAAAGTCTAAATCTATGCCTGAAA
326 CTTTGGTTTCGCAAGAAAGGCTTTCTCCCCACCAATTTTTGTAAAGTCTAAGTCCGTGCCTCAAA
* * *
287139 TGTGTCAAACATAGATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACTACAAACACCTT
391 TGAGTCAAACATGGATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACTACAAACACATT
* *
287204 CTCCACATTAGGATAGATGAT
456 CTCCTCATTAGGATAAATGAT
* * * *
287225 ATTGATGATTTAATTTTGCATGGAAATGTTTCCTTTACCCTATTTTCCTTGAAATCAATGTTCAT
1 ATTGATGATTTTATTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCTTAAAATCAAAGTTCAT
* * * * * **
287290 CTTTTAAATAGGGCAAGCACTAATTCTTGTAATAGTCCCTGTTCTTTTCAAGATTGGGAACCAAA
66 CTCTTAAATAAGGCAAGCACTGATTCTCGTAACAGTCCCCATTCTTTTCAAGATTGGGAACCAAA
* * *
287355 ACCATATTCCCTTCATCAGGATACATGACATTGATACTTTGAGATCGCAAGAAAAGCTATTCTTT
131 ACCATATTCCCTTCATTAGGATACATGACATTGATGCTTTGGGATCGCAAGAAAAGCTATTCTTT
* *
287420 CCACCAATTTTGATAGAATCAAAGTTTATCTCCTAAATAAGACAAACATGAATAGTCATACTAAT
196 CCACCATTTTTGATAGAATCAAAGTTTGTCTCCTAAATAAGACAAACATGAATAGTCATACTAAT
* * * * *
287485 CTCCATTTTTTTCAGGATTATGCACCACAAACATCGTCTTCTCATAAGGATACACAATATTGACG
261 CCCCATTCTTTTCAGGATTAGGCACCACAAACATAGTCTTCTCATAAGGATACACGATATTGACG
* * * *
287550 CTTTGGTTTTGCAAGCAAGGCTTTGTCCCCACTAATTTTTGTAAAGTCTAAGTCCGTGCCTCAAA
326 CTTTGGTTTCGCAAGAAAGGCTTTCTCCCCACCAATTTTTGTAAAGTCTAAGTCCGTGCCTCAAA
* * * *
287615 TGTGTCAAACATGGATTCTAATAATAATCTTCATTCATTTTGTGATTAAGCACTACAAACACCTT
391 TGAGTCAAACATGGATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACTACAAACACATT
287680 CTCCTCATTAGGATAAATGAT
456 CTCCTCATTAGGATAAATGAT
*
287701 ATTGATGATTTTATTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCATAAAATCAAAGTTCAT
1 ATTGATGATTTTATTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCTTAAAATCAAAGTTCAT
* * * * * *
287766 CTCTTAAATAAGGCAAGCATTAATTCTCGTAACAGTCCCAATTCTTCTCAAAATTGGGAACTAAA
66 CTCTTAAATAAGGCAAGCACTGATTCTCGTAACAGTCCCCATTCTTTTCAAGATTGGGAACCAAA
* * * * * *
287831 AACATTTTCCCTTTATTAAGATACGTGACATTGATGCTTTGGGAAT-GCAAGAAAAGCTATTCGT
131 ACCATATTCCCTTCATTAGGATACATGACATTGATGCTTTGGG-ATCGCAAGAAAAGCTATTCTT
* * *
287895 TCCACCATTTTTGATAGAATCAAAGTTTGTATCCTTAGTAAGACAAACATGAATAGTCATACTAA
195 TCCACCATTTTTGATAGAATCAAAGTTTGTCTCCTAAATAAGACAAACATGAATAGTCATACTAA
* * * * *
287960 TCCCCATTCTTTTCAAGG-TTAGGCACCATAAACATAGACTTCACATAAGGATACATGATATTGG
260 TCCCCATTCTTTTC-AGGATTAGGCACCACAAACATAGTCTTCTCATAAGGATACACGATATTGA
* * * * * * *
288024 CGCTTTGGTTTAGCAAGAAAAGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTCATGCCTCA
324 CGCTTTGGTTTCGCAAGAAAGGCTTTCTCCCCACCAATTTTTGTAAAGTCTAAGTCCGTGCCTCA
* * * * *
288089 AATTAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACCATAAACACA
389 AATGAGTCAAACATGGATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACTACAAACACA
*
288154 TTCTCCTCATTAGGGTAAATGAT
454 TTCTCCTCATTAGGATAAATGAT
*
288177 ATTGATGATTTTCTTTTGCAT-GAAATTGTTTCCTTTGCCCTATTTTCCTTAAAATCAAAGTTCA
1 ATTGATGATTTTATTTTGCATGGAAA-TGTTTCCTTTGCCCTATTTTCCTTAAAATCAAAGTTCA
* * * * ** *
288241 TC-CGTTAAAAAAGGTAAGCATTGA-TCTTCGTAACAATCTTCATTCTTTTCAAAATTGGGAACC
65 TCTC-TTAAATAAGGCAAGCACTGATTC-TCGTAACAGTCCCCATTCTTTTCAAGATTGGGAACC
* * * * * *
288304 AAAAACACAATCCATTCATTAGGATACATGACATTGATGCTTTGGTG-TTGCAAGAAAAGCTTTT
128 AAAACCATATTCCCTTCATTAGGATACATGACATTGATGCTTTGG-GATCGCAAGAAAAGCTATT
* * * * * *
288368 CTTTCAACCATTTTTGTTAGAATCAAAATTTGTCTCTTCAATAAGACAAACATGAACAGTCATAC
192 CTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCCTAAATAAGACAAACATGAATAGTCATAC
* * *
288433 TAATCCCCATTCATTTCAGGAATAGGCACCATAAACATAGTCTTCGT-ATAAGGATACACGATAT
257 TAATCCCCATTCTTTTCAGGATTAGGCACCACAAACATAGTCTTC-TCATAAGGATACACGATAT
* * * * * **
288497 TGAAGCTTTGGTTTCCCAAGAAAGGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTTGTGCC
321 TGACGCTTTGGTTTCGCAAGAAAGGCTTTCTCCCCACCAATTTTTGTAAAGTCTAAGTCCGTGCC
* * *
288562 TCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAAC
386 TCAAATGAGTCAAACATGGATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACTACAAAC
*
288627 ACATTCTCCTCATTAGGGTAAATGAT
451 ACATTCTCCTCATTAGGATAAATGAT
** * * *
288653 ATTGATGATTTCCTTTTGCATGGAAATGTTTCCTTTGCCCTTTTTTCCTTAAATTCAAAGTGCAT
1 ATTGATGATTTTATTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCTTAAAATCAAAGTTCAT
* * * * * *
288718 CTCTTCAATAAGGCAAGCATTGATTGTCGTAACAATCTCCATTCTTTTCATGATTGGGAACCAAA
66 CTCTTAAATAAGGCAAGCACTGATTCTCGTAACAGTCCCCATTCTTTTCAAGATTGGGAACCAAA
** * * * * * * * *
288783 ATGACAATCCCTTTAGTAGGATACATGACACTCATGCTTTGGTG-TCACAAGAAAAGCTTTTCTT
131 ACCATATTCCCTTCATTAGGATACATGACATTGATGCTTTGG-GATCGCAAGAAAAGCTATTCTT
* * * ** *
288847 TCGA-C-TGTTTTGTTAGAATTAAAGTTTGTCTATTCAATAAGACAAACATGAATAGTCATACTA
195 TCCACCAT-TTTTGATAGAATCAAAGTTTGTCTCCTAAATAAGACAAACATGAATAGTCATACTA
* ** * *
288910 ATCCCCATTCATTTCAATATTAGACACCATAAACATAGTCTTC-CTATAAGGA-ACCAC-AGTAT
259 ATCCCCATTCTTTTCAGGATTAGGCACCACAAACATAGTCTTCTC-ATAAGGATA-CACGA-TAT
* ** * * * * * *
288972 TGAAGCTTTGGTTTCGCAAGAAACACTTTTTTCCCACCAATTTTTATAATGTTTAAGTTCGTGCC
321 TGACGCTTTGGTTTCGCAAGAAAGGCTTTCTCCCCACCAATTTTTGTAAAGTCTAAGTCCGTGCC
* ** * *
289037 CCAAATGAGAGAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAAC
386 TCAAATGAGTCAAACATGGATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACTACAAAC
289102 ACATTCTCCTCATTA
451 ACATTCTCCTCATTA
289117 AGGTAAAAAA
Statistics
Matches: 5952, Mismatches: 646, Indels: 92
0.89 0.10 0.01
Matches are distributed among these distances:
473 25 0.00
474 616 0.10
475 2659 0.45
476 2636 0.44
477 16 0.00
ACGTcount: A:0.31, C:0.20, G:0.14, T:0.35
Consensus pattern (476 bp):
ATTGATGATTTTATTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCTTAAAATCAAAGTTCAT
CTCTTAAATAAGGCAAGCACTGATTCTCGTAACAGTCCCCATTCTTTTCAAGATTGGGAACCAAA
ACCATATTCCCTTCATTAGGATACATGACATTGATGCTTTGGGATCGCAAGAAAAGCTATTCTTT
CCACCATTTTTGATAGAATCAAAGTTTGTCTCCTAAATAAGACAAACATGAATAGTCATACTAAT
CCCCATTCTTTTCAGGATTAGGCACCACAAACATAGTCTTCTCATAAGGATACACGATATTGACG
CTTTGGTTTCGCAAGAAAGGCTTTCTCCCCACCAATTTTTGTAAAGTCTAAGTCCGTGCCTCAAA
TGAGTCAAACATGGATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACTACAAACACATT
CTCCTCATTAGGATAAATGAT
Found at i:285106 original size:951 final size:951
Alignment explanation
Indices: 281998--289116 Score: 9663
Period size: 951 Copynumber: 7.5 Consensus size: 951
281988 TGGTGTCTAC
* ** * * * * *
281998 ATTGATGATTTTCTTTTGTGTGGAAATCTTTTCTTTGCCCAATTTTCCTTAAAATCAAAATTCAC
1 ATTGATGATTTTATTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCTTAAAATCAAAGTTCAT
* * * * **
282063 CCCTTAAATATGACAAGCACTGATTCTCATAACAGTCCCCATTCTTTTCAAGATTGGGAATTAAA
66 CTCTTAAATAAGGCAAGCACTGATTCTCGTAACAGTCCCCATTCTTTTCAAGATTGGGAACCAAA
* *
282128 AACATATTCCCTTCCTTAGGATACATGACATTGATGCTTTGGGATCGCAAGAAAAGCTATTCTTT
131 ACCATATTCCCTTCATTAGGATACATGACATTGATGCTTTGGGATCGCAAGAAAAGCTATTCTTT
* *
282193 CCACCGTTTTTCATAGAATTAAAGTTTGTCTCCTAAATAAGACAAACATGAATAGTCATACTAAT
196 CCACCGTTTTTGATAGAATCAAAGTTTGTCTCCTAAATAAGACAAACATGAATAGTCATACTAAT
* * * *
282258 TCCCATTCTTTTCAGGATTAGGCACCACAAACGTAGTCTTCTCATAAGGATACATGATATTGATG
261 CCCCATTCTTTTCAGGATTAGGCACCACAAACATAGTCTTCTCATAAGGATACACGATATTGACG
* **
282323 CTTTGGTTTCGCAAGAAAGGCTTTCT-CCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTGTAA
326 CTTTGGTTTCGCAAGAAAGGCTTTCTCCCCACCAATTTTTGTAAAGTCTAAGTCCGTGCCTCAAA
* * * * *
282387 TGAGACAAACATGGATTCAAGTAACAA-CGTTCATTCATTTTCTGATTAGGCATTACAAACACAT
391 TGAGTCAAACATGGATTCTAGTAATAATC-TTCATTCATTTTGTGATTAGGCACTACAAACACAT
* * * *
282451 TCTTCTCATTAGGATAAATGATATTGATAATTTTATTTTGCATGGAAATGTCTCATTTGCCCTAT
455 TCTCCTCATTAGGATAAATGATATTGATGATTTTATTTTGCATGGAAATGTTTCCTTTGCCCTAT
* ** *
282516 TTTCCTTAAAATCAAAGTTTATCTCTTAAATAAGGCAAGCACTGATTCTCATAACACTCCCCGTT
520 TTTCCTTAAAATCAAAGTTCATCTCTTAAATAAGGCAAGCACTGATTCTTGTAACAGTCCCCGTT
* *
282581 TTTTTCAAGATTAGGAACCAAAACCATATTCCCTTCATTAGGATACATGACATTGATGCTTTGGG
585 CTTTTCAAGATTGGGAACCAAAACCATATTCCCTTCATTAGGATACATGACATTGATGCTTT-GG
* ** *
282646 AACGCAAGAAAAGCTATTCTTTCCACTATTTTTCATAGAATCAAAGTTTGTCTCCTAAATAAGAC
649 ATCGCAAGAAAAGCTATTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCCTAAATAAGAC
* * * * *
282711 AAACATGAATAGTCATACTAATCCACATTCTTTTTAAGATAAGGCACGACAAACATAGTCTTCTC
714 AAACATGAATAGTCATACTAATCCCCATTCCTTTTAGGATTAGGCACCACAAACATAGTCTTCTC
* *
282776 CTAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTCCCCACCAATTTTTGTA
779 ATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTCCCCACCAATTTTTGTA
* * ** *
282841 AAGTCTAAATCTATGCCTCAAAT-ATGTCAAAGTTGGATTCTAGTAATAATCTTCATTCACTTTG
844 AAGTCTAAGTCCATGCCTCAAATGA-GTCAAACATGGATTCTAGTAATAATCTTCATTCATTTTG
* *
282905 TGATTAGGCACTACAAACACCTTCTCCTCATTAGGATAGATGAT
908 TGATTAGGCACTACAAACACATTCTCCTCATTAGGATAAATGAT
* * *
282949 ATTGATGATTTTATTTTGCATGAAAATGTTTCCTTTACCCTATTTTCCTTGAAATCAAAGTTCAT
1 ATTGATGATTTTATTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCTTAAAATCAAAGTTCAT
* ** *
283014 CTCTTAAATAAGGCAAGCACTAATTCTCAAAACAGTCCCCGTTCTTTTCAAGATTGGGAACCAAA
66 CTCTTAAATAAGGCAAGCACTGATTCTCGTAACAGTCCCCATTCTTTTCAAGATTGGGAACCAAA
* *
283079 ACCATATTCCCTTCATTAGGATACATGACATTAATGCTTTGGGATCACAAGAAAAGCTATTCTTT
131 ACCATATTCCCTTCATTAGGATACATGACATTGATGCTTTGGGATCGCAAGAAAAGCTATTCTTT
* *
283144 CCACCGTTTTTCATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAAT
196 CCACCGTTTTTGATAGAATCAAAGTTTGTCTCCTAAATAAGACAAACATGAATAGTCATACTAAT
* *
283209 CTCCATTCTTTTCAGGATTAGGCACCACAAACATAGTCTTCTCATAAGGATACA-GATATTGATG
261 CCCCATTCTTTTCAGGATTAGGCACCACAAACATAGTCTTCTCATAAGGATACACGATATTGACG
* * * * *
283273 CTTTGG-TTCTGCATGGAAGCCTTTCTCCTCACCAATTTTTGTAAAGTCTAAGTCCGTGCCTTAA
326 CTTTGGTTTC-GCAAGAAAGGCTTTCTCCCCACCAATTTTTGTAAAGTCTAAGTCCGTGCCTCAA
*
283337 ATGAGTCAAACATGGATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACTACAAACACCT
390 ATGAGTCAAACATGGATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACTACAAACACAT
* ** *
283402 TCTACTCATTAGGATAAATGATATTGATGATTTTATTTTGTGTGAAAATGTTTCCTTTGCCCTAT
455 TCTCCTCATTAGGATAAATGATATTGATGATTTTATTTTGCATGGAAATGTTTCCTTTGCCCTAT
* * * * *
283467 TTTCCTTAAAATCCAAGTTCATCCCTTAAA-ACAAGCAAGCATTGATTCTTGTAACAGTCCCCAT
520 TTTCCTTAAAATCAAAGTTCATCTCTTAAATA-AGGCAAGCACTGATTCTTGTAACAGTCCCCGT
* *
283531 TCTTCTCAAGATTGGGAACCAAATA-CATATTCCCTTCATTAGGATACATGACATTGACGCTTTG
584 TCTTTTCAAGATTGGGAACCAAA-ACCATATTCCCTTCATTAGGATACATGACATTGATGCTTT-
* * * * *
283595 GGATCACAAGAAAAGCTATT-TTTCCATCGTTTTGGATAGAATCAAAGTTTGTGTCTTAAATAAG
647 GGATCGCAAGAAAAGCTATTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCCTAAATAAG
* * *
283659 ATAAACATAAATAGTCATACTAATCCCCATT-CTTTTCAGGATTAGGCACCACAAACATAGCCTT
712 ACAAACATGAATAGTCATACTAATCCCCATTCCTTTT-AGGATTAGGCACCACAAACATAGTCTT
* * **
283723 CTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTCTCCCTTCCAATTTTT
776 CTCATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTCCCCACCAATTTTT
* * * * * * *
283788 GTAAATTTTAAGTCCGTACCTCAAATGAGTCAAACATGGATCCTAGTAATGATCTTCAGTCATTT
841 GTAAAGTCTAAGTCCATGCCTCAAATGAGTCAAACATGGATTCTAGTAATAATCTTCATTCATTT
* * * *
283853 TGTGATTAGGCACTATAAACACATTCTACTCCTTTGGATAAATGAT
906 TGTGATTAGGCACTACAAACACATTCTCCTCATTAGGATAAATGAT
* * * * * * * *
283899 ATTGACGATTTTTTTTTGCATGGAAATCTTTTCTTTACCCAATTTTCCTTAAAATCAAAATTCAC
1 ATTGATGATTTTATTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCTTAAAATCAAAGTTCAT
* * * * * * *
283964 CCCTTAAATATGACAAGCACTGATCCTCATAACAGTCCCCATTATTCTCAAGATTGGGAACCAAA
66 CTCTTAAATAAGGCAAGCACTGATTCTCGTAACAGTCCCCATTCTTTTCAAGATTGGGAACCAAA
* * * * * ** *
284029 ACCAGAATCCCTTCATTAGGATACATGACATTGATGCTTTAGGATCGGATGAAAAGCGCTTTTTT
131 ACCATATTCCCTTCATTAGGATACATGACATTGATGCTTTGGGATCGCAAGAAAAGCTATTCTTT
** * *
284094 CCGTCGTTTTTCATAGAATCAAAGTTTGTCTCCTAAATAAGACAAACATGAATACTCATACTAAT
196 CCACCGTTTTTGATAGAATCAAAGTTTGTCTCCTAAATAAGACAAACATGAATAGTCATACTAAT
* *
284159 CCCCATTCTTTTCAGGATTAGGCACTACAAACATAGT-TTCTCATAAGGATACACGATATTGATG
261 CCCCATTCTTTTCAGGATTAGGCACCACAAACATAGTCTTCTCATAAGGATACACGATATTGACG
* ** * *
284223 CTTTGGTTTCTCAAGAAAGGCTTTCTCCCCACCAATTTTTGTAAAGTCTTGGTCCATGCCTCGAA
326 CTTTGGTTTCGCAAGAAAGGCTTTCTCCCCACCAATTTTTGTAAAGTCTAAGTCCGTGCCTCAAA
*
284288 TGAGTCAAACATGGATTCTAGTAATAATCTTCATTCATTTTGTGATTAAGCACTACAAACACATT
391 TGAGTCAAACATGGATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACTACAAACACATT
* ** * *
284353 TTCCTCATTACTATAAATGATATTGATGATTTTATTTTGCATGGAAATGTTTTCTTTACCCTATT
456 CTCCTCATTAGGATAAATGATATTGATGATTTTATTTTGCATGGAAATGTTTCCTTTGCCCTATT
* * * * *
284418 TTACTTAAAATCAAAGTTCATCTCCTAAATAAGGCAAGTACTGATTCTTGTAATAGTCCTCGTTC
521 TTCCTTAAAATCAAAGTTCATCTCTTAAATAAGGCAAGCACTGATTCTTGTAACAGTCCCCGTTC
** *
284483 TTTTCAAGATTGGGAACCAAAACCATCGTCCCTTCATTAGCATACATGACATTGATGCTTTAGGA
586 TTTTCAAGATTGGGAACCAAAACCATATTCCCTTCATTAGGATACATGACATTGATGCTTT-GGA
* * * * * *
284548 TCACAAGAAAAGCTATTGTTTTCACCGTTTTTGATAGAATCAAAGTTTGTGTCTTAAACAAGACA
650 TCGCAAGAAAAGCTATTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCCTAAATAAGACA
*
284613 AACACGAATAGTCATACTAATCCCCATTCCTTTTAGGATTAGGCACCACAAACATAGTCTTCTCA
715 AACATGAATAGTCATACTAATCCCCATTCCTTTTAGGATTAGGCACCACAAACATAGTCTTCTCA
* * * *
284678 TAAGGATACACGATATTGACGCTTTTGTTTTGCATGAAAGGCTTTCTCCCTACCAATTTTTGTAA
780 TAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTCCCCACCAATTTTTGTAA
* * * * *
284743 AGTCTAAATCCATGCCTTAAATGTGTGAAACATGCATTCTAGTAATAATCTTCATTCATTTTGTG
845 AGTCTAAGTCCATGCCTCAAATGAGTCAAACATGGATTCTAGTAATAATCTTCATTCATTTTGTG
* * *
284808 ATTAGGCACTACAAACACCTTCTGCTCATTAGGATAGATGAT
910 ATTAGGCACTACAAACACATTCTCCTCATTAGGATAAATGAT
*
284850 ATTGATGATTTTATTTTGCATGGAAATGATTT-CTTTGCCCTATTTTCCTTAAAATCAAAGTTAA
1 ATTGATGATTTTATTTTGCATGGAAATG-TTTCCTTTGCCCTATTTTCCTTAAAATCAAAGTTCA
* * *
284914 TCTCTTAAATAAGGCAAGCACTGATTCTCGTAATAGTCCCTATTCTTTTCAAGATTAGGAACCAA
65 TCTCTTAAATAAGGCAAGCACTGATTCTCGTAACAGTCCCCATTCTTTTCAAGATTGGGAACCAA
* * *
284979 AACCATCTTCCCTTCATTAGCATACATGACATTGATGCTTTGGGATCACAAGAAAAGCTATTCTT
130 AACCATATTCCCTTCATTAGGATACATGACATTGATGCTTTGGGATCGCAAGAAAAGCTATTCTT
* * * * * *
285044 TTCACCGTTTTTGATAGAATCAAAGTTTGTGTCTTAAACAAGATAAACACGAATAGTCATACTAA
195 TCCACCGTTTTTGATAGAATCAAAGTTTGTCTCCTAAATAAGACAAACATGAATAGTCATACTAA
*
285109 TCCCCATTCTTTTCAGGATTAGGTACCACAAACATAGTCTTCTCATAAGGATACACGATATTGAC
260 TCCCCATTCTTTTCAGGATTAGGCACCACAAACATAGTCTTCTCATAAGGATACACGATATTGAC
* * * * * * *
285174 ACTTTTGTTTCGCATGAAAGGCTTTCTCCCTACCAATTTTTGCAAAGTCTAAATCCGTACCTCAA
325 GCTTTGGTTTCGCAAGAAAGGCTTTCTCCCCACCAATTTTTGTAAAGTCTAAGTCCGTGCCTCAA
* *
285239 ATGTGTCAAACATGGATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACTACAAACACCT
390 ATGAGTCAAACATGGATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACTACAAACACAT
* *
285304 TCTCCTCATTAGGATAGATGATATTGATGATTTTATTTTGCATGGAAATGTTTCCTTTGCTCTAT
455 TCTCCTCATTAGGATAAATGATATTGATGATTTTATTTTGCATGGAAATGTTTCCTTTGCCCTAT
* * * * * * *
285369 TTTCCTTGAAATTAAAGTTCACCTCTTAAATAAGGCAAGCACTAATTCTCGTAATAGTCCCCATT
520 TTTCCTTAAAATCAAAGTTCATCTCTTAAATAAGGCAAGCACTGATTCTTGTAACAGTCCCCGTT
*
285434 CTTTTCAAGATTGGGAACCAAAACCATATTCCCTTCGTTAGGATACATGACATTGATGCTTTGTG
585 CTTTTCAAGATTGGGAACCAAAACCATATTCCCTTCATTAGGATACATGACATTGATGCTTTG-G
* * *
285499 ATCGTAAGAAAAGCTATTCTTTCCACCGATTTTGATAGAATCAAAGTTT-TCTCCTAAATAAAAC
649 ATCGCAAGAAAAGCTATTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCCTAAATAAGAC
* * * * *
285563 AAACATGAACAGTCACACTAATCCCAAGTCTTTTTAGGATTAGGCACCACAAACATAGTCTTCTC
714 AAACATGAATAGTCATACTAATCCCCATTCCTTTTAGGATTAGGCACCACAAACATAGTCTTCTC
* *
285628 ATAAGGATACACGATATTGACACTTTGGTTTCGCAAGAAAGGCTTTCTCCCTACCAATTTTTGTA
779 ATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTCCCCACCAATTTTTGTA
* * *
285693 AAGTCTTAGTCCAGGCCTCGAATGAGTCAAACATGGATTCTAGTAATAATCTTCATTCATTTTGT
844 AAGTCTAAGTCCATGCCTCAAATGAGTCAAACATGGATTCTAGTAATAATCTTCATTCATTTTGT
* * * **
285758 GATTAGGCACTAGAAAGACATTCTCCTCGTTACTATAAATGAT
909 GATTAGGCACTACAAACACATTCTCCTCATTAGGATAAATGAT
285801 ATTGATGATTTTATTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCTTAAAATCAAAGTTCAT
1 ATTGATGATTTTATTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCTTAAAATCAAAGTTCAT
*
285866 CTCTTAAATAAGGCAAGCACTGATTCTCGTAACAGTCCCCGTTCTTTTCAAGATTGGGAACC-AA
66 CTCTTAAATAAGGCAAGCACTGATTCTCGTAACAGTCCCCATTCTTTTCAAGATTGGGAACCAAA
*
285930 ACCATATTCTCTTCATTAGGATACATGACATTGATGCTTTGGGATCGCAAGAAAAGCTATTCTTT
131 ACCATATTCCCTTCATTAGGATACATGACATTGATGCTTTGGGATCGCAAGAAAAGCTATTCTTT
* * *
285995 CCACCATTTTTGATAGAATCAAAGTTTGTCTCCTAAACATGACAAACATGAATAGTCATACTAAT
196 CCACCGTTTTTGATAGAATCAAAGTTTGTCTCCTAAATAAGACAAACATGAATAGTCATACTAAT
286060 CCCCATTCTTTTCAGGATTAGGCACCACAAACATAGTCTTCTCATAAGGATACACGATATTGACG
261 CCCCATTCTTTTCAGGATTAGGCACCACAAACATAGTCTTCTCATAAGGATACACGATATTGACG
** * * * * * *
286125 CTTTTCTTTCGTAAGAAAGGCTTTCTCCCTACCAATTTTTGTAAAGTCTAAATCTGTGACTGAAA
326 CTTTGGTTTCGCAAGAAAGGCTTTCTCCCCACCAATTTTTGTAAAGTCTAAGTCCGTGCCTCAAA
** * *
286190 TCTGTCAAACATGGATTCTAGTAATAATCTT-ATTCATTTTGTGATTAGGTACTACAAACACCTT
391 TGAGTCAAACATGGATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACTACAAACACATT
* * *
286254 TTCCTTATTAGGATAGATGATATTGATGATTTTATTTTGCATGGAAATGTTTCCTTTGCCCTATT
456 CTCCTCATTAGGATAAATGATATTGATGATTTTATTTTGCATGGAAATGTTTCCTTTGCCCTATT
* * * * *
286319 TTCCTTGACATCAAAGTTCATCTCTTAAATAAGGCAAGGACTAATTCTCGTAACAGT-CCCGTTC
521 TTCCTTAAAATCAAAGTTCATCTCTTAAATAAGGCAAGCACTGATTCTTGTAACAGTCCCCGTTC
* * * * * *
286383 TTTTCAAGATTAGGAACCAAAACCATATTCTCTTCGTTAGGATGCACGAAATTGATGCTTTAGGA
586 TTTTCAAGATTGGGAACCAAAACCATATTCCCTTCATTAGGATACATGACATTGATGCTTT-GGA
* *
286448 TCGCAAGAAAAGCTATTCTTTCCATCGATTTTGATAGAATCAAAGTTTGTCTCCTAAATAAGACA
650 TCGCAAGAAAAGCTATTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCCTAAATAAGACA
* * * *
286513 AACATGAAGAGTCATACTAATCCTCATT-CTTTTCAAGATTAGGCAGCACAAACATAGTCTTCTC
715 AACATGAATAGTCATACTAATCCCCATTCCTTTT-AGGATTAGGCACCACAAACATAGTCTTCTC
* * * *
286577 ATAAGGATACAAGATATTGACACTTTGGTTTTGCAAGAAAGGCTTTCTCCCCACCAATTTTTATA
779 ATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTCCCCACCAATTTTTGTA
** * *
286642 AAGTCTAAGTCCATGCCTTGAATGAGTCAAACATAGATTCTAGTAATAATCTTCATTCATTTTAT
844 AAGTCTAAGTCCATGCCTCAAATGAGTCAAACATGGATTCTAGTAATAATCTTCATTCATTTTGT
* ** * *
286707 GATTAGGCATTATGAACACATTCTTCTCATT-GCTATAAATGAT
909 GATTAGGCACTACAAACACATTCTCCTCATTAG-GATAAATGAT
* * * * *
286750 ATTGATGATTTTATTTTGTATGGAAATATTTCCTTTGCCCTAGTTTCCTTAAAATTAAAGTTAAT
1 ATTGATGATTTTATTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCTTAAAATCAAAGTTCAT
* * *
286815 CTCTTAAATAAGGCAAACATTGATTCTCGTAACAGT-CCCGTTCTTTTCAAGATTGGGAACCAAA
66 CTCTTAAATAAGGCAAGCACTGATTCTCGTAACAGTCCCCATTCTTTTCAAGATTGGGAACCAAA
* *
286879 ACCATATTCCCTTCATTAGGATACATGACATTGATGCATTGGGACCGCAAGAAAAGCTATTCTTT
131 ACCATATTCCCTTCATTAGGATACATGACATTGATGCTTTGGGATCGCAAGAAAAGCTATTCTTT
* * * * *
286944 CCACCATTTTTTATGGAATCAAAGTTTATCTCCTAAACAAGACAAACATGAATAGTCATACTAAT
196 CCACCGTTTTTGATAGAATCAAAGTTTGTCTCCTAAATAAGACAAACATGAATAGTCATACTAAT
*
287009 CCCCATTCTTTTCAGGATTAAGCACCACAAACATAGTCTTCTCATAAGGATACACGATATTGACG
261 CCCCATTCTTTTCAGGATTAGGCACCACAAACATAGTCTTCTCATAAGGATACACGATATTGACG
* ** * * * ** *
287074 CTTTTGAGTCGCAAGAAAGGCTTTCTCCCTACTAATTTTTGTAAAGTCTAAATCTATGCCTGAAA
326 CTTTGGTTTCGCAAGAAAGGCTTTCTCCCCACCAATTTTTGTAAAGTCTAAGTCCGTGCCTCAAA
* * *
287139 TGTGTCAAACATAGATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACTACAAACACCTT
391 TGAGTCAAACATGGATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACTACAAACACATT
* * * *
287204 CTCCACATTAGGATAGATGATATTGATGATTTAATTTTGCATGGAAATGTTTCCTTTACCCTATT
456 CTCCTCATTAGGATAAATGATATTGATGATTTTATTTTGCATGGAAATGTTTCCTTTGCCCTATT
* * * * * * *
287269 TTCCTTGAAATCAATGTTCATCTTTTAAATAGGGCAAGCACTAATTCTTGTAATAGTCCCTGTTC
521 TTCCTTAAAATCAAAGTTCATCTCTTAAATAAGGCAAGCACTGATTCTTGTAACAGTCCCCGTTC
* *
287334 TTTTCAAGATTGGGAACCAAAACCATATTCCCTTCATCAGGATACATGACATTGATACTTTGAGA
586 TTTTCAAGATTGGGAACCAAAACCATATTCCCTTCATTAGGATACATGACATTGATGCTTTG-GA
** *
287399 TCGCAAGAAAAGCTATTCTTTCCACCAATTTTGATAGAATCAAAGTTTATCTCCTAAATAAGACA
650 TCGCAAGAAAAGCTATTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCCTAAATAAGACA
* * * *
287464 AACATGAATAGTCATACTAATCTCCATT-TTTTTCAGGATTATGCACCACAAACATCGTCTTCTC
715 AACATGAATAGTCATACTAATCCCCATTCCTTTT-AGGATTAGGCACCACAAACATAGTCTTCTC
* * * * *
287528 ATAAGGATACACAATATTGACGCTTTGGTTTTGCAAGCAAGGCTTTGTCCCCACTAATTTTTGTA
779 ATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTCCCCACCAATTTTTGTA
* * *
287593 AAGTCTAAGTCCGTGCCTCAAATGTGTCAAACATGGATTCTAATAATAATCTTCATTCATTTTGT
844 AAGTCTAAGTCCATGCCTCAAATGAGTCAAACATGGATTCTAGTAATAATCTTCATTCATTTTGT
* *
287658 GATTAAGCACTACAAACACCTTCTCCTCATTAGGATAAATGAT
909 GATTAGGCACTACAAACACATTCTCCTCATTAGGATAAATGAT
*
287701 ATTGATGATTTTATTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCATAAAATCAAAGTTCAT
1 ATTGATGATTTTATTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCTTAAAATCAAAGTTCAT
* * * * * *
287766 CTCTTAAATAAGGCAAGCATTAATTCTCGTAACAGTCCCAATTCTTCTCAAAATTGGGAACTAAA
66 CTCTTAAATAAGGCAAGCACTGATTCTCGTAACAGTCCCCATTCTTTTCAAGATTGGGAACCAAA
* * * * * *
287831 AACATTTTCCCTTTATTAAGATACGTGACATTGATGCTTTGGGAAT-GCAAGAAAAGCTATTCGT
131 ACCATATTCCCTTCATTAGGATACATGACATTGATGCTTTGGG-ATCGCAAGAAAAGCTATTCTT
* * * *
287895 TCCACCATTTTTGATAGAATCAAAGTTTGTATCCTTAGTAAGACAAACATGAATAGTCATACTAA
195 TCCACCGTTTTTGATAGAATCAAAGTTTGTCTCCTAAATAAGACAAACATGAATAGTCATACTAA
* * * * *
287960 TCCCCATTCTTTTCAAGG-TTAGGCACCATAAACATAGACTTCACATAAGGATACATGATATTGG
260 TCCCCATTCTTTTC-AGGATTAGGCACCACAAACATAGTCTTCTCATAAGGATACACGATATTGA
* * * * * * *
288024 CGCTTTGGTTTAGCAAGAAAAGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTCATGCCTCA
324 CGCTTTGGTTTCGCAAGAAAGGCTTTCTCCCCACCAATTTTTGTAAAGTCTAAGTCCGTGCCTCA
* * * * *
288089 AATTAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACCATAAACACA
389 AATGAGTCAAACATGGATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACTACAAACACA
* *
288154 TTCTCCTCATTAGGGTAAATGATATTGATGATTTTCTTTTGCAT-GAAATTGTTTCCTTTGCCCT
454 TTCTCCTCATTAGGATAAATGATATTGATGATTTTATTTTGCATGGAAA-TGTTTCCTTTGCCCT
* * * * **
288218 ATTTTCCTTAAAATCAAAGTTCATC-CGTTAAAAAAGGTAAGCATTGA-TCTTCGTAACAATCTT
518 ATTTTCCTTAAAATCAAAGTTCATCTC-TTAAATAAGGCAAGCACTGATTCTT-GTAACAGTCCC
* * * * * *
288281 CATTCTTTTCAAAATTGGGAACCAAAAACACAATCCATTCATTAGGATACATGACATTGATGCTT
581 CGTTCTTTTCAAGATTGGGAACCAAAACCATATTCCCTTCATTAGGATACATGACATTGATGCTT
* * * * * * * * *
288346 TGGTGTTGCAAGAAAAGCTTTTCTTTCAACCATTTTTGTTAGAATCAAAATTTGTCTCTTCAATA
646 TGG-ATCGCAAGAAAAGCTATTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCCTAAATA
* * * * *
288411 AGACAAACATGAACAGTCATACTAATCCCCATTCATTTCAGGAATAGGCACCATAAACATAGTCT
710 AGACAAACATGAATAGTCATACTAATCCCCATTCCTTTTAGGATTAGGCACCACAAACATAGTCT
* * *
288476 TCGT-ATAAGGATACACGATATTGAAGCTTTGGTTTCCCAAGAAAGGCTTTCTTCCCACCAATTT
775 TC-TCATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTCCCCACCAATTT
* * *** * *
288540 TTATAATGTCTAAGTTTGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCAT
839 TTGTAAAGTCTAAGTCCATGCCTCAAATGAGTCAAACATGGATTCTAGTAATAATCTTCATTCAT
* *
288605 TTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGGTAAATGAT
904 TTTGTGATTAGGCACTACAAACACATTCTCCTCATTAGGATAAATGAT
** * * *
288653 ATTGATGATTTCCTTTTGCATGGAAATGTTTCCTTTGCCCTTTTTTCCTTAAATTCAAAGTGCAT
1 ATTGATGATTTTATTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCTTAAAATCAAAGTTCAT
* * * * * *
288718 CTCTTCAATAAGGCAAGCATTGATTGTCGTAACAATCTCCATTCTTTTCATGATTGGGAACCAAA
66 CTCTTAAATAAGGCAAGCACTGATTCTCGTAACAGTCCCCATTCTTTTCAAGATTGGGAACCAAA
** * * * * * * * *
288783 ATGACAATCCCTTTAGTAGGATACATGACACTCATGCTTTGGTG-TCACAAGAAAAGCTTTTCTT
131 ACCATATTCCCTTCATTAGGATACATGACATTGATGCTTTGG-GATCGCAAGAAAAGCTATTCTT
* * * * ** *
288847 TCGACTG-TTTTGTTAGAATTAAAGTTTGTCTATTCAATAAGACAAACATGAATAGTCATACTAA
195 TCCACCGTTTTTGATAGAATCAAAGTTTGTCTCCTAAATAAGACAAACATGAATAGTCATACTAA
* ** * *
288911 TCCCCATTCATTTCAATATTAGACACCATAAACATAGTCTTC-CTATAAGGA-ACCAC-AGTATT
260 TCCCCATTCTTTTCAGGATTAGGCACCACAAACATAGTCTTCTC-ATAAGGATA-CACGA-TATT
* ** * * * * * * *
288973 GAAGCTTTGGTTTCGCAAGAAACACTTTTTTCCCACCAATTTTTATAATGTTTAAGTTCGTGCCC
322 GACGCTTTGGTTTCGCAAGAAAGGCTTTCTCCCCACCAATTTTTGTAAAGTCTAAGTCCGTGCCT
** * *
289038 CAAATGAGAGAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACA
387 CAAATGAGTCAAACATGGATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACTACAAACA
289103 CATTCTCCTCATTA
452 CATTCTCCTCATTA
289117 AGGTAAAAAA
Statistics
Matches: 5486, Mismatches: 641, Indels: 82
0.88 0.10 0.01
Matches are distributed among these distances:
948 139 0.03
949 763 0.14
950 1261 0.23
951 2070 0.38
952 1244 0.23
953 9 0.00
ACGTcount: A:0.31, C:0.20, G:0.14, T:0.35
Consensus pattern (951 bp):
ATTGATGATTTTATTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCTTAAAATCAAAGTTCAT
CTCTTAAATAAGGCAAGCACTGATTCTCGTAACAGTCCCCATTCTTTTCAAGATTGGGAACCAAA
ACCATATTCCCTTCATTAGGATACATGACATTGATGCTTTGGGATCGCAAGAAAAGCTATTCTTT
CCACCGTTTTTGATAGAATCAAAGTTTGTCTCCTAAATAAGACAAACATGAATAGTCATACTAAT
CCCCATTCTTTTCAGGATTAGGCACCACAAACATAGTCTTCTCATAAGGATACACGATATTGACG
CTTTGGTTTCGCAAGAAAGGCTTTCTCCCCACCAATTTTTGTAAAGTCTAAGTCCGTGCCTCAAA
TGAGTCAAACATGGATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACTACAAACACATT
CTCCTCATTAGGATAAATGATATTGATGATTTTATTTTGCATGGAAATGTTTCCTTTGCCCTATT
TTCCTTAAAATCAAAGTTCATCTCTTAAATAAGGCAAGCACTGATTCTTGTAACAGTCCCCGTTC
TTTTCAAGATTGGGAACCAAAACCATATTCCCTTCATTAGGATACATGACATTGATGCTTTGGAT
CGCAAGAAAAGCTATTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCCTAAATAAGACAA
ACATGAATAGTCATACTAATCCCCATTCCTTTTAGGATTAGGCACCACAAACATAGTCTTCTCAT
AAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTCCCCACCAATTTTTGTAAA
GTCTAAGTCCATGCCTCAAATGAGTCAAACATGGATTCTAGTAATAATCTTCATTCATTTTGTGA
TTAGGCACTACAAACACATTCTCCTCATTAGGATAAATGAT
Found at i:288144 original size:158 final size:157
Alignment explanation
Indices: 287978--288659 Score: 399
Period size: 159 Copynumber: 4.3 Consensus size: 157
287968 CTTTTCAAGG
* * **
287978 TTAGGCACCATAAACATAGACTTCACATAAGGATACATGATATTGGCGCTTTGGTTTAGCAAGAA
1 TTAGGCACCATAAACACAGACTCCACATAAGGATACATGATATTGATGCTTTGGTTT-GCAAGAA
* * *
288043 AAGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTCATGCC-TCAAATTAGACAAACATGGAT
65 AAGCTTTCTTCCCACCAATTTTTATAATATCAAAGTTCATGCCGTCAAATAAGACAAACATGGA-
*
288107 TCTAGTAATGATCTTCATTCATTTTGTGA
129 TCTAGTAATAATCTTCATTCATTTTGTGA
** * * * * * ** *
288136 TTAGGCACCATAAACACATTCTCCTCATTAGGGTAAATGATATTGATGATTTTCTTTTGCATGAA
1 TTAGGCACCATAAACACAGACTCCACATAAGGATACATGATATTGATG-CTTTGGTTTGCAAGAA
* ** * * * * ** *
288201 ATTG-TTTCCTTTGC-CCTATTTTCCT-TAAAATCAAAGTTCAT-CCGTTAAAAAAGGTAAGCAT
65 A-AGCTTT-CTTCCCACCAATTTT--TATAATATCAAAGTTCATGCCGTCAAATAAGACAAACAT
* * * ***
288262 TGATCTTCGTAACAATCTTCATTC-TTTTCAAAA
126 GGATC-TAGTAATAATCTTCATTCATTTT-GTGA
* * * * *
288295 TTGGGAACCAAAAACACA-A-TCCATTCATTAGGATACATGACATTGATGCTTTGGTGTTGCAAG
1 TTAGGCACCATAAACACAGACTCCA--CATAAGGATACATGATATTGATGCTTTGGT-TTGCAAG
* * * * *
288358 AAAAGCTTTTCTTTCAACC-ATTTTTGTTAGA-ATCAAAATT--TGTCTCTTC-AATAAGACAAA
63 AAAAGC-TTTCTTCCCACCAATTTTT-ATA-ATATCAAAGTTCATG-C-CGTCAAATAAGACAAA
* ** *
288418 CAT-GAAC-AGTCATACTAATCCCCATTCATTTCAG-GA
123 CATGGATCTAGT-A-A-TAATCTTCATTCATTT-TGTGA
* * * * ** * * *
288454 ATAGGCACCATAAACATAGTCTTCGTATAAGGATACACGATATTGAAGCTTTGGTTTCCCAAGAA
1 TTAGGCACCATAAACACAGACTCCACATAAGGATACATGATATTGATGCTTTGGTTT-GCAAGAA
* * * ** *
288519 AGGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTTGTGCC-TCAAATGAGACAAACATGGAT
65 AAGCTTTCTTCCCACCAATTTTTATAATATCAAAGTTCATGCCGTCAAATAAGACAAACATGGA-
*
288583 TCTAGTAATGATCTTCATTCATTTTGTGA
129 TCTAGTAATAATCTTCATTCATTTTGTGA
* ** * * * *
288612 TTAGGCACTATAAACACATTCTCCTCATTAGGGTAAATGATATTGATG
1 TTAGGCACCATAAACACAGACTCCACATAAGGATACATGATATTGATG
288660 ATTTCCTTTT
Statistics
Matches: 384, Mismatches: 103, Indels: 74
0.68 0.18 0.13
Matches are distributed among these distances:
156 2 0.01
157 10 0.03
158 157 0.41
159 194 0.51
160 16 0.04
161 5 0.01
ACGTcount: A:0.32, C:0.19, G:0.15, T:0.35
Consensus pattern (157 bp):
TTAGGCACCATAAACACAGACTCCACATAAGGATACATGATATTGATGCTTTGGTTTGCAAGAAA
AGCTTTCTTCCCACCAATTTTTATAATATCAAAGTTCATGCCGTCAAATAAGACAAACATGGATC
TAGTAATAATCTTCATTCATTTTGTGA
Found at i:289468 original size:399 final size:398
Alignment explanation
Indices: 288731--289517 Score: 1032
Period size: 399 Copynumber: 2.0 Consensus size: 398
288721 TTCAATAAGG
* * * *
288731 CAAGCATTGATTGTCGTAACAATCTCCATTCTTTTCATGATTGGGAACCAAAATGACAATCCCTT
1 CAAGCATTGATTCTCGTAACAATCCCCATTCTTCTCAAGATTGGGAACCAAAATGACAATCCCTT
* * * * * *
288796 TAGTAGGATACATGACACTCATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCGACTGTTTTGTT
66 CAGTAGGATACACGACACTAATGCTTTGGTGTCACAAGAAAAGCTATTCTTTCGACCGTTTTGAT
* *
288861 AGAATTAAAGTTTGTCTATTCAATAAGACAAACATGAATAGTCATACTAATCCCCATTCATTTCA
131 AGAATCAAAGTTTGTCTATTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCATTTCA
* * *
288926 ATATTAGACACCATAAACATAGTCTTCCTATAAGGAACCACAGTATTGAAGCTTTGGTTTCGCAA
196 AGATTAGACACCACAAACATAGTCTTCCTATAAGGAACCACAGCATTGAAGCTTTGGTTTCGCAA
* * * * *
288991 GAAACACTTTTTTCCCACCAATTTTTATAATGTTTAAGTTCGTGCCCCAAATGAGAGAAACATGG
261 GAAACACTTTCTCCCCACCAATTTTTATAATGTTTAAGTCCGTACCCCAAATGAGACAAACATGG
289056 ATTCTAGTAATGATCT-TCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAAGG
326 ATTCTAGTAATGATCTGT-ATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAAGG
289120 TAAAAAAGA
390 TAAAAAAGA
* * ***
289129 CAAGCATTGATTCTCGTAATAGTCCCCATTCTTCTCAAGATTGGGAACCAAAAAT-ATTTTCCCT
1 CAAGCATTGATTCTCGTAACAATCCCCATTCTTCTCAAGATTGGGAACC-AAAATGACAATCCCT
* * * *
289193 TCATTAGGATACACGACATTAATGCTTTGG-GATCGCAAGAAAAGCTATTCTTTCTACCGTTTTT
65 TCAGTAGGATACACGACACTAATGCTTTGGTG-TCACAAGAAAAGCTATTCTTTCGACCG-TTTT
* *
289257 GATAGAATCAAAGTTTGTGTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTC-TG
128 GATAGAATCAAAGTTTGTCTATTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCAT-
* * * * * *
289321 TTTAGGATTAGGCATCACAAACATAGTCTT-CTCATAAGG-A-CATACGACATTGATGCTTTGGT
192 TTCAAGATTAGACACCACAAACATAGTCTTCCT-ATAAGGAACCACA-G-CATTGAAGCTTTGGT
** * * * * *
289383 TTCGCAAGAAAGGCTTTCTCCCCTCCAATTTTTGTAAAT-TTTAAGTCCGTACCTCAAATGGGTC
254 TTCGCAAGAAACACTTTCTCCCCACCAATTTTTAT-AATGTTTAAGTCCGTACCCCAAATGAGAC
*
289447 AAACATGGATTCTAGTAATGATCTGTATTCATTTTGTGATTAGTCACTATAAACACATTCTCCTC
318 AAACATGGATTCTAGTAATGATCTGTATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTC
289512 ATTAAG
383 ATTAAG
289518 ATAATTGATA
Statistics
Matches: 335, Mismatches: 45, Indels: 17
0.84 0.11 0.04
Matches are distributed among these distances:
397 4 0.01
398 102 0.30
399 225 0.67
400 4 0.01
ACGTcount: A:0.32, C:0.20, G:0.15, T:0.34
Consensus pattern (398 bp):
CAAGCATTGATTCTCGTAACAATCCCCATTCTTCTCAAGATTGGGAACCAAAATGACAATCCCTT
CAGTAGGATACACGACACTAATGCTTTGGTGTCACAAGAAAAGCTATTCTTTCGACCGTTTTGAT
AGAATCAAAGTTTGTCTATTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCATTTCA
AGATTAGACACCACAAACATAGTCTTCCTATAAGGAACCACAGCATTGAAGCTTTGGTTTCGCAA
GAAACACTTTCTCCCCACCAATTTTTATAATGTTTAAGTCCGTACCCCAAATGAGACAAACATGG
ATTCTAGTAATGATCTGTATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAAGGT
AAAAAAGA
Found at i:290031 original size:476 final size:476
Alignment explanation
Indices: 289120--290933 Score: 2387
Period size: 476 Copynumber: 3.8 Consensus size: 476
289110 CTCATTAAGG
* * * * * * * *
289120 TAAAAAAGACAAGCATTGATTCTCGTAATAGTCCCCATTCTTCTCAAGATTGGGAACCAAAAATA
1 TAAATAAGGCAAGCAATGATTCTCATAACAGTCCCCATTCTTTTCAAGATTAGGAACCAAAAACA
* * * *
289185 TTTTCCCTTCATTAGGATACACGACATTAATGCTTTGGGATCGCAAGAAAAGCTATTCTTTCTAC
66 TATTCCCTTCATTAGGATACATGACATTGATGCTTTGGGATCGCAAGAAAAGCTATTCTTTCCAC
* *
289250 CGTTTTTGATAGAATCAAAGTTTGTGTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCC
131 CGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATAAATAGTCATACTAATCCCC
* * * * * *
289315 ATTCTGTTT-AGGATTAGGCATCACAAACATAGTCTTCTCATAAGGACATACGACATTGATGCTT
196 ATTCT-TTTCAGGATTAGGCACCATAAACATAGTCTTCTTATAAGGATACACGATATTGATGCTT
* * *
289379 TGGTTTCGCAAGAAAGGCTTTCTCCCCTCCAATTTTTGTAAAT-TTTAAGTCCGTACCTCAAATG
260 TGGTTTCGCAAGAAAGGCTTTCTCCCCACCAATTTTTAT-AATGTCTAAGTCCGTACCTCAAATG
* * * *
289443 GGTCAAACATGGATTCTAGTAATGATCTGT-ATTCATTTTGTGATTAGTCACTATAAACACATTC
324 AGACAAACATGGATTCTAGTAATGATCT-TCATTCATTTTGTGATAAGGCACTATAAACACATTC
* * * *
289507 TCCTCATTAAGATAATTGATATTGATGATTTTAGTTTGCATAGAGATGTTTCCTTTGCCCTATTT
388 TCCTCATTAAGATAAATGATATTGATGATTTCAGTTTGCATGGAGATGTTTCCTTTGCCTTATTT
*
289572 TCCTTCAAATCAAAGTTCATCCCT
453 TCCTTAAAATCAAAGTTCATCCCT
* * *
289596 TAAATAAGGCAAGTACTGATTCTCATAACAGTCCCCATTCTTTTCAAGATTGGGAACCAAAAACA
1 TAAATAAGGCAAGCAATGATTCTCATAACAGTCCCCATTCTTTTCAAGATTAGGAACCAAAAACA
* * * **
289661 TATTCCCCTCTTTAGGATACATGACATTGATGCTTTGGGATCGTAAGAAAAGCTATTCTTTCCTT
66 TATTCCCTTCATTAGGATACATGACATTGATGCTTTGGGATCGCAAGAAAAGCTATTCTTTCCAC
* *
289726 TGTTTTTGATAGAATCAAAGTTTGTCTCTTAAGTAAGACAAACATAAATAGTCATACTAATCCCC
131 CGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATAAATAGTCATACTAATCCCC
* * * * * * * *
289791 CTTCTTTTCAAGATTAGGCACCATAAATATACTCTTTTTATAAGGATTCACGTTTTTGATGCTTT
196 ATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTTATAAGGATACACGATATTGATGCTTT
* * * * *
289856 GGTTTCGCAAGAAAGGCTTTCTCCCCTCCAATTTTTGTAAAT-TCTAAGTCCATACCTCAAAAGG
261 GGTTTCGCAAGAAAGGCTTTCTCCCCACCAATTTTTAT-AATGTCTAAGTCCGTACCTCAAATGA
* * * **
289920 GTCAAACATGGATTCTAGTAATGATCTTTATTCATTTTGTGATTACTCACTATAAACACATTCTC
325 GACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATAAGGCACTATAAACACATTCTC
289985 CTCATTAAGATAAATGATATTGATGATTTCAGTTTGCATGGAGATGTTTCCTTTGCCTTATTTTC
390 CTCATTAAGATAAATGATATTGATGATTTCAGTTTGCATGGAGATGTTTCCTTTGCCTTATTTTC
*
290050 CTTAAAATCAAAGTTCATCTCT
455 CTTAAAATCAAAGTTCATCCCT
* * * *
290072 TAAATAAGGCAAGGAATGATTCTCATAACAGTCTCCATTCTTTTCATGATTAGAAACCAAAAACA
1 TAAATAAGGCAAGCAATGATTCTCATAACAGTCCCCATTCTTTTCAAGATTAGGAACCAAAAACA
* * * * * *
290137 CAATCCCTTCATTAAGATGCATGACATTGATGCCTTGGGATCGCAAGAAATGCTATTCTTTCCAC
66 TATTCCCTTCATTAGGATACATGACATTGATGCTTTGGGATCGCAAGAAAAGCTATTCTTTCCAC
* *
290202 CATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGATAAACA-AGAATAGTCATACTAATCCC
131 CGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATA-AATAGTCATACTAATCCC
* * ** * * * *
290266 TATGCTTTTCAGGATTAGGCACCATAATTATAGTCTTATTATTAGGATACATGATATTGACGCTT
195 CATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTTATAAGGATACACGATATTGATGCTT
* * * * *
290331 TGGTTTCACAAGAAAAGCTTTCTTCCCACCAATTTTTATAATGTCTATG-CTCGTGCCTCAAATG
260 TGGTTTCGCAAGAAAGGCTTTCTCCCCACCAATTTTTATAATGTCTAAGTC-CGTACCTCAAATG
** *
290395 AGACAAACATGGATTCTAGTAATGATCTTCATTTGTTTTGTGATAAGGCACTATAAACACATTTT
324 AGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATAAGGCACTATAAACACATTCT
* * *
290460 CC-CATTAGGGTAAATGATATTGATGATATTC--TTTGACATGGAAATGTTTCCTTTGCCTTATT
389 CCTCATTAAGATAAATGATATTGATGAT-TTCAGTTTG-CATGGAGATGTTTCCTTTGCCTTATT
* *
290522 TTCTTTAAAATCAAAGTCCATCCCAT
452 TTCCTTAAAATCAAAGTTCATCCC-T
* * * * * *
290548 T-AATAAGGTAAGCATTGATTCT-AGGAACAGTCTCCATTTTTTTCAAGATTAGGAACAAAAAAC
1 TAAATAAGGCAAGCAATGATTCTCA-TAACAGTCCCCATTCTTTTCAAGATTAGGAACCAAAAAC
* * * * *
290611 -TCATTCCCTTGAATAGGATACATGACATTGATGCTTTGGTG-TCACAAAAAAAGCTTTTCTTTC
65 AT-ATTCCCTTCATTAGGATACATGACATTGATGCTTTGG-GATCGCAAGAAAAGCTATTCTTTC
* * * *
290674 AACCG-TTTTGTTAGAATCAAAGTTTGTCTCTTTAATAAGACAAACATGAATAGTCATACTAATC
128 CACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATAAATAGTCATACTAATC
*
290738 CCCATTCTTTTCAGGATTAGGCACCATAAACATTGTCTTCTTATAAGGATACACGATATTGATGC
193 CCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTTATAAGGATACACGATATTGATGC
* ** *
290803 TTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTTGTATCTCAAAT
258 TTTGGTTTCGCAAGAAAGGCTTTCTCCCCACCAATTTTTATAATGTCTAAGTCCGTACCTCAAAT
*
290868 GAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATAAGGCACTACAAACACATTC
323 GAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATAAGGCACTATAAACACATTC
290933 T
388 T
290934 TCTTGTAGAC
Statistics
Matches: 1177, Mismatches: 148, Indels: 28
0.87 0.11 0.02
Matches are distributed among these distances:
474 234 0.20
475 182 0.15
476 761 0.65
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (476 bp):
TAAATAAGGCAAGCAATGATTCTCATAACAGTCCCCATTCTTTTCAAGATTAGGAACCAAAAACA
TATTCCCTTCATTAGGATACATGACATTGATGCTTTGGGATCGCAAGAAAAGCTATTCTTTCCAC
CGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATAAATAGTCATACTAATCCCC
ATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTTATAAGGATACACGATATTGATGCTTT
GGTTTCGCAAGAAAGGCTTTCTCCCCACCAATTTTTATAATGTCTAAGTCCGTACCTCAAATGAG
ACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATAAGGCACTATAAACACATTCTCC
TCATTAAGATAAATGATATTGATGATTTCAGTTTGCATGGAGATGTTTCCTTTGCCTTATTTTCC
TTAAAATCAAAGTTCATCCCT
Found at i:291560 original size:20 final size:20
Alignment explanation
Indices: 291497--291561 Score: 69
Period size: 20 Copynumber: 3.2 Consensus size: 20
291487 CCTAGATATG
291497 AATGTATCGATACATTCTTC
1 AATGTATCGATACATTCTTC
* * *
291517 AATTTATCGATACATGT-ATG
1 AATGTATCGATACAT-TCTTC
* *
291537 AATGTATCAATACATTCTTT
1 AATGTATCGATACATTCTTC
291557 AATGT
1 AATGT
291562 TTTGATATAT
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
19 1 0.03
20 34 0.94
21 1 0.03
ACGTcount: A:0.34, C:0.14, G:0.11, T:0.42
Consensus pattern (20 bp):
AATGTATCGATACATTCTTC
Found at i:297036 original size:19 final size:19
Alignment explanation
Indices: 297012--297072 Score: 81
Period size: 19 Copynumber: 3.2 Consensus size: 19
297002 GTATCGATAT
*
297012 ATTGTATCGATACATGTTC-
1 ATTGTATCGATACATG-ACA
297031 ATTGTATCGATACATAGACA
1 ATTGTATCGATACAT-GACA
297051 ATTGTATCGATACATGA-A
1 ATTGTATCGATACATGACA
297069 ATTG
1 ATTG
297073 GTAGTAGCTA
Statistics
Matches: 39, Mismatches: 1, Indels: 5
0.87 0.02 0.11
Matches are distributed among these distances:
18 5 0.13
19 18 0.46
20 16 0.41
ACGTcount: A:0.34, C:0.13, G:0.16, T:0.36
Consensus pattern (19 bp):
ATTGTATCGATACATGACA
Found at i:297056 original size:20 final size:20
Alignment explanation
Indices: 297012--297128 Score: 82
Period size: 20 Copynumber: 5.8 Consensus size: 20
297002 GTATCGATAT
*
297012 ATTGTATCGATACAT-GTTC-
1 ATTGTATCGATACATAG-ACA
297031 ATTGTATCGATACATAGACA
1 ATTGTATCGATACATAGACA
297051 ATTGTATCGATACAT-GA-A
1 ATTGTATCGATACATAGACA
* * * *
297069 ATTGGTAGTAGCTACCCTACCACTA
1 ATT-GTA-TCGATA-CATA-GAC-A
*
297094 TTTGTATCGATACATAAGACA
1 ATTGTATCGATACAT-AGACA
297115 A-TGTATCGATACAT
1 ATTGTATCGATACAT
297129 TGTATCGATA
Statistics
Matches: 77, Mismatches: 11, Indels: 19
0.72 0.10 0.18
Matches are distributed among these distances:
18 4 0.05
19 21 0.27
20 33 0.43
21 3 0.04
22 4 0.05
23 6 0.08
24 3 0.04
25 3 0.04
ACGTcount: A:0.34, C:0.17, G:0.15, T:0.33
Consensus pattern (20 bp):
ATTGTATCGATACATAGACA
Found at i:297134 original size:13 final size:12
Alignment explanation
Indices: 297116--297189 Score: 59
Period size: 13 Copynumber: 6.2 Consensus size: 12
297106 CATAAGACAA
297116 TGTATCGATACAT
1 TGTATCGATA-AT
297129 TGTATCGATACA-
1 TGTATCGATA-AT
297141 TG-AT-G--AAT
1 TGTATCGATAAT
297149 TGTATCGATGAAT
1 TGTATCGAT-AAT
*
297162 TGTATTGATGAAT
1 TGTATCGAT-AAT
297175 TGTATCGATACAT
1 TGTATCGATA-AT
297188 TG
1 TG
297190 CTTGTAACGG
Statistics
Matches: 52, Mismatches: 2, Indels: 14
0.76 0.03 0.21
Matches are distributed among these distances:
7 1 0.02
8 3 0.06
9 2 0.04
10 2 0.04
11 2 0.04
12 3 0.06
13 39 0.75
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.39
Consensus pattern (12 bp):
TGTATCGATAAT
Found at i:297137 original size:33 final size:33
Alignment explanation
Indices: 297095--297166 Score: 94
Period size: 33 Copynumber: 2.2 Consensus size: 33
297085 CTACCACTAT
297095 TTGTATCGATACAT-AAGACAATGTATCGAT-ACA
1 TTGTATCGATACATGAAGA-AATGTATCGATGA-A
* *
297128 TTGTATCGATACATGATGAATTGTATCGATGAA
1 TTGTATCGATACATGAAGAAATGTATCGATGAA
297161 TTGTAT
1 TTGTAT
297167 TGATGAATTG
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
33 31 0.89
34 4 0.11
ACGTcount: A:0.35, C:0.11, G:0.18, T:0.36
Consensus pattern (33 bp):
TTGTATCGATACATGAAGAAATGTATCGATGAA
Found at i:300055 original size:19 final size:20
Alignment explanation
Indices: 300012--300063 Score: 72
Period size: 19 Copynumber: 2.6 Consensus size: 20
300002 CACACCCATA
*
300012 TGTATCGATACATTATGCTT
1 TGTATCGATACATTATGCAT
300032 TGTATCGATACATCT-T-CAT
1 TGTATCGATACAT-TATGCAT
300051 TGTATCGATACAT
1 TGTATCGATACAT
300064 AGACAATTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
19 15 0.50
20 14 0.47
21 1 0.03
ACGTcount: A:0.27, C:0.17, G:0.13, T:0.42
Consensus pattern (20 bp):
TGTATCGATACATTATGCAT
Found at i:300152 original size:13 final size:13
Alignment explanation
Indices: 300134--300159 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
300124 CATAAGACAA
300134 TGTATCGATACAT
1 TGTATCGATACAT
300147 TGTATCGATACAT
1 TGTATCGATACAT
300160 GATGAATTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:300155 original size:33 final size:33
Alignment explanation
Indices: 300113--300181 Score: 95
Period size: 33 Copynumber: 2.1 Consensus size: 33
300103 CTACCACTGT
300113 TTGTATCGATACAT-AAGACAATGTATCGATACA
1 TTGTATCGATACATGAAGA-AATGTATCGATACA
* * *
300146 TTGTATCGATACATGATGAATTTTATCGATACA
1 TTGTATCGATACATGAAGAAATGTATCGATACA
300179 TTG
1 TTG
300182 CTTGTAACGG
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
33 29 0.91
34 3 0.09
ACGTcount: A:0.35, C:0.13, G:0.16, T:0.36
Consensus pattern (33 bp):
TTGTATCGATACATGAAGAAATGTATCGATACA
Found at i:309743 original size:11 final size:11
Alignment explanation
Indices: 309727--309763 Score: 56
Period size: 11 Copynumber: 3.3 Consensus size: 11
309717 TCTTCATACT
309727 AAAAAAACAAA
1 AAAAAAACAAA
*
309738 AAAAAACCAAA
1 AAAAAAACAAA
309749 AAAATAAACAAA
1 AAAA-AAACAAA
309761 AAA
1 AAA
309764 GAAGGGTCCA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
11 14 0.61
12 9 0.39
ACGTcount: A:0.86, C:0.11, G:0.00, T:0.03
Consensus pattern (11 bp):
AAAAAAACAAA
Found at i:311023 original size:28 final size:28
Alignment explanation
Indices: 310983--312061 Score: 1038
Period size: 28 Copynumber: 38.8 Consensus size: 28
310973 TTCATCTCTG
*
310983 CAAAGCCCACAAGTCAGTGGTATCCTTT
1 CAAAGCCCACAAGTCAGTGGCATCCTTT
*
311011 CAAAGCCCACAAGTCAGTGCCATCCTTT
1 CAAAGCCCACAAGTCAGTGGCATCCTTT
* *
311039 CAAAGTCCATAAGTCAGTGGCA-CCTTTT
1 CAAAGCCCACAAGTCAGTGGCATCC-TTT
* * *
311067 CAAAGCCCGCAAGTCAGTGGTATCTTTT
1 CAAAGCCCACAAGTCAGTGGCATCCTTT
* * *
311095 CGAAGCCCATAAGTCAGTGGCATCCATT
1 CAAAGCCCACAAGTCAGTGGCATCCTTT
*
311123 CAAAGCCCATAAGTCAGTGGCATCCTTT
1 CAAAGCCCACAAGTCAGTGGCATCCTTT
* *
311151 TAAAGCCCACAAGTTAGTGGCAT-CTCTT
1 CAAAGCCCACAAGTCAGTGGCATCCT-TT
311179 CAAAGCCCACAAGTCAGTGGCATCCTTT
1 CAAAGCCCACAAGTCAGTGGCATCCTTT
* *
311207 CAAAGCCCACAAGTCGGTGGCATCTTTT
1 CAAAGCCCACAAGTCAGTGGCATCCTTT
* * * *
311235 CAAAGCACAAAAGTCAGTGACATCTTTT
1 CAAAGCCCACAAGTCAGTGGCATCCTTT
*
311263 CCAAGCCCACAAGTCAGTGGCA-CCTTTT
1 CAAAGCCCACAAGTCAGTGGCATCC-TTT
* *
311291 CAAAGCCCACAAGTTAGTGGC-TCATTTT
1 CAAAGCCCACAAGTCAGTGGCATC-CTTT
* *
311319 CAAAGCCCACAAGTCAGTAGCATCTTTTT
1 CAAAGCCCACAAGTCAGTGGCATC-CTTT
*
311348 C-AAGCTCACAAGTCAGTGGCA-CCTTTT
1 CAAAGCCCACAAGTCAGTGGCATCC-TTT
* * * *
311375 CAAAGCCTAGAAGTTAGTGGCATCTTTT
1 CAAAGCCCACAAGTCAGTGGCATCCTTT
* * * *
311403 CCAAGCCCACAAGTTAGTGGCAACTTTT
1 CAAAGCCCACAAGTCAGTGGCATCCTTT
*
311431 CAAAGCCCACAAGTTAGTGGC-TCCTTTT
1 CAAAGCCCACAAGTCAGTGGCATCC-TTT
* * *
311459 CAAAGCCCACAAGTCAATAGCATCTTTT
1 CAAAGCCCACAAGTCAGTGGCATCCTTT
* * *
311487 CCAAGCTCACAAGTTAGTGGCA-CCTTTT
1 CAAAGCCCACAAGTCAGTGGCATCC-TTT
* * *
311515 CAAAGCCCACAAGTTAGTGGCCT-TTTT
1 CAAAGCCCACAAGTCAGTGGCATCCTTT
** *
311542 TTAAGCTCACAAGTCAGTGGCA-CCTTTT
1 CAAAGCCCACAAGTCAGTGGCATCC-TTT
* ** *
311570 CGAAA-CCCATAAG-CTAGTGGTTTCTTTT
1 C-AAAGCCCACAAGTC-AGTGGCATCCTTT
* * *
311598 CAAAGCCGATAAGTCAGTGGCATCATTTT
1 CAAAGCCCACAAGTCAGTGGCATC-CTTT
* * * *
311627 C-AAGCTCATAAATTAGTGGCA-CCTTTT
1 CAAAGCCCACAAGTCAGTGGCATCC-TTT
* *
311654 CAAAGCCCACACGTCAGTGGCATCTTTT
1 CAAAGCCCACAAGTCAGTGGCATCCTTT
* * *
311682 CAAAGCTCACAAGTTAGTGGCA-CATTTT
1 CAAAGCCCACAAGTCAGTGGCATC-CTTT
* *
311710 CAAAGCCCACAAGTCAATGGCAT-TTTCT
1 CAAAGCCCACAAGTCAGTGGCATCCTT-T
* *
311738 CAAAGCCCATAAGTCAGTGGCATCAATTT
1 CAAAGCCCACAAGTCAGTGGCATC-CTTT
*
311767 -AAAGCCCACAAGTCAGTGGCATCTTTT
1 CAAAGCCCACAAGTCAGTGGCATCCTTT
* *
311794 TAAAGCCCACAAGTCAGCGGCATCCTTT
1 CAAAGCCCACAAGTCAGTGGCATCCTTT
* * * * *
311822 GAAAGCCCACCAGTTAATGGCACCCTTT
1 CAAAGCCCACAAGTCAGTGGCATCCTTT
*
311850 CAAAGCCCACAAATCAGTGGCATCCTTT
1 CAAAGCCCACAAGTCAGTGGCATCCTTT
* * *
311878 CAAAGCCCATAAGTTAGTGACATCCTTT
1 CAAAGCCCACAAGTCAGTGGCATCCTTT
* * *
311906 CAAAGCCCACAAGTTAGTGGCACCCTGT
1 CAAAGCCCACAAGTCAGTGGCATCCTTT
*
311934 CAAAGCCCACAAGTCAGTGGCACCCTTT
1 CAAAGCCCACAAGTCAGTGGCATCCTTT
* *
311962 CAAAGCCCACAAGTTAGTGACA-CC--T
1 CAAAGCCCACAAGTCAGTGGCATCCTTT
311987 ---A-CCCACAAGTCAGTGGCATCCTTT
1 CAAAGCCCACAAGTCAGTGGCATCCTTT
* *
312011 CAAAAGCCCATAAGTCAGTGGCA-GCTATT
1 C-AAAGCCCACAAGTCAGTGGCATCCT-TT
*
312040 CAAAGCCCATAAGTCAGTGGCA
1 CAAAGCCCACAAGTCAGTGGCA
312062 ATTTTCTCTA
Statistics
Matches: 873, Mismatches: 137, Indels: 82
0.80 0.13 0.08
Matches are distributed among these distances:
21 15 0.02
22 3 0.00
24 1 0.00
25 1 0.00
27 50 0.06
28 758 0.87
29 43 0.05
30 2 0.00
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (28 bp):
CAAAGCCCACAAGTCAGTGGCATCCTTT
Found at i:312043 original size:78 final size:77
Alignment explanation
Indices: 311911--312058 Score: 208
Period size: 78 Copynumber: 1.9 Consensus size: 77
311901 CCTTTCAAAG
*
311911 CCCACAAGTTAGTGGCACCCTGTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGT
1 CCCACAAGTCAGTGGCACCCTGTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGT
*
311976 TAGTGACACCTA
66 CAGTGACACCTA
* * * * *
311988 CCCACAAGTCAGTGGCATCCTTTCAAAAGCCCATAAGTCAGTGGCA-GCTATTCAAAGCCCATAA
1 CCCACAAGTCAGTGGCACCCTGTC-AAAGCCCACAAGTCAGTGGCACCCT-TTCAAAGCCCACAA
312052 GTCAGTG
64 GTCAGTG
312059 GCAATTTTCT
Statistics
Matches: 62, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
77 23 0.37
78 39 0.63
ACGTcount: A:0.30, C:0.31, G:0.19, T:0.20
Consensus pattern (77 bp):
CCCACAAGTCAGTGGCACCCTGTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGT
CAGTGACACCTA
Found at i:312924 original size:35 final size:38
Alignment explanation
Indices: 312878--312948 Score: 121
Period size: 35 Copynumber: 1.9 Consensus size: 38
312868 CTTTTACCCA
312878 GATGTATCGATACATT-TTC-ATGTATC-ATACATTAT
1 GATGTATCGATACATTCTTCAATGTATCGATACATTAT
312913 GATGTATCGATACATTCTTCAATGTATCGATACATT
1 GATGTATCGATACATTCTTCAATGTATCGATACATT
312949 TTGTCTTTTT
Statistics
Matches: 33, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
35 16 0.48
36 3 0.09
37 7 0.21
38 7 0.21
ACGTcount: A:0.31, C:0.15, G:0.13, T:0.41
Consensus pattern (38 bp):
GATGTATCGATACATTCTTCAATGTATCGATACATTAT
Found at i:312939 original size:20 final size:18
Alignment explanation
Indices: 312879--312950 Score: 101
Period size: 17 Copynumber: 3.9 Consensus size: 18
312869 TTTTACCCAG
312879 ATGTATCGATACATTTTC
1 ATGTATCGATACATTTTC
* *
312897 ATGTATC-ATACATTATG
1 ATGTATCGATACATTTTC
312914 ATGTATCGATACATTCTTC
1 ATGTATCGATACATT-TTC
312933 AATGTATCGATACATTTT
1 -ATGTATCGATACATTTT
312951 GTCTTTTTAC
Statistics
Matches: 47, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
17 15 0.32
18 14 0.30
19 3 0.06
20 15 0.32
ACGTcount: A:0.31, C:0.15, G:0.11, T:0.43
Consensus pattern (18 bp):
ATGTATCGATACATTTTC
Found at i:317037 original size:159 final size:158
Alignment explanation
Indices: 316323--320376 Score: 464
Period size: 159 Copynumber: 25.5 Consensus size: 158
316313 TAACAATCTT
* * * * * * * * * *
316323 CATTCTTTTCATGATTAGGAACTAAAAACACAATC-CCTTCTTTAGGATACATAACATTGATGCT
1 CATTCTTTTCAGGATTAGGCACCATAAACACAGTCTCC-TCATAAGGATAAATGATATTGATGCT
** * * * ** *
316387 TTGGTTTCACTAGAAAAGCTTTTCTTTCAACTGTTTTTGTTATAATAAAAGTTTGTCTCTTTAAT
65 TTGGTTTTGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGTTA-AATCAAAGTTTACCTCTTAAAT
*
316452 AAGATAAACATGAATAGTCATACTAATCCC
129 AAGATAAACATGAATAGTCAAACTAATCCC
* * * * * *
316482 CATTTTTTTCAGGATTAGGCACTATAAACATAGTACTTCTTATAAGGATACAT-AGTATTGATGC
1 CATTCTTTTCAGGATTAGGCACCATAAACACAGT-CTCCTCATAAGGATAAATGA-TATTGATGC
* * * * * * * *
316546 TTTGGTTTTGCAAGAAAGGC-TTTATTCCCACCAATTTTT-ATAATGTCTAAGTTCGTACCTC--
64 TTTGGTTTTGCAAGAAAAGCTTTTCTTTCAACC-GTTTTTGTTAA-ATCAAAGTT--TACCTCTT
* * * * **
316607 AAATAAGACAAACATGGATTA-TACTAA-TGATCTT
125 AAATAAGATAAACAT-GAATAGT-CAAACTAATCCC
* * * * * * * *
316641 CATT-TATTT-TGTGATTAGGTACTATAAACACATTCTCCGCATTAGGGTAAATGATATTGATGA
1 CATTCT-TTTCAG-GATTAGGCACCATAAACACAGTCTCCTCATAAGGATAAATGATATTGATGC
** * * * *
316704 TTTTCTTTTGCATGGAAATG-TTTTCTTT--GCC-TATTTTCCTTAAAATCAAAGTTTATCC-CT
64 TTTGGTTTTGCA-AGAAAAGCTTTTCTTTCAACCGT-TTTT-GTT-AAATCAAAGTTTA-CCTCT
* * * ** ** *
316764 TAAATAAGGTAAGCATTGATTCTTGTAAC-AATCTC
124 TAAATAAGATAAACA-TGAATAGTCAAACTAATCCC
* * * * * * * *
316799 CATTCTTTTTAGGATTGGGAACCAAAAACGCAATC-CCTTCATTAGGATACAA-GACATTGATGC
1 CATTCTTTTCAGGATTAGGCACCATAAACACAGTCTCC-TCATAAGGATA-AATGATATTGATGC
* *
316862 TTTGGTGTTGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGTTAGAATCAAAGTTTACCTCTTTAA
64 TTTGGTTTTGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGTTA-AATCAAAGTTTACCTCTTAAA
*
316927 TAAGATAAATATGAATAGTCAAACTAATCCC
128 TAAGATAAACATGAATAGTCAAACTAATCCC
* * *
316958 CATTCTTTTCAGGATTAGGCACCACAAACATAGTCTTCTCATAAGGATAAATGATATTGATGCTT
1 CATTCTTTTCAGGATTAGGCACCATAAACACAGTCTCCTCATAAGGATAAATGATATTGATGCTT
* * * * * * ** * *
317023 TAGTTTTGCAAGAAAGGC-TTTCTTCCCACCAATTTTTG-TAAAGTCTAAGTCCATGC-CTTGAA
66 TGGTTTTGCAAGAAAAGCTTTTCTTTCAACC-GTTTTTGTTAAA-TCAAAGTTTA-CCTCTTAAA
* * * * **
317085 TGAG-TCACACATGGAT--TCTAGTAA-TGATCTT
128 TAAGAT-AAACATGAATAGTC-A--AACTAATCCC
* * * * * * ** * *
317116 CATTCATTTT--GTGATTAGGTACTATAAATAGATTCTCCTCATTACTATAAAAGATATTGATGA
1 CATTC-TTTTCAG-GATTAGGCACCATAAACACAGTCTCCTCATAAGGATAAATGATATTGATGC
** * * * * *
317179 TTTTATTTTGCATGGAAATG-TTTCCTTT--ACCTTATTTTCATTAAAATCAAAGTTTATCC-CT
64 TTTGGTTTTGCA-AGAAAAGCTTTTCTTTCAACCGT-TTTT-GTT-AAATCAAAGTTTA-CCTCT
* ** * * ** **
317240 TAAAAAAGGCAAGCAATGATTCTTGTAAC-AATCCC
124 TAAATAAGATAAAC-ATGAATAGTCAAACTAATCCC
* * * * * * * * * * * *
317275 CATTTTTTTCAAGATTGGGAACCAAAAACATATTC-CCTTCATTAGGATACATTACATTTATGCT
1 CATTCTTTTCAGGATTAGGCACCATAAACACAGTCTCC-TCATAAGGATAAATGATATTGATGCT
** * * * * * * * * * *
317339 TTGGGATCGTAAGAAAAGCTATTCTTTCCATCATTTTTGATAGAATCAATGTTTATCTCTAAAAT
65 TTGGTTTTGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGTTA-AATCAAAGTTTACCTCTTAAAT
* * * *
317404 AAGACAAACATGAATAGCCACACTAATCCT
129 AAGATAAACATGAATAGTCAAACTAATCCC
* * * * * *
317434 CATTCTTTTCAGGATTAGGCATCACAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTT
1 CATTCTTTTCAGGATTAGGCACCATAAACACAGTCTCCTCATAAGGATAAATGATATTGATGCTT
* * * * * * * *** *
317499 TGGTTTCGTAAGAAAGGC-TTTCTTCCCACCTATTTTTG-TAAAGTCTAAGTTTGTGTCTCAAAT
66 TGGTTTTGCAAGAAAAGCTTTTCTTTCAACC-GTTTTTGTTAAA-TCAAAGTTTACCTCTTAAAT
* * * **
317562 GAG-TCAAACATGGAT--TCTAGTAA-TGATCTT
129 AAGAT-AAACATGAATAGTC-A--AACTAATCCC
* * * * * * *
317592 CATTCATTTT--GTGATTAGACACAATAAACACATTGTCCTTATTAGGATAAATGATATTGATGA
1 CATTC-TTTTCAG-GATTAGGCACCATAAACACAGTCTCCTCATAAGGATAAATGATATTGATGC
** * * * * * * *
317655 TTTTTTTTTGCATGGAAATCTTTTCTTTGC--CC-TATTTTCCTTAAAATCAAAATTCATCC-CC
64 TTTGGTTTTGCAAGAAAAGCTTTTCTTT-CAACCGT-TTTT-GTT-AAATCAAAGTTTA-CCTCT
* * * * ** * *
317716 AAAATATGACAAGCATCG-ATTCTCGTAAC-AATCTC
124 TAAATAAGATAAACAT-GAATAGTC-AAACTAATCCC
* * * * * *
317751 CATTCCTTTT-AGGATTGGGAACTA-AGAACACATTC-CCTTCATTAA-TATACATG-TCATTGA
1 CATT-CTTTTCAGGATTAGGCACCATA-AACACAGTCTCC-TCA-TAAGGATAAATGAT-ATTGA
* ** * * * ** **
317811 TGCTTTTGTGTCAG-AAGAAAAGTTTTTCTTCCAACCATTTTTGATGGAATCAATA-TTTGTCTC
61 TGCTTTGGT-TTTGCAAGAAAAGCTTTTCTTTCAACCGTTTTTG-TTAAATCAA-AGTTTACCTC
* * * * * * *
317874 TTTAGTAAGACAAACGTGAATAGTCATAC-ATATGCT
123 TTAAATAAGATAAACATGAATAGTCAAACTA-ATCCC
* * * * *
317910 CATTCTTTTCAGGATTAGGCAACACAAACACAGTTTTCTCATTAA-GATAGATGATATTGATGCT
1 CATTCTTTTCAGGATTAGGCACCATAAACACAGTCTCCTCA-TAAGGATAAATGATATTGATGCT
* * * * ** * *
317974 TTGGTTTCGAAAGAAAGGC-TTTCTTCCCTCCAATTTTTG-TAAAGTCGAAGTTTATGCCTC--A
65 TTGGTTTTGCAAGAAAAGCTTTTCTTTCAACC-GTTTTTGTTAAA-TCAAAGTTTA--CCTCTTA
* * * * **
318035 AATGAG-TCAAATATGGAT--TCTAGTAA-TGATCTT
126 AATAAGAT-AAACATGAATAGTC-A--AACTAATCCC
* * * * * * *
318068 CATCCATTTT--GTGATTAGACACAATAAACACATTCTCTTCATTAGGATAAATGATATTGATGA
1 CATTC-TTTTCAG-GATTAGGCACCATAAACACAGTCTCCTCATAAGGATAAATGATATTGATGC
** * * ** * * * *
318131 TTTTCTTTTGCATGGAAATATTTTCTTT--ACCCTATTTTCCTTAAAATCAAAATTCATCCT-TT
64 TTTGGTTTTGCAAGAAAAGCTTTTCTTTCAACCGT-TTTT-GTT-AAATCAAAGTTTA-CCTCTT
* * ** * * *
318193 AAATATGATAAGCATCG-ATTCTCGTAAC-AGTCTC
125 AAATAAGATAAACAT-GAATAGTC-AAACTAATCCC
* * * * * * * * * *
318227 CATCCCTCTCAAGCTTGGGAACCA-AGAACAC--TTTACCTTCAGTAA-GACACATG-TCCATTG
1 CATTCTTTTCAGGATTAGGCACCATA-AACACAGTCT-CC-TCA-TAAGGATAAATGAT--ATTG
* **** * * * * *
318287 ATGCTTTTGTGCCACAAGAAAAGCTTTTCTTCCAACCATTTTTGATAGAATCATTA-TTTATCTC
60 ATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGTTA-AATCA-AAGTTTACCTC
* * ** *
318351 TTTAGA-AAGACAAATGTGAATAGTCATACTAATCCC
123 -TTAAATAAGATAAACATGAATAGTCAAACTAATCCC
** * * * * * * * * *
318387 CATTCTTTTTTGGATTAGGGACCATAAACATAGACTTCGCATAAGTATAAATAATACTGGTGCTT
1 CATTCTTTTCAGGATTAGGCACCATAAACACAGTCTCCTCATAAGGATAAATGATATTGATGCTT
* * * * * * * *
318452 TGGTTTCGCAAGAAAAGC-TTTCTTCCCACCAATTTTT-ATAATGTCTAAGTTCGTGCCTC--AA
66 TGGTTTTGCAAGAAAAGCTTTTCTTTCAACC-GTTTTTGTTAA-ATCAAAGTT--TACCTCTTAA
* * * * **
318513 ATGAGACAAACATGGAT--TCTAGTAA-TGATCTT
127 ATAAGATAAACATGAATAGTC-A--AACTAATCCC
* * * *
318545 CATTCATTTT--GTGATT-GAGCACTATAAACACATTCTCCTCATTAGGGTAAATGATATTGATG
1 CATTC-TTTTCAG-GATTAG-GCACCATAAACACAGTCTCCTCATAAGGATAAATGATATTGATG
* ** * * * *
318607 ATTTTCTTTTGCATGGAAA--TATTTCATTTGC--CC-TATTTTCCTTAAAATCAAAGTCTATCC
63 CTTTGGTTTTGCAAGAAAAGCT-TTTC-TTT-CAACCGT-TTTT-GTT-AAATCAAAGTTTA-CC
* * * ** * *
318667 -CATAAATAAGGTAAGCATTG-ATTCTCGTAAC-AATCTC
121 TCTTAAATAAGATAAACA-TGAATAGTC-AAACTAATCCC
** * * * * * * * * *
318704 CATTCTTTTCAAAATTGGGAACCAAAAACACAATC-CCTTCATTAGAATACATGACACTGATGCT
1 CATTCTTTTCAGGATTAGGCACCATAAACACAGTCTCC-TCATAAGGATAAATGATATTGATGCT
* * * ** *
318768 TTGGTGTTACAAGAAAAGCTTTTCTTTCAACCATTTTTGTTAGAATCAAAGTTTGTCTCTTCAAT
65 TTGGTTTTGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGTTA-AATCAAAGTTTACCTCTTAAAT
* ** * *
318833 AAGACAAACATGAACCGTCATACTAATCTC
129 AAGATAAACATGAATAGTCAAACTAATCCC
* * * * * * *
318863 CATTTTTTTCAGCATTAGGCACCATAAACATAGTCTTCTTATAAGGATACACGATATTGATGCTT
1 CATTCTTTTCAGGATTAGGCACCATAAACACAGTCTCCTCATAAGGATAAATGATATTGATGCTT
* * * ** * * * *
318928 TGGTTTTGCAAGAAAGGC-TTTCTTCCCATCAATTTTT-ATAATGTCTAAGTTTGTGCCTC--AA
66 TGGTTTTGCAAGAAAAGCTTTTCTT-TCAACCGTTTTTGTTAA-ATCAAAG-TT-TACCTCTTAA
* * * **
318989 ATAAGATAAACAAGGAT--TCTAGTAA-TGATCTT
127 ATAAGATAAACATGAATAGTC-A--AACTAATCCC
* * *
319021 CATTCATTTT--GTGATTAGGCACTATAAACACATTCTCCTCATTATGG-TAAATGATATTGATG
1 CATTC-TTTTCAG-GATTAGGCACCATAAACACAGTCTCCTCA-TAAGGATAAATGATATTGATG
* ** ** * ** *
319083 ATTTCCTTTTGCCTGGAAATATTTTCTTTGC--CC-TATTTTCCTTAAAATCAAA-TTTCACCTC
63 CTTTGGTTTTGCAAGAAAAGCTTTTCTTT-CAACCGT-TTTT-GTT-AAATCAAAGTTT-ACCTC
* * ** * * * *
319144 CTAAATATGGCAAGCATTG-AT-GCTCGTAAC-AGTCTC
123 TTAAATAAGATAAACA-TGAATAG-TC-AAACTAATCCC
* * * * * * *
319180 CAATCTTTTCAAGATT-GGAAAC-TAATAACACATTC-CCTTCATTAGGATACAA-GAAATTGAT
1 CATTCTTTTCAGGATTAGGCACCAT-A-AACACAGTCTCC-TCATAAGGATA-AATGATATTGAT
* * * ** * * ** *
319241 GCTTTGGTGTCGAAAGAAAAGCTTTTCTTTCAATAGTTTTTGATAGAATAAAAGTTTGTCTCTTT
62 GCTTTGGTTTTGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGTTA-AATCAAAGTTTACCTCTTA
* * *
319306 AATAAGATGAACATGAATAGTTATACTAATCCC
126 AATAAGATAAACATGAATAGTCAAACTAATCCC
* * * * * * **
319339 TATTCTTTTC-GAGATTAGGCACCACAAACATAGTACT-CTCTTAAGGATATACGATATTGACAC
1 CATTCTTTTCAG-GATTAGGCACCATAAACACAGT-CTCCTCATAAGGATAAATGATATTGATGC
* * * * * * *
319402 TTTGGTTTCGCAAGAAAGGCTTTT-TTCCAACCAATTTTTG-TAAAGTCTAAGTCCATGCCTC--
64 TTTGGTTTTGCAAGAAAAGCTTTTCTTTCAACC-GTTTTTGTTAAA-TCAAAGT--TTACCTCTT
* * * * * **
319463 AAATGAG-TCAAACATGGAT--TCTAGTATTGATCTT
125 AAATAAGAT-AAACATGAATAGTC-A-AACTAATCCC
* * * ** *
319497 CATTCATTTT--GTGATTAGGCACTATAAACACAATCTCCTCATTACTATAAATGATATTGATGA
1 CATTC-TTTTCAG-GATTAGGCACCATAAACACAGTCTCCTCATAAGGATAAATGATATTGATGC
** * * * * * *
319560 TTTTATTTTGCATGGAAATG-TTTCCTTT--GCCTTATTTTCCTTAAAATCAAAGTTTATCC-CT
64 TTTGGTTTTGCA-AGAAAAGCTTTTCTTTCAACCGT-TTTT-GTT-AAATCAAAGTTTA-CCTCT
* * * ** *
319621 TAAA-AAAAGCAAGCATTG-ATTTTCATAACT-GTCCC
124 TAAATAAGA-TAAACA-TGAATAGTCA-AACTAATCCC
* * * * * * *
319656 CATT-TTTCTCAAG-TTTGGAAACA-AAAAACTTA-T-TCCTTTCATTAGGATACATGATATTGA
1 CATTCTTT-TCAGGATTAGGCACCATAAACAC--AGTCTCC--TCATAAGGATAAATGATATTGA
* * * * ** * ***
319716 CGCTTTAGG-ATTGCAAGAAAAGCTATT-TTTCCACCGTTTTTAATAGAATCAGAGTTTGTGTCT
61 TGCTTT-GGTTTTGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGTTA-AATCAAAGTTTACCTCT
* * *
319779 TAAATAAGACAAACATGAATAGTCATACTAATCTC
124 TAAATAAGATAAACATGAATAGTCAAACTAATCCC
* ** * * * * * ** *
319814 CATTTTTTTCAAAATTAGGAACCACAAACATAGTCTTCTCATAAGGATACACAATATTAATGCTT
1 CATTCTTTTCAGGATTAGGCACCATAAACACAGTCTCCTCATAAGGATAAATGATATTGATGCTT
* ** * * * * * *
319879 TAGTTTCACAACAAAGGC-TTTCTCCTC-ACCAATTTTTG-TAAATTCTAAG-TT-CGTGCCTTA
66 TGGTTTTGCAAGAAAAGCTTTTCT-TTCAACC-GTTTTTGTTAAA-TCAAAGTTTACCT--CTTA
* * *
319939 AATAAG-TCAAACATGGACTCTAGT--AA-TGA-CCTT
126 AATAAGAT-AAACAT-GA--ATAGTCAAACTAATCC-C
* * ** * *
319972 CATTCATTTT--GTGATTAGGCACTATAAACACATTCTTATCATTAGGATAAATGATATTGATGA
1 CATTC-TTTTCAG-GATTAGGCACCATAAACACAGTCTCCTCATAAGGATAAATGATATTGATGC
** * * ** * * *
320035 TTTTATTTTGCATGGAAATATTTGCTTTGC--CC-TATTTTCTTGAAAATCAAAATTTATCC-CT
64 TTTGGTTTTGCAAGAAAAGCTTTTCTTT-CAACCGT-TTTTGTT--AAATCAAAGTTTA-CCTCT
** * *
320096 TAAATAATG-TAAACATTG-ATTCTCGTAAC-AATCTC
124 TAAATAA-GATAAACA-TGAATAGTC-AAACTAATCCC
* * * * * * * ** *
320131 CATTC-TTTCAAGATTGGGAACCAAAAACACAATC-CCTTTATTAGGATGCATGACATTGATGCT
1 CATTCTTTTCAGGATTAGGCACCATAAACACAGTCTCC-TCATAAGGATAAATGATATTGATGCT
* * *
320194 TTGGTGTTGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGTTAGAATCAAAGCTTGA-CTCTTTAA
65 TTGGTTTTGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGTTA-AATCAAAG-TTTACCTCTTAAA
* * *
320258 TCAGATAAACATGAATTGTCATACTAATCCC
128 TAAGATAAACATGAATAGTCAAACTAATCCC
* * * * * * *
320289 CATTTTGTTTTTAGGATTAGGCACCACAAACATAGTCTTCTCATAAGGATACACGATATTGATGC
1 CA--TTCTTTTCAGGATTAGGCACCATAAACACAGTCTCCTCATAAGGATAAATGATATTGATGC
** *
320354 TTTACTTTTGCAAGAAAGGCTTT
64 TTTGGTTTTGCAAGAAAAGCTTT
320377 ATTCCCACCA
Statistics
Matches: 2718, Mismatches: 849, Indels: 654
0.64 0.20 0.15
Matches are distributed among these distances:
155 1 0.00
156 29 0.01
157 128 0.05
158 1011 0.37
159 1190 0.44
160 251 0.09
161 100 0.04
162 8 0.00
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.37
Consensus pattern (158 bp):
CATTCTTTTCAGGATTAGGCACCATAAACACAGTCTCCTCATAAGGATAAATGATATTGATGCTT
TGGTTTTGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGTTAAATCAAAGTTTACCTCTTAAATAA
GATAAACATGAATAGTCAAACTAATCCC
Found at i:317217 original size:476 final size:476
Alignment explanation
Indices: 316199--321122 Score: 6002
Period size: 476 Copynumber: 10.4 Consensus size: 476
316189 CGTTGAGACA
* * * *
316199 CTCCTCAATAGGGTAAACGATATTGATGATTTTCTTTTGCATGAAAATGTTTCCTTTGCCCT-TT
1 CTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCCCTATT
* * * *
316263 TTCTTTAAAATCAAAGTTCATCTCTTAAATAAGGCAAGCATTGATTCTCGTAACAATCTTCATTC
66 TTCCTTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAATCTCCATTC
* * * * *
316328 TTTTCATGATTAGGAACTAAAAACACAATCCCTTCTTTAGGATACATAACATTGATGCTTTGGT-
131 TTTTCAAGATTGGGAACCAAAAACACAATCCCTTCATTAGGATACATGACATTGATGCTTTGGTG
** * * *
316392 TT-CACTAGAAAAGCTTTTCTTTCAACTGTTTTTGTTATAATAAAAGTTTGTCTCTTTAATAAGA
196 TTGCA--AGAAAAGCTTTTCTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTTAATAAGA
* * * *
316456 TAAACATGAATAGTCATACTAATCCCCATTTTTTTCAGGATTAGGCACTATAAACATAGTACTTC
259 CAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCACAAACATAGT-CTTC
* * * *
316521 TTATAAGGATACA-TAGTATTGATGCTTTGGTTTTGCAAGAAAGGCTTTATTCCCACCAATTTTT
323 TCATAAGGATACACGA-TATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTT
* * * * * * * *
316585 ATAATGTCTAAGTTCGTACCTCAAATAAGACAAACATGGATTATACTAATGATCTTCATTTATTT
387 GTAAAGTCTAAGTTCGTGCCTCAAATGAGTCAAACATGGATTCTAGTAATGATCTTCATTCATTT
*
316650 TGTGATTAGGTACTATAAACACATT
452 TGTGATTAGGCACTATAAACACATT
* * *
316675 CTCCGCATTAGGGTAAATGATATTGATGATTTTCTTTTGCATGGAAATGTTTTCTTTG-CCTATT
1 CTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCCCTATT
* *
316739 TTCCTTAAAATCAAAGTTTATCCCTTAAATAAGGTAAGCATTGATTCTTGTAACAATCTCCATTC
66 TTCCTTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAATCTCCATTC
* * * *
316804 TTTTTAGGATTGGGAACCAAAAACGCAATCCCTTCATTAGGATACAAGACATTGATGCTTTGGTG
131 TTTTCAAGATTGGGAACCAAAAACACAATCCCTTCATTAGGATACATGACATTGATGCTTTGGTG
* * ** *
316869 TTGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGTTAGAATCAAAGTTTACCTCTTTAATAAGATA
196 TTGCAAGAAAAGCTTTTCTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTTAATAAGACA
* *
316934 AATATGAATAGTCAAACTAATCCCCATTCTTTTCAGGATTAGGCACCACAAACATAGTCTTCTCA
261 AACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCACAAACATAGTCTTCTCA
* * * *
316999 TAAGGATAAATGATATTGATGCTTTAGTTTTGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAA
326 TAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAA
* * ** *
317064 AGTCTAAGTCCATGCCTTGAATGAGTCACACATGGATTCTAGTAATGATCTTCATTCATTTTGTG
391 AGTCTAAGTTCGTGCCTCAAATGAGTCAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTG
* * *
317129 ATTAGGTACTATAAATAGATT
456 ATTAGGCACTATAAACACATT
** * * * *
317150 CTCCTCATTACTATAAAAGATATTGATGATTTTATTTTGCATGGAAATGTTTCCTTTACCTTATT
1 CTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCCCTATT
* * * * * *
317215 TTCATTAAAATCAAAGTTTATCCCTTAAAAAAGGCAAGCAATGATTCTTGTAACAATCCCCATTT
66 TTCCTTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAATCTCCATTC
* * * *
317280 TTTTCAAGATTGGGAACCAAAAACATATTCCCTTCATTAGGATACATTACATTTATGCTTTGG-G
131 TTTTCAAGATTGGGAACCAAAAACACAATCCCTTCATTAGGATACATGACATTGATGCTTTGGTG
* * * * * * * **
317344 ATCGTAAGAAAAGCTATTCTTTCCATCATTTTTGATAGAATCAATGTTTATCTCTAAAATAAGAC
196 -TTGCAAGAAAAGCTTTTCTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTTAATAAGAC
* * * *
317409 AAACATGAATAGCCACACTAATCCTCATTCTTTTCAGGATTAGGCATCACAAACATAGTCTTCTC
260 AAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCACAAACATAGTCTTCTC
* *
317474 ATAAGGATACACGATATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTCCCACCTATTTTTGTA
325 ATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTA
* *
317539 AAGTCTAAGTTTGTGTCTCAAATGAGTCAAACATGGATTCTAGTAATGATCTTCATTCATTTTGT
390 AAGTCTAAGTTCGTGCCTCAAATGAGTCAAACATGGATTCTAGTAATGATCTTCATTCATTTTGT
* *
317604 GATTAGACACAATAAACACATT
455 GATTAGGCACTATAAACACATT
* * * * *
317626 GTCCTTATTAGGATAAATGATATTGATGATTTTTTTTTGCATGGAAATCTTTTCTTTGCCCTATT
1 CTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCCCTATT
* * ** * * *
317691 TTCCTTAAAATCAAAATTCATCCCCAAAATATGACAAGCATCGATTCTCGTAACAATCTCCATTC
66 TTCCTTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAATCTCCATT-
* * * * ** * *
317756 CTTTT-AGGATTGGGAACTAAGAACACATTCCCTTCATTAATATACATGTCATTGATGCTTTTGT
130 CTTTTCAAGATTGGGAACCAAAAACACAATCCCTTCATTAGGATACATGACATTGATGCTTTGGT
* * * * *
317820 GTCAG-AAGAAAAGTTTTTCTTCCAACCATTTTTGATGGAATCAATA-TTTGTCTCTTTAGTAAG
195 GT-TGCAAGAAAAGCTTTTCTTTCAACCATTTTTGATAGAATCAA-AGTTTGTCTCTTTAATAAG
* * * * * *
317883 ACAAACGTGAATAGTCATAC-ATATGCTCATTCTTTTCAGGATTAGGCAACACAAACACAGTTTT
258 ACAAACATGAATAGTCATACTA-ATCCCCATTCTTTTCAGGATTAGGCACCACAAACATAGTCTT
* * * *
317947 CTCATTAA-GATAGATGATATTGATGCTTTGGTTTCGAAAGAAAGGCTTTCTTCCCTCCAATTTT
322 CTCA-TAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTT
* ** * *
318011 TGTAAAGTCGAAGTTTATGCCTCAAATGAGTCAAATATGGATTCTAGTAATGATCTTCATCCATT
386 TGTAAAGTCTAAGTTCGTGCCTCAAATGAGTCAAACATGGATTCTAGTAATGATCTTCATTCATT
* *
318076 TTGTGATTAGACACAATAAACACATT
451 TTGTGATTAGGCACTATAAACACATT
* * * *
318102 CTCTTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATATTTTCTTTACCCTATT
1 CTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCCCTATT
* * * * ** * * *
318167 TTCCTTAAAATCAAAATTCATCCTTTAAATATGATAAGCATCGATTCTCGTAACAGTCTCCATCC
66 TTCCTTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAATCTCCATTC
* * * * ** * * * * * *
318232 CTCTCAAGCTTGGGAACCAAGAACACTTTACCTTCAGTAAGACACATGTCCATTGATGCTTTTGT
131 TTTTCAAGATTGGGAACCAAAAACACAATCCCTTCATTAGGATACATG-ACATTGATGCTTTGGT
*** * * *
318297 GCCACAAGAAAAGCTTTTCTTCCAACCATTTTTGATAGAATCATTA-TTTATCTCTTTAGA-AAG
195 GTTGCAAGAAAAGCTTTTCTTTCAACCATTTTTGATAGAATCA-AAGTTTGTCTCTTTA-ATAAG
** ** * * *
318360 ACAAATGTGAATAGTCATACTAATCCCCATTCTTTTTTGGATTAGGGACCATAAACATAGACTTC
258 ACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCACAAACATAGTCTTC
* * * ** * * * *
318425 GCATAAGTATAAATAATACTGGTGCTTTGGTTTCGCAAGAAAAGCTTTCTTCCCACCAATTTTTA
323 TCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTG
* *
318490 TAATGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTT
388 TAAAGTCTAAGTTCGTGCCTCAAATGAGTCAAACATGGATTCTAGTAATGATCTTCATTCATTTT
318555 GTGATT-GAGCACTATAAACACATT
453 GTGATTAG-GCACTATAAACACATT
* * *
318579 CTCCTCATTAGGGTAAATGATATTGATGATTTTCTTTTGCATGGAAATATTTCATTTGCCCTATT
1 CTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCCCTATT
* * *
318644 TTCCTTAAAATCAAAGTCTATCCCATAAATAAGGTAAGCATTGATTCTCGTAACAATCTCCATTC
66 TTCCTTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAATCTCCATTC
* * *
318709 TTTTCAAAATTGGGAACCAAAAACACAATCCCTTCATTAGAATACATGACACTGATGCTTTGGTG
131 TTTTCAAGATTGGGAACCAAAAACACAATCCCTTCATTAGGATACATGACATTGATGCTTTGGTG
* * *
318774 TTACAAGAAAAGCTTTTCTTTCAACCATTTTTGTTAGAATCAAAGTTTGTCTCTTCAATAAGACA
196 TTGCAAGAAAAGCTTTTCTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTTAATAAGACA
** * * * * *
318839 AACATGAACCGTCATACTAATCTCCATTTTTTTCAGCATTAGGCACCATAAACATAGTCTTCTTA
261 AACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCACAAACATAGTCTTCTCA
* * *
318904 TAAGGATACACGATATTGATGCTTTGGTTTTGCAAGAAAGGCTTTCTTCCCATCAATTTTTATAA
326 TAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAA
* * * *
318969 TGTCTAAGTTTGTGCCTCAAATAAGAT-AAACAAGGATTCTAGTAATGATCTTCATTCATTTTGT
391 AGTCTAAGTTCGTGCCTCAAATGAG-TCAAACATGGATTCTAGTAATGATCTTCATTCATTTTGT
319033 GATTAGGCACTATAAACACATT
455 GATTAGGCACTATAAACACATT
* * * *
319055 CTCCTCATTATGG-TAAATGATATTGATGATTTCCTTTTGCCTGGAAATATTTTCTTTGCCCTAT
1 CTCCTCATTA-GGATAAATGATATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCCCTAT
* * * *
319119 TTTCCTTAAAATCAAA-TTTCA-CCTCCTAAATATGGCAAGCATTGATGCTCGTAACAGTCTCCA
