Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold299
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 460272
ACGTcount: A:0.31, C:0.19, G:0.16, T:0.34
File 3 of 3
Found at i:363646 original size:158 final size:157
Alignment explanation
Indices: 363454--364152 Score: 382
Period size: 158 Copynumber: 4.4 Consensus size: 157
363444 AGTAATACTA
* *
363454 ATCCCCATTCTTTTCAG-GATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTG
1 ATCCTCATTCTTTTC-GTGATTAGGCACCATAAACATAGTCTCCTCATAAGGATACACGATATTG
* *
363518 ATGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTACAAGGTCTAAGTTCGTGCCTC
65 ATGCTTTGGTTTCACAAGAAAAGCTTTCTTCCCACCAATTTTTACAAGGTCAAAGTTCGTGCCTC
* *
363583 ATATGACACCAACATGGATTCTAGTAATG
130 AAATAACA-CAACATGGATTCTAGTAATG
* * * * * *
363612 ATCCTCATTCATTTT-GTGATTAGGCACTATAAACAAATTCTCCTCCTTAGGATTA-ATGATATT
1 ATCCTCATTC-TTTTCGTGATTAGGCACCATAAACATAGTCTCCTCATAAGGA-TACACGATATT
* * ** * * * ** * ** ** * *
363675 GATGATTT-TTTTTGCATGAAAATCTTTTTTTTGC-CCTATTTTCTTTAAAATCAAATTTCACTG
64 GATGCTTTGGTTTCACAAGAAAAGC-TTTCTTCCCACCAATTTT-TACAAGGTCAAAGTTC-GTG
* * *
363738 -CTCAAATAAGACAAGCATCGATTCTCA-TAA-C
126 CCTCAAATAACACAA-CATGGATTCT-AGTAATG
** * * ** * **
363769 AGT-CTCCATTCTTTTCAAGATT-GGGAGCCA-ATAAC-TCATTC-CCTTGGTTAGGATACTTGA
1 A-TCCT-CATTCTTTTCGTGATTAGGCA-CCATA-AACAT-AGTCTCC-TCATAAGGATACACGA
* * * * ** * *
363829 CATTGATGCTTTGAG-ATCACAAGAAAAGCTATTCTTTCAACCGTTTTGGTTA-GA-TTCAAAGT
60 TATTGATGCTTTG-GTTTCACAAGAAAAGCT-TTCTTCCCACCAATTT--TTACAAGGTCAAAGT
* * * * * * *
363891 TTGT-CTCTTAAATAAGATAA-ATAAGA--ATAGTCAAACTA
121 TCGTGC-CTCAAATAACACAACAT-GGATTCTAGT--AA-TG
* *
363929 ATCCCCATTCTTTTCAG-GATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTG
1 ATCCTCATTCTTTTC-GTGATTAGGCACCATAAACATAGTCTCCTCATAAGGATACACGATATTG
* *
363993 ATGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTACAAGGTCTAAGTTCGTGCCTC
65 ATGCTTTGGTTTCACAAGAAAAGCTTTCTTCCCACCAATTTTTACAAGGTCAAAGTTCGTGCCTC
* *
364058 ATATGACACCAACATGGATTCTAGTAATG
130 AAATAACA-CAACATGGATTCTAGTAATG
* * * * * * *
364087 ATCCTCATTCATTT-GTGATTAGGCACTATAAACAAATTCTCCTCCTTAGGATTA-ATGATATTG
1 ATCCTCATTCTTTTCGTGATTAGGCACCATAAACATAGTCTCCTCATAAGGA-TACACGATATTG
364150 ATG
65 ATG
364153 ATTTTTTTTG
Statistics
Matches: 394, Mismatches: 101, Indels: 93
0.67 0.17 0.16
Matches are distributed among these distances:
155 1 0.00
156 6 0.02
157 79 0.20
158 177 0.45
159 109 0.28
160 16 0.04
161 5 0.01
162 1 0.00
ACGTcount: A:0.30, C:0.20, G:0.14, T:0.35
Consensus pattern (157 bp):
ATCCTCATTCTTTTCGTGATTAGGCACCATAAACATAGTCTCCTCATAAGGATACACGATATTGA
TGCTTTGGTTTCACAAGAAAAGCTTTCTTCCCACCAATTTTTACAAGGTCAAAGTTCGTGCCTCA
AATAACACAACATGGATTCTAGTAATG
Found at i:372078 original size:159 final size:158
Alignment explanation
Indices: 363343--376531 Score: 2170
Period size: 159 Copynumber: 83.3 Consensus size: 158
363333 TCCCTTCAAT
* * * *
363343 AGGATACTTGACATTGATGCTTTGGTCTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTGGTTAGA
1 AGGATACATGATATTGATGCTTTGGTCTCGCAAGAAAAGCTTTTCTTTCAACCATTTTTGTTAGA
* * * * * * * *
363408 ATCAAAGTTTGTCTCTCAACT-AGTATAAATA-AGAATAGTAATACTAATCCCCATTCTTTTCAG
66 ATCAAAGTTCGTCTCTTAAATAAG-ACAAACATAGAATAGTCA-ACT-ATCCTCATTCTTTTCAA
* * *
363471 GATTAGGCACCATAAACATAGTCTTCTCATA
128 GATTAGGCACCATAAACACAGTCTCCTTATA
* * * * * * * *
363502 AGGATACACGATATTGATGCTTTGGTTTCACAAGAAAGGC-TTTCTTCCCACCA-ATTT-TTACA
1 AGGATACATGATATTGATGCTTTGGTCTCGCAAGAAAAGCTTTTCTTTCAACCATTTTTGTTAGA
* * * * * * * *
363564 AGGTCTAAGTTCGTGC-CTCATATGACACCAACATGGATTCTAGT-AA-TGATCCTCATTCATTT
66 A--TCAAAGTTCGT-CTCTTAAATAAGACAAACATAGA--ATAGTCAACT-ATCCTCATTC-TTT
** * * * ** *
363626 T-GTGATTAGGCACTATAAACAAATTCTCCTCCTT
124 TCAAGATTAGGCACCATAAACACAGTCTCCTTATA
* * * * * * *
363660 AGGATTA-ATGATATTGATGATTT-TTTTTGCATGAAAATCTTTTTTTTGC--CCTATTTTCT-T
1 AGGA-TACATGATATTGATGCTTTGGTCTCGCAAGAAAAGCTTTTCTTT-CAACC-ATTTT-TGT
* * * * * * **
363720 TAAAATCAAATTTC-ACTGCTCAAATAAGACAAGCATCG-ATTCTCATAAC-AGT-CTCCATTCT
62 TAGAATCAAAGTTCGTCT-CTTAAATAAGACAAACATAGAATAGTC--AACTA-TCCT-CATTCT
* * * * *
363781 TTTCAAGATT-GGGAGCCA-ATAACTCATTC-CCTTGGTT
122 TTTCAAGATTAGGCA-CCATA-AACACAGTCTCCTT-ATA
* * * * * * *
363818 AGGATACTTGACATTGATGCTTTGAG-ATCACAAGAAAAGCTATTCTTTCAACCGTTTTGGTTAG
1 AGGATACATGATATTGATGCTTTG-GTCTCGCAAGAAAAGCTTTTCTTTCAACCATTTTTGTTAG
* * * * * *
363882 ATTCAAAGTTTGTCTCTTAAATAAGATAAATA-AGAATAGTCAAACTAATCCCCATTCTTTTCAG
65 AATCAAAGTTCGTCTCTTAAATAAGACAAACATAGAATAGTC-AACT-ATCCTCATTCTTTTCAA
* * *
363946 GATTAGGCACCATAAACATAGTCTTCTCATA
128 GATTAGGCACCATAAACACAGTCTCCTTATA
* * * * * * * *
363977 AGGATACACGATATTGATGCTTTGGTTTCACAAGAAAGGC-TTTCTTCCCACCA-ATTT-TTACA
1 AGGATACATGATATTGATGCTTTGGTCTCGCAAGAAAAGCTTTTCTTTCAACCATTTTTGTTAGA
* * * * * * * * *
364039 AGGTCTAAGTTCGTGC-CTCATATGACACCAACATGGATTCTAGT-AA-TGATCCTCATTCATTT
66 A--TCAAAGTTCGT-CTCTTAAATAAGACAAACATAGA--ATAGTCAACT-ATCCTCATTCTTTT
** * * * ** *
364101 -GTGATTAGGCACTATAAACAAATTCTCCTCCTT
125 CAAGATTAGGCACCATAAACACAGTCTCCTTATA
* * * * * * *
364134 AGGATTA-ATGATATTGATGATTT-TTTTTGCATGAAAATCTTTTTTTTGC--CCTATTTTCT-T
1 AGGA-TACATGATATTGATGCTTTGGTCTCGCAAGAAAAGCTTTTCTTT-CAACC-ATTTT-TGT
* * * * * * **
364194 TAAAATCAAAATTC-ACTGCTCAAATAAGACAAGCATCG-ATTCTCATAAC-AGT-CTCCATTCT
62 TAGAATCAAAGTTCGTCT-CTTAAATAAGACAAACATAGAATAGTC--AACTA-TCCT-CATTCT
* * * * *
364255 TTTCAAGATT-GGGAGCCA-ATAACTCATTC-CCTTGGTT
122 TTTCAAGATTAGGCA-CCATA-AACACAGTCTCCTT-ATA
* * * * * * *
364292 AGGATACTTGACATTGATGCTTTGAG-ATCACAAGAAAAGCTATTCTTTCAACCGTTTTGGTTAG
1 AGGATACATGATATTGATGCTTTG-GTCTCGCAAGAAAAGCTTTTCTTTCAACCATTTTTGTTAG
* * * * * *
364356 ATTCAAAGTTTGTCTCTTAAATAAGATAAATA-AGAATAGTCAAACTAATCCCCATTCTTTTCAG
65 AATCAAAGTTCGTCTCTTAAATAAGACAAACATAGAATAGTC-AACT-ATCCTCATTCTTTTCAA
* * * *
364420 GATTAGGCACCACAAACATAGTCTTCTCATA
128 GATTAGGCACCATAAACACAGTCTCCTTATA
** * * * **
364451 AGGATACATGATATTGACACTTTGGTTTCGCAAGAAAGGC-TTTCTTCCCGCCAATTTTTG-TA-
1 AGGATACATGATATTGATGCTTTGGTCTCGCAAGAAAAGCTTTTCTTTCAACC-ATTTTTGTTAG
* ** * * ** * * * * * *
364513 ACGTCTTAGTCCATGGCTCAAATGAGTCAAACATGGATTCTAG-CAA-TGATCTTCATTCATTTT
65 A-ATCAAAGTTCGTCTCTTAAATAAGACAAACATAGA--ATAGTCAACT-ATCCTCATTC-TTTT
** * * *
364576 -GTGATTAGGCACTATAAACACAATCT-CTTCATT
125 CAAGATTAGGCACCATAAACACAGTCTCCTT-ATA
** * * * * * * * * * *
364609 ACTATAAATGATATTGATAACTTT-ATTTTGCATGGAAATG-TTTCCTTTGC--CTTATTTTTCT
1 AGGATACATGATATTGAT-GCTTTGGTCTCGCA-AGAAAAGCTTTTCTTT-CAAC-CATTTTTGT
* * * * * * * * *
364670 TAAAATCAAAGTTCATCCCATAAAAAAGGCAAGCACT-G-ATTGTCGTAA-TAGTCCCCATTCTT
62 TAGAATCAAAGTTCGTCTCTTAAATAAGACAAACA-TAGAATAGTC--AACTA-TCCTCATTCTT
* * * * * ** * *
364732 CTCAAGATTGGGAACTAAAAACTTATTC-CCTTCATT
123 TTCAAGATTAGGCACCATAAACACAGTCTCCTT-ATA
* * * * *
364768 AGGATACATGACATTGATGCTTTGAGAC-CGCAAGAAAAGCTATTCTTTCTACCATTTTTGATAG
1 AGGATACATGATATTGATGCTTTG-GTCTCGCAAGAAAAGCTTTTCTTTCAACCATTTTTGTTAG
* * * * * *
364832 AGTCAAAGTTTGTGTCTTAACTAAGACAAACAT-GAATAGTAATACCAATCC-CTATTCTTTTTC
65 AATCAAAGTTCGTCTCTTAAATAAGACAAACATAGAATAGTCA-A-CTATCCTC-ATTC-TTTTC
* ** *
364895 -AGATTAGGCACCATAAATGTAACA-T-T-CTCGTC
126 AAGATTAGGCACCATAAA---CACAGTCTCCTTATA
* * * * * * * *
364927 AGGATACACGATATTGACGCTTTGGTATCACAAGAAAGGC-TTTCTTCCCACCAATTTTTG-CA-
1 AGGATACATGATATTGATGCTTTGGTCTCGCAAGAAAAGCTTTTCTTTCAACC-ATTTTTGTTAG
* * ** * * * *
364989 ATGTCTAACATCGTGC-CTCAAATTAGACAAACATAGATTCTAGT-AA-TGATCTTCATTCATTT
65 A-ATCAAAGTTCGT-CTCTTAAATAAGACAAACATAGA--ATAGTCAACT-ATCCTCATTC-TTT
** * * ** *
365051 T-GTGATTAGGCACTATAAACACATTCTCCCCATT
124 TCAAGATTAGGCACCATAAACACAGTCTCCTTATA
* * * ** * * * **
365085 AGGGTAAATGATATTGATGATTTTCTTTTG-AATGGAAAAG-TTTTCTTTGC--CTTATTTTCCT
1 AGGATACATGATATTGATGCTTTGGTCTCGCAA--GAAAAGCTTTTCTTT-CAAC-CATTTTTGT
* * * * * * * ** *
365146 TAAAATAAAAGCTCATC-CATT-AATGAGGCAAACATTG-ATTCTCGGAA-TAGCCTCCATTCTT
62 TAGAATCAAAGTTCGTCTC-TTAAATAAGACAAACATAGAATAGTC--AACTATCCT-CATTCTT
* * * * *
365207 TTCAAGATTGGGAACCAAAAACCCATTC-CCTT-TAA
123 TTCAAGATTAGGCACCATAAACACAGTCTCCTTAT-A
* * * * *
365242 TAGGATACTTGACATTGATGCTTTGGTCGCGCAAGAAAAGCTTTTCTTTCAACCATTTTGGTTAC
1 -AGGATACATGATATTGATGCTTTGGTCTCGCAAGAAAAGCTTTTCTTTCAACCATTTTTGTTAG
* * * *
365307 AATCAAAGTTTGTCTATTAAATAAAACAAACA-AGAATAGTCACACTATTCCTTATTCTTTTCAA
65 AATCAAAGTTCGTCTCTTAAATAAGACAAACATAGAATAGTCA-ACTA-TCCTCATTCTTTTCAA
* *
365371 GATTAGGCACCATAAACATAGTCTACTTATA
128 GATTAGGCACCATAAACACAGTCTCCTTATA
* * * * *
365402 AGGATACATGATATTGACGCTTTGGTTTCACAA-AAAAGGC-TTTCTTCCCACCAATTTTTG-TA
1 AGGATACATGATATTGATGCTTTGGTCTCGCAAGAAAA-GCTTTTCTTTCAACC-ATTTTTGTTA
* * ** * * *
365464 -AAGTCTAAGTTCGTGC-CTCAAAGGAGACAAACATGGATTCTAGT-AA-TGATCGTCATTCATT
64 GAA-TCAAAGTTCGT-CTCTTAAATAAGACAAACATAGA--ATAGTCAACT-ATCCTCATTC-TT
** * * * *
365525 TT-GTGATTAGGCACTATAAACACATTCTTCC-CATT
123 TTCAAGATTAGGCACCATAAACACAGTC-TCCTTATA
* * * * * ** * * ** * **
365560 AGGGTAAATAATAGTGATGATTTTCTTTTGCGTGAAAATG-TTTTCTTTGC--CTTATTTTCCTT
1 AGGATACATGATATTGATGCTTTGGTCTCGCAAGAAAA-GCTTTTCTTT-CAAC-CATTTTTGTT
* * * * * * ** * *
365622 AAAATCAAAGTTCATCCCATT-AATAAGGCAAGCATTG-ATTCTCGGAA-GAGCCTCCATTCTTT
63 AGAATCAAAGTTCGTCTC-TTAAATAAGACAAACATAGAATAGTC--AACTATCCT-CATTCTTT
* * * *
365684 TCAAGATTGGGAACCAAAAACACAATC-CCTTCA-A
124 TCAAGATTAGGCACCATAAACACAGTCTCCTT-ATA
* * * * *
365718 TAGGATACTTGACATTGATACTTTGGTCTTGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGTTAG
1 -AGGATACATGATATTGATGCTTTGGTCTCGCAAGAAAAGCTTTTCTTTCAACCATTTTTGTTAG
* * * *
365783 AATCAAAGTTTGCCTCTTAAATAAGACAAATA-AGAATAGTCATACTAATCCTCATTCTTTTCAC
65 AATCAAAGTTCGTCTCTTAAATAAGACAAACATAGAATAGTCA-ACT-ATCCTCATTCTTTTCAA
* * * *
365847 GATTAGGAACCATCAACATAGTCTACTTATA
128 GATTAGGCACCATAAACACAGTCTCCTTATA
* * * * * * * *
365878 AGGATCCACGATATTGAAGCTTTGGT-TCCACAAGAAAGGC-TTTCTTCCCACCAATTTTTG-CA
1 AGGATACATGATATTGATGCTTTGGTCT-CGCAAGAAAAGCTTTTCTTTCAACC-ATTTTTGTTA
* * * * * * * * *
365940 -ATGTCTAACTTCGTGC-CTCAAATGAGACAAACATGGATTCTAGT-AA-TGATCTTTATTCATT
64 GA-ATCAAAGTTCGT-CTCTTAAATAAGACAAACATAGA--ATAGTCAACT-ATCCTCATTC-TT
** ** * * *
366001 TT-GTGATTAGGCAATATAAACACATTCTTCC-CATT
123 TTCAAGATTAGGCACCATAAACACAGTC-TCCTTATA
* * * ** * * ** * **
366036 AGGGTAAATGATATTGATGATTTTCTTTTGCGTGAAAATG-TTTTCTTTGC--CTTATTTTCCTT
1 AGGATACATGATATTGATGCTTTGGTCTCGCAAGAAAA-GCTTTTCTTT-CAAC-CATTTTTGTT
* * * * * * ** * *
366098 AAAATCAAAGCTCATCCCATT-AATAAGGCAAACATTG-ATTCTCGGAA-GAGCCTCCATTCTTT
63 AGAATCAAAGTTCGTCTC-TTAAATAAGACAAACATAGAATAGTC--AACTATCCT-CATTCTTT
* * * * *
366160 TTAAGATTGGGAACCAAAAACACAATC-CCTTCA-A
124 TCAAGATTAGGCACCATAAACACAGTCTCCTT-ATA
* * * *
366194 TAGGATACTTGACATTGATACTTTGGTCTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGTTAG
1 -AGGATACATGATATTGATGCTTTGGTCTCGCAAGAAAAGCTTTTCTTTCAACCATTTTTGTTAG
* * *
366259 AATCAAAGTTTG-CGTCTTAAATAAGACAAATA-AGAATTGTCATACTAATCCTCATTCTTTTCA
65 AATCAAAGTTCGTC-TCTTAAATAAGACAAACATAGAATAGTCA-ACT-ATCCTCATTCTTTTCA
* * * *
366322 CGATTAGGCACCATCAACATAGTCTACTTATA
127 AGATTAGGCACCATAAACACAGTCTCCTTATA
* ** * * * * * *
366354 AGGATACACGATATTGGCGCTTTGGTTTTGCAAG-AAAGGTTTTCTTCCCACCAATTTTT-ATA-
1 AGGATACATGATATTGATGCTTTGGTCTCGCAAGAAAAGCTTTTCTTTCAACC-ATTTTTGTTAG
* * * * * * * * * *
366416 ATGTCTAAGTTTGTAC-CTCATATGAGACCAACATGGATTCTAGT-AA-TGATCGTCATTCATTT
65 A-ATCAAAGTTCGT-CTCTTAAATAAGACAAACATAGA--ATAGTCAACT-ATCCTCATTC-TTT
** ** * * *
366478 T-GTGATTAGGCAGTATAAACACATTCTTCC-CATT
124 TCAAGATTAGGCACCATAAACACAGTC-TCCTTATA
* * * * * ** * * ** * **
366512 AGGGTAAATAATAGTGATGATTTTCTTTTGCGTGAAAATG-TTTTCTTTGC--CTTATTTTCCTT
1 AGGATACATGATATTGATGCTTTGGTCTCGCAAGAAAA-GCTTTTCTTT-CAAC-CATTTTTGTT
* * * * * * ** * *
366574 AAAATCAAAGTTCATCCCATT-AATAAGGCAAGCATTG-ATTCTCGGAA-GAGCCTCCATTCTTT
63 AGAATCAAAGTTCGTCTC-TTAAATAAGACAAACATAGAATAGTC--AACTATCCT-CATTCTTT
* * * *
366636 TCAAGATTGGGAACCAAAAACACAATC-CCTTCA-A
124 TCAAGATTAGGCACCATAAACACAGTCTCCTT-ATA
* * * *
366670 TAGGATACTTGACATTGATACTTTGGTCTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGTTAG
1 -AGGATACATGATATTGATGCTTTGGTCTCGCAAGAAAAGCTTTTCTTTCAACCATTTTTGTTAG
* * * *
366735 AATCAAAGTTTGCCTCTTAAATAAGACAAATA-AGAATAGTCATACTAATCCTCATTCTTTTCAT
65 AATCAAAGTTCGTCTCTTAAATAAGACAAACATAGAATAGTCA-ACT-ATCCTCATTCTTTTCAA
* *
366799 GATTAGGCACCAT-AACATAGTCTACTTATA
128 GATTAGGCACCATAAACACAGTCTCCTTATA
* * * * * * *
366829 AGGATACACGATATTGACGCTTTGGT-TC-CACAGGAAAGGC-TTTCTTCCCACTAATTTTTG-C
1 AGGATACATGATATTGATGCTTTGGTCTCGCA-A-GAAAAGCTTTTCTTTCAAC-CATTTTTGTT
* * * * * * * * *
366890 A-ATGTCTAACTTCGTGC-CTCAAATGAGACAAACATGGATTCTAGT-AA-TGATCTTTATTCAT
63 AGA-ATCAAAGTTCGT-CTCTTAAATAAGACAAACATAGA--ATAGTCAACT-ATCCTCATTC-T
** ** * * *
366951 TTT-GTGATTAGGCAATATAAACACATTCTTCC-CATT
122 TTTCAAGATTAGGCACCATAAACACAGTC-TCCTTATA
* * * ** * * ** * * **
366987 AGGGTAAATGATATTGATGATTTTCTTTTGCGTGAGAATG-TTTTCTTTGC--CTTATTTTCCTT
1 AGGATACATGATATTGATGCTTTGGTCTCGCAAGA-AAAGCTTTTCTTT-CAAC-CATTTTTGTT
* * * * * * ** * *
367049 AAAATCAAAGTTCATCCCATT-AATAAGGCAAGCATTG-ATTCTCGGAA-GAGCCTCCATTCTTT
63 AGAATCAAAGTTCGTCTC-TTAAATAAGACAAACATAGAATAGTC--AACTATCCT-CATTCTTT
* * *
367111 TCAAGATTGGGAACCA-AAAGCACAATC-CCTTCA-A
124 TCAAGATTAGGCACCATAAA-CACAGTCTCCTT-ATA
* * * * * * *
367145 TAGGATACTTGACATTGATACTTTAGTCTCGCAAGAACAGGTTTTCTTTCAACCGTTTTTGTTAG
1 -AGGATACATGATATTGATGCTTTGGTCTCGCAAGAAAAGCTTTTCTTTCAACCATTTTTGTTAG
* *
367210 AATCAAAGTTTG-CGTCTTAAATAAGACAAATA-AGAATAGTCATACTAATCCTCATTCTTTTCA
65 AATCAAAGTTCGTC-TCTTAAATAAGACAAACATAGAATAGTCA-ACT-ATCCTCATTCTTTTCA
* * * *
367273 CGATTAGGCACCATCAACATAGTCTACTTATA
127 AGATTAGGCACCATAAACACAGTCTCCTTATA
* * * * * * *
367305 AGGATACACGATATTGACGCTTTGGT-TCCACAAGAAAGGC-TTTCTTGCCACCAATTTTTG-CA
1 AGGATACATGATATTGATGCTTTGGTCT-CGCAAGAAAAGCTTTTCTTTCAACC-ATTTTTGTTA
* * * * * * * * *
367367 -ATGTCTAACTTCGTGC-CTCAAATGAGACAAACATTGATTCTAGT-AA-TGATCTTTATTCATT
64 GA-ATCAAAGTTCGT-CTCTTAAATAAGACAAACATAGA--ATAGTCAACT-ATCCTCATTC-TT
** ** * * *
367428 TT-GTGATTAGGCAATATAAACACATTCTTCC-CATT
123 TTCAAGATTAGGCACCATAAACACAGTC-TCCTTATA
* * * ** * * ** * **
367463 AGGGTAAATGATATTGATGATTTTCTTTTGCGTGAAAATG-TTTTCTTTGC--CTTATTTTCCTT
1 AGGATACATGATATTGATGCTTTGGTCTCGCAAGAAAA-GCTTTTCTTT-CAAC-CATTTTTGTT
* * * * * * ** * *
367525 AAAATCAAAGCTCATCCCATT-AATAAGGCAAACATTG-ATTCTCGGAA-GAGCCTCCATTCTTT
63 AGAATCAAAGTTCGTCTC-TTAAATAAGACAAACATAGAATAGTC--AACTATCCT-CATTCTTT
* * * * *
367587 TCAGGATTGGGAACCAAAAACACAATC-CCTTCA-A
124 TCAAGATTAGGCACCATAAACACAGTCTCCTT-ATA
* * * *
367621 TAGGATACTTGACATTGATACTTTGGTCTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGTTAG
1 -AGGATACATGATATTGATGCTTTGGTCTCGCAAGAAAAGCTTTTCTTTCAACCATTTTTGTTAG
* *
367686 AATCAAAGTTTG-CATCTTAAATAAGACAAATA-AGAATAGTCATACTAATCCTCATTCTTTTCA
65 AATCAAAGTTCGTC-TCTTAAATAAGACAAACATAGAATAGTCA-ACT-ATCCTCATTCTTTTCA
* * * *
367749 CGATTAGGCACCATCAACATAGTCTACTTATA
127 AGATTAGGCACCATAAACACAGTCTCCTTATA
* ** * * * * *
367781 AGGATACACGATATTGGCGCTTTGGTTTTGCAAG-AAAGGTTTT-TTTCCCACCAATTTTT-ATA
1 AGGATACATGATATTGATGCTTTGGTCTCGCAAGAAAAGCTTTTCTTT-CAACC-ATTTTTGTTA
* * * * * * * * * *
367843 -ATGTCTAAGTTTGTAC-CTCATATGAGACCAACATGGATTCTAGT-AA-TGATCGTCATTCATT
64 GA-ATCAAAGTTCGT-CTCTTAAATAAGACAAACATAGA--ATAGTCAACT-ATCCTCATTC-TT
** ** * * *
367904 TT-GTGATTAGGCAGTATAAACACATTCTTCC-CATT
123 TTCAAGATTAGGCACCATAAACACAGTC-TCCTTATA
* * * * ** * * ** * **
367939 AGGGTAAATAATATTGATGATTTTCTTTTGCGTGAAAATG-TTTTCTTTGC--CTTATTTTCCTT
1 AGGATACATGATATTGATGCTTTGGTCTCGCAAGAAAA-GCTTTTCTTT-CAAC-CATTTTTGTT
* * * * * * ** ** *
368001 AAAATCAAAGTTCATC-CATT-ACTAAGGCAAGCATTG-ATTCTCGAAAGAGCCTCCATTCTTTT
63 AGAATCAAAGTTCGTCTC-TTAAATAAGACAAACATAGAATAGTC-AACTATCCT-CATTCTTTT
* * * *
368063 CAAGATTGGGAACCAAAAACACAATC-CCTTCA-A
125 CAAGATTAGGCACCATAAACACAGTCTCCTT-ATA
* * * *
368096 TAGGATACTTGACATTGATACTTTGGTCTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGTTAG
1 -AGGATACATGATATTGATGCTTTGGTCTCGCAAGAAAAGCTTTTCTTTCAACCATTTTTGTTAG
* * * *
368161 AATCAAAGTTTGCCTCTTAAATAAGACAAATA-AGAATAGTCATACTAATCCTCATTCTTTTCAT
65 AATCAAAGTTCGTCTCTTAAATAAGACAAACATAGAATAGTCA-ACT-ATCCTCATTCTTTTCAA
* *
368225 GATTAGGCACCAT-AACATAGTCTACTTATA
128 GATTAGGCACCATAAACACAGTCTCCTTATA
* * * * * * *
368255 AGGATACACGATATTGAAGCTTTGGT-TCCACAAGAAAGGC-TTTCTTCCCACCAATTTTTG-CA
1 AGGATACATGATATTGATGCTTTGGTCT-CGCAAGAAAAGCTTTTCTTTCAACC-ATTTTTGTTA
* * * * * * * * *
368317 -ATGTCTAACTTCGTGC-CTCAAATGAGACAAACATGGATTCTAGT-AA-TGATCTTTATTCATT
64 GA-ATCAAAGTTCGT-CTCTTAAATAAGACAAACATAGA--ATAGTCAACT-ATCCTCATTC-TT
** ** * * *
368378 TT-GTGATTAGGCAATATAAACACATTCTTCC-CATT
123 TTCAAGATTAGGCACCATAAACACAGTC-TCCTTATA
* * * ** * * ** * **
368413 AGGGTAAATGATATTGATGATTTTCTTTTGCGTGAAAAAG-TTTTCTTTGC--CTTATTTTCCTT
1 AGGATACATGATATTGATGCTTTGGTCTCGCAAG-AAAAGCTTTTCTTT-CAAC-CATTTTTGTT
* * * * * * ** * *
368475 AAAATCAAAGCTCATCCCATT-AATAAGGCAAACATTG-ATTCTCGGAA-GAGCCTCCATTCTTT
63 AGAATCAAAGTTCGTCTC-TTAAATAAGACAAACATAGAATAGTC--AACTATCCT-CATTCTTT
* * * *
368537 TCAAGATTGGGAACCAAAAACACAATC-CCTTCA-A
124 TCAAGATTAGGCACCATAAACACAGTCTCCTT-ATA
* * * *
368571 TAGGATACTTGACATTGATACTTTGGTCTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGTTAG
1 -AGGATACATGATATTGATGCTTTGGTCTCGCAAGAAAAGCTTTTCTTTCAACCATTTTTGTTAG
* * *
368636 AATAAAAGTTTG-CGTCTTAAATAAGACAAATA-AGAATAGTCATACTAATCCTCATTCTTTTCA
65 AATCAAAGTTCGTC-TCTTAAATAAGACAAACATAGAATAGTCA-ACT-ATCCTCATTCTTTTCA
* * * *
368699 CGATTAGGCACCATCAACATAGTCTACTTATA
127 AGATTAGGCACCATAAACACAGTCTCCTTATA
* ** * * * * * *
368731 AGGATACACGATATTGGCGCTTTGGTTTTGCAAG-AAAGGTTTTCTTCCCACCAATTTTT-ATA-
1 AGGATACATGATATTGATGCTTTGGTCTCGCAAGAAAAGCTTTTCTTTCAACC-ATTTTTGTTAG
* * * * * * * * * *
368793 ATGTCTAAGTTTGTAC-CTCATATGAGACCAACATGGATTCTAGT-AA-TGATCGTCATTCATTT
65 A-ATCAAAGTTCGT-CTCTTAAATAAGACAAACATAGA--ATAGTCAACT-ATCCTCATTC-TTT
** ** * * *
368855 T-GTGATTAGGCAGTATAAACACATTCTTCC-CATT
124 TCAAGATTAGGCACCATAAACACAGTC-TCCTTATA
* * * * * ** * * ** * **
368889 AGGGTAAATAATAGTGATGATTTTCTTTTGCGTGAAAATG-TTTTCTTTGC--CTTATTTTCCTT
1 AGGATACATGATATTGATGCTTTGGTCTCGCAAGAAAA-GCTTTTCTTT-CAAC-CATTTTTGTT
* * * * * * ** * *
368951 AAAATCAAAGTTCATCCCATT-AATAAGGCAAGCATTG-ATTCTCGGAA-GAGCCTCCATTCTTT
63 AGAATCAAAGTTCGTCTC-TTAAATAAGACAAACATAGAATAGTC--AACTATCCT-CATTCTTT
* * * *
369013 TCAAGATTGGGAACCAAAAACACAATC-CCTTCA-A
124 TCAAGATTAGGCACCATAAACACAGTCTCCTT-ATA
* * * *
369047 TAGGATACTTGACATTGATACTTTGGTCTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGTTAG
1 -AGGATACATGATATTGATGCTTTGGTCTCGCAAGAAAAGCTTTTCTTTCAACCATTTTTGTTAG
* * * *
369112 AATCAAAGTTTGCCTCTTAAATAAGACAAATA-AGAATAGTCATACTAATCCTCATTCTTTTCAT
65 AATCAAAGTTCGTCTCTTAAATAAGACAAACATAGAATAGTCA-ACT-ATCCTCATTCTTTTCAA
* *
369176 GATTAGGCACCAT-AACATAGTCTACTTATA
128 GATTAGGCACCATAAACACAGTCTCCTTATA
* * * * * * * *
369206 AGGATACACGATATTGACGCTTTGGT-TCCACAAGAAAGGC-TTTCTTCCCACTAATTTTTG-CA
1 AGGATACATGATATTGATGCTTTGGTCT-CGCAAGAAAAGCTTTTCTTTCAAC-CATTTTTGTTA
* * * * * * * * *
369268 -ATGTCTAACTTCGTGC-CTCAAATGAGACAAACATGGATTCTAGT-AA-TGATCTTTATTCATT
64 GA-ATCAAAGTTCGT-CTCTTAAATAAGACAAACATAGA--ATAGTCAACT-ATCCTCATTC-TT
** ** * * *
369329 TT-GTGATTAGGCAATATAAACACATTCTTCC-CATT
123 TTCAAGATTAGGCACCATAAACACAGTC-TCCTTATA
* * * ** * * ** * * **
369364 AGGGTAAATGATATTGATGATTTTCTTTTGCGTGAGAATG-TTTTCTTTGC--CTTATTTTCCTT
1 AGGATACATGATATTGATGCTTTGGTCTCGCAAGA-AAAGCTTTTCTTT-CAAC-CATTTTTGTT
* * * * * * ** * *
369426 AAAATCAAAGTTCATCCCATT-AATAAGGCAAGCATTG-ATTCTCGGAA-GAGCCTCCATTCTTT
63 AGAATCAAAGTTCGTCTC-TTAAATAAGACAAACATAGAATAGTC--AACTATCCT-CATTCTTT
* * *
369488 TCAAGATTGGGAACCA-AAAGCACAATC-CCTTCA-A
124 TCAAGATTAGGCACCATAAA-CACAGTCTCCTT-ATA
* * * * * * * *
369522 TAGGATACTTGACATTGATACTTTAGTCTCGCAAGAACAGGTTTTGTTTCAACCGTTTTTGTTAG
1 -AGGATACATGATATTGATGCTTTGGTCTCGCAAGAAAAGCTTTTCTTTCAACCATTTTTGTTAG
* * *
369587 AATCAAAGTTTG-CGTCTTAAATAAGACAAATA-AAAATAGTCATACTAATCCTCATTCTTTTCA
65 AATCAAAGTTCGTC-TCTTAAATAAGACAAACATAGAATAGTCA-ACT-ATCCTCATTCTTTTCA
* * * *
369650 CGATTAGGCACCATCAACATAGTCTACTTATA
127 AGATTAGGCACCATAAACACAGTCTCCTTATA
* * * * * * *
369682 AGGATACACGATATTGACGCTTTGGT-TCCACAAGAAAGGC-TTTCTTGCCACCAATTTTTG-CA
1 AGGATACATGATATTGATGCTTTGGTCT-CGCAAGAAAAGCTTTTCTTTCAACC-ATTTTTGTTA
* * * * * * * * *
369744 -ATGTCTAACTTCGTGC-CTCAAATGAGACAAACATTGATTCTAGT-AA-TGATCTTTATTCATT
64 GA-ATCAAAGTTCGT-CTCTTAAATAAGACAAACATAGA--ATAGTCAACT-ATCCTCATTC-TT
** ** * ** *
369805 TT-GTGATTAGGCAATATAAACACATTCTCCCCATT
123 TTCAAGATTAGGCACCATAAACACAGTCTCCTTATA
* * * ** * * * * * **
369840 AGGGTAAATGATATTGATGATTTTCTTTTGCATGGAAATG-TTTTCTTTGC--CTTATTTTCCTT
1 AGGATACATGATATTGATGCTTTGGTCTCGCA-AGAAAAGCTTTTCTTT-CAAC-CATTTTTGTT
* * * * * * ** * *
369902 AAAATCAAAGTTCATC-CATT-AATAAGGCAAGCATTGATTCTTGGAAC-AACCTCCATTCTTTT
63 AGAATCAAAGTTCGTCTC-TTAAATAAGACAAACATAGAATAGT-CAACTATCCT-CATTCTTTT
* * * **
369964 CAAGATTGGGAACCAAAAAGC-CCTTC-CCTTCA-A
125 CAAGATTAGGCACCATAAA-CACAGTCTCCTT-ATA
* * * * * *
369997 TAGGATACTTGACATTGATGCTTTGATCGCGCAAGAAAAGCTTTTCTTTCAACCGTTTTGGTTAG
1 -AGGATACATGATATTGATGCTTTGGTCTCGCAAGAAAAGCTTTTCTTTCAACCATTTTTGTTAG
* * *
370062 AATCAAAGTTTGTCTATTAAATAAGACAAACA-ACAATAGTCACACTATTCCAT-ATTCTTTTCA
65 AATCAAAGTTCGTCTCTTAAATAAGACAAACATAGAATAGTCA-ACTA-TCC-TCATTCTTTTCA
** * *
370125 AGATTAGGCACCATAAACGTAGTCTACTTAAA
127 AGATTAGGCACCATAAACACAGTCTCCTTATA
* * * * * *
370157 AGGATACACGATATTGATGCTTTGGTTTCACAA-AAAAGGC-TTTATTCCCACCAATTTTTG-TA
1 AGGATACATGATATTGATGCTTTGGTCTCGCAAGAAAA-GCTTTTCTTTCAACC-ATTTTTGTTA
* * ** * * * *
370219 -AAGTCTAAGTTCGTGC-CTCAAAGGAGACAAACATGGATTCTTGT-AA-TGATCATCATTCATT
64 GAA-TCAAAGTTCGT-CTCTTAAATAAGACAAACATAGA--ATAGTCAACT-ATCCTCATTC-TT
** * * * *
370280 TT-GTGATTAGGCACTATAAACACATTCTTCC-CATT
123 TTCAAGATTAGGCACCATAAACACAGTC-TCCTTATA
* * * * * ** * ** ** * **
370315 AGGGTAAATAATAGTGATGATTTTCTTTTACGTGAAAATG-TTTTCTTTGC--CTTATTTTCCTT
1 AGGATACATGATATTGATGCTTTGGTCTCGCAAGAAAA-GCTTTTCTTT-CAAC-CATTTTTGTT
* * * * * * * * * * *
370377 AAAATCAAAGTTCATCCCATT-AATAAGGCAAGCATTGATTCG-GAA-GAGCCTCCATTCTTTTC
63 AGAATCAAAGTTCGTCTC-TTAAATAAGACAAACATAGAATAGTCAACTATCCT-CATTCTTTTC
* * * *
370439 AAGATTGGGAACCAAAAACACAATC-CCTTCA-A
126 AAGATTAGGCACCATAAACACAGTCTCCTT-ATA
* * * * * *
370471 TAGGATACTTGACATTGATACTTTGGTCACGCAAGAAAAGCTTTTCTTTCAACCGTTTTGGTTAG
1 -AGGATACATGATATTGATGCTTTGGTCTCGCAAGAAAAGCTTTTCTTTCAACCATTTTTGTTAG
* *
370536 AATCAAAGTTTGTCTCTTAAATAAGAGAAACA-AGAATAGTCACACTATTCCAT-ATTCTTTTCA
65 AATCAAAGTTCGTCTCTTAAATAAGACAAACATAGAATAGTCA-ACTA-TCC-TCATTCTTTTCA
*** *
370599 AGATTAGGCACCATAAATGTAGTCTACTTATA
127 AGATTAGGCACCATAAACACAGTCTCCTTATA
* * * * * *
370631 AGGATACACGATATTGACGCTTTGGTTTCACAA-AAAAGGC-TTTCTTCCCACCAATTTTTG-TA
1 AGGATACATGATATTGATGCTTTGGTCTCGCAAGAAAA-GCTTTTCTTTCAACC-ATTTTTGTTA
* * ** * * *
370693 -AAGTCTAAGTTCGTGC-CTCAAAGGAGACAAACATGGATTCTAGT-AA-TGATCATCATTCATT
64 GAA-TCAAAGTTCGT-CTCTTAAATAAGACAAACATAGA--ATAGTCAACT-ATCCTCATTC-TT
** ** * * *
370754 TT-GTGATTAGGCAGTATAAACACATTCTTCC-CATT
123 TTCAAGATTAGGCACCATAAACACAGTC-TCCTTATA
* * * * * ** * * * * * **
370789 AGGGTAAATAATAGTGATGATTTTCTTTTGTATGAAACTG-TTTTCTTT--ACCTTATTTTCCTT
1 AGGATACATGATATTGATGCTTTGGTCTCGCAAGAAA-AGCTTTTCTTTCAACC--ATTTTTGTT
* * * * * * * * * * * *
370851 AAAATCAAAGTTCATCCCATT-AATAAGGCAAGCATTGATTCG-GAA-AAGCCTCCTTTCTTTTC
63 AGAATCAAAGTTCGTCTC-TTAAATAAGACAAACATAGAATAGTCAACTATCCT-CATTCTTTTC
* * * *
370913 AAGATTGGGAACCAAAAACACAATC-CCTTCA-A
126 AAGATTAGGCACCATAAACACAGTCTCCTT-ATA
* * * *
370945 TAGGATACTTGACATTGATACTTTGGTCTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGTTAG
1 -AGGATACATGATATTGATGCTTTGGTCTCGCAAGAAAAGCTTTTCTTTCAACCATTTTTGTTAG
* * * *
371010 AATCAAAGTTTG-CGTCTTAAATAAGACAAATA-AGAATAGTCGTACTAATCCTTATTCTTTTCA
65 AATCAAAGTTCGTC-TCTTAAATAAGACAAACATAGAATAGTC-AACT-ATCCTCATTCTTTTCA
* * * *
371073 CGATTAGGCACCATCAACATAGTCTACTTATA
127 AGATTAGGCACCATAAACACAGTCTCCTTATA
* ** * * * * * *
371105 AGGATACACGATATTGGCGCTTTGGTTTTGCAAG-AAAGGTTTTCTTCCCACCAATTTTT-ATA-
1 AGGATACATGATATTGATGCTTTGGTCTCGCAAGAAAAGCTTTTCTTTCAACC-ATTTTTGTTAG
* * * * * * * * *
371167 ATGTCTAAGTTCGTAC-CTCATATGAGACCAACATGGATTCTAGT-AA-TGATCGTCATTCATTT
65 A-ATCAAAGTTCGT-CTCTTAAATAAGACAAACATAGA--ATAGTCAACT-ATCCTCATTC-TTT
** * ** * * *
371229 T-GTGATTAGGTAGTATAAACACATTCTTCC-CATT
124 TCAAGATTAGGCACCATAAACACAGTC-TCCTTATA
* * * * * * * ** * **
371263 AGGGTAAAT-AGTAGTGATGATATT-CTTTGGCGTGAAAATG-TTTTCTTTGC--CTTATTTTCC
1 AGGATACATGA-TATTGATGCT-TTGGTCTCGCAAGAAAA-GCTTTTCTTT-CAAC-CATTTTTG
* * * * * * ** * *
371323 TTA-AATCAAAGTTCATCCCATT-AATAAGGCAAGCATTGATTCTTGGAAC-AGCCTCCATTCTT
61 TTAGAATCAAAGTTCGTCTC-TTAAATAAGACAAACATAGAATAGT-CAACTATCCT-CATTCTT
* * * **
371385 TTCAAGATTGGGAACCAAAAAGC-CCTTC-CCTTCA-A
123 TTCAAGATTAGGCACCATAAA-CACAGTCTCCTT-ATA
* * * * *
371420 TAGGATACTTGACATTGATGCTTTGGTCGCGCAAGAAAAGC-TTTCTTTCAACCGTTTTGGTTAG
1 -AGGATACATGATATTGATGCTTTGGTCTCGCAAGAAAAGCTTTTCTTTCAACCATTTTTGTTAG
* * *
371484 AATTAAAGTTTGTCTCTTAAATAAGACAAA-AAAGAATAGTCACACTATTCCAT-ATTCTTTTCA
65 AATCAAAGTTCGTCTCTTAAATAAGACAAACATAGAATAGTCA-ACTA-TCC-TCATTCTTTTCA
** *
371547 AGATTAGGCACCATAAACGTAGTCTACTTATA
127 AGATTAGGCACCATAAACACAGTCTCCTTATA
* * * * * *
371579 AGGATACACGATATTGACGCTTTGGTTTCACAA-AAAAGGC-TTTCTTCCCACCAATTTTTG-TA
1 AGGATACATGATATTGATGCTTTGGTCTCGCAAGAAAA-GCTTTTCTTTCAACC-ATTTTTGTTA
* * ** * * *
371641 -AAGTCTAAGTTCGTGC-CTCAAAGGAGACAAACATGGATTCTAGT-AA-TGATCATCATTCATT
64 GAA-TCAAAGTTCGT-CTCTTAAATAAGACAAACATAGA--ATAGTCAACT-ATCCTCATTC-TT
* * * *
371702 TTGC--GATTAGGCACTATAAACACATTCTTCC-CATT
123 TT-CAAGATTAGGCACCATAAACACAGTC-TCCTTATA
* * * * * ** * * ** ** * **
371737 AGGGTAAATAATAGTGATGATTTTCTTTTGCGTGAAAATG-TTTTCTTT-GTCTTATTTTCCTTA
1 AGGATACATGATATTGATGCTTTGGTCTCGCAAGAAAA-GCTTTTCTTTCAAC-CATTTTTGTTA
* * * * * * ** *
371800 AAATCAAAGTTCATCCCATT-AATAAGGCAAGCATTG-ATTCTCGGAA-TAGCCTCCATTCTTTT
64 GAATCAAAGTTCGTCTC-TTAAATAAGACAAACATAGAATAGTC--AACTATCCT-CATTCTTTT
* * * *
371862 CAAGATTGGGAACCAAAAACACAATC-CCTTCA-A
125 CAAGATTAGGCACCATAAACACAGTCTCCTT-ATA
* * * * * *
371895 TAGGATACTTGACATTGATACTTTGGTCGCGCAAGAAAAGCTTTTCTTTCAACCGTTTTGGTTAG
1 -AGGATACATGATATTGATGCTTTGGTCTCGCAAGAAAAGCTTTTCTTTCAACCATTTTTGTTAG
*
371960 AATCAAAGTTTGTCTCTTAAATAAGACAAACA-AGAATAGTCACACTATTCCAT-ATTCTTTTCA
65 AATCAAAGTTCGTCTCTTAAATAAGACAAACATAGAATAGTCA-ACTA-TCC-TCATTCTTTTCA
** *
372023 AGATTAGGCACCATAAACGTAGTCTACTTATA
127 AGATTAGGCACCATAAACACAGTCTCCTTATA
* * * * * *
372055 AGGATACACGATATTGACGCTTTGGTTTCACAA-AAAAGGC-TTTCTTCCCACCAATTTTTG-TA
1 AGGATACATGATATTGATGCTTTGGTCTCGCAAGAAAA-GCTTTTCTTTCAACC-ATTTTTGTTA
* * ** * * *
372117 -AAGTCTAAGTTCGTGC-CTCAAAGGAGACAAACATGGATTCTAGT-AA-TGATCATCATTCATT
64 GAA-TCAAAGTTCGT-CTCTTAAATAAGACAAACATAGA--ATAGTCAACT-ATCCTCATTC-TT
** * * * *
372178 TT-GTGATTAGGCACTATAAACACATTCTTCC-CATT
123 TTCAAGATTAGGCACCATAAACACAGTC-TCCTTATA
* * * * * ** * * ** * **
372213 AGGGTAAATAATAGTGATGATTTTCTTTTGCGTGAAAATG-TTTTCTTTGC--CTTATTTTCCTT
1 AGGATACATGATATTGATGCTTTGGTCTCGCAAGAAAA-GCTTTTCTTT-CAAC-CATTTTTGTT
* * * * * * * ** * *
372275 AAAATCAAAGTTCATCCCATT-AATAAGGCAAGCATTGATTCTTGGAAC-AGCCTCCATTCTTTT
63 AGAATCAAAGTTCGTCTC-TTAAATAAGACAAACATAGAATAGT-CAACTATCCT-CATTCTTTT
* * * **
372338 CAAGATTGGGAACCAAAAAGC-CCTTC-CCTTCA-A
125 CAAGATTAGGCACCATAAA-CACAGTCTCCTT-ATA
* * * * * *
372371 TAGGATACTTGACATTGATGCTTTGGTCGCACAAGAAAAGCTTTTCTTTCAACCGTTTTGGTTAG
1 -AGGATACATGATATTGATGCTTTGGTCTCGCAAGAAAAGCTTTTCTTTCAACCATTTTTGTTAG
*
372436 AATCAAAGTTTGTCTCTTAAATAAGACAAACA-AGAATAGTCACACTATTCCAT-ATTCTTTTCA
65 AATCAAAGTTCGTCTCTTAAATAAGACAAACATAGAATAGTCA-ACTA-TCC-TCATTCTTTTCA
** *
372499 AGATTAGGCACCATAAACGTAGTCTACTTATA
127 AGATTAGGCACCATAAACACAGTCTCCTTATA
* * * * * *
372531 AGGATACACGATATTGACGCTTTGGTTTCACAA-AAAAGGC-TTTCTTCCCACCAATTTTTG-TA
1 AGGATACATGATATTGATGCTTTGGTCTCGCAAGAAAA-GCTTTTCTTTCAACC-ATTTTTGTTA
* * * * * *
372593 -AAGTCTAAGTTCGTGTCTCAAA-AGAGACAAACATGGATTCTAGT-AA-TGATCATCATTCATT
64 GAA-TCAAAGTTCGTCTCTTAAATA-AGACAAACATAGA--ATAGTCAACT-ATCCTCATTC-TT
** * * * *
372654 TT-GTGATTAGGCACTATAAACACATTCTTCC-CATT
123 TTCAAGATTAGGCACCATAAACACAGTC-TCCTTATA
* * * * * ** * * ** * **
372689 AGGGTAAATAATAGTGATGATTTTCTTTTGCGTGAAAATG-TTTTCTTTGC--CTTATTTTCCTT
1 AGGATACATGATATTGATGCTTTGGTCTCGCAAGAAAA-GCTTTTCTTT-CAAC-CATTTTTGTT
* * * * * * ** * *
372751 AAAATCAAAGTTCATCCCATT-AATAAGGCAAGCATTG-ATTCTCGGAA-GAGCCTCCATTCTTT
63 AGAATCAAAGTTCGTCTC-TTAAATAAGACAAACATAGAATAGTC--AACTATCCT-CATTCTTT
* * * *
372813 TCAAGATTGGGAACCAAAAACACAATC-CCTTCA-A
124 TCAAGATTAGGCACCATAAACACAGTCTCCTT-ATA
* * * *
372847 TAGGATACTTGACATTGATACTTTGGTCTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGTTAG
1 -AGGATACATGATATTGATGCTTTGGTCTCGCAAGAAAAGCTTTTCTTTCAACCATTTTTGTTAG
* * * *
372912 AATCAAAGTTTGCCTCTTAAATAAGACAAATA-AGAATAGTCATACTAATCCTCATTCTTTTCAC
65 AATCAAAGTTCGTCTCTTAAATAAGACAAACATAGAATAGTCA-ACT-ATCCTCATTCTTTTCAA
* *
372976 GATTAGGCACCATAAACATAGTCTACTTATA
128 GATTAGGCACCATAAACACAGTCTCCTTATA
* * * * * * ** *
373007 AGGATACACGATATTGACGCTCTGGT-TCCACAAGAAAGGC-TTTCTTCCCCCCAATTTTTG-CA
1 AGGATACATGATATTGATGCTTTGGTCT-CGCAAGAAAAGCTTTTCTTTCAACC-ATTTTTGTTA
* * * ** * * * * * *
373069 -ATGTCTAACTTCGTGGCTCAAATGAGACAAACATGGATTCTAGT-AA-TGATCTTTATTCATTT
64 GA-ATCAAAGTTCGTCTCTTAAATAAGACAAACATAGA--ATAGTCAACT-ATCCTCATTC-TTT
** ** * * ** *
373131 T-GTGATTAGGCAATATAAACGCATTCTCCCCATT
124 TCAAGATTAGGCACCATAAACACAGTCTCCTTATA
* * * ** * * * * * **
373165 AGGGTAAATGATATTGATGATTTTCTTTTGCATGGAAATG-TTTTCTTTGC--CTTATTTTCCTT
1 AGGATACATGATATTGATGCTTTGGTCTCGCA-AGAAAAGCTTTTCTTT-CAAC-CATTTTTGTT
* * * * * * ** * *
373227 AAAATCAAAGTTCATCTATT-AATAAGGCAAACATTGATTCTTGGAAC-AGCCTCCATTCTTTTC
63 AGAATCAAAGTTCGTCTCTTAAATAAGACAAACATAGAATAGT-CAACTATCCT-CATTCTTTTC
* * * *
373290 AAGATTAGGAACCAAAAACCCATTC-CCTTCA-A
126 AAGATTAGGCACCATAAACACAGTCTCCTT-ATA
* * * * *
373322 TAGGATACTTGACATTGATGCTTTGGTCGCGCAAGAAAAGCTTTTCTTTCAACCGTTTTGGTTAG
1 -AGGATACATGATATTGATGCTTTGGTCTCGCAAGAAAAGCTTTTCTTTCAACCATTTTTGTTAG
* *
373387 AATCAAAGTTTGTCTCTTAAATAAGACAAACA-AGAATAGTTATACTATTCC-CTATTCTTTTCA
65 AATCAAAGTTCGTCTCTTAAATAAGACAAACATAGAATAGTCA-ACTA-TCCTC-ATTCTTTTCA
* * *
373450 AGATTGGGAACCA-AAAGCACAATC-CCTTCA-A
127 AGATTAGGCACCATAAA-CACAGTCTCCTT-ATA
* * * *
373481 TAGGATACTTGACATTGATGCTTTGGTCTCGCAAGAAAAGCTTTTCTTTCAATCGTTTTTGTTAG
1 -AGGATACATGATATTGATGCTTTGGTCTCGCAAGAAAAGCTTTTCTTTCAACCATTTTTGTTAG
* * *
373546 AATCAAAGTTTGTCTCTTAAATAAGACAAATA-AGAATAGTCATACTAATCCTCATTCTTTTCAC
65 AATCAAAGTTCGTCTCTTAAATAAGACAAACATAGAATAGTCA-ACT-ATCCTCATTCTTTTCAA
* * *
373610 GATTAGGCACCATAAACATAGTCTTCTCATA
128 GATTAGGCACCATAAACACAGTCTCCTTATA
* * * * * * * *
373641 AGGATACACGATATTGACGCTTTGGTTTTGCAAG-AAAGGTTTTCTTCCCACCAATTTTT-ATA-
1 AGGATACATGATATTGATGCTTTGGTCTCGCAAGAAAAGCTTTTCTTTCAACC-ATTTTTGTTAG
* * * * * * * * *
373703 ATGTCTAAGTTCGTAC-CTCATATGAGACCAACATGGATTCTAGT-AA-TGATCTTCATTCATTT
65 A-ATCAAAGTTCGT-CTCTTAAATAAGACAAACATAGA--ATAGTCAACT-ATCCTCATTC-TTT
** * * * ** *
373765 T-GTGATTAGGCGCTATAAACACATTCTCCTCCTT
124 TCAAGATTAGGCACCATAAACACAGTCTCCTTATA
* * ** * ** *
373799 AGGATTA-ATGATATTTATGATTTTATTTTACGTGA-AAAATCTTTTCTTTGC--CCTATTTTCT
1 AGGA-TACATGATATTGATG-CTTTGGTCT-CGCAAGAAAAGCTTTTCTTT-CAACC-ATTTT-T
* * ** * * ** * * **
373860 -TTAAAATCAAAATTCACCGCTTAAGTTTGACAAGCAT-CAATTCTCGGAAC-AGT-CTCCATTC
60 GTTAGAATCAAAGTTCGTCTCTTAAATAAGACAAACATAGAATAGTC--AACTA-TCCT-CATTC
* * * * *
373921 TTTTCAAGTTTGGGAACCA-ATAACACATTC-CCTTGATT
121 TTTTCAAGATTAGGCACCATA-AACACAGTCTCCTT-ATA
* ** * * *
373959 AGGATACAAGGCATTGATGCTTTGGTATC-CAAAGAAAAGCTTTTCTTTCGACCACTTTTGTTAG
1 AGGATACATGATATTGATGCTTTGGTCTCGC-AAGAAAAGCTTTTCTTTCAACCATTTTTGTTAG
* * * * * * * *
374023 ATTCAAAGTTTGTCTCTTTAATAAGACGAACAT-GAATAGTCATACTAACCCCTATTCTTTTTAG
65 AATCAAAGTTCGTCTCTTAAATAAGACAAACATAGAATAGTCA-ACTATCCTC-ATTCTTTTCAA
* * * ***
374087 GATTAGGCACCACAAACATAGTCTTCACCTA
128 GATTAGGCACCATAAACACAGTCTCCTTATA
* * * * * *
374118 AGGATACAAGATATTGACGCTTTGGTTTCGCAA-AAAATGC-TTTCTTCCTACCAATTTTTG-CA
1 AGGATACATGATATTGATGCTTTGGTCTCGCAAGAAAA-GCTTTTCTTTCAACC-ATTTTTGTTA
* * * * * * *
374180 -AAGTCTAAGTGCGTGC-CTTGAATAAGTCAAACATGGATTCTAG-C-ACTGATCTTCATTCATT
64 GAA-TCAAAGTTCGT-CTCTTAAATAAGACAAACATAGA--ATAGTCAACT-ATCCTCATTC-TT
** * * * * ** *
374241 TT-GTGATTAGGCACTACAAACAAATTAACCTTATT
123 TTCAAGATTAGGCACCATAAACACAGTCTCCTTATA
** * * ** * * * * *
374276 ACTATAAATGATATTGATGATTTTATTTTGCAAGGAAATG-TTTCCTTTGC--CCTATTTTTCTT
1 AGGATACATGATATTGATGCTTTGGTCTCGCAA-GAAAAGCTTTTCTTT-CAACC-ATTTTTGTT
* * * * * * * ** *
374338 AAAATCAAAGTTCATC-CCTAAAAAAGGCAAGCATTG-ATTTTCGCAAC-AGTCCTCATTCTTCT
63 AGAATCAAAGTTCGTCTCTTAAATAAGACAAACATAGAATAGT--CAACTA-TCCTCATTCTTTT
* * * * *
374400 CAAGATTGGGAACCAAAAACATA-T-TCCATTCATT
125 CAAGATTAGGCACCATAAACACAGTCTCC-TT-ATA
* * ** ** * * * *
374434 AGGATACTTGACATTGATGCTTTGGGATCATAAGAAAAGCTATTCTTTCCACCGTTTTTGATAGA
1 AGGATACATGATATTGATGCTTTGGTCTCGCAAGAAAAGCTTTTCTTTCAACCATTTTTGTTAGA
* * * * * **
374499 AT-TAATTTTGTCTCTAAAATAAGACAAACAT-TAATAGTCATACTAATCC-CTATTCTTTTCTG
66 ATCAAAGTTCGTCTCTTAAATAAGACAAACATAGAATAGTCA-ACT-ATCCTC-ATTCTTTTCAA
* * * **
374561 GATTAGGCACCATAAATATAGTCTACAAATA
128 GATTAGGCACCATAAACACAGTCTCCTTATA
* * * * * *
374592 AGGGTACACGATATTGATGCTTTGGTTTCGCAAGAAAGGC-TGTC-TTCACACCAATTTTT-ATA
1 AGGATACATGATATTGATGCTTTGGTCTCGCAAGAAAAGCTTTTCTTTCA-ACC-ATTTTTGTTA
* * * * * *
374654 -ATGTCTAAA-TTCGTGC-CTCAAATGAGACAAACATGGATTCTAGT-AA-TGATCTTCATTCCT
64 GA-ATC-AAAGTTCGT-CTCTTAAATAAGACAAACATAGA--ATAGTCAACT-ATCCTCATT-CT
** * * * ** *
374714 TTT-GTGATTAGGCACTATAAACAGATTCTCCCCATT
122 TTTCAAGATTAGGCACCATAAACACAGTCTCCTTATA
* * * * * * * * * * *
374750 AGGGTAAATGATGTTGATGATGTT-CTTTCGCATGGAAATG-TTTCCTTT--GCCATATTTTCCT
1 AGGATACATGATATTGATGCT-TTGGTCTCGCA-AGAAAAGCTTTTCTTTCAACCAT-TTTT-GT
* * * * * * * * *
374811 TAAAATCAACA-TTCATCCCACT-AATAAGGCAAGCGTTGATTCTAGT-AAC-AGTCC-CATTCT
62 TAGAATCAA-AGTTCGTCTC-TTAAATAAGACAAACATAGA--ATAGTCAACTA-TCCTCATTCT
* * * * * * * *
374871 TCTCAAGATTGGGAACCAAAAACATATTC-CCTTCTTT
122 TTTCAAGATTAGGCACCATAAACACAGTCTCCTT-ATA
* * * *
374908 AGGATACATGACATTGATGCTTTGGTCTCGCAAGAACAGCTTTTCTTTCAACCGTTTTGGTTAGA
1 AGGATACATGATATTGATGCTTTGGTCTCGCAAGAAAAGCTTTTCTTTCAACCATTTTTGTTAGA
* * * * *
374973 ATCAAAGTTTGTCTCTTAAATAATACAAATA-AGAATAGTCATACTAATCCCCATTCTTTTCAGG
66 ATCAAAGTTCGTCTCTTAAATAAGACAAACATAGAATAGTCA-ACT-ATCCTCATTCTTTTCAAG
* * *
375037 ATTAGGCACCATAAACATAGTCTTCTCATA
129 ATTAGGCACCATAAACACAGTCTCCTTATA
* * * * * * * *
375067 AGGATACACGATATTGACGCTTTGGTTTTGCAAGAAAGGC-TTTCTTCCCACCACTTTTT-ATA-
1 AGGATACATGATATTGATGCTTTGGTCTCGCAAGAAAAGCTTTTCTTTCAACCA-TTTTTGTTAG
* * * * * *
375129 ATGTCTAAA-TTCGTGC-CTCAAATGAGACAAACATGGATTCTAGT-AA-TGATCTTCATTCCTT
65 A-ATC-AAAGTTCGT-CTCTTAAATAAGACAAACATAGA--ATAGTCAACT-ATCCTCATT-CTT
** * * * ** *
375190 TT-GTGATTAGGCACTATAAACAGATTCTCCCCATT
123 TTCAAGATTAGGCACCATAAACACAGTCTCCTTATA
* * * * * * * * * * *
375225 AGGGTAAATGATGTTGATGATGTT-CTTTCGCATGGAAATG-TTTCCTTT--GCCATATTTTCCT
1 AGGATACATGATATTGATGCT-TTGGTCTCGCA-AGAAAAGCTTTTCTTTCAACCAT-TTTT-GT
* * * * * * * * *
375286 TAAAATCAACA-TTCATCCCACT-AATAAGGCAAGCGTTGATTCTAGT-AAC-AGTCC-CATTCT
62 TAGAATCAA-AGTTCGTCTC-TTAAATAAGACAAACATAGA--ATAGTCAACTA-TCCTCATTCT
* * * * * * * *
375346 TCTCAAGATTGGGAACCAAAAACATATTC-CCTTCTTT
122 TTTCAAGATTAGGCACCATAAACACAGTCTCCTT-ATA
* * * *
375383 AGGATACATGACATTGATGCTTTGGTCTCGCAAGAACAGCTTTTCTTTCAACCGTTTTGGTTAGA
1 AGGATACATGATATTGATGCTTTGGTCTCGCAAGAAAAGCTTTTCTTTCAACCATTTTTGTTAGA
* * * * *
375448 ATCAAAGTTTGTCTCTTAAATAATACAAATA-AGAATAGTCATACTAATCCCCATTCTTTTCAGG
66 ATCAAAGTTCGTCTCTTAAATAAGACAAACATAGAATAGTCA-ACT-ATCCTCATTCTTTTCAAG
* * *
375512 ATTAGGCACCATAAACATAGTCTTCTCATA
129 ATTAGGCACCATAAACACAGTCTCCTTATA
* * * * * * * *
375542 AGGATACACGATATTGACGCTTTGGTTTTGCAAGAAAGGC-TTTCTTCCCACCACTTTTT-ATA-
1 AGGATACATGATATTGATGCTTTGGTCTCGCAAGAAAAGCTTTTCTTTCAACCA-TTTTTGTTAG
* * * * * * * * * *
375604 ATGTCTATGTTCGGGC-CTCATAA-GAGACCAACATGGATTCTAGT-AA-TGATCTTCATTCATT
65 A-ATCAAAGTTC-GTCTCTTA-AATAAGACAAACATAGA--ATAGTCAACT-ATCCTCATTC-TT
** * * ** *
375665 TT-GTGATTAGGCACTATAAACACATTCTCCTCCTT
123 TTCAAGATTAGGCACCATAAACACAGTCTCCTTATA
* * ** *
375700 AGGATTA-ATGATATTGACGATTT--TCTTTCATGTGAAAA--TTTT-TTTGC--CCTATTTTCT
1 AGGA-TACATGATATTGATGCTTTGGTCTCGCA--AGAAAAGCTTTTCTTT-CAACC-ATTTT-T
* * ** * * * * * ** *
375757 -TTAAAATCAAAATTCACCACTTAAGTATGACAAGCATCG-ATTCTCGGAA-TAGCCTCCATTCT
60 GTTAGAATCAAAGTTCGTCTCTTAAATAAGACAAACATAGAATAGTC--AACTATCCT-CATTCT
* * * * *
375819 TTTCAAGATTGGGAACTA-ATAACACATTC-CCTTGATT
122 TTTCAAGATTAGGCACCATA-AACACAGTCTCCTT-ATA
* * * * * **
375856 AGGATACAAGACATTGATGCTTTGGTGTCGAAAGAAAAGATTTTCTTTCAACCGCTTTTGTTAGA
1 AGGATACATGATATTGATGCTTTGGTCTCGCAAGAAAAGCTTTTCTTTCAACCATTTTTGTTAGA
* * * *
375921 ATCAAAGTTTGTCTCTTTAATAAGACGAACAT-GAATAGTCATACTAATCCTCATTCTTTTCCAG
66 ATCAAAGTTCGTCTCTTAAATAAGACAAACATAGAATAGTCA-ACT-ATCCTCATTCTTTTCAAG
* ** * *
375985 ATTGGGCACCATAAACATGGTCTACATATA
129 ATTAGGCACCATAAACACAGTCTCCTTATA
* * * * *
376015 AGGATACATGATATTGATGCTTTGGTTTCGCAAG--AAG-TTTGTCTTCCCACTAATTTTT-ATA
1 AGGATACATGATATTGATGCTTTGGTCTCGCAAGAAAAGCTTT-TCTTTCAAC-CATTTTTGTTA
* * * * *
376076 -ATGTCTAAA-TTCGTGC-CTCAAATAAGACAAACATGGATTCTAGT-AA-TGATCTTCATTCAT
64 GA-ATC-AAAGTTCGT-CTCTTAAATAAGACAAACATAGA--ATAGTCAACT-ATCCTCATTC-T
** * * * *
376136 TTT-GTGATTAGGCACTATAAACACATTCTCCTCATT
122 TTTCAAGATTAGGCACCATAAACACAGTCTCCTTATA
* * * * * * * * *
376172 AGGGTAAATGATATTGATGATTT-TTTTC-CACATGGAAATG-TTTCCTTT--GCCATATTTTCC
1 AGGATACATGATATTGATGCTTTGGTCTCGCA-A--GAAAAGCTTTTCTTTCAACCAT-TTTT-G
* * * * * * * ** * *
376232 TTCA-AATCAACGTTCATCCCATT-AATAAGGCAAGCATTGATTCTTGGAAC-AGCCTCTATTC-
61 TT-AGAATCAAAGTTCGTCTC-TTAAATAAGACAAACATAGAATAGT-CAACTATCCTC-ATTCT
** * * *
376293 TTAAAAGATTGGGAACCA-AAATCACATTC-CCTTCA-A
122 TTTCAAGATTAGGCACCATAAA-CACAGTCTCCTT-ATA
* * * * * * * *
376329 TAGGACACTTGACATTGATGGTTTGCTTTCGCAAGAAGAGCTTTTCTTTCAACCATTTTGGTTAG
1 -AGGATACATGATATTGATGCTTTGGTCTCGCAAGAAAAGCTTTTCTTTCAACCATTTTTGTTAG
* * * * * * *
376394 AATCAAATTTTGTCTCTTAAATACGAGAAATA-AGAATAGTCATACTAATCCCCATTCTTTTCAG
65 AATCAAAGTTCGTCTCTTAAATAAGACAAACATAGAATAGTCA-ACT-ATCCTCATTCTTTTCAA
