Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold30
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2650045
ACGTcount: A:0.30, C:0.17, G:0.18, T:0.30
Warning! 144233 characters in sequence are not A, C, G, or T
File 5 of 17
Found at i:605480 original size:13 final size:12
Alignment explanation
Indices: 605466--605520 Score: 67
Period size: 13 Copynumber: 4.4 Consensus size: 12
605456 TTTTTCTTTG
605466 TTTTGTTTTTTT
1 TTTTGTTTTTTT
605478 GTTTTGTTTTTTT
1 -TTTTGTTTTTTT
605491 TTTT-TTTGCTTTT
1 TTTTGTTT--TTTT
*
605504 TTTTCTTTTTTT
1 TTTTGTTTTTTT
605516 TTTTG
1 TTTTG
605521 AAGAGAAAGT
Statistics
Matches: 38, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
11 3 0.08
12 12 0.32
13 20 0.53
14 3 0.08
ACGTcount: A:0.00, C:0.04, G:0.09, T:0.87
Consensus pattern (12 bp):
TTTTGTTTTTTT
Found at i:605491 original size:22 final size:21
Alignment explanation
Indices: 605455--605520 Score: 80
Period size: 22 Copynumber: 3.0 Consensus size: 21
605445 TCTTTTCTCT
605455 CTTTTTCTTTGTTTTGTTTTTTTG
1 CTTTTT-TTT-TTTT-TTTTTTTG
*
605479 -TTTTGTTTTTTTTTTTTTTG
1 CTTTTTTTTTTTTTTTTTTTG
605499 CTTTTTTTTCTTTTTTTTTTTG
1 CTTTTTTTT-TTTTTTTTTTTG
605521 AAGAGAAAGT
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
20 8 0.21
21 11 0.29
22 15 0.39
23 4 0.11
ACGTcount: A:0.00, C:0.06, G:0.09, T:0.85
Consensus pattern (21 bp):
CTTTTTTTTTTTTTTTTTTTG
Found at i:605518 original size:15 final size:15
Alignment explanation
Indices: 605441--605519 Score: 70
Period size: 15 Copynumber: 5.1 Consensus size: 15
605431 AAGCAGGTTC
* * *
605441 TTTTTCTTTTCTCTC
1 TTTTTCTTTTTTTTT
605456 TTTTTCTTTGTTTTGTT
1 TTTTTCTTT-TTTT-TT
*
605473 TTTTTGTTTTGTTTTT
1 TTTTTCTTTT-TTTTT
**
605489 TTTTT-TTTTGCTTT
1 TTTTTCTTTTTTTTT
605503 TTTTTCTTTTTTTTT
1 TTTTTCTTTTTTTTT
605518 TT
1 TT
605520 GAAGAGAAAG
Statistics
Matches: 52, Mismatches: 8, Indels: 8
0.76 0.12 0.12
Matches are distributed among these distances:
14 8 0.15
15 22 0.42
16 10 0.19
17 12 0.23
ACGTcount: A:0.00, C:0.09, G:0.06, T:0.85
Consensus pattern (15 bp):
TTTTTCTTTTTTTTT
Found at i:618005 original size:78 final size:78
Alignment explanation
Indices: 617899--618104 Score: 209
Period size: 79 Copynumber: 2.6 Consensus size: 78
617889 GAGATAATAA
* * * * * *
617899 CGGGGTTGGAGTGTCCCCT-TGAAAATAACGGGGCTGGAGTATCCCCGGTTGTGAGAAATCGATG
1 CGGGGTTGGAGTATCCCCTCAG-AAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATCAAT-
*
617963 A-TTAGAAAAAAAAT
64 ATTTAGAAAAAAAAC
* * * *
617977 CGGGATTGGAGTATCCCCTCAGAAATAACGAGGTTGGAGTATCCCCAATTATGAGAAATTAATAT
1 CGGGGTTGGAGTATCCCCTCAGAAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATCAATA-
* * * *
618042 TTTGGGAATAAAGC
65 TTTAGAAAAAAAAC
* **
618056 CGGGGTTGGAGTATCCCCTCGGAGGTAACGGGGTTGGAGTATCCCCGAT
1 CGGGGTTGGAGTATCCCCTCAGAAATAACGGGGTTGGAGTATCCCCGAT
618105 GAAATAACGA
Statistics
Matches: 104, Mismatches: 21, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
77 1 0.01
78 51 0.49
79 52 0.50
ACGTcount: A:0.29, C:0.17, G:0.30, T:0.24
Consensus pattern (78 bp):
CGGGGTTGGAGTATCCCCTCAGAAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATCAATAT
TTAGAAAAAAAAC
Found at i:618112 original size:28 final size:28
Alignment explanation
Indices: 618056--618127 Score: 90
Period size: 28 Copynumber: 2.6 Consensus size: 28
618046 GGAATAAAGC
** **
618056 CGGGGTTGGAGTATCCCCTCGGAGGTAA
1 CGGGGTTGGAGTATCCCCGAGGAAATAA
*
618084 CGGGGTTGGAGTATCCCCGATGAAATAA
1 CGGGGTTGGAGTATCCCCGAGGAAATAA
*
618112 CGAGGTTGGAGTATCC
1 CGGGGTTGGAGTATCC
618128 TCAATTGTGA
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 38 1.00
ACGTcount: A:0.22, C:0.19, G:0.36, T:0.22
Consensus pattern (28 bp):
CGGGGTTGGAGTATCCCCGAGGAAATAA
Found at i:618119 original size:107 final size:108
Alignment explanation
Indices: 617977--618181 Score: 279
Period size: 107 Copynumber: 1.9 Consensus size: 108
617967 GAAAAAAAAT
*
617977 CGGGATTGGAGTATCCCCTCAGAAATAACGAGGTTGGAGTATCCCCAATTATGAGAAATTAAT-A
1 CGGGATTGGAGTATCCCCTCAGAAATAACGAGGTTGGAGTATCCCCAATTATGAAAAATTAATGA
* * *
618041 TTTTGGGAATAAAGCCGGGGTTGGAGTATCCCCTCGGAGGTAA
66 TTTTGGAAATAAAACCGGAGTTGGAGTATCCCCTCGGAGGTAA
* * * * **
618084 CGGGGTTGGAGTATCCCC-GATGAAATAACGAGGTTGGAGTATCCTCAATTGTGAAAAATTGGTG
1 CGGGATTGGAGTATCCCCTCA-GAAATAACGAGGTTGGAGTATCCCCAATTATGAAAAATTAATG
* *
618148 TTTTTGGAAATAAAATCGGAGTTGGAGTATCCCC
65 ATTTTGGAAATAAAACCGGAGTTGGAGTATCCCC
618182 GATTAAAGGA
Statistics
Matches: 84, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
106 1 0.01
107 54 0.64
108 29 0.35
ACGTcount: A:0.29, C:0.16, G:0.28, T:0.27
Consensus pattern (108 bp):
CGGGATTGGAGTATCCCCTCAGAAATAACGAGGTTGGAGTATCCCCAATTATGAAAAATTAATGA
TTTTGGAAATAAAACCGGAGTTGGAGTATCCCCTCGGAGGTAA
Found at i:618205 original size:52 final size:50
Alignment explanation
Indices: 618138--618284 Score: 159
Period size: 51 Copynumber: 2.8 Consensus size: 50
618128 TCAATTGTGA
* *
618138 AAAATTGGTGTTTTTGGAAATAAAATCGGAGTTGGAGTATCCCCGATTAAAGG
1 AAAATTGGTG-TTTTGGAAATAAAACCGG-GTTGGAGTATCCCCGAAT-AAGG
* * **
618191 AAAATTGGTGTTTTGAAAATAAAGCCGGGGTTGGAGTATCCCCGAATGTGG
1 AAAATTGGTGTTTTGGAAATAAAACC-GGGTTGGAGTATCCCCGAATAAGG
* * * *
618242 AAAATCGATGATTTGGAAATAAAACCATGGTTGGAGTATCCCC
1 AAAATTGGTGTTTTGGAAATAAAACC-GGGTTGGAGTATCCCC
618285 TCGAAGATAA
Statistics
Matches: 80, Mismatches: 13, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
51 38 0.47
52 30 0.38
53 12 0.15
ACGTcount: A:0.33, C:0.12, G:0.27, T:0.28
Consensus pattern (50 bp):
AAAATTGGTGTTTTGGAAATAAAACCGGGTTGGAGTATCCCCGAATAAGG
Found at i:618274 original size:51 final size:50
Alignment explanation
Indices: 618115--618284 Score: 171
Period size: 52 Copynumber: 3.3 Consensus size: 50
618105 GAAATAACGA
* * *
618115 GGTTGGAGTATCCTC-AATTGTGAAAAATTGGTGTTTTTGGAAATAAAATCG
1 GGTTGGAGTATCCCCGAA-TGTGGAAAATTGGTG-TTTTGGAAATAAAACCG
* ** * *
618166 GAGTTGGAGTATCCCCGATTAAAGGAAAATTGGTGTTTTGAAAATAAAGCCGG
1 G-GTTGGAGTATCCCCGAAT-GTGGAAAATTGGTGTTTTGGAAATAAAACC-G
* * * *
618219 GGTTGGAGTATCCCCGAATGTGGAAAATCGATGATTTGGAAATAAAACCAT
1 GGTTGGAGTATCCCCGAATGTGGAAAATTGGTGTTTTGGAAATAAAACC-G
618270 GGTTGGAGTATCCCC
1 GGTTGGAGTATCCCC
618285 TCGAAGATAA
Statistics
Matches: 97, Mismatches: 18, Indels: 8
0.79 0.15 0.07
Matches are distributed among these distances:
51 39 0.40
52 44 0.45
53 14 0.14
ACGTcount: A:0.32, C:0.12, G:0.27, T:0.29
Consensus pattern (50 bp):
GGTTGGAGTATCCCCGAATGTGGAAAATTGGTGTTTTGGAAATAAAACCG
Found at i:618310 original size:79 final size:80
Alignment explanation
Indices: 618216--618393 Score: 229
Period size: 79 Copynumber: 2.2 Consensus size: 80
618206 AAAATAAAGC
* * * *
618216 CGGGGTTGGAGTATCCCCGAATGTG-GAAAATCGATGA-TTTGGAAATAAAACC-ATGGTTGGAG
1 CGGGGTTGGAGTATCCCCGAATATGAG-AAATCAAT-ATTTTAGAAATAAAACCGAGGGTTGGAG
*
618278 TATCCCCTCGAAGATAA
64 TATCCCCTCGAAAATAA
* * * *
618295 CGGGGTTGGAGTAT-CCCGATTATGAGAAATTAATATTTTAGAAATAAAGCCGGGGGTTGGAGTA
1 CGGGGTTGGAGTATCCCCGAATATGAGAAATCAATATTTTAGAAATAAAACCGAGGGTTGGAGTA
618359 TCCCCTCGAAAATAA
66 TCCCCTCGAAAATAA
618374 CGGGGTTGGAGTATCCCCGA
1 CGGGGTTGGAGTATCCCCGA
618394 TGAAATATTG
Statistics
Matches: 86, Mismatches: 9, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
77 1 0.01
78 27 0.31
79 53 0.62
80 5 0.06
ACGTcount: A:0.30, C:0.16, G:0.29, T:0.25
Consensus pattern (80 bp):
CGGGGTTGGAGTATCCCCGAATATGAGAAATCAATATTTTAGAAATAAAACCGAGGGTTGGAGTA
TCCCCTCGAAAATAA
Found at i:621339 original size:20 final size:20
Alignment explanation
Indices: 621286--621341 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 20
621276 ACATCTTTTT
*
621286 CATGTATCGATACATTGAAA
1 CATGTATCGATACTTTGAAA
*
621306 CATGTATCGATACTTTGAAT
1 CATGTATCGATACTTTGAAA
**
621326 TGTGTATCGATACTTT
1 CATGTATCGATACTTT
621342 TAATGGTTTT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.30, C:0.14, G:0.16, T:0.39
Consensus pattern (20 bp):
CATGTATCGATACTTTGAAA
Found at i:621805 original size:13 final size:13
Alignment explanation
Indices: 621787--621812 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
621777 ACATTTTGGG
621787 ATGTATCGATACA
1 ATGTATCGATACA
621800 ATGTATCGATACA
1 ATGTATCGATACA
621813 TATTGTGTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:621807 original size:33 final size:32
Alignment explanation
Indices: 621765--621832 Score: 109
Period size: 33 Copynumber: 2.1 Consensus size: 32
621755 CGTTACAAGC
*
621765 CAATGTATCGATACATTTTGGGATGTATCGATA
1 CAATGTATCGATACATATTGGG-TGTATCGATA
*
621798 CAATGTATCGATACATATTGTGTGTATCGATA
1 CAATGTATCGATACATATTGGGTGTATCGATA
621830 CAA
1 CAA
621833 ACAGTTAAGG
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
32 13 0.39
33 20 0.61
ACGTcount: A:0.32, C:0.13, G:0.19, T:0.35
Consensus pattern (32 bp):
CAATGTATCGATACATATTGGGTGTATCGATA
Found at i:621920 original size:20 final size:21
Alignment explanation
Indices: 621873--621925 Score: 72
Period size: 20 Copynumber: 2.6 Consensus size: 21
621863 GCCAATGACC
**
621873 TGTATCGATACATTCTTTTCA
1 TGTATCGATACATTCTGGTCA
*
621894 AGTATCGATACATT-TGGTCA
1 TGTATCGATACATTCTGGTCA
621914 TGTATCGATACA
1 TGTATCGATACA
621926 ATGTATCGAT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
20 15 0.54
21 13 0.46
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.40
Consensus pattern (21 bp):
TGTATCGATACATTCTGGTCA
Found at i:621931 original size:13 final size:13
Alignment explanation
Indices: 621913--621937 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
621903 ACATTTGGTC
621913 ATGTATCGATACA
1 ATGTATCGATACA
621926 ATGTATCGATAC
1 ATGTATCGATAC
621938 TATGCAATCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:622520 original size:22 final size:22
Alignment explanation
Indices: 622493--622537 Score: 74
Period size: 22 Copynumber: 2.0 Consensus size: 22
622483 TTTTCTTTTC
622493 TCTCCCCCTTAATCAAAA-AATT
1 TCTCCCCCTTAAT-AAAATAATT
622515 TCTCCCCCTTAATAAAATAATT
1 TCTCCCCCTTAATAAAATAATT
622537 T
1 T
622538 AACAATTTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
21 4 0.18
22 18 0.82
ACGTcount: A:0.36, C:0.29, G:0.00, T:0.36
Consensus pattern (22 bp):
TCTCCCCCTTAATAAAATAATT
Found at i:623955 original size:20 final size:22
Alignment explanation
Indices: 623911--623962 Score: 63
Period size: 20 Copynumber: 2.5 Consensus size: 22
623901 GCTGCTAGTG
*
623911 TGGGGGCTGCCTGGTTACGAGC
1 TGGGGGCTGCCTGGTTACGACC
*
623933 TGGGGG-TGCC-GGTTGCGACC
1 TGGGGGCTGCCTGGTTACGACC
*
623953 TGGTGGCTGC
1 TGGGGGCTGC
623963 TGCCTAGAGG
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
20 13 0.50
21 7 0.27
22 6 0.23
ACGTcount: A:0.06, C:0.23, G:0.48, T:0.23
Consensus pattern (22 bp):
TGGGGGCTGCCTGGTTACGACC
Found at i:624414 original size:13 final size:13
Alignment explanation
Indices: 624396--624420 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
624386 ATAAACCCTT
624396 TGTATCGATACAC
1 TGTATCGATACAC
624409 TGTATCGATACA
1 TGTATCGATACA
624421 GAGAATGCTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAC
Found at i:630721 original size:587 final size:588
Alignment explanation
Indices: 626318--631021 Score: 9131
Period size: 588 Copynumber: 8.0 Consensus size: 588
626308 GAGTTCTAGA
*
626318 AGCAGAGAAATTATGGCTAATACCGTTATCATTACAAAATTTATCAAAACCAAGGTTTTCAAATT
1 AGCAAAGAAATTATGGCTAATACCGTTATCATTACAAAATTTATCAAAACCAAGGTTTTCAAATT
*
626383 CTCTTCCGTGATCACTTCTTATACTAGATAAGGAGTAACCCTTTTCATTTTGAACTATTTTACAA
66 CTCTTCCGTGATCACTTCTTATACTAGATAAGGAGTAACCTTTTTCATTTTGAACTATTTTACAA
626448 AACGTGATGAATTTTTCTAAAGCTTCATCTTTAGTGCTTAAAAATAAAACCCAAGTGTATCTTGA
131 AACGTGATGAATTTTTCTAAAGCTTCATCTTTAGTGCTTAAAAATAAAACCCAAGTGTATCTTGA
626513 ATAATCATCCACAATGACAAATCCATATCTTTTTCCTCCTAGACTTTGCGTTCTAGTTGGACCAA
196 ATAATCATCCACAATGACAAATCCATATCTTTTTCCTCCTAGACTTTGCGTTCTAGTTGGACCAA
626578 AAAGATCCATGTGAACTAGTTGTAGAACTCTAGAAGTCGTGACAATGTTTATAGGTTTAAAAGAA
261 AAAGATCCATGTGAACTAGTTGTAGAACTCTAGAAGTCGTGACAATGTTTATAGGTTTAAAAGAA
626643 TTTCTTTTATGCTTACCTTTAACACATGCATCACAAACTCTATCACAATCAAATTTGACCTTAGG
326 TTTCTTTTATGCTTACCTTTAACACATGCATCACAAACTCTATCACAATCAAATTTGACCTTAGG
626708 TAATCCAATTACGAGATTTTTCTTAGATAACTTAAAAAGTACGCTCATACTTGCATGTCCTACTT
391 TAATCCAATTACGAGATTTTTCTTAGATAACTTAAAAAGTACGCTCATACTTGCATGTCCTACTT
626773 TTCGGTGCCATAGCCAAGGTATGTCATTGTTGCCGGCAACAAAACATACGTTTTGGGAACTTAAA
456 TTCGGTGCCATAGCCAAGGTATGTCATTGTTGCCGGCAACAAAACATACGTTTTGGGAACTTAAA
626838 ACATCTAAATGTACAACATAAATGTTCCCTTCCCTATGGCCTAAGAAAATTGTTTTATTACTACA
521 ACATCTAAATGTACAACATAAATGTTCCCTTCCCTATGGCCTAAGAAAATTGTTTTATTACTACA
*
626903 AAT
586 AAC
626906 AGCAAAGAAATTATGGCTAATACCGTTATCATTACAAAATTTATCAAAACCAAGGTTTTCAAATT
1 AGCAAAGAAATTATGGCTAATACCGTTATCATTACAAAATTTATCAAAACCAAGGTTTTCAAATT
626971 CTCTTCCGTGATCACTTCTTATACTAGATAAGGAGTAACCTTTTTCATTTTGAACTATTTTACAA
66 CTCTTCCGTGATCACTTCTTATACTAGATAAGGAGTAACCTTTTTCATTTTGAACTATTTTACAA
627036 AACGTGATGAATTTTTCTAAAGCTTCATCTTTAGTGCTTAAAAATAAAACCCAAGTGTATCTTGA
131 AACGTGATGAATTTTTCTAAAGCTTCATCTTTAGTGCTTAAAAATAAAACCCAAGTGTATCTTGA
*
627101 ATAATCATTCACAATGACAAATCCATATCTTTTTCCTCCTAGACTTTGCGTTCTAGTTGGACCAA
196 ATAATCATCCACAATGACAAATCCATATCTTTTTCCTCCTAGACTTTGCGTTCTAGTTGGACCAA
627166 AAAGATCCATGTGAACTAGTTGTAGAACTCTAGAAGTCGTGACAATGTTTATAGGTTTAAAAGAA
261 AAAGATCCATGTGAACTAGTTGTAGAACTCTAGAAGTCGTGACAATGTTTATAGGTTTAAAAGAA
*
627231 TTTATTTTATGCTTACCTTTAACACATGCATCACAAACTCTATCACAATCAAATTTGACCTTAGG
326 TTTCTTTTATGCTTACCTTTAACACATGCATCACAAACTCTATCACAATCAAATTTGACCTTAGG
627296 TAATCCAATTACGAGATTTTTCTTAGATAACTTAAAAAGTACGCTCATACTTGCATGTCCTACTT
391 TAATCCAATTACGAGATTTTTCTTAGATAACTTAAAAAGTACGCTCATACTTGCATGTCCTACTT
627361 TTCGGTGCCATAGCCAAGGTATGTCATTGTTGCCGGCAACAAAACATACGTTTTGGGAACTTAAA
456 TTCGGTGCCATAGCCAAGGTATGTCATTGTTGCCGGCAACAAAACATACGTTTTGGGAACTTAAA
*
627426 ACATCTAAATGTACAACATAAATGTTCACTTCCCTATGGCCTAAGAAAATTGTTTTATTACTACA
521 ACATCTAAATGTACAACATAAATGTTCCCTTCCCTATGGCCTAAGAAAATTGTTTTATTACTACA
627491 AAC
586 AAC
627494 AGCAAAGAAATTATGGCTAATACCGTTATCATTACAAAATTTATCAAAACCAAGGTTTTCAAATT
1 AGCAAAGAAATTATGGCTAATACCGTTATCATTACAAAATTTATCAAAACCAAGGTTTTCAAATT
627559 CTCTTCCGTGATCACTTCTTATACTAGATAAGGAGTAACCTTTTTCATTTTGAACTATTTTACAA
66 CTCTTCCGTGATCACTTCTTATACTAGATAAGGAGTAACCTTTTTCATTTTGAACTATTTTACAA
627624 AACGTGATGAATTTTTCTAAAGCTTCATCTTTAGTGCTTAAAAATAAAACCCAAGTGTATCTTGA
131 AACGTGATGAATTTTTCTAAAGCTTCATCTTTAGTGCTTAAAAATAAAACCCAAGTGTATCTTGA
627689 ATAATCATCCACAATGACAAATCCATATCTTTTTCCTCCTAGACTTTGCGTTCTAGTTGGACCAA
196 ATAATCATCCACAATGACAAATCCATATCTTTTTCCTCCTAGACTTTGCGTTCTAGTTGGACCAA
627754 AAAGATCCATGTGAACTAGTTGTAGAACTCTAGAAGTCGTGACAATGTTTATAGGTTTAAAAGAA
261 AAAGATCCATGTGAACTAGTTGTAGAACTCTAGAAGTCGTGACAATGTTTATAGGTTTAAAAGAA
627819 TTTCTTTTATGCTTACCTTTAACACATGCATCACAAACTCTATCACAATCAAATTTGACCTTAGG
326 TTTCTTTTATGCTTACCTTTAACACATGCATCACAAACTCTATCACAATCAAATTTGACCTTAGG
627884 TAATCCAATTACGAGATTTTTCTTAGATAACTTAAAAAGTACGCTCATACTTGCATGTCCTACTT
391 TAATCCAATTACGAGATTTTTCTTAGATAACTTAAAAAGTACGCTCATACTTGCATGTCCTACTT
* *
627949 TTCGGTGCCATAGCCAAGGTATGCCATTGTTGCCGGCACCAAAACATACGTTTTGGGAACTTAAA
456 TTCGGTGCCATAGCCAAGGTATGTCATTGTTGCCGGCAACAAAACATACGTTTTGGGAACTTAAA
628014 ACATCTAAATGTACAACATAAATGTTCCCTTCCCTATGGCCTAAGAAAATTGTTTTATTACTACA
521 ACATCTAAATGTACAACATAAATGTTCCCTTCCCTATGGCCTAAGAAAATTGTTTTATTACTACA
628079 AAC
586 AAC
*
628082 AGCAAAGAAATTATGGCTAATTCCGTTATCATTACAAAATTTATCAAAACCAAGGTTTTCAAATT
1 AGCAAAGAAATTATGGCTAATACCGTTATCATTACAAAATTTATCAAAACCAAGGTTTTCAAATT
628147 CTCTTCCGTGATCACTTCTTATACTAGATAAGGAGTAACCTTTTTCATTTTGAACTATTTTACAA
66 CTCTTCCGTGATCACTTCTTATACTAGATAAGGAGTAACCTTTTTCATTTTGAACTATTTTACAA
628212 AACGTGATGAATTTTTCTAAAGCTTCATCTTTAGTGCTTAAAAATAAAACCCAAGTGTATCTTGA
131 AACGTGATGAATTTTTCTAAAGCTTCATCTTTAGTGCTTAAAAATAAAACCCAAGTGTATCTTGA
*
628277 ATAATCATCCACAATGACAAATCCATATCTTTTTCCTCCTAGACTATGCGTTCTAGTTGGACCAA