65 TTTCCTTAAAATCAAAGTTT-ATCC-CTTAAATAAGGCAAGCATTGATTCTCGTAACAATCTCCA
* * * * * * *
319182 ATCTTTTCAAGATTGGAAACTAATAACACATTCCCTTCATTAGGATACAAGAAATTGATGCTTTG
128 TTCTTTTCAAGATTGGGAACCAAAAACACAATCCCTTCATTAGGATACATGACATTGATGCTTTG
* * * *
319247 GTGTCGAAAGAAAAGCTTTTCTTTCAA-TAGTTTTTGATAGAATAAAAGTTTGTCTCTTTAATAA
193 GTGTTGCAAGAAAAGCTTTTCTTTCAACCA-TTTTTGATAGAATCAAAGTTTGTCTCTTTAATAA
** * *
319311 GATGAACATGAATAGTTATACTAATCCCTATTCTTTTC-GAGATTAGGCACCACAAACATAGTAC
257 GACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAG-GATTAGGCACCACAAACATAGT-C
* * ** * *
319375 -TCTCTTAAGGATATACGATATTGACACTTTGGTTTCGCAAGAAAGGCTTTTTTCCAACCAATTT
320 TTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTT
* * *
319439 TTGTAAAGTCTAAGTCCATGCCTCAAATGAGTCAAACATGGATTCTAGTATTGATCTTCATTCAT
385 TTGTAAAGTCTAAGTTCGTGCCTCAAATGAGTCAAACATGGATTCTAGTAATGATCTTCATTCAT
*
319504 TTTGTGATTAGGCACTATAAACACAAT
450 TTTGTGATTAGGCACTATAAACACATT
** * *
319531 CTCCTCATTACTATAAATGATATTGATGATTTTATTTTGCATGGAAATGTTTCCTTTGCCTTATT
1 CTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCCCTATT
* * * * ** *
319596 TTCCTTAAAATCAAAGTTTATCCCTTAAAAAAAGCAAGCATTGATTTTCATAACTGTCCCCATT-
66 TTCCTTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAATCTCCATTC
* * * ** * * * *
319660 TTTCTCAAGTTTGGAAACAAAAAACTTATTCCTTTCATTAGGATACATGATATTGACGCTTTAGG
131 TTT-TCAAGATTGGGAACCAAAAACACAATCCCTTCATTAGGATACATGACATTGATGCTTT-GG
* * * * * * * *
319725 -ATTGCAAGAAAAGCTATT-TTTCCACCGTTTTTAATAGAATCAGAGTTTGTGTCTTAAATAAGA
194 TGTTGCAAGAAAAGCTTTTCTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTTAATAAGA
* * ** *
319788 CAAACATGAATAGTCATACTAATCTCCATTTTTTTCAAAATTAGGAACCACAAACATAGTCTTCT
259 CAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCACAAACATAGTCTTCT
* * * * *
319853 CATAAGGATACACAATATTAATGCTTTAGTTTCACAACAAAGGCTTTC-TCCTCACCAATTTTTG
324 CATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCC-CACCAATTTTTG
* * * * *
319917 TAAATTCTAAGTTCGTGCCTTAAATAAGTCAAACATGGACTCTAGTAATGACCTTCATTCATTTT
388 TAAAGTCTAAGTTCGTGCCTCAAATGAGTCAAACATGGATTCTAGTAATGATCTTCATTCATTTT
319982 GTGATTAGGCACTATAAACACATT
453 GTGATTAGGCACTATAAACACATT
** * * *
320006 CTTATCATTAGGATAAATGATATTGATGATTTTATTTTGCATGGAAATATTTGCTTTGCCCTATT
1 CTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCCCTATT
* * * *
320071 TT-CTTGAAAATCAAAATTTATCCCTTAAATAATGTAAACATTGATTCTCGTAACAATCTCCATT
66 TTCCTT-AAAATCAAAGTTTATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAATCTCCATT
* *
320135 C-TTTCAAGATTGGGAACCAAAAACACAATCCCTTTATTAGGATGCATGACATTGATGCTTTGGT
130 CTTTTCAAGATTGGGAACCAAAAACACAATCCCTTCATTAGGATACATGACATTGATGCTTTGGT
* * * * * *
320199 GTTGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGTTAGAATCAAAGCTTGACTCTTTAATCAGAT
195 GTTGCAAGAAAAGCTTTTCTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTTAATAAGAC
* * *
320264 AAACATGAATTGTCATACTAATCCCCATTTTGTTTTTAGGATTAGGCACCACAAACATAGTCTTC
260 AAACATGAATAGTCATACTAATCCCCA--TTCTTTTCAGGATTAGGCACCACAAACATAGTCTTC
** * *
320329 TCATAAGGATACACGATATTGATGCTTTACTTTTGCAAGAAAGGCTTTATTCCCACCAATTTTTG
323 TCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTG
* *
320394 TAAAGTCTAAGTCCGTGCCTCGAATGAGTCAAACATGGATTCTAGTAATGATCTTCATTCATTTT
388 TAAAGTCTAAGTTCGTGCCTCAAATGAGTCAAACATGGATTCTAGTAATGATCTTCATTCATTTT
*
320459 GTGATTAGGCACTATAAACAGATT
453 GTGATTAGGCACTATAAACACATT
* ** * * * * *
320483 CTCCTCGTTACTATAAATGATATTGATGAATTTATTGTGCATGGAAATGTTTCCTTTACCTTATT
1 CTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCCCTATT
* * * * *
320548 TTCCTTAAAATCAAAGCTCATCCTTTAAAAAAGGCAAGCATTGATTCTCGTAACAGTC-CCTATT
66 TTCCTTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAATCTCC-ATT
* *
320612 TTTTTCAAGATTGGGAACC-AAAA-AC-A----TTCATTAGGATACATGACATTGATGCTTT-GA
130 CTTTTCAAGATTGGGAACCAAAAACACAATCCCTTCATTAGGATACATGACATTGATGCTTTGGT
* * * * **
320669 GAT-CACATGAAAAGCTATTCTTTCCACCATTTTTGATAGAATCAATGTTTGTCTCTAAAATAAG
195 GTTGCA-A-GAAAAGCTTTTCTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTTAATAAG
* * *
320733 ACATACATGAATAGTCATACTAATCCCCATTCTTCTCAAGATTAGGCACCACAAAACATAGTCTT
258 ACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCAC-AAACATAGTCTT
* ** * ** * *
320798 CTCATAAGGGTACACGATATTGACACTTTGCTTTCATAAGAAAGGCTTTCTTCCCACTAGTTTTT
322 CTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTT
* * * *
320863 GTAAAGTCTAAG-TCTTTGCCTAAAATAAGTCAAACATGGATTCTAGTAATGATCTGCATTCATT
387 GTAAAGTCTAAGTTC-GTGCCTCAAATGAGTCAAACATGGATTCTAGTAATGATCTTCATTCATT
* * *
320927 TTGTGATTAGACACAACAAACACATT
451 TTGTGATTAGGCACTATAAACACATT
* * * * *
320953 -TCCTCATTAGGATAAATGATATTCATCATTTTCTTTTGCATGGAAATCTTTTCTTTACCCTATT
1 CTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCCCTATT
* * *
321017 TTCCTTAAAATCAAAATTTATCCCTTAAATAAGGTAAACATTGATTCTCGTAACAATCTCCATTC
66 TTCCTTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAATCTCCATTC
321082 TTTTCAAGATTGGGAACCAAAAACACAATCCCTTCATTAGG
131 TTTTCAAGATTGGGAACCAAAAACACAATCCCTTCATTAGG
321123 CACTATAAAT
Statistics
Matches: 3826, Mismatches: 560, Indels: 124
0.85 0.12 0.03
Matches are distributed among these distances:
469 146 0.04
470 155 0.04
471 101 0.03
472 1 0.00
473 2 0.00
474 70 0.02
475 596 0.16
476 2036 0.53
477 693 0.18
478 26 0.01
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.37
Consensus pattern (476 bp):
CTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTGCCCTATT
TTCCTTAAAATCAAAGTTTATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAATCTCCATTC
TTTTCAAGATTGGGAACCAAAAACACAATCCCTTCATTAGGATACATGACATTGATGCTTTGGTG
TTGCAAGAAAAGCTTTTCTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTTAATAAGACA
AACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCACAAACATAGTCTTCTCA
TAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAA
AGTCTAAGTTCGTGCCTCAAATGAGTCAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTG
ATTAGGCACTATAAACACATT
Found at i:321427 original size:321 final size:320
Alignment explanation
Indices: 320835--321427 Score: 821
Period size: 321 Copynumber: 1.9 Consensus size: 320
320825 TTGCTTTCAT
* * * * * *
320835 AAGAAAGGCTTTCTTCCCACTAGTTTTTGTAAAGTCTAAGTCTTTGCCTAAAATAAGTCAAACAT
1 AAGAAAAGCTTTCTTCCCACCAATTTTTATAAAGTCTAAGTCTGTGCCTAAAATAAGACAAACAT
*
320900 GGATTCTAGTAATGATCTGCATTCATTTTGTGATTAGACACAACAAACACATTTCCTCATTAGGA
66 GGATTCTAGTAATGATCTGCATTCATTTTGTGATTAGACACAACAAACACATTTCCTCATTAGCA
* * * * *
320965 TAAATGATATTCATCATTTTCTTTTGCATGGAAATCTTTTCTTTACCCTATTTTCCTTAAAATCA
131 TAAATGACATTCATCAATTTATTTTGCATGGAAATCTTTCCATTACCCTATTTTCCTTAAAATCA
* * * *
321030 AAATTTATCCCTTAAATAAGGTAAACATTGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGG
196 AAATTCATCCCTTAAAAAAGGCAAACATTGATTCTCGTAACAATCCCCATTCTTTTCAAGATTGG
*
321095 GAACCAAAAACACAATCCCTTCATTAGGCACTATAAATAATACTGGTGCTTTGGTTTCGC
261 GAACAAAAAACACAATCCCTTCATTAGGCACTATAAATAATACTGGTGCTTTGGTTTCGC
* * *
321155 AAGAAAAGCTTTCTTCCCACCAATTTTTATAATGTCTAAGT-TCGTGCCTCAAATGAGACAAACA
1 AAGAAAAGCTTTCTTCCCACCAATTTTTATAAAGTCTAAGTCT-GTGCCTAAAATAAGACAAACA
* * * * * *
321219 TGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACAGATTCTCCTCCTT-G
65 TGGATTCTAGTAATGATCTGCATTCATTTTGTGATTAGACACAACAAACACATT-TCCTCATTAG
* * * * *
321283 CCATAAATGACATTGATGAATTTATTTTGCTTGGAAATGTTTCCATTACCTTATTTTCCTTAAAA
129 -CATAAATGACATTCATCAATTTATTTTGCATGGAAATCTTTCCATTACCCTATTTTCCTTAAAA
* * * * *
321348 TCAAAGTTCATCCTTTAAAAAAGGCAAGCATTGATTCTCGTAACAGTCCCCATTTTTTTCAAGAT
193 TCAAAATTCATCCCTTAAAAAAGGCAAACATTGATTCTCGTAACAATCCCCATTCTTTTCAAGAT
321413 TGGGAACAAAAAACA
258 TGGGAACAAAAAACA
321428 ATCATTAGGA
Statistics
Matches: 234, Mismatches: 36, Indels: 5
0.85 0.13 0.02
Matches are distributed among these distances:
319 1 0.00
320 103 0.44
321 130 0.56
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.36
Consensus pattern (320 bp):
AAGAAAAGCTTTCTTCCCACCAATTTTTATAAAGTCTAAGTCTGTGCCTAAAATAAGACAAACAT
GGATTCTAGTAATGATCTGCATTCATTTTGTGATTAGACACAACAAACACATTTCCTCATTAGCA
TAAATGACATTCATCAATTTATTTTGCATGGAAATCTTTCCATTACCCTATTTTCCTTAAAATCA
AAATTCATCCCTTAAAAAAGGCAAACATTGATTCTCGTAACAATCCCCATTCTTTTCAAGATTGG
GAACAAAAAACACAATCCCTTCATTAGGCACTATAAATAATACTGGTGCTTTGGTTTCGC
Found at i:321731 original size:790 final size:791
Alignment explanation
Indices: 320363--321913 Score: 2748
Period size: 790 Copynumber: 2.0 Consensus size: 791
320353 CTTTACTTTT
* * * *
320363 GCAAGAAAGGCTTTATTCCCACCAATTTTTGTAAAGTCTAAGTCCGTGCCTCGAATGAGTCAAAC
1 GCAAGAAAAGCTTTATTCCCACCAATTTTTATAAAGTCTAAGTCCGTGCCTCAAATGAGACAAAC
*
320428 ATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACAGATTCTCCTCGTTA
66 ATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACAGATTCTCCTCCTTA
* * *
320493 CTATAAATGATATTGATGAATTTATTGTGCATGGAAATGTTTCCTTTACCTTATTTTCCTTAAAA
131 CCATAAATGACATTGATGAATTTATTGTGCATGGAAATGTTTCCATTACCTTATTTTCCTTAAAA
*
320558 TCAAAGCTCATCCTTTAAAAAAGGCAAGCATTGATTCTCGTAACAGTCCCTATTTTTTTCAAGAT
196 TCAAAGCTCATCCTTTAAAAAAGGCAAGCATTGATTCTCGTAACAGTCCCCATTTTTTTCAAGAT
* *
320623 TGGGAACCAAAAACATTCATTAGGATACATGACATTGATGCTTTGAGATCACATGAAAAGCTATT
261 TGGGAACAAAAAACAATCATTAGGATACATGACATTGATGCTTTGAGATCACATGAAAAGCTATT
* *
320688 CTTTCCACCATTTTTGATAGAATCAATGTTTGTCTCTAAAATAAGACATACATGAATAGTCATAC
326 CTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTAAAATAAGACAAACATGAATAGTCATAC
*
320753 TAATCCCCATTCTTCTCAAGATTAGGCACCACAAAACATAGTCTTCTCATAAGGGTACACGATAT
391 TAATCCCCATTCTTCTCAAGAGTAGGCACCACAAAACATAGTCTTCTCATAAGGGTACACGATAT
* * * *
320818 TGACACTTTGCTTTCATAAGAAAGGCTTTCTTCCCACTAGTTTTTGTAAAGTCTAAGTCTTTGCC
456 TGACACTTTGCATTCATAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTCTGTGCC
*
320883 TAAAATAAGTCAAACATGGATTCTAGTAATGATCTGCATTCATTTTGTGATTAGACACAACAAAC
521 TAAAATAAGTCAAACATGGATTCTAGTAATGATCTGCATTCATTTTGTGATCAGACACAACAAAC
320948 ACA-TTTCCTCATTAGGATAAATGATATTCATCATTTTCTTTTGCATGGAAATCTTTTCTTTACC
586 ACATTTTCCTCATTAGGATAAATGATATTCATCATTTTCTTTTGCATGGAAATCTTTTCTTTACC
321012 CTATTTTCCTTAAAATCAAAATTTATCCCTTAAATAAGGTAAACATTGATTCTCGTAACAATCTC
651 CTATTTTCCTTAAAATCAAAATTTATCCCTTAAATAAGGTAAACATTGATTCTCGTAACAATCTC
321077 CATTCTTTTCAAGATTGGGAACCAAAAACACAATCCCTTCATTAGGCACTATAAATAATACTGGT
716 CATTCTTTTCAAGATTGGGAACCAAAAACACAATCCCTTCATTAGGCACTATAAATAATACTGGT
321142 GCTTTGGTTTC
781 GCTTTGGTTTC
* * *
321153 GCAAGAAAAGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTCGTGCCTCAAATGAGACAAAC
1 GCAAGAAAAGCTTTATTCCCACCAATTTTTATAAAGTCTAAGTCCGTGCCTCAAATGAGACAAAC
*
321218 ATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACAGATTCTCCTCCTTG
66 ATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACAGATTCTCCTCCTTA
* *
321283 CCATAAATGACATTGATGAATTTATTTTGCTTGGAAATGTTTCCATTACCTTATTTTCCTTAAAA
131 CCATAAATGACATTGATGAATTTATTGTGCATGGAAATGTTTCCATTACCTTATTTTCCTTAAAA
*
321348 TCAAAGTTCATCCTTTAAAAAAGGCAAGCATTGATTCTCGTAACAGTCCCCATTTTTTTCAAGAT
196 TCAAAGCTCATCCTTTAAAAAAGGCAAGCATTGATTCTCGTAACAGTCCCCATTTTTTTCAAGAT
321413 TGGGAACAAAAAACAATCATTAGGATACATGACATTGATGCTTTGAGATCACATGAAAAGCTATT
261 TGGGAACAAAAAACAATCATTAGGATACATGACATTGATGCTTTGAGATCACATGAAAAGCTATT
*
321478 CTTTCCATCATTTTTGATAGAATCAAAGTTTGTCTCTAAAATAAGACAAACATGAATAGTCATAC
326 CTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTAAAATAAGACAAACATGAATAGTCATAC
*
321543 TAATCCCCATTCTTCTCAAGAGTAGGCACCA-TAAACATAGTCTTCTCAT-AGGGATACACGATA
391 TAATCCCCATTCTTCTCAAGAGTAGGCACCACAAAACATAGTCTTCTCATAAGGG-TACACGATA
* *
321606 TTGACGCTTTGGATTCATAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTCTGTGC
455 TTGACACTTTGCATTCATAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTCTGTGC
* * **
321671 CTCAAATAAGTCAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTAGATCAGACACAGTAA
520 CTAAAATAAGTCAAACATGGATTCTAGTAATGATCTGCATTCATTTTGT-GATCAGACACAACAA
*
321736 ACACATTTTCCTCATTAGGATAAATGATATTCATCATTTTCTTTTGCATGGAAATCTTTTCTTTG
584 ACACATTTTCCTCATTAGGATAAATGATATTCATCATTTTCTTTTGCATGGAAATCTTTTCTTTA
321801 CCCTATTTTCCTTAAAATCAAAATTTATCCCTTAAATAAGGTAAACATTGATTCTCGTAACAATC
649 CCCTATTTTCCTTAAAATCAAAATTTATCCCTTAAATAAGGTAAACATTGATTCTCGTAACAATC
321866 TCCATTCTTTTCAAGATTGGGAACCAAAAACACAATCCCTTCATTAGG
714 TCCATTCTTTTCAAGATTGGGAACCAAAAACACAATCCCTTCATTAGG
321914 ATGCATGACA
Statistics
Matches: 723, Mismatches: 35, Indels: 5
0.95 0.05 0.01
Matches are distributed among these distances:
788 4 0.01
789 132 0.18
790 416 0.58
791 171 0.24
ACGTcount: A:0.33, C:0.19, G:0.13, T:0.35
Consensus pattern (791 bp):
GCAAGAAAAGCTTTATTCCCACCAATTTTTATAAAGTCTAAGTCCGTGCCTCAAATGAGACAAAC
ATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACAGATTCTCCTCCTTA
CCATAAATGACATTGATGAATTTATTGTGCATGGAAATGTTTCCATTACCTTATTTTCCTTAAAA
TCAAAGCTCATCCTTTAAAAAAGGCAAGCATTGATTCTCGTAACAGTCCCCATTTTTTTCAAGAT
TGGGAACAAAAAACAATCATTAGGATACATGACATTGATGCTTTGAGATCACATGAAAAGCTATT
CTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTAAAATAAGACAAACATGAATAGTCATAC
TAATCCCCATTCTTCTCAAGAGTAGGCACCACAAAACATAGTCTTCTCATAAGGGTACACGATAT
TGACACTTTGCATTCATAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTCTGTGCC
TAAAATAAGTCAAACATGGATTCTAGTAATGATCTGCATTCATTTTGTGATCAGACACAACAAAC
ACATTTTCCTCATTAGGATAAATGATATTCATCATTTTCTTTTGCATGGAAATCTTTTCTTTACC
CTATTTTCCTTAAAATCAAAATTTATCCCTTAAATAAGGTAAACATTGATTCTCGTAACAATCTC
CATTCTTTTCAAGATTGGGAACCAAAAACACAATCCCTTCATTAGGCACTATAAATAATACTGGT
GCTTTGGTTTC
Found at i:324403 original size:475 final size:473
Alignment explanation
Indices: 322723--326239 Score: 3254
Period size: 475 Copynumber: 7.5 Consensus size: 473
322713 ATTTTTTTTT
* * * * * * *
322723 GCATCGATTCTCCTAATAGTCTCCATTCCTTTCAAAATTAGGAACCAAGAACATATTCCCTTCAG
1 GCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACATATTCCCTTCAT
* * * * * * *
322788 TAAGATACATGTCATTGATGCTTTTGTGCCACAAGAAAAGCTTTTCTTTCAACTATTTTTGAAAG
66 TAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCA-TTTTGATAG
** * * * *
322853 AATCATTGTTTGTCTCTTTAGTAAGACAAACGTGAATAGTAATACTAATCCCCATTCTTCTCAAG
130 AATCAAAGTTTGTCTCTTTAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAAG
* * * *
322918 ATCAGGCACCATAAACATAGTCGTCTTATAAGGATACACGATATTGACGCTTTGGATTCGTAAGA
195 ATTAGGCACCATAAACATAGTCTTCTTATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGA
* * *
322983 AAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTCTGTGCCTCAAATGAGTCAAACATGGAT
260 AAGGCTTTCCTCCCTCCAATTTTTGTAAAGTCTAAGT-TCTGCCTCAAATGAGTCAAACATGGAT
* * **
323048 TCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACAATCTCCTCATTATCATAA
324 TCTAGTAATGATCTTCATTCATTTTATGATTAGGCACTATAAACACATTCTCCTCATTAGGATAA
* * *
323113 TTGATATTGATGATTTTATTTTGCA-TGAAAATGTTTCTTTTGCCCTATTTTTCTTAAAATCAAA
389 ATGATATTGATGATTTTATTTTGCATTG-AAATCTTTC-TTTGCCCTATTTTCCTTAAAATCAAA
* *
323177 GTTCATCCCTTAAAAAAGGCAA
452 GTTCATCCCTTAAATAAGACAA
* * * * * *
323199 GCATTGATTCTCCTAATAGTCCCCATTCTTTTTAAGATTGGGAACCAAAAACATATTCCCGTCAT
1 GCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACATATTCCCTTCAT
* * * * * *
323264 TAGGATACATGATATTGACGCTTTGG-GATCACCAGAAAAGCTATTCTTTCCACCATTTTTGATA
66 TAGGATACATGACATTGATGCTTTGGTG-TCGCAAGAAAAGCTTTTCTTTCAACCA-TTTTGATA
* * * *
323328 GAATCAAAGCTTGTGT-TTTAAGTAAGACAAACATGAATAGTCATACTAATCTCAATT-TTTTCA
129 GAATCAAAGTTTGTCTCTTTAA-TAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCA
* * ** *
323391 AGATTAGGCACCACAAACATAGTCTTCTCATAAGGATACAC-ATTATTGGTGCTTTGGTTTCACA
193 AGATTAGGCACCATAAACATAGTCTTCTTATAAGGATACACGA-TATTGACGCTTTGGTTTCGCA
* * * *
323455 AGAAAGGCTTT-CTCCCCTCC-ATTTTT-T--ATTCTTAGTCCGTACCTCAAATGAGTCAAACAT
257 AGAAAGGCTTTCCT-CCCTCCAATTTTTGTAAAGTCTAAGTTC-TGCCTCAAATGAGTCAAACAT
* * * * * *
323515 GGACTCTAGAAATGATCTTCATTCATTTTATGATTAGACAATATAAACATATTCTCCTCATTTGG
320 GGATTCTAGTAATGATCTTCATTCATTTTATGATTAGGCACTATAAACACATTCTCCTCATTAGG
* * *
323580 ATAAATGATATTGATGATTTTATTTTG-AATGAAATGTTACCTCCTTTGCCCTATTTTCATTAAA
385 ATAAATGATATTGATGATTTTATTTTGCATTGAAATCTT---T-CTTTGCCCTATTTTCCTTAAA
323644 ATCAAAGTTCATCCCTTAAATAACG-CAA
446 ATCAAAGTTCATCCCTTAAATAA-GACAA
* * *
323672 GCA-CTAATTCTCGTAACAGTC-CCTATTCTTTTCAAGATTGGGAACCAAAAACATATTCCTTTT
1 GCATC-GATTCTCGTAACAGTCTCC-ATTCTTTTCAAGATTGGGAACCAAAAACATATTCCCTTC
* * * * * * * *
323735 ATTAGGATAGATAACATTGATGATTTGG-GATCACAAGAAAAACTATTCTTTCTACCGTTTTTGA
64 ATTAGGATACATGACATTGATGCTTTGGTG-TCGCAAGAAAAGCTTTTCTTTCAACC-ATTTTGA
* * *
323799 TAGAATCAAAGTTTGTTTCTTAAATAAGACAAAC-TAGAATAGTCATACTAATCCTCATTCTTTT
127 TAGAATCAAAGTTTGTCTCTTTAATAAGACAAACAT-GAATAGTCATACTAATCCCCATTCTTTT
* * * ** * * * * *
323863 CAGGATTAGGCACCATAAAGATAGTATTCTCGTTATGATAGATGATATTGATGCTTTGGTTTCGC
191 CAAGATTAGGCACCATAAACATAGTCTTCTTATAAGGATACACGATATTGACGCTTTGGTTTCGC
* *
323928 AAGAAAGGCTTTCCTCCCTCCAAGTTTTGTAAAGTCTAAGTGTCTGCCTCAAATAAGTCAAACAT
256 AAGAAAGGCTTTCCTCCCTCCAATTTTTGTAAAGTCTAAGT-TCTGCCTCAAATGAGTCAAACAT
* *
323993 GGATTCTAGTAATGATCTTCATTCATTTAATGATTAGACA-TAATAAACACATTCTCCTCATTAG
320 GGATTCTAGTAATGATCTTCATTCATTTTATGATTAGGCACT-ATAAACACATTCTCCTCATTAG
* * **
324057 GATATAA-GATATTGATGATTTTTTTTTTGCATTGAAATCCTTTTTTTGCTTTATTTTCCTTAAA
384 GATA-AATGATATTGATGA-TTTTATTTTGCATTGAAAT-CTTTCTTTGCCCTATTTTCCTTAAA
* * *
324121 ATCAAAATTCATCCTTTAAATATGACAA
446 ATCAAAGTTCATCCCTTAAATAAGACAA
* * ** *
324149 GCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACTAAGAATGTATTCCCTCCAT
1 GCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACATATTCCCTTCAT
* * * * *
324214 TAGGATACTTGACATTAATGCTTTGGTGTTGTAAGAAAAGC-TTTCTTTTAACCATTTTGATAGA
66 TAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCATTTTGATAGA
* * * *
324278 ATCAAAGTTTGTCTCTTATAA-AAGACAAATATGAATAGTCATACTAATCCCTAATCTTTTCATG
131 ATCAAAGTTTGTCTCTT-TAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAAG
* * * * * *
324342 ATTTGGCACCATAAACATAGTCTACTTATAAGGGTGCACGATATTGACACTTGGGTTTCGCAAGA
195 ATTAGGCACCATAAACATAGTCTTCTTATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGA
* * * * *
324407 AAGGCTTT-CTTCCTACCAATTTTTATAATGTCTAAGTT-TGTACCTCAAACGAAG-CAAACATC
260 AAGGCTTTCCTCCCT-CCAATTTTTGTAAAGTCTAAGTTCTG--CCTCAAATG-AGTCAAACATG
* * * * *
324469 AATTCTAGTAATGATCTTCATTAATTTTGTGATTAGGCACTATAAACAGATTATCCT-ATTTAGG
321 GATTCTAGTAATGATCTTCATTCATTTTATGATTAGGCACTATAAACACATTCTCCTCA-TTAGG
* * * * * * * *
324533 GTAAATAATATTGATGATTTTCTTTCGCATGGAAATGTTTCCTTTACCTTATTTTCCTTAAAATC
385 ATAAATGATATTGATGATTTTATTTTGCATTGAAATCTTT-CTTTGCCCTATTTTCCTTAAAATC
**
324598 AAAGTTCATCCCATT-AATAAGGGAA
449 AAAGTTCATCCC-TTAAATAAGACAA
* * * * * * *
324623 GCATTGATTCTTAG-AATAGTCTCTATTCTTTTTAAGATTGGGAACCAAAAACACACTCCCTTCA
1 GCATCGATTC-TCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACATATTCCCTTCA
* * * * * * * *
324687 ATAGGATGCTTGACATTGATGCTTTGGTGTTGAAAGAAAAGCTTTTCTTTCAATCGTTTTGGTTA
65 TTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCATTTT-GATA
* *
324752 GAATCAAAGTTTGT-TTTTTAAATAAGACAAAAATGAATAGTCATACTAATCCCCATTC-TTTCA
129 GAATCAAAGTTTGTCTCTTT-AATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCA
* * ** * * ** * * * *
324815 GGATTAGGAACCA-AGAATGTATTC-TCTTCATTAGGATACTTGACATTTAAGCTTTGGTGTCGC
193 AGATTAGGCACCATA-AACATAGTCTTCTT-ATAAGGATACACGATATTGACGCTTTGGTTTCGC
* * * * * * * ** * *** *
324878 AAGAAACGCTTT--T-CTTTCAACCGTTTTGATAGAA-CCAAAGTT-TGTCTCTTATAAAAGACA
256 AAGAAAGGCTTTCCTCCCTCCAA--TTTTTG-TA-AAGTCTAAGTTCTGCCTCAAATGAGTCAAA
* * * * * * * ** * * *
324938 TATGAATAGTC-A-TACTAATC-CCTAATC-TTTTCAGGATTAGGCACCGTAAACATAGTCTACT
317 CATGGAT--TCTAGTAATGATCTTC-ATTCATTTT-ATGATTAGGCACTATAAACACATTCTCCT
* * * * *** * * * * * *
324999 TATAAGGATACATGATATTGATGCTTAGGTTTCGCA-AGAAAGGCTTT-TTTCCCACCAATTT--
378 CATTAGGATAAATGATATTGATGATTTTATTTTGCATTGAAA-TCTTTCTTTGCC-CTATTTTCC
* *
325060 TT---AT-AACG--CA------AGA-AAG----
441 TTAAAATCAAAGTTCATCCCTTAAATAAGACAA
* * * * * * *
325076 GCATTGATTCTCGGAACAATCTCCATTCTTTTCAAGATTGGGAACTAAAAACACATTCCTTTCAA
1 GCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACATATTCCCTTCAT
* * * * *
325141 AAGGATACATGACATTGATGCGTTGGTGTCGCAAGAAATGCTTTTCTTTCAACCGTTTTGGTTAG
66 TAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCATTTT-GATAG
* * * * ** *
325206 AATCAAAGTTTGTCT-TTTCAAGAAAACAAGCATGAATAGTCATACCAATCCTTATTCTTTTCAG
130 AATCAAAGTTTGTCTCTTT-AATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAA
* * * * *
325270 GATTACGCACCATAAACATTGTCTTCTTATAAGGATACACAATATTGATGCTTTGGTTTTGCAAG
194 GATTAGGCACCATAAACATAGTCTTCTTATAAGGATACACGATATTGACGCTTTGGTTTCGCAAG
* * ** * * * *
325335 AAAGGCTTTCTTCCCACCAATTTTCATAATGTCTAAGTTTGTGCCTCAAATGAGACAAACAAGGA
259 AAAGGCTTTCCTCCCTCCAATTTTTGTAAAGTCTAAG-TTCTGCCTCAAATGAGTCAAACATGGA
* * *
325400 TTCTAGTAATGATCTTCATTCATTTTTTGATTAGGCACTATAAACATATTCTCCTCATTAGGGTA
323 TTCTAGTAATGATCTTCATTCATTTTATGATTAGGCACTATAAACACATTCTCCTCATTAGGATA
* * *
325465 AATGATATTGATGATTTTCTTTTGC-GTGAAAATCATTTCTTTGCCCTATTTTCCATAAAATCAA
388 AATGATATTGATGATTTTATTTTGCATTG-AAATC-TTTCTTTGCCCTATTTTCCTTAAAATCAA
* * *
325529 AATTCAACCCTTAAATATGACAA
451 AGTTCATCCCTTAAATAAGACAA
* * * * * * * *
325552 GCATCGATTCTTGTGACAGTCTCCAATGTTTCCAAGATTGGGAACCAATAACACATT-CCTTCAA
1 GCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACATATTCCCTTCAT
* * * ** *
325616 TAGGATACATGACATTGACGCTTTGGTATCGAAAGAAAAGCTTTTCTTTCAACTGTTTTTGTTAG
66 TAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAAC-CATTTTGATAG
* **
325681 AATCAAAGTTTATCTCTTTAATAAGATGAACATGAATA-TCATACTAATCCCCATTCTTTTCAAG
130 AATCAAAGTTTGTCTCTTTAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAAG
* * * *
325745 ATTAAGGCACCACAAACATAGTCTTCTCATAAGAATACACGATATTGACACTTTGGTTTCGCAAG
195 ATT-AGGCACCATAAACATAGTCTTCTTATAAGGATACACGATATTGACGCTTTGGTTTCGCAAG
* * * * *
325810 AAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCAAAGTCCGTGGCTCAAATGAGTCAAACATGGA
259 AAAGGCTTTCCTCCCTCCAATTTTTGTAAAGTCTAAGTTC-TGCCTCAAATGAGTCAAACATGGA
* * * **
325875 TTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACAATCTCTTCATTACTATA
323 TTCTAGTAATGATCTTCATTCATTTTATGATTAGGCACTATAAACACATTCTCCTCATTAGGATA
* *
325940 AATGATATTGATGATTTTATTTTGCATAGAAATGTTTCCTTTGCCCTATTTTCCTTAAAATCAAA
388 AATGATATTGATGATTTTATTTTGCATTGAAATCTTT-CTTTGCCCTATTTTCCTTAAAATCAAA
* * *
326005 GTTTATCCCTTAAAAAAGGCAA
452 GTTCATCCCTTAAATAAGACAA
* * * *
326027 GCATTGATTCTCGTAACAATCCCCATTTTTTTCAAGATTGGGAACC-AAAA-ATA-----TTCAT
1 GCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACATATTCCCTTCAT
* * * * *
326085 TAGGATACATGACATTGATGCTTTGAG-ATCGCATGAAAAGCTATTCTTTCCATCATTTTTGATA
66 TAGGATACATGACATTGATGCTTTG-GTGTCGCAAGAAAAGCTTTTCTTTCAACCA-TTTTGATA
** *
326149 GAATCAAAGTTTGTCTCTAAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTCTCAA
129 GAATCAAAGTTTGTCTCTTTAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAA
*
326214 GATTAGGCACCACAAACATAGTCTTC
194 GATTAGGCACCATAAACATAGTCTTC
326240 ATCATTTTCT
Statistics
Matches: 2475, Mismatches: 455, Indels: 229
0.78 0.14 0.07
Matches are distributed among these distances:
452 2 0.00
453 159 0.06
454 66 0.03
455 11 0.00
456 76 0.03
457 23 0.01
458 6 0.00
459 1 0.00
462 2 0.00
463 2 0.00
464 2 0.00
465 2 0.00
466 3 0.00
467 2 0.00
469 112 0.05
470 39 0.02
471 117 0.05
472 22 0.01
473 274 0.11
474 282 0.11
475 753 0.30
476 272 0.11
477 123 0.05
478 103 0.04
479 12 0.00
480 7 0.00
481 2 0.00
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (473 bp):
GCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACATATTCCCTTCAT
TAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCATTTTGATAGA
ATCAAAGTTTGTCTCTTTAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAAGA
TTAGGCACCATAAACATAGTCTTCTTATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAA
AGGCTTTCCTCCCTCCAATTTTTGTAAAGTCTAAGTTCTGCCTCAAATGAGTCAAACATGGATTC
TAGTAATGATCTTCATTCATTTTATGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAAT
GATATTGATGATTTTATTTTGCATTGAAATCTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTC
ATCCCTTAAATAAGACAA
Found at i:324883 original size:158 final size:156
Alignment explanation
Indices: 324682--324978 Score: 409
Period size: 158 Copynumber: 1.9 Consensus size: 156
324672 AACACACTCC
* * * *
324682 CTTCAATAGGATGCTTGACATTGATGCTTTGGTGTTGAAAGAAAAGCTTTTCTTTCAATCGTTTT
1 CTTCAATAGGATACTTGACATTGAAGCTTTGGTGTCGAAAGAAAAGCTTTTCTTTCAACCGTTTT
* * * * *
324747 GGTTAGAATCAAAGTTTGTTTTTTA-AATAAGACAAAAATGAATAGTCATACTAATCCCCATTC-
66 -GATAGAACCAAAGTTTGTCTCTTATAA-AAGAC--AAATGAATAGTCATACTAATCCCCAATCT
324810 TTTCAGGATTAGGAACCAAGAATGTATTCT
127 TTTCAGGATTAGGAACCAAGAATGTATTCT
* * * *
324840 CTTCATTAGGATACTTGACATTTAAGCTTTGGTGTCGCAAGAAACGCTTTTCTTTCAACCGTTTT
1 CTTCAATAGGATACTTGACATTGAAGCTTTGGTGTCGAAAGAAAAGCTTTTCTTTCAACCGTTTT
* *
324905 GATAGAACCAAAGTTTGTCTCTTATAAAAGACATATGAATAGTCATACTAATCCCTAATCTTTTC
66 GATAGAACCAAAGTTTGTCTCTTATAAAAGACAAATGAATAGTCATACTAATCCCCAATCTTTTC
324970 AGGATTAGG
131 AGGATTAGG
324979 CACCGTAAAC
Statistics
Matches: 122, Mismatches: 15, Indels: 6
0.85 0.10 0.04
Matches are distributed among these distances:
155 25 0.20
156 13 0.11
157 25 0.20
158 59 0.48
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.36
Consensus pattern (156 bp):
CTTCAATAGGATACTTGACATTGAAGCTTTGGTGTCGAAAGAAAAGCTTTTCTTTCAACCGTTTT
GATAGAACCAAAGTTTGTCTCTTATAAAAGACAAATGAATAGTCATACTAATCCCCAATCTTTTC
AGGATTAGGAACCAAGAATGTATTCT
Found at i:325035 original size:156 final size:157
Alignment explanation
Indices: 324697--325046 Score: 397
Period size: 156 Copynumber: 2.2 Consensus size: 157
324687 ATAGGATGCT
* * * *
324697 TGACATTGATGCTTTGGTGTT-GAAAGAAAAGCTTTTCTTTCAATCGTTTTGGTTAGAATCAAAG
1 TGACATTGATGCTTTGGT-TTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTGGATAGAACCAAAG
* * *
324761 TTTGTTTTTTAAATAAGACAAAAATGAATAGTCATACTAATCCCCATTCTTTCAGGATTAGGAAC
65 TTTGTCTCTTAAATAAGAC-AAAATGAATAGTCATACTAATCCCCAATCTTTCAGGATTAGGAAC
** * * *
324826 CAAGAATGTATTCTCTTCATTAGGATACT
129 CAAGAACATAGTCTCTTCATAAGGATACA
* * * *
324855 TGACATTTAAGCTTTGGTGTCGCAAGAAACGCTTTTCTTTCAACCGTTTT-GATAGAACCAAAGT
1 TGACATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTGGATAGAACCAAAGT
* * *
324919 TTGTCTCTTATAA-AAGAC-ATATGAATAGTCATACTAATCCCTAATCTTTTCAGGATTAGGCAC
66 TTGTCTCTTA-AATAAGACAAAATGAATAGTCATACTAATCCCCAATC-TTTCAGGATTAGGAAC
*
324982 CGTA-AACATAGTCTACTT-ATAAGGATACA
129 C-AAGAACATAGTCT-CTTCATAAGGATACA
* * *
325011 TGATATTGATGCTTAGGTTTCGCAAGAAAGGCTTTT
1 TGACATTGATGCTTTGGTTTCGCAAGAAAAGCTTTT
325047 TTCCCACCAA
Statistics
Matches: 161, Mismatches: 26, Indels: 12
0.81 0.13 0.06
Matches are distributed among these distances:
155 25 0.16
156 62 0.39
157 30 0.19
158 44 0.27
ACGTcount: A:0.32, C:0.16, G:0.17, T:0.36
Consensus pattern (157 bp):
TGACATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTGGATAGAACCAAAGT
TTGTCTCTTAAATAAGACAAAATGAATAGTCATACTAATCCCCAATCTTTCAGGATTAGGAACCA
AGAACATAGTCTCTTCATAAGGATACA
Found at i:326490 original size:296 final size:292
Alignment explanation
Indices: 325953--326537 Score: 811
Period size: 296 Copynumber: 2.0 Consensus size: 292
325943 GATATTGATG
* *
325953 ATTTTATTTTGCATAGAAATGTTTCCTTTGCCCTATTTTCCTTAAAATCAAAGTTTATCCCTTAA
1 ATTTTATTTTGCATAGAAATATTTCCTTTGCCCTATTTTCCTTAAAATCAAAATTTATCCCTTAA
* * *
326018 AAAAGGCAAGCATTGATTCTCGTAACAATCCCCATTTTTTTCAAGATTGGGAACCAAAAATATTC
66 AAAAGGCAAACATTGATTCTCGTAACAATCCCCATTCTTTTCAAGATTAGGAACCAAAAATATTC
* *
326083 ATTAGGATACATGACATTGATGCTTTGAGATCGCATGAAAAGCTATTCTTTCCATCATTTTTGAT
131 ATTAGGATACATGACATTGATGCTTTGAGATCGCAAGAAAAGCTATTCTTTCAATCATTTTTGAT
326148 AGAATCAAAGTTTGTCTCTAAAATAAGACAAACATGAATAGTCATACTAATCCCCA-T-TCTTCT
196 AGAATCAAAGTTTGTCTCTAAAATAAGACAAACATGAATAGTCATACTAATCCCCATTATCTTCT
326211 CAAGATTAGGCACCACAAACATAGTCTTCATC
261 CAAGATTAGGCACCACAAACATAGTCTTCATC
* * *
326243 ATTTTCTTTTGCATGGAAATATTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTTAT-CCTTAA
1 ATTTTATTTTGCATAGAAATATTTCCTTTGCCCTATTTTCCTTAAAATCAAAATTTATCCCTTAA
* * *
326307 ATAAGGTAAACATTGATTCTCGTAACAATCTCCATTCTTTTCAAGATTAGGAACCAAAAACACAA
66 AAAAGGCAAACATTGATTCTCGTAACAATCCCCATTCTTTTCAAGATTAGGAACC---AA-A-AA
* * * * * *
326372 TCCCTTCATTAGGATGCATGACATTGATGCTTTG-GTGTTGCAAGAAAAGCTTTTTTTTCAA-CT
126 T--ATTCATTAGGATACATGACATTGATGCTTTGAG-ATCGCAAGAAAAGCTATTCTTTCAATC-
** * * *
326435 ATTTTTGATAGAATCAAAGTTTGTCTCTTTAATAAGATAAACATGTATTGTCATACTAATCCCCA
187 ATTTTTGATAGAATCAAAGTTTGTCTCTAAAATAAGACAAACATGAATAGTCATACTAATCCCCA
* * *
326500 TTATCTTTTTAGGATTAGGCACCACAAACATAGTCTTC
252 TTATCTTCTCAAGATTAGGCACCACAAACATAGTCTTC
326538 GCATAAGGAT
Statistics
Matches: 257, Mismatches: 27, Indels: 14
0.86 0.09 0.05
Matches are distributed among these distances:
289 55 0.21
290 53 0.21
292 2 0.01
293 1 0.00
294 3 0.01
295 2 0.01
296 108 0.42
297 1 0.00
298 32 0.12
ACGTcount: A:0.33, C:0.19, G:0.12, T:0.36
Consensus pattern (292 bp):
ATTTTATTTTGCATAGAAATATTTCCTTTGCCCTATTTTCCTTAAAATCAAAATTTATCCCTTAA
AAAAGGCAAACATTGATTCTCGTAACAATCCCCATTCTTTTCAAGATTAGGAACCAAAAATATTC
ATTAGGATACATGACATTGATGCTTTGAGATCGCAAGAAAAGCTATTCTTTCAATCATTTTTGAT
AGAATCAAAGTTTGTCTCTAAAATAAGACAAACATGAATAGTCATACTAATCCCCATTATCTTCT
CAAGATTAGGCACCACAAACATAGTCTTCATC
Found at i:327575 original size:478 final size:472
Alignment explanation
Indices: 326237--327959 Score: 2261
Period size: 478 Copynumber: 3.6 Consensus size: 472
326227 AAACATAGTC
* * * *
326237 TTCATCATTTTCTTTTGCATGGAAATATTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTTAT-
1 TTCATCA-TTTATTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCTTAAAATCAAAATTCATC
* * * * *
326301 CCTTAAATAAGGTAAACATTGATTCTCGTAACAATCTCCATTCTTTTCAAGATTAGGAACCAAAA
65 CCTTAAAAAAGGCAAACATTGATTCTCATAACAATCCCCATTCTTTTCAAGATTGGGAACC-AAA
* * * * *
326366 ACACAATCCCTTCATTAGGATGCATGACATTGATGCTTTG-GTGTTGCAAGAAAAGCTTTTTTTT
129 A-ACAAT--CTTCATTAGGATACATGACATTGATGCTTTGAG-ATCGCAAGAAAAGCTATTCTTT
* * ** * * *
326430 CAACTATTTTTGATAGAATCAAAGTTTGTCTCTTTAATAAGATAAACATGTATTGTCATACTAAT
190 CCACCATTTTTGATAGAATCAAAGTTTGTCTCTAAAATAAGACAAACATGAATAGTCATACTAAT
* *
326495 CCCCATTATCTTTTTAGGATTAGGCACCACAAACATAGTCTTCGCATAAGGATACACGATATTGA
255 CCCCATT-TCTTTTCAGGATTAGGCACCACAAACATAGTCTTCTCATAAGGATACACGATATTGA
* * *
326560 CGCTTTAGTTTTGCAAGAAAGGCTTTCTTCCC-CCTAATTTTTGTAAAGTCTAAGTCTGTGCCTC
319 CACTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACC-AATTTTTGTAAAGTCTAAGTCTGTGCCTC
* * * *
326624 AAATGAGTCAAACATGGATTCTAGTAAAGATCTTCATTCATTTTGTGATGAGGCACTATGAACAG
383 AAATGAGTCAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACAC
**
326689 ATTCTCCTTGTTACTATAAATGATA
448 ATTCTCCTCATTACTATAAATGATA
* * * * * *
326714 TTGATGAATTTATTTTGCATGGAAATGTTTCCTTTACCTTATTTTCCTTAAAATTAAAGTTCATC
1 TTCAT-CATTTATTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCTTAAAATCAAAATTCATC
* * *
326779 CTTTAAAAAAGGCAAGCATTGATTCTCAGTAACAGTCCCCACTT-TTTTCAAGATTGGGAACCAA
65 CCTTAAAAAAGGCAAACATTGATTCTCA-TAACAATCCCCA-TTCTTTTCAAGATTGGGAACCAA
*
326843 AAAC-A--TTCATTAGGATACATGACATTGATGCTTTGAGATCGCATGAAAAGCTATTCTTTCCA
128 AAACAATCTTCATTAGGATACATGACATTGATGCTTTGAGATCGCAAGAAAAGCTATTCTTTCCA
326905 CCATTTTTGATAGAATCAAAGTTTGTCTCTAAAATAAGACAAACATGAATAGTCATACTAATCCC
193 CCATTTTTGATAGAATCAAAGTTTGTCTCTAAAATAAGACAAACATGAATAGTCATACTAATCCC
* *
326970 CATTT-TTCTCAAGATTAGGCACCACAAACATAGTCTTCTCATAAGGATACACGATATTGACACT
258 CATTTCTTTTCAGGATTAGGCACCACAAACATAGTCTTCTCATAAGGATACACGATATTGACACT
* ** * * *
327034 TTGGTTTCGTAAGAAAGGCTTTCTTCCCATTAATTTTTGTAAAGTTTAAGTCTTTGCCTCAAATA
323 TTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTCTGTGCCTCAAATG
* * *
327099 AGTCAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGACACAATAAACACATTTT
388 AGTCAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCT
**
327164 CCTCATTAGGATAAATGATA
453 CCTCATTACTATAAATGATA
* * *
327184 TTCATCATTTACTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTTATC
1 TTCATCATTTA-TTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCTTAAAATCAAAATTCATC
* * *
327249 CCTTAAATAAGGTAAACATTGATTCTCATAACAATCTCCATTCTTTTCAAGATTGGGAACCAAAA
65 CCTTAAAAAAGGCAAACATTGATTCTCATAACAATCCCCATTCTTTTCAAGATTGGGAACC-AAA
* * * *
327314 ACACAATCTCTTCATTAGGATGCATGACATTGATGCTTTG-GCGTTGCAAGAAAAGCTTTTCTTT
129 A-ACAA--TCTTCATTAGGATACATGACATTGATGCTTTGAG-ATCGCAAGAAAAGCTATTCTTT
* * ** * * * *
327378 -CATCCGTTTTTGTTAGAATCAAAGTTTGTCTCTTTAATAAGATAAACATGAATTGTTATAATAA
190 CCA-CCATTTTTGATAGAATCAAAGTTTGTCTCTAAAATAAGACAAACATGAATAGTCATACTAA
*
327442 TCCCCATTTTCTTTTCAGGATTAGGCACCACAAACATAGTCTTCTCATAAGGATACATGATATTG
254 TCCCCA-TTTCTTTTCAGGATTAGGCACCACAAACATAGTCTTCTCATAAGGATACACGATATTG
* * *
327507 ACACTTTGGTTTCCCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCAAAGTCTGTGGCTC
318 ACACTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTCTGTGCCTC
327572 AAATGAGTCAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACAC
383 AAATGAGTCAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACAC
* *
327637 AATCTCTTCATTACTATAAATGATA
448 ATTCTCCTCATTACTATAAATGATA
* * * * * *
327662 TTGATGATTTTATTTTGCATAGAAATGTTTCCATTGCCCTATTTTCTTTAAAATCAAAGTTCATC
1 TTCATCA-TTTATTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCTTAAAATCAAAATTCATC
* * * *
327727 CCTTAAAAAAGGCAAGCATTGATTCTCGTAACAGTCCCCATTTTTTTCAAGATTGGGAACC--AA
65 CCTTAAAAAAGGCAAACATTGATTCTCATAACAATCCCCATTCTTTTCAAGATTGGGAACCAAAA
* * *
327790 A-AATATTCATTAGGATACATGACATTGATGCTTTGAGATCGCATGAAAAGCTATACTTTCCACC
130 ACAATCTTCATTAGGATACATGACATTGATGCTTTGAGATCGCAAGAAAAGCTATTCTTTCCACC
* *
327854 ATTTTTGATAGAATCAAAGTTTGTCTATAAAATAAGACAAACATGAATAGTCATATTAATCCCCA
195 ATTTTTGATAGAATCAAAGTTTGTCTCTAAAATAAGACAAACATGAATAGTCATACTAATCCCCA
* * * *
