Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold30
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2650045
ACGTcount: A:0.30, C:0.17, G:0.18, T:0.30
Warning! 144233 characters in sequence are not A, C, G, or T
File 6 of 17
Found at i:755482 original size:30 final size:30
Alignment explanation
Indices: 755448--755571 Score: 108
Period size: 30 Copynumber: 4.0 Consensus size: 30
755438 AAGAAAAAGG
*
755448 TGCCACGGAGTCGTGGACTTTGGAAAGAGA
1 TGCCACTGAGTCGTGGACTTTGGAAAGAGA
* * *
755478 TGCCACTGAATTGTGGACTTTGAGACA-AGA
1 TGCCACTGAGTCGTGGACTTTG-GAAAGAGA
* **
755508 TGCCACTAAGTCGTGGACATTAAGAAGAGAAGA
1 TGCCACTGAGTCGTGGAC-TTTGGAA-AG-AGA
* *
755541 TGCCACTGAGTCATGGGCTTT-GAGAAGAGA
1 TGCCACTGAGTCGTGGACTTTGGA-AAGAGA
755571 T
1 T
755572 TTGAAGAATT
Statistics
Matches: 74, Mismatches: 14, Indels: 12
0.74 0.14 0.12
Matches are distributed among these distances:
30 43 0.58
31 10 0.14
32 3 0.04
33 18 0.24
ACGTcount: A:0.31, C:0.16, G:0.31, T:0.23
Consensus pattern (30 bp):
TGCCACTGAGTCGTGGACTTTGGAAAGAGA
Found at i:755544 original size:33 final size:33
Alignment explanation
Indices: 755504--755570 Score: 89
Period size: 33 Copynumber: 2.0 Consensus size: 33
755494 ACTTTGAGAC
*
755504 AAGATGCCACTAAGTCGTGGACATTAAGAAGAG
1 AAGATGCCACTAAGTCATGGACATTAAGAAGAG
* * * *
755537 AAGATGCCACTGAGTCATGGGCTTTGAGAAGAG
1 AAGATGCCACTAAGTCATGGACATTAAGAAGAG
755570 A
1 A
755571 TTTGAAGAAT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.36, C:0.15, G:0.30, T:0.19
Consensus pattern (33 bp):
AAGATGCCACTAAGTCATGGACATTAAGAAGAG
Found at i:755697 original size:16 final size:17
Alignment explanation
Indices: 755666--755703 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
755656 GATGCAAATA
* *
755666 ATGATGTTATTGATGTT
1 ATGATGTCATTGATGTC
755683 ATGATGTCA-TGATGTC
1 ATGATGTCATTGATGTC
755699 ATGAT
1 ATGAT
755704 TACAGCACAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
16 11 0.58
17 8 0.42
ACGTcount: A:0.26, C:0.05, G:0.24, T:0.45
Consensus pattern (17 bp):
ATGATGTCATTGATGTC
Found at i:756565 original size:17 final size:16
Alignment explanation
Indices: 756525--756577 Score: 58
Period size: 16 Copynumber: 3.4 Consensus size: 16
756515 CTTTCTTCTT
*
756525 TTTTTTG-TTTGTTTG
1 TTTTTTGTTTTGTTTC
*
756540 TTTCTTT-TTTT-TTCC
1 TTT-TTTGTTTTGTTTC
756555 TTTTTTGTTTTGTTTC
1 TTTTTTGTTTTGTTTC
756571 TTTTTTG
1 TTTTTTG
756578 GAAAAAAACA
Statistics
Matches: 31, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
14 3 0.10
15 12 0.39
16 16 0.52
ACGTcount: A:0.00, C:0.08, G:0.11, T:0.81
Consensus pattern (16 bp):
TTTTTTGTTTTGTTTC
Found at i:756573 original size:27 final size:24
Alignment explanation
Indices: 756516--756576 Score: 77
Period size: 27 Copynumber: 2.4 Consensus size: 24
756506 GGGTTTTTCC
*
756516 TTTCTTCTTTTTTTTGTTTGTTTG
1 TTTCTTTTTTTTTTTGTTTGTTTG
*
756540 TTTCTTTTTTTTTCCTTTTTTGTTTTG
1 TTTCTTTTTTTTT--TTGTTTG-TTTG
756567 TTTCTTTTTT
1 TTTCTTTTTT
756577 GGAAAAAAAC
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
24 12 0.38
26 6 0.19
27 14 0.44
ACGTcount: A:0.00, C:0.10, G:0.08, T:0.82
Consensus pattern (24 bp):
TTTCTTTTTTTTTTTGTTTGTTTG
Found at i:756833 original size:16 final size:15
Alignment explanation
Indices: 756814--756858 Score: 56
Period size: 15 Copynumber: 3.0 Consensus size: 15
756804 CCTTTGCACC
*
756814 TTTTTTTCTGTGTTT
1 TTTTTTTTTGTGTTT
*
756829 TTTTTTTGTTTTG-TT
1 TTTTTTT-TTGTGTTT
756844 TTTTTTTTTGTGTTT
1 TTTTTTTTTGTGTTT
756859 ACTTTTGACT
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
14 4 0.16