* * * *
376458 GATTAGGCACCTTAAACATAGTCTTCTCATA
128 GATTAGGCACCATAAACACAGTCTCCTTATA
* * * *
376489 AGGATACACGATATTGACGTTTTGGTTTCGCAAGAAAAGCTTT
1 AGGATACATGATATTGATGCTTTGGTCTCGCAAGAAAAGCTTT
376532 CTTCCCACCA
Statistics
Matches: 9032, Mismatches: 2983, Indels: 2030
0.64 0.21 0.14
Matches are distributed among these distances:
153 2 0.00
154 2 0.00
155 46 0.01
156 199 0.02
157 841 0.09
158 3531 0.39
159 3907 0.43
160 407 0.05
161 96 0.01
162 1 0.00
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.35
Consensus pattern (158 bp):
AGGATACATGATATTGATGCTTTGGTCTCGCAAGAAAAGCTTTTCTTTCAACCATTTTTGTTAGA
ATCAAAGTTCGTCTCTTAAATAAGACAAACATAGAATAGTCAACTATCCTCATTCTTTTCAAGAT
TAGGCACCATAAACACAGTCTCCTTATA
Found at i:373677 original size:634 final size:636
Alignment explanation
Indices: 372806--374083 Score: 1909
Period size: 634 Copynumber: 2.0 Consensus size: 636
372796 AAGAGCCTCC
372806 ATTCTTTTCAAGATTGGGAACCAAAAACACAATCCCTTCAATAGGATACTTGACATTGATACTTT
1 ATTCTTTTCAAGATTGGGAACCAAAAACACAATCCCTTCAATAGGATACTTGACATTGATACTTT
372871 GGTCTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGTTAGAATCAAAGTTTGCCTCTTAAATAA
66 GGTCTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGTTAGAATCAAAGTTTGCCTCTTAAATAA
372936 GACAAATAAGAATAGTCATACTAATCCTCATTCTTTTCACGATTAGGCACCATAAACATAGTCTA
131 GACAAATAAGAATAGTCATACTAATCCTCATTCTTTTCACGATTAGGCACCATAAACATAGTCTA
* *
373001 CTTATAAGGATACACGATATTGACGCTCTGGTTCCACAAGAAAGGCTTTCTTCCCCCCAATTTTT
196 CTCATAAGGATACACGATATTGACGCTCTGGTTCCACAAGAAAGGCTTTCTTCCCACCAATTTTT
* ** *
373066 GCAATGTCTAACTTCGTGGCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTTATTCATTT
261 ACAATGTCTAACTTCGTACCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTT
* * * *
373131 TGTGATTAGGCAATATAAACGCATTCTCC-CCATTAGGGTAAATGATATTGATGATTTTCTTTTG
326 TGTGATTAGGCAATATAAACACATTCTCCTCC-TTAGGATAAATGATATTGATGATTTTATTTTA
* * * * * * *
373195 CATG-GAAATGTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCTATTAA-TAAGGCAAA
390 CATGAAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCACCGATTAAGTAAGACAAA
** * *
373258 CATTGATTCTTGGAACAGCCTCCATTCTTTTCAAGATTAGGAACCAAAAACCCATTCCCTTCAAT
455 CATCAATTCTCGGAACAGCCTCCATTCTTTTCAAGATTAGGAACCAAAAACACATTCCCTTCAAT
** * *
373323 AGGATACTTGACATTGATGCTTTGGTCGCGC-AAGAAAAGCTTTTCTTTCAACC-GTTTTGGTTA
520 AGGATACAAGACATTGATGCTTTGGTAGC-CAAAGAAAAGCTTTTCTTTCAACCACTTTT-GTTA
* **
373386 GAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATAGTTATACTATTCCCT
583 GAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATAGTCATACTAACCCCT
* *
373440 ATTCTTTTCAAGATTGGGAACCAAAAGCACAATCCCTTCAATAGGATACTTGACATTGATGCTTT
1 ATTCTTTTCAAGATTGGGAACCAAAAACACAATCCCTTCAATAGGATACTTGACATTGATACTTT
* *
373505 GGTCTCGCAAGAAAAGCTTTTCTTTCAATCGTTTTTGTTAGAATCAAAGTTTGTCTCTTAAATAA
66 GGTCTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGTTAGAATCAAAGTTTGCCTCTTAAATAA
*
373570 GACAAATAAGAATAGTCATACTAATCCTCATTCTTTTCACGATTAGGCACCATAAACATAGTCTT
131 GACAAATAAGAATAGTCATACTAATCCTCATTCTTTTCACGATTAGGCACCATAAACATAGTCTA
* *** *
373635 CTCATAAGGATACACGATATTGACGCTTTGGTTTTGCAAGAAAGGTTTTCTTCCCACCAATTTTT
196 CTCATAAGGATACACGATATTGACGCTCTGGTTCCACAAGAAAGGCTTTCTTCCCACCAATTTTT
* * * *
373700 ATAATGTCTAAGTTCGTACCTCATATGAGACCAACATGGATTCTAGTAATGATCTTCATTCATTT
261 ACAATGTCTAACTTCGTACCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTT
** * *
373765 TGTGATTAGGCGCTATAAACACATTCTCCTCCTTAGGATTAATGATATTTATGATTTTATTTTAC
326 TGTGATTAGGCAATATAAACACATTCTCCTCCTTAGGATAAATGATATTGATGATTTTATTTTAC
* * * ** *
373830 GTGAAAAATCTTTTCTTTGCCCTATTTTCTTTAAAATCAAAATTCACCGCTTAAGTTTGACAAGC
391 ATGAAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCACCGATTAAGTAAGACAAAC
* * * * * *
373895 ATCAATTCTCGGAACAGTCTCCATTCTTTTCAAGTTTGGGAACCAATAACACATTCCCTTGATTA
456 ATCAATTCTCGGAACAGCCTCCATTCTTTTCAAGATTAGGAACCAAAAACACATTCCCTTCAATA
* * * *
373960 GGATACAAGGCATTGATGCTTTGGTATCCAAAGAAAAGCTTTTCTTTCGACCACTTTTGTTAGAT
521 GGATACAAGACATTGATGCTTTGGTAGCCAAAGAAAAGCTTTTCTTTCAACCACTTTTGTTAGAA
* * *
374025 TCAAAGTTTGTCTCTTTAATAAGACGAACATGAATAGTCATACTAACCCCT
586 TCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATAGTCATACTAACCCCT
374076 ATTCTTTT
1 ATTCTTTT
374084 TAGGATTAGG
Statistics
Matches: 574, Mismatches: 65, Indels: 8
0.89 0.10 0.01
Matches are distributed among these distances:
634 361 0.63
635 45 0.08
636 164 0.29
637 4 0.01
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.35
Consensus pattern (636 bp):
ATTCTTTTCAAGATTGGGAACCAAAAACACAATCCCTTCAATAGGATACTTGACATTGATACTTT
GGTCTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGTTAGAATCAAAGTTTGCCTCTTAAATAA
GACAAATAAGAATAGTCATACTAATCCTCATTCTTTTCACGATTAGGCACCATAAACATAGTCTA
CTCATAAGGATACACGATATTGACGCTCTGGTTCCACAAGAAAGGCTTTCTTCCCACCAATTTTT
ACAATGTCTAACTTCGTACCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTT
TGTGATTAGGCAATATAAACACATTCTCCTCCTTAGGATAAATGATATTGATGATTTTATTTTAC
ATGAAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCACCGATTAAGTAAGACAAAC
ATCAATTCTCGGAACAGCCTCCATTCTTTTCAAGATTAGGAACCAAAAACACATTCCCTTCAATA
GGATACAAGACATTGATGCTTTGGTAGCCAAAGAAAAGCTTTTCTTTCAACCACTTTTGTTAGAA
TCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATAGTCATACTAACCCCT
Found at i:373686 original size:475 final size:475
Alignment explanation
Indices: 357822--373454 Score: 20362
Period size: 476 Copynumber: 32.9 Consensus size: 475
357812 TCTTCTCGTT
* * * * * * * * *
357822 AGGATAGACGGTATTGATGCTTTAGTTTGATAAGAAAGGCTTTC-TCCCTACTAATTTTTATAAA
1 AGGATACACGATATTGACGCTTTGGTTTCACAAGAAAGGCTTTCTTCCC-ACCAATTTTTGTAAT
* *
357886 GTCTAAGTTCGTACCTCAAATGAGTCAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGA
65 GTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGA
* *** * *
357951 TTAGGCACTACAAACACATTC-TCCTCATTACTATAAATGATATTGATGATTTTATTTTGCAGGG
130 TTAGGCACTATAAACACATTCTTCC-CATTAGGGTAAATGATATTGATGATTTTCTTTTGCA-TG
* * * *
358015 AAATGTTTCCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCCTAAATAAGGCAAGCATTGA
193 AAATGTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCCCATTAATAAGGCAAGCATTGA
* * * * * *
358080 ATCTCGTAACAGTCC-CTATTCTTCTCAAGATTGGGAACCAAAAACATATTCCCTTCATTAGGAT
258 TTCTCGGAACAG-CCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCAATAGGAT
* ** * * * * *
358144 ACATGACATTGA--CATTTGGGATCGCAAGAAAAGCTATTCTTTCTACCATTTTTGATAGAATTA
322 ACTTGACATTGATGC-TTTGGTCTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGTTAGAATCA
* * * * *
358207 AAGTTTGTGTCTTAACTAAGACAAACATA-AACAGTCATACCAATCCCTATTCTTTTTC-GGATT
386 AAGTTTGTCTCTTAAATAAGACAAACA-AGAATAGTCATACTAATCCCTATTC-TTTTCAAGATT
* * ** *
358270 AGGCACCATAAATATAGTCTTCTCGTT
449 AGGCACCATAAACATAGTCTACTTATA
* * * * * * * *
358297 AGGATATACGGTATTGATGCTTTGGTTTCCCAAGAAAGGCTTTCTCCCCACTAATTTTTATAAAG
1 AGGATACACGATATTGACGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAATG
* * * * * *
358362 TCAAAGTTTGTCCCTCAAATAAGTCAAACATGGATTCTAGTAATGATCTTCATTCATTTTTTTGA
66 TCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCA-TTTTGTGA
* ** * * *
358427 TTAGGCACTATAAACACATTC-TCCTCAATACCGTAAATGATATTAATGATTTTATTTTGAATGG
130 TTAGGCACTATAAACACATTCTTCC-CATTAGGGTAAATGATATTGATGATTTTCTTTTGCAT-G
* * *
358491 AAATGTTTCCTTTGCCCTATTGTCCTTAAAATCAAAGTTCATCCC-TTAAATAAGGCAAGCATTG
193 AAATGTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCCCATT-AATAAGGCAAGCATTG
* * * * * * *
358555 ATTCTTGAAACTGTCC-CTATTCTTCTT-AAGATTGGGAACCAAAAACATATTCTCTTCATTAGG
257 ATTCTCGGAACAG-CCTCCATTCTT-TTCAAGATTGGGAACCAAAAACACATTCCCTTCAATAGG
* * * ** * * * * * * *
358618 ATACATGGCATTTATGCTTTGGGATTGCCAGAACAGCTATTCTTTCCACCTTTTTTGATAGAATC
320 ATACTTGACATTGATGCTTTGGTCTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGTTAGAATC
* * * * *
358683 AAAGTTTGTCTCTTAAATAAGACAAATATGAATAGTCATACCAATCCCCATTCTTTTCAGGATTA
385 AAAGTTTGTCTCTTAAATAAGACAAACAAGAATAGTCATACTAATCCCTATTCTTTTCAAGATTA
* * * * *
358748 CGCACCATAAATATAGTATTCTCATTA
450 GGCACCATAAACATAGTCTACTTA-TA
* * ** * ** *
358775 A-GATAGATGATATTGATACTTTGGTTTCACAAGAAAGGCTTTCTTCCCTCCAATTTCCGTAAAG
1 AGGATACACGATATTGACGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAATG
* * * ** * **
358839 TCTAACTGT-GTGCCTCAAATAAGTCAAACATGGATTCCGGTAACGATCTTCATTCATTTCATGA
66 TCTAAGT-TCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGA
* * *
358903 TTAGACACAATAAACACATTC-TCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGA
130 TTAGGCACTATAAACACATTCTTCC-CATTAGGGTAAATGATATTGATGATTTTCTTTTGCATG-
* * * * *
358967 AAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAAATTCATCCC-TTAAATATGACAAGAATTG
193 AAATGTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCCCATT-AATAAGGCAAGCATTG
* * * * * *** * *
359031 ATTCTCGTAATAGTCTCCATTCTTTTCAAAATTGGGAACCAAGATTGCATTCGCTTCATTAGGAT
257 ATTCTCGGAACAGCCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCAATAGGAT
* * * * * * * * * *
359096 GCATGGCATTGATGCTTTGGTGTCACAAGAAAACCTTTTATTTCAATC-ATTTTGATAGAATCAA
322 ACTTGACATTGATGCTTTGGTCTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGTTAGAATCAA
** * * * *
359160 AGTATACTACCTCTTAAATAAGATAAACACA-AATAGTCATACTCATCCCCATTCTTTTCAGGAT
387 AGT-T--TGTCTCTTAAATAAGACAAACA-AGAATAGTCATACTAATCCCTATTCTTTTCAAGAT
*
359224 TAGGCACCATAAACGTAGTCTACTTATA
448 TAGGCACCATAAACATAGTCTACTTATA
359252 AGGATACACGATATTGA-GACTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAT
1 AGGATACACGATATTGACG-CTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAT
* * *
359316 GACTAAGTTCGTGCCTCAAATGAGACACACATGGATTCTAGTAAAGATCTTCATTCATTTTGTGA
65 GTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGA
* * * * *
359381 TTAGGAACCATAAACACATTC-TCCGCTTTAGGGTAAATGGTATTGATGATTTTCTTTTACATGA
130 TTAGGCACTATAAACACATTCTTCC-CATTAGGGTAAATGATATTGATGATTTTCTTTTGCATG-
* * * * * *
359445 AAATGTTTTCTTTGCCTTTTTTTTTCCCTAAAATCAAAGTTCATCCTATTAATACGGTAAGTATT
193 AAATGTTTTCTTTGCC--TTATTTTCCTTAAAATCAAAGTTCATCCCATTAATAAGGCAAGCATT
* * * *
359510 GATTCTTC-GAACAGCCTTCATTCTTTTCAAGACTGGGAACCAAAAACACATTCCCTTAAATAAG
256 GATTC-TCGGAACAGCCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCAATAGG
* * *
359574 ATACTTGACATTGATGCTTTGGTCTCGCATGAAAAGCTTTTCTTTCAATCGTTTTGGTTAGAATC
320 ATACTTGACATTGATGCTTTGGTCTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGTTAGAATC
* * *
359639 AAAATTTGTCTCTTAAATAAGACAAACAAGAATAGTCATACTAATCCCCATTCTTTTCAGGATTA
385 AAAGTTTGTCTCTTAAATAAGACAAACAAGAATAGTCATACTAATCCCTATTCTTTTCAAGATTA
* * * *
359704 GGCACCACAAACATAGTCTTCTCATC
450 GGCACCATAAACATAGTCTACTTATA
* * * * * * * * *
359730 AGGATACATGATATTGATGCTCTGGCTTCGCAAG-ATGGTTTTTTTCCCACCAATTTTTATAATG
1 AGGATACACGATATTGACGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAATG
* * * * * * * *
359794 TCTAACTTCGTGCCTGATATAAGACCAACATGGATTCTAGTAATGATCTCCATTC-TTTTATGCT
66 TCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGAT
* * * ***
359858 TAGGCAC-ATAAACACA-TC-TCCTCCTTAGGATTAATGATATTGACT-ATTTTCTTTTATGTGC
131 TAGGCACTATAAACACATTCTTCC-CATTAGGGTAAATGATATTGA-TGATTTTCTTTTGCATG-
* * * * * * * *
359919 AAAATCTTTTCTTTGCCCTACTTTCTTTGAAATCAAAATTCA--CCACTTAAATATGACAAGCAT
193 -AAATGTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCCCA-TT-AATAAGGCAAGCAT
* * * * * * * * *
359982 CGATTCTTGTAACAGTCTCCATTCTTTTCAAGATTTGGAAGCAATAACACATTCCCTTGATTAGG
255 TGATTCTCGGAACAGCCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCAATAGG
* * * * * *
360047 ATACATAACATTTG-TGCTTTGGTGTCGAAAGAAAAGCTTTTCTTTCAACTGCTTTTGTTAGAAT
320 ATACTTGACA-TTGATGCTTTGGTCTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGTTAGAAT
* * * * * *
360111 CAAAGTTTATCTCTTTAATAAGACGAACATGAATAGTCATACTAATCCCCATTCTTTTTC-GGAT
384 CAAAGTTTGTCTCTTAAATAAGACAAACAAGAATAGTCATACTAATCCCTATTC-TTTTCAAGAT
* * * **
360175 TAGGCGCCACAAACATAGTCTTCACATA
448 TAGGCACCATAAACATAGTCTACTTATA
* * * * * *
360203 AGGATAAACGATATTGATGCTTTGGCTTCGCAAGAATGGCTTTCTTCCCACCAATTTTTGTAACG
1 AGGATACACGATATTGACGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAATG
* * * * *
360268 TCTACGTCCGTGCCTCAAATGAGTCAAACATGGATTCTAGCAATGATCTTCATTCATTTTGTGGT
66 TCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGAT
* * ** ** * * *
360333 TATGCACTACAAACACATTCTTCTAATTA-CTTGAATGATATTGATGATTTTATTTTGCAGGGAA
131 TAGGCACTATAAACACATTCTTCCCATTAGGGTAAATGATATTGATGATTTTCTTTTGCA-TGAA
* * * * * * *
360397 ATGTTTCCTTTGCCCTATTTTCCTTAAAATCAAAGTTTATTCCGTAAAAAAGGCAAGCATTGATT
195 ATGTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCCCATTAATAAGGCAAGCATTGATT
* * * * * * * *
360462 CTCGTAACAGTCTCCATTCTTCTCAAGATTGAGATCCAAAAACATATTCCCTTCATTAGGATACC
260 CTCGGAACAGCCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCAATAGGATACT
** * * * * *
360527 TGACATTGATGCTTTGGGATCACCAGAAAAGCTATTCTTTCCACCGTTTTTGATAGAATCAAAGT
325 TGACATTGATGCTTTGGTCTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGTTAGAATCAAAGT
* ** * ***
360592 TTGTCTCTAAAATAAGACAAACATTAATAGTTATACTAATCCCTATTCTTTTTTGGATTAGGCAC
390 TTGTCTCTTAAATAAGACAAACAAGAATAGTCATACTAATCCCTATTCTTTTCAAGATTAGGCAC
360657 CATAAACATAGTCTACTTATA
455 CATAAACATAGTCTACTTATA
* * * *
360678 AAGATACACGATATTGACGCTCTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTATAATG
1 AGGATACACGATATTGACGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAATG
* * * * * * *
360743 TCAAAATTCGTGCCTCAAATGAGACAAAGATGCATTCTCGTAATGATCGTCATTTATTTTGTGAT
66 TCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGAT
* ** *
360808 TAGGCACTATAAACACGTTCACCCCATTAGGGTAAATGATATTGATGATTTTCTTTCGCATGGAA
131 TAGGCACTATAAACACATTCTTCCCATTAGGGTAAATGATATTGATGATTTTCTTTTGCAT-GAA
* *
360873 ATGTTTCCTTTGCCTTATTTTCCTTAAAATCAAAGATCATCCCATTAATAAGGCAAGCATTGATT
195 ATGTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCCCATTAATAAGGCAAGCATTGATT
* * * * *
360938 CTTGGAATAGCCTCAATTC--TTAAAAATTGGGAA-C-----CACATTCCCTTCAATAGGATACT
260 CTCGGAACAGCCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCAATAGGATACT
* *
360995 TGACATTGATGCTTTGGTCTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTGGTTAGAATTAAAGT
325 TGACATTGATGCTTTGGTCTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGTTAGAATCAAAGT
* * * * * * *
361060 TTGTCTCTCAACTAGGACAAATAAGAATAGTTATACTAATCCCCATTCTTTTCAGGATTAGGCAC
390 TTGTCTCTTAAATAAGACAAACAAGAATAGTCATACTAATCCCTATTCTTTTCAAGATTAGGCAC
* *
361125 CATAAACATAGTCTTCTCATA
455 CATAAACATAGTCTACTTATA
* * * * * *
361146 AGAATATACGATATTGATGCTTTGGTTTCACAAGAGAGGCTTTCTTCCCACCAATATTTATAATG
1 AGGATACACGATATTGACGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAATG
* * *
361211 TCTAAGTTCGTGCCTCATATGAGACCAACATGGATTCTAGTAAGGATCTTCATTCATTTTGTGAT
66 TCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGAT
* * * *
361276 TAGGCACTATAAACACATTC-TCCTCCTTAGGATTAATGATATTGATGATTTT-TTTTGCGTGAA
131 TAGGCACTATAAACACATTCTTCC-CATTAGGGTAAATGATATTGATGATTTTCTTTTGCATG-A
* * * * * * * * * *
361339 AATCTTTTTTTTGCCCTATTTTCTTTAAAACCAAAATTCA-CTGC-TTAAATATGACAAGCATCG
194 AATGTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATC-CCATT-AATAAGGCAAGCATTG
*** * * * * ***
361402 ATTCTAACAACAGTCTCCTTTCCTTTCAAGATTGGGAACCAATAACACATTCCCTTGGCTAGGAT
257 ATTCTCGGAACAGCCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCAATAGGAT
** * * * **
361467 ACTTGACATTGATGCTTTGGGATCGCAAGAAAAGCTATTT-TTTCCACCCTCTTTCATAGAATCA
322 ACTTGACATTGATGCTTTGGTCTCGCAAGAAAAGCT-TTTCTTTCAACCGTTTTTGTTAGAATCA
* *
361531 AAGTTTGTCTCTTAAATAAGACAAA-AATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTA
386 AAGTTTGTCTCTTAAATAAGACAAACAA-GAATAGTCATACTAATCCCTATTCTTTTCAAGATTA
* * *
361595 GGTACCATTAACATAGTCTACTAATTA
450 GGCACCATAAACATAGTCTACTTA-TA
* * * * * * *
361622 A-GATAGATGATATTGATGCTTTGGTTTCACAAGAAAGGCTTTTTTCCCTCTAATTTTTGTAAAG
1 AGGATACACGATATTGACGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAATG
* * * *
361686 TCTAAATTTGTGCCTCAAATAAGACAAACATGGATTCTAGTAATGATCTTCAATCATTTTGTGAT
66 TCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGAT
* *
361751 TAGGCACTATAAACACATTCTCCCCATCAGGGTAAATGATATTGATGATTTTCTTTTGCATGGAA
131 TAGGCACTATAAACACATTCTTCCCATTAGGGTAAATGATATTGATGATTTTCTTTTGCAT-GAA
* * * **
361816 ATGTTTTCTTTGCCTTATTTTCCTTAAAATAAAAGTTCATCCCAATAATAAGGCAAACACGGATT
195 ATGTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCCCATTAATAAGGCAAGCATTGATT
* *
361881 CTCGGAACAGCCTCCACTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCAATAGGTTACT
260 CTCGGAACAGCCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCAATAGGATACT
* * *
361946 TGACATTGATGCTTTGGTCTCACAAGAAAAGCTTTTCTTTCAACCGTTTTGGTTAGATTCAAAGT
325 TGACATTGATGCTTTGGTCTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGTTAGAATCAAAGT
* * *
362011 TTGTCTCTTAAATAAGATAAATAAGAATAGTCATACTAATCCCTATTCTTTTCAGGATTAGGCAC
390 TTGTCTCTTAAATAAGACAAACAAGAATAGTCATACTAATCCCTATTCTTTTCAAGATTAGGCAC
* * *
362076 CACAAACATAGTCTTCTCATA
455 CATAAACATAGTCTACTTATA
* * * * * *
362097 AGGATACACGTTATTAATGCTTTGGTTTCACAAG-ATGGTTTTCTTCCCACCAATTTTTATAATG
1 AGGATACACGATATTGACGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAATG
* * * * * * *
362161 TCTAACTTCATGCCTGATATGAGACCAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGAA
66 TCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGAT
* * * *
362226 TAGTCACTATAAACACATTC-TCCTCCTTAGGATTAATGATATTGATGA-----TTTT-C-----
131 TAGGCACTATAAACACATTCTTCC-CATTAGGGTAAATGATATTGATGATTTTCTTTTGCATGAA
* * * * * * * *
362279 ---TTTTCTTTGCCCTATTTTCATTGAAATTAAAATTCA--CCACTTAAATATGACAAGCATCGA
195 ATGTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCCCA-TT-AATAAGGCAAGCATTGA
* * * ** * * *
362339 TTCTCGTAACAGTCTCCAATCTTTTCAAGATTGGGAAATAATAACACATTCCCTTGATTAGGATA
258 TTCTCGGAACAGCCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCAATAGGATA
* * * * * * * *
362404 CATGACATTGGTGCTTCGGTGTCGAAAGAAAAGCTTTTCTTTCAACTGCTTTTGTTAGAATGAAA
323 CTTGACATTGATGCTTTGGTCTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGTTAGAATCAAA
* * * * * * * *
362469 GTTTATCTCTTTAATAAGACGAACATGAATAGTCATACTAATCCCCATTCTTTTTAGGATTAGGT
388 GTTTGTCTCTTAAATAAGACAAACAAGAATAGTCATACTAATCCCTATTCTTTTCAAGATTAGGC
* * **
362534 ACCACAAACATAGTCTTCACATA
453 ACCATAAACATAGTCTACTTATA
* ** * **
362557 AGGATACACGATATTGATGCTTTGGTTTTGCAAGAATGGCTTTCTTCCCACCAATTTTTGTAAAA
1 AGGATACACGATATTGACGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAATG
* * * *
362622 TCTAAGTACGTGCCTCAAATGAGTCAAACATGGATTCTAGCAATGATCTTCATTCATTTTGTGGT
66 TCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGAT
* ** * * ** * * * *
362687 TATGCACTGCAAACATATTC-TCCTAATTACTGTGAATGATATTGATGATTTTATTTTGTAGGGA
131 TAGGCACTATAAACACATTCTTCC-CATTAGGGTAAATGATATTGATGATTTTCTTTTGCA-TGA
* * * * * *
362751 AATGTTTCCTTTGCCTTATTTTCCTTAAAATCAAAGTTTATTCC-TTAAAAAAGGCAAGAAGTGA
194 AATGTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCCCATT-AATAAGGCAAGCATTGA
* * * * * *
362815 TTCTTGTAACAGTCC-CCATTCTTCTT-AGGATTGGGATCCAAAAACATATTCCCTTCATTAGGA
258 TTCTCGGAACAG-CCTCCATTCTT-TTCAAGATTGGGAACCAAAAACACATTCCCTTCAATAGGA
** ** * * * *
362878 TACTT-AGCATTGATGCTTTGGGATCGCAAGAAAAGCAATTCTTTCCACTGTTTTTGATAGAATA
321 TACTTGA-CATTGATGCTTTGGTCTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGTTAGAATC
* * ** * **
362942 AAAGTTTGTCCCTAAAATAAGACAAACATTAATAGTTATACTAATCCCTATTCTTTTCTGGATTA
385 AAAGTTTGTCTCTTAAATAAGACAAACAAGAATAGTCATACTAATCCCTATTCTTTTCAAGATTA
*
363007 GGCACCATAATCATAGTCTACTTATA
450 GGCACCATAAACATAGTCTACTTATA
* * **
363033 AGGATACACGATATTCACACTTTGGTTTCGTAAGAAAGGCTTTCTTCCCACCAATTTTTGTAATG
1 AGGATACACGATATTGACGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAATG
* * * *
363098 TCTAAATTCGTGCCTCAAATAAGACAAACATGGATTCTAGTAATAATCTTCATTCATTTTTTGAT
66 TCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGAT
* ** *
363163 TAGGCACTGTAAACACATTCACCCCATTAGGGTAAATGATATTGATGATTTTCTTTCGCATCGAA
131 TAGGCACTATAAACACATTCTTCCCATTAGGGTAAATGATATTGATGATTTTCTTTTGCAT-GAA
* * *
363228 ATGTTTCCTTTGCCTTATTTTCCTTAAAATCAAAGATCATCTCATTAATCAA-GCAAGCATTGAT
195 ATGTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCCCATTAAT-AAGGCAAGCATTGAT
* * * **
363292 TCTTGGAACAACCTCTATTC-TTAAAAGATTGGGAA-C-----CACATTCCCTTCAATAGGATAC
259 TCTCGGAACAGCCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCAATAGGATAC
*
363350 TTGACATTGATGCTTTGGTCTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTGGTTAGAATCAAAG
324 TTGACATTGATGCTTTGGTCTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGTTAGAATCAAAG
* * * * * * *
363415 TTTGTCTCTCAACT-AGTATAAATAAGAATAGTAATACTAATCCCCATTCTTTTCAGGATTAGGC
389 TTTGTCTCTTAAATAAG-ACAAACAAGAATAGTCATACTAATCCCTATTCTTTTCAAGATTAGGC
* *
363479 ACCATAAACATAGTCTTCTCATA
453 ACCATAAACATAGTCTACTTATA
* ** *
363502 AGGATACACGATATTGATGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTACAAGG
1 AGGATACACGATATTGACGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAATG
* * * *
363567 TCTAAGTTCGTGCCTCATATGACACCAACATGGATTCTAGTAATGATCCTCATTCATTTTGTGAT
66 TCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGAT
* * * *
363632 TAGGCACTATAAACAAATTC-TCCTCCTTAGGATTAATGATATTGATGATTTT-TTTTGCATGAA
131 TAGGCACTATAAACACATTCTTCC-CATTAGGGTAAATGATATTGATGATTTTCTTTTGCATG-A
* * * * * * * *
363695 AATCTTTTTTTTGCCCTATTTTCTTTAAAATCAAATTTCACTGCTCA--AATAAGACAAGCATCG
194 AATGTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCA-T-CCCATTAATAAGGCAAGCATTG
** * * * * ***
363758 ATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAGCCAATAACTCATTCCCTTGGTTAGGAT
257 ATTCTCGGAACAGCCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCAATAGGAT
* * * * *
363823 ACTTGACATTGATGCTTTGAG-ATCACAAGAAAAGCTATTCTTTCAACCGTTTTGGTTAGATTCA
322 ACTTGACATTGATGCTTTG-GTCTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGTTAGAATCA
* * * * *
363887 AAGTTTGTCTCTTAAATAAGATAAATAAGAATAGTCAAACTAATCCCCATTCTTTTCAGGATTAG
386 AAGTTTGTCTCTTAAATAAGACAAACAAGAATAGTCATACTAATCCCTATTCTTTTCAAGATTAG
* *
363952 GCACCATAAACATAGTCTTCTCATA
451 GCACCATAAACATAGTCTACTTATA
* ** *
363977 AGGATACACGATATTGATGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTACAAGG
1 AGGATACACGATATTGACGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAATG
* * * *
364042 TCTAAGTTCGTGCCTCATATGACACCAACATGGATTCTAGTAATGATCCTCATTCA-TTTGTGAT
66 TCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGAT
* * * *
364106 TAGGCACTATAAACAAATTC-TCCTCCTTAGGATTAATGATATTGATGATTTT-TTTTGCATGAA
131 TAGGCACTATAAACACATTCTTCC-CATTAGGGTAAATGATATTGATGATTTTCTTTTGCATG-A
* * * * * * * *
364169 AATCTTTTTTTTGCCCTATTTTCTTTAAAATCAAAATTCACTGCTCA--AATAAGACAAGCATCG
194 AATGTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCA-T-CCCATTAATAAGGCAAGCATTG
** * * * * ***
364232 ATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAGCCAATAACTCATTCCCTTGGTTAGGAT
257 ATTCTCGGAACAGCCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCAATAGGAT
* * * * *
364297 ACTTGACATTGATGCTTTGAG-ATCACAAGAAAAGCTATTCTTTCAACCGTTTTGGTTAGATTCA
322 ACTTGACATTGATGCTTTG-GTCTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGTTAGAATCA
* * * * *
364361 AAGTTTGTCTCTTAAATAAGATAAATAAGAATAGTCAAACTAATCCCCATTCTTTTCAGGATTAG
386 AAGTTTGTCTCTTAAATAAGACAAACAAGAATAGTCATACTAATCCCTATTCTTTTCAAGATTAG
* * *
364426 GCACCACAAACATAGTCTTCTCATA
451 GCACCATAAACATAGTCTACTTATA
* * * * *
364451 AGGATACATGATATTGACACTTTGGTTTCGCAAGAAAGGCTTTCTTCCCGCCAATTTTTGTAACG
1 AGGATACACGATATTGACGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAATG
* * * * * *
364516 TCTTAGTCCATGGCTCAAATGAGTCAAACATGGATTCTAGCAATGATCTTCATTCATTTTGTGAT
66 TCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGAT
*** * * *
364581 TAGGCACTATAAACACAATCTCTT--CATTACTATAAATGATATTGATAACTTTATTTTGCATGG
131 TAGGCACTATAAACAC-AT-TCTTCCCATTAGGGTAAATGATATTGATGATTTTCTTTTGCAT-G
* * * * *
364644 AAATGTTTCCTTTGCCTTATTTTTCTTAAAATCAAAGTTCATCCCATAAAAAAGGCAAGCACTGA
193 AAATGTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCCCATTAATAAGGCAAGCATTGA
* * * * * ** *
364709 TTGTCGTAATAGTCC-CCATTCTTCTCAAGATTGGGAACTAAAAACTTATTCCCTTCATTAGGAT
258 TTCTCGGAACAG-CCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCAATAGGAT
* * * * * * *
364773 ACATGACATTGATGCTTTGAGAC-CGCAAGAAAAGCTATTCTTTCTACCATTTTTGATAGAGTCA
322 ACTTGACATTGATGCTTTG-GTCTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGTTAGAATCA
* * * * *
364837 AAGTTTGTGTCTTAACTAAGACAAACATGAATAGTAATACCAATCCCTATTCTTTTTC-AGATTA
386 AAGTTTGTCTCTTAAATAAGACAAACAAGAATAGTCATACTAATCCCTATTC-TTTTCAAGATTA
** * * ** *
364901 GGCACCATAAATGTA-ACATTCTCGTC
450 GGCACCATAAACATAGTC-TACTTATA
* *
364927 AGGATACACGATATTGACGCTTTGGTATCACAAGAAAGGCTTTCTTCCCACCAATTTTTGCAATG
1 AGGATACACGATATTGACGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAATG
** * *
364992 TCTAACATCGTGCCTCAAATTAGACAAACATAGATTCTAGTAATGATCTTCATTCATTTTGTGAT
66 TCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGAT
* *
365057 TAGGCACTATAAACACATTCTCCCCATTAGGGTAAATGATATTGATGATTTTCTTTTGAATGGAA
131 TAGGCACTATAAACACATTCTTCCCATTAGGGTAAATGATATTGATGATTTTCTTTTGCAT-GAA
* * * * *
365122 AAGTTTTCTTTGCCTTATTTTCCTTAAAATAAAAGCTCAT-CCATTAATGAGGCAAACATTGATT
195 ATGTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCCCATTAATAAGGCAAGCATTGATT
* * *
365186 CTCGGAATAGCCTCCATTCTTTTCAAGATTGGGAACCAAAAACCCATTCCCTTTAATAGGATACT
260 CTCGGAACAGCCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCAATAGGATACT
* * * *
365251 TGACATTGATGCTTTGGTCGCGCAAGAAAAGCTTTTCTTTCAACCATTTTGGTTACAATCAAAGT
325 TGACATTGATGCTTTGGTCTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGTTAGAATCAAAGT
* * * * *
365316 TTGTCTATTAAATAAAACAAACAAGAATAGTCACACTATTCCTTATTCTTTTCAAGATTAGGCAC
390 TTGTCTCTTAAATAAGACAAACAAGAATAGTCATACTAATCCCTATTCTTTTCAAGATTAGGCAC
365381 CATAAACATAGTCTACTTATA
455 CATAAACATAGTCTACTTATA
* * *
365402 AGGATACATGATATTGACGCTTTGGTTTCACAAAAAAGGCTTTCTTCCCACCAATTTTTGTAAAG
1 AGGATACACGATATTGACGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAATG
* *
365467 TCTAAGTTCGTGCCTCAAAGGAGACAAACATGGATTCTAGTAATGATCGTCATTCATTTTGTGAT
66 TCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGAT
* * *
365532 TAGGCACTATAAACACATTCTTCCCATTAGGGTAAATAATAGTGATGATTTTCTTTTGCGTGAAA
131 TAGGCACTATAAACACATTCTTCCCATTAGGGTAAATGATATTGATGATTTTCTTTTGCATG-AA
365597 ATGTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCCCATTAATAAGGCAAGCATTGATT
195 ATGTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCCCATTAATAAGGCAAGCATTGATT
* *
365662 CTCGGAAGAGCCTCCATTCTTTTCAAGATTGGGAACCAAAAACACAATCCCTTCAATAGGATACT
260 CTCGGAACAGCCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCAATAGGATACT
* *
365727 TGACATTGATACTTTGGTCTTGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGTTAGAATCAAAGT
325 TGACATTGATGCTTTGGTCTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGTTAGAATCAAAGT
* * * *
365792 TTGCCTCTTAAATAAGACAAATAAGAATAGTCATACTAAT-CCTCATTCTTTTCACGATTAGGAA
390 TTGTCTCTTAAATAAGACAAACAAGAATAGTCATACTAATCCCT-ATTCTTTTCAAGATTAGGCA
*
365856 CCATCAACATAGTCTACTTATA
454 CCATAAACATAGTCTACTTATA
* * * *
365878 AGGATCCACGATATTGAAGCTTTGGTTCCACAAGAAAGGCTTTCTTCCCACCAATTTTTGCAATG
1 AGGATACACGATATTGACGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAATG
* *
365943 TCTAACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTTATTCATTTTGTGAT
66 TCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGAT
* *
366008 TAGGCAATATAAACACATTCTTCCCATTAGGGTAAATGATATTGATGATTTTCTTTTGCGTGAAA
131 TAGGCACTATAAACACATTCTTCCCATTAGGGTAAATGATATTGATGATTTTCTTTTGCATG-AA
* *
366073 ATGTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGCTCATCCCATTAATAAGGCAAACATTGATT
195 ATGTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCCCATTAATAAGGCAAGCATTGATT
* * *
366138 CTCGGAAGAGCCTCCATTCTTTTTAAGATTGGGAACCAAAAACACAATCCCTTCAATAGGATACT
260 CTCGGAACAGCCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCAATAGGATACT
*
366203 TGACATTGATACTTTGGTCTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGTTAGAATCAAAGT
325 TGACATTGATGCTTTGGTCTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGTTAGAATCAAAGT
* * *
366268 TTG-CGTCTTAAATAAGACAAATAAGAATTGTCATACTAAT-CCTCATTCTTTTCACGATTAGGC
390 TTGTC-TCTTAAATAAGACAAACAAGAATAGTCATACTAATCCCT-ATTCTTTTCAAGATTAGGC
*
366331 ACCATCAACATAGTCTACTTATA
453 ACCATAAACATAGTCTACTTATA
* ** * *
366354 AGGATACACGATATTGGCGCTTTGGTTTTGCAAGAAAGGTTTTCTTCCCACCAATTTTTATAATG
1 AGGATACACGATATTGACGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAATG
* * * * *
366419 TCTAAGTTTGTACCTCATATGAGACCAACATGGATTCTAGTAATGATCGTCATTCATTTTGTGAT
66 TCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGAT
* * * *
366484 TAGGCAGTATAAACACATTCTTCCCATTAGGGTAAATAATAGTGATGATTTTCTTTTGCGTGAAA
131 TAGGCACTATAAACACATTCTTCCCATTAGGGTAAATGATATTGATGATTTTCTTTTGCATG-AA
366549 ATGTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCCCATTAATAAGGCAAGCATTGATT
195 ATGTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCCCATTAATAAGGCAAGCATTGATT
* *
366614 CTCGGAAGAGCCTCCATTCTTTTCAAGATTGGGAACCAAAAACACAATCCCTTCAATAGGATACT
260 CTCGGAACAGCCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCAATAGGATACT
*
366679 TGACATTGATACTTTGGTCTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGTTAGAATCAAAGT
325 TGACATTGATGCTTTGGTCTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGTTAGAATCAAAGT
* * *
366744 TTGCCTCTTAAATAAGACAAATAAGAATAGTCATACTAAT-CCTCATTCTTTTCATGATTAGGCA
390 TTGTCTCTTAAATAAGACAAACAAGAATAGTCATACTAATCCCT-ATTCTTTTCAAGATTAGGCA
366808 CCAT-AACATAGTCTACTTATA
454 CCATAAACATAGTCTACTTATA
* * * *
366829 AGGATACACGATATTGACGCTTTGGTTCCACAGGAAAGGCTTTCTTCCCACTAATTTTTGCAATG
1 AGGATACACGATATTGACGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAATG
* *
366894 TCTAACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTTATTCATTTTGTGAT
66 TCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGAT
* *
366959 TAGGCAATATAAACACATTCTTCCCATTAGGGTAAATGATATTGATGATTTTCTTTTGCGTGAGA
131 TAGGCACTATAAACACATTCTTCCCATTAGGGTAAATGATATTGATGATTTTCTTTTGCATGA-A
367024 ATGTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCCCATTAATAAGGCAAGCATTGATT
195 ATGTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCCCATTAATAAGGCAAGCATTGATT
* * *
367089 CTCGGAAGAGCCTCCATTCTTTTCAAGATTGGGAACCAAAAGCACAATCCCTTCAATAGGATACT
260 CTCGGAACAGCCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCAATAGGATACT
* * * *
367154 TGACATTGATACTTTAGTCTCGCAAGAACAGGTTTTCTTTCAACCGTTTTTGTTAGAATCAAAGT
325 TGACATTGATGCTTTGGTCTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGTTAGAATCAAAGT
* *
367219 TTG-CGTCTTAAATAAGACAAATAAGAATAGTCATACTAAT-CCTCATTCTTTTCACGATTAGGC
390 TTGTC-TCTTAAATAAGACAAACAAGAATAGTCATACTAATCCCT-ATTCTTTTCAAGATTAGGC
*
367282 ACCATCAACATAGTCTACTTATA
453 ACCATAAACATAGTCTACTTATA
* * *
367305 AGGATACACGATATTGACGCTTTGGTTCCACAAGAAAGGCTTTCTTGCCACCAATTTTTGCAATG
1 AGGATACACGATATTGACGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAATG
* * *
367370 TCTAACTTCGTGCCTCAAATGAGACAAACATTGATTCTAGTAATGATCTTTATTCATTTTGTGAT
66 TCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGAT
* *
367435 TAGGCAATATAAACACATTCTTCCCATTAGGGTAAATGATATTGATGATTTTCTTTTGCGTGAAA
131 TAGGCACTATAAACACATTCTTCCCATTAGGGTAAATGATATTGATGATTTTCTTTTGCATG-AA
* *
367500 ATGTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGCTCATCCCATTAATAAGGCAAACATTGATT
195 ATGTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCCCATTAATAAGGCAAGCATTGATT
* * *
367565 CTCGGAAGAGCCTCCATTCTTTTCAGGATTGGGAACCAAAAACACAATCCCTTCAATAGGATACT
260 CTCGGAACAGCCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCAATAGGATACT
*
367630 TGACATTGATACTTTGGTCTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGTTAGAATCAAAGT
325 TGACATTGATGCTTTGGTCTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGTTAGAATCAAAGT
* *
367695 TTG-CATCTTAAATAAGACAAATAAGAATAGTCATACTAAT-CCTCATTCTTTTCACGATTAGGC
390 TTGTC-TCTTAAATAAGACAAACAAGAATAGTCATACTAATCCCT-ATTCTTTTCAAGATTAGGC
*
367758 ACCATCAACATAGTCTACTTATA
453 ACCATAAACATAGTCTACTTATA
* ** * * *
367781 AGGATACACGATATTGGCGCTTTGGTTTTGCAAGAAAGGTTTTTTTCCCACCAATTTTTATAATG
1 AGGATACACGATATTGACGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAATG
* * * * *
367846 TCTAAGTTTGTACCTCATATGAGACCAACATGGATTCTAGTAATGATCGTCATTCATTTTGTGAT
66 TCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGAT
* * *
367911 TAGGCAGTATAAACACATTCTTCCCATTAGGGTAAATAATATTGATGATTTTCTTTTGCGTGAAA
131 TAGGCACTATAAACACATTCTTCCCATTAGGGTAAATGATATTGATGATTTTCTTTTGCATG-AA
*
367976 ATGTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCAT-CCATTACTAAGGCAAGCATTGATT
195 ATGTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCCCATTAATAAGGCAAGCATTGATT
* * *
368040 CTCGAAAGAGCCTCCATTCTTTTCAAGATTGGGAACCAAAAACACAATCCCTTCAATAGGATACT
260 CTCGGAACAGCCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCAATAGGATACT
*
368105 TGACATTGATACTTTGGTCTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGTTAGAATCAAAGT
325 TGACATTGATGCTTTGGTCTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGTTAGAATCAAAGT
* * *
368170 TTGCCTCTTAAATAAGACAAATAAGAATAGTCATACTAAT-CCTCATTCTTTTCATGATTAGGCA
390 TTGTCTCTTAAATAAGACAAACAAGAATAGTCATACTAATCCCT-ATTCTTTTCAAGATTAGGCA
368234 CCAT-AACATAGTCTACTTATA
454 CCATAAACATAGTCTACTTATA
* * *
368255 AGGATACACGATATTGAAGCTTTGGTTCCACAAGAAAGGCTTTCTTCCCACCAATTTTTGCAATG
1 AGGATACACGATATTGACGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAATG
* *
368320 TCTAACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTTATTCATTTTGTGAT
66 TCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGAT
* *
368385 TAGGCAATATAAACACATTCTTCCCATTAGGGTAAATGATATTGATGATTTTCTTTTGCGTGAAA
131 TAGGCACTATAAACACATTCTTCCCATTAGGGTAAATGATATTGATGATTTTCTTTTGCATG-AA
* * *
368450 AAGTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGCTCATCCCATTAATAAGGCAAACATTGATT
195 ATGTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCCCATTAATAAGGCAAGCATTGATT
* *
368515 CTCGGAAGAGCCTCCATTCTTTTCAAGATTGGGAACCAAAAACACAATCCCTTCAATAGGATACT
260 CTCGGAACAGCCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCAATAGGATACT
* *
368580 TGACATTGATACTTTGGTCTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGTTAGAATAAAAGT
325 TGACATTGATGCTTTGGTCTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGTTAGAATCAAAGT
* *
368645 TTG-CGTCTTAAATAAGACAAATAAGAATAGTCATACTAAT-CCTCATTCTTTTCACGATTAGGC
390 TTGTC-TCTTAAATAAGACAAACAAGAATAGTCATACTAATCCCT-ATTCTTTTCAAGATTAGGC
*
368708 ACCATCAACATAGTCTACTTATA
453 ACCATAAACATAGTCTACTTATA
* ** * *
368731 AGGATACACGATATTGGCGCTTTGGTTTTGCAAGAAAGGTTTTCTTCCCACCAATTTTTATAATG
1 AGGATACACGATATTGACGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAATG
* * * * *
368796 TCTAAGTTTGTACCTCATATGAGACCAACATGGATTCTAGTAATGATCGTCATTCATTTTGTGAT
66 TCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGAT
* * * *
368861 TAGGCAGTATAAACACATTCTTCCCATTAGGGTAAATAATAGTGATGATTTTCTTTTGCGTGAAA
131 TAGGCACTATAAACACATTCTTCCCATTAGGGTAAATGATATTGATGATTTTCTTTTGCATG-AA
368926 ATGTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCCCATTAATAAGGCAAGCATTGATT
195 ATGTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCCCATTAATAAGGCAAGCATTGATT
* *
368991 CTCGGAAGAGCCTCCATTCTTTTCAAGATTGGGAACCAAAAACACAATCCCTTCAATAGGATACT
260 CTCGGAACAGCCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCAATAGGATACT
*
369056 TGACATTGATACTTTGGTCTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGTTAGAATCAAAGT
325 TGACATTGATGCTTTGGTCTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGTTAGAATCAAAGT
* * *
369121 TTGCCTCTTAAATAAGACAAATAAGAATAGTCATACTAAT-CCTCATTCTTTTCATGATTAGGCA
390 TTGTCTCTTAAATAAGACAAACAAGAATAGTCATACTAATCCCT-ATTCTTTTCAAGATTAGGCA
369185 CCAT-AACATAGTCTACTTATA
454 CCATAAACATAGTCTACTTATA
* * *
369206 AGGATACACGATATTGACGCTTTGGTTCCACAAGAAAGGCTTTCTTCCCACTAATTTTTGCAATG
1 AGGATACACGATATTGACGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAATG
* *
369271 TCTAACTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTTATTCATTTTGTGAT
66 TCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGAT
* *
369336 TAGGCAATATAAACACATTCTTCCCATTAGGGTAAATGATATTGATGATTTTCTTTTGCGTGAGA
131 TAGGCACTATAAACACATTCTTCCCATTAGGGTAAATGATATTGATGATTTTCTTTTGCATGA-A
369401 ATGTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCCCATTAATAAGGCAAGCATTGATT
195 ATGTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCCCATTAATAAGGCAAGCATTGATT
* * *
369466 CTCGGAAGAGCCTCCATTCTTTTCAAGATTGGGAACCAAAAGCACAATCCCTTCAATAGGATACT
260 CTCGGAACAGCCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCAATAGGATACT
* * * * *
369531 TGACATTGATACTTTAGTCTCGCAAGAACAGGTTTTGTTTCAACCGTTTTTGTTAGAATCAAAGT
325 TGACATTGATGCTTTGGTCTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGTTAGAATCAAAGT
* * *
369596 TTG-CGTCTTAAATAAGACAAATAAAAATAGTCATACTAAT-CCTCATTCTTTTCACGATTAGGC
390 TTGTC-TCTTAAATAAGACAAACAAGAATAGTCATACTAATCCCT-ATTCTTTTCAAGATTAGGC
*
369659 ACCATCAACATAGTCTACTTATA
453 ACCATAAACATAGTCTACTTATA
* * *
369682 AGGATACACGATATTGACGCTTTGGTTCCACAAGAAAGGCTTTCTTGCCACCAATTTTTGCAATG
1 AGGATACACGATATTGACGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAATG
* * *
369747 TCTAACTTCGTGCCTCAAATGAGACAAACATTGATTCTAGTAATGATCTTTATTCATTTTGTGAT
66 TCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGAT
* *
369812 TAGGCAATATAAACACATTCTCCCCATTAGGGTAAATGATATTGATGATTTTCTTTTGCATGGAA
131 TAGGCACTATAAACACATTCTTCCCATTAGGGTAAATGATATTGATGATTTTCTTTTGCAT-GAA
369877 ATGTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCAT-CCATTAATAAGGCAAGCATTGATT
195 ATGTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCCCATTAATAAGGCAAGCATTGATT
* * *
369941 CTTGGAACAACCTCCATTCTTTTCAAGATTGGGAACCAAAAAGC-CCTTCCCTTCAATAGGATAC
260 CTCGGAACAGCCTCCATTCTTTTCAAGATTGGGAACCAAAAA-CACATTCCCTTCAATAGGATAC
* * *
370005 TTGACATTGATGCTTTGATCGCGCAAGAAAAGCTTTTCTTTCAACCGTTTTGGTTAGAATCAAAG
324 TTGACATTGATGCTTTGGTCTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGTTAGAATCAAAG
* * * * *
370070 TTTGTCTATTAAATAAGACAAACAACAATAGTCACACTATTCCATATTCTTTTCAAGATTAGGCA
389 TTTGTCTCTTAAATAAGACAAACAAGAATAGTCATACTAATCCCTATTCTTTTCAAGATTAGGCA
* *
370135 CCATAAACGTAGTCTACTTAAA
454 CCATAAACATAGTCTACTTATA
* * * *
370157 AGGATACACGATATTGATGCTTTGGTTTCACAAAAAAGGCTTTATTCCCACCAATTTTTGTAAAG
1 AGGATACACGATATTGACGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAATG
* * *
370222 TCTAAGTTCGTGCCTCAAAGGAGACAAACATGGATTCTTGTAATGATCATCATTCATTTTGTGAT
66 TCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGAT
* * * *
370287 TAGGCACTATAAACACATTCTTCCCATTAGGGTAAATAATAGTGATGATTTTCTTTTACGTGAAA
131 TAGGCACTATAAACACATTCTTCCCATTAGGGTAAATGATATTGATGATTTTCTTTTGCATG-AA
370352 ATGTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCCCATTAATAAGGCAAGCATTGA-T
195 ATGTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCCCATTAATAAGGCAAGCATTGATT
* *
370416 -TCGGAAGAGCCTCCATTCTTTTCAAGATTGGGAACCAAAAACACAATCCCTTCAATAGGATACT
260 CTCGGAACAGCCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCAATAGGATACT
* * *
370480 TGACATTGATACTTTGGTCACGCAAGAAAAGCTTTTCTTTCAACCGTTTTGGTTAGAATCAAAGT
325 TGACATTGATGCTTTGGTCTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGTTAGAATCAAAGT
* * * *
370545 TTGTCTCTTAAATAAGAGAAACAAGAATAGTCACACTATTCCATATTCTTTTCAAGATTAGGCAC
390 TTGTCTCTTAAATAAGACAAACAAGAATAGTCATACTAATCCCTATTCTTTTCAAGATTAGGCAC
**
370610 CATAAATGTAGTCTACTTATA
455 CATAAACATAGTCTACTTATA
* *
370631 AGGATACACGATATTGACGCTTTGGTTTCACAAAAAAGGCTTTCTTCCCACCAATTTTTGTAAAG
1 AGGATACACGATATTGACGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAATG
* *
370696 TCTAAGTTCGTGCCTCAAAGGAGACAAACATGGATTCTAGTAATGATCATCATTCATTTTGTGAT
66 TCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGAT
* * * *
370761 TAGGCAGTATAAACACATTCTTCCCATTAGGGTAAATAATAGTGATGATTTTCTTTTGTATGAAA
131 TAGGCACTATAAACACATTCTTCCCATTAGGGTAAATGATATTGATGATTTTCTTTTGCATGAAA
*
370826 CTGTTTTCTTTACCTTATTTTCCTTAAAATCAAAGTTCATCCCATTAATAAGGCAAGCATTGA-T
196 -TGTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCCCATTAATAAGGCAAGCATTGATT
* * *
370890 -TCGGAAAAGCCTCCTTTCTTTTCAAGATTGGGAACCAAAAACACAATCCCTTCAATAGGATACT
260 CTCGGAACAGCCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCAATAGGATACT
*
370954 TGACATTGATACTTTGGTCTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGTTAGAATCAAAGT
325 TGACATTGATGCTTTGGTCTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGTTAGAATCAAAGT
* * * *
371019 TTG-CGTCTTAAATAAGACAAATAAGAATAGTCGTACTAATCCTTATTCTTTTCACGATTAGGCA
390 TTGTC-TCTTAAATAAGACAAACAAGAATAGTCATACTAATCCCTATTCTTTTCAAGATTAGGCA
*
371083 CCATCAACATAGTCTACTTATA
454 CCATAAACATAGTCTACTTATA
* ** * *
371105 AGGATACACGATATTGGCGCTTTGGTTTTGCAAGAAAGGTTTTCTTCCCACCAATTTTTATAATG
1 AGGATACACGATATTGACGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAATG
* * * *
371170 TCTAAGTTCGTACCTCATATGAGACCAACATGGATTCTAGTAATGATCGTCATTCATTTTGTGAT
66 TCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGAT
* * * * * *
371235 TAGGTAGTATAAACACATTCTTCCCATTAGGGTAAAT-AGTAGTGATGATATTCTTTGGCGTGAA
131 TAGGCACTATAAACACATTCTTCCCATTAGGGTAAATGA-TATTGATGATTTTCTTTTGCATG-A
371299 AATGTTTTCTTTGCCTTATTTTCCTT-AAATCAAAGTTCATCCCATTAATAAGGCAAGCATTGAT
194 AATGTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCCCATTAATAAGGCAAGCATTGAT
* *
371363 TCTTGGAACAGCCTCCATTCTTTTCAAGATTGGGAACCAAAAAGC-CCTTCCCTTCAATAGGATA
259 TCTCGGAACAGCCTCCATTCTTTTCAAGATTGGGAACCAAAAA-CACATTCCCTTCAATAGGATA
* * *
371427 CTTGACATTGATGCTTTGGTCGCGCAAGAAAAGC-TTTCTTTCAACCGTTTTGGTTAGAATTAAA
323 CTTGACATTGATGCTTTGGTCTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGTTAGAATCAAA
* * * *
371491 GTTTGTCTCTTAAATAAGACAAAAAAGAATAGTCACACTATTCCATATTCTTTTCAAGATTAGGC
388 GTTTGTCTCTTAAATAAGACAAACAAGAATAGTCATACTAATCCCTATTCTTTTCAAGATTAGGC
*
371556 ACCATAAACGTAGTCTACTTATA
453 ACCATAAACATAGTCTACTTATA
* *
371579 AGGATACACGATATTGACGCTTTGGTTTCACAAAAAAGGCTTTCTTCCCACCAATTTTTGTAAAG
1 AGGATACACGATATTGACGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAATG
* * *
371644 TCTAAGTTCGTGCCTCAAAGGAGACAAACATGGATTCTAGTAATGATCATCATTCATTTTGCGAT
66 TCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGAT
* * *
371709 TAGGCACTATAAACACATTCTTCCCATTAGGGTAAATAATAGTGATGATTTTCTTTTGCGTGAAA
131 TAGGCACTATAAACACATTCTTCCCATTAGGGTAAATGATATTGATGATTTTCTTTTGCATG-AA
*
371774 ATGTTTTCTTTGTCTTATTTTCCTTAAAATCAAAGTTCATCCCATTAATAAGGCAAGCATTGATT
195 ATGTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCCCATTAATAAGGCAAGCATTGATT
* *
371839 CTCGGAATAGCCTCCATTCTTTTCAAGATTGGGAACCAAAAACACAATCCCTTCAATAGGATACT
260 CTCGGAACAGCCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCAATAGGATACT
* * *
371904 TGACATTGATACTTTGGTCGCGCAAGAAAAGCTTTTCTTTCAACCGTTTTGGTTAGAATCAAAGT
325 TGACATTGATGCTTTGGTCTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGTTAGAATCAAAGT
* * *
371969 TTGTCTCTTAAATAAGACAAACAAGAATAGTCACACTATTCCATATTCTTTTCAAGATTAGGCAC
390 TTGTCTCTTAAATAAGACAAACAAGAATAGTCATACTAATCCCTATTCTTTTCAAGATTAGGCAC
*
372034 CATAAACGTAGTCTACTTATA
455 CATAAACATAGTCTACTTATA
* *
372055 AGGATACACGATATTGACGCTTTGGTTTCACAAAAAAGGCTTTCTTCCCACCAATTTTTGTAAAG
1 AGGATACACGATATTGACGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAATG
* *
372120 TCTAAGTTCGTGCCTCAAAGGAGACAAACATGGATTCTAGTAATGATCATCATTCATTTTGTGAT
66 TCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGAT
* * *
372185 TAGGCACTATAAACACATTCTTCCCATTAGGGTAAATAATAGTGATGATTTTCTTTTGCGTGAAA
131 TAGGCACTATAAACACATTCTTCCCATTAGGGTAAATGATATTGATGATTTTCTTTTGCATG-AA
372250 ATGTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCCCATTAATAAGGCAAGCATTGATT
195 ATGTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCCCATTAATAAGGCAAGCATTGATT
* *
372315 CTTGGAACAGCCTCCATTCTTTTCAAGATTGGGAACCAAAAAGC-CCTTCCCTTCAATAGGATAC
260 CTCGGAACAGCCTCCATTCTTTTCAAGATTGGGAACCAAAAA-CACATTCCCTTCAATAGGATAC
* * *
372379 TTGACATTGATGCTTTGGTCGCACAAGAAAAGCTTTTCTTTCAACCGTTTTGGTTAGAATCAAAG
324 TTGACATTGATGCTTTGGTCTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGTTAGAATCAAAG
* * *
372444 TTTGTCTCTTAAATAAGACAAACAAGAATAGTCACACTATTCCATATTCTTTTCAAGATTAGGCA
389 TTTGTCTCTTAAATAAGACAAACAAGAATAGTCATACTAATCCCTATTCTTTTCAAGATTAGGCA
*
372509 CCATAAACGTAGTCTACTTATA
454 CCATAAACATAGTCTACTTATA
* *
372531 AGGATACACGATATTGACGCTTTGGTTTCACAAAAAAGGCTTTCTTCCCACCAATTTTTGTAAAG
1 AGGATACACGATATTGACGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAATG
* * *
372596 TCTAAGTTCGTGTCTCAAAAGAGACAAACATGGATTCTAGTAATGATCATCATTCATTTTGTGAT
66 TCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGAT
* * *
372661 TAGGCACTATAAACACATTCTTCCCATTAGGGTAAATAATAGTGATGATTTTCTTTTGCGTGAAA
131 TAGGCACTATAAACACATTCTTCCCATTAGGGTAAATGATATTGATGATTTTCTTTTGCATG-AA
372726 ATGTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCCCATTAATAAGGCAAGCATTGATT
195 ATGTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCCCATTAATAAGGCAAGCATTGATT
* *
372791 CTCGGAAGAGCCTCCATTCTTTTCAAGATTGGGAACCAAAAACACAATCCCTTCAATAGGATACT
260 CTCGGAACAGCCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCAATAGGATACT
*
372856 TGACATTGATACTTTGGTCTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGTTAGAATCAAAGT
325 TGACATTGATGCTTTGGTCTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGTTAGAATCAAAGT
* * *
372921 TTGCCTCTTAAATAAGACAAATAAGAATAGTCATACTAAT-CCTCATTCTTTTCACGATTAGGCA
390 TTGTCTCTTAAATAAGACAAACAAGAATAGTCATACTAATCCCT-ATTCTTTTCAAGATTAGGCA
372985 CCATAAACATAGTCTACTTATA
454 CCATAAACATAGTCTACTTATA
* * * *
373007 AGGATACACGATATTGACGCTCTGGTTCCACAAGAAAGGCTTTCTTCCCCCCAATTTTTGCAATG
1 AGGATACACGATATTGACGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAATG
* * *
373072 TCTAACTTCGTGGCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTTATTCATTTTGTGAT
66 TCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGAT
* * *
373137 TAGGCAATATAAACGCATTCTCCCCATTAGGGTAAATGATATTGATGATTTTCTTTTGCATGGAA
131 TAGGCACTATAAACACATTCTTCCCATTAGGGTAAATGATATTGATGATTTTCTTTTGCAT-GAA
* *
373202 ATGTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCAT-CTATTAATAAGGCAAACATTGATT
195 ATGTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCCCATTAATAAGGCAAGCATTGATT
* * *
373266 CTTGGAACAGCCTCCATTCTTTTCAAGATTAGGAACCAAAAACCCATTCCCTTCAATAGGATACT
260 CTCGGAACAGCCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCAATAGGATACT
* *
373331 TGACATTGATGCTTTGGTCGCGCAAGAAAAGCTTTTCTTTCAACCGTTTTGGTTAGAATCAAAGT
325 TGACATTGATGCTTTGGTCTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGTTAGAATCAAAGT
* *
373396 TTGTCTCTTAAATAAGACAAACAAGAATAGTTATACTATTCCCTATTCTTTTCAAGATT
390 TTGTCTCTTAAATAAGACAAACAAGAATAGTCATACTAATCCCTATTCTTTTCAAGATT
373455 GGGAACCAAA
Statistics
Matches: 13611, Mismatches: 1371, Indels: 352
0.89 0.09 0.02
Matches are distributed among these distances:
458 3 0.00
459 1 0.00
460 261 0.02
461 117 0.01
466 8 0.00
467 73 0.01
468 379 0.03
469 328 0.02
470 11 0.00
471 2 0.00
472 3 0.00
473 283 0.02
474 1994 0.15
475 3857 0.28
476 5456 0.40
477 331 0.02
478 358 0.03
479 1 0.00
480 126 0.01
481 19 0.00
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.35
Consensus pattern (475 bp):
AGGATACACGATATTGACGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAATG
TCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGAT
TAGGCACTATAAACACATTCTTCCCATTAGGGTAAATGATATTGATGATTTTCTTTTGCATGAAA
TGTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCCCATTAATAAGGCAAGCATTGATTC
TCGGAACAGCCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCAATAGGATACTT
GACATTGATGCTTTGGTCTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGTTAGAATCAAAGTT
TGTCTCTTAAATAAGACAAACAAGAATAGTCATACTAATCCCTATTCTTTTCAAGATTAGGCACC
ATAAACATAGTCTACTTATA
Found at i:375170 original size:475 final size:475
Alignment explanation
Indices: 373435--376899 Score: 4312
Period size: 475 Copynumber: 7.3 Consensus size: 475
373425 GTTATACTAT
* * * *
373435 TCCCTATTCTTTTCAAGATTGGGAACCAAAAGCACAATCCCTTCAATAGGATACTTGACATTGAT
1 TCCC-ATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGAT
* * *
373500 GCTTTGGTCTCGCAAGAAAAGCTTTTCTTTCAATCGTTTTTGTTAGAATCAAAGTTTGTCTCTTA
65 GCTTTGGTATCGCAAGAAAAGCTTTTCTTTCAACCGTTTTGGTTAGAATCAAAGTTTGTCTCTTA
* *
373565 AATAAGACAAATAAGAATAGTCATACTAATCCTCATTCTTTTCACGATTAGGCACCATAAACATA
130 AATAAGACAAATAAGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATA
* *
373630 GTCTTCTCATAAGGATACACGATATTGACGCTTTGGTTTTGCAAGAAAGGTTTTCTTCCCACCAA
195 GTCTTCTCATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAA
* * *
373695 TTTTTATAATGTCTAAGTTCGTACCTCATATGAGACCAACATGGATTCTAGTAATGATCTTCATT
260 TTTTTATAATGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATT
* * * *
373760 CATTTTGTGATTAGGCGCTATAAACACATTCTCCTCC-TTAGGATTAATGATATTTATGATTTTA
325 CATTTTGTGATTAGGCACTATAAACACATTCTCC-CCATTAGGATAAATGATATTGATGATTTTC
* * * * * * * * *
373824 TTTTACGTGAAAAATCTTTTCTTTGCCCTATTTTCTTTAAAATCAAAATTCA-CCGC-TTAAGTT
389 TTTCACATG-GAAATGTTTCCTTTGCCATATTTTCCTTAAAATCAAAATTCATCC-CACTAA-TA
* * **
373887 TGACAAGCATCAATTCTCGGAACAG
451 AGGCAAGCATTGATTCTCGGAACAG
* * * * *
373912 TCTCCATTCTTTTCAAGTTTGGGAACCAATAACACATTCCCTTGATTAGGATACAAGGCATTGAT
1 TC-CCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGAT
* * *
373977 GCTTTGGTATC-CAAAGAAAAGCTTTTCTTTCGACCACTTTT-GTTAGATTCAAAGTTTGTCTCT
65 GCTTTGGTATCGC-AAGAAAAGCTTTTCTTTCAACC-GTTTTGGTTAGAATCAAAGTTTGTCTCT
* * * * * *
374040 TTAATAAGACGAACATGAATAGTCATACTAA-CCCCTATTCTTTTTAGGATTAGGCACCACAAAC
128 TAAATAAGACAAATAAGAATAGTCATACTAATCCCC-ATTCTTTTCAGGATTAGGCACCATAAAC
* * * * * *
374104 ATAGTCTTCACCTAAGGATACAAGATATTGACGCTTTGGTTTCGCAAAAAATGCTTTCTTCCTAC
192 ATAGTCTTCTCATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCAC
** * * ** * * * *
374169 CAATTTTTGCAAAGTCTAAGTGCGTGCCTTGAATAAGTCAAACATGGATTCTAGCACTGATCTTC
257 CAATTTTTATAATGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTC
* * ** ** **
374234 ATTCATTTTGTGATTAGGCACTACAAACAAATTAACCTTATTACTATAAATGATATTGATGATTT
322 ATTCATTTTGTGATTAGGCACTATAAACACATTCTCCCCATTAGGATAAATGATATTGATGATTT
* ** * * * * *
374299 TATTTTGCAAGGAAATGTTTCCTTTGCCCTATTTTTCTTAAAATCAAAGTTCAT-CC-CTAAAAA
387 TCTTTCACATGGAAATGTTTCCTTTGCCATATTTTCCTTAAAATCAAAATTCATCCCACT-AATA
* *
374362 AGGCAAGCATTGATTTTCGCAACAG
451 AGGCAAGCATTGATTCTCGGAACAG
* * * *
374387 TCCTCATTCTTCTCAAGATTGGGAACCAAAAACATATTCCATTCATTAGGATACTTGACATTGAT
1 TCC-CATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGAT
* ** * * * * * * *
374452 GCTTTGGGATCATAAGAAAAGCTATTCTTTCCACCGTTTTTGATAGAAT-TAATTTTGTCTCTAA
65 GCTTTGGTATCGCAAGAAAAGCTTTTCTTTCAACCGTTTTGGTTAGAATCAAAGTTTGTCTCTTA
* ** * * *
374516 AATAAGACAAACATTAATAGTCATACTAATCCCTATTCTTTTCTGGATTAGGCACCATAAATATA
130 AATAAGACAAATAAGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATA
* ** * * * *
374581 GTCTACAAATAAGGGTACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTGTCTTCACACCAA
195 GTCTTCTCATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAA
*
374646 TTTTTATAATGTCTAAATTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATT
260 TTTTTATAATGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATT
* * * * *
374711 CCTTTTGTGATTAGGCACTATAAACAGATTCTCCCCATTAGGGTAAATGATGTTGATGATGTTCT
325 CATTTTGTGATTAGGCACTATAAACACATTCTCCCCATTAGGATAAATGATATTGATGATTTTCT
* *
374776 TTCGCATGGAAATGTTTCCTTTGCCATATTTTCCTTAAAATCAACATTCATCCCACTAATAAGGC
390 TTCACATGGAAATGTTTCCTTTGCCATATTTTCCTTAAAATCAAAATTCATCCCACTAATAAGGC
* * *
374841 AAGCGTTGATTCTAGTAACAG
455 AAGCATTGATTCTCGGAACAG
* * *
374862 TCCCATTCTTCTCAAGATTGGGAACCAAAAACATATTCCCTTCTTTAGGATACATGACATTGATG
1 TCCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATG
* *
374927 CTTTGGTCTCGCAAGAACAGCTTTTCTTTCAACCGTTTTGGTTAGAATCAAAGTTTGTCTCTTAA
66 CTTTGGTATCGCAAGAAAAGCTTTTCTTTCAACCGTTTTGGTTAGAATCAAAGTTTGTCTCTTAA
*
374992 ATAATACAAATAAGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAG
131 ATAAGACAAATAAGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAG
* *
375057 TCTTCTCATAAGGATACACGATATTGACGCTTTGGTTTTGCAAGAAAGGCTTTCTTCCCACCACT
196 TCTTCTCATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAAT
*
375122 TTTTATAATGTCTAAATTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTC
261 TTTTATAATGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTC
* * * * *
375187 CTTTTGTGATTAGGCACTATAAACAGATTCTCCCCATTAGGGTAAATGATGTTGATGATGTTCTT
326 ATTTTGTGATTAGGCACTATAAACACATTCTCCCCATTAGGATAAATGATATTGATGATTTTCTT
* *
375252 TCGCATGGAAATGTTTCCTTTGCCATATTTTCCTTAAAATCAACATTCATCCCACTAATAAGGCA
391 TCACATGGAAATGTTTCCTTTGCCATATTTTCCTTAAAATCAAAATTCATCCCACTAATAAGGCA
* * *
375317 AGCGTTGATTCTAGTAACAG
456 AGCATTGATTCTCGGAACAG
* * *
375337 TCCCATTCTTCTCAAGATTGGGAACCAAAAACATATTCCCTTCTTTAGGATACATGACATTGATG
1 TCCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATG
* *
375402 CTTTGGTCTCGCAAGAACAGCTTTTCTTTCAACCGTTTTGGTTAGAATCAAAGTTTGTCTCTTAA
66 CTTTGGTATCGCAAGAAAAGCTTTTCTTTCAACCGTTTTGGTTAGAATCAAAGTTTGTCTCTTAA
*
375467 ATAATACAAATAAGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAG
131 ATAAGACAAATAAGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAG
* *
375532 TCTTCTCATAAGGATACACGATATTGACGCTTTGGTTTTGCAAGAAAGGCTTTCTTCCCACCACT
196 TCTTCTCATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAAT
* * *
375597 TTTTATAATGTCTATGTTCGGGCCTCATAA-GAGACCAACATGGATTCTAGTAATGATCTTCATT
261 TTTTATAATGTCTAAGTTCGTGCCTCA-AATGAGACAAACATGGATTCTAGTAATGATCTTCATT
* *
375661 CATTTTGTGATTAGGCACTATAAACACATTCTCCTCC-TTAGGATTAATGATATTGACGATTTTC
325 CATTTTGTGATTAGGCACTATAAACACATTCTCC-CCATTAGGATAAATGATATTGATGATTTTC
** * * * *
375725 TTTCATGTGAAAAT-TTT--TTTGCCCTATTTTCTTTAAAATCAAAATTCA--CCACTTAAGTAT
389 TTTCACATGGAAATGTTTCCTTTGCCATATTTTCCTTAAAATCAAAATTCATCCCAC-TAA-TAA
* * *
375785 GACAAGCATCGATTCTCGGAATAG
452 GGCAAGCATTGATTCTCGGAACAG
* * * * *
375809 CCTCCATTCTTTTCAAGATTGGGAACTAATAACACATTCCCTTGATTAGGATACAAGACATTGAT
1 TC-CCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGAT
* * *
375874 GCTTTGGTGTCGAAAGAAAAGATTTTCTTTCAACCGCTTTT-GTTAGAATCAAAGTTTGTCTCTT
65 GCTTTGGTATCGCAAGAAAAGCTTTTCTTTCAACCG-TTTTGGTTAGAATCAAAGTTTGTCTCTT
* * * * * *
375938 TAATAAGACGAACATGAATAGTCATACTAATCCTCATTCTTTTCCA-GATTGGGCACCATAAACA
129 AAATAAGACAAATAAGAATAGTCATACTAATCCCCATTCTTTT-CAGGATTAGGCACCATAAACA
* * * * *
376002 TGGTCTACAT-ATAAGGATACATGATATTGATGCTTTGGTTTCGCAAG-AA-GTTTGTCTTCCCA
193 TAGTCTTC-TCATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTT-TCTTCCCA
* * *
376064 CTAATTTTTATAATGTCTAAATTCGTGCCTCAAATAAGACAAACATGGATTCTAGTAATGATCTT
256 CCAATTTTTATAATGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTT
* *
376129 CATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGGTAAATGATATTGATGATT
321 CATTCATTTTGTGATTAGGCACTATAAACACATTCTCCCCATTAGGATAAATGATATTGATGATT
* ** *
376194 TT-TTTCCACATGGAAATGTTTCCTTTGCCATATTTTCCTTCAAATCAACGTTCATCCCATTAAT
386 TTCTTT-CACATGGAAATGTTTCCTTTGCCATATTTTCCTTAAAATCAAAATTCATCCCACTAAT
*
376258 AAGGCAAGCATTGATTCTTGGAACAG
450 AAGGCAAGCATTGATTCTCGGAACAG
** * * * *
376284 -CCTCTATTC-TTAAAAGATTGGGAACCAAAATCACATTCCCTTCAATAGGACACTTGACATTGA
1 TCC-C-ATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGA
* * * * * *
376347 TGGTTTGCTTTCGCAAGAAGAGCTTTTCTTTCAACCATTTTGGTTAGAATCAAATTTTGTCTCTT
64 TGCTTTGGTATCGCAAGAAAAGCTTTTCTTTCAACCGTTTTGGTTAGAATCAAAGTTTGTCTCTT
* * *
376412 AAATACGAGAAATAAGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCTTAAACAT
129 AAATAAGACAAATAAGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACAT
* *
376477 AGTCTTCTCATAAGGATACACGATATTGACGTTTTGGTTTCGCAAGAAAAGCTTTCTTCCCACCA
194 AGTCTTCTCATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCA
* ** * * *
376542 ATTTTTATAATGTCTATGTTCGTGCCTCATTTTAGACCAACATGGATTCCA-TCAATGATCTTCA
259 ATTTTTATAATGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGT-AATGATCTTCA
* * *
376606 TTCATTTTGTGATTAGGCGCTATAAACACATTCTCCTCC-TTAGGATTAATGACATTGATGATTT
323 TTCATTTTGTGATTAGGCACTATAAACACATTCTCC-CCATTAGGATAAATGATATTGATGATTT
* * * ** * * * *
376670 TCTTTCACGTGAAAATCTTTTTTTTGCCTTATTTTCTTTAAAATCAAAATTTA-CCGC-TTAAAT
387 TCTTTCACATGGAAATGTTTCCTTTGCCATATTTTCCTTAAAATCAAAATTCATCC-CACT-AAT
* * ** * * *
376733 ATGACAAGCATCAATTCTCGTACCAA
450 AAGGCAAGCATTGATTCTCGGAACAG
* * * *
376759 TCTCCATTCTTTTCAAGATTGGGAACTAATAACAAATTCCCTT-AGTTAGGATACTTGACATTGA
1 TC-CCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCA-TTAGGATACATGACATTGA
*
376823 TGCTTTAGG-ATCGCAAGAAAAGCTATTT-TTTCAACCGTTTTTGG-TAGAATCGAAGTTTGTCT
64 TGCTTT-GGTATCGCAAGAAAAGCT-TTTCTTTCAACCG-TTTTGGTTAGAATCAAAGTTTGTCT
376885 CTTAAATAAGACAAA
126 CTTAAATAAGACAAA
376900 CATGAATGTG
Statistics
Matches: 2605, Mismatches: 333, Indels: 101
0.86 0.11 0.03
Matches are distributed among these distances:
470 4 0.00
471 12 0.00
472 183 0.07
473 215 0.08
474 578 0.22
475 1107 0.42
476 160 0.06
477 340 0.13
478 6 0.00
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.36
Consensus pattern (475 bp):
TCCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATG
CTTTGGTATCGCAAGAAAAGCTTTTCTTTCAACCGTTTTGGTTAGAATCAAAGTTTGTCTCTTAA
ATAAGACAAATAAGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAG
TCTTCTCATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAAT
TTTTATAATGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTC
ATTTTGTGATTAGGCACTATAAACACATTCTCCCCATTAGGATAAATGATATTGATGATTTTCTT
TCACATGGAAATGTTTCCTTTGCCATATTTTCCTTAAAATCAAAATTCATCCCACTAATAAGGCA
AGCATTGATTCTCGGAACAG
Found at i:378305 original size:158 final size:157
Alignment explanation
Indices: 377170--380689 Score: 631
Period size: 158 Copynumber: 22.3 Consensus size: 157
377160 TAGTGGGAAG
* * *
377170 AAAGCCTTTCCTT-CGAAACCAAAGCGTCAATAT-AGTGTATCCTTATGAGAAGACTATGTTTAT
1 AAAG-CTTTTCTTGCGAAACCAAAGCATCAATATCA-TGTATCCTAATGAGAAGACTATGTTTAT
* *
377233 GGTGCCTACTCCTGAAAAGAATGGGGATTAGTATGACTATTCAAGTTTGTCTTACTTAAGAGACA
64 GGTGCCTAATCCTGAAAAGAAT-GGGATTAGTATGACTATTCATGTTTGTCTTA-TTAAGAGACA
* *
377298 AACTTTGATTCTAACCAAAATGGTTGAAAGA
127 AACTTTGATTCTATCAAAAATGGTTGAAAGA
* * * * * * *
377329 AAAGCTTTCCTTGCGACACCAAAACATCAA-GTCATGTATCCTAAT-A-AAGGGAATGTGTTTTT
1 AAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAA--GACTATGTTTAT
* * * * * * * * * * * * * * * *
377391 GGTTCCCAATCTTGTAATGAATAGAGACTATTACGA-GAATCAATGCTTGCCTTGTTTACGAGAT
64 GGTGCCTAATCCTGAAAAGAAT-GGGATTAGTATGACTATTC-ATGTTTGTCTT-ATTAAGAGAC
* ** * **
377455 GAACTTCAATTTTAAGAAAAATCGG--GCAAA-A
126 AAACTTTGATTCTATCAAAAAT-GGTTG-AAAGA
* * * * ** * * * * * * * *
377486 AAAACATTTCCGTGCAAAAGAAAATCATCAATATCATTTACCCTAATGGGGAGAATGTGTTTATA
1 AAAGC-TTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATG
* * * ** * * *
377551 GTGCCTAATCAC--AAAATGAATGAAGATCATTACT-AAAATCCATGTTTGTCTCATT-TGAGGC
65 GTGCCTAATC-CTGAAAA-GAATG-GGATTAGTA-TGACTATTCATGTTTGTCTTATTAAGA-G-
* * ** **
377612 ACAAACTTAGACAT-TAT-AAAAATTGGCAGGGAG-
124 ACAAACTTTGA-TTCTATCAAAAA-TGGTTGAAAGA
* ** * * * *
377645 AAAGCCTTTCTTATGAAACCAAAGCGTCAATATCGTGTATCCTTATGAGAAGACTATGCTTATGG
1 AAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGG
* *
377710 TGCCTACA-CCTGAAAAGAATGGGGATTAGAATGACTCTTCA-GTTTGTCTTACTTAAGAGACAA
66 TGCCTA-ATCCTGAAAAGAAT-GGGATTAGTATGACTATTCATGTTTGTCTTA-TTAAGAGACAA
* * * *
377773 ACTTTGATTCTAACCAAAACGATTGAAAGA
128 ACTTTGATTCTATCAAAAATGGTTGAAAGA
* * * * * * *
377803 AAAGCTTTGCTTGCGACACCAAAGCATGC-----CATGTATCTTAATGA-AGGGAATGTGTTTTT
1 AAAGCTTTTCTTGCGAAACCAAAGCAT-CAATATCATGTATCCTAATGAGA-AGACTATGTTTAT
* * * * ** * * * * **
377862 GGTTCCCAAACTTCCAAAGAATGGAGATT-GTTATGA-GAATCAAAGCTTACCTTATTTATAG-G
64 GGTGCCTAATCCTGAAAAGAATGG-GATTAG-TATGACTATTC-ATGTTTGTCTTA-TTA-AGAG
* * * *
377924 ATGAAA-GTTGATTTTAAGC-AAAATAGG--GCACAAG-
124 A-CAAACTTTGATTCT-ATCAAAAAT-GGTTG-A-AAGA
* * ** * * * * * *
377958 AAA-CATTTTCATGCAAAAAAAAATCATCAATATAAT-TCATCATAATGAGGAGAATGTGTTTAT
1 AAAGC-TTTTCTTGCGAAACCAAAGCATCAATATCATGT-ATCCTAATGAGAAGACTATGTTTAT
* * * * * * * *
378021 AGTGCCTAATCAC-AAAAATGAATGATGATCATTACTAGA--ATCCATGTTTGTCTCATT-TGAG
64 GGTGCCTAATC-CTGAAAA-GAATG-GGATTAGTA-T-GACTATTCATGTTTGTCTTATTAAGA-
* * * * * * *
378082 GCACGAACGTAGACAT-TAT-AAAACTTGGTGGGAAG-
123 G-ACAAACTTTGA-TTCTATCAAAA-ATGGTTGAAAGA
* * * *
378117 AAAGCCTTTCTTGC-AAATCCAAGGCATCAATATCATGTATCCTTATGAGAAGACTATGTTTATA
1 AAAGCTTTTCTTGCGAAA-CCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATG
378181 GTGCCTAATCCTGAAAAGAATAGGGATTAGTATGACTATTCATGTTTGTCTTATTAAGAGACAAA
65 GTGCCTAATCCTGAAAAGAAT-GGGATTAGTATGACTATTCATGTTTGTCTTATTAAGAGACAAA
378246 CTTTGATTCTATCAAAAATGGTTGAAAGA
129 CTTTGATTCTATCAAAAATGGTTGAAAGA
* * * * * * *
378275 AAAGCTTTTCTTGCGACACTAAAGCATCAATGTTA-GCTATCCTAAT-A-AAGGGATTGTGTTTT
1 AAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATG-TATCCTAATGAGAA--GACTATGTTTA
* * * * ** * * * ** * *
378337 TGGTTCCCAATCTTCAAAAGAATGGAGATT-GTTAT-AAGAATCAAAGCTTACCTTATTTATGGG
63 TGGTGCCTAATCCTGAAAAGAATGG-GATTAG-TATGACTATTC-ATGTTTGTCTTA-TTAAGAG
* * * *
378400 ATGAAA--GTGATTTTA-AACAAAATAGG--GCACAAG-
124 A-CAAACTTTGATTCTATCA-AAAAT-GGTTG-A-AAGA
* * * ** * * * * *
378433 AAA-CATTTCCATGCAAAAGAAAATCATCCATATCATTTACCCTAATCG-GGAGA--ATGGTTTA
1 AAAGC-TTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAAT-GAGAAGACTAT-GTTTA
* * * * * * * *
378494 TAGTGCCTAA-CC--ACAA-AAT-GGATGAAAATCATTACTGGAATCTATGTTTGTCTCATT-TG
63 TGGTGCCTAATCCTGAAAAGAATGGGAT--TAGT-ATGACT--ATTC-ATGTTTGTCTTATTAAG
* * * * *
378553 AGGTAAAAACTTAGACAT-TAT-AAAAATTGGTGGGAAG-
122 A-G-ACAAACTTTGA-TTCTATCAAAAA-TGGTTGAAAGA
* * * *
378590 AAAGCATTTCTTGCGAAACCAAAGCATCAATATCGTGCATCCTTATGAGAAGACTATGTTTATGG
1 AAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGG
** * * *
378655 TGCCTAATAATGAAAAGAATGGGGATTAGTATGATTGTTCCTGTTTGTCTTATTAAAGAGACAAA
66 TGCCTAATCCTGAAAAGAAT-GGGATTAGTATGACTATTCATGTTTGTCTTATT-AAGAGACAAA
*
378720 CTTTGATTCTATCAAAAACGGTTGAAAGA
129 CTTTGATTCTATCAAAAATGGTTGAAAGA
* * * * * * *
378749 AAAGCTTTTCTTAC-AACACTAAAGCATCAATGTCATGTATCCTAACGA-AGGGAATATGTTTTT
1 AAAGCTTTTCTTGCGAA-ACCAAAGCATCAATATCATGTATCCTAATGAGA-AGACTATGTTTAT
* ** ** * * * * * *
378812 GGTTCCTAAT-CTAGAAAAGAATGGAGATTTTTGCGA-GAATCGATGCTTATCATATTTAAGGGA
64 GGTGCCTAATCCT-GAAAAGAATGG-GATTAGTATGACTATTC-ATGTTTGTCTTA-TTAAGAGA
** * * * ** *
378875 TGAATTTTAATTTTAAGAAAAATAGG--GCAAAGG
125 CAAACTTTGATTCTATCAAAAAT-GGTTG-AAAGA
* * ** * * * * * * *
378908 AAA-CATTTCCATGC-AAAAGAATATCATCAATATCATATA-CTGTAATAAGGAGAATGTGTTTA
1 AAAGC-TTTTCTTGCGAAACCAA-AGCATCAATATCATGTATC-CTAATGAGAAGACTATGTTTA
** ** ** * * * **
378970 TACTGCCTAATAAT-AAAATGAATAAAGATCACTACTAGA--ATCCATGTTTGTCAGATTAA-AG
63 TGGTGCCTAATCCTGAAAA-GAAT-GGGATTAGTA-T-GACTATTCATGTTTGTCTTATTAAGAG
* * * * *
379031 GCATGAACTTAGA--CTATAAAAAAATTGGTGGGAAGA
124 ACA--AACTTTGATTCTAT-CAAAAA-TGGTTGAAAGA
* * * * * *
379067 AAAAC-TTTCTTGCCAAATCAAAGCGTCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGG
1 AAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGG
* * * *
379131 TGCCTAATCCTGAAAAGAGTAGGGATTTGTATGACTATTCATGTTTGTCTTATTGAATAGCCAAA
66 TGCCTAATCCTGAAAAGAAT-GGGATTAGTATGACTATTCATGTTTGTCTTATT-AAGAGACAAA
* **
379196 CTTTGATTATATCAAAAACAGTTGAAAGA
129 CTTTGATTCTATCAAAAATGGTTGAAAGA
* * * * * *
379225 AAAGCTTTTCTTCCGACACCAAAGCATCAATGTCATGTATCCTAATGA-AGGGATTATGTTTTTG
1 AAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGA-AGACTATGTTTATG
* * * * * * * * * * * *
379289 GTTCCCAGTCATGAGAAGAATGGACATT-GTTACGA-GAATCAATGCTTGCCTTATTTAAGAGAT
65 GTGCCTAATCCTGAAAAGAATGG-GATTAG-TATGACTATTC-ATGTTTGTCTTA-TTAAGAGAC
* * **
379352 GAACTTTGATTTTAAGAAAAATAGG--GCAAAGGA
126 AAACTTTGATTCTATCAAAAAT-GGTTG-AAA-GA
* * * ** * * * * * * *
379385 AAA--TTTCCATGCAAAAGAAAATCATCAATATCATTTACCCTAATAAGGAGAATATGTTTATAG
1 AAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGG
* * * * * * *
379448 TGCCTAATCAC--AAAATGAATGAAGATCATTACTAGA--ATTGATGTTTATCTCATT-TGAGGC
66 TGCCTAATC-CTGAAAA-GAATG-GGATTAGTA-T-GACTATTCATGTTTGTCTTATTAAGA-G-
* * *
379508 ACAAAC-TT-AGTCATTAT-AAAAATTGG-GGAGACG-
124 ACAAACTTTGATTC--TATCAAAAA-TGGTTGA-AAGA
* * ** ** * * * *
379541 AAAGCCTTTATTATGAAACCAAAGTGTCAAAATCCTGTATCGTTATGAGAAGACTATGTTTATGG
1 AAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGG
** * * * * * *
379606 TGCCTAATAATGAAAAAAATGGGGATTAGTATCACTATTCGTGCTTATCTTATTTAAGATACAAA
66 TGCCTAATCCTGAAAAGAAT-GGGATTAGTATGACTATTCATGTTTGTCTTA-TTAAGAGACAAA
* *
379671 CTTTGATTTTATCAAAAACGGTTGAAAGA
129 CTTTGATTCTATCAAAAATGGTTGAAAGA
* * * * * *
379700 AAAGCTTTTCATGCGACACCAAAGCATCAATGA-CATGTATCCTAATGA-AGGGATTGTGCTCT-
1 AAAGCTTTTCTTGCGAAACCAAAGCATCAAT-ATCATGTATCCTAATGAGA-AGACTATG-TTTA
* * * * * * *
379762 TGGTTCCCAATCCTGAAAAGAATAGAGATT-GT-T-ACAAGAATCAATGCTTGTCTTATTTAAGG
63 TGGTGCCTAATCCTGAAAAGAAT-GGGATTAGTATGAC--TATTC-ATGTTTGTCTTA-TTAAGA
* * ** * * *
379824 GA-AAACTTTAATTTTAAGGAAAATAAGG--CAAAGG
123 GACAAACTTTGATTCT-ATCAAAA-ATGGTTGAAAGA
* * * ** * * * * * *
379858 AAA-CATTTCCATGCAAAATAAAATCATCAATATCATTTACCCTCATGAGGAGAAC-GTGTTTAT
1 AAAGC-TTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAG-ACTATGTTTAT
* * * * ** * * *
379921 AGTACCTAATCAC--AAATTGAATGAAGGTCATTACTA-GA--AACCATGTTTGACTTATTTAGG
64 GGTGCCTAATC-CTGAAA-AGAATG--GG--ATTAGTATGACTATTCATGTTTGTCTTATTAAGA
* * * *
379981 GCACGAACTTAGACAT-TAT-AAAAATTGG-CGATAAG-
123 G-ACAAACTTTGA-TTCTATCAAAAA-TGGTTGA-AAGA
* * * * * * * *
380016 AAAGCCTTTCTTGCAAAACTAAAGCGTCAATATCGTGTATCCTTATAAGAAGACTATATTTATGG
1 AAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGG
* *
380081 TGCCTAATCTTGAAAA-AATGGGGATTAGTATGACTATTCTTGTTTGTCTTATTTAAGAGACAAA
66 TGCCTAATCCTGAAAAGAAT-GGGATTAGTATGACTATTCATGTTTGTCTTA-TTAAGAGACAAA
*
380145 CTTTGATTCTAACAAAAATGGTTGAAAGA
129 CTTTGATTCTATCAAAAATGGTTGAAAGA
* * * * * * * * *
380174 AAAGCTTTTCTTGCGACACCACAGCATCAGTGTAATGTATCCTAATGA-AGGGATTGTGTTTTTG
1 AAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGA-AGACTATGTTTATG
* * * * * * *
380238 GTGCCCAATCTTGAAAAGAATGGAGATT-GT-T-ACAAGAATCAATGCTTGCCTTATTTACG-GC
65 GTGCCTAATCCTGAAAAGAATGG-GATTAGTATGAC--TATTC-ATGTTTGTCTTA-TTAAGAG-
* * * *** *
380299 ATAAATTTTGATTTTAAGGAAAATAGG--GCAAAGG
124 ACAAACTTTGATTCTATCAAAAAT-GGTTG-AAAGA
* * * ** * * * * * * *
380333 AAA-CATTTCCATGCAAAAGAAAATCAACAATATCATTTACCCAAAT--GAAGACAATTTGTTTG
1 AAAGC-TTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGAC--TATGTTTA
** * * * * *
380395 TAATGCCTAATCAC--AAAATGAATGAAGATCACTACTAGA--ATCCATGTTTGTCTCATTTAAG
63 TGGTGCCTAATC-CTGAAAA-GAATG-GGATTAGTA-T-GACTATTCATGTTTGTCTTA-TTAAG
** *
380456 -G-CATAAGCTTAAACAT-TAT-AAAAATTGG-TGAGAAGA
122 AGACA-AA-CTTTGA-TTCTATCAAAAA-TGGTTGA-AAGA
* * * * * * *
380492 AAA-CCTTTCTTGAGAAACCAAAGCATCAGTATCGTGTTTCCTTATGAGAAGACTATATTTATGG
1 AAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGG
** ** *
380556 TGCCTAATAATGAAAAG-A----A-T-GTATCCCTATTCATGCTTGTCTTATTTAAGAGACAAAC
66 TGCCTAATCCTGAAAAGAATGGGATTAGTATGACTATTCATGTTTGTCTTA-TTAAGAGACAAAC
380614 TTTGATTCTATCAAAAATGGTTGAAAGA
130 TTTGATTCTATCAAAAATGGTTGAAAGA
* * *
380642 AAAGCTTTTCATGCGACACCAAATCATCAATGA-CATGTATCCTAATGA
1 AAAGCTTTTCTTGCGAAACCAAAGCATCAAT-ATCATGTATCCTAATGA
380690 AGCGATTGTG
Statistics
Matches: 2341, Mismatches: 738, Indels: 572
0.64 0.20 0.16
Matches are distributed among these distances:
149 2 0.00
150 38 0.02
151 47 0.02
152 5 0.00
153 11 0.00
154 58 0.02
155 47 0.02
156 46 0.02
157 223 0.10
158 970 0.41
159 776 0.33
160 85 0.04
161 18 0.01
162 9 0.00
163 1 0.00
164 5 0.00
ACGTcount: A:0.37, C:0.15, G:0.18, T:0.31
Consensus pattern (157 bp):
AAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGG
TGCCTAATCCTGAAAAGAATGGGATTAGTATGACTATTCATGTTTGTCTTATTAAGAGACAAACT
TTGATTCTATCAAAAATGGTTGAAAGA
Found at i:379673 original size:475 final size:476
Alignment explanation
Indices: 376906--380857 Score: 4907
Period size: 475 Copynumber: 8.3 Consensus size: 476
376896 CAAACATGAA
* ** * * *
376906 TGTGTTTTTGGTTCCCAAACTTCCAAAGAATGGAGATTGTTATGAGAATCAAAGCTTACCTTATT
1 TGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCAATGCTTGCCTTATT
* ** * *
376971 TATGGGATGAAAGTTGATTTTGAGCAAAATAGGGCACAA-GAAACATTTCCATGCAAAAGAAAAT
66 TAAGGGATGAACTTTGATTTTAAGAAAAATAGGGCA-AAGGAAACATTTCCATGCAAAAGAAAAT
* * *** *
377035 CATCAATATAATTCATTATAATGAGGAGAATGTGTTTATGGTGCCTAATCACAAAAATGAATGAA
130 CATCAATATCATTTACCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCAC-AAAATGAATGAA
* * * * ***** ** *
377100 GATCTTTACTAGAATCTATGTTGGTCTCAATTGAGATGTGAACTTAGACATTATTGAAATTAGTG
194 GATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACAAACTTAGACATTATAAAAATTGGTG
*
377165 GGAAGAAAGCCTTTCCTT-CGAAACCAAAGCGTCAATATAGTGTATCCTTATGAGAAGACTATGT
259 GGAAGAAAGCCTTT-CTTACGAAACCAAAGCGTCAATATCGTGTATCCTTATGAGAAGACTATGT
* * *
377229 TTATGGTGCCTACTCCTGAAAAGAATGGGGATTAGTATGACTATTCAAGTTTGTCTTACTTAAGA
323 TTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGA
* * * * *
377294 GACAAACTTTGATTCTAACCAAAATGGTTGAAAGAAAAGCTTTCCTTGCGACACCAAAACATCAA
388 GACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAA
* *
377359 -GTCATGTATCCTAATAAAGGGAA
453 TGTCATGTATCCTAATGAAGGGAT
* * * * * *
377382 TGTGTTTTTGGTTCCCAATCTTGTAATGAATAGAGACTATTACGAGAATCAATGCTTGCCTTGTT
1 TGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCAATGCTTGCCTTATT
* * ** * ** *
377447 TACGAGATGAACTTCAATTTTAAGAAAAATCGGGCAAAAAAAACATTTCCGTGCAAAAGAAAATC
66 TAAGGGATGAACTTTGATTTTAAGAAAAATAGGGCAAAGGAAACATTTCCATGCAAAAGAAAATC
*
377512 ATCAATATCATTTACCCTAATGGGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGA
131 ATCAATATCATTTACCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGA
* *
377577 TCATTACTAAAATCCATGTTTGTCTCATTTGAGGCACAAACTTAGACATTATAAAAATTGGCAGG
196 TCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACAAACTTAGACATTATAAAAATTGG-TGG
* *
377642 G-AGAAAGCCTTTCTTATGAAACCAAAGCGTCAATATCGTGTATCCTTATGAGAAGACTATGCTT
260 GAAGAAAGCCTTTCTTACGAAACCAAAGCGTCAATATCGTGTATCCTTATGAGAAGACTATGTTT
* * *
377706 ATGGTGCCTACA-CCTGAAAAGAATGGGGATTAGAATGACTCTTCA-GTTTGTCTTACTTAAGAG
325 ATGGTGCCTA-ATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAG
* * * *
377769 ACAAACTTTGATTCTAACCAAAACGATTGAAAGAAAAGCTTTGCTTGCGACACCAAAG---C-AT
389 ACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAAT
* * *
377830 GCCATGTATCTTAATGAAGGGAA
454 GTCATGTATCCTAATGAAGGGAT
* ** * * *
377853 TGTGTTTTTGGTTCCCAAACTTCCAAAGAATGGAGATTGTTATGAGAATCAAAGCTTACCTTATT
1 TGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCAATGCTTGCCTTATT
** * * *
377918 TATA-GGATGAAAGTTGATTTTAAGCAAAATAGGGCACAA-GAAACATTTTCATGCAAAAAAAAA
66 TA-AGGGATGAACTTTGATTTTAAGAAAAATAGGGCA-AAGGAAACATTTCCATGCAAAAGAAAA
* * * *
377981 TCATCAATATAATTCATCATAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAAATGAATGA
129 TCATCAATATCATTTACCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCAC-AAAATGAATGA
* * * *
378046 TGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACGTAGACATTATAAAACTTGGT
193 AGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACAAACTTAGACATTATAAAAATTGGT
* * * *
378111 GGGAAGAAAGCCTTTCTTGC-AAATCCAAGGCATCAATATCATGTATCCTTATGAGAAGACTATG
258 GGGAAGAAAGCCTTTCTTACGAAA-CCAAAGCGTCAATATCGTGTATCCTTATGAGAAGACTATG
* *
378175 TTTATAGTGCCTAATCCTGAAAAGAATAGGGATTAGTATGACTATTCATGTTTGTCTTA-TTAAG
322 TTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAG
* *
378239 AGACAAACTTTGATTCTATCAAAAATGGTTGAAAGAAAAGCTTTTCTTGCGACACTAAAGCATCA
387 AGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCA
* *
378304 ATGTTA-GCTATCCTAATAAAGGGAT
452 ATGTCATG-TATCCTAATGAAGGGAT
* ** * *
378329 TGTGTTTTTGGTTCCCAATCTTCAAAAGAATGGAGATTGTTATAAGAATCAAAGCTTACCTTATT
1 TGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCAATGCTTGCCTTATT
* **
378394 TATGGGATGAA-AGTGATTTTAA-ACAAAATAGGGCACAA-GAAACATTTCCATGCAAAAGAAAA
66 TAAGGGATGAACTTTGATTTTAAGA-AAAATAGGGCA-AAGGAAACATTTCCATGCAAAAGAAAA
* * *
378456 TCATCCATATCATTTACCCTAATCG-GGAGAATG-GTTTATAGTGCCTAACCACAAAATGGATGA
129 TCATCAATATCATTTACCCTAAT-GAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGA
* * * * *
378519 AAATCATTACTGGAATCTATGTTTGTCTCATTTGAGGTAAAAACTTAGACATTATAAAAATTGGT
193 AGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACAAACTTAGACATTATAAAAATTGGT
* * * *
378584 GGGAAGAAAGCATTTCTTGCGAAACCAAAGCATCAATATCGTGCATCCTTATGAGAAGACTATGT
258 GGGAAGAAAGCCTTTCTTACGAAACCAAAGCGTCAATATCGTGTATCCTTATGAGAAGACTATGT
** * * * *
378649 TTATGGTGCCTAATAATGAAAAGAATGGGGATTAGTATGATTGTTCCTGTTTGTCTTATTAAAGA
323 TTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGA
* * *
378714 GACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAAAGCTTTTCTTACAACACTAAAGCATCAA
388 GACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAA
* *
378779 TGTCATGTATCCTAACGAAGGGAA
453 TGTCATGTATCCTAATGAAGGGAT
* * * * * * ** *
378803 TATGTTTTTGGTTCCTAATCTAGAAAAGAATGGAGATTTTTGCGAGAATCGATGCTTATCATATT
1 TGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCAATGCTTGCCTTATT
* * *
378868 TAAGGGATGAATTTTAATTTTAAGAAAAATAGGGCAAAGGAAACATTTCCATGCAAAAGAATATC
66 TAAGGGATGAACTTTGATTTTAAGAAAAATAGGGCAAAGGAAACATTTCCATGCAAAAGAAAATC
* ** * * * * *
378933 ATCAATATCATATACTGTAATAAGGAGAATGTGTTTATACTGCCTAATAATAAAATGAATAAAGA
131 ATCAATATCATTTACCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGA
* ** ** ** *
378998 TCACTACTAGAATCCATGTTTGTCAGATTAAAGGCATGAACTTAGAC-TATAAAAAAATTGGTGG
196 TCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACAAACTTAGACAT-TATAAAAATTGGTGG
** * * *
379062 GAAGAAAAACTTTCTTGCCAAATCAAAGCGTCAATATCGTGTATCCTTATGAGAAGACTATGTTT
260 GAAGAAAGCCTTTCTTACGAAACCAAAGCGTCAATATCGTGTATCCTTATGAGAAGACTATGTTT
* * * * * *
379127 ATGGTGCCTAATCCTGAAAAGAGTAGGGATTTGTATGACTATTCATGTTTGTCTTATTGAATAGC
325 ATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGA
* * *
379192 CAAACTTTGATTATATCAAAAACAGTTGAAAGAAAAGCTTTTCTTCCGACACCAAAGCATCAATG
390 CAAACTTTGATTCTATCAAAAACGGTTGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATG
379257 TCATGTATCCTAATGAAGGGAT
455 TCATGTATCCTAATGAAGGGAT
* * * * *
379279 TATGTTTTTGGTTCCCAGTCATGAGAAGAATGGACATTGTTACGAGAATCAATGCTTGCCTTATT
1 TGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCAATGCTTGCCTTATT
*
379344 TAAGAGATGAACTTTGATTTTAAGAAAAATAGGGCAAAGGAAA-ATTTCCATGCAAAAGAAAATC
66 TAAGGGATGAACTTTGATTTTAAGAAAAATAGGGCAAAGGAAACATTTCCATGCAAAAGAAAATC
* *
379408 ATCAATATCATTTACCCTAATAAGGAGAATATGTTTATAGTGCCTAATCACAAAATGAATGAAGA
131 ATCAATATCATTTACCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGA
** * *
379473 TCATTACTAGAATTGATGTTTATCTCATTTGAGGCACAAACTTAGTCATTATAAAAATTGG-GGA
196 TCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACAAACTTAGACATTATAAAAATTGGTGG-
* * * * * * *
379537 GACGAAAGCCTTTATTATGAAACCAAAGTGTCAAAATCCTGTATCGTTATGAGAAGACTATGTTT
260 GAAGAAAGCCTTTCTTACGAAACCAAAGCGTCAATATCGTGTATCCTTATGAGAAGACTATGTTT
** * * * * * *
379602 ATGGTGCCTAATAATGAAAAAAATGGGGATTAGTATCACTATTCGTGCTTATCTTATTTAAGATA
325 ATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGA
* *
379667 CAAACTTTGATTTTATCAAAAACGGTTGAAAGAAAAGCTTTTCATGCGACACCAAAGCATCAATG
390 CAAACTTTGATTCTATCAAAAACGGTTGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATG
*
379732 ACATGTATCCTAATGAAGGGAT
455 TCATGTATCCTAATGAAGGGAT
* * * * * *
379754 TGTGCTCTTGGTTCCCAATCCTGAAAAGAATAGAGATTGTTACAAGAATCAATGCTTGTCTTATT
1 TGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCAATGCTTGCCTTATT
* * * * *
379819 TAAGGGA-AAACTTTAATTTTAAGGAAAATAAGGCAAAGGAAACATTTCCATGCAAAATAAAATC
66 TAAGGGATGAACTTTGATTTTAAGAAAAATAGGGCAAAGGAAACATTTCCATGCAAAAGAAAATC
* * * * *
379883 ATCAATATCATTTACCCTCATGAGGAGAACGTGTTTATAGTACCTAATCACAAATTGAATGAAGG
131 ATCAATATCATTTACCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGA
* * * * * *
379948 TCATTACTAGAAACCATGTTTGACTTATTT-AGGGCACGAACTTAGACATTATAAAAATTGGCGA
196 TCATTACTAGAATCCATGTTTGTCTCATTTGA-GGCACAAACTTAGACATTATAAAAATTGGTGG
* * * * * *
380012 TAAGAAAGCCTTTCTTGCAAAACTAAAGCGTCAATATCGTGTATCCTTATAAGAAGACTATATTT
260 GAAGAAAGCCTTTCTTACGAAACCAAAGCGTCAATATCGTGTATCCTTATGAGAAGACTATGTTT
* *
380077 ATGGTGCCTAATCTTGAAAA-AATGGGGATTAGTATGACTATTCTTGTTTGTCTTATTTAAGAGA
325 ATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGA
* * * *
380141 CAAACTTTGATTCTAACAAAAATGGTTGAAAGAAAAGCTTTTCTTGCGACACCACAGCATCAGTG
390 CAAACTTTGATTCTATCAAAAACGGTTGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATG
*
380206 TAATGTATCCTAATGAAGGGAT
455 TCATGTATCCTAATGAAGGGAT
* *
380228 TGTGTTTTTGGTGCCCAATCTTGAAAAGAATGGAGATTGTTACAAGAATCAATGCTTGCCTTATT
1 TGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCAATGCTTGCCTTATT
* * * * *
380293 TACGGCATAAATTTTGATTTTAAGGAAAATAGGGCAAAGGAAACATTTCCATGCAAAAGAAAATC
66 TAAGGGATGAACTTTGATTTTAAGAAAAATAGGGCAAAGGAAACATTTCCATGCAAAAGAAAATC
* * * * * * *
380358 AACAATATCATTTACCCAAATGAAGACAATTTGTTTGTAATGCCTAATCACAAAATGAATGAAGA
131 ATCAATATCATTTACCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGA
* * * * * *
380423 TCACTACTAGAATCCATGTTTGTCTCATTTAAGGCATAAGCTTAAACATTATAAAAATTGGTGAG
196 TCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACAAACTTAGACATTATAAAAATTGGTGGG
* * * * *
380488 AAGAAAACCTTTCTTGA-GAAACCAAAGCATCAGTATCGTGTTTCCTTATGAGAAGACTATATTT
261 AAGAAAGCCTTTCTT-ACGAAACCAAAGCGTCAATATCGTGTATCCTTATGAGAAGACTATGTTT
** ** *
380552 ATGGTGCCTAATAATGAAAAG-A-----A-T-GTATCCCTATTCATGCTTGTCTTATTTAAGAGA
325 ATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGA
* * *
380609 CAAACTTTGATTCTATCAAAAATGGTTGAAAGAAAAGCTTTTCATGCGACACCAAATCATCAATG
390 CAAACTTTGATTCTATCAAAAACGGTTGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATG
* *
380674 ACATGTATCCTAATGAAGCGAT
455 TCATGTATCCTAATGAAGGGAT
* * * * *
380696 TGTG-CTTTGGTTCGCAATCTTGGAAAGAATGGAGATTGTTACGAGAATCAACGCATGCCTTATT
1 TGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCAATGCTTGCCTTATT
* * * * * * * * *
380760 AAAGGGATGAACTTCGATTATAAGGAAAATAAGGCAAAGAAAACAATACCCTGCAAAAGAAAATC
66 TAAGGGATGAACTTTGATTTTAAGAAAAATAGGGCAAAGGAAACATTTCCATGCAAAAGAAAATC
* *
380825 AGTCAATATCAATTACCCAAATGAGGAGAATGT
131 A-TCAATATCATTTACCCTAATGAGGAGAATGT
380858 CTTCTCAAGA
Statistics
Matches: 3010, Mismatches: 427, Indels: 86
0.85 0.12 0.02
Matches are distributed among these distances:
467 107 0.04
468 138 0.05
469 1 0.00
470 2 0.00
471 177 0.06
472 223 0.07
473 184 0.06
474 462 0.15
475 1108 0.37
476 608 0.20
ACGTcount: A:0.37, C:0.15, G:0.18, T:0.30
Consensus pattern (476 bp):
TGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCAATGCTTGCCTTATT
TAAGGGATGAACTTTGATTTTAAGAAAAATAGGGCAAAGGAAACATTTCCATGCAAAAGAAAATC
ATCAATATCATTTACCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGA
TCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACAAACTTAGACATTATAAAAATTGGTGGG
AAGAAAGCCTTTCTTACGAAACCAAAGCGTCAATATCGTGTATCCTTATGAGAAGACTATGTTTA
TGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGAC
AAACTTTGATTCTATCAAAAACGGTTGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGT
CATGTATCCTAATGAAGGGAT
Found at i:382065 original size:474 final size:475
Alignment explanation
Indices: 380857--382393 Score: 2040
Period size: 474 Copynumber: 3.2 Consensus size: 475
380847 GAGGAGAATG
* ** *
380857 TCTTCTCAAGATTGGGAATCAAAAACATATTCCCTTTGTTAGGATACTTGACATTGATGCTTTGG
1 TCTTCTCAAGATTGGGAACCAAAAACATATTCCCTTCATTAGGATACATGACATTGATGCTTTGG
* *
380922 GATCGTAAGAAAAGCTATTCTTTCCA-TCGTTTTTGATAGAATC-AATGTTTGTCTCTTAAATAA
66 GATCGCAAGAAAAGCTATTCTTTCAACT-GTTTTTGATAGAATCAAAT-TTTGTCTCTTAAATAA
* *
380985 GATAAACATAAATTGTCATACTAATCCCCATTCTTTTCAGGATTAGGTACCACAAACATAGTCTA
129 GACAAACATAAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGTACCACAAACATAGTCTA
* * * * *
381050 CTTATTAAGATAGGTAATATTAATGCTTTGGTTTCGCAACAAAGGCTTTCTACCCTCCAATTTTT
194 CTCATTAAGATAGATGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCTCCAATTTTT
* * *
381115 GTAAAGTCAAAGTTTCTGCCTCAAATGAGTCAAACATGGATTCTGGTAATGATCTTCATTCATTT
259 GTAAAGTCTAAGTTTGTGCCTCAAATGAGTCAAACATGGATTCTAGTAATGATCTTCATTCATTT
*
381180 CATGATTAGACACAATCAACACATTCTCC-CAAT-TAGGATAAATGATATTGATGATTTTATTTT
324 CATGATTAGACAC-ATAAACACATTCTCCTCAATAT-GGATAAATGATATTGATGATTTTATTTT
** * * *
381243 GCCTGGAAATGTTTCCTTTGCCCTATTTTCCTTAAAATCAAAGATCATCCCTTAAAAAAGGCAAG
387 G-CAAGAAATGTTTCCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCATTAAATAAGGCAAG
* *
381308 CATTGATTTTCGTAATAGTCCCCAT
451 CATTGATTCTCGTAACAGTCCCCAT
* * * *
381333 TCTTCTCAAGATTAGGAACTAAAAACATATTCCCTTTATTAGGATACTTGACATTGATGCTTTGG
1 TCTTCTCAAGATTGGGAACCAAAAACATATTCCCTTCATTAGGATACATGACATTGATGCTTTGG
* * * *
381398 GATCGCAAGAAAAGCTATTCAGTTCCACTGTATTTT-ATAGAATCAAAGTTTGTCTCCTAAATAA
66 GATCGCAAGAAAAGCTATTC-TTTCAACTGT-TTTTGATAGAATCAAATTTTGTCTCTTAAATAA
* * *
381462 GACAAACATTAATAGTCATACTAAT-CCCATTTGTTTTCAGGATTAGGTACCATAAACATAGTCT
129 GACAAACATAAATAGTCATACTAATCCCCA-TTCTTTTCAGGATTAGGTACCACAAACATAGTCT
* * *
381526 ACTCATTAAGATAGACGATATTGATGCTTTGGTTTCGCAATAAAGGCTTTCTTCCCTCTAATTTT
193 ACTCATTAAGATAGATGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCTCCAATTTT
* * *
381591 TGTAAAGTCTAAGTTTGTGCCTCAAATAAGAT-AAACTTGGATTCTAGTAATGATCATCATTCAT
258 TGTAAAGTCTAAGTTTGTGCCTCAAATGAG-TCAAACATGGATTCTAGTAATGATCTTCATTCAT
** * * *
381655 TTTGTGATTAGGCACTATAAACACATTCTCCTCACTATGG-TAAATGATATTGATGATTTTCTTT
322 TTCATGATTAGACAC-ATAAACACATTCTCCTCAATATGGATAAATGATATTGATGATTTTATTT
* * *
381719 TGCAAAAAATGTTTCCTTTGTCCTATTTTCCTTAAAATTAAAGTTCATCCATTAAATAAGGCAAG
386 TGCAAGAAATGTTTCCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCATTAAATAAGGCAAG
*
381784 CATTGATTCTCGCAACAGT-CCCAT
451 CATTGATTCTCGTAACAGTCCCCAT
*
381808 TCTTCTTAAGATTGGGAACCAAAAACATATTCCCTTCATTAGGATACATGACATTGATGCTTTGG
1 TCTTCTCAAGATTGGGAACCAAAAACATATTCCCTTCATTAGGATACATGACATTGATGCTTTGG
* * * * * *
381873 TG-TCACAAGAAATGCTTTTCTTTTAACTGTTTTTGTTAGAATCAAATTTTGTCTCTTTAATAAG
66 -GATCGCAAGAAAAGCTATTCTTTCAACTGTTTTTGATAGAATCAAATTTTGTCTCTTAAATAAG
* * * * * *
381937 ACAAATATGAATAGTCGTACTAATCCCCATTCTTTTCAAGATTAGGCACCACAAACATAGTCTTC
130 ACAAACATAAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGTACCACAAACATAGTCTAC
* * * * *
382002 TCA-TAAGGATACATGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTTTTCTCTCCAATTTTT
195 TCATTAA-GATAGATGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCTCCAATTTTT
* * ** * **
382066 GCAAAGTCTATGTTTGCACCTCAAATGAGTCAAACACGGATTCTAGTAACAATCTTCATTCATTT
259 GTAAAGTCTAAGTTTGTGCCTCAAATGAGTCAAACATGGATTCTAGTAATGATCTTCATTCATTT
* *
382131 CATGATTAGACACAGTAAACACATTCTCCTCATTA-GGATAAATGATATTGAT-AATTTATTTTG
324 CATGATTAGACACA-TAAACACATTCTCCTCAATATGGATAAATGATATTGATGATTTTATTTTG
* * *
382194 CATTGAAATGTTTCCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCTATTAAATAAGGTAAGC
388 CA-AGAAATGTTTCCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCATTAAATAAGGCAAGC
* *
382259 ATTGATTCTCATAACAGTCCCCAC
452 ATTGATTCTCGTAACAGTCCCCAT
* *
382283 TCTTCTCAAGATTGGGAACCAAAAACATATTCCCTTCTTTAGGATACAAGACATTGATGCTTTGG
1 TCTTCTCAAGATTGGGAACCAAAAACATATTCCCTTCATTAGGATACATGACATTGATGCTTTGG
* * * * *
382348 TG-TCGCAAGAAAAGCTTTTCTTTTAGCCGTTTTTGTTAGAATCAAA
66 -GATCGCAAGAAAAGCTATTCTTTCAACTGTTTTTGATAGAATCAAA
382394 ATTAGTCTTG
Statistics
Matches: 937, Mismatches: 107, Indels: 35
0.87 0.10 0.03
Matches are distributed among these distances:
473 22 0.02
474 305 0.33
475 192 0.20
476 156 0.17
477 248 0.26
478 13 0.01
479 1 0.00
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.36
Consensus pattern (475 bp):
TCTTCTCAAGATTGGGAACCAAAAACATATTCCCTTCATTAGGATACATGACATTGATGCTTTGG
GATCGCAAGAAAAGCTATTCTTTCAACTGTTTTTGATAGAATCAAATTTTGTCTCTTAAATAAGA
CAAACATAAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGTACCACAAACATAGTCTACT
CATTAAGATAGATGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCTCCAATTTTTGT
AAAGTCTAAGTTTGTGCCTCAAATGAGTCAAACATGGATTCTAGTAATGATCTTCATTCATTTCA
TGATTAGACACATAAACACATTCTCCTCAATATGGATAAATGATATTGATGATTTTATTTTGCAA
GAAATGTTTCCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCATTAAATAAGGCAAGCATTG
ATTCTCGTAACAGTCCCCAT
Found at i:385753 original size:13 final size:13
Alignment explanation
Indices: 385735--385759 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
385725 ATAATCCCCC
385735 TGTATCGATACAG
1 TGTATCGATACAG
385748 TGTATCGATACA
1 TGTATCGATACA
385760 ATAGAAAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAG
Found at i:389714 original size:21 final size:21
Alignment explanation
Indices: 389685--389729 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 21
389675 AAGTTTTTAT
*
389685 TTTTCTTAGCTAA-TTCATTA
1 TTTTCTTAGCCAAGTTCATTA
*
389705 TTTTCATTAGCCAAGTTCTTTA
1 TTTTC-TTAGCCAAGTTCATTA
389727 TTT
1 TTT
389730 CAACTTGCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 7 0.33
22 9 0.43
ACGTcount: A:0.22, C:0.16, G:0.07, T:0.56
Consensus pattern (21 bp):
TTTTCTTAGCCAAGTTCATTA
Found at i:389729 original size:22 final size:21
Alignment explanation
Indices: 389674--389729 Score: 62
Period size: 21 Copynumber: 2.7 Consensus size: 21
389664 ATGAATCATG
389674 CAAGTT-TTTATTTTTCTTAGC
1 CAAGTTCTTTA-TTTTCTTAGC
* *
389695 TAA-TTCATTATTTTCATTAGC
1 CAAGTTCTTTATTTTC-TTAGC
389716 CAAGTTCTTTATTT
1 CAAGTTCTTTATTT
389730 CAACTTGCAA
Statistics
Matches: 28, Mismatches: 4, Indels: 5
0.76 0.11 0.14
Matches are distributed among these distances:
20 7 0.25
21 12 0.43
22 9 0.32
ACGTcount: A:0.23, C:0.14, G:0.07, T:0.55
Consensus pattern (21 bp):
CAAGTTCTTTATTTTCTTAGC
Found at i:391966 original size:13 final size:13
Alignment explanation
Indices: 391948--391973 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
391938 AATTTTTTGG
391948 TGTATCGATACAT
1 TGTATCGATACAT
391961 TGTATCGATACAT
1 TGTATCGATACAT
391974 ATTTGGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:391984 original size:32 final size:34
Alignment explanation
Indices: 391927--391991 Score: 107
Period size: 32 Copynumber: 2.0 Consensus size: 34
391917 TACAAGCCAA
*
391927 TGTATCGATACAATTTTTTGGTGTATCGATACAT
1 TGTATCGATACAATTATTTGGTGTATCGATACAT
391961 TGTATCGATAC-A-TATTTGGTGTATCGATACA
1 TGTATCGATACAATTATTTGGTGTATCGATACA
391992 AGTTTGGCTA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
32 18 0.60
33 1 0.03
34 11 0.37
ACGTcount: A:0.28, C:0.12, G:0.18, T:0.42
Consensus pattern (34 bp):
TGTATCGATACAATTATTTGGTGTATCGATACAT
Found at i:393473 original size:475 final size:475
Alignment explanation
Indices: 392357--395526 Score: 4133
Period size: 475 Copynumber: 6.7 Consensus size: 475
392347 ATCCTAACAA
* * * * * * *
392357 GTCTCTTCAATAAGACAAAAATGAATAGTTAGAC--ATCCCGATTCTTTTCAAGATTAGGCACCA
1 GTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGTACCA
* * * * *
392420 CAAACACAGTCTTCACATAAGGATACATGATATTGACGCTTTGGTTTCACAAGAAAGGCTTTCTT
66 TAAACATAGTCTTCTCATAAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTT
*
392485 CCCTCCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGTCAAACGTGGATTCTAGTAATGA
131 CCCTCCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGTCAAACATGGATTCTAGTAATGA
* * *
392550 TCTTCATTCATTTCATGATTAGACACAATAAATACTTTCTCCTCATTAGGATAAATGATATTGAC
196 TCTTCATTCATTTCATGATTAGACACAATAAACACATTCTCCTCATTAGGATAAATGATATTGAT
* * *
392615 GATTTTATTTTGCAAGGAAATGTTTCCTCTGCCTTATTTTCCTTAAAATCAAAGTTCATCCCTTA
261 GATTTTATTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTA
* * * * *
392680 AAAAAGGGAAGCATTGATTTTCGTAACAGTCTCGATTCTTCTCAAGATTGGGAACCAAAAACATA
326 AATAAGGCAAGCATTGATTCTCGTAACAGTCCCTATTCTTCTCAAGATTGGGAACCAAAAACATA
* * * *
392745 TTCCCTTTATTAGGATACTTGACACTGATGCTTTGGGATCGCAAGAAAAGCTATTCTTTCCACCG
391 TTCCCTTCATTAGGATACATGACATTGATGCTTTGGG-TCGCAAGAAAAGCTATTCTTTCAACCG
*
392810 TTTTTGGTAGAATCAAAGTTT
455 TTTTTGTTAGAATCAAAGTTT
392831 GTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGTACCA
1 GTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGTACCA
* ** *
392896 TAAACATAGTCTACTCATTAA-GATAGGTGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTCT
66 TAAACATAGTCTTCTCA-TAAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCT
* * ** *
392960 TCCCTCCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATAAAACATACATGGATTCTAGTAATG
130 TCCCTCCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGTCAAACATGGATTCTAGTAATG
* ** * * ** *
393025 ATCATCATTCATTTTGTCATTAGGCATTATAAACACATTATCCTCATTAGTG-TAAATGATATTG
195 ATCTTCATTCATTTCATGATTAGACACAATAAACACATTCTCCTCATTAG-GATAAATGATATTG
* * * * * **
393089 ATGATTTTCTTTTGTAGGGAAATGTTTCCTTTGCCTTATTTTCCATAAAATCAAAGTTCATCAAT
259 ATGATTTTATTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCT
* * * *
393154 TAAATAAGGCAAGCATTGATTCTCGTAATAGTCCCCATTCTTCCCAAGATTGGGAACTAAAAACA
324 TAAATAAGGCAAGCATTGATTCTCGTAACAGTCCCTATTCTTCTCAAGATTGGGAACCAAAAACA
* * * * *
393219 TATT-CCTTCATTAGGATAGAAGACATTGATGCTTTGGTGTCGTAAGAAAAGCTTTTCTTTTAAC
389 TATTCCCTTCATTAGGATACATGACATTGATGCTTTGG-GTCGCAAGAAAAGCTATTCTTTCAAC
*
393283 CGTTTTTGTTAGAATCAAAATTT
453 CGTTTTTGTTAGAATCAAAGTTT
* * * *
393306 GTCTCTTCAATAAGACAAACATAAATAGTCATATTAATCCCCATTCTTTTCAAGATTAGGTACCA
1 GTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGTACCA
* * ** **
393371 CAAACATAGTCTTCTCATAAGGATACACGATATTGACACTTTGGTTTTACAAGAAAGGCTTTCTT
66 TAAACATAGTCTTCTCATAAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTT
* * *
393436 CCCTCCAATTTTTGTAAAGTCTAAGTTTCTACCTCAAATGAGTCAAACATGGATTCTAGTAACGA
131 CCCTCCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGTCAAACATGGATTCTAGTAATGA
* ** *
393501 TCTTCATTCATTTCATGATTAGACACAATAAGCACATTCTTTTCATTACGATAAATGATATTGAT
196 TCTTCATTCATTTCATGATTAGACACAATAAACACATTCTCCTCATTAGGATAAATGATATTGAT
*
393566 GATTTTATTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCTTAAAATCAAAGTTTATCCCTT-
261 GATTTTATTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTA
* * * *
393630 AAGAAGGCAAGCATTAATTTTCGTAACAGTCCCCATTCTTCTCAAGATTGGGAACCAAAAACATA
326 AATAAGGCAAGCATTGATTCTCGTAACAGTCCCTATTCTTCTCAAGATTGGGAACCAAAAACATA
* * * * * *
393695 TTCCCTTTAGTAGGATACTTGACATTGATGCTTTAGGATCGCAAGAAAAGCTATTCGTTCCACTC
391 TTCCCTTCATTAGGATACATGACATTGATGCTTT-GGGTCGCAAGAAAAGCTATTCTTTCAAC-C
*
393760 TTTTTTG-TAGAATCAAAGTTT
454 GTTTTTGTTAGAATCAAAGTTT
* * * *
393781 GTCTCTTAAATAAGACAAACATTAATAGTCATACTAATCCCCATTGTTTTTAGGATTAGATACCA
1 GTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGTACCA
* * * * *
393846 TAAACATAGTCTACTCATTAA-GATAAACGATATCGATGCTTTGGTTTCGCAATAAAGGCTTTCT
66 TAAACATAGTCTTCTCA-TAAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCT
* * * *
393910 TCCCTCTAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATAAGACAAACATGGATTCTAGTAATG
130 TCCCTCCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGTCAAACATGGATTCTAGTAATG
* * ** * * * *
393975 ATCATCATTCTTTTTGTGATTAGGCACTATAAACACATTCTCTTCATTAGGGTAAATGATATTGA
195 ATCTTCATTCATTTCATGATTAGACACAATAAACACATTCTCCTCATTAGGATAAATGATATTGA
* * * * *
394040 TGATTTTCTTTTACA-GCGAAATGTTTCCTTTACCCTATTTTTCTTAAAATCAAAGTTCATCCAT
260 TGATTTTATTTTGCATG-GAAATGTTTCCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCT
* * * * ****
394104 TAAATAAGGCAAGCATTGATTCTTGTAACAGT-CCTATTCTTGT-AACA----CAATCTTGTAAC
324 TAAATAAGGCAAGCATTGATTCTCGTAACAGTCCCTATTCTTCTCAAGATTGGGAA-CCAAAAAC
* * *
394163 ATATTCCCTTCTTTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTTAA
388 ATATTCCCTTCATTAGGATACATGACATTGATGCTTTGG-GTCGCAAGAAAAGCTATTCTTTCAA
* *
394228 CTGTTTTTGTTAGAATCAAATTTT
452 CCGTTTTTGTTAGAATCAAAGTTT
* * * * *
394252 ATCTCTTTAATAAGACAAATATGAATAGTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCA
1 GTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGTACCA
* * * *
394317 TAAACATAGTCTTCTCATAAGGATACATGATATTTACGCTTTTGTTTCGTAAGAAAGGCATTT-T
66 TAAACATAGTCTTCTCATAAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAGGC-TTTCT
* * * * *
394381 TCCCTCTAATTTTTCTAAAGTCTAAGTTTGGGCCTCAAATGAGTCAAACATAGATTCTAGTAACG
130 TCCCTCCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGTCAAACATGGATTCTAGTAATG
* *
394446 ATCTTTATTCATTTCATGATTAGACACAATAAACGCATTCTCCTCATTAGGATAAATGATATTGA
195 ATCTTCATTCATTTCATGATTAGACACAATAAACACATTCTCCTCATTAGGATAAATGATATTGA
* * * * *
394511 TGATTTTATTTTGCATTGAAATGATTACTTTGCCCTATTTTCCTTAATATCAAAGTTCATCTCTT
260 TGATTTTATTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTT
* * * * *
394576 AAATAAGGCAAGCATTGATTCTCATAACAATCTCTATTCTTCTCATGACTGGGAACCAAAAACAC
325 AAATAAGGCAAGCATTGATTCTCGTAACAGTCCCTATTCTTCTCAAGATTGGGAACCAAAAACA-
* * * * * * *
394641 T-GTCCTTTCATTAGGGTAAATGACTTTGATGCTTTGGTGTCGTAAGAAAAGCTTTTCTTTCAAC
389 TATTCCCTTCATTAGGATACATGACATTGATGCTTTGG-GTCGCAAGAAAAGCTATTCTTTCAAC
394705 CGTTTTTGTTAGAATCAAAGTTT
453 CGTTTTTGTTAGAATCAAAGTTT
* * * *
394728 GTCTCTTTAATAAGACGAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCC
1 GTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGTACCA
* * * * * *
394793 CAAACATAGTTTTCACATAAGGATACATGATGTTGATGCTTTGGTTTCCCAAGAAAAGCTTTCTT
66 TAAACATAGTCTTCTCATAAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTT
* *
394858 CCCACCAATTTTTGTAAAGTCTAAGTTTGTGTCAT-AAATGAGTCAAACATGGATTCTAGTAATG
131 CCCTCCAATTTTTGTAAAGTCTAAGTTTGTG-CCTCAAATGAGTCAAACATGGATTCTAGTAATG
* * *
394922 ATCTTCATTCATTTCATGATTAGACATAATAAACAGATTCTCCTCATTAGGATAAATGGTATTGA
195 ATCTTCATTCATTTCATGATTAGACACAATAAACACATTCTCCTCATTAGGATAAATGATATTGA
* *
394987 TGATTTTATTTTG-ATGGAAATGTTTCCTTTGCCCTATTTTCCTTAAAACCAAAGTTCATCCCCT
260 TGATTTTATTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTT
* * * * *
395051 AAAAAAGGCAAGCATTGATTCTCGCAGCAGTCTCTATTTTTCTCAAGATTGGGAACCAAAAACAT
325 AAATAAGGCAAGCATTGATTCTCGTAACAGTCCCTATTCTTCTCAAGATTGGGAACCAAAAACAT
* * * * *
395116 ATTCCCTTCATTTGGATACTTGACATTGATGCTTTGGGATCACAAGAAAAGCTATTCTTTCTATC
390 ATTCCCTTCATTAGGATACATGACATTGATGCTTTGGG-TCGCAAGAAAAGCTATTCTTTCAACC
* *
395181 -ATTTTGATAGAATCAAAGTTT
454 GTTTTTGTTAGAATCAAAGTTT
*
395202 GTCTCTTAAATAAGACAAAC----ATAGTCATACTAATCCCTATTCTTTTCAGGATTAGGTACCA
1 GTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGTACCA
* *
395263 TAAACATAGTCTACTCATTAAGG-TAGATGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCT
66 TAAACATAGTCTTCTCA-TAAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCT
* *
395327 TCCCTCCAATTTTTGTAAAGTCTAATTTTGTGCCTTAAATGAGTC-AACTATGGATTCTAGTAAT
130 TCCCTCCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGTCAAAC-ATGGATTCTAGTAAT
* * * *
395391 GATCTTCATTCATTTCGTGACTAGACACAATGAACACATTCTCCTTATTAGGATAAATGATATTG
194 GATCTTCATTCATTTCATGATTAGACACAATAAACACATTCTCCTCATTAGGATAAATGATATTG
* * * * * *
395456 ATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATTCCT
259 ATGATTTTATTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCT
395521 TAAATA
324 TAAATA
395527 TGACAAACAT
Statistics
Matches: 2326, Mismatches: 336, Indels: 71
0.85 0.12 0.03
Matches are distributed among these distances:
469 5 0.00
470 226 0.10
471 424 0.18
472 12 0.01
473 2 0.00
474 138 0.06
475 846 0.36
476 664 0.29
477 9 0.00
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.36
Consensus pattern (475 bp):
GTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGTACCA
TAAACATAGTCTTCTCATAAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTT
CCCTCCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGTCAAACATGGATTCTAGTAATGA
TCTTCATTCATTTCATGATTAGACACAATAAACACATTCTCCTCATTAGGATAAATGATATTGAT
GATTTTATTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTA
AATAAGGCAAGCATTGATTCTCGTAACAGTCCCTATTCTTCTCAAGATTGGGAACCAAAAACATA
TTCCCTTCATTAGGATACATGACATTGATGCTTTGGGTCGCAAGAAAAGCTATTCTTTCAACCGT
TTTTGTTAGAATCAAAGTTT
Found at i:394713 original size:946 final size:941
Alignment explanation
Indices: 392357--395526 Score: 4290
Period size: 946 Copynumber: 3.3 Consensus size: 941
392347 ATCCTAACAA
* * *
392357 GTCTCTTCAATAAGACAAAAATGAATAGTTAGAC--ATCCCGATTCTTTTCAAGATTAGGCACCA
1 GTCTCTTCAATAAGAC-AAAATGAATAGTCATACTAATCCCCATTCTTTTCAAGATTAGGCACCA
* *
392420 CAAACACAGTCTTCACATAAGGATACATGATATTGACGCTTTGGTTTCACAAGAAAGGCTTTCTT
65 CAAACATAGTCTTCTCATAAGGATACATGATATTGACGCTTTGGTTTCACAAGAAAGGCTTTCTT
* *
392485 CCCTCCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGTCAAACGTGGATTCTAGTAATGA
130 CCCTCCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGTCAAACATGGATTCTAGTAACGA
* * *
392550 TCTTCATTCATTTCATGATTAGACACAATAAATACTTTCTCCTCATTAGGATAAATGATATTGAC
195 TCTTCATTCATTTCATGATTAGACACAATAAACACATTCTCCTCATTAGGATAAATGATATTGAT
* * *
392615 GATTTTATTTTGCAAGGAAATGTTTCCTCTGCCTTATTTTCCTTAAAATCAAAGTTCATCCCTTA
260 GATTTTATTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTA
* * *
392680 AAAAAGGGAAGCATTGATTTTCGTAACAGTCTCGATTCTTCTCAAGATTGGGAACCAAAAACATA
325 AATAAGGCAAGCATTGATTTTCGTAACAGTCTCCATTCTTCTCAAGATTGGGAACCAAAAACATA
*
392745 TTCCCTTTATTAGGATACTTGACACTGATGCTTTGGGATCGCAAGAAAAGCTATTCTTTCCACCG
390 TTCCCTTTATTAGGATACTTGACATTGATGCTTTGGG-TCGCAAGAAAAGCTATTCTTTCCACCG
392810 TTTTTGGTAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCAT
454 TTTTT-GTAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCAT
**
392875 TCTTTTCAGGATTAGGTACCATAAACATAGTCTACTCATTAAGATAGGTGATATTGATGCTTTGG
518 TCTTTTCAGGATTAGGTACCATAAACATAGTCTACTCATTAAGATAAATGATATTGATGCTTTGG
*
392940 TTTCGCAACAAAGGCTTTCTTCCCTCCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATAAAAC
583 TTTCGCAACAAAGGCTTTCTTCCCTCCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATAAGAC
* * *
393005 ATACATGGATTCTAGTAATGATCATCATTCATTTTGTCATTAGGCATTATAAACACATTATCCTC
648 AAACATGGATTCTAGTAATGATCATCATTCATTTTGTGATTAGGCA-TATAAACACATTCTCCTC
* * * *
393070 ATTAGTGTAAATGATATTGATGATTTTCTTTTGTAGGGAAATGTTTCCTTTGCCTTATTTTCCAT
712 ATTAGGGTAAATGATATTGATGATTTTC-TTT-TAAGGAAATGTTTCCTTTGCCCTATTTTCCTT
* * * *
393135 AAAATCAAAGTTCATCAATTAAATAAGGCAAGCATTGATTCTCGTAATAGTCCCCATTCTTCCCA
775 AAAATCAAAGTTCATCCATTAAATAAGGCAAGCATTGATTCTCGTAACAGT-CCTATTCTT-CTA
* * * *
393200 AGATTGGGAACTAAAAACATATT-CCTTCATTAGGATAGAAGACATTGATGCTTTGGTGTCGTAA
838 AGA---GGAACTAAAAACATATTCCCTTCTTTAGGATACATGACATTGATGCTTTGGTGTCGCAA
*
393264 GAAAAGCTTTTCTTTTAACCGTTTTTGTTAGAATCAAAATTT
900 GAAAAGCTTTTCTTTTAACTGTTTTTGTTAGAATCAAAATTT
* * *
393306 GTCTCTTCAATAAGACAAACATAAATAGTCATATTAATCCCCATTCTTTTCAAGATTAGGTACCA
1 GTCTCTTCAATAAGACAAA-ATGAATAGTCATACTAATCCCCATTCTTTTCAAGATTAGGCACCA
* * *
393371 CAAACATAGTCTTCTCATAAGGATACACGATATTGACACTTTGGTTTTACAAGAAAGGCTTTCTT
65 CAAACATAGTCTTCTCATAAGGATACATGATATTGACGCTTTGGTTTCACAAGAAAGGCTTTCTT
* *
393436 CCCTCCAATTTTTGTAAAGTCTAAGTTTCTACCTCAAATGAGTCAAACATGGATTCTAGTAACGA
130 CCCTCCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGTCAAACATGGATTCTAGTAACGA
* ** *
393501 TCTTCATTCATTTCATGATTAGACACAATAAGCACATTCTTTTCATTACGATAAATGATATTGAT
195 TCTTCATTCATTTCATGATTAGACACAATAAACACATTCTCCTCATTAGGATAAATGATATTGAT
*
393566 GATTTTATTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCTTAAAATCAAAGTTTATCCCTT-
260 GATTTTATTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTA
* * *
393630 AAGAAGGCAAGCATTAATTTTCGTAACAGTCCCCATTCTTCTCAAGATTGGGAACCAAAAACATA
325 AATAAGGCAAGCATTGATTTTCGTAACAGTCTCCATTCTTCTCAAGATTGGGAACCAAAAACATA
* * *
393695 TTCCCTTTAGTAGGATACTTGACATTGATGCTTTAGGATCGCAAGAAAAGCTATTCGTTCCACTC
390 TTCCCTTTATTAGGATACTTGACATTGATGCTTT-GGGTCGCAAGAAAAGCTATTCTTTCCAC-C
* *
393760 TTTTTTGTAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATTAATAGTCATACTAATCCCCAT
453 GTTTTTGTAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCAT
* * * * *
393825 TGTTTTTAGGATTAGATACCATAAACATAGTCTACTCATTAAGATAAACGATATCGATGCTTTGG
518 TCTTTTCAGGATTAGGTACCATAAACATAGTCTACTCATTAAGATAAATGATATTGATGCTTTGG
* *
393890 TTTCGCAATAAAGGCTTTCTTCCCTCTAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATAAGAC
583 TTTCGCAACAAAGGCTTTCTTCCCTCCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATAAGAC
* *
393955 AAACATGGATTCTAGTAATGATCATCATTCTTTTTGTGATTAGGCACTATAAACACATTCTCTTC
648 AAACATGGATTCTAGTAATGATCATCATTCATTTTGTGATTAGGCA-TATAAACACATTCTCCTC
* *
394020 ATTAGGGTAAATGATATTGATGATTTTCTTTTACAGCGAAATGTTTCCTTTACCCTATTTTTCTT
712 ATTAGGGTAAATGATATTGATGATTTTCTTTTA-AG-GAAATGTTTCCTTTGCCCTATTTTCCTT
* * *
394085 AAAATCAAAGTTCATCCATTAAATAAGGCAAGCATTGATTCTTGTAACAGTCCTATTCTTGTAAC
775 AAAATCAAAGTTCATCCATTAAATAAGGCAAGCATTGATTCTCGTAACAGTCCTATTCTTCTAAG
* ***
394150 A-CAATCTTGTAACATATTCCCTTCTTTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAA
840 AGGAA-CTAAAAACATATTCCCTTCTTTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAA
*
394214 AGCTTTTCTTTTAACTGTTTTTGTTAGAATCAAATTTT
904 AGCTTTTCTTTTAACTGTTTTTGTTAGAATCAAAATTT
* * * *
394252 ATCTCTTTAATAAGACAAATATGAATAGTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCA
1 GTCTCTTCAATAAGACAAA-ATGAATAGTCATACTAATCCCCATTCTTTTCAAGATTAGGCACCA
* * * **
394317 TAAACATAGTCTTCTCATAAGGATACATGATATTTACGCTTTTGTTTCGTAAGAAAGGCATTT-T
65 CAAACATAGTCTTCTCATAAGGATACATGATATTGACGCTTTGGTTTCACAAGAAAGGC-TTTCT
* * * *
394381 TCCCTCTAATTTTTCTAAAGTCTAAGTTTGGGCCTCAAATGAGTCAAACATAGATTCTAGTAACG
129 TCCCTCCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGTCAAACATGGATTCTAGTAACG
* *
394446 ATCTTTATTCATTTCATGATTAGACACAATAAACGCATTCTCCTCATTAGGATAAATGATATTGA
194 ATCTTCATTCATTTCATGATTAGACACAATAAACACATTCTCCTCATTAGGATAAATGATATTGA
* * * * *
394511 TGATTTTATTTTGCATTGAAATGATTACTTTGCCCTATTTTCCTTAATATCAAAGTTCATCTCTT
259 TGATTTTATTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTT
* * * * * *
394576 AAATAAGGCAAGCATTGATTCTCATAACAATCTCTATTCTTCTCATGACTGGGAACCAAAAACAC
324 AAATAAGGCAAGCATTGATTTTCGTAACAGTCTCCATTCTTCTCAAGATTGGGAACCAAAAACA-
* * ** * * * *
394641 T-GT-CCTTTCATTAGGGTAAATGACTTTGATGCTTTGGTGTCGTAAGAAAAGCTTTTCTTTCAA
388 TATTCCCTTT-ATTAGGATACTTGACATTGATGCTTTGG-GTCGCAAGAAAAGCTATTCTTTCCA
* *
394704 CCGTTTTTGTTAGAATCAAAGTTTGTCTCTTTAATAAGACGAACATGAATAGTCATACTAATCCC
451 CCGTTTTTG-TAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCC
* ** * * * * *
394769 CATTCTTTTCAGGATTAGGCACCCCAAACATAGTTTTCACA-TAAGGATACATGATGTTGATGCT
515 CATTCTTTTCAGGATTAGGTACCATAAACATAGTCTACTCATTAA-GATAAATGATATTGATGCT
* * * * * *
394833 TTGGTTTCCCAAGAAAAGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGTCAT-AAAT
579 TTGGTTTCGCAACAAAGGCTTTCTTCCCTCCAATTTTTGTAAAGTCTAAGTTCGTG-CCTCAAAT
* * * ** * *
394897 GAGTCAAACATGGATTCTAGTAATGATCTTCATTCATTTCATGATTAGACATAATAAACAGATTC
643 AAGACAAACATGGATTCTAGTAATGATCATCATTCATTTTGTGATTAGGCAT-ATAAACACATTC
* * * *
394962 TCCTCATTAGGATAAATGGTATTGATGATTTTATTTTGATGGAAATGTTTCCTTTGCCCTATTTT
707 TCCTCATTAGGGTAAATGATATTGATGATTTTCTTTT-AAGGAAATGTTTCCTTTGCCCTATTTT
* ** * * * *
395027 CCTTAAAACCAAAGTTCATCCCCTAAAAAAGGCAAGCATTGATTCTCGCAGCAGTCTCTATTTTT
771 CCTTAAAATCAAAGTTCATCCATTAAATAAGGCAAGCATTGATTCTCGTAACAGTC-CTATTCTT
* *
395092 CTCAAGATTGGGAACCAAAAACATATTCCCTTCATTT-GGATACTTGACATTGATGCTTTGG-GA
835 CT-AAGA---GGAACTAAAAACATATTCCCTTC-TTTAGGATACATGACATTGATGCTTTGGTG-
* * ** * *
395155 TCACAAGAAAAGCTATTCTTTCT-A-TCATTTTGATAGAATCAAAGTTT
894 TCGCAAGAAAAGCTTTTCTTT-TAACTGTTTTTGTTAGAATCAAAATTT
* * * * * *
395202 GTCTCTTAAATAAGAC-AAA--CATAGTCATACTAATCCCTATTCTTTTCAGGATTAGGTACCAT
1 GTCTCTTCAATAAGACAAAATGAATAGTCATACTAATCCCCATTCTTTTCAAGATTAGGCACCAC
* * * *
395264 AAACATAGTCTACTCATTAAGG-TAGATGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTT
66 AAACATAGTCTTCTCA-TAAGGATACATGATATTGACGCTTTGGTTTCACAAGAAAGGCTTTCTT
* * *
395328 CCCTCCAATTTTTGTAAAGTCTAATTTTGTGCCTTAAATGAGTC-AACTATGGATTCTAGTAATG
130 CCCTCCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGTCAAAC-ATGGATTCTAGTAACG
* * * *
395392 ATCTTCATTCATTTCGTGACTAGACACAATGAACACATTCTCCTTATTAGGATAAATGATATTGA
194 ATCTTCATTCATTTCATGATTAGACACAATAAACACATTCTCCTCATTAGGATAAATGATATTGA
* * * * * *
395457 TGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATTCCTT
259 TGATTTTATTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTT
395522 AAATA
324 AAATA
395527 TGACAAACAT
Statistics
Matches: 1964, Mismatches: 226, Indels: 65
0.87 0.10 0.03
Matches are distributed among these distances:
944 2 0.00
945 16 0.01
946 711 0.36
947 355 0.18
948 16 0.01
949 40 0.02
950 486 0.25
951 332 0.17
952 6 0.00
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.36
Consensus pattern (941 bp):
GTCTCTTCAATAAGACAAAATGAATAGTCATACTAATCCCCATTCTTTTCAAGATTAGGCACCAC
AAACATAGTCTTCTCATAAGGATACATGATATTGACGCTTTGGTTTCACAAGAAAGGCTTTCTTC
CCTCCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGTCAAACATGGATTCTAGTAACGAT
CTTCATTCATTTCATGATTAGACACAATAAACACATTCTCCTCATTAGGATAAATGATATTGATG
ATTTTATTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAA
ATAAGGCAAGCATTGATTTTCGTAACAGTCTCCATTCTTCTCAAGATTGGGAACCAAAAACATAT
TCCCTTTATTAGGATACTTGACATTGATGCTTTGGGTCGCAAGAAAAGCTATTCTTTCCACCGTT
TTTGTAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCT
TTTCAGGATTAGGTACCATAAACATAGTCTACTCATTAAGATAAATGATATTGATGCTTTGGTTT
CGCAACAAAGGCTTTCTTCCCTCCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATAAGACAAA
CATGGATTCTAGTAATGATCATCATTCATTTTGTGATTAGGCATATAAACACATTCTCCTCATTA
GGGTAAATGATATTGATGATTTTCTTTTAAGGAAATGTTTCCTTTGCCCTATTTTCCTTAAAATC
AAAGTTCATCCATTAAATAAGGCAAGCATTGATTCTCGTAACAGTCCTATTCTTCTAAGAGGAAC
TAAAAACATATTCCCTTCTTTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTT
CTTTTAACTGTTTTTGTTAGAATCAAAATTT
Found at i:395792 original size:267 final size:267
Alignment explanation
Indices: 395311--395793 Score: 686
Period size: 267 Copynumber: 1.8 Consensus size: 267
395301 CTTTGGTTTC
* * * * * *
395311 GCAAGAAAGGCTTTCTTCCCTCCAATTTTTGTAAAGTCTAATTTTGTGCCTTAAATGAGTCAACT
1 GCAAGAAAGGCTTTCTTCCCACCAATTTTTATAAAGCCTAATTTCGTGCCTCAAATGAGACAACT
* * *
395376 ATGGATTCTAGTAATGATCTTCATTCATTTCGTGACTAGACACAATGAACACATTCTCCTTATTA
66 ATGGATTCTAGTAAGGATCTTCATTCATTTCGTGACTAGACACAATAAACACATTCTCCTCATTA
* *
395441 GGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAA
131 GGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTCCTTTACCCTATTTTCCTTAAAA
*
395506 TCAAAATTCATTCCTTAAATATGACAAACATTGTCTTTTCATAAGGATACACGATATTGATACCC
196 TCAAAATTAATTCCTTAAATATGACAAACATTGTCTTTTCATAAGGATACACGATATTGATACCC
395571 TGGATTT
261 TGGATTT
*
395578 GCAAGAAAGGCTTTCTTCCCACC-ATGTTTTATAATGCCT-ATGTTCGTGCCTCAAATGAGACAA
1 GCAAGAAAGGCTTTCTTCCCACCAAT-TTTTATAAAGCCTAAT-TTCGTGCCTCAAATGAGAC-A
* * * * * *
395641 AC-ATGGATTCTAGTAAGGATTTTCATTCATTTTGTGATTAGGCACTATAAACACATTTTCCTCA
63 ACTATGGATTCTAGTAAGGATCTTCATTCATTTCGTGACTAGACACAATAAACACATTCTCCTCA
* * * *
395705 TTAGGGTAAATGGTATTGATGATTTTCTTTTGCATGGAAATGTTTCCTTTACCCTATTTTCCTTA
128 TTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTCCTTTACCCTATTTTCCTTA
*
395770 AAATCAAAGTTAA-TCTCTTAAATA
193 AAATCAAAATTAATTC-CTTAAATA
395794 AGGCAAGCGC
Statistics
Matches: 188, Mismatches: 24, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
266 6 0.03
267 179 0.95
268 3 0.02
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.39
Consensus pattern (267 bp):
GCAAGAAAGGCTTTCTTCCCACCAATTTTTATAAAGCCTAATTTCGTGCCTCAAATGAGACAACT
ATGGATTCTAGTAAGGATCTTCATTCATTTCGTGACTAGACACAATAAACACATTCTCCTCATTA
GGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTCCTTTACCCTATTTTCCTTAAAA
TCAAAATTAATTCCTTAAATATGACAAACATTGTCTTTTCATAAGGATACACGATATTGATACCC
TGGATTT
Found at i:396497 original size:476 final size:475
Alignment explanation
Indices: 395531--398410 Score: 3462
Period size: 476 Copynumber: 6.1 Consensus size: 475
395521 TAAATATGAC
* * * **
395531 AAACATTGTCTTTTCATAAGGATACACGATATTGATACCCTGGATTTGCAAGAAAGGCTTTCTTC
1 AAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGG-TTTGCAAGAAAGGCTTTCTTC
** * * *
395596 CCACCATGTTTTATAATGCCTATGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGAT
65 CCACCAACTTTTATAATGTCTATATTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGAT
* * * * *
395661 TTTCATTCATTTTGTGATTAGGCACTATAAACACATTTTCCTCATTAGGGTAAATGGTATTGATG
130 CTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCCCATTAGGGTAAATGATATGGATG
* * * * * * *
395726 ATTTTCTTTTGCATGGAAATGTTTCCTTTACCCTATTTTCCTTAAAATCAAAGTTAATCTCTTAA
195 ATTTTCTTTTGCATGGAAATGTTTCTTTTGCCCTATTTTGCTTAAAATCAAATTTCATCCCATAA
*** * * *
395791 ATAAGGCAAGCGCGGATTCTCGTAACAATCTCCATTCTTCTT-ATGACT-AGGAACCAAAAA-AC
260 ATAAGGCAAGCTTTGATTCTCATAACAATCTCCATTCTT-TTGAAGATTGA-GAACCAAAAACAC
* * * *
395853 AATCCTTTCATTAGGATGCATGACATTGATGCTTTGGTGTCGGAAGAAAAGCTTTTCTTTCAACC
323 AATCCCTTCATTAGGATACATAACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACC
* * * *
395918 GTTTTTGTTAGAATCAAAGTTTGTCTCTTCAATAAGACAAACATGAATAGTTATACAAATCCCCA
388 ATTTTTGATAGAATCAAAGTTTGTCTCTTCAATAAGACAAACATGAATAGTCATACTAATCCCCA
*
395983 TTC-TTTCTAGGATTAGGGCACCAC
453 TTCTTTTC-AGGATTA-GGCACCAT
* * * * *
396007 AAACATAATCTTCTCATAAGGATACAAGACATTGATGCTTTTGTTTCGCAAGAAATGCTTTCTTC
1 AAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTT-GCAAGAAAGGCTTTCTTC
* * * * **
396072 CCACCAACTTTTATAATGGCTATATTTGTACCTCAAATGAGAAAAACATAAATTTCTAGTAATGA
65 CCACCAACTTTTATAATGTCTATATTCGTGCCTCAAATGAGACAAACATGGA-TTCTAGTAATGA
* * * *
396137 TCTTCTTTCATTTTGTGTTTAGGCACTATAAATA-ATTCTCCCCATTAGGATAAATGATATGGAT
129 TCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCCCATTAGGGTAAATGATATGGAT
* ** * *
396201 AATTTTCTTTTGCATGGAGTTGTTTCTTTTGCCCTATTTTACTTAAAATCAACTTTCATCCCATA
194 GATTTTCTTTTGCATGGAAATGTTTCTTTTGCCCTATTTTGCTTAAAATCAAATTTCATCCCATA
* *
396266 AATAAGGTAAGCTTTGATTCTCATAACAATCTCTATTCTTTTGAAGATTGAGAACCAAAAACACA
259 AATAAGGCAAGCTTTGATTCTCATAACAATCTCCATTCTTTTGAAGATTGAGAACCAAAAACACA
* *
396331 ATCCCTTCATTAGGATACCTAACATTGATGCTTTGGTGTCGTAAGAAAAGCTTTTCTTTCAACCA
324 ATCCCTTCATTAGGATACATAACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCA
* * * * * *
396396 CTTCTGATAGAATCAAAGTTTGTCTCTTCAATAAGACAAATATAAATAGTTATACTAGTCCCCAT
389 TTTTTGATAGAATCAAAGTTTGTCTCTTCAATAAGACAAACATGAATAGTCATACTAATCCCCAT
*
396461 TCTTTTCAAGATTAGGCACCAT
454 TCTTTTCAGGATTAGGCACCAT
* * * ** *
396483 AAACATAGTCTTCTCTTAAGGATACATGATATTGACGCTTTAATTTGGCAAGAAAGGTTTTCTTC
1 AAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTT-GCAAGAAAGGCTTTCTTC
* * * * * ** ** *
396548 CTACCAATTTTTTTACA-GTCTA-AGTTCATGCCTCTAATGAGACAAACATTAATTCTAGTGGTT
65 CCACCAACTTTTATA-ATGTCTATA-TTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATG
* * ** * ** * *
396611 ATCTTTATTCATTTTGTTATTAGGCAGAATAAACACATTCTCCTCATTACAGTATATGATATTGA
128 ATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCCCATTAGGGTAAATGATATGGA
* * * * * *
396676 TGATATTCTTTTGCGTGGAAATGTTTCCTTTGCCCTATTTTGCTTAAAATTAAAATTCATCCCTT
193 TGATTTTCTTTTGCATGGAAATGTTTCTTTTGCCCTATTTTGCTTAAAATCAAATTTCATCCCAT
* * * * * * *
396741 AAATATGACAAG-TATCGATTCTCATAATAGTCTCCATTCTTTTCCAA-ATT-AGGAACCAAGAA
258 AAATAAGGCAAGCT-TTGATTCTCATAACAATCTCCATTCTTTT-GAAGATTGA-GAACCAAAAA
* * * * *
396803 CACATTCCCTTCGTTAGGATACATGACATTGATGCTTTAGTGTCGCAAGAAAAGTTTTTCTTTCA
320 CACAATCCCTTCATTAGGATACATAACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCA
* * * * *
396868 ATCGTTTTTGATAGAATCAAAGTTTGTCTCTTTAATAAGACAAACAGGAACAGTCATACTAATCC
385 ACCATTTTTGATAGAATCAAAGTTTGTCTCTTCAATAAGACAAACATGAATAGTCATACTAATCC
***
396933 CCATTCTTTTCCTTATTAGGCACCAT
450 CCATTCTTTTCAGGATTAGGCACCAT
* * *
396959 -ATCATAGAGTCCTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGCAAGAAATGCTTTCT
1 AAACAT--AGTCTTCTCATAAGGATACACGATATTGATGCTTTGG-TTTGCAAGAAAGGCTTTCT
* * * *
397023 TCCCACCAATTTTTATAATGTCTA-AGTTTGTGCCTCAAATGAGACAATCATAGATT-TCAGTAA
63 TCCCACCAACTTTTATAATGTCTATA-TTCGTGCCTCAAATGAGACAAACATGGATTCT-AGTAA
* *
397086 TGATCTTCATTCATTTTGTGGTTAGGCACTATAAATA-ATTCTCCCCATTAGGGTAAATGATATG
126 TGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCCCATTAGGGTAAATGATATG
* * * * *
397150 GATGATTTTCTTTTGCGTAGAAATGTTTCATGTGCCCTATTTTGCTTAAAATCAACTTTCATCCC
191 GATGATTTTCTTTTGCATGGAAATGTTTCTTTTGCCCTATTTTGCTTAAAATCAAATTTCATCCC
* * * *
397215 ATAAATAAGGTAATCTTTGATTCTCATAACAATCTCCATTCTTTTGAAGATTGGGAGCCAAAAAC
256 ATAAATAAGGCAAGCTTTGATTCTCATAACAATCTCCATTCTTTTGAAGATTGAGAACCAAAAAC
* * *
397280 ACAATCCCTTCATTAGGAAACCTAACATTGATGCTTTGGTGTCGC-AGAAAAGCCTTTCTTTCAA
321 ACAATCCCTTCATTAGGATACATAACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAA
* *
397344 CCATTTTTGATAGAATCAAAGTTTCTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCC
386 CCATTTTTGATAGAATCAAAGTTTGTCTCTTCAATAAGACAAACATGAATAGTCATACTAATCCC
* *
397409 CATTTTTTTCAGGATTAGGCACTAT
451 CATTCTTTTCAGGATTAGGCACCAT
* * * *
397434 AAACATAGTCTTCTCATAAAGATACAGGATATTGACGCCTTGGATTTGCAAGAAAGGCTTTCTTC
1 AAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGG-TTTGCAAGAAAGGCTTTCTTC
* * ** * *
397499 GCACCAAGTTTTATAATGTCTACGTTCGTGCCTCAAATGAGACAAACATGGATTTTAGTAGTGAT
65 CCACCAACTTTTATAATGTCTATATTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGAT
* * * * *
397564 CATCATTCTTTTTTTGATTAGGCACTATAAACACGTTCTCCTCC-TT-GGCGTAAATGATATTGA
130 CTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCC-CCATTAGG-GTAAATGATATGGA
* * * *
397627 TGATTTT-TTTTGCATGGAAATGTTT-TTTT-TCCTATTTTCCTTAAAATCAAAGTTCATCCCTT
193 TGATTTTCTTTTGCATGGAAATGTTTCTTTTGCCCTATTTTGCTTAAAATCAAATTTCATCCCAT
* * * * * * * ** * * *
397689 AAACACGGCAAGCATTGATTCCCATAACAGTCTCTATCCTTTACAATATTGGGAAACAAAAACAC
258 AAATAAGGCAAGCTTTGATTCTCATAACAATCTCCATTCTTTTGAAGATTGAGAACCAAAAACAC
* * *
397754 AAT-CATTCATTAGGATACATGAC----ATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTTAACC
323 AATCCCTTCATTAGGATACATAACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACC
* * * * *
397814 GTTTTTGTTAGAATCAAAGTTTGTCTCTTTAATAAGTCAAACATGAATAGTCATA-AAATCCCCA
388 ATTTTTGATAGAATCAAAGTTTGTCTCTTCAATAAGACAAACATGAATAGTCATACTAATCCCCA
397878 TTC-TTTCTAGGATTAGGCACCAT
453 TTCTTTTC-AGGATTAGGCACCAT
* * * *
397901 AAACATAATCTTCTCATAAAGATACACGATATTGATGCTTTGGTTTCGTAAGAAACGCTTTCTTC
1 AAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTT-GCAAGAAAGGCTTTCTTC
* * *
397966 CCCCCAACTTTTATAATGTCTATATTTGTGCCTCAAATGAGACAAACATGGATTCGAGTAATGAA
65 CCACCAACTTTTATAATGTCTATATTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATG-A
* * * * *
398031 CCGT-ATTCATTTTGCGGTTAGGCACTATAAATA-ATTCTCCCCATTAGGGTAAATGATATGGAT
129 TCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCCCATTAGGGTAAATGATATGGAT
* * * *
398094 GATTTTCTTTTACATGGAAATCTTTCTTGTGCCCTATTTTGCTTAAAATCAACTTTCATCCCATA
194 GATTTTCTTTTGCATGGAAATGTTTCTTTTGCCCTATTTTGCTTAAAATCAAATTTCATCCCATA
* * *
398159 AATAAGGTAAGCTTTGATTCTCATAACAATCTCCATTCTTTTGAAGATTGGGAACTAAAAACACA
259 AATAAGGCAAGCTTTGATTCTCATAACAATCTCCATTCTTTTGAAGATTGAGAACCAAAAACACA
* *
398224 ATCCCTTCATTAGGATACCTAATATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCA
324 ATCCCTTCATTAGGATACATAACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCA
398289 TTTTTGATAGAATCAAAGTTTGTCTC-TCAAATAAGACAAACATGAATAGTCATACTAATCCCCA
389 TTTTTGATAGAATCAAAGTTTGTCTCTTC-AATAAGACAAACATGAATAGTCATACTAATCCCCA
*
398353 TTCTTTTCAGGATTAGGCACTAT
453 TTCTTTTCAGGATTAGGCACCAT
* *
398376 AAACATAGTTTTCTCATAAGGATACATGATATTGA