327919 -TTCTTATCAAGG-TTAGGCAGCACCAACGTAGTCTTCATCAT
260 TTTCTTTTC-AGGATTAGGCACCACAAACATAGTCTTC-TCAT
327960 TTCCTTTTGC
Statistics
Matches: 1084, Mismatches: 138, Indels: 55
0.85 0.11 0.04
Matches are distributed among these distances:
468 2 0.00
469 61 0.06
470 269 0.25
471 108 0.10
472 115 0.11
473 3 0.00
474 1 0.00
475 5 0.00
476 107 0.10
477 57 0.05
478 323 0.30
479 31 0.03
480 2 0.00
ACGTcount: A:0.32, C:0.18, G:0.13, T:0.36
Consensus pattern (472 bp):
TTCATCATTTATTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCC
CTTAAAAAAGGCAAACATTGATTCTCATAACAATCCCCATTCTTTTCAAGATTGGGAACCAAAAA
CAATCTTCATTAGGATACATGACATTGATGCTTTGAGATCGCAAGAAAAGCTATTCTTTCCACCA
TTTTTGATAGAATCAAAGTTTGTCTCTAAAATAAGACAAACATGAATAGTCATACTAATCCCCAT
TTCTTTTCAGGATTAGGCACCACAAACATAGTCTTCTCATAAGGATACACGATATTGACACTTTG
GTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTCTGTGCCTCAAATGAGT
CAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCT
CATTACTATAAATGATA
Found at i:328704 original size:767 final size:768
Alignment explanation
Indices: 327184--328725 Score: 2602
Period size: 767 Copynumber: 2.0 Consensus size: 768
327174 ATAAATGATA
327184 TTCATCATTTACTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTTATC
1 TTCATCATTTACTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTTATC
327249 CCTTAAATAAGGTAAACATTGATTCTCATAACAATCTCCATTCTTTTCAAGATTGGGAACCAAAA
66 CCTTAAATAAGGTAAACATTGATTCTCATAACAATCTCCATTCTTTTCAAGATTGGGAACCAAAA
* * *
327314 ACACAATCTCTTCATTAGGATGCATGACATTGATGCTTTGGCGTTGCAAGAAAAGCTTTTCTTTC
131 ACACAATCCCATCATTAGGATGCATGACATTGATGCTTTGGCGTTGCAAGAAAAACTTTTCTTTC
* *
327379 ATCCGTTTTTGTTAGAATCAAAGTTTGTCTCTTTAATAAGATAAACATGAATTGTTATAATAATC
196 AACCGTTTTTGTTAGAATCAAAGTTTGTCTCTTTAATAAGATAAACATGAATTGTCATAATAATC
*
327444 CCCATTTTCTTTTCAGGATTAGGCACCACAAACATAGTCTTCTCATAAGGATACATGATATTGAC
261 CCCATTTTCTTTTCAGGATTAGGCACCACAAACATAGTCTTCTCATAAGGATACACGATATTGAC
* * * *
327509 ACTTTGGTTTCCCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCAAAGTCTGTGGCTCAA
326 ACTTTAGTTTCCCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCAAAGCCCGTGCCTCAA
*
327574 ATGAGTCAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACAA
391 ATGAGTCAAACATGGATTCTAGTAATGATCTTCATTAATTTTGTGATTAGGCACTATAAACACAA
* * *
327639 TCTCTTCATTACTATAAATGATATTGATGATTTTATTTTGCATAGAAATGTTTCCATTGCCCTAT
456 TCTCCTCATTACTATAAATGATATTGATGAATTTATTTTGCATAGAAATGTTTCCATTACCCTAT
* *
327704 TTTCTTTAAAATCAAAGTTCATCCCTTAAAAAAGGCAAGCATTGATTCTCGTAACAGTCCCCATT
521 TCTCCTTAAAATCAAAGTTCATCCCTTAAAAAAGGCAAGCATTGATTCTCGTAACAGTCCCCATT
* * *
327769 TTTTTCAAGATTGGGAACCAAAAATATTCATTAGGATACATGACATTGATGCTTTGAGATCGCAT
586 TTTTTCAAGATTGGGAACCAAAAACATTCATTAGGATACATGACATTGATGCTTTAAGACCGCAT
327834 GAAAAGCTATACTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTATAAAATAAGACAAACATG
651 GAAAAGCTATACTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTATAAAATAAGACAAACATG
* * * * * *
327899 AATAGTCATATTAATCCCCATTCTTATCAAGGTTAGGCAGCACCAACGTAGTC
716 AATAGTCATACTAATCCCCAATCTTATCAAGATTAGGCACCACAAACATAGTC
*
327952 TTCATCATTTCCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTTATC
1 TTCATCATTTACTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTTATC
* * *
328017 CCTTAAATAAGGTAAACATTGATTCTCGTAACAATCTCCATTTTTTTCAAGATTGGGAACTAAAA
66 CCTTAAATAAGGTAAACATTGATTCTCATAACAATCTCCATTCTTTTCAAGATTGGGAACCAAAA
*
328082 ACACAATCCCATCATTAGGATGCATGACATTGATGCTTTGGTGTTGCAAGAAAAACTTTTCTTTC
131 ACACAATCCCATCATTAGGATGCATGACATTGATGCTTTGGCGTTGCAAGAAAAACTTTTCTTTC
* *
328147 AACCGTTTTTGTTAGAATCAAAGTTTGTCTCTTTAATATGATAAACATGAATTGTCATACTAATC
196 AACCGTTTTTGTTAGAATCAAAGTTTGTCTCTTTAATAAGATAAACATGAATTGTCATAATAATC
* *
328212 CCCATTTTCTTTTCAGGATTAGGCACCGCAAACATAGTCTTCTCATAAGGATATACGATATTGAC
261 CCCATTTTCTTTTCAGGATTAGGCACCACAAACATAGTCTTCTCATAAGGATACACGATATTGAC
* ** * * **
328277 GCTTTAGTTTTGCAAGAAAGGCTTTCTT-CCACCAATTTTTGTTAAGTCTAAGCCCGTGCCTTGA
326 ACTTTAGTTTCCCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCAAAGCCCGTGCCTCAA
* *
328341 ATGAGTCAAACATGGATTCTAGTAATGATCTTCATTAATTTTGTGATTAGGCACTATAAACAGAT
391 ATGAGTCAAACATGGATTCTAGTAATGATCTTCATTAATTTTGTGATTAGGCACTATAAACACAA
* * * *
328406 TCTCCTCCTTACTATAAATGATATTGATGAATTTATTTTGCATGGAAATGTTTCCTTTACCTTAT
456 TCTCCTCATTACTATAAATGATATTGATGAATTTATTTTGCATAGAAATGTTTCCATTACCCTAT
*
328471 TCTCCTTAAAATCAAAGTTCATCCTTTAAAAAAGGCAAGCATTGATTCTCGTAACAGTCCCCATT
521 TCTCCTTAAAATCAAAGTTCATCCCTTAAAAAAGGCAAGCATTGATTCTCGTAACAGTCCCCATT
*
328536 TTTTTCAAGATTGGGAACCAAAAGCATTCATTAGGATACATGACATTGATGCTTTAAGACCGCAT
586 TTTTTCAAGATTGGGAACCAAAAACATTCATTAGGATACATGACATTGATGCTTTAAGACCGCAT
* *
328601 GAAAAGCTATTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTAAAATAAGACAAACATG
651 GAAAAGCTATACTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTATAAAATAAGACAAACATG
*
328666 AATAGTCATACTAATCCCCAATCTTCTCAAGATTAGGCACCACAAACATAGTC
716 AATAGTCATACTAATCCCCAATCTTATCAAGATTAGGCACCACAAACATAGTC
328719 TTC-TCAT
1 TTCATCAT
328726 AAGGATACAC
Statistics
Matches: 722, Mismatches: 52, Indels: 2
0.93 0.07 0.00
Matches are distributed among these distances:
766 4 0.01
767 384 0.53
768 334 0.46
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.36
Consensus pattern (768 bp):
TTCATCATTTACTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTTATC
CCTTAAATAAGGTAAACATTGATTCTCATAACAATCTCCATTCTTTTCAAGATTGGGAACCAAAA
ACACAATCCCATCATTAGGATGCATGACATTGATGCTTTGGCGTTGCAAGAAAAACTTTTCTTTC
AACCGTTTTTGTTAGAATCAAAGTTTGTCTCTTTAATAAGATAAACATGAATTGTCATAATAATC
CCCATTTTCTTTTCAGGATTAGGCACCACAAACATAGTCTTCTCATAAGGATACACGATATTGAC
ACTTTAGTTTCCCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCAAAGCCCGTGCCTCAA
ATGAGTCAAACATGGATTCTAGTAATGATCTTCATTAATTTTGTGATTAGGCACTATAAACACAA
TCTCCTCATTACTATAAATGATATTGATGAATTTATTTTGCATAGAAATGTTTCCATTACCCTAT
TCTCCTTAAAATCAAAGTTCATCCCTTAAAAAAGGCAAGCATTGATTCTCGTAACAGTCCCCATT
TTTTTCAAGATTGGGAACCAAAAACATTCATTAGGATACATGACATTGATGCTTTAAGACCGCAT
GAAAAGCTATACTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTATAAAATAAGACAAACATG
AATAGTCATACTAATCCCCAATCTTATCAAGATTAGGCACCACAAACATAGTC
Found at i:329212 original size:469 final size:470
Alignment explanation
Indices: 327952--332701 Score: 5653
Period size: 469 Copynumber: 10.0 Consensus size: 470
327942 CAACGTAGTC
* *
327952 TTCATCATTTCCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTTATC
1 TTCATCATTTTCTTTTGCATGGAAATCTTTTCTTTGCCC-ATTTTCCTTAAAATC-AAATTCATC
* *
328017 CCTTAAATAAGGTAAACATTGATTCTCGTAACAATCTCCATTTTTTTCAAGATTGGGAACTAAAA
64 CCTTAAATAAGGCAAACATTGATTCTCGTAACAATCTCCATTTTTTTCAAGATTGGGAACCAAAA
* * * * *
328082 ACACAATCCCATCATTAGGATGCATGACATTGATGCTTTGGTGTTGCAAGAAAAACTTTTCTTTC
129 ACACAATCCCTTCATTAGGATACATGACATTGATGCTTTGG-GTCGCAAGAAAAGCTATTCTTTC
* ** * * *
328147 AACCGTTTTTGTTAGAATCAAAGTTTGTCTCTTTAATATGATAAACATGAATTGTCATACTAATC
193 AACCGTTTTTGATAGAATCAAAGTTTGTCTCTAAAATAAGACAAACATGAATAGTCATACTAATC
* * * *
328212 CCCATTTTCTTTTCAGGATTAGGCACCGCAAACATAGTCTTCTCATAAGGATATACGATATTGAC
258 CCCA--TTCTTCTCAAGATTAGGCACCACAAACATAGTCTTCTCATAAGGATACACGATATTGAC
* * * * * * **
328277 GCTTTAGTTTTGCAAGAAAGGCTTTCTT-CCACCAATTTTTGTTAAGTCTAAGCCCGTGCCTTGA
321 GCTTTGGTTTCGTAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTCTGTGCCTCAA
* * *
328341 ATGAGTCAAACATGGATTCTAGTAATGATCTTCATTAATTTTGTGATTAGGCACTATAAACAGAT
386 ATAAGTCAAACATGGATTCTAGTAATGATCTTCATTCA-TTTGTG-TTA-GCACTATAAACACAT
* **
328406 TCTCCTCCTTACTATAAATGATA
448 TCTCCTCATTAGGATAAATGATA
* * * * * * * * *
328429 TTGATGAATTTATTTTGCATGGAAATGTTTCCTTTACCTTATTCTCCTTAAAATCAAAGTTCATC
1 TTCATCATTTTCTTTTGCATGGAAATCTTTTCTTTGCC-CATTTTCCTTAAAATCAAA-TTCATC
* * * * *
328494 CTTTAAAAAAGGCAAGCATTGATTCTCGTAACAGTCCCCATTTTTTTCAAGATTGGGAACC-AAA
64 CCTTAAATAAGGCAAACATTGATTCTCGTAACAATCTCCATTTTTTTCAAGATTGGGAACCAAAA
* * ** *
328558 A-GC-A----TTCATTAGGATACATGACATTGATGCTTTAAGACCGCATGAAAAGCTATTCTTTC
129 ACACAATCCCTTCATTAGGATACATGACATTGATGCTTT-GGGTCGCAAGAAAAGCTATTCTTTC
* *
328617 CACCATTTTTGATAGAATCAAAGTTTGTCTCTAAAATAAGACAAACATGAATAGTCATACTAATC
193 AACCGTTTTTGATAGAATCAAAGTTTGTCTCTAAAATAAGACAAACATGAATAGTCATACTAATC
* * *
328682 CCCAATCTTCTCAAGATTAGGCACCACAAACATAGTCTTCTCATAAGGATACACGATATTGATGT
258 CCCATTCTTCTCAAGATTAGGCACCACAAACATAGTCTTCTCATAAGGATACACGATATTGACGC
* ** * * *
328747 TTTGGTTTCGTAAGAAAAGCTTTCTTCCTGCTAATTTTTGTAAAGTCGAAGTCTTTGCCTCAAAT
323 TTTGGTTTCGTAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTCTGTGCCTCAAAT
* * *
328812 AAGTCAAATATGGAATCTAGTAATGATCTTCATTCA-TTCTG-T-G-A-T-TAAACACATTCTCC
388 AAGTCAAACATGGATTCTAGTAATGATCTTCATTCATTTGTGTTAGCACTATAAACACATTCTCC
328871 TCATTAGGATAAATGATA
453 TCATTAGGATAAATGATA
*
328889 TTCATCATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCATTTATCCTTAAAATCAGAATTTATC
1 TTCATCATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCATTT-TCCTTAAAATCA-AATTCATC
* * *
328954 CCTTAAATAAGGTAAACATTGATTCTCGTAACAATCTCCATTCTTTTCAAGATTTGGAACCAAAA
64 CCTTAAATAAGGCAAACATTGATTCTCGTAACAATCTCCATTTTTTTCAAGATTGGGAACCAAAA
* * * * *
329019 ACACAATCCCTTCATTAGGATGCATGACATTGATGCTTTGGCGTTGCAAGAACAGTTTTTCTTTC
129 ACACAATCCCTTCATTAGGATACATGACATTGATGCTTTGG-GTCGCAAGAAAAGCTATTCTTTC
* ** * *
329084 AACCGTTTTTGTTAGAATCAAAGTTTGTCTCTTTAATAAGATAAACATGAATTGTCATACTAATC
193 AACCGTTTTTGATAGAATCAAAGTTTGTCTCTAAAATAAGACAAACATGAATAGTCATACTAATC
* * * * * **
329149 CCAATTTTCTTTTCAGGATTAGGCACAACAAACATAGTCTTCTCATAGGGATACATTATATTGAC
258 CCCA--TTCTTCTCAAGATTAGGCACCACAAACATAGTCTTCTCATAAGGATACACGATATTGAC
** * * * *
329214 GCTTTACTTTTGCT-AGAAAGTCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTCCGTGCCTCG
321 GCTTTGGTTTCG-TAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTCTGTGCCTCA
* * *
329278 AATGAGTCAAACATGGATTCTAGTAATGATCTTCAATCATTTTGTGATTAGGCACTATAAACAGA
385 AATAAGTCAAACATGGATTCTAGTAATGATCTTCATTCA-TTTGTG-TTA-GCACTATAAACACA
* **
329343 TTCTCCTCCTTACTATAAATGATA
447 TTCTCCTCATTAGGATAAATGATA
* * * * * * * *
329367 TTGATGAATTTATTTTGCATGGAAATGTTTCCTTTACCTTATTTTCCTTAAAATCAAAGTTCATC
1 TTCATCATTTTCTTTTGCATGGAAATCTTTTCTTTGCC-CATTTTCCTTAAAATCAAA-TTCATC
* * * * * * *
329432 CTTTAAAAAAGGCAAGCATTGATTATCGTAACAGTCCCCATTTTTTTCAAGATTGGGGACC-AAA
64 CCTTAAATAAGGCAAACATTGATTCTCGTAACAATCTCCATTTTTTTCAAGATTGGGAACCAAAA
* *
329496 A-AC-A----TTCATTAGGATACATGACATTGATGCTTTGAGATCGCATGAAAAGCTATTCTTTC
129 ACACAATCCCTTCATTAGGATACATGACATTGATGCTTTG-GGTCGCAAGAAAAGCTATTCTTTC
* * * *
329555 CACCATTTTTGATAGAATCAAAGTTTGCCTCTAAAATAAGACAAACATGAATTGTCATACTAATC
193 AACCGTTTTTGATAGAATCAAAGTTTGTCTCTAAAATAAGACAAACATGAATAGTCATACTAATC
* * * * *
329620 CCCATTCTTCTCAAAATTAGGCACCATAAACATAGTCTTCTCACAAGGATACAGGATATTGATGC
258 CCCATTCTTCTCAAGATTAGGCACCACAAACATAGTCTTCTCATAAGGATACACGATATTGACGC
* * * *
329685 TTTAGTTTCGTAAGAAAGGCTTTCTTTCCACTAATTTTTGTAAAGTCTAAGTCTTTGCCTCAAAT
323 TTTGGTTTCGTAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTCTGTGCCTCAAAT
* **
329750 AAGTCAAACATGGATTCTAGTATTGATCTTCATTCATTTTGTGATTAGACAAAATAAACACATTC
388 AAGTCAAACATGGATTCTAGTAATGATCTTCATTCA-TTTGTG-TTAG-CACTATAAACACATTC
*
329815 TCCACATTAGGATAAATGATA
450 TCCTCATTAGGATAAATGATA
*
329836 TTCATCATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTTATC
1 TTCATCATTTTCTTTTGCATGGAAATCTTTTCTTTGCCC-ATTTTCCTTAAAATC-AAATTCATC
* * * **
329901 CCTCAAATAAGGTAAACGTTGATTCTCGTAACAATCTCCATTCCTTTCAAGATTGGGAACCAAAA
64 CCTTAAATAAGGCAAACATTGATTCTCGTAACAATCTCCATTTTTTTCAAGATTGGGAACCAAAA
* * * *
329966 GCACAATCCCTTCATTAGGATGCATGACATTGATGCTTTGAGATCGCATGAAAAGCTATTCTTTC
129 ACACAATCCCTTCATTAGGATACATGACATTGATGCTTTG-GGTCGCAAGAAAAGCTATTCTTTC
* *
330031 CACCATTTTTTGATAGAATCAAAGTTTGTCTCTAAAATAAGACAAACATGAATAGTCATACTAAT
193 AACC-GTTTTTGATAGAATCAAAGTTTGTCTCTAAAATAAGACAAACATGAATAGTCATACTAAT
330096 CCCCATTCTTCTCAAGATTAGGCACCACAAACATAGTCTTCTCATAAGGATACACGATATTGACG
257 CCCCATTCTTCTCAAGATTAGGCACCACAAACATAGTCTTCTCATAAGGATACACGATATTGACG
* * * *
330161 CTTTGGTTTCATAAGAAAGGCTTTCTT-CCAGCTAATTTTTGTAAAGTCTAAGTGTTTGCCTCAA
322 CTTTGGTTTCGTAAGAAAGGCTTTCTTCCCA-CCAATTTTTGTAAAGTCTAAGTCTGTGCCTCAA
* * * *
330225 ATAAGTCAAACATGGAATCTGGTAATGATCTTCATTTATTCTGTGTTTAGACACAATAAACACAT
386 ATAAGTCAAACATGGATTCTAGTAATGATCTTCATTCATT-TGTG-TTAG-CACTATAAACACAT
330290 TCTCCTCATTAGGATAAATGATA
448 TCTCCTCATTAGGATAAATGATA
* *
330313 TTCATCATTTTCTTTTGCATGGAAATCTTTTCTTTGTCCTATTTTCCTTAAAATCAAATTTATCC
1 TTCATCATTTTCTTTTGCATGGAAATCTTTTCTTTG-CCCATTTTCCTTAAAATCAAATTCATCC
* * * * *
330378 CTTAAATATGGTAAACATTGATTCTTGTAACAATCTCCATTCTTTTCAAGATTCGGAACCAAAAA
65 CTTAAATAAGGCAAACATTGATTCTCGTAACAATCTCCATTTTTTTCAAGATTGGGAACCAAAAA
* * *
330443 CACAATCCCTTCATTAGGATGCATGACATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTCTTTCA
130 CACAATCCCTTCATTAGGATACATGACATTGATGCTTTGG-GTCGCAAGAAAAGCTATTCTTTCA
* * ** * * *
330508 ACCGTTTTTGTTAGAATCAAAGCTTGTCTCTGTAATAAGATAAACATGGATTGTCATACTAATCC
194 ACCGTTTTTGATAGAATCAAAGTTTGTCTCTAAAATAAGACAAACATGAATAGTCATACTAATCC
* * * * * * *
330573 CCAATTTCTTTTCAGGATTAGGCACAATAGATATAGTCTTCTCATAGGGATACACGATATTGACG
259 CC-A-TTCTTCTCAAGATTAGGCACCACAAACATAGTCTTCTCATAAGGATACACGATATTGACG
* * * * * * *
330638 CTTTACG-TTGGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAATCCGTGCCTCGA
322 CTTT-GGTTTCGTAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTCTGTGCCTCAA
* *
330702 ATGAGTCAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACAGAT
386 ATAAGTCAAACATGGATTCTAGTAATGATCTTCATTCA-TTTGTG-TTA-GCACTATAAACACAT
* **
330767 TCTCCTCGTTACTATAAATGATA
448 TCTCCTCATTAGGATAAATGATA
* * * * * * * *
330790 TTGATGAATTTATTTTGCATGGAAATGTTTCCTTTACCTTATTTTCCTTAAAATCAAAGTTCATC
1 TTCATCATTTTCTTTTGCATGGAAATCTTTTCTTTGCC-CATTTTCCTTAAAATCAAA-TTCATC
* * * * * * *
330855 CTTTAAAAAAGGCAAGCATTGATTCTCGTAACAGTCCCCATTTTTTTCCAGATTGGGGACC-AAA
64 CCTTAAATAAGGCAAACATTGATTCTCGTAACAATCTCCATTTTTTTCAAGATTGGGAACCAAAA
* *
330919 A-AC-A----TTCATTAGGATACATGACATTGATGCTTTGAGATCGCATGAAAAGCTATTCTTTC
129 ACACAATCCCTTCATTAGGATACATGACATTGATGCTTTG-GGTCGCAAGAAAAGCTATTCTTTC
* * * *
330978 CACCATTTTTGATAGAATCAAAGTTTGTCTCCAAAATAAGATAAACATGAATAGTCATACTAATC
193 AACCGTTTTTGATAGAATCAAAGTTTGTCTCTAAAATAAGACAAACATGAATAGTCATACTAATC
*
331043 CCCATTCTTCTCAAGATTAGGCACCACAAACATAGTCTTCTCATAAGGATACAGGATATTGACGC
258 CCCATTCTTCTCAAGATTAGGCACCACAAACATAGTCTTCTCATAAGGATACACGATATTGACGC
* * * *
331108 TTTGGTTACGTAAGAAAAGCTTTCTTCCCACTAATTTTTGTAAAGTCTAAGTCTTTGCCTCAAAT
323 TTTGGTTTCGTAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTCTGTGCCTCAAAT
* * *
331173 AAGTTAAACTTGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGACACAATAAACACATTC
388 AAGTCAAACATGGATTCTAGTAATGATCTTCATTCA-TTTGTG-TTAG-CACTATAAACACATTC
331238 TCCTCATTAGGATAAATGATA
450 TCCTCATTAGGATAAATGATA
* * *
331259 TTCATCATTTTCTTTTACAAGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTTATC
1 TTCATCATTTTCTTTTGCATGGAAATCTTTTCTTTGCCC-ATTTTCCTTAAAATC-AAATTCATC
* * * *
331324 CCTTAAATAAGGTAAACATTGATTCTCATAACAATCTCCATTATTTTCAAGATTAGGAACCAAAA
64 CCTTAAATAAGGCAAACATTGATTCTCGTAACAATCTCCATTTTTTTCAAGATTGGGAACCAAAA
* * * *
331389 ACACAATCCCTTTATTAGGATGCATGACATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTCTTTC
129 ACACAATCCCTTCATTAGGATACATGACATTGATGCTTTGG-GTCGCAAGAAAAGCTATTCTTTC
* ** * * *
331454 AACCGTTTTTGTTAGAATCAAAGTTTGTCTCTTTAATAAGATAAATATGAATTGTCATACTAATC
193 AACCGTTTTTGATAGAATCAAAGTTTGTCTCTAAAATAAGACAAACATGAATAGTCATACTAATC
* * * * * *
331519 CCCATTTTCTTTTCAGGATTAGGCACAACAAACATAGTCTTCTCGTAGGGATACACGATTTTGAC
258 CCCA--TTCTTCTCAAGATTAGGCACCACAAACATAGTCTTCTCATAAGGATACACGATATTGAC
** * * * *
331584 GCTTTACTTTTGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTCCGTGCCTCGA
321 GCTTTGGTTTCGTAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTCTGTGCCTCAA
* *
331649 ATGAGTCAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACAGAT
386 ATAAGTCAAACATGGATTCTAGTAATGATCTTCATTCA-TTTGTG-TTA-GCACTATAAACACAT
* **
331714 TCTCCTCGTTACTATAAATGATA
448 TCTCCTCATTAGGATAAATGATA
* * * * * * * * *
331737 TTGATGAATTTATTTTGCATGGAAATGTTTCCTTTACCTTATTTTCCTTAAAATTAAAGTTCATC
1 TTCATCATTTTCTTTTGCATGGAAATCTTTTCTTTGCC-CATTTTCCTTAAAATCAAA-TTCATC
* * * * * * *
331802 CTTTAAAAAAGGCAAGCATTAATTCTCGTAACAGTCCCCATTTTTTTCAAGATTGGGAA-CTAAA
64 CCTTAAATAAGGCAAACATTGATTCTCGTAACAATCTCCATTTTTTTCAAGATTGGGAACCAAAA
* * *
331866 A-AC-A----TTCATTAGGATACATGACATTGATGGTTTGAGATCGCATGAAAAGCTATTCTTTC
129 ACACAATCCCTTCATTAGGATACATGACATTGATGCTTTG-GGTCGCAAGAAAAGCTATTCTTTC
* * *
331925 CATCATTTTTGATAGAATCAAAGTTTGTCTCTAAAATAAGACAAACATGAATAGTCATACTAATC
193 AACCGTTTTTGATAGAATCAAAGTTTGTCTCTAAAATAAGACAAACATGAATAGTCATACTAATC
* * *
331990 CCCATTCTTCTCAAGATTAGGCACCATAAACATAGTCTTCTCACAAGGATACACGATATTGACAC
258 CCCATTCTTCTCAAGATTAGGCACCACAAACATAGTCTTCTCATAAGGATACACGATATTGACGC
*
332055 TTTGGTTTCGTAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAATCTGTGCCTCAAAT
323 TTTGGTTTCGTAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTCTGTGCCTCAAAT
*
332120 AAGTCAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGACACAATAAACACATTC
388 AAGTCAAACATGGATTCTAGTAATGATCTTCATTCA-TTTGTG-TTAG-CACTATAAACACATTC
332185 TCCTCATTAGGATAAATGATA
450 TCCTCATTAGGATAAATGATA
*
332206 TTCATCATTTTCTTCTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATC
1 TTCATCATTTTCTTTTGCATGGAAATCTTTTCTTTGCCC-ATTTTCCTTAAAATC-AAATTCATC
* * * * * ** * * *
332271 CCTAAAATATGACAAGCATCGATTCTCGTAACAGA-CTCCATTCCTTTCAAGATTAGGAACTAAG
64 CCTTAAATAAGGCAAACATTGATTCTCGTAACA-ATCTCCATTTTTTTCAAGATTGGGAACCAAA
* * * * * * *
332335 AACACATTCCCTTTAGTAAGATACATGTCATTGATGCTTTTGTGTCAG-AAGAAAAGCTTTTCTT
128 AACACAATCCCTTCATTAGGATACATGACATTGATGC-TTTGGGTC-GCAAGAAAAGCTATTCTT
* ** * * *
332399 TCAACCGTTTTTTATAGAATCAATA-TTTGTCTCTTTAGTAAGACAAACGTGAATAATCATACTA
191 TCAACCGTTTTTGATAGAATCAA-AGTTTGTCTCTAAAATAAGACAAACATGAATAGTCATACTA
* * * * *
332463 GTGCCCATTCTTTTCAGGATTAGGCACCACAAACATAGTCTTCTCATTAA-GATAGACGATATTG
255 ATCCCCATTCTTCTCAAGATTAGGCACCACAAACATAGTCTTCTCA-TAAGGATACACGATATTG
* * * * * *
332527 ATGCTTTGGTTTCGCAAGATAGGCTTTCTTCCCTCCAATTTTTGTAAAGTCCAAGTTTGTGCCTC
319 ACGCTTTGGTTTCGTAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTCTGTGCCTC
* * *
332592 AAATGAGTCAAACATGGATTCTAGCAATGATCTACATTCATTTTGTGATTAG-ACATAATAAACA
384 AAATAAGTCAAACATGGATTCTAGTAATGATCTTCATTCA-TTTGTG-TTAGCAC-T-ATAAACA
* *
332656 CATTCTCTTCATTAGGATAAATGCTA
445 CATTCTCCTCATTAGGATAAATGATA
* *
332682 TTGATGATTTTCTTTTGCAT
1 TTCATCATTTTCTTTTGCAT
332702 CGATTCTCCT
Statistics
Matches: 3649, Mismatches: 535, Indels: 179
0.84 0.12 0.04
Matches are distributed among these distances:
459 3 0.00
460 129 0.04
461 7 0.00
462 2 0.00
463 2 0.00
465 1 0.00
466 1 0.00
467 109 0.03
468 81 0.02
469 1039 0.28
470 126 0.03
471 331 0.09
472 5 0.00
473 1 0.00
474 3 0.00
475 63 0.02
476 615 0.17
477 654 0.18
478 472 0.13
479 5 0.00
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.36
Consensus pattern (470 bp):
TTCATCATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCATTTTCCTTAAAATCAAATTCATCCC
TTAAATAAGGCAAACATTGATTCTCGTAACAATCTCCATTTTTTTCAAGATTGGGAACCAAAAAC
ACAATCCCTTCATTAGGATACATGACATTGATGCTTTGGGTCGCAAGAAAAGCTATTCTTTCAAC
CGTTTTTGATAGAATCAAAGTTTGTCTCTAAAATAAGACAAACATGAATAGTCATACTAATCCCC
ATTCTTCTCAAGATTAGGCACCACAAACATAGTCTTCTCATAAGGATACACGATATTGACGCTTT
GGTTTCGTAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTCTGTGCCTCAAATAAG
TCAAACATGGATTCTAGTAATGATCTTCATTCATTTGTGTTAGCACTATAAACACATTCTCCTCA
TTAGGATAAATGATA
Found at i:329723 original size:159 final size:154
Alignment explanation
Indices: 328568--332137 Score: 708
Period size: 159 Copynumber: 22.7 Consensus size: 154
328558 AGCATTCATT
* ** * *
328568 AGGATACATGACATTGATGCTTTAAG-ACCGCATGAAAAGCTATTCTTTCCAC-CATTTTTGATA
1 AGGATACATGATATTGATGCTTT-AGTTTCGCAAGAAAAGCT-TTCTTTCCACTAATTTTTG-TA
* ** *
328631 GAATCAAAGTTTGTCTCTAAAATAAGACAAACATGAATAGTCATACTAATCCCCAATCTTCTCAA
63 -AATCAAAGTTTGCCTCT-AAATAAGACAAACATGAATTCTCATACTAATCCCCATTCTT-TCAA
* * *
328696 GATTAGGCACCACAAACATAGTCTTCTCATA
125 GATTAGGCACCATAAACACAGTC-TCTCACA
* * * * *
328727 AGGATACACGATATTGATGTTTTGGTTTCGTAAGAAAAGCTTTC-TTCCTGCTAATTTTTGTAAA
1 AGGATACATGATATTGATGCTTTAGTTTCGCAAGAAAAGCTTTCTTTCC-ACTAATTTTTGTAAA
* * * * * ** * *
328791 GTCGAAGTCTTTGCCTC-AAATAAGTCAAATATGGAA-TCT-AGTAATGATCTTCATTCATTC-T
65 -TCAAAG--TTTGCCTCTAAATAAGACAAACAT-GAATTCTCA-TACTAATCCCCATTCTTTCAA
* * **
328852 G--T--G-A--TTAAACACATTCTCCTCATT
125 GATTAGGCACCATAAACACAGTCT-CTCACA
* * ** * * * * * * ** *
328876 AGGATAAATGATATTCAT-CATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCATTTATCCTT-A
1 AGGATACATGATATTGATGC-TTTAGTTTCGCAAGAAAAGC-TTTCTTT--CCACTAATTTTTGT
* * ** * *
328939 AAATCAGAATTTATCCCT-TAAATAAGGTAAACATTG-ATTCTCGTAAC-AATCTCCATTCTTTT
62 AAATCA-AAGTT-TGCCTCTAAATAAGACAAACA-TGAATTCTCAT-ACTAATCCCCATTC-TTT
* * * * * **
329001 CAAGATTTGGAACCAAAAACACAATCCCTTCATT
122 CAAGATTAGGCACCATAAACACAGTCTC-TCACA
* * * * * * * **
329035 AGGATGCATGACATTGATGCTTTGGCGTT-GCAAGAACAGTTTTTCTTTCAAC-CGTTTTTGTTA
1 AGGATACATGATATTGATGCTTTAG-TTTCGCAAGAAAAG-CTTTCTTTCCACTAATTTTTG-TA
* * * * *
329098 GAATCAAAGTTTGTCTCTTTAATAAGATAAACATGAATTGTCATACTAATCCCAATTTTCTTTTC
63 -AATCAAAGTTTGCCTC-TAAATAAGACAAACATGAATTCTCATACTAATCCCCA--TTC-TTTC
* * * * *
329163 AGGATTAGGCACAACAAACATAGTCTTCTCATA
123 AAGATTAGGCACCATAAACACAGTC-TCTCACA
* * * * * * * *
329196 GGGATACATTATATTGACGCTTTACTTTTGCTAG-AAAGTCTTTCTTCCCACCAATTTTTGTAAA
1 AGGATACATGATATTGATGCTTTAGTTTCGCAAGAAAAG-CTTTCTTTCCACTAATTTTTGTAAA
* * * * * * * * ** * ***
329260 GTCTAAGTCCGTGCCTC-GAATGAGTCAAACATGGATTCT-AGTAATGATCTTCAATCATTTTGT
65 -TCAAAGT--TTGCCTCTAAATAAGACAAACATGAATTCTCA-TACTAATCCCCATTC-TTTCAA
* * * *
329323 GATTAGGCACTATAAACAGATTCTCCTC-CTT
125 GATTAGGCACCATAAACACAGTCT-CTCAC-A
** * * * * * * *
329354 ACTATAAATGATATTGATGAATTTA-TTTTGCATGGAAATG-TTTCCTTTAC-CTTATTTTCCT-
1 AGGATACATGATATTGATG-CTTTAGTTTCGCA-AGAAAAGCTTT-CTTTCCACTAATTTT--TG
* * * * * * * *
329415 TAAAATCAAAGTTCAT-CCTTTAAAAAAGGCAAGCATTG-ATTATCGTAAC-AGTCCCCATTTTT
61 T-AAATCAAAGTT--TGCCTCTAAATAAGACAAACA-TGAATTCTCAT-ACTAATCCCCA-TTCT
* * **
329477 TTCAAGATTGGGGACCA-AAA-ACA---T-TCATT
120 TTCAAGATTAGGCACCATAAACACAGTCTCTCACA
* * * *
329506 AGGATACATGACATTGATGCTTTGAG-ATCGCATGAAAAGCTATTCTTTCCAC-CATTTTTGATA
1 AGGATACATGATATTGATGCTTT-AGTTTCGCAAGAAAAGCT-TTCTTTCCACTAATTTTTG-TA
*
329569 GAATCAAAGTTTGCCTCTAAAATAAGACAAACATGAATTGTCATACTAATCCCCATTCTTCTCAA
63 -AATCAAAGTTTGCCTCT-AAATAAGACAAACATGAATTCTCATACTAATCCCCATTCTT-TCAA
* *
329634 AATTAGGCACCATAAACATAGTCTTCTCACA
125 GATTAGGCACCATAAACACAGTC-TCTCACA
* * *
329665 AGGATACAGGATATTGATGCTTTAGTTTCGTAAGAAAGGCTTTCTTTCCACTAATTTTTGTAAAG
1 AGGATACATGATATTGATGCTTTAGTTTCGCAAGAAAAGCTTTCTTTCCACTAATTTTTGTAAA-
* * * * * ** ***
329730 TCTAAGTCTTTGCCTC-AAATAAGTCAAACATGGATTCT-AGTATTGATCTTCATTCATTTTGTG
65 TCAAAG--TTTGCCTCTAAATAAGACAAACATGAATTCTCA-TACTAATCCCCATTC-TTTCAAG
* ** *
329793 ATTAGACAAAATAAACACATTCTC-CACA
126 ATTAGGCACCATAAACACAGTCTCTCACA
* * ** * * * *
329821 TTAGGATAAATGATATTCAT-CATTTTCTTTTGCATGGAAATCTTTTCTTTGCC-CT-ATTTTCC
1 --AGGATACATGATATTGATGC-TTTAGTTTCGCAAGAAAAGC-TTTCTTT-CCACTAATTTT--
* * ** * * *
329883 T-TAAAATCAAAATTTATCC-CTCAAATAAGGTAAACGTTG-ATTCTCGTAAC-AATCTCCATTC
59 TGT-AAATCAAAGTTT-GCCTCT-AAATAAGACAAAC-ATGAATTCTCAT-ACTAATCCCCATT-
* * * * **
329944 CTTTCAAGATTGGGAACCA-AAAGCACAATCCCTTCATT
118 CTTTCAAGATTAGGCACCATAAA-CACAGTCTC-TCACA
* * * * * *
329982 AGGATGCATGACATTGATGCTTTGAG-ATCGCATGAAAAGCTATTCTTTCCACCATTTTTTGATA
1 AGGATACATGATATTGATGCTTT-AGTTTCGCAAGAAAAGCT-TTCTTTCCACTAATTTTTG-TA
* **
330046 GAATCAAAGTTTGTCTCTAAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTCTCAA
63 -AATCAAAGTTTGCCTCT-AAATAAGACAAACATGAATTCTCATACTAATCCCCATTCTT-TCAA
* * *
330111 GATTAGGCACCACAAACATAGTCTTCTCATA
125 GATTAGGCACCATAAACACAGTC-TCTCACA
* * * ** *
330142 AGGATACACGATATTGACGCTTTGGTTTCATAAGAAAGGCTTTC-TTCCAGCTAATTTTTGTAAA
1 AGGATACATGATATTGATGCTTTAGTTTCGCAAGAAAAGCTTTCTTTCCA-CTAATTTTTGTAAA
* * ** * * ** *
330206 GTCTAAGTGTTTGCCTC-AAATAAGTCAAACATGGAA-TCTGGTAATGATCTTCATT-TATTCTG
65 -TC-AA-AGTTTGCCTCTAAATAAGACAAACAT-GAATTCTCATACTAATCCCCATTCT-TTC-A
* * * * * **
330268 TGTTTAGACACAATAAACACATTCTCCTCATT
124 AGATTAGGCACCATAAACACAGTCT-CTCACA
* * ** * * * * *
330300 AGGATAAATGATATTCAT-CATTTTCTTTTGCATGGAAATCTTTTCTTTGTC-CT-ATTTTCCT-
1 AGGATACATGATATTGATGC-TTTAGTTTCGCAAGAAAAGC-TTTCTTT-CCACTAATTTT--TG
* * * ** ** *
330361 TAAAATCAAATTTATCCCT-TAAATATGGTAAACATTG-ATTCTTGTAAC-AATCTCCATTCTTT
61 T-AAATCAAAGTT-TGCCTCTAAATAAGACAAACA-TGAATTCTCAT-ACTAATCCCCATTC-TT
* * * * * **
330423 TCAAGATTCGGAACCAAAAACACAATCCCTTCATT
121 TCAAGATTAGGCACCATAAACACAGTCTC-TCACA
* * * * **
330458 AGGATGCATGACATTGATGCTTTGGTGTT-GCAAGAAAAGCTTTTCTTTCAAC-CGTTTTTGTTA
1 AGGATACATGATATTGATGCTTTAGT-TTCGCAAGAAAAGC-TTTCTTTCCACTAATTTTTG-TA
* * * * * *
330521 GAATCAAAGCTTGTCTCTGTAATAAGATAAACATGGATTGTCATACTAATCCCCAATTTCTTTTC
63 -AATCAAAGTTTGCCTCT-AAATAAGACAAACATGAATTCTCATACTAATCCCC-A-TTC-TTTC
* * * * * *
330586 AGGATTAGGCACAATAGATATAGTCTTCTCATA
123 AAGATTAGGCACCATAAACACAGTC-TCTCACA
* * * * * *
330619 GGGATACACGATATTGACGCTTTACG-TTGGCAAGAAAGGCTTT-TTTCCCACCAATTTTTGTAA
1 AGGATACATGATATTGATGCTTTA-GTTTCGCAAGAAAAGCTTTCTTT-CCACTAATTTTTGTAA
* * * * * * * ** *
330682 AGTCTAAA-TCCGTGCCTC-GAATGAGTCAAACATGGATTCT-AGTAATGATCTTCATTCATTTT
64 A-TC-AAAGT--TTGCCTCTAAATAAGACAAACATGAATTCTCA-TACTAATCCCCATTC-TTTC
** * * * ***
330744 GTGATTAGGCACTATAAACAGATTCTCCTCGTT
123 AAGATTAGGCACCATAAACACAGTCT-CTCACA
** * * * * * * *
330777 ACTATAAATGATATTGATGAATTTA-TTTTGCATGGAAATG-TTTCCTTTAC-CTTATTTTCCT-
1 AGGATACATGATATTGATG-CTTTAGTTTCGCA-AGAAAAGCTTT-CTTTCCACTAATTTT--TG
* * * * * * *
330838 TAAAATCAAAGTTCAT-CCTTTAAAAAAGGCAAGCATTG-ATTCTCGTAAC-AGTCCCCATTTTT
61 T-AAATCAAAGTT--TGCCTCTAAATAAGACAAACA-TGAATTCTCAT-ACTAATCCCCA-TTCT
* * * **
330900 TTCCAGATTGGGGACCA-AAA-ACA---T-TCATT
120 TTCAAGATTAGGCACCATAAACACAGTCTCTCACA
* * * *
330929 AGGATACATGACATTGATGCTTTGAG-ATCGCATGAAAAGCTATTCTTTCCAC-CATTTTTGATA
1 AGGATACATGATATTGATGCTTT-AGTTTCGCAAGAAAAGCT-TTCTTTCCACTAATTTTTG-TA
* * * **
330992 GAATCAAAGTTTGTCTCCAAAATAAGATAAACATGAATAGTCATACTAATCCCCATTCTTCTCAA
63 -AATCAAAGTTTGCCT-CTAAATAAGACAAACATGAATTCTCATACTAATCCCCATTCTT-TCAA
* * *
331057 GATTAGGCACCACAAACATAGTCTTCTCATA
125 GATTAGGCACCATAAACACAGTC-TCTCACA
* * * * * *
331088 AGGATACAGGATATTGACGCTTTGGTTACGTAAGAAAAGCTTTCTTCCCACTAATTTTTGTAAAG
1 AGGATACATGATATTGATGCTTTAGTTTCGCAAGAAAAGCTTTCTTTCCACTAATTTTTGTAAA-
* ** * * * * ** ***
331153 TCTAAGTCTTTGCCTC-AAATAAGTTAAACTTGGATTCT-AGTAATGATCTTCATTCATTTTGTG
65 TCAAAG--TTTGCCTCTAAATAAGACAAACATGAATTCTCA-TACTAATCCCCATTC-TTTCAAG
* * * **
331216 ATTAGACACAATAAACACATTCTCCTCATT
126 ATTAGGCACCATAAACACAGTCT-CTCACA
* * ** ** * *
331246 AGGATAAATGATATTCAT-CATTTTCTTTTACAAGGAAATCTTTTCTTTGCC-CT-ATTTTCCT-
1 AGGATACATGATATTGATGC-TTTAGTTTCGCAAGAAAAGC-TTTCTTT-CCACTAATTTT--TG
* * ** * *
331307 TAAAATCAAAATTTATCC-CTTAAATAAGGTAAACATTG-ATTCTCATAAC-AATCTCCATTATT
61 T-AAATCAAAGTTT-GCCTC-TAAATAAGACAAACA-TGAATTCTCAT-ACTAATCCCCATT-CT
* * * * * **
331369 TTCAAGATTAGGAACCAAAAACACAATCCCTTTATT
120 TTCAAGATTAGGCACCATAAACACAGTCTC-TCACA
* * * * **
331405 AGGATGCATGACATTGATGCTTTGGTGTT-GCAAGAAAAGCTTTTCTTTCAAC-CGTTTTTGTTA
1 AGGATACATGATATTGATGCTTTAGT-TTCGCAAGAAAAGC-TTTCTTTCCACTAATTTTTG-TA
* * * * *
331468 GAATCAAAGTTTGTCTCTTTAATAAGATAAATATGAATTGTCATACTAATCCCCATTTTCTTTTC
63 -AATCAAAGTTTGCCTC-TAAATAAGACAAACATGAATTCTCATACTAATCCCCA--TTC-TTTC
* * * * **
331533 AGGATTAGGCACAACAAACATAGTCTTCTCGTA
123 AAGATTAGGCACCATAAACACAGTC-TCTCACA
* * * * * * * * *
331566 GGGATACACGATTTTGACGCTTTACTTTTGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAG
1 AGGATACATGATATTGATGCTTTAGTTTCGCAAGAAAAGCTTTCTTTCCACTAATTTTTGTAAA-
* * * * * * * * ** ***
331631 TCTAAGTCCGTGCCTC-GAATGAGTCAAACATGGATTCT-AGTAATGATCTTCATTCATTTTGTG
65 TCAAAGT--TTGCCTCTAAATAAGACAAACATGAATTCTCA-TACTAATCCCCATTC-TTTCAAG
* * * ***
331694 ATTAGGCACTATAAACAGATTCTCCTCGTT
126 ATTAGGCACCATAAACACAGTCT-CTCACA
** * * * * * * *
331724 ACTATAAATGATATTGATGAATTTA-TTTTGCATGGAAATG-TTTCCTTTAC-CTTATTTTCCT-
1 AGGATACATGATATTGATG-CTTTAGTTTCGCA-AGAAAAGCTTT-CTTTCCACTAATTTT--TG
* * * * * * * * *
331785 TAAAATTAAAGTTCAT-CCTTTAAAAAAGGCAAGCATTAATTCTCGTAAC-AGTCCCCATTTTTT
61 T-AAATCAAAGTT--TGCCTCTAAATAAGACAAACATGAATTCTCAT-ACTAATCCCCA-TTCTT
* * * **
331848 TCAAGATT-GGGAAC-TAAAAACA---T-TCATT
121 TCAAGATTAGGCACCATAAACACAGTCTCTCACA
* * * * *
331876 AGGATACATGACATTGATGGTTTGAG-ATCGCATGAAAAGCTATTCTTTCCA-TCATTTTTGATA
1 AGGATACATGATATTGATGCTTT-AGTTTCGCAAGAAAAGCT-TTCTTTCCACTAATTTTTG-TA
* **
331939 GAATCAAAGTTTGTCTCTAAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTCTCAA
63 -AATCAAAGTTTGCCTCT-AAATAAGACAAACATGAATTCTCATACTAATCCCCATTCTT-TCAA
*
332004 GATTAGGCACCATAAACATAGTCTTCTCACA
125 GATTAGGCACCATAAACACAGTC-TCTCACA
* ** * * * * *
332035 AGGATACACGATATTGACACTTTGGTTTCGTAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAG
1 AGGATACATGATATTGATGCTTTAGTTTCGCAAGAAAAGCTTTCTTTCCACTAATTTTTGTAAA-
* *
332100 TCTAAA-TCTGTGCCTC-AAATAAGTCAAACATGGATTCT
65 TC-AAAGT-T-TGCCTCTAAATAAGACAAACATGAATTCT
332138 AGTAATGATC
Statistics
Matches: 2421, Mismatches: 700, Indels: 581
0.65 0.19 0.16
Matches are distributed among these distances:
148 1 0.00
149 44 0.02
150 41 0.02
151 71 0.03
152 249 0.10
153 20 0.01
154 15 0.01
156 10 0.00
157 65 0.03
158 681 0.28
159 697 0.29
160 317 0.13
161 191 0.08
162 19 0.01
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.36
Consensus pattern (154 bp):
AGGATACATGATATTGATGCTTTAGTTTCGCAAGAAAAGCTTTCTTTCCACTAATTTTTGTAAAT
CAAAGTTTGCCTCTAAATAAGACAAACATGAATTCTCATACTAATCCCCATTCTTTCAAGATTAG
GCACCATAAACACAGTCTCTCACA
Found at i:331570 original size:947 final size:947
Alignment explanation
Indices: 327958--332701 Score: 6059
Period size: 947 Copynumber: 5.0 Consensus size: 947
327948 AGTCTTCATC
*
327958 ATTTCCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTTATCCCTTAA
1 ATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTTATCCCTTAA
*
328023 ATAAGGTAAACATTGATTCTCGTAACAATCTCCATTTTTTTCAAGATTGGGAACTAAAAACACAA
66 ATAAGGTAAACATTGATTCTCGTAACAATCTCCATTTTTTTCAAGATTGGGAAC-CAAAACACAA
* * * * * * *
328088 TCCCATCATTAGGATGCATGACATTGATGCTTTG-GTGTTGCAAGAAAAACTTTTCTTTCAACCG
130 T----TCATTAGGATGCATGACATTGATGCTTTGAG-ATCGCATGAAAAGCTATTCTTTCCACCA
* ** * *
328152 TTTTTGTTAGAATCAAAGTTTGTCTCTTTAATATGATAAACATGAATTGTCATACTAATCCCCAT
190 TTTTTGATAGAATCAAAGTTTGTCTCTAAAATAAGATAAACATGAATAGTCATACTAATCCCCA-
* * * *
328217 TTTCTTTTCAGGATTAGGCACCGCAAACATAGTCTTCTCATAAGGATATACGATATTGACGCTTT
254 -TTCTTCTCAAGATTAGGCACCACAAACATAGTCTTCTCATAAGGATACACGATATTGACGCTTT
* * * * * * ** *
328282 AGTTTTGCAAGAAAGGCTTTCTT-CCACCAATTTTTGTTAAGTCTAAGCCCGTGCCTTGAATGAG
318 GGTTTCGTAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTCTGTGCCTCAAATAAG
* * * *
328346 TCAAACATGGATTCTAGTAATGATCTTCATTAATTTTGTGATTAGGCACTATAAACAGATTCTCC
383 TCAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGACACAATAAACACATTCTCC
* ** * * * * * * * * *
328411 TCCTTACTATAAATGATATTGATGAATTTATTTTGCATGGAAATGTTTCCTTTACCTTATTCTCC
448 TCATTAGGATAAATGATATTCATCATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCC
* * * * * *
328476 TTAAAATCAAAGTTCATCCTTTAAAAAAGGCAAGCATTGATTCTCGTAACAGTCCCCATTTTTTT
513 TTAAAATCAAAATTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAATCTCCATTCTTTT
* * * **
328541 CAAGATTGGGAACC-AAAA-GC-A----TTCATTAGGATACATGACATTGATGCTTTAAG-ACCG
578 CAAGATTAGGAACCAAAAACACAATCCCTTCATTAGGATACATGACATTGATGCTTT-GGTGTCG
* * * * * *
328598 CATGAAAAGCTATTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTAAAATAAGACAAAC
642 CAAGAAAAGCTTTTCTTTCAACCGTTTTTGTTAGAATCAAAGTTTGTCTCTATAATAAGACAAAC
* * * *
328663 ATGAATAGTCATACTAATCCCCAATCTTCTCAAGATTAGGCACCACAAACATAGTCTTCTCATAA
707 ATGAATTGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCACAAACATAGTCTTCTCATAA
** * * ** *
328728 GGATACACGATATTGATG-TTTTGGTTTCGTAAGAAAAGCTTTCTTCCTGCTAATTTTTGTAAAG
772 GGATACACGATATTGATGCTTTACGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAG
* * * * * *
328792 TCGAAGTCTTTGCCTCAAATAAGTCAAATATGGAATCTAGTAATGATCTTCATTCA--TTCTG--
837 TCTAAGTCTGTGCCTCAAATGAGTCAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGAT
* *
328853 T--G-AT-TAAACACATTCTCCTCATTAGGATAAATGATATTCATC
902 TAGGCATATAAACACATTCTCCTCATTAGGATAAATGATATTGATG
*
328895 ATTTTCTTTTGCATGGAAATCTTTTCTTTGCCC-ATTTATCCTTAAAATCAGAATTTATCCCTTA
1 ATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTT-TCCTTAAAATCAAAATTTATCCCTTA
* *
328959 AATAAGGTAAACATTGATTCTCGTAACAATCTCCATTCTTTTCAAGATTTGGAACCAAAAACACA
65 AATAAGGTAAACATTGATTCTCGTAACAATCTCCATTTTTTTCAAGATTGGGAACC-AAAACACA
* * * * * * *
329024 ATCCCTTCATTAGGATGCATGACATTGATGCTTTG-GCGTTGCAAGAACAGTTTTTCTTTCAACC
129 A----TTCATTAGGATGCATGACATTGATGCTTTGAG-ATCGCATGAAAAGCTATTCTTTCCACC
* * ** * *
329088 GTTTTTGTTAGAATCAAAGTTTGTCTCTTTAATAAGATAAACATGAATTGTCATACTAATCCCAA
189 ATTTTTGATAGAATCAAAGTTTGTCTCTAAAATAAGATAAACATGAATAGTCATACTAATCCCCA
* * * * **
329153 TTTTCTTTTCAGGATTAGGCACAACAAACATAGTCTTCTCATAGGGATACATTATATTGACGCTT
254 --TTCTTCTCAAGATTAGGCACCACAAACATAGTCTTCTCATAAGGATACACGATATTGACGCTT
** * * * * *
329218 TACTTTTGCT-AGAAAGTCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTCCGTGCCTCGAATG
317 TGGTTTCG-TAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTCTGTGCCTCAAATA
* * * *
329282 AGTCAAACATGGATTCTAGTAATGATCTTCAATCATTTTGTGATTAGGCACTATAAACAGATTCT
381 AGTCAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGACACAATAAACACATTCT
* ** * * * * * * * *
329347 CCTCCTTACTATAAATGATATTGATGAATTTATTTTGCATGGAAATGTTTCCTTTACCTTATTTT
446 CCTCATTAGGATAAATGATATTCATCATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTT
* * * * * * *
329412 CCTTAAAATCAAAGTTCATCCTTTAAAAAAGGCAAGCATTGATTATCGTAACAGTCCCCATTTTT
511 CCTTAAAATCAAAATTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAATCTCCATTCTT
* * *
329477 TTCAAGATTGGGGACC-AAAA-AC-A----TTCATTAGGATACATGACATTGATGCTTTGAG-AT
576 TTCAAGATTAGGAACCAAAAACACAATCCCTTCATTAGGATACATGACATTGATGCTTTG-GTGT
* * * * * * *
329534 CGCATGAAAAGCTATTCTTTCCACCATTTTTGATAGAATCAAAGTTTGCCTCTAAAATAAGACAA
640 CGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGTTAGAATCAAAGTTTGTCTCTATAATAAGACAA
* ** * *
329599 ACATGAATTGTCATACTAATCCCCATTCTTCTCAAAATTAGGCACCATAAACATAGTCTTCTCAC
705 ACATGAATTGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCACAAACATAGTCTTCTCAT
* * * *
329664 AAGGATACAGGATATTGATGCTTTA-GTTTCGTAAGAAAGGCTTTCTTTCCACTAATTTTTGTAA
770 AAGGATACACGATATTGATGCTTTACGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAA
* * *
329728 AGTCTAAGTCTTTGCCTCAAATAAGTCAAACATGGATTCTAGTATTGATCTTCATTCATTTTGTG
835 AGTCTAAGTCTGTGCCTCAAATGAGTCAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTG
* * * * *
329793 ATTAGACAAAATAAACACATTCTCCACATTAGGATAAATGATATTCATC
900 ATTAGGC-ATATAAACACATTCTCCTCATTAGGATAAATGATATTGATG
*
329842 ATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTTATCCCTCAA
1 ATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTTATCCCTTAA
* **
329907 ATAAGGTAAACGTTGATTCTCGTAACAATCTCCATTCCTTTCAAGATTGGGAACCAAAAGCACAA
66 ATAAGGTAAACATTGATTCTCGTAACAATCTCCATTTTTTTCAAGATTGGGAACCAAAA-CACAA
329972 TCCCTTCATTAGGATGCATGACATTGATGCTTTGAGATCGCATGAAAAGCTATTCTTTCCACCAT
130 ----TTCATTAGGATGCATGACATTGATGCTTTGAGATCGCATGAAAAGCTATTCTTTCCACCA-
*
330037 TTTTTGATAGAATCAAAGTTTGTCTCTAAAATAAGACAAACATGAATAGTCATACTAATCCCCAT
190 TTTTTGATAGAATCAAAGTTTGTCTCTAAAATAAGATAAACATGAATAGTCATACTAATCCCCAT
330102 TCTTCTCAAGATTAGGCACCACAAACATAGTCTTCTCATAAGGATACACGATATTGACGCTTTGG
255 TCTTCTCAAGATTAGGCACCACAAACATAGTCTTCTCATAAGGATACACGATATTGACGCTTTGG
* * * *
330167 TTTCATAAGAAAGGCTTTCTT-CCAGCTAATTTTTGTAAAGTCTAAGTGTTTGCCTCAAATAAGT
320 TTTCGTAAGAAAGGCTTTCTTCCCA-CCAATTTTTGTAAAGTCTAAGTCTGTGCCTCAAATAAGT
* * * * *
330231 CAAACATGGAATCTGGTAATGATCTTCATTTATTCTGTGTTTAGACACAATAAACACATTCTCCT
384 CAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGACACAATAAACACATTCTCCT
*
330296 CATTAGGATAAATGATATTCATCATTTTCTTTTGCATGGAAATCTTTTCTTTGTCCTATTTTCCT
449 CATTAGGATAAATGATATTCATCATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCT
* * * * *
330361 TAAAATC-AAATTTATCCCTTAAATATGGTAAACATTGATTCTTGTAACAATCTCCATTCTTTTC
514 TAAAATCAAAATTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAATCTCCATTCTTTTC
* * *
330425 AAGATTCGGAACCAAAAACACAATCCCTTCATTAGGATGCATGACATTGATGCTTTGGTGTTGCA
579 AAGATTAGGAACCAAAAACACAATCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCA
* * *
330490 AGAAAAGCTTTTCTTTCAACCGTTTTTGTTAGAATCAAAGCTTGTCTCTGTAATAAGATAAACAT
644 AGAAAAGCTTTTCTTTCAACCGTTTTTGTTAGAATCAAAGTTTGTCTCTATAATAAGACAAACAT
* * * * * *
330555 GGATTGTCATACTAATCCCCAATTTCTTTTCAGGATTAGGCACAATAGATATAGTCTTCTCATAG
709 GAATTGTCATACTAATCCCC-A-TTCTTTTCAGGATTAGGCACCACAAACATAGTCTTCTCATAA
* * *
330620 GGATACACGATATTGACGCTTTACG-TTGGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAG
772 GGATACACGATATTGATGCTTTACGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAG
* * *
330684 TCTAAATCCGTGCCTCGAATGAGTCAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGAT
837 TCTAAGTCTGTGCCTCAAATGAGTCAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGAT
* * **
330749 TAGGCACTATAAACAGATTCTCCTCGTTACTATAAATGATATTGATG
902 TAGGCA-TATAAACACATTCTCCTCATTAGGATAAATGATATTGATG
* * * * * * * * *
330796 AATTTATTTTGCATGGAAATGTTTCCTTTACCTTATTTTCCTTAAAATCAAAGTTCATCCTTTAA
1 ATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTTATCCCTTAA
* * * * * * *
330861 AAAAGGCAAGCATTGATTCTCGTAACAGTCCCCATTTTTTTCCAGATTGGGGACCAAAA-AC-AT
66 ATAAGGTAAACATTGATTCTCGTAACAATCTCCATTTTTTTCAAGATTGGGAACCAAAACACAAT
*
330924 TCATTAGGATACATGACATTGATGCTTTGAGATCGCATGAAAAGCTATTCTTTCCACCATTTTTG
131 TCATTAGGATGCATGACATTGATGCTTTGAGATCGCATGAAAAGCTATTCTTTCCACCATTTTTG
*
330989 ATAGAATCAAAGTTTGTCTCCAAAATAAGATAAACATGAATAGTCATACTAATCCCCATTCTTCT
196 ATAGAATCAAAGTTTGTCTCTAAAATAAGATAAACATGAATAGTCATACTAATCCCCATTCTTCT
* *
331054 CAAGATTAGGCACCACAAACATAGTCTTCTCATAAGGATACAGGATATTGACGCTTTGGTTACGT
261 CAAGATTAGGCACCACAAACATAGTCTTCTCATAAGGATACACGATATTGACGCTTTGGTTTCGT
* * * * *
331119 AAGAAAAGCTTTCTTCCCACTAATTTTTGTAAAGTCTAAGTCTTTGCCTCAAATAAGTTAAACTT
326 AAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTCTGTGCCTCAAATAAGTCAAACAT
331184 GGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGACACAATAAACACATTCTCCTCATTAGG
391 GGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGACACAATAAACACATTCTCCTCATTAGG
* *
331249 ATAAATGATATTCATCATTTTCTTTTACAAGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATC
456 ATAAATGATATTCATCATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATC
* * * * *
331314 AAAATTTATCCCTTAAATAAGGTAAACATTGATTCTCATAACAATCTCCATTATTTTCAAGATTA
521 AAAATTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAATCTCCATTCTTTTCAAGATTA
* * *
331379 GGAACCAAAAACACAATCCCTTTATTAGGATGCATGACATTGATGCTTTGGTGTTGCAAGAAAAG
586 GGAACCAAAAACACAATCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAG
* * *
331444 CTTTTCTTTCAACCGTTTTTGTTAGAATCAAAGTTTGTCTCTTTAATAAGATAAATATGAATTGT
651 CTTTTCTTTCAACCGTTTTTGTTAGAATCAAAGTTTGTCTCTATAATAAGACAAACATGAATTGT
* * *
331509 CATACTAATCCCCATTTTCTTTTCAGGATTAGGCACAACAAACATAGTCTTCTCGTAGGGATACA
716 CATACTAATCCCCA--TTCTTTTCAGGATTAGGCACCACAAACATAGTCTTCTCATAAGGATACA
* * *
331574 CGATTTTGACGCTTTAC-TTTTGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGT
779 CGATATTGATGCTTTACGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGT
* *
331638 CCGTGCCTCGAATGAGTCAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCAC
844 CTGTGCCTCAAATGAGTCAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCA-
* * **
331703 TATAAACAGATTCTCCTCGTTACTATAAATGATATTGATG
908 TATAAACACATTCTCCTCATTAGGATAAATGATATTGATG
* * * * * * * * * *
331743 AATTTATTTTGCATGGAAATGTTTCCTTTACCTTATTTTCCTTAAAATTAAAGTTCATCCTTTAA
1 ATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTTATCCCTTAA
* * * * * * *
331808 AAAAGGCAAGCATTAATTCTCGTAACAGTCCCCATTTTTTTCAAGATTGGGAACTAAAA-AC-AT
66 ATAAGGTAAACATTGATTCTCGTAACAATCTCCATTTTTTTCAAGATTGGGAACCAAAACACAAT
* * *
331871 TCATTAGGATACATGACATTGATGGTTTGAGATCGCATGAAAAGCTATTCTTTCCATCATTTTTG
131 TCATTAGGATGCATGACATTGATGCTTTGAGATCGCATGAAAAGCTATTCTTTCCACCATTTTTG
*
331936 ATAGAATCAAAGTTTGTCTCTAAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTCT
196 ATAGAATCAAAGTTTGTCTCTAAAATAAGATAAACATGAATAGTCATACTAATCCCCATTCTTCT
* * *
332001 CAAGATTAGGCACCATAAACATAGTCTTCTCACAAGGATACACGATATTGACACTTTGGTTTCGT
261 CAAGATTAGGCACCACAAACATAGTCTTCTCATAAGGATACACGATATTGACGCTTTGGTTTCGT
*
332066 AAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAATCTGTGCCTCAAATAAGTCAAACAT
326 AAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTCTGTGCCTCAAATAAGTCAAACAT
332131 GGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGACACAATAAACACATTCTCCTCATTAGG
391 GGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGACACAATAAACACATTCTCCTCATTAGG
*
332196 ATAAATGATATTCATCATTTTCTTCTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATC
456 ATAAATGATATTCATCATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATC
* * * * *
332261 AAAATTCATCCCTAAAATATGACAAGCATCGATTCTCGTAACAGA-CTCCATTCCTTTCAAGATT
521 AAAATTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACA-ATCTCCATTCTTTTCAAGATT
* * * * * * * *
332325 AGGAACTAAGAACACATTCCCTTTAGTAAGATACATGTCATTGATGCTTTTGTGTCAG-AAGAAA
585 AGGAACCAAAAACACAATCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTC-GCAAGAAA
* * *
332389 AGCTTTTCTTTCAACCGTTTTT-TATAGAATCAATA-TTTGTCTCTTTAGTAAGACAAACGTGAA
649 AGCTTTTCTTTCAACCGTTTTTGT-TAGAATCAA-AGTTTGTCTCTATAATAAGACAAACATGAA
** * *
332452 TAATCATACTAGTGCCCATTCTTTTCAGGATTAGGCACCACAAACATAGTCTTCTCATTAA-GAT
712 TTGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCACAAACATAGTCTTCTCA-TAAGGAT
* * * * *
332516 AGACGATATTGATGCTTT-GGTTTCGCAAGATAGGCTTTCTTCCCTCCAATTTTTGTAAAGTCCA
776 ACACGATATTGATGCTTTACGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTA
* * * *
332580 AGTTTGTGCCTCAAATGAGTCAAACATGGATTCTAGCAATGATCTACATTCATTTTGTGATTAGA
841 AGTCTGTGCCTCAAATGAGTCAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGG
* *
332645 CATAATAAACACATTCTCTTCATTAGGATAAATGCTATTGATG
906 CAT-ATAAACACATTCTCCTCATTAGGATAAATGATATTGATG
332688 ATTTTCTTTTGCAT
1 ATTTTCTTTTGCAT
332702 CGATTCTCCT
Statistics
Matches: 3462, Mismatches: 297, Indels: 88
0.90 0.08 0.02
Matches are distributed among these distances:
936 4 0.00
937 315 0.09
938 511 0.15
939 3 0.00
940 4 0.00
941 1 0.00
942 1 0.00
944 1 0.00
945 261 0.08
946 546 0.16
947 1346 0.39
948 67 0.02
951 2 0.00
952 109 0.03
953 2 0.00
954 288 0.08
955 1 0.00
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.36
Consensus pattern (947 bp):
ATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTTATCCCTTAA
ATAAGGTAAACATTGATTCTCGTAACAATCTCCATTTTTTTCAAGATTGGGAACCAAAACACAAT
TCATTAGGATGCATGACATTGATGCTTTGAGATCGCATGAAAAGCTATTCTTTCCACCATTTTTG
ATAGAATCAAAGTTTGTCTCTAAAATAAGATAAACATGAATAGTCATACTAATCCCCATTCTTCT
CAAGATTAGGCACCACAAACATAGTCTTCTCATAAGGATACACGATATTGACGCTTTGGTTTCGT
AAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTCTGTGCCTCAAATAAGTCAAACAT
GGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGACACAATAAACACATTCTCCTCATTAGG
ATAAATGATATTCATCATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATC
AAAATTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAATCTCCATTCTTTTCAAGATTA
GGAACCAAAAACACAATCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAG
CTTTTCTTTCAACCGTTTTTGTTAGAATCAAAGTTTGTCTCTATAATAAGACAAACATGAATTGT
CATACTAATCCCCATTCTTTTCAGGATTAGGCACCACAAACATAGTCTTCTCATAAGGATACACG
ATATTGATGCTTTACGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTCT
GTGCCTCAAATGAGTCAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCATAT
AAACACATTCTCCTCATTAGGATAAATGATATTGATG
Found at i:333051 original size:412 final size:412
Alignment explanation
Indices: 332286--333113 Score: 1160
Period size: 412 Copynumber: 2.0 Consensus size: 412
332276 AATATGACAA
* * * *
332286 GCATCGATTCTCGTAACAGACTCCATTCCTTTCAAGATTAGGAACTAAGAACACATTCCCTTTAG
1 GCATCGATTCTCCTAACAGACACCATTCCTTTCAAGATTAGGAACCAAGAACACATTCCCTTCAG
* * * * *
332351 TAAGATACATGTCATTGATGCTTTTGTGTCAGAAGAAAAGCTTTTCTTTCAACCGTTTTTTATAG
66 TAAGATACATGTCATTGATGCTTTTGTGCCACAAGAAAAGCTTTTCTTTCAACCATTTTTGAAAG
* * *
332416 AATCAATATTTGTCTCTTTAGTAAGACAAACGTGAATAATCATACTAGTGCCCATTCTTTTCAGG
131 AATCAATATTTGTCTCTTTAGTAAGACAAACGTGAATAATAATACTAATCCCCATTCTTTTCAGG
* * * * * *
332481 ATTAGGCACCACAAACATAGTCTTCTCATTAAGATAGACGATATTGATGCTTTGGTTTCGCAAGA
196 ATTAGGCACCACAAACATAGACTTCACATAAAGATAAACGATATTGACGCTTTGCTTTCGCAAGA
* * * ** * *
332546 TAGGCTTTCTTCCCTCCAATTTTTGTAAAGTCCAAGTTTGTGCCTCAAATGAGTCAAACATGGAT
261 AAGGCTTTCTTCCCACCAATTTTTATAAAGTCCAAGTTCATCCCTCAAATGAGACAAACATGGAT
* * * *
332611 TCTAGCAATGATCTACATTCATTTTGTGATTAGACA-TAATAAACACATTCTCTTCATT-AGGAT
326 TCTAGAAATGATCTACATTCACTTTGTGATTAGACACT-ATAAACACATTATCCTCATTAAGG-T
*
332674 AAATGCTATTGATGATTTTCTTTT
389 AAATGATATTGATGATTTTCTTTT
* * * *
332698 GCATCGATTCTCCTAATAGTCACCATTTCTTTCAAGATTAGGAACCAAGAACATATTCCCTTCAG
1 GCATCGATTCTCCTAACAGACACCATTCCTTTCAAGATTAGGAACCAAGAACACATTCCCTTCAG
*
332763 TAAGATACATGTCATTGATGCTTTTGTGCCACAAGAAAAGCTTTTCTTTCAACTATTTTTGAAAG
66 TAAGATACATGTCATTGATGCTTTTGTGCCACAAGAAAAGCTTTTCTTTCAACCATTTTTGAAAG
* * *
332828 AATCATTATTTGTCTCTTTAGTAAGACAAATGTGAATAGTAATACTAATCCCCATTCTTCTT-AG
131 AATCAATATTTGTCTCTTTAGTAAGACAAACGTGAATAATAATACTAATCCCCATTCTT-TTCAG
** * * *
332892 GATTAGGCACCGTAAACATAGACTTCACA-AAAGGATAAATGATATTGGCGCTTTGCTTTTGCAA
195 GATTAGGCACCACAAACATAGACTTCACATAAA-GATAAACGATATTGACGCTTTGCTTTCGCAA
* *
332956 GAAAGGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTCATCCCTCAAATGAGACAAACATGG
259 GAAAGGCTTTCTTCCCACCAATTTTTATAAAGTCCAAGTTCATCCCTCAAATGAGACAAACATGG
* * *
333021 ATTCTAGAAATGATCTTCATTCACTTTGTGATTGGGCACTATAAACACATTATCCTCATTAAGGT
324 ATTCTAGAAATGATCTACATTCACTTTGTGATTAGACACTATAAACACATTATCCTCATTAAGGT
333086 AAATGATATTGATGATTTTCTTTT
389 AAATGATATTGATGATTTTCTTTT
333110 GCAT
1 GCAT
333114 GGAAATATTT
Statistics
Matches: 364, Mismatches: 48, Indels: 8
0.87 0.11 0.02
Matches are distributed among these distances:
411 2 0.01
412 356 0.98
413 6 0.02
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.36
Consensus pattern (412 bp):
GCATCGATTCTCCTAACAGACACCATTCCTTTCAAGATTAGGAACCAAGAACACATTCCCTTCAG
TAAGATACATGTCATTGATGCTTTTGTGCCACAAGAAAAGCTTTTCTTTCAACCATTTTTGAAAG
AATCAATATTTGTCTCTTTAGTAAGACAAACGTGAATAATAATACTAATCCCCATTCTTTTCAGG
ATTAGGCACCACAAACATAGACTTCACATAAAGATAAACGATATTGACGCTTTGCTTTCGCAAGA
AAGGCTTTCTTCCCACCAATTTTTATAAAGTCCAAGTTCATCCCTCAAATGAGACAAACATGGAT
TCTAGAAATGATCTACATTCACTTTGTGATTAGACACTATAAACACATTATCCTCATTAAGGTAA
ATGATATTGATGATTTTCTTTT
Found at i:333614 original size:475 final size:474
Alignment explanation
Indices: 332698--334349 Score: 2007
Period size: 475 Copynumber: 3.5 Consensus size: 474
332688 ATTTTCTTTT
* * * * *
332698 GCATCGATTCTCCTAATAGTCACC-ATTTCTTTCAAGATTAGGAACCAAGAACATATTCCCTTCA
1 GCATTGATTCTCATAATAGTCTCCAATCT-TTTCAAGATTAGGAACCAAAAACATATTCCCTTCA
* * * * * * *
332762 GTAAGATACATGTCATTGATGCTTTTGTGCCACAAGAAAAGCTTTTCTTTCAACTATTTTTGAAA
65 ATAGGATACATGACATTGATGC-TTTGTGTCGCAAGAAAAGCTTTTCTTTCAACCATTTTTGATA
* * ** * *
332827 GAATCATTA-TTTGTCTCTTTAGTAAGACAAATGTGAATAGTAATACTAATCCCCATTCTTCTT-
129 GAATCA-AAGTTTGTCTCTTTAATAAGACAAACATGAATAGTCATACTAATCCCAATTCTT-TTC
** * * * * * * **
332890 AGGATTAGGCACCGTAAACATAGACTTCACAAAAGGATAAATGATATTGGCGCTTTGCTTTTGCA
192 AGGATTAGGCACCACAAACATAGTCTTCTCATAAGGATACATGATATTGACGCTTTGGTTTCACA
*
332955 AGAAAGGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTCATCCCTCAAATGAGACAAACATG
257 AGAAAGGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTCATGCCTCAAATGAGACAAACATG
* * * *
333020 GATTCTAGAAATGATCTTCATTCACTTTGTGATTGGGCACTATAAACACATTATCCTCATTAAGG
322 GATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAAGG
* *
333085 TAAATGATATTGATGATTTTCTTTTGCATGGAAATATTTCCTTTGCCTTATTTTCCTTAAAATCA
387 TAAATGATATTGATGATTTTCTTTTGCATGGAAA-ATTTTCTTTGCCCTATTTTCCTTAAAATCA
* *
333150 AAGTTCATCCCGAAAATAAGGTAA
451 AAGTTCATCCCTAAAATAAGGCAA
* * * *
333174 GCATTGATTCTCATAACAATCTCCACTCTTTTCAAGATTAGGAACCAAAAACACATTCCCTTCAA
1 GCATTGATTCTCATAATAGTCTCCAATCTTTTCAAGATTAGGAACCAAAAACATATTCCCTTCAA
* * * * *
333239 TAGGATACATGGCACTGATGCTTTAGTGTTGCAAGAAAAGCTTTTTTTTCAACCATTTTTGTTAG
66 TAGGATACATGACATTGATGCTTT-GTGTCGCAAGAAAAGCTTTTCTTTCAACCATTTTTGATAG
* * *
333304 AATCAAAGTTTGTCTCTTCAATAGGACAAACATGAATCGTCATA-TAATCACC-ATTCTTTTCAG
130 AATCAAAGTTTGTCTCTTTAATAAGACAAACATGAATAGTCATACTAATC-CCAATTCTTTTCAG
* * *
333367 GATTAGGCACCATAAACATAGTCTTCTTATAAGGATACATGATATTGATGCTTTGGTTTCACAAG
194 GATTAGGCACCACAAACATAGTCTTCTCATAAGGATACATGATATTGACGCTTTGGTTTCACAAG
** *
333432 AAAGGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTTGTGCCTCAAATGAGACAAACAAGGA
259 AAAGGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTCATGCCTCAAATGAGACAAACATGGA
* * *
333497 TTCTAGTAATGACCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCAGTAGGGTA
324 TTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAAGGTA
* * *
333562 AATGATATTGATGATTTCCTTTTGTATGGAAACATTTTCTTTACCCTATTTTCCTTAAAATCAAA
389 AATGATATTGATGATTTTCTTTTGCATGGAAA-ATTTTCTTTGCCCTATTTTCCTTAAAATCAAA
* * * * * *
333627 TTTTACCCCTTAAATATGACAA
453 GTTCATCCCTAAAATAAGGCAA
* * * *
333649 GCATCGATTCTCGTAATAGTCTCCAATCTTTTCAAGATTGGGAACCAATAACA-ATTCCCTT-AA
1 GCATTGATTCTCATAATAGTCTCCAATCTTTTCAAGATTAGGAACCAAAAACATATTCCCTTCAA
* * * * * *
333712 TTAGGATACATGAAATTAATGCTTTGGTATCGAAAGAAAATCTTTTCTTTCAA-CAGTTTTTGTT
66 -TAGGATACATGACATTGATGCTTT-GTGTCGCAAGAAAAGCTTTTCTTTCAACCA-TTTTTGAT
* * ** * * *
333776 AGAATAAAAGTTTGTCTCTTTAATAAAATGAACATGAATAGTCATATTAATCCCTATTCTCTTCA
128 AGAATCAAAGTTTGTCTCTTTAATAAGACAAACATGAATAGTCATACTAATCCCAATTCTTTTCA
* * **
333841 GGATTAGGCACCACATACATAGTTTTCTCATAAGGATACACAATATTGACGCTTTGGTTTCACAA
193 GGATTAGGCACCACAAACATAGTCTTCTCATAAGGATACATGATATTGACGCTTTGGTTTCACAA
* * * * *
333906 GAAAGGCTTTTTTCTCACCAATTTTTGTAATGTCTAAGTCCATGCCTCAAATGAGTCAAACATGG
258 GAAAGGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTCATGCCTCAAATGAGACAAACATGG
* ***
333971 ATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACAATCTCCTCATTACCAT
323 ATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAAGGT
* * *
334036 AATTGATATTGATGATTTTATTTTGCAT-GAAAATGTTTCTTTTGCCCTATTTTTCTTAAAATCA
388 AAATGATATTGATGATTTTCTTTTGCATGGAAAAT-TTTC-TTTGCCCTATTTTCCTTAAAATCA
334100 AAGTTCATCCCTTAAAA-AAGGCAA
451 AAGTTCATCCC-TAAAATAAGGCAA
* * * * *
334124 GCATTGATTCTCCTAATAGTCCCCATTCTTCTT-AAGATTGGGAACCAAAAACATATTCCCGTCA
1 GCATTGATTCTCATAATAGTCTCCAATCTT-TTCAAGATTAGGAACCAAAAACATATTCCCTTCA
* * * * * * * *
334188 TTAGGATACATGATATTGACGCTTTGGGATCACCAG-AAAGCTATTCTTTCCACCATTTTTGATA
65 ATAGGATACATGACATTGATGCTTTGTG-TCGCAAGAAAAGCTTTTCTTTCAACCATTTTTGATA
* * *
334252 GAATCAAAGCTTGTGTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCAAGTT-TTTTCA
129 GAATCAAAGTTTGTCTCTTTAATAAGACAAACATGAATAGTCATACTAATCCCAA-TTCTTTTCA
*
334316 AGATTAGGCACCACAAACATAGTCTTCTCATAAG
193 GGATTAGGCACCACAAACATAGTCTTCTCATAAG
334350 TGTAGACACC
Statistics
Matches: 1004, Mismatches: 154, Indels: 37
0.84 0.13 0.03
Matches are distributed among these distances:
473 6 0.01
474 109 0.11
475 705 0.70
476 181 0.18
477 3 0.00
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.35
Consensus pattern (474 bp):
GCATTGATTCTCATAATAGTCTCCAATCTTTTCAAGATTAGGAACCAAAAACATATTCCCTTCAA
TAGGATACATGACATTGATGCTTTGTGTCGCAAGAAAAGCTTTTCTTTCAACCATTTTTGATAGA
ATCAAAGTTTGTCTCTTTAATAAGACAAACATGAATAGTCATACTAATCCCAATTCTTTTCAGGA
TTAGGCACCACAAACATAGTCTTCTCATAAGGATACATGATATTGACGCTTTGGTTTCACAAGAA
AGGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATT
CTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAAGGTAAA
TGATATTGATGATTTTCTTTTGCATGGAAAATTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTT
CATCCCTAAAATAAGGCAA
Found at i:334605 original size:27 final size:27
Alignment explanation
Indices: 334574--334649 Score: 107
Period size: 27 Copynumber: 2.8 Consensus size: 27
334564 TATCGATACA
334574 ATCGGGGATACTCCAACCCCGTTAATC
1 ATCGGGGATACTCCAACCCCGTTAATC
* *
334601 ATCGGGGATACTCCAACCCCGTTATTT
1 ATCGGGGATACTCCAACCCCGTTAATC
* *
334628 TTGAGGGGATACTCCAACCCCG
1 AT-CGGGGATACTCCAACCCCG
334650 GTTTTATCGC
Statistics
Matches: 44, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
27 26 0.59
28 18 0.41
ACGTcount: A:0.24, C:0.32, G:0.21, T:0.24
Consensus pattern (27 bp):
ATCGGGGATACTCCAACCCCGTTAATC
Found at i:334717 original size:52 final size:53
Alignment explanation
Indices: 334632--334805 Score: 146
Period size: 52 Copynumber: 3.3 Consensus size: 53
334622 TTATTTTTGA
* *
334632 GGGGATACTCCAACCCCGGTTTTA--TCGCTAAAACACTAATTTTTCCTCAATC
1 GGGGATACTCCAACCTCGGTTTTATTTC-CAAAAACACTAATTTTTCCTCAATC
* * * *
334684 GGGGATACTCCAATCTCGGTTTTATTTTC-AAAAC-GTCAA-TTTTCCTTTAATC
1 GGGGATACTCCAACCTCGGTTTTATTTCCAAAAACACT-AATTTTTCC-TCAATC
* * * * * *
334736 GGGGATATTCCAA-CTCCGATTCTATTTCCAAAAATACCAATTTTT-CACAATC
1 GGGGATACTCCAACCT-CGGTTTTATTTCCAAAAACACTAATTTTTCCTCAATC
*
334788 GAGGATACTCCAACCTCG
1 GGGGATACTCCAACCTCG
334806 TTATTTCATC
Statistics
Matches: 97, Mismatches: 16, Indels: 18
0.74 0.12 0.14
Matches are distributed among these distances:
51 9 0.09
52 73 0.75
53 10 0.10
54 5 0.05
ACGTcount: A:0.28, C:0.26, G:0.13, T:0.33
Consensus pattern (53 bp):
GGGGATACTCCAACCTCGGTTTTATTTCCAAAAACACTAATTTTTCCTCAATC
Found at i:334821 original size:28 final size:28
Alignment explanation
Indices: 334785--334861 Score: 82
Period size: 28 Copynumber: 2.8 Consensus size: 28
334775 ATTTTTCACA
* * *
334785 ATCGAGGATACTCCAACCTCGTTATTTC
1 ATCGGGGATACTCCAACCCCGTTACTTC
*
334813 ATCGGGGATACTCTAACCCCGTTACTTC
1 ATCGGGGATACTCCAACCCCGTTACTTC
*** *
334841 CGAGGGGATACTCCAATCCCG
1 ATCGGGGATACTCCAACCCCG
334862 ATTTTTTTTT
Statistics
Matches: 40, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
28 40 1.00
ACGTcount: A:0.23, C:0.31, G:0.19, T:0.26
Consensus pattern (28 bp):
ATCGGGGATACTCCAACCCCGTTACTTC
Found at i:339762 original size:1 final size:1
Alignment explanation
Indices: 339758--339832 Score: 60
Period size: 1 Copynumber: 75.0 Consensus size: 1
339748 AAGGTGATGG
* * * * * * * * *
339758 AAAAAAAAAAAAACAAACAAACAAAAAAAACACACAAAAAAAAACAAAAAAACAAAAAAAAAACA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
*
339823 CAAAAAAAAA
1 AAAAAAAAAA
339833 TGCAAAGGCA
Statistics
Matches: 54, Mismatches: 20, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
1 54 1.00
ACGTcount: A:0.87, C:0.13, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:339797 original size:31 final size:31
Alignment explanation
Indices: 339762--339832 Score: 124
Period size: 31 Copynumber: 2.3 Consensus size: 31
339752 TGATGGAAAA
* *
339762 AAAAAAAAACAAACAAACAAAAAAAACACAC
1 AAAAAAAAACAAAAAAACAAAAAAAAAACAC
339793 AAAAAAAAACAAAAAAACAAAAAAAAAACAC
1 AAAAAAAAACAAAAAAACAAAAAAAAAACAC
339824 AAAAAAAAA
1 AAAAAAAAA
339833 TGCAAAGGCA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 38 1.00
ACGTcount: A:0.86, C:0.14, G:0.00, T:0.00
Consensus pattern (31 bp):
AAAAAAAAACAAAAAAACAAAAAAAAAACAC
Found at i:339838 original size:12 final size:12
Alignment explanation
Indices: 339758--339832 Score: 72
Period size: 13 Copynumber: 6.6 Consensus size: 12
339748 AAGGTGATGG
339758 AAAAAAA-A-AA
1 AAAAAAACACAA
* *
339768 AAACAAACAAACA
1 AAAAAAACACA-A
339781 AAAAAAACACACA
1 AAAAAAACACA-A
339794 AAAAAAA-AC--
1 AAAAAAACACAA
339803 AAAAAAACA-AA
1 AAAAAAACACAA
339814 AAAAAAACACAA
1 AAAAAAACACAA
339826 AAAAAAA
1 AAAAAAA
339833 TGCAAAGGCA
Statistics
Matches: 55, Mismatches: 3, Indels: 12
0.79 0.04 0.17
Matches are distributed among these distances:
9 7 0.13
10 7 0.13
11 10 0.18
12 12 0.22
13 19 0.35
ACGTcount: A:0.87, C:0.13, G:0.00, T:0.00
Consensus pattern (12 bp):
AAAAAAACACAA
Found at i:340107 original size:20 final size:18
Alignment explanation
Indices: 340068--340108 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 18
340058 TGTTCTTTTT
*
340068 CAAAAAAAAAAAACAAAA
1 CAAAAAAAAAAAAAAAAA
340086 CAAAAAAGAAAAAAAAAGAA
1 CAAAAAA-AAAAAAAAA-AA
340106 CAA
1 CAA
340109 CCCCTTTTCA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 7 0.35
19 8 0.40
20 5 0.25
ACGTcount: A:0.85, C:0.10, G:0.05, T:0.00
Consensus pattern (18 bp):
CAAAAAAAAAAAAAAAAA
Found at i:341164 original size:55 final size:55
Alignment explanation
Indices: 341008--341513 Score: 579
Period size: 55 Copynumber: 9.0 Consensus size: 55
340998 TTCTTCAAAT
* * ** *
341008 ACCTTTTAAAGCCCACACAGGTTGGTGGCATTTTTTAGTCCTCAAAGAGCAGGATGC
1 ACCTCTTAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGA--C
* * * * *
341065 TTTTTCTTTTTAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCCCAAAGAGCAGGAC
1 ----ACCTCTTAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGAC
* *
341124 ACCTCTTAAAGCCCACACAAGTTGGTGGCGCCTTCCAGTCCTCAAAGAGCAGGAC
1 ACCTCTTAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGAC
*
341179 ACCTCTTAAAGCCCACACAAGTTGGTGGCA-TTTTCCAGTCCTCAAAGAGCAGGAC
1 ACCTCTTAAAGCCCACACAAGTTGGTGGCACCTTT-CAGTCCTCAAAGAGCAGGAC
* *
341234 ACCT-TTCAAAGCCCACATAAGTTGGTGGCA-TTTTCCAGTCCTCAAAGAGCAGGAC
1 ACCTCTT-AAAGCCCACACAAGTTGGTGGCACCTTT-CAGTCCTCAAAGAGCAGGAC
* * **
341289 ACCTTTTAAAGCCCACACAGGTTGGTGGCATTTTTCAGTCCTCAAAGAGCAGGATGC
1 ACCTCTTAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGA--C
** * *
341346 TTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCCCAAAGAGCAGGAC
1 ---ACCTCTT-AAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGAC
341405 ACCTCTTAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGAC
1 ACCTCTTAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGAC
* * * * * *
341460 GCCT-TTCAAAGCCCACACGAGTTGGTGGCACTTTTTACTCCTCAATGAGCAGGA
1 ACCTCTT-AAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGA
341514 TACAGTTTAT
Statistics
Matches: 399, Mismatches: 35, Indels: 28
0.86 0.08 0.06
Matches are distributed among these distances:
54 6 0.02
55 284 0.71
56 10 0.03
57 1 0.00
59 2 0.01
60 5 0.01
61 91 0.23
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (55 bp):
ACCTCTTAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGAC
Found at i:341409 original size:226 final size:221
Alignment explanation
Indices: 341008--341513 Score: 669
Period size: 226 Copynumber: 2.2 Consensus size: 221
340998 TTCTTCAAAT
* * * *
341008 ACCTTTTAAAGCCCACACAGGTTGGTGGCATTTTTTAGTCCTCAAAGAGCAGGATGCTTTTTCTT
1 ACCTTTCAAAGCCCACACAAGTTGGTGGCA-TTTTTAGTCCTCAAAGAGCAGGA-GC---TACCT
341073 TTTAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCCCAAAGAGCAGGACACCTCTTAAAGCCC
61 TTTAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCCCAAAGAGCAGGACACCTCTTAAAGCCC
* *
341138 ACACAAGTTGGTGGCGCCTTCCAGTCCTCAAAGAGCAGGACACCTCTTAAAGCCCACACAAGTTG
126 ACACAAGTTGGTGGCACCTTCCAGTCCCCAAAGAGCAGGACACCTCTTAAAGCCCACACAAGTTG
*
341203 GTGGCA-TTTTCCAGTCCTCAAAGAGCAGGAC
191 GTGGCACCTTT-CAGTCCTCAAAGAGCAGGAC
* *
341234 ACCTTTCAAAGCCCACATAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGA-C-ACCTTTTA
1 ACCTTTCAAAGCCCACACAAGTTGGTGGCATTTT-TAGTCCTCAAAGAGCAGGAGCTACCTTTTA
* * * ** *
341297 AAGCCCACACAGGTTGGTGGCA-TTTTTCAGTCCTCAAAGAGCAGGATGCTTTTTCTTTTCAAAG
65 AAGCCCACACAAGTTGGTGGCACCTTTT-AGTCCCCAAAGAGCAGGA--C---ACCTCTT-AAAG
*
341361 CCCACACAAGTTGGTGGCACCTTTCAGTCCCCAAAGAGCAGGACACCTCTTAAAGCCCACACAAG
123 CCCACACAAGTTGGTGGCACCTTCCAGTCCCCAAAGAGCAGGACACCTCTTAAAGCCCACACAAG
341426 TTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGAC
188 TTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGAC
* * * *
341460 GCCTTTCAAAGCCCACACGAGTTGGTGGCACTTTTTACTCCTCAATGAGCAGGA
1 ACCTTTCAAAGCCCACACAAGTTGGTGGCA-TTTTTAGTCCTCAAAGAGCAGGA
341514 TACAGTTTAT
Statistics
Matches: 248, Mismatches: 22, Indels: 20
0.86 0.08 0.07
Matches are distributed among these distances:
219 4 0.02
220 44 0.18
222 1 0.00
224 1 0.00
225 8 0.03
226 183 0.74
227 7 0.03
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (221 bp):
ACCTTTCAAAGCCCACACAAGTTGGTGGCATTTTTAGTCCTCAAAGAGCAGGAGCTACCTTTTAA
AGCCCACACAAGTTGGTGGCACCTTTTAGTCCCCAAAGAGCAGGACACCTCTTAAAGCCCACACA
AGTTGGTGGCACCTTCCAGTCCCCAAAGAGCAGGACACCTCTTAAAGCCCACACAAGTTGGTGGC
ACCTTTCAGTCCTCAAAGAGCAGGAC
Found at i:341437 original size:29 final size:28
Alignment explanation
Indices: 341357--341439 Score: 75
Period size: 27 Copynumber: 3.0 Consensus size: 28
341347 TTTTCTTTTC
341357 AAAGCCCACACAAGTTGGTGGCACCTTT
1 AAAGCCCACACAAGTTGGTGGCACCTTT
* * **
341385 -CAGTCCC-CA-AAG-AGCAGGACACCTCTT
1 AAAG-CCCACACAAGTTGGTGG-CACCT-TT
341412 AAAGCCCACACAAGTTGGTGGCACCTTT
1 AAAGCCCACACAAGTTGGTGGCACCTTT
341440 CAGTCCTCAA
Statistics
Matches: 40, Mismatches: 8, Indels: 14
0.65 0.13 0.23
Matches are distributed among these distances:
25 3 0.08
26 8 0.20
27 9 0.22
28 9 0.22
29 8 0.20
30 3 0.08
ACGTcount: A:0.29, C:0.31, G:0.20, T:0.19
Consensus pattern (28 bp):
AAAGCCCACACAAGTTGGTGGCACCTTT
Found at i:341512 original size:281 final size:281
Alignment explanation
Indices: 341008--341513 Score: 890
Period size: 281 Copynumber: 1.8 Consensus size: 281
340998 TTCTTCAAAT
*
341008 ACCTTTTAAAGCCCACACAGGTTGGTGGCATTTTTTAGTCCTCAAAGAGCAGGATGCTTTTTCTT
1 ACCTTTTAAAGCCCACACAGGTTGGTGGCATTTTTCAGTCCTCAAAGAGCAGGATGCTTTTTCTT
* *
341073 TTTAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCCCAAAGAGCAGGACACCTCTTAAAGCCC
66 TTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCCCAAAGAGCAGGACACCTCTTAAAGCCC
*
341138 ACACAAGTTGGTGGCGCCTTCCAGTCCTCAAAGAGCAGGACACCTCTTAAAGCCCACACAAGTTG
131 ACACAAGTTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACACCTCTTAAAGCCCACACAAGTTG
*
341203 GTGGCATTTTCCAGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACATAAGTTGGTGGCATTTT
196 GTGGCATTTTCCACTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACATAAGTTGGTGGCATTTT
341268 CCAGTCCTCAAAGAGCAGGAC
261 CCAGTCCTCAAAGAGCAGGAC
341289 ACCTTTTAAAGCCCACACAGGTTGGTGGCATTTTTCAGTCCTCAAAGAGCAGGATGCTTTTTCTT
1 ACCTTTTAAAGCCCACACAGGTTGGTGGCATTTTTCAGTCCTCAAAGAGCAGGATGCTTTTTCTT
341354 TTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCCCAAAGAGCAGGACACCTCTTAAAGCCC
66 TTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCCCAAAGAGCAGGACACCTCTTAAAGCCC
* * *
341419 ACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACGCCT-TTCAAAGCCCACACGAGTT
131 ACACAAGTTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACACCTCTT-AAAGCCCACACAAGTT
* *
341483 GGTGGCACTTTT-TACTCCTCAATGAGCAGGA
195 GGTGGCA-TTTTCCACTCCTCAAAGAGCAGGA
341514 TACAGTTTAT
Statistics
Matches: 213, Mismatches: 10, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
280 2 0.01
281 207 0.97
282 4 0.02
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (281 bp):
ACCTTTTAAAGCCCACACAGGTTGGTGGCATTTTTCAGTCCTCAAAGAGCAGGATGCTTTTTCTT
TTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCCCAAAGAGCAGGACACCTCTTAAAGCCC
ACACAAGTTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACACCTCTTAAAGCCCACACAAGTTG
GTGGCATTTTCCACTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACATAAGTTGGTGGCATTTT
CCAGTCCTCAAAGAGCAGGAC
Found at i:342908 original size:411 final size:412
Alignment explanation
Indices: 342097--342923 Score: 1142
Period size: 411 Copynumber: 2.0 Consensus size: 412
342087 AATATGACAA
* * * * *
342097 GCATCGATTCTCGTAACAGACTCCATTCCTTTCAAGATTACGAACTAAGAACACATTCCCTTTAG
1 GCATCAATTCTCCTAACAGACACCATTCCTTTCAAGATTACGAACCAAGAACACATTCCCTTCAG
* * * * *
342162 TAAGATACATGTCATTGATGCTTTTGTGTCAGAAGAAAAGCTTTTCTTTCAACCGTTTTTTATAG
66 TAAGATACATGTCATTGATGCTTTTGTGCCACAAGAAAAGCTTTTCTTTCAACCATTTTTGAAAG
* * *
342227 AATCAATATTTGTCTCTTTAGTAAGACAAACATGAATAATCATACTAGTGCCCATTCTTTTCAGG
131 AATCAATATTTGTCTCTTTAGTAAGACAAACATGAATAATAATACTAATCCCCATTCTTTTCAGG
* * * * *
342292 ATTAGGCACCACAAACATAGTCTTCTCATTAAGATAGACGATATTGATGCTTTGGTTTCGCAAGA
196 ATTAGGCACCACAAACATAGACTTCACATTAAGATAAACGATATTGACGCTTTGCTTTCGCAAGA
* * * * * *
342357 TAGGCTTTCTTCCCTCCAATTTTTGTAAAGTCCAAGTTTATGCCTCAAATGAGTCAAACATGGAT
261 AAGGCTTTCTTCCCACCAATTTTTATAAAGTCCAAGTTCATCCCTCAAATGAGACAAACATGGAT
* * * *
342422 TCTAGCAATGATCTACATTCATTTTGTGATTAGACATAATAAACACATTCTCTTCATTAGGATAA
326 TCTAGAAATGATCTACATTCACTTTGTGATTAGACATAATAAACACATTATCCTCATTAGGATAA
*
342487 ATGCTATTGATGATTTT-TTTT
391 ATGATATTGATGATTTTCTTTT
* * * * *
342508 GCATCAATTCTCCTAACAGTCACCATTTCTTTCAAGATTAGGAACCACGAACATATTCCCTTCAG
1 GCATCAATTCTCCTAACAGACACCATTCCTTTCAAGATTACGAACCAAGAACACATTCCCTTCAG
*
342573 TAAGATACATGTCATTGATGCTTTTGTGCCACAAGAAAAGCTTTTCTTTCAACTATTTTTGAAAG
66 TAAGATACATGTCATTGATGCTTTTGTGCCACAAGAAAAGCTTTTCTTTCAACCATTTTTGAAAG
* ** *
342638 AATCATTATTTGTCTCTTTAGTAAGACAAATGTGAATAGTAATACTAATCCCCATTCTTCTT-AG
131 AATCAATATTTGTCTCTTTAGTAAGACAAACATGAATAATAATACTAATCCCCATTCTT-TTCAG
* * * *
342702 GATTAGGCACCATAAACATAGACTTCACA-TAAGGATAAATGATATTGGCGCTTTGCTTTTGCAA
195 GATTAGGCACCACAAACATAGACTTCACATTAA-GATAAACGATATTGACGCTTTGCTTTCGCAA
* *
342766 GAAAGGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTCATCCCTCAAATGAGACAAACATGG
259 GAAAGGCTTTCTTCCCACCAATTTTTATAAAGTCCAAGTTCATCCCTCAAATGAGACAAACATGG
* * * *
342831 ATTCTAGAAATGATCTTCATTCACTTTGTGATTGGGCACT-ATAAACACATTATCCTCTTTAAGG
324 ATTCTAGAAATGATCTACATTCACTTTGTGATTAGACA-TAATAAACACATTATCCTCATT-AGG
342895 -TAAATGATATTGATGATTTTCTTTT
387 ATAAATGATATTGATGATTTTCTTTT
342920 GCAT
1 GCAT
342924 GGAAATATTT
Statistics
Matches: 362, Mismatches: 49, Indels: 9
0.86 0.12 0.02
Matches are distributed among these distances:
410 3 0.01
411 345 0.95
412 14 0.04
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (412 bp):
GCATCAATTCTCCTAACAGACACCATTCCTTTCAAGATTACGAACCAAGAACACATTCCCTTCAG
TAAGATACATGTCATTGATGCTTTTGTGCCACAAGAAAAGCTTTTCTTTCAACCATTTTTGAAAG
AATCAATATTTGTCTCTTTAGTAAGACAAACATGAATAATAATACTAATCCCCATTCTTTTCAGG
ATTAGGCACCACAAACATAGACTTCACATTAAGATAAACGATATTGACGCTTTGCTTTCGCAAGA
AAGGCTTTCTTCCCACCAATTTTTATAAAGTCCAAGTTCATCCCTCAAATGAGACAAACATGGAT
TCTAGAAATGATCTACATTCACTTTGTGATTAGACATAATAAACACATTATCCTCATTAGGATAA
ATGATATTGATGATTTTCTTTT
Found at i:343250 original size:158 final size:159
Alignment explanation
Indices: 342992--343743 Score: 377
Period size: 158 Copynumber: 4.8 Consensus size: 159
342982 AAGCATTGAT
** * * * * * * *
342992 TCTCATAACAATCTCCACTCTTTTCAAGATTAGGAACCAAAAACACATTC-CCTTCA-ATAGGAT
1 TCTCATAGTAATCACCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTCC-TCATA-AGGAT
** * * * *
343055 ACATGGCACTGATGCTTTAGTGTT-GCAAGAAAAGCTTTTTTTTCAACC-ATTTTTGTTAGAATC
64 ACATGATATTGATGCTTTGGT-TTCACAAGAAAAGCTTTTCTTTCAACCAATTTTTGTTAGAATC
343118 AAAGTTTGTCTCTTCAATAGGACAAACATGAA
128 AAAGTTTGTCTCTTCAATAGGACAAACATGAA
* *
343150 TCGTCATA-TAATCACCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTTATAAGGATA
1 TC-TCATAGTAATCACCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTCCTCATAAGGATA
* * * * * *
343214 CATGATATTGATGCTTTGGTTTCACAAGAAAGGC-TTTCTTCCCACCAATTTTT-ATA-ATGTCT