15 18 0.72
16 3 0.12
ACGTcount: A:0.00, C:0.02, G:0.13, T:0.84
Consensus pattern (15 bp):
TTTTTTTTTGTGTTT
Found at i:756864 original size:19 final size:17
Alignment explanation
Indices: 756826--756864 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
756816 TTTTTCTGTG
*
756826 TTTTTTTTTTGTTTTGT
1 TTTTTTTTTTGTTTTCT
756843 TTTTTTTTTTGTGTTTACT
1 TTTTTTTTTTGT-TTT-CT
756862 TTT
1 TTT
756865 GACTTTTTCA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 12 0.63
18 3 0.16
19 4 0.21
ACGTcount: A:0.03, C:0.03, G:0.10, T:0.85
Consensus pattern (17 bp):
TTTTTTTTTTGTTTTCT
Found at i:763847 original size:52 final size:52
Alignment explanation
Indices: 763769--763949 Score: 344
Period size: 52 Copynumber: 3.5 Consensus size: 52
763759 CGAAATATGA
*
763769 AAATTTGCCTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTTATAGTGTATCGATACATCTGGGC
763821 AAATTTGCCTGCATGTATCGATACATTTTATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTTATAGTGTATCGATACATCTGGGC
*
763873 AAATTTGCCTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTTATAGTGTATCGATACATCTGGGC
763925 AAATTTGCCTGCATGTATCGATACA
1 AAATTTGCCTGCATGTATCGATACA
763950 AAGATCAGTG
Statistics
Matches: 127, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 127 1.00
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.35
Consensus pattern (52 bp):
AAATTTGCCTGCATGTATCGATACATTTTATAGTGTATCGATACATCTGGGC
Found at i:763976 original size:13 final size:13
Alignment explanation
Indices: 763958--763982 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
763948 CAAAGATCAG
763958 TGTATCGATACAA
1 TGTATCGATACAA
763971 TGTATCGATACA
1 TGTATCGATACA
763983 TTTTCTTGGC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:764029 original size:19 final size:18
Alignment explanation
Indices: 764005--764102 Score: 72
Period size: 19 Copynumber: 5.8 Consensus size: 18
763995 TAGCTTACAT
764005 TGTATCGATACAAAACTTA
1 TGTATCGATACAAAA-TTA
764024 TGTATCGATAC---A-T-
1 TGTATCGATACAAAATTA
*
764037 TGTATCGATACAACACTTA
1 TGTATCGATACAA-AATTA
764056 TGTATCGATAC---A-T-
1 TGTATCGATACAAAATTA
*
764069 TGTATCGATACAACATTTTA
1 TGTATCGATACAA-A-ATTA
764089 TGTATCGATACAAA
1 TGTATCGATACAAA
764103 TCGTTGAAAT
Statistics
Matches: 63, Mismatches: 3, Indels: 26
0.68 0.03 0.28
Matches are distributed among these distances:
13 22 0.35
14 2 0.03
16 1 0.02
18 1 0.02
19 24 0.38
20 13 0.21
ACGTcount: A:0.37, C:0.16, G:0.12, T:0.35
Consensus pattern (18 bp):
TGTATCGATACAAAATTA
Found at i:764041 original size:32 final size:32
Alignment explanation
Indices: 764000--764100 Score: 166
Period size: 32 Copynumber: 3.1 Consensus size: 32
763990 GGCAGTAGCT
764000 TACATTGTATCGATACAAAACTTATGTATCGA
1 TACATTGTATCGATACAAAACTTATGTATCGA
*
764032 TACATTGTATCGATACAACACTTATGTATCGA
1 TACATTGTATCGATACAAAACTTATGTATCGA
**
764064 TACATTGTATCGATACAACATTTTATGTATCGA
1 TACATTGTATCGATACAA-AACTTATGTATCGA
764097 TACA
1 TACA
764101 AATCGTTGAA
Statistics
Matches: 64, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
32 49 0.77
33 15 0.23
ACGTcount: A:0.36, C:0.17, G:0.12, T:0.36
Consensus pattern (32 bp):
TACATTGTATCGATACAAAACTTATGTATCGA
Found at i:764042 original size:13 final size:13
Alignment explanation
Indices: 764024--764080 Score: 60
Period size: 13 Copynumber: 3.9 Consensus size: 13
764014 ACAAAACTTA
764024 TGTATCGATACAT
1 TGTATCGATACAT
764037 TGTATCGATACAACACTT
1 TGTATCGAT---ACA--T
764055 ATGTATCGATACAT
1 -TGTATCGATACAT
764069 TGTATCGATACA
1 TGTATCGATACA
764081 ACATTTTATG
Statistics
Matches: 38, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