196 ATAATCATCCACAATGACAAATCCATATCTTTTTCCTCCTAGACTTTGCGTTCTAGTTGGACCAA
628342 AAAGATCCATGTGAACTAGTTGTAGAACTCTAGAAGTCGTGACAATGTTTATAGGTTTAAAAGAA
261 AAAGATCCATGTGAACTAGTTGTAGAACTCTAGAAGTCGTGACAATGTTTATAGGTTTAAAAGAA
628407 TTTCTTTTATGCTTACCTTTAACACATGCATCACAAACTCTATCACAATCAAATTTGACCTTAGG
326 TTTCTTTTATGCTTACCTTTAACACATGCATCACAAACTCTATCACAATCAAATTTGACCTTAGG
*
628472 TAATCCAATTACGAGATTCTTCTTAGATAACTTAAAAAGTACGCTCATACTTGCATGTCCTACTT
391 TAATCCAATTACGAGATTTTTCTTAGATAACTTAAAAAGTACGCTCATACTTGCATGTCCTACTT
*
628537 TTCGGTGCCATAGCCAAGGTATGTCATTGTTGCCGGCACCAAAACATACGTTTTGGGAACTTAAA
456 TTCGGTGCCATAGCCAAGGTATGTCATTGTTGCCGGCAACAAAACATACGTTTTGGGAACTTAAA
628602 ACATCTAAATGTACAACATAAATGTTCCCTTCCCTATGGCCTAAGAAAATTGTTTTATTACTACA
521 ACATCTAAATGTACAACATAAATGTTCCCTTCCCTATGGCCTAAGAAAATTGTTTTATTACTACA
628667 AAC
586 AAC
*
628670 AGCAAAGAAATTATGGCTAATTCCGTTATCATTACAAAATTTATCAAAACCAAGGTTTTCAAATT
1 AGCAAAGAAATTATGGCTAATACCGTTATCATTACAAAATTTATCAAAACCAAGGTTTTCAAATT
628735 CTCTTCCGTGATCACTTCTTATACTAGATAAGGAGTAACCTTTTTCATTTTGAACTATTTTACAA
66 CTCTTCCGTGATCACTTCTTATACTAGATAAGGAGTAACCTTTTTCATTTTGAACTATTTTACAA
628800 AACGTGATGAATTTTTCTAAAGCTTCATCTTTAGTGCTTAAAAATAAAACCCAAGTGTATCTTGA
131 AACGTGATGAATTTTTCTAAAGCTTCATCTTTAGTGCTTAAAAATAAAACCCAAGTGTATCTTGA
*
628865 ATAATCATCCACAATGACAAATCCATATCTTTTTCCTCCTAGACTATGCGTTCTAGTTGGACCAA
196 ATAATCATCCACAATGACAAATCCATATCTTTTTCCTCCTAGACTTTGCGTTCTAGTTGGACCAA
628930 AAAGATCCATGTGAACTAGTTGTAGAACTCTAGAAGTCGTGACAATGTTTATAGGTTTAAAAGAA
261 AAAGATCCATGTGAACTAGTTGTAGAACTCTAGAAGTCGTGACAATGTTTATAGGTTTAAAAGAA
628995 TTTCTTTTATGCTTACCTTTAACACATGCATCACAAACTCTATCACAATCAAATTTGACCTTAGG
326 TTTCTTTTATGCTTACCTTTAACACATGCATCACAAACTCTATCACAATCAAATTTGACCTTAGG
629060 TAATCCAATTACGAGATTTTTCTTAGATAACTTAAAAAGTACGCTCATACTTGCATGTCCTACTT
391 TAATCCAATTACGAGATTTTTCTTAGATAACTTAAAAAGTACGCTCATACTTGCATGTCCTACTT
629125 TTCGGTGCCATAGCCAAGGTATGTCATTGTTGCCGGCAACAAAACATACGTTTTGGGAACTTAAA
456 TTCGGTGCCATAGCCAAGGTATGTCATTGTTGCCGGCAACAAAACATACGTTTTGGGAACTTAAA
*
629190 ACATCTAAATGTACAACATAAATGTTCACTTCCCTATGGCCTAAGAAAATTGTTTTATTACTACA
521 ACATCTAAATGTACAACATAAATGTTCCCTTCCCTATGGCCTAAGAAAATTGTTTTATTACTACA
629255 AAC
586 AAC
*
629258 AGCAAAGAAATTATGGCTAATTCCGTTATCATTACAAAATTTATCAAAACCAAGGTTTTCAAATT
1 AGCAAAGAAATTATGGCTAATACCGTTATCATTACAAAATTTATCAAAACCAAGGTTTTCAAATT
629323 CTCTTCCGTGATCACTTCTTATACTAGATAAGGAGTAACCTTTTTCATTTTGAACTATTTTACAA
66 CTCTTCCGTGATCACTTCTTATACTAGATAAGGAGTAACCTTTTTCATTTTGAACTATTTTACAA
*
629388 AACATGATGAATTTTTCTAAAGCTTCATCTTTAGTGCTTAAAAATAAAACCCAAGTGTATCTTGA
131 AACGTGATGAATTTTTCTAAAGCTTCATCTTTAGTGCTTAAAAATAAAACCCAAGTGTATCTTGA
*
629453 ATAATCATCCACAATGACAAATCCATATCTTTTTCCTCCTAGACTTTGCATTCTAGTTGGACCAA
196 ATAATCATCCACAATGACAAATCCATATCTTTTTCCTCCTAGACTTTGCGTTCTAGTTGGACCAA
629518 AAAGATCCATGTGAACTAGTTGTAGAACTCTAGAAGTCGTGACAATGTTTATAGGTTTAAAAGAA
261 AAAGATCCATGTGAACTAGTTGTAGAACTCTAGAAGTCGTGACAATGTTTATAGGTTTAAAAGAA
629583 TTTCTTTTATGCTTACCTTTAACACATGCATCACAAACTCTATCACAATCAAATTTGACCTTAGG
326 TTTCTTTTATGCTTACCTTTAACACATGCATCACAAACTCTATCACAATCAAATTTGACCTTAGG
629648 TAATCCAATTACGAGATTTTTCTTAGATAACTTAAAAAGTACGCTCATACTTGCATGTCCTACTT
391 TAATCCAATTACGAGATTTTTCTTAGATAACTTAAAAAGTACGCTCATACTTGCATGTCCTACTT
629713 TTCGGTGCCATAGCCAAGGTATGTCATTGTTGCCGGCAACAAAACATACGTTTTGGGAACTTAAA
456 TTCGGTGCCATAGCCAAGGTATGTCATTGTTGCCGGCAACAAAACATACGTTTTGGGAACTTAAA
*
629778 ACATCTAAATGTACAACATAAATGTTCACTTCCCTATGGCCTAAGAAAATTGTTTTATTACTACA
521 ACATCTAAATGTACAACATAAATGTTCCCTTCCCTATGGCCTAAGAAAATTGTTTTATTACTACA
629843 AAC
586 AAC
*
629846 AGCAAAGAAATTATGGCTAATTCCGTTATCATTACAAAATTTATCAAAACCAAGGTTTTCAAATT
1 AGCAAAGAAATTATGGCTAATACCGTTATCATTACAAAATTTATCAAAACCAAGGTTTTCAAATT
629911 CTCTTCCGTGATCACTTCTTATACTAGATAAGGAGTAACCTTTTTCATTTTGAACTATTTTACAA
66 CTCTTCCGTGATCACTTCTTATACTAGATAAGGAGTAACCTTTTTCATTTTGAACTATTTTACAA
629976 AACGTGATGAATTTTTCTAAAGCTTCATCTTTAGTGCTTAAAAATAAAACCCAAGTGTATCTTGA
131 AACGTGATGAATTTTTCTAAAGCTTCATCTTTAGTGCTTAAAAATAAAACCCAAGTGTATCTTGA
*
630041 ATAATCATCCACAATGACAAATCCATATCTTTTTCCTCCTAGACTTTGCATTCTAGTTGGACCAA
196 ATAATCATCCACAATGACAAATCCATATCTTTTTCCTCCTAGACTTTGCGTTCTAGTTGGACCAA
*
630106 AAAGATCCATGTGAACTAGTTATAGAACTCTAGAAGTCGTGACAATGTTTATAGGTTTAAAAGAA
261 AAAGATCCATGTGAACTAGTTGTAGAACTCTAGAAGTCGTGACAATGTTTATAGGTTTAAAAGAA
630171 TTTCTTTTATGCTTACCTTTAACACATGCATCACAAACTCTATCACAATCAAATTTGACCTTAGG
326 TTTCTTTTATGCTTACCTTTAACACATGCATCACAAACTCTATCACAATCAAATTTGACCTTAGG
630236 TAATCCAATTACGAGATTTTTCTTAGATAACTTAAAAAGTACGCTCATACTTGCATGTCCTACTT
391 TAATCCAATTACGAGATTTTTCTTAGATAACTTAAAAAGTACGCTCATACTTGCATGTCCTACTT
630301 TTCGGTGCCATAGCCAAGGTATGTCATTGTTGCCGGCAACAAAACATACGTTTTGGGAACTTAAA
456 TTCGGTGCCATAGCCAAGGTATGTCATTGTTGCCGGCAACAAAACATACGTTTTGGGAACTTAAA
630366 ACATCTAAAT-TACAACATAAATGTTCCCTTCCCTATGGCCTAAGAAAATTGTTTTATTACTACA
521 ACATCTAAATGTACAACATAAATGTTCCCTTCCCTATGGCCTAAGAAAATTGTTTTATTACTACA
630430 AAC
586 AAC
630433 AGCAAAGAAATTATGGCTAATACCGTTATCATTACAAAATTTATCAAAACCAAGGTTTTCAAATT
1 AGCAAAGAAATTATGGCTAATACCGTTATCATTACAAAATTTATCAAAACCAAGGTTTTCAAATT
630498 CTCTTCCGTGATCACTTCTTATACTAGATAAGGAGTAACCTTTTTCATTTTGAACTATTTTACAA
66 CTCTTCCGTGATCACTTCTTATACTAGATAAGGAGTAACCTTTTTCATTTTGAACTATTTTACAA
630563 AACGTGATGAATTTTTCTAAAGCTTCATCTTTAGTGCTTAAAAATAAAACCCAAGTGTATCTTGA
131 AACGTGATGAATTTTTCTAAAGCTTCATCTTTAGTGCTTAAAAATAAAACCCAAGTGTATCTTGA
*
630628 ATAATCATCCACAATGACAAATCCATATCTTTTTCCTCCTAGACTTTGTGTTCTAGTTGGACCAA
196 ATAATCATCCACAATGACAAATCCATATCTTTTTCCTCCTAGACTTTGCGTTCTAGTTGGACCAA
630693 AAAGATCCATGTGAACTAGTTGTAGAACTCTAGAAGTCGTGACAATGTTTATAGGTTTAAAAGAA
261 AAAGATCCATGTGAACTAGTTGTAGAACTCTAGAAGTCGTGACAATGTTTATAGGTTTAAAAGAA
*
630758 TTTCTTTTATGCTTACCTTTAACACATGCATCACAAACTCTATCGCAATCAAATTTGACCTTAGG
326 TTTCTTTTATGCTTACCTTTAACACATGCATCACAAACTCTATCACAATCAAATTTGACCTTAGG
* *
630823 TAATCCAATTACGAGATTTTTCTTAGATAACTTAGAGAGTACGCTCATACTTGCATGTCCTACTT
391 TAATCCAATTACGAGATTTTTCTTAGATAACTTAAAAAGTACGCTCATACTTGCATGTCCTACTT
* * *
630888 TTCGGTGCCATAGCTAAGGTATGTCATTCTTGTCGGCAACAAAACATACGTTTTGGGAACTTAAA
456 TTCGGTGCCATAGCCAAGGTATGTCATTGTTGCCGGCAACAAAACATACGTTTTGGGAACTTAAA
*
630953 ACATCTAAATGTACAACATTAATGTTCCCTTCCCTATGGCCTAAGAAAATTGTTTTATTACTACA
521 ACATCTAAATGTACAACATAAATGTTCCCTTCCCTATGGCCTAAGAAAATTGTTTTATTACTACA
631018 AAC
586 AAC
631021 A
1 A
631022 TCAATTACAT
Statistics
Matches: 4080, Mismatches: 35, Indels: 2
0.99 0.01 0.00
Matches are distributed among these distances:
587 576 0.14
588 3504 0.86
ACGTcount: A:0.34, C:0.19, G:0.13, T:0.34
Consensus pattern (588 bp):
AGCAAAGAAATTATGGCTAATACCGTTATCATTACAAAATTTATCAAAACCAAGGTTTTCAAATT
CTCTTCCGTGATCACTTCTTATACTAGATAAGGAGTAACCTTTTTCATTTTGAACTATTTTACAA
AACGTGATGAATTTTTCTAAAGCTTCATCTTTAGTGCTTAAAAATAAAACCCAAGTGTATCTTGA
ATAATCATCCACAATGACAAATCCATATCTTTTTCCTCCTAGACTTTGCGTTCTAGTTGGACCAA
AAAGATCCATGTGAACTAGTTGTAGAACTCTAGAAGTCGTGACAATGTTTATAGGTTTAAAAGAA
TTTCTTTTATGCTTACCTTTAACACATGCATCACAAACTCTATCACAATCAAATTTGACCTTAGG
TAATCCAATTACGAGATTTTTCTTAGATAACTTAAAAAGTACGCTCATACTTGCATGTCCTACTT
TTCGGTGCCATAGCCAAGGTATGTCATTGTTGCCGGCAACAAAACATACGTTTTGGGAACTTAAA
ACATCTAAATGTACAACATAAATGTTCCCTTCCCTATGGCCTAAGAAAATTGTTTTATTACTACA
AAC
Found at i:634023 original size:32 final size:32
Alignment explanation
Indices: 633977--634043 Score: 100
Period size: 32 Copynumber: 2.1 Consensus size: 32
633967 CGTTACAAGC
* *
633977 CAATGTATCGATACATTTTG-GATGTATCGATA
1 CAATGTATCAATACATATTGTG-TGTATCGATA
634009 CAATGTATCAATACATATTGTGTGTATCGATA
1 CAATGTATCAATACATATTGTGTGTATCGATA
634041 CAA
1 CAA
634044 ACAATTAAGG
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
32 31 0.97
33 1 0.03
ACGTcount: A:0.34, C:0.13, G:0.16, T:0.36
Consensus pattern (32 bp):
CAATGTATCAATACATATTGTGTGTATCGATA
Found at i:634131 original size:20 final size:21
Alignment explanation
Indices: 634084--634134 Score: 68
Period size: 20 Copynumber: 2.5 Consensus size: 21
634074 ACCAATGACC
**
634084 TGTATCGATACATTCTTTTCA
1 TGTATCGATACATTCTGGTCA
*
634105 AGTATCGATACATT-TGGTCA
1 TGTATCGATACATTCTGGTCA
634125 TGTATCGATA
1 TGTATCGATA
634135 TAATGTATCG
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
20 13 0.50
21 13 0.50
ACGTcount: A:0.27, C:0.16, G:0.16, T:0.41
Consensus pattern (21 bp):
TGTATCGATACATTCTGGTCA
Found at i:636576 original size:14 final size:13
Alignment explanation
Indices: 636555--636588 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
636545 CATTTTCTTC
636555 TTTTTTTTTACTT
1 TTTTTTTTTACTT
*
636568 TTGTTTTTTACTT
1 TTTTTTTTTACTT
636581 TTTTTTTT
1 TTTTTTTT
636589 GTTTTTTTCT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.06, C:0.06, G:0.03, T:0.85
Consensus pattern (13 bp):
TTTTTTTTTACTT
Found at i:636582 original size:19 final size:19
Alignment explanation
Indices: 636560--636601 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
636550 TCTTCTTTTT
636560 TTTTACTTTTGTTTTTTAC
1 TTTTACTTTTGTTTTTTAC
** *
636579 TTTTTTTTTTGTTTTTTTC
1 TTTTACTTTTGTTTTTTAC
636598 TTTT
1 TTTT
636602 GCCTTTTCTA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.05, C:0.07, G:0.05, T:0.83
Consensus pattern (19 bp):
TTTTACTTTTGTTTTTTAC
Found at i:636992 original size:13 final size:14
Alignment explanation
Indices: 636970--637020 Score: 86
Period size: 14 Copynumber: 3.6 Consensus size: 14
636960 ATTTTTGTTT
636970 TTTTGTTTTTGTAC
1 TTTTGTTTTTGTAC
636984 TTTTGTTTTTGTAC
1 TTTTGTTTTTGTAC
636998 TTTTG-TTTTGTAC
1 TTTTGTTTTTGTAC
637011 TTTTGGTTTT
1 TTTT-GTTTT
637021 ACCCTTTTTC
Statistics
Matches: 35, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
13 12 0.34
14 20 0.57
15 3 0.09
ACGTcount: A:0.06, C:0.06, G:0.16, T:0.73
Consensus pattern (14 bp):
TTTTGTTTTTGTAC
Found at i:637001 original size:22 final size:22
Alignment explanation
Indices: 636962--637003 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
636952 ATGTCTCAAT
* **
636962 TTTTGTTTTTTTGTTTTTGTAC
1 TTTTGTTTTTGTACTTTTGTAC
636984 TTTTGTTTTTGTACTTTTGT
1 TTTTGTTTTTGTACTTTTGT
637004 TTTGTACTTT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.05, C:0.05, G:0.14, T:0.76
Consensus pattern (22 bp):
TTTTGTTTTTGTACTTTTGTAC
Found at i:637027 original size:27 final size:28
Alignment explanation
Indices: 636970--637028 Score: 75
Period size: 27 Copynumber: 2.1 Consensus size: 28
636960 ATTTTTGTTT
* **
636970 TTTTGTTTTTGTACTTTTGTTTTTGTAC
1 TTTTGTTTTTGTACTTTTGGTTTTACAC
*
636998 TTTTG-TTTTGTACTTTTGGTTTTACCC
1 TTTTGTTTTTGTACTTTTGGTTTTACAC
637025 TTTT
1 TTTT
637029 TCCTTTTCTT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
27 22 0.81
28 5 0.19
ACGTcount: A:0.07, C:0.10, G:0.14, T:0.69
Consensus pattern (28 bp):
TTTTGTTTTTGTACTTTTGGTTTTACAC
Found at i:639676 original size:21 final size:20
Alignment explanation
Indices: 639650--639688 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
639640 AGGTCAAAAC
639650 CCTAGAAAGTATCGATACACA
1 CCTAG-AAGTATCGATACACA
*
639671 CCTAGATGTATCGATACA
1 CCTAGAAGTATCGATACA
639689 TATTGCTTTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.23
Consensus pattern (20 bp):
CCTAGAAGTATCGATACACA
Found at i:639700 original size:20 final size:19
Alignment explanation
Indices: 639677--639727 Score: 75
Period size: 20 Copynumber: 2.6 Consensus size: 19
639667 CACACCTAGA
639677 TGTATCGATACATATTGCTT
1 TGTATCGATACATATT-CTT
*
639697 TGTATCGATACATGTTCTT
1 TGTATCGATACATATTCTT
*
639716 GGTATCGATACA
1 TGTATCGATACA
639728 CAGTGAATTG
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
19 14 0.48
20 15 0.52
ACGTcount: A:0.25, C:0.16, G:0.18, T:0.41
Consensus pattern (19 bp):
TGTATCGATACATATTCTT
Found at i:639722 original size:19 final size:20
Alignment explanation
Indices: 639678--639727 Score: 75
Period size: 19 Copynumber: 2.5 Consensus size: 20
639668 ACACCTAGAT
*
639678 GTATCGATACATATTGCTTT
1 GTATCGATACATATTGCTTG
*
639698 GTATCGATACATGTT-CTTG
1 GTATCGATACATATTGCTTG
639717 GTATCGATACA
1 GTATCGATACA
639728 CAGTGAATTG
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
19 14 0.50
20 14 0.50
ACGTcount: A:0.26, C:0.16, G:0.18, T:0.40
Consensus pattern (20 bp):
GTATCGATACATATTGCTTG
Found at i:642248 original size:79 final size:79
Alignment explanation
Indices: 642141--642346 Score: 245
Period size: 78 Copynumber: 2.6 Consensus size: 79
642131 GAGATAATAA
* * * * * * *
642141 CGGGGTTGGAGTGTCCCCTTGAAAATAACGGGGCTGGAGTATCCCCGGTTGTGAGAAATCGATGA
1 CGGGGTTGGAGTATCCCCTCGGAAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATCAAT-A
*
642206 -TTAGAAAAAAAAAT
65 TTTAGAAAAAAAAAC
* *
642220 CGGGATTGGAGTATCCCCTCGGAAATAACGGGGTTGGAGTAT-CCCAATTATGAGAAATCAATAT
1 CGGGGTTGGAGTATCCCCTCGGAAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATCAATAT
* * * *
642284 TTTGAGAATAAAGC
66 TTAGAAAAAAAAAC
**
642298 CGGGGTTGGAGTATCCCCTCGGAGGTAACGGGGTTGGAGTATCCCCGAT
1 CGGGGTTGGAGTATCCCCTCGGAAATAACGGGGTTGGAGTATCCCCGAT
642347 GAAATAACGA
Statistics
Matches: 107, Mismatches: 18, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
77 1 0.01
78 64 0.60
79 42 0.39
ACGTcount: A:0.29, C:0.17, G:0.31, T:0.24
Consensus pattern (79 bp):
CGGGGTTGGAGTATCCCCTCGGAAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATCAATAT
TTAGAAAAAAAAAC
Found at i:642317 original size:78 final size:77
Alignment explanation
Indices: 642111--642342 Score: 243
Period size: 78 Copynumber: 2.9 Consensus size: 77
642101 ATATTTCCTG
* * * * *
642111 ATGAGAAATTTAATATTTTG-GAGATAATAACGGGGTTGGAGTGTCCCCTTGAAAATAACGGGGC
1 ATGAGAAA-TCAATATTTTGAGA-ATAA-AACGGGGTTGGAGTATCCCCTCGGAAATAACGGGGT
**
642175 TGGAGTATCCCCGGTT
63 TGGAGTAT-CCCAATT
* * * * * *
642191 GTGAGAAATCGATGA-TTAGAAAAAAAAATCGGGATTGGAGTATCCCCTCGGAAATAACGGGGTT
1 ATGAGAAATCAAT-ATTTTGAGAATAAAA-CGGGGTTGGAGTATCCCCTCGGAAATAACGGGGTT
642255 GGAGTATCCCAATT
64 GGAGTATCCCAATT
* **
642269 ATGAGAAATCAATATTTTGAGAATAAAGCCGGGGTTGGAGTATCCCCTCGGAGGTAACGGGGTTG
1 ATGAGAAATCAATATTTTGAGAATAAA-ACGGGGTTGGAGTATCCCCTCGGAAATAACGGGGTTG
642334 GAGTATCCC
65 GAGTATCCC
642343 CGATGAAATA
Statistics
Matches: 125, Mismatches: 22, Indels: 12
0.79 0.14 0.08
Matches are distributed among these distances:
77 1 0.01
78 69 0.55
79 46 0.37
80 9 0.07
ACGTcount: A:0.31, C:0.15, G:0.29, T:0.25
Consensus pattern (77 bp):
ATGAGAAATCAATATTTTGAGAATAAAACGGGGTTGGAGTATCCCCTCGGAAATAACGGGGTTGG
AGTATCCCAATT
Found at i:642354 original size:28 final size:28
Alignment explanation
Indices: 642298--642369 Score: 81
Period size: 28 Copynumber: 2.6 Consensus size: 28
642288 AGAATAAAGC
** **
642298 CGGGGTTGGAGTATCCCCTCGGAGGTAA
1 CGGGGTTGGAGTATCCCCGAGGAAATAA
*
642326 CGGGGTTGGAGTATCCCCGATGAAATAA
1 CGGGGTTGGAGTATCCCCGAGGAAATAA
* *
642354 CGAGGTTAGAGTATCC
1 CGGGGTTGGAGTATCC
642370 TTAATTGTGA
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 37 1.00
ACGTcount: A:0.24, C:0.19, G:0.35, T:0.22
Consensus pattern (28 bp):
CGGGGTTGGAGTATCCCCGAGGAAATAA
Found at i:642447 original size:52 final size:51
Alignment explanation
Indices: 642380--642526 Score: 170
Period size: 51 Copynumber: 2.8 Consensus size: 51
642370 TTAATTGTGA
* * ** *
642380 AAAATTGGTATTTTTGGAAATAAAATCGAAGTTGGAGTATCCCTGATTAAAGG
1 AAAATTGGT-GTTTTGGAAATAAAACCGGGGTTGGAGTATCCCCGATT-AAGG
* * **
642433 AAAATTGGTGTTTTGAAAATAAAGCCGGGGTTGGAGTATCCCCGATTGTGG
1 AAAATTGGTGTTTTGGAAATAAAACCGGGGTTGGAGTATCCCCGATTAAGG
*
642484 AAAA-TGGATGATTTGGAAATAAAACCGGGGTTGGAGTATCCCC
1 AAAATTGG-TGTTTTGGAAATAAAACCGGGGTTGGAGTATCCCC
642527 TCGGAGATAA
Statistics
Matches: 81, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
50 3 0.04
51 38 0.47
52 31 0.38
53 9 0.11
ACGTcount: A:0.33, C:0.11, G:0.27, T:0.29
Consensus pattern (51 bp):
AAAATTGGTGTTTTGGAAATAAAACCGGGGTTGGAGTATCCCCGATTAAGG
Found at i:642551 original size:183 final size:183