1 AAACATAGTCTTCTCATAAGGATACACGATATTGA
398411 CACCTTGGAT
Statistics
Matches: 2033, Mismatches: 328, Indels: 87
0.83 0.13 0.04
Matches are distributed among these distances:
465 2 0.00
466 35 0.02
467 190 0.09
468 75 0.04
469 83 0.04
470 16 0.01
471 16 0.01
472 82 0.04
473 3 0.00
474 238 0.12
475 231 0.11
476 757 0.37
477 298 0.15
478 7 0.00
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (475 bp):
AAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTGCAAGAAAGGCTTTCTTCC
CACCAACTTTTATAATGTCTATATTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATC
TTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCCCATTAGGGTAAATGATATGGATGA
TTTTCTTTTGCATGGAAATGTTTCTTTTGCCCTATTTTGCTTAAAATCAAATTTCATCCCATAAA
TAAGGCAAGCTTTGATTCTCATAACAATCTCCATTCTTTTGAAGATTGAGAACCAAAAACACAAT
CCCTTCATTAGGATACATAACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCATT
TTTGATAGAATCAAAGTTTGTCTCTTCAATAAGACAAACATGAATAGTCATACTAATCCCCATTC
TTTTCAGGATTAGGCACCAT
Found at i:399351 original size:537 final size:532
Alignment explanation
Indices: 397994--399603 Score: 1686
Period size: 535 Copynumber: 3.0 Consensus size: 532
397984 TCTATATTTG
* * * *
397994 TGCCTCAAATGAGACAAACATGGATTCGAGTAATGAACCGTATTCATTTTGCGGTTAGGCACTAT
1 TGCCTCAAATGAGACAAACATGGATTCTAGTAATG-ATCTTATTCATTTTGCGATTAGGCACTAT
* * * *
398059 AAATAATTCTCCC-CATTAGGGTAAATGATATGGATGATTTTCTTTTACATGGAAATCTTTCTTG
65 AAACAATTC-CCCTCATTAGGGTAAATGATATTGATGATTTTCTTTTGCATGGAAATGTTTCTTG
398123 TGCCCTATTTTGCTTAAAATCAACTTTCATCCCATAAATAAGGTAAGCTTTGATTCTCATAACAA
129 TGCCCTATTTTGCTTAAAATCAACTTT-ATCCCATAAATAAGGTAAGCTTTGATTCTCATAACAA
*
398188 TCTCCATTCTTTTGAAGATTGGGAACTAAAAACACAATCCCTTCATTAGGATACCTAAT-ATTGA
193 TCTCCATTCTTTTGAAGATTGGGAACCAAAAACACAATCCCTTCATTAGGATACCT-ATCATTGA
* *
398252 TGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTC
257 TGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTT
*
398317 AAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACTATAAACAT
322 AAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACAT
* * * * * * *
398382 AGTTTTCTCATAAGGATACATGATATTGACACCTTGG-AT-G-GAG-TAGGC--AC--CATA--A
387 AGTCTTCTCATAAGGATACACGATATTGACACCTTGGTTTCGTAAGAAAGGCTTTCTTCCTACCA
* * * * ** * * * * *
398437 A-C---ATAGTCTTCTCAT-ATG-GATACACAATATTGACGCTTTGGTTTCAAAAG-AAAGGCTT
452 ATCTTTATAAT-TTCT-ATGTTGTGCTACA-AATAGT-AAAC-ATGGTTTC--TAGTAATGACCT
* *
398495 TC-TTCCCACTAATTTTAAAAATGTTTAAGTTCAC
510 TCATT--CA-T--TTTT-----TGATT-AG-GCAC
* * * * *
398529 -GTCTCAATTGAGACCAACATGGATTCTAGTAGTGATCTTTATTCATTTGGCGATTAGGCACTAT
1 TGCCTCAAATGAGACAAACATGGATTCTAGTAATGATC-TTATTCATTTTGCGATTAGGCACTAT
* *** * * * *
398593 ATACAAATTTAGCTCATTAGGATAAATGATTTTGTTGATTTTGTTTTGCATGGAAATGTTTCTTG
65 AAAC-AATTCCCCTCATTAGGGTAAATGATATTGATGATTTTCTTTTGCATGGAAATGTTTCTTG
* *
398658 TGCCCTATTTTGCTTAAAATCAACTTTCATCCCATAAATGATGTAAGCTTTGATTCTCATAACAA
129 TGCCCTATTTTGCTTAAAATCAACTTT-ATCCCATAAATAAGGTAAGCTTTGATTCTCATAACAA
* * * *
398723 TCTCCATTCTTTTGAAGATTAGGAACCAAAAACATAATCCCTTCGTTAGGATACCTAACATTGAT
193 TCTCCATTCTTTTGAAGATTGGGAACCAAAAACACAATCCCTTCATTAGGATACCTATCATTGAT
* * * *
398788 GCTTTAGTGTCGCAAGAAAAGCTTTTCTTCCAACCGTTTTTGTTAGAATCAAAGTTTGCCTCTTA
258 GCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTA
* *
398853 AATAAGACGAACATAAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATA
323 AATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATA
* * * **
398918 GTCTTCTTAGAAGGATACACGATATTAATGCCTTGGTTTCGTAAGAAAGGCTTTCTTCCTACCAA
388 GTCTTCTCATAAGGATACACGATATTGACACCTTGGTTTCGTAAGAAAGGCTTTCTTCCTACCAA
**
398983 TCTTTATAATTTCTATGTTCGTGCCCCAAATAAGTCAAACATGGTTTCTAGTAATGACCTTCATT
453 TCTTTATAATTTCTATGTT-GTGCTACAAAT-AGT-AAACATGGTTTCTAGTAATGACCTTCATT
399048 CATTTTTTGATTAGGCAC
515 CATTTTTTGATTAGGCAC
* * * *
399066 TGCCTTAAATGAGACAAACATGGATTCTAGTAATGATCTTCAATCATTTTGTGATTAAGCACTAT
1 TGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTT-ATTCATTTTGCGATTAGGCACTAT
* *
399131 AAACATGTTCCCCTCATTTGGGTAAATGATATTGATGATTTTCTTTTGCATGGAAATGTTTCCTT
65 AAACA-ATTCCCCTCATTAGGGTAAATGATATTGATGATTTTCTTTTGCATGGAAATGTTT-CTT
* * * * * * * **
399196 -TGCCTTATTTTCCTTAAAATTAAAGTTT-TCCCTTAAATAAGGCAAGCATTGATTCTTGTAACA
128 GTGCCCTATTTTGCTTAAAA-TCAACTTTATCCCATAAATAAGGTAAGCTTTGATTCTCATAACA
* * * * * *
399259 ATCTCCATTCTTTTCAGGATTGGGAACCAAGAGCACAATCCCTTCATTAGGATACATGTCATTGA
192 ATCTCCATTCTTTTGAAGATTGGGAACCAAAAACACAATCCCTTCATTAGGATACCTATCATTGA
* * * *
399324 TGCTTTGGTGTCGCATGAAAAGCTTTTCTTTCAATCGTTTTTGATAAAATCAAAGTTTGTATCTT
257 TGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTT
* * * * ** *
399389 AAATAAGATAAGCATGAATAGTGATACTAATCCCCATTTTTTTCATTATTAGGCACCATAATCAT
322 AAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACAT
* * * * * *
399454 AGTCTTCTCATAACGATACAGGATTTTGACACTTTGGTTTCATAATAAAGGCTTTCGTCTCC--C
387 AGTCTTCTCATAAGGATACACGATATTGACACCTTGGTTTCGTAAGAAAGGCTTTC-T-TCCTAC
* ** * * *** *
399517 CAATTTTTATAATGACTAAGTTTGTGCTTCAAATGAGATAAACATCAATTCTAGTAATGATCTTC
450 CAATCTTTATAATTTCTATG-TTGTGCTACAAAT-AG-TAAACATGGTTTCTAGTAATGACCTTC
* *
399582 ATTCATTTTGTGATTAAGCAC
512 ATTCATTTTTTGATTAGGCAC
399603 T
1 T
399604 ATAAACATAT
Statistics
Matches: 896, Mismatches: 146, Indels: 64
0.81 0.13 0.06
Matches are distributed among these distances:
533 2 0.00
534 56 0.06
535 319 0.36
536 1 0.00
537 318 0.35
538 126 0.14
539 20 0.02
541 1 0.00
543 3 0.00
544 4 0.00
545 2 0.00
546 2 0.00
547 6 0.01
548 12 0.01
549 17 0.02
550 7 0.01
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (532 bp):
TGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTATTCATTTTGCGATTAGGCACTATA
AACAATTCCCCTCATTAGGGTAAATGATATTGATGATTTTCTTTTGCATGGAAATGTTTCTTGTG
CCCTATTTTGCTTAAAATCAACTTTATCCCATAAATAAGGTAAGCTTTGATTCTCATAACAATCT
CCATTCTTTTGAAGATTGGGAACCAAAAACACAATCCCTTCATTAGGATACCTATCATTGATGCT
TTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAT
AAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTC
TTCTCATAAGGATACACGATATTGACACCTTGGTTTCGTAAGAAAGGCTTTCTTCCTACCAATCT
TTATAATTTCTATGTTGTGCTACAAATAGTAAACATGGTTTCTAGTAATGACCTTCATTCATTTT
TTGATTAGGCAC
Found at i:400146 original size:236 final size:236
Alignment explanation
Indices: 399694--400168 Score: 695
Period size: 236 Copynumber: 2.0 Consensus size: 236
399684 TTAAAATCAA
* * * * *
399694 AGTTCATCTCTTAAATAAGGCAAGCATTGATTCTTGTAACAATGTCCATTCTTCTCATGACTGGG
1 AGTTCATCTCCTAAATAAGGCAAGCATTGATTCTCGTAACAATCTCCATTCTTCTCAAGACTGAG
* * *
399759 AACCAAAAACATAATCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGGAAGAAAAGCT
66 AACCAAAAACACAATCCCTTCATTAGGATACATGACATTGATGCCTTGCTGTCGGAAGAAAAGCT
* * * * *
399824 TTTCTTTCAACTGTTTTTGATATAATCAAAGTTTGGCTCTTCAATAAGACAAACATGAATAGTCA
131 TTTCTTTCAACCGTTTTAGATAGAATCAAAGTTTGGCTCTTAAATAAGACAAACAAGAATAGTCA
*
399889 TACAAATCCCTACTTTTTTCAGGATTAGGCACCATAAACAT
196 TACAAATCCCTACTTTTTTCAGGATTAGGCACCACAAACAT
* *
399930 AGTTCATCTCCTAAATAAGGCAAGCATTGATTCTCGTAACAATCTCCATTCCTTC-CAAGATTTA
1 AGTTCATCTCCTAAATAAGGCAAGCATTGATTCTCGTAACAATCTCCATT-CTTCTCAAGACTGA
* *
399994 GAACCGAAAACACAATCCCTTCATTAGGATACATGACATTGATGCCTTGCTGTCGTAAGAAAAGC
65 GAACCAAAAACACAATCCCTTCATTAGGATACATGACATTGATGCCTTGCTGTCGGAAGAAAAGC
* * *
400059 TTTTCTTTCAACCGTTTTAGTTAGAATCAAAGTTTGTCTCTTAAATTAAGACAAATAAGAATAGT
130 TTTTCTTTCAACCGTTTTAGATAGAATCAAAGTTTGGCTCTTAAA-TAAGACAAACAAGAATAGT
* *
400124 GATACTAATCCC-A-TTCTTTTCAGGATTAGGCACCACAAACAT
194 CATACAAATCCCTACTT-TTTTCAGGATTAGGCACCACAAACAT
400166 AGT
1 AGT
400169 CTTCTTATTA
Statistics
Matches: 213, Mismatches: 23, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
235 2 0.01
236 180 0.85
237 31 0.15
ACGTcount: A:0.33, C:0.20, G:0.14, T:0.32
Consensus pattern (236 bp):
AGTTCATCTCCTAAATAAGGCAAGCATTGATTCTCGTAACAATCTCCATTCTTCTCAAGACTGAG
AACCAAAAACACAATCCCTTCATTAGGATACATGACATTGATGCCTTGCTGTCGGAAGAAAAGCT
TTTCTTTCAACCGTTTTAGATAGAATCAAAGTTTGGCTCTTAAATAAGACAAACAAGAATAGTCA
TACAAATCCCTACTTTTTTCAGGATTAGGCACCACAAACAT
Found at i:402797 original size:951 final size:947
Alignment explanation
Indices: 400488--402803 Score: 2996
Period size: 951 Copynumber: 2.4 Consensus size: 947
400478 AACATATTTC
* * * *
400488 TTAATGCTTTGGTGTCGTAAGAAAATCTTTTCTTTCCACCGTTTTGGTTAGAATCAAAGTTTGTC
1 TTAATGCTTTGGTGTCGAAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTC
* * * *
400553 TCTTAAATAAGACAAA-TATGAATAGTTATACTATTCCTCATTCTTTTTAGGGTTAGGCACCATA
66 TCTTAAA-AAGACAAACT-TGAATAGTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATA
** * * * * *
400617 AACCCAGTCTTTTTATAAGGATACACGATATTGACGCTTTGATTTCGCAAGAAAAGCTTTCTTCC
129 AACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCC
* * * *
400682 CACCAATTTTTATAATGTCTAAGTTCGTGCCTCCATTGAGATAAACATGGATTCTAGTAACGATC
194 CACCAATTTTTGTAATGTCTAAGTTCGTGCCTCAAATGAGATAAACATGGATTCTAGTAATGATC
* * * * *
400747 TTCATTCATTTTATGATTAGGCACTATAAGCACATTCTCCTCATTAGGGTAAATGATATTAATAA
259 TTCATTCATTTTGTGACTAGGCACTATAAACACATTCTCCTCATTAGGGTAAATGATATTGATGA
* * * *
400812 TTTTCTTTTGCATGAATATATTTTCCTTGCCCTATTGTCCTT-AAATTAAAATTCATCCCTTAAA
324 TTTTCTTTTGCATGAAAATATTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAA
* * * * * *
400876 TATGACAAGCTTCAATTCTCGTAACAGCCTCCATTCTTTTCAAGATTGGGAACCAAGAATACATT
389 TATGACAAGCTT-GATTCTCGCAACAACCTCCATTCTTTTCAAGATTGGGAACCAAAAACACAAT
*
400941 CCCTTCATTTGGATACATGACATTGATGCGTTAGTATCGTAAGAAAAGCTTTTCTTGCAACCGTT
453 CCCTTCATTTGGATACATGACATTGATGCGTTAGTATCGCAAGAAAAGCTTTTCTTGCAACCGTT
* * *
401006 TTTTATAGAATCAAAATTTGTCTCTTTAATAAAACAAACATGAATAGTCATACTAATCCCTATTC
518 TTGTATAGAAACAAAATTTGTCTCTTAAATAAAACAAACATGAATAGTCATACTAATCCCTATTC
401071 TTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACAATAATTACGCTTTGGTT
583 TTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACAATAATTACGCTTTGGTT
* * * * * *
401136 TTGGAAAAAAGGCTTCCTGCCTACCAATTTTGTAAAGTTTAAGTTTGTGCGTCAAAGGTGACAAA
648 TTGCAAAAAAGGCTTCCTGCCCACCAATTTTGTAAAGTGTAAGTTTGTACCTCAAAGGAGACAAA
* * **
401201 TATGGATTCTACTAATGATATTCATTCATTTTGTGATTAGGCATTATAAACAATTCTCCTCATTA
713 CATGGATTCTACTAATGATATTCATTCATTTTGTGATTAGGCACTATAAACAATTAACCTCATTA
401266 GGATAAATGATATTGATGATTTCTTTTGCATAAAAATCTTTTCTTTGCCTTATTTTCCTTAAAAT
778 GGATAAATGATATTGATGATTTCTTTTGCATAAAAATCTTTTCTTTGCCTTATTTTCCTTAAAAT
* * * * **
401331 CAAAATTCATACCTTAAATATTATAAGCTTTGATTCTCATAACAGTCTCCATTCATTTCAAGATT
843 CAAAATTCATACCTCAAATATAACAAGCATCAATTCTCATAACAGTCTCCATTCATTTCAAGATT
*
401396 AGGAAACAAGAATACATTCCCTTCATTAGGATACATGACA
908 AGGAAACAAGAACACATTCCCTTCATTAGGATACATGACA
* * *
401436 TTAATGCTTTGGTGTCGAAAGAAAAGCTTTTCTTTCCACCATTTTTTATAGAATCAAAATTTGTC
1 TTAATGCTTTGGTGTCGAAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTC
** * * **
401501 TCTTAAAAAAGACAAACAAGAATAGTCATTCCAATCTGCATTCTTTTTAGGATTAGGCACCATAA
66 TCTT-AAAAAGACAAACTTGAATAGTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAA
* *
401566 ACATAGTCTTCTCATAAGGATACACGTTATTGATGCTTTGGCTTT-GCAAGAAAAGGCTTTCGTC
130 ACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGG-TTTCGCAAG-AAAGGCTTTCTTC
* * * *
401630 CCTCCAATATTTGTAATGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTGGTAATGAT
193 CCACCAATTTTTGTAATGTCTAAGTTCGTGCCTCAAATGAGATAAACATGGATTCTAGTAATGAT
* * *
401695 CTTCATTTATTTTGTGACTTAGGCATTATAAACACATTCTCCTTATTAGGGTAAATGATATTGAT
258 CTTCATTCATTTTGTGAC-TAGGCACTATAAACACATTCTCCTCATTAGGGTAAATGATATTGAT
* * * * * * *
401760 GATTTTCTTTTGCATGGAAATGTTTTGTTTACCCTATTTTTCTTAAAATCAAAGTTCATCTCTTA
322 GATTTTCTTTTGCATGAAAATATTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTA
* * * * * ** *
401825 GATAAGGCAGGCATTGATTCTCGCAGCAATTTCTATTCTTTTCAAGATTGGGAACCAAAAACACA
387 AATATGACAAGC-TTGATTCTCGCAACAACCTCCATTCTTTTCAAGATTGGGAACCAAAAACACA
* * * *
401890 ATCCCTTC-TTTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACC
451 ATCCCTTCATTT-GGATACATGACATTGATGCGTTAGTATCGCAAGAAAAGCTTTTCTTGCAACC
* * *
401954 GTTTTGGT-TAGAAACAAAGTTTGTCTCTTAAATAAGACAAATATGAATAGTCATACTAATCCCC
515 GTTTT-GTATAGAAACAAAATTTGTCTCTTAAATAAAACAAACATGAATAGTCATACTAAT-CCC
* * ** ** * **
402018 T-TTCTTTTCAAGATTAGGCACCATAATCGTAGTCTTCTCATAAGGATATGCGTTATTTGTGCTT
578 TATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACAATAATTACGCTT
* * * * * * *
402082 TGGTTTTGCAAGAAAGGTTTTCTTCCCATCAATTTTGTAAAGTGTAAGTTTTTACCTCAAATGAG
643 TGGTTTTGCAAAAAAGGCTTCCTGCCCACCAATTTTGTAAAGTGTAAGTTTGTACCTCAAAGGAG
* * * *
402147 ACAAACATGGATTCTAGTAATGAT-CTCTATTCATTTTGTGATTAGGCACTATATACAAATTAAG
708 ACAAACATGGATTCTACTAATGATATTC-ATTCATTTTGTGATTAGGCACTATAAAC-AATTAAC
* * * **
402211 CTCATTAGGATAAATGATTTTGTTGATTTTTTTTGCATGGAAATCTTTTCTTTG-CTCTATTTTC
771 CTCATTAGGATAAATGATATTGATGATTTCTTTTGCATAAAAATCTTTTCTTTGCCT-TATTTTC
* *
402275 CTTAAAATCAAAATTCAT-CACTCAAATATAACAAGCATCAATTCTCGTAACAGTCTCCATTCTT
835 CTTAAAATCAAAATTCATAC-CTCAAATATAACAAGCATCAATTCTCATAACAGTCTCCATTCAT
* * *
402339 TTCAAGTTTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACA
899 TTCAAGATTAGGAAACAAGAACACATTCCCTTCATTAGGATACATGACA
* * * * *
402388 TTGATGCTTTGATATCGCAAGAAAAGCTTTTCTTTCCATCGTTTTTGATAGAATTC-AAGTTTGT
1 TTAATGCTTTGGTGTCGAAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAA-TCAAAGTTTGT
* * *
402452 CTTTTAAAAAGGACAAACTTGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCACA
65 CTCTTAAAAA-GACAAACTTGAATAGTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATA
* * * * * * * *
402517 AACATAATATTCTCGTTAGGATAGACGATGTAGATGCTTTGGTTTCACAAGAAAGGCTTTTCTTC
129 AACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGC-TTTCTTC
* * * * *
402582 CCACAAATTTTTGTAAAGTGTAAGTTCTTGCCTCAAATAAGATAAACATGGATTCTAGTAATGAT
193 CCACCAATTTTTGTAATGTCTAAGTTCGTGCCTCAAATGAGATAAACATGGATTCTAGTAATGAT
* *
402647 CTTCATTCATTTTGTGACTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATACTGATG
258 CTTCATTCATTTTGTGACTAGGCACTATAAACACATTCTCCTCATTAGGGTAAATGATATTGATG
* * * *
402712 CTTTTCTTTTGCATGAAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAAATTCATCCCATAA
323 ATTTTCTTTTGCATGAAAATATTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAA
* * *
402777 ATTTCACAAGCTTGGATTCTCGTAACA
388 ATATGACAAGCTT-GATTCTCGCAACA
402804 GTCTCCATAC
Statistics
Matches: 1166, Mismatches: 183, Indels: 35
0.84 0.13 0.03
Matches are distributed among these distances:
948 148 0.13
949 89 0.08
950 84 0.07
951 457 0.39
952 386 0.33
953 2 0.00
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (947 bp):
TTAATGCTTTGGTGTCGAAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTC
TCTTAAAAAGACAAACTTGAATAGTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAA
CATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCA
CCAATTTTTGTAATGTCTAAGTTCGTGCCTCAAATGAGATAAACATGGATTCTAGTAATGATCTT
CATTCATTTTGTGACTAGGCACTATAAACACATTCTCCTCATTAGGGTAAATGATATTGATGATT
TTCTTTTGCATGAAAATATTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATA
TGACAAGCTTGATTCTCGCAACAACCTCCATTCTTTTCAAGATTGGGAACCAAAAACACAATCCC
TTCATTTGGATACATGACATTGATGCGTTAGTATCGCAAGAAAAGCTTTTCTTGCAACCGTTTTG
TATAGAAACAAAATTTGTCTCTTAAATAAAACAAACATGAATAGTCATACTAATCCCTATTCTTT
TCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACAATAATTACGCTTTGGTTTTG
CAAAAAAGGCTTCCTGCCCACCAATTTTGTAAAGTGTAAGTTTGTACCTCAAAGGAGACAAACAT
GGATTCTACTAATGATATTCATTCATTTTGTGATTAGGCACTATAAACAATTAACCTCATTAGGA
TAAATGATATTGATGATTTCTTTTGCATAAAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAA
AATTCATACCTCAAATATAACAAGCATCAATTCTCATAACAGTCTCCATTCATTTCAAGATTAGG
AAACAAGAACACATTCCCTTCATTAGGATACATGACA
Found at i:403183 original size:432 final size:431
Alignment explanation
Indices: 402378--403242 Score: 1179
Period size: 432 Copynumber: 2.0 Consensus size: 431
402368 CTTCATTAGG
* * * *
402378 ATACATGACATTGATGCTTTGATATCGCAAGAAAAGCTTTTCTTTCCATCGTTTTTGATAGAATT
1 ATACATGACACTAATGCTTTGATATCGCAAGAAAAGCTTTTCTTTCCACCGATTTTGATAGAATT
* *
402443 CAAGTTTGTCTTTTAAAAAGGACAAACTTGAATAGTCATACTAATCCCCATTCTTTTCAGGATTA
66 CAAGTTTGTCTCTTAAAAAGGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTA
* * * * * *
402508 GGCACCACAAACATAATATTCTCGTTAGGATAGACGATGTAGATGCTTTGGTTTCACAAGAAAGG
131 GGCACCACAAACATAATATTCTCATAAGGATACACGATATAGACGCTTTGATTTCACAAGAAAGG
* * * * *
402573 CTTTTCTTCCCACAAATTTTTGTAAAGTGTAAGTTCTTGCCTCAAATAAGATAAACATGGATTCT
196 CTTTTATTCCCACAAATTTTTATAAAGTCTAAGTTCGTGCCTCAAATAAGATAAACATAGATTCT
* *
402638 AGTAATGATCTTCATTCATTTTGTGACTAGGCACTATAAACACATTCTCCTCATTAGGATAAATG
261 AGTAACGATATTCATTCATTTTGTGACTAGGCACTATAAACACATTCTCCTCATTAGGATAAATG
* *
402703 ATACTGATGCTTTTCTTTTGCATGAAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAAATTC
326 ATACTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTT-AAATCAAAATTC
* *
402768 ATCCCATAAATTTCACAAGCTTGGATTCTCGTAACAGTCTCC
390 ATCCCATAAATATCACAAGCTTCGATTCTCGTAACAGTCTCC
*
402810 ATACATGACACTAATGCTTT-AGTGTCGCAAGAAAAGCTTTTCTTT-CACCCGATTTTGATAGAA
1 ATACATGACACTAATGCTTTGA-TATCGCAAGAAAAGCTTTTCTTTCCA-CCGATTTTGATAGAA
* * *
402873 -TCATAGTTTGTCTCCTTAATAA-GACTAAACATGAATAGTTATACTAATCCCCATTCTTTTTAG
64 TTCA-AGTTTGTCT-CTTAAAAAGGAC-AAACATGAATAGTCATACTAATCCCCATTCTTTTCAG
* * * * * * * *
402936 GGTTAGGCACCATAAAC-TCAGTCTTCTTATAAGGATACATGATATTGACGCTTTGATTTCGCAA
126 GATTAGGCACCACAAACAT-AATATTCTCATAAGGATACACGATATAGACGCTTTGATTTCACAA
* * *
403000 GAAAGG-TTTTATTCCCACCAATTTTTATAATGTCTAAGTTCGTGCCTC-AATCATGATAAACAT
190 GAAAGGCTTTTATTCCCACAAATTTTTATAAAGTCTAAGTTCGTGCCTCAAAT-AAGATAAACAT
* *
403063 AGATTCTAGTAACGATATTCATTCATTTTGTGATTAGGCACTATAAGCACATTCTCCTCATTAGG
254 AGATTCTAGTAACGATATTCATTCATTTTGTGACTAGGCACTATAAACACATTCTCCTCATTAGG
* * *
403128 GTAAATGATATTGATGATTTTCTTTTGCATGAAAAT-TTTTTTCTTGCCCTATTTTCCTTAAATC
319 ATAAATGATACTGATGATTTTCTTTTGCATGAAAATCTTTTCT-TTGCCCTATTTTCCTTAAATC
* * *
403192 AAAATTCATCCCTTAAATATGACAAGCTTCGATTCTTGTAACAGTCTCC
383 AAAATTCATCCCATAAATATCACAAGCTTCGATTCTCGTAACAGTCTCC
403241 AT
1 AT
403243 TCTTTTCAAG
Statistics
Matches: 379, Mismatches: 46, Indels: 17
0.86 0.10 0.04
Matches are distributed among these distances:
431 65 0.17
432 220 0.58
433 94 0.25
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.37
Consensus pattern (431 bp):
ATACATGACACTAATGCTTTGATATCGCAAGAAAAGCTTTTCTTTCCACCGATTTTGATAGAATT
CAAGTTTGTCTCTTAAAAAGGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTA
GGCACCACAAACATAATATTCTCATAAGGATACACGATATAGACGCTTTGATTTCACAAGAAAGG
CTTTTATTCCCACAAATTTTTATAAAGTCTAAGTTCGTGCCTCAAATAAGATAAACATAGATTCT
AGTAACGATATTCATTCATTTTGTGACTAGGCACTATAAACACATTCTCCTCATTAGGATAAATG
ATACTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAATCAAAATTCA
TCCCATAAATATCACAAGCTTCGATTCTCGTAACAGTCTCC
Found at i:403743 original size:145 final size:145
Alignment explanation
Indices: 403456--403745 Score: 384
Period size: 145 Copynumber: 2.0 Consensus size: 145
403446 GTCTAAGTTC
* * * * *
403456 GTGCCTCAAATGAGATAAATATGGATTCTAGTAATGATCTTTATTCATTTTGTGATTAGGCACTA
1 GTGCCTCAAATGAGAGAAACATGGACTCTAGTAATGATCTTCATTCATTTTGTCATTAGGCACTA
* * * * * **
403521 TAAATACATTATCCTCATTGGGGAAATGATATTGATGATTTTCTTCTGCATTAAAATCTTTTCTT
66 TAAACACATTATCCTAATTAGGGAAATGATATTAATGATTTTATTCTGCACGAAAATCTTTTCTT
*
403586 TGCCCTCTTTTTCCT
131 TGCCCTCATTTTCCT
* * *
403601 GTGCGTCAAATGAGAGAAACATGTACTCTTGTAATGATCTTCATTCATTTTGTCATTAGGCACTA
1 GTGCCTCAAATGAGAGAAACATGGACTCTAGTAATGATCTTCATTCATTTTGTCATTAGGCACTA
* * * *
403666 TAAACACATTCTCCTAATTAAGGTAAATGATATTAATGATTTTATTTTGCACGGAAATCTTTTCT
66 TAAACACATTATCCTAATT-AGGGAAATGATATTAATGATTTTATTCTGCACGAAAATCTTTTCT
403731 TTGCCCT-ATTTTCCT
130 TTGCCCTCATTTTCCT
403746 TAAATCAAAA
Statistics
Matches: 124, Mismatches: 20, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
145 80 0.65
146 44 0.35
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.41
Consensus pattern (145 bp):
GTGCCTCAAATGAGAGAAACATGGACTCTAGTAATGATCTTCATTCATTTTGTCATTAGGCACTA
TAAACACATTATCCTAATTAGGGAAATGATATTAATGATTTTATTCTGCACGAAAATCTTTTCTT
TGCCCTCATTTTCCT
Found at i:404313 original size:462 final size:459
Alignment explanation
Indices: 403631--404460 Score: 1261
Period size: 462 Copynumber: 1.8 Consensus size: 459
403621 ATGTACTCTT
* *
403631 GTAATGATCTTCATTCATTTTGTCATTAGGCACTATAAACACATTCTCCTAATTAAGGTAAATGA
1 GTAATGATCTTCATTCATTTTGTCATTAGGCACTATAAACACATTCACCTAAGTAAGGTAAATGA
* *
403696 TATTAATGATTTTATTTTGCACGGAAATCTTTTCTTTGCCCTATTTTCCTTAAATCAAAATTCAT
66 TATTAATGATTTTACTTTGCACGGAAATCTTTTCTTTGCCCTATTTTCCTTAAATCAAAATTCAC
* * *
403761 CCCTTAAATATGACAAGCTTTGATTCTCATAACAGTCTCTATTCTTTTCAAGATTGGAAACCTAG
131 CCCGTAAATATGACAAACTTCGATTCTCATAACAGTCTCTATTCTTTTCAAGATTGGAAACCTAG
* * *
403826 AACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATCTTTTCTTT
196 AACACATTCCTTTCATTAAGATACATGACACTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTT
* * * * **
403891 CAATTGATTTTGATAGCATC-TAAGTTTGTCTCCCTAATAAGACAAACGTGAATTGTCATACTGG
261 CAACTGATTTTGATAGAATCAT-AGTTTGTCTCCCTAATAAGACAAACATGAATAGTCATACTAA
* ** *
403955 T-CTCCATTTTTTTTGGGATTAGGCACCTTAAACTTAGGCTTGTTATAAGAATGCATGATGTTGA
325 TAC-CCATTCTTTTCAGGATTAGGCACCATAAACTTAGGC-TGTTATAAGAATGCATGATGTTGA
404019 CGCTTTGGTTTTGCAAGAAAAGCATTTTTCCCACCAATATTTGTAATAATCTAGTAATGATCGTG
388 CGCTTTGGTTTTGCAAGAAAAGCATTTTTCCCACCAATATTTGTAATAATCTAGTAATGATCGTG
404084 GATTCTA
453 GATTCTA
* * * * *
404091 GTAATGATCTTCATTCTTTTTTTGATTAGGCACTATAAACACATTCAGCTCAGT-AGGATAAATG
1 GTAATGATCTTCATTCATTTTGTCATTAGGCACTATAAACACATTCACCTAAGTAAGG-TAAATG
* * * * * *
404155 ATATTGATGATTTTCCTTTGGATGGAAATCTTTTTTTTTGCCTTATTTTCCTTAAAATCAAAATT
65 ATATTAATGATTTTACTTTGCACGGAAATC-TTTTCTTTGCCCTATTTTCCTT-AAATCAAAATT
* *
404220 CACCCCGTAAATATGACAAACTTCGATTCTCGTAACAGTCTCTATTCTTTTCAAGATTGGGAACC
128 CACCCCGTAAATATGACAAACTTCGATTCTCATAACAGTCTCTATTCTTTTCAAGATTGGAAACC
404285 TAGAACACATTCCTTTCATTAAGATACATGACACTGATGCTTTGGTGTCGCAAGAAAAGCTTTTC
193 TAGAACACATTCCTTTCATTAAGATACATGACACTGATGCTTTGGTGTCGCAAGAAAAGCTTTTC
* * *
404350 TTTCAACTGATTTTGATAGAATCATAGTTTGTCTCCTTAATAAGATAAACATGAATAGTCATGCT
258 TTTCAACTGATTTTGATAGAATCATAGTTTGTCTCCCTAATAAGACAAACATGAATAGTCATACT
404415 AATACCCATTCTTTTCAGGATTAGGCACCATAAACTTAGGCTGTTA
323 AATACCCATTCTTTTCAGGATTAGGCACCATAAACTTAGGCTGTTA
404461 GCTCGCGAAA
Statistics
Matches: 329, Mismatches: 36, Indels: 9
0.88 0.10 0.02
Matches are distributed among these distances:
459 3 0.01
460 78 0.24
461 25 0.08
462 221 0.67
463 2 0.01
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.38
Consensus pattern (459 bp):
GTAATGATCTTCATTCATTTTGTCATTAGGCACTATAAACACATTCACCTAAGTAAGGTAAATGA
TATTAATGATTTTACTTTGCACGGAAATCTTTTCTTTGCCCTATTTTCCTTAAATCAAAATTCAC
CCCGTAAATATGACAAACTTCGATTCTCATAACAGTCTCTATTCTTTTCAAGATTGGAAACCTAG
AACACATTCCTTTCATTAAGATACATGACACTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTT
CAACTGATTTTGATAGAATCATAGTTTGTCTCCCTAATAAGACAAACATGAATAGTCATACTAAT
ACCCATTCTTTTCAGGATTAGGCACCATAAACTTAGGCTGTTATAAGAATGCATGATGTTGACGC
TTTGGTTTTGCAAGAAAAGCATTTTTCCCACCAATATTTGTAATAATCTAGTAATGATCGTGGAT
TCTA
Found at i:410095 original size:476 final size:474
Alignment explanation
Indices: 408615--412284 Score: 4462
Period size: 476 Copynumber: 7.8 Consensus size: 474
408605 TGCGTTGTGC
* * * * *
408615 CATTTTGTGATTAGGTACTATAAACATATTCTCCTCATTACGGTAAATGATATTGACGATTTTAT
1 CATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGGTAAATGATATTGATGATTTTCT
* * * * * * *
408680 TTTGCACGAAAATGTTTCCTTTCCCCTATTTTCCTTAAAATCAATGTTCATCCCTCAAATAA-AG
66 TTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGA-
* * * * * * * * *
408744 CGAGCATTGATTCTCATAATAGTCCCCATTCTTCTCAAGATTGGAAACCAAAAATATATTCCATT
130 CAAGCATTGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAA-CGAAAACACATTCCCTT
** * *
408809 CATTAGGATACATGACATTGATGCTGCGGTGTCGCAAGAAAAGCTTTTCTTTTAAACGTTTTTGA
194 CATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGA
* * * * *
408874 TAGAATCAAAGCTTGTTTCTTTAATAAGACAAACATGAATAGTCATACTAATCACCATTTTTTTT
259 TAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCA-TTCTTTT
* **
408939 CAGGATTAGGCACCATAAAAATAGTCTTCTCATAAGGATACACGATATTGACACTTTGGTTTC-C
323 CAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGC
* * * *
409003 GAAGAAAGGCTTTCTTCCCCC-----TTATAATGGCTAAGTTCATGTCTCAAATGAGATAAACAT
388 -AAGAAAGGCTTTCTTCCCCCAATTTTTATAATGTCTAAGTTCGTGCCTCAAATGAGACAAACAT
* * *
409063 GGATTCTAGTATTGATCTTTATC
452 GGATTCTAGTAATGATCTTCATT
409086 CATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGGTAAATGATATTGATGATTTTCT
1 CATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGGTAAATGATATTGATGATTTTCT
* * ** *
409151 TTTGCATGGAAATCTTTTCTTTG-CCTATTTTCCTTAAAATCAAAATTCATACCTTAAATATTAT
66 TTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGAC
* * *
409215 AAGC-TTCGATTCTCATAACAGTCTCCATTCATTTCAAGATTGGGAAAC-AAGAATATATTCCCT
131 AAGCATT-GATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGG-AACGAA-AACACATTCCCT
* * *
409278 TCATTAGGATACATGACATTGATGCTTTGGTATCGCAAG--AAGCATTTCTTTCAACCATTTTTG
193 TCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTG
* *
409341 ATAGAATCTAAA-TTTGACTCTTAAATAAGACAAACATAAATAGTCATACTAATCCCCATTCTTT
258 ATAGAATC-AAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTT
* * * * *
409405 TTAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACCCGATATTGACGTTTTGGTTTTG
322 TCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCG
* * *
409470 CAAG-AAGGCTTTCTTCCCCTAATTTTTATAATGTCTAGGTTCGTGCCTTAAATGAGACAAACAT
387 CAAGAAAGGCTTTCTTCCCCCAATTTTTATAATGTCTAAGTTCGTGCCTCAAATGAGACAAACAT
*
409534 GTG-TTCTAGTAATGATCTTTATT
452 G-GATTCTAGTAATGATCTTCATT
** *
409557 CATTTTGTGATTAGGTGCTATAAACACATTCTCCTCATTAGAGTAAATGATATTGATGATTTTCT
1 CATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGGTAAATGATATTGATGATTTTCT
* * * * *
409622 TTTACAT-GAAATGTTTCCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCACTTAAATAAGGC
66 TTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGAC
* * * *
409686 AAGCATTGATTCTCGTAACAATCTCCATTCTTTTCAAGATTAGGAACTGAAAACACAATCCCTTC
131 AAGCATTGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAC-GAAAACACATTCCCTTC
* * * * *
409751 ATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTATTTCTACTGTTTTGGTT
195 ATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGAT
* * * *
409816 AGAATCAAAGTTTGTCTCCTAAATAAGACAAACACGAATAGTCATACTAATCCCCATTTTTTTTT
260 AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCA-TTCTTTTC
* * * * *
409881 ACGATTAGGCACCATAAACATAGTCTTCTTATAAGGATAAACGATATTGATGCTTTGCTTTCGTA
324 AGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCA
* * * * *
409946 AAAAAGGCTTTCTTCCCACTAATTTTTATAATGTCTAAGTTCGTGCCTTAAATAAGACACACATG
389 AGAAAGGCTTTCTTCCC-CCAATTTTTATAATGTCTAAGTTCGTGCCTCAAATGAGACAAACATG
*
410011 GATTCTAGTAATGATCTTTATT
453 GATTCTAGTAATGATCTTCATT
* * *
410033 TATTTTGTGATTAGGCACTATAAACACATTCTCCTTATTAGGGTAAATGATATTCATGATTTTCT
1 CATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGGTAAATGATATTGATGATTTTCT
* * * *
410098 TTTGCATGGAAATGTTTCCTTTGCCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGGC
66 TTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGAC
** * * *
410163 AAGCATTGATTCTTGTAACAATCTCCATTCTTTTCAAGATTAGGAACTGAAAACACAATCCCTTC
131 AAGCATTGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAC-GAAAACACATTCCCTTC
* ** *
410228 ATTAGGATACATGACATTAATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCGTTTGGGTT
195 ATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGAT
* * * * *
410293 AGAATTAAAGTTTGTGTCTTAAATAAGACAAACAAGAATAGTTATACAAATCCCCATTCTTTTCA
260 AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCA
* * *
410358 GGATTAGGCACCATAAACATAGTCTTCTTATAAGGATACACGATATTGCTGCTTTGGTTTCGTAA
325 GGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAA
* * * * *** **
410423 AAAAGGTTTTCATCCCACCAATTTTTATAATGTCTAAGTTCCTATGTCAAACAAGACAAACATGG
390 GAAAGGCTTTCTTCCC-CCAATTTTTATAATGTCTAAGTTCGTGCCTCAAATGAGACAAACATGG
*
410488 ATTCTGGTAATGATCTTCATT
454 ATTCTAGTAATGATCTTCATT
* *
410509 CATTTTGTGATTAGGTACTATAAACACATTCTCCTCATTAGGGTAAATGATATTGATGATTTTTT
1 CATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGGTAAATGATATTGATGATTTTCT
* * * *
410574 TTTGCAAGGAAATGTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGGC
66 TTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGAC
* ** * * * * *
410639 AAGCATTCATTCTTGTAACAATCTCCACTCATTTCAAGATTGGGAACCAAAA-ACATAATCCCCT
131 AAGCATTGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAACGAAAACACAT--TCCCTT
* * * * *
410703 CATTAGGATACATGGCATTGATTCTTTGGTGTCGCAAGAAAAGCCTTTCTTTCAACCTTTTTTGT
194 CATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGA
* * * *
410768 TAGAATCAAAGTTTGTCTCTTCAATAAGACTAACAAGAATAGTCATACAAAT-CCCATTCTTTTC
259 TAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTC
* *
410832 AGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGACGCTTCGGTTTCGCA
324 AGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCA
* **
410897 AGAAAGGCTTTCTTCTCCCCAATTTTTATAATGTCTAAGTTTGTGCCTCAAAAAAGACAAACATG
389 AGAAAGGCTTTCTTC-CCCCAATTTTTATAATGTCTAAGTTCGTGCCTCAAATGAGACAAACATG
*
410962 GATTCTAGTAACGATCTTCATT
453 GATTCTAGTAATGATCTTCATT
* * * * *
410984 CATTTTGTGATTAGCCACTATAAAAACATTCTACTCATTAGGATAAATGATATTGATGATTTTTT
1 CATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGGTAAATGATATTGATGATTTTCT
* * * * * * *
411049 TTTGCTTGGAAATCTTTTCTTTACCTTATTTTCCTTAAAATCAAAATTCATACATTAAATATGAC
66 TTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGAC
** * * ** * *
411114 AAGTTTTTATTCTCATAACAGCCTCCATTCAGTTCAAGATTGGGAACCAAGAATACATTCCCTTC
131 AAGCATTGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAACGAA-AACACATTCCCTTC
* * * * *
411179 ACTAGGAT---T-ACATTGATGCTTTAGTGTCGCAACAAAAGCTTTTCTTTCAACCATATTTGAT
195 ATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGAT
* * * * * *
411240 AGAATCAAAATTTATCTCTTAAATAAGACAAACATGAATAGTCAAACTGACCCCCATTCTTTTTA
260 AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCA
* * * *
411305 CGATTAGGCACCATAAACATAGTCTTCTCATTAA-GATAGATGATATTGATGCTTTGGTTTCACA
325 GGATTAGGCACCATAAACATAGTCTTCTCA-TAAGGATACACGATATTGATGCTTTGGTTTCGCA
* * * * * *
411369 AGAAAGGCTTTCTTCCTTCCAATTTTTGTAAAGTTTAAGTTTGTGCCTCAAATGAGTCAAACATG
389 AGAAAGGCTTTCTTCC-CCCAATTTTTATAATGTCTAAGTTCGTGCCTCAAATGAGACAAACATG
*
411434 GATTCCAGTAATGATCTTCATT
453 GATTCTAGTAATGATCTTCATT
** * * *
411456 CATTTTGTGATTAAACACTACAAACACATTCTCCTCATTAGGATAAATGATATTGATGATATTCT
1 CATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGGTAAATGATATTGATGATTTTCT
* *
411521 TTTGCATGGAAATCTTTT-TTT--CCTATTTTCCTTAAAATCTAAA-TTCATCCCCTAAATACGA
66 TTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATC-AAAGTTCATCCCTTAAATAAGA
* * ** * *
411582 CAAGCATCGACTCTCATAATGGTCTCTATTCTTTTCAAGATTGGGAAC----ACACATTACCTTC
130 CAAGCATTGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAACGAAAACACATTCCCTTC
* * *
411643 ATTAGGATAGAAGACATTGATGCTTTGGTGT-GTCAAGAAAAAC-TTTCTTTCAACCGTTTTTGA
195 ATTAGGATACATGACATTGATGCTTTGGTGTCG-CAAGAAAAGCTTTTCTTTCAACCGTTTTTGA
* * *
411706 TAGAATTAAA-TTTGCTCTCTTAAATAAGACAACCATGAATAGTCATACTAATCCCCATTCTTTC
259 TAGAATCAAAGTTTG-TCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTT
* * * * * *
411770 CAAGATTAGGCACCATAAACGTAGTCTTCTCGTTAGGATAGACGATATTGATGCTTTGGTATCGC
323 CAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGC
* ** * * * * *
411835 AAGAAAGGCTTT-TGTCTCACCAATTTTGGTAAAGTGTAAGTTTGTGCCTCGAATGAGTCAAACA
388 AAGAAAGGCTTTCT-TC-CCCCAATTTTTATAATGTCTAAGTTCGTGCCTCAAATGAGACAAACA
* *
411899 AGGATTCTAGTAATGGTCTTCATT
451 TGGATTCTAGTAATGATCTTCATT
** * * *
411923 CATTTTGTGATTAGGCGTTATAAACACATTCCCCTCATTAGGATAAATGATATTAATGATTTTCT
1 CATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGGTAAATGATATTGATGATTTTCT
* * * * * *
411988 TTTGGATAGAAATCTTTTCTTTGCCATATTTTCCTTAAAATAAAAATTCATCCCTTAAATATGAC
66 TTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGAC
* * * * * *
412053 AAGCATCGATTCCCATAATAGTCTCCATTCTTTTCAACATTGGGAACCAAGAACACATTTCCTTC
131 AAGCATTGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAACGAA-AACACATTCCCTTC
* * * *
412118 ATTAAGATACATGACATCGATGCTTTGGTGTCGTAAGAAAAGCTTTTCTTT-ACACCGGTTTTGA
195 ATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCA-ACCGTTTTTGA
* * *
412182 TAAAATCAAAGTTTGTCTCTTAAATAAGGCAAACATGAATAGCCA-ACCTAATCCCCATTCTTTT
259 TAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATA-CTAATCCCCATTCTTTT
*** * *
412246 CTCAAGTAGGCACCATAAACATAGTCTTCTTATAAGGAT
323 CAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGAT
412285 TGAGGATACA
Statistics
Matches: 2808, Mismatches: 335, Indels: 107
0.86 0.10 0.03
Matches are distributed among these distances:
464 18 0.01
466 21 0.01
467 342 0.12
468 98 0.03
469 78 0.03
470 210 0.07
471 409 0.15
472 226 0.08
473 70 0.02
474 67 0.02
475 383 0.14
476 649 0.23
477 237 0.08
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (474 bp):
CATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGGTAAATGATATTGATGATTTTCT
TTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGAC
AAGCATTGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAACGAAAACACATTCCCTTCA
TTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGATA
GAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAG
GATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAG
AAAGGCTTTCTTCCCCCAATTTTTATAATGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGAT
TCTAGTAATGATCTTCATT
Found at i:413316 original size:475 final size:474
Alignment explanation
Indices: 412420--414003 Score: 2077
Period size: 476 Copynumber: 3.3 Consensus size: 474
412410 ATATTGATGA
* * * * *
412420 TTTTCATTTGCCCTATATTT-CATAAAATCAAAGTTCATCCTTTTAACAAGGCTAGCGTTGATTC
1 TTTTC-TTTGCCCTAT-TTTCCTTAAAATCAAAGTTCATCC-TTAAATAAGGCAAGCATTGATTC
* * * * * * *
412484 TCGTAACAGTCTCCATTGTTTTCCATATTGGGAACCAAAAACACATTCCCTTAATTAGGATACAT
63 TCATAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCTTTCATTAAGATACAT
* * * * * *
412549 GACATCGATGCTTTAGTGTCGTAAGAAAAGCTTTTCTTTCAATCGTTTTTGTTAGAATCAAAGTT
128 GACATTGATGCTTTAGTGTCGCAAGAAAGGCTTTTCTTTCAACCGTTTTTGTTACATTCAAAGTT
* *
412614 TG-GCTCTTAAATAAGACAAACAAGAATAGTCATACTAATTCCCGTTCTTTTCAGGATTAGGCAC
193 TGTG-TCTTAAATAAGACAAACAAGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCAC
* * ** * *
412678 TATAAACGTAGTATTCGCATTAGGACAAACGATATTAATGCTTCGGATTCGCAAAAAAGGCTTTC
257 CATAAACGTAGTCTTCGCATTAGGACTGACGATATTAATGCTTTGGATTCGTAAAAAAGGCTTTC
*
412743 TTCTCATGAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAAGGAGACAAACAAGGATTCTAGTAAT
322 TTCTCATGAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAACGAGACAAACAAGGATTCTAGTAAT
412808 GATCTTTATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATAATATTG
387 GATCTTTATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATAATATTG
* *
412873 ATGATTTTCTTTGTATAGAAATC
452 ATGATTTTTTTTGTATGGAAATC
* * *
412896 TTTTCTTTGCCCTCTTTCCCTTAAAATCAAAGTTCATCACTTAAATAAGGCAAGCATTGATTCTT
1 TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATC-CTTAAATAAGGCAAGCATTGATTCTC
** * * * *
412961 ATAGTAGTCTCCATTCTTTTCAAGATTGTGAACCAAAACCGCATTCCTTTCGTTAAGATACATGA
65 ATAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCTTTCATTAAGATACATGA
413026 CATTGATGCTTTAGTGTCGCAAGAAAGGCTTTTCTTTCAACCGTTTTTGTTACATTCAAAGTTTG
130 CATTGATGCTTTAGTGTCGCAAGAAAGGCTTTTCTTTCAACCGTTTTTGTTACATTCAAAGTTTG
** * *
413091 TGTCTTAAATAAGACAAACAAGAATTCTCACACTAATCCCCATTCTTTCCAGGATTAGGCACCAT
195 TGTCTTAAATAAGACAAACAAGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCAT
* *
413156 AAACGTAGTCTTCGCATTATGACTGACGATATTAATGTTTTGGATTCGTAAAAAAGGCTTTCTTC
260 AAACGTAGTCTTCGCATTAGGACTGACGATATTAATGCTTTGGATTCGTAAAAAAGGCTTTCTTC
*
413221 TCATGAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAACAAGACAAACAAGGATTCTAGTAATGAT
325 TCATGAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAACGAGACAAACAAGGATTCTAGTAATGAT
* *
413286 CTTTATTCATTTTGCGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATAATATTGATT
390 CTTTATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATAATATTGATG
*
413351 ATTTTTTTTTCTATGGAAATC
455 A-TTTTTTTTGTATGGAAATC
* * * *
413372 TTTTCTTTGCCCTTTTTTTCTTAAAATCAAAGTTCATCCCTAAAGTAAGGTAAGCATTGATTCTC
1 TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCTTAAA-TAAGGCAAGCATTGATTCTC
** * * *
413437 ATAATTGTCTCCATTCTTTTCAAGATTGTGAACCAAAAGCACATTCCTTTCCTTAAGATACATGA
65 ATAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCTTTCATTAAGATACATGA
* * * * *
413502 CATTGATGCTTTGGTGTC-CTAATAAAGGCTTTTCTTTCAACTGTTTTTGTTACTTTCAATGTTT
130 CATTGATGCTTTAGTGTCGC-AAGAAAGGCTTTTCTTTCAACCGTTTTTGTTACATTCAAAGTTT
* * *
413566 GTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAAGATTAGGCACCA
194 GTGTCTTAAATAAGACAAACAAGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCA
* * * * ** * * * * *
413631 TAAACATAATCTTCTCATTAGGA-TAGAAGATATTGCTGCTTTGGTTTCTTAAGAAAGGTTTTTT
259 TAAACGTAGTCTTCGCATTAGGACT-GACGATATTAATGCTTTGGATTCGTAAAAAAGGCTTTCT
* * * * *
413695 TC-CCTCCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGTCAAACATGGATTCTAGTAAT
323 TCTCAT-GAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAACGAGACAAACAAGGATTCTAGTAAT
* * * * * * *
413759 GATCTTCATTCATTTTGTGATTAGGCACAATAAACACATTATCCTCTTTAAGATAAATGATATTA
387 GATCTTTATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATAATATTG
* * *
413824 ACGATTTTATTTTGCATGGAAATG
452 ATGATTTT-TTTTGTATGGAAATC
* * * *
413848 TTTCCTTTGCCCTATTTTCCATAAAATCAAAGTTCATCCCTCAAATATGGCAAGCATTGATTCTC
1 TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCAT-CCTTAAATAAGGCAAGCATTGATTCTC
* * * *
413913 GTAACAGTC-CCTATTCTTCTCAAGATTGGGAACCAAAAACATATTCCCTTT-ATTCAGATACAT
65 ATAACAGTCTCC-ATTCTTTTCAAGATTGGGAACCAAAAACACATT-CCTTTCATTAAGATACAT
*
413976 GACATTGATG-TTGTGGTGTCGCAAGAAA
128 GACATTGATGCTT-TAGTGTCGCAAGAAA
414004 AGTTTGTTTC
Statistics
Matches: 973, Mismatches: 121, Indels: 28
0.87 0.11 0.02
Matches are distributed among these distances:
474 2 0.00
475 416 0.43
476 544 0.56
477 11 0.01
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (474 bp):
TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCTTAAATAAGGCAAGCATTGATTCTCA
TAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCTTTCATTAAGATACATGAC
ATTGATGCTTTAGTGTCGCAAGAAAGGCTTTTCTTTCAACCGTTTTTGTTACATTCAAAGTTTGT
GTCTTAAATAAGACAAACAAGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATA
AACGTAGTCTTCGCATTAGGACTGACGATATTAATGCTTTGGATTCGTAAAAAAGGCTTTCTTCT
CATGAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAACGAGACAAACAAGGATTCTAGTAATGATC
TTTATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATAATATTGATGA
TTTTTTTTGTATGGAAATC
Found at i:413995 original size:476 final size:476
Alignment explanation
Indices: 412420--416810 Score: 4282
Period size: 475 Copynumber: 9.3 Consensus size: 476
412410 ATATTGATGA
* * * * * *
412420 TTTTCATTTGCCCTATATTT-CATAAAATCAAAGTTCATCCTTTTAACAAGGCTAGCGTTGATTC
1 TTTTC-TTTGCCCTAT-TTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTC
* * * *
412484 TCGTAACAGTCTCCATTGTTTTCCATATTGGGAACCAAAAACACATTCCCTTAATTAGGATACAT
64 TCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTTATTAGGATACAT
* * * *
412549 GACATCGATGCTTTAGTGTCGTAAGAAAAGCTTTTCTTTCAATCGTTTTTGTTAGAATCAAAGTT
129 GACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGTTAGAATCAAAGTT
* * * *
412614 TGGCTCTTAAATAAGACAAACAAGAATAGTCATACTAATTCCCGTTCTTTTCAGGATTAGGCACT
194 TGTCTCTTAAATAAGACAAACAAGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACC
* * * * ** * * *
412679 ATAAACGTAGTATTCGCATTAGGACA-AACGATATTAATGCTTCGGATTCGCAAAAAAGGCTTTC
259 ATAAACATAGTCTTCTCATTAGGATAGAA-GATATTGCTGCTTTGGTTTCGCAAGAAAGGCTTTC
* * * *
412743 TTCTCAT-GAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAAGGAGACAAACAAGGATTCTAGTAA
323 TTC-CCTCCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAA
* *
412807 TGATCTTTATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATAATATT
387 TGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATT
* * *
412872 GATGATTTTC-TTTGTATAGAAATC
452 GATGATTTTCTTTTGCATGGAAATG
* * * *
412896 TTTTCTTTGCCCTCTTTCCCTTAAAATCAAAGTTCATCACTTAAATAAGGCAAGCATTGATTCTT
1 TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTC
* ** * * * * *
412961 ATAGTAGTCTCCATTCTTTTCAAGATTGTGAACCAAAACCGCATT-CCTTTCGTTAAGATACATG
66 GTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTT-ATTAGGATACATG
* * * *
413025 ACATTGATGCTTTAGTGTCGCAAGAAAGGCTTTTCTTTCAACCGTTTTTGTTACATTCAAAGTTT
130 ACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGTTAGAATCAAAGTTT
* ** * *
413090 GTGTCTTAAATAAGACAAACAAGAATTCTCACACTAATCCCCATTCTTTCCAGGATTAGGCACCA
195 GTCTCTTAAATAAGACAAACAAGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCA
* * * * ** * * * *
413155 TAAACGTAGTCTTCGCATTATGACT-GACGATATTAATGTTTTGGATTCGTAAAAAAGGCTTTCT
260 TAAACATAGTCTTCTCATTAGGA-TAGAAGATATTGCTGCTTTGGTTTCGCAAGAAAGGCTTTCT
* * ** *
413219 TCTCAT-GAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAACAAGACAAACAAGGATTCTAGTAAT
324 TC-CCTCCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAT
* * *
413283 GATCTTTATTCATTTTGCGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATAATATTG
388 GATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTG
* * *
413348 ATTATTTT-TTTTTCTATGGAAATC
453 ATGATTTTCTTTTGC-ATGGAAATG
* * *
413372 TTTTCTTTGCCCTTTTTTTCTTAAAATCAAAGTTCATCCC-TAAAGTAAGGTAAGCATTGATTCT
1 TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAA-TAAGGCAAGCATTGATTCT
* ** * * * *
413436 CATAATTGTCTCCATTCTTTTCAAGATTGTGAACCAAAAGCACATT-CCTTTCCTTAAGATACAT
65 CGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTT-ATTAGGATACAT
* * * *** *
413500 GACATTGATGCTTTGGTGTC-CTAATAAAGGCTTTTCTTTCAACTGTTTTTGTTACTTTCAATGT
129 GACATTGATGCTTTGGTGTCGC-AAGAAAAGCTTTTCTTTCAACCGTTTTTGTTAGAATCAAAGT
* *
413564 TTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAAGATTAGGCAC
193 TTGTCTCTTAAATAAGACAAACAAGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCAC
* ** * *
413629 CATAAACATAATCTTCTCATTAGGATAGAAGATATTGCTGCTTTGGTTTCTTAAGAAAGGTTTTT
258 CATAAACATAGTCTTCTCATTAGGATAGAAGATATTGCTGCTTTGGTTTCGCAAGAAAGGCTTTC
*
413694 TTCCCTCCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGTCAAACATGGATTCTAGTAAT
323 TTCCCTCCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAT
* * * * *
413759 GATCTTCATTCATTTTGTGATTAGGCACAATAAACACATTATCCTCTTTAAGATAAATGATATTA
388 GATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTG
* *
413824 ACGATTTTATTTTGCATGGAAATG
453 ATGATTTTCTTTTGCATGGAAATG
* * * *
413848 TTTCCTTTGCCCTATTTTCCATAAAATCAAAGTTCATCCCTCAAATATGGCAAGCATTGATTCTC
1 TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTC
* *
413913 GTAACAGTC-CCTATTCTTCTCAAGATTGGGAACCAAAAACATATTCCCTTTATTCA-GATACAT
66 GTAACAGTCTCC-ATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTTATT-AGGATACAT
* ** *
413976 GACATTGATG-TTGTGGTGTCGCAAGAAAAG--TTTGTTT----C--TTTACTAAGAAT-AACAT
129 GACATTGATGCTT-TGGTGTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGTTAGAATCAA-A-
* * * ** *** * * * * * ** * *
414031 GAATAGTCATAC-T-AATCCCCATTCTTTTCAGGATTAGGCA-CCATAA-ACGAAGTCTTCTC--
191 G-TTTGTC-T-CTTAAAT---AAGAC-AAACAAGAATAGTCATAC-TAATCCCCATTCTTTTCAG
* * * * * *
414090 -ATTAGG----ATAGAAGATATTGTTGCT--TT-GGTTTCACAA-A-AAT-C-GCTTT--TTTC-
248 GATTAGGCACCATA-AACATAGTCTT-CTCATTAGG-AT-AGAAGATATTGCTGCTTTGGTTTCG
**** * * * * * * ** * *
414140 CCTCCAA---TTT-TT--GT-AAAGTCTATGT----TC--A-TGCCTCGAAT--TA---GTCAAA
309 CAAGAAAGGCTTTCTTCCCTCCAA-TTTTTGTAAAGTCTAAGTTCGT-GCCTCAAATGAGACAAA
* * * * * *
414186 CATGGATTCTAGTAATGATCTTCTTTCTTTTTTTGACTAGGCACTATAAACAAATTCTCCTCTTT
372 CATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATT
* * *
414251 AGGATAAATGATATTGATGGTTTTCTTTTGGATGGAAATC
437 AGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATG
* * * ** *
414291 TTTTCTTTGCCCTATTTTTCTTAAAATCAAAATTCATCCCATAAATATAATC-AGCA-TCATTCT
1 TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATA-AGGCAAGCATTGATTCT
* * * * * * *
414354 CATAA-AGGTCTCCATTCTTTTTATGATTGAGAGCCAAGAACACATT-GCTTTCATTAGGATACA
65 CGTAACA-GTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTT-ATTAGGATACA
* * *
414417 TGACATTGATGCTTTGGTGTCGCATGAAAAGCTTTTCTTT-ACACCAG-TTTTGATAAAATCAAA
128 TGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCA-ACC-GTTTTTGTTAGAATCAAA
* * * * ** *
414480 GTTTGTCTCTTAAATAAGACAAATATA-AATAGTCATACAAAT-CCTA-CCTTTTCCCGAGTAGG
191 GTTTGTCTCTTAAATAAGACAAACA-AGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGG
* * * * * *
414542 CACCATAAACATAATTTTCTTATAAGGAT-GCACGATATTGAC-ACTTTGGTTTCGCAAGAAAGG
255 CACCATAAACATAGTCTTCTCATTAGGATAG-AAGATATTG-CTGCTTTGGTTTCGCAAGAAAGG
** * * * *
414605 CTTTCTTCTATCCAATTTTTATAATGTCTAAGTTCATGCCTCAAATGAGACAAACATAGATTCTA
318 CTTTCTTCCCTCCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTA
** * *
414670 GTAATGATCTTCATTCATTTTGTGATTAGGCACTCCAAACACATTCT-CTCCATTAGGGTAAACG
383 GTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCT-CATTAGGATAAATG
* *
414734 ATATTGATGATTTTTTTTTGCATGAAAATG
447 ATATTGATGATTTTCTTTTGCATGGAAATG
** * *
414764 -TTTCTTTTGCCCTATTTTCCTTAAAATTGAAGTTCATCCATTTAATAAGGCAAGCATTGATTCT
1 TTTTC-TTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCT
* * *
414828 CGTAACAGTTTCCATTCTTTTCAAGATTAGGAACCAAAAACACATT-ACTTTCATTAGGATACAT
65 CGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTT-ATTAGGATACAT
* * * * * *
414892 GAGATTGATTCTTTAGTGCCGCAAGAAAAGCTTTTCTTTCAACCGTTTCTGTAAGAATCAAAGTT
129 GACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGTTAGAATCAAAGTT
*
414957 TGTCTCTTAAATAAGAC-AACAAGAATAGTCATACTAATCCCTATTCTTTTCAGGATTAGGCACC
194 TGTCTCTTAAATAAGACAAACAAGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACC
* * * * ** * * * * *
415021 ATAAACGTAGTCTTCGCATTAGGATAGATGATACTAATGCTTTGGATTCACAAAAAAAGCTTTCC
259 ATAAACATAGTCTTCTCATTAGGATAGAAGATATTGCTGCTTTGGTTTCGCAAGAAAGGCTTTCT
* * * * * * *
415086 TCTCACGAATTTTTGTAAAGTCTAGGTTCGTGCCTCAAAGGAGATAAACAAGGATTCTAGTAATG
324 TCCCTCCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATG
* *
415151 ATCTTCATTCTTTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATAATATTGA
389 ATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGA
* *
415216 TGATTTTCTTTTGAATGGAAATC
454 TGATTTTCTTTTGCATGGAAATG
* * * * *
415239 TTTTCTTTGCCCTCTTTCCCTTAAAATCAATGTTCATCCCTTAAATAAAGCAAGCAATGATTCTC
1 TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTC
* * * ** * *
415304 ATAATAGTCTCCATTCTTTTCAAGATTGTGAACC-AAAACTACATTCCCTTCGTTAAGATACATA
66 GTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAAC-ACATTCCCTTTATTAGGATACATG
* * * * * *
415368 ACGTTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTTAACCATTTTTGTTACATTTAAAGTTT
130 ACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGTTAGAATCAAAGTTT
* * * * *
415433 ATCTCTTAAATAGGACAAACAAGAATAGTCATCCCAATCCCCATTCTTTTTAGGATTAGGCACCA
195 GTCTCTTAAATAAGACAAACAAGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCA
* ** ** *
415498 TAAACATAATCTTCTCATTAGGATAGAAGATATTGCTAATTTGGTTTCGCAAGAAACACTTTTTT
260 TAAACATAGTCTTCTCATTAGGATAGAAGATATTGCTGCTTTGGTTTCGCAAGAAAGGCTTTCTT
* * * *
415563 CCCTCCAATTTTTGCAAAGTCTAAGTTCGTGCCTCAAATGAGTCAAACATGGATTCCAGCAATGA
325 CCCTCCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGA
* * *
415628 TCTTCATTCATTTTTTGATTAGGCACTATGAACACATTCTCCTCTTTAGGATAAATGATATTGAT
390 TCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGAT
* *
415693 GATTTTATTTTGCATGGAATTG
455 GATTTTCTTTTGCATGGAAATG
* * * * * *
415715 -TTTCTTTTGCCCTATTTTCCATAAAATCAAAGTTCTTTCCTCAAATAA-GCGACCATTGATTCT
1 TTTTC-TTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCT
* *
415778 CGTAACAGT-TCCCATTCTTCTCAAGATTGGGAACCAAAAACATATTCCCTTTATTAGGATACAT
65 CGTAACAGTCT-CCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTTATTAGGATACAT
* * * * *
415842 GACATTGATGGTGTGGTGTCGCAAGAAAAGCTTTTATTTCAACCGTTTTGGTTAGAATCAAAATT
129 GACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGTTAGAATCAAAGTT
* *
415907 TTTCTCTTAAATAAGACAAACAAGAATAGTCATACTAATCCCCATTCCTTTCAGGATTAGGCACC
194 TGTCTCTTAAATAAGACAAACAAGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACC
* * * * * * * * *
415972 ATAAACATAGTTTTCTTATAAGGATACACGATATTCCTACTTTGGTCTCGTAAGAAAGGCTTTCT
259 ATAAACATAGTCTTCTCATTAGGATAGAAGATATTGCTGCTTTGGTTTCGCAAGAAAGGCTTTCT
* * ** * **** * *
416037 TCTCGCCAATTTTCATAATA-TCTAAGTTCCTATGGCAAATAAGACAAACATGGATTCTGGTAAT
324 TCCCTCCAATTTTTGTAA-AGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAT
* * * * * * * *
416101 GATCTTTATTAATTTTGTGATTAGGCACTATAAACACATTTTCTTTATTAGGGTAAACGATACTG
388 GATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTG
* *
416166 ATGATTTTCTTTTGTAAGGAAATG
453 ATGATTTTCTTTTGCATGGAAATG
* *
416190 TTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTT
1 TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTC
* * * * * * * * * *
416255 GTAATAATCTCTACTCATTTCAAGATTAGGAACTAAAAACACAATCCCCTCATTAGGATACATGA
66 GTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTTATTAGGATACATGA
* *
416320 CATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCTTTTTTGTTAGAATCAAAGCTTG
131 CATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGTTAGAATCAAAGTTTG
* * * *
416385 TCTCTTCAATAAGACAAAAAAGAATAGTCATAC-AGAT-CCTATTCTTTTTAGGATTAGGCACCA
196 TCTCTTAAATAAGACAAACAAGAATAGTCATACTA-ATCCCCATTCTTTTCAGGATTAGGCACCA
* * * *
416448 TAAACATAGTCTTCTCATAAGGATACATGATATTGAC-GCTTTGGTTTCGCAA-AAAGGCTTTTT
260 TAAACATAGTCTTCTCATTAGGATAGAAGATATTG-CTGCTTTGGTTTCGCAAGAAAGGCTTTCT
* * * * * ** * * * *
416511 TCCCCCCAA-TTTTATAATGTTTAACTTCGTGCCTCAAAAAAGACAAATAAGGATTCTAGTGACG
324 TCCCTCCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATG
* *
416575 ATCTTCATTCATTTTATGATTAGGCACTATAAGA-ACATTCTACTCATTAGGATAAATGATATTG
389 ATCTTCATTCATTTTGTGATTAGGCACTATAA-ACACATTCTCCTCATTAGGATAAATGATATTG
* *
416639 ATGATTTTTTTTTGCTTGGAAATG
453 ATGATTTTCTTTTGCATGGAAATG
* * * * * * *
416663 TTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATACATTGAATATGACAAG-TTTCGATTCT
1 TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATT-GATTCT
* * * * ** * * * *
416727 CATAATAGCCTCCATTCATTTCAAGATTGGGAATTAAGAATACATTCCCTTCATTAGGATACAAG
65 CGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTTATTAGGATACATG
*
416792 ACATTGATGCTTTAGTGTC
130 ACATTGATGCTTTGGTGTC
416811 AAAATTTATC
Statistics
Matches: 3212, Mismatches: 584, Indels: 241
0.80 0.14 0.06
Matches are distributed among these distances:
441 6 0.00
442 75 0.02
443 151 0.05
444 18 0.01
445 3 0.00
446 7 0.00
447 5 0.00
448 13 0.00
449 10 0.00
450 16 0.00
451 6 0.00
453 7 0.00
454 6 0.00
455 4 0.00
456 5 0.00
457 3 0.00
459 3 0.00
460 4 0.00
461 4 0.00
462 5 0.00
463 7 0.00
464 1 0.00
465 4 0.00
466 9 0.00
467 13 0.00
468 11 0.00
469 4 0.00
470 14 0.00
471 2 0.00
472 12 0.00
473 393 0.12
474 180 0.06
475 1220 0.38
476 975 0.30
477 16 0.00
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (476 bp):
TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTC
GTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTTATTAGGATACATGA
CATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGTTAGAATCAAAGTTTG
TCTCTTAAATAAGACAAACAAGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCAT
AAACATAGTCTTCTCATTAGGATAGAAGATATTGCTGCTTTGGTTTCGCAAGAAAGGCTTTCTTC
CCTCCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGAT
CTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATG
ATTTTCTTTTGCATGGAAATG
Found at i:415965 original size:951 final size:942
Alignment explanation
Indices: 412420--425120 Score: 10623
Period size: 951 Copynumber: 13.5 Consensus size: 942
412410 ATATTGATGA
* * * * * * **
412420 TTTTCATTTGCCCTATATTT-CATAAAATCAAAGTTCATCCTTTTAACAAGGCTAGCGTTGATTC
1 TTTTC-TTTGCCCTAT-TTTCCTTAAAATCAAAGTTCATCCCTTAAATAAAGCAAGCAATGATTC
* * * * * *
412484 TCGTAACAGTCTCCATTGTTTTCCATATTGGGAACCAAAAACACATTCCCTTAATTAGGATACAT
64 TCATAATAGTCTCCATTCTTTTCAAGATT-GGAACC-AAAACACATTCCCTTCATTAGGATACAT
* * * * * * *
412549 GACATCGATGCTTTAGTGTCGTAAGAAAAGCTTTTCTTTCAATCGTTTTTGTTAGAATCAAAGTT
127 GACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTTAACCATTTTTGTTAAAATCAAAGTT
* * * ** * *
412614 TGGCTCTTAAATAAGACAAACAAGAATAGTCATACTAATTCCCGTTCTTTTCAGGATTAGGCACT
192 TGTCTCTTAAATAAGACAAAAAAGAATAGTCAT-CCAA-TCCTATTCTTTTTAGGATTAGGCACC
* * * * * * * ** * * * *
412679 ATAAACGTAGTATTCGCATTAGGACA-AACGATATTAATGCTTCGGATTCGCAAAAAAGGCTTTC
255 ATAAACATAATCTTCTCATAAGGATAGAA-GATATTGACACTTTGGTTTCGCAAGAAAGGCTTTT
* * * * *
412743 TTCTCAT-GAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAAGGAGACAAACAAGGATTCTAGTAA
319 TTC-CCTCCAA-TTTT-TAATGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAA
* * *
412807 TGATCTTTATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATAATATT
381 TGATCTTCATTCATTTTATGATTAGGCACTAT-AACACATTCT-CTCATTAGGATAAATGATATT
* * * * * *
412872 GATGA-TTTTCTTTGTATAGAAATCTTT-TCTTTGCCCTCTTTCCCTTAAAATCAAAGTTCAT-C
444 GATGATTTTTTTTTGCATGGAAATGTTTCT-TTTGCCCTATTTTCCTTAAAATCAAAGTTCATCC
* * ** ** *
412934 ACTTAAATAAGGCAAGCATTGATTCTTATAGTAG-TCTCCATTCTTTTCAAGATT-GTGAACCAA
508 A-TCAAATAAGGCAACCATTGATTCTCGTAACAGTTC-CCATTCTTCTCAAGATTAG-GAACCAA
* * * * * * * * *
412997 AACCGCATTCCTTTCGTTAAGATACATGACATTGATGCTTTAGTGTCGCAAGAAAGGCTTTTCTT
570 AAACACATTACTTTCATTAGGATACATGACATTGATGCTGTAGTGCCGCAAGAAAAGCTTTTATT
* * * * * * ** *
413062 TCAACCGTTTTTGTTACATTCAAAGTTTGTGTCTTAAATAAGACAAACAAGAATTCTCACACTAA
635 TCAACCGTTTCTGTAAGAATCAAAATTTGTCTCTTAAATAAGAC-AACAAGAATAGTCATACTAA
* * * *
413127 TCCCCATTCTTTCCAGGATTAGGCACCATAAACGTAGTCTTCGCATTATGACT-GACGATATTAA
699 TCCCCATTCTTTTCAGGATTAGGCACCATAAACGTAGTCTTCTCATTAGGA-TAGAAGATATTAA
* ** * ** *
413191 TGTTTTGGATTCGTAAAAAAGGCTTTCTTCTCATGAATTTTTGTAAAGTCTAAGTTCGTGCCTCA
763 TGCTTTGG-TTCACAAAAAAAGCTTTCTTCTCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCA
* * * * * *
413256 AACAAGACAAACAAGGATTCTAGTAATGATCTTTATTCATTTTGCGATTAGGCACTATAAACACA
827 AATAAGATAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGGCACTATAAACACA
* * * **
413321 TTCTCCTCATTAGGATAAATAATATTGATTATTTTTTTTTCTATGGAAATC
892 TTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGAATGGAAATC
* * * * *
413372 TTTTCTTTGCCCTTTTTTTCTTAAAATCAAAGTTCATCCC-TAAAGTAAGGTAAGCATTGATTCT
1 TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAA-TAAAGCAAGCAATGATTCT
* * * *
413436 CATAATTGTCTCCATTCTTTTCAAGATTGTGAACCAAAAGCACATTCCTTTCCTTAAGATACATG
65 CATAATAGTCTCCATTCTTTTCAAGATTG-GAACCAAAA-CACATTCCCTTCATTAGGATACATG
* * * ** *** *
413501 ACATTGATGCTTTGGTGTC-CTAATAAAGGCTTTTCTTTCAACTGTTTTTGTTACTTTCAATGTT
128 ACATTGATGCTTTGGTGTCGC-AAGAAAAGCTTTTCTTTTAACCATTTTTGTTAAAATCAAAGTT
* * * * * *
413565 TGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAAGATTAGGCACC
192 TGTCTCTTAAATAAGACAAAAAAGAATAGTCAT-CCAAT-CCTATTCTTTTTAGGATTAGGCACC
* * ** *
413630 ATAAACATAATCTTCTCATTAGGATAGAAGATATTG-CTGCTTTGGTTTCTTAAGAAAGGTTTTT
255 ATAAACATAATCTTCTCATAAGGATAGAAGATATTGAC-ACTTTGGTTTCGCAAGAAAGGCTTTT
* *
413694 TTCCCTCCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGTCAAACATGGATTCTAGTAAT
319 TTCCCTCCAA-TTTT-TAATGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAT
* * * * * *
413759 GATCTTCATTCATTTTGTGATTAGGCACAATAAACACATTATCCTCTTTAAGATAAATGATATTA
382 GATCTTCATTCATTTTATGATTAGGCACTAT-AACACATTCT-CTCATTAGGATAAATGATATTG
* * * * *
413824 ACGATTTTATTTTGCATGGAAATGTTTCCTTTGCCCTATTTTCCATAAAATCAAAGTTCATCCCT
445 ATGATTTTTTTTTGCATGGAAATGTTTCTTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCAT
* * *
413889 CAAATATGGCAAGCATTGATTCTCGTAACAG-TCCCTATTCTTCTCAAGATTGGGAACCAAAAAC
510 CAAATAAGGCAACCATTGATTCTCGTAACAGTTCCC-ATTCTTCTCAAGATTAGGAACCAAAAAC
* * * * * *
413953 ATATTCCCTTT-ATTCA-GATACATGACATTGATGTTGTGGTGTCGCAAGAAAAG--TTTGTTT-
574 ACATT-ACTTTCATT-AGGATACATGACATTGATGCTGTAGTGCCGCAAGAAAAGCTTTTATTTC
414013 ---C-TTTAC--TAAGAAT---AA-------C----AT----------GAATAGTCATACTAATC
637 AACCGTTT-CTGTAAGAATCAAAATTTGTCTCTTAAATAAGACAACAAGAATAGTCATACTAATC
* **
414048 CCCATTCTTTTCAGGATTAGGCACCATAAACGAAGTCTTCTCATTAGGATAGAAGATATTGTTGC
701 CCCATTCTTTTCAGGATTAGGCACCATAAACGTAGTCTTCTCATTAGGATAGAAGATATTAATGC
** * * * * *
414113 TTTGGTTTCACAAAAATCGCTTTTTTCCCTCCAATTTTTGTAAAGTCTATGTTCATGCCTCGAAT
766 TTTGG-TTCACAAAAAAAGCTTTCTTCTCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAAT
* * * * *
414178 TAG-TCAAACATGGATTCTAGTAATGATCTTCTTTCTTTTTTTGACTAGGCACTATAAACAAATT
830 AAGAT-AAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGGCACTATAAACACATT
* * *
414242 CTCCTCTTTAGGATAAATGATATTGATGGTTTTCTTTTGGATGGAAATC
894 CTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGAATGGAAATC
* * * * *
414291 TTTTCTTTGCCCTATTTTTCTTAAAATCAAAATTCATCCCATAAATATAATC-AGC-ATCATTCT
1 TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATA-AAGCAAGCAATGATTCT
* * * * *
414354 CATAA-AGGTCTCCATTCTTTTTATGATTGAGAGCCAAGAACACATTGCTTTCATTAGGATACAT
65 CATAATA-GTCTCCATTCTTTTCAAGATTG-GAACCAA-AACACATTCCCTTCATTAGGATACAT
* * *
414418 GACATTGATGCTTTGGTGTCGCATGAAAAGCTTTTC-TTTACACCAGTTTTGATAAAATCAAAGT
127 GACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTTA-ACCATTTTTGTTAAAATCAAAGT
* * * *** *
414482 TTGTCTCTTAAATAAGACAAATATA-AATAGTCATACAAATCCTA-CCTTTTCCCGAGTAGGCAC
191 TTGTCTCTTAAATAAGACAAA-AAAGAATAGTCAT-CCAATCCTATTCTTTTTAGGATTAGGCAC
* * *
414545 CATAAACATAATTTTCTTATAAGGAT-GCACGATATTGACACTTTGGTTTCGCAAGAAAGGCTTT
254 CATAAACATAATCTTCTCATAAGGATAG-AAGATATTGACACTTTGGTTTCGCAAGAAAGGCTTT
* ** * *
414609 CTTCTATCCAATTTTTATAATGTCTAAGTTCATGCCTCAAATGAGACAAACATAGATTCTAGTAA
318 TTTCCCTCCAA-TTTT-TAATGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAA
* * *
414674 TGATCTTCATTCATTTTGTGATTAGGCACTCCA-AACACATTCTCTCCATTAGGGTAAACGATAT
381 TGATCTTCATTCATTTTATGATTAGGCACT--ATAACACATTCTCT-CATTAGGATAAATGATAT
* **
414738 TGATGATTTTTTTTTGCATGAAAATGTTTCTTTTGCCCTATTTTCCTTAAAATTGAAGTTCATCC
443 TGATGATTTTTTTTTGCATGGAAATGTTTCTTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCC
** * * *
414803 ATTTAATAAGGCAAGCATTGATTCTCGTAACAGTTTCCATTCTTTTCAAGATTAGGAACCAAAAA
508 ATCAAATAAGGCAACCATTGATTCTCGTAACAGTTCCCATTCTTCTCAAGATTAGGAACCAAAAA
* * * *
414868 CACATTACTTTCATTAGGATACATGAGATTGATTCTTTAGTGCCGCAAGAAAAGCTTTTCTTTCA
573 CACATTACTTTCATTAGGATACATGACATTGATGCTGTAGTGCCGCAAGAAAAGCTTTTATTTCA
*
414933 ACCGTTTCTGTAAGAATCAAAGTTTGTCTCTTAAATAAGACAACAAGAATAGTCATACTAATCCC
638 ACCGTTTCTGTAAGAATCAAAATTTGTCTCTTAAATAAGACAACAAGAATAGTCATACTAATCCC
* * * *
414998 TATTCTTTTCAGGATTAGGCACCATAAACGTAGTCTTCGCATTAGGATAGATGATACTAATGCTT
703 CATTCTTTTCAGGATTAGGCACCATAAACGTAGTCTTCTCATTAGGATAGAAGATATTAATGCTT
* * * * **
415063 TGGATTCACAAAAAAAGCTTTCCTCTCACGAATTTTTGTAAAGTCTAGGTTCGTGCCTCAAAGGA
768 TGG-TTCACAAAAAAAGCTTTCTTCTCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATAA
*
415128 GATAAACAAGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGGCACTATAAACACATTCTC
832 GATAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGGCACTATAAACACATTCTC
*
415193 CTCATTAGGATAAATAATATTGATGATTTTCTTTTGAATGGAAATC
897 CTCATTAGGATAAATGATATTGATGATTTTCTTTTGAATGGAAATC
* * *
415239 TTTTCTTTGCCCTCTTTCCCTTAAAATCAATGTTCATCCCTTAAATAAAGCAAGCAATGATTCTC
1 TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAAGCAAGCAATGATTCTC
* * *
415304 ATAATAGTCTCCATTCTTTTCAAGATTGTGAACCAAAACTACATTCCCTTCGTTAAGATACATAA
66 ATAATAGTCTCCATTCTTTTCAAGATTG-GAACCAAAAC-ACATTCCCTTCATTAGGATACATGA
* * * * *
415369 CGTTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTTAACCATTTTTGTTACATTTAAAGTTTA
129 CATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTTAACCATTTTTGTTAAAATCAAAGTTTG
* * *
415434 TCTCTTAAATAGGACAAACAAGAATAGTCATCCCAATCCCCATTCTTTTTAGGATTAGGCACCAT
194 TCTCTTAAATAAGACAAAAAAGAATAGTCAT-CCAAT-CCTATTCTTTTTAGGATTAGGCACCAT
* * **
415499 AAACATAATCTTCTCATTAGGATAGAAGATATTG-CTAATTTGGTTTCGCAAGAAACACTTTTTT
257 AAACATAATCTTCTCATAAGGATAGAAGATATTGAC-ACTTTGGTTTCGCAAGAAAGGCTTTTTT
* * * *
415563 CCCTCCAATTTTTGCAAAGTCTAAGTTCGTGCCTCAAATGAGTCAAACATGGATTCCAGCAATGA
321 CCCTCCAATTTTT--AATGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGA
* *
415628 TCTTCATTCATTTTTTGATTAGGCACTATGAACACATTCTCCTCTTTAGGATAAATGATATTGAT
384 TCTTCATTCATTTTATGATTAGGCACTAT-AACACATTCT-CTCATTAGGATAAATGATATTGAT
* * * *
415693 GATTTTATTTTGCATGGAATTGTTTCTTTTGCCCTATTTTCCATAAAATCAAAGTTCTTTCC-TC
447 GATTTTTTTTTGCATGGAAATGTTTCTTTTGCCCTATTTTCCTTAAAATCAAAGTTC-ATCCATC
* * *
415757 AAATAA-GCGACCATTGATTCTCGTAACAGTTCCCATTCTTCTCAAGATTGGGAACCAAAAACAT
511 AAATAAGGCAACCATTGATTCTCGTAACAGTTCCCATTCTTCTCAAGATTAGGAACCAAAAACAC
* * * *
415821 ATTCCCTTT-ATTAGGATACATGACATTGATGGTGTGGTGTCGCAAGAAAAGCTTTTATTTCAAC
576 ATT-ACTTTCATTAGGATACATGACATTGATGCTGTAGTGCCGCAAGAAAAGCTTTTATTTCAAC
* *
415885 CGTTT-TGGTTAGAATCAAAATTTTTCTCTTAAATAAGACAAACAAGAATAGTCATACTAATCCC
640 CGTTTCT-GTAAGAATCAAAATTTGTCTCTTAAATAAGAC-AACAAGAATAGTCATACTAATCCC
* * * * * * * ** *
415949 CATTCCTTTCAGGATTAGGCACCATAAACATAGTTTTCTTATAAGGATACACGATATTCCTACTT
703 CATTCTTTTCAGGATTAGGCACCATAAACGTAGTCTTCTCATTAGGATAGAAGATATTAATGCTT
** * * * ** *
416014 TGGTCTCGTAAGAAAGGCTTTCTTCTCGCCAATTTTCATAATA-TCTAAGTTCCTATG--GCAAA
768 TGGT-TCACAAAAAAAGCTTTCTTCTCACCAATTTTTGTAA-AGTCTAAGTT-C-ATGCCTCAAA
* * * **
416076 TAAGACAAACATGGATTCTGGTAATGATCTTTATTAATTTTGTGATTAGGCACTATAAACACATT
829 TAAGATAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGGCACTATAAACACATT
* * * * * * *
416141 TTCTTTATTAGGGTAAACGATACTGATGATTTTCTTTTGTAA-GGAAATG
894 CTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTG-AATGGAAATC
* * * *
416190 TTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTT
1 TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAAGCAAGCAATGATTCTC
* * * * * * * *
416255 GTAATAATCTCTACTCATTTCAAGATTAGGAACTAAAAACACAATCCCCTCATTAGGATACATGA
66 ATAATAGTCTCCATTCTTTTCAAGATT-GGAAC-CAAAACACATTCCCTTCATTAGGATACATGA
* * * *
416320 CATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCTTTTTTGTTAGAATCAAAGCTTG
129 CATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTTAACCATTTTTGTTAAAATCAAAGTTTG
* *
416385 TCTCTTCAATAAGACAAAAAAGAATAGTCATACAGATCCTATTCTTTTTAGGATTAGGCACCATA
194 TCTCTTAAATAAGACAAAAAAGAATAGTCATCCA-ATCCTATTCTTTTTAGGATTAGGCACCATA
* * * *
416450 AACATAGTCTTCTCATAAGGATACATGATATTGACGCTTTGGTTTCGCAA-AAAGGCTTTTTTCC
258 AACATAATCTTCTCATAAGGATAGAAGATATTGACACTTTGGTTTCGCAAGAAAGGCTTTTTTCC
* * * ** * * * *
416514 CCCCAATTTTATAATGTTTAACTTCGTGCCTCAAAAAAGACAAATAAGGATTCTAGTGACGATCT
323 CTCCAATTTT-TAATGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCT
*
416579 TCATTCATTTTATGATTAGGCACTATAAGAACATTCTACTCATTAGGATAAATGATATTGATGAT
387 TCATTCATTTTATGATTAGGCACTATAA-CACATTCT-CTCATTAGGATAAATGATATTGATGAT
* * * **
416644 TTTTTTTTGCTTGGAAATGTTT-TCTTTGCCCTATTTTCCTTAAAATCAAAATTCATACATTGAA
450 TTTTTTTTGCATGGAAATGTTTCT-TTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCATCAAA
* * ** * * * * ** * *
416708 TATGACAA-GTTTCGATTCTCATAATAG-CCTCCATTCATT-TCAAGATTGGGAATTAAGAATAC
514 TAAGGCAACCATT-GATTCTCGTAACAGTTC-CCATTC-TTCTCAAGATTAGGAACCAAAAACAC
* * * * *
416770 ATTCCCTTCATTAGGATACAAGACATTGATGCTTTAGTG--TC---AAAA---TTTA--T----C
576 ATTACTTTCATTAGGATACATGACATTGATGCTGTAGTGCCGCAAGAAAAGCTTTTATTTCAACC
* *
416821 --TT-T-T-A-AAT---AA---G--AC--AAAT--------ATGAATAGTCATACTAA-CCCTCA
641 GTTTCTGTAAGAATCAAAATTTGTCTCTTAAATAAGACAACAAGAATAGTCATACTAATCCC-CA
* * * * *
416861 TTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCGTTAGGATAGATGATATTGATGCTTTG
705 TTCTTTTCAGGATTAGGCACCATAAACGTAGTCTTCTCATTAGGATAGAAGATATTAATGCTTTG
* * * * * ** *
416926 GTTTCACAAGAAAGGCTTTCCTC-CTTCCAGTTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAG
770 G-TTCACAAAAAAAGCTTTCTTCTC-ACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATAAG
* * **
416990 TTAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAAACACTATAAACACATTCTCC
833 ATAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGGCACTATAAACACATTCTCC
* * *
417055 GT-ATTAGGGTAAATGATATTGATGATTTT-TTTTGCATGAAAATCC
898 -TCATTAGGATAAATGATATTGATGATTTTCTTTTGAATGGAAAT-C
* * *
417100 TTTT-TTT---CTATTTTCCTTAAAATCTAAA-TTCATCCCCTAAAT-ACGACAAGC-ATCGACT
1 TTTTCTTTGCCCTATTTTCCTTAAAATC-AAAGTTCATCCCTTAAATAAAG-CAAGCAAT-GATT
* * * * *
417158 CTAATAATAGTCTCTATTCTTTTCAAGATTGGGAA-C---ACACATTACCTTCATTAGGATAAAA
63 CTCATAATAGTCTCCATTCTTTTCAAGATT-GGAACCAAAACACATTCCCTTCATTAGGATACAT
* * * * * *
417219 GACATTGATGCTTTGGTGTGGCAAGAAAAAC-TTTCTTTCAACCGTTTTT-TATAGAATTAAA-T
127 GACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTTAACCATTTTTGT-TAAAATCAAAGT
* ** * * *
417281 TTCCTCTCTTAAATAAGACAACCATGAATAGTCATACTAATGCCCATTCTTTTTAGGATTAGGCA
191 TT-GTCTCTTAAATAAGACAAAAAAGAATAGTCAT-CCAAT-CCTATTCTTTTTAGGATTAGGCA
* * * * * ** *
417346 CCA-AAACATAGTCTTCTCGTTAGCATAGACGATATTGATGCTTTGGTATCGCAAGAAAGGCTTT
253 CCATAAACATAATCTTCTCATAAGGATAGAAGATATTGACACTTTGGTTTCGCAAGAAAGGCTTT
* * * * * * * * * *
417410 TGTCTCACCAATTTTGGTAAAGTGTAAGTTTGTGCCTCGAATGAGTCAAACAAGGATTCTAATAA
318 TTTCCCTCCAATTTT--TAATGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAA
*
417475 TGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATT
381 TGATCTTCATTCATTTTATGATTAGGCACTAT-AACACATTCT-CTCATTAGGATAAATGATATT
* * * * * * *
417540 GATGATTTTCTTTTGGATAGAAATCTTT-TCTTTGCCATATTTTCCTTAAAATAAAAATTCATCC
444 GATGATTTTTTTTTGCATGGAAATGTTTCT-TTTGCCCTATTTTCCTTAAAATCAAAGTTCATCC
* * * * ** * * * * * * * *
417604 CTTAAATATGACAGGCATGGATTCTCATAACAG-TCTCTATTATTTTCAACATTGGGAACCAAGA
508 ATCAAATAAGGCAACCATTGATTCTCGTAACAGTTC-CCATTCTTCTCAAGATTAGGAACCAAAA
* * * * * * * *
417668 ACACATTTCCTTCATTAAGATACATGACATTGATGCTTTCGTGTCGTAAGAAAAGCTTTTCTTT-
572 ACACATTACTTTCATTAGGATACATGACATTGATGCTGTAGTGCCGCAAGAAAAGCTTTTATTTC
* * * *
417732 ACACTGGTTT-TGATAA-AATCAAAGTTTGTCTCTTAAAT--GGCAAACATGAATAGTCATACTA
637 A-AC-CGTTTCTG-TAAGAATCAAAATTTGTCTCTTAAATAAGAC-AACAAGAATAGTCATACTA
* * * * * *
417793 ATCCCCATTCTTTTCTAAGG--TAGGCACCATAAACATAGTCCTCTTATAAGGATACAGGATATT
698 ATCCCCATTCTTTTC--AGGATTAGGCACCATAAACGTAGTCTTCTCATTAGGATAGAAGATATT
* * * * * * * * **
417856 GACGCTTTGGTTACGCAAGAAAAGCTTTCTTCT-ATCCATTTTTTATAATA-TTTTAGTTTGTGC
761 AATGCTTTGGTT-CACAAAAAAAGCTTTCTTCTCA-CCAATTTTTGTAA-AGTCTAAGTTCATGC
* * * * ** * *
417919 CTCAAATGAGACAAAAATGGATTCTGGTAATGATCACCATTCATTTTGTGATTAGGCACTCTAAA
823 CTCAAATAAGATAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGGCACTATAAA
*
417984 CACATTCT-CTCCATTAGGGTAAATGATATTGATGATTTTC------------A--
888 CACATTCTCCT-CATTAGGATAAATGATATTGATGATTTTCTTTTGAATGGAAATC
* * * * * * **
418025 -----TTTGCCCTATATTT-CATAAAATCAAAGTTCA-GCCTTTAACAAGGCTAGCGTTGATTCT
1 TTTTCTTTGCCCTAT-TTTCCTTAAAATCAAAGTTCATCCCTTAAATAAAGCAAGCAATGATTCT
* * * * * *
418083 CGTAACAGTCTCCATTGTTTTCTATATTGGGAACCAAAAACACATTCCCTTAATTAGGATACATG
65 CATAATAGTCTCCATTCTTTTCAAGATT-GGAACC-AAAACACATTCCCTTCATTAGGATACATG
* * * * * * *
418148 ACATCGATGCTTTAGTGTCGTAAGAAAAGCTTTTCTTTCAATCGTTTTTGTTAGAATCAAAGTTT
128 ACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTTAACCATTTTTGTTAAAATCAAAGTTT
* * * * * * * * *
418213 GGCTCTTAAATAAGACATATAAGAATAGTCATACTAATCCCCATTCATTTCAGGATAAGGCACTA
193 GTCTCTTAAATAAGACAAAAAAGAATAGTCAT-CCAAT-CCTATTCTTTTTAGGATTAGGCACCA
* * * * * * ** * * * *
418278 TAAACGTAGTCTTCGCATTAGGACA-AACGATATTAATGCTTCGGATTCGCAAAAAAGGCTTTCT
256 TAAACATAATCTTCTCATAAGGATAGAA-GATATTGACACTTTGGTTTCGCAAGAAAGGCTTTTT
* * * * *
418342 TCTCAT-GAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAAGGAGACAAACAAGGATTCTAGTAAT
320 TC-CCTCCAA-TTTT-TAATGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAT
* * * *
418406 GATCTTTATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATCAGGATAAATAATATTG
382 GATCTTCATTCATTTTATGATTAGGCACTAT-AACACATTCT-CTCATTAGGATAAATGATATTG
* * * * * *
418471 ATGATTTTCTTTTGTATGAAAATCTTT-TCTTTACCCTCTTTGT-CTTAAAATCAAAGTTCATCC
445 ATGATTTTTTTTTGCATGGAAATGTTTCT-TTTGCCCTATTT-TCCTTAAAATCAAAGTTCATCC
* * * * ** ** *
418534 CTTAAATAAGGCAAGCATTAATTCTTATAGTAG-TCTCCATTCTTTTCAAGATT-GTGAACCAAA
508 ATCAAATAAGGCAACCATTGATTCTCGTAACAGTTC-CCATTCTTCTCAAGATTAG-GAACCAAA
* * * * * * * * * * *
418597 ACCACATTCCCTTCATTAAGATACATGACATTGATTCTTTGGTGTCGTAAGAAAGGCTTTT-CTT
571 AACACATTACTTTCATTAGGATACATGACATTGATGCTGTAGTGCCGCAAGAAAAGCTTTTATTT
* * * * * * * *
418661 CTAACCGTTTTTGTTACATTCAAAGTTTGTGTCTTAAATAAGACAAACAAGAATACTCACACTAA
636 C-AACCGTTTCTGTAAGAATCAAAATTTGTCTCTTAAATAAGAC-AACAAGAATAGTCATACTAA
* * *
418726 TCCCCATTCTTTCCAGGATTAGGCACCATAAACGTAGTCTTCGCATTAGGATAGACGATATTAAT
699 TCCCCATTCTTTTCAGGATTAGGCACCATAAACGTAGTCTTCTCATTAGGATAGAAGATATTAAT
* ** *
418791 GCTTTGGATTCACAAAAAAGGCTTTCTTCTCATGAATTTTTGTAAAGTCTAAGTTCGTGCCTCAA
764 GCTTTGG-TTCACAAAAAAAGCTTTCTTCTCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAA
* ** * * * * *
418856 ATGAGGCAAACAAGGATTCTAGTAACGATCTTTATTCATTTTGTGATTAGGCA-TGATAAAGACA
828 ATAAGATAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGGCACT-ATAAACACA
* * ** *
418920 TTCTCCTCATTAGGATAGATAATATTGATGATTTTCTTTTCTATGGAAATA
892 TTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGAATGGAAATC
* * * *
418971 TTTTCTTTGCCCTTTTTTTCTTAAAATCAAAGTTCATCCC-TAAAGTAAGGCAAGCATTGATTCT
1 TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAA-TAAAGCAAGCAATGATTCT
* * * *
419035 CATAATTA-TCTCCATTCTTTTCAAGATTGTGAACTAAAAGCACATTCTCTTCCTTAAGATACAT
65 CATAA-TAGTCTCCATTCTTTTCAAGATTG-GAACCAAAA-CACATTCCCTTCATTAGGATACAT
* * * * * ** ***
419099 GACACTGATGTTTTGGTGTCGTAACAAAGGCTTTT-TTTTCAACTGTTTTTGTTACTTTCAAAGT
127 GACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTT-AACCATTTTTGTTAAAATCAAAGT
* * * * * * *
419163 TTATCTCCTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCAC
191 TTGTCTCTTAAATAAGACAAAAAAGAATAGTCAT-CCAAT-CCTATTCTTTTTAGGATTAGGCAC
* *
419228 CATAAACATAATCTTCTCATTAGGATAGAAGATATTG-CTACTTTGGTTTCGTAAGAAAGG-TTT
254 CATAAACATAATCTTCTCATAAGGATAGAAGATATTGAC-ACTTTGGTTTCGCAAGAAAGGCTTT
* * * *
419291 TATTCCCTCCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATTAGTCAAACATGGATTCTAGTA
318 T-TTCCCTCCAA-TTTT-TAATGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTA
* * * * *
419356 ATGATCTTCATTCATTTTGTGGTTAGGCACAATAAACACATTCTCCTCTTTAAGATAAATGATAT
380 ATGATCTTCATTCATTTTATGATTAGGCACTAT-AACACATTCT-CTCATTAGGATAAATGATAT
** * * * *
419421 TGACAATTTTATTTTGGATGGAAATGTTTCCTTTGCCCTATTTTCCATAAAATCAAAGTTCATCC
443 TGATGATTTTTTTTTGCATGGAAATGTTTCTTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCC
* * * * * * * *
419486 CTCAAATAAGACGAGCATTGATTCTTGTAATAG-TCCCTATTCTTATCAAGATTGGGAACCAAAA
508 ATCAAATAAGGCAACCATTGATTCTCGTAACAGTTCCC-ATTCTTCTCAAGATTAGGAACCAAAA
* * * * ** *
419550 ACATATTCCCTTT-ATTCA-GATACATGACATTCATGCTGTGGTGTTGCAAGAAAAGC-TTTCTT
572 ACACATT-ACTTTCATT-AGGATACATGACATTGATGCTGTAGTGCCGCAAGAAAAGCTTTTATT
* * * * * * * * *
419612 TCAACCGTTTGTG-ATAGAATCAAAGTTTGTTTCTTTACTAAGAATAATATGAATAGTCATAATA
635 TCAACCGTTTCTGTA-AGAATCAAAATTTGTCTCTTAAATAAG-ACAACAAGAATAGTCATACTA
* * **
419676 ATCCCCA-TCTTTTCAAGATTAGGCACCATAAACGAAGTCTTCTCATTAGGATAGAAGATATTGC
698 ATCCCCATTCTTTTCAGGATTAGGCACCATAAACGTAGTCTTCTCATTAGGATAGAAGATATTAA
* * * *
419740 TGCTTTGGTTTCACAAAAAACA-CTTTCTTCCCTCCAATTTTTGTAAAGTCTATGTTCGTGCCTC
763 TGCTTTGG-TTCACAAAAAA-AGCTTTCTTCTCACCAATTTTTGTAAAGTCTAAGTTCATGCCTC
* * * * *
419804 GAATTAGTTAAACATGGATTCTAGTAATGATCTTC-TTTTATTTTTTGATTAGGCACTATAAACA
826 AAATAAGATAAACATGGATTCTAGTAATGATCTTCATTCT-TTTTGTGATTAGGCACTATAAACA
* * * * *
419868 AATTCTCCTCTTTAGGATAAATGATATTGATGGTTTTGTTTTGGATGGAAATC
890 CATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGAATGGAAATC
* * * * * * *
419921 TTTTCTTTGCCCTATTTTCCTTAAAATCAAAATCCATCCCATAAA-ATATGACCAGC-TTCATTC
1 TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATA-AAG-CAAGCAATGATTC
* * * * * * *
419984 TCATAACATTCTCCATTCTTTTTATGATTGGGAGCCAAGAACATATTGCCTTCATTAGGATACAT
64 TCATAATAGTCTCCATTCTTTTCAAGATT-GGAACCAA-AACACATTCCCTTCATTAGGATACAT
* * * *
420049 GACATTGATGCTTTGGTGTGGCATGAAAAGCTTTTC-TTTACACCAGTTTTGATAAAATCAAAGT
127 GACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTTA-ACCATTTTTGTTAAAATCAAAGT
* * * * * *** *
420113 TTGTCTCTTAAATAAGACAAACATGAATAGCCATACAAATCCTA-CCTTTTCCTGAGTAGGCACC
191 TTGTCTCTTAAATAAGACAAAAAAGAATAGTCAT-CCAATCCTATTCTTTTTAGGATTAGGCACC
* * * * * * *
420177 ATAAAAATAGTCTTTTTATAAGGATACACGATATTGACACTTTGGTTTCGCAAGAAAGGCTTTCT
255 ATAAACATAATCTTCTCATAAGGATAGAAGATATTGACACTTTGGTTTCGCAAGAAAGGCTTTTT
** *
420242 TCTATCCAATTTTTATAATGTCTAAGTTCGTGCCTCAAATGTGACAAACATGGATTCTAGTAATG
320 TCCCTCCAA-TTTT-TAATGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATG
* * * *
420307 ATCTTCATTCGTTTTTTGATTAGGCACTATAAGCAAATTCTCCTCTTTAGGATAAATGATATTGA
383 ATCTTCATTCATTTTATGATTAGGCACTATAA-CACATTCT-CTCATTAGGATAAATGATATTGA
* * * * * * *
420372 TGGTTTTCTTTTGGATTGAAATATTT-TCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCT
446 TGATTTTTTTTTGCATGGAAATGTTTCT-TTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCAT
* * * * * * * * * * * *
420436 TAAATATA-ACCAGCA-TCATTCTCATAACAG-TCTCCATTCTTTTTATGATT-GGAAGTCGAGA
510 CAAATA-AGGCAACCATTGATTCTCGTAACAGTTC-CCATTCTTCTCAAGATTAGGAA-CCAAAA
* * * * * * * *
420497 ACACATTGCCTTCGTTAGGATACATGACATTGATGCTTTGGTGTCGCATGAAAAGCTTTTCTTT-
572 ACACATTACTTTCATTAGGATACATGACATTGATGCTGTAGTGCCGCAAGAAAAGCTTTTATTTC
* * * * *
420561 ACACTAGTTT-TGATAA-AATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCTTACAA
637 A-AC-CGTTTCTG-TAAGAATCAAAATTTGTCTCTTAAATAAGAC-AACAAGAATAGTCATACTA
* * * * * * * * *
420624 AT-CCAATTTTTTTC-CGAGTAGGCACCATAAACATAATCTTCTTATAAGGATACAAGATATTGA
698 ATCCCCATTCTTTTCAGGATTAGGCACCATAAACGTAGTCTTCTCATTAGGATAGAAGATATT-A
* * * * * * * * * * *
420687 A-GCTTTGCTTTCGCAAGAAAGGCTTTCTTCT-ATCCAACTTTTATAATGCCAAAGTTCGTTCCT
762 ATGCTTTG-GTTCACAAAAAAAGCTTTCTTCTCA-CCAATTTTTGTAAAGTCTAAGTTCATGCCT
* * * *
420750 CAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTCTAAACA
825 CAAATAAGATAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGGCACTATAAACA
* *
420815 CATTCT-CTCCATTAGGGTAAATGATATTGATGATTTTCTTTTGCATGGAAAT-
890 CATTCTCCT-CATTAGGATAAATGATATTGATGATTTTCTTTTGAATGGAAATC
* * * * * *
420867 GTTTCTTTTGCCCTGTTTTCCTTAAAATCAAAGTTCATCCCTTTAACAAGGCAAGCATTGATTCT
1 TTTTC-TTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAAGCAAGCAATGATTCT
** * * * *
420932 CATAGCAGTTTCCATTCTTTTCAAGCTTAGGAACCAAAAACGCATTCCTTTCATTAGGATACATG
65 CATAATAGTCTCCATTCTTTTCAAGATT-GGAACC-AAAACACATTCCCTTCATTAGGATACATG
* * * * *
420997 AGATTGATTCTTTAGTGTCGCAAGAAAAGCTTTTCTTTCAACCATTTTTGTTAGAATCAAAGTTT
128 ACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTTAACCATTTTTGTTAAAATCAAAGTTT
* * * *
421062 GTCTCTTAAATAAGACAAACAAGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCA
193 GTCTCTTAAATAAGACAAAAAAGAATAGTCAT-CCAAT-CCTATTCTTTTTAGGATTAGGCACCA
** * * * * ** * *
421127 TAAACGGAATCTTCGCATTAGGATAGACGATATTAATGCTTTGGATTCGCAAGAAAGGCTTTCTT
256 TAAACATAATCTTCTCATAAGGATAGAAGATATTGACACTTTGGTTTCGCAAGAAAGGCTTTTTT
* * * * * * * *
421192 CTCACGAATTTTTATAAAGTCTAAGCTCGTGCCTCAAAGGAGACAAAAAAGGATTCTAGTAATGA
321 CCCTCCAA-TTTT-TAATGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGA
* * * * *
421257 TCTTCATTCTTTTTGTGATTAGGCACTATAAACACATTCTCCTCATCAAGATAAATAATATTGAT
384 TCTTCATTCATTTTATGATTAGGCACTAT-AACACATTCT-CTCATTAGGATAAATGATATTGAT
* * * *
421322 GA-TTTTTTTTGTATGAAAATCTTT-TCTTTGCCCTCTTTTCCTTAAAATCAAAGTTCATCTC-T
447 GATTTTTTTTTGCATGGAAATGTTTCT-TTTGCCCTATTTTCCTTAAAATCAAAGTTCATC-CAT
* * * *
421384 TAAATAAGGCAAGCATTGATTCTCATAACAG-TCTCCATTCTTCTCAAGATT-GTGAACCAAAAC
510 CAAATAAGGCAACCATTGATTCTCGTAACAGTTC-CCATTCTTCTCAAGATTAG-GAACCAAAAA
* * * * * * ** * *
421447 CACATTCCCTTCATTAAGATACATTACATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTTTTTTA
573 CACATTACTTTCATTAGGATACATGACATTGATGCTGTAGTGCCGCAAGAAAAGCTTTTATTTCA
* * * * * * ** *
421512 ACCGTTTTTGTTACATTCAAAGTTTGTCTCTTAAATAGGGGA-AACATA-AATTTTCATCCTAAT
638 ACCGTTTCTGTAAGAATCAAAATTTGTCTCTTAAATA--AGACAACA-AGAATAGTCATACTAAT
* * * * * **
421575 CCCCGTTCTTTTGAGGATTAGGCGCCATAAACATAATCTTCTCATTAGGATAGAAGATATTGCTG
700 CCCCATTCTTTTCAGGATTAGGCACCATAAACGTAGTCTTCTCATTAGGATAGAAGATATTAATG
* * * * * *
421640 CTTTGGTTTCGCAAGAAACA-CTTTCTTCCCTCCAATTGTTGTAAAGTCTAAGTT-AGTGGCTCA
765 CTTTGG-TTCACAA-AAAAAGCTTTCTTCTCACCAATTTTTGTAAAGTCTAAGTTCA-TGCCTCA
* * *
421703 AAT-GGGTCAAACATGGATTTTAGTAATGATCTTCATTCATTTTT-TGATTAGGCACTATAAACA
827 AATAAGAT-AAACATGGATTCTAGTAATGATCTTCATTC-TTTTTGTGATTAGGCACTATAAACA
* * ** *