13 21 0.55
14 1 0.03
16 6 0.16
18 1 0.03
19 9 0.24
ACGTcount: A:0.33, C:0.18, G:0.14, T:0.35
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:767131 original size:20 final size:20
Alignment explanation
Indices: 767106--767177 Score: 117
Period size: 20 Copynumber: 3.6 Consensus size: 20
767096 AAAACCTAGA
*
767106 TGTATCAATACAATGTTCTT
1 TGTATCGATACAATGTTCTT
*
767126 TGTATCGATACAATGTTTTT
1 TGTATCGATACAATGTTCTT
767146 TGTATCGATACAATGTTCTT
1 TGTATCGATACAATGTTCTT
*
767166 TGTATTGATACA
1 TGTATCGATACA
767178 TTGTATTGAT
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.28, C:0.12, G:0.14, T:0.46
Consensus pattern (20 bp):
TGTATCGATACAATGTTCTT
Found at i:767183 original size:13 final size:13
Alignment explanation
Indices: 767165--767204 Score: 71
Period size: 13 Copynumber: 3.1 Consensus size: 13
767155 ACAATGTTCT
767165 TTGTATTGATACA
1 TTGTATTGATACA
767178 TTGTATTGATACA
1 TTGTATTGATACA
*
767191 ATGTATTGATACA
1 TTGTATTGATACA
767204 T
1 T
767205 GGGTTACTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.33, C:0.07, G:0.15, T:0.45
Consensus pattern (13 bp):
TTGTATTGATACA
Found at i:769759 original size:19 final size:19
Alignment explanation
Indices: 769732--769819 Score: 71
Period size: 19 Copynumber: 4.9 Consensus size: 19
769722 TGTATCGATA
* *
769732 CATTCTATCAATACATGTT
1 CATTGTATCGATACATGTT
769751 CATTGTATCGAT--A----
1 CATTGTATCGATACATGTT
* *
769764 CATTGTATCAATACATCTT
1 CATTGTATCGATACATGTT
**
769783 CATTGTATCGATACATGCA
1 CATTGTATCGATACATGTT
769802 CTATTGTATCGATACATG
1 C-ATTGTATCGATACATG
769820 AAACTGGCAG
Statistics
Matches: 55, Mismatches: 7, Indels: 13
0.73 0.09 0.17
Matches are distributed among these distances:
13 11 0.20
15 1 0.02
17 1 0.02
19 26 0.47
20 16 0.29
ACGTcount: A:0.31, C:0.19, G:0.11, T:0.39
Consensus pattern (19 bp):
CATTGTATCGATACATGTT
Found at i:769762 original size:32 final size:32
Alignment explanation
Indices: 769721--769798 Score: 138
Period size: 32 Copynumber: 2.4 Consensus size: 32
769711 AGATTATGCT
*
769721 TTGTATCGATACATTCTATCAATACATGTTCA
1 TTGTATCGATACATTCTATCAATACATCTTCA
*
769753 TTGTATCGATACATTGTATCAATACATCTTCA
1 TTGTATCGATACATTCTATCAATACATCTTCA
769785 TTGTATCGATACAT
1 TTGTATCGATACAT
769799 GCACTATTGT
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
32 44 1.00
ACGTcount: A:0.31, C:0.18, G:0.10, T:0.41
Consensus pattern (32 bp):
TTGTATCGATACATTCTATCAATACATCTTCA
Found at i:776256 original size:34 final size:34
Alignment explanation
Indices: 776208--776410 Score: 316
Period size: 34 Copynumber: 6.0 Consensus size: 34
776198 AAATATTTTA
* * * *
776208 CTCACCTAACACATTACCTAACACACCTAATATT
1 CTCACCAAATACATCACCTAACACACCTAACATT
* * * *
776242 TTCACCAAATACATTACCTAACACATCTAATATT
1 CTCACCAAATACATCACCTAACACACCTAACATT
*
776276 CTTACCAAATACATCACCTAACACACCTAACATT
1 CTCACCAAATACATCACCTAACACACCTAACATT
776310 CTCACCAAATACATCACCTAACACACCTAACATT
1 CTCACCAAATACATCACCTAACACACCTAACATT
776344 CTCACCAAATACATCACCTAACACACCTAACATT
1 CTCACCAAATACATCACCTAACACACCTAACATT
*
776378 CTCACCAAATACATTACCTAACACACCTAACAT
1 CTCACCAAATACATCACCTAACACACCTAACAT
776411 GCTTCAGCTA
Statistics
Matches: 158, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
34 158 1.00
ACGTcount: A:0.41, C:0.35, G:0.00, T:0.24
Consensus pattern (34 bp):
CTCACCAAATACATCACCTAACACACCTAACATT
Found at i:776328 original size:25 final size:25
Alignment explanation
Indices: 776299--776400 Score: 71
Period size: 25 Copynumber: 4.4 Consensus size: 25
776289 TCACCTAACA
776299 CACCTAACATTCTCACCAAATACAT