Alignment explanation
Indices: 642326--642788 Score: 712
Period size: 183 Copynumber: 2.5 Consensus size: 183
642316 TCGGAGGTAA
*** * * * ** *
642326 CGGGGTTGGAGTATCCCCGATGAAATAACGAGGTTAGAGTATCCTTAATTGTGAAAAATTGGTAT
1 CGGGGTTGGAGTATCCCCTCGGAGATAACGGGGTTGGAGTATCCCCAATTATGAAAAATTGGTAT
*
642391 TTTTGGAAATAAAATCGAAGTTGGAGTATCCCTGATTAAAGGAAAATTGGTGTTTTGAAAATAAA
66 TTTTGGAAATAAAATCGAAGTTGGAGTATCCCCGATTAAAGGAAAATTGGTGTTTTGAAAATAAA
642456 GCCGGGGTTGGAGTATCCCCGATTGTGGAAAATGGATGATTTGGAAATAAAAC
131 GCCGGGGTTGGAGTATCCCCGATTGTGGAAAATGGATGATTTGGAAATAAAAC
* * *
642509 CGGGGTTGGAGTATCCCCTCGGAGATAACGGGGTTGGAGTATCCCCGATTATGAGAAATTGGTGT
1 CGGGGTTGGAGTATCCCCTCGGAGATAACGGGGTTGGAGTATCCCCAATTATGAAAAATTGGTAT
*
642574 TTTTGGAAATAAAATCGGAGTTGGAGTATCCCCGATTAAAGGAAAATTGGTGTTTTGAAAATAAA
66 TTTTGGAAATAAAATCGAAGTTGGAGTATCCCCGATTAAAGGAAAATTGGTGTTTTGAAAATAAA
642639 GCCGGGGTTGGAGTATCCCCGATTGTGGAAAATGGATGATTTGGAAATAAAAC
131 GCCGGGGTTGGAGTATCCCCGATTGTGGAAAATGGATGATTTGGAAATAAAAC
* * **
642692 CGGGGTTGGAGTATCCCCTCGGAGATAACGGGGTTGGAGTATCCCCGATTATGAGAAATTAATA-
1 CGGGGTTGGAGTATCCCCTCGGAGATAACGGGGTTGGAGTATCCCCAATTATGAAAAATTGGTAT
* * * **
642756 TTTTAGAAATAAAGTTGGGGTTGGAGTATCCCC
66 TTTTGGAAATAAAATCGAAGTTGGAGTATCCCC
642789 TCGAAAATAA
Statistics
Matches: 259, Mismatches: 21, Indels: 1
0.92 0.07 0.00
Matches are distributed among these distances:
182 29 0.11
183 230 0.89
ACGTcount: A:0.31, C:0.12, G:0.29, T:0.28
Consensus pattern (183 bp):
CGGGGTTGGAGTATCCCCTCGGAGATAACGGGGTTGGAGTATCCCCAATTATGAAAAATTGGTAT
TTTTGGAAATAAAATCGAAGTTGGAGTATCCCCGATTAAAGGAAAATTGGTGTTTTGAAAATAAA
GCCGGGGTTGGAGTATCCCCGATTGTGGAAAATGGATGATTTGGAAATAAAAC
Found at i:642578 original size:131 final size:132
Alignment explanation
Indices: 642410--642658 Score: 344
Period size: 131 Copynumber: 1.9 Consensus size: 132
642400 TAAAATCGAA
* * *
642410 GTTGGAGTATCCCTGATTAAAGGAAAATTGGTGTTTTGAAAATAAAGCCGGGGTTGGAGTATCCC
1 GTTGGAGTATCCCCGATTAAAGGAAAATTGGTGTTTTGAAAATAAAACCGGAGTTGGAGTATCCC
** *
642475 CGATT-GTGGAAAA-TGGATGATTTGGAAATAAAACCGGGGTTGGAGTATCCCCTCGGAGATAAC
66 CGATTAAAGGAAAATTGG-TGATTTGAAAATAAAACCGGGGTTGGAGTATCCCCTCGGAGATAAC
642538 GGG
130 GGG
* * *
642541 GTTGGAGTATCCCCGATT--ATGAGAAATTGGTGTTTTTGGAAATAAAATCGGAGTTGGAGTATC
1 GTTGGAGTATCCCCGATTAAAGGA-AAATTGGTG-TTTTGAAAATAAAACCGGAGTTGGAGTATC
* *
642604 CCCGATTAAAGGAAAATTGGTGTTTTGAAAATAAAGCCGGGGTTGGAGTATCCCC
64 CCCGATTAAAGGAAAATTGGTGATTTGAAAATAAAACCGGGGTTGGAGTATCCCC
642659 GATTGTGGAA
Statistics
Matches: 103, Mismatches: 11, Indels: 7
0.85 0.09 0.06
Matches are distributed among these distances:
129 3 0.03
130 9 0.09
131 50 0.49
132 38 0.37
133 3 0.03
ACGTcount: A:0.30, C:0.13, G:0.30, T:0.28
Consensus pattern (132 bp):
GTTGGAGTATCCCCGATTAAAGGAAAATTGGTGTTTTGAAAATAAAACCGGAGTTGGAGTATCCC
CGATTAAAGGAAAATTGGTGATTTGAAAATAAAACCGGGGTTGGAGTATCCCCTCGGAGATAACG
GG
Found at i:642601 original size:80 final size:79
Alignment explanation
Indices: 642458--642606 Score: 228
Period size: 80 Copynumber: 1.9 Consensus size: 79
642448 AAAATAAAGC
* *
642458 CGGGGTTGGAGTATCCCCGATTGTGGAAAATGGATGATTTGGAAATAAAACCGGGGTTGGAGTAT
1 CGGGGTTGGAGTATCCCCGATTATGGAAAATGGATGATTTGGAAATAAAACCGGAGTTGGAGTAT
642523 CCCCTCGGAGATAA
66 CCCCTCGGAGATAA
* * *
642537 CGGGGTTGGAGTATCCCCGATTATGAGAAATTGG-TGTTTTTGGAAATAAAATCGGAGTTGGAGT
1 CGGGGTTGGAGTATCCCCGATTATG-GAAAATGGATG-ATTTGGAAATAAAACCGGAGTTGGAGT
642601 ATCCCC
64 ATCCCC
642607 GATTAAAGGA
Statistics
Matches: 63, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
79 26 0.41
80 37 0.59
ACGTcount: A:0.27, C:0.15, G:0.32, T:0.27
Consensus pattern (79 bp):
CGGGGTTGGAGTATCCCCGATTATGGAAAATGGATGATTTGGAAATAAAACCGGAGTTGGAGTAT
CCCCTCGGAGATAA
Found at i:642695 original size:51 final size:50
Alignment explanation
Indices: 642537--642709 Score: 229
Period size: 52 Copynumber: 3.4 Consensus size: 50
642527 TCGGAGATAA
* *
642537 CGGGGTTGGAGTATCCCCGATTATGAGAAATTGGTGTTTTTGGAAATAAAAT
1 CGGGGTTGGAGTATCCCCGATTATG-GAAAATGGTG-TTTTGGAAATAAAAC
* * * *
642589 CGGAGTTGGAGTATCCCCGATTAAAGGAAAATTGGTGTTTTGAAAATAAAGC
1 CGGGGTTGGAGTATCCCCGATT-ATGGAAAA-TGGTGTTTTGGAAATAAAAC
* *
642641 CGGGGTTGGAGTATCCCCGATTGTGGAAAATGGATGATTTGGAAATAAAAC
1 CGGGGTTGGAGTATCCCCGATTATGGAAAATGG-TGTTTTGGAAATAAAAC
642692 CGGGGTTGGAGTATCCCC
1 CGGGGTTGGAGTATCCCC
642710 TCGGAGATAA
Statistics
Matches: 106, Mismatches: 12, Indels: 7
0.85 0.10 0.06
Matches are distributed among these distances:
50 3 0.03
51 38 0.36
52 58 0.55
53 7 0.07
ACGTcount: A:0.29, C:0.13, G:0.30, T:0.28
Consensus pattern (50 bp):
CGGGGTTGGAGTATCCCCGATTATGGAAAATGGTGTTTTGGAAATAAAAC
Found at i:642978 original size:80 final size:79
Alignment explanation
Indices: 642641--642978 Score: 500
Period size: 79 Copynumber: 4.3 Consensus size: 79
642631 AAAATAAAGC
* ** * *
642641 CGGGGTTGGAGTATCCCCGATTGTG-GAAAATGGATGA-TTTGGAAATAAAACCGGGGTTGGAGT
1 CGGGGTTGGAGTATCCCCGATTATGAG-AAATTAAT-ATTTTAGAAATAAAGCCGGGGTTGGAGT
* *
642704 ATCCCCTCGGAGATAA
64 ATCCCCTCGAAAATAA
**
642720 CGGGGTTGGAGTATCCCCGATTATGAGAAATTAATATTTTAGAAATAAAGTTGGGGTTGGAGTAT
1 CGGGGTTGGAGTATCCCCGATTATGAGAAATTAATATTTTAGAAATAAAGCCGGGGTTGGAGTAT
642785 CCCCTCGAAAATAA
66 CCCCTCGAAAATAA
* *
642799 CGGGGTTGGAGTATCCCCGATTCTGAGAAATTAATATTTTAGAAATAAAGCCAGGGTTGGAGTAT
1 CGGGGTTGGAGTATCCCCGATTATGAGAAATTAATATTTTAGAAATAAAGCCGGGGTTGGAGTAT
642864 CCCCTCGAAAATAA
66 CCCCTCGAAAATAA
* * *
642878 CGGGGTTGGAGTATCCCCGATTATGAGAAATCAATATTTTAGGAATAAAGCTGGGGGTTGGAGTA
1 CGGGGTTGGAGTATCCCCGATTATGAGAAATTAATATTTTAGAAATAAAGC-CGGGGTTGGAGTA
*
642943 TCCCCTTGAAAATAA
65 TCCCCTCGAAAATAA
642958 CGGGGTTGGAGTATCCCCGAT
1 CGGGGTTGGAGTATCCCCGAT
642979 GATTGACGGG
Statistics
Matches: 237, Mismatches: 19, Indels: 5
0.91 0.07 0.02
Matches are distributed among these distances:
78 1 0.00
79 189 0.80
80 47 0.20
ACGTcount: A:0.30, C:0.15, G:0.28, T:0.27
Consensus pattern (79 bp):
CGGGGTTGGAGTATCCCCGATTATGAGAAATTAATATTTTAGAAATAAAGCCGGGGTTGGAGTAT
CCCCTCGAAAATAA
Found at i:642995 original size:27 final size:27
Alignment explanation
Indices: 642931--643008 Score: 104
Period size: 27 Copynumber: 2.9 Consensus size: 27
642921 AATAAAGCTG
*
642931 GGGGTTGGAGTATCCCCTTGA-AAATAAC
1 GGGGTTGGAGTATCCCC--GATGAATAAC
* *
642959 GGGGTTGGAGTATCCCCGATGATTGAC
1 GGGGTTGGAGTATCCCCGATGAATAAC
642986 GGGGTTGGAGTATCCCCGATGAA
1 GGGGTTGGAGTATCCCCGATGAA
643009 AAATTGATGT
Statistics
Matches: 45, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
26 2 0.04
27 26 0.58
28 17 0.38
ACGTcount: A:0.23, C:0.18, G:0.35, T:0.24
Consensus pattern (27 bp):
GGGGTTGGAGTATCCCCGATGAATAAC
Found at i:643079 original size:51 final size:49
Alignment explanation
Indices: 642989--643106 Score: 154
Period size: 51 Copynumber: 2.4 Consensus size: 49
642979 GATTGACGGG
642989 GTTGGAGTATCCCCGA-TGAAAAATTGATGTTTTAGAAATAAAATTGGA
1 GTTGGAGTATCCCCGATTGAAAAATTGATGTTTTAGAAATAAAATTGGA
*
643037 GTTGGAGTATCCCCGATTATAGAAAATT-AGTGTTTT-GAAAATAAAATTGGA
1 GTTGGAGTATCCCCGATT-GA-AAAATTGA-TGTTTTAG-AAATAAAATTGGA
643088 GTTGG-GATATCCCCGATTG
1 GTTGGAG-TATCCCCGATTG
643107 CGGAGAATTG
Statistics
Matches: 62, Mismatches: 2, Indels: 10
0.84 0.03 0.14
Matches are distributed among these distances:
48 16 0.26
49 1 0.02
50 4 0.06
51 41 0.66
ACGTcount: A:0.34, C:0.10, G:0.24, T:0.32
Consensus pattern (49 bp):
GTTGGAGTATCCCCGATTGAAAAATTGATGTTTTAGAAATAAAATTGGA
Found at i:645469 original size:13 final size:13
Alignment explanation
Indices: 645451--645476 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
645441 CAAAGAATAG
645451 ATGTATCGATACA
1 ATGTATCGATACA
645464 ATGTATCGATACA
1 ATGTATCGATACA
645477 CAGAAAAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:645473 original size:34 final size:33
Alignment explanation
Indices: 645430--645496 Score: 107
Period size: 34 Copynumber: 2.0 Consensus size: 33
645420 AACTTCCTAG
*
645430 ATGTATCGATACAAAGAATAGATGTATCGATACA
1 ATGTATCGATACAAAGAA-AAATGTATCGATACA
*
645464 ATGTATCGATACACAGAAAAATGTATCGATACA
1 ATGTATCGATACAAAGAAAAATGTATCGATACA
645497 TTTCCTTGGC
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
33 14 0.45
34 17 0.55
ACGTcount: A:0.45, C:0.13, G:0.16, T:0.25
Consensus pattern (33 bp):
ATGTATCGATACAAAGAAAAATGTATCGATACA
Found at i:645622 original size:21 final size:21
Alignment explanation
Indices: 645596--645651 Score: 94
Period size: 21 Copynumber: 2.7 Consensus size: 21
645586 GTTGAGACCC
645596 TGTATCGATACATTCCACAAA
1 TGTATCGATACATTCCACAAA
*
645617 TGTATCGATACATTCTACAAA
1 TGTATCGATACATTCCACAAA
*
645638 TGTATCGTTACATT
1 TGTATCGATACATT
645652 TGGATAAATT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.34, C:0.20, G:0.11, T:0.36
Consensus pattern (21 bp):
TGTATCGATACATTCCACAAA
Found at i:646770 original size:59 final size:58
Alignment explanation
Indices: 646389--647436 Score: 1177
Period size: 55 Copynumber: 18.3 Consensus size: 58
646379 ATAAAGTGTA
* *
646389 TCCTACTCTTTGAGGACTAAACAGTGCCACCAACTTGTGTGGGCTTT---GAAAA-GCG
1 TCCTGCTCTTTGAGGACTGAA-AGTGCCACCAACTTGTGTGGGCTTTAAAGAAAAGGCG
* * *
646444 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTT-AGTGGGCTTT---G-AAAGGTG
1 TCCTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTAAAGAAAAGGCG
* * * *
646498 TCCTGCTCTTTGGGGACTGAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGCA
1 TCCTGCTCTTTGAGGACTG-AAAGTGCCACCAACTTGTGTGGGCTTT--AAAGAAAAGGCG
*
646559 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT-AAG---AGGTG
1 TCCTGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTAAAGAAAAGGCG
* * * *
646614 TCCTACTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGTAAAGAAAAAGCA
1 TCCTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGC-TT-TAAAGAAAAGGCG
646675 TCCTGCTCTTTGAGGACTGAAATGTGCCACCAACTTGTGTGGGCTTTAAGAGAAAAGGCG
1 TCCTGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTAA-AGAAAAGGCG
* *
646735 TCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTT----AAAAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGTGCCACCAACTTGTGTGGGCTTTAAAGAAAAGGCG
* * * *
646789 TCCTGCTCTTTGGGGACTAGAAAATGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCA
1 TCCTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTT--AAAGAAAAGGCG
646850 TCCTGCTCTTTGAGGACTGAAACGTGCCACCAACTTGTGTGGGCTTTAAGAGAAAAGGCG
1 TCCTGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTAA-AGAAAAGGCG
* *
646910 TCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTT----AAAAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGTGCCACCAACTTGTGTGGGCTTTAAAGAAAAGGCG
* * * *
646964 TCCTCCTCTTTGGGGACTAAAAGGTGCCACCAACTTGTAG-GGGCTTT-AAG---AGGTG
1 TCCTGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGT-GTGGGCTTTAAAGAAAAGGCG
* *
647019 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTT---G-AAAGGTG
1 TCCTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTAAAGAAAAGGCG
* * *
647074 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGACTTTAAA-AGAA----
1 TCCTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTAAAGAAAAGGCG
* *
647128 TCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTT----AAAAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGTGCCACCAACTTGTGTGGGCTTTAAAGAAAAGGCG
* * *
647182 TCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGGGTGGGCTTTAAAAGAAAAGGCA
1 TCCTGCTCTTTGAGGACTGAAAGTGCCACCAACTTGTGTGGGCTTT-AAAGAAAAGGCG
* * *
647241 TCCCGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCA
1 TCCTGCTCTTTGAGGACTGAAAGTGCCACCAACTTGTGTGGGCTTT-AAAGAAAAGGCG
* * *
647300 TCCCGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGTGCCACCAACTTGTGTGGGCTTT-AAAGAAAAGGCG
* *
647359 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGAAAA-GCA
1 TCCTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTT-AAA-GAAAAGGCG
*
647419 TCCTGCTCATTGAGGACT
1 TCCTGCTCTTTGAGGACT
647437 AAAAAGCGGA
Statistics
Matches: 873, Mismatches: 67, Indels: 101
0.84 0.06 0.10
Matches are distributed among these distances:
50 3 0.00
53 30 0.03
54 156 0.18
55 219 0.25
56 12 0.01
57 1 0.00
58 8 0.01
59 190 0.22
60 120 0.14
61 134 0.15
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (58 bp):
TCCTGCTCTTTGAGGACTGAAAGTGCCACCAACTTGTGTGGGCTTTAAAGAAAAGGCG
Found at i:646800 original size:175 final size:172
Alignment explanation
Indices: 646388--647436 Score: 1297
Period size: 175 Copynumber: 6.1 Consensus size: 172
646378 AATAAAGTGT
* * * *
646388 ATCCTACTCTTTGAGGACTAAACAGTGCCACCAACTTGTGTGGGCTTTGAAAA-GCGTCCTGCTC
1 ATCCTGCTCTTTGAGGACTGAA-GGTGCCACCAACTTGTGTGGGCTTT-AAAAGGTGTCCTGCTC
* *
646452 TTTGAGGACTGGAAAATGCCACCAACTT-AGTGGGC-TTT---G-AAAGGTGTCCTGCTCTTTGG
64 TTTGAGGACT-GAAAATGCCACCAACTTGTGTGGGCTTTTAAAGAAAAGGTGTCCTGCTCTTTGA
* *
646511 GGACTGAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGC
128 GGACTG-AAAGTGCCACCAACTTGTGTGGGCTTT-AAAAGAAAAGGC
* *
646558 ATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTGTCCTACTCT
1 ATCCTGCTCTTTGAGGACTG-AAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCT
* **
646623 TTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGTAAAGAAAAAGCATCCTGCTCTTTGA
65 TTGAGGACT-GAAAATGCCACCAACTTGTGTGGGCTTT-TAAAGAAAAGGTGTCCTGCTCTTTGA
*
646688 GGACTGAAATGTGCCACCAACTTGTGTGGGCTTTAAGAGAAAAGGC
128 GGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGC
*
646734 GTCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCTT
1 ATCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCTT
* * * **
646799 TGGGGACTAGAAAATGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGAG
66 TGAGGACT-GAAAATGCCACCAACTTGTGTGGGCTTT-TAAAGAAAAGGTGTCCTGCTCTTTGAG
*
646864 GACTGAAACGTGCCACCAACTTGTGTGGGCTTTAAGAGAAAAGGC
129 GACTGAAA-GTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGC
* *
646909 GTCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGTGTCCTCCTCTT
1 ATCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCTT
*
646974 TGGGGACT-AAAAGGTGCCACCAACTTGTAG-GGGC-TTT-AAG---AGGTGTCCTGCTCTTTGA
66 TGAGGACTGAAAA--TGCCACCAACTTGT-GTGGGCTTTTAAAGAAAAGGTGTCCTGCTCTTTGA
* *
647032 GGACTGGAAAATGCCACCAACTTGTGTGGGCTTT----G-AAAGGT
128 GGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGC
* ** * **
647073 GTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGACTTTAAAA-GAATCCTGCTCT
1 ATCCTGCTCTTTGAGGACT-GAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCT
**
647137 TTGAGGACTGAAGGTGCCACCAACTTGTGTGGGC-TTT----AAAAGGTGTCCTGCTCTTTGAGG
65 TTGAGGACTGAAAATGCCACCAACTTGTGTGGGCTTTTAAAGAAAAGGTGTCCTGCTCTTTGAGG
* *
647197 ACTGAAGGTGCCACCAACTTGGGTGGGCTTTAAAAGAAAAGGC
130 ACTGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGC
* *
647240 ATCCCGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAG-GCATCCC
1 ATCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAG----GTG--TCCT
** *
647304 GCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGTGTCCTGCTCTT
60 GCTCTTTGAGGACTGAAAATGCCACCAACTTGTGTGGGCTTTTAAAGAAAAGGTGTCCTGCTCTT
*
647369 TGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGAAAA-GC
125 TGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTAAAA-GAAAAGGC
*
647418 ATCCTGCTCATTGAGGACT
1 ATCCTGCTCTTTGAGGACT
647437 AAAAAGCGGA
Statistics
Matches: 786, Mismatches: 54, Indels: 70
0.86 0.06 0.08
Matches are distributed among these distances:
162 26 0.03
163 44 0.06
164 41 0.05
165 32 0.04
166 30 0.04
167 22 0.03
169 46 0.06
170 83 0.11
171 9 0.01
172 47 0.06
173 7 0.01
174 2 0.00
175 239 0.30
176 34 0.04
177 71 0.09
178 48 0.06
179 5 0.01
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (172 bp):
ATCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCTT
TGAGGACTGAAAATGCCACCAACTTGTGTGGGCTTTTAAAGAAAAGGTGTCCTGCTCTTTGAGGA
CTGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGC
Found at i:647018 original size:29 final size:28