421766 CATTCTCCTCATTAGAATAAATGATATTGACGATTTT-AATTGCATGG-AAT-
890 CATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGAATGGAAATC
* * * * * *
421816 TGTTTCTTTTGCCCTATTTTCCATAAAATCAAAGTTCTTCCCTCAAATAAGGCGAGCATTGATTC
1 T-TTTC-TTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAAGCAAGCAATGATTC
* * * * * * *
421881 TCGTAACAGTCCCCATTCTTCTCAAGATTGGGAACCAAAAACATATTCTCTTCATTAGGATACCT
64 TCATAATAGTCTCCATTCTTTTCAAGATT-GGAACC-AAAACACATTCCCTTCATTAGGATACAT
* * * * ** * * *
421946 GACATTGATGATGTGGTGTAGCAAG-AAAGCTTTTCTTTCAACTGTTTTTGATAGAATCAAAGCT
127 GACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTTAACCATTTTTGTTAAAATCAAAGTT
* * * * * * *
422010 TGTTTCTTTAATAAGA-ATAACATGAATAGTCATACTAATGCCTATTCTTTTCAGGATAAGGCAC
192 TGTCTCTTAAATAAGACA-AAAAAGAATAGTCAT-CCAAT-CCTATTCTTTTTAGGATTAGGCAC
* * * * * *
422074 CATAAACGTAGTCTTCTCATTAGGATAAAAGATATT-ACTACTTTGGTTTCACAAGAAATG-TTT
254 CATAAACATAATCTTCTCATAAGGATAGAAGATATTGAC-ACTTTGGTTTCGCAAGAAAGGCTTT
* * * * *
422137 CTTCCCTCCAATTTTTGTAAAGTCTAAGTTCGTGCCTCGAATTAGTCAAACATGGATTCTAGTAA
318 TTTCCCTCCAA-TTTT-TAATGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAA
* * *
422202 TGATCTTCATTCATTTTTTGATTAGGCACTATAAACAAATTCTCCTCTTTAGGATAAATGATATT
381 TGATCTTCATTCATTTTATGATTAGGCACTAT-AACACATTCT-CTCATTAGGATAAATGATATT
* * * * * * *
422267 GATGGTTTTCTTTTGGATGGAAATCTTT-TCTTTGCCCTATTTTCCTTAAAATGAAAATTTATCC
444 GATGATTTTTTTTTGCATGGAAATGTTTCT-TTTGCCCTATTTTCCTTAAAATCAAAGTTCATCC
* * * * * * * * * * *
422331 CTTAAA-AATGACCAGCA-TCATTCTCATAACAG-TCTCCATTCTTTTTATGATTAGG-AGCAAA
508 ATCAAATAA-GGCAACCATTGATTCTCGTAACAGTTC-CCATTCTTCTCAAGATTAGGAACCAAA
* * * * *** *
422392 GAAGACATTTCCTTT-ATTAGGATACATGACATTGATGCTTTGGTATTGTAAGAAAAGCTTTT-T
571 -AACACA-TTACTTTCATTAGGATACATGACATTGATGCTGTAGTGCCGCAAGAAAAGCTTTTAT
* * ** *
422455 TTTACACCGGTTT-TGATAA-AATCAAAGTTTGTCTCTTAAATAAGACAGACTTGGATAGTCATA
634 TTCA-ACC-GTTTCTG-TAAGAATCAAAATTTGTCTCTTAAATAAGACA-ACAAGAATAGTCATA
* ** * * * * * * * *
422518 CTAATTCCCATTCTTTTCCCGAGTAGGCACCACAAACATAGTCTTCTTATAAGGATACACGATAC
695 CTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACGTAGTCTTCTCATTAGGATAGAAGATAT
* ** * * * * * *
422583 TGACACTTTGGTTTCGCAAGAAAGGCTTTCTTCT-ATCCAATTTTTATAATGTCTAAGTTCGTGC
760 TAATGCTTTGG-TTCACAAAAAAAGCTTTCTTCTCA-CCAATTTTTGTAAAGTCTAAGTTCATGC
* * * * * *
422647 ATCAAATGAGAGAAACATGGATTCTAGTAATGATCTTCATTCATTTGGTGATTAGGCACTCTAAA
823 CTCAAATAAGATAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGGCACTATAAA
* *
422712 CACATTCT-CTCCATTAGGGTAAATGATATTGATGATTTTCTTTT-ATATGAAAAT-
888 CACATTCTCCT-CATTAGGATAAATGATATTGATGATTTTCTTTTGA-ATGGAAATC
* * * * * * * *
422766 GTTTCTTTTGCCCTTTTTTTCATAAAATCAAAGTTCATCCCTTTAACAAGGCAAGCACT-ACTTC
1 TTTTC-TTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAAGCAAGCAATGA-TTC
* ** * * *
422830 TCGTAACGGTCTCCATTCCTTTCAAGATTGTGAACCAAAAATAGATTCCCTTCATTAGGATACAT
64 TCATAATAGTCTCCATTCTTTTCAAGATTG-GAACC-AAAACACATTCCCTTCATTAGGATACAT
* * * * * *
422895 GACATTGATGCTTTAGTGTCGCAAGAAAAGCTTTTCTTTCATCCGTTTTTGTTAGAGTCAAAGTT
127 GACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTTAACCATTTTTGTTAAAATCAAAGTT
* * * * * * * * * *
422960 TGTGTCTTAAATAAGATAAACAGGAGTAGTCATACTAATCCCCATTATTTTCAAGATTAGGCACC
192 TGTCTCTTAAATAAGACAAAAAAGAATAGTCAT-CCAAT-CCTATTCTTTTTAGGATTAGGCACC
* * * * ** * *
423025 ATAAACGTAGTCTTCGCCATAA--ATAGGAGTAGTCATATTAATGCTTTGGATTT-GTAAAAAAG
255 ATAAACATAATCTTC-TCATAAGGATA-GA--AG--ATATTGACACTTTGG-TTTCGCAAGAAAG
* * * * * * *
423087 GCTTTCTTCTCACCAATTTTTGAAAAGTCTAAGTTCGTGCCTCAATTGGGGCAAACATGGATTCT
313 GCTTTTTTCCCTCCAATTTTT--AATGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCT
* * * *
423152 AGTAATGATCTTCATTCATTTTGTGGTTAGGCACTATAAACACATTCTCCTTAGTAGGATAAATG
376 AGTAATGATCTTCATTCATTTTATGATTAGGCACTAT-AACACATTCT-CTCATTAGGATAAATG
* * * * * * *
423217 ATATTGATGATTTTCTTTTGCATGAAAATCTTT-TCTTTACTCTATTTTCCTTAAAATAAAAATT
439 ATATTGATGATTTTTTTTTGCATGGAAATGTTTCT-TTTGCCCTATTTTCCTTAAAATCAAAGTT
* * * * * * * * ** * *
423281 TACCCCTTAAATATGACAAGCATCGATTCTTATAACAG-TCTCTATTCTTTTCAAGATTTA-GAA
503 CATCCATCAAATAAGGCAACCATTGATTCTCGTAACAGTTC-CCATTCTTCTCAAGA-TTAGGAA
* * * * * * *
423344 CCAAGAACACATTGCCTTCATTAGGATACATGACATTAATGCTTTGGTGCCACAAGAAAAGCTTT
566 CCAAAAACACATTACTTTCATTAGGATACATGACATTGATGCTGTAGTGCCGCAAGAAAAGCTTT
* * * * * * *
423409 TCTTTCAACCGTTTCTG-ATAGAATCAAAGTTTGTTTCTTTAATAAGAATAACATGAAGAGTCAT
631 TATTTCAACCGTTTCTGTA-AGAATCAAAATTTGTCTCTTAAATAAG-ACAACAAGAATAGTCAT
*
423473 ACTAATCCCCATTCTTTTCGGGATTAGGCACCATAAACGTAGTCTTCTCATTAGGATAGAAGATA
694 ACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACGTAGTCTTCTCATTAGGATAGAAGATA
** * * * * * * **
423538 TTGCTACTTTGGTTTCGCAAAAAACA-TTTTCTTCCCTCCAATTTTTGTGAAGTCTAAGTTCGGG
759 TTAATGCTTTGG-TTCACAAAAAA-AGCTTTCTTCTCACCAATTTTTGTAAAGTCTAAGTTCATG
* * * * *
423602 CCTCGAATGAG-TCAAACAAGGATTCTAGTAATGATCTTAATTCATTTTGTGATTAGGCACTATA
822 CCTCAAATAAGAT-AAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGGCACTATA
* * * * *
423666 AACACATTCTCCTCATCAGGAAAAATAATATTAATGATTTTCTTTTGTATGGAAATC
886 AACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGAATGGAAATC
* *
423723 TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTC
1 TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAAGCAAGCAATGATTCTC
* * * * *
423788 ATAATAGTCTCAATCCTTTTCAAGATTATGAACAAAAACCACATTCCCTTCATTAAGATACATGA
66 ATAATAGTCTCCATTCTTTTCAAGATT-GGAACCAAAA-CACATTCCCTTCATTAGGATACATGA
* * * * * *
423853 CATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTTAACCGTTTTTGTTACATTCAAGGTTTC
129 CATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTTAACCATTTTTGTTAAAATCAAAGTTTG
* * * *
423918 TCTCTTAAATAAGACAAACATGAATAGTCATCCTAATCCCCATTCTTTTGAGGATTAGGCACCAT
194 TCTCTTAAATAAGACAAAAAAGAATAGTCATCC-AAT-CCTATTCTTTTTAGGATTAGGCACCAT
* * * * * *
423983 AAACATAATCTTCTCATTAGGATAGAAGATATTG-CTGCTTTGGTTTTGCAAAAAATGCTTTCTT
257 AAACATAATCTTCTCATAAGGATAGAAGATATTGAC-ACTTTGGTTTCGCAAGAAAGGCTTTTTT
* * *
424047 CCCTCCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGTCAAACATGGATTCTAGTACTGA
321 CCCTCCAA-TTTT-TAATGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGA
* * * *
424112 TCTTCATTCATTTTGTGATTATGCACTAAAAACACATTCTTCTCATTAGGATAAATGATATTGCT
384 TCTTCATTCATTTTATGATTAGGCACT-ATAACACATTC-TCTCATTAGGATAAATGATATTGAT
* * * * * *
424177 AATTTTCTTTTGCGTGGAAATCTTT-TCTTTGCTCTATTTTCCTTAAAATCAAAATTCATCACAT
447 GATTTTTTTTTGCATGGAAATGTTTCT-TTTGCCCTATTTTCCTTAAAATCAAAGTTCATC-CAT
* * * * * * * * * *
424241 -AGAA-ATGACAAGCATCGATTCTCATAATAG-TCTCCATTCTTTTCAAGGTTTGGAA-C----T
510 CA-AATAAGGCAACCATTGATTCTCGTAACAGTTC-CCATTCTTCTCAAGATTAGGAACCAAAAA
* * * ** * *
424298 CACATT-CTCTTCATTATGATACATGACATTGATGCTTTGGTGTTGTAAGAGAAGCTTTGT-TTT
573 CACATTACT-TTCATTAGGATACATGACATTGATGCTGTAGTGCCGCAAGAAAAGCTTT-TATTT
* * * * * * *
424361 CAACCATTTTTG-ACTGAATCAAAGTTCGTCTCTTTAATAAGACAACCATGAATAGTCATACTAA
636 CAACCGTTTCTGTA-AGAATCAAAATTTGTCTCTTAAATAAGACAA-CAAGAATAGTCATACTAA
* * * * **
424425 TCTCCATTCATTTCAGGATTAGGCACCATAAACGTAGTCTTTTCATTAGGATAGACGATATTAGC
699 TCCCCATTCTTTTCAGGATTAGGCACCATAAACGTAGTCTTCTCATTAGGATAGAAGATATTAAT
* * * * *
424490 ACTTTGGATTCACAAGAAAGGATTTCTTCTCACCAATTTTTGTAAAGTCCAAGTTCATGCCTCAA
764 GCTTTGG-TTCACAAAAAAAGCTTTCTTCTCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAA
* * * * * * *
424555 ATGAGACAATCAGGGATTCTAGTAATGATCATCATTCATTTTGTGATTAGGAACTATAAACACAT
828 ATAAGATAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGGCACTATAAACACAT
* * *
424620 TCTCCTCATTAGGATAAATGATATTAATGATTTTCTTTTGAATAGATATC
893 TCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGAATGGAAATC
* * ** * * * *
424670 TTTTCTTTACCCTCTTTTCCTTAAAATCAATTTTCATCCCTTAAATAAGGTAAGCATTGATTCCC
1 TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAAGCAAGCAATGATTCTC
* * * * * * *
424735 GTAACAGTCTTCATTCTTTTCAAGACTGTGAACCAAAAACACATTCCATTCGTTAGGATACTTGA
66 ATAATAGTCTCCATTCTTTTCAAGATTG-GAACC-AAAACACATTCCCTTCATTAGGATACATGA
* * * * * * *
424800 CATTGATGCTTTGATCTTGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGTTACATTCAAAGTTTG
129 CATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTTAACCATTTTTGTTAAAATCAAAGTTTG
* * * * ** * *
424865 TCTCTTAAATAAAATAAACATGAATAGTCATAGTAATCCTTATTCTTTTCAGGATTAAGCACCAT
194 TCTCTTAAATAAGACAAAAAAGAATAGTCAT-CCAATCC-TATTCTTTTTAGGATTAGGCACCAT
* * * * *
424930 AAACATAATCTTCTCATTAA-GATGGAAGAAATT-ACTACTTTGGTTTCGCATGAAATGCTTTCT
257 AAACATAATCTTCTCA-TAAGGATAGAAGATATTGAC-ACTTTGGTTTCGCAAGAAAGGCTTTTT
* * * *
424993 TCCCTCTAACTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGTCAAACATGGATTCTAGTAATG
320 TCCCTCCAA-TTTT-TAATGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATG
* * *
425058 ATCTTTATTCATTTTGTGATTAGGCACTGTAAACACATTCTCCTCATTAGGATAAATGATATT
383 ATCTTCATTCATTTTATGATTAGGCACTAT-AACACATTCT-CTCATTAGGATAAATGATATT
425121 TGTTAGGATC
Statistics
Matches: 9779, Mismatches: 1580, Indels: 785
0.81 0.13 0.06
Matches are distributed among these distances:
899 3 0.00
900 99 0.01
901 98 0.01
902 235 0.02
903 3 0.00
905 3 0.00
906 66 0.01
907 7 0.00
908 3 0.00
909 18 0.00
910 203 0.02
911 2 0.00
912 1 0.00
915 8 0.00
916 326 0.03
917 10 0.00
918 147 0.02
919 268 0.03
920 5 0.00
921 5 0.00
922 6 0.00
923 46 0.00
924 27 0.00
925 4 0.00
926 2 0.00
927 1 0.00
928 49 0.01
929 93 0.01
930 351 0.04
931 9 0.00
932 204 0.02
933 8 0.00
934 2 0.00
935 1 0.00
937 1 0.00
938 5 0.00
939 202 0.02
940 4 0.00
941 8 0.00
944 9 0.00
945 3 0.00
946 28 0.00
947 1169 0.12
948 1244 0.13
949 917 0.09
950 880 0.09
951 1296 0.13
952 871 0.09
953 30 0.00
954 25 0.00
955 206 0.02
956 545 0.06
957 23 0.00
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (942 bp):
TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAAGCAAGCAATGATTCTC
ATAATAGTCTCCATTCTTTTCAAGATTGGAACCAAAACACATTCCCTTCATTAGGATACATGACA
TTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTTAACCATTTTTGTTAAAATCAAAGTTTGTC
TCTTAAATAAGACAAAAAAGAATAGTCATCCAATCCTATTCTTTTTAGGATTAGGCACCATAAAC
ATAATCTTCTCATAAGGATAGAAGATATTGACACTTTGGTTTCGCAAGAAAGGCTTTTTTCCCTC
CAATTTTTAATGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCAT
TCATTTTATGATTAGGCACTATAACACATTCTCTCATTAGGATAAATGATATTGATGATTTTTTT
TTGCATGGAAATGTTTCTTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCATCAAATAAGGCA
ACCATTGATTCTCGTAACAGTTCCCATTCTTCTCAAGATTAGGAACCAAAAACACATTACTTTCA
TTAGGATACATGACATTGATGCTGTAGTGCCGCAAGAAAAGCTTTTATTTCAACCGTTTCTGTAA
GAATCAAAATTTGTCTCTTAAATAAGACAACAAGAATAGTCATACTAATCCCCATTCTTTTCAGG
ATTAGGCACCATAAACGTAGTCTTCTCATTAGGATAGAAGATATTAATGCTTTGGTTCACAAAAA
AAGCTTTCTTCTCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATAAGATAAACATGGATT
CTAGTAATGATCTTCATTCTTTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAA
TGATATTGATGATTTTCTTTTGAATGGAAATC
Found at i:418995 original size:476 final size:477
Alignment explanation
Indices: 418019--425120 Score: 8133
Period size: 476 Copynumber: 14.9 Consensus size: 477
418009 ATATTGATGA
* * * * * *
418019 TTTTCATTTGCCCTATATTT-CATAAAATCAAAGTTCA-GCCTTTAACAAGGCTAGCGTTGATTC
1 TTTTC-TTTGCCCTAT-TTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTC
* * * * * *
418082 TCGTAACAGTCTCCATTGTTTTCTATATTGGGAACCAAAAACACATTCCCTTAATTAGGATACAT
64 TCATAACAGTCTCCATTCTTTTCAAGATTGTGAACCAAAAACACATTCCCTTCATTAGGATACAT
* * * * *
418147 GACATCGATGCTTTAGTGTCGTAAGAAAAGCTTTTCTTTCAATCGTTTTTGTTAGAATCAAAGTT
129 GACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGTTACAATCAAAGTT
* * * * * * *
418212 TGGCTCTTAAATAAGACATATAAGAATAGTCATACTAATCCCCATTCATTTCAGGATAAGGCACT
194 TGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACC
* * * * *
418277 ATAAACGTAGTCTTCGCATTAGGACA-AACGATATTAATGCTTCGGATTCGCAAAAAAGGCTTTC
259 ATAAACGTAGTCTTCTCATTAGGATAGAA-GATATTAATGCTTTGGTTTCGCAAGAAAGGCTTTC
* * * *
418341 TTCTCAT-GAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAAGGAGACAAACAAGGATTCTAGTAA
323 TTCTCATCCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGTCAAACATGGATTCTAGTAA
* * *
418405 TGATCTTTATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATCAGGATAAATAATATT
388 TGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATT
*
418470 GATGATTTTCTTTTGTATGAAAATC
453 GATGATTTTCTTTTGTATGGAAATC
* * *
418495 TTTTCTTTACCCTCTTTGT-CTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTAATTCT
1 TTTTCTTTGCCCTATTT-TCCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCT
* ** * *
418559 TATAGTAGTCTCCATTCTTTTCAAGATTGTGAACCAAAACCACATTCCCTTCATTAAGATACATG
65 CATAACAGTCTCCATTCTTTTCAAGATTGTGAACCAAAAACACATTCCCTTCATTAGGATACATG
* * * *
418624 ACATTGATTCTTTGGTGTCGTAAGAAAGGCTTTTC-TTCTAACCGTTTTTGTTACATTCAAAGTT
130 ACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTC-AACCGTTTTTGTTACAATCAAAGTT
* * * * *
418688 TGTGTCTTAAATAAGACAAACAAGAATACTCACACTAATCCCCATTCTTTCCAGGATTAGGCACC
194 TGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACC
* * * * *
418753 ATAAACGTAGTCTTCGCATTAGGATAGACGATATTAATGCTTTGGATTCACAAAAAAGGCTTTCT
259 ATAAACGTAGTCTTCTCATTAGGATAGAAGATATTAATGCTTTGGTTTCGCAAGAAAGGCTTTCT
* * * *
418818 TCTCAT-GAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGGCAAACAAGGATTCTAGTAAC
324 TCTCATCCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGTCAAACATGGATTCTAGTAAT
* * * *
418882 GATCTTTATTCATTTTGTGATTAGGCA-TGATAAAGACATTCTCCTCATTAGGATAGATAATATT
389 GATCTTCATTCATTTTGTGATTAGGCACT-ATAAACACATTCTCCTCATTAGGATAAATGATATT
* *
418946 GATGATTTTCTTTTCTATGGAAATA
453 GATGATTTTCTTTTGTATGGAAATC
* *
418971 TTTTCTTTGCCCTTTTTTTCTTAAAATCAAAGTTCATCCC-TAAAGTAAGGCAAGCATTGATTCT
1 TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAA-TAAGGCAAGCATTGATTCT
* * * * * *
419035 CATAATTA-TCTCCATTCTTTTCAAGATTGTGAACTAAAAGCACATTCTCTTCCTTAAGATACAT
65 CATAA-CAGTCTCCATTCTTTTCAAGATTGTGAACCAAAAACACATTCCCTTCATTAGGATACAT
* * * * * * * **
419099 GACACTGATGTTTTGGTGTCGTAACAAAGGCTTTTTTTTCAACTGTTTTTGTTACTTTCAAAGTT
129 GACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGTTACAATCAAAGTT
* *
419164 TATCTCCTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACC
194 TGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACC
* * ** * * * *
419229 ATAAACATAATCTTCTCATTAGGATAGAAGATATTGCTACTTTGGTTTCGTAAGAAAGGTTTTAT
259 ATAAACGTAGTCTTCTCATTAGGATAGAAGATATTAATGCTTTGGTTTCGCAAGAAAGGCTTTCT
* * *
419294 TC-CCTCCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATTAGTCAAACATGGATTCTAGTAAT
324 TCTCATCCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGTCAAACATGGATTCTAGTAAT
* * * *
419358 GATCTTCATTCATTTTGTGGTTAGGCACAATAAACACATTCTCCTCTTTAAGATAAATGATATTG
389 GATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTG
** * * *
419423 ACAATTTTATTTTGGATGGAAATG
454 ATGATTTTCTTTTGTATGGAAATC
* * * * * *
419447 TTTCCTTTGCCCTATTTTCCATAAAATCAAAGTTCATCCCTCAAATAAGACGAGCATTGATTCTT
1 TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTC
* * * * * *
419512 GTAATAGTC-CCTATTCTTATCAAGATTGGGAACCAAAAACATATTCCCTTTATTCA-GATACAT
66 ATAACAGTCTCC-ATTCTTTTCAAGATTGTGAACCAAAAACACATTCCCTTCATT-AGGATACAT
* * * * * *
419575 GACATTCATGCTGTGGTGTTGCAAGAAAAGC-TTTCTTTCAACCGTTTGTGATAGAATCAAAGTT
129 GACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGTTACAATCAAAGTT
* * * * * *
419639 TGTTTCTTTACTAAGA-ATAATATGAATAGTCATAATAATCCCCA-TCTTTTCAAGATTAGGCAC
194 TGTCTCTTAAATAAGACA-AACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCAC
* ** * * **
419702 CATAAACGAAGTCTTCTCATTAGGATAGAAGATATTGCTGCTTTGGTTTCACAAAAAACACTTTC
258 CATAAACGTAGTCTTCTCATTAGGATAGAAGATATTAATGCTTTGGTTTCGCAAGAAAGGCTTTC
* * * * *
419767 TTC-CCTCCAATTTTTGTAAAGTCTATGTTCGTGCCTCGAATTAGTTAAACATGGATTCTAGTAA
323 TTCTCATCCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGTCAAACATGGATTCTAGTAA
* * * * *
419831 TGATCTTCTTTTATTTTTTGATTAGGCACTATAAACAAATTCTCCTCTTTAGGATAAATGATATT
388 TGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATT
* * *
419896 GATGGTTTTGTTTTGGATGGAAATC
453 GATGATTTTCTTTTGTATGGAAATC
* * * * * * *
419921 TTTTCTTTGCCCTATTTTCCTTAAAATCAAAATCCATCCCATAAAATATGACCAGC-TTCATTCT
1 TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCC-TTAAATAAGGCAAGCATTGATTCT
* * * * * * * *
419985 CATAACATTCTCCATTCTTTTTATGATTGGGAGCCAAGAACATATTGCCTTCATTAGGATACATG
65 CATAACAGTCTCCATTCTTTTCAAGATTGTGAACCAAAAACACATTCCCTTCATTAGGATACATG
* * * *
420050 ACATTGATGCTTTGGTGTGGCATGAAAAGCTTTTCTTT-ACACCAG-TTTTGATAAAATCAAAGT
130 ACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCA-ACC-GTTTTTGTTACAATCAAAGT
* * * * ** *
420113 TTGTCTCTTAAATAAGACAAACATGAATAGCCATACAAAT-CCTA-CCTTTTCCTGAGTAGGCAC
193 TTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCAC
** * * * * * * **
420176 CATAAAAATAGTCTTTTTATAAGGATACACGATATTGACACTTTGGTTTCGCAAGAAAGGCTTTC
258 CATAAACGTAGTCTTCTCATTAGGATAGAAGATATTAATGCTTTGGTTTCGCAAGAAAGGCTTTC
* * * *
420241 TTCT-ATCCAATTTTTATAATGTCTAAGTTCGTGCCTCAAATGTGACAAACATGGATTCTAGTAA
323 TTCTCATCCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGTCAAACATGGATTCTAGTAA
* * * * *
420305 TGATCTTCATTCGTTTTTTGATTAGGCACTATAAGCAAATTCTCCTCTTTAGGATAAATGATATT
388 TGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATT
* * * *
420370 GATGGTTTTCTTTTGGATTGAAATA
453 GATGATTTTCTTTTGTATGGAAATC
* * * *
420395 TTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATA-ACCAGCA-TCATTCT
1 TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATA-AGGCAAGCATTGATTCT
* * * * * * *
420458 CATAACAGTCTCCATTCTTTTTATGATTG-GAAGTCGAGAACACATTGCCTTCGTTAGGATACAT
65 CATAACAGTCTCCATTCTTTTCAAGATTGTGAA-CCAAAAACACATTCCCTTCATTAGGATACAT
* * * *
420522 GACATTGATGCTTTGGTGTCGCATGAAAAGCTTTTCTTT-ACACTAG-TTTTGATAAAATCAAAG
129 GACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCA-AC-CGTTTTTGTTACAATCAAAG
* * * * * *
420585 TTTGTCTCTTAAATAAGACAAACATGAATAGTCTTACAAAT-CCAATTTTTTTC-CGAGTAGGCA
192 TTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCA
* * * * * *
420648 CCATAAACATAATCTTCTTATAAGGATACAAGATATTGAA-GCTTTGCTTTCGCAAGAAAGGCTT
257 CCATAAACGTAGTCTTCTCATTAGGATAGAAGATATT-AATGCTTTGGTTTCGCAAGAAAGGCTT
* * * * * * *
420712 TCTTCT-ATCCAACTTTTATAATGCCAAAGTTCGTTCCTCAAATGAGACAAACATGGATTCTAGT
321 TCTTCTCATCCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGTCAAACATGGATTCTAGT
* *
420776 AATGATCTTCATTCATTTTGTGATTAGGCACTCTAAACACATTCT-CTCCATTAGGGTAAATGAT
386 AATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCT-CATTAGGATAAATGAT
*
420840 ATTGATGATTTTCTTTTGCATGGAAAT-
450 ATTGATGATTTTCTTTTGTATGGAAATC
* * * *
420867 GTTTCTTTTGCCCTGTTTTCCTTAAAATCAAAGTTCATCCCTTTAACAAGGCAAGCATTGATTCT
1 TTTTC-TTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCT
* * * * *
420932 CATAGCAGTTTCCATTCTTTTCAAGCTTAG-GAACCAAAAACGCATTCCTTTCATTAGGATACAT
65 CATAACAGTCTCCATTCTTTTCAAGATT-GTGAACCAAAAACACATTCCCTTCATTAGGATACAT
* * * * *
420996 GAGATTGATTCTTTAGTGTCGCAAGAAAAGCTTTTCTTTCAACCATTTTTGTTAGAATCAAAGTT
129 GACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGTTACAATCAAAGTT
*
421061 TGTCTCTTAAATAAGACAAACAAGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACC
194 TGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACC
* * * * *
421126 ATAAACGGAATCTTCGCATTAGGATAGACGATATTAATGCTTTGGATTCGCAAGAAAGGCTTTCT
259 ATAAACGTAGTCTTCTCATTAGGATAGAAGATATTAATGCTTTGGTTTCGCAAGAAAGGCTTTCT
* * * * * * *
421191 TCTCA-CGAATTTTTATAAAGTCTAAGCTCGTGCCTCAAAGGAGACAAAAAAGGATTCTAGTAAT
324 TCTCATCCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGTCAAACATGGATTCTAGTAAT
* * * *
421255 GATCTTCATTCTTTTTGTGATTAGGCACTATAAACACATTCTCCTCATCAAGATAAATAATATTG
389 GATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTG
*
421320 ATGATTTT-TTTTGTATGAAAATC
454 ATGATTTTCTTTTGTATGGAAATC
* *
421343 TTTTCTTTGCCCTCTTTTCCTTAAAATCAAAGTTCATCTCTTAAATAAGGCAAGCATTGATTCTC
1 TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTC
* * * *
421408 ATAACAGTCTCCATTCTTCTCAAGATTGTGAACCAAAACCACATTCCCTTCATTAAGATACATTA
66 ATAACAGTCTCCATTCTTTTCAAGATTGTGAACCAAAAACACATTCCCTTCATTAGGATACATGA
* * * *
421473 CATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTTTTTTAACCGTTTTTGTTACATTCAAAGTTTG
131 CATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGTTACAATCAAAGTTTG
* ** * ** * * * *
421538 TCTCTTAAATAGGGGAAACATAAATTTTCATCCTAATCCCCGTTCTTTTGAGGATTAGGCGCCAT
196 TCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCAT
* * ** **
421603 AAACATAATCTTCTCATTAGGATAGAAGATATTGCTGCTTTGGTTTCGCAAGAAACACTTTCTTC
261 AAACGTAGTCTTCTCATTAGGATAGAAGATATTAATGCTTTGGTTTCGCAAGAAAGGCTTTCTTC
* * * * * *
421668 -CCTCCAATTGTTGTAAAGTCTAAGTTAGTGGCTCAAATGGGTCAAACATGGATTTTAGTAATGA
326 TCATCCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGTCAAACATGGATTCTAGTAATGA
* * *
421732 TCTTCATTCATTTTTTGATTAGGCACTATAAACACATTCTCCTCATTAGAATAAATGATATTGAC
391 TCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGAT
** *
421797 GATTTT-AATTGCATGG-AAT-
456 GATTTTCTTTTGTATGGAAATC
* * * *
421816 TGTTTCTTTTGCCCTATTTTCCATAAAATCAAAGTTCTTCCCTCAAATAAGGCGAGCATTGATTC
1 T-TTTC-TTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTC
* * * * * * *
421881 TCGTAACAGTCCCCATTCTTCTCAAGATTGGGAACCAAAAACATATTCTCTTCATTAGGATACCT
64 TCATAACAGTCTCCATTCTTTTCAAGATTGTGAACCAAAAACACATTCCCTTCATTAGGATACAT
* * * * * * *
421946 GACATTGATGATGTGGTGTAGCAAG-AAAGCTTTTCTTTCAACTGTTTTTGATAGAATCAAAGCT
129 GACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGTTACAATCAAAGTT
* * * * *
422010 TGTTTCTTTAATAAGA-ATAACATGAATAGTCATACTAATGCCTATTCTTTTCAGGATAAGGCAC
194 TGTCTCTTAAATAAGACA-AACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCAC
* * * * *
422074 CATAAACGTAGTCTTCTCATTAGGATAAAAGATATTACTACTTTGGTTTCACAAGAAATG-TTTC
258 CATAAACGTAGTCTTCTCATTAGGATAGAAGATATTAATGCTTTGGTTTCGCAAGAAAGGCTTTC
* * *
422138 TTC-CCTCCAATTTTTGTAAAGTCTAAGTTCGTGCCTCGAATTAGTCAAACATGGATTCTAGTAA
323 TTCTCATCCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGTCAAACATGGATTCTAGTAA
* * *
422202 TGATCTTCATTCATTTTTTGATTAGGCACTATAAACAAATTCTCCTCTTTAGGATAAATGATATT
388 TGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATT
* *
422267 GATGGTTTTCTTTTGGATGGAAATC
453 GATGATTTTCTTTTGTATGGAAATC
* * * * * *
422292 TTTTCTTTGCCCTATTTTCCTTAAAATGAAAATTTATCCCTTAAA-AATGACCAGCA-TCATTCT
1 TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAA-GGCAAGCATTGATTCT
* * * * * *
422355 CATAACAGTCTCCATTCTTTTTATGATTAG-G-AGCAAAGAAGACATTTCCTTTATTAGGATACA
65 CATAACAGTCTCCATTCTTTTCAAGATT-GTGAACCAAA-AACACATTCCCTTCATTAGGATACA
* * * * * * *
422418 TGACATTGATGCTTTGGTATTGTAAGAAAAGCTTTT-TTTTACACCGGTTTTGATAAAATCAAAG
128 TGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCA-ACCGTTTTTGTTACAATCAAAG
* * * * ** *
422482 TTTGTCTCTTAAATAAGACAGACTTGGATAGTCATACTAATTCCCATTCTTTTCCCGAGTAGGCA
192 TTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCA
* * * * * * * * **
422547 CCACAAACATAGTCTTCTTATAAGGATACACGATACTGACACTTTGGTTTCGCAAGAAAGGCTTT
257 CCATAAACGTAGTCTTCTCATTAGGATAGAAGATATTAATGCTTTGGTTTCGCAAGAAAGGCTTT
* * * **
422612 CTTCT-ATCCAATTTTTATAATGTCTAAGTTCGTGCATCAAATGAGAGAAACATGGATTCTAGTA
322 CTTCTCATCCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGTCAAACATGGATTCTAGTA
* * *
422676 ATGATCTTCATTCATTTGGTGATTAGGCACTCTAAACACATTCT-CTCCATTAGGGTAAATGATA
387 ATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCT-CATTAGGATAAATGATA
* *
422740 TTGATGATTTTCTTTTATATGAAAAT-
451 TTGATGATTTTCTTTTGTATGGAAATC
* * * * * * *
422766 GTTTCTTTTGCCCTTTTTTTCATAAAATCAAAGTTCATCCCTTTAACAAGGCAAGCACT-ACTTC
1 TTTTC-TTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGA-TTC
* * * * *
422830 TCGTAACGGTCTCCATTCCTTTCAAGATTGTGAACCAAAAATAGATTCCCTTCATTAGGATACAT
64 TCATAACAGTCTCCATTCTTTTCAAGATTGTGAACCAAAAACACATTCCCTTCATTAGGATACAT
* * * *
422895 GACATTGATGCTTTAGTGTCGCAAGAAAAGCTTTTCTTTCATCCGTTTTTGTTAGAGTCAAAGTT
129 GACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGTTACAATCAAAGTT
* * * * * *
422960 TGTGTCTTAAATAAGATAAACAGGAGTAGTCATACTAATCCCCATTATTTTCAAGATTAGGCACC
194 TGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACC
* ** * *
423025 ATAAACGTAGTCTTCGCCATAAATAGGAGTAG-TCATATTAATGCTTTGGATTT-GTAAAAAAGG
259 ATAAACGTAGTCTTC-TCAT---TAGGA-TAGAAGATATTAATGCTTTGG-TTTCGCAAGAAAGG
* * * *
423088 CTTTCTTCTCA-CCAATTTTTGAAAAGTCTAAGTTCGTGCCTCAATTGGGGCAAACATGGATTCT
318 CTTTCTTCTCATCCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGTCAAACATGGATTCT
* * *
423152 AGTAATGATCTTCATTCATTTTGTGGTTAGGCACTATAAACACATTCTCCTTAGTAGGATAAATG
383 AGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATG
* *
423217 ATATTGATGATTTTCTTTTGCATGAAAATC
448 ATATTGATGATTTTCTTTTGTATGGAAATC
* * * * * * * * * *
423247 TTTTCTTTACTCTATTTTCCTTAAAATAAAAATTTACCCCTTAAATATGACAAGCATCGATTCTT
1 TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTC
* * *
423312 ATAACAGTCTCTATTCTTTTCAAGATT-TAGAACCAAGAACACATTGCCTTCATTAGGATACATG
66 ATAACAGTCTCCATTCTTTTCAAGATTGT-GAACCAAAAACACATTCCCTTCATTAGGATACATG
* * * * * *
423376 ACATTAATGCTTTGGTGCCACAAGAAAAGCTTTTCTTTCAACCGTTTCTGATAGAATCAAAGTTT
130 ACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGTTACAATCAAAGTTT
* * * *
423441 GTTTCTTTAATAAGA-ATAACATGAAGAGTCATACTAATCCCCATTCTTTTCGGGATTAGGCACC
195 GTCTCTTAAATAAGACA-AACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACC
** * * ***
423505 ATAAACGTAGTCTTCTCATTAGGATAGAAGATATTGCTACTTTGGTTTCGCAAAAAACATTTTCT
259 ATAAACGTAGTCTTCTCATTAGGATAGAAGATATTAATGCTTTGGTTTCGCAAGAAAGGCTTTCT
* * * * *
423570 TC-CCTCCAATTTTTGTGAAGTCTAAGTTCGGGCCTCGAATGAGTCAAACAAGGATTCTAGTAAT
324 TCTCATCCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGTCAAACATGGATTCTAGTAAT
* * * * *
423634 GATCTTAATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATCAGGAAAAATAATATTA
389 GATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTG
423699 ATGATTTTCTTTTGTATGGAAATC
454 ATGATTTTCTTTTGTATGGAAATC
423723 TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTC
1 TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTC
* * * * *
423788 ATAATAGTCTCAATCCTTTTCAAGATTATGAA-CAAAAACCACATTCCCTTCATTAAGATACATG
66 ATAACAGTCTCCATTCTTTTCAAGATTGTGAACCAAAAA-CACATTCCCTTCATTAGGATACATG
* * * *
423852 ACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTTAACCGTTTTTGTTACATTCAAGGTTT
130 ACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGTTACAATCAAAGTTT
* * *
423917 CTCTCTTAAATAAGACAAACATGAATAGTCATCCTAATCCCCATTCTTTTGAGGATTAGGCACCA
195 GTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCA
* * ** * * *
423982 TAAACATAATCTTCTCATTAGGATAGAAGATATTGCTGCTTTGGTTTTGCAAAAAATGCTTTCTT
260 TAAACGTAGTCTTCTCATTAGGATAGAAGATATTAATGCTTTGGTTTCGCAAGAAAGGCTTTCTT
* *
424047 C-CCTCCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGTCAAACATGGATTCTAGTACTG
325 CTCATCCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGTCAAACATGGATTCTAGTAATG
* * * *
424111 ATCTTCATTCATTTTGTGATTATGCACTAAAAACACATTCTTCTCATTAGGATAAATGATATTGC
390 ATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGA
* **
424176 TAATTTTCTTTTGCGTGGAAATC
455 TGATTTTCTTTTGTATGGAAATC
* * * * * * *
424199 TTTTCTTTGCTCTATTTTCCTTAAAATCAAAATTCATCACATAGAA-ATGACAAGCATCGATTCT
1 TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTA-AATAAGGCAAGCATTGATTCT
* * * * *
424263 CATAATAGTCTCCATTCTTTTCAAGGTT-TGGAA-C----TCACATTCTCTTCATTATGATACAT
65 CATAACAGTCTCCATTCTTTTCAAGATTGT-GAACCAAAAACACATTCCCTTCATTAGGATACAT
* * * *
424322 GACATTGATGCTTTGGTGTTGTAAGAGAAGCTTTGT-TTTCAACCATTTTTG--ACTGAATCAAA
129 GACATTGATGCTTTGGTGTCGCAAGAAAAGCTTT-TCTTTCAACCGTTTTTGTTAC--AATCAAA
* * * * *
424384 GTTCGTCTCTTTAATAAGACAACCATGAATAGTCATACTAATCTCCATTCATTTCAGGATTAGGC
191 GTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGC
* * *** * * *
424449 ACCATAAACGTAGTCTTTTCATTAGGATAGACGATATTAGCACTTTGGATTCACAAGAAAGGATT
256 ACCATAAACGTAGTCTTCTCATTAGGATAGAAGATATTAATGCTTTGGTTTCGCAAGAAAGGCTT
* * * * *
424514 TCTTCTCA-CCAATTTTTGTAAAGTCCAAGTTCATGCCTCAAATGAGACAATCAGGGATTCTAGT
321 TCTTCTCATCCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGTCAAACATGGATTCTAGT
* *
424578 AATGATCATCATTCATTTTGTGATTAGGAACTATAAACACATTCTCCTCATTAGGATAAATGATA
386 AATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATA
* * * *
424643 TTAATGATTTTCTTTTGAATAGATATC
451 TTGATGATTTTCTTTTGTATGGAAATC
* * ** * *
424670 TTTTCTTTACCCTCTTTTCCTTAAAATCAATTTTCATCCCTTAAATAAGGTAAGCATTGATTCCC
1 TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTC
* * * * * *
424735 GTAACAGTCTTCATTCTTTTCAAGACTGTGAACCAAAAACACATTCCATTCGTTAGGATACTTGA
66 ATAACAGTCTCCATTCTTTTCAAGATTGTGAACCAAAAACACATTCCCTTCATTAGGATACATGA
* * * *
424800 CATTGATGCTTTGATCTTGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGTTACATTCAAAGTTTG
131 CATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGTTACAATCAAAGTTTG
* * * ** *
424865 TCTCTTAAATAAAATAAACATGAATAGTCATAGTAATCCTTATTCTTTTCAGGATTAAGCACCAT
196 TCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCAT
* * * * * * * * *
424930 AAACATAATCTTCTCATTAAGATGGAAGAAATTACTACTTTGGTTTCGCATGAAATGCTTTCTTC
261 AAACGTAGTCTTCTCATTAGGATAGAAGATATTAATGCTTTGGTTTCGCAAGAAAGGCTTTCTTC
* * * *
424995 -CCTCTAACTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGTCAAACATGGATTCTAGTAATGA
326 TCATCCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGTCAAACATGGATTCTAGTAATGA
* *
425059 TCTTTATTCATTTTGTGATTAGGCACTGTAAACACATTCTCCTCATTAGGATAAATGATATT
391 TCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATT
425121 TGTTAGGATC
Statistics
Matches: 5654, Mismatches: 870, Indels: 204
0.84 0.13 0.03
Matches are distributed among these distances:
469 2 0.00
470 2 0.00
471 388 0.07
472 18 0.00
473 629 0.11
474 1048 0.19
475 925 0.16
476 2212 0.39
477 28 0.00
478 2 0.00
479 5 0.00
480 382 0.07
481 13 0.00
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (477 bp):
TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTC
ATAACAGTCTCCATTCTTTTCAAGATTGTGAACCAAAAACACATTCCCTTCATTAGGATACATGA
CATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGTTACAATCAAAGTTTG
TCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCAT
AAACGTAGTCTTCTCATTAGGATAGAAGATATTAATGCTTTGGTTTCGCAAGAAAGGCTTTCTTC
TCATCCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGTCAAACATGGATTCTAGTAATGA
TCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGAT
GATTTTCTTTTGTATGGAAATC
Found at i:424155 original size:158 final size:158
Alignment explanation
Indices: 423515--424176 Score: 372
Period size: 159 Copynumber: 4.2 Consensus size: 158
423505 ATAAACGTAG
*
423515 TCTTCTCATTAGGATAGAAGATATTGCTACTTTGGTTTCGCAAAAAA--CATTTTCTTCCCTCCA
1 TCTTCTCATTAGGATAGAAGATATTGCTGCTTTGGTTTCGCAAAAAATGC-TTTTCTTCCCTCCA
* * * * * *
423578 ATTTTTGTGAAGTCTAAGTTCGGGCCTCGAATGAGTCAAACAAGGATTCTAGTAATGATCTTAAT
65 ATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATAAGTCAAACATGGATTCTA-TAATGATCTTCAT
*
423643 TCATTTTGTGATTAGGCACTATAAACACAT
129 TCATTTTGTGATTAGGCACTAAAAACACAT
* * * * ** * ** * * ** **
423673 TCTCCTCATCAGGA-AAAATAATATTAATGATTTTCTTTTGTATGGAAAT-CTTTTCTTTGC-CC
1 TCTTCTCATTAGGATAGAA-GATATTGCTGCTTTGGTTTCGCA-AAAAATGCTTTTCTTCCCTCC
* * * * * * * * *
423735 TATTTTCCT-TAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCATAAT-AGTC-
64 AATTTT--TGTAAAGTCTAAGTTCGTGCCTCAAATAAGTCAAACATGGATTCT-ATAATGA-TCT
* * ** * *
423797 TCAATCCTTTTCAAGATTATGAAC-AAAAACCACAT
125 TCATTCATTTT-GTGATTAGGCACTAAAAA-CACAT
* * * * * * * * ****
423832 TC-CCTTCATTAAGATACATGACATTGATGCTTTGGTGTCACAAGAAAA-GCTTTTCTTTTAACC
1 TCTTC-TCATTAGGATAGAAGATATTGCTGCTTTGGTTTCGCAA-AAAATGCTTTTCTTCCCTCC
* * * * * * ** *
423895 -GTTTTTGTTACATTC-AAGGTTTC-T-CTCTTAAATAAGACAAACATGAATAGTC-ATCCTAAT
64 AATTTTTG-TAAAGTCTAA-G-TTCGTGC-CTCAAATAAGTCAAACATGGAT--TCTATAATGAT
** * * * * *
423955 CCCCATTC-TTTTGAGGATTAGGCACCATAAACATAA
123 CTTCATTCATTTTG-TGATTAGGCACTAAAAACACAT
*
423991 TCTTCTCATTAGGATAGAAGATATTGCTGCTTTGGTTTTGCAAAAAATGC-TTTCTTCCCTCCAA
1 TCTTCTCATTAGGATAGAAGATATTGCTGCTTTGGTTTCGCAAAAAATGCTTTTCTTCCCTCCAA
* *
424055 TTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGTCAAACATGGATTCTAGTACTGATCTTCATT
66 TTTTTGTAAAGTCTAAGTTCGTGCCTCAAATAAGTCAAACATGGATTCTA-TAATGATCTTCATT
*
424120 CATTTTGTGATTATGCACTAAAAACACAT
130 CATTTTGTGATTAGGCACTAAAAACACAT
424149 TCTTCTCATTAGGATA-AATGATATTGCT
1 TCTTCTCATTAGGATAGAA-GATATTGCT
424177 AATTTTCTTT
Statistics
Matches: 365, Mismatches: 104, Indels: 70
0.68 0.19 0.13
Matches are distributed among these distances:
156 2 0.01
157 10 0.03
158 140 0.38
159 191 0.52
160 20 0.05
161 2 0.01
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.37
Consensus pattern (158 bp):
TCTTCTCATTAGGATAGAAGATATTGCTGCTTTGGTTTCGCAAAAAATGCTTTTCTTCCCTCCAA
TTTTTGTAAAGTCTAAGTTCGTGCCTCAAATAAGTCAAACATGGATTCTATAATGATCTTCATTC
ATTTTGTGATTAGGCACTAAAAACACAT
Found at i:425444 original size:13 final size:13
Alignment explanation
Indices: 425426--425452 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
425416 ACATGTTGCT
425426 TTGTATCGATACA
1 TTGTATCGATACA
425439 TTGTATCGATACA
1 TTGTATCGATACA
425452 T
1 T
425453 GTTCATTGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:425449 original size:33 final size:32
Alignment explanation
Indices: 425407--425471 Score: 112
Period size: 33 Copynumber: 2.0 Consensus size: 32
425397 ACACACCCGA
*
425407 TGTATCGATACATGTTGCTTTGTATCGATACAT
1 TGTATCGATACATGTT-CATTGTATCGATACAT
425440 TGTATCGATACATGTTCATTGTATCGATACAT
1 TGTATCGATACATGTTCATTGTATCGATACAT
425472 GGACAAATTG
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
32 15 0.48
33 16 0.52
ACGTcount: A:0.26, C:0.15, G:0.17, T:0.42
Consensus pattern (32 bp):
TGTATCGATACATGTTCATTGTATCGATACAT
Found at i:425483 original size:21 final size:19
Alignment explanation
Indices: 425436--425493 Score: 80
Period size: 19 Copynumber: 2.9 Consensus size: 19
425426 TTGTATCGAT
*
425436 ACATTGTATCGATACATGT
1 ACATTGTATCGATACATGG
*
425455 TCATTGTATCGATACATGG
1 ACATTGTATCGATACATGG
425474 ACAAATTGTATCGATACATG
1 AC--ATTGTATCGATACATG
425494 AAACTGGCAG
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
19 18 0.53
21 16 0.47
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.34
Consensus pattern (19 bp):
ACATTGTATCGATACATGG
Found at i:425582 original size:33 final size:33
Alignment explanation
Indices: 425522--425585 Score: 87
Period size: 33 Copynumber: 1.9 Consensus size: 33
425512 CTATCACTAT
*
425522 TTGTATCGATACATGGTACAATGTATCGATATA
1 TTGTATCGATACATGGTACAATATATCGATATA
425555 TTGTATCGATACATGAAG-A-AATATATCGATA
1 TTGTATCGATACATG--GTACAATATATCGATA
425586 CATAGCTTGT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
33 26 0.93
34 1 0.04
35 1 0.04
ACGTcount: A:0.38, C:0.11, G:0.17, T:0.34
Consensus pattern (33 bp):
TTGTATCGATACATGGTACAATATATCGATATA
Found at i:427457 original size:13 final size:13
Alignment explanation
Indices: 427439--427466 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
427429 ACAATTCATC
427439 ATGTATCGATACA
1 ATGTATCGATACA
427452 ATGTATCGATACA
1 ATGTATCGATACA
427465 AT
1 AT
427467 ATGCCATGTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.39, C:0.14, G:0.14, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:427463 original size:33 final size:32
Alignment explanation
Indices: 427417--427485 Score: 95
Period size: 33 Copynumber: 2.1 Consensus size: 32
427407 CCGTTAGAAG
*
427417 CAATGTATTGATACAAT-TCATCATGTATCGATA
1 CAATGTATCGATACAATATC--CATGTATCGATA
427450 CAATGTATCGATACAATATGCCATGTATCGATA
1 CAATGTATCGATACAATAT-CCATGTATCGATA
427483 CAA
1 CAA
427486 ACAGTGGTAG
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
33 31 0.94
34 1 0.03
35 1 0.03
ACGTcount: A:0.38, C:0.17, G:0.13, T:0.32
Consensus pattern (32 bp):
CAATGTATCGATACAATATCCATGTATCGATA
Found at i:429319 original size:22 final size:21
Alignment explanation
Indices: 429286--429335 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 21
429276 TTTTTTAATG
*
429286 ATTTT-AA-TGAAAAATGAAGT
1 ATTTTGAAGTGAAAAAT-AAGA
429306 ATTTTGAAGTGAAAAATAAGA
1 ATTTTGAAGTGAAAAATAAGA
*
429327 AATTTGAAG
1 ATTTTGAAG
429336 AAGATTTGAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
20 5 0.19
21 13 0.50
22 8 0.31
ACGTcount: A:0.50, C:0.00, G:0.18, T:0.32
Consensus pattern (21 bp):
ATTTTGAAGTGAAAAATAAGA
Found at i:429332 original size:21 final size:22
Alignment explanation
Indices: 429293--429335 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
429283 ATGATTTTAA
* *
429293 TGAAAAATGAAGTATTTTGAAG
1 TGAAAAATGAAGAAATTTGAAG
429315 TGAAAAAT-AAGAAATTTGAAG
1 TGAAAAATGAAGAAATTTGAAG
429336 AAGATTTGAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 11 0.58
22 8 0.42
ACGTcount: A:0.51, C:0.00, G:0.21, T:0.28
Consensus pattern (22 bp):
TGAAAAATGAAGAAATTTGAAG
Found at i:435533 original size:13 final size:13
Alignment explanation
Indices: 435515--435546 Score: 64
Period size: 13 Copynumber: 2.5 Consensus size: 13
435505 TCGTTAGAAG
435515 CAATGTATCGATA
1 CAATGTATCGATA
435528 CAATGTATCGATA
1 CAATGTATCGATA
435541 CAATGT
1 CAATGT
435547 GCCATGTATC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.38, C:0.16, G:0.16, T:0.31
Consensus pattern (13 bp):
CAATGTATCGATA
Found at i:435965 original size:23 final size:23
Alignment explanation
Indices: 435938--435992 Score: 74
Period size: 23 Copynumber: 2.4 Consensus size: 23
435928 CTAATATTTA
* *
435938 AAGTCTAAGTTTATGCCTCAAAT
1 AAGTCAAACTTTATGCCTCAAAT
*
435961 AAGTCAAACTTTGTGCCTCAAAT
1 AAGTCAAACTTTATGCCTCAAAT
*
435984 GAGTCAAAC
1 AAGTCAAAC
435993 ATGGATTCTA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.36, C:0.20, G:0.15, T:0.29
Consensus pattern (23 bp):
AAGTCAAACTTTATGCCTCAAAT
Found at i:437381 original size:436 final size:430
Alignment explanation
Indices: 436525--437395 Score: 1066
Period size: 436 Copynumber: 2.0 Consensus size: 430
436515 CACATTCTAC
*
436525 TCATTAGAATAAATGATATTGATGATTTTCTTTTGGATCGAAATCTTTGCCCTACTTTCCTTAAA
1 TCATTAGAATAAATGATATTGATGATTTTCTTTTGCATCGAAATCTTTGCCCTACTTTCCTTAAA
* * * * * * *
436590 ATCAAAATTCATCCCTTAAATATGACCAGCATCGTTCTCATAGCAGTCTCCATTCTTTTTATGAT
66 ATCAAAATTCATCCCTTAAACAAGACAAGCATCGTTCTCATAACAATCTCCATTCTTTTCAAGAT
* *
436655 TAGGAGCCAAGAACACATTACCTTAATAAGGATAAAAGACATTAATGCTCTGGTGTCGCAAGAAA