1 CACCTAACATTCTCACCAAATACAT
*
776324 CACCTAACA----CACCTAACATTC-T
1 CACCTAACATTCTCACC-AA-ATACAT
* *
776346 CACC-AA-ATACATCACC-TA-ACA-
1 CACCTAACATTC-TCACCAAATACAT
776367 CACCTAACATTCTCACCAAATACAT
1 CACCTAACATTCTCACCAAATACAT
*
776392 TACCTAACA
1 CACCTAACA
776401 CACCTAACAT
Statistics
Matches: 58, Mismatches: 6, Indels: 26
0.64 0.07 0.29
Matches are distributed among these distances:
20 1 0.02
21 11 0.19
22 15 0.26
23 7 0.12
24 3 0.05
25 21 0.36
ACGTcount: A:0.41, C:0.37, G:0.00, T:0.22
Consensus pattern (25 bp):
CACCTAACATTCTCACCAAATACAT
Found at i:781369 original size:34 final size:34
Alignment explanation
Indices: 781321--781534 Score: 320
Period size: 34 Copynumber: 6.3 Consensus size: 34
781311 AAATATTTTA
* * * *
781321 CTCACCTAACACATTACCTAACACACCTAATATT
1 CTCACCAAATACATCACCTAACACACCTAACATT
* * * *
781355 TTCACCAAATACATTACCTAACACATCTAATATT
1 CTCACCAAATACATCACCTAACACACCTAACATT
*
781389 CTTACCAAATACATCACCTAACACACCTAACATT
1 CTCACCAAATACATCACCTAACACACCTAACATT
781423 CTCACCAAATACATCACCTAACACACCTAACATT
1 CTCACCAAATACATCACCTAACACACCTAACATT
781457 CTCACCAAATACATCACCTAACACACCTAACATT
1 CTCACCAAATACATCACCTAACACACCTAACATT
* *
781491 CTCACCAAATACATTACCTAACACACCTAACATG
1 CTCACCAAATACATCACCTAACACACCTAACATT
781525 CTTCACCAAA
1 C-TCACCAAA
781535 CACACTTAAC
Statistics
Matches: 167, Mismatches: 12, Indels: 1
0.93 0.07 0.01
Matches are distributed among these distances:
34 159 0.95
35 8 0.05
ACGTcount: A:0.41, C:0.35, G:0.00, T:0.24
Consensus pattern (34 bp):
CTCACCAAATACATCACCTAACACACCTAACATT
Found at i:781441 original size:25 final size:25
Alignment explanation
Indices: 781412--781513 Score: 71
Period size: 25 Copynumber: 4.4 Consensus size: 25
781402 TCACCTAACA
781412 CACCTAACATTCTCACCAAATACAT
1 CACCTAACATTCTCACCAAATACAT
*
781437 CACCTAACA----CACCTAACATTC-T
1 CACCTAACATTCTCACC-AA-ATACAT
* *
781459 CACC-AA-ATACATCACC-TA-ACA-
1 CACCTAACATTC-TCACCAAATACAT
781480 CACCTAACATTCTCACCAAATACAT
1 CACCTAACATTCTCACCAAATACAT
*
781505 TACCTAACA
1 CACCTAACA
781514 CACCTAACAT
Statistics
Matches: 58, Mismatches: 6, Indels: 26
0.64 0.07 0.29
Matches are distributed among these distances:
20 1 0.02
21 11 0.19
22 15 0.26
23 7 0.12
24 3 0.05
25 21 0.36
ACGTcount: A:0.41, C:0.37, G:0.00, T:0.22
Consensus pattern (25 bp):
CACCTAACATTCTCACCAAATACAT
Found at i:784791 original size:79 final size:78
Alignment explanation
Indices: 784607--784812 Score: 202
Period size: 79 Copynumber: 2.6 Consensus size: 78
784597 ATATTTCCCG
* * *
784607 ATGAGAAATTTAATATTTT-GGAGATAATAACGGGGTTGGAGTATCCCCTTGAAAATAACGGGGT
1 ATGAGAAA-TCAATATTTTGGGA-ATAA-AACGGGATTGGAGTATCCCCTCGAAAATAACGGGGT
* **
784671 TGGAGTATCCCCGGTT
63 CGGAGTATCCCCAATT
* * * * * * *
784687 GTGAAAAATCGATGA-TTAGGAAATAAAATCGGGATTGGAGTATCCCCTCGGACATAACGGGGTC
1 ATGAGAAATCAAT-ATTTTGGGAATAAAA-CGGGATTGGAGTATCCCCTCGAAAATAACGGGGTC
784751 GGAGTATCCCCAATT
64 GGAGTATCCCCAATT
*
784766 ATGAGAAATCAATATTTTGGGAATAAAGCTGAGG-TTGGAGTATCCCC
1 ATGAGAAATCAATATTTTGGGAATAAAAC-G-GGATTGGAGTATCCCC
784813 GATTAAAGGA
Statistics
Matches: 101, Mismatches: 19, Indels: 13
0.76 0.14 0.10
Matches are distributed among these distances:
78 4 0.04
79 86 0.85
80 11 0.11
ACGTcount: A:0.32, C:0.15, G:0.27, T:0.27
Consensus pattern (78 bp):
ATGAGAAATCAATATTTTGGGAATAAAACGGGATTGGAGTATCCCCTCGAAAATAACGGGGTCGG
AGTATCCCCAATT
Found at i:784896 original size:51 final size:51
Alignment explanation
Indices: 784744--785394 Score: 304
Period size: 51 Copynumber: 12.5 Consensus size: 51
784734 TCGGACATAA
* * * * * * * *