Alignment explanation
Indices: 646929--647018 Score: 89
Period size: 29 Copynumber: 3.2 Consensus size: 28
646919 TTGAGGACTG
646929 AAGGTGCCACCAACTTGTGTGGGCTTTAA
1 AAGGTGCCACCAACTTGTG-GGGCTTTAA
* *
646958 AAGGTGTCCTCC-TCTT-TGGGGAC--TAA
1 AAGGTG-CCACCAACTTGTGGGG-CTTTAA
646984 AAGGTGCCACCAACTTGTAGGGGCTTTAA
1 AAGGTGCCACCAACTTGT-GGGGCTTTAA
*
647013 GAGGTG
1 AAGGTG
647019 TCCTGCTCTT
Statistics
Matches: 49, Mismatches: 5, Indels: 14
0.72 0.07 0.21
Matches are distributed among these distances:
25 4 0.08
26 12 0.24
27 5 0.10
28 7 0.14
29 17 0.35
30 4 0.08
ACGTcount: A:0.23, C:0.20, G:0.30, T:0.27
Consensus pattern (28 bp):
AAGGTGCCACCAACTTGTGGGGCTTTAA
Found at i:647096 original size:27 final size:27
Alignment explanation
Indices: 647014--647096 Score: 62
Period size: 27 Copynumber: 3.0 Consensus size: 27
647004 GGGCTTTAAG
647014 AGGTGTCCTGCTCTTTGAGGACTGGAA
1 AGGTGTCCTGCTCTTTGAGGACTGGAA
* ** * * * *
647041 A-ATG-CCACCAACTTGTGTGGGCTTTGAA
1 AGGTGTCCTGC-TCTT-TGAGGAC-TGGAA
647069 AGGTGTCCTGCTCTTTGAGGACTGGAA
1 AGGTGTCCTGCTCTTTGAGGACTGGAA
647096 A
1 A
647097 ATGCCACCAA
Statistics
Matches: 37, Mismatches: 14, Indels: 10
0.61 0.23 0.16
Matches are distributed among these distances:
25 3 0.08
26 5 0.14
27 11 0.30
28 10 0.27
29 5 0.14
30 3 0.08
ACGTcount: A:0.22, C:0.19, G:0.30, T:0.29
Consensus pattern (27 bp):
AGGTGTCCTGCTCTTTGAGGACTGGAA
Found at i:647117 original size:27 final size:27
Alignment explanation
Indices: 647032--647118 Score: 70
Period size: 27 Copynumber: 3.2 Consensus size: 27
647022 TGCTCTTTGA
647032 GGACTGGAAAATGCCACCAACTTGTGT
1 GGACTGGAAAATGCCACCAACTTGTGT
* * * ** * *
647059 GGGCTTTGAAAGGTGTCCTGC-TCTT-TGA
1 GGAC-TGGAAA-ATG-CCACCAACTTGTGT
647087 GGACTGGAAAATGCCACCAACTTGTGT
1 GGACTGGAAAATGCCACCAACTTGTGT
647114 GGACT
1 GGACT
647119 TTAAAAGAAT
Statistics
Matches: 41, Mismatches: 14, Indels: 10
0.63 0.22 0.15
Matches are distributed among these distances:
25 3 0.07
26 5 0.12
27 15 0.37
28 10 0.24
29 5 0.12
30 3 0.07
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (27 bp):
GGACTGGAAAATGCCACCAACTTGTGT
Found at i:648425 original size:1 final size:1
Alignment explanation
Indices: 648421--648468 Score: 60
Period size: 1 Copynumber: 48.0 Consensus size: 1
648411 CTTTTCTCTC
* * * *
648421 TTTTTCTTTGTTTTGTTTTTTTGTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
648469 GGAAGAGAAT
Statistics
Matches: 39, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
1 39 1.00
ACGTcount: A:0.00, C:0.02, G:0.06, T:0.92
Consensus pattern (1 bp):
T
Found at i:648445 original size:13 final size:13
Alignment explanation
Indices: 648421--648469 Score: 71
Period size: 13 Copynumber: 3.8 Consensus size: 13
648411 CTTTTCTCTC
*
648421 TTTTTCTTTGTTT
1 TTTTTTTTTGTTT
*
648434 TGTTTTTTTGTTT
1 TTTTTTTTTGTTT
*
648447 TTTTTTTTTTTTT
1 TTTTTTTTTGTTT
648460 TTTTTTTTTG
1 TTTTTTTTTG
648470 GAAGAGAATG
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 31 1.00
ACGTcount: A:0.00, C:0.02, G:0.08, T:0.90
Consensus pattern (13 bp):
TTTTTTTTTGTTT
Found at i:656877 original size:20 final size:20
Alignment explanation
Indices: 656832--656904 Score: 76
Period size: 20 Copynumber: 3.6 Consensus size: 20
656822 AAAGACATAC
*
656832 TGTATCGATACATT-GTAGAA
1 TGTATCGATACATTCATA-AA
* *
656852 TATATCGATACATTCATACA
1 TGTATCGATACATTCATAAA
* * *
656872 TGTATCGATATATTGAAAAA
1 TGTATCGATACATTCATAAA
656892 TGTATCGATACAT
1 TGTATCGATACAT
656905 CAGGGTATGA
Statistics
Matches: 43, Mismatches: 9, Indels: 2
0.80 0.17 0.04
Matches are distributed among these distances:
20 41 0.95
21 2 0.05
ACGTcount: A:0.38, C:0.12, G:0.14, T:0.36
Consensus pattern (20 bp):
TGTATCGATACATTCATAAA
Found at i:656881 original size:40 final size:39
Alignment explanation
Indices: 656827--656904 Score: 111
Period size: 40 Copynumber: 2.0 Consensus size: 39
656817 GGTAAAAAGA
* *
656827 CATACTGTATCGATACATTGTAGAATATATCGATACATT
1 CATACTGTATCGATACATTGAAAAATATATCGATACATT
* *
656866 CATACATGTATCGATATATTGAAAAATGTATCGATACAT
1 CATAC-TGTATCGATACATTGAAAAATATATCGATACAT
656905 CAGGGTATGA
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
39 5 0.15
40 29 0.85
ACGTcount: A:0.38, C:0.14, G:0.13, T:0.35
Consensus pattern (39 bp):
CATACTGTATCGATACATTGAAAAATATATCGATACATT
Found at i:657512 original size:28 final size:28
Alignment explanation
Indices: 657445--658543 Score: 1513
Period size: 28 Copynumber: 38.5 Consensus size: 28
657435 TTAACTTGCA
* *
657445 TGGGCTTTAAAAGGGTGCCACTGACTTGCG
1 TGGGCTTTGAAAGAGTGCCACTGACTT--G
* * **
657475 TGGGCTTTGAAAGAATGCCACTAACTCA
1 TGGGCTTTGAAAGAGTGCCACTGACTTG
* *
657503 TGGGCTTTGAAAG-GTTGCCACTAACTCG
1 TGGGCTTTGAAAGAG-TGCCACTGACTTG
657531 TGGGCTTTGAAAGAGTGCCACTGACTTG
1 TGGGCTTTGAAAGAGTGCCACTGACTTG
*
657559 TGGGCTTTGAAA-AGGTACCACTGACTTGCG
1 TGGGCTTTGAAAGA-GTGCCACTGACTT--G
* * *
657589 TGAGCTTTAAAAAGAGTGCCATTGACTTGTG
1 TGGGCTTT-GAAAGAGTGCCACTGAC-T-TG
* *
657620 TGGGCTTTAAAAGGGTGCCACTGACTTG
1 TGGGCTTTGAAAGAGTGCCACTGACTTG
* * *
657648 TGGGCTTTAAAAGAGTGCCACTCAATTG
1 TGGGCTTTGAAAGAGTGCCACTGACTTG
* *
657676 TGGGCTTCGCAATG-GTGCCACTGACTTG
1 TGGGCTTTG-AAAGAGTGCCACTGACTTG
657704 TGGGCTTTGAAA-AGGTGCCACTGACTTG
1 TGGGCTTTGAAAGA-GTGCCACTGACTTG
* * *
657732 TGGGCTCTGAAAGGGTGCCACTAACTTG
1 TGGGCTTTGAAAGAGTGCCACTGACTTG
*
657760 TGGGCTTTGAAAGGGTGCCACTGACTTG
1 TGGGCTTTGAAAGAGTGCCACTGACTTG
*
657788 TGGGCTTTGAAAAGAATGCCACTGACTTG
1 TGGGCTTTG-AAAGAGTGCCACTGACTTG
657817 TGGGCTTTGAAAGGAGTGCCACTGACTTG
1 TGGGCTTTGAAA-GAGTGCCACTGACTTG
* *
657846 TGGGCTTTGAAAGGGTGCCACTAACTTG
1 TGGGCTTTGAAAGAGTGCCACTGACTTG
*
657874 TGGTCTTTGAAAAGAGTGCCACTGACTTG
1 TGGGCTTTG-AAAGAGTGCCACTGACTTG
657903 TGGGCTTTGAAAGGAGTGCCACTGACTTG
1 TGGGCTTTGAAA-GAGTGCCACTGACTTG
* * *
657932 TGGGCTTTGAAAGGGTGCCACTGAGTTA
1 TGGGCTTTGAAAGAGTGCCACTGACTTG
*
657960 TGGGCTTTGAAAGGGTGCCACTGACTTG
1 TGGGCTTTGAAAGAGTGCCACTGACTTG
*
657988 TGGGCTTTGAAAAGAGTGCCACTGATTTG
1 TGGGCTTTG-AAAGAGTGCCACTGACTTG
*
658017 TGGGATTTGAAAGGAGTGCCACTGACTTG
1 TGGGCTTTGAAA-GAGTGCCACTGACTTG
658046 TGGGCTTTGAAAGGAGTGCCACTGACTTG
1 TGGGCTTTGAAA-GAGTGCCACTGACTTG
* *
658075 TGGGCTTTGAAAGGGTGCCACTAACTTG
1 TGGGCTTTGAAAGAGTGCCACTGACTTG
*
658103 TGGGCTTTGAAAGGAGTGCCATTGACTTG
1 TGGGCTTTGAAA-GAGTGCCACTGACTTG
*
658132 TGGGCTTTGAAAGGGTGCCACTGACTTG
1 TGGGCTTTGAAAGAGTGCCACTGACTTG
* *
658160 TGGGCTTTGAAAAGAATGCCACTGATTTG
1 TGGGCTTTG-AAAGAGTGCCACTGACTTG
*
658189 TGGGCTTTGAAAGGGTGCCACTGACTTG
1 TGGGCTTTGAAAGAGTGCCACTGACTTG
*
658217 TGGGCTTTGAAAGGGTGCCACTGACTTG
1 TGGGCTTTGAAAGAGTGCCACTGACTTG
*
658245 TGGGCTTTGAAAAGAGTGCCACTGATTTG
1 TGGGCTTTG-AAAGAGTGCCACTGACTTG
658274 TGGGCTTTGAAAGGAGTGCCACTGACTTG
1 TGGGCTTTGAAA-GAGTGCCACTGACTTG
658303 TGGGCTTTGAAAGGAGTGCCACTGACTTG
1 TGGGCTTTGAAA-GAGTGCCACTGACTTG
*
658332 TGGGCTTTGAAAGGGTGCCACTGACTTG
1 TGGGCTTTGAAAGAGTGCCACTGACTTG
658360 TGGGCTTTGAAAGGAGTGCCACTGACTTG
1 TGGGCTTTGAAA-GAGTGCCACTGACTTG
*
658389 TGGGCTTTGAAAGGGTGCCACTGACTTG
1 TGGGCTTTGAAAGAGTGCCACTGACTTG
*
658417 TGGGCTTTGAAAGGGTGCCACTGACTTG
1 TGGGCTTTGAAAGAGTGCCACTGACTTG
*
658445 TGGGCTTTGAAAGGGTGCCACTGACTTG
1 TGGGCTTTGAAAGAGTGCCACTGACTTG
*
658473 TGGGCTTTGAAAAGAGTGCCACTGATTTG
1 TGGGCTTTG-AAAGAGTGCCACTGACTTG
658502 TGGGCTTTGAAAGGAGTGCCACTGACTTG
1 TGGGCTTTGAAA-GAGTGCCACTGACTTG
658531 TGGGCTTTGAAAG
1 TGGGCTTTGAAAG
658544 GGATGAACAT
Statistics
Matches: 969, Mismatches: 74, Indels: 54
0.88 0.07 0.05
Matches are distributed among these distances:
27 3 0.00
28 495 0.51
29 403 0.42
30 45 0.05
31 20 0.02
32 2 0.00
33 1 0.00
ACGTcount: A:0.22, C:0.17, G:0.32, T:0.29
Consensus pattern (28 bp):
TGGGCTTTGAAAGAGTGCCACTGACTTG
Found at i:657817 original size:57 final size:57
Alignment explanation
Indices: 657445--658542 Score: 1526
Period size: 57 Copynumber: 19.2 Consensus size: 57
657435 TTAACTTGCA
** * **
657445 TGGGCTTT-AAAAGGGTGCCACTGACTTGCGTGGGCTTTGAAAGAATGCCACTAACTCA
1 TGGGCTTTGAAAAGGGTGCCACTGACTT--GTGGGCTTTGAAAGGGTGCCACTGACTTG
* * * *
657503 TGGGCTTTG-AAAGGTTGCCACTAACTCGTGGGCTTTGAAAGAGTGCCACTGACTTG
1 TGGGCTTTGAAAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACTTG
* * * * *
657559 TGGGCTTTGAAAA-GGTACCACTGACTTGCGTGAGCTTTAAAAAGAGTGCCATTGACTTGTG
1 TGGGCTTTGAAAAGGGTGCCACTGACTT--GTGGGCTTT-GAAAGGGTGCCACTGAC-T-TG
* * * *
657620 TGGGCTTT-AAAAGGGTGCCACTGACTTGTGGGCTTTAAAAGAGTGCCACTCAATTG
1 TGGGCTTTGAAAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACTTG
* * * *
657676 TGGGCTTCG-CAATGGTGCCACTGACTTGTGGGCTTTGAAAAGGTGCCACTGACTTG
1 TGGGCTTTGAAAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACTTG
* *
657732 TGGGCTCTG-AAAGGGTGCCACTAACTTGTGGGCTTTGAAAGGGTGCCACTGACTTG
1 TGGGCTTTGAAAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACTTG
**
657788 TGGGCTTTGAAAAGAATGCCACTGACTTGTGGGCTTTGAAAGGAGTGCCACTGACTTG
1 TGGGCTTTGAAAAGGGTGCCACTGACTTGTGGGCTTTGAAAGG-GTGCCACTGACTTG
* * *
657846 TGGGCTTTG-AAAGGGTGCCACTAACTTGTGGTCTTTGAAAAGAGTGCCACTGACTTG
1 TGGGCTTTGAAAAGGGTGCCACTGACTTGTGGGCTTTG-AAAGGGTGCCACTGACTTG
* *
657903 TGGGCTTTG-AAAGGAGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGAGTTA
1 TGGGCTTTGAAAAGG-GTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACTTG
* *
657960 TGGGCTTTG-AAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGATTTG
1 TGGGCTTTGAAAAGGGTGCCACTGACTTGTGGGCTTTG-AAAGGGTGCCACTGACTTG
*
658017 TGGGATTTG-AAAGGAGTGCCACTGACTTGTGGGCTTTGAAAGGAGTGCCACTGACTTG
1 TGGGCTTTGAAAAGG-GTGCCACTGACTTGTGGGCTTTGAAAGG-GTGCCACTGACTTG
* *
658075 TGGGCTTTG-AAAGGGTGCCACTAACTTGTGGGCTTTGAAAGGAGTGCCATTGACTTG
1 TGGGCTTTGAAAAGGGTGCCACTGACTTGTGGGCTTTGAAAGG-GTGCCACTGACTTG
** *
658132 TGGGCTTTG-AAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGAATGCCACTGATTTG
1 TGGGCTTTGAAAAGGGTGCCACTGACTTGTGGGCTTTG-AAAGGGTGCCACTGACTTG
658189 TGGGCTTTG-AAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACTTG
1 TGGGCTTTGAAAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACTTG
* *
658245 TGGGCTTTGAAAAGAGTGCCACTGATTTGTGGGCTTTGAAAGGAGTGCCACTGACTTG
1 TGGGCTTTGAAAAGGGTGCCACTGACTTGTGGGCTTTGAAAGG-GTGCCACTGACTTG
658303 TGGGCTTTG-AAAGGAGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACTTG
1 TGGGCTTTGAAAAGG-GTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACTTG
658360 TGGGCTTTG-AAAGGAGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACTTG
1 TGGGCTTTGAAAAGG-GTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACTTG
658417 TGGGCTTTG-AAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACTTG
1 TGGGCTTTGAAAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACTTG
* *
658473 TGGGCTTTGAAAAGAGTGCCACTGATTTGTGGGCTTTGAAAGGAGTGCCACTGACTTG
1 TGGGCTTTGAAAAGGGTGCCACTGACTTGTGGGCTTTGAAAGG-GTGCCACTGACTTG
658531 TGGGCTTTGAAA
1 TGGGCTTTGAAA
658543 GGGATGAACA
Statistics
Matches: 948, Mismatches: 70, Indels: 44
0.89 0.07 0.04
Matches are distributed among these distances:
56 250 0.26
57 425 0.45
58 222 0.23
59 23 0.02
60 5 0.01
61 23 0.02
ACGTcount: A:0.22, C:0.17, G:0.32, T:0.29
Consensus pattern (57 bp):
TGGGCTTTGAAAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACTTG
Found at i:658163 original size:257 final size:256
Alignment explanation
Indices: 657445--658545 Score: 1674
Period size: 257 Copynumber: 4.3 Consensus size: 256
657435 TTAACTTGCA
* * * **
657445 TGGGCTTTAAAAGGGTGCCACTGACTTGCGTGGGCTTTG-AAAGAATGCCACTAACTCATGGGCT
1 TGGGCTTTGAAAGGGTGCCACTGACTT--GTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCT
* * * *
657509 TTGAAAGGTTGCCACTAACTCGTGGGCTTTGAAA-GAGTGCCACTGACTTGTGGGCTTTGAAAAG
64 TTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGAGTGCCACTGACTTGTGGGCTTTGAAAGG
* * * * * *
657573 GTACCACTGACTTGCGTGAGCTTTAAAAAGAGTGCCATTGACTTGTGTGGGCTTTAAAAGGGTGC
129 GTGCCACTGACTT--GTGGGCTTTGAAAGGAGTGCCACTGAC-T-TGTGGGCTTTGAAAGGGTGC
* * * * *
657638 CACTGACTTGTGGGCTTT-AAAAGAGTGCCACTCAATTGTGGGCTTCGCAATGGTGCCACTGACT
190 CACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACT
657702 TG
255 TG
* * * *
657704 TGGGCTTTGAAAAGGTGCCACTGACTTGTGGGCTCTG-AAAGGGTGCCACTAACTTGTGGGCTTT
1 TGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTT
* *
657768 GAAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGAATGCCACTGACTTGTGGGCTTTGAAAGGAG
66 GAAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGAGTGCCACTGACTTGTGGGCTTTGAAAGG-G
* * *
657833 TGCCACTGACTTGTGGGCTTTGAAAGG-GTGCCACTAACTTGTGGTCTTTGAAAAGAGTGCCACT
130 TGCCACTGACTTGTGGGCTTTGAAAGGAGTGCCACTGACTTGTGGGCTTTG-AAAGGGTGCCACT
* * *
657897 GACTTGTGGGCTTTGAAAGGAGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGAGTTA
194 GACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACTTG
* *
657960 TGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGATTTGTGGGATTT
1 TGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTT
658025 GAAAGGAGTGCCACTGACTTGTGGGCTTTGAAAGGAGTGCCACTGACTTGTGGGCTTTGAAAGGG
66 GAAAGG-GTGCCACTGACTTGTGGGCTTTGAAAGGAGTGCCACTGACTTGTGGGCTTTGAAAGGG
* *
658090 TGCCACTAACTTGTGGGCTTTGAAAGGAGTGCCATTGACTTGTGGGCTTTGAAAGGGTGCCACTG
130 TGCCACTGACTTGTGGGCTTTGAAAGGAGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTG
* *
658155 ACTTGTGGGCTTTGAAAAGAATGCCACTGATTTGTGGGCTTTGAAAGGGTGCCACTGACTTG
195 ACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACTTG
*
658217 TGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGATTTGTGGGCTTT
1 TGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTT
658282 GAAAGGAGTGCCACTGACTTGTGGGCTTTGAAAGGAGTGCCACTGACTTGTGGGCTTTGAAAGGG
66 GAAAGG-GTGCCACTGACTTGTGGGCTTTGAAAGGAGTGCCACTGACTTGTGGGCTTTGAAAGGG
658347 TGCCACTGACTTGTGGGCTTTGAAAGGAGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTG
130 TGCCACTGACTTGTGGGCTTTGAAAGGAGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTG
*
658412 ACTTGTGGGCTTTG-AAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACTTG
195 ACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACTTG
* * *
658473 TGGGCTTTGAAAAGAGTGCCACTGATTTGTGGGCTTTGAAAGGAGTGCCACTGACTTGTGGGCTT
1 TGGGCTTTG-AAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTT
658538 TGAAAGGG
65 TGAAAGGG
658546 ATGAACATTT
Statistics
Matches: 777, Mismatches: 57, Indels: 19
0.91 0.07 0.02
Matches are distributed among these distances:
254 9 0.01
255 27 0.03
256 138 0.18
257 463 0.60
258 103 0.13
259 37 0.05
ACGTcount: A:0.22, C:0.17, G:0.33, T:0.29
Consensus pattern (256 bp):
TGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTT
GAAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGAGTGCCACTGACTTGTGGGCTTTGAAAGGGT
GCCACTGACTTGTGGGCTTTGAAAGGAGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGA
CTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACTTG
Found at i:659776 original size:1 final size:1
Alignment explanation
Indices: 659772--659825 Score: 63
Period size: 1 Copynumber: 54.0 Consensus size: 1
659762 TTTTTTGCTA
* * * * *
659772 TTTTTTTGTTTTTTTTTGTTTTGTTTTTTTTTTTGTTTTTTTTTGTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
659826 GGGTTTAAAG
Statistics
Matches: 43, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
1 43 1.00
ACGTcount: A:0.00, C:0.00, G:0.09, T:0.91
Consensus pattern (1 bp):
T
Found at i:659785 original size:10 final size:10
Alignment explanation
Indices: 659762--659826 Score: 82
Period size: 10 Copynumber: 6.7 Consensus size: 10
659752 GACCCTTCTA
*
659762 TTTTTTGCTAT
1 TTTTTTG-TTT
659773 TTTTTTGTTT
1 TTTTTTGTTT
659783 TTTTTTG--T
1 TTTTTTGTTT
*
659791 TTTGTT-TTT
1 TTTTTTGTTT
659800 TTTTTTGTTT
1 TTTTTTGTTT
659810 TTTTTTGTTT
1 TTTTTTGTTT
659820 TTTTTTG
1 TTTTTTG
659827 GGTTTAAAGG
Statistics
Matches: 48, Mismatches: 3, Indels: 7
0.83 0.05 0.12
Matches are distributed among these distances:
8 6 0.12
9 6 0.12
10 29 0.60
11 7 0.15
ACGTcount: A:0.02, C:0.02, G:0.11, T:0.86
