Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold30
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2650045
ACGTcount: A:0.30, C:0.17, G:0.18, T:0.30
Warning! 144233 characters in sequence are not A, C, G, or T
File 1 of 17
Found at i:2527 original size:1 final size:1
Alignment explanation
Indices: 2521--2555 Score: 52
Period size: 1 Copynumber: 35.0 Consensus size: 1
2511 CCTACTCTTC
* *
2521 AAAAAAAAAAAAAACAAAAAAAAAAAAAGAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
2556 CCCCTTTTCA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
1 30 1.00
ACGTcount: A:0.94, C:0.03, G:0.03, T:0.00
Consensus pattern (1 bp):
A
Found at i:2540 original size:15 final size:15
Alignment explanation
Indices: 2520--2548 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
2510 ACCTACTCTT
2520 CAAAAAAAAAAAAAA
1 CAAAAAAAAAAAAAA
2535 CAAAAAAAAAAAAA
1 CAAAAAAAAAAAAA
2549 GAAAAAACCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.93, C:0.07, G:0.00, T:0.00
Consensus pattern (15 bp):
CAAAAAAAAAAAAAA
Found at i:2553 original size:13 final size:14
Alignment explanation
Indices: 2522--2555 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
2512 CTACTCTTCA
2522 AAAAAAAAAAAAAC
1 AAAAAAAAAAAAAC
*
2536 AAAAAAAAAAAAAG
1 AAAAAAAAAAAAAC
2550 AAAAAA
1 AAAAAA
2556 CCCCTTTTCA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.94, C:0.03, G:0.03, T:0.00
Consensus pattern (14 bp):
AAAAAAAAAAAAAC
Found at i:3630 original size:62 final size:62
Alignment explanation
Indices: 3555--3681 Score: 245
Period size: 62 Copynumber: 2.0 Consensus size: 62
3545 GCATTTTTTC
3555 TTTAAAGCCCACAATTCCGTGGCACTTTTTTCATCTTTAAGTCCACAACTCCGTGGCACCCT
1 TTTAAAGCCCACAATTCCGTGGCACTTTTTTCATCTTTAAGTCCACAACTCCGTGGCACCCT
*
3617 TTTAAAGCCCACAATTCCGTGGCACTTTTTTCATCTTTAAGTCCACAACTCCGTGGCACCTT
1 TTTAAAGCCCACAATTCCGTGGCACTTTTTTCATCTTTAAGTCCACAACTCCGTGGCACCCT
3679 TTT
1 TTT
3682 CTGTTTAAAG
Statistics
Matches: 64, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
62 64 1.00
ACGTcount: A:0.22, C:0.31, G:0.13, T:0.35
Consensus pattern (62 bp):
TTTAAAGCCCACAATTCCGTGGCACTTTTTTCATCTTTAAGTCCACAACTCCGTGGCACCCT
Found at i:3792 original size:33 final size:33
Alignment explanation
Indices: 3493--4324 Score: 652
Period size: 34 Copynumber: 24.9 Consensus size: 33
3483 TCAAATACCT
* *
3493 TTTTAAAGTCCACAACTCAGTGGCA-T-TTTGTC
1 TTTTAAAGCCCACAACTCCGTGGCACTCTTT-TC
* * * * *
3525 --TCAAAGTCCACGACTCAGTGGCA-TTTTTTC
1 TTTTAAAGCCCACAACTCCGTGGCACTCTTTTC
* *
3555 -TTTAAAGCCCACAATTCCGTGGCACTTTTTTC
1 TTTTAAAGCCCACAACTCCGTGGCACTCTTTTC
*
3587 ATCTTT-AAGTCCACAACTCCGTGGCAC-C----C
1 -T-TTTAAAGCCCACAACTCCGTGGCACTCTTTTC
* *
3616 TTTTAAAGCCCACAATTCCGTGGCACTTTTTTC
1 TTTTAAAGCCCACAACTCCGTGGCACTCTTTTC
*
3649 ATCTTT-AAGTCCACAACTCCGTGGCAC-CTTTTTC
1 -T-TTTAAAGCCCACAACTCCGTGGCACTC-TTTTC
*
3683 TGTTTAAAGCCCACAACTTCGTGGCAC-C----C
1 T-TTTAAAGCCCACAACTCCGTGGCACTCTTTTC
* * *
3712 TTTTAAAGCCCACAATTCCATGGCACTTTTTTC
1 TTTTAAAGCCCACAACTCCGTGGCACTCTTTTC
*
3745 ATCTTT-AAGTCCACAACTCCGTGGCAC-CTTTTC
1 -T-TTTAAAGCCCACAACTCCGTGGCACTCTTTTC
3778 TGTTTAAAGCCCACAACTCCGTGGCACTCTTTTTTCCC
1 T-TTTAAAGCCCACAACTCCGTGGCACTC--TTTT--C
*
3816 TTTTCAAAGCCCACAACTCCGTGGCACTTTTTTC
1 TTTT-AAAGCCCACAACTCCGTGGCACTCTTTTC
3850 TTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCC
1 TTTTAAAGCCCACAACTCCGTGGCACTC-TTTT--C
*
3886 TTTT-AAGTCCACAACTCCGTGGCA-TCTTTCTCCC
1 TTTTAAAGCCCACAACTCCGTGGCACTCTTT-T--C
* * *
3920 TTCCTAAAGCCCACACAAGTCGGTGGCAAC-C--TTC
1 TT-TTAAAG-CC-CACAACTCCGTGGC-ACTCTTTTC
*
3954 -TTCAAAGCCCACAACTCCGTGGCACTCTTTTC
1 TTTTAAAGCCCACAACTCCGTGGCACTCTTTTC
* * *
3986 CTTTAAAGCCCACAATTACGTGGCACTCTTTTCC
1 TTTTAAAGCCCACAACTCCGTGGCACTCTTTT-C
* * *
4020 TTCT-AAGCCCACAATTTCGTGGCACTCTTTTC
1 TTTTAAAGCCCACAACTCCGTGGCACTCTTTTC
* *
4052 TTTTTAAAGCCCACAACTCTGTGGCACCCTTTTTCCC
1 -TTTTAAAGCCCACAACTCCGTGGCACTC-TTTT--C
* *
4089 TTTTCAAAGCCCACAACTCTGTGGCACACTTTTCC
1 TTTT-AAAGCCCACAACTCCGTGGCACTCTTTT-C
*
4124 TTCT-AAGCCCACAACTCCGTGGCACTCTTTTTCC
1 TTTTAAAGCCCACAACTCCGTGGCACTC-TTTT-C
* *
4158 TTCT-AAGCCCACAACTCTGTGGCACTCTTTTTCC
1 TTTTAAAGCCCACAACTCCGTGGCACTC-TTTT-C
* *
4192 TTCT-AAGCCCACAACTTCGTGGCACTCTTTTTCC
1 TTTTAAAGCCCACAACTCCGTGGCACTC-TTTT-C
*
4226 TTCT-AAGCCCACAACTCCGTGGCACTCTTTTTTCCC
1 TTTTAAAGCCCACAACTCCGTGGCACTC--TTTT--C
4262 TTTTAAAGCCCACAACTCCGTGGCACT-TTGTTC
1 TTTTAAAGCCCACAACTCCGTGGCACTCTT-TTC
* * *
4295 TTTTTAAGTCCACAACTTCGTGGCA-TCTTT
1 TTTTAAAGCCCACAACTCCGTGGCACTCTTT
4325 CACCCTTTCT
Statistics
Matches: 680, Mismatches: 63, Indels: 114
0.79 0.07 0.13
Matches are distributed among these distances:
27 3 0.00
28 42 0.06
29 5 0.01
30 37 0.05
31 23 0.03
32 21 0.03
33 161 0.24
34 223 0.33
35 45 0.07
36 30 0.04
37 51 0.08
38 37 0.05
39 2 0.00
ACGTcount: A:0.21, C:0.33, G:0.13, T:0.34
Consensus pattern (33 bp):
TTTTAAAGCCCACAACTCCGTGGCACTCTTTTC
Found at i:3920 original size:104 final size:102
Alignment explanation
Indices: 3525--4344 Score: 717
Period size: 104 Copynumber: 8.1 Consensus size: 102
3515 GCATTTTGTC
* * * *
3525 TCAAAGTCCACGACTCAGTGGCA-TTTTTTC-TTTAAAGCCCACAATTCCGTGGCACT-TTTTTC
1 TCAAAGCCCACAACTCCGTGGCACTTTTTTCTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTC
* *
3587 ATCTTTAAGTCCACAACTCCGTGGCA-------CCCTT
66 CT-TTTAAGCCCACAACTCCGTGGCACTCTTTTCCCTT
* * *
3618 TTAAAGCCCACAATTCCGTGGCACTTTTTTCATCTTT-AAGTCCACAACTCCGTGGCAC-CTTTT
1 TCAAAGCCCACAACTCCGTGGCACTTTTTTC-T-TTTAAAGCCCACAACTCCGTGGCACTCTTTT
*
3681 T-CTGTTTAAAGCCCACAACTTCGTGGCA-------CCCTT
64 TCCT-TTT-AAGCCCACAACTCCGTGGCACTCTTTTCCCTT
* * * *
3714 TTAAAGCCCACAATTCCATGGCACTTTTTTCATCTTT-AAGTCCACAACTCCGTGGCAC-C-TTT
1 TCAAAGCCCACAACTCCGTGGCACTTTTTTC-T-TTTAAAGCCCACAACTCCGTGGCACTCTTTT
3776 T-CTGTTTAAAGCCCACAACTCCGTGGCACTCTTTTTTCCCTTT
64 TCCT-TTT-AAGCCCACAACTCCGTGGCACTC--TTTTCCC-TT
3819 TCAAAGCCCACAACTCCGTGGCACTTTTTTCTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTC
1 TCAAAGCCCACAACTCCGTGGCACTTTTTTCTTTTAAAGCCCACAACTCCGTGGCACTCTTTTT-
*
3884 CCTTTTAAGTCCACAACTCCGTGGCA-TCTTTCTCCCTT
65 CCTTTTAAGCCCACAACTCCGTGGCACTCTTT-TCCCTT
* * * * *
3922 CCTAAAGCCCACACAAGTCGGTGGCAAC---CTTC-TTCAAAGCCCACAACTCCGTGGCACTC-T
1 TC-AAAG-CC-CACAACTCCGTGGC-ACTTTTTTCTTTTAAAGCCCACAACTCCGTGGCACTCTT
* * *
3982 TTTCCTTTAAAGCCCACAATTACGTGGCACTCTTTT-CC-T
62 TTTCCTTTTAAGCCCACAACTCCGTGGCACTCTTTTCCCTT
* * * * * *
4021 TCTAAGCCCACAATTTCGTGGCACTCTTTTCTTTTTAAAGCCCACAACTCTGTGGCACCCTTTTT
1 TCAAAGCCCACAACTCCGTGGCACTTTTTTC-TTTTAAAGCCCACAACTCCGTGGCACTCTTTTT
* *
4086 CCCTTTTCAAAGCCCACAACTCTGTGGCACACTTTT-CC-T
65 -CCTTTT--AAGCCCACAACTCCGTGGCACTCTTTTCCCTT
* * *
4125 TCTAAGCCCACAACTCCGTGGCACTCTTTTTCCTTCT-AAGCCCACAACTCTGTGGCACTCTTTT
1 TCAAAGCCCACAACTCCGTGGCACT-TTTTT-CTTTTAAAGCCCACAACTCCGTGGCACTCTTTT
* * *
4189 TCCTTCTAAGCCCACAACTTCGTGGCACTCTTTTTCC-T
64 TCCTTTTAAGCCCACAACTCCGTGGCACTCTTTTCCCTT
*
4227 TCTAAGCCCACAACTCCGTGGCACTCTTTTTTCCCTTTTAAAGCCCACAACTCCGTGGCACT-TT
1 TCAAAGCCCACAACTCCGTGGCA--CTTTTTT--CTTTTAAAGCCCACAACTCCGTGGCACTCTT
* * * * *
4291 GTTCTTTTTAAGTCCACAACTTCGTGGCA-TCTTTCACCCTT
62 TTTCCTTTTAAGCCCACAACTCCGTGGCACTCTTT-TCCCTT
4332 TCTAAAGCCCACA
1 TC-AAAGCCCACA
4345 CAAGTCGGTG
Statistics
Matches: 622, Mismatches: 59, Indels: 79
0.82 0.08 0.10
Matches are distributed among these distances:
93 18 0.03
94 7 0.01
95 36 0.06
96 116 0.19
97 5 0.01
98 6 0.01
99 2 0.00
100 26 0.04
101 51 0.08
102 40 0.06
103 50 0.08
104 147 0.24
105 66 0.11
106 45 0.07
107 5 0.01
108 2 0.00
ACGTcount: A:0.21, C:0.33, G:0.12, T:0.33
Consensus pattern (102 bp):
TCAAAGCCCACAACTCCGTGGCACTTTTTTCTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTC
CTTTTAAGCCCACAACTCCGTGGCACTCTTTTCCCTT
Found at i:4433 original size:49 final size:49
Alignment explanation
Indices: 4365--5737 Score: 1310
Period size: 49 Copynumber: 27.8 Consensus size: 49
4355 GCAACCCTTC
* * *
4365 TAAGCCCAATATAGTTGGCCTTGAATCAGCATATTGGCACCTTTATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* * * *
4414 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCACCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
*
4463 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* * * * * * *
4512 TAAGTCCAATGTAGCTGGCCTTGACTCAACACATTGGCACTTTCACCAT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* *
4561 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* * *
4610 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* *
4659 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* * * *
4708 TAAGTCCAATGTAGCTGGCCTTGACTCAACACATTGGCACCTTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* *
4757 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* * *
4806 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCA----C--CTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* *
4849 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* *
4898 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C--CTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
*
4941 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACATTTTCCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCAC--CTT-CATCTT
* * ** *
4993 TAAGTTCAATGTAGCTGGCCTTGAATCAGCACGTTGACATCCTTTTTCTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-CC----T-TCATCTT
* * * * * * *
5048 TAAGCCCAATATCGTTGGCCATGAATCAACATATTGGCATCTTTATCACTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCAT--CTT
* * * * * * ** ** *
5099 T---TCTC-ATCATCATTCTAAGTCCAAT-ATAGCTGGCCTTGAATCAGCATATTGGCACCTTTA
1 TAAGTC-CAAT-AT-A-GCT--GGCC-TTGA-ATC-AG-CAT--ATTGGCACCTT--CA---TC-
5159 TCTT
48 --TT
* * * * * * *
5163 TAAGTCCAATGTAGCTGGCCTTGACTCAACACATTGGCACTTTCACCAT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* *
5212 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* * *
5261 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* *
5310 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* * * *
5359 TAAGTCCAATGTAGCTGGCCTTGACTCAACACATTGGCACCTTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* *
5408 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* * *
5457 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCA----C--CTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* *
5500 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* *
5549 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C--CTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
*
5592 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACATTTTCCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCAC--CTT-CATCTT
* * ** *
5644 TAAGTTCAATGTAGCTGGCCTTGAATCAGCACGTTGACATCCTTTTTCTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-CC----T-TCATCTT
* * * * *
5699 TAAGCCCAATATCGTTGGCCATGAATCAACATATTGGCA
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
5738 TCTTTATCAC
Statistics
Matches: 1082, Mismatches: 173, Indels: 132
0.78 0.12 0.10
Matches are distributed among these distances:
43 156 0.14
45 4 0.00
47 2 0.00
48 3 0.00
49 710 0.66
50 3 0.00
51 5 0.00
52 74 0.07
53 6 0.01
54 5 0.00
55 74 0.07
56 4 0.00
57 7 0.01
58 8 0.01
59 1 0.00
60 1 0.00
61 2 0.00
62 4 0.00
63 1 0.00
64 5 0.00
65 1 0.00
66 2 0.00
67 4 0.00
ACGTcount: A:0.25, C:0.25, G:0.17, T:0.33
Consensus pattern (49 bp):
TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
Found at i:4874 original size:92 final size:92
Alignment explanation
Indices: 4754--5024 Score: 479
Period size: 92 Copynumber: 2.9 Consensus size: 92
4744 GCACCTTCAT
4754 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
*
4819 GCTGGCCTTGACTCAGCACATTGGCAC
66 GCTGGCCTTGAATCAGCACATTGGCAC
4846 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
4911 GCTGGCCTTGAATCAGCACATTGGCAC
66 GCTGGCCTTGAATCAGCACATTGGCAC
* * *
4938 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACATTTTCCATCTTTAAGTTCAAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGG--CATCTT-CATCTTTAAGTCCAAT
5003 GTAGCTGGCCTTGAATCAGCAC
63 GTAGCTGGCCTTGAATCAGCAC
5025 GTTGACATCC
Statistics
Matches: 172, Mismatches: 4, Indels: 3
0.96 0.02 0.02
Matches are distributed among these distances:
92 130 0.76
94 5 0.03
95 37 0.22
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.32
Consensus pattern (92 bp):
CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
GCTGGCCTTGAATCAGCACATTGGCAC
Found at i:5008 original size:52 final size:54
Alignment explanation
Indices: 4938--5969 Score: 687
Period size: 49 Copynumber: 19.8 Consensus size: 54
4928 ACATTGGCAC
4938 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-CATTTTC-CAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCATTTTCTCAT
* * ** * *
4990 CTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACGTTGACATCCTTTTTCTCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-CCATTTTCTCAT
* * * * *
5045 CTTTAAGCCCAATATCGTTGGCCATGAATCAACATATTGGCATCTTTATCACTTTTCTCATCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-C-----CA--TTT-TC-TCAT
5109 CATTCTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACC---TT-T-AT
1 C-TT-TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCATTTTCTCAT
* * * * *
5160 CTTTAAGTCCAATGTAGCTGGCCTTGACTCAACACATTGGCA-C---TT-TCAC
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCATTTTCTCAT
* * *
5209 CATTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGG---CA-TCT-TCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCATTTTCTCAT
* * *
5258 CTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACC----T-TCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCATTTTCTCAT
* *
5307 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGG---CA-TCT-TCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCATTTTCTCAT
* * * *
5356 CTTTAAGTCCAATGTAGCTGGCCTTGACTCAACACATTGGCACC----T-TCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCATTTTCTCAT
* *
5405 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGG---CA-TCT-TCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCATTTTCTCAT
* * *
5454 CTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGG---CA------C--
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCATTTTCTCAT
* *
5497 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGG---CA-TCT-TCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCATTTTCTCAT
* *
5546 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGG---CA------C--
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCATTTTCTCAT
5589 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-CATTTTC-CAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCATTTTCTCAT
* * ** * *
5641 CTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACGTTGACATCCTTTTTCTCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-CCATTTTCTCAT
* * * * *
5696 CTTTAAGCCCAATATCGTTGGCCATGAATCAACATATTGGCATCTTTATCACTTTTCTCATCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-C-----CA--TTT-TC-TCAT
* *
5760 CATTCTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGG---CA-TCT-TCAT
1 C-TT-TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCATTTTCTCAT
* * ** * *
5811 CTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACGTTGACATCCTTTTTCTCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-CCATTTTCTCAT
* * * * * *
5866 CTTTAGGCCCAATATCGTTGGCCATGAATCAACATATTGGCATCTTTATCACTTTT-TCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-C-----CA-TTTTCTCAT
*
5926 CTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATATTGGCACC
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACC
5970 TTCATCATCT
Statistics
Matches: 795, Mismatches: 115, Indels: 138
0.76 0.11 0.13
Matches are distributed among these distances:
43 76 0.10
45 4 0.01
46 2 0.00
47 2 0.00
48 4 0.01
49 343 0.43
50 5 0.01
51 8 0.01
52 77 0.10
53 2 0.00
54 17 0.02
55 112 0.14
57 2 0.00
59 1 0.00
60 44 0.06
61 4 0.01
62 6 0.01
63 4 0.01
64 10 0.01
65 5 0.01
66 67 0.08
ACGTcount: A:0.25, C:0.25, G:0.16, T:0.34
Consensus pattern (54 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCATTTTCTCAT
Found at i:5073 original size:55 final size:52
Alignment explanation
Indices: 4938--5075 Score: 159
Period size: 52 Copynumber: 2.6 Consensus size: 52
4928 ACATTGGCAC
* *
4938 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACATTTTCCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACACATTTTCCAT
* * * *
4990 CTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACGTTGACATCCTTTTTCTCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACA--CATTTTC-CAT
* * * *
5045 CTTTAAGCCCAATATCGTTGGCCATGAATCA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCA
5076 ACATATTGGC
Statistics
Matches: 71, Mismatches: 12, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
52 37 0.52
54 6 0.08
55 28 0.39
ACGTcount: A:0.25, C:0.24, G:0.16, T:0.35
Consensus pattern (52 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACACATTTTCCAT
Found at i:5139 original size:66 final size:62
Alignment explanation
Indices: 5034--5160 Score: 164
Period size: 66 Copynumber: 2.0 Consensus size: 62
5024 CGTTGACATC
* * *
5034 CTTTTTCTCATCTTTAAGCCCAATATCGTTGGCCATGAATCAACATATTGGCATCTTTATCA
1 CTTTTTCTCATCTTTAAGCCCAATATAGCTGGCCATGAATCAACATATTGGCACCTTTATCA
* * *
5096 CTTTTCTCATCATCATTCTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATC
1 CTTTT-TC-TCATC-TT-TAAGCCCAATATAGCTGGCCATGAATCAACATATTGGCACCTTTATC
5161 TTTAAGTCCA
Statistics
Matches: 55, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
62 5 0.09
63 2 0.04
64 5 0.09
65 2 0.04
66 41 0.75
ACGTcount: A:0.25, C:0.25, G:0.12, T:0.38
Consensus pattern (62 bp):
CTTTTTCTCATCTTTAAGCCCAATATAGCTGGCCATGAATCAACATATTGGCACCTTTATCA
Found at i:5525 original size:92 final size:92
Alignment explanation
Indices: 5405--5675 Score: 479
Period size: 92 Copynumber: 2.9 Consensus size: 92
5395 GCACCTTCAT
5405 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
*
5470 GCTGGCCTTGACTCAGCACATTGGCAC
66 GCTGGCCTTGAATCAGCACATTGGCAC
5497 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
5562 GCTGGCCTTGAATCAGCACATTGGCAC
66 GCTGGCCTTGAATCAGCACATTGGCAC
* * *
5589 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACATTTTCCATCTTTAAGTTCAAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGG--CATCTT-CATCTTTAAGTCCAAT
5654 GTAGCTGGCCTTGAATCAGCAC
63 GTAGCTGGCCTTGAATCAGCAC
5676 GTTGACATCC
Statistics
Matches: 172, Mismatches: 4, Indels: 3
0.96 0.02 0.02
Matches are distributed among these distances:
92 130 0.76
94 5 0.03
95 37 0.22
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.32
Consensus pattern (92 bp):
CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
GCTGGCCTTGAATCAGCACATTGGCAC
Found at i:5705 original size:651 final size:651
Alignment explanation
Indices: 4463--5837 Score: 2714
Period size: 651 Copynumber: 2.1 Consensus size: 651
4453 CCTTCACCTT
4463 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCT
4528 GGCCTTGACTCAACACATTGGCACTTTCACCATTAAGTCCAATATCGCTGGCCTTGAATCAGCAT
66 GGCCTTGACTCAACACATTGGCACTTTCACCATTAAGTCCAATATCGCTGGCCTTGAATCAGCAT
4593 ATTGGCATCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCT
131 ATTGGCATCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCT
4658 TTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTAGC
196 TTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTAGC
4723 TGGCCTTGACTCAACACATTGGCACCTTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCA
261 TGGCCTTGACTCAACACATTGGCACCTTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCA
4788 TATTGGCATCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTTAAG
326 TATTGGCATCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTTAAG
4853 TCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTAGCTGGCC
391 TCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTAGCTGGCC
4918 TTGAATCAGCACATTGGCACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACAT
456 TTGAATCAGCACATTGGCACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACAT
4983 TTTCCATCTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACGTTGACATCCTTTTTCTCATCTT
521 TTTCCATCTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACGTTGACATCCTTTTTCTCATCTT
5048 TAAGCCCAATATCGTTGGCCATGAATCAACATATTGGCATCTTTATCACTTTTCTCATCATCATT
586 TAAGCCCAATATCGTTGGCCATGAATCAACATATTGGCATCTTTATCACTTTTCTCATCATCATT
5113 C
651 C
5114 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCT
5179 GGCCTTGACTCAACACATTGGCACTTTCACCATTAAGTCCAATATCGCTGGCCTTGAATCAGCAT
66 GGCCTTGACTCAACACATTGGCACTTTCACCATTAAGTCCAATATCGCTGGCCTTGAATCAGCAT
5244 ATTGGCATCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCT
131 ATTGGCATCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCT
5309 TTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTAGC
196 TTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTAGC
5374 TGGCCTTGACTCAACACATTGGCACCTTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCA
261 TGGCCTTGACTCAACACATTGGCACCTTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCA
5439 TATTGGCATCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTTAAG
326 TATTGGCATCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTTAAG
5504 TCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTAGCTGGCC
391 TCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTAGCTGGCC
5569 TTGAATCAGCACATTGGCACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACAT
456 TTGAATCAGCACATTGGCACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACAT
5634 TTTCCATCTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACGTTGACATCCTTTTTCTCATCTT
521 TTTCCATCTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACGTTGACATCCTTTTTCTCATCTT
5699 TAAGCCCAATATCGTTGGCCATGAATCAACATATTGGCATCTTTATCACTTTTCTCATCATCATT
586 TAAGCCCAATATCGTTGGCCATGAATCAACATATTGGCATCTTTATCACTTTTCTCATCATCATT
5764 C
651 C
* * * *
5765 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTTCAATGTAGCT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCT
5830 GGCCTTGA
66 GGCCTTGA
5838 ATCAGCACGT
Statistics
Matches: 720, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
651 720 1.00
ACGTcount: A:0.25, C:0.25, G:0.17, T:0.33
Consensus pattern (651 bp):
TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCT
GGCCTTGACTCAACACATTGGCACTTTCACCATTAAGTCCAATATCGCTGGCCTTGAATCAGCAT
ATTGGCATCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCT
TTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTAGC
TGGCCTTGACTCAACACATTGGCACCTTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCA
TATTGGCATCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTTAAG
TCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTAGCTGGCC
TTGAATCAGCACATTGGCACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACAT
TTTCCATCTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACGTTGACATCCTTTTTCTCATCTT
TAAGCCCAATATCGTTGGCCATGAATCAACATATTGGCATCTTTATCACTTTTCTCATCATCATT
C
Found at i:5718 original size:55 final size:55
Alignment explanation
Indices: 5589--5964 Score: 302
Period size: 55 Copynumber: 6.7 Consensus size: 55
5579 ACATTGGCAC
* *
5589 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA--CATTTTC-CAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGACATCCTTTTTCTCAT
* * **
5641 CTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACGTTGACATCCTTTTTCTCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGACATCCTTTTTCTCAT
* * * * *
5696 CTTTAAGCCCAATATCGTTGGCCATGAATCAACATATTGGCATCTTTATCACTTTTCTCATCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATT-G-A-C---ATC-CTTTT-TC-TCAT
* *
5760 CATTCTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCAT-C----T-TCAT
1 C-TT-TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGACATCCTTTTTCTCAT
* * **
5811 CTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACGTTGACATCCTTTTTCTCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGACATCCTTTTTCTCAT
* * * * * * * * *
5866 CTTTAGGCCCAATATCGTTGGCCATGAATCAACATATTGGCATCTTTATCACTTTTTCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGACATC-CT-T---TTTCTCAT
*
5926 CTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATATTG
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTG
5965 GCACCTTCAT
Statistics
Matches: 254, Mismatches: 45, Indels: 42
0.74 0.13 0.12
Matches are distributed among these distances:
49 34 0.13
50 3 0.01
51 5 0.02
52 37 0.15
53 1 0.00
54 7 0.03
55 69 0.27
56 2 0.01
57 2 0.01
58 2 0.01
60 42 0.17
61 3 0.01
62 5 0.02
63 3 0.01
64 5 0.02
65 3 0.01
66 31 0.12
ACGTcount: A:0.25, C:0.24, G:0.15, T:0.37
Consensus pattern (55 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGACATCCTTTTTCTCAT
Found at i:5790 original size:66 final size:62
Alignment explanation
Indices: 5685--5807 Score: 174
Period size: 66 Copynumber: 1.9 Consensus size: 62
5675 CGTTGACATC
*
5685 CTTTTTCTCATCTTTAAGCCCAATATCGTTGGCCATGAATCAACATATTGGCATCTTTATCA
1 CTTTTTCTCATCTTTAAGCCCAATATCGCTGGCCATGAATCAACATATTGGCATCTTTATCA
* * *
5747 CTTTTCTCATCATCATTCTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTT
1 CTTTT-TC-TCATC-TT-TAAGCCCAATATCGCTGGCCATGAATCAACATATTGGCATCTT
5808 CATCTTTAAG
Statistics
Matches: 53, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
62 5 0.09
63 2 0.04
64 5 0.09
65 2 0.04
66 39 0.74
ACGTcount: A:0.24, C:0.25, G:0.12, T:0.38
Consensus pattern (62 bp):
CTTTTTCTCATCTTTAAGCCCAATATCGCTGGCCATGAATCAACATATTGGCATCTTTATCA
Found at i:5878 original size:170 final size:164
Alignment explanation
Indices: 5589--5975 Score: 648
Period size: 170 Copynumber: 2.3 Consensus size: 164
5579 ACATTGGCAC
*
5589 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACATTTTCCATCTTTAAGTTCAAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGG--CATCTT-CATCTTTAAGTTCAAT
5654 GTAGCTGGCCTTGAATCAGCACGTTGACATCCTTTTTCTCATCTTTAAGCCCAATATCGTTGGCC
63 GTAGCTGGCCTTGAATCAGCACGTTGACATCCTTTTTCTCATCTTTAAGCCCAATATCGTTGGCC
5719 ATGAATCAACATATTGGCATCTTTATCACTTTTCTCATCAT
128 ATGAATCAACATATTGGCATCTTTATCAC-TTT-T--TCAT
*
5760 CATTCTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTTCAATG
1 C-TT-TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTTCAATG
*
5825 TAGCTGGCCTTGAATCAGCACGTTGACATCCTTTTTCTCATCTTTAGGCCCAATATCGTTGGCCA
64 TAGCTGGCCTTGAATCAGCACGTTGACATCCTTTTTCTCATCTTTAAGCCCAATATCGTTGGCCA
5890 TGAATCAACATATTGGCATCTTTATCACTTTTTCAT
129 TGAATCAACATATTGGCATCTTTATCACTTTTTCAT
* *
5926 CTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATATTGGCACCTTCATC
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCTTCATC
5976 ATCTCTAAAA
Statistics
Matches: 209, Mismatches: 5, Indels: 11
0.93 0.02 0.05
Matches are distributed among these distances:
164 45 0.22
165 2 0.01
166 5 0.02
168 1 0.00
169 3 0.01
170 109 0.52
171 6 0.03
172 2 0.01
173 36 0.17
ACGTcount: A:0.25, C:0.24, G:0.15, T:0.36
Consensus pattern (164 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTTCAATGTA
GCTGGCCTTGAATCAGCACGTTGACATCCTTTTTCTCATCTTTAAGCCCAATATCGTTGGCCATG
AATCAACATATTGGCATCTTTATCACTTTTTCAT
Found at i:5928 original size:60 final size:61
Alignment explanation
Indices: 5857--5976 Score: 161
Period size: 60 Copynumber: 2.0 Consensus size: 61
5847 TTGACATCCT
* * * *
5857 TTTTCTCATCTTTAGGCCCAATATCGTTGGCCATGAATCAACATATTGGCATCTTTATCAC
1 TTTTCTCATCTTTAAGCCCAATATCGCTGGCCATGAATCAACATATTGGCACCTTCATCAC
* * * *
5918 TTTT-TCATCTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATATTGGCACCTTCATCA
1 TTTTCTCATCTTTAAGCCCAATATCGCTGGCCATGAATCAACATATTGGCACCTTCATCA
5977 TCTCTAAAAA
Statistics
Matches: 51, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
60 47 0.92
61 4 0.08
ACGTcount: A:0.24, C:0.24, G:0.13, T:0.38
Consensus pattern (61 bp):
TTTTCTCATCTTTAAGCCCAATATCGCTGGCCATGAATCAACATATTGGCACCTTCATCAC
Found at i:6801 original size:33 final size:33
Alignment explanation
Indices: 6764--6830 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
6754 TTCAACGATT
6764 TGTATCGATACATAAAATGTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
*** *
6797 TGTATCGATACATATTTTTTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
6830 T
1 T
6831 TTAAGCTACT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.34, C:0.12, G:0.13, T:0.40
Consensus pattern (33 bp):
TGTATCGATACATAAAATGTTGTATCGATACAA
Found at i:6802 original size:13 final size:13
Alignment explanation
Indices: 6784--6808 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
6774 CATAAAATGT
6784 TGTATCGATACAA
1 TGTATCGATACAA
6797 TGTATCGATACA
1 TGTATCGATACA
6809 TATTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:6896 original size:13 final size:13
Alignment explanation
Indices: 6878--6902 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
6868 ATTACTCACA
6878 TGTATCGATACAT
1 TGTATCGATACAT
6891 TGTATCGATACA
1 TGTATCGATACA
6903 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:7004 original size:52 final size:52
Alignment explanation
Indices: 6911--7038 Score: 224
Period size: 52 Copynumber: 2.5 Consensus size: 52
6901 CACTGATCTT
*
6911 TGTATCGATACATGCAGGC-AATTTGCCCAGATGTATCGATACA-TTTTAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATT-AAA
6962 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTAAA
7014 TGTATCGATACATGCAGGCAAATTT
1 TGTATCGATACATGCAGGCAAATTT
7039 TCATATTTCG
Statistics
Matches: 74, Mismatches: 1, Indels: 3
0.95 0.01 0.04
Matches are distributed among these distances:
51 19 0.26
52 52 0.70
53 3 0.04
ACGTcount: A:0.34, C:0.18, G:0.18, T:0.30
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTAAA
Found at i:10229 original size:18 final size:19
Alignment explanation
Indices: 10182--10229 Score: 53
Period size: 20 Copynumber: 2.5 Consensus size: 19
10172 TATGTTGCAC
*
10182 TTTTGATGATTTATTTGGT
1 TTTTGATGATTTATGTGGT
*
10201 TTATCTTATGATTT-TGTGGT
1 TT-T-TGATGATTTATGTGGT
10221 TTTTGATGA
1 TTTTGATGA
10230 CTGTGCTTAA
Statistics
Matches: 24, Mismatches: 3, Indels: 5
0.75 0.09 0.16
Matches are distributed among these distances:
18 5 0.21
19 3 0.12
20 8 0.33
21 8 0.33
ACGTcount: A:0.17, C:0.02, G:0.21, T:0.60
Consensus pattern (19 bp):
TTTTGATGATTTATGTGGT
Found at i:17096 original size:13 final size:13
Alignment explanation
Indices: 17078--17115 Score: 67
Period size: 13 Copynumber: 2.9 Consensus size: 13
17068 ACAAAACTTA
17078 TGTATCGATACAT
1 TGTATCGATACAT
17091 TGTATCGATACAT
1 TGTATCGATACAT
*
17104 TATATCGATACA
1 TGTATCGATACA
17116 AATTGTTGAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.34, C:0.16, G:0.13, T:0.37
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:18527 original size:20 final size:20
Alignment explanation
Indices: 18502--18625 Score: 90
Period size: 20 Copynumber: 5.7 Consensus size: 20
18492 AATTAACTAG
18502 ATGTATCGATACATTGAATA
1 ATGTATCGATACATTGAATA
18522 ATGTATCGATACATCTGGGTAAAAAAATAGA
1 ATGTATCGATACAT-T--G------AAT--A
*
18553 ATGTATCGATACATTGAACA
1 ATGTATCGATACATTGAATA
* *
18573 ATGTATTGATACATT-CATA
1 ATGTATCGATACATTGAATA
*
18592 CATATATCGATACATTGAA-A
1 -ATGTATCGATACATTGAATA
18612 ATGTATCGATACAT
1 ATGTATCGATACAT