784744 CGGGGTCGGAGTATCCCCAATTAT-GAGAAATCAATATTTTGGGAATAAAGC
1 CGGGGTTGGAGTATCCCCGATTATGGA-AAATTAGTGTTTTAGAAATAAAAC
* * * *
784795 TGAGGTTGGAGTATCCCCGATTAAAGGAAAATTGGTGTTTT-GAAGATAAAAC
1 CGGGGTTGGAGTATCCCCGATT-ATGGAAAATTAGTGTTTTAGAA-ATAAAAC
* *
784847 CGGGGTTGGAGTATCCCCGACTGTGGAAAATTAGTGTTTTAGAAATAAAAC
1 CGGGGTTGGAGTATCCCCGATTATGGAAAATTAGTGTTTTAGAAATAAAAC
* * * * * *
784898 CAGGGTTGGAGTATCCCCGATTAT-GAGAAATCAATATTTTTGAAATAAAGC
1 CGGGGTTGGAGTATCCCCGATTATGGA-AAATTAGTGTTTTAGAAATAAAAC
* * * ** * **
784949 CGAGGTTGGAGTATCCCTTCGGAGGTAACGG--GGTTGGAGTATCTCCGATGAAAT--AA-
1 CGGGGTTGGAGTATCCC--C-GA--TTATGGAAAATT--AGTGT-T-TTA-GAAATAAAAC
* * * * * * * *
785005 CGAGGTTGGAGTATCCTCGATTGTGAAAAATTGGTGTTTTTGGAACTAAAAT
1 CGGGGTTGGAGTATCCCCGATTATGGAAAATTAGTG-TTTTAGAAATAAAAC
* * *
785057 CGGAGTTGGAGTATCCCCGATTAAAGGAAAATTGGTGTTTT-GAAGATAAAAC
1 CGGGGTTGGAGTATCCCCGATT-ATGGAAAATTAGTGTTTTAGAA-ATAAAAC
* *
785109 CGGGGTTGGAGTATCCCTGATTGTGGAAAATTAGTGTTTTAGAAATAAAAC
1 CGGGGTTGGAGTATCCCCGATTATGGAAAATTAGTGTTTTAGAAATAAAAC
* * * * * **
785160 CGGGGTTGGAGTATCCTCGATTAT-GAGAAATCAATATTTTGGAAATAAAGT
1 CGGGGTTGGAGTATCCCCGATTATGGA-AAATTAGTGTTTTAGAAATAAAAC
* * ** * * * ***** *
785211 CGGGGTTGGAGTATGCCCTCAGAGGTAACGG--GGTTGGAGTATCCCCGATGAAATAA
1 CGGGGTTGGAGTAT-CCC-C-GA--TTATGGAAAATTAGTGTTTTAGAAAT-AAA-AC
* * * * * * *
785267 CGAGGTTGGAGTATCCTCGATTGTGAAAAATTGGTGTTTTTGGAAATAAAAT
1 CGGGGTTGGAGTATCCCCGATTATGGAAAATTAGTG-TTTTAGAAATAAAAC
* * *
785319 C-GAGTTGGAGTATCCCCGATTAAAGGAAAATTGGTGTTTT-GAAAATAAAAC
1 CGGGGTTGGAGTATCCCCGATT-ATGGAAAATTAGTGTTTTAG-AAATAAAAC
*
785370 CGGGGTTGGAATATCCCCGATTATG
1 CGGGGTTGGAGTATCCCCGATTATG
785395 AACAATTGAG
Statistics
Matches: 444, Mismatches: 116, Indels: 80
0.69 0.18 0.12
Matches are distributed among these distances:
49 4 0.01
50 5 0.01
51 216 0.49
52 123 0.28
53 29 0.07
54 16 0.04
55 5 0.01
56 37 0.08
57 4 0.01
59 5 0.01
ACGTcount: A:0.31, C:0.13, G:0.28, T:0.29
Consensus pattern (51 bp):
CGGGGTTGGAGTATCCCCGATTATGGAAAATTAGTGTTTTAGAAATAAAAC
Found at i:785025 original size:28 final size:28
Alignment explanation
Indices: 784949--785025 Score: 79
Period size: 28 Copynumber: 2.8 Consensus size: 28
784939 GAAATAAAGC
**
784949 CGAGGTTGGAGTATCCCTTCG--GAGGTAA
1 CGAGGTTGGAGTAT-CC-TCGATGAAATAA
*
784977 CGGGGTTGGAGTAT-CTCCGATGAAATAA
1 CGAGGTTGGAGTATCCT-CGATGAAATAA
785005 CGAGGTTGGAGTATCCTCGAT
1 CGAGGTTGGAGTATCCTCGAT
785026 TGTGAAAAAT
Statistics
Matches: 41, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
25 1 0.02
26 3 0.07
28 35 0.85
29 2 0.05
ACGTcount: A:0.23, C:0.17, G:0.34, T:0.26
Consensus pattern (28 bp):
CGAGGTTGGAGTATCCTCGATGAAATAA
Found at i:785099 original size:262 final size:261
Alignment explanation
Indices: 784799--785389 Score: 1049
Period size: 262 Copynumber: 2.3 Consensus size: 261
784789 TAAAGCTGAG
784799 GTTGGAGTATCCCCGATTAAAGGAAAATTGGTGTTTTGAAGATAAAACCGGGGTTGGAGTATCCC
1 GTTGGAGTATCCCCGATTAAAGGAAAATTGGTGTTTTGAAGATAAAACCGGGGTTGGAGTATCCC
784864 CGACTGTGGAAAATTAGTGTTTTAGAAATAAAACCAGGGTTGGAGTATCCCCGATTATGAGAAAT
66 CGACTGTGGAAAATTAGTGTTTTAGAAATAAAACCAGGGTTGGAGTATCCCCGATTATGAGAAAT
* * *
784929 CAATATTTTTGAAATAAAGCCGAGGTTGGAGTAT-CCCTTCGGAGGTAACGGGGTTGGAGTATCT
131 CAATATTTTGGAAATAAAGCCGAGGTTGGAGTATGCCC-TCAGAGGTAACGGGGTTGGAGTATCC
*
784993 CCGATGAAATAACGAGGTTGGAGTATCCTCGATTGTGAAAAATTGGTGTTTTTGGAACTAAAATC
195 CCGATGAAATAACGAGGTTGGAGTATCCTCGATTGTGAAAAATTGGTGTTTTTGGAAATAAAATC
785058 GGA
260 -GA
785061 GTTGGAGTATCCCCGATTAAAGGAAAATTGGTGTTTTGAAGATAAAACCGGGGTTGGAGTATCCC
1 GTTGGAGTATCCCCGATTAAAGGAAAATTGGTGTTTTGAAGATAAAACCGGGGTTGGAGTATCCC