Consensus pattern (10 bp):
TTTTTTGTTT
Found at i:659793 original size:27 final size:28
Alignment explanation
Indices: 659763--659821 Score: 86
Period size: 27 Copynumber: 2.2 Consensus size: 28
659753 ACCCTTCTAT
659763 TTTTTG-CTATTTTTTTGTTTTTTTTTG
1 TTTTTGTCTATTTTTTTGTTTTTTTTTG
* *
659790 -TTTTGTTTTTTTTTTTGTTTTTTTTTG
1 TTTTTGTCTATTTTTTTGTTTTTTTTTG
659817 TTTTT
1 TTTTT
659822 TTTTGGGTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
26 5 0.18
27 19 0.68
28 4 0.14
ACGTcount: A:0.02, C:0.02, G:0.10, T:0.86
Consensus pattern (28 bp):
TTTTTGTCTATTTTTTTGTTTTTTTTTG
Found at i:659825 original size:27 final size:27
Alignment explanation
Indices: 659772--659825 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
659762 TTTTTTGCTA
659772 TTTTTTTGTTTTTTTTTGTTTTGTTTT
1 TTTTTTTGTTTTTTTTTGTTTTGTTTT
659799 TTTTTTTGTTTTTTTTTGTTTT-TTTT
1 TTTTTTTGTTTTTTTTTGTTTTGTTTT
659825 T
1 T
659826 GGGTTTAAAG
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
26 5 0.19
27 22 0.81
ACGTcount: A:0.00, C:0.00, G:0.09, T:0.91
Consensus pattern (27 bp):
TTTTTTTGTTTTTTTTTGTTTTGTTTT
Found at i:659831 original size:22 final size:23
Alignment explanation
Indices: 659784--659831 Score: 71
Period size: 22 Copynumber: 2.1 Consensus size: 23
659774 TTTTTGTTTT
**
659784 TTTTTGTTTTGTTTTTTTTTTTG
1 TTTTTGTTTTGTTTTTTTTTGGG
659807 TTTTT-TTTTGTTTTTTTTTGGG
1 TTTTTGTTTTGTTTTTTTTTGGG
659829 TTT
1 TTT
659832 AAAGGATGCC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 18 0.78
23 5 0.22
ACGTcount: A:0.00, C:0.00, G:0.15, T:0.85
Consensus pattern (23 bp):
TTTTTGTTTTGTTTTTTTTTGGG
Found at i:692873 original size:21 final size:21
Alignment explanation
Indices: 692847--692894 Score: 78
Period size: 21 Copynumber: 2.3 Consensus size: 21
692837 TATATGTATC
*
692847 GATACATAAAGGTTACCTTAG
1 GATACATAAAGGTTAACTTAG
692868 GATACATAAAGGTTAACTTAG
1 GATACATAAAGGTTAACTTAG
*
692889 GCTACA
1 GATACA
692895 AAGGTCAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.40, C:0.15, G:0.19, T:0.27
Consensus pattern (21 bp):
GATACATAAAGGTTAACTTAG
Found at i:696406 original size:40 final size:40
Alignment explanation
Indices: 696295--697197 Score: 482
Period size: 40 Copynumber: 22.3 Consensus size: 40
696285 GGCCCCTGGT
* *
696295 CAACAGATTGGAAGGTTGGCCAAGGTGAAACCGATAAAGC
1 CAACAGATTGGAAGGTTGGCCAGGGCGAAACCGATAAAGC
** * * ** *
696335 CAATTGATTGGAAGGGTTGACCAGGGTGAAACTAATAAAAC
1 CAACAGATTGGAA-GGTTGGCCAGGGCGAAACCGATAAAGC
* *
696376 CAACAGATTAGAAGGTTGGCC-GAGGCGAAACCGATAAAAC
1 CAACAGATTGGAAGGTTGGCCAG-GGCGAAACCGATAAAGC
* * *
696416 CAACAGATTGTAAGGTTGGTCAGGGCGAAACTGATAAAGC
1 CAACAGATTGGAAGGTTGGCCAGGGCGAAACCGATAAAGC
* * * * * *
696456 CAACAAATTGGAAGGGCTGACCAAGGCGAAACTGATAAAGT
1 CAACAGATTGGAA-GGTTGGCCAGGGCGAAACCGATAAAGC
** * *
696497 CAATTGATTGGAAGGTTGGCCAGGGCAAAACCAATAAAGC
1 CAACAGATTGGAAGGTTGGCCAGGGCGAAACCGATAAAGC
* * * * * * * *
696537 CAACAGATTAGAAGGGTTGACTACGGCAAAACCAATAGAGT
1 CAACAGATTGGAA-GGTTGGCCAGGGCGAAACCGATAAAGC
* * * * *
696578 CAACCGATTGGAAGGTTAGCTTA-GGTGAAACTGATAAAGC
1 CAACAGATTGGAAGGTTGGC-CAGGGCGAAACCGATAAAGC
* * * ** * *
696618 CAACA-ATTGGAAGGGTTGACTAGGGCAAAACTAAGAAAGT
1 CAACAGATTGGAA-GGTTGGCCAGGGCGAAACCGATAAAGC
** * * * *
696658 CAATTGATTGGAAGGTTAGCCAAGGCAAAATCGATAAAGC
1 CAACAGATTGGAAGGTTGGCCAGGGCGAAACCGATAAAGC
* * *
696698 CAACAGATTGGAAGGTCGGCCAGGGCAAAACTGATAAAGC
1 CAACAGATTGGAAGGTTGGCCAGGGCGAAACCGATAAAGC
* * * * * *
696738 CAACATAGTGGAAGGTCGGCTAGGGTGAAACCAATAAAGC
1 CAACAGATTGGAAGGTTGGCCAGGGCGAAACCGATAAAGC
* * * * * * *
696778 AAACAGATTAGAAGGGTTGACCTGGGTGAAACTGATAAAGT
1 CAACAGATTGGAA-GGTTGGCCAGGGCGAAACCGATAAAGC
* * * * * * * * *
696819 CAACGGATTAGATGGATTGCCCATGACAAAATCGATAAAGT
1 CAACAGATTGGAAGG-TTGGCCAGGGCGAAACCGATAAAGC
* * * * *
696860 CAACTGATTAGAAGGTTGGCTAGGGTGAAACCAATAAAGC
1 CAACAGATTGGAAGGTTGGCCAGGGCGAAACCGATAAAGC
* * ** * * * *
696900 CTACAGATTGAGAGGGTTAACTAGGGCAAAATCGATAAAGT
1 CAACAGATTG-GAAGGTTGGCCAGGGCGAAACCGATAAAGC
*** * * ** * ** *
696941 CAATC-GATCAAAAGGCTAGTTAGTGTAAAATCGATAAAGC
1 CAA-CAGATTGGAAGGTTGGCCAGGGCGAAACCGATAAAGC
* * * * * *
696981 CAATAGATTGGAAGTGTTGACTAGGGCAAAACTGATAAAGT
1 CAACAGATTGGAAG-GTTGGCCAGGGCGAAACCGATAAAGC
** * * * *
697022 CAATTGATTGGAAGGTTGGCCAAGACAATAACCAATAAAGC
1 CAACAGATTGGAAGGTTGGCCAGGGCGA-AACCGATAAAGC
* * ** * *
697063 CAATAGATTGGAAGGGTTGACCAACGAGAAATCGATAAAGC
1 CAACAGATTGGAA-GGTTGGCCAGGGCGAAACCGATAAAGC
* * ** * * * *
697104 CAATAGATTAGAAAGGTTTACCAAGGCAAAACTGATAAAGT
1 CAACAGATT-GGAAGGTTGGCCAGGGCGAAACCGATAAAGC
* * * *
697145 CAACCGATTGGAATGTTGGCGAGGGTGAAACCGATAAAGC
1 CAACAGATTGGAAGGTTGGCCAGGGCGAAACCGATAAAGC
*
697185 TAACAGATTGGAA
1 CAACAGATTGGAA
697198 AATTATTCGA
Statistics
Matches: 652, Mismatches: 193, Indels: 36
0.74 0.22 0.04
Matches are distributed among these distances:
39 10 0.02
40 337 0.52
41 291 0.45
42 14 0.02
ACGTcount: A:0.39, C:0.15, G:0.27, T:0.19
Consensus pattern (40 bp):
CAACAGATTGGAAGGTTGGCCAGGGCGAAACCGATAAAGC
Found at i:696493 original size:81 final size:81
Alignment explanation
Indices: 696295--696827 Score: 423
Period size: 81 Copynumber: 6.6 Consensus size: 81
696285 GGCCCCTGGT
* * * * *
696295 CAACAGATTGGAA-GGTTGGCCAAGGTGAAACCGATAAAGCCAATTGATTGGAAGGGTTGACCAG
1 CAACAGATTGGAAGGGTTGACCAAGGCGAAACTGATAAAGCCAACTGATTGGAA-GGTTGGCCAG
* *
696359 GGTGAAACTAATAAAAC
65 GGCGAAACTAATAAAGC
* * * * * * * *
696376 CAACAGATTAGAA-GGTTGGCCGAGGCGAAACCGATAAAACCAACAGATTGTAAGGTTGGTCAGG
1 CAACAGATTGGAAGGGTTGACCAAGGCGAAACTGATAAAGCCAACTGATTGGAAGGTTGGCCAGG
*
696440 GCGAAACTGATAAAGC
66 GCGAAACTAATAAAGC
* * * *
696456 CAACAAATTGGAAGGGCTGACCAAGGCGAAACTGATAAAGTCAATTGATTGGAAGGTTGGCCAGG
1 CAACAGATTGGAAGGGTTGACCAAGGCGAAACTGATAAAGCCAACTGATTGGAAGGTTGGCCAGG
* *
696521 GCAAAACCAATAAAGC
66 GCGAAACTAATAAAGC
* * * * ** * * * * *
696537 CAACAGATTAGAAGGGTTGACTACGGCAAAACCAATAGAGTCAACCGATTGGAAGGTTAGCTTA-
1 CAACAGATTGGAAGGGTTGACCAAGGCGAAACTGATAAAGCCAACTGATTGGAAGGTTGGC-CAG
* *
696601 GGTGAAACTGATAAAGC
65 GGCGAAACTAATAAAGC
* * * * * * * * *
696618 CAACA-ATTGGAAGGGTTGACTAGGGCAAAACTAAGAAAGTCAATTGATTGGAAGGTTAGCCAAG
1 CAACAGATTGGAAGGGTTGACCAAGGCGAAACTGATAAAGCCAACTGATTGGAAGGTTGGCCAGG
* *
696682 GC-AAAATCGATAAAGC
66 GCGAAACT-AATAAAGC
* * * * * * *
696698 CAACAGATTGGAA-GGTCGGCCAGGGCAAAACTGATAAAGCCAACAT-AGTGGAAGGTCGGCTAG
1 CAACAGATTGGAAGGGTTGACCAAGGCGAAACTGATAAAGCCAAC-TGATTGGAAGGTTGGCCAG
* *
696761 GGTGAAACCAATAAAGC
65 GGCGAAACTAATAAAGC
* * ** * * *
696778 AAACAGATTAGAAGGGTTGACCTGGGTGAAACTGATAAAGTCAACGGATT
1 CAACAGATTGGAAGGGTTGACCAAGGCGAAACTGATAAAGCCAACTGATT
696828 AGATGGATTG
Statistics
Matches: 363, Mismatches: 80, Indels: 18
0.79 0.17 0.04
Matches are distributed among these distances:
79 5 0.01
80 152 0.42
81 205 0.56
82 1 0.00
ACGTcount: A:0.39, C:0.16, G:0.28, T:0.18
Consensus pattern (81 bp):
CAACAGATTGGAAGGGTTGACCAAGGCGAAACTGATAAAGCCAACTGATTGGAAGGTTGGCCAGG
GCGAAACTAATAAAGC
Found at i:696511 original size:121 final size:121
Alignment explanation
Indices: 696295--696792 Score: 340
Period size: 121 Copynumber: 4.1 Consensus size: 121
696285 GGCCCCTGGT
* *** * *
696295 CAACAGATTGGAAGGTTGGCCAAGGTGAAACCGATAAAGCCAATTGATTGGAAGGGTTGACCAGG
1 CAACAGATTGGAAGGTTGGCCAAGGCGAAACCGATAAAGCCAACAAATTGGAAGGGCTGACCAAG
* * *
696360 GTGAAACTAATAAAACCAACAGATTAGAAGGTTGGCC-GAGGCGAAACCGATAAAAC
66 GCGAAACTAATAAAACCAACAGATTAGAAGGTTGGCCAG-GGCAAAACCAATAAAAC
* * * *
696416 CAACAGATTGTAAGGTTGGTCAGGGCGAAACTGATAAAGCCAACAAATTGGAAGGGCTGACCAAG
1 CAACAGATTGGAAGGTTGGCCAAGGCGAAACCGATAAAGCCAACAAATTGGAAGGGCTGACCAAG
* ** ** * *
696481 GCGAAACTGATAAAGTCAATTGATTGGAAGGTTGGCCAGGGCAAAACCAATAAAGC
66 GCGAAACTAATAAAACCAACAGATTAGAAGGTTGGCCAGGGCAAAACCAATAAAAC
* * * * * * * * ** * **
696537 CAACAGATTAGAAGGGTTGACTACGGCAAAACCAATAGAGTCAACCGATTGGAA-GG-TTAGCTT
1 CAACAGATTGGAA-GGTTGGCCAAGGCGAAACCGATAAAGCCAACAAATTGGAAGGGCTGA-CCA
* * * * * * * * **
696600 AGGTGAAACTGATAAAGCCAACA-ATTGGAAGGGTTGACTAGGGCAAAACTAAGAAAGT
64 AGGCGAAACTAATAAAACCAACAGATTAGAA-GGTTGGCCAGGGCAAAACCAATAAAAC
** * * * * * * *
696658 CAATTGATTGGAAGGTTAGCCAAGGCAAAATCGATAAAGCCAACAGATTGGAAGGTC-GGCCAGG
1 CAACAGATTGGAAGGTTGGCCAAGGCGAAACCGATAAAGCCAACAAATTGGAAGGGCTGACCAAG
* * * * * * * * ** *
696722 GCAAAACTGATAAAGCCAACATAGTGGAAGGTCGGCTAGGGTGAAACCAATAAAGC
66 GCGAAACTAATAAAACCAACAGATTAGAAGGTTGGCCAGGGCAAAACCAATAAAAC
* *
696778 AAACAGATTAGAAGG
1 CAACAGATTGGAAGG
696793 GTTGACCTGG
Statistics
Matches: 293, Mismatches: 77, Indels: 15
0.76 0.20 0.04
Matches are distributed among these distances:
120 92 0.31
121 171 0.58
122 30 0.10
ACGTcount: A:0.39, C:0.16, G:0.28, T:0.17
Consensus pattern (121 bp):
CAACAGATTGGAAGGTTGGCCAAGGCGAAACCGATAAAGCCAACAAATTGGAAGGGCTGACCAAG
GCGAAACTAATAAAACCAACAGATTAGAAGGTTGGCCAGGGCAAAACCAATAAAAC
Found at i:696930 original size:81 final size:80
Alignment explanation
Indices: 696845--697121 Score: 236
Period size: 81 Copynumber: 3.4 Consensus size: 80
696835 TTGCCCATGA
* *
696845 CAAAATCGATAAAGTCAACTGATTAGAAGGTTGGCTAGGGTGAAACCAATAAAGCCTACAGATT-
1 CAAAATCGATAAAGTCAA-TGATTAGAAGGTTGGCTAGGGTAAAACCAATAAAGCCAACAGATTG
696909 GAGAGGGTTAACTAGGG
65 GA-AGGGTTAACTAGGG
* * * * * * * * *
696926 CAAAATCGATAAAGTCAATCGATCAAAAGGCTAGTTAGTGTAAAATCGATAAAGCCAATAGATTG
1 CAAAATCGATAAAGTCAAT-GATTAGAAGGTTGGCTAGGGTAAAACCAATAAAGCCAACAGATTG
* *
696991 GAAGTGTTGACTAGGG
65 GAAGGGTTAACTAGGG
* * * ** *
697007 CAAAA-CTGATAAAGTCAATTGATTGGAAGGTTGGCCAAGACAATAACCAATAAAGCCAATAGAT
1 CAAAATC-GATAAAGTCAA-TGATTAGAAGGTTGGCTAGGGTAA-AACCAATAAAGCCAACAGAT
* * **
697071 TGGAAGGGTTGACCAACG
63 TGGAAGGGTTAACTAGGG
*
697089 -AGAAATCGATAAAGCCAATAGATTAGAAAGGTT
1 CA-AAATCGATAAAGTCAAT-GATTAG-AAGGTT
697122 TACCAAGGCA
Statistics
Matches: 155, Mismatches: 32, Indels: 16
0.76 0.16 0.08
Matches are distributed among these distances:
80 2 0.01
81 93 0.60
82 53 0.34
83 7 0.05
ACGTcount: A:0.41, C:0.13, G:0.24, T:0.21
Consensus pattern (80 bp):
CAAAATCGATAAAGTCAATGATTAGAAGGTTGGCTAGGGTAAAACCAATAAAGCCAACAGATTGG
AAGGGTTAACTAGGG
Found at i:697142 original size:82 final size:82
Alignment explanation
Indices: 696972--697157 Score: 189
Period size: 82 Copynumber: 2.3 Consensus size: 82
696962 AGTGTAAAAT
* * * * * *
696972 CGATAAAGCCAATAGATTGGAAGTGTTGACTAGGGCAAAACTGATAAAGTCAATTGATTGGAAGG
1 CGATAAAGCCAATAGATTGGAAGGGTTGACAAGAGCAAAACTGATAAAGCCAATAGATTGAAAGG
*
697037 TTGGCCAAGACAATAAC
66 TTGACCAAGACAATAAC
* *
697054 CAATAAAGCCAATAGATTGGAAGGGTTGACCAACGAG-AAATC-GATAAAGCCAATAGATTAGAA
1 CGATAAAGCCAATAGATTGGAAGGGTTGA-CAA-GAGCAAAACTGATAAAGCCAATAGATT-GAA
* *
697117 AGGTTTACCAAGGCAA-AAC
63 AGGTTGACCAAGACAATAAC
* * **
697136 TGATAAAGTCAACCGATTGGAA
1 CGATAAAGCCAATAGATTGGAA
697158 TGTTGGCGAG
Statistics
Matches: 85, Mismatches: 16, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
82 62 0.73
83 21 0.25
84 2 0.02
ACGTcount: A:0.42, C:0.15, G:0.24, T:0.20
Consensus pattern (82 bp):
CGATAAAGCCAATAGATTGGAAGGGTTGACAAGAGCAAAACTGATAAAGCCAATAGATTGAAAGG
TTGACCAAGACAATAAC
Found at i:698112 original size:90 final size:90
Alignment explanation
Indices: 697901--698907 Score: 865
Period size: 90 Copynumber: 11.4 Consensus size: 90
697891 TCCAAAGGAA
* * * * *** *
697901 ATTAGGCTCTGTGATGCATTAGTA-CGATCTAGT-GATTGAAGAAAAAGGATATTACAAGGAACT
1 ATTAGGCTTTGTGATGCATCAATATC-ATCTAGTGGA-TGAAGAAAAAGGATATGATTGGGAAAT
* * *
697964 GTATGGGCTACACCCTTG-CCAAAGGT
64 GGATGGGCTGCACCCTTGCCCCAAGGT
* * * *
697990 ATTAGGCTCTATGATGCATCAATATCATCTAGTGGATGAAGAAAAAGGATATGATTAGGACATGG
1 ATTAGGCTTTGTGATGCATCAATATCATCTAGTGGATGAAGAAAAAGGATATGATTGGGAAATGG
698055 ATGGGCTGCACCCTTGCCCCAAGGT
66 ATGGGCTGCACCCTTGCCCCAAGGT
* * * *
698080 ATTAGGCTTTATGACGCATCAATATCATCTAGTGGATGAAGACAAAGGATCTGATTGGGAAATGG
1 ATTAGGCTTTGTGATGCATCAATATCATCTAGTGGATGAAGAAAAAGGATATGATTGGGAAATGG
* * *
698145 ATGGGCTGCACCTTTGCTCTAAGGT
66 ATGGGCTGCACCCTTGCCCCAAGGT
* * * * *
698170 ATTAGGCTCTGTGATGCATTAATATCATTTAGTGGATGAA-AGAAAAGGATATGATTTGAAAATG
1 ATTAGGCTTTGTGATGCATCAATATCATCTAGTGGATGAAGA-AAAAGGATATGATTGGGAAATG
** *
698234 GATGGGCAACACCCTTGTCCCAAGGT
65 GATGGGCTGCACCCTTGCCCCAAGGT
* * * * * *
698260 ATTAGGCTTTGTGATGCATCAATATCATTTGGTAGTTGAGGGAAAAA-GATATGTTTGGGAAATG
1 ATTAGGCTTTGTGATGCATCAATATCATCTAGTGGATGA-AGAAAAAGGATATGATTGGGAAATG
* *
698324 TG-TGGGCTGCACCTTTGCCCTAAGGT
65 -GATGGGCTGCACCCTTGCCCCAAGGT
* * * *
698350 ATTAGGCTCTGTGATGCACCAATATCATCTAGTGGATGAAGAAAAAAGATATGACTGGGAAATGG
1 ATTAGGCTTTGTGATGCATCAATATCATCTAGTGGATGAAGAAAAAGGATATGATTGGGAAATGG
698415 ATGGGCTGCACCCTTGCCCCAAGGT
66 ATGGGCTGCACCCTTGCCCCAAGGT
* *
698440 ATTTGGCTTTGTGATGCATCAATATCATCTAGTGGATGAAG-GAAAGGATATGATTGGGAAATGG
1 ATTAGGCTTTGTGATGCATCAATATCATCTAGTGGATGAAGAAAAAGGATATGATTGGGAAATGG
* *
698504 ATGGGCTACACCCTTGCCTCAAGGT
66 ATGGGCTGCACCCTTGCCCCAAGGT
*** * * * * * * * * *
698529 ATTAGGCTCAATGATGAATTAATATCAT-TAGTAG-TTAAGGGAAAATGATATGACTAGGAAAAG
1 ATTAGGCTTTGTGATGCATCAATATCATCTAGTGGATGAA-GAAAAAGGATATGATTGGGAAATG
* ** **
698592 TG-TGGG-TCGTA-CCTTGCCTTAAGAAA
65 -GATGGGCT-GCACCCTTGCCCCAAG-GT
* * **
698618 ATTCGGCTTTGTGATGCATCAATATCATCTAGTTGA--AAG-AAGGGGATATGATTGGG-AATGT
1 ATTAGGCTTTGTGATGCATCAATATCATCTAGTGGATGAAGAAAAAGGATATGATTGGGAAATG-
* **
698679 G-TGGGCTGCA-CCTTGCCCTAAAGAA
65 GATGGGCTGCACCCTTGCCC-CAAGGT
* * * **
698704 ATTTGGCTTTGTGATGCATCAATACCATCTAGTTGA--AAG-AAGGGGATATGATTGGG-AATGT
1 ATTAGGCTTTGTGATGCATCAATATCATCTAGTGGATGAAGAAAAAGGATATGATTGGGAAATG-
* * *
698765 G-TGGGCTGCA-CCTT-CCCTTATGGAA
65 GATGGGCTGCACCCTTGCCC-CAAGG-T
* * * * *
698790 ATTAGGCTTTGTCATGCATTAATACCATCTAGT---T-AATAAAAGGGATATGATT-GG-AATGT
1 ATTAGGCTTTGTGATGCATCAATATCATCTAGTGGATGAAGAAAAAGGATATGATTGGGAAATG-
* *
698849 G-TGGGCTGCA-CCTTACCCCAAGGA
65 GATGGGCTGCACCCTTGCCCCAAGGT
*
698873 AGTTAGGCTTTGTGATGCATTAATATCATCTAGTG
1 A-TTAGGCTTTGTGATGCATCAATATCATCTAGTG
698908 ATTGAGTGAT
Statistics
Matches: 778, Mismatches: 116, Indels: 52
0.82 0.12 0.05
Matches are distributed among these distances:
83 2 0.00
84 56 0.07
85 22 0.03
86 124 0.16
87 19 0.02
88 19 0.02
89 185 0.24
90 345 0.44
91 5 0.01
92 1 0.00
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.29
Consensus pattern (90 bp):
ATTAGGCTTTGTGATGCATCAATATCATCTAGTGGATGAAGAAAAAGGATATGATTGGGAAATGG
ATGGGCTGCACCCTTGCCCCAAGGT
Found at i:700890 original size:40 final size:43
Alignment explanation
Indices: 700768--700890 Score: 173
Period size: 42 Copynumber: 3.0 Consensus size: 43
700758 AATAAAGAGA
*
700768 GTAAGGGTAAGAGATATCACACACGAGATTTATAAAGGTT-TC
1 GTAAGGGCAAGAGATATCACACACGAGATTTATAAAGGTTCTC
700810 GTAAGGGCAAGAGATATCACACACGAGATTTATAAAGGTTCT-
1 GTAAGGGCAAGAGATATCACACACGAGATTTATAAAGGTTCTC
** * *
700852 GTAAGTTC-A-AGTTATCACACATGAGATTTATAAAGGTTC
1 GTAAGGGCAAGAGATATCACACACGAGATTTATAAAGGTTC
700891 CGTCCAAACA
Statistics
Matches: 75, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
40 28 0.37
41 1 0.01
42 45 0.60
43 1 0.01
ACGTcount: A:0.37, C:0.13, G:0.22, T:0.28
Consensus pattern (43 bp):
GTAAGGGCAAGAGATATCACACACGAGATTTATAAAGGTTCTC
Found at i:701077 original size:34 final size:33
Alignment explanation
Indices: 701002--701130 Score: 138
Period size: 34 Copynumber: 3.9 Consensus size: 33
700992 CCTTACAACA
*
701002 CTATCTTTTGA-AGGCTAAGATAGAACC--TCC
1 CTATCTTTTCACAGGCTAAGATAGAACCTTTCC
* *
701032 CTATCTCTTCACAGGTTAAGATAGAACCTATTCC
1 CTATCTTTTCACAGGCTAAGATAGAACCT-TTCC
** *
701066 CTATCTTTTCACAAACTAAGATGGAACCTTTCTC
1 CTATCTTTTCACAGGCTAAGATAGAACCTTTC-C
*
701100 CGTATCTTTTTCAAAGGCTAAGATAGAACCT
1 C-TATC-TTTTCACAGGCTAAGATAGAACCT
701131 CTCAATCACT
Statistics
Matches: 80, Mismatches: 12, Indels: 8
0.80 0.12 0.08
Matches are distributed among these distances:
30 9 0.11
31 15 0.19
33 3 0.04
34 29 0.36
35 4 0.05
36 20 0.25
ACGTcount: A:0.30, C:0.24, G:0.13, T:0.33
Consensus pattern (33 bp):