18626 CTCGATAAAA
Statistics
Matches: 83, Mismatches: 8, Indels: 27
0.70 0.07 0.23
Matches are distributed among these distances:
19 15 0.18
20 43 0.52
21 2 0.02
22 2 0.02
23 1 0.01
28 1 0.01
29 3 0.04
30 1 0.01
31 15 0.18
ACGTcount: A:0.41, C:0.12, G:0.15, T:0.32
Consensus pattern (20 bp):
ATGTATCGATACATTGAATA
Found at i:18570 original size:51 final size:47
Alignment explanation
Indices: 18502--18655 Score: 153
Period size: 51 Copynumber: 3.3 Consensus size: 47
18492 AATTAACTAG
18502 ATGTATCGATACATTGAATAATGTATCGATACATCTGGGTAAAAAAATAGA
1 ATGTATCGATACATTGAA-AATGTATCGATACATCT--GT-AAAAAATAGA
* * *
18553 ATGTATCGATACATTGAACAATGTATTGATACA--T-T----CATA-C
1 ATGTATCGATACATTGAA-AATGTATCGATACATCTGTAAAAAATAGA
*
18593 ATATATCGATACATTGAAAATGTATCGATACATCTCGATAAAAAATAGA
1 ATGTATCGATACATTGAAAATGTATCGATACATCT-G-TAAAAAATAGA
18642 ATGTATCGATACAT
1 ATGTATCGATACAT
18656 GTACTATTTA
Statistics
Matches: 84, Mismatches: 9, Indels: 22
0.73 0.08 0.19
Matches are distributed among these distances:
39 13 0.15
40 17 0.20
41 4 0.05
44 1 0.01
46 1 0.01
48 3 0.04
49 14 0.17
51 31 0.37
ACGTcount: A:0.42, C:0.12, G:0.14, T:0.31
Consensus pattern (47 bp):
ATGTATCGATACATTGAAAATGTATCGATACATCTGTAAAAAATAGA
Found at i:19712 original size:28 final size:28
Alignment explanation
Indices: 19634--20214 Score: 624
Period size: 28 Copynumber: 20.5 Consensus size: 28
19624 CACTAACTTG
*
19634 TGTGGGCTTTGAAAAGAGTTGCCACCGACTT
1 TGTGGGCTTTGAAAAG-G-TGCCACTGAC-T
*
19665 GTGTGGGCTTTGAAAGGGTGCCACTGACT
1 -TGTGGGCTTTGAAAAGGTGCCACTGACT
** *
19694 TGTGGGCTTCAAAAAGGTGCCACTAACT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
** *
19722 TGTGGGCTTCAAAAAGGTGCCACTAACT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
**
19750 TGTGGGCTTTGAAGGGGTGCCACTGACT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
* *
19778 TATGGACTTT-AAAAGGATGCCACTGACT
1 TGTGGGCTTTGAAAAGG-TGCCACTGACT
* *
19806 TGTGGGCTTTG-GAAGGATGTCACTGACT
1 TGTGGGCTTTGAAAAGG-TGCCACTGACT
* *
19834 TGTGGGTTTTG-AAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAAGG-TGCCACTGACT
19862 TGTGGGCTTT-AAAAGGATGCCACTGACT
1 TGTGGGCTTTGAAAAGG-TGCCACTGACT
*
19890 TGTGGGC-TTGGAAAGGATGCCACTGACT
1 TGTGGGCTTTGAAAAGG-TGCCACTGACT
19918 TGTGGGCTTT-AAAAGGATGCCACTGACT
1 TGTGGGCTTTGAAAAGG-TGCCACTGACT
* * * *
19946 TGTGGACTTT-AGAGAGATACCACTGACT
1 TGTGGGCTTTGA-AAAGGTGCCACTGACT
* *
19974 TGTGGGCTTTGAAGAGTTGCCACTGACT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
* *
20002 TGTGGGCTGT-AAAAGGTGCCATTGACT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
* *
20029 TGTGGCCTTTGAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
*
20057 TGTGGGCTTTGAAAAGGATGCCACTCACT
1 TGTGGGCTTTGAAAAGG-TGCCACTGACT
* * *
20086 TATGGGCTTTTG-AAAGGACGCCACTAACT
1 TGTGGGC-TTTGAAAAGG-TGCCACTGACT
*
20115 TGTGGGCTTTGAAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAAGG-TGCCACTGACT
* * *
20144 TGTGGACTTTGAAATGATGCCACTGACT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
*
20172 TGTGGGCTTTG-AAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAAGG-TGCCACTGACT
20200 TGTGGGCTTTGAAAA
1 TGTGGGCTTTGAAAA
20215 AGGTCGTTTT
Statistics
Matches: 478, Mismatches: 58, Indels: 29
0.85 0.10 0.05
Matches are distributed among these distances:
27 31 0.06
28 341 0.71
29 77 0.16
30 13 0.03
31 1 0.00
32 15 0.03
ACGTcount: A:0.24, C:0.18, G:0.30, T:0.29
Consensus pattern (28 bp):
TGTGGGCTTTGAAAAGGTGCCACTGACT
Found at i:21516 original size:11 final size:11
Alignment explanation
Indices: 21488--21528 Score: 55
Period size: 11 Copynumber: 3.7 Consensus size: 11
21478 TAGACCCTTC
* *
21488 TTTTTTGTTTA
1 TTTTTTTTTTG
21499 TTTTTTTTTTG
1 TTTTTTTTTTG
21510 TTTTTTTTTTG
1 TTTTTTTTTTG
*
21521 GTTTTTTT
1 TTTTTTTT
21529 GGTACGAATG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 27 1.00
ACGTcount: A:0.02, C:0.00, G:0.10, T:0.88
Consensus pattern (11 bp):
TTTTTTTTTTG
Found at i:21528 original size:15 final size:15
Alignment explanation
Indices: 21488--21519 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
21478 TAGACCCTTC
21488 TTTTTTGTTTATTTT
1 TTTTTTGTTTATTTT
21503 TTTTTTGTTT-TTTT
1 TTTTTTGTTTATTTT
21517 TTT
1 TTT
21520 GGTTTTTTTG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 7 0.41
15 10 0.59
ACGTcount: A:0.03, C:0.00, G:0.06, T:0.91
Consensus pattern (15 bp):
TTTTTTGTTTATTTT
Found at i:24547 original size:51 final size:51
Alignment explanation
Indices: 24478--24592 Score: 160
Period size: 51 Copynumber: 2.3 Consensus size: 51
24468 AAATAGTGGG
* * * *
24478 GTTGGAGTATCCCTGATTGTGAGAAATTGGTGTTTTGGAAATAAAATCGAA
1 GTTGGAGTATCCCTGATTGTGAAAAACTGGTATTTTAGAAATAAAATCGAA
**
24529 GTTGGAGTAT-CCTCGATTGTGAAAAACTGGTATTTTAGAAATAAAATCGGG
1 GTTGGAGTATCCCT-GATTGTGAAAAACTGGTATTTTAGAAATAAAATCGAA
24580 GTTGGAGTATCCC
1 GTTGGAGTATCCC
24593 CTCAAAAATA
Statistics
Matches: 56, Mismatches: 6, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
50 3 0.05
51 51 0.91
52 2 0.04
ACGTcount: A:0.30, C:0.10, G:0.27, T:0.32
Consensus pattern (51 bp):
GTTGGAGTATCCCTGATTGTGAAAAACTGGTATTTTAGAAATAAAATCGAA
Found at i:24612 original size:79 final size:78
Alignment explanation
Indices: 24529--24861 Score: 407
Period size: 79 Copynumber: 4.2 Consensus size: 78
24519 TAAAATCGAA
* * *
24529 GTTGGAGTATCCTCGATTGTGAAAAACTGGTATTTTAGAAATAAAATCGGGGTTGGAGTATCCCC
1 GTTGGAGTATCCCCGATTGTGAAAAACT-ATATTTTAGAAATAAAATCGGGGTTAGAGTATCCCC
24594 TCAAAAATAACGGG
65 TCAAAAATAACGGG
* **
24608 GTTGGAGTATCCCCGATTGTGAAAAATCTATGTTTTAGAAATAAAGCCGGGGTTAGAGTATCCCC
1 GTTGGAGTATCCCCGATTGTGAAAAA-CTATATTTTAGAAATAAAATCGGGGTTAGAGTATCCCC
** *
24673 TCGGAAATAACAGG
65 TCAAAAATAACGGG
* * * * *
24687 GTTGGAGTATCCCCGATTGTGAGAAATTAATATTTTAGGAATAAAGTCGAGGTTAGAGTATCCCC
1 GTTGGAGTATCCCCGATTGTGAAAAACT-ATATTTTAGAAATAAAATCGGGGTTAGAGTATCCCC
* *
24752 TCGAAAATAATGGG
65 TCAAAAATAACGGG
* * * ** *
24766 GTTGGAGTATCCCCGATTGTGAGAAATCTATATTTTAGAAAT-AAAGCTAGCATTGGAGTATCCC
1 GTTGGAGTATCCCCGATTGTGA-AAAACTATATTTTAGAAATAAAATC-GGGGTTAGAGTATCCC
*
24830 TTCAAAAATAACGGG
64 CTCAAAAATAACGGG
24845 GTTGGAGTATCCCCGAT
1 GTTGGAGTATCCCCGAT
24862 GATTAATGGG
Statistics
Matches: 218, Mismatches: 32, Indels: 8
0.84 0.12 0.03
Matches are distributed among these distances:
78 4 0.02
79 209 0.96
80 5 0.02
ACGTcount: A:0.32, C:0.15, G:0.25, T:0.28
Consensus pattern (78 bp):
GTTGGAGTATCCCCGATTGTGAAAAACTATATTTTAGAAATAAAATCGGGGTTAGAGTATCCCCT
CAAAAATAACGGG
Found at i:24642 original size:130 final size:130
Alignment explanation
Indices: 24398--24652 Score: 340
Period size: 130 Copynumber: 2.0 Consensus size: 130
24388 AAAGAAATAG
* *
24398 AGTTGGAGTATCCCTGATTATAGAAAATCGATATTTTGAAAATAAAATCGGGGTTGGAGTATCCT
1 AGTTGGAGTATCCCTGATTATAGAAAAACGATATTTTGAAAATAAAATCGGGGTTGGAGTATCCC
** * * * *
24463 TGCAAAAATAGTGGGGTTGGAGTATCCCTGATTGTGAGAAATTGGTGTTTTGGAAATAAAATCGA
66 TGCAAAAATAACGGGGTTGGAGTATCCCCGATTGTGAAAAATTGATGTTTTAGAAATAAAATCGA
* *
24528 AGTTGGAGTAT-CCTCGATTGT-GAAAAACTGGTATTTT-AGAAATAAAATCGGGGTTGGAGTAT
1 AGTTGGAGTATCCCT-GATTATAGAAAAAC-GATATTTTGA-AAATAAAATCGGGGTTGGAGTAT
24590 CCCCT-CAAAAATAACGGGGTTGGAGTATCCCCGATTGTGAAAAATCT-ATGTTTTAGAAATAAA
63 -CCCTGCAAAAATAACGGGGTTGGAGTATCCCCGATTGTGAAAAAT-TGATGTTTTAGAAATAAA
24653 GCCGGGGTTA
Statistics
Matches: 110, Mismatches: 10, Indels: 10
0.85 0.08 0.08
Matches are distributed among these distances:
129 10 0.09
130 96 0.87
131 4 0.04
ACGTcount: A:0.34, C:0.11, G:0.25, T:0.31
Consensus pattern (130 bp):
AGTTGGAGTATCCCTGATTATAGAAAAACGATATTTTGAAAATAAAATCGGGGTTGGAGTATCCC
TGCAAAAATAACGGGGTTGGAGTATCCCCGATTGTGAAAAATTGATGTTTTAGAAATAAAATCGA
Found at i:24746 original size:158 final size:158
Alignment explanation
Indices: 24529--24861 Score: 468
Period size: 158 Copynumber: 2.1 Consensus size: 158
24519 TAAAATCGAA
* ** * *
24529 GTTGGAGTATCCTCGATTGTGAAAAACTGGTATTTTAGAAATAAAATCGGGGTTGGAGTATCCCC
1 GTTGGAGTATCCCCGATTGTGAAAAACTAATATTTTAGAAATAAAATCGAGGTTAGAGTATCCCC
* * *
24594 TCAAAAATAACGGGGTTGGAGTATCCCCGATTGTGAAAAATCTATGTTTTAGAAATAAAGCCGGG
66 TCAAAAATAACGGGGTTGGAGTATCCCCGATTGTGAAAAATCTATATTTTAGAAATAAAGCCAGC
* **
24659 GTTAGAGTATCCCCTCGGAAATAACAGG
131 ATTAGAGTATCCCCTCAAAAATAACAGG
* * * *
24687 GTTGGAGTATCCCCGATTGTGAGAAATTAATATTTTAGGAATAAAGTCGAGGTTAGAGTATCCCC
1 GTTGGAGTATCCCCGATTGTGAAAAACTAATATTTTAGAAATAAAATCGAGGTTAGAGTATCCCC
* * * *
24752 TCGAAAATAATGGGGTTGGAGTATCCCCGATTGTGAGAAATCTATATTTTAGAAATAAAGCTAGC
66 TCAAAAATAACGGGGTTGGAGTATCCCCGATTGTGAAAAATCTATATTTTAGAAATAAAGCCAGC
* * *
24817 ATTGGAGTATCCCTTCAAAAATAACGGG
131 ATTAGAGTATCCCCTCAAAAATAACAGG
24845 GTTGGAGTATCCCCGAT
1 GTTGGAGTATCCCCGAT
24862 GATTAATGGG
Statistics
Matches: 153, Mismatches: 22, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
158 153 1.00
ACGTcount: A:0.32, C:0.15, G:0.25, T:0.28
Consensus pattern (158 bp):
GTTGGAGTATCCCCGATTGTGAAAAACTAATATTTTAGAAATAAAATCGAGGTTAGAGTATCCCC
TCAAAAATAACGGGGTTGGAGTATCCCCGATTGTGAAAAATCTATATTTTAGAAATAAAGCCAGC
ATTAGAGTATCCCCTCAAAAATAACAGG
Found at i:24935 original size:51 final size:51
Alignment explanation
Indices: 24872--25104 Score: 270
Period size: 51 Copynumber: 4.6 Consensus size: 51
24862 GATTAATGGG
** *
24872 GTTGGAGTATCCCCGATTGTAAAAAATTGGTGTTTTGAAAATAAAATCAGA
1 GTTGGAGTATCCCCGATTGTGGAAAATTGGTGTTTTGAAAATAAAACCAGA
* * * * * *
24923 GTTGGAGCATCCCCGATTATAGAAAATTAGTGTTTTAAAAATAAAACCAGG
1 GTTGGAGTATCCCCGATTGTGGAAAATTGGTGTTTTGAAAATAAAACCAGA
* * * *
24974 GTTGGAGTATCCCCGATTGTGGAAAATTGATGTTTCGAAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTGTGGAAAATTGGTGTTTTGAAAATAAAACCAGA
* * * *
25025 GTTGGAGTATCCCCAATTGTGGAAAATTAGTGTTTT-AGAAATAAAACCGGG
1 GTTGGAGTATCCCCGATTGTGGAAAATTGGTGTTTTGA-AAATAAAACCAGA
* * *
25076 GTTGAAGTATCCCCGATTATGAAAAATTG
1 GTTGGAGTATCCCCGATTGTGGAAAATTG
25105 AGAAACTTAA
Statistics
Matches: 153, Mismatches: 28, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
50 1 0.01
51 152 0.99
ACGTcount: A:0.36, C:0.12, G:0.23, T:0.30
Consensus pattern (51 bp):
GTTGGAGTATCCCCGATTGTGGAAAATTGGTGTTTTGAAAATAAAACCAGA
Found at i:25000 original size:102 final size:102
Alignment explanation
Indices: 24870--25105 Score: 355
Period size: 102 Copynumber: 2.3 Consensus size: 102
24860 ATGATTAATG
* * *
24870 GGGTTGGAGTATCCCCGATTGTAAAAAATTGGTGTTTTGAAAATAAAATCAGAGTTGGAGCATCC
1 GGGTTGGAGTATCCCCGATTGTGAAAAATTGATGTTTCGAAAATAAAATCAGAGTTGGAGCATCC
*
24935 CCGATTATAGAAAATTAGTGTTTTAAAAATAAAACCA
66 CCAATTATAGAAAATTAGTGTTTTAAAAATAAAACCA
* * *
24972 GGGTTGGAGTATCCCCGATTGTGGAAAATTGATGTTTCGAAAATAAAATCGGAGTTGGAGTATCC
1 GGGTTGGAGTATCCCCGATTGTGAAAAATTGATGTTTCGAAAATAAAATCAGAGTTGGAGCATCC
* * * *
25037 CCAATTGTGGAAAATTAGTGTTTTAGAAATAAAACCG
66 CCAATTATAGAAAATTAGTGTTTTAAAAATAAAACCA
* *
25074 GGGTTGAAGTATCCCCGATTATGAAAAATTGA
1 GGGTTGGAGTATCCCCGATTGTGAAAAATTGA
25106 GAAACTTAAC
Statistics
Matches: 120, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
102 120 1.00
ACGTcount: A:0.36, C:0.12, G:0.23, T:0.29
Consensus pattern (102 bp):
GGGTTGGAGTATCCCCGATTGTGAAAAATTGATGTTTCGAAAATAAAATCAGAGTTGGAGCATCC
CCAATTATAGAAAATTAGTGTTTTAAAAATAAAACCA
Found at i:44233 original size:15 final size:15
Alignment explanation
Indices: 44213--44247 Score: 54
Period size: 14 Copynumber: 2.4 Consensus size: 15
44203 TATTGCACCC
*
44213 TTTTTTCTTTTT-TA
1 TTTTTTTTTTTTGTA
44227 TTTTTTTTTTTTGTA
1 TTTTTTTTTTTTGTA
44242 TTTTTT
1 TTTTTT
44248 CAAATAAGTC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 11 0.58
15 8 0.42
ACGTcount: A:0.06, C:0.03, G:0.03, T:0.89
Consensus pattern (15 bp):
TTTTTTTTTTTTGTA
Found at i:44858 original size:21 final size:21
Alignment explanation
Indices: 44818--44858 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
44808 TTAAGTTTAA
*
44818 ATATTTTTCAAGCTATAAATC
1 ATATTTTTCAAGCTAAAAATC
44839 ATATGTTTTCAAG-TAAAAAT
1 ATAT-TTTTCAAGCTAAAAAT
44859 AATCCAAAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 10 0.56
22 8 0.44
ACGTcount: A:0.41, C:0.10, G:0.07, T:0.41
Consensus pattern (21 bp):
ATATTTTTCAAGCTAAAAATC
Found at i:44977 original size:13 final size:13
Alignment explanation
Indices: 44959--44992 Score: 68
Period size: 13 Copynumber: 2.6 Consensus size: 13
44949 CACCCAAATA
44959 TATCGATACAATG
1 TATCGATACAATG
44972 TATCGATACAATG
1 TATCGATACAATG
44985 TATCGATA
1 TATCGATA
44993 TGTGTTCCTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.32
Consensus pattern (13 bp):
TATCGATACAATG
Found at i:51052 original size:24 final size:23
Alignment explanation
Indices: 51025--51084 Score: 68
Period size: 24 Copynumber: 2.5 Consensus size: 23
51015 ATAAAATTTT
51025 CATTACATAATAATATATTTATA-A
1 CATTA-ATAATAATAT-TTTATACA
51049 CATTAATAGATAATATTTTATACA
1 CATTAATA-ATAATATTTTATACA
*
51073 CAATATATAATA
1 CATTA-ATAATA
51085 TATCGAGCAT
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
23 9 0.28
24 20 0.62
25 3 0.09
ACGTcount: A:0.50, C:0.08, G:0.02, T:0.40
Consensus pattern (23 bp):
CATTAATAATAATATTTTATACA
Found at i:51082 original size:21 final size:24
Alignment explanation
Indices: 51034--51087 Score: 69
Period size: 21 Copynumber: 2.4 Consensus size: 24
51024 TCATTACATA
*
51034 ATAATATATTTATAACATTAATAG
1 ATAATATATTTATAACATCAATAG
*
51058 ATAATAT-TTTAT-ACA-CAATAT
1 ATAATATATTTATAACATCAATAG
51079 ATAATATAT
1 ATAATATAT
51088 CGAGCATCTA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
21 11 0.41
22 4 0.15
23 5 0.19
24 7 0.26
ACGTcount: A:0.50, C:0.06, G:0.02, T:0.43
Consensus pattern (24 bp):
ATAATATATTTATAACATCAATAG
Found at i:51264 original size:22 final size:22
Alignment explanation
Indices: 51234--51285 Score: 61
Period size: 22 Copynumber: 2.3 Consensus size: 22
51224 TAATTCAATG
51234 ATTTCAATAAGAATTTT-TTTTAT
1 ATTT-AATAA-AATTTTATTTTAT
*
51257 ATTTAATAAAATTTTATTTTTT
1 ATTTAATAAAATTTTATTTTAT
*
51279 AATTAAT
1 ATTTAAT
51286 CTTTTTATTT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
21 6 0.23
22 16 0.62
23 4 0.15
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.58
Consensus pattern (22 bp):
ATTTAATAAAATTTTATTTTAT
Found at i:51409 original size:14 final size:14
Alignment explanation
Indices: 51390--51437 Score: 53
Period size: 14 Copynumber: 3.4 Consensus size: 14
51380 CACAAGTTCA
51390 TAAAAAATATATTT
1 TAAAAAATATATTT
51404 TAAAAAATACT-TTT
1 TAAAAAATA-TATTT
* *
51418 CAAAAAATTTATTTT
1 TAAAAAATATA-TTT
51433 TAAAA
1 TAAAA
51438 TTAAAAAAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
13 1 0.04
14 19 0.68
15 8 0.29
ACGTcount: A:0.54, C:0.04, G:0.00, T:0.42
Consensus pattern (14 bp):
TAAAAAATATATTT
Found at i:51971 original size:14 final size:14
Alignment explanation
Indices: 51954--52020 Score: 59
Period size: 14 Copynumber: 4.8 Consensus size: 14
51944 AAGGAACGAA
51954 AAAATAAGAAAGAG
1 AAAATAAGAAAGAG
*
51968 AAAATAAGAGAGAG
1 AAAATAAGAAAGAG
51982 AAAA-AAGTAAAGA-
1 AAAATAAG-AAAGAG
* *
51995 AAAGTAAAGAGAGAGG
1 AAAAT-AAGAAAGA-G
52011 AAAA-AAGAAA
1 AAAATAAGAAA
52021 AAAAGGAAAA
Statistics
Matches: 42, Mismatches: 6, Indels: 10
0.72 0.10 0.17
Matches are distributed among these distances:
13 6 0.14
14 30 0.71
15 3 0.07
16 3 0.07
ACGTcount: A:0.70, C:0.00, G:0.24, T:0.06
Consensus pattern (14 bp):
AAAATAAGAAAGAG
Found at i:51995 original size:26 final size:28
Alignment explanation
Indices: 51954--52025 Score: 87
Period size: 28 Copynumber: 2.6 Consensus size: 28
51944 AAGGAACGAA
*
51954 AAAATAAGAAAGAGAAAAT-AAGAGAGA-G
1 AAAA-AAGAAAGA-AAAGTAAAGAGAGAGG
51982 AAAAAAGTAAAGAAAAGTAAAGAGAGAGG
1 AAAAAAG-AAAGAAAAGTAAAGAGAGAGG
52011 AAAAAAGAAA-AAAAG