* * * *
785126 TGATTGTGGAAAATTAGTGTTTTAGAAATAAAACCGGGGTTGGAGTATCCTCGATTATGAGAAAT
66 CGACTGTGGAAAATTAGTGTTTTAGAAATAAAACCAGGGTTGGAGTATCCCCGATTATGAGAAAT
* *
785191 CAATATTTTGGAAATAAAGTCGGGGTTGGAGTATGCCCTCAGAGGTAACGGGGTTGGAGTATCCC
131 CAATATTTTGGAAATAAAGCCGAGGTTGGAGTATGCCCTCAGAGGTAACGGGGTTGGAGTATCCC
785256 CGATGAAATAACGAGGTTGGAGTATCCTCGATTGTGAAAAATTGGTGTTTTTGGAAATAAAATCG
196 CGATGAAATAACGAGGTTGGAGTATCCTCGATTGTGAAAAATTGGTGTTTTTGGAAATAAAATCG
785321 A
261 A
* *
785322 GTTGGAGTATCCCCGATTAAAGGAAAATTGGTGTTTTGAAAATAAAACCGGGGTTGGAATATCCC
1 GTTGGAGTATCCCCGATTAAAGGAAAATTGGTGTTTTGAAGATAAAACCGGGGTTGGAGTATCCC
785387 CGA
66 CGA
785390 TTATGAACAA
Statistics
Matches: 315, Mismatches: 13, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
261 67 0.21
262 245 0.78
263 3 0.01
ACGTcount: A:0.31, C:0.13, G:0.28, T:0.29
Consensus pattern (261 bp):
GTTGGAGTATCCCCGATTAAAGGAAAATTGGTGTTTTGAAGATAAAACCGGGGTTGGAGTATCCC
CGACTGTGGAAAATTAGTGTTTTAGAAATAAAACCAGGGTTGGAGTATCCCCGATTATGAGAAAT
CAATATTTTGGAAATAAAGCCGAGGTTGGAGTATGCCCTCAGAGGTAACGGGGTTGGAGTATCCC
CGATGAAATAACGAGGTTGGAGTATCCTCGATTGTGAAAAATTGGTGTTTTTGGAAATAAAATCG
A
Found at i:785267 original size:28 final size:28
Alignment explanation
Indices: 785211--785287 Score: 86
Period size: 28 Copynumber: 2.8 Consensus size: 28
785201 GAAATAAAGT
**
785211 CGGGGTTGGAGTATGCCCTC-A-GAGGTAA
1 CGGGGTTGGAGTAT-CCC-CGATGAAATAA
785239 CGGGGTTGGAGTATCCCCGATGAAATAA
1 CGGGGTTGGAGTATCCCCGATGAAATAA
* *
785267 CGAGGTTGGAGTATCCTCGAT
1 CGGGGTTGGAGTATCCCCGAT
785288 TGTGAAAAAT
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
26 1 0.02
27 4 0.09
28 38 0.88
ACGTcount: A:0.23, C:0.18, G:0.35, T:0.23
Consensus pattern (28 bp):
CGGGGTTGGAGTATCCCCGATGAAATAA
Found at i:787754 original size:13 final size:13
Alignment explanation
Indices: 787736--787761 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
787726 ACATAGATCG
787736 ATGTATCGATACA
1 ATGTATCGATACA
787749 ATGTATCGATACA
1 ATGTATCGATACA
787762 TTTCCTTAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:787772 original size:21 final size:21
Alignment explanation
Indices: 787748--787789 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
787738 GTATCGATAC
*
787748 AATGTATCGATACATTTCCTT
1 AATGTATCAATACATTTCCTT
787769 AATGTATCAATACATTTCCTT
1 AATGTATCAATACATTTCCTT
787790 GGCAGTAGCT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.31, C:0.19, G:0.07, T:0.43
Consensus pattern (21 bp):
AATGTATCAATACATTTCCTT
Found at i:787849 original size:32 final size:32
Alignment explanation
Indices: 787806--787878 Score: 119
Period size: 32 Copynumber: 2.3 Consensus size: 32
787796 AGCTTCGTAG
787806 CGATACATTGTATCAATACAAAACTTATGTAT
1 CGATACATTGTATCAATACAAAACTTATGTAT
* * *
787838 CGATACGTTGTATCGATACAACACTTATGTAT
1 CGATACATTGTATCAATACAAAACTTATGTAT
787870 CGATACATT
1 CGATACATT
787879 TACGGTTTGT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 37 1.00
ACGTcount: A:0.36, C:0.18, G:0.12, T:0.34
Consensus pattern (32 bp):
CGATACATTGTATCAATACAAAACTTATGTAT
Found at i:789325 original size:52 final size:52
Alignment explanation
Indices: 789240--789372 Score: 160
Period size: 52 Copynumber: 2.6 Consensus size: 52
789230 AATTACTTGT
* * * * * ** *
789240 ATGTATGGATACATTGAATAATGTATCGATACAT-TTAGGTTAAAAACTTAGA
1 ATGTATCGATACAATGAAAAATGTATCGATACATAAT-GGTCAAAAACCCAAA
*
789292 ATTTATCGATACAATGAAAAATGTATCGATACATAATGGTCAAAAACCCAAA
1 ATGTATCGATACAATGAAAAATGTATCGATACATAATGGTCAAAAACCCAAA
*
789344 ATGTATCGCTACAATGAAAAATGTATCGA
1 ATGTATCGATACAATGAAAAATGTATCGA