65 CATGATATTGATGCTTTGGTTTCACAAGAAAAGCTTTTCTTTCAACCAATTTTTGTTAGA-ATCA
* *
343276 AAGTTTGTGC-C-TCAA-ATGAGACAAACAAGGA
129 AAGTTTGT-CTCTTCAATA-G-GACAAACATGAA
* * * *
343307 T-TC-TAGTAATGACCTTCATTCATTTT--GTGATTAGGCACTATAAACACATTCTCCTCAGT-A
1 TCTCATAGTAATCA-C--CATTC-TTTTCAG-GATTAGGCACCATAAACATAGTCTCCTCA-TAA
* * * ** *** * * * * ** *
343367 GGGTAAATGATATTGATGATTTCCTTTTGTATGGAAA-CATTTTCTTT-ACCCTATTTTCCTTAA
60 GGATACATGATATTGATGCTTTGGTTTCACAAGAAAAGC-TTTTCTTTCAACCAATTTTTGTTAG
* ** * * * * *
343430 AATCAAATTTTACCCCTTAAATATGACAAGCATCGAT
124 AATCAAAGTTTGTCTCTTCAATAGGACAAACAT-GAA
* * * * * * * * *
343467 TCTCATAATAGTCTCCAATCTTTTCAAGATTGGGAACCA-ATAACA-ATTC-CCTTCATTAGGAT
1 TCTCATAGTAATCACCATTCTTTTCAGGATTAGGCACCATA-AACATAGTCTCC-TCATAAGGAT
* * * * * *
343529 ACATGAAATTAATGCTTTGGTATCGA-AAGAAAATCTTTTCTTTCAA-CAGTTTTTGTTAGAATA
64 ACATGATATTGATGCTTTGGTTTC-ACAAGAAAAGCTTTTCTTTCAACCAATTTTTGTTAGAATC
* ** **
343592 AAAGTTTGTCTCTTTAATAAAATGAACATGAA
128 AAAGTTTGTCTCTTCAATAGGACAAACATGAA
* * * * * * *
343624 TAGTCATATTAATC-CCTATTCTCTTCAGGATTAGGCACCACATACATAGTTTTCTCATAAGGAT
1 T-CTCATAGTAATCACC-ATTCTTTTCAGGATTAGGCACCATAAACATAGTCTCCTCATAAGGAT
* * * *
343688 ACACGATATTGACGCTTTGGTTTCACAAG-AAAGGTTTT-TTTCCCACCAATTTTTGT
64 ACATGATATTGATGCTTTGGTTTCACAAGAAAAGCTTTTCTTT-CAACCAATTTTTGT
343744 AATGTCTAAG
Statistics
Matches: 433, Mismatches: 119, Indels: 83
0.68 0.19 0.13
Matches are distributed among these distances:
154 2 0.00
155 8 0.02
156 7 0.02
157 48 0.11
158 255 0.59
159 97 0.22
160 7 0.02
161 4 0.01
162 5 0.01
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.36
Consensus pattern (159 bp):
TCTCATAGTAATCACCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTCCTCATAAGGATAC
ATGATATTGATGCTTTGGTTTCACAAGAAAAGCTTTTCTTTCAACCAATTTTTGTTAGAATCAAA
GTTTGTCTCTTCAATAGGACAAACATGAA
Found at i:343428 original size:475 final size:474
Alignment explanation
Indices: 342537--343873 Score: 1712
Period size: 475 Copynumber: 2.8 Consensus size: 474
342527 TCACCATTTC
** * * * * *
342537 TTTCAAGATTAGGAACCACGAACATATTCCCTTCAGTAAGATACATGTCATTGATGCTTTTGTGC
1 TTTCAAGATTAGGAACCAAAAACA-ATTCCCTTCAATAGGATACATGACATTGATGCTTTAGTGT
* * ** * *
342602 CACAAGAAAAGCTTTTCTTTCAACTATTTTTGAAAGAATCATTA-TTTGTCTCTTTAGTAAGACA
65 CGCAAGAAAAGCTTTTCTTTCAACCATTTTTGTTAGAATCA-AAGTTTGTCTCTTTAATAAGACA
** * * *
342666 AATGTGAATAGTAATACTAATCCCCATTCTTCTT-AGGATTAGGCACCATAAACATAGACTTCAC
129 AACATGAATAGTCATACTAAT-CCCATTCTT-TTCAGGATTAGGCACCATAAACATAGTCTTCTC
* * * **
342730 ATAAGGATAAATGATATTGGCGCTTTGCTTTTGCAAGAAAGGCTTTCTTCCCACCAATTTTTATA
192 ATAAGGATACATGATATTGACGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTATA
* * * *
342795 ATGTCTAAGTTCATCCCTCAAATGAGACAAACATGGATTCTAGAAATGATCTTCATTCACTTTGT
257 ATGTCTAAGTTCATGCCTCAAATGAGACAAACAAGGATTCTAGTAATGATCTTCATTCATTTTGT
* * * * *
342860 GATTGGGCACTATAAACACATTATCCTCTTTAAGGTAAATGATATTGATGATTTTCTTTTGCATG
322 GATTAGGCACTATAAACACATTCTCCTCATTAGGGTAAATGATATTGATGATTTCCTTTTGCATG
* * * * ** *
342925 GAAATATTTCCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCCCGAAAATAAGGTAAGCATTG
387 GAAACATTTCCTTTACCCTATTTTCCTTAAAATCAAAGTTCACCCCGAAAATAAGACAAGCATCG
*
342990 ATTCTCATAACAATCTCCACTCT
452 ATTCTCATAACAATCTCCAATCT
* *
343013 TTTCAAGATTAGGAACCAAAAACACATTCCCTTCAATAGGATACATGGCACTGATGCTTTAGTGT
1 TTTCAAGATTAGGAACCAAAAACA-ATTCCCTTCAATAGGATACATGACATTGATGCTTTAGTGT
* * * *
343078 TGCAAGAAAAGCTTTTTTTTCAACCATTTTTGTTAGAATCAAAGTTTGTCTCTTCAATAGGACAA
65 CGCAAGAAAAGCTTTTCTTTCAACCATTTTTGTTAGAATCAAAGTTTGTCTCTTTAATAAGACAA
* *
343143 ACATGAATCGTCATA-TAATCACCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTTAT
130 ACATGAATAGTCATACTAATC-CCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCAT
*
343207 AAGGATACATGATATTGATGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTATAAT
194 AAGGATACATGATATTGACGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTATAAT
** *
343272 GTCTAAGTTTGTGCCTCAAATGAGACAAACAAGGATTCTAGTAATGACCTTCATTCATTTTGTGA
259 GTCTAAGTTCATGCCTCAAATGAGACAAACAAGGATTCTAGTAATGATCTTCATTCATTTTGTGA
* *
343337 TTAGGCACTATAAACACATTCTCCTCAGTAGGGTAAATGATATTGATGATTTCCTTTTGTATGGA
324 TTAGGCACTATAAACACATTCTCCTCATTAGGGTAAATGATATTGATGATTTCCTTTTGCATGGA
* * * ** *
343402 AACATTTTCTTTACCCTATTTTCCTTAAAATCAAATTTTACCCCTTAAATATGACAAGCATCGAT
389 AACATTTCCTTTACCCTATTTTCCTTAAAATCAAAGTTCACCCCGAAAATAAGACAAGCATCGAT
* *
343467 TCTCATAATAGTCTCCAATCT
454 TCTCATAACAATCTCCAATCT
* * * * * * *
343488 TTTCAAGATTGGGAACCAATAACAATTCCCTTCATTAGGATACATGAAATTAATGCTTTGGTATC
1 TTTCAAGATTAGGAACCAAAAACAATTCCCTTCAATAGGATACATGACATTGATGCTTTAGTGTC
* * * * **
343553 GAAAGAAAATCTTTTCTTTCAA-CAGTTTTTGTTAGAATAAAAGTTTGTCTCTTTAATAAAATGA
66 GCAAGAAAAGCTTTTCTTTCAACCA-TTTTTGTTAGAATCAAAGTTTGTCTCTTTAATAAGACAA
* * * * *
343617 ACATGAATAGTCATATTAATCCCTATTCTCTTCAGGATTAGGCACCACATACATAGTTTTCTCAT
130 ACATGAATAGTCATACTAATCCC-ATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCAT
* * * *
343682 AAGGATACACGATATTGACGCTTTGGTTTCACAAGAAAGGTTTTTTTCCCACCAATTTTTGTAAT
194 AAGGATACATGATATTGACGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTATAAT
* * * *
343747 GTCTAAGTCCATGCCTCAAATGAGTCAAACACGGATTCTAGTAATGATCTACATTCATTTTGTGA
259 GTCTAAGTTCATGCCTCAAATGAGACAAACAAGGATTCTAGTAATGATCTTCATTCATTTTGTGA
* * * * **
343812 TTAGACA-TAATAAACACATTCTCTTCATTAGGATAAATGCTATTGATGATTTTTTTTTGCAT
324 TTAGGCACT-ATAAACACATTCTCCTCATTAGGGTAAATGATATTGATGATTTCCTTTTGCAT
343874 CGATTCTCCT
Statistics
Matches: 747, Mismatches: 107, Indels: 15
0.86 0.12 0.02
Matches are distributed among these distances:
473 2 0.00
474 105 0.14
475 520 0.70
476 120 0.16
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (474 bp):
TTTCAAGATTAGGAACCAAAAACAATTCCCTTCAATAGGATACATGACATTGATGCTTTAGTGTC
GCAAGAAAAGCTTTTCTTTCAACCATTTTTGTTAGAATCAAAGTTTGTCTCTTTAATAAGACAAA
CATGAATAGTCATACTAATCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAA
GGATACATGATATTGACGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTATAATGT
CTAAGTTCATGCCTCAAATGAGACAAACAAGGATTCTAGTAATGATCTTCATTCATTTTGTGATT
AGGCACTATAAACACATTCTCCTCATTAGGGTAAATGATATTGATGATTTCCTTTTGCATGGAAA
CATTTCCTTTACCCTATTTTCCTTAAAATCAAAGTTCACCCCGAAAATAAGACAAGCATCGATTC
TCATAACAATCTCCAATCT
Found at i:344284 original size:412 final size:411
Alignment explanation
Indices: 343459--344285 Score: 1020
Period size: 412 Copynumber: 2.0 Consensus size: 411
343449 AATATGACAA
* * * * *
343459 GCATCGATTCTCATAATAGTCTCCAATCTTTTCAAGATTGGGAACCAATAACAATTCCCTTCATT
1 GCATCGATTCTCATAACAGTCACCAATCTTTTCAAGATTAGGAACCAAGAACAATTCCCTTCAGT
* * * * **
343524 AGGATACATGAAATTAATGCTTTGGTATCGAAAGAAAATCTTTTCTTTCAACAGTTTTTGTTAGA
66 AAGATACATGAAATTAATGCTTTGGTAGCCAAAGAAAAGCTTTTCTTTCAACAGTTTTTGAAAGA
** * * *
343589 ATAAAAGTTTGTCTCTTTAATAAAATGAACATGAATAGTCATATTAATCCCTATTCTCTTCAGGA
131 ATAAAAGTTTGTCTCTTTAATAAAACAAACATGAATAGTAATACTAATCCCCATTCTCTTCAGGA
* ** * * *
343654 TTAGGCACCACATACATAGTTTTCTCATAAGGATACACGATATTGACGCTTTGGTTTCACAAGAA
196 TTAGGCACCACAAACATAGACTTCACATAAGGATAAACGATATTGACGCTTTGCTTTCACAAGAA
* * * * *
343719 AGGTTTTTTTCCCACCAATTTTTGTAATGTCTAAGTCCATGCCTCAAATGAGTCAAACACGGATT
261 AGGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTCCATCCCTCAAATGAGACAAACACGGATT
* * * *
343784 CTAGTAATGATCTACATTCATTTTGTGATTAGACATAATAAACACATTCTCTTCATTAGGATAAA
326 CTAGAAATGATCTACATTCACTTTGTGATTAGACATAATAAACACATTATCCTCATTAGGATAAA
* * *
343849 TGCTATTGATGATTTTTTTTT
391 TGATATTGATAATTTTCTTTT
* *
343870 GCATCGATTCTCCTAACAGTCACC-ATTTCTTTCAAGATTAGGAACCAAGAACATATTCCCTTCA
1 GCATCGATTCTCATAACAGTCACCAATCT-TTTCAAGATTAGGAACCAAGAACA-ATTCCCTTCA
** * *
343934 GTAAGATACATGTCATTGATGCTTTTGT-GCCACAAGAAAAGCTTTTCTTTCAACTA-TTTTTGA
64 GTAAGATACATGAAATTAATGCTTTGGTAGCCA-AAGAAAAGCTTTTCTTTCAAC-AGTTTTTGA
** * * **
343997 AAGAATCATTA-TTTGTCTCTTTAGTAAGACAAATGTGAATAGTAATACTAATCCCCATTCTTCT
127 AAGAAT-AAAAGTTTGTCTCTTTAATAAAACAAACATGAATAGTAATACTAATCCCCATTC-TCT
* * * **
344061 T-AGGATTAGGCACCATAAACATAGACTTCACATAAGGATAAATGATATTGGCGCTTTGCTTTTG
190 TCAGGATTAGGCACCACAAACATAGACTTCACATAAGGATAAACGATATTGACGCTTTGCTTTCA
*
344125 CAAGAAAGGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTTCATCCCTCAAATGAGACAAACA
255 CAAGAAAGGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTCCATCCCTCAAATGAGACAAACA
* * * * *
344190 TGGATTCTAGAAATGATCTTCATTCACTTTGTGATTGGGCACT-ATAAACACATTATCCTCTTTA
320 CGGATTCTAGAAATGATCTACATTCACTTTGTGATTAGACA-TAATAAACACATTATCCTCATT-
344254 AGG-TAAATGATATTGATAATTTTCTTTT
383 AGGATAAATGATATTGATAATTTTCTTTT
344282 GCAT
1 GCAT
344286 GGAAATATTT
Statistics
Matches: 351, Mismatches: 57, Indels: 15
0.83 0.13 0.04
Matches are distributed among these distances:
410 3 0.01
411 45 0.13
412 292 0.83
413 11 0.03
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (411 bp):
GCATCGATTCTCATAACAGTCACCAATCTTTTCAAGATTAGGAACCAAGAACAATTCCCTTCAGT
AAGATACATGAAATTAATGCTTTGGTAGCCAAAGAAAAGCTTTTCTTTCAACAGTTTTTGAAAGA
ATAAAAGTTTGTCTCTTTAATAAAACAAACATGAATAGTAATACTAATCCCCATTCTCTTCAGGA
TTAGGCACCACAAACATAGACTTCACATAAGGATAAACGATATTGACGCTTTGCTTTCACAAGAA
AGGCTTTCTTCCCACCAATTTTTATAATGTCTAAGTCCATCCCTCAAATGAGACAAACACGGATT
CTAGAAATGATCTACATTCACTTTGTGATTAGACATAATAAACACATTATCCTCATTAGGATAAA
TGATATTGATAATTTTCTTTT
Found at i:344787 original size:476 final size:475
Alignment explanation
Indices: 343899--345523 Score: 2005
Period size: 476 Copynumber: 3.4 Consensus size: 475
343889 TCACCATTTC
* * * * *
343899 TTTCAAGATTAGGAACCAAGAACATATTCCCTTCAGTAAGATACATGTCATTGATGCTTTTGTGC
1 TTTCAAGATTAGGAACCAAAAACATATTCCCTTCATTAGGATACATGACATTGATGC-TTTGTGT
* * * * *
343964 CACAAGAAAAGCTTTTCTTTCAACTATTTTTGAAAGAATCATTA-TTTGTCTCTTTAGTAAGACA
65 CGCAAGAAAAGCTTTTCTTTCAACCATTTTTGATAGAATCA-AAGTTTGTCTCTTTAATAAGACA
** * * * * *
344028 AATGTGAATAGTAATACTAATCCCCATTCTTCTT-AGGATTAGGCACCATAAACATAGACTTCAC
129 AACATGAATAGTCATACTAATCCCAATTCTT-TTCAGGATTAGGCACCACAAACATAGTCTTCTC
* * * **
344092 ATAAGGATAAATGATATTGGCGCTTTGCTTTTGCAAGAAAGGCTTTCTTCCCACCAATTTTTATA
193 ATAAGGATACATGATATTGACGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTATA
* * * *
344157 ATGTCTAAGTTCATCCCTCAAATGAGACAAACATGGATTCTAGAAATGATCTTCATTCACTTTGT
258 ATGTCTAAGTTCATGCCTCAAATGAGACAAACAAGGATTCTAGTAATGATCTTCATTCATTTTGT
* * * *
344222 GATTGGGCACTATAAACACATTATCCTCTTTAAGGTAAATGATATTGATAATTTTCTTTTGCATG
323 GATTAGGCACTATAAACACATTCTCCTCATTAAGGTAAATGATATTGATGATTTTCTTTTGCATG
* * * * *
344287 GAAATATTTCCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCCCGAAAATAAGGTAAGCGTTG
388 GAAATATTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTAAAATAAGGCAAGCATTG
* * *
344352 ATTCTCATAACAATCTCCACTCT
453 ATTCTCATAATAGTCTCCAATCT
* * *
344375 TTTCAAGATTAGGAACCAAAAACACATTCCCTTCGA-TAGGATACATGGCACTGATGCTTTAGTG
1 TTTCAAGATTAGGAACCAAAAACATATTCCCTTC-ATTAGGATACATGACATTGATGCTTT-GTG
* * * * *
344439 TTGCAAGAAAAGCTTTTTTTTTCAACCATTTTTGTTAGAATCAAAGTTTGTCTCTTCAATAGGAC
64 TCGCAAGAAAAGC-TTTTCTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTTAATAAGAC
* *
344504 AAACATGAATCGTCATA-TAATCACC-ATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCT
128 AAACATGAATAGTCATACTAATC-CCAATTCTTTTCAGGATTAGGCACCACAAACATAGTCTTCT
* *
344567 TATAAGGATACATGATATTGATGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTAT
192 CATAAGGATACATGATATTGACGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTAT
** *
344632 AATGTCTAAGTTTGTGCCTCAAATGAGACAAACAAGGATTCTAGTAATGACCTTCATTCATTTTG
257 AATGTCTAAGTTCATGCCTCAAATGAGACAAACAAGGATTCTAGTAATGATCTTCATTCATTTTG
* * * *
344697 TGATTAGGCACTATAAACACATTCTCCTCAGTAGGGTAAATGATATTGATGATTTCCTTTTGTAT
322 TGATTAGGCACTATAAACACATTCTCCTCATTAAGGTAAATGATATTGATGATTTTCTTTTGCAT
* * * * * * * * *
344762 GGAAACATTTTCTTTACCCTATTTTCCTTAAAATCAAATTTTACCCCTTAAATATGACAAGCATC
387 GGAAATATTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTAAAATAAGGCAAGCATT
344827 GATTCTCATAATAGTCTCCAATCT
452 GATTCTCATAATAGTCTCCAATCT
* * * * *
344851 TTTCAAGATTGGGAACCAATAACA-ATTCCCTTCATTAGGATACATGAAATTAATGCTTTGGTAT
1 TTTCAAGATTAGGAACCAAAAACATATTCCCTTCATTAGGATACATGACATTGATGCTTT-GTGT
* * * * * **
344915 CGAAAGAAAATCTTTTCTTTCAA-CAGTTTTTGTTAGAATAAAAGTTTGTCTCTTTAATAAAATG
65 CGCAAGAAAAGCTTTTCTTTCAACCA-TTTTTGATAGAATCAAAGTTTGTCTCTTTAATAAGACA
* * * * *
344979 AACATGAATAGTCATATTAATCCCTATTCTCTTCAGGATTAGGCACCACATACATAGTTTTCTCA
129 AACATGAATAGTCATACTAATCCCAATTCTTTTCAGGATTAGGCACCACAAACATAGTCTTCTCA
* * * *
345044 TAAGGATACACGATATTGACGCTTTGGTTTCACAAGAAAGGTTTTTTTCCCACCAATTTTTGTAA
194 TAAGGATACATGATATTGACGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTATAA
* * *
345109 TGTCTAAGTCCATGCCTCAAATGAGTCAAACACGGATTCTAGTAATGATCTTCATTCATTTTGTG
259 TGTCTAAGTTCATGCCTCAAATGAGACAAACAAGGATTCTAGTAATGATCTTCATTCATTTTGTG
* *** *
345174 ATTAGGCACTATAAACACAATCTCCTCATTACCAT-AATCGATATTGATGATTTTATTTTGCATG
324 ATTAGGCACTATAAACACATTCTCCTCATTAAGGTAAAT-GATATTGATGATTTTCTTTTGCATG
* * * *
345238 AAAATGTTTTTTTTGCCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAAA-AAGGCAAGCATT
388 GAAATATTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCC-TAAAATAAGGCAAGCATT
* *
345302 GATTCTCCA-AATAGTCCCCATTCT
452 GATTCT-CATAATAGTCTCCAATCT
* * * * *
345326 TCTT-AAGATTGGGAACCAAAAACATATTCCCGTCATTAGGATACATGATATTGACGCTTTGGGA
1 T-TTCAAGATTAGGAACCAAAAACATATTCCCTTCATTAGGATACATGACATTGATGCTTTGTG-
* * * * * * *
345390 TCACCAGAAAAGCTATTCTTTCCACCATTTTTGATAGAATCAAAGCTTGTGTCTTAAATAAGACA
64 TCGCAAGAAAAGCTTTTCTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTTAATAAGACA
*
345455 AACATGAATAGTCATACTAATCCCAAGTT-TTTTCAAGATTAGGCACCACAAACATAGTCTTCTC
129 AACATGAATAGTCATACTAATCCCAA-TTCTTTTCAGGATTAGGCACCACAAACATAGTCTTCTC
345519 ATAAG
193 ATAAG
345524 TGTAGACACC
Statistics
Matches: 985, Mismatches: 146, Indels: 36
0.84 0.13 0.03
Matches are distributed among these distances:
473 2 0.00
474 63 0.06
475 343 0.35
476 516 0.52
477 61 0.06
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.35
Consensus pattern (475 bp):
TTTCAAGATTAGGAACCAAAAACATATTCCCTTCATTAGGATACATGACATTGATGCTTTGTGTC
GCAAGAAAAGCTTTTCTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTTAATAAGACAAA
CATGAATAGTCATACTAATCCCAATTCTTTTCAGGATTAGGCACCACAAACATAGTCTTCTCATA
AGGATACATGATATTGACGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTATAATG
TCTAAGTTCATGCCTCAAATGAGACAAACAAGGATTCTAGTAATGATCTTCATTCATTTTGTGAT
TAGGCACTATAAACACATTCTCCTCATTAAGGTAAATGATATTGATGATTTTCTTTTGCATGGAA
ATATTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTAAAATAAGGCAAGCATTGATT
CTCATAATAGTCTCCAATCT
Found at i:345784 original size:19 final size:19
Alignment explanation
Indices: 345760--345827 Score: 85
Period size: 19 Copynumber: 3.9 Consensus size: 19
345750 AATTCAACGA
345760 TTTGTATCGATACATAAGT
1 TTTGTATCGATACATAAGT
345779 TTTGTATCGATAC--AA--
1 TTTGTATCGATACATAAGT
345794 --TGTATCGATACATAAGT
1 TTTGTATCGATACATAAGT
*
345811 ATTGTATCGATACATAA
1 TTTGTATCGATACATAA
345828 TTAGCTACTG
Statistics
Matches: 43, Mismatches: 0, Indels: 12
0.78 0.00 0.22
Matches are distributed among these distances:
13 11 0.26
15 2 0.05
17 2 0.05
19 28 0.65
ACGTcount: A:0.35, C:0.12, G:0.15, T:0.38
Consensus pattern (19 bp):
TTTGTATCGATACATAAGT
Found at i:345798 original size:32 final size:32
Alignment explanation
Indices: 345762--345824 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
345752 TTCAACGATT
*
345762 TGTATCGATACATAAGTTTTGTATCGATACAA
1 TGTATCGATACATAAGTATTGTATCGATACAA
345794 TGTATCGATACATAAGTATTGTATCGATACA
1 TGTATCGATACATAAGTATTGTATCGATACA
345825 TAATTAGCTA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.35, C:0.13, G:0.16, T:0.37
Consensus pattern (32 bp):
TGTATCGATACATAAGTATTGTATCGATACAA
Found at i:345799 original size:13 final size:13
Alignment explanation
Indices: 345781--345805 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
345771 ACATAAGTTT
345781 TGTATCGATACAA
1 TGTATCGATACAA
345794 TGTATCGATACA
1 TGTATCGATACA
345806 TAAGTATTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:345885 original size:13 final size:13
Alignment explanation
Indices: 345867--345892 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
345857 CATTTTTCTG
345867 TGTATCGATACAT
1 TGTATCGATACAT
345880 TGTATCGATACAT
1 TGTATCGATACAT
345893 GGATCTTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:345889 original size:33 final size:33
Alignment explanation
Indices: 345847--345913 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
345837 GCCAAGGAAA
***
345847 TGTATCGATACATTTTTCTGTGTATCGATACAT
1 TGTATCGATACATGGATCTGTGTATCGATACAT
*
345880 TGTATCGATACATGGATCTTTGTATCGATACAT
1 TGTATCGATACATGGATCTGTGTATCGATACAT
345913 T
1 T
345914 TGGAAATTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.25, C:0.15, G:0.16, T:0.43
Consensus pattern (33 bp):
TGTATCGATACATGGATCTGTGTATCGATACAT
Found at i:348319 original size:51 final size:53
Alignment explanation
Indices: 348255--348385 Score: 169
Period size: 51 Copynumber: 2.5 Consensus size: 53
348245 AGTTTTTCAA
* * * *
348255 TTCTCCACAATCGGGGATATTCCAACTCCGATTTTATTTTC-AAAACACTAA-
1 TTCTTCACAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAAACACCAAT
* *
348306 TT-TTCTATAATCGGGGATACTCTAACTCCGATTTTATTTCCAAAAAACACCAAT
1 TTCTTC-ACAATCGGGGATACTCCAACTCCGATTTTATTTCC-AAAAACACCAAT
348360 TTCTTCACAATCGGGGATACTCCAAC
1 TTCTTCACAATCGGGGATACTCCAAC
348386 CCCGTTATTT
Statistics
Matches: 67, Mismatches: 8, Indels: 7
0.82 0.10 0.09
Matches are distributed among these distances:
50 2 0.03
51 33 0.49
53 9 0.13
54 20 0.30
55 3 0.04
ACGTcount: A:0.31, C:0.25, G:0.11, T:0.33
Consensus pattern (53 bp):
TTCTTCACAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAAACACCAAT
Found at i:348485 original size:52 final size:52
Alignment explanation
Indices: 348429--348569 Score: 144
Period size: 52 Copynumber: 2.7 Consensus size: 52
348419 TTTTATCGCT
* * * *
348429 AAAACACTAATTTTTCCTCAATCGGGGATACTCCAATCTCGGTTTTATTTTC-
1 AAAACACCAATTTTTCCTCAATCGGGGATACTCCAA-CTCGATTCTATTTCCA
* * *
348481 AAAACGCCAA-TTTTCCTTTAATCGGGGATATTCCAACTCCGATTCTATTTCCA
1 AAAACACCAATTTTTCC-TCAATCGGGGATACTCCAACT-CGATTCTATTTCCA
* * *
348534 AAAATACCAATTTTT-CACAATCGAGGATACTCCAAC
1 AAAACACCAATTTTTCCTCAATCGGGGATACTCCAAC
348570 CTCGTTATTT
Statistics
Matches: 72, Mismatches: 13, Indels: 8
0.77 0.14 0.09
Matches are distributed among these distances:
51 8 0.11
52 51 0.71
53 9 0.12
54 4 0.06
ACGTcount: A:0.31, C:0.25, G:0.11, T:0.33
Consensus pattern (52 bp):
AAAACACCAATTTTTCCTCAATCGGGGATACTCCAACTCGATTCTATTTCCA
Found at i:348589 original size:28 final size:28
Alignment explanation
Indices: 348553--348629 Score: 82
Period size: 28 Copynumber: 2.8 Consensus size: 28
348543 ATTTTTCACA
* * *
348553 ATCGAGGATACTCCAACCTCGTTATTTC
1 ATCGGGGATACTCCAACCCCGTTACTTC
*
348581 ATCGGGGATACTCTAACCCCGTTACTTC
1 ATCGGGGATACTCCAACCCCGTTACTTC
*** *
348609 CGAGGGGATACTCCAATCCCG
1 ATCGGGGATACTCCAACCCCG
348630 ATTTTTTTTC
Statistics
Matches: 40, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
28 40 1.00
ACGTcount: A:0.23, C:0.31, G:0.19, T:0.26
Consensus pattern (28 bp):
ATCGGGGATACTCCAACCCCGTTACTTC
Found at i:350603 original size:476 final size:473
Alignment explanation
Indices: 349685--351157 Score: 1747
Period size: 476 Copynumber: 3.1 Consensus size: 473
349675 CGCGACAATA
** *
349685 AGGATACACAATATTGGTGCTTTGGTTTCACAAGAAAGGCTTTT-TCCCCTCCAATTTTTATAAA
1 AGGATACATGATATTGATGCTTTGGTTTCACAAGAAAGGCTTTTCT-CCCTCCAATTTTTATAAA
* * * * * * * *
349749 TTCTTAGTCCGTACCACAAATGAGTCAAACATGGACTCTAGTAATGATTTTCATTCATTTTATGA
65 GTCTAAGTTC-TACCTCAAATAAATCAAACATGGATTCTAGTAATGATCTTCATTCATTTTATGA
* *
349814 TTAGACAATATAAACACATTCTCCTCATTTGGATAAAAGATATTGATGATTTTTTTTTGAATGAA
129 TTAGACAATATAAACACATTCTCCTCATTAGGATAAAAGATATTGATGATTTTTTTTTGCATGAA
*
349879 AATGTTTCCTTTGCCCTATTTTCATTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCA-CTGA
194 AATGTTTCCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATC-GA
349943 TTCTCGTAACAGTC-CCTATTCTTTTCAAGATTGGGAACCAAAAACATATTCCCTTCATTAGGAT
258 TTCTCGTAACAGTCTCC-ATTCTTTTCAAGATTGGGAACCAAAAACATATTCCCTTCATTAGGAT
* * * ** *
350007 ACATAACATTGATGATTTGG-GATCACAAGAAAAGCTATTCTTTCT-ACCGTTTTTGATAGAATC
322 ACTTGACATTGATGCTTTGGTG-TTGCAAGAAAAGCTTTTCTTT-TAACCG-TTTTGATAGAATC
* *
350070 AAAGTTTGTCTCTTAAATAAGACAAACGTGAATAGTCATACTAAT-CATCATTCTTTTCAGGATT
384 AAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCTCA-TCTTTTCAGGATT
*
350134 AGGCACCATAAAGATAGTATTCTCGTT
448 AGGCACCATAAA-ATAGTATTCTCATT
* * * *
350161 ATGATAGATGATATTGATGCTTTGGTTTCACAAGAAAGGCTTTTCTCCCTCCAAGTTTTGTAAAG
1 AGGATACATGATATTGATGCTTTGGTTTCACAAGAAAGGCTTTTCTCCCTCCAATTTTTATAAAG
* *
350226 TCTAAGTGTCTGCCTCAAATAAATCAAACATGGATTCTAGTAATGATCTTCATTCATTTCATGAT
66 TCTAAGT-TCTACCTCAAATAAATCAAACATGGATTCTAGTAATGATCTTCATTCATTTTATGAT
* *
350291 TAGACAAAATAAACACATTCTCCTCATTAGGATAAAAGATATTGATGATTTTTTTTTTGCATTAA
130 TAGACAATATAAACACATTCTCCTCATTAGGATAAAAGATATTGATGA-TTTTTTTTTGCATGAA
* * * * *
350356 AATCCTTT-TTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCGA
194 AAT-GTTTCCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATCGA
* **
350420 TTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAGAATGTATTCCC-TCTATTAGGAT
258 TTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACATATTCCCTTC-ATTAGGAT
*
350484 ACTTGACATTGATGCTTTGGTGTTGTAAGAAAAGCTTTTCTTTTAACCGTTTTGATAGAATCAAA
322 ACTTGACATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTCTTTTAACCGTTTTGATAGAATCAAA
* * * * * *
350549 GTTTGTCTCTTATAA-AAGACAAATATGAATAGTCATATTAATCCCTGATCTTTTCATGATTTGA
387 GTTTGTCTCTTA-AATAAGACAAACATGAATAGTCATACTAATCCCTCATCTTTTCAGGATTAGG
* * * *
350613 CACCATAAACATAGTCTACTTATA
451 CACCATAAA-ATAGTATTCTCATT
* * * * * * * *
350637 AGGGTACACGATATTGACGCTTGGGTTTCGCAAGAAAGGC-TTTCTTCCTACTAATTTTTATAAT
1 AGGATACATGATATTGATGCTTTGGTTTCACAAGAAAGGCTTTTCTCCCT-CCAATTTTTATAAA
* * * * *
350701 GTCTAAGTTTGTACCTCAAACGAAA-CAAACATCGATTCTAGTAATGATCTTCATTAATTTTGTG
65 GTCTAAG-TTCTACCTCAAA-TAAATCAAACATGGATTCTAGTAATGATCTTCATTCATTTTATG
* * * * * * * * *
350765 ATTAGGCACTATAAACAGATTATCCTCATTAGGGTAAATGATATTGATGATTTTCTTTCGCATGG
128 ATTAGACAATATAAACACATTCTCCTCATTAGGATAAAAGATATTGATGATTTTTTTTTGCATGA
* * ** *
350830 AAATGTTTCCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCCCATT-AATAAGGGAAAAATTG
193 AAATGTTTCCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCC-TTAAATAAGGCAAGCATCG
* * * * * * *
350894 ATTCTTAG-AATAGTCTCTATTCTTTTTAAGATTGGGAACCAAAAACACACTCCCTTCAATAGGA
257 ATTC-TCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACATATTCCCTTCATTAGGA
* * *
350958 TACTTGACATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTCTTTCAATCGTTTTGGTTAGAATCA
321 TACTTGACATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTCTTTTAACCGTTTT-GATAGAATCA
*
351023 AAGTTTGTTTCTTAAATAAGACAAACATGAATAGTCATACTAATCCC-CAT-TCTTTCAGGATTA
385 AAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCTCATCT-TTTCAGGATTA
* *
351086 GGAACCA-AGAAT-GTATTCCCTTCATT
449 GGCACCATAAAATAGTATT--C-TCATT
* * * * *
351112 AGGATACTTGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCT
1 AGGATACATGATATTGATGCTTTGGTTTCACAAGAAAGGCTTTTCT
351158 TTCAACCGTT
Statistics
Matches: 846, Mismatches: 126, Indels: 50
0.83 0.12 0.05
Matches are distributed among these distances:
472 3 0.00
473 2 0.00
474 7 0.01
475 218 0.26
476 439 0.52
477 170 0.20
478 7 0.01
ACGTcount: A:0.32, C:0.17, G:0.14, T:0.36
Consensus pattern (473 bp):
AGGATACATGATATTGATGCTTTGGTTTCACAAGAAAGGCTTTTCTCCCTCCAATTTTTATAAAG
TCTAAGTTCTACCTCAAATAAATCAAACATGGATTCTAGTAATGATCTTCATTCATTTTATGATT
AGACAATATAAACACATTCTCCTCATTAGGATAAAAGATATTGATGATTTTTTTTTGCATGAAAA
TGTTTCCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATCGATTC
TCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACATATTCCCTTCATTAGGATACTT
GACATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTCTTTTAACCGTTTTGATAGAATCAAAGTTT
GTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCTCATCTTTTCAGGATTAGGCACCA
TAAAATAGTATTCTCATT
Found at i:351124 original size:158 final size:156
Alignment explanation
Indices: 350944--351243 Score: 469
Period size: 158 Copynumber: 1.9 Consensus size: 156
350934 AAAAACACAC
* *
350944 TCCCTTCAATAGGATACTTGACATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTCTTTCAATCGT
1 TCCCTTCAATAGGATACTTGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCGT
* * * *
351009 TTTGGTTAGAATCAAAGTTTGTTTCTTA-AATAAGACAAACATGAATAGTCATACTAATCCCCAT
66 TTT-GATAGAACCAAAGTTTGTCTCTTACAA-AAGAC--ACATGAATAGTCATACTAATCCCCAA
351073 TC-TTTCAGGATTAGGAACCAAGAATGTAT
127 TCTTTTCAGGATTAGGAACCAAGAATGTAT
*
351102 TCCCTTCATTAGGATACTTGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCGT
1 TCCCTTCAATAGGATACTTGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCGT
* *
351167 TTTGATAGAACCAAAGTTTGTCTCTTACAAAAGACATATGAATAGTCATACTAATCCCTAATCTT
66 TTTGATAGAACCAAAGTTTGTCTCTTACAAAAGACACATGAATAGTCATACTAATCCCCAATCTT
351232 TTCAGGATTAGG
131 TTCAGGATTAGG
351244 CACCGTAATC
Statistics
Matches: 131, Mismatches: 9, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
155 25 0.19
156 13 0.10
157 26 0.20
158 67 0.51
ACGTcount: A:0.31, C:0.18, G:0.16, T:0.35
Consensus pattern (156 bp):
TCCCTTCAATAGGATACTTGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCGT
TTTGATAGAACCAAAGTTTGTCTCTTACAAAAGACACATGAATAGTCATACTAATCCCCAATCTT
TTCAGGATTAGGAACCAAGAATGTAT
Found at i:351303 original size:156 final size:156
Alignment explanation
Indices: 350954--351311 Score: 440
Period size: 156 Copynumber: 2.3 Consensus size: 156
350944 TCCCTTCAAT
* *
350954 AGGATACTTGACATTGATGCTTTGGTGTT-GCAAGAAAAGCTTTTCTTTCAATCGTTTTGGTTAG
1 AGGATACTTGACATTGATGCTTTGGT-TTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTGGATAG
* * *
351018 AATCAAAGTTTGTTTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTCAGGA
65 AACCAAAGTTTGTCTCTTAAATAAGAC-AACATGAATAGTCATACTAATCCCCAATCTTTCAGGA
* * * *
351083 TTAGGAACCAAGAATGTATTCCCTTCATT
129 TTAGGAACC-AGAATATAGTCACTTCATA
*
351112 AGGATACTTGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCGTTTT-GATAGA
1 AGGATACTTGACATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTGGATAGA
* *
351176 ACCAAAGTTTGTCTCTTACAA-AAGAC-ATATGAATAGTCATACTAATCCCTAATCTTTTCAGGA
66 ACCAAAGTTTGTCTCTTA-AATAAGACAACATGAATAGTCATACTAATCCCCAATC-TTTCAGGA
*
351239 TTAGGCACC-GTAATCATAGTCTACTT-ATA
129 TTAGGAACCAG-AAT-ATAGTC-ACTTCATA
* * * * *
351268 AGGATACATGATATTGATGCTTAGGTTTCGTAAGAAAGGCTTTT
1 AGGATACTTGACATTGATGCTTTGGTTTCGCAAGAAAAGCTTTT
351312 TTCCCACCAA
Statistics
Matches: 175, Mismatches: 19, Indels: 14
0.84 0.09 0.07
Matches are distributed among these distances:
154 1 0.01
155 28 0.16
156 60 0.34
157 30 0.17
158 56 0.32
ACGTcount: A:0.31, C:0.16, G:0.17, T:0.35
Consensus pattern (156 bp):
AGGATACTTGACATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTGGATAGA
ACCAAAGTTTGTCTCTTAAATAAGACAACATGAATAGTCATACTAATCCCCAATCTTTCAGGATT
AGGAACCAGAATATAGTCACTTCATA
Found at i:351376 original size:631 final size:631
Alignment explanation
Indices: 350435--351723 Score: 1945
Period size: 631 Copynumber: 2.0 Consensus size: 631
350425 GTAACAGTCT
*
350435 CCATTCTTTTCAAGATTGGGAACCAAGAATGTATTCCCTCTATTAGGATACTTGACATTGATGCT
1 CCATTC-TTTCAAGATTAGGAACCAAGAATGTATTCCCTCTATTAGGATACTTGACATTGATGCT
* * * * *
350500 TTGGTGTTGTAAGAAAAGCTTTTCTTTTAACCGTTTTGATAGAATCAAAGTTTGTCTCTTATAAA
65 TTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTGATAGAACCAAAGTTTGTCTCTTACAAA
* * * *
350565 AGACAAATATGAATAGTCATATTAATCCCTGATCTTTTCATGATTTGACACCATAAACATAGTCT
130 AGAC-AATATGAATAGTCATACTAATCCCTAATCTTTTCAGGATTAGACACCATAAACATAGTCT
* * * *
350630 ACTTATAAGGGTACACGATATTGACGCTTGGGTTTCGCAAGAAAGGCTTTCTTCCTACTAATTTT
194 ACTTATAAGGATACACGATATTGACGCTTAGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTT
* * *
350695 TATAATGTCTAAGTTTGTACCTCAAACGAAACAAACATCGATTCTAGTAATGATCTTCATTAATT
259 TATAACGTCTAAGTTCGTACCTCAAACGAAACAAACATAGATTCTAGTAATGATCTTCATTAATT
* * *
350760 TTGTGATTAGGCACTATAAACAGATTATCCTCATTAGGGTAAATGATATTGATGATTTTCTTTCG
324 TTGTGATTAGGCACTATAAACAGATTATCCCCATTAGGGTAAATGATATTGATGATTTTCTTCCA
*
350825 CATGGAAATGTTTCCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCCCATTAATAAGGGAAAA
389 CATGGAAATGTTTCCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCCCATTAATAAGGCAAAA
* * * * * *
350890 ATTGATTCTTAGAATAGTCTCTATTCTTTTTAAGATTGGGAACCAAAAACACACTCCCTTCAATA
454 ATTGATTCTCAGAACAATCTCCATTCTTTTCAAGATTGGGAACCAAAAACACACTCCCTTCAAAA
* * *
350955 GGATACTTGACATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTCTTTCAATCGTTTTGGTTAGAA
519 GGATACATGACATT-ATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTGGTTAGAA
* * * *
351020 TCAAAGTTTG-TTTCTTAAATAAGACAAACATGAATAGTCATACTAATCC
583 TCAAAGTTTGCCTT-TTAAAGAAAACAAACATGAATAGTCATACCAATCC
*
351069 CCATTCTTTCAGGATTAGGAACCAAGAATGTATTCCCT-TCATTAGGATACTTGACATTGATGCT
1 CCATTCTTTCAAGATTAGGAACCAAGAATGTATTCCCTCT-ATTAGGATACTTGACATTGATGCT
351133 TTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTGATAGAACCAAAGTTTGTCTCTTACAAA
65 TTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTGATAGAACCAAAGTTTGTCTCTTACAAA
* * *
351198 AGAC-ATATGAATAGTCATACTAATCCCTAATCTTTTCAGGATTAGGCACCGTAATCATAGTCTA
130 AGACAATATGAATAGTCATACTAATCCCTAATCTTTTCAGGATTAGACACCATAAACATAGTCTA
* * * *
351262 CTTATAAGGATACATGATATTGATGCTTAGGTTTCGTAAGAAAGGCTTTTTTCCCACCAATTTTT
195 CTTATAAGGATACACGATATTGACGCTTAGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTT
* * * * * * *
351327 ATAACGTCTAAGTTCGTGCCTTAAATGAGACAAATATAGATTCTAGTAATGGTCTTCATTCATTT
260 ATAACGTCTAAGTTCGTACCTCAAACGAAACAAACATAGATTCTAGTAATGATCTTCATTAATTT
*
351392 TGTGATTAGGCACTATAAACAGATTTTCCCCATTAGGGTAAATGATATTGATGATTTTCTTCCAC
325 TGTGATTAGGCACTATAAACAGATTATCCCCATTAGGGTAAATGATATTGATGATTTTCTTCCAC
***
351457 ATGGAAATGTTTCCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCCCATTAATAAGGCAGGCA
390 ATGGAAATGTTTCCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCCCATTAATAAGGCAAAAA
* * *
351522 TTGATTCTCGGAACAATCTCCATTCTTTTCAAGATTGGGAACTAAAAACACATTCCCTTCAAAAG
455 TTGATTCTCAGAACAATCTCCATTCTTTTCAAGATTGGGAACCAAAAACACACTCCCTTCAAAAG
*
351587 GATACATGACATTATGCTTTGGTGTCGCAGGAAAAGCTTTTCTTTCAACCGTTTTGGTTAGAATC
520 GATACATGACATTATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTGGTTAGAATC
* *
351652 AAAGTTTGCCTTTTCAAGAAAACAAACATGAATAGTCATTCCAATCC
585 AAAGTTTGCCTTTTAAAGAAAACAAACATGAATAGTCATACCAATCC
* * *
351699 TCATTTTTTTCAAGATTAGGCACCA
1 CCA-TTCTTTCAAGATTAGGAACCA
351724 TAAAAATTGC
Statistics
Matches: 589, Mismatches: 63, Indels: 9
0.89 0.10 0.01
Matches are distributed among these distances:
630 89 0.15
631 375 0.64
632 1 0.00
633 118 0.20
634 6 0.01
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (631 bp):
CCATTCTTTCAAGATTAGGAACCAAGAATGTATTCCCTCTATTAGGATACTTGACATTGATGCTT
TGGTGTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTGATAGAACCAAAGTTTGTCTCTTACAAAA
GACAATATGAATAGTCATACTAATCCCTAATCTTTTCAGGATTAGACACCATAAACATAGTCTAC
TTATAAGGATACACGATATTGACGCTTAGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTA
TAACGTCTAAGTTCGTACCTCAAACGAAACAAACATAGATTCTAGTAATGATCTTCATTAATTTT
GTGATTAGGCACTATAAACAGATTATCCCCATTAGGGTAAATGATATTGATGATTTTCTTCCACA
TGGAAATGTTTCCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCCCATTAATAAGGCAAAAAT
TGATTCTCAGAACAATCTCCATTCTTTTCAAGATTGGGAACCAAAAACACACTCCCTTCAAAAGG
ATACATGACATTATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTGGTTAGAATCA
AAGTTTGCCTTTTAAAGAAAACAAACATGAATAGTCATACCAATCC
Found at i:352784 original size:476 final size:476
Alignment explanation
Indices: 351066--357798 Score: 7877
Period size: 476 Copynumber: 14.2 Consensus size: 476
351056 GTCATACTAA
* * * *** *
351066 TCCCCATTC-TTTCAGGATTAGGAACCAAGAATGTATTCCCTTCATTAGGATACTTGACATTGAT
1 TCCCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGAT
*
351130 GCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCG-TTTTGATAGAACCAAAGTTTGTCTCTTA
66 GCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTA
* * * *
351194 CAA-AAGAC--ATATGAATAGTCATACTAATCCCTAATCTTTTCAGGATTAGGCACCGTAATCAT
131 -AATAAGACAAACATGAATAGTCATACTAATCCCTATTCTTTTCAGGATTAGGCACCATAAACAT
* * * * * *
351256 AGTCTACTTATAAGGATACATGATATTGATGCTTAGGTTTCGTAAGAAAGGCTTTTTTCCCACCA
195 AGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCA
* * * * * * *
351321 ATTTTTATAACGTCTAAGTTCGTGCCTTAAATGAGACAAATATAGATTCTAGTAATGGTCTTCAT
260 ATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGTCAAACATGGATTCTAGTAATGATCTTCAT
* * * *
351386 TCATTTTGTGATTAGGCACTATAAACAGATTTTCCCCATTAGGGTAAATGATATTGATGATTTTC
325 TCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTC
*** *
351451 TTCCACATGGAAATGTTTCCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCCCATT-AATAAG
390 TTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCC-TTAAATAAG
* * * *
351515 GCAGGCATTGATTCTCGGAACAA
454 GCAAGCATTGATTCTCGTAATAG
* * **
351538 TCTCCATTCTTTTCAAGATTGGGAACTAAAAACACATTCCCTTCAAAAGGATACATGACATT-AT
1 TCCCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGAT
* * * * * *
351602 GCTTTGGTGTCGCAGGAAAAGCTTTTCTTTCAACCGTTTTGGTTAGAATCAAAGTTTGCCTTTTC
66 GCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTA
* * * * * * *
351667 AAGAAAACAAACATGAATAGTCATTCCAAT-CCTCATTTTTTTCAAGATTAGGCACCATAAAAAT
131 AATAAGACAAACATGAATAGTCATACTAATCCCT-ATTCTTTTCAGGATTAGGCACCATAAACAT
* * * * *
351731 TGCCTTCTTATAAGGATACACAATATTGATGCTTTGGTTTTGCAAGAAAGGCTTTCTTCCCACCA