1 AAAAAAGAAAGAAAAG
52026 GAAAATTTGT
Statistics
Matches: 40, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
27 12 0.30
28 20 0.50
29 8 0.20
ACGTcount: A:0.71, C:0.00, G:0.24, T:0.06
Consensus pattern (28 bp):
AAAAAAGAAAGAAAAGTAAAGAGAGAGG
Found at i:52807 original size:3 final size:3
Alignment explanation
Indices: 52799--52843 Score: 81
Period size: 3 Copynumber: 15.0 Consensus size: 3
52789 TCTCTACCAA
*
52799 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAC GAT GAT GAT GAT GAT
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT
52844 AATAATAATA
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.33, C:0.02, G:0.33, T:0.31
Consensus pattern (3 bp):
GAT
Found at i:56632 original size:3 final size:3
Alignment explanation
Indices: 56624--56649 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
56614 TCATTCACGT
56624 TTC TTC TTC TTC TTC TTC TTC TTC TT
1 TTC TTC TTC TTC TTC TTC TTC TTC TT
56650 TGTTATATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (3 bp):
TTC
Found at i:62641 original size:20 final size:21
Alignment explanation
Indices: 62596--62647 Score: 70
Period size: 20 Copynumber: 2.5 Consensus size: 21
62586 TTCTATAATT
** *
62596 TGTATCGATACAATTGGTGCA
1 TGTATCGATACAATAAGTGAA
62617 TGTATCGATAC-ATAAGTGAA
1 TGTATCGATACAATAAGTGAA
62637 TGTATCGATAC
1 TGTATCGATAC
62648 GTATCTCAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
20 17 0.61
21 11 0.39
ACGTcount: A:0.33, C:0.13, G:0.21, T:0.33
Consensus pattern (21 bp):
TGTATCGATACAATAAGTGAA
Found at i:66918 original size:20 final size:20
Alignment explanation
Indices: 66893--66946 Score: 83
Period size: 20 Copynumber: 2.7 Consensus size: 20
66883 GTTAGAAGCA
*
66893 ATGTATCGATACAAT-TCATC
1 ATGTATCGATACAATGT-ACC
66913 ATGTATCGATACAATGTACC
1 ATGTATCGATACAATGTACC
66933 ATGTATCGATACAA
1 ATGTATCGATACAA
66947 ACAGTGGTAG
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
20 31 0.97
21 1 0.03
ACGTcount: A:0.37, C:0.19, G:0.13, T:0.31
Consensus pattern (20 bp):
ATGTATCGATACAATGTACC
Found at i:67019 original size:19 final size:19
Alignment explanation
Indices: 66974--67027 Score: 83
Period size: 19 Copynumber: 2.8 Consensus size: 19
66964 ACTGCCAGTT
66974 TCATGTATCGATACAATTG
1 TCATGTATCGATACAATTG
66993 TCCATGTATCGATACAA-TG
1 T-CATGTATCGATACAATTG
67012 ATCATGTATCGATACA
1 -TCATGTATCGATACA
67028 TCTGGGTGTG
Statistics
Matches: 33, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
19 17 0.52
20 16 0.48
ACGTcount: A:0.33, C:0.19, G:0.15, T:0.33
Consensus pattern (19 bp):
TCATGTATCGATACAATTG
Found at i:67636 original size:27 final size:27
Alignment explanation
Indices: 67591--67663 Score: 112
Period size: 27 Copynumber: 2.7 Consensus size: 27
67581 TAATGCTTAC
* * *
67591 GTTAAAAAAATTCTC-CCCCTTAATCG
1 GTTAAAAAGATTTTCTCCCCTTAATCA
67617 GTTAAAAAGATTTTCTCCCCTTAATCA
1 GTTAAAAAGATTTTCTCCCCTTAATCA
67644 GTTAAAAAGATTTTCTCCCC
1 GTTAAAAAGATTTTCTCCCC
67664 CTGGATAAAA
Statistics
Matches: 43, Mismatches: 3, Indels: 1
0.91 0.06 0.02
Matches are distributed among these distances:
26 13 0.30
27 30 0.70
ACGTcount: A:0.33, C:0.25, G:0.08, T:0.34
Consensus pattern (27 bp):
GTTAAAAAGATTTTCTCCCCTTAATCA
Found at i:67636 original size:28 final size:28
Alignment explanation
Indices: 67601--67665 Score: 114
Period size: 27 Copynumber: 2.4 Consensus size: 28
67591 GTTAAAAAAA
*
67601 TTCTCCCCCTTAATCGGTTAAAAAGATT
1 TTCTCCCCCTTAATCAGTTAAAAAGATT
67629 TTCT-CCCCTTAATCAGTTAAAAAGATT
1 TTCTCCCCCTTAATCAGTTAAAAAGATT
67656 TTCTCCCCCT
1 TTCTCCCCCT
67666 GGATAAAAAT
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
27 26 0.74
28 9 0.26
ACGTcount: A:0.26, C:0.29, G:0.08, T:0.37
Consensus pattern (28 bp):
TTCTCCCCCTTAATCAGTTAAAAAGATT
Found at i:69580 original size:13 final size:13
Alignment explanation
Indices: 69562--69586 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
69552 TAGTAACCCA
69562 TGTATCGATACAT
1 TGTATCGATACAT
69575 TGTATCGATACA
1 TGTATCGATACA
69587 AGGAATATTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:75860 original size:19 final size:18
Alignment explanation
Indices: 75815--75872 Score: 80
Period size: 19 Copynumber: 3.1 Consensus size: 18
75805 ACTACCAGTT
75815 TCATGTATCGATACAATTG
1 TCATGTATCGATACAA-TG
75834 TCCATGTATCGATACAATG
1 T-CATGTATCGATACAATG
*
75853 ATCATGTATCAATACAATG
1 -TCATGTATCGATACAATG
75872 T
1 T
75873 ATCGATACAA
Statistics
Matches: 36, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
18 1 0.03
19 19 0.53
20 16 0.44
ACGTcount: A:0.34, C:0.17, G:0.14, T:0.34
Consensus pattern (18 bp):
TCATGTATCGATACAATG
Found at i:79765 original size:34 final size:34
Alignment explanation
Indices: 79701--79766 Score: 82
Period size: 34 Copynumber: 1.9 Consensus size: 34
79691 GTGGCACCAT
*
79701 TTTTAAGTCTACAACTCCGTGACCCTCTTTTTCC
1 TTTTAAGTCTACAACTCCGTGAACCTCTTTTTCC
*
79735 TTTTAAGT-TCACAACTTCGTGGAACC-CTTTTT
1 TTTTAAGTCT-ACAACTCCGT-GAACCTCTTTTT
79767 TGGCACCCTT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
33 1 0.04
34 23 0.82
35 4 0.14
ACGTcount: A:0.20, C:0.27, G:0.11, T:0.42
Consensus pattern (34 bp):
TTTTAAGTCTACAACTCCGTGAACCTCTTTTTCC
Found at i:79810 original size:34 final size:34
Alignment explanation
Indices: 79767--80065 Score: 217
Period size: 34 Copynumber: 9.4 Consensus size: 34
79757 AACCCTTTTT
79767 TGGCACCCTTTTTCTTTTTAAGTCCACAACTCTG
1 TGGCACCCTTTTTCTTTTTAAGTCCACAACTCTG
* * *
79801 TGGCACCC----T-TTTTAAAATCCACAACTCTA
1 TGGCACCCTTTTTCTTTTTAAGTCCACAACTCTG
* * *
79830 TGGC-CTCTTTTT-TTTTCAAGTCTACAACT-TCG
1 TGGCACCCTTTTTCTTTTTAAGTCCACAACTCT-G
* * *
79862 TGGAACCCATTTTCTTTTTAAGTCCACAATTCTG
1 TGGCACCCTTTTTCTTTTTAAGTCCACAACTCTG
*
79896 TGGCA-CCTGTTTCTTTTTAAGTCCACAACTCTG
1 TGGCACCCTTTTTCTTTTTAAGTCCACAACTCTG
* * * *
79929 TGGCATCCTTTTTCTTTTTAAGTCTATAACTCCG
1 TGGCACCCTTTTTCTTTTTAAGTCCACAACTCTG
* * *
79963 TGGCA-CC---AT-TTTTAAAGTCCACAACTCTC
1 TGGCACCCTTTTTCTTTTTAAGTCCACAACTCTG
* * *
79992 TGG---CC--TTT-TTTTTAAGTCCATAACTTTA
1 TGGCACCCTTTTTCTTTTTAAGTCCACAACTCTG
* * *
80020 TGGCACCTTTTTTCTTTTTAAGTCTATAACT-TCG
1 TGGCACCCTTTTTCTTTTTAAGTCCACAACTCT-G
*
80054 TAGCACCCTTTT
1 TGGCACCCTTTT
80066 AAGTCTACAA
Statistics
Matches: 210, Mismatches: 38, Indels: 34
0.74 0.13 0.12
Matches are distributed among these distances:
27 2 0.01
28 22 0.10
29 39 0.19
30 2 0.01
31 2 0.01
32 18 0.09
33 42 0.20
34 82 0.39
35 1 0.00
ACGTcount: A:0.21, C:0.26, G:0.11, T:0.42
Consensus pattern (34 bp):
TGGCACCCTTTTTCTTTTTAAGTCCACAACTCTG
Found at i:79839 original size:28 final size:28
Alignment explanation
Indices: 79779--79841 Score: 83
Period size: 29 Copynumber: 2.2 Consensus size: 28
79769 GCACCCTTTT
* *
79779 TCTTTTTAAGTCCACAACTCTGTGGCAC
1 TCTTTTTAAATCCACAACTCTATGGCAC
*
79807 CCTTTTTAAAATCCACAACTCTATGGC-C
1 TCTTTTT-AAATCCACAACTCTATGGCAC
79835 TCTTTTT
1 TCTTTTT
79842 TTTTCAAGTC
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
28 13 0.43
29 17 0.57
ACGTcount: A:0.22, C:0.29, G:0.10, T:0.40
Consensus pattern (28 bp):
TCTTTTTAAATCCACAACTCTATGGCAC
Found at i:79966 original size:67 final size:64
Alignment explanation
Indices: 79767--80043 Score: 213
Period size: 67 Copynumber: 4.3 Consensus size: 64
79757 AACCCTTTTT
*
79767 TGGCACCCTTTTTCTTTTTAAGTCCACAACTCTGTGGCACC----CTTTTTAAAATCCACAACTC
1 TGGCA-CC-TTTTCTTTTTAAGTCCACAACTCTGTGGCACCTTTTCTTTTT-AAGTCCACAACTC
*
79828 TA
63 TG
* * *
79830 TGGC-CTCTTTT-TTTTTCAAGTCTACAACT-TCGTGGAACCCATTTTCTTTTTAAGTCCACAAT
1 TGGCAC-CTTTTCTTTTT-AAGTCCACAACTCT-GTGGCA-CC-TTTTCTTTTTAAGTCCACAAC
79892 TCTG
61 TCTG
* *
79896 TGGCACCTGTTTCTTTTTAAGTCCACAACTCTGTGGCATCCTTTTTCTTTTTAAGTCTATAACTC
1 TGGCACCT-TTTCTTTTTAAGTCCACAACTCTGTGGCA-CC-TTTTCTTTTTAAGTCCACAACTC
*
79961 CG
63 TG
* * * * * *
79963 TGGCACC--AT-TTTTAAAGTCCACAACTCTCTGG--CC-TTT-TTTTTAAGTCCATAACTTTA
1 TGGCACCTTTTCTTTTTAAGTCCACAACTCTGTGGCACCTTTTCTTTTTAAGTCCACAACTCTG
80020 TGGCACCTTTTTTCTTTTTAAGTC
1 TGGCACC--TTTTCTTTTTAAGTC
80044 TATAACTTCG
Statistics
Matches: 174, Mismatches: 22, Indels: 37
0.75 0.09 0.16
Matches are distributed among these distances:
57 23 0.13
58 3 0.02
60 8 0.05
61 22 0.13
62 12 0.07
63 25 0.14
64 1 0.01
66 18 0.10
67 56 0.32
68 6 0.03
ACGTcount: A:0.21, C:0.26, G:0.12, T:0.42
Consensus pattern (64 bp):
TGGCACCTTTTCTTTTTAAGTCCACAACTCTGTGGCACCTTTTCTTTTTAAGTCCACAACTCTG
Found at i:80024 original size:91 final size:90
Alignment explanation
Indices: 79781--80084 Score: 283
Period size: 91 Copynumber: 3.3 Consensus size: 90
79771 ACCCTTTTTC
** * * *
79781 TTTTTAAGTCCACAACTCTGTGGCACCCTTTTTAAAATCCACAACTCTATGGCCT-CTTTTT-TT
1 TTTTTAAGTCCACAACTCTGTGGC-CTTTTTTTTAAGTCCACAACTCTATGGCATCCTTTTTCTT
* * *
79844 TTCAAGTCTACAACTTCGTGGAACCCA
65 TTTAAGTCTATAACTTCGTGGCA-CCA
* *
79871 TTTTCTTTTTAAGTCCACAATTCTGTGGCACCTGTTTCTTTTTAAGTCCACAACTCTGTGGCATC
1 -----TTTTTAAGTCCACAACTCTGTGG--CC--TTT-TTTTTAAGTCCACAACTCTATGGCATC
*
79936 CTTTTTCTTTTTAAGTCTATAACTCCGTGGCACCA
56 CTTTTTCTTTTTAAGTCTATAACTTCGTGGCACCA
* * *
79971 TTTTTAAAGTCCACAACTCTCTGGCCTTTTTTTTAAGTCCATAACTTTATGGCA-CCTTTTTTCT
1 TTTTT-AAGTCCACAACTCTGTGGCCTTTTTTTTAAGTCCACAACTCTATGGCATCC-TTTTTCT
*
80035 TTTTAAGTCTATAACTTCGTAGCACC-
64 TTTTAAGTCTATAACTTCGTGGCACCA
* * * *
80061 CTTTTAAGTCTACAATTCAGTGGC
1 TTTTTAAGTCCACAACTCTGTGGC
80085 ACATTTTTCT
Statistics
Matches: 177, Mismatches: 23, Indels: 24
0.79 0.10 0.11
Matches are distributed among these distances:
89 15 0.08
90 6 0.03
91 53 0.30
92 3 0.02
94 2 0.01
95 27 0.15
96 17 0.10
97 1 0.01
98 1 0.01
99 22 0.12
100 9 0.05
101 21 0.12
ACGTcount: A:0.22, C:0.25, G:0.12, T:0.41
Consensus pattern (90 bp):
TTTTTAAGTCCACAACTCTGTGGCCTTTTTTTTAAGTCCACAACTCTATGGCATCCTTTTTCTTT
TTAAGTCTATAACTTCGTGGCACCA
Found at i:80092 original size:27 final size:27
Alignment explanation
Indices: 80034--80092 Score: 66
Period size: 27 Copynumber: 2.2 Consensus size: 27
80024 ACCTTTTTTC
* *
80034 TTTTTAAGTCTATAACTTCGTAGCACC
1 TTTTTAAGTCTACAACTTCGTAGCACA
* *
80061 CTTTTAAGTCTACAA-TTCAGTGGCACA
1 TTTTTAAGTCTACAACTTC-GTAGCACA
80088 TTTTT
1 TTTTT
80093 CTTTTAAAGC
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
26 3 0.12
27 23 0.88
ACGTcount: A:0.25, C:0.20, G:0.12, T:0.42
Consensus pattern (27 bp):
TTTTTAAGTCTACAACTTCGTAGCACA
Found at i:80138 original size:31 final size:31
Alignment explanation
Indices: 80093--80777 Score: 631
Period size: 31 Copynumber: 22.1 Consensus size: 31
80083 GCACATTTTT
*
80093 CTTT-TAAAGCCCACACAAGTCAGTGGCAAC
1 CTTTCTAAAGCCCACACAAGTCGGTGGCAAC
* *
80123 CTTTCTAAAGTCCACACAAGTTGGTGGCAACC
1 CTTTCTAAAGCCCACACAAGTCGGTGGCAA-C
* * *
80155 CTTCTCTAAAGCACATACAAGTCGATGGCAAC
1 CTT-TCTAAAGCCCACACAAGTCGGTGGCAAC
* *
80187 CCTT-T------CACACAAGTCGGTAGCAAC
1 CTTTCTAAAGCCCACACAAGTCGGTGGCAAC
* * *
80211 CCTTCTAAAGTCCACACAAGTCGATGGCAAC
1 CTTTCTAAAGCCCACACAAGTCGGTGGCAAC
* * * *
80242 CTTTTTAAAACCCACACAAGTCAGTGTCAAC
1 CTTTCTAAAGCCCACACAAGTCGGTGGCAAC
* * *
80273 CCTTCTAAAGCCCATACAAGTCGGTGGCATCC
1 CTTTCTAAAGCCCACACAAGTCGGTGGCA-AC
** *
80305 CTTCTCTAAAGCCCACATTAGTTGGTGGCAAC
1 CTT-TCTAAAGCCCACACAAGTCGGTGGCAAC
*** *
80337 CCCACTAAAGCCCACACAAGTCGGTAGCAAC
1 CTTTCTAAAGCCCACACAAGTCGGTGGCAAC
* * * *
80368 CCTTCTAAAGTCCATACAAGTCGATGGCAACC
1 CTTTCTAAAGCCCACACAAGTCGGTGGCAA-C
* *
80400 CTCCTCTAAAGCCCACACAAGTCAGTGGCAAC
1 CT-TTCTAAAGCCCACACAAGTCGGTGGCAAC
* * *
80432 CCTTCTAAAGGCCACACAAGTCGGTGGTAAC
1 CTTTCTAAAGCCCACACAAGTCGGTGGCAAC
* * *
80463 CCTTCTAAAGCCCACACAAGT-TGTAGCAACCC
1 CTTTCTAAAGCCCACACAAGTCGGTGGCAA--C
*
80495 CTTTCTAAAGCCTACACAAGTCGGTGGCAACC
1 CTTTCTAAAGCCCACACAAGTCGGTGGCAA-C
* *
80527 CTTT-TAAAGCCCACACAAGTCAGTGGCAAT
1 CTTTCTAAAGCCCACACAAGTCGGTGGCAAC
* * **
80557 CTATCTAAAGCCTACACAAGTTAGTGGCAAC
1 CTTTCTAAAGCCCACACAAGTCGGTGGCAAC
** *
80588 CTATCTCTAAA-CCCACACAAGTCAATGGTAAC
1 CT-T-TCTAAAGCCCACACAAGTCGGTGGCAAC
* * *
80620 CCTTCTAAAGCCCACAAAAGTCGATGGCAAC
1 CTTTCTAAAGCCCACACAAGTCGGTGGCAAC
* * * *
80651 CCTTCTAAAGCCCATACAAGTTGGTGGCATC
1 CTTTCTAAAGCCCACACAAGTCGGTGGCAAC
*
80682 CTTTCTAAAGCCCACACAAGTTGGTGGCAAC
1 CTTTCTAAAGCCCACACAAGTCGGTGGCAAC
* * * *
80713 CCTTCTAAAGCCCGCATAAGTTGGTGGCAAC
1 CTTTCTAAAGCCCACACAAGTCGGTGGCAAC
*
80744 AC-TTCTAAAGCCCACACAAGTTGGTGGC-AC
1 -CTTTCTAAAGCCCACACAAGTCGGTGGCAAC
80774 CTTT
1 CTTT
80778 TAGTCTTCAA
Statistics
Matches: 537, Mismatches: 95, Indels: 46
0.79 0.14 0.07
Matches are distributed among these distances:
24 20 0.04
25 1 0.00
29 1 0.00
30 23 0.04
31 352 0.66
32 61 0.11
33 79 0.15
ACGTcount: A:0.31, C:0.31, G:0.17, T:0.21
Consensus pattern (31 bp):
CTTTCTAAAGCCCACACAAGTCGGTGGCAAC
Found at i:80238 original size:55 final size:57
Alignment explanation
Indices: 80135--80242 Score: 159
Period size: 55 Copynumber: 1.9 Consensus size: 57
80125 TTCTAAAGTC
* * *
80135 CACACAAGTTGGTGGCAACCCTTCTCTAAAGCACATACAAGTCGATGGCAACCCTTT
1 CACACAAGTCGGTAGCAACCCTTCTCTAAAGCACACACAAGTCGATGGCAACCCTTT
80192 CACACAAGTCGGTAGCAACCC-T-TCTAAAGTC-CACACAAGTCGATGGCAACC
1 CACACAAGTCGGTAGCAACCCTTCTCTAAAG-CACACACAAGTCGATGGCAACC
80243 TTTTTAAAAC
Statistics
Matches: 47, Mismatches: 3, Indels: 4
0.87 0.06 0.07
Matches are distributed among these distances:
55 26 0.55
56 2 0.04
57 19 0.40
ACGTcount: A:0.31, C:0.31, G:0.18, T:0.19
Consensus pattern (57 bp):
CACACAAGTCGGTAGCAACCCTTCTCTAAAGCACACACAAGTCGATGGCAACCCTTT
Found at i:80334 original size:95 final size:94
Alignment explanation
Indices: 80097--80772 Score: 714
Period size: 95 Copynumber: 7.3 Consensus size: 94
80087 ATTTTTCTTT
* * *
80097 TAAAGCCCACACAAGTCAGTGGCAA-CCTTTCTAAAGTCCACACAAGTTGGTGGCAACCCTTCTC
1 TAAAGCCCACACAAGTCGGTGGCAACCCTTTCTAAAGCCCACACAAGTCGGTGGCAACCC-T-TC
* * *
80161 TAAAGCACATACAAGTCGATGGCAACCCTT-
64 TAAAGCCCACACAAGTCGGTGGCAACCCTTC
* * * * *
80191 T------CACACAAGTCGGTAGCAACCC-TTCTAAAGTCCACACAAGTCGATGGCAACCTTTTTA
1 TAAAGCCCACACAAGTCGGTGGCAACCCTTTCTAAAGCCCACACAAGTCGGTGGCAACCCTTCTA
* * *
80249 AAACCCACACAAGTCAGTGTCAACCCTTC
66 AAGCCCACACAAGTCGGTGGCAACCCTTC
* * ** * **
80278 TAAAGCCCATACAAGTCGGTGGCATCCCTTCTCTAAAGCCCACATTAGTTGGTGGCAACCCCACT
1 TAAAGCCCACACAAGTCGGTGGCAACCCTT-TCTAAAGCCCACACAAGTCGGTGGCAACCCTTCT
*
80343 AAAGCCCACACAAGTCGGTAGCAACCCTTC
65 AAAGCCCACACAAGTCGGTGGCAACCCTTC
* * * * *
80373 TAAAGTCCATACAAGTCGATGGCAACCCTCCTCTAAAGCCCACACAAGTCAGTGGCAACCCTTCT
1 TAAAGCCCACACAAGTCGGTGGCAACCCT-TTCTAAAGCCCACACAAGTCGGTGGCAACCCTTCT
* *
80438 AAAGGCCACACAAGTCGGTGGTAACCCTTC
65 AAAGCCCACACAAGTCGGTGGCAACCCTTC
* * * *
80468 TAAAGCCCACACAAGT-TGTAGCAACCCCTTTCTAAAGCCTACACAAGTCGGTGGCAACCCTTTT
1 TAAAGCCCACACAAGTCGGTGGCAA-CCCTTTCTAAAGCCCACACAAGTCGGTGGCAACCCTTCT
* *
80532 AAAGCCCACACAAGTCAGTGGCAA-TCTATC
65 AAAGCCCACACAAGTCGGTGGCAACCCT-TC
* ** ** *
80562 TAAAGCCTACACAAGTTAGTGGCAA-CCTATCTCTAAA-CCCACACAAGTCAATGGTAACCCTTC
1 TAAAGCCCACACAAGTCGGTGGCAACCCT-T-TCTAAAGCCCACACAAGTCGGTGGCAACCCTTC
* *
80625 TAAAGCCCACAAAAGTCGATGGCAACCCTTC
64 TAAAGCCCACACAAGTCGGTGGCAACCCTTC
* * * *
80656 TAAAGCCCATACAAGTTGGTGGC-ATCCTTTCTAAAGCCCACACAAGTTGGTGGCAACCCTTCTA
1 TAAAGCCCACACAAGTCGGTGGCAACCCTTTCTAAAGCCCACACAAGTCGGTGGCAACCCTTCTA
* * * *
80720 AAGCCCGCATAAGTTGGTGGCAACACTTC
66 AAGCCCACACAAGTCGGTGGCAACCCTTC
*
80749 TAAAGCCCACACAAGTTGGTGGCA
1 TAAAGCCCACACAAGTCGGTGGCA
80773 CCTTTTAGTC
Statistics
Matches: 483, Mismatches: 79, Indels: 40
0.80 0.13 0.07
Matches are distributed among these distances:
86 25 0.05
87 2 0.00
88 44 0.09
89 2 0.00
92 6 0.01
93 95 0.20
94 145 0.30
95 164 0.34
ACGTcount: A:0.31, C:0.31, G:0.17, T:0.21
Consensus pattern (94 bp):
TAAAGCCCACACAAGTCGGTGGCAACCCTTTCTAAAGCCCACACAAGTCGGTGGCAACCCTTCTA