789373 ATAAGTGTTT
Statistics
Matches: 69, Mismatches: 11, Indels: 2
0.84 0.13 0.02
Matches are distributed among these distances:
52 68 0.99
53 1 0.01
ACGTcount: A:0.44, C:0.12, G:0.15, T:0.29
Consensus pattern (52 bp):
ATGTATCGATACAATGAAAAATGTATCGATACATAATGGTCAAAAACCCAAA
Found at i:789619 original size:16 final size:16
Alignment explanation
Indices: 789598--789630 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
789588 CGATACATGC
*
789598 CTGAAATGTATTGATA
1 CTGAAATGTATTAATA
789614 CTGAAATGTATTAATA
1 CTGAAATGTATTAATA
789630 C
1 C
789631 ATGTAAGCTC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.39, C:0.09, G:0.15, T:0.36
Consensus pattern (16 bp):
CTGAAATGTATTAATA
Found at i:790383 original size:13 final size:13
Alignment explanation
Indices: 790365--790390 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
790355 CGTTGGGTTT
790365 AATGTATCGATAC
1 AATGTATCGATAC
790378 AATGTATCGATAC
1 AATGTATCGATAC
790391 TAAGTGAGTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
AATGTATCGATAC
Found at i:790466 original size:19 final size:17
Alignment explanation
Indices: 790415--790469 Score: 56
Period size: 20 Copynumber: 2.9 Consensus size: 17
790405 TACTGCTAGT
*
790415 TTCATGTATCGATACAA
1 TTCATGTATCGATACTA
790432 TTCAATGTGCATCGATACTA
1 TTC-ATGT--ATCGATACTA
790452 TGATCATGTATCGATACT
1 T--TCATGTATCGATACT
790470 TTCTAGGGTT
Statistics
Matches: 32, Mismatches: 1, Indels: 8
0.78 0.02 0.20
Matches are distributed among these distances:
17 3 0.09
18 4 0.12
19 9 0.28
20 10 0.31
21 4 0.12
22 2 0.06
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (17 bp):
TTCATGTATCGATACTA
Found at i:790578 original size:22 final size:20
Alignment explanation
Indices: 790548--790588 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 20
790538 ACTTTTGATT
*
790548 ATTTTTACTTGAAAACATATG
1 ATTTTTACTT-AAAAAATATG
790569 ATTTATTACTTAAAAAATAT
1 ATTT-TTACTTAAAAAATAT
790589 TTATACTTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 12 0.67
22 6 0.33
ACGTcount: A:0.44, C:0.07, G:0.05, T:0.44
Consensus pattern (20 bp):
ATTTTTACTTAAAAAATATG
Found at i:790583 original size:21 final size:18
Alignment explanation
Indices: 790547--790598 Score: 54
Period size: 21 Copynumber: 2.8 Consensus size: 18
790537 TACTTTTGAT
790547 TATTT-TTACTTGAAAACATA
1 TATTTATTACTT-AAAA-A-A
790567 TGATTTATTACTTAAAAAA
1 T-ATTTATTACTTAAAAAA
790586 TATTTA-TACTTAA
1 TATTTATTACTTAA
790599 CTCTAAAACA
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
17 7 0.23
18 5 0.17
19 2 0.07
20 2 0.07
21 8 0.27
22 6 0.20
ACGTcount: A:0.42, C:0.08, G:0.04, T:0.46
Consensus pattern (18 bp):
TATTTATTACTTAAAAAA
Found at i:793140 original size:13 final size:13
Alignment explanation
Indices: 793122--793146 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
793112 AATAGTGCCC
793122 ATGTATCGATACA
1 ATGTATCGATACA
793135 ATGTATCGATAC
1 ATGTATCGATAC
793147 TAAGAACACA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:804338 original size:20 final size:20
Alignment explanation
Indices: 804313--804363 Score: 68
Period size: 20 Copynumber: 2.5 Consensus size: 20
804303 AATTAAAATG
*
804313 TATCGATACATG-GGACATTA
1 TATCGATACATGAAGA-ATTA
*
804333 TATCGATACATGAAGAATTG
1 TATCGATACATGAAGAATTA
804353 TATCGATACAT
1 TATCGATACAT
804364 TATGCCCAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
20 26 0.93
21 2 0.07
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (20 bp):
TATCGATACATGAAGAATTA
Found at i:806438 original size:21 final size:22
Alignment explanation