CTATCTTTTCACAGGCTAAGATAGAACCTTTCC
Found at i:701746 original size:32 final size:33
Alignment explanation
Indices: 701705--701766 Score: 99
Period size: 32 Copynumber: 1.9 Consensus size: 33
701695 ACATTTTATA
701705 GTGTATCGATACAAAG-AACATGTATCGATGCC
1 GTGTATCGATACAAAGCAACATGTATCGATGCC
* *
701737 GTGTATCGATACTAAGCAATATGTATCGAT
1 GTGTATCGATACAAAGCAACATGTATCGAT
701767 ACATTTGGGT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
32 15 0.56
33 12 0.44
ACGTcount: A:0.34, C:0.16, G:0.21, T:0.29
Consensus pattern (33 bp):
GTGTATCGATACAAAGCAACATGTATCGATGCC
Found at i:702437 original size:36 final size:35
Alignment explanation
Indices: 702392--702469 Score: 90
Period size: 36 Copynumber: 2.2 Consensus size: 35
702382 GTTAATTTTC
*
702392 CCCCTTAATAAAGA-ATTTC-CCAAAATGAAATATCTT
1 CCCCTTAAT--AGACATTTCTCCAAAATAAAATAT-TT
*
702428 CCCCTTAATAGACTTTTCTCCAAAATAAAATATTT
1 CCCCTTAATAGACATTTCTCCAAAATAAAATATTT
702463 -CCCTTAA
1 CCCCTTAA
702470 AATTATAGAC
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
34 10 0.26
35 6 0.16
36 22 0.58
ACGTcount: A:0.38, C:0.24, G:0.04, T:0.33
Consensus pattern (35 bp):
CCCCTTAATAGACATTTCTCCAAAATAAAATATTT
Found at i:707287 original size:34 final size:34
Alignment explanation
Indices: 707218--707334 Score: 136
Period size: 34 Copynumber: 3.5 Consensus size: 34
707208 TTTTTTGAAG
*
707218 GCTAAGATAGAACCTC-T--CTTTCTTTTCATAA
1 GCTAAGATAGAACCTCTTCCCTATCTTTTCATAA
**
707249 GCTAAGATAGAACCTCTTCCCTATCTTTTCATTG
1 GCTAAGATAGAACCTCTTCCCTATCTTTTCATAA
*
707283 GCTAAGATAGAACAT-TTCTCCATATCTTTTTCA-AA
1 GCTAAGATAGAACCTCTTC-CC-TATC-TTTTCATAA
707318 GCTAAGATAGAACCTCT
1 GCTAAGATAGAACCTCT
707335 CAATCACTTC
Statistics
Matches: 72, Mismatches: 7, Indels: 9
0.82 0.08 0.10
Matches are distributed among these distances:
31 16 0.22
32 1 0.01
33 3 0.04
34 27 0.38
35 18 0.25
36 7 0.10
ACGTcount: A:0.30, C:0.23, G:0.11, T:0.36
Consensus pattern (34 bp):
GCTAAGATAGAACCTCTTCCCTATCTTTTCATAA
Found at i:707735 original size:20 final size:20
Alignment explanation
Indices: 707710--707761 Score: 104
Period size: 20 Copynumber: 2.6 Consensus size: 20
707700 GACATGCTCC
707710 AATGTATCGATACAATTCAT
1 AATGTATCGATACAATTCAT
707730 AATGTATCGATACAATTCAT
1 AATGTATCGATACAATTCAT
707750 AATGTATCGATA
1 AATGTATCGATA
707762 TAATGCATTC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.40, C:0.13, G:0.12, T:0.35
Consensus pattern (20 bp):
AATGTATCGATACAATTCAT
Found at i:708475 original size:14 final size:14
Alignment explanation
Indices: 708451--708492 Score: 50
Period size: 14 Copynumber: 2.9 Consensus size: 14
708441 TGTTTTCCCC
708451 TTTTTTGTTTTTGT-
1 TTTTTT-TTTTTGTA
708465 TTTTCTTTTTTTGTA
1 TTTT-TTTTTTTGTA
708480 TTTTTTTATTTTG
1 TTTTTTT-TTTTG
708493 AGGAAACTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
14 14 0.56
15 11 0.44
ACGTcount: A:0.05, C:0.02, G:0.10, T:0.83
Consensus pattern (14 bp):
TTTTTTTTTTTGTA
Found at i:712482 original size:158 final size:157
Alignment explanation
Indices: 712247--712581 Score: 387
Period size: 157 Copynumber: 2.1 Consensus size: 157
712237 GATTAGAGAT
* ** ** *
712247 GGGAT-GAACCTATCCCAAATGACCACCTTTGGCATAAAAGCATACTAGTGACAACCTAGGACTC
1 GGGATAGAACCTATCCTAAATGACCACCTTTAACATAAAAGCATACTAGTGACAACCTAAAACTA
* * *
712311 GATTCTGAAAAATTATCAAAATGCCCCTAAGTGATACCTTCGACGTGAAAA-TATTCTAGTAACC
66 GATTCTGAAAAATTATCAAAATGCCCCTAAGGGATACCTTCGACGT-AAAAGTATCCGA-T-ACC
* *
712375 -CTAAAAGACTAAAAAGGGATTTTAAAAAA
128 TCTAAAAGACTAAAAAAGGATTTCAAAAAA
* *
712404 TGGA-AGAACCTATCCTAAATGCCCA-CTTTCAACATAAAAGCGA-ACCTAGTGACAACCTAAAA
1 GGGATAGAACCTATCCTAAATGACCACCTTT-AACATAAAAGC-ATA-CTAGTGACAACCTAAAA
* * * * * *
712466 GTAGGTTCTGATAAATTATCAAAATGCTCCTAGGGGATACTTTCGACGTAAAAGTATCCGATACC
63 CTAGATTCTGAAAAATTATCAAAATGCCCCTAAGGGATACCTTCGACGTAAAAGTATCCGATACC
*
712531 TCTAAAGGACTAAAAAAGGATTTCAAAAAA
128 TCTAAAAGACTAAAAAAGGATTTCAAAAAA
712561 GGGATA-AACCTATCCTAAATG
1 GGGATAGAACCTATCCTAAATG
712582 TCCATCATCA
Statistics
Matches: 150, Mismatches: 21, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
156 7 0.05
157 80 0.53
158 63 0.42
ACGTcount: A:0.40, C:0.20, G:0.16, T:0.24
Consensus pattern (157 bp):
GGGATAGAACCTATCCTAAATGACCACCTTTAACATAAAAGCATACTAGTGACAACCTAAAACTA
GATTCTGAAAAATTATCAAAATGCCCCTAAGGGATACCTTCGACGTAAAAGTATCCGATACCTCT
AAAAGACTAAAAAAGGATTTCAAAAAA
Found at i:712647 original size:157 final size:158
Alignment explanation
Indices: 712293--712706 Score: 419
Period size: 157 Copynumber: 2.6 Consensus size: 158
712283 AAAGCATACT
* * * *
712293 AGTGACAACCTAGGACTCGATTCTGAAAAATTATCAAAATGCCCCTAAGTGATACCTTCGACGTG
1 AGTGACAACCTAAGACTCGATTCTGAAAAATTATCAAAATGCCCCTAGGGGATACTTTCGACGT-
* * * * *
712358 AAAA-TATTCTAGTAACCCTAAAAGACTAAAAAGGGATTTTAAAAAATGGAAGAACCTATCCTAA
65 AAAAGTATCCGAGTAACCCTAAAAGACTAAAAAAGGATTTCAAAAAAGGGAAGAACCTATCCTAA
* *
712422 ATGCCCACTTTCAACATAAAAGCGAACCT
130 ATGCCCACTATCAACATAAAAGCGAACCC
* * * * * *
712451 AGTGACAACCTAAAAGTAGGTTCTGATAAATTATCAAAATGCTCCTAGGGGATACTTTCGACGTA
1 AGTGACAACCTAAGACTCGATTCTGAAAAATTATCAAAATGCCCCTAGGGGATACTTTCGACGTA
*
712516 AAAGTATCCGA-T-ACCTCTAAAGGACTAAAAAAGGATTTCAAAAAAGGGATA-AACCTATCCTA
66 AAAGTATCCGAGTAACC-CTAAAAGACTAAAAAAGGATTTCAAAAAAGGGA-AGAACCTATCCTA
* * * *
712578 AATGTCCA-TCATCAGCATAAAAGTGGACCC
129 AATGCCCACT-ATCAACATAAAAGCGAACCC
* * * * * *
712608 GGTGACAACTTAAGACTCGAATT-TAAAAAATAATAAAAATGCCCCTATGGGTATA-TCTTCGAC
1 AGTGACAACCTAAGACTCG-ATTCTGAAAAATTATCAAAATGCCCCTA-GGGGATACT-TTCGAC
* * **
712671 ATGAAAGTATCTTAGTAACCCTAAAAGACATAAAAA
63 GTAAAAGTATCCGAGTAACCCTAAAAGAC-TAAAAA
712707 GGAAAAAGGG
Statistics
Matches: 207, Mismatches: 39, Indels: 18
0.78 0.15 0.07
Matches are distributed among these distances:
156 4 0.02
157 101 0.49
158 84 0.41
159 9 0.04
160 9 0.04
ACGTcount: A:0.42, C:0.19, G:0.15, T:0.24
Consensus pattern (158 bp):
AGTGACAACCTAAGACTCGATTCTGAAAAATTATCAAAATGCCCCTAGGGGATACTTTCGACGTA
AAAGTATCCGAGTAACCCTAAAAGACTAAAAAAGGATTTCAAAAAAGGGAAGAACCTATCCTAAA
TGCCCACTATCAACATAAAAGCGAACCC
Found at i:713855 original size:11 final size:12
Alignment explanation
Indices: 713828--713892 Score: 57
Period size: 11 Copynumber: 5.7 Consensus size: 12
713818 GAAGCTTACA
* *
713828 AAATGAAGAAAG
1 AAATCAAGAAGG
713840 AAATCAA-AAGG
1 AAATCAAGAAGG
713851 AAATCAAGCAA--
1 AAATCAAG-AAGG
* *
713862 AAATGAAGAAAG
1 AAATCAAGAAGG
713874 AAATCAA-AAGG
1 AAATCAAGAAGG
713885 AAATCAAG
1 AAATCAAG
713893 CAAAAATGAA
Statistics
Matches: 43, Mismatches: 5, Indels: 10
0.74 0.09 0.17
Matches are distributed among these distances:
10 2 0.05
11 27 0.63
12 12 0.28
13 2 0.05
ACGTcount: A:0.65, C:0.08, G:0.18, T:0.09
Consensus pattern (12 bp):
AAATCAAGAAGG
Found at i:713868 original size:34 final size:34
Alignment explanation
Indices: 713827--713903 Score: 154
Period size: 34 Copynumber: 2.3 Consensus size: 34
713817 GGAAGCTTAC
713827 AAAATGAAGAAAGAAATCAAAAGGAAATCAAGCA
1 AAAATGAAGAAAGAAATCAAAAGGAAATCAAGCA
713861 AAAATGAAGAAAGAAATCAAAAGGAAATCAAGCA
1 AAAATGAAGAAAGAAATCAAAAGGAAATCAAGCA
713895 AAAATGAAG
1 AAAATGAAG
713904 TTAAAGGAAA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 43 1.00
ACGTcount: A:0.65, C:0.08, G:0.18, T:0.09
Consensus pattern (34 bp):
AAAATGAAGAAAGAAATCAAAAGGAAATCAAGCA
Found at i:714015 original size:23 final size:22
Alignment explanation
Indices: 713989--714045 Score: 78
Period size: 22 Copynumber: 2.5 Consensus size: 22
713979 TTTCTTGTTT
713989 TTTCTTCTTGTTTTTGCTTGCTA
1 TTTCTTCTT-TTTTTGCTTGCTA
* *
714012 TTTCCTCTTTCTTTGCTTGCTA
1 TTTCTTCTTTTTTTGCTTGCTA
*
714034 TTTTTTCTTTTT
1 TTTCTTCTTTTT
714046 GTTTGTTGCT
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
22 21 0.72
23 8 0.28
ACGTcount: A:0.04, C:0.19, G:0.09, T:0.68
Consensus pattern (22 bp):
TTTCTTCTTTTTTTGCTTGCTA
Found at i:714313 original size:43 final size:44
Alignment explanation
Indices: 714254--714367 Score: 167
Period size: 43 Copynumber: 2.6 Consensus size: 44
714244 TTCAGGTCCT
714254 AAATCGAATTGAATTGCTTTGCTGCTACCTCTTTTTTAGCT-CC
1 AAATCGAATTGAATTGCTTTGCTGCTACCTCTTTTTTAGCTGCC
* * * * *
714297 AAATTGAATTAAATTGCTTTGCTGCTAGCTTTTTTTTAGTTGCC
1 AAATCGAATTGAATTGCTTTGCTGCTACCTCTTTTTTAGCTGCC
*
714341 AAATCAAATTGAATTGCTTTGCTGCTA
1 AAATCGAATTGAATTGCTTTGCTGCTA
714368 GCCATCGATT
Statistics
Matches: 62, Mismatches: 8, Indels: 1
0.87 0.11 0.01
Matches are distributed among these distances:
43 36 0.58
44 26 0.42
ACGTcount: A:0.25, C:0.18, G:0.15, T:0.43
Consensus pattern (44 bp):
AAATCGAATTGAATTGCTTTGCTGCTACCTCTTTTTTAGCTGCC
Found at i:714366 original size:44 final size:43
Alignment explanation
Indices: 714157--714369 Score: 178
Period size: 44 Copynumber: 4.9 Consensus size: 43
714147 TTTCTTTTTC
* * * *
714157 TTTT-GCTCCATATCGAATTGAATTACTTTACT-CTCAACTCTT
1 TTTTAGCTCCAAATCGAATTGAATTGCTTTGCTGCT-AGCTCTT
* * * * ** * * *
714199 GTTTAGCTCCCAACTCAAATTAAATTTTTTTGCTACCAACTCTT
1 TTTTAGCT-CCAAATCGAATTGAATTGCTTTGCTGCTAGCTCTT
* * * *
714243 CTTCAGGTCCTAAATCGAATTGAATTGCTTTGCTGCTACCTCTT
1 TTTTAGCTCC-AAATCGAATTGAATTGCTTTGCTGCTAGCTCTT
* * *
714287 TTTTAGCTCCAAATTGAATTAAATTGCTTTGCTGCTAGCTTTT
1 TTTTAGCTCCAAATCGAATTGAATTGCTTTGCTGCTAGCTCTT
* *
714330 TTTTAGTTGCCAAATCAAATTGAATTGCTTTGCTGCTAGC
1 TTTTAGCT-CCAAATCGAATTGAATTGCTTTGCTGCTAGC
714370 CATCGATTGA
Statistics
Matches: 135, Mismatches: 31, Indels: 8
0.78 0.18 0.05
Matches are distributed among these distances:
42 3 0.02
43 41 0.30
44 90 0.67
45 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.12, T:0.42
Consensus pattern (43 bp):
TTTTAGCTCCAAATCGAATTGAATTGCTTTGCTGCTAGCTCTT
Found at i:715646 original size:21 final size:23
Alignment explanation
Indices: 715622--715667 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 23
715612 AACACAAATA
715622 TAAAAA-T-GATTGATTTTATTT
1 TAAAAAGTGGATTGATTTTATTT
715643 TAAAAAGGTTGGATTGATTTTATTT
1 TAAAAA-G-TGGATTGATTTTATTT
715668 CAATTATTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
21 6 0.29
24 1 0.05
25 14 0.67
ACGTcount: A:0.35, C:0.00, G:0.15, T:0.50
Consensus pattern (23 bp):
TAAAAAGTGGATTGATTTTATTT
Found at i:716281 original size:14 final size:15
Alignment explanation
Indices: 716257--716285 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
716247 GCTACCCATA
716257 GGAATAAAAATGATT
1 GGAATAAAAATGATT
716272 GGAA-AAAAATGATT
1 GGAATAAAAATGATT
716286 TAAATTTAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.55, C:0.00, G:0.21, T:0.24
Consensus pattern (15 bp):
GGAATAAAAATGATT
Found at i:716791 original size:145 final size:145
Alignment explanation
Indices: 716633--716923 Score: 521
Period size: 145 Copynumber: 2.0 Consensus size: 145
716623 CGGCCAAAGC
*
716633 ATGGAAAAGCTTGAAAACTAAACTTTTATTTTTTTGCATTAAAGTCCCTAAAATGAAAGAAT-CC
1 ATGGAAAAGCTTGAAAACTAAACTTTTATTTTTTTGCATTAAAGTCCCTAAAATCAAAGAATCCC
*
716697 TTTCAAACAAGCCGTGAACATCTAAACTAATGTTAAAACACACTTGAATCACTTCTCCCAACAAC
66 TTT-AAACAAGCCGTGAACATCTAAACCAATGTTAAAACACACTTGAATCACTTCTCCCAACAAC
716762 ATGCTTGTCTAAGGAA
130 ATGCTTGTCTAAGGAA
* *
716778 ATGGAAAAGCTTGAAAACTAAACTTTTATTTTTTTGCATTAAAGTCGCTAAAATCAAAGCATCCC
1 ATGGAAAAGCTTGAAAACTAAACTTTTATTTTTTTGCATTAAAGTCCCTAAAATCAAAGAATCCC
*
716843 TTTAAACAAGCTGTGAACATCTAAACCAATGTTAAAACACACTTGAATCACTTCTCCCAACAACA
66 TTTAAACAAGCCGTGAACATCTAAACCAATGTTAAAACACACTTGAATCACTTCTCCCAACAACA
716908 TGCTTGTCTAAGGAA
131 TGCTTGTCTAAGGAA
716923 A
1 A
716924 CAACATGATC
Statistics
Matches: 140, Mismatches: 5, Indels: 2
0.95 0.03 0.01
Matches are distributed among these distances:
145 135 0.96
146 5 0.04
ACGTcount: A:0.39, C:0.20, G:0.12, T:0.29
Consensus pattern (145 bp):
ATGGAAAAGCTTGAAAACTAAACTTTTATTTTTTTGCATTAAAGTCCCTAAAATCAAAGAATCCC
TTTAAACAAGCCGTGAACATCTAAACCAATGTTAAAACACACTTGAATCACTTCTCCCAACAACA
TGCTTGTCTAAGGAA
Found at i:717188 original size:22 final size:23
Alignment explanation
Indices: 717148--717197 Score: 59
Period size: 22 Copynumber: 2.2 Consensus size: 23
717138 TTTTTCTTAA
* *
717148 TTTTTCTCTTTTATCTTCT-TTT
1 TTTTTCTATTTTATCTTCTCTCT
717170 TTTTTCTATCTTTAT-TTCTCTCT
1 TTTTTCTAT-TTTATCTTCTCTCT
717193 TTTTT
1 TTTTT
717198 AGCTAAAGCT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
22 12 0.50
23 12 0.50
ACGTcount: A:0.06, C:0.18, G:0.00, T:0.76
Consensus pattern (23 bp):
TTTTTCTATTTTATCTTCTCTCT
Found at i:718615 original size:13 final size:13
Alignment explanation
Indices: 718597--718622 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
718587 TACACCAAGT
718597 ATGTATCGATACA
1 ATGTATCGATACA
718610 ATGTATCGATACA
1 ATGTATCGATACA
718623 CCAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:718620 original size:32 final size:33
Alignment explanation
Indices: 718579--718642 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 33
718569 TAGCCAAACT
**
718579 TGTATCGATACACCAAGTA-TGTATCGATACAA
1 TGTATCGATACACCAAAAATTGTATCGATACAA
718611 TGTATCGATACACCAAAAATTGTATCGATACA
1 TGTATCGATACACCAAAAATTGTATCGATACA
718643 TTGGCTTGTA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 17 0.59
33 12 0.41
ACGTcount: A:0.39, C:0.19, G:0.14, T:0.28
Consensus pattern (33 bp):
TGTATCGATACACCAAAAATTGTATCGATACAA
Found at i:721935 original size:32 final size:32
Alignment explanation
Indices: 721894--721956 Score: 90
Period size: 32 Copynumber: 2.0 Consensus size: 32
721884 TAGCCAAACT
* **
721894 TGTATCGATACACCAAGTACGTATCGATACAA
1 TGTATCGATACACAAAAAACGTATCGATACAA
*
721926 TGTATCGATACACAAAAAATGTATCGATACA
1 TGTATCGATACACAAAAAACGTATCGATACA
721957 TTGGCTTGTA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
32 27 1.00
ACGTcount: A:0.41, C:0.19, G:0.14, T:0.25
Consensus pattern (32 bp):
TGTATCGATACACAAAAAACGTATCGATACAA
Found at i:724189 original size:21 final size:21
Alignment explanation
Indices: 724156--724205 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 21
724146 TTGCAAGTTG
*
724156 AAATAAAGAAGTTGGCTAATGA
1 AAATAAAGAAGTTAGCTAA-GA
*
724178 AAATAATG-AGTTAGCTAAGAA
1 AAATAAAGAAGTTAGCTAAG-A
724199 AAATAAA
1 AAATAAA
724206 AACTTGCATA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
20 1 0.04
21 16 0.67
22 7 0.29
ACGTcount: A:0.56, C:0.04, G:0.18, T:0.22
Consensus pattern (21 bp):
AAATAAAGAAGTTAGCTAAGA
Found at i:728126 original size:13 final size:13
Alignment explanation
Indices: 728108--728135 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
728098 TTCTTTGTAT
728108 CATTGTATCGATA
1 CATTGTATCGATA
728121 CATTGTATCGATA
1 CATTGTATCGATA
728134 CA
1 CA
728136 GGGTGATTAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (13 bp):
CATTGTATCGATA
Found at i:728299 original size:20 final size:20
Alignment explanation
Indices: 728256--728301 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 20
728246 AAATCTTTTG
728256 CAAAATACTTGTTTTTCACTT
1 CAAAATACTTGTTTTTCAC-T
*
728277 CAAATTACTTCGTTTTTCA-T
1 CAAAATACTT-GTTTTTCACT
728297 CAAAA
1 CAAAA
728302 CCAGCATCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
20 5 0.23
21 9 0.41
22 8 0.36
ACGTcount: A:0.33, C:0.20, G:0.04, T:0.43
Consensus pattern (20 bp):
CAAAATACTTGTTTTTCACT
Found at i:737601 original size:166 final size:165
Alignment explanation
Indices: 737419--738173 Score: 803
Period size: 166 Copynumber: 4.5 Consensus size: 165
737409 ATGGGTTTAG
* * *
737419 AATTTTGAAAATTCATCAAATATTATTATTTATTTAAAATTAAATCAGTCTTT-AAAAATTCATT
1 AATTTTTAAAATTCATCAAATATTATTATTTATTTCATATTAAATCAGT-TTTCAAAAATTCATT
* * * *
737483 CATTTTCATGAGTTTTGGAATTTTTTCTTTGAAATTTCC-CTATTTCTAAAATACGAAGTTTTCT
65 CATTTTCATGAGTTTTTGAATTTTTTCCTTGAAA-TTCCGTTATTTCTAAAATACGAAGTTTTTT
* *
737547 ACTTTGAAAAATTTTTAGGGAGATTTTTCTTGGTTTTT
129 ACTCTGTAAAATTTTT-GGGAGATTTTTCTTGGTTTTT
*
737585 AATTTTTAAAATTCATCATATATTATTATTTATTTCATATTAAATCAGTTTTCAAAAATTCATTC
1 AATTTTTAAAATTCATCAAATATTATTATTTATTTCATATTAAATCAGTTTTCAAAAATTCATTC