AAGCCCACACAAGTCGGTGGCAACCCTTC
Found at i:80847 original size:59 final size:60
Alignment explanation
Indices: 80749--80868 Score: 197
Period size: 59 Copynumber: 2.0 Consensus size: 60
80739 GCAACACTTC
* * * *
80749 TAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCTTCAAAGAGTAGGATG-CTTTTTTTT
1 TAAAGCCCACAAAAGTTGGTGGCACCTTTTAATCCTCAAAGAGTAGGACGCCTTTTTTTT
80808 TAAAGCCCACAAAAGTTGGTGGCACCTTTTAATCCTCAAAGAGTAGGACGCCTTTTTTTT
1 TAAAGCCCACAAAAGTTGGTGGCACCTTTTAATCCTCAAAGAGTAGGACGCCTTTTTTTT
80868 T
1 T
80869 TCTCTTTTTA
Statistics
Matches: 56, Mismatches: 4, Indels: 1
0.92 0.07 0.02
Matches are distributed among these distances:
59 46 0.82
60 10 0.18
ACGTcount: A:0.27, C:0.20, G:0.19, T:0.34
Consensus pattern (60 bp):
TAAAGCCCACAAAAGTTGGTGGCACCTTTTAATCCTCAAAGAGTAGGACGCCTTTTTTTT
Found at i:80987 original size:68 final size:67
Alignment explanation
Indices: 80902--81085 Score: 237
Period size: 68 Copynumber: 2.7 Consensus size: 67
80892 TGGTGGCATC
* * *
80902 CCTTTCTTTTTCCTTTTTAAAGCCTACACAAGTTGGTGACACCTTTTAGTCC-TCAAAGAGC-AG
1 CCTTTCTTTTTCTTTTTTTAAGCCTACACAAGTTGGTGGCACCTTTTAGTCCAT-AAAGAGCAAG
80965 AACG
65 -ACG
* * *
80969 CCTTTACTTTTTCTTTTTTTAGGCCCACACAAATTGGTGGCACCTTTTAGTCCATAAAGAGCAAG
1 CCTTT-CTTTTTCTTTTTTTAAGCCTACACAAGTTGGTGGCACCTTTTAGTCCATAAAGAGCAAG
81034 ACG
65 ACG
* *
81037 CTTTTTCTTTTTCTTTTTTTAAGCCTACATAAGTTGGTGGCATCCTTTT
1 C-CTTTCTTTTTCTTTTTTTAAGCCTACACAAGTTGGTGGCA-CCTTTT
81086 TTTTTTTCTT
Statistics
Matches: 101, Mismatches: 11, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
67 5 0.05
68 84 0.83
69 12 0.12
ACGTcount: A:0.22, C:0.23, G:0.15, T:0.40
Consensus pattern (67 bp):
CCTTTCTTTTTCTTTTTTTAAGCCTACACAAGTTGGTGGCACCTTTTAGTCCATAAAGAGCAAGA
CG
Found at i:81006 original size:111 final size:111
Alignment explanation
Indices: 80804--81010 Score: 297
Period size: 111 Copynumber: 1.9 Consensus size: 111
80794 GGATGCTTTT
* * * **
80804 TTTTTAAAGCCCACAAAAGTTGGTGGCACCTTTTAATCCTCAAAGAGTAGGACGCCTTTTTTTTT
1 TTTTTAAAGCCCACAAAAGTTGGTGACACCTTTTAATCCTCAAAGAGCAGAACGCCTTTACTTTT
* * *
80869 TCTCTTTTTAAGTCCACATAAGTTGGTGGCATCCCTTTCTTTTTCC
66 TCTCTTTTTAAGCCCACACAAATTGGTGGCATCCCTTTCTTTTTCC
* * *
80915 TTTTTAAAGCCTACACAAGTTGGTGACACCTTTTAGTCCTCAAAGAGCAGAACGCCTTTACTTTT
1 TTTTTAAAGCCCACAAAAGTTGGTGACACCTTTTAATCCTCAAAGAGCAGAACGCCTTTACTTTT
* *
80980 TCTTTTTTTAGGCCCACACAAATTGGTGGCA
66 TCTCTTTTTAAGCCCACACAAATTGGTGGCA
81011 CCTTTTAGTC
Statistics
Matches: 83, Mismatches: 13, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
111 83 1.00
ACGTcount: A:0.24, C:0.23, G:0.16, T:0.38
Consensus pattern (111 bp):
TTTTTAAAGCCCACAAAAGTTGGTGACACCTTTTAATCCTCAAAGAGCAGAACGCCTTTACTTTT
TCTCTTTTTAAGCCCACACAAATTGGTGGCATCCCTTTCTTTTTCC
Found at i:81858 original size:21 final size:20
Alignment explanation
Indices: 81813--81866 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 20
81803 CAATTGGTGC
* *
81813 ATGTATCGATACATAAGTTA
1 ATGTATCGATACATAACTAA
*
81833 ATGTATCGATACATATCTCAA
1 ATGTATCGATACATAACT-AA
*
81854 ATGTATCAATACA
1 ATGTATCGATACA
81867 GGACAATCTT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
20 16 0.55
21 13 0.45
ACGTcount: A:0.41, C:0.15, G:0.11, T:0.33
Consensus pattern (20 bp):
ATGTATCGATACATAACTAA
Found at i:82639 original size:12 final size:13
Alignment explanation
Indices: 82622--82650 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
82612 TGCATTTGAC
82622 TTTTCTTT-TTCT
1 TTTTCTTTATTCT
82634 TTTTCTTTATTCT
1 TTTTCTTTATTCT
82647 TTTT
1 TTTT
82651 TTTCTTGAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 8 0.50
13 8 0.50
ACGTcount: A:0.03, C:0.14, G:0.00, T:0.83
Consensus pattern (13 bp):
TTTTCTTTATTCT
Found at i:83578 original size:80 final size:80
Alignment explanation
Indices: 83465--83710 Score: 293
Period size: 80 Copynumber: 3.1 Consensus size: 80
83455 ACTAAGGTTG
* ** * *
83465 GAGTATCCCCTCGGAGATGGTGGGGTTTAAGTATCCCCAAAGATGAATAATTCAATATTTTGGAA
1 GAGTATCCCCTCAGAGATGGTGGGGTTGGAGTATCCCCAAAGATGAAAAATTCAACATTTTGGAA
83530 GTAAAAATGGAG-TTA
66 GTAAAAATGG-GCTTA
* ** *
83545 GAGTA-CCCCTTCAGAGATGGTAGGGTTGGAGTAT-CCCAAGAGATGAAAAATTTGACGTTTTGG
1 GAGTATCCCC-TCAGAGATGGTGGGGTTGGAGTATCCCCAA-AGATGAAAAATTCAACATTTTGG
*
83608 AAGTAAAATTGGGCTTA
64 AAGTAAAAATGGGCTTA
* * *
83625 GAGTATCCCCTCAGAGATGGTGGGGTTGGAGTATCCCCAAAGGTAAAAAATTCAGCATTTTGGAA
1 GAGTATCCCCTCAGAGATGGTGGGGTTGGAGTATCCCCAAAGATGAAAAATTCAACATTTTGGAA
* * *
83690 G-AAAAACGGGGTTG
66 GTAAAAATGGGCTTA
83704 GAGTATC
1 GAGTATC
83711 TCTGTTAGGA
Statistics
Matches: 140, Mismatches: 21, Indels: 11
0.81 0.12 0.06
Matches are distributed among these distances:
79 26 0.19
80 105 0.75
81 9 0.06
ACGTcount: A:0.32, C:0.13, G:0.28, T:0.26
Consensus pattern (80 bp):
GAGTATCCCCTCAGAGATGGTGGGGTTGGAGTATCCCCAAAGATGAAAAATTCAACATTTTGGAA
GTAAAAATGGGCTTA
Found at i:84003 original size:20 final size:20
Alignment explanation
Indices: 83974--84014 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
83964 AAAGGTCAAA
*
83974 ACCTTTAAATGTATCGATAC
1 ACCTTCAAATGTATCGATAC
83994 ACCTTCAAATGTATCGATAC
1 ACCTTCAAATGTATCGATAC
84014 A
1 A
84015 TAATGCACAG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.37, C:0.22, G:0.10, T:0.32
Consensus pattern (20 bp):
ACCTTCAAATGTATCGATAC
Found at i:84059 original size:20 final size:22
Alignment explanation
Indices: 84034--84088 Score: 71
Period size: 20 Copynumber: 2.6 Consensus size: 22
84024 GTATCGATAC
*
84034 AATGTATCGATACATGAC-CA-
1 AATGTATCGATACATGACAAAG
*
84054 AATGTATCGATAC-TTACAAAG
1 AATGTATCGATACATGACAAAG
84075 AATGTATCGATACA
1 AATGTATCGATACA
84089 GGTGATTGGC
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
19 3 0.10
20 14 0.47
21 13 0.43
ACGTcount: A:0.42, C:0.16, G:0.15, T:0.27
Consensus pattern (22 bp):
AATGTATCGATACATGACAAAG
Found at i:84061 original size:33 final size:33
Alignment explanation
Indices: 84001--84066 Score: 89
Period size: 33 Copynumber: 2.0 Consensus size: 33
83991 TACACCTTCA
* *
84001 AATGTATCGATACATAATGCACAGTATCGATAC
1 AATGTATCGATACATAATCCAAAGTATCGATAC
*
84034 AATGTATCGATACATGA-CCAAATGTATCGATAC
1 AATGTATCGATACATAATCCAAA-GTATCGATAC
84067 TTACAAAGAA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
32 3 0.10
33 26 0.90
ACGTcount: A:0.39, C:0.18, G:0.15, T:0.27
Consensus pattern (33 bp):
AATGTATCGATACATAATCCAAAGTATCGATAC
Found at i:84166 original size:13 final size:13
Alignment explanation
Indices: 84148--84173 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
84138 TACACACAAG
84148 ATGTATCGATACA
1 ATGTATCGATACA
84161 ATGTATCGATACA
1 ATGTATCGATACA
84174 TCCCAAAATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:90571 original size:13 final size:13
Alignment explanation
Indices: 90553--90577 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
90543 CAGCATTCTC
90553 TGTATCGATACAT
1 TGTATCGATACAT
90566 TGTATCGATACA
1 TGTATCGATACA
90578 AAGGGTTTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:91044 original size:20 final size:22
Alignment explanation
Indices: 91019--91063 Score: 67
Period size: 20 Copynumber: 2.1 Consensus size: 22
91009 GCAGCACTCA
*
91019 CCAGGTCGCGACC-GGCA-CCC
1 CCAGGTCGCAACCGGGCAGCCC
91039 CCAGGTCGCAACCGGGCAGCCC
1 CCAGGTCGCAACCGGGCAGCCC
91061 CCA
1 CCA
91064 CACTCACAGC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 12 0.55
21 4 0.18
22 6 0.27
ACGTcount: A:0.18, C:0.49, G:0.29, T:0.04
Consensus pattern (22 bp):
CCAGGTCGCAACCGGGCAGCCC
Found at i:92454 original size:16 final size:16
Alignment explanation
Indices: 92435--92465 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
92425 TGATTAAAAG
92435 AAATTGTTAAATTGCA
1 AAATTGTTAAATTGCA
92451 AAATTGTTAAATTGC
1 AAATTGTTAAATTGC
92466 TTTATTAAGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.42, C:0.06, G:0.13, T:0.39
Consensus pattern (16 bp):
AAATTGTTAAATTGCA
Found at i:93036 original size:20 final size:19
Alignment explanation
Indices: 93007--93045 Score: 69
Period size: 20 Copynumber: 2.0 Consensus size: 19
92997 AGGTCAAAAC
93007 CCTTAAATGTATCGATACA
1 CCTTAAATGTATCGATACA
93026 CCTTCAAATGTATCGATACA
1 CCTT-AAATGTATCGATACA
93046 TAATGCATAG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 4 0.21
20 15 0.79
ACGTcount: A:0.36, C:0.23, G:0.10, T:0.31
Consensus pattern (19 bp):
CCTTAAATGTATCGATACA
Found at i:93078 original size:20 final size:20
Alignment explanation
Indices: 93011--93106 Score: 70
Period size: 20 Copynumber: 4.8 Consensus size: 20
93001 CAAAACCCTT
****
93011 AAATGTATCGATACACCTTC
1 AAATGTATCGATACATAACC
*
93031 AAATGTATCGATACATAATGC
1 AAATGTATCGATACATAA-CC
* *
93052 ATA-GTATCGATACATGACC
1 AAATGTATCGATACATAACC
* *
93071 AAATGTATCGATAC-TTACAA
1 AAATGTATCGATACATAAC-C
93091 AGAATGTATCGATACA
1 A-AATGTATCGATACA
93107 GGTGATTGGC
Statistics
Matches: 61, Mismatches: 10, Indels: 8
0.77 0.13 0.10
Matches are distributed among these distances:
19 6 0.10
20 39 0.64
21 16 0.26
ACGTcount: A:0.41, C:0.18, G:0.14, T:0.28
Consensus pattern (20 bp):
AAATGTATCGATACATAACC
Found at i:93184 original size:13 final size:13
Alignment explanation
Indices: 93166--93191 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
93156 TACACACAAG
93166 ATGTATCGATACA
1 ATGTATCGATACA
93179 ATGTATCGATACA
1 ATGTATCGATACA
93192 TCCCAAAATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:95709 original size:79 final size:79
Alignment explanation
Indices: 95580--96409 Score: 943
Period size: 79 Copynumber: 10.5 Consensus size: 79
95570 CTTAGTATAC
* * * *
95580 GGGGTTGGAGTACCCCCGATGGTGAAAATTTTGATATTTTGGAAGTAAAAATGGGGTTGGAGTAT
1 GGGGTTGGAGTATCCCCGATGGTGAAAA-ATCGATATTTTGGAAATAAAAATGGGGTTGGAGTAT
* * *
95645 CCCTTTGGAAATGAT
65 CCCCTCGAAAATGAT
* * * * *
95660 GGGGCTGGAGTATCTCCAATGGTGAAAAATCAATATTTTGGAAATAAAAA-GGGGTTTGAGTATC
1 GGGGTTGGAGTATCCCCGATGGTGAAAAATCGATATTTTGGAAATAAAAATGGGGTTGGAGTATC
*
95724 CCCTCGGAAATGAT
66 CCCTCGAAAATGAT
** * * *
95738 GGGG-TGGAGTATCCCTAATGGTGAAAAATTTGATATTTAGGAAATAAAAACGGGG-TGGAGTAT
1 GGGGTTGGAGTATCCCCGATGGTGAAAAA-TCGATATTTTGGAAATAAAAATGGGGTTGGAGTAT
95801 CCCCTCGAAAATGAT
65 CCCCTCGAAAATGAT
* *** * * * *
95816 GGGGTTGAAGTATCTTTGATGGTGAAAAATTGATATTTTAGAAATAAAAACGGGGTTAGAGTAT-
1 GGGGTTGGAGTATCCCCGATGGTGAAAAATCGATATTTTGGAAATAAAAATGGGGTTGGAGTATC
*
95880 CTCTCGAAAATGAT
66 CCCTCGAAAATGAT
** ** * * ** **
95894 AAGGTTGGAGTATCCCCGATAATGATAAATCTATATTTTGGAAAGGAAAACAGGGTTGGAGTATC
1 GGGGTTGGAGTATCCCCGATGGTGAAAAATCGATATTTTGGAAATAAAAATGGGGTTGGAGTATC
95959 CCCTTC-AAAATGAT
66 CCC-TCGAAAATGAT
** * *
95973 GGAATTAGAGTATCCCCGATGGTGAAAAATCGATATTTTGGAAATGAAAATGGGGTTGGAGTATC
1 GGGGTTGGAGTATCCCCGATGGTGAAAAATCGATATTTTGGAAATAAAAATGGGGTTGGAGTATC
96038 CCCTC-AGAAATGAT
66 CCCTCGA-AAATGAT
* * * * *
96052 GGGGTTGGAGTATCCCCGATGGTGCAAAATCGATGTTTTGGAAATAAAAATGAGGTTGAAGTATT
1 GGGGTTGGAGTATCCCCGATGGTGAAAAATCGATATTTTGGAAATAAAAATGGGGTTGGAGTATC
* * *
96117 CCTTCAAAAACGAT
66 CCCTCGAAAATGAT
* * * *
96131 GGGGTTGGAGTATCCCCGATGGTGAAAAATCAATGTTTTGGAAATAAAAACGGGGTTAGAGTATC
1 GGGGTTGGAGTATCCCCGATGGTGAAAAATCGATATTTTGGAAATAAAAATGGGGTTGGAGTATC
* *
96196 TCCTCGAAAACGAT
66 CCCTCGAAAATGAT
* * *
96210 GGGGTTGGAGTATCCCCAATGATGAAAAATCGATAATTTTGGAAATAAAAATGGGGTTAGAGTAT
1 GGGGTTGGAGTATCCCCGATGGTGAAAAATCGAT-ATTTTGGAAATAAAAATGGGGTTGGAGTAT
*
96275 CCCCTCAAAAATGAT
65 CCCCTCGAAAATGAT
* ** * *
96290 GGGGTTAGAGTATCCTTGATGGTGGAAAATCGATAATTTTGGAAATAAAAATGGGGTTAGAGTAT
1 GGGGTTGGAGTATCCCCGATGGTGAAAAATCGAT-ATTTTGGAAATAAAAATGGGGTTGGAGTAT
*
96355 CCCCTCGGAAATGAT
65 CCCCTCGAAAATGAT
* ** *
96370 GGGGTTGGAGTATCTCTAATGGTGAAAAATCGATAATTTG
1 GGGGTTGGAGTATCCCCGATGGTGAAAAATCGATATTTTG
96410 TTTTATGAAG
Statistics
Matches: 643, Mismatches: 98, Indels: 19
0.85 0.13 0.03
Matches are distributed among these distances:
77 22 0.03
78 160 0.25
79 293 0.46
80 168 0.26
ACGTcount: A:0.33, C:0.11, G:0.27, T:0.28
Consensus pattern (79 bp):
GGGGTTGGAGTATCCCCGATGGTGAAAAATCGATATTTTGGAAATAAAAATGGGGTTGGAGTATC
CCCTCGAAAATGAT
Found at i:95899 original size:27 final size:26
Alignment explanation
Indices: 95869--95921 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
95859 ATAAAAACGG
*
95869 GGTTAGAGTATCTCTCGAAAATGATAA
1 GGTTAGAGTATC-CCCGAAAATGATAA
* *
95896 GGTTGGAGTATCCCCGATAATGATAA
1 GGTTAGAGTATCCCCGAAAATGATAA
95922 ATCTATATTT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
26 12 0.52
27 11 0.48
ACGTcount: A:0.34, C:0.13, G:0.25, T:0.28
Consensus pattern (26 bp):
GGTTAGAGTATCCCCGAAAATGATAA
Found at i:103205 original size:78 final size:78
Alignment explanation
Indices: 103029--103426 Score: 548
Period size: 78 Copynumber: 5.1 Consensus size: 78
103019 ATTCATGTTT
* * * ** *
103029 TTATTTCCAAGGGGATACTCCAACCCCGGTTTTATTTTCAAAATATCAATTTTTCACAATTAGAG
1 TTATTTCCGAGGGGATACTCCAACCCCGGTTTTATTTTCAAAACACCAA-TTTTCACAATCGGGG
103094 ATACTCCAA-CCTCG
65 ATACTCCAACCCT-G
* * *
103108 TTATTTTCGAGAGGATACTCCAACCCCGATTTTATTTTCAAAACACCAATTTTCACAATCGGGGA
1 TTATTTCCGAGGGGATACTCCAACCCCGGTTTTATTTTCAAAACACCAATTTTCACAATCGGGGA
103173 TACTCCAACCCTG
66 TACTCCAACCCTG
103186 TTATTTCCGAGGGGATACTCCAACCCCGGTTTTATTTTCAAAACACCAATTTTTCACAATC-GGG
1 TTATTTCCGAGGGGATACTCCAACCCCGGTTTTATTTTCAAAACACCAA-TTTTCACAATCGGGG
*
103250 ATACTCCAACCCCG
65 ATACTCCAACCCTG
* * *
103264 TTATTTTCGAGGGGATACTCCAACCTCGGTTTTATTTTCAAAACACCAATTTTCACAATCGAGGA
1 TTATTTCCGAGGGGATACTCCAACCCCGGTTTTATTTTCAAAACACCAATTTTCACAATCGGGGA
*
103329 TACTCTAACCCTG
66 TACTCCAACCCTG
* * * * * * *
103342 TTATTTCCGAGGGGATACTCCAACCCCGATTTTATTTCCAAGACATCGATTTTCCACCATTGGGG
1 TTATTTCCGAGGGGATACTCCAACCCCGGTTTTATTTTCAAAACACCAATTTT-CACAATCGGGG
*
103407 ATACTCCAACCCCG
65 ATACTCCAACCCTG
103421 TTATTT
1 TTATTT
103427 TTAAAGGGGT
Statistics
Matches: 285, Mismatches: 30, Indels: 8
0.88 0.09 0.02
Matches are distributed among these distances:
77 11 0.04
78 191 0.67
79 83 0.29
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.32
Consensus pattern (78 bp):
TTATTTCCGAGGGGATACTCCAACCCCGGTTTTATTTTCAAAACACCAATTTTCACAATCGGGGA
TACTCCAACCCTG
Found at i:103314 original size:156 final size:156
Alignment explanation
Indices: 103029--103427 Score: 618
Period size: 156 Copynumber: 2.5 Consensus size: 156
103019 ATTCATGTTT
* * *
103029 TTATTTCCAAGGGGATACTCCAACCCCGGTTTTATTTTCAAAATATCAATTTTTCACAATTAGAG
1 TTATTTCCGAGGGGATACTCCAACCCCGGTTTTATTTTCAAAACATCAATTTTTCACAA-TAGGG
*
103094 ATACTCCAACCTCGTTATTTTCGAGAGGATACTCCAACCCCGATTTTATTTTCAAAACACCAATT
65 ATACTCCAACCCCGTTATTTTCGAGAGGATACTCCAACCCCGATTTTATTTTCAAAACACCAATT
*
103159 TTCACAATCGGGGATACTCCAACCCTG
130 TTCACAATCGAGGATACTCCAACCCTG
* *
103186 TTATTTCCGAGGGGATACTCCAACCCCGGTTTTATTTTCAAAACACCAATTTTTCACAATCGGGA
1 TTATTTCCGAGGGGATACTCCAACCCCGGTTTTATTTTCAAAACATCAATTTTTCACAATAGGGA
* * *
103251 TACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCTCGGTTTTATTTTCAAAACACCAATTT
66 TACTCCAACCCCGTTATTTTCGAGAGGATACTCCAACCCCGATTTTATTTTCAAAACACCAATTT
*
103316 TCACAATCGAGGATACTCTAACCCTG
131 TCACAATCGAGGATACTCCAACCCTG
* * * * * * *
103342 TTATTTCCGAGGGGATACTCCAACCCCGATTTTATTTCCAAGACATCGATTTTCCACCATTGGGG
1 TTATTTCCGAGGGGATACTCCAACCCCGGTTTTATTTTCAAAACATCAATTTTTCA-CAATAGGG
103407 ATACTCCAACCCCGTTATTTT
65 ATACTCCAACCCCGTTATTTT
103428 TAAAGGGGTA
Statistics
Matches: 222, Mismatches: 19, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
156 139 0.63
157 83 0.37
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.32
Consensus pattern (156 bp):
TTATTTCCGAGGGGATACTCCAACCCCGGTTTTATTTTCAAAACATCAATTTTTCACAATAGGGA
TACTCCAACCCCGTTATTTTCGAGAGGATACTCCAACCCCGATTTTATTTTCAAAACACCAATTT