131 TAGGAACCAAAAACACATTACCTTAATAAGGATAAAAGACATTAATGCTCTGGTGTCGCAAGAAA
* * * *
436720 AACTTTTCTTTACACCAGTTTTGATAAAATCTAAGTTTATCTGTTAAATAAGACTAACATGAATA
196 AACTTTTCTTTACACCACTTTTGATAAAATCAAAGTTTATCTCTTAAATAAGACAAACATGAATA
* * ** * * * *
436785 GCCATACTAATCCTATTGTTTTCCCGAGTAGGCGCCATAAACATAGTCTTCTTAAAAGGATACAC
261 GCCATACTAATCCCATTCTTTTCAAGAGTAGGCACCATAAACATAATCTTCTCAAAAGGATAAAC
* *
436850 GATATTGATGCTTTGATTTCACAAGAAAAGCTTTCTTCTATCCAATTTTTATAATGTCTAAGTTC
326 GATATTGATGCTTTGATTTCACAAGAAAAGCTTTCTTCCATCCAATTTTTATAAAGTCTAAGTTC
436915 GTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCT
391 GTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCT
** * *
436955 TCATTAGGGTAAATGATATTGATGATTTTCTTTTGCATGGAAATGTTTCTTTTGCCCTATTTTCC
1 TCATTAGAATAAATGATATTGATGATTTTCTTTTGCATCGAAA----TC-TTTGCCCTACTTTCC
* * * *
437020 TTAAAATCAAAGTTCATCCCTTTAACAAGGCAAGCA-CTGCTTCTCATAATAATCTCCATTCTTT
61 TTAAAATCAAAATTCATCCCTTAAACAAGACAAGCATC-G-TTCTCATAACAATCTCCATTCTTT
* * * * * *
437084 TCAAGATT-GGAAACCAAAAACACATTCCCTTTATTAGGATAAATGACATTGATGCTTTGGTGTC
124 TCAAGATTAGG-AACCAAAAACACATTACCTTAATAAGGATAAAAGACATTAATGCTCTGGTGTC
* ** * * *
437148 GCAAGAAAAGCTTTTCTTT-CAACC-CTTTTTTTACATTCAAAGTTTGTCTCTTAAATAAGACAA
188 GCAAGAAAAACTTTTCTTTAC-ACCACTTTTGATAAAATCAAAGTTTATCTCTTAAATAAGACAA
** * * * *
437211 ATGTGAATCGTCATACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAATCTTCTCAT
252 ACATGAATAGCCATACTAAT-CCCATTCTTTTCAAGAGTAGGCACCATAAACATAATCTTCTCAA
* * * ** * * *
437276 AAGGATAAAGGATATTGCTGCTTTGGTTTCGTAAGAAACGCTTTCTTCCCTCCAATTTTTGTAAA
316 AAGGATAAACGATATTGATGCTTTGATTTCACAAGAAAAGCTTTCTTCCATCCAATTTTTATAAA
* * * *
437341 GTCTAAGTTCGTTCCTCAAATGAGTCAATCATGGATTCTAGTAATGATTT
381 GTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCT
437391 TCATT
1 TCATT
437396 CATTATGTGA
Statistics
Matches: 369, Mismatches: 62, Indels: 14
0.83 0.14 0.03
Matches are distributed among these distances:
430 39 0.11
434 3 0.01
435 94 0.25
436 233 0.63
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.36
Consensus pattern (430 bp):
TCATTAGAATAAATGATATTGATGATTTTCTTTTGCATCGAAATCTTTGCCCTACTTTCCTTAAA
ATCAAAATTCATCCCTTAAACAAGACAAGCATCGTTCTCATAACAATCTCCATTCTTTTCAAGAT
TAGGAACCAAAAACACATTACCTTAATAAGGATAAAAGACATTAATGCTCTGGTGTCGCAAGAAA
AACTTTTCTTTACACCACTTTTGATAAAATCAAAGTTTATCTCTTAAATAAGACAAACATGAATA
GCCATACTAATCCCATTCTTTTCAAGAGTAGGCACCATAAACATAATCTTCTCAAAAGGATAAAC
GATATTGATGCTTTGATTTCACAAGAAAAGCTTTCTTCCATCCAATTTTTATAAAGTCTAAGTTC
GTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCT
Found at i:437813 original size:10 final size:10
Alignment explanation
Indices: 437798--437822 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
437788 AAACGTTTTG
437798 ATTTTCATTC
1 ATTTTCATTC
437808 ATTTTCATTC
1 ATTTTCATTC
437818 ATTTT
1 ATTTT
437823 AGGATAGACT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.20, C:0.16, G:0.00, T:0.64
Consensus pattern (10 bp):
ATTTTCATTC
Found at i:438979 original size:13 final size:13
Alignment explanation
Indices: 438961--438986 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
438951 ATTTTTTTGG
438961 TGTATCGATACAT
1 TGTATCGATACAT
438974 TGTATCGATACAT
1 TGTATCGATACAT
438987 ACTTGGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:441093 original size:21 final size:20
Alignment explanation
Indices: 441064--441106 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
441054 GGCTAGTGTG
*
441064 GGGACTGCCCGGTTGCGACCT
1 GGGACTG-CCGGTCGCGACCT
*
441085 GGGAGTGCCGGTCGCGACCT
1 GGGACTGCCGGTCGCGACCT
441105 GG
1 GG
441107 TGGGTGCTGC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 14 0.70
21 6 0.30
ACGTcount: A:0.09, C:0.30, G:0.44, T:0.16
Consensus pattern (20 bp):
GGGACTGCCGGTCGCGACCT
Found at i:441397 original size:21 final size:21
Alignment explanation
Indices: 441373--441419 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
441363 TTTGAAGCTG
441373 ATTTTG-A-TGAAAAACGAAGT
1 ATTTTGAAGTGAAAAAC-AAGT
*
441393 AATTTGAAGTGAAAAACAAGT
1 ATTTTGAAGTGAAAAACAAGT
441414 ATTTTG
1 ATTTTG
441420 CAAAAGATTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
20 5 0.22
21 10 0.43
22 8 0.35
ACGTcount: A:0.45, C:0.04, G:0.19, T:0.32
Consensus pattern (21 bp):
ATTTTGAAGTGAAAAACAAGT
Found at i:441558 original size:13 final size:13
Alignment explanation
Indices: 441540--441578 Score: 60
Period size: 13 Copynumber: 3.0 Consensus size: 13
441530 ATAAACAACC
*
441540 TGTATCGATACAG
1 TGTATCGATACAA
*
441553 TGTATCAATACAA
1 TGTATCGATACAA
441566 TGTATCGATACAA
1 TGTATCGATACAA
441579 AGAAAAATGT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:449151 original size:476 final size:476
Alignment explanation
Indices: 448151--450006 Score: 2431
Period size: 476 Copynumber: 3.9 Consensus size: 476
448141 AAGATGCTAA
**
448151 CAATTTTTGTTTAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTC
1 CAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTC
** * *
448216 ATTCATTTTGTGCTTAGGCACTACAAACACATTCCCCTCGTTAGGATATATGATATTAATGATTT
66 ATTCATTTTGTGCTTAGGCACTACAAACACATTCCCCTAATTAGGATAAATGATATTGATGATTT
* * * * **
448281 TCTTTGGCATCAAAATCTTTTCTTTGCCCTATTTTCTTAAAAATCAAAATTCATCCCTTAAGCAT
131 TCTTTTGCATCGAAATCTTTTCTTTGCCCTATTTTCCTAAAAATCAAAATTCAACCCTTAAATAT
* * * * * *
448346 GATAAGCATCGATTCTTGTAACAGTCTCCATCCTTCTCAAGATTAGGAACCAA-ATGCACATTCC
196 GACAAGCATCGAATCTCGTAACAGTCTCCATTCTTTTCAAGATTAGGAACCAAGA-GCACATTCA
* * *
448410 CTTCAATAGGATACATGACATTGATCCTTTGTTGTCGCAAAAAAAAAAAGC-TTTCTTTCTA-TC
260 CTTCAATAGGATACAAGACATTGATGCTTTGGTGTCGC----AAAAAAAGCTTTTCTTTCTACT-
* *
448473 ATTTTTGATGGAATCAAAGTTTGCTCTCTTAAATAAGACAGATATGAATAGTCATACTAAT-CTC
320 ATTTTTGATGGAATCAAAGTTTGCTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCTC
* * *
448537 ATTCTTTTTTGGATTAGGCACCATAAACGTAGTCTTCTCATTAGAGTAGACGATACTGATGCTTT
385 ATT-ATTTTTGGATTAGGCACCATAAACGTAGTCTTCTCATTAGGGTAGACGATATTGATGCTTT
*
448602 GGTTTCGCAAGAAAGGATTTCTTCCCAC
449 GGTTTCGCAAGAAAGGCTTTCTTCCCAC
* * * * * * *
448630 CAATTTTTGTAAAGTCTAAGTTCATGCCTAAAATGAAATAAACATGTATTCTAGAAATGATCTTT
1 CAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTC
* * * *
448695 ATTCATTTTGTGCTTAGGCATTACAAACACATTCCCCTAATTCGGATAAATAATATGGATGATTT
66 ATTCATTTTGTGCTTAGGCACTACAAACACATTCCCCTAATTAGGATAAATGATATTGATGATTT
* * * *
448760 TTTTTTGTATCGAAATCTTTTCTTTGCCCTATTTTCCTAAAAATTAAAATTCAACTCTTAAATAT
131 TCTTTTGCATCGAAATCTTTTCTTTGCCCTATTTTCCTAAAAATCAAAATTCAACCCTTAAATAT
* * * * * * *
448825 GACAAGCATTGAACCTAGTAATAGTCTTCATTCTTTTCAAGATTGGGAACCAAGAGCACATTCAT
196 GACAAGCATCGAATCTCGTAACAGTCTCCATTCTTTTCAAGATTAGGAACCAAGAGCACATTCAC
* * ** *
448890 TTCATTAGGATACAAGACATTGATGCTTTGGTGTTGCATGAAAAGCTTTTCTTTCCA-TAGTTTT
261 TTCAATAGGATACAAGACATTGATGCTTTGGTGTCGCAAAAAAAGCTTTTCTTTCTACTA-TTTT
* * *
448954 TGATAGAATCAAAGTTTACTCTCTTAAATAAGACAAACATGAATTGTCATACTAATCCTCATTAT
325 TGATGGAATCAAAGTTTGCTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCTCATTAT
** * *
449019 TTTTGGGGTAGGCACCACAAACGTAATCTTCTCATTAGGGTAGACGATATTGATGCTTTGGTTTC
390 TTTTGGATTAGGCACCATAAACGTAGTCTTCTCATTAGGGTAGACGATATTGATGCTTTGGTTTC
*
449084 GTAAGAAAGGCTTTCTTCCCAC
455 GCAAGAAAGGCTTTCTTCCCAC
* * * * *
449106 CAATATTTGCAAAGTCTAAGGTCCTGCCTCAAGTGAGACAAACATGGATTCTAGTAATGATCTTC
1 CAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTC
* * *
449171 ATTCATTTTTTGCTTAGGCACTACAAACACATTCCCCTAGTTAGGATAAATGATATTGATAATTT
66 ATTCATTTTGTGCTTAGGCACTACAAACACATTCCCCTAATTAGGATAAATGATATTGATGATTT
** *
449236 T-TTTTGCATCGAAATCTTTTCTTTGCTTTATTTTCCTAAAAATCAAAATTCAACTCTTAAATAT
131 TCTTTTGCATCGAAATCTTTTCTTTGCCCTATTTTCCTAAAAATCAAAATTCAACCCTTAAATAT
* * *
449300 GACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAGAGCAGATTCAC
196 GACAAGCATCGAATCTCGTAACAGTCTCCATTCTTTTCAAGATTAGGAACCAAGAGCACATTCAC
* * * * *
449365 TTCATTAGGATACATGACATTGATGCTTTGGTGTTGCAAAAAAAGCTTTGCTTTCTACTGTTTTT
261 TTCAATAGGATACAAGACATTGATGCTTTGGTGTCGCAAAAAAAGCTTTTCTTTCTACTATTTTT
* * * *
449430 GATGGAATCAAAGTTTGCTCTCTTAAATAAGACAAACATGAAAAATCATACTAATCCCCATTCTT
326 GATGGAATCAAAGTTTGCTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCTCATTATT
* * * * *
449495 TTTCGAATTGGGCACCATAAACGTAGTCTTCTAATTAGGGTAGACAATATTGATGCTTTAGTTTC
391 TTT-GGATTAGGCACCATAAACGTAGTCTTCTCATTAGGGTAGACGATATTGATGCTTTGGTTTC
*
449560 GCAAGAACGGCTTTCTTCCCAC
455 GCAAGAAAGGCTTTCTTCCCAC
* *
449582 CAATTTTTGTAAAGTCTAAGTTCGTGTCC-CAAATGAGGCAAACACGGATTCTAGTAATGATCTT
1 CAATTTTTGTAAAGTCTAAGTTCGTG-CCTCAAATGAGACAAACATGGATTCTAGTAATGATCTT
* * * * *
449646 CATTCAGTTTGTGATAAGCCACTATAAACACATT-CCCTAATTCA-GATAAAATGATATTGATGA
65 CATTCATTTTGTGCTTAGGCACTACAAACACATTCCCCTAATT-AGGAT-AAATGATATTGATGA
* * * *
449709 TTTTCTTTTGCAT-GAAAATCTTTTCTTTGTCCTATTTTCCTAGAAATGAAAATTCATCCCTTAA
128 TTTTCTTTTGCATCG-AAATCTTTTCTTTGCCCTATTTTCCTAAAAATCAAAATTCAACCCTTAA
* * * *
449773 GTATGACAAGCAT-TAATTCTCGTAACAGTCTCCATTCATTTCAAGATTAGGAACCAAGAACACA
192 ATATGACAAGCATCGAA-TCTCGTAACAGTCTCCATTCTTTTCAAGATTAGGAACCAAGAGCACA
* * *
449837 TTCCCTTCAATAGGATACAAGACATTGATGCTTTGGTGTCACAAAAAAAGCTTTTCTTTCTACCA
256 TTCACTTCAATAGGATACAAGACATTGATGCTTTGGTGTCGCAAAAAAAGCTTTTCTTTCTACTA
** * * *
449902 TTTTTGATCTAATCAAAGTTTGCTCTCTTAAATAAGACAAACATTAATAGCCATACTACTCC-CT
321 TTTTTGATGGAATCAAAGTTTGCTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCTC-
* * *
449966 ATTCTTTTTCGGATTAGGCACTATAAATGTAGTCTTCTCAT
385 ATTATTTTT-GGATTAGGCACCATAAACGTAGTCTTCTCAT
450007 CAGTGTAGTC
Statistics
Matches: 1200, Mismatches: 164, Indels: 28
0.86 0.12 0.02
Matches are distributed among these distances:
475 252 0.21
476 435 0.36
477 261 0.22
479 251 0.21
480 1 0.00
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (476 bp):
CAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTC
ATTCATTTTGTGCTTAGGCACTACAAACACATTCCCCTAATTAGGATAAATGATATTGATGATTT
TCTTTTGCATCGAAATCTTTTCTTTGCCCTATTTTCCTAAAAATCAAAATTCAACCCTTAAATAT
GACAAGCATCGAATCTCGTAACAGTCTCCATTCTTTTCAAGATTAGGAACCAAGAGCACATTCAC
TTCAATAGGATACAAGACATTGATGCTTTGGTGTCGCAAAAAAAGCTTTTCTTTCTACTATTTTT
GATGGAATCAAAGTTTGCTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCTCATTATT
TTTGGATTAGGCACCATAAACGTAGTCTTCTCATTAGGGTAGACGATATTGATGCTTTGGTTTCG
CAAGAAAGGCTTTCTTCCCAC
Found at i:450015 original size:17 final size:17
Alignment explanation
Indices: 449993--450031 Score: 69
Period size: 17 Copynumber: 2.3 Consensus size: 17
449983 GCACTATAAA
449993 TGTAGTCTTCTCATCAG
1 TGTAGTCTTCTCATCAG
450010 TGTAGTCTTCTCATCAG
1 TGTAGTCTTCTCATCAG
*
450027 GGTAG
1 TGTAG
450032 ACAGGATTGA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.18, C:0.21, G:0.23, T:0.38
Consensus pattern (17 bp):
TGTAGTCTTCTCATCAG
Found at i:450221 original size:221 final size:219
Alignment explanation
Indices: 449823--450227 Score: 576
Period size: 221 Copynumber: 1.8 Consensus size: 219
449813 TCAAGATTAG
* * * *
449823 GAACCAAGAACACATTCCCTTCAATAGGATACAAGACATTGATGCTTTGGTGTCACAAAAAAAGC
1 GAACCAAGAACACATTCACTTCAATAGGATACAAGAAAATGATGCTTGGGTGTCACAAAAAAAGC
* ** * *
449888 TTTTCTTTCTACCATTTTTGATCTAATCAAAGTTTGCTCTCTTAAATAAGACAAACATTAATAGC
66 TTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTACTCTCTTAAATAAGACAAACATGAATAGC
* * * *
449953 CATACTACTCCCTATTCTTTTTCGGATTAGGCACTATAAATGTAGTCTTCTCATCAGTGTAGTCT
131 CATACTAATCCCCATTCTTTTTCGGATTAGGCACCATAAACGTAGTCTTCTCATCAGTGTAGTCT
450018 TCTCATCAGGGTAGACAGGATTGA
196 TCTCATCAGGGTAGACAGGATTGA
* * * * ** *
450042 GAACTAAGAGCACATTCACTTCATTAGGATACATGAAAATGATGCTTGGGTGTTGCAAGAAAAGC
1 GAACCAAGAACACATTCACTTCAATAGGATACAAGAAAATGATGCTTGGGTGTCACAAAAAAAGC
* *
450107 TTTTTTTTTCCCACCGTTTTTGATAGAATCAAAGTTTACTCTCTTAAATAAGACAAACATGAATA
66 -TTTTCTTT-CCACCATTTTTGATAGAATCAAAGTTTACTCTCTTAAATAAGACAAACATGAATA
* *
450172 GTCATACTAATCCCCATTCTTTTTTGGATTAGGCACCATAAACGTAGTCTTCTCAT
129 GCCATACTAATCCCCATTCTTTTTCGGATTAGGCACCATAAACGTAGTCTTCTCAT
450228 TCTGTAGACG
Statistics
Matches: 160, Mismatches: 24, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
219 54 0.34
220 7 0.04
221 99 0.62
ACGTcount: A:0.32, C:0.20, G:0.15, T:0.34
Consensus pattern (219 bp):
GAACCAAGAACACATTCACTTCAATAGGATACAAGAAAATGATGCTTGGGTGTCACAAAAAAAGC
TTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTACTCTCTTAAATAAGACAAACATGAATAGC
CATACTAATCCCCATTCTTTTTCGGATTAGGCACCATAAACGTAGTCTTCTCATCAGTGTAGTCT
TCTCATCAGGGTAGACAGGATTGA
Found at i:451666 original size:477 final size:477
Alignment explanation
Indices: 450036--451666 Score: 2218
Period size: 477 Copynumber: 3.4 Consensus size: 477
450026 GGGTAGACAG
* * * * * * * *
450036 GATTGAGAACTAAGAGCACATTCACTTCATTAGGATACATGAAAATGATGCTTGGGTGTTGCAAG
1 GATTGGGAACCAAGAACACATTCACTTCATTAGGATACAAGACATTAATGCTTTGGTGTTGCAAG
* * *
450101 AAAAGCTTTTTTTTTCCCACCGTTTTTGATAGAATCAAAGTTTACTCTCTTAAATAAGACAAACA
66 AAAAGC-TTTTCTTTCCTACCATTTTTGATAGAATCAAAGTTTACTCTCTTAAATAAGACAAACA
*
450166 TGAATAGTCATACTAATCCCCATTCTTTTTTGGATTAGGCACCATAAACGTAGTCTTCTCATTC-
130 TGAATAGTCATACTAATCCCCATTCTTTTTCGGATTAGGCACCATAAACGTAGTCTTCTCA-TCA
* * *
450230 -TGTAGACGATATTGATGCTTTGGGGTT-GCTAGAAAGGCTTTCTTTCCACCAATTTTCAGTAAA
194 GGGTAGACGATATTGATGCTTT-GGCTTCGCTAGAAAGGCTTTC-TTCCACCAATTTT-TGTAAA
* *
450293 GTCTATGTTTGTGCCTCAAATGAGACAAACATGGATTCTGGTAATGATCTTCATTCATTTTGTCA
256 GTCTATGTTCGTGCCTCAAATGAGACAAACATGGATTCTGGTAATGATCTTCATTCATTTTGTGA
* * *
450358 TAAGGCACTATAAACACGTTATCCTTATTCGGATAAATGATATTGATGATTTTCTTTTGCATGGA
321 TAAGGCACTATAAACACATTCTCCTCATTCGGATAAATGATATTGATGATTTTCTTTTGCATGGA
* * *
450423 AATCTTTTCTTTGTCCTATTTTCCTTAAAGTCAAAATTCATCCCTTAAGTATGACAAGTATCGAT
386 AATCTTTTCTTTGTCCTATTTTCCTAAAAATCAAAATTCATCCCTTAAGTATGACAAGCATCGAT
* *
450488 TCTTGTAATAGTCTCCATTCTTTTCAA
451 TCTCGTAACAGTCTCCATTCTTTTCAA
* ** * * *
450515 GATTGGGAACTAAGAACACATTTTCTTCAATAGGATACATGTCATTAATGCTTTGGTGTTGCAAG
1 GATTGGGAACCAAGAACACATTCACTTCATTAGGATACAAGACATTAATGCTTTGGTGTTGCAAG
* * *
450580 AAAAGCTTTTCTTTCC-ACCATTTTTGATAGAATCAAAGTTCACTCTCTGAAATAAGACAAAAAT
66 AAAAGCTTTTCTTTCCTACCATTTTTGATAGAATCAAAGTTTACTCTCTTAAATAAGACAAACAT
* * * * * * *
450644 CAATAGTCACAATAATCCCCATTCTTTTTCGGATTAGGCACCATAAAGGTAGTATTCTCATTACG
131 GAATAGTCATACTAATCCCCATTCTTTTTCGGATTAGGCACCATAAACGTAGTCTTCTCATCAGG
* * * *
450709 GTAGACAATATTGATGCTTTGGCGTCGCTAGAAAAGCTTTCTTCCCACCAATTTTTCTAAAGTCT
196 GTAGACGATATTGATGCTTTGGCTTCGCTAGAAAGGCTTTCTT-CCACCAATTTTTGTAAAGTCT
* *
450774 ATGTTCGTGCCACAAATGAGACAAACATGGATTCTGGTAATGATCTTCATTCATTTTGTG-TCTA
260 ATGTTCGTGCCTCAAATGAGACAAACATGGATTCTGGTAATGATCTTCATTCATTTTGTGAT-AA
* * * * * *
450838 GGCACTACAAACACATTCCCCTCAATAGGATCAATGATATTGATGATTTTCTTTTGCATCGAAAT
324 GGCACTATAAACACATTCTCCTCATTCGGATAAATGATATTGATGATTTTCTTTTGCATGGAAAT
* * * * ** *
450903 CTTTTCTTTGCCCTATTTTCCTAAAATTCAAAATTCAACTCTTAAAAAAGACAAGCATCGATTCT
389 CTTTTCTTTGTCCTATTTTCCTAAAAATCAAAATTCATCCCTTAAGTATGACAAGCATCGATTCT
* *
450968 CGTAACAGTCTCTATTCTTTTTAA
454 CGTAACAGTCTCCATTCTTTTCAA
*
450992 GATTGGGAACCAAGAGCACATTCACTTCATTAGGATACAAGACATTAATGCTTTGGTGTTGCAAG
1 GATTGGGAACCAAGAACACATTCACTTCATTAGGATACAAGACATTAATGCTTTGGTGTTGCAAG
* * * *
451057 AAATGCTTTTCTTTCCT-CCGTTTTTGATAGAATCAAAGTTTACTCTCTCAAATAAGGCAAACAT
66 AAAAGCTTTTCTTTCCTACCATTTTTGATAGAATCAAAGTTTACTCTCTTAAATAAGACAAACAT
* * * * *
451121 GAATAGTCATAGTCATCCCCATTCTTTTTTGAATTAGGCACCATAAACGTAGTCTTCTCATTAGG
131 GAATAGTCATACTAATCCCCATTCTTTTTCGGATTAGGCACCATAAACGTAGTCTTCTCATCAGG
* * * * *
451186 GTAGATGATATTGATGCTTTGGTTTCACAAGAAAGGCTTTCTTCCTACGAATTTTTGTAAAGTCT
196 GTAGACGATATTGATGCTTTGGCTTCGCTAGAAAGGCTTTCTTCC-ACCAATTTTTGTAAAGTCT
* * * * * *
451251 AAGTTCGTGCGTCAAAAGAGACAAACATGGATTTTGGTAATGATCATCATTCATTTTCTGATAAG
260 ATGTTCGTGCCTCAAATGAGACAAACATGGATTCTGGTAATGATCTTCATTCATTTTGTGATAAG
*
451316 TCACTATAAACACATTCTCCTCATTCGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATC
325 GCACTATAAACACATTCTCCTCATTCGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATC
* *
451381 TTTTCTTTGTCCTATTTTCCTAAAAATCAAAATTCATCCCTTAAGTATGAGAAGCATCAATTCTC
390 TTTTCTTTGTCCTATTTTCCTAAAAATCAAAATTCATCCCTTAAGTATGACAAGCATCGATTCTC
451446 GTAACAGTCTCCATTCTTTTCAA
455 GTAACAGTCTCCATTCTTTTCAA
* * * **
451469 GATTGGGAACCAACAACACATTCCCTTCGA-TAGGATACAAGACATTGATGCTTTGGTGTCCCAA
1 GATTGGGAACCAAGAACACATTCACTTC-ATTAGGATACAAGACATTAATGCTTTGGTGTTGCAA
* * ** *
451533 AAAAAGCTTCTC-TTCCTACCATTTTTGATCTAATCAAAGTTTGCTCTCTTAAATAAGACAAACA
65 GAAAAGCTTTTCTTTCCTACCATTTTTGATAGAATCAAAGTTTACTCTCTTAAATAAGACAAAC-
* * *
451597 AT-AATAGTCATACTACTCCCCATTCTTTTTCGGATTAGGCACTATAAATGTAGTCTTCTCATCA
129 ATGAATAGTCATACTAATCCCCATTCTTTTTCGGATTAGGCACCATAAACGTAGTCTTCTCATCA
451661 GGGTAG
194 GGGTAG
451667 TCTTCTCATC
Statistics
Matches: 1006, Mismatches: 135, Indels: 24
0.86 0.12 0.02
Matches are distributed among these distances:
476 9 0.01
477 879 0.87
478 57 0.06
479 61 0.06
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.36
Consensus pattern (477 bp):
GATTGGGAACCAAGAACACATTCACTTCATTAGGATACAAGACATTAATGCTTTGGTGTTGCAAG
AAAAGCTTTTCTTTCCTACCATTTTTGATAGAATCAAAGTTTACTCTCTTAAATAAGACAAACAT
GAATAGTCATACTAATCCCCATTCTTTTTCGGATTAGGCACCATAAACGTAGTCTTCTCATCAGG
GTAGACGATATTGATGCTTTGGCTTCGCTAGAAAGGCTTTCTTCCACCAATTTTTGTAAAGTCTA
TGTTCGTGCCTCAAATGAGACAAACATGGATTCTGGTAATGATCTTCATTCATTTTGTGATAAGG
CACTATAAACACATTCTCCTCATTCGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCT
TTTCTTTGTCCTATTTTCCTAAAAATCAAAATTCATCCCTTAAGTATGACAAGCATCGATTCTCG
TAACAGTCTCCATTCTTTTCAA
Found at i:451668 original size:17 final size:17
Alignment explanation
Indices: 451646--451683 Score: 67
Period size: 17 Copynumber: 2.2 Consensus size: 17
451636 CACTATAAAT
*
451646 GTAGTCTTCTCATCAGG
1 GTAGTCTTCTCATCAAG
451663 GTAGTCTTCTCATCAAG
1 GTAGTCTTCTCATCAAG
451680 GTAG
1 GTAG
451684 ACAAGATTGA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.21, C:0.21, G:0.24, T:0.34
Consensus pattern (17 bp):
GTAGTCTTCTCATCAAG
Found at i:451847 original size:221 final size:219
Alignment explanation
Indices: 451466--451879 Score: 571
Period size: 221 Copynumber: 1.9 Consensus size: 219
451456 CCATTCTTTT
* * * * *
451466 CAAGATTGGGAACCAACAACACATTCCCTTCGATAGGATACAAGACATTGATGCTTTGGTGTCCC
1 CAAGATTGAGAACCAACAACACATTCACTTCGATAGGATACAAGAAAATGATGCTTGGGTGTCCC
* ** *
451531 AAAAAAAGCTTCTCTTCCTACCATTTTTGATCTAATCAAAGTTTGCTCTCTTAAATAAGACAAAC
66 AAAAAAAGCTTCTCTTCCCACCATTTTTGATAGAATCAAAGTTTACTCTCTTAAATAAGACAAAC
* * *
451596 AATAATAGTCATACTACTCCCCATTCTTTTTCGGATTAGGCACTATAAATGTAGTCTTCTCATCA
131 AATAATAGTCATACTAATCCCCATTCTTTTTCGGATTAGGCACCATAAACGTAGTCTTCTCATCA
451661 GGGTAGTCTTCTCATCAAGGTAGA
196 GGGTAGTCTTCTCATCAAGGTAGA
* * * * **
451685 CAAGATTGAGAACTAAGAGCACATTCACTTC-ATTAGGATACATGAAAATGATGCTTGGGTGTTG
1 CAAGATTGAGAACCAACAACACATTCACTTCGA-TAGGATACAAGAAAATGATGCTTGGGTGTCC
* * * *
451749 CAAGAAAAGCTTTTTTTTTCCCACCGTTTTTGATAGAATCAAAGTTTACTCTCTTAAATAAGACA
65 CAAAAAAAGC--TTCTCTTCCCACCATTTTTGATAGAATCAAAGTTTACTCTCTTAAATAAGACA
*
451814 AAC-ATGAATAGTCATACTAATCCCCATTCTTTTTTGGATTAGGCACCATAAACGTAGTCTTCTC
128 AACAAT-AATAGTCATACTAATCCCCATTCTTTTTCGGATTAGGCACCATAAACGTAGTCTTCTC
451878 AT
192 AT
451880 TCTGTAGACG
Statistics
Matches: 168, Mismatches: 23, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
218 1 0.01
219 60 0.36
220 2 0.01
221 105 0.62
ACGTcount: A:0.32, C:0.21, G:0.15, T:0.32
Consensus pattern (219 bp):
CAAGATTGAGAACCAACAACACATTCACTTCGATAGGATACAAGAAAATGATGCTTGGGTGTCCC
AAAAAAAGCTTCTCTTCCCACCATTTTTGATAGAATCAAAGTTTACTCTCTTAAATAAGACAAAC
AATAATAGTCATACTAATCCCCATTCTTTTTCGGATTAGGCACCATAAACGTAGTCTTCTCATCA
GGGTAGTCTTCTCATCAAGGTAGA
Found at i:452055 original size:697 final size:696
Alignment explanation
Indices: 450990--452355 Score: 2051
Period size: 697 Copynumber: 2.0 Consensus size: 696
450980 TATTCTTTTT
* * * *
450990 AAGATTGGGAACCAAGAGCACATTCACTTCATTAGGATACAAGACATTAATGCTTTGGTGTTGCA
1 AAGATTGAGAACCAAGAGCACATTCACTTCATTAGGATACAAGAAAATAATGCTTGGGTGTTGCA
* * *
451055 AGAAATGCTTTTCTTTCCTCCGTTTTTGATAGAATCAAAGTTTACTCTCTCAAATAAGGCAAACA
66 AGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTACTCTCTCAAATAAGACAAACA
* * *
451120 TGAATAGTCATAGTCATCCCCATTCTTTTTTGAATTAGGCACCATAAACGTAGTCTTCTCATTAG
131 TGAATAGTCATACTAATCCCCATTCTTTTTTGAATTAGGCACCATAAACGTAGTCTTCTCATTAC
* * * *
451185 GGTAGATGATATTGATGCTTTGGTTTCACAAGAAAGGCTTTCTTCCTACGAATTTTTGTAAAGTC
196 GGTAGACGATATTGATGCTTTGGTTGCACAAGAAAGGCTTTCTTCCTACCAATTTTCGTAAAGTC
* * *
451250 TAAGTTCGTGCGTCAAAAGAGACAAACATGGATTTTGGTAATGATCATCATTCATTTTCTGATAA
261 TAAGTTCGTGCCTCAAAAGAGACAAACATGGATTCTGGTAATGATCATCATTCATTTTCTCATAA
* *
451315 GTCACTATAAACACATTCTCCTCATTCGGATAAATGATATTGATGATTTTCTTTTGCATGGAAAT
326 GGCACTATAAACACATTATCCTCATTCGGATAAATGATATTGATGATTTTCTTTTGCATGGAAAT
* *
451380 CTTTTCTTTGTCCTATTTTCCTAAAAATCAAAATTCATCCCTTAAGTATGAGAAGCATCAATTCT
391 CTTTTCTTTGTCCTATTTTCCTAAAAATCAAAATTCATCCCTTAAGTATGACAAGCATCAATTCA
* *
451445 CGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAACAACACATTCCCTTCGATAGGATACAAG
456 AGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAACAACACATTCCCTTCAATAGGATACAAG
* * **
451510 ACATTGATGCTTTGGTGTCCCAAAAAAAGCTTCTC-TTCCTACCATTTTTGATCTAATCAAAGTT
521 ACATTAATGCTTAGGTGTCCCAAAAAAAGCTTCTCTTTCC-ACCATTTTTGATAGAATCAAAGTT
** * *
451574 TGCTCTCTTAAATAAGACAAACAAT-AATAGTCATACTACTCCCCATTCTTTTTCGGATTAGGCA
585 CACTCTCTGAAATAAGACAAA-AATCAATAGTCATACTAATCCCCATTCTTTTTCGGATTAGGCA
* * *
451638 CTATAAATGTAGTCTTCTCATCAGGGTAGTCTTCTCATCAAGGTAGAC
649 CCATAAAGGTAGTATTCTCATCAGGGTAGTCTTCTCATCAAGGTAGAC
* * *
451686 AAGATTGAGAACTAAGAGCACATTCACTTCATTAGGATACATGAAAATGATGCTTGGGTGTTGCA
1 AAGATTGAGAACCAAGAGCACATTCACTTCATTAGGATACAAGAAAATAATGCTTGGGTGTTGCA
* *
451751 AGAAAAGCTTTTTTTTTCCCACCGTTTTTGATAGAATCAAAGTTTACTCTCTTAAATAAGACAAA
66 AGAAAAGC-TTTTCTTT-CCACCGTTTTTGATAGAATCAAAGTTTACTCTCTCAAATAAGACAAA
*
451816 CATGAATAGTCATACTAATCCCCATTCTTTTTTGGATTAGGCACCATAAACGTAGTCTTCTCATT
129 CATGAATAGTCATACTAATCCCCATTCTTTTTTGAATTAGGCACCATAAACGTAGTCTTCTCATT
* *
451881 -CTGTAGACGATATTGATGCTTTGGGGTTGC-CAA-AAAGGCTTTCTT-TTCACCAATTTTCGTA
194 ACGGTAGACGATATTGATGCTTT--GGTTGCACAAGAAAGGCTTTCTTCCT-ACCAATTTTCGTA
* * * *
451942 AAGTCTATGTTTGTGCCTCAAATGAGACAAACATGGATTCTGGTAATGATCATCATTCATTTTGT
256 AAGTCTAAGTTCGTGCCTCAAAAGAGACAAACATGGATTCTGGTAATGATCATCATTCATTTTCT
* *
452007 CATAAGGCACTATAAACACGTTATCCTTATTCGGATAAATGATATTGATGATTTTCTTTTGCATG
321 CATAAGGCACTATAAACACATTATCCTCATTCGGATAAATGATATTGATGATTTTCTTTTGCATG
* * * *
452072 GAAATCTTTTCTTTGTCCTATTTTCCTTAAATTCAAAATTCATCCCTTAAGTATGACAAGTATCG
386 GAAATCTTTTCTTTGTCCTATTTTCCTAAAAATCAAAATTCATCCCTTAAGTATGACAAGCATCA
* * * * **
452137 ATTCAAGTAATAGTTTCCATTCTTTTCAAGATTGGGAACTAAGAACACATTTTCTTCAATAGGAT
451 ATTCAAGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAACAACACATTCCCTTCAATAGGAT
* * ** * *
452202 ACATGTCATTAATGCTTAGGTGTTGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAA
516 ACAAGACATTAATGCTTAGGTGTCCCAAAAAAAGCTTCTCTTTCCACCATTTTTGATAGAATCAA
452267 AGTTCACTCTCTGAAATAAGACAAAAATCAATAGTCATACTAATCCCCATTCTTTTTCGGATTAG
581 AGTTCACTCTCTGAAATAAGACAAAAATCAATAGTCATACTAATCCCCATTCTTTTTCGGATTAG
452332 GCACCATAAAGGTAGTATTCTCAT
646 GCACCATAAAGGTAGTATTCTCAT
452356 TACGGTAGAC
Statistics
Matches: 599, Mismatches: 64, Indels: 13
0.89 0.09 0.02
Matches are distributed among these distances:
696 69 0.12
697 412 0.69
698 113 0.19
699 5 0.01
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.35
Consensus pattern (696 bp):
AAGATTGAGAACCAAGAGCACATTCACTTCATTAGGATACAAGAAAATAATGCTTGGGTGTTGCA
AGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTACTCTCTCAAATAAGACAAACA
TGAATAGTCATACTAATCCCCATTCTTTTTTGAATTAGGCACCATAAACGTAGTCTTCTCATTAC
GGTAGACGATATTGATGCTTTGGTTGCACAAGAAAGGCTTTCTTCCTACCAATTTTCGTAAAGTC
TAAGTTCGTGCCTCAAAAGAGACAAACATGGATTCTGGTAATGATCATCATTCATTTTCTCATAA
GGCACTATAAACACATTATCCTCATTCGGATAAATGATATTGATGATTTTCTTTTGCATGGAAAT
CTTTTCTTTGTCCTATTTTCCTAAAAATCAAAATTCATCCCTTAAGTATGACAAGCATCAATTCA
AGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAACAACACATTCCCTTCAATAGGATACAAG
ACATTAATGCTTAGGTGTCCCAAAAAAAGCTTCTCTTTCCACCATTTTTGATAGAATCAAAGTTC
ACTCTCTGAAATAAGACAAAAATCAATAGTCATACTAATCCCCATTCTTTTTCGGATTAGGCACC
ATAAAGGTAGTATTCTCATCAGGGTAGTCTTCTCATCAAGGTAGAC
Found at i:453011 original size:478 final size:475
Alignment explanation
Indices: 451686--453460 Score: 2348
Period size: 478 Copynumber: 3.7 Consensus size: 475
451676 CAAGGTAGAC
* * * * * * * *
451686 AAGATTGAGAACTAAGAGCACATTCACTTCATTAGGATACATGAAAATGATGCTTGGGTGTTGCA
1 AAGATTGGGAACCAAGAACACATTCACTTCAATAGGATACATGACATTAATGCTTTGGTGTTGCA
*
451751 AGAAAAGCTTTTTTTTTCCCACCGTTTTTGATAGAATCAAAGTTTACTCTCTTAAATAAGACAAA
66 AGAAAAGC-TTTTCTTT-CCACCGTTTTTGATAGAATCAAAGTTTACTCTCTTAAATAAGACAAA
*
451816 CATGAATAGTCATACTAATCCCCATTCTTTTTTGGATTAGGCACCATAAACGTAGTCTTCTCATT
129 CATGAATAGTCATACTAATCCCCATTCTTTTTCGGATTAGGCACCATAAACGTAGTCTTCTCATT
* * * * *
451881 -CTGTAGACGATATTGATGCTTTGGGGTT-GCCAAAAAGGCTTTCTTTTCACCAATTTTCGTAAA
194 ACGGTAGACAATATTGATGCTTT-GGTTTCG-CAAAAAGGCTTTCTTCTCACCAATTTTTGTAAA
* * * *
451944 GTCTATGTTTGTGCCTCAAATGAGACAAACATGGATTCTGGTAATGATCATCATTCATTTTGTCA
257 GTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTGGTAATGATCTTCATTCATTTTGTGA
* * *
452009 TAAGGCACTATAAACACGTTATCCTTATTCGGATAAATGATATTGATGATTTTCTTTTGCATGGA
322 TAAGGCACTACAAACACATTCT-CTTATTCGGATAAATGATATTGATGATTTTCTTTTGCATGGA
* *
452074 AATCTTTTCTTTGTCCTATTTTCCTTAAATTCAAAATTCATCCCTTAAGTATGACAAGTATCGAT
386 AATCTTTTCTTTGTCCTATTTTCCTAAAATTCAAAATTCATCCCTTAAGTATGACAAGAATCGAT
* * *
452139 TC-AAGTAATAGTTTCCATT-CTTTT
451 TCTCA-TAATAGTCTCTATTCCTTTT
* ** * *
452163 CAAGATTGGGAACTAAGAACACATTTTCTTCAATAGGATACATGTCATTAATGCTTAGGTGTTGC
1 -AAGATTGGGAACCAAGAACACATTCACTTCAATAGGATACATGACATTAATGCTTTGGTGTTGC
* * * *
452228 AAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTCACTCTCTGAAATAAGACAAAA
65 AAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTACTCTCTTAAATAAGACAAAC
* * *
452293 ATCAATAGTCATACTAATCCCCATTCTTTTTCGGATTAGGCACCATAAAGGTAGTATTCTCATTA
130 ATGAATAGTCATACTAATCCCCATTCTTTTTCGGATTAGGCACCATAAACGTAGTCTTCTCATTA
** * * *
452358 CGGTAGACAATATTGATGCTTTGGCGTCGCTAAAAAAGCTTTCTTCCCACCAATTTTTCTAAAGT
195 CGGTAGACAATATTGATGCTTTGGTTTCGC-AAAAAGGCTTTCTTCTCACCAATTTTTGTAAAGT
* * *
452423 CTATGTTCGTGCCACAAATGAGACAAACATGGATTCTGGTAATGATCTTCATTCATTTTGTGCGT
259 CTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTGGTAATGATCTTCATTCATTTTGTG-AT
* * ** * *
452488 -AGGCACTACAAACACATTCCCCTTAATAAGATCAATGATATTGATGATTTTCTTTTGCATCGAA
323 AAGGCACTACAAACACATT-CTCTTATTCGGATAAATGATATTGATGATTTTCTTTTGCATGGAA
* * * * * *
452552 ATCTTTTCTTTGCCCTATTTTCCTAAAATTCAAAATTCAACTCTTAAATATGGCAAGCATCGATT
387 ATCTTTTCTTTGTCCTATTTTCCTAAAATTCAAAATTCATCCCTTAAGTATGACAAGAATCGATT
452617 CTCATAATAGTCTCTATTCCTTTT
452 CTCATAATAGTCTCTATTCCTTTT
* * *
452641 AAGATTGGGAACCAATAGCACATTCACTTCATTAGGATACATGACATTAATGCTTTGGTGTTGCA
1 AAGATTGGGAACCAAGAACACATTCACTTCAATAGGATACATGACATTAATGCTTTGGTGTTGCA
* * * *
452706 A-AAAATGCTTTTCATTCCTCCGTTTTTGATAGAATCAAAGTTTACTCTCTTAAATAGGGCAAAC
66 AGAAAA-GCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTACTCTCTTAAATAAGACAAAC
* * *
452770 AATGAATAGTCATAGTAATCCCCATTCTTTTTTGAATTAGGCACCATAAACGTAGTCTTCTCATT
130 -ATGAATAGTCATACTAATCCCCATTCTTTTTCGGATTAGGCACCATAAACGTAGTCTTCTCATT
* ** * **
452835 AGGGTAGATGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTATTC-CTATGAATTTTTGTAAA
194 ACGGTAGACAATATTGATGCTTTGGTTTCGCAA-AAAGGCTTTCTTCTC-ACCAATTTTTGTAAA
* * * *
452899 GTCTAAGTTCGTGCGTCAAAAGAGACAAACATGGATTCTGGTAATGATCTTCGTTCATTTTCTGA
257 GTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTGGTAATGATCTTCATTCATTTTGTGA
*
452964 TAAGGCACTATAAACACATTCTCTTCATTCGGATAAATGATATTGATGATTTTCTTTTGCATGGA
322 TAAGGCACTACAAACACATTCTCTT-ATTCGGATAAATGATATTGATGATTTTCTTTTGCATGGA
* *
453029 AATCTTTTCTTTGTCCTATTTTCCTTAAAA-TCAAAATTCATCCCTTATGTATGACAAGAATCAA
386 AATCTTTTCTTTGTCCTATTTTCC-TAAAATTCAAAATTCATCCCTTAAGTATGACAAGAATCGA
*
453093 TTCTCATAATAGTCTCTATTCCTTTC
450 TTCTCATAATAGTCTCTATTCCTTTT
* * *
453119 AAGATTGGGAACCAAGAACACATTC-CTTTCAATAGAATACATGACATTGATGCTTTGCTGTTGC
1 AAGATTGGGAACCAAGAACACATTCAC-TTCAATAGGATACATGACATTAATGCTTTGGTGTTGC
* * * *
453183 AAAAAAAGCTTTTC-TTCCTACCGTTTTTGGTAGAATCAAAGTTTGCTCTTTTAAATAAGACAAA
65 AAGAAAAGCTTTTCTTTCC-ACCGTTTTTGATAGAATCAAAGTTTACTCTCTTAAATAAGACAAA
* * **
453247 CATGAATAGTCATATTGATCCATATTCTTTTTCGGATTAGGCACCATAAACGTAGTCTTCTC-TT
129 CATGAATAGTCATACTAATCCCCATTCTTTTTCGGATTAGGCACCATAAACGTAGTCTTCTCATT
** * **
453311 TGGGTAGACAATATTGATGCTTTGGTTTCACAAAAAAGGCTTTCTTCTCACCAATTTTTGTTTAG
194 ACGGTAGACAATATTGATGCTTTGGTTTCGC-AAAAAGGCTTTCTTCTCACCAATTTTTGTAAAG
* * * * * *
453376 TCTAAATTCGTGCCTCAAATGAGACAAACATGGTTTCTAGTAATGATTTTCCTTCATTTTGTGCT
258 TCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTGGTAATGATCTTCATTCATTTTGTGAT
*
453441 TAGGCACTACAAACACATTC
323 AAGGCACTACAAACACATTC
453461 CCCTCTGTAG
Statistics
Matches: 1133, Mismatches: 145, Indels: 40
0.86 0.11 0.03
Matches are distributed among these distances:
476 239 0.21
477 419 0.37
478 466 0.41
479 9 0.01
ACGTcount: A:0.30, C:0.18, G:0.15, T:0.36
Consensus pattern (475 bp):
AAGATTGGGAACCAAGAACACATTCACTTCAATAGGATACATGACATTAATGCTTTGGTGTTGCA
AGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTACTCTCTTAAATAAGACAAACA
TGAATAGTCATACTAATCCCCATTCTTTTTCGGATTAGGCACCATAAACGTAGTCTTCTCATTAC
GGTAGACAATATTGATGCTTTGGTTTCGCAAAAAGGCTTTCTTCTCACCAATTTTTGTAAAGTCT
AAGTTCGTGCCTCAAATGAGACAAACATGGATTCTGGTAATGATCTTCATTCATTTTGTGATAAG
GCACTACAAACACATTCTCTTATTCGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCT
TTTCTTTGTCCTATTTTCCTAAAATTCAAAATTCATCCCTTAAGTATGACAAGAATCGATTCTCA
TAATAGTCTCTATTCCTTTT
Found at i:456087 original size:27 final size:28
Alignment explanation
Indices: 456053--456128 Score: 111
Period size: 27 Copynumber: 2.8 Consensus size: 28
456043 AATTTTCACA
456053 ATCGGGGATACTCCAACCCCGTTA-ATC
1 ATCGGGGATACTCCAACCCCGTTATATC
*
456080 ATCGGGGATACTCCAACCCCGTTATTTC
1 ATCGGGGATACTCCAACCCCGTTATATC
*
456108 -TGAGGGGATACTCCAACCCCG
1 AT-CGGGGATACTCCAACCCCG
456129 GTTTTATTGG
Statistics
Matches: 45, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
27 25 0.56
28 20 0.44
ACGTcount: A:0.24, C:0.33, G:0.21, T:0.22
Consensus pattern (28 bp):
ATCGGGGATACTCCAACCCCGTTATATC
Found at i:456239 original size:53 final size:50
Alignment explanation
Indices: 456111--456282 Score: 184
Period size: 52 Copynumber: 3.3 Consensus size: 50
456101 TTATTTCTGA
* *
456111 GGGGATACTCCAACCCCGGTTTTATTGGT-AAAACACTAATTTTTCCACAATC
1 GGGGATACTCCAACCCCGGTTTTATT-TTCAAAACACCAATTTTT-C-CAATC
456163 GGGGATACTCCAACCCCGGTTTTATTTTCAAAACACCAATTTTTCCTTTAATC
1 GGGGATACTCCAACCCCGGTTTTATTTTCAAAACACCAATTTTTCC---AATC
** * * * *
456216 GGGGATACTCCAACTTCGATTTTATTTCCAAAAATACCAATTCTTCACAATC
1 GGGGATACTCCAACCCCGGTTTTATTTTC-AAAACACCAATTTTTC-CAATC
*
456268 GAGGATACTCCAACC
1 GGGGATACTCCAACC
456283 TCGTTATCTC
Statistics
Matches: 104, Mismatches: 10, Indels: 12
0.83 0.08 0.10
Matches are distributed among these distances:
50 1 0.01
51 2 0.02
52 57 0.55
53 29 0.28
54 14 0.13
55 1 0.01
ACGTcount: A:0.30, C:0.26, G:0.13, T:0.31
Consensus pattern (50 bp):
GGGGATACTCCAACCCCGGTTTTATTTTCAAAACACCAATTTTTCCAATC
Found at i:456301 original size:28 final size:28
Alignment explanation
Indices: 456265--456341 Score: 93
Period size: 28 Copynumber: 2.8 Consensus size: 28
456255 ATTCTTCACA
* *
456265 ATCGAGGATACTCCAACCTCGTTA-TCTC
1 ATCGGGGATACTCCAACCCCGTTACT-TC
456293 ATCGGGGATACTCCAACCCCGTTACTTC
1 ATCGGGGATACTCCAACCCCGTTACTTC
***
456321 CGAGGGGATACTCCAACCCCG
1 ATCGGGGATACTCCAACCCCG
456342 GCTTTATTCC
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
28 42 0.98
29 1 0.02
ACGTcount: A:0.23, C:0.35, G:0.19, T:0.22
Consensus pattern (28 bp):
ATCGGGGATACTCCAACCCCGTTACTTC
Found at i:459280 original size:474 final size:475
Alignment explanation
Indices: 458115--460257 Score: 2705
Period size: 473 Copynumber: 4.5 Consensus size: 475
458105 CGCAAAAAAT
* * * *
458115 AAAAGC-TTTCTTTCTACCGTTTTTGATGGAATCAAAGTTTGCTCTCTTAAATAAGACAGACATG
1 AAAAGCTTTTCTTTCTACTGTTTTTGATAGAATCAAAGTTT-ATCTCTTAAATAAGACAAACATG
* *
458179 AATAGTCATACTAAT-CTCATTC-TTTTTGGATTAGGCACCAT-AACGTAGTCTTCTCATTAGAG
65 AATAGTCATACTAATCCCCATTCTTTTTTGGATTAGGCACCATAAACGTAGTCTTCTCATTAGGG
* * * * *
458241 TAGACGATACTGAAGCTTTAGTTTTGCAAGAAAGGATTTCTTCCCACCAATTTTTGTAAAGTCTA
130 TAGACGATATTGATGCTTT-GGTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTA
** * * *
458306 AGTTTGTGCCTCAAATGAGATAAACATGGAATCTAGAAATGATCTTCATTCATTTTGTGCTTAGG
194 AGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGCTTAGG
** * * *
458371 CGTTACAAACACATTCCCCTAATTCGGATAAATAATATTGATGATTTTC-TTTGTATCGAAATCT
259 CACTACAAACACATTCCCCTAATTAGGATAAATGATATTGATGATTTTCTTTTGCATCGAAATCT
* * * *
458435 TTTCTTTGCCCTATCTTCCTAAAAATTAAAATTCAACTCTTAAATATGACAAGCGTTGATTCTAG
324 TTTCTTTGCCCTATTTTCCTAAAAATTAAAATTCAACTCTTAAATATGACAAGCATCGATTCTCG
* * *
458500 TAATAGTCTTCATTGTTTTCAAGATTGGGAACCAAGAGCACATTCACTTCATTAGGATACATGAC
389 TAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAGAGCACATTCACTTCATTAGGATACATGAC
*
458565 ATTGATGCTTTGGTGTTGCAAG
454 ATTGATGCTTTGGTGATGCAAG
* * * *
458587 AAAAGCTTTTTTTTTCCACAGTTTTTGATAGAATCAAAGTTTACCTTCTTAAATAAGACAAACAT
1 AAAAGC-TTTTCTTTCTACTGTTTTTGATAGAATCAAAGTTTATC-TCTTAAATAAGACAAACAT
* * * * *
458652 GAATAGTCATATTAATCCCCATTCTTTTTTGGAGTAGG-AGCCATAAGCATAGTCTTCTTATTAG
64 GAATAGTCATACTAATCCCCATTCTTTTTTGGATTAGGCA-CCATAAACGTAGTCTTCTCATTAG
* * * * * * **
458716 GGTGGATGACATTAATGCTTTGGTTTCGTAAGAAAGGCTTTCTTCCCACCAATATTTACAAAGTC
128 GGTAGACGATATTGATGCTTTGG-TTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTC
* * * * * * *
458781 TAAGGTCCTGCCTTAAATTAGACAAACAAGGATTCTAGTAATGATCTTCATTAATTTTGCGCTTA
192 TAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGCTTA
* *
458846 GGCACTACAAACACATTCCCCTAGTTAGGATAAATGATATTGATAATTTT-TTTTGCATCGAAAT
257 GGCACTACAAACACATTCCCCTAATTAGGATAAATGATATTGATGATTTTCTTTTGCATCGAAAT
*
458910 -TTTTCTTTGCCCTATTTTCCTAAAAA-TCAAATTCAACTCTTAAATATGACAAGCATCGATTCT
322 CTTTTCTTTGCCCTATTTTCCTAAAAATTAAAATTCAACTCTTAAATATGACAAGCATCGATTCT
* *
458973 CGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAGAGCAGATTCACTTCATTAGGATACACG
387 CGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAGAGCACATTCACTTCATTAGGATACATG
459038 ACATTGATGCTTTGGTGATGCAA-
452 ACATTGATGCTTTGGTGATGCAAG
*
459061 AACAAGCTTTTCTTTCTACTGTTTTTGATGGAATCAAAGTTTGATCTCTTAAATAAGACAAACAT
1 AA-AAGCTTTTCTTTCTACTGTTTTTGATAGAATCAAAGTTT-ATCTCTTAAATAAGACAAACAT
* * * * * *
459126 GAAAAATCATACTAATCCACATTATTTTTTGGATTGGGCACCATAAATGTAGTCTTCTCATTAGG
64 GAATAGTCATACTAATCCCCATTCTTTTTTGGATTAGGCACCATAAACGTAGTCTTCTCATTAGG
* * *
459191 GTAGACGATATTGATGATTTGGTTCGTAAGAAAGGCTTTTCTTCCTACCAATTTTTGTAAAGTCT
129 GTAGACGATATTGATGCTTTGGTTCGCAAGAAAGGC-TTTCTTCCCACCAATTTTTGTAAAGTCT
* * * * *
459256 AAGTTCGTGCCTCAAACGAGACAAACATGGATTCTGGTAATGATCTTCATTCA-TTTGTGATAAG
193 AAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGCTTAG
* * * *
459320 GCACAACAAACACATTCTCCTAATTCA-GATAAAAGATATTGATGATTTTCTTTTGCATGGAAAT
258 GCACTACAAACACATTCCCCTAATT-AGGATAAATGATATTGATGATTTTCTTTTGCATCGAAAT
* * * * * * *** * *
459384 CTTCTCTTTGTCCTATTTT-CTTAAAATCAAAATTCATCCCTTGCGTATGGCAAGCATCAATTCT
322 CTTTTCTTTGCCCTATTTTCCTAAAAATTAAAATTCAACTCTTAAATATGACAAGCATCGATTCT
* * * * * *
459448 CATAGCAGTCTCCATTCTTTTC-A-ATTGGGAACCAAGAACACATTCCCTTCAATAGGATACAAG
387 CGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAGAGCACATTCACTTCATTAGGATACATG
* * *
459511 ACATTGATTCTTTGGTG-TCACAAA
452 ACATTGATGCTTTGGTGAT-GCAAG
* ** * * *
459535 AAAAGCTTTTCTTTCTATTG-TTTTGATCTAATAAAAGTTTACTCTCTTAAATAAGAGACACATG
1 AAAAGCTTTTCTTTCTACTGTTTTTGATAGAATCAAAGTTTA-TCTCTTAAATAAGACAAACATG
* * *
459599 AAAAGTCATACTAATCCCCATTCTTTTTCGGATTAAGCACCATAAACGTAGTCTTCTCATTAGGG
65 AATAGTCATACTAATCCCCATTCTTTTTTGGATTAGGCACCATAAACGTAGTCTTCTCATTAGGG
* * *
459664 TAGACAATATTGATGCTTTGGTTACGCAAGAAAGACTTTTTTCCCACCAA-TTTTGTAAAGTCTA
130 TAGACGATATTGATGCTTTGGTT-CGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTA
* *
459728 AGTTTATGCCTCAAATGAGACAAACATGAATTCTAGTAATGATCTTCATTCATTTTGTGCTTAGG
194 AGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGCTTAGG
* ** * *
459793 CACTACAAAAACATTCCCCTCCTTAGCATAAATGATATTGATGATTTTCTTTTGCATTGAAATC-
259 CACTACAAACACATTCCCCTAATTAGGATAAATGATATTGATGATTTTCTTTTGCATCGAAATCT
* * *
459857 TTTCTTGGCCCTATTTTCCTAAAAATTAAAATTCAGCTCTTAAATATGACAAGCATCGATTCTTG
324 TTTCTTTGCCCTATTTTCCTAAAAATTAAAATTCAACTCTTAAATATGACAAGCATCGATTCTCG
* * * * *
459922 TTATAGTCTCTATTCTTTT-AAGATTGGGAGCCAAAAGCACATTCACTTCATTAGGATACATGAC
389 TAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAGAGCACATTCACTTCATTAGGATACATGAC
459986 ATTGATGCTTTGGT-ATTGCAAG
454 ATTGATGCTTTGGTGA-TGCAAG
*
460008 AAAAGCTTTT-TATTCCA-TCGTTTTTGATAGAATC-AAGTTTACTCTCTTAAATAAGACAAACA
1 AAAAGCTTTTCT-TTCTACT-GTTTTTGATAGAATCAAAGTTTA-TCTCTTAAATAAGACAAACA
* * ** * *
460070 TGAATAGTTATACTAATCCCTATTCTTTTTCAGATTAGGCACCATAAATGTAGTCTTCTCATTAA
63 TGAATAGTCATACTAATCCCCATTCTTTTTTGGATTAGGCACCATAAACGTAGTCTTCTCATTAG
* * * *
460135 GGTAGACGATATTGATGCTTTTGTTTGCAAGAAAGGCTTTCTTCCCTCCAATTTCTGTAAAGTCT
128 GGTAGACGATATTGATGCTTTGGTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCT
* * * * *
460200 AAATTCATGCCTCAAATGAGACAAACATGGATTATGGTTATAATCTTCATTCATTTTG
193 AAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTG
460258 CGATAAGGCA
Statistics
Matches: 1432, Mismatches: 207, Indels: 63
0.84 0.12 0.04
Matches are distributed among these distances:
471 77 0.05
472 275 0.19
473 383 0.27
474 287 0.20
475 193 0.13
476 42 0.03
477 175 0.12
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (475 bp):
AAAAGCTTTTCTTTCTACTGTTTTTGATAGAATCAAAGTTTATCTCTTAAATAAGACAAACATGA
ATAGTCATACTAATCCCCATTCTTTTTTGGATTAGGCACCATAAACGTAGTCTTCTCATTAGGGT
AGACGATATTGATGCTTTGGTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAG
TTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGCTTAGGCA
CTACAAACACATTCCCCTAATTAGGATAAATGATATTGATGATTTTCTTTTGCATCGAAATCTTT
TCTTTGCCCTATTTTCCTAAAAATTAAAATTCAACTCTTAAATATGACAAGCATCGATTCTCGTA
ACAGTCTCCATTCTTTTCAAGATTGGGAACCAAGAGCACATTCACTTCATTAGGATACATGACAT
TGATGCTTTGGTGATGCAAG
Done.