* * * * *
737650 ATTTTCATGGGTTTTTGAATTTTTTCCTTAAAATTCCTTTATTTTTGAAATACGAAGTTTTTTAC
66 ATTTTCATGAGTTTTTGAATTTTTTCCTTGAAATTCCGTTATTTCTAAAATACGAAGTTTTTTAC
**
737715 TCTGTAAAATTTTTGGG-GAAATTTCTTGGTTTTT
131 TCTGTAAAATTTTTGGGAGATTTTTCTTGGTTTTT
* *
737749 AATTTTTAAAATTCA--AATATATTATTATTTATTTCATATTAAATTAGGTTTCAAAAATTCATT
1 AATTTTTAAAATTCATCAA-ATATTATTATTTATTTCATATTAAATCAGTTTTCAAAAATTCATT
* * *
737812 TATTTTCATGAGTTTTTGAATTTTTTCCTTGAAATTCCGTTATTTCCAAAATACTAAGTTTTTTA
65 CATTTTCATGAGTTTTTGAATTTTTTCCTTGAAATTCCGTTATTTCTAAAATACGAAGTTTTTTA
* ** * *
737877 CTCCGTAATTTTTTTGGGGAGATTTTTCATGGCTTTT
130 CTCTGTAAAATTTTT-GGGAGATTTTTCTTGGTTTTT
* *
737914 AATTTTTAAAATTAATCAAATATTATTATTTATTTCATATTAAATCAATTTTCAAAAATTCATTC
1 AATTTTTAAAATTCATCAAATATTATTATTTATTTCATATTAAATCAGTTTTCAAAAATTCATTC
* * * ** ** * *
737979 ATTTTCATTCA-TTTTTCATTTTTCATTTTTTTTGAAATT-TTTCTATTT-TCAAAAAACTAAGT
66 ATTTTCA-TGAGTTTTTGA--ATT--TTTTCCTTGAAATTCCGT-TATTTCT-AAAATACGAAGT
* * * * **
738041 TTTATACTCCGTAAATGTTTTTAGGGAGATTTTTCTTAGTTTAA
124 TTTTTACTCTGTAAA-ATTTTT-GGGAGATTTTTCTTGGTTTTT
* * * * * * * * *
738085 AATTTTTAAATTTCATCTAATAATATTAATAAATTCATATTAAATTAGTTTTGAAAAATCCAAAT
1 AATTTTTAAAATTCATCAAATATTATTATTTATTTCATATTAAATCAGTTTTCAAAAATTC--AT
*
738150 T-A-TTTCATGA-ATTTTGAATTTTTT
64 TCATTTTCATGAGTTTTTGAATTTTTT
738174 TGTATATATT
Statistics
Matches: 500, Mismatches: 72, Indels: 34
0.83 0.12 0.06
Matches are distributed among these distances:
162 1 0.00
163 112 0.22
164 33 0.07
165 37 0.07
166 180 0.36
167 4 0.01
168 4 0.01
169 1 0.00
170 48 0.10
171 76 0.15
172 1 0.00
173 3 0.01
ACGTcount: A:0.32, C:0.10, G:0.08, T:0.51
Consensus pattern (165 bp):
AATTTTTAAAATTCATCAAATATTATTATTTATTTCATATTAAATCAGTTTTCAAAAATTCATTC
ATTTTCATGAGTTTTTGAATTTTTTCCTTGAAATTCCGTTATTTCTAAAATACGAAGTTTTTTAC
TCTGTAAAATTTTTGGGAGATTTTTCTTGGTTTTT
Found at i:738164 original size:329 final size:323
Alignment explanation
Indices: 737500--738154 Score: 711
Period size: 329 Copynumber: 2.0 Consensus size: 323
737490 ATGAGTTTTG
* * **
737500 GAATTTTTTCTTTGAAATTTCCCTATTTCTAAAATACGAAGTTTTCTACTTTGAAAAATTTTTAG
1 GAATTTTTTCCTTGAAATTTCCCTATTTCCAAAATACGAAGTTTTCTACTCCGAAAAATTTTTAG
* * * *
737565 GGAGATTTTTCTTGGTTTTTAATTTTTAAAATTCATCATATATTATTATTTATTTCATATTAAAT
66 GGAGATTTTTCATGGCTTTTAATTTTTAAAATTAATCAAATATTATTATTTATTTCATATTAAAT
* ** *
737630 CAGTTTTCAAAAATTCATTCATTTTCATGGGTTTTTGAATTTTTTCCTTAAAATTCCTTTATTTT
131 CAATTTTCAAAAATTCATTCATTTTCATGCATTTTTCAATTTTTTCCTTAAAATTCCTTTATTTT
** * * * * **
737695 TGAAATACGAAGTTTTTTACTCTGTAAAATTTTTGGGGAAATTTCTTGGTTTTTAATTTTTAAAA
196 CAAAAAACGAAGTTTTATACTCCGTAAAATTTTTGGGGAAATTTCTTAGTTTAAAATTTTTAAAA
* * * * * *
737760 TTCAAATATATTATTATTTATTTCATATTAAATTAGGTTTCAAAAATTCATTTATTTTCATGAGT
261 TTCAAATATAATATTAATAAATTCATATTAAATTAGGTTTCAAAAATCCAATTATTTTCA--A--
737825 TTTT
322 --TT
* * * * ** *
737829 GAATTTTTTCCTTGAAA-TTCCGTTATTTCCAAAATACTAAGTTTTTTACTCCGTAATTTTTTTG
1 GAATTTTTTCCTTGAAATTTCC-CTATTTCCAAAATACGAAGTTTTCTACTCCGAAAAATTTTTA
737893 GGGAGATTTTTCATGGCTTTTAATTTTTAAAATTAATCAAATATTATTATTTATTTCATATTAAA
65 GGGAGATTTTTCATGGCTTTTAATTTTTAAAATTAATCAAATATTATTATTTATTTCATATTAAA
* * ** * *
737958 TCAATTTTCAAAAATTCATTCATTTTCATTCATTTTTCATTTTTCATTTTTTTTGAAATT-TTTC
130 TCAATTTTCAAAAATTCATTCATTTTCATGCATTTTTCA--ATT--TTTTCCTTAAAATTCCTT-
* * **
738022 TATTTTCAAAAAACTAAGTTTTATACTCCGTAAATGTTTTTAGGGAGATTTTTCTTAGTTTAAAA
190 TATTTTCAAAAAACGAAGTTTTATACTCCGTAAA-ATTTTT-GGG-GAAATTTCTTAGTTTAAAA
* ** * *
738087 TTTTTAAATTTCATCTAATAATATTAATAAATTCATATTAAATTAGTTTTGAAAAATCCAAATTA
252 TTTTTAAAATTCAAAT-ATAATATTAATAAATTCATATTAAATTAGGTTTCAAAAATCC-AATTA
738152 TTT
315 TTT
738155 CATGAATTTT
Statistics
Matches: 267, Mismatches: 48, Indels: 13
0.81 0.15 0.04
Matches are distributed among these distances:
328 4 0.01
329 143 0.54
331 2 0.01
332 2 0.01
333 39 0.15
334 5 0.02
335 3 0.01
336 27 0.10
337 35 0.13
338 7 0.03
ACGTcount: A:0.31, C:0.10, G:0.08, T:0.51
Consensus pattern (323 bp):
GAATTTTTTCCTTGAAATTTCCCTATTTCCAAAATACGAAGTTTTCTACTCCGAAAAATTTTTAG
GGAGATTTTTCATGGCTTTTAATTTTTAAAATTAATCAAATATTATTATTTATTTCATATTAAAT
CAATTTTCAAAAATTCATTCATTTTCATGCATTTTTCAATTTTTTCCTTAAAATTCCTTTATTTT
CAAAAAACGAAGTTTTATACTCCGTAAAATTTTTGGGGAAATTTCTTAGTTTAAAATTTTTAAAA
TTCAAATATAATATTAATAAATTCATATTAAATTAGGTTTCAAAAATCCAATTATTTTCAATT
Found at i:738622 original size:16 final size:15
Alignment explanation
Indices: 738595--738633 Score: 62
Period size: 16 Copynumber: 2.6 Consensus size: 15
738585 GGTTTAGTTG
738595 AAAAAG-AAGAGAAA
1 AAAAAGAAAGAGAAA
738609 AAAAGAGAAAGAGAAA
1 AAAA-AGAAAGAGAAA
738625 AAAAAGAAA
1 AAAAAGAAA
738634 CAAATAGAGT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 4 0.17
15 7 0.30
16 12 0.52
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (15 bp):
AAAAAGAAAGAGAAA
Found at i:738625 original size:15 final size:16
Alignment explanation
Indices: 738595--738633 Score: 55
Period size: 15 Copynumber: 2.6 Consensus size: 16
738585 GGTTTAGTTG
738595 AAAAAG-AAGAGAAAA
1 AAAAAGAAAGAGAAAA
*
738610 AAAGAGAAAGAG-AAA
1 AAAAAGAAAGAGAAAA
738625 AAAAAGAAA
1 AAAAAGAAA
738634 CAAATAGAGT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
15 16 0.76
16 5 0.24
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (16 bp):
AAAAAGAAAGAGAAAA
Found at i:739717 original size:9 final size:9
Alignment explanation
Indices: 739705--739741 Score: 51
Period size: 9 Copynumber: 4.3 Consensus size: 9
739695 AATAAAAGCA
739705 AAATTAAAT
1 AAATTAAAT
739714 AAATTAAAT
1 AAATTAAAT
739723 AAA--AAAT
1 AAATTAAAT
*
739730 GAATTAAAT
1 AAATTAAAT
739739 AAA
1 AAA
739742 AAGAATGAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
7 6 0.25
9 18 0.75
ACGTcount: A:0.70, C:0.00, G:0.03, T:0.27
Consensus pattern (9 bp):
AAATTAAAT
Found at i:739727 original size:20 final size:20
Alignment explanation
Indices: 739690--739742 Score: 54
Period size: 21 Copynumber: 2.6 Consensus size: 20
739680 ACATTTTCAA
*
739690 AAATAAATAAAAGCAAAATT
1 AAATAAATAAAAGAAAAATT
*
739710 AAATAAATTAAATA-AAAAATG
1 AAATAAA-TAAA-AGAAAAATT
*
739731 AATTAAATAAAA
1 AAATAAATAAAA
739743 AGAATGAATA
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
19 1 0.04
20 11 0.39
21 15 0.54
22 1 0.04
ACGTcount: A:0.72, C:0.02, G:0.04, T:0.23
Consensus pattern (20 bp):
AAATAAATAAAAGAAAAATT
Found at i:739750 original size:18 final size:17
Alignment explanation
Indices: 739710--739756 Score: 62
Period size: 16 Copynumber: 2.8 Consensus size: 17
739700 AAGCAAAATT
*
739710 AAATAAATTAAAT-AAA
1 AAATGAATTAAATAAAA
739726 AAATGAATTAAATAAAA
1 AAATGAATTAAATAAAA
739743 AGAATGAA-TAAATA
1 A-AATGAATTAAATA
739757 TTCTTATTAA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
16 12 0.43
17 10 0.36
18 6 0.21
ACGTcount: A:0.70, C:0.00, G:0.06, T:0.23
Consensus pattern (17 bp):
AAATGAATTAAATAAAA
Found at i:740572 original size:5 final size:5
Alignment explanation
Indices: 740562--740594 Score: 57
Period size: 5 Copynumber: 6.4 Consensus size: 5
740552 TCTTAAGATT
740562 TTTTA TTTTA TTTTA TTTTA TTTTAA TTTTA TT
1 TTTTA TTTTA TTTTA TTTTA TTTT-A TTTTA TT
740595 AAATAAAATT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 22 0.81
6 5 0.19
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (5 bp):
TTTTA
Found at i:743296 original size:20 final size:20
Alignment explanation
Indices: 743273--743310 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
743263 ACAAAATTTG
743273 AAAATACTTTGAAAAACCGA
1 AAAATACTTTGAAAAACCGA
743293 AAAATACTTTGAAAAACC
1 AAAATACTTTGAAAAACC
743311 ATAATAAGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.55, C:0.16, G:0.08, T:0.21
Consensus pattern (20 bp):
AAAATACTTTGAAAAACCGA
Found at i:743510 original size:19 final size:20
Alignment explanation
Indices: 743486--743535 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
743476 TATGCTTTGC
**
743486 ATCGATACATGTTC-ATTGT
1 ATCGATACATGCACAATTGT
743505 ATCGATACATGCACAATTGT
1 ATCGATACATGCACAATTGT
*
743525 ATTGATACATG
1 ATCGATACATG
743536 AAACTGGTAG
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
19 12 0.44
20 15 0.56
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (20 bp):
ATCGATACATGCACAATTGT
Found at i:745199 original size:15 final size:15
Alignment explanation
Indices: 745176--745206 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
745166 ATCAAAGATA
745176 ATGAAGATAATGATG
1 ATGAAGATAATGATG
*
745191 ATGATGATAATGATG
1 ATGAAGATAATGATG
745206 A
1 A
745207 AGTTGACTCG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.45, C:0.00, G:0.26, T:0.29
Consensus pattern (15 bp):
ATGAAGATAATGATG
Found at i:750149 original size:52 final size:52
Alignment explanation
Indices: 750071--750196 Score: 225
Period size: 52 Copynumber: 2.4 Consensus size: 52
750061 CGAAATATGA
*
750071 AAATTTACCTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGC
*
750123 AAATTTGCCTGCATGTATCGATACATTTTATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGC
*
750175 GAATTTGCCTGCATGTATCGAT
1 AAATTTGCCTGCATGTATCGAT
750197 GCAAAGATCA
Statistics
Matches: 71, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 71 1.00
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.36
Consensus pattern (52 bp):
AAATTTGCCTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGC
Found at i:750210 original size:52 final size:51
Alignment explanation
Indices: 750071--750219 Score: 210
Period size: 52 Copynumber: 2.9 Consensus size: 51
750061 CGAAATATGA
*
750071 AAATTTACCTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTGGGC
*
750123 AAATTTGCCTGCATGTATCGATACATTTTATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTGGGC
* * *
750175 GAATTTGCCTGCATGTATCGATGCA-AAGATCAGTGTATCGATACA
1 AAATTTGCCTGCATGTATCGATACATTA-AT-AGTGTATCGATACA
750220 ATGTATCGGT
Statistics
Matches: 89, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
51 2 0.02
52 87 0.98
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34
Consensus pattern (51 bp):
AAATTTGCCTGCATGTATCGATACATTAATAGTGTATCGATACATCTGGGC
Found at i:750607 original size:35 final size:34
Alignment explanation
Indices: 750561--750751 Score: 223
Period size: 35 Copynumber: 5.9 Consensus size: 34
750551 AAATGAAGGC
750561 ATGGGCATGGAATAAAAAATTGAAGGCATGGAGTG
1 ATGGGCATGGAATAAAAAATTGAAGGCATGG-GTG
*
750596 ATGGGCATGGAATAAAAAAATGAAGGC-------
1 ATGGGCATGGAATAAAAAATTGAAGGCATGGGTG
750623 ATGGGCATGGAATAAAAAATTGAAGGCATGGAGTG
1 ATGGGCATGGAATAAAAAATTGAAGGCATGG-GTG
750658 ATGGGCATGGAATAAAAAA-TGAAGGC-------
1 ATGGGCATGGAATAAAAAATTGAAGGCATGGGTG
750684 ATGGGCATGGAATAAAAAAATTGAAGGCATGGGATG
1 ATGGGCATGGAAT-AAAAAATTGAAGGCATGGG-TG
*
750720 ATGGGCATGGAATAAAAAAATGAAGGCATGGG
1 ATGGGCATGGAATAAAAAATTGAAGGCATGGG
750752 CATTGAATAA
Statistics
Matches: 135, Mismatches: 3, Indels: 36
0.78 0.02 0.21
Matches are distributed among these distances:
26 13 0.10
27 32 0.24
28 7 0.05
34 7 0.05
35 63 0.47
36 13 0.10
ACGTcount: A:0.43, C:0.06, G:0.33, T:0.18
Consensus pattern (34 bp):
ATGGGCATGGAATAAAAAATTGAAGGCATGGGTG
Found at i:750626 original size:27 final size:27
Alignment explanation
Indices: 750596--750776 Score: 168
Period size: 27 Copynumber: 6.1 Consensus size: 27
750586 GCATGGAGTG
750596 ATGGGCATGGAATAAAAAAATGAAGGC
1 ATGGGCATGGAATAAAAAAATGAAGGC
*
750623 ATGGGCATGGAATAAAAAATTGAAGGC
1 ATGGGCATGGAATAAAAAAATGAAGGC
750650 ATGGAGTGATGGGCATGGAAT-AAAAAATGAAGGC
1 --------ATGGGCATGGAATAAAAAAATGAAGGC
750684 ATGGGCATGGAATAAAAAAATTGAAGGC
1 ATGGGCATGGAATAAAAAAA-TGAAGGC
750712 ATGGGATGATGGGCATGGAATAAAAAAATGAAGGC
1 --------ATGGGCATGGAATAAAAAAATGAAGGC
* *
750747 ATGGGCATTGAAT-AAGAAATGAAGGC
1 ATGGGCATGGAATAAAAAAATGAAGGC
750773 ATGG
1 ATGG
750777 AATGATGGAA
Statistics
Matches: 132, Mismatches: 4, Indels: 37
0.76 0.02 0.21
Matches are distributed among these distances:
26 29 0.22
27 44 0.33
28 7 0.05
34 12 0.09
35 20 0.15
36 20 0.15
ACGTcount: A:0.44, C:0.07, G:0.32, T:0.18
Consensus pattern (27 bp):
ATGGGCATGGAATAAAAAAATGAAGGC
Found at i:750629 original size:62 final size:62
Alignment explanation
Indices: 750531--750784 Score: 433
Period size: 62 Copynumber: 4.1 Consensus size: 62
750521 AAACACGGAA
750531 TGATGGGCATGGAATAAACAAAATGAAGGCATGGGCATGGAATAAAAAATTGAAGGCATGGAG
1 TGATGGGCATGGAATAAA-AAAATGAAGGCATGGGCATGGAATAAAAAATTGAAGGCATGGAG
750594 TGATGGGCATGGAATAAAAAAATGAAGGCATGGGCATGGAATAAAAAATTGAAGGCATGGAG
1 TGATGGGCATGGAATAAAAAAATGAAGGCATGGGCATGGAATAAAAAATTGAAGGCATGGAG
750656 TGATGGGCATGGAAT-AAAAAATGAAGGCATGGGCATGGAATAAAAAAATTGAAGGCATGG-G
1 TGATGGGCATGGAATAAAAAAATGAAGGCATGGGCATGGAAT-AAAAAATTGAAGGCATGGAG
* * *
750717 ATGATGGGCATGGAATAAAAAAATGAAGGCATGGGCATTGAATAAGAAA-TGAAGGCATGGAA
1 -TGATGGGCATGGAATAAAAAAATGAAGGCATGGGCATGGAATAAAAAATTGAAGGCATGGAG
750779 TGATGG
1 TGATGG
750785 AAAAAGGAAA
Statistics
Matches: 184, Mismatches: 3, Indels: 10
0.93 0.02 0.05
Matches are distributed among these distances:
61 44 0.24
62 97 0.53
63 43 0.23
ACGTcount: A:0.43, C:0.07, G:0.32, T:0.18
Consensus pattern (62 bp):
TGATGGGCATGGAATAAAAAAATGAAGGCATGGGCATGGAATAAAAAATTGAAGGCATGGAG
Found at i:750687 original size:26 final size:26
Alignment explanation
Indices: 750658--750776 Score: 121
Period size: 26 Copynumber: 4.2 Consensus size: 26
750648 GCATGGAGTG
750658 ATGGGCATGGAATAAAAAATGAAGGC
1 ATGGGCATGGAATAAAAAATGAAGGC
750684 ATGGGCATGGAATAAAAAAATTGAAGGC
1 ATGGGCATGGAAT-AAAAAA-TGAAGGC
750712 ATGGGATGATGGGCATGGAATAAAAAAATGAAGGC
1 --------ATGGGCATGGAATAAA-AAATGAAGGC
* *
750747 ATGGGCATTGAATAAGAAATGAAGGC
1 ATGGGCATGGAATAAAAAATGAAGGC
750773 ATGG
1 ATGG
750777 AATGATGGAA
Statistics
Matches: 80, Mismatches: 2, Indels: 22
0.77 0.02 0.21
Matches are distributed among these distances:
26 27 0.34
27 20 0.25
28 7 0.09
35 10 0.12
36 16 0.20
ACGTcount: A:0.44, C:0.07, G:0.32, T:0.18
Consensus pattern (26 bp):
ATGGGCATGGAATAAAAAATGAAGGC
Found at i:750727 original size:36 final size:35
Alignment explanation
Indices: 750684--750751 Score: 127
Period size: 36 Copynumber: 1.9 Consensus size: 35
750674 AAATGAAGGC
750684 ATGGGCATGGAATAAAAAAATTGAAGGCATGGGATG
1 ATGGGCATGGAATAAAAAAA-TGAAGGCATGGGATG
750720 ATGGGCATGGAATAAAAAAATGAAGGCATGGG
1 ATGGGCATGGAATAAAAAAATGAAGGCATGGG
750752 CATTGAATAA
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
35 12 0.38
36 20 0.62
ACGTcount: A:0.43, C:0.06, G:0.34, T:0.18
Consensus pattern (35 bp):
ATGGGCATGGAATAAAAAAATGAAGGCATGGGATG
Found at i:752114 original size:53 final size:50
Alignment explanation
Indices: 752007--752131 Score: 139
Period size: 53 Copynumber: 2.4 Consensus size: 50
751997 AATTGCTCGT
*
752007 AATC-GGGATACTCCAACCCCGGTTTTATTTTCAAAACACCAATTTCCTTT
1 AATCGGGGATACTCCAACCCCGGTTTTATTTTCAAAACACCAATTT-CTTC
* **
752057 AATCGAGGGGATACTCCAACCCCGGTTTTA-TTTCTAAAATATTAATTT-TTCAC
1 AATC--GGGGATACTCCAACCCCGGTTTTATTTTC-AAAACACCAATTTCTT--C
752110 AATCGGGGATACTCCAACCCCG
1 AATCGGGGATACTCCAACCCCG
752132 TTATTTTCGA
Statistics
Matches: 65, Mismatches: 4, Indels: 11
0.81 0.05 0.14
Matches are distributed among these distances:
50 4 0.06
51 20 0.31
52 4 0.06
53 37 0.57
ACGTcount: A:0.29, C:0.26, G:0.14, T:0.31
Consensus pattern (50 bp):
AATCGGGGATACTCCAACCCCGGTTTTATTTTCAAAACACCAATTTCTTC
Found at i:752278 original size:157 final size:158
Alignment explanation
Indices: 752060--752367 Score: 501
Period size: 157 Copynumber: 2.0 Consensus size: 158
752050 TTCCTTTAAT
* **
752060 CGAGGGGATACTCCAACCCCGGTTTTATTTCTAAAATATTAATTTTTCACAATCGGGGATACTCC
1 CGAGGGGATACTCCAACCCCGGTTTTATTTCTAAAACACCAATTTTTCACAATCGGGGATACTCC
* * *
752125 AACCCCGTTATTTTCGAGGGGATACTCCAACC-CGGTTTTATCTCTAAAATATTAATTTTTCACA
66 AACCCCGTTATTTCCGAGGGGATACTCCAACCTCGGTTTTATCTCTAAAACATCAATTTTTCACA
*