TCACAATCGAGGATACTCCAACCCTG
Found at i:108322 original size:20 final size:20
Alignment explanation
Indices: 108297--108351 Score: 101
Period size: 20 Copynumber: 2.8 Consensus size: 20
108287 ATTTGCCTAC
108297 ATGTATCGATACATTGAATA
1 ATGTATCGATACATTGAATA
*
108317 ATGTATCGATACATTGAGTA
1 ATGTATCGATACATTGAATA
108337 ATGTATCGATACATT
1 ATGTATCGATACATT
108352 TCCTTGGCAG
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.36, C:0.11, G:0.16, T:0.36
Consensus pattern (20 bp):
ATGTATCGATACATTGAATA
Found at i:108414 original size:32 final size:32
Alignment explanation
Indices: 108373--108443 Score: 124
Period size: 32 Copynumber: 2.2 Consensus size: 32
108363 AGCTTCGTAG
*
108373 CGATACATTGTATCGATACAACACTTATGTTT
1 CGATACATTGTATCGATACAACACTTATGTAT
*
108405 CGATACATTGTATCGATACAATACTTATGTAT
1 CGATACATTGTATCGATACAACACTTATGTAT
108437 CGATACA
1 CGATACA
108444 GTTACTGTTT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
32 37 1.00
ACGTcount: A:0.34, C:0.18, G:0.13, T:0.35
Consensus pattern (32 bp):
CGATACATTGTATCGATACAACACTTATGTAT
Found at i:108437 original size:19 final size:19
Alignment explanation
Indices: 108381--108465 Score: 74
Period size: 19 Copynumber: 4.7 Consensus size: 19
108371 AGCGATACAT
*
108381 TGTATCGATACAACACTTA
1 TGTATCGATACAATACTTA
*
108400 TGTTTCGATAC---A--T-
1 TGTATCGATACAATACTTA
108413 TGTATCGATACAATACTTA
1 TGTATCGATACAATACTTA
* *
108432 TGTATCGATACAGTTACTGTT
1 TGTATCGATACA-ATACT-TA
108453 TGTATCGATACAA
1 TGTATCGATACAA
108466 ATTGTTGAAA
Statistics
Matches: 53, Mismatches: 5, Indels: 15
0.73 0.07 0.21
Matches are distributed among these distances:
13 10 0.19
14 1 0.02
16 2 0.04
18 1 0.02
19 22 0.42
20 4 0.08
21 13 0.25
ACGTcount: A:0.32, C:0.16, G:0.14, T:0.38
Consensus pattern (19 bp):
TGTATCGATACAATACTTA
Found at i:108458 original size:21 final size:19
Alignment explanation
Indices: 108412--108465 Score: 72
Period size: 21 Copynumber: 2.7 Consensus size: 19
108402 TTTCGATACA
108412 TTGTATCGATACAATACTT
1 TTGTATCGATACAATACTT
* *
108431 ATGTATCGATACAGTTACTGT
1 TTGTATCGATACA-ATACT-T
108452 TTGTATCGATACAA
1 TTGTATCGATACAA
108466 ATTGTTGAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
19 12 0.41
20 4 0.14
21 13 0.45
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.39
Consensus pattern (19 bp):
TTGTATCGATACAATACTT
Found at i:119367 original size:11 final size:11
Alignment explanation
Indices: 119351--119413 Score: 69
Period size: 11 Copynumber: 6.0 Consensus size: 11
119341 TCCTTTTTCT
119351 AAACAAAAAAA
1 AAACAAAAAAA
*
119362 AAAC--AACAA
1 AAACAAAAAAA
119371 AAACAAAAAAA
1 AAACAAAAAAA
* *
119382 CAACAAAAAAC
1 AAACAAAAAAA
119393 AAA-AAAAAAA
1 AAACAAAAAAA
*
119403 CAACAAAAAAA
1 AAACAAAAAAA
119414 GAGAAAAGAG
Statistics
Matches: 42, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
9 8 0.19
10 8 0.19
11 26 0.62
ACGTcount: A:0.86, C:0.14, G:0.00, T:0.00
Consensus pattern (11 bp):
AAACAAAAAAA
Found at i:119371 original size:14 final size:13
Alignment explanation
Indices: 119351--119413 Score: 69
Period size: 14 Copynumber: 4.8 Consensus size: 13
119341 TCCTTTTTCT
119351 AAACAAAAAAAAA
1 AAACAAAAAAAAA
119364 ACAACAAAAACAAAA
1 A-AACAAAAA-AAAA
*
119379 AAAC---AACAAA
1 AAACAAAAAAAAA
119389 AAACAAAAAAAAA
1 AAACAAAAAAAAA
119402 ACAACAAAAAAA
1 A-AACAAAAAAA
119414 GAGAAAAGAG
Statistics
Matches: 42, Mismatches: 2, Indels: 11
0.76 0.04 0.20
Matches are distributed among these distances:
10 7 0.17
11 2 0.05
13 7 0.17
14 21 0.50
15 5 0.12
ACGTcount: A:0.86, C:0.14, G:0.00, T:0.00
Consensus pattern (13 bp):
AAACAAAAAAAAA
Found at i:119380 original size:17 final size:17
Alignment explanation
Indices: 119358--119405 Score: 78
Period size: 18 Copynumber: 2.8 Consensus size: 17
119348 TCTAAACAAA
119358 AAAAAAACAACAAAAAC
1 AAAAAAACAACAAAAAC
119375 AAAAAAACAACAAAAAAC
1 AAAAAAACAAC-AAAAAC
*
119393 AAAAAAAAAACAA
1 AAAAAAACAACAA
119406 CAAAAAAAGA
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
17 13 0.45
18 16 0.55
ACGTcount: A:0.85, C:0.15, G:0.00, T:0.00
Consensus pattern (17 bp):
AAAAAAACAACAAAAAC
Found at i:119380 original size:18 final size:19
Alignment explanation
Indices: 119351--119411 Score: 81
Period size: 17 Copynumber: 3.2 Consensus size: 19
119341 TCCTTTTTCT
119351 AAACAAAAAAAAAACAACAA
1 AAAC-AAAAAAAAACAACAA
119371 AAAC--AAAAAAACAACAAA
1 AAACAAAAAAAAACAAC-AA
119389 AAACAAAAAAAAAACAACAA
1 AAAC-AAAAAAAAACAACAA
119409 AAA
1 AAA
119412 AAGAGAAAAG
Statistics
Matches: 37, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
17 11 0.30
18 6 0.16
20 9 0.24
21 11 0.30
ACGTcount: A:0.85, C:0.15, G:0.00, T:0.00
Consensus pattern (19 bp):
AAACAAAAAAAAACAACAA
Found at i:119420 original size:18 final size:16
Alignment explanation
Indices: 119355--119413 Score: 73
Period size: 18 Copynumber: 3.4 Consensus size: 16
119345 TTTTCTAAAC
119355 AAAAAAAAAACAACAA
1 AAAAAAAAAACAACAA
119371 AAACAAAAAAACAACAAA
1 AAA-AAAAAAACAAC-AA
*
119389 AAACAAAAAAAAAACAA
1 AAA-AAAAAAACAACAA
119406 CAAAAAAA
1 -AAAAAAA
119414 GAGAAAAGAG
Statistics
Matches: 39, Mismatches: 1, Indels: 5
0.87 0.02 0.11
Matches are distributed among these distances:
16 3 0.08
17 17 0.44
18 19 0.49
ACGTcount: A:0.86, C:0.14, G:0.00, T:0.00
Consensus pattern (16 bp):
AAAAAAAAAACAACAA
Found at i:119420 original size:21 final size:20
Alignment explanation
Indices: 119355--119413 Score: 84
Period size: 21 Copynumber: 3.0 Consensus size: 20
119345 TTTTCTAAAC
*
119355 AAAAAAAA-AACAACAAAAA
1 AAAAAAAACAACAAAAAAAA
*
119374 CAAAAAAACAACAAAAAACAA
1 AAAAAAAACAACAAAAAA-AA
119395 AAAAAAAACAACAAAAAAA
1 AAAAAAAACAACAAAAAAA
119414 GAGAAAAGAG
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
19 7 0.20
20 9 0.26
21 19 0.54
ACGTcount: A:0.86, C:0.14, G:0.00, T:0.00
Consensus pattern (20 bp):
AAAAAAAACAACAAAAAAAA
Found at i:119427 original size:16 final size:16
Alignment explanation
Indices: 119408--119438 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
119398 AAAAACAACA
119408 AAAAAAGAGAAAAGAG
1 AAAAAAGAGAAAAGAG
119424 AAAAAAGAGAAAAGA
1 AAAAAAGAGAAAAGA
119439 AAAGAACCTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (16 bp):
AAAAAAGAGAAAAGAG
Found at i:120544 original size:61 final size:61
Alignment explanation
Indices: 120413--121112 Score: 875
Period size: 61 Copynumber: 11.6 Consensus size: 61
120403 AACCTTTTAT
* * * * *
120413 CCTTTCAGTCCTTAAAAAGCAGGACGCCCTTTCCTTTTCAAAGCCCACATAAGTTGGTGGCA
1 CCTTTCAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTT-AAAGCCCACACAAGTTGGTGGCA
* *
120475 CCTTTCAGTCCTCAAAGAGCAGGATGCCTTCTCCTTTTAAAGCTCACACAAGTTGGTGGCA
1 CCTTTCAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCA
120536 CCTTTCAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCA
1 CCTTTCAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCA
* * * * *
120597 -CTTGTCAGTCCTTAAAGAGCAGGATGCCTTTTCCTTTCAAAGCCTACACAATTTAGTGGCA
1 CCTT-TCAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCA
*
120658 CC-TTCTAGTCCTCAAAGAGCAGGATG--TTTTCCTTTCAAAGCCCACACAAGTTGGTGGCA
1 CCTTTC-AGTCCTCAAAGAGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCA
* ** * *
120717 CCTTCCAGTCCTCAAAGAGCAGGGCGCCTTCTCCTTTTAAAGCCTACACAAGTTGGTGGCA
1 CCTTTCAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCA
* * * * *
120778 CTTTTCAGTCCTCAAAAAGCAGGACGCCTTTTCCTTTTAAAACCCACACAAGTTGGTGACA
1 CCTTTCAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCA
* * * ** * *
120839 CCTGTCAGTCTTCAAAGAGCATGACACCTTTTCCTTTCAAAGCCTACACAAGTTGGTGGCA
1 CCTTTCAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCA
* * * *
120900 CC-TTCTAGTCCTCAAAGAGTAGGA--CGTTTT-ATTTTCAAAGCCCATACAAGTTGGTGGCA
1 CCTTTC-AGTCCTCAAAGAGCAGGATGCCTTTTCCTTTT-AAAGCCCACACAAGTTGGTGGCA
* * *
120959 CCTTCCAGTCCTCAAAAAGCAGGATG-C-TTTCCTTTTAAAGCCCACACAAGTTGATGGCA
1 CCTTTCAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCA
* * * * *
121018 CCTGTCAGTCCTTAAAGAGCAGGATTCATTTTCCTTTCAAAGCCCACACAAGTTGGTGGCA
1 CCTTTCAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCA
* *
121079 CCTTCCAGTCCTTAAAGAGCAGGATG--TTTTCCTT
1 CCTTTCAGTCCTCAAAGAGCAGGATGCCTTTTCCTT
121113 GGTGGCACAT
Statistics
Matches: 555, Mismatches: 69, Indels: 31
0.85 0.11 0.05
Matches are distributed among these distances:
58 3 0.01
59 147 0.26
60 15 0.03
61 356 0.64
62 34 0.06
ACGTcount: A:0.26, C:0.27, G:0.19, T:0.28
Consensus pattern (61 bp):
CCTTTCAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCA
Found at i:120632 original size:122 final size:122
Alignment explanation
Indices: 120413--121112 Score: 888
Period size: 120 Copynumber: 5.8 Consensus size: 122
120403 AACCTTTTAT
* * * * *
120413 CCTTTCAGTCCTTAAAAAGCAGGACGCCCTTTCCTTTTCAAAGCCCACATAAGTTGGTGGCACCT
1 CCTTTCAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTT-AAAGCCCACACAAGTTGGTGGCACCT
* *
120478 TTCAGTCCTCAAAGAGCAGGATGCCTTCTCCTTTTAAAG-CTCACACAAGTTGGTGGCA
65 TCCAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTTAAAGCCT-ACACAAGTTGGTGGCA
120536 CCTTTCAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCA-CTT
1 CCTTTCAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTT
* * * * *
120600 GTCAGTCCTTAAAGAGCAGGATGCCTTTTCCTTTCAAAGCCTACACAATTTAGTGGCA
66 -CCAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTTAAAGCCTACACAAGTTGGTGGCA
*
120658 CC-TTCTAGTCCTCAAAGAGCAGGATG--TTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACCT
1 CCTTTC-AGTCCTCAAAGAGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCT
** *
120720 TCCAGTCCTCAAAGAGCAGGGCGCCTTCTCCTTTTAAAGCCTACACAAGTTGGTGGCA
65 TCCAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTTAAAGCCTACACAAGTTGGTGGCA
* * * * *
120778 CTTTTCAGTCCTCAAAAAGCAGGACGCCTTTTCCTTTTAAAACCCACACAAGTTGGTGACACCTG
1 CCTTTCAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCT-
* * ** *
120843 T-CAGTCTTCAAAGAGCATGACACCTTTTCCTTTCAAAGCCTACACAAGTTGGTGGCA
65 TCCAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTTAAAGCCTACACAAGTTGGTGGCA
* * * *
120900 CC-TTCTAGTCCTCAAAGAGTAGGA--CGTTTT-ATTTTCAAAGCCCATACAAGTTGGTGGCACC
1 CCTTTC-AGTCCTCAAAGAGCAGGATGCCTTTTCCTTTT-AAAGCCCACACAAGTTGGTGGCACC
* * *
120961 TTCCAGTCCTCAAAAAGCAGGATG-C-TTTCCTTTTAAAGCCCACACAAGTTGATGGCA
64 TTCCAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTTAAAGCCTACACAAGTTGGTGGCA
* * * * *
121018 CCTGTCAGTCCTTAAAGAGCAGGATTCATTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACCTT
1 CCTTTCAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTT
*
121083 CCAGTCCTTAAAGAGCAGGATG--TTTTCCTT
66 CCAGTCCTCAAAGAGCAGGATGCCTTTTCCTT
121113 GGTGGCACAT
Statistics
Matches: 505, Mismatches: 56, Indels: 35
0.85 0.09 0.06
Matches are distributed among these distances:
118 47 0.09
119 8 0.02
120 202 0.40
121 18 0.04
122 193 0.38
123 37 0.07
ACGTcount: A:0.26, C:0.27, G:0.19, T:0.28
Consensus pattern (122 bp):
CCTTTCAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTT
CCAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTTAAAGCCTACACAAGTTGGTGGCA
Found at i:120873 original size:242 final size:242
Alignment explanation
Indices: 120419--121102 Score: 1000
Period size: 242 Copynumber: 2.8 Consensus size: 242
120409 TTATCCTTTC
* * * * *
120419 AGTCCTTAAAAAGCAGGACGCCCTTTCCTTTTCAAAGCCCACATAAGTTGGTGGCACCTTTCAGT
1 AGTCCTCAAAGAGCAGGACG--TTTTCC-TTTCAAAGCCCACACAAGTTGGTGGCACCTTCCAGT
120484 CCTCAAAGAGCAGGATGCCTTCTCCTTTTAAAG-CTCACACAAGTTGGTGGCACCTTTCAGTCCT
63 CCTCAAAGAGCAGGATGCCTTCTCCTTTTAAAGCCT-ACACAAGTTGGTGGCACCTTTCAGTCCT
*
120548 CAAAGAGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTGTCAGTCCTTAAA
127 CAAAGAGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTGTCAGTCCTTAAA
** *
120613 GAGCAGGATGCCTTTTCCTTTCAAAGCCTACACAATTTAGTGGCACCTTCT
192 GAGCAGGACACCTTTTCCTTTCAAAGCCTACACAAGTTAGTGGCACCTTCT
*
120664 AGTCCTCAAAGAGCAGGATGTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTCCAGTCCT
1 AGTCCTCAAAGAGCAGGACGTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTCCAGTCCT
** *
120729 CAAAGAGCAGGGCGCCTTCTCCTTTTAAAGCCTACACAAGTTGGTGGCACTTTTCAGTCCTCAAA
66 CAAAGAGCAGGATGCCTTCTCCTTTTAAAGCCTACACAAGTTGGTGGCACCTTTCAGTCCTCAAA
* * * *
120794 AAGCAGGACGCCTTTTCCTTTTAAAACCCACACAAGTTGGTGACACCTGTCAGT-CTTCAAAGAG
131 GAGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTGTCAGTCCTT-AAAGAG
* *
120858 CATGACACCTTTTCCTTTCAAAGCCTACACAAGTTGGTGGCACCTTCT
195 CAGGACACCTTTTCCTTTCAAAGCCTACACAAGTTAGTGGCACCTTCT
* ** *
120906 AGTCCTCAAAGAGTAGGACGTTTTATTTTCAAAGCCCATACAAGTTGGTGGCACCTTCCAGTCCT
1 AGTCCTCAAAGAGCAGGACGTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTCCAGTCCT
* * * * *
120971 CAAAAAGCAGGATG-CTT-TCCTTTTAAAGCCCACACAAGTTGATGGCACCTGTCAGTCCTTAAA
66 CAAAGAGCAGGATGCCTTCTCCTTTTAAAGCCTACACAAGTTGGTGGCACCTTTCAGTCCTCAAA
* * *
121034 GAGCAGGATTCATTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACCT-TCCAGTCCTTAAAGAG
131 GAGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTGT-CAGTCCTTAAAGAG
121098 CAGGA
195 CAGGA
121103 TGTTTTCCTT
Statistics
Matches: 395, Mismatches: 40, Indels: 13
0.88 0.09 0.03
Matches are distributed among these distances:
239 1 0.00
240 96 0.24
241 9 0.02
242 265 0.67
243 7 0.02
245 17 0.04
ACGTcount: A:0.26, C:0.27, G:0.19, T:0.27
Consensus pattern (242 bp):
AGTCCTCAAAGAGCAGGACGTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTCCAGTCCT
CAAAGAGCAGGATGCCTTCTCCTTTTAAAGCCTACACAAGTTGGTGGCACCTTTCAGTCCTCAAA
GAGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTGTCAGTCCTTAAAGAGC
AGGACACCTTTTCCTTTCAAAGCCTACACAAGTTAGTGGCACCTTCT
Found at i:121115 original size:41 final size:41
Alignment explanation
Indices: 121070--121153 Score: 132
Period size: 41 Copynumber: 2.0 Consensus size: 41
121060 CCCACACAAG
* * *
121070 TTGGTGGCACCTTCCAGTCCTTAAAGAGCAGGATGTTTTCC
1 TTGGTGGCACATTCCAGTCCTCAAAGAGCAGGATGCTTTCC
*
121111 TTGGTGGCACATTCCAGTCCTCAAAGTGCAGGATGCTTTCC
1 TTGGTGGCACATTCCAGTCCTCAAAGAGCAGGATGCTTTCC
121152 TT
1 TT
121154 TCAAAGCCCA
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
41 39 1.00
ACGTcount: A:0.19, C:0.25, G:0.24, T:0.32
Consensus pattern (41 bp):
TTGGTGGCACATTCCAGTCCTCAAAGAGCAGGATGCTTTCC
Found at i:121189 original size:59 final size:59
Alignment explanation
Indices: 121111--121254 Score: 198
Period size: 59 Copynumber: 2.4 Consensus size: 59
121101 GATGTTTTCC
* * *
121111 TTGGTGGCACATTCCAGTCCTCAAAGTGCAGGATGCTTTCCTTTCAAAGCCCACACAAG
1 TTGGTGGCACCTTCTAGTCCTCAAAGAGCAGGATGCTTTCCTTTCAAAGCCCACACAAG
* * * *
121170 TTGGTGGCACCTTCTAGTCCTTAAAGAGCGGGATGTTTTCCTTTCAAAGCCCTCACAAG
1 TTGGTGGCACCTTCTAGTCCTCAAAGAGCAGGATGCTTTCCTTTCAAAGCCCACACAAG
* * *
121229 TTAGTGGCGCCTTCTAGTCCCCAAAG
1 TTGGTGGCACCTTCTAGTCCTCAAAG
121255 CGCATGACGC
Statistics
Matches: 74, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
59 74 1.00
ACGTcount: A:0.23, C:0.28, G:0.22, T:0.28
Consensus pattern (59 bp):
TTGGTGGCACCTTCTAGTCCTCAAAGAGCAGGATGCTTTCCTTTCAAAGCCCACACAAG
Found at i:121189 original size:100 final size:101
Alignment explanation
Indices: 121023--121212 Score: 319
Period size: 100 Copynumber: 1.9 Consensus size: 101
121013 TGGCACCTGT
* *
121023 CAGTCCTTAAAGAGCAGGATTCATTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTCCAGT
1 CAGTCCTCAAAGAGCAGGATGCA-TTTCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTCCAGT
121088 CCTTAAAGAGCAGGATGTTTTCCTTGGTGGCACATTC
65 CCTTAAAGAGCAGGATGTTTTCCTTGGTGGCACATTC
* *
121125 CAGTCCTCAAAGTGCAGGATGC-TTTCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTCTAGTC
1 CAGTCCTCAAAGAGCAGGATGCATTTCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTCCAGTC
*
121189 CTTAAAGAGCGGGATGTTTTCCTT
66 CTTAAAGAGCAGGATGTTTTCCTT
121213 TCAAAGCCCT
Statistics
Matches: 83, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
100 64 0.77
102 19 0.23
ACGTcount: A:0.24, C:0.26, G:0.21, T:0.29
Consensus pattern (101 bp):
CAGTCCTCAAAGAGCAGGATGCATTTCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTCCAGTC
CTTAAAGAGCAGGATGTTTTCCTTGGTGGCACATTC
Found at i:121434 original size:75 final size:77
Alignment explanation
Indices: 121280--121457 Score: 209
Period size: 75 Copynumber: 2.4 Consensus size: 77
121270 AATTTCCTTC
* * * * *
121280 TTTTCCTTTGTCCTCAAAGAGCAGGACGCATTTTATTTCTTTTTTTCCTTTGTCCTCGAAGAGTA
1 TTTTCCTTTGTCCTCAAAGAGCAGGACCCATTTCATTTCTTTGTTTCCTTTATCCTCGAAGAGCA
*
121345 GGATGTACTCCT
66 GGACGTACTCCT
* * * * *
121357 TTTTCTTTTTTCCTCAAGGAGCATGACCCATTTCA-TTC-TTGTTTCCTTTATCCTTGAAGAGCA
1 TTTTCCTTTGTCCTCAAAGAGCAGGACCCATTTCATTTCTTTGTTTCCTTTATCCTCGAAGAGCA
*
121420 GGACGTGCTCC-
66 GGACGTACTCCT
* *
121431 TTTTCATTTGTCCTTAAAGAGCAGGAC
1 TTTTCCTTTGTCCTCAAAGAGCAGGAC
121458 GCCCTGTCCT
Statistics
Matches: 84, Mismatches: 17, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
74 22 0.26
75 30 0.36
76 3 0.04
77 29 0.35
ACGTcount: A:0.19, C:0.23, G:0.17, T:0.41
Consensus pattern (77 bp):
TTTTCCTTTGTCCTCAAAGAGCAGGACCCATTTCATTTCTTTGTTTCCTTTATCCTCGAAGAGCA
GGACGTACTCCT
Found at i:122079 original size:13 final size:13
Alignment explanation
Indices: 122063--122092 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
122053 ATACATTGTT
*
122063 CATTGTATCGATA
1 CATTGAATCGATA
122076 CATTGAATCGATA
1 CATTGAATCGATA
122089 CATT
1 CATT
122093 CTGGGTTCTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.33, C:0.17, G:0.13, T:0.37
Consensus pattern (13 bp):
CATTGAATCGATA
Found at i:136464 original size:10 final size:10
Alignment explanation
Indices: 136449--136480 Score: 55
Period size: 10 Copynumber: 3.2 Consensus size: 10
136439 CCAATTCATA
136449 TTTTTTTTCT
1 TTTTTTTTCT
136459 TTTTTTTTCT
1 TTTTTTTTCT
*
136469 TTTTCTTTCT
1 TTTTTTTTCT
136479 TT
1 TT
136481 CTTCTTCATC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (10 bp):
TTTTTTTTCT
Found at i:136477 original size:20 final size:20
Alignment explanation
Indices: 136449--136503 Score: 67
Period size: 20 Copynumber: 2.8 Consensus size: 20
136439 CCAATTCATA
* *
136449 TTTTT-TTTCTTTTTTTTTC
1 TTTTTCTTTCTTTCTTCTTC
136468 TTTTTCTTTCTTTCTTCTTC
1 TTTTTCTTTCTTTCTTCTTC
* *
136488 ATCTTCTTTCTTTCTT
1 TTTTTCTTTCTTTCTT
136504 TCTTACTTAA
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
19 5 0.16
20 26 0.84
ACGTcount: A:0.02, C:0.20, G:0.00, T:0.78
Consensus pattern (20 bp):
TTTTTCTTTCTTTCTTCTTC
Found at i:137321 original size:11 final size:11
Alignment explanation
Indices: 137303--137336 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
137293 CAGGCCACTC
137303 AATTTTTTTTT
1 AATTTTTTTTT
*
137314 -CTTTTTTTTT
1 AATTTTTTTTT
137324 AATTTTTTTTT
1 AATTTTTTTTT
137335 AA
1 AA
137337 AAAAACGAGT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
10 9 0.45
11 11 0.55
ACGTcount: A:0.18, C:0.03, G:0.00, T:0.79
Consensus pattern (11 bp):
AATTTTTTTTT
Found at i:137860 original size:28 final size:28
Alignment explanation
Indices: 137818--139174 Score: 1178
Period size: 28 Copynumber: 48.4 Consensus size: 28
137808 CATTGGCTTG
* *
137818 TGTGGGTTTTAAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
*
137846 TGTGGGCTTTGAAAGGATGCCACTGACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* * *
137874 TATGGGCTTTGAAAAGAGTGCCACTGATT
1 TGTGGGCTTTG-AAAGGGTGCCACTGACT
* *
137903 TGTGGGCTTTGAAAAGAGTGCCACTGATT
1 TGTGGGCTTTG-AAAGGGTGCCACTGACT
137932 TGTGGGCTTTGAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* *
137960 TGTGGGCTTTGAAAAGAGTGCCATTGACT
1 TGTGGGCTTTG-AAAGGGTGCCACTGACT
137989 TGTGGGCTTTGAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* *
138017 TGTGGGCTTTGAAAAGAGTGCCACTGATT
1 TGTGGGCTTTG-AAAGGGTGCCACTGACT
* *
138046 TGTGGGCTTTGAAAAGAGTGCCACTGATT
1 TGTGGGCTTTG-AAAGGGTGCCACTGACT
138075 TGTGGGCTTTGAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* *
138103 TGTGGGCTTTGAAAAGAGTGCCATTGACT
1 TGTGGGCTTTG-AAAGGGTGCCACTGACT
138132 TGTGGGCTTTGAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* *
138160 TGTGGGCTTTGAAAAGAGTGCCACTGATT
1 TGTGGGCTTTG-AAAGGGTGCCACTGACT
* *
138189 TGTGGGCTTTCAAAGGATGCCACTGACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
** * * * *
138217 CATGGGCTTTAAAAGGATGCCATTGATT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* * *
138245 TGTGGACTTTGAAAGGTTGCCACTAACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
*
138273 TGTGGGCTTTGAAAAGAGTGCCACTGACT
1 TGTGGGCTTTG-AAAGGGTGCCACTGACT
* * *
138302 TGTGGGCTTTGAAAAGTTGCCACCGACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* * * *
138330 CGTGGGCTTTAAAAGGATGCCACTGATT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* * *
138358 TGTGGGCTTTGAAAGGCTGCCACTAACA
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* * * *
138386 CGTGGGCTTTAAAAGGATGCCACTGATT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
** * *
138414 TGTAAGCTTTGAAAGGTTGCCACTAACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
*
138442 TGTGGGCTTTGAAAAGAGTGCCACTGACT
1 TGTGGGCTTTG-AAAGGGTGCCACTGACT
* *
138471 TGTGGGCTTT-AAAAGTTGCCACTGACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* * * *
138498 CGTGGGCTTTAAAAGGATGCCACTGATT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
*
138526 TGTGGGCTTTGAAAGGTTGCCACT-ACCT
1 TGTGGGCTTTGAAAGGGTGCCACTGA-CT
*
138554 TGTGGGCTTTGAAAGGATGCCACTGACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* ** *
138582 CGTGGGCTTCAAAAGGATGCCACTGACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* *
138610 TGTGGGCTTTGAAAGGTTGCCACCGACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
** * * *
138638 CATGGGCTTTAAAAGGATGCCACTGATT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* *
138666 TGTGGGCTTTGAAAGGTTGCCACTAACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* *
138694 TATGGGCTTTGAAAAGAGTGCCACTGACT
1 TGTGGGCTTTG-AAAGGGTGCCACTGACT
138723 TGTGGGCTTTGAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* **
138751 TGCGGGCTTTGAAAAGAATGCCACTGAGC-
1 TGTGGGCTTTG-AAAGGGTGCCACTGA-CT
* * * *
138780 TATGGGCTTTGAAAGGATGCCACAGAGT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* * * * *
138808 TGTGTGGAC-TTAAAAAGATGCCACGGAGT
1 TGTG-GG-CTTTGAAAGGGTGCCACTGACT
* * * * **
138837 TGTGGAC-TTAAAAGGATGCCACAGTGT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* * * * *
138864 TGTGGACTTTAAAAGAGTGCCACGGAGT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* ** * *
138892 TGTGGAC-TCAAAAAGGTGCCA-TGGAGT
1 TGTGGGCTTTGAAAGGGTGCCACT-GACT
* * * * * **
138919 TATGGACTTTAAAAGGATGCCACAGTGT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* * * * *
138947 TGTGGAC-TTAAAAGGGTACCACGGAGT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* * * * * *
138974 GGTGGACTTTAAAAGAGTGCCACAGAGT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* * * *
139002 TGTGGAC-TTAAAAGGGTGCCACGGAGT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* *
139029 TGTGGACTTT-AAAGGGTGCCAC-GGCGT
1 TGTGGGCTTTGAAAGGGTGCCACTGAC-T
* * * *
139056 TGTGGAC-TTAAAAGGGTGCCACGGAGT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* * * *
139083 TGTGGAC-TTAAAAGGGTGCCACGGATT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* * *
139110 TGTGGAC-TT-ACAAGGGTGCCACGGAGT
1 TGTGGGCTTTGA-AAGGGTGCCACTGACT
* * * * *
139137 TGTGGACTTTAAAAGAGTGCCACGGAGT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
*
139165 TGTGGACTTT
1 TGTGGGCTTT
139175 AAAAAGAAAT
Statistics
Matches: 1135, Mismatches: 166, Indels: 56
0.84 0.12 0.04
Matches are distributed among these distances:
26 4 0.00
27 207 0.18
28 617 0.54
29 305 0.27
30 2 0.00
ACGTcount: A:0.24, C:0.17, G:0.31, T:0.28
Consensus pattern (28 bp):
TGTGGGCTTTGAAAGGGTGCCACTGACT
Found at i:138260 original size:56 final size:56
Alignment explanation
Indices: 137818--139207 Score: 1179
Period size: 57 Copynumber: 24.7 Consensus size: 56
137808 CATTGGCTTG
* *
137818 TGTGGGTTTTAAAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
1 TGTGGGCTTTAAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * *
137874 TATGGGCTTTGAAAA-GAGTGCCACTGATTTGTGGGCTTTGAAAAGAGTGCCACTGATT
1 TGTGGGCTTT-AAAAGGA-TGCCACTGACTTGTGGGCTTTGAAAGGA-TGCCACTGACT
* * * *
137932 TGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCATTGACT
1 TGTGGGCTTTAAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGA-TGCCACTGACT
* * * *
137989 TGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGATT
1 TGTGGGCTTTAAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGA-TGCCACTGACT
* *
138046 TGTGGGCTTTGAAAA-GAGTGCCACTGATTTGTGGGCTTTGAAAGGGTGCCACTGACT
1 TGTGGGCTTT-AAAAGGA-TGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
* *
138103 TGTGGGCTTTGAAAA-GAGTGCCATTGACTTGTGGGCTTTGAAAGGGTGCCACTGACT
1 TGTGGGCTTT-AAAAGGA-TGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
* *
138160 TGTGGGCTTTGAAAA-GAGTGCCACTGATTTGTGGGCTTTCAAAGGATGCCACTGACT
1 TGTGGGCTTT-AAAAGGA-TGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
** * * * * *
138217 CATGGGCTTTAAAAGGATGCCATTGATTTGTGGACTTTGAAAGGTTGCCACTAACT
1 TGTGGGCTTTAAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * *
138273 TGTGGGCTTTGAAAA-GAGTGCCACTGACTTGTGGGCTTTGAAAAGTTGCCACCGACT
1 TGTGGGCTTT-AAAAGGA-TGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * * *
138330 CGTGGGCTTTAAAAGGATGCCACTGATTTGTGGGCTTTGAAAGGCTGCCACTAACA
1 TGTGGGCTTTAAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * ** * *
138386 CGTGGGCTTTAAAAGGATGCCACTGATTTGTAAGCTTTGAAAGGTTGCCACTAACT
1 TGTGGGCTTTAAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
* *
138442 TGTGGGCTTTGAAAA-GAGTGCCACTGACTTGTGGGCTTT-AAAAGTTGCCACTGACT
1 TGTGGGCTTT-AAAAGGA-TGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * *
138498 CGTGGGCTTTAAAAGGATGCCACTGATTTGTGGGCTTTGAAAGGTTGCCACT-ACCT
1 TGTGGGCTTTAAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGA-CT
* * **
138554 TGTGGGCTTTGAAAGGATGCCACTGACTCGTGGGCTTCAAAAGGATGCCACTGACT
1 TGTGGGCTTTAAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * ** * *
138610 TGTGGGCTTTGAAAGGTTGCCACCGACTCATGGGCTTTAAAAGGATGCCACTGATT
1 TGTGGGCTTTAAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * * *
138666 TGTGGGCTTTGAAAGGTTGCCACTAACTTATGGGCTTTGAAAAGAGTGCCACTGACT
1 TGTGGGCTTTAAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGA-TGCCACTGACT
* * * *
138723 TGTGGGCTTTGAAAGGGTGCCACTGACTTGCGGGCTTTGAAAAGAATGCCACTGAGC-
1 TGTGGGCTTTAAAAGGATGCCACTGACTTGTGGGCTTTG-AAAGGATGCCACTGA-CT
* * * * * * * *
138780 TATGGGCTTTGAAAGGATGCCACAGAGTTGTGTGGAC-TTAAAAAGATGCCACGGAGT
1 TGTGGGCTTTAAAAGGATGCCACTGACTTGTG-GG-CTTTGAAAGGATGCCACTGACT
* * ** * * * *
138837 TGTGGAC-TTAAAAGGATGCCACAGTGTTGTGGACTTT-AAAAGAGTGCCACGGAGT
1 TGTGGGCTTTAAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGA-TGCCACTGACT
* ** * * * * * **
138892 TGTGGACTCAAAAAGG-TGCCA-TGGAGTTATGGACTTTAAAAGGATGCCACAGTGT
1 TGTGGGCTTTAAAAGGATGCCACT-GACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * * * * * * * *
138947 TGTGGAC-TTAAAAGGGTACCACGGAGTGGTGGACTTT-AAAAGAGTGCCACAGAGT
1 TGTGGGCTTTAAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGA-TGCCACTGACT
* * * * * * *
139002 TGTGGAC-TTAAAAGGGTGCCACGGAGTTGTGGACTTT-AAAGGGTGCCAC-GGCGT
1 TGTGGGCTTTAAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGAC-T
* * * * * * * * *
139056 TGTGGAC-TTAAAAGGGTGCCACGGAGTTGTGGAC-TTAAAAGGGTGCCACGGATT
1 TGTGGGCTTTAAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * * * * * * *
139110 TGTGGAC-TTACAAGGGTGCCACGGAGTTGTGGACTTT-AAAAGAGTGCCACGGAGT
1 TGTGGGCTTTAAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGA-TGCCACTGACT
* * * * *
139165 TGTGGACTTTAAAAAGAAATGCCACTGAATCGTGGACTTTGAA
1 TGTGGGCTTT-AAAAG-GATGCCACTGACTTGTGGGCTTTGAA
139208 GAGGTCACAG
Statistics
Matches: 1161, Mismatches: 134, Indels: 75
0.85 0.10 0.05
Matches are distributed among these distances:
53 3 0.00
54 109 0.09
55 164 0.14
56 370 0.32
57 437 0.38
58 75 0.06
59 3 0.00
ACGTcount: A:0.25, C:0.17, G:0.31, T:0.28
Consensus pattern (56 bp):
TGTGGGCTTTAAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
Found at i:138848 original size:27 final size:27
Alignment explanation
Indices: 138791--139178 Score: 451
Period size: 27 Copynumber: 14.1 Consensus size: 27
138781 ATGGGCTTTG
*
138791 AAAGGATGCCACAGAGTTGTGTGGACTTA
1 AAAGGATGCCACGGAG-T-TGTGGACTTA
*
138820 AAAAGATGCCACGGAGTTGTGGACTTA
1 AAAGGATGCCACGGAGTTGTGGACTTA
* *
138847 AAAGGATGCCACAGTGTTGTGGACTTTA
1 AAAGGATGCCACGGAGTTGTGGAC-TTA
*
138875 AAA-GAGTGCCACGGAGTTGTGGACTCAA
1 AAAGGA-TGCCACGGAGTTGTGGACT-TA
* *
138903 AAAGG-TGCCATGGAGTTATGGACTTTA
1 AAAGGATGCCACGGAGTTGTGGAC-TTA
* *
138930 AAAGGATGCCACAGTGTTGTGGACTTA
1 AAAGGATGCCACGGAGTTGTGGACTTA
* * *
138957 AAAGGGTACCACGGAGTGGTGGACTTTA
1 AAAGGATGCCACGGAGTTGTGGAC-TTA
*
138985 AAA-GAGTGCCACAGAGTTGTGGACTTA
1 AAAGGA-TGCCACGGAGTTGTGGACTTA
* *
139012 AAAGGGTGCCACGGAGTTGTGGACTTT
1 AAAGGATGCCACGGAGTTGTGGACTTA
* *
139039 AAAGGGTGCCACGGCGTTGTGGACTTA
1 AAAGGATGCCACGGAGTTGTGGACTTA
*
139066 AAAGGGTGCCACGGAGTTGTGGACTTA
1 AAAGGATGCCACGGAGTTGTGGACTTA
* *
139093 AAAGGGTGCCACGGATTTGTGGACTTA
1 AAAGGATGCCACGGAGTTGTGGACTTA
* *
139120 CAAGGGTGCCACGGAGTTGTGGACTTTA
1 AAAGGATGCCACGGAGTTGTGGAC-TTA
139148 AAA-GAGTGCCACGGAGTTGTGGACTTTA
1 AAAGGA-TGCCACGGAGTTGTGGAC-TTA
139176 AAA
1 AAA
139179 AGAAATGCCA
Statistics
Matches: 313, Mismatches: 35, Indels: 23
0.84 0.09 0.06
Matches are distributed among these distances:
27 204 0.65
28 94 0.30
29 15 0.05
ACGTcount: A:0.29, C:0.15, G:0.32, T:0.24
Consensus pattern (27 bp):
AAAGGATGCCACGGAGTTGTGGACTTA
Found at i:138925 original size:82 final size:81
Alignment explanation
Indices: 138791--139178 Score: 508
Period size: 82 Copynumber: 4.7 Consensus size: 81
138781 ATGGGCTTTG
* * *
138791 AAAGGATGCCACAGAGTTGTGTGGACTTAAAAAGATGCCACGGAGTTGTGGACTTAAAAGGATGC
1 AAAGGGTGCCACGGAG-T-TGTGGACTTAAAAAGGTGCCACGGAGTTGTGGACTTAAAAGGATGC
138856 CACAGTGTTGTGGACTTTA
64 CACAGTGTTGTGGAC-TTA
* * * *
138875 AAAGAGTGCCACGGAGTTGTGGACTCAAAAAGGTGCCATGGAGTTATGGACTTTAAAAGGATGCC
1 AAAGGGTGCCACGGAGTTGTGGACTTAAAAAGGTGCCACGGAGTTGTGGAC-TTAAAAGGATGCC
138940 ACAGTGTTGTGGACTTA
65 ACAGTGTTGTGGACTTA
* * * * *
138957 AAAGGGTACCACGGAGTGGTGGACTTTAAAAGAGTGCCACAGAGTTGTGGACTTAAAAGGGTGCC
1 AAAGGGTGCCACGGAGTTGTGGACTTAAAAAG-GTGCCACGGAGTTGTGGACTTAAAAGGATGCC
* * *
139022 ACGGAGTTGTGGACTTT
65 ACAGTGTTGTGGACTTA
* * *
139039 AAAGGGTGCCACGGCGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCA
1 AAAGGGTGCCACGGAGTTGTGGACTTAAAAAGGTGCCACGGAGTTGTGGACTTAAAAGGATGCCA
*
139104 CGGAT-TTGTGGACTTA
66 CAG-TGTTGTGGACTTA
* *
139120 CAAGGGTGCCACGGAGTTGTGGACTTTAAAAGAGTGCCACGGAGTTGTGGACTTTAAAA
1 AAAGGGTGCCACGGAGTTGTGGACTTAAAAAG-GTGCCACGGAGTTGTGGAC-TTAAAA
139179 AGAAATGCCA
Statistics
Matches: 268, Mismatches: 31, Indels: 11
0.86 0.10 0.04
Matches are distributed among these distances:
81 73 0.27
82 132 0.49
83 50 0.19
84 13 0.05
ACGTcount: A:0.29, C:0.15, G:0.32, T:0.24
Consensus pattern (81 bp):
AAAGGGTGCCACGGAGTTGTGGACTTAAAAAGGTGCCACGGAGTTGTGGACTTAAAAGGATGCCA
CAGTGTTGTGGACTTA
Found at i:146982 original size:10 final size:10
Alignment explanation
Indices: 146967--146998 Score: 55
Period size: 10 Copynumber: 3.2 Consensus size: 10