195 AGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCA
* * * * *
351796 ATTTTTATAATGTCTAAGTTTGTGCCTCAAATGAGACAAACAAGGATTCTAGTAATGA---TCAT
260 ATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGTCAAACATGGATTCTAGTAATGATCTTCAT
* * * * *
351858 TCATTTTTTGATTAGGCACTGTAAACATATTCTCCTCGTTAGGGTAAATGATATTGATGATTTTC
325 TCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTC
* * * * * * *
351923 TTTTGCGTGGAAATCATTT-CTTTGCCCTATTTTCCGTAAAATCAAAATTCAACTCTTAAATATG
390 TTTTGCATGGAAAT-GTTTCCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAG
* * * *
351987 ACAAGGATCGATTCTTGTAATAG
454 GCAAGCATTGATTCTCGTAATAG
* * * * ** * *
352010 TCTCTAATGTTTTCAAGATTGGGAACCATTAACACATT-CCTTCAATAGGATACATGACATTGAC
1 TCCCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGAT
* * * *
352074 GCTTTGGTATCGAAAGAAAAGCTTTTCTTTCAACCGTTTTTGTTAGAATCAAAGTTTGTCTCTTT
66 GCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTA
** * * *
352139 AATAAGATGAACATGAATA-TCATACTAATCCCCATTCTTTTCAAGATTAGGCACCACAAACATA
131 AATAAGACAAACATGAATAGTCATACTAATCCCTATTCTTTTCAGGATTAGGCACCATAAACATA
* **
352203 GTCTTCTCATAAGAATACACGATATTGACACTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAA
196 GTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAA
* * * *
352268 TTTTTGTAAAGTCAAAGTCCGTGGCTCAAATGAGTCAAACATGGATTCTAGTAATGATTTTCATT
261 TTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGTCAAACATGGATTCTAGTAATGATCTTCATT
* * * ** *
352333 CATTTTGTGATTAGGCATTATAAACACAATCTCTTCATTACTATAAATGATATTGATGATTTTAT
326 CATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCT
* * *
352398 TTTGCATAGAAATGTTTCCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAAAAAGGT
391 TTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGGC
352463 AAGCATTGATTCTCGTAATAG
456 AAGCATTGATTCTCGTAATAG
* * * * *
352484 TCCCCTTTAGTCTT-AAGATTGGGAACCAAAAACATATTCCCTTCATTAGGATACATGATATTGA
1 TCCCCATT-CTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGA
* ** * * * * **
352548 CGCTTTGG-GATCATAAGAAAAGCTATTCTTTCTACCATTTTTGATAGAATTAAAGTTTGTGACT
65 TGCTTTGGTG-TCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCT
* * * * * **
352612 TAACTAAAACAAACATGAATAGTCATACCAATCCCTATTCTTTTCTGGATTAGGCACCCTAAATG
129 TAAATAAGACAAACATGAATAGTCATACTAATCCCTATTCTTTTCAGGATTAGGCACCATAAACA
* * *
352677 TAGTCTTCTCGTTAGGATAGACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTC-TCCCTAC
194 TAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCC-AC
* * * * * * * *
352741 TAATTTTTATAAATTCTATGCTCGTGCCTCAAATGAGTCAAACATGGGTTCTAGTAATTATCTTT
258 CAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGTCAAACATGGATTCTAGTAATGATCTTC
* *
352806 ATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCAAT-GCCATAAATGATATTGATGATT
323 ATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAG-GATAAATGATATTGATGATT
* * * *
352870 TTATTTTGAATGAAAATGTTTCCTTTGCCCTATTTTCCTTGAAATCAAAGTTCATTCCC-TAAAT
387 TTCTTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCTTAAAATCAAAGTTCA-TCCCTTAAAT
*
352934 AAGGCAAGCATTGATTATCGTAACT-G
451 AAGGCAAGCATTGATTCTCGTAA-TAG
* * * * * * *
352960 TCCCAATTCTTCTCAAGATTTGGAACCAAAAGCATATTCCCTTCGTTAGGATACATGGCATTGAT
1 TCCCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGAT
* * * * * *
353025 GCTTTGG-GATCGCAAGAAAAGCTATTCTTTCCACC-ATTTTGATAAAATCAAAGTTTATTTCTT
66 GCTTTGGTG-TCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTT
** * * *
353088 AAATAAGACAAACATGAATAGTCATACTAATCCCTATTCTTTTCAATATTACGTACCATAAAGAT
130 AAATAAGACAAACATGAATAGTCATACTAATCCCTATTCTTTTCAGGATTAGGCACCATAAACAT
* * * * * *
353153 AGTATTCTCATTAA-GATAGATGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTCTTCCCTCT
195 AGTCTTCTCA-TAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACC
* * * *
353217 AATTTTCGTAAAGTCTAAGTTTGTGCCTCAAATAAGTCAAACACGGATTCTAGTAATGATCTTCA
259 AATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGTCAAACATGGATTCTAGTAATGATCTTCA
*
353282 TTCATTTTGTGATTAGGCACTATAAACACATTCTCCCCATTAGGATAAATGATATTGATGATTTT
324 TTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTT
* * *
353347 -TTTTCGCATGGAAATGTTTCCTTTGCCTTATTTTCCTTAAAATCAAAGTTAATCCCATAAATAA
389 CTTTT-GCATGGAAATGTTTCCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAA
* * * *
353411 GGCAACCGTTGATTCTCGAAACAG
453 GGCAAGCATTGATTCTCGTAATAG
* * * ** * *
353435 TCTCCATTCTTTTCAAGATAGGGAACCAAAAACACATTCCATTCAAAAGGATACATGGCATTAAT
1 TCCCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGAT
* * * * * * *
353500 GCTTTGGTGTTGCAAGAAAAGTTTTTCTTTCATCCGTTTTGGTTAGAATCAAAGTTTATCTCTTC
66 GCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTA
* * *
353565 AATAAGACAAACATGAATAGTCATACTAATCCCCACTCTTTT-ATGGATTAGACACCATAAACAT
131 AATAAGACAAACATGAATAGTCATACTAATCCCTATTCTTTTCA-GGATTAGGCACCATAAACAT
* * * * * *
353629 TGTCTTCTTATAAGGATACACGATATTTATGCTTTGGCTTCGCATGAAAGGCTTTCTTCCCACTA
195 AGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCA
* * * * *
353694 ATTTTTATAATGTCTAAGTTCGAGCCTCAAATAAGTCAAACATGGATTCTAGCAATG-TCTTCAT
260 ATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGTCAAACATGGATTCTAGTAATGATCTTCAT
* * * *
353758 TCATTTCGTGATTAGACA-TAATAAACACA-TC-CCTTTATTAGGATAAAAGATATTGATGATTT
325 TCATTTTGTGATTAGGCACT-ATAAACACATTCTCC-TCATTAGGATAAATGATATTGATGATTT
* * ** * * * * * *
353820 TCTTTTGCATGAAAATCTTTTGTTTACCCCATTTTCATTAAAATCAAAATTCATCCCTCAAATAT
388 TCTTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAA
* *
353885 GACACA-CATCGATTCTCGTAATAG
453 GGCA-AGCATTGATTCTCGTAATAG
** * * ** * *
353909 TTTCCATTCTTTTTAAGATTGGGAACCAAGAATGCATTCCCTTCGTTAGGATACACGACATTGAT
1 TCCCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGAT
*
353974 GCTTTGGTGTCACAAGAAAAGCTTTTCTTTCAACCG-TTTTGATAGAATCAAAGTTTGTCTCTTA
66 GCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTA
*
354038 AATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATA
131 AATAAGACAAACATGAATAGTCATACTAATCCCTATTCTTTTCAGGATTAGGCACCATAAACATA
* * * * ** *
354103 GTCTACTTATAAGGATACACGTTATTGACGCTTTGGTTTCATAAGAAAGGCTTTCTTCCCATCAA
196 GTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAA
* *
354168 TTTTTGTAATGTCTAAGCTT-GTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCAT
261 TTTTTGTAAAGTCTAAG-TTCGTGCCTCAAATGAGTCAAACATGGATTCTAGTAATGATCTTCAT
* * * *
354232 TCATTTTGTGATTAGGTACTATAAACACATTCTCCCCATTAGAATAAATGATATTGTTGATTTTC
325 TCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTC
* * **
354297 TTTTGCATGGAAATGTTTCCTTTGCCTTATTTTCCATAAAATTGAAGTTCATCCCATT-AATAAG
390 TTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCC-TTAAATAAG
* ** *
354361 GCAAGCATGGATTCTCAAAAAAG
454 GCAAGCATTGATTCTCGTAATAG
* * *
354384 -CCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCTCTTCGA-TAAGATACCTGACATTG
1 TCC-CCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTC-ATTAGGATACATGACATTG
* * * * * *
354447 TTGCTTTGGTCTCGCAAGAGAAGCTTTTCTTTCAACCGTTTTGGTTAGAATCAAAGTTTGCCTCT
64 ATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCT
* ** * * *
354512 TAAATAAGACAAATAAAAATAGTCATACTAATCTCC-ATTTTTTTCAGGATTAGGCACTACAAAC
129 TAAATAAGACAAACATGAATAGTCATACTAATC-CCTATTCTTTTCAGGATTAGGCACCATAAAC
* ** * *
354576 ATAGTCTTCTCATTAGGATACACGATATTGACACATTGGTTTCGCAAGAAAGGC-TTCTTCCCAA
193 ATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCAC
* ** * *
354640 TAATTTTTGTAAAGTCTAAG-TCGGTGGTTGAAATGAGTCAAACATGGATTCAAGTAATGATCTT
258 CAATTTTTGTAAAGTCTAAGTTC-GTGCCTCAAATGAGTCAAACATGGATTCTAGTAATGATCTT
* * **
354704 CATTCATTTTGTGATTAGGCACTATAAACACAATCTCTTCATTACTATAAATGATATTGATGATT
322 CATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATT
* * * * *
354769 TTATTTTGCAAGGAAATGTTATCTTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCATAAAA
387 TTCTTTTGCATGGAAATGTT-TCCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAAT
*
354834 AAAGCAAGCATTGATTCTCGTAATAG
451 AAGGCAAGCATTGATTCTCGTAATAG
* * * * * *
354860 TCCCCATTCTTCTCAAGATTGGGAACCATAAATATATTCCCTTCTTTAGGATACATGACATTGAC
1 TCCCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGAT
* * * * * *
354925 ACTTTGG-GATAGCAAGAAAAGCTATTCTTTCTACCGTTTTTGATAGAATCAAAATTTGTGTCTT
66 GCTTTGGTG-TCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTT
* * * * **
354989 AACTAAGGCAAACATGAATAGTCATACCAATCCCTATTCTTTTCCGGATTAGGCACCATAAATGT
130 AAATAAGACAAACATGAATAGTCATACTAATCCCTATTCTTTTCAGGATTAGGCACCATAAACAT
* * * * * *
355054 AGTCTTCTCGTTAGGATAGACGATATTGATGCTTTGGTTTCGCAAGAAACGCTTTCTCCCCACAA
195 AGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCA
* * * *
355119 ATTTTTATAAAGTCTAAGTTCATGCCTCAAATGAGTCAAACATGGATTATAGTAATGATCTTTAT
260 ATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGTCAAACATGGATTCTAGTAATGATCTTCAT
* * * ** *
355184 TTATTTTGTGATTAGGCACTATAAACACATTCTCCTTAGTACCATAAATGATATTGATGATTTTA
325 TCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTC
*
355249 TTTTGAATGGAAATGTTTCCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGG
390 TTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGG
*
355314 CAAGCATTGATTCTCATAACT-G
455 CAAGCATTGATTCTCGTAA-TAG
* * * * *
355336 TCCCTATTCTTCTCAAGATTGGGAA-CAAAAAGCATC-TTCCCTTCATTGGGATACATGGCATTA
1 TCCCCATTCTTTTCAAGATTGGGAACCAAAAA-CA-CATTCCCTTCATTAGGATACATGACATTG
* * * * *
355399 ATGCTTTGG-GATCGCAAGAAAAGCTATTCTTTCCACCATTTTTGATAAAATCAAAGTTTGTTTC
64 ATGCTTTGGTG-TCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTC
* * ***
355463 TTAAATAAGACAAACATGAATAGTCATACTAATTCCTATTCTTTTCAAGATTACATACCATAAAC
128 TTAAATAAGACAAACATGAATAGTCATACTAATCCCTATTCTTTTCAGGATTAGGCACCATAAAC
* * * * * *
355528 ATAGTATTCTCATTAA-GATAGATGATATTGATACTTTGGTTTCCCAAGAAAGGCTTTCTTCCCT
193 ATAGTCTTCTCA-TAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCA
* * *
355592 CCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATAAGTCAAACATGGATTCAAGTAATGATCTT
257 CCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGTCAAACATGGATTCTAGTAATGATCTT
* * *
355657 CATTCATTTTGTGATTAGGCACTGTAAACACATTCTCCCCATTAGGATAAATGATATTAATGATT
322 CATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATT
*** * * * *
355722 TTCTCCCGCATGGAAATGTTTCCTTTGACTTATTTTCCTTAAAAT-AAAATTAATCCCATT-AAT
387 TTCTTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCC-TTAAAT
* * * *
355785 AAGGCAAGCGTTGATTCCCGAAACAG
451 AAGGCAAGCATTGATTCTCGTAATAG
* * * ** *
355811 TCTCCATTCTTTTCAAGATAGGGAACCAAAAACACATTCCTTTCAAAAGGATACATGACATTAAT
1 TCCCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGAT
* * * * * * * *
355876 GATTTGGTGTCGCAAGAAAAGTTTTTCTTTCATCCATTTTGGTTAGAATCAAAGTTTATCTCTTC
66 GCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTA
* * * * ** *
355941 AATAAGACATACATCAATAGTCATACTAATCCCCACTCTTTTGTGGATTAGGCACCATAAACATT
131 AATAAGACAAACATGAATAGTCATACTAATCCCTATTCTTTTCAGGATTAGGCACCATAAACATA
*
356006 GTCTTCGT-ATAAGGATACACGATATTGATGCTTTGGTTTCGCATGAAAGGCTTTCTTCCCACCA
196 GTCTTC-TCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCA
* * * * *
356070 ATTTTTATAACGTCTAAGTTCGTGCCTCAAATAAGTCAAACATAGATTCTAGCAATG-TCTTCAT
260 ATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGTCAAACATGGATTCTAGTAATGATCTTCAT
** * * * *
356134 TCATTTCATGATTAGACACAATAAACACATTCTCTTTATTAGGATAAATGATATTGATGATTTTC
325 TCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTC
* * * * * *
356199 TTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAGTCAAAATTCATCCCTTAAATATGA
390 TTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGG
* * *
356264 CAAGCATCGATTCTCATAACAG
455 CAAGCATTGATTCTCGTAATAG
* * ** * *
356286 TCTCCATTCTTTTCAAGATTGGGAACCAAGAATGCATTCCCTTCAATAGGATACATGACGTTGAT
1 TCCCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGAT
* * *
356351 GCTTTGGTGTCACATTG-AAAGCTTTCCTTTCAACCG-TTTTGATAGAATCAAAGTTTGTCTCTT
66 GCTTTGGTGTCGCA-AGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTT
356414 AAATAAGACAAACATGAATAGTCATACTAAT-CCTCATAT-TTTTCAGGATTAGGCACCATAAAC
130 AAATAAGACAAACATGAATAGTCATACTAATCCCT-AT-TCTTTTCAGGATTAGGCACCATAAAC
* * * * * * *
356477 GTAGTCTACTTATAAGGATACATGATATTGACT-TTTTGGTTTCACAAGAAAGGCCTTCTTCCCA
193 ATAGTCTTCTCATAAGGATACACGATATTGA-TGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCA
* * *
356541 CCAATTTTTGTAATGTCTAAGTTCGTGCCTCAAATAAGACAAACATGGATTCTAGTAATGATCTT
257 CCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGTCAAACATGGATTCTAGTAATGATCTT
* * * *
356606 CATTCATTTTGTGGTTAGGCACTATAAACACATTCTCCCCATTAGGGTAAATGATATTAATGATT
322 CATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATT
* **
356671 TTCTTTTGCATGGAAATATTTCCTTTGCGTTATTTTCCTTAAAATCAAAGTTCATCCCATT-AAT
387 TTCTTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCC-TTAAAT
* *
356735 AAGGCAAGCATTGATTCTGGGAATAG
451 AAGGCAAGCATTGATTCTCGTAATAG
* * *
356761 -CCTCCATTCTTTTCAAGATT-GAAGACCAAAAACACATTCCCTTCAATAGGATACTTGACATTG
1 TCC-CCATTCTTTTCAAGATTGGGA-ACCAAAAACACATTCCCTTCATTAGGATACATGACATTG
** * *
356824 ATGCTTTGGCCTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTGGTTAGAATCGAAA-TTTGTCTC
64 ATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATC-AAAGTTTGTCTC
* *
356888 TTAAATAAGACAAATAAGAATAGTCATACTAATCGCC-ATTCTTTTCAGGATTAGGCACCATAAA
128 TTAAATAAGACAAACATGAATAGTCATACTAATC-CCTATTCTTTTCAGGATTAGGCACCATAAA
* * * * *
356952 CATAGTCTTTTCAAAAGGATACACGTTATTGATGCTTCGGTTTCGCAAGAAAGGTTTTCTTCCCA
192 CATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCA
* * * *
357017 CCAAGTTTTT-TATTA-TCTAAGTTCGTGCCTCATATGAGACCAACATGGATTCTAGTAATGATC
257 CCAA-TTTTTGTA-AAGTCTAAGTTCGTGCCTCAAATGAGTCAAACATGGATTCTAGTAATGATC
* * * *
357080 TTCATTCATTTTGTGATTAGGCACTATAAACACATTGTCCTCCTTAGGATTAATGATGTTGATGA
320 TTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGA
* * * * ** * * * *
357145 TTTTATTTTACGTGGAAATCTTTTTTTTGCCCTTTTTTCTTTAAAATCAAAATTCA-CTGCTTAA
385 TTTTCTTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATC-CCTTAA
* * *
357209 ATATGACAAGCATTGATTCTCGTAACAG
449 ATAAGGCAAGCATTGATTCTCGTAATAG
* * ** * *
357237 TCTCCATTCTATTCAAGATTGGGAAGTAATAACACATTCCCTTGATTAGGATACATGACATTGAT
1 TCCCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGAT
* * * * * * * *
357302 GCTTTGGTGT-GAAAAGAAATGCTTTTTTTTCAATCGCTTTTGTTGGAATCAAAGTTCGTCTCTT
66 GCTTTGGTGTCG-CAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTT
* * * * * ** *
357366 TAATAAGACGAACATGAATAGTCATACTAATCCCCATTCTTTTTAGGATTTGGTGCCACAAACAT
130 AAATAAGACAAACATGAATAGTCATACTAATCCCTATTCTTTTCAGGATTAGGCACCATAAACAT
* * * *
357431 AGTCTTCACATAAGGATACACGATATTGATGCTTTGGCTTCACAAGAATGGCTTTCTTCCCACCA
195 AGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCA
* * *
357496 ATTTTTGTGAAGTCTAAGTCCGTGCCTCAAATGAGTCAAACGTGGATTCTAGTAATGATCTTCAT
260 ATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGTCAAACATGGATTCTAGTAATGATCTTCAT
* * ** *
357561 TCATTTTGTGATTAGGCACTACAAACACGTTCTCCTCATTACTATAAATGATATTGATGATTTTA
325 TCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTC
* * * * *
357626 TTTTGTAGGGAAATGTTTCCTTTGTCATATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGG
390 TTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGG
* * *
357691 CAAGCATTCATTCTCATAAGAG
455 CAAGCATTGATTCTCGTAATAG
* * * * *
357713 TCCCCATTCTTTTCAAGATTGGGAACAAAAAACATATTCCATTCATTAGGATACTTGACATTGAC
1 TCCCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGAT
* * *
357778 GGTTAGG-ATCGCAAGAAAAGC
66 GCTTTGGTGTCGCAAGAAAAGC
357799 ACCAAAAATG
Statistics
Matches: 5298, Mismatches: 862, Indels: 199
0.83 0.14 0.03
Matches are distributed among these distances:
471 166 0.03
472 279 0.05
473 267 0.05
474 663 0.13
475 1649 0.31
476 2109 0.40
477 161 0.03
478 4 0.00
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.36
Consensus pattern (476 bp):
TCCCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGAT
GCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTA
AATAAGACAAACATGAATAGTCATACTAATCCCTATTCTTTTCAGGATTAGGCACCATAAACATA
GTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAA
TTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGTCAAACATGGATTCTAGTAATGATCTTCATT
CATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCT
TTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGGC
AAGCATTGATTCTCGTAATAG
Found at i:358129 original size:379 final size:379
Alignment explanation
Indices: 357443--358177 Score: 1175
Period size: 379 Copynumber: 1.9 Consensus size: 379
357433 TCTTCACATA
* * * *
357443 AGGATACACGATATTGATGCTTTGGCTTCACAAGAATGGCTTTCTTCCCACCAATTTTTGTGAAG
1 AGGATACACGATATTGATGCTTTAGCTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTATAAAG
* *
357508 TCTAAGTCCGTGCCTCAAATGAGTCAAACGTGGATTCTAGTAATGATCTTCATTCATTTTGTGAT
66 TCTAAGTCCGTACCTCAAATGAGTCAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGAT
* *
357573 TAGGCACTACAAACACGTTCTCCTCATTACTATAAATGATATTGATGATTTTATTTTGTAGGGAA
131 TAGGCACTACAAACACATTCTCCTCATTACTATAAATGATATTGATGATTTTATTTTGCAGGGAA
* * * *
357638 ATGTTTCCTTTGTCATATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTCATT
196 ATGTTTCCTTTGCCATATTTTCCTTAAAATCAAAGTTCATCCCCTAAATAAGGCAAGCATTCAAT
* * *
357703 CTCATAAGAGTCCCCATTCTTTTCAAGATTGGGAACAAAAAACATATTCCATTCATTAGGATACT
261 CTCATAACAGTCCCCATTCTTCTCAAGATTGGGAACAAAAAACATATTCCATTCATTAGGATACA
*
357768 TGACATTGACGGTTAGGATCGCAAGAAAAGCACCAAAAATGTAGTCTTCTCGTT
326 TGACATTGACAGTTAGGATCGCAAGAAAAGCACCAAAAATGTAGTCTTCTCGTT
* * * * * *
357822 AGGATAGACGGTATTGATGCTTTAGTTTGATAAGAAAGGCTTTC-TCCCTACTAATTTTTATAAA
1 AGGATACACGATATTGATGCTTTAGCTTCACAAGAAAGGCTTTCTTCCC-ACCAATTTTTATAAA
*
357886 GTCTAAGTTCGTACCTCAAATGAGTCAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGA
65 GTCTAAGTCCGTACCTCAAATGAGTCAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGA
357951 TTAGGCACTACAAACACATTCTCCTCATTACTATAAATGATATTGATGATTTTATTTTGCAGGGA
130 TTAGGCACTACAAACACATTCTCCTCATTACTATAAATGATATTGATGATTTTATTTTGCAGGGA
* *
358016 AATGTTTCCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCCTAAATAAGGCAAGCATTGAA
195 AATGTTTCCTTTGCCATATTTTCCTTAAAATCAAAGTTCATCCCCTAAATAAGGCAAGCATTCAA
* * * *
358081 TCTCGTAACAGTCCCTATTCTTCTCAAGATTGGGAACCAAAAACATATTCCCTTCATTAGGATAC
260 TCTCATAACAGTCCCCATTCTTCTCAAGATTGGGAACAAAAAACATATTCCATTCATTAGGATAC
* *
358146 ATGACATTGACATTTGGGATCGCAAGAAAAGC
325 ATGACATTGACAGTTAGGATCGCAAGAAAAGC
358178 TATTCTTTCT
Statistics
Matches: 324, Mismatches: 31, Indels: 2
0.91 0.09 0.01
Matches are distributed among these distances:
378 4 0.01
379 320 0.99
ACGTcount: A:0.31, C:0.19, G:0.16, T:0.34
Consensus pattern (379 bp):
AGGATACACGATATTGATGCTTTAGCTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTATAAAG
TCTAAGTCCGTACCTCAAATGAGTCAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGAT
TAGGCACTACAAACACATTCTCCTCATTACTATAAATGATATTGATGATTTTATTTTGCAGGGAA
ATGTTTCCTTTGCCATATTTTCCTTAAAATCAAAGTTCATCCCCTAAATAAGGCAAGCATTCAAT
CTCATAACAGTCCCCATTCTTCTCAAGATTGGGAACAAAAAACATATTCCATTCATTAGGATACA
TGACATTGACAGTTAGGATCGCAAGAAAAGCACCAAAAATGTAGTCTTCTCGTT
Found at i:358604 original size:855 final size:854
Alignment explanation
Indices: 357032--358621 Score: 2185
Period size: 855 Copynumber: 1.9 Consensus size: 854
357022 TTTTTTATTA
* * *
357032 TCTAAGTTCGTGCCTCATATGAGACCAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGAT
1 TCTAAGTTCGTACCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGAT
* * * * * *
357097 TAGGCACTATAAACACATTGTCCTCCTTAGGATTAATGATGTTGATGATTTTATTTTACGTGGAA
66 TAGGCACTACAAACACATTCTCCTCATTACGATAAATGATATTGATGATTTTATTTTACGTGGAA
** * * * * * *
357162 ATCTTTTTTTTGCCCTTTTTTCTTTAAAATCAAAATTCACTGCTTAAATATGACAAGCATTGATT
131 ATCTTTCCTTTGCCCTATTTTCCTTAAAATCAAAATTCACTCCCTAAATAAGACAAGCATTGAAT
** * *
357227 CTCGTAACAGTCTCCATTCTATTCAAGATTGGGAAGTAATAACACATTCCCTTGATTAGGATACA
196 CTCGTAACAGTCTCCATTCTATTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACA
* * * * * * *
357292 TGACATTGATGCTTTGGTGTGAAAAGAAATGCTTTTTTTTCAATCGCTTTTGTTGGAATCAAAGT
261 TGACATTGA-GCTTTGGTGTGAAAAGAAAAGCTATTCTTTCAACCACTTTTGATAGAATCAAAGT
* * * * * **
357357 TCGTCTCTTTAATAAGACGAACATGAATAGTCATACTAATCCCCATTCTTTTTAGGATTTGGTGC
325 TCGTCTCTTTAATAAGACAAACATAAACAGTCATACCAATCCCCATTCTTTTTAGGATTAGGCAC
*
357422 CACAAACATAGTCTTCACATAAGGATACACGATATTGATGCTTTGGCTTCACAAGAATGGCTTTC
390 CACAAACATAGTCTTCACATAAGGATACACGATATTGATGCTTTGGCTTCACAAGAAAGGCTTTC
* * * * * * *
357487 TTCCCACCAATTTTTGTGAAGTCTAAGTCCGTGCCTCAAATGAGTCAAACGTGGATTCTAGTAAT
455 TCCCCACCAATTTTTATAAAGTCAAAGTCCGTCCCTCAAATAAGTCAAACATGGATTCTAGTAAT
* * * *
357552 GATCTTCATTCATTTTGTGATTAGGCACTACAAACACGTTCTCCTCATTACTATAAATGATATTG
520 GATCTTCATTCATTTTGTGATTAGGCACTACAAACACATTCTCCTCAATACCATAAATGATATTA
* * * *
357617 ATGATTTTATTTTGTAGGGAAATGTTTCCTTTGTCATATTTTTCTTAAAATCAAAGTTCATCCCT
585 ATGATTTTATTTTGAAGGGAAATGTTTCCTTTGCCATATTGTCCTTAAAATCAAAGTTCATCCCT
*
357682 TAAATAAGGCAAGCATTCATTCTCATAAGAGTCCCCATTCTTTTCAAGATTGGGAACAAAAAACA
650 TAAATAAGGCAAGCATTCATTCTCATAACAGTCCCCATTCTTTTCAAGATTGGGAACAAAAAACA
357747 TATTC-CATTCATTAGGATACTTGACATTGACGGTTAGGATCGCAAGAAAAGCACCAAAAATGTA
715 TATTCTC-TTCATTAGGATACTTGACATTGACGGTTAGGATCGCAAGAAAAGCACCAAAAATGTA
357811 GTCTTCTCGTTAGGATAGACGGTATTGATGCTTTAGTTTGATAAGAAAGGCTTTCTCCCTACTAA
779 GTCTTCTCGTTAGGATAGACGGTATTGATGCTTTAGTTTGATAAGAAAGGCTTTCTCCCTACTAA
357876 TTTTTATAAAG
844 TTTTTATAAAG
*
357887 TCTAAGTTCGTACCTCAAATGAGTCAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGAT
1 TCTAAGTTCGTACCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGAT
* *
357952 TAGGCACTACAAACACATTCTCCTCATTACTATAAATGATATTGATGATTTTATTTTGCAG-GGA
66 TAGGCACTACAAACACATTCTCCTCATTACGATAAATGATATTGATGATTTTATTTTAC-GTGGA
* * *
358016 AATGTTTCCTTTGCCCTATTTTCCTTAAAATCAAAGTTCA-TCCCCTAAATAAGGCAAGCATTGA
130 AATCTTTCCTTTGCCCTATTTTCCTTAAAATCAAAATTCACT-CCCTAAATAAGACAAGCATTGA
*
358080 ATCTCGTAACAGTC-CCTATTCT-TCTCAAGATTGGGAACCAAAAACATATTCCCTTCATTAGGA
194 ATCTCGTAACAGTCTCC-ATTCTAT-TCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGA
* * *
358143 TACATGACATTGA-CATTTGG-GATCG-CAAGAAAAGCTATTCTTTCTACCATTTTTGATAGAAT
257 TACATGACATTGAGC-TTTGGTG-T-GAAAAGAAAAGCTATTCTTTCAACCACTTTTGATAGAAT
* * * * *
358205 TAAAGTTTGTGTC-TTAACTAAGACAAACATAAACAGTCATACCAATCCCTATTCTTTTTCGGAT
319 CAAAGTTCGTCTCTTTAA-TAAGACAAACATAAACAGTCATACCAATCCCCATTCTTTTTAGGAT
* * * * * * * * *
358269 TAGGCACCATAAATATAGTCTTCTCGTTAGGATATACGGTATTGATGCTTTGGTTTCCCAAGAAA
383 TAGGCACCACAAACATAGTCTTCACATAAGGATACACGATATTGATGCTTTGGCTTCACAAGAAA
* **
358334 GGCTTTCTCCCCACTAATTTTTATAAAGTCAAAGTTTGTCCCTCAAATAAGTCAAACATGGATTC
448 GGCTTTCTCCCCACCAATTTTTATAAAGTCAAAGTCCGTCCCTCAAATAAGTCAAACATGGATTC
* * *
358399 TAGTAATGATCTTCATTCATTTTTTTGATTAGGCACTATAAACACATTCTCCTCAATACCGTAAA
513 TAGTAATGATCTTCATTCA-TTTTGTGATTAGGCACTACAAACACATTCTCCTCAATACCATAAA
* *
358464 TGATATTAATGATTTTATTTTGAATGGAAATGTTTCCTTTGCCCTATTGTCCTTAAAATCAAAGT
577 TGATATTAATGATTTTATTTTGAAGGGAAATGTTTCCTTTGCCATATTGTCCTTAAAATCAAAGT
* * * *
358529 TCATCCCTTAAATAAGGCAAGCATTGATTCTTGA-AACTGTCCCTATTCTTCTT-AAGATTGGGA
642 TCATCCCTTAAATAAGGCAAGCATTCATTC-TCATAACAGTCCCCATTCTT-TTCAAGATTGGGA
*
358592 ACCAAAAACATATTCTCTTCATTAGGATAC
705 ACAAAAAACATATTCTCTTCATTAGGATAC
358622 ATGGCATTTA
Statistics
Matches: 634, Mismatches: 89, Indels: 24
0.85 0.12 0.03
Matches are distributed among these distances:
853 6 0.01
854 213 0.34
855 409 0.65
856 6 0.01
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (854 bp):
TCTAAGTTCGTACCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGAT
TAGGCACTACAAACACATTCTCCTCATTACGATAAATGATATTGATGATTTTATTTTACGTGGAA
ATCTTTCCTTTGCCCTATTTTCCTTAAAATCAAAATTCACTCCCTAAATAAGACAAGCATTGAAT
CTCGTAACAGTCTCCATTCTATTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACA
TGACATTGAGCTTTGGTGTGAAAAGAAAAGCTATTCTTTCAACCACTTTTGATAGAATCAAAGTT
CGTCTCTTTAATAAGACAAACATAAACAGTCATACCAATCCCCATTCTTTTTAGGATTAGGCACC
ACAAACATAGTCTTCACATAAGGATACACGATATTGATGCTTTGGCTTCACAAGAAAGGCTTTCT
CCCCACCAATTTTTATAAAGTCAAAGTCCGTCCCTCAAATAAGTCAAACATGGATTCTAGTAATG
ATCTTCATTCATTTTGTGATTAGGCACTACAAACACATTCTCCTCAATACCATAAATGATATTAA
TGATTTTATTTTGAAGGGAAATGTTTCCTTTGCCATATTGTCCTTAAAATCAAAGTTCATCCCTT
AAATAAGGCAAGCATTCATTCTCATAACAGTCCCCATTCTTTTCAAGATTGGGAACAAAAAACAT
ATTCTCTTCATTAGGATACTTGACATTGACGGTTAGGATCGCAAGAAAAGCACCAAAAATGTAGT
CTTCTCGTTAGGATAGACGGTATTGATGCTTTAGTTTGATAAGAAAGGCTTTCTCCCTACTAATT
TTTATAAAG
Found at i:360352 original size:951 final size:949
Alignment explanation
Indices: 357822--373454 Score: 20524
Period size: 951 Copynumber: 16.5 Consensus size: 949
357812 TCTTCTCGTT
* * * * * * * * *
357822 AGGATAGACGGTATTGATGCTTTAGTTTGATAAGAAAGGCTTTC-TCCCTACTAATTTTTATAAA
1 AGGATACACGATATTGACGCTTTGGTTTCACAAGAAAGGCTTTCTTCCC-ACCAATTTTTGTAAT
* *
357886 GTCTAAGTTCGTACCTCAAATGAGTCAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGA
65 GTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGA
* *** * *
357951 TTAGGCACTACAAACACATTCTCCTCATTACTATAAATGATATTGATGATTTTATTTTGCAG-GG
130 TTAGGCACTATAAACACATTCTCC-CATTAGGGTAAATGATATTGATGATTTTCTTTTGC-GTGA
* * * *
358015 AAATGTTTCCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCCTAAATAAGGCAAGCATTGA
193 AAATGTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCCCATTAATAAGGCAAGCATTGA
* * * * * *
358080 ATCTCGTAACAGTCC-CTATTCTTCTCAAGATTGGGAACCAAAAACATATTCCCTTCATTAGGAT
258 TTCTCGGAACAG-CCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCAATAGGAT
* ** * * * * *
358144 ACATGACATTGA--CATTTGGGATCGCAAGAAAAGCTATTCTTTCTACCATTTTTGATAGAATTA
322 ACTTGACATTGATGC-TTTGGTCTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGTTAGAATCA
* * * * *
358207 AAGTTTGTGTCTTAACTAAGACAAACATA-AACAGTCATACCAATCCCTATTCTTTTTC-GGATT
386 AAGTTTGTCTCTTAAATAAGACAAACA-AGAATAGTCATACTAATCCCCATTC-TTTTCAGGATT
* * ** * * * * *
358270 AGGCACCATAAATATAGTCTTCTCGTTAGGATATACGGTATTGATGCTTTGGTTTCCCAAGAAAG
449 AGGCACCATAAACATAGTCTACTTATAAGGATACACGATATTGACGCTTTGGTTTCACAAGAAAG
* * * * * * * * *
358335 GCTTTCTCCCCACTAATTTTTATAAAGTCAAAGTTTGTCCCTCAAATAAGTCAAACATGGATTCT
514 GCTTTCTTCCCACCAATTTTTGTAATGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCT
* * **
358400 AGTAATGATCTTCATTCATTTTTTTGATTAGGCACTATAAACACATTCTCCTCAATACCGTAAAT
579 AGTAATGATCTTCATTCA-TTTTGTGATTAGGCACTATAAACACATTCTCC-CATTAGGGTAAAT
* * * * * * *
358465 GATATTAATGATTTTATTTTGAATGGAAATGTTTCCTTTGCCCTATTGTCCTTAAAATCAAAGTT
642 GATATTGATGATTTTCTTTTGCATGAAAATGTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTT
* * *
358530 CATCCC-TTAAATAAGGCAAGCATTGATTCTTGAAACTGTCC-CTATTCTTCTT-AAGATTGGGA
707 CATCCCATT-AATAAGGCAAGCATTGATTCTCG-AACAG-CCTCCATTCTT-TTCAAGATTGGGA
* * * * * * ** * * * *
358592 ACCAAAAACATATTCTCTTCATTAGGATACATGGCATTTATGCTTTGGGATTGCCAGAACAGCTA
768 ACCAAAAACACATTCCCTTCAATAGGATACTTGACATTGATGCTTTGGTCTCGCAAGAAAAGCTT
* * * *
358657 TTCTTTCCACCTTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAATATGAATAGTCAT
833 TTCTTTCAACCGTTTTTGTTAGAATCAAAGTTTGTCTCTTAAATAAGACAAATAAGAATAGTCAT
* * * * * *
358722 ACCAATCCCCATTCTTTTCAGGATTACGCACCATAAATATAGTATTCTCATTA
898 ACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTACTTA-TA
* * ** * ** *
358775 A-GATAGATGATATTGATACTTTGGTTTCACAAGAAAGGCTTTCTTCCCTCCAATTTCCGTAAAG
1 AGGATACACGATATTGACGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAATG
* * * ** * **
358839 TCTAACTGT-GTGCCTCAAATAAGTCAAACATGGATTCCGGTAACGATCTTCATTCATTTCATGA
66 TCTAAGT-TCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGA
* * * *
358903 TTAGACACAATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAA
130 TTAGGCACTATAAACACATTCTCC-CATTAGGGTAAATGATATTGATGATTTTCTTTTGCGTGAA
* * * * *
358968 AATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAAATTCATCCC-TTAAATATGACAAGAATTGA
194 AATGTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCCCATT-AATAAGGCAAGCATTGA
* * * * * *** * * *
359032 TTCTCGTAATAGTCTCCATTCTTTTCAAAATTGGGAACCAAGATTGCATTCGCTTCATTAGGATG
258 TTCTCGGAACAGCCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCAATAGGATA
* * * * * * * * *
359097 CATGGCATTGATGCTTTGGTGTCACAAGAAAACCTTTTATTTCAATC-ATTTTGATAGAATCAAA
323 CTTGACATTGATGCTTTGGTCTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGTTAGAATCAAA
** * *
359161 GTATACTACCTCTTAAATAAGATAAACACA-AATAGTCATACTCATCCCCATTCTTTTCAGGATT
388 GT-T--TGTCTCTTAAATAAGACAAACA-AGAATAGTCATACTAATCCCCATTCTTTTCAGGATT
*
359225 AGGCACCATAAACGTAGTCTACTTATAAGGATACACGATATTGA-GACTTTGGTTTCACAAGAAA
449 AGGCACCATAAACATAGTCTACTTATAAGGATACACGATATTGACG-CTTTGGTTTCACAAGAAA
* *
359289 GGCTTTCTTCCCACCAATTTTTGTAATGACTAAGTTCGTGCCTCAAATGAGACACACATGGATTC
513 GGCTTTCTTCCCACCAATTTTTGTAATGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTC
* * * *
359354 TAGTAAAGATCTTCATTCATTTTGTGATTAGGAACCATAAACACATTCTCCGCTTTAGGGTAAAT
578 TAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCC-CATTAGGGTAAAT
* * * *
359419 GGTATTGATGATTTTCTTTTACATGAAAATGTTTTCTTTGCCTTTTTTTTTCCCTAAAATCAAAG
642 GATATTGATGATTTTCTTTTGCATGAAAATGTTTTCTTTGCC--TTATTTTCCTTAAAATCAAAG
* * * * * *
359484 TTCATCCTATTAATACGGTAAGTATTGATTCTTCGAACAGCCTTCATTCTTTTCAAGACTGGGAA
705 TTCATCCCATTAATAAGGCAAGCATTGATTC-TCGAACAGCCTCCATTCTTTTCAAGATTGGGAA
* * *
359549 CCAAAAACACATTCCCTTAAATAAGATACTTGACATTGATGCTTTGGTCTCGCATGAAAAGCTTT
769 CCAAAAACACATTCCCTTCAATAGGATACTTGACATTGATGCTTTGGTCTCGCAAGAAAAGCTTT
* * * *
359614 TCTTTCAATCGTTTTGGTTAGAATCAAAATTTGTCTCTTAAATAAGACAAACAAGAATAGTCATA
834 TCTTTCAACCGTTTTTGTTAGAATCAAAGTTTGTCTCTTAAATAAGACAAATAAGAATAGTCATA
* * * *
359679 CTAATCCCCATTCTTTTCAGGATTAGGCACCACAAACATAGTCTTCTCATC
899 CTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTACTTATA
* * * * * * * * *
359730 AGGATACATGATATTGATGCTCTGGCTTCGCAAG-ATGGTTTTTTTCCCACCAATTTTTATAATG
1 AGGATACACGATATTGACGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAATG
* * * * * * * *
359794 TCTAACTTCGTGCCTGATATAAGACCAACATGGATTCTAGTAATGATCTCCATTC-TTTTATGCT
66 TCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGAT
* * * **
359858 TAGGCAC-ATAAACACA-TCTCCTCCTTAGGATTAATGATATTGACT-ATTTTCTTTTATGTGCA
131 TAGGCACTATAAACACATTCTCC-CATTAGGGTAAATGATATTGA-TGATTTTCTTTTGCGTG-A
* * * * * * * * *
359920 AAATCTTTTCTTTGCCCTACTTTCTTTGAAATCAAAATTCA--CCACTTAAATATGACAAGCATC
193 AAATGTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCCCA-TT-AATAAGGCAAGCATT
* * * * * * * *
359983 GATTCTTGTAACAGTCTCCATTCTTTTCAAGATTTGGAAGCAATAACACATTCCCTTGATTAGGA
256 GATTCTCGGAACAGCCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCAATAGGA
* * * * * *
360048 TACATAACATTTG-TGCTTTGGTGTCGAAAGAAAAGCTTTTCTTTCAACTGCTTTTGTTAGAATC
321 TACTTGACA-TTGATGCTTTGGTCTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGTTAGAATC
* * * *
360112 AAAGTTTATCTCTTTAATAAGACGAACATGAATAGTCATACTAATCCCCATTCTTTTTC-GGATT
385 AAAGTTTGTCTCTTAAATAAGACAAACAAGAATAGTCATACTAATCCCCATTC-TTTTCAGGATT
* * * ** * * * * *
360176 AGGCGCCACAAACATAGTCTTCACATAAGGATAAACGATATTGATGCTTTGGCTTCGCAAGAATG
449 AGGCACCATAAACATAGTCTACTTATAAGGATACACGATATTGACGCTTTGGTTTCACAAGAAAG
* * * *
360241 GCTTTCTTCCCACCAATTTTTGTAACGTCTACGTCCGTGCCTCAAATGAGTCAAACATGGATTCT
514 GCTTTCTTCCCACCAATTTTTGTAATGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCT
* * * * ** ** *
360306 AGCAATGATCTTCATTCATTTTGTGGTTATGCACTACAAACACATTCTTCTAATTA-CTTGAATG
579 AGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC-TCCCATTAGGGTAAATG
* * * * * *
360370 ATATTGATGATTTTATTTTGCAGGGAAATGTTTCCTTTGCCCTATTTTCCTTAAAATCAAAGTTT
643 ATATTGATGATTTTCTTTTGCATGAAAATGTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTC
* * * * * * * *
360435 ATTCCGTAAAAAAGGCAAGCATTGATTCTCGTAACAGTCTCCATTCTTCTCAAGATTGAGATCCA
708 ATCCCATTAATAAGGCAAGCATTGATTCTCG-AACAGCCTCCATTCTTTTCAAGATTGGGAACCA
* * * ** * * *
360500 AAAACATATTCCCTTCATTAGGATACCTGACATTGATGCTTTGGGATCACCAGAAAAGCTATTCT
772 AAAACACATTCCCTTCAATAGGATACTTGACATTGATGCTTTGGTCTCGCAAGAAAAGCTTTTCT
* * * * ** *
360565 TTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTAAAATAAGACAAACATTAATAGTTATACTA
837 TTCAACCGTTTTTGTTAGAATCAAAGTTTGTCTCTTAAATAAGACAAATAAGAATAGTCATACTA
* **
360630 ATCCCTATTCTTTTTTGGATTAGGCACCATAAACATAGTCTACTTATA
902 ATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTACTTATA
* * * *
360678 AAGATACACGATATTGACGCTCTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTATAATG
1 AGGATACACGATATTGACGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAATG
* * * * * * *
360743 TCAAAATTCGTGCCTCAAATGAGACAAAGATGCATTCTCGTAATGATCGTCATTTATTTTGTGAT
66 TCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGAT
* * * * *
360808 TAGGCACTATAAACACGTTCACCCCATTAGGGTAAATGATATTGATGATTTTCTTTCGCATGGAA
131 TAGGCACTATAAACACATTC-TCCCATTAGGGTAAATGATATTGATGATTTTCTTTTGCGTGAAA
* *
360873 ATGTTTCCTTTGCCTTATTTTCCTTAAAATCAAAGATCATCCCATTAATAAGGCAAGCATTGATT
195 ATGTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCCCATTAATAAGGCAAGCATTGATT
* * * * *
360938 CTTGGAATAGCCTCAATTC--TTAAAAATTGGGAA-C-----CACATTCCCTTCAATAGGATACT
260 CTCGGAACAGCCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCAATAGGATACT
* *
360995 TGACATTGATGCTTTGGTCTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTGGTTAGAATTAAAGT
325 TGACATTGATGCTTTGGTCTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGTTAGAATCAAAGT
* * * * *
361060 TTGTCTCTCAACTAGGACAAATAAGAATAGTTATACTAATCCCCATTCTTTTCAGGATTAGGCAC
390 TTGTCTCTTAAATAAGACAAACAAGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCAC
* * * * * *
361125 CATAAACATAGTCTTCTCATAAGAATATACGATATTGATGCTTTGGTTTCACAAGAGAGGCTTTC
455 CATAAACATAGTCTACTTATAAGGATACACGATATTGACGCTTTGGTTTCACAAGAAAGGCTTTC
* * * * *
361190 TTCCCACCAATATTTATAATGTCTAAGTTCGTGCCTCATATGAGACCAACATGGATTCTAGTAAG
520 TTCCCACCAATTTTTGTAATGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAT
* * *
361255 GATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCCTTAGGATTAATGATATTG
585 GATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCC-CATTAGGGTAAATGATATTG
* * * * * * * *
361320 ATGATTTT-TTTTGCGTGAAAATCTTTTTTTTGCCCTATTTTCTTTAAAACCAAAATTCA-CTGC
649 ATGATTTTCTTTTGCATGAAAATGTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATC-CC
* * * * * * *
361383 -TTAAATATGACAAGCATCGATTCTAAC-AACAGTCTCCTTTCCTTTCAAGATTGGGAACCAATA
713 ATT-AATAAGGCAAGCATTGATTCT--CGAACAGCCTCCATTCTTTTCAAGATTGGGAACCAAAA
*** **
361446 ACACATTCCCTTGGCTAGGATACTTGACATTGATGCTTTGGGATCGCAAGAAAAGCTATTT-TTT
775 ACACATTCCCTTCAATAGGATACTTGACATTGATGCTTTGGTCTCGCAAGAAAAGCT-TTTCTTT
* * * **
361510 CCACCCTCTTTCATAGAATCAAAGTTTGTCTCTTAAATAAGACAAA-AATGAATAGTCATACTAA
839 CAACCGTTTTTGTTAGAATCAAAGTTTGTCTCTTAAATAAGACAAATAA-GAATAGTCATACTAA
* * *
361574 TCCCCATTCTTTTCAGGATTAGGTACCATTAACATAGTCTACTAATTA
903 TCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTACTTA-TA
* * * * * * *
361622 A-GATAGATGATATTGATGCTTTGGTTTCACAAGAAAGGCTTTTTTCCCTCTAATTTTTGTAAAG
1 AGGATACACGATATTGACGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAATG
* * * *
361686 TCTAAATTTGTGCCTCAAATAAGACAAACATGGATTCTAGTAATGATCTTCAATCATTTTGTGAT
66 TCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGAT
* * *
361751 TAGGCACTATAAACACATTCTCCCCATCAGGGTAAATGATATTGATGATTTTCTTTTGCATGGAA
131 TAGGCACTATAAACACATTCT-CCCATTAGGGTAAATGATATTGATGATTTTCTTTTGCGTGAAA
* * * **
361816 ATGTTTTCTTTGCCTTATTTTCCTTAAAATAAAAGTTCATCCCAATAATAAGGCAAACACGGATT
195 ATGTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCCCATTAATAAGGCAAGCATTGATT
* *
361881 CTCGGAACAGCCTCCACTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCAATAGGTTACT
260 CTCGGAACAGCCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCAATAGGATACT
* * *
361946 TGACATTGATGCTTTGGTCTCACAAGAAAAGCTTTTCTTTCAACCGTTTTGGTTAGATTCAAAGT
325 TGACATTGATGCTTTGGTCTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGTTAGAATCAAAGT
* * *
362011 TTGTCTCTTAAATAAGATAAATAAGAATAGTCATACTAATCCCTATTCTTTTCAGGATTAGGCAC
390 TTGTCTCTTAAATAAGACAAACAAGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCAC
* * * * * * * *
362076 CACAAACATAGTCTTCTCATAAGGATACACGTTATTAATGCTTTGGTTTCACAAG-ATGGTTTTC
455 CATAAACATAGTCTACTTATAAGGATACACGATATTGACGCTTTGGTTTCACAAGAAAGGCTTTC
* * * * * *
362140 TTCCCACCAATTTTTATAATGTCTAACTTCATGCCTGATATGAGACCAACATGGATTCTAGTAAT
520 TTCCCACCAATTTTTGTAATGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAT
* * * * * *
362205 GATCTTCATTCTTTTTGTGAATAGTCACTATAAACACATTCTCCTCCTTAGGATTAATGATATTG
585 GATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCC-CATTAGGGTAAATGATATTG
* * * * *
362270 ATGA-----TTTT-C---------TTTTCTTTGCCCTATTTTCATTGAAATTAAAATTCA--CCA
649 ATGATTTTCTTTTGCATGAAAATGTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCCCA
* * * * * ** *
362318 CTTAAATATGACAAGCATCGATTCTCGTAACAGTCTCCAATCTTTTCAAGATTGGGAAATAATAA
714 -TT-AATAAGGCAAGCATTGATTCTCG-AACAGCCTCCATTCTTTTCAAGATTGGGAACCAAAAA
* * * * * * *
362383 CACATTCCCTTGATTAGGATACATGACATTGGTGCTTCGGTGTCGAAAGAAAAGCTTTTCTTTCA
776 CACATTCCCTTCAATAGGATACTTGACATTGATGCTTTGGTCTCGCAAGAAAAGCTTTTCTTTCA
* * * * * * * *
362448 ACTGCTTTTGTTAGAATGAAAGTTTATCTCTTTAATAAGACGAACATGAATAGTCATACTAATCC
841 ACCGTTTTTGTTAGAATCAAAGTTTGTCTCTTAAATAAGACAAATAAGAATAGTCATACTAATCC
* * * * **
362513 CCATTCTTTTTAGGATTAGGTACCACAAACATAGTCTTCACATA
906 CCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTACTTATA
* ** * **
362557 AGGATACACGATATTGATGCTTTGGTTTTGCAAGAATGGCTTTCTTCCCACCAATTTTTGTAAAA
1 AGGATACACGATATTGACGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAATG
* * * *
362622 TCTAAGTACGTGCCTCAAATGAGTCAAACATGGATTCTAGCAATGATCTTCATTCATTTTGTGGT
66 TCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGAT
* ** * * ** * * * *
362687 TATGCACTGCAAACATATTCTCCTAATTACTGTGAATGATATTGATGATTTTATTTTGTAG-GGA
131 TAGGCACTATAAACACATTCTCC-CATTAGGGTAAATGATATTGATGATTTTCTTTTG-CGTGAA
* * * * * *
362751 AATGTTTCCTTTGCCTTATTTTCCTTAAAATCAAAGTTTATTCC-TTAAAAAAGGCAAGAAGTGA
194 AATGTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCCCATT-AATAAGGCAAGCATTGA
* * * * * *
362815 TTCTTGTAACAGTCC-CCATTCTTCTT-AGGATTGGGATCCAAAAACATATTCCCTTCATTAGGA
258 TTCTCGGAACAG-CCTCCATTCTT-TTCAAGATTGGGAACCAAAAACACATTCCCTTCAATAGGA
** ** * * * *
362878 TACTT-AGCATTGATGCTTTGGGATCGCAAGAAAAGCAATTCTTTCCACTGTTTTTGATAGAATA
321 TACTTGA-CATTGATGCTTTGGTCTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGTTAGAATC
* * ** * * *
362942 AAAGTTTGTCCCTAAAATAAGACAAACATTAATAGTTATACTAATCCCTATTCTTTTCTGGATTA
385 AAAGTTTGTCTCTTAAATAAGACAAACAAGAATAGTCATACTAATCCCCATTCTTTTCAGGATTA
* * * **
363007 GGCACCATAATCATAGTCTACTTATAAGGATACACGATATTCACACTTTGGTTTCGTAAGAAAGG
450 GGCACCATAAACATAGTCTACTTATAAGGATACACGATATTGACGCTTTGGTTTCACAAGAAAGG
* *
363072 CTTTCTTCCCACCAATTTTTGTAATGTCTAAATTCGTGCCTCAAATAAGACAAACATGGATTCTA
515 CTTTCTTCCCACCAATTTTTGTAATGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTA
* * * *
363137 GTAATAATCTTCATTCATTTTTTGATTAGGCACTGTAAACACATTCACCCCATTAGGGTAAATGA
580 GTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC-TCCCATTAGGGTAAATGA
* * *
363202 TATTGATGATTTTCTTTCGCATCG-AAATGTTTCCTTTGCCTTATTTTCCTTAAAATCAAAGATC
644 TATTGATGATTTTCTTTTGCAT-GAAAATGTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTC
* * * * **
363266 ATCTCATTAATCAA-GCAAGCATTGATTCTTGGAACAACCTCTATTC-TTAAAAGATTGGGAA-C
708 ATCCCATTAAT-AAGGCAAGCATTGATTC-TCGAACAGCCTCCATTCTTTTCAAGATTGGGAACC
363328 -----CACATTCCCTTCAATAGGATACTTGACATTGATGCTTTGGTCTCGCAAGAAAAGCTTTTC
771 AAAAACACATTCCCTTCAATAGGATACTTGACATTGATGCTTTGGTCTCGCAAGAAAAGCTTTTC
* * * * *
363388 TTTCAACCGTTTTGGTTAGAATCAAAGTTTGTCTCTCAACT-AGTATAAATAAGAATAGTAATAC
836 TTTCAACCGTTTTTGTTAGAATCAAAGTTTGTCTCTTAAATAAG-ACAAATAAGAATAGTCATAC
* *
363452 TAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATA
900 TAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTACTTATA
* ** *
363502 AGGATACACGATATTGATGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTACAAGG
1 AGGATACACGATATTGACGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAATG
* * * *
363567 TCTAAGTTCGTGCCTCATATGACACCAACATGGATTCTAGTAATGATCCTCATTCATTTTGTGAT
66 TCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGAT
* * * * *
363632 TAGGCACTATAAACAAATTCTCCTCCTTAGGATTAATGATATTGATGATTTT-TTTTGCATGAAA
131 TAGGCACTATAAACACATTCTCC-CATTAGGGTAAATGATATTGATGATTTTCTTTTGCGTGAAA
* * * * * * * *
363696 ATCTTTTTTTTGCCCTATTTTCTTTAAAATCAAATTTCACTGCTCA--AATAAGACAAGCATCGA
195 ATGTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCA-T-CCCATTAATAAGGCAAGCATTGA
** * * * * ***
363759 TTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAGCCAATAACTCATTCCCTTGGTTAGGATA
258 TTCTCGGAACAGCCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCAATAGGATA
* * * * *
363824 CTTGACATTGATGCTTTGAG-ATCACAAGAAAAGCTATTCTTTCAACCGTTTTGGTTAGATTCAA
323 CTTGACATTGATGCTTTG-GTCTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGTTAGAATCAA
* * *
363888 AGTTTGTCTCTTAAATAAGATAAATAAGAATAGTCAAACTAATCCCCATTCTTTTCAGGATTAGG
387 AGTTTGTCTCTTAAATAAGACAAACAAGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGG
* * *
363953 CACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCACAAGAAAGGCT
452 CACCATAAACATAGTCTACTTATAAGGATACACGATATTGACGCTTTGGTTTCACAAGAAAGGCT
** * * * *
364018 TTCTTCCCACCAATTTTTACAAGGTCTAAGTTCGTGCCTCATATGACACCAACATGGATTCTAGT
517 TTCTTCCCACCAATTTTTGTAATGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGT
* * * * *
364083 AATGATCCTCATTCA-TTTGTGATTAGGCACTATAAACAAATTCTCCTCCTTAGGATTAATGATA
582 AATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCC-CATTAGGGTAAATGATA
* * * * *
364147 TTGATGATTTT-TTTTGCATGAAAATCTTTTTTTTGCCCTATTTTCTTTAAAATCAAAATTCACT
646 TTGATGATTTTCTTTTGCATGAAAATGTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCA-T
* * * * * *
364211 GCTCA--AATAAGACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAGCCAA
710 -CCCATTAATAAGGCAAGCATTGATTCTC-GAACAGCCTCCATTCTTTTCAAGATTGGGAACCAA
* * *** * * *
364274 TAACTCATTCCCTTGGTTAGGATACTTGACATTGATGCTTTGAG-ATCACAAGAAAAGCTATTCT
773 AAACACATTCCCTTCAATAGGATACTTGACATTGATGCTTTG-GTCTCGCAAGAAAAGCTTTTCT
* * * *
364338 TTCAACCGTTTTGGTTAGATTCAAAGTTTGTCTCTTAAATAAGATAAATAAGAATAGTCAAACTA
837 TTCAACCGTTTTTGTTAGAATCAAAGTTTGTCTCTTAAATAAGACAAATAAGAATAGTCATACTA
* * *
364403 ATCCCCATTCTTTTCAGGATTAGGCACCACAAACATAGTCTTCTCATA
902 ATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTACTTATA
* * * * *
364451 AGGATACATGATATTGACACTTTGGTTTCGCAAGAAAGGCTTTCTTCCCGCCAATTTTTGTAACG
1 AGGATACACGATATTGACGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAATG
* * * * * *
364516 TCTTAGTCCATGGCTCAAATGAGTCAAACATGGATTCTAGCAATGATCTTCATTCATTTTGTGAT
66 TCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGAT
* * *** * * * * *
364581 TAGGCACTATAAACACAATCTCTTCATTACTATAAATGATATTGATAACTTTATTTTGCATGGAA
131 TAGGCACTATAAACACATTCTC-CCATTAGGGTAAATGATATTGATGATTTTCTTTTGCGTGAAA
* * * * *
364646 ATGTTTCCTTTGCCTTATTTTTCTTAAAATCAAAGTTCATCCCATAAAAAAGGCAAGCACTGATT
195 ATGTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCCCATTAATAAGGCAAGCATTGATT
* * * * * ** *
364711 GTCGTAATAGTCC-CCATTCTTCTCAAGATTGGGAACTAAAAACTTATTCCCTTCATTAGGATAC
260 CTCGGAACAG-CCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCAATAGGATAC
* * * * * * *
364775 ATGACATTGATGCTTTGAGAC-CGCAAGAAAAGCTATTCTTTCTACCATTTTTGATAGAGTCAAA
324 TTGACATTGATGCTTTG-GTCTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGTTAGAATCAAA
* * * * * *
364839 GTTTGTGTCTTAACTAAGACAAACATGAATAGTAATACCAATCCCTATTCTTTTTCA-GATTAGG
388 GTTTGTCTCTTAAATAAGACAAACAAGAATAGTCATACTAATCCCCATTC-TTTTCAGGATTAGG
** * * ** * *
364903 CACCATAAATGTA-ACATTCTCGTCAGGATACACGATATTGACGCTTTGGTATCACAAGAAAGGC
452 CACCATAAACATAGTC-TACTTATAAGGATACACGATATTGACGCTTTGGTTTCACAAGAAAGGC
* ** * *
364967 TTTCTTCCCACCAATTTTTGCAATGTCTAACATCGTGCCTCAAATTAGACAAACATAGATTCTAG
516 TTTCTTCCCACCAATTTTTGTAATGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAG
365032 TAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCCCATTAGGGTAAATGAT
581 TAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCT-CCCATTAGGGTAAATGAT
* * *
365097 ATTGATGATTTTCTTTTGAATGGAAAA-GTTTTCTTTGCCTTATTTTCCTTAAAATAAAAGCTCA
645 ATTGATGATTTTCTTTTGCAT-GAAAATGTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCA
* * *
365161 T-CCATTAATGAGGCAAACATTGATTCTCGGAATAGCCTCCATTCTTTTCAAGATTGGGAACCAA
709 TCCCATTAATAAGGCAAGCATTGATTCTC-GAACAGCCTCCATTCTTTTCAAGATTGGGAACCAA
* * *
365225 AAACCCATTCCCTTTAATAGGATACTTGACATTGATGCTTTGGTCGCGCAAGAAAAGCTTTTCTT
773 AAACACATTCCCTTCAATAGGATACTTGACATTGATGCTTTGGTCTCGCAAGAAAAGCTTTTCTT
* * * * * * * *
365290 TCAACCATTTTGGTTACAATCAAAGTTTGTCTATTAAATAAAACAAACAAGAATAGTCACACTAT
838 TCAACCGTTTTTGTTAGAATCAAAGTTTGTCTCTTAAATAAGACAAATAAGAATAGTCATACTAA
** *
365355 TCCTTATTCTTTTCAAGATTAGGCACCATAAACATAGTCTACTTATA
903 TCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTACTTATA
* * *
365402 AGGATACATGATATTGACGCTTTGGTTTCACAAAAAAGGCTTTCTTCCCACCAATTTTTGTAAAG
1 AGGATACACGATATTGACGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAATG
* *
365467 TCTAAGTTCGTGCCTCAAAGGAGACAAACATGGATTCTAGTAATGATCGTCATTCATTTTGTGAT
66 TCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGAT
* *
365532 TAGGCACTATAAACACATTCTTCCCATTAGGGTAAATAATAGTGATGATTTTCTTTTGCGTGAAA
131 TAGGCACTATAAACACATTC-TCCCATTAGGGTAAATGATATTGATGATTTTCTTTTGCGTGAAA
365597 ATGTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCCCATTAATAAGGCAAGCATTGATT
195 ATGTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCCCATTAATAAGGCAAGCATTGATT
* *
365662 CTCGGAAGAGCCTCCATTCTTTTCAAGATTGGGAACCAAAAACACAATCCCTTCAATAGGATACT
260 CTCGGAACAGCCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCAATAGGATACT
* *
365727 TGACATTGATACTTTGGTCTTGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGTTAGAATCAAAGT
325 TGACATTGATGCTTTGGTCTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGTTAGAATCAAAGT
* * * * *
365792 TTGCCTCTTAAATAAGACAAATAAGAATAGTCATACTAATCCTCATTCTTTTCACGATTAGGAAC
390 TTGTCTCTTAAATAAGACAAACAAGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCAC
* * * *
365857 CATCAACATAGTCTACTTATAAGGATCCACGATATTGAAGCTTTGGTTCCACAAGAAAGGCTTTC
455 CATAAACATAGTCTACTTATAAGGATACACGATATTGACGCTTTGGTTTCACAAGAAAGGCTTTC
* *
365922 TTCCCACCAATTTTTGCAATGTCTAACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAT
520 TTCCCACCAATTTTTGTAATGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAT
* *
365987 GATCTTTATTCATTTTGTGATTAGGCAATATAAACACATTCTTCCCATTAGGGTAAATGATATTG
585 GATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC-TCCCATTAGGGTAAATGATATTG
* *
366052 ATGATTTTCTTTTGCGTGAAAATGTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGCTCATCCCA
649 ATGATTTTCTTTTGCATGAAAATGTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCCCA
* * *
366117 TTAATAAGGCAAACATTGATTCTCGGAAGAGCCTCCATTCTTTTTAAGATTGGGAACCAAAAACA
714 TTAATAAGGCAAGCATTGATTCTC-GAACAGCCTCCATTCTTTTCAAGATTGGGAACCAAAAACA
* *
366182 CAATCCCTTCAATAGGATACTTGACATTGATACTTTGGTCTCGCAAGAAAAGCTTTTCTTTCAAC
778 CATTCCCTTCAATAGGATACTTGACATTGATGCTTTGGTCTCGCAAGAAAAGCTTTTCTTTCAAC
* *
366247 CGTTTTTGTTAGAATCAAAGTTTG-CGTCTTAAATAAGACAAATAAGAATTGTCATACTAATCCT
843 CGTTTTTGTTAGAATCAAAGTTTGTC-TCTTAAATAAGACAAATAAGAATAGTCATACTAATCCC
* *
366311 CATTCTTTTCACGATTAGGCACCATCAACATAGTCTACTTATA
907 CATTCTTTTCAGGATTAGGCACCATAAACATAGTCTACTTATA
* ** * *
366354 AGGATACACGATATTGGCGCTTTGGTTTTGCAAGAAAGGTTTTCTTCCCACCAATTTTTATAATG
1 AGGATACACGATATTGACGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAATG
* * * * *
366419 TCTAAGTTTGTACCTCATATGAGACCAACATGGATTCTAGTAATGATCGTCATTCATTTTGTGAT
66 TCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGAT
* * *
366484 TAGGCAGTATAAACACATTCTTCCCATTAGGGTAAATAATAGTGATGATTTTCTTTTGCGTGAAA
131 TAGGCACTATAAACACATTC-TCCCATTAGGGTAAATGATATTGATGATTTTCTTTTGCGTGAAA
366549 ATGTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCCCATTAATAAGGCAAGCATTGATT
195 ATGTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCCCATTAATAAGGCAAGCATTGATT
* *
366614 CTCGGAAGAGCCTCCATTCTTTTCAAGATTGGGAACCAAAAACACAATCCCTTCAATAGGATACT
260 CTCGGAACAGCCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCAATAGGATACT
*
366679 TGACATTGATACTTTGGTCTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGTTAGAATCAAAGT
325 TGACATTGATGCTTTGGTCTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGTTAGAATCAAAGT
* * * *
366744 TTGCCTCTTAAATAAGACAAATAAGAATAGTCATACTAATCCTCATTCTTTTCATGATTAGGCAC
390 TTGTCTCTTAAATAAGACAAACAAGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCAC
* *
366809 CAT-AACATAGTCTACTTATAAGGATACACGATATTGACGCTTTGGTTCCACAGGAAAGGCTTTC
455 CATAAACATAGTCTACTTATAAGGATACACGATATTGACGCTTTGGTTTCACAAGAAAGGCTTTC
* * *
366873 TTCCCACTAATTTTTGCAATGTCTAACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAT
520 TTCCCACCAATTTTTGTAATGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAT
* *
366938 GATCTTTATTCATTTTGTGATTAGGCAATATAAACACATTCTTCCCATTAGGGTAAATGATATTG
585 GATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC-TCCCATTAGGGTAAATGATATTG
* *
367003 ATGATTTTCTTTTGCGTGAGAATGTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCCCA
649 ATGATTTTCTTTTGCATGAAAATGTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCCCA
* *
367068 TTAATAAGGCAAGCATTGATTCTCGGAAGAGCCTCCATTCTTTTCAAGATTGGGAACCAAAAGCA
714 TTAATAAGGCAAGCATTGATTCTC-GAACAGCCTCCATTCTTTTCAAGATTGGGAACCAAAAACA
* * * * *
367133 CAATCCCTTCAATAGGATACTTGACATTGATACTTTAGTCTCGCAAGAACAGGTTTTCTTTCAAC
778 CATTCCCTTCAATAGGATACTTGACATTGATGCTTTGGTCTCGCAAGAAAAGCTTTTCTTTCAAC
*
367198 CGTTTTTGTTAGAATCAAAGTTTG-CGTCTTAAATAAGACAAATAAGAATAGTCATACTAATCCT
843 CGTTTTTGTTAGAATCAAAGTTTGTC-TCTTAAATAAGACAAATAAGAATAGTCATACTAATCCC
* *
367262 CATTCTTTTCACGATTAGGCACCATCAACATAGTCTACTTATA
907 CATTCTTTTCAGGATTAGGCACCATAAACATAGTCTACTTATA
* * *
367305 AGGATACACGATATTGACGCTTTGGTTCCACAAGAAAGGCTTTCTTGCCACCAATTTTTGCAATG
1 AGGATACACGATATTGACGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAATG
* * *
367370 TCTAACTTCGTGCCTCAAATGAGACAAACATTGATTCTAGTAATGATCTTTATTCATTTTGTGAT
66 TCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGAT
*
367435 TAGGCAATATAAACACATTCTTCCCATTAGGGTAAATGATATTGATGATTTTCTTTTGCGTGAAA
131 TAGGCACTATAAACACATTC-TCCCATTAGGGTAAATGATATTGATGATTTTCTTTTGCGTGAAA
* *
367500 ATGTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGCTCATCCCATTAATAAGGCAAACATTGATT
195 ATGTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCCCATTAATAAGGCAAGCATTGATT
* * *
367565 CTCGGAAGAGCCTCCATTCTTTTCAGGATTGGGAACCAAAAACACAATCCCTTCAATAGGATACT
260 CTCGGAACAGCCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCAATAGGATACT
*
367630 TGACATTGATACTTTGGTCTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGTTAGAATCAAAGT
325 TGACATTGATGCTTTGGTCTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGTTAGAATCAAAGT
* * *
367695 TTG-CATCTTAAATAAGACAAATAAGAATAGTCATACTAATCCTCATTCTTTTCACGATTAGGCA
390 TTGTC-TCTTAAATAAGACAAACAAGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCA
* * ** *
367759 CCATCAACATAGTCTACTTATAAGGATACACGATATTGGCGCTTTGGTTTTGCAAGAAAGGTTTT
454 CCATAAACATAGTCTACTTATAAGGATACACGATATTGACGCTTTGGTTTCACAAGAAAGGCTTT
* * * * * *
367824 TTTCCCACCAATTTTTATAATGTCTAAGTTTGTACCTCATATGAGACCAACATGGATTCTAGTAA
519 CTTCCCACCAATTTTTGTAATGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAA
* * *
367889 TGATCGTCATTCATTTTGTGATTAGGCAGTATAAACACATTCTTCCCATTAGGGTAAATAATATT
584 TGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC-TCCCATTAGGGTAAATGATATT
*
367954 GATGATTTTCTTTTGCGTGAAAATGTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCAT-CC
648 GATGATTTTCTTTTGCATGAAAATGTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCCC
* *
368018 ATTACTAAGGCAAGCATTGATTCTCGAAAGAGCCTCCATTCTTTTCAAGATTGGGAACCAAAAAC
713 ATTAATAAGGCAAGCATTGATTCTCG-AACAGCCTCCATTCTTTTCAAGATTGGGAACCAAAAAC
* *
368083 ACAATCCCTTCAATAGGATACTTGACATTGATACTTTGGTCTCGCAAGAAAAGCTTTTCTTTCAA
777 ACATTCCCTTCAATAGGATACTTGACATTGATGCTTTGGTCTCGCAAGAAAAGCTTTTCTTTCAA
* *
368148 CCGTTTTTGTTAGAATCAAAGTTTGCCTCTTAAATAAGACAAATAAGAATAGTCATACTAATCCT
842 CCGTTTTTGTTAGAATCAAAGTTTGTCTCTTAAATAAGACAAATAAGAATAGTCATACTAATCCC
*
368213 CATTCTTTTCATGATTAGGCACCAT-AACATAGTCTACTTATA
907 CATTCTTTTCAGGATTAGGCACCATAAACATAGTCTACTTATA
* * *
368255 AGGATACACGATATTGAAGCTTTGGTTCCACAAGAAAGGCTTTCTTCCCACCAATTTTTGCAATG
1 AGGATACACGATATTGACGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAATG
* *
368320 TCTAACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTTATTCATTTTGTGAT
66 TCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGAT
*
368385 TAGGCAATATAAACACATTCTTCCCATTAGGGTAAATGATATTGATGATTTTCTTTTGCGTGAAA
131 TAGGCACTATAAACACATTC-TCCCATTAGGGTAAATGATATTGATGATTTTCTTTTGCGTGAAA
* * *
368450 AAGTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGCTCATCCCATTAATAAGGCAAACATTGATT
195 ATGTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCCCATTAATAAGGCAAGCATTGATT
* *
368515 CTCGGAAGAGCCTCCATTCTTTTCAAGATTGGGAACCAAAAACACAATCCCTTCAATAGGATACT
260 CTCGGAACAGCCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCAATAGGATACT
* *
368580 TGACATTGATACTTTGGTCTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGTTAGAATAAAAGT
325 TGACATTGATGCTTTGGTCTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGTTAGAATCAAAGT
* * *
368645 TTG-CGTCTTAAATAAGACAAATAAGAATAGTCATACTAATCCTCATTCTTTTCACGATTAGGCA
390 TTGTC-TCTTAAATAAGACAAACAAGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCA
* * ** *
368709 CCATCAACATAGTCTACTTATAAGGATACACGATATTGGCGCTTTGGTTTTGCAAGAAAGGTTTT
454 CCATAAACATAGTCTACTTATAAGGATACACGATATTGACGCTTTGGTTTCACAAGAAAGGCTTT
* * * * *
368774 CTTCCCACCAATTTTTATAATGTCTAAGTTTGTACCTCATATGAGACCAACATGGATTCTAGTAA
519 CTTCCCACCAATTTTTGTAATGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAA
* * * *
368839 TGATCGTCATTCATTTTGTGATTAGGCAGTATAAACACATTCTTCCCATTAGGGTAAATAATAGT
584 TGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC-TCCCATTAGGGTAAATGATATT
*
368904 GATGATTTTCTTTTGCGTGAAAATGTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCCC
648 GATGATTTTCTTTTGCATGAAAATGTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCCC
*
368969 ATTAATAAGGCAAGCATTGATTCTCGGAAGAGCCTCCATTCTTTTCAAGATTGGGAACCAAAAAC
713 ATTAATAAGGCAAGCATTGATTCTC-GAACAGCCTCCATTCTTTTCAAGATTGGGAACCAAAAAC
* *
369034 ACAATCCCTTCAATAGGATACTTGACATTGATACTTTGGTCTCGCAAGAAAAGCTTTTCTTTCAA
777 ACATTCCCTTCAATAGGATACTTGACATTGATGCTTTGGTCTCGCAAGAAAAGCTTTTCTTTCAA
* *
369099 CCGTTTTTGTTAGAATCAAAGTTTGCCTCTTAAATAAGACAAATAAGAATAGTCATACTAATCCT
842 CCGTTTTTGTTAGAATCAAAGTTTGTCTCTTAAATAAGACAAATAAGAATAGTCATACTAATCCC
*
369164 CATTCTTTTCATGATTAGGCACCAT-AACATAGTCTACTTATA
907 CATTCTTTTCAGGATTAGGCACCATAAACATAGTCTACTTATA
* * *
369206 AGGATACACGATATTGACGCTTTGGTTCCACAAGAAAGGCTTTCTTCCCACTAATTTTTGCAATG
1 AGGATACACGATATTGACGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAATG
* *
369271 TCTAACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTTATTCATTTTGTGAT
66 TCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGAT
* *
369336 TAGGCAATATAAACACATTCTTCCCATTAGGGTAAATGATATTGATGATTTTCTTTTGCGTGAGA
131 TAGGCACTATAAACACATTC-TCCCATTAGGGTAAATGATATTGATGATTTTCTTTTGCGTGAAA
369401 ATGTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCCCATTAATAAGGCAAGCATTGATT
195 ATGTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCCCATTAATAAGGCAAGCATTGATT
* * *
369466 CTCGGAAGAGCCTCCATTCTTTTCAAGATTGGGAACCAAAAGCACAATCCCTTCAATAGGATACT
260 CTCGGAACAGCCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCAATAGGATACT
* * * * *
369531 TGACATTGATACTTTAGTCTCGCAAGAACAGGTTTTGTTTCAACCGTTTTTGTTAGAATCAAAGT
325 TGACATTGATGCTTTGGTCTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGTTAGAATCAAAGT
* * * *
369596 TTG-CGTCTTAAATAAGACAAATAAAAATAGTCATACTAATCCTCATTCTTTTCACGATTAGGCA
390 TTGTC-TCTTAAATAAGACAAACAAGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCA
* *
369660 CCATCAACATAGTCTACTTATAAGGATACACGATATTGACGCTTTGGTTCCACAAGAAAGGCTTT
454 CCATAAACATAGTCTACTTATAAGGATACACGATATTGACGCTTTGGTTTCACAAGAAAGGCTTT
* * * *
369725 CTTGCCACCAATTTTTGCAATGTCTAACTTCGTGCCTCAAATGAGACAAACATTGATTCTAGTAA
519 CTTCCCACCAATTTTTGTAATGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAA
* *
369790 TGATCTTTATTCATTTTGTGATTAGGCAATATAAACACATTCTCCCCATTAGGGTAAATGATATT
584 TGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCT-CCCATTAGGGTAAATGATATT
*
369855 GATGATTTTCTTTTGCATGGAAATGTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCAT-CC
648 GATGATTTTCTTTTGCATGAAAATGTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCCC
* *
369919 ATTAATAAGGCAAGCATTGATTCTTGGAACAACCTCCATTCTTTTCAAGATTGGGAACCAAAAAG
713 ATTAATAAGGCAAGCATTGATTC-TCGAACAGCCTCCATTCTTTTCAAGATTGGGAACCAAAAA-
* * *
369984 C-CCTTCCCTTCAATAGGATACTTGACATTGATGCTTTGATCGCGCAAGAAAAGCTTTTCTTTCA
776 CACATTCCCTTCAATAGGATACTTGACATTGATGCTTTGGTCTCGCAAGAAAAGCTTTTCTTTCA
* * * * * *
370048 ACCGTTTTGGTTAGAATCAAAGTTTGTCTATTAAATAAGACAAACAACAATAGTCACACTATTCC
841 ACCGTTTTTGTTAGAATCAAAGTTTGTCTCTTAAATAAGACAAATAAGAATAGTCATACTAATCC
** * * *
370113 ATATTCTTTTCAAGATTAGGCACCATAAACGTAGTCTACTTAAA
906 CCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTACTTATA
* * * *
370157 AGGATACACGATATTGATGCTTTGGTTTCACAAAAAAGGCTTTATTCCCACCAATTTTTGTAAAG
1 AGGATACACGATATTGACGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAATG
* * *
370222 TCTAAGTTCGTGCCTCAAAGGAGACAAACATGGATTCTTGTAATGATCATCATTCATTTTGTGAT
66 TCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGAT
* * *
370287 TAGGCACTATAAACACATTCTTCCCATTAGGGTAAATAATAGTGATGATTTTCTTTTACGTGAAA
131 TAGGCACTATAAACACATTC-TCCCATTAGGGTAAATGATATTGATGATTTTCTTTTGCGTGAAA
370352 ATGTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCCCATTAATAAGGCAAGCATTGA-T
195 ATGTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCCCATTAATAAGGCAAGCATTGATT
* *
370416 -TCGGAAGAGCCTCCATTCTTTTCAAGATTGGGAACCAAAAACACAATCCCTTCAATAGGATACT
260 CTCGGAACAGCCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCAATAGGATACT
* * *
370480 TGACATTGATACTTTGGTCACGCAAGAAAAGCTTTTCTTTCAACCGTTTTGGTTAGAATCAAAGT
325 TGACATTGATGCTTTGGTCTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGTTAGAATCAAAGT
* * * ** *
370545 TTGTCTCTTAAATAAGAGAAACAAGAATAGTCACACTATTCCATATTCTTTTCAAGATTAGGCAC
390 TTGTCTCTTAAATAAGACAAACAAGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCAC
** *
370610 CATAAATGTAGTCTACTTATAAGGATACACGATATTGACGCTTTGGTTTCACAAAAAAGGCTTTC
455 CATAAACATAGTCTACTTATAAGGATACACGATATTGACGCTTTGGTTTCACAAGAAAGGCTTTC
* *
370675 TTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAAGGAGACAAACATGGATTCTAGTAAT
520 TTCCCACCAATTTTTGTAATGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAT
* * * *
370740 GATCATCATTCATTTTGTGATTAGGCAGTATAAACACATTCTTCCCATTAGGGTAAATAATAGTG
585 GATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC-TCCCATTAGGGTAAATGATATTG
* * *
370805 ATGATTTTCTTTTGTATGAAACTGTTTTCTTTACCTTATTTTCCTTAAAATCAAAGTTCATCCCA
649 ATGATTTTCTTTTGCATGAAAATGTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCCCA
* * *
370870 TTAATAAGGCAAGCATTGATTC-GGAAAAGCCTCCTTTCTTTTCAAGATTGGGAACCAAAAACAC
714 TTAATAAGGCAAGCATTGATTCTCGAACAGCCTCCATTCTTTTCAAGATTGGGAACCAAAAACAC
* *
370934 AATCCCTTCAATAGGATACTTGACATTGATACTTTGGTCTCGCAAGAAAAGCTTTTCTTTCAACC
779 ATTCCCTTCAATAGGATACTTGACATTGATGCTTTGGTCTCGCAAGAAAAGCTTTTCTTTCAACC
* **
370999 GTTTTTGTTAGAATCAAAGTTTG-CGTCTTAAATAAGACAAATAAGAATAGTCGTACTAATCCTT
844 GTTTTTGTTAGAATCAAAGTTTGTC-TCTTAAATAAGACAAATAAGAATAGTCATACTAATCCCC
* *
371063 ATTCTTTTCACGATTAGGCACCATCAACATAGTCTACTTATA
908 ATTCTTTTCAGGATTAGGCACCATAAACATAGTCTACTTATA
* ** * *
371105 AGGATACACGATATTGGCGCTTTGGTTTTGCAAGAAAGGTTTTCTTCCCACCAATTTTTATAATG
1 AGGATACACGATATTGACGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAATG
* * * *
371170 TCTAAGTTCGTACCTCATATGAGACCAACATGGATTCTAGTAATGATCGTCATTCATTTTGTGAT
66 TCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGAT
* * * * *
371235 TAGGTAGTATAAACACATTCTTCCCATTAGGGTAAAT-AGTAGTGATGATATTCTTTGGCGTGAA
131 TAGGCACTATAAACACATTC-TCCCATTAGGGTAAATGA-TATTGATGATTTTCTTTTGCGTGAA
371299 AATGTTTTCTTTGCCTTATTTTCCTT-AAATCAAAGTTCATCCCATTAATAAGGCAAGCATTGAT
194 AATGTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCCCATTAATAAGGCAAGCATTGAT
* *
371363 TCTTGGAACAGCCTCCATTCTTTTCAAGATTGGGAACCAAAAAGC-CCTTCCCTTCAATAGGATA
259 TCTCGGAACAGCCTCCATTCTTTTCAAGATTGGGAACCAAAAA-CACATTCCCTTCAATAGGATA
* * *
371427 CTTGACATTGATGCTTTGGTCGCGCAAGAAAAGC-TTTCTTTCAACCGTTTTGGTTAGAATTAAA
323 CTTGACATTGATGCTTTGGTCTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGTTAGAATCAAA
* * * ** *
371491 GTTTGTCTCTTAAATAAGACAAAAAAGAATAGTCACACTATTCCATATTCTTTTCAAGATTAGGC
388 GTTTGTCTCTTAAATAAGACAAACAAGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGC
* *
371556 ACCATAAACGTAGTCTACTTATAAGGATACACGATATTGACGCTTTGGTTTCACAAAAAAGGCTT
453 ACCATAAACATAGTCTACTTATAAGGATACACGATATTGACGCTTTGGTTTCACAAGAAAGGCTT
* *
371621 TCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAAGGAGACAAACATGGATTCTAGTA
518 TCTTCCCACCAATTTTTGTAATGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTA
* * * *
371686 ATGATCATCATTCATTTTGCGATTAGGCACTATAAACACATTCTTCCCATTAGGGTAAATAATAG
583 ATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC-TCCCATTAGGGTAAATGATAT
* *
371751 TGATGATTTTCTTTTGCGTGAAAATGTTTTCTTTGTCTTATTTTCCTTAAAATCAAAGTTCATCC
647 TGATGATTTTCTTTTGCATGAAAATGTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCC
*
371816 CATTAATAAGGCAAGCATTGATTCTCGGAATAGCCTCCATTCTTTTCAAGATTGGGAACCAAAAA
712 CATTAATAAGGCAAGCATTGATTCTC-GAACAGCCTCCATTCTTTTCAAGATTGGGAACCAAAAA
* * *
371881 CACAATCCCTTCAATAGGATACTTGACATTGATACTTTGGTCGCGCAAGAAAAGCTTTTCTTTCA
776 CACATTCCCTTCAATAGGATACTTGACATTGATGCTTTGGTCTCGCAAGAAAAGCTTTTCTTTCA
* * * *
371946 ACCGTTTTGGTTAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATAGTCACACTATTCC
841 ACCGTTTTTGTTAGAATCAAAGTTTGTCTCTTAAATAAGACAAATAAGAATAGTCATACTAATCC
** * *
372011 ATATTCTTTTCAAGATTAGGCACCATAAACGTAGTCTACTTATA
906 CCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTACTTATA
* *
372055 AGGATACACGATATTGACGCTTTGGTTTCACAAAAAAGGCTTTCTTCCCACCAATTTTTGTAAAG
1 AGGATACACGATATTGACGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAATG
* *
372120 TCTAAGTTCGTGCCTCAAAGGAGACAAACATGGATTCTAGTAATGATCATCATTCATTTTGTGAT
66 TCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGAT
* *
372185 TAGGCACTATAAACACATTCTTCCCATTAGGGTAAATAATAGTGATGATTTTCTTTTGCGTGAAA
131 TAGGCACTATAAACACATTC-TCCCATTAGGGTAAATGATATTGATGATTTTCTTTTGCGTGAAA
372250 ATGTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCCCATTAATAAGGCAAGCATTGATT
195 ATGTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCCCATTAATAAGGCAAGCATTGATT
* *
372315 CTTGGAACAGCCTCCATTCTTTTCAAGATTGGGAACCAAAAAGC-CCTTCCCTTCAATAGGATAC
260 CTCGGAACAGCCTCCATTCTTTTCAAGATTGGGAACCAAAAA-CACATTCCCTTCAATAGGATAC
* * *
372379 TTGACATTGATGCTTTGGTCGCACAAGAAAAGCTTTTCTTTCAACCGTTTTGGTTAGAATCAAAG
324 TTGACATTGATGCTTTGGTCTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGTTAGAATCAAAG
* * ** *
372444 TTTGTCTCTTAAATAAGACAAACAAGAATAGTCACACTATTCCATATTCTTTTCAAGATTAGGCA
389 TTTGTCTCTTAAATAAGACAAACAAGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCA
* *
372509 CCATAAACGTAGTCTACTTATAAGGATACACGATATTGACGCTTTGGTTTCACAAAAAAGGCTTT
454 CCATAAACATAGTCTACTTATAAGGATACACGATATTGACGCTTTGGTTTCACAAGAAAGGCTTT
* * *
372574 CTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGTCTCAAAAGAGACAAACATGGATTCTAGTAA
519 CTTCCCACCAATTTTTGTAATGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAA
* * *
372639 TGATCATCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCCCATTAGGGTAAATAATAGT
584 TGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC-TCCCATTAGGGTAAATGATATT
*
372704 GATGATTTTCTTTTGCGTGAAAATGTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCCC
648 GATGATTTTCTTTTGCATGAAAATGTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCCC
*
372769 ATTAATAAGGCAAGCATTGATTCTCGGAAGAGCCTCCATTCTTTTCAAGATTGGGAACCAAAAAC
713 ATTAATAAGGCAAGCATTGATTCTC-GAACAGCCTCCATTCTTTTCAAGATTGGGAACCAAAAAC
* *
372834 ACAATCCCTTCAATAGGATACTTGACATTGATACTTTGGTCTCGCAAGAAAAGCTTTTCTTTCAA
777 ACATTCCCTTCAATAGGATACTTGACATTGATGCTTTGGTCTCGCAAGAAAAGCTTTTCTTTCAA
* *
372899 CCGTTTTTGTTAGAATCAAAGTTTGCCTCTTAAATAAGACAAATAAGAATAGTCATACTAATCCT
842 CCGTTTTTGTTAGAATCAAAGTTTGTCTCTTAAATAAGACAAATAAGAATAGTCATACTAATCCC
*
372964 CATTCTTTTCACGATTAGGCACCATAAACATAGTCTACTTATA
907 CATTCTTTTCAGGATTAGGCACCATAAACATAGTCTACTTATA
* * * *
373007 AGGATACACGATATTGACGCTCTGGTTCCACAAGAAAGGCTTTCTTCCCCCCAATTTTTGCAATG
1 AGGATACACGATATTGACGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAATG
* * *
373072 TCTAACTTCGTGGCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTTATTCATTTTGTGAT
66 TCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGAT
* * * *
373137 TAGGCAATATAAACGCATTCTCCCCATTAGGGTAAATGATATTGATGATTTTCTTTTGCATGGAA
131 TAGGCACTATAAACACATTCT-CCCATTAGGGTAAATGATATTGATGATTTTCTTTTGCGTGAAA
* *
373202 ATGTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCAT-CTATTAATAAGGCAAACATTGATT
195 ATGTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCCCATTAATAAGGCAAGCATTGATT
* * *
373266 CTTGGAACAGCCTCCATTCTTTTCAAGATTAGGAACCAAAAACCCATTCCCTTCAATAGGATACT
260 CTCGGAACAGCCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCAATAGGATACT
* *
373331 TGACATTGATGCTTTGGTCGCGCAAGAAAAGCTTTTCTTTCAACCGTTTTGGTTAGAATCAAAGT
325 TGACATTGATGCTTTGGTCTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGTTAGAATCAAAGT
* * * *
373396 TTGTCTCTTAAATAAGACAAACAAGAATAGTTATACTATTCCCTATTCTTTTCAAGATT
390 TTGTCTCTTAAATAAGACAAACAAGAATAGTCATACTAATCCCCATTCTTTTCAGGATT
373455 GGGAACCAAA
Statistics
Matches: 13165, Mismatches: 1347, Indels: 338
0.89 0.09 0.02
Matches are distributed among these distances:
934 2 0.00
935 10 0.00
936 645 0.05
937 126 0.01
938 2 0.00
941 4 0.00
942 84 0.01
943 821 0.06
944 367 0.03
945 321 0.02
946 6 0.00
947 43 0.00
948 1008 0.08
949 894 0.07
950 1895 0.14
951 3987 0.30
952 2149 0.16
953 202 0.02
954 116 0.01
955 240 0.02
956 239 0.02
957 4 0.00
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.35
Consensus pattern (949 bp):
AGGATACACGATATTGACGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAATG
TCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGAT
TAGGCACTATAAACACATTCTCCCATTAGGGTAAATGATATTGATGATTTTCTTTTGCGTGAAAA
TGTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCCCATTAATAAGGCAAGCATTGATTC
TCGGAACAGCCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCAATAGGATACTT
GACATTGATGCTTTGGTCTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGTTAGAATCAAAGTT
TGTCTCTTAAATAAGACAAACAAGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACC
ATAAACATAGTCTACTTATAAGGATACACGATATTGACGCTTTGGTTTCACAAGAAAGGCTTTCT
TCCCACCAATTTTTGTAATGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATG
ATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCCATTAGGGTAAATGATATTGAT
GATTTTCTTTTGCATGAAAATGTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCCCATT
AATAAGGCAAGCATTGATTCTCGAACAGCCTCCATTCTTTTCAAGATTGGGAACCAAAAACACAT
TCCCTTCAATAGGATACTTGACATTGATGCTTTGGTCTCGCAAGAAAAGCTTTTCTTTCAACCGT
TTTTGTTAGAATCAAAGTTTGTCTCTTAAATAAGACAAATAAGAATAGTCATACTAATCCCCATT
CTTTTCAGGATTAGGCACCATAAACATAGTCTACTTATA
Done.