752189 ATCGGGGATACTCCAACCCCGTTATTTC
131 ATCCGGGATACTCCAACCCCGTTATTTC
*
752217 CGAGGGGATACTCCAACCCCGGTTTTATTTCTAAAACACCAATTTTTCATAATCGGGGATACTCC
1 CGAGGGGATACTCCAACCCCGGTTTTATTTCTAAAACACCAATTTTTCACAATCGGGGATACTCC
* *
752282 AACCCCGTTATTTCCGAGGGGATACTCCAACCTCGGTTTTATTTCTAAAACATCAATTTTTCATA
66 AACCCCGTTATTTCCGAGGGGATACTCCAACCTCGGTTTTATCTCTAAAACATCAATTTTTCACA
**
752347 ATCCGGGATACTTTAACCCCG
131 ATCCGGGATACTCCAACCCCG
752368 ATTTTATTTT
Statistics
Matches: 138, Mismatches: 12, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
157 92 0.67
158 46 0.33
ACGTcount: A:0.27, C:0.26, G:0.15, T:0.32
Consensus pattern (158 bp):
CGAGGGGATACTCCAACCCCGGTTTTATTTCTAAAACACCAATTTTTCACAATCGGGGATACTCC
AACCCCGTTATTTCCGAGGGGATACTCCAACCTCGGTTTTATCTCTAAAACATCAATTTTTCACA
ATCCGGGATACTCCAACCCCGTTATTTC
Found at i:752286 original size:79 final size:79
Alignment explanation
Indices: 752060--752367 Score: 492
Period size: 79 Copynumber: 3.9 Consensus size: 79
752050 TTCCTTTAAT
* *
752060 CGAGGGGATACTCCAACCCCGGTTTTATTTCTAAAATATTAATTTTTCACAATCGGGGATACTCC
1 CGAGGGGATACTCCAACCCCGGTTTTATTTCTAAAACATCAATTTTTCACAATCGGGGATACTCC
*
752125 AACCCCGTTATTTT
66 AACCCCGTTATTTC
* * *
752139 CGAGGGGATACTCCAA-CCCGGTTTTATCTCTAAAATATTAATTTTTCACAATCGGGGATACTCC
1 CGAGGGGATACTCCAACCCCGGTTTTATTTCTAAAACATCAATTTTTCACAATCGGGGATACTCC
752203 AACCCCGTTATTTC
66 AACCCCGTTATTTC
* *
752217 CGAGGGGATACTCCAACCCCGGTTTTATTTCTAAAACACCAATTTTTCATAATCGGGGATACTCC
1 CGAGGGGATACTCCAACCCCGGTTTTATTTCTAAAACATCAATTTTTCACAATCGGGGATACTCC
752282 AACCCCGTTATTTC
66 AACCCCGTTATTTC
* * * **
752296 CGAGGGGATACTCCAACCTCGGTTTTATTTCTAAAACATCAATTTTTCATAATCCGGGATACTTT
1 CGAGGGGATACTCCAACCCCGGTTTTATTTCTAAAACATCAATTTTTCACAATCGGGGATACTCC
752361 AACCCCG
66 AACCCCG
752368 ATTTTATTTT
Statistics
Matches: 216, Mismatches: 12, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
78 76 0.35
79 140 0.65
ACGTcount: A:0.27, C:0.26, G:0.15, T:0.32
Consensus pattern (79 bp):
CGAGGGGATACTCCAACCCCGGTTTTATTTCTAAAACATCAATTTTTCACAATCGGGGATACTCC
AACCCCGTTATTTC
Found at i:753445 original size:19 final size:18
Alignment explanation
Indices: 753421--753518 Score: 72
Period size: 19 Copynumber: 5.8 Consensus size: 18
753411 TAGCTTACAT
753421 TGTATCGATACAAAACTTA
1 TGTATCGATACAAAA-TTA
753440 TGTATCGATAC---A-T-
1 TGTATCGATACAAAATTA
*
753453 TGTATCGATACAACACTTA
1 TGTATCGATACAA-AATTA
753472 TGTATCGATAC---A-T-
1 TGTATCGATACAAAATTA
*
753485 TGTATCGATACAACATTTTA
1 TGTATCGATACAA-A-ATTA
753505 TGTATCGATACAAA
1 TGTATCGATACAAA
753519 TCGTTGAAAT
Statistics
Matches: 63, Mismatches: 3, Indels: 26
0.68 0.03 0.28
Matches are distributed among these distances:
13 22 0.35
14 2 0.03
16 1 0.02
18 1 0.02
19 24 0.38
20 13 0.21
ACGTcount: A:0.37, C:0.16, G:0.12, T:0.35
Consensus pattern (18 bp):
TGTATCGATACAAAATTA
Found at i:753457 original size:32 final size:32
Alignment explanation
Indices: 753416--753516 Score: 166
Period size: 32 Copynumber: 3.1 Consensus size: 32
753406 GGCAGTAGCT
753416 TACATTGTATCGATACAAAACTTATGTATCGA
1 TACATTGTATCGATACAAAACTTATGTATCGA
*
753448 TACATTGTATCGATACAACACTTATGTATCGA
1 TACATTGTATCGATACAAAACTTATGTATCGA
**
753480 TACATTGTATCGATACAACATTTTATGTATCGA
1 TACATTGTATCGATACAA-AACTTATGTATCGA
753513 TACA
1 TACA
753517 AATCGTTGAA
Statistics
Matches: 64, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
32 49 0.77
33 15 0.23
ACGTcount: A:0.36, C:0.17, G:0.12, T:0.36
Consensus pattern (32 bp):
TACATTGTATCGATACAAAACTTATGTATCGA
Found at i:753458 original size:13 final size:13
Alignment explanation
Indices: 753440--753496 Score: 60
Period size: 13 Copynumber: 3.9 Consensus size: 13
753430 ACAAAACTTA
753440 TGTATCGATACAT
1 TGTATCGATACAT
753453 TGTATCGATACAACACTT
1 TGTATCGAT---ACA--T
753471 ATGTATCGATACAT
1 -TGTATCGATACAT
753485 TGTATCGATACA
1 TGTATCGATACA
753497 ACATTTTATG
Statistics
Matches: 38, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
13 21 0.55
14 1 0.03
16 6 0.16
18 1 0.03
19 9 0.24
ACGTcount: A:0.33, C:0.18, G:0.14, T:0.35
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:754618 original size:49 final size:49
Alignment explanation
Indices: 754293--755071 Score: 931
Period size: 49 Copynumber: 16.1 Consensus size: 49
754283 CTTAGGAATG
* *
754293 TTAAAGATGAAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGAC
1 TTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC
*
754342 TTAAAGATGACAAAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC
1 TTAAAGATG---AAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC
*
754394 TTAAAGATGACAAAGGCGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC
1 TTAAAGATG---AAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC
* * * * *
754446 TT----A--AAGGTGCCAATGTGCTGAATCAAGGCCAGTGACATTGGGC
1 TTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC
*
754489 TTAAAAGATGAGGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC
1 TT-AAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC
* * * *
754539 TT---G--G-AGTTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGAC
1 TTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC
*
754582 TTAAAGATGAGGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC
1 TTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC
* * * * * * *
754631 TT---G--G-AGTTGCCAATGTACTTATTCAAGGCTAGCTACATTGGAC
1 TTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC
*
754674 TTAAAGATGACAAAGGCGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC
1 TTAAAGATG---AAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC
* *
754726 TTAAAGATGATGGTGCCAATATGCTGATTCAAGGCCAGCAATATTGGAC
1 TTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC
*
754775 TTAAAGATGATGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC
1 TTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC
* *
754824 TTAAAGATGACAAAGGCGCCAATATGCTAATTCAAGGCCAGCGATATTGGAC
1 TTAAAGATG---AAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC
*
754876 TTAAAGATGATGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC
1 TTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC
754925 TTAAAGATGACAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC
1 TTAAAGATG---AAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC
* * *
754977 TT----A--AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGAC
1 TTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC
* * *
755020 TTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGTGATATTGGGC
1 TTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC
755069 TTA
1 TTA
755072 GAAGGGTTGC
Statistics
Matches: 631, Mismatches: 62, Indels: 74
0.82 0.08 0.10
Matches are distributed among these distances:
43 144 0.23
44 2 0.00
46 4 0.01
47 1 0.00
48 5 0.01
49 223 0.35
50 36 0.06
52 216 0.34
ACGTcount: A:0.32, C:0.18, G:0.26, T:0.25
Consensus pattern (49 bp):
TTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC
Found at i:754725 original size:144 final size:146
Alignment explanation
Indices: 754293--755073 Score: 876
Period size: 144 Copynumber: 5.4 Consensus size: 146
754283 CTTAGGAATG
* * * *
754293 TTAAAGATGAAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACAAAGA
1 TTAAAGATGATGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT--AGA-G----AGG
754358 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGACAAAGGCGCCAATATGCTG
59 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGACAAAGGCGCCAATATGCTG
*
754423 ATTCAAGGCCAGCGATATTGGAC
124 ATTCAAGGCCAGCGACATTGGAC
* * * * *
754446 TT--A-A--A-GGTGCCAATGTGCTGAATCAAGGCCAGTGACATTGGGCTTAAAAGATGAGGGTG
1 TTAAAGATGATGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT---AGA-GA-GGTG
** *
754505 CCAATATGCTGATTCAAGGCCAGCGATATTGGACTT---G--G----AGTTGCCAATGTGCTGAT
61 CCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGACAAAGGCGCCAATATGCTGAT
*
754561 TCAAGGCCAGCTACATTGGAC
126 TCAAGGCCAGCGACATTGGAC
* *
754582 TTAAAGATGAGGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT-G-GAGTTGCCAAT
1 TTAAAGATGATGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAGAGAGGTGCCAAT
* * * * * *
754645 GTACTTATTCAAGGCTAGCTACATTGGACTTAAAGATGACAAAGGCGCCAATATGCTGATTCAAG
66 ATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGACAAAGGCGCCAATATGCTGATTCAAG
*
754710 GCCAGCGATATTGGAC
131 GCCAGCGACATTGGAC
*
754726 TTAAAGATGATGGTGCCAATATGCTGATTCAAGGCCAGCAATATTGGACTTAAAGATGATGGTGC
1 TTAAAGATGATGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT--AGA-GA-GGTGC
*
754791 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGACAAAGGCGCCAATATGCTAATT
62 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGACAAAGGCGCCAATATGCTGATT
*
754856 CAAGGCCAGCGATATTGGAC
127 CAAGGCCAGCGACATTGGAC
754876 TTAAAGATGATGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGACAAAGG
1 TTAAAGATGATGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT--AGA-G----AGG
* *
754941 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC-T-----T---AAAGGTGCCAATGTGCTG
59 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGACAAAGGCGCCAATATGCTG
*
754997 ATTCAAGGCCAGCTACATTGGAC
124 ATTCAAGGCCAGCGACATTGGAC
* * * *
755020 TTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGTGATATTGGGCTTAGA
1 TTAAAGATGATGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAGA
755074 AGGGTTGCCA
Statistics
Matches: 555, Mismatches: 46, Indels: 65
0.83 0.07 0.10
Matches are distributed among these distances:
135 33 0.06
136 38 0.07
138 3 0.01
139 1 0.00
140 2 0.00
141 1 0.00
142 39 0.07
144 167 0.30
145 39 0.07
147 39 0.07
148 8 0.01
149 2 0.00
150 140 0.25
151 1 0.00
152 1 0.00
153 40 0.07
154 1 0.00
ACGTcount: A:0.32, C:0.18, G:0.26, T:0.25
Consensus pattern (146 bp):
TTAAAGATGATGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAGAGAGGTGCCAAT
ATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGACAAAGGCGCCAATATGCTGATTCAAG
GCCAGCGACATTGGAC
Found at i:754857 original size:101 final size:99
Alignment explanation
Indices: 754293--755071 Score: 923
Period size: 101 Copynumber: 8.0 Consensus size: 99
754283 CTTAGGAATG
* * * *
754293 TTAAAGATGAAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACAAAGA
1 TTAAAGATGATGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATG--AAAGG
754358 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC
64 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC
* *
754394 TTAAAGATGACAAAGGCGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC-T-----T-AAAG
1 TTAAAGATG---ATGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAAG
* * * * *
754452 GTGCCAATGTGCTGAATCAAGGCCAGTGACATTGGGC
63 GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC
* *
754489 TTAAAAGATGAGGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT---G--G--AGTT
1 TT-AAAGATGATGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAAGGT
* * *
754547 GCCAATGTGCTGATTCAAGGCCAGCTACATTGGAC
65 GCCAATATGCTGATTCAAGGCCAGCGATATTGGAC
* *
754582 TTAAAGATGAGGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT---G--G--AGTTG
1 TTAAAGATGATGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAAGGTG
* * * * * *
754640 CCAATGTACTTATTCAAGGCTAGCTACATTGGAC
66 CCAATATGCTGATTCAAGGCCAGCGATATTGGAC
* * *
754674 TTAAAGATGACAAAGGCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATG-ATG
1 TTAAAGATG---ATGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAAG
*
754738 GTGCCAATATGCTGATTCAAGGCCAGCAATATTGGAC
63 GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC
754775 TTAAAGATGATGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGACAAAGG
1 TTAAAGATGATGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATG--AAAGG
* *
754840 CGCCAATATGCTAATTCAAGGCCAGCGATATTGGAC
64 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC
754876 TTAAAGATGATGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGACAAAGG
1 TTAAAGATGATGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATG--AAAGG
754941 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC
64 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC
* * *
754977 TT--A-A--A-GGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT-AAAGGTG
1 TTAAAGATGATGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAAGGTG
* *
755035 CCAATATGCTGATTCAAGGCCAGTGATATTGGGC
66 CCAATATGCTGATTCAAGGCCAGCGATATTGGAC
755069 TTA
1 TTA
755072 GAAGGGTTGC
Statistics
Matches: 616, Mismatches: 42, Indels: 48
0.87 0.06 0.07
Matches are distributed among these distances:
92 137 0.22
93 74 0.12
94 1 0.00
95 120 0.19
96 8 0.01
98 50 0.08
99 1 0.00
100 1 0.00
101 186 0.30
103 1 0.00
104 37 0.06
ACGTcount: A:0.32, C:0.18, G:0.26, T:0.25
Consensus pattern (99 bp):
TTAAAGATGATGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAAGGTG
CCAATATGCTGATTCAAGGCCAGCGATATTGGAC
Found at i:755156 original size:32 final size:33
Alignment explanation
Indices: 755071--755338 Score: 404
Period size: 33 Copynumber: 8.2 Consensus size: 33
755061 TATTGGGCTT
*
755071 AGAAGGGTTGCCACCGACTTGTATGGGCTTTAG
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
* * *
755104 AGAATGGTTACCACCTACTTGTGTGGGCTTTAG
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
*
755137 AG-AGGGTTGCCACCGACTTGAGTGGGCTTT-G
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
755168 AGAAGGGTTGCCACCGACTTGTGTGGGCTTT-G
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
*
755200 AGAAGGGTTGCCACCGACTTGTGTGGGCTTCAG
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
755233 AAGAA-GGTTGCCACCGACTTGTGTGGGCTTTAG
1 -AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
755266 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
*
755299 AAGAA-GGTTGCCACTGACTTGTGTGGGCTTTA-
1 -AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
*
755331 AAAAGGGT
1 AGAAGGGT
755339 GAAAGATGCC
Statistics
Matches: 216, Mismatches: 13, Indels: 13
0.89 0.05 0.05
Matches are distributed among these distances:
31 6 0.03
32 89 0.41
33 113 0.52
34 8 0.04
ACGTcount: A:0.20, C:0.18, G:0.34, T:0.28
Consensus pattern (33 bp):
AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
Found at i:755378 original size:34 final size:33
Alignment explanation
Indices: 755340--755498 Score: 137
Period size: 34 Copynumber: 4.8 Consensus size: 33
755330 AAAAAGGGTG
*
755340 AAAGATGCCACGAAGTTGTGGAC-TTAAAAGGAA
1 AAAGATGCCACGGAGTTGTGGACTTTAAAA-GAA
*
755373 CAAAGAGTGCCACGGAGTTGTGGGCTTTGAAAAGAA
1 -AAAGA-TGCCACGGAGTTGTGGACTTT-AAAAGAA
* * * *
755409 TAAGGTGCCAAGGAGTTGTGGGCTTTAAAAAGAA
1 AAAGATGCCACGGAGTTGTGGACTTT-AAAAGAA
* * *
755443 AAAGGTGCCACGGAGTCGTGGACTTT---GGAA
1 AAAGATGCCACGGAGTTGTGGACTTTAAAAGAA
* * *
755473 AGAGATGCCACTGAATTGTGGACTTT
1 AAAGATGCCACGGAGTTGTGGACTTT
755499 GAGACAAGAT
Statistics
Matches: 106, Mismatches: 16, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
30 24 0.23
34 54 0.51
35 19 0.18
36 5 0.05
37 4 0.04
ACGTcount: A:0.33, C:0.13, G:0.31, T:0.22
Consensus pattern (33 bp):
AAAGATGCCACGGAGTTGTGGACTTTAAAAGAA
Found at i:755384 original size:35 final size:33
Alignment explanation
Indices: 755340--755468 Score: 143
Period size: 34 Copynumber: 3.8 Consensus size: 33
755330 AAAAAGGGTG
* *
755340 AAAGATGCCACGAAGTTGTGGAC-TTAAAAGGAA
1 AAAGGTGCCACGGAGTTGTGGACTTTAAAA-GAA
*
755373 CAAAGAGTGCCACGGAGTTGTGGGCTTTGAAAAGAA
1 -AAAG-GTGCCACGGAGTTGTGGACTTT-AAAAGAA
* * *
755409 TAAGGTGCCAAGGAGTTGTGGGCTTTAAAAAGAA
1 AAAGGTGCCACGGAGTTGTGGACTTT-AAAAGAA
*
755443 AAAGGTGCCACGGAGTCGTGGACTTT
1 AAAGGTGCCACGGAGTTGTGGACTTT
755469 GGAAAGAGAT
Statistics
Matches: 82, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
34 54 0.66
35 19 0.23
36 5 0.06
37 4 0.05
ACGTcount: A:0.34, C:0.13, G:0.32, T:0.21
Consensus pattern (33 bp):
AAAGGTGCCACGGAGTTGTGGACTTTAAAAGAA
Done.