146957 CCATTTCATA
146967 TTTTTTTTCT
1 TTTTTTTTCT
146977 TTTTTTTTCT
1 TTTTTTTTCT
*
146987 TTTTCTTTCT
1 TTTTTTTTCT
146997 TT
1 TT
146999 CGTCTTCATC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (10 bp):
TTTTTTTTCT
Found at i:148351 original size:12 final size:12
Alignment explanation
Indices: 148330--148372 Score: 52
Period size: 12 Copynumber: 3.4 Consensus size: 12
148320 TCCTTCGAAT
148330 AAAAATAAAAAAC
1 AAAAA-AAAAAAC
148343 AAAAAAAAAAA-
1 AAAAAAAAAAAC
148354 AGAAAAAAAACAAC
1 A-AAAAAAAA-AAC
148368 AAAAA
1 AAAAA
148373 GGGTTCGGAT
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
11 1 0.04
12 14 0.52
13 11 0.41
14 1 0.04
ACGTcount: A:0.88, C:0.07, G:0.02, T:0.02
Consensus pattern (12 bp):
AAAAAAAAAAAC
Found at i:148352 original size:13 final size:13
Alignment explanation
Indices: 148330--148372 Score: 52
Period size: 13 Copynumber: 3.4 Consensus size: 13
148320 TCCTTCGAAT
*
148330 AAAAATAAAAAAC
1 AAAAAAAAAAAAC
148343 AAAAAAAAAAAA-
1 AAAAAAAAAAAAC
* *
148355 GAAAAAAAACAAC
1 AAAAAAAAAAAAC
148368 AAAAA
1 AAAAA
148373 GGGTTCGGAT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
12 10 0.40
13 15 0.60
ACGTcount: A:0.88, C:0.07, G:0.02, T:0.02
Consensus pattern (13 bp):
AAAAAAAAAAAAC
Found at i:149865 original size:393 final size:395
Alignment explanation
Indices: 149083--149875 Score: 1306
Period size: 393 Copynumber: 2.0 Consensus size: 395
149073 AATTGAACCT
*
149083 TTCAAATCAAAAAATGCAATCATTTGTATTCTCGAAAACGGACGAATAATTCAGACTATTTAAAC
1 TTCAAATCAAAAAATGCAATCATTTGTATTCTCGAAAACGGACGAATAATTCAGACTATTCAAAC
*
149148 ACCAAATCCGCCAATAGAGTTAGGATACTTCACAATGGCTACCCTTATGTGCTGGACTTTATGTC
66 ACCAAATCCGCCAATAGAGTTAGGATACTTCACAATGGCTACCCCTATGTGCTGGACTTTATGTC
*
149213 ATATCCCAATTAAGTCTATACAACCCGTAACCCCCTAGTGGAGTTTGAGCAGCATACAATCTTCA
131 ATATCCCAATTAAGTCTATACAACCCGTAACCCCCTAGTGGAGTTTGAGCAACATACAATCTTCA
*
149278 ATGGAATCAAGGAAAGCGCTGATCCCTAAAGGAATCATGACAAATTGTAATTCCCAATGGATTCA
196 ATGGAATCAAGGAAAACGCTGATCCCTAAAGGAATCATGACAAATTGTAATTCCCAATGGATTCA
149343 AGAAACTTGCAATGGCTTTGGTCATTTCCCGTATTAGACTTCATGCCACAATCATGCATTTGTGA
261 AGAAACTTGCAATGGCTTTGGTCATTTCCCGTATTAGACTTCATGCCACAATCATGCATTTGTGA
* * * *
149408 CATTCATAACATTTCATTTTGCATTATGCATTTGTGCTTCATCTTTTCTTTGGCATCACTCCAAA
326 CATGCATAACATTTCATTTTGCATAATGCATTTGTGCTTCATCTTTTCCTTGACATCACTCCAAA
149473 CCAGG
391 CCAGG
* * * * * *
149478 TTCAAATCAGAAAATGTAATCGTTTGTATTCTCGAAAACGGATGAATGA-T-AGACTATTCAAAG
1 TTCAAATCAAAAAATGCAATCATTTGTATTCTCGAAAACGGACGAATAATTCAGACTATTCAAAC
* *
149541 ACCAAATCC-CTTAATAGAGTTGGGATACTTCACAATGGCTACCCCTATGTGCTGGACTTTATGT
66 ACCAAATCCGC-CAATAGAGTTAGGATACTTCACAATGGCTACCCCTATGTGCTGGACTTTATGT
* * * **
149605 CATATCTCAGTTAAGTCTATACAACCTGTAACCCCCTAGTGGAGTTTGAGCAATGTACAATCTTC
130 CATATCCCAATTAAGTCTATACAACCCGTAACCCCCTAGTGGAGTTTGAGCAACATACAATCTTC
*
149670 AATGGAATCAAGGAAAATGCTGATCCCCT-AAGGAATCATGACAAATTGTAATTCCCAATGGATT
195 AATGGAATCAAGGAAAACGCTGAT-CCCTAAAGGAATCATGACAAATTGTAATTCCCAATGGATT
* * *
149734 CAAGAAACTTGTAATGGCTTTGGTCATTTCCTGTATTGGACTTCATGCCACAATCATGCATTTGT
259 CAAGAAACTTGCAATGGCTTTGGTCATTTCCCGTATTAGACTTCATGCCACAATCATGCATTTGT
*
149799 GACATGCATAACATTTCATTTTGCATAATGCATTTGTGCTTCATCTTTTCCTTGACATCGCTCCA
324 GACATGCATAACATTTCATTTTGCATAATGCATTTGTGCTTCATCTTTTCCTTGACATCACTCCA
149864 AACCAGG
389 AACCAGG
149871 TTCAA
1 TTCAA
149876 CCAACCTCAA
Statistics
Matches: 370, Mismatches: 26, Indels: 6
0.92 0.06 0.01
Matches are distributed among these distances:
392 1 0.00
393 320 0.86
394 5 0.01
395 44 0.12
ACGTcount: A:0.31, C:0.21, G:0.16, T:0.31
Consensus pattern (395 bp):
TTCAAATCAAAAAATGCAATCATTTGTATTCTCGAAAACGGACGAATAATTCAGACTATTCAAAC
ACCAAATCCGCCAATAGAGTTAGGATACTTCACAATGGCTACCCCTATGTGCTGGACTTTATGTC
ATATCCCAATTAAGTCTATACAACCCGTAACCCCCTAGTGGAGTTTGAGCAACATACAATCTTCA
ATGGAATCAAGGAAAACGCTGATCCCTAAAGGAATCATGACAAATTGTAATTCCCAATGGATTCA
AGAAACTTGCAATGGCTTTGGTCATTTCCCGTATTAGACTTCATGCCACAATCATGCATTTGTGA
CATGCATAACATTTCATTTTGCATAATGCATTTGTGCTTCATCTTTTCCTTGACATCACTCCAAA
CCAGG
Found at i:150240 original size:29 final size:29
Alignment explanation
Indices: 150198--150649 Score: 498
Period size: 28 Copynumber: 15.9 Consensus size: 29
150188 ATTCCTTGCC
150198 TTCAAAAGCCCACAAGTCAGTGGCATCTT
1 TTCAAAAGCCCACAAGTCAGTGGCATCTT
* *
150227 TTCAAAAGCCCACAAGTTAGTGGCACCTT
1 TTCAAAAGCCCACAAGTCAGTGGCATCTT
* * *
150256 TT-TAAAGCCCACAAGTCTA-TGGCAACCT
1 TTCAAAAGCCCACAAGTC-AGTGGCATCTT
* * *
150284 TT-AGAAGCCCACAAGTCGGTGGCACCATT
1 TTCAAAAGCCCACAAGTCAGTGGCATC-TT
* * *
150313 TTC-AAAGCCCATAAGTTAGTGGCACCTTT
1 TTCAAAAGCCCACAAGTCAGTGGCATC-TT
*
150342 TTC-AAAGCCCACAAGTCGGTGGCATCTT
1 TTCAAAAGCCCACAAGTCAGTGGCATCTT
150370 TTCAAAAGCCCACAAGTCAGTGGCATCTT
1 TTCAAAAGCCCACAAGTCAGTGGCATCTT
*
150399 TTC-AAAGCCCACAAGTCGGTGGCATCTT
1 TTCAAAAGCCCACAAGTCAGTGGCATCTT
* *
150427 TTCAAAAGCCCACAAGTTAGTGGTATCTT
1 TTCAAAAGCCCACAAGTCAGTGGCATCTT
*
150456 TTC-AAAGCCCACAAGTTAGTGGCATCTT
1 TTCAAAAGCCCACAAGTCAGTGGCATCTT
* *
150484 TTC-AAAGCCCACAAGTCAGTGGCAAC-C
1 TTCAAAAGCCCACAAGTCAGTGGCATCTT
* * * *
150511 TTCAGAAGCCCATAAGTCGGTGGCACCCCTT
1 TTCAAAAGCCCACAAGTCAGTGGCA--TCTT
* * *
150542 TT--AAAGCCCACAAGTCAGTGGAAAC-C
1 TTCAAAAGCCCACAAGTCAGTGGCATCTT
150568 TTCAAAAGCCCACAAGTCAGTGGCATCTT
1 TTCAAAAGCCCACAAGTCAGTGGCATCTT
* *
150597 TTCAAAAGCCCACAAGTTAGTGGCACCTT
1 TTCAAAAGCCCACAAGTCAGTGGCATCTT
* * *
150626 TT-TAAAGCCCACAAGGCAATGGCA
1 TTCAAAAGCCCACAAGTCAGTGGCA
150650 ACCTTCAAAA
Statistics
Matches: 361, Mismatches: 49, Indels: 27
0.83 0.11 0.06
Matches are distributed among these distances:
26 2 0.01
27 4 0.01
28 178 0.49
29 174 0.48
30 1 0.00
31 2 0.01
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.24
Consensus pattern (29 bp):
TTCAAAAGCCCACAAGTCAGTGGCATCTT
Found at i:150649 original size:57 final size:57
Alignment explanation
Indices: 150198--150649 Score: 505
Period size: 57 Copynumber: 7.9 Consensus size: 57
150188 ATTCCTTGCC
* * *
150198 TTCAAAAGCCCACAAGTCAGTGGCATCTTTTCAAAAGCCCACAAGTTAGTGGCACCTT
1 TTCAAAAGCCCACAAGTCAGTGGCACCTTTTC-AAAGCCCACAAGTCAGTGGCATCTT
* * *
150256 TT-TAAAGCCCACAAGTCTA-TGGCAACC-TTT-AGAAGCCCACAAGTCGGTGGCACCATT
1 TTCAAAAGCCCACAAGTC-AGTGGC-ACCTTTTCA-AAGCCCACAAGTCAGTGGCATC-TT
* * *
150313 TTC-AAAGCCCATAAGTTAGTGGCACCTTTTTCAAAGCCCACAAGTCGGTGGCATCTT
1 TTCAAAAGCCCACAAGTCAGTGGCACC-TTTTCAAAGCCCACAAGTCAGTGGCATCTT
* *
150370 TTCAAAAGCCCACAAGTCAGTGGCATCTTTTCAAAGCCCACAAGTCGGTGGCATCTT
1 TTCAAAAGCCCACAAGTCAGTGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATCTT
* * * *
150427 TTCAAAAGCCCACAAGTTAGTGGTATCTTTTCAAAGCCCACAAGTTAGTGGCATCTT
1 TTCAAAAGCCCACAAGTCAGTGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATCTT
* * *
150484 TTC-AAAGCCCACAAGTCAGTGGCAACC--TTCAGAAGCCCATAAGTCGGTGGCACCCCTT
1 TTCAAAAGCCCACAAGTCAGTGGC-ACCTTTTCA-AAGCCCACAAGTCAGTGGCA--TCTT
*
150542 TT--AAAGCCCACAAGTCAGTGGAAACC--TTCAAAAGCCCACAAGTCAGTGGCATCTT
1 TTCAAAAGCCCACAAGTCAGTGG-CACCTTTTC-AAAGCCCACAAGTCAGTGGCATCTT
* * * *
150597 TTCAAAAGCCCACAAGTTAGTGGCACCTTTTTAAAGCCCACAAGGCAATGGCA
1 TTCAAAAGCCCACAAGTCAGTGGCACCTTTTCAAAGCCCACAAGTCAGTGGCA
150650 ACCTTCAAAA
Statistics
Matches: 344, Mismatches: 30, Indels: 41
0.83 0.07 0.10
Matches are distributed among these distances:
55 10 0.03
56 62 0.18
57 214 0.62
58 57 0.17
59 1 0.00
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.24
Consensus pattern (57 bp):
TTCAAAAGCCCACAAGTCAGTGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATCTT
Found at i:150653 original size:29 final size:28
Alignment explanation
Indices: 150201--150654 Score: 459
Period size: 29 Copynumber: 15.9 Consensus size: 28
150191 CCTTGCCTTC
*
150201 AAAAGCCCACAAGTCAGTGGCATCTTTT
1 AAAAGCCCACAAGTCAGTGGCACCTTTT
*
150229 CAAAAGCCCACAAGTTAGTGGCACCTTTT
1 -AAAAGCCCACAAGTCAGTGGCACCTTTT
*
150258 TAAAGCCCACAAGTCTA-TGGCAACC-TTT
1 AAAAGCCCACAAGTC-AGTGGC-ACCTTTT
* *
150286 AGAAGCCCACAAGTCGGTGGCACCATTTT
1 AAAAGCCCACAAGTCAGTGGCACC-TTTT
* * *
150315 CAAAGCCCATAAGTTAGTGGCACCTTTTT
1 AAAAGCCCACAAGTCAGTGGCACC-TTTT
* * *
150344 CAAAGCCCACAAGTCGGTGGCATCTTTT
1 AAAAGCCCACAAGTCAGTGGCACCTTTT
*
150372 CAAAAGCCCACAAGTCAGTGGCATCTTTT
1 -AAAAGCCCACAAGTCAGTGGCACCTTTT
* * *
150401 CAAAGCCCACAAGTCGGTGGCATCTTTT
1 AAAAGCCCACAAGTCAGTGGCACCTTTT
* * *
150429 CAAAAGCCCACAAGTTAGTGGTATCTTTT
1 -AAAAGCCCACAAGTCAGTGGCACCTTTT
* * *
150458 CAAAGCCCACAAGTTAGTGGCATCTTTT
1 AAAAGCCCACAAGTCAGTGGCACCTTTT
* *
150486 CAAAGCCCACAAGTCAGTGGCAACC-TTC
1 AAAAGCCCACAAGTCAGTGGC-ACCTTTT
* * *
150514 AGAAGCCCATAAGTCGGTGGCACCCCTTTT
1 AAAAGCCCACAAGTCAGTGGCA--CCTTTT
* *
150544 -AAAGCCCACAAGTCAGTGGAAACC-TTC
1 AAAAGCCCACAAGTCAGTGG-CACCTTTT
*
150571 AAAAGCCCACAAGTCAGTGGCATCTTTT
1 AAAAGCCCACAAGTCAGTGGCACCTTTT
*
150599 CAAAAGCCCACAAGTTAGTGGCACCTTTT
1 -AAAAGCCCACAAGTCAGTGGCACCTTTT
* * *
150628 TAAAGCCCACAAGGCAATGGCAACCTT
1 AAAAGCCCACAAGTCAGTGGC-ACCTT
150655 CAAAAGCAGA
Statistics
Matches: 360, Mismatches: 49, Indels: 32
0.82 0.11 0.07
Matches are distributed among these distances:
27 8 0.02
28 172 0.48
29 177 0.49
30 3 0.01
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.24
Consensus pattern (28 bp):
AAAAGCCCACAAGTCAGTGGCACCTTTT
Found at i:150669 original size:85 final size:85
Alignment explanation
Indices: 150202--150658 Score: 473
Period size: 85 Copynumber: 5.4 Consensus size: 85
150192 CTTGCCTTCA
* * * *
150202 AAAGCCCACAAGTCAGTGGCATCTTTTCAAAAGCCCACAAGTTAGTGGCACCTTTT-TAAAGCCC
1 AAAGCCCACAAGTCAGTGGCAACTCTTC-AAAGCCCACAAGTCAGTGGCACCTTTTCAAAAGCCC
150266 ACAAGTCTA-TGGCAACC--TTT
65 ACAAGT-TAGTGGC-ACCTTTTT
* * * * *
150286 AGAAGCCCACAAGTCGGTGGCACCATTTTCAAAGCCCATAAGTTAGTGGCACCTTTTTC-AAAGC
1 A-AAGCCCACAAGTCAGTGGCAAC-TCTTCAAAGCCCACAAGTCAGTGGCACC-TTTTCAAAAGC
** * *
150350 CCACAAGTCGGTGGCATCTTTTCA
63 CCACAAGTTAGTGGCACCTTTT-T
* * * *
150374 AAAGCCCACAAGTCAGTGGCATCTTTTCAAAGCCCACAAGTCGGTGGCATCTTTTCAAAAGCCCA
1 AAAGCCCACAAGTCAGTGGCAACTCTTCAAAGCCCACAAGTCAGTGGCACCTTTTCAAAAGCCCA
* * *
150439 CAAGTTAGTGGTATCTTTTC
66 CAAGTTAGTGGCACCTTTTT
* * * *
150459 AAAGCCCACAAGTTAGTGGCATCTTTTCAAAGCCCACAAGTCAGTGGCAACC--TTCAGAAGCCC
1 AAAGCCCACAAGTCAGTGGCAACTCTTCAAAGCCCACAAGTCAGTGGC-ACCTTTTCAAAAGCCC
* ** *
150522 ATAAGTCGGTGGCACCCCTTTT
65 ACAAGTTAGTGGCA-CCTTTTT
* *
150544 AAAGCCCACAAGTCAGTGGAAAC-CTTCAAAAGCCCACAAGTCAGTGGCATCTTTTCAAAAGCCC
1 AAAGCCCACAAGTCAGTGGCAACTCTTC-AAAGCCCACAAGTCAGTGGCACCTTTTCAAAAGCCC
150608 ACAAGTTAGTGGCACCTTTTT
65 ACAAGTTAGTGGCACCTTTTT
* *
150629 AAAGCCCACAAGGCAATGGCAAC-CTTCAAA
1 AAAGCCCACAAGTCAGTGGCAACTCTTCAAA
150659 AGCAGACAAG
Statistics
Matches: 318, Mismatches: 41, Indels: 28
0.82 0.11 0.07
Matches are distributed among these distances:
84 29 0.09
85 169 0.53
86 97 0.31
87 22 0.07
88 1 0.00
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (85 bp):
AAAGCCCACAAGTCAGTGGCAACTCTTCAAAGCCCACAAGTCAGTGGCACCTTTTCAAAAGCCCA
CAAGTTAGTGGCACCTTTTT
Found at i:154846 original size:32 final size:32
Alignment explanation
Indices: 154798--154951 Score: 215
Period size: 32 Copynumber: 4.8 Consensus size: 32
154788 CTAGTGGAGG
* *
154798 AACCTTC-TCTAAAGCCCACACAAGCTAGTGGC
1 AACCTTCTTC-AAAGCCCACACAAGTTGGTGGC
*
154830 AACTTTCTTCAAAGCCCACACAAGTTGGTGGC
1 AACCTTCTTCAAAGCCCACACAAGTTGGTGGC
*
154862 AACCCTT-TTCAAAGCCCACACAAGATGGTGGC
1 AA-CCTTCTTCAAAGCCCACACAAGTTGGTGGC
154894 AACCTTCTTCAAAGCCCACACAAGTTGGTGGC
1 AACCTTCTTCAAAGCCCACACAAGTTGGTGGC
*
154926 AACCCT-TTCAAAAGCCCACACAAGTT
1 AACCTTCTTC-AAAGCCCACACAAGTT
154952 AATGGCATCT
Statistics
Matches: 111, Mismatches: 7, Indels: 8
0.88 0.06 0.06
Matches are distributed among these distances:
31 7 0.06
32 99 0.89
33 5 0.05
ACGTcount: A:0.31, C:0.32, G:0.16, T:0.21
Consensus pattern (32 bp):
AACCTTCTTCAAAGCCCACACAAGTTGGTGGC
Found at i:154909 original size:64 final size:64
Alignment explanation
Indices: 154808--154972 Score: 244
Period size: 64 Copynumber: 2.6 Consensus size: 64
154798 AACCTTCTCT
* *
154808 AAAGCCCACACAAGCTAGTGGCAACTTTCTTCAAAGCCCACACAAGTTGGTGGCAACCCTTTTC-
1 AAAGCCCACACAAGATAGTGGCAACCTTCTTCAAAGCCCACACAAGTTGGTGGCAACCC-TTTCA
*
154872 AAAGCCCACACAAGATGGTGGCAACCTTCTTCAAAGCCCACACAAGTTGGTGGCAACCCTTTCA
1 AAAGCCCACACAAGATAGTGGCAACCTTCTTCAAAGCCCACACAAGTTGGTGGCAACCCTTTCA
* * * *
154936 AAAGCCCACACAAGTTAATGGC-ATCTTCTTCTAAGCC
1 AAAGCCCACACAAGATAGTGGCAACCTTCTTCAAAGCC
154973 TAATGTCGTT
Statistics
Matches: 92, Mismatches: 8, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
63 17 0.18
64 75 0.82
ACGTcount: A:0.31, C:0.31, G:0.17, T:0.21
Consensus pattern (64 bp):
AAAGCCCACACAAGATAGTGGCAACCTTCTTCAAAGCCCACACAAGTTGGTGGCAACCCTTTCA
Found at i:155197 original size:52 final size:49
Alignment explanation
Indices: 155068--155199 Score: 138
Period size: 49 Copynumber: 2.6 Consensus size: 49
155058 TCCTTCTCAT
* * * *
155068 CTTTAAGTCTAATGTCGCTGGCCTTGAATCAATATATTGGCACCTTCAT
1 CTTTAAGCCCAATGTCGCTGGCCTTGAATCAACATATTGGCACCTTCAA
* ** * * * *
155117 CTTTAAGTCTGATATCGCTGGCCTTGAATCAACGTATTGGCATCTTGAA
1 CTTTAAGCCCAATGTCGCTGGCCTTGAATCAACATATTGGCACCTTCAA
155166 CATTCCTAAGCCCAATGTCGCTGGCCTTGAATCA
1 C-TT--TAAGCCCAATGTCGCTGGCCTTGAATCA
155200 GTACATTGGC
Statistics
Matches: 69, Mismatches: 11, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
49 43 0.62
50 2 0.03
52 24 0.35
ACGTcount: A:0.24, C:0.24, G:0.18, T:0.33
Consensus pattern (49 bp):
CTTTAAGCCCAATGTCGCTGGCCTTGAATCAACATATTGGCACCTTCAA
Found at i:155209 original size:52 final size:48
Alignment explanation
Indices: 155068--155216 Score: 129
Period size: 49 Copynumber: 3.0 Consensus size: 48
155058 TCCTTCTCAT
* * * * *
155068 CTTTAAGTCTAATGTCGCTGGCCTTGAATCAATATATTGGCACCTTCAT
1 CTTTAAGCCCAATGTCGCTGGCCTTGAATC-ATACATTGGCATCTTCAA
* ** * *
155117 CTTTAAGTCTGATATCGCTGGCCTTGAATCA-ACGTATTGGCATCTTGAA
1 CTTTAAGCCCAATGTCGCTGGCCTTGAATCATAC--ATTGGCATCTTCAA
155166 CATTCCTAAGCCCAATGTCGCTGGCCTTGAATCAGTACATTGGCATTCTTC
1 C-TT--TAAGCCCAATGTCGCTGGCCTTGAATCA-TACATTGGCA-TCTTC
155217 TCATCTTTAA
Statistics
Matches: 81, Mismatches: 11, Indels: 12
0.78 0.11 0.12
Matches are distributed among these distances:
47 1 0.01
48 1 0.01
49 40 0.49
50 2 0.02
52 31 0.38
53 4 0.05
54 2 0.02
ACGTcount: A:0.23, C:0.24, G:0.18, T:0.34
Consensus pattern (48 bp):
CTTTAAGCCCAATGTCGCTGGCCTTGAATCATACATTGGCATCTTCAA
Found at i:155241 original size:52 final size:52
Alignment explanation
Indices: 155060--155367 Score: 245
Period size: 52 Copynumber: 6.0 Consensus size: 52
155050 CTTTATCATC
** *
155060 CTTCTCATCTTTAAGTCTAATGTCGCTGGCCTTGAATCAATATATTGGCA--
1 CTTCTCATCTTTAAGTCTAATGTCGCTGGCCTTGAATCAGCACATTGGCATT
* * * * **
155110 CCT-TCATCTTTAAGTCTGATATCGCTGGCCTTGAATCAACGTATTGGCA-T
1 CTTCTCATCTTTAAGTCTAATGTCGCTGGCCTTGAATCAGCACATTGGCATT
** * * * *
155160 CTTGAACAT-TCCTAAGCCCAATGTCGCTGGCCTTGAATCAGTACATTGGCATT
1 CTT-CTCATCT-TTAAGTCTAATGTCGCTGGCCTTGAATCAGCACATTGGCATT
* * *
155213 CTTCTCATCTTTAAGTGTAATG-CTGCTGGCCGTGAATCAGCACATTGACATT
1 CTTCTCATCTTTAAGTCTAATGTC-GCTGGCCTTGAATCAGCACATTGGCATT
* * * *
155265 CTTCGT-ATATTTAAGTCTAATGTCGTTAGCCTTGAATTAGCACATTGGCACCTT
1 CTTC-TCATCTTTAAGTCTAATGTCGCTGGCCTTGAATCAGCACATTGGCA--TT
* * * * * * *
155319 -TTGTCATCTTTAAGCCTAATATCGTTAGCCTTGAATTAGCATATTGGCA
1 CTTCTCATCTTTAAGTCTAATGTCGCTGGCCTTGAATCAGCACATTGGCA
155368 CCCTTATCAT
Statistics
Matches: 209, Mismatches: 37, Indels: 21
0.78 0.14 0.08
Matches are distributed among these distances:
49 42 0.20
50 4 0.02
51 2 0.01
52 110 0.53
53 49 0.23
54 2 0.01
ACGTcount: A:0.24, C:0.22, G:0.18, T:0.36
Consensus pattern (52 bp):
CTTCTCATCTTTAAGTCTAATGTCGCTGGCCTTGAATCAGCACATTGGCATT
Done.