Indices: 806414--806469 Score: 64
Period size: 21 Copynumber: 2.6 Consensus size: 22
806404 ACTAGAGGAG
*
806414 AAAATGAATGAGTTGGAAAA-A
1 AAAATGAATGAGTTGCAAAATA
*
806435 AAAA-GAAATGAGTTGCAAAATG
1 AAAATG-AATGAGTTGCAAAATA
806457 AAAATG-ATGAGTT
1 AAAATGAATGAGTT
806470 AACTAATCAA
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
20 1 0.03
21 24 0.80
22 4 0.13
23 1 0.03
ACGTcount: A:0.54, C:0.02, G:0.23, T:0.21
Consensus pattern (22 bp):
AAAATGAATGAGTTGCAAAATA
Found at i:807956 original size:18 final size:18
Alignment explanation
Indices: 807929--807964 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
807919 TTCATTAATC
807929 TTTCAACAATTGGTATCA
1 TTTCAACAATTGGTATCA
*
807947 TTTCATCAATTGGTATCA
1 TTTCAACAATTGGTATCA
807965 ATCATCTTCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.31, C:0.17, G:0.11, T:0.42
Consensus pattern (18 bp):
TTTCAACAATTGGTATCA
Found at i:809495 original size:19 final size:20
Alignment explanation
Indices: 809471--809524 Score: 74
Period size: 19 Copynumber: 2.8 Consensus size: 20
809461 TATCAATATG
*
809471 TTGTATCAATACATGCTC-C
1 TTGTATCAATACATGCTCAA
* *
809490 TTGTATCGATACATACTCAA
1 TTGTATCAATACATGCTCAA
809510 TTGTATCAATACATG
1 TTGTATCAATACATG
809525 AAATTGGCAG
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
19 16 0.55
20 13 0.45
ACGTcount: A:0.31, C:0.20, G:0.11, T:0.37
Consensus pattern (20 bp):
TTGTATCAATACATGCTCAA
Found at i:809595 original size:33 final size:33
Alignment explanation
Indices: 809553--809619 Score: 107
Period size: 33 Copynumber: 2.0 Consensus size: 33
809543 CTAAGTGAAA
** *
809553 TGTATCAATACATGGGGCATTGTATCGATACAT
1 TGTATCAATACATGAAGAATTGTATCGATACAT
809586 TGTATCAATACATGAAGAATTGTATCGATACAT
1 TGTATCAATACATGAAGAATTGTATCGATACAT
809619 T
1 T
809620 ATGTCCAACG
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.34, C:0.13, G:0.18, T:0.34
Consensus pattern (33 bp):
TGTATCAATACATGAAGAATTGTATCGATACAT
Found at i:812507 original size:13 final size:13
Alignment explanation
Indices: 812489--812514 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
812479 CAATTTTTTG
812489 TGTATCGATACAT
1 TGTATCGATACAT
812502 TGTATCGATACAT
1 TGTATCGATACAT
812515 ACATTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:814274 original size:21 final size:21
Alignment explanation
Indices: 814248--814289 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
814238 AATCAACTAT
* *
814248 TCAAGATGATGATGAAGATGA
1 TCAAGAGGATGATGAAAATGA
*
814269 TCAAGAGGTTGATGAAAATGA
1 TCAAGAGGATGATGAAAATGA
814290 AGAAATGGAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.43, C:0.05, G:0.29, T:0.24
Consensus pattern (21 bp):
TCAAGAGGATGATGAAAATGA
Found at i:818355 original size:20 final size:20
Alignment explanation
Indices: 818310--818361 Score: 79
Period size: 19 Copynumber: 2.6 Consensus size: 20
818300 GTAGCCAAAC
**
818310 TTGTATCGATACACAAAGTA
1 TTGTATCGATACACAAAAAA
818330 -TGTATCGATACACAAAAAA
1 TTGTATCGATACACAAAAAA
818349 TTGTATCGATACA
1 TTGTATCGATACA
818362 TTGGCTTGTA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
19 17 0.59
20 12 0.41
ACGTcount: A:0.42, C:0.15, G:0.13, T:0.29
Consensus pattern (20 bp):
TTGTATCGATACACAAAAAA
Found at i:821521 original size:61 final size:61
Alignment explanation
Indices: 821452--821619 Score: 182
Period size: 61 Copynumber: 2.8 Consensus size: 61
821442 AATGCTAATG
* * *
821452 TGCT-GATTCAAGGTCAACAACATTGGACTTAAAGATGCAAAGAATGATAAAGGTGCCAATA
1 TGCTAGATTCAAGGCCAACAATATTGG-CTTAAAGATGCAAAGAATGACAAAGGTGCCAATA
* * * * *
821513 TG-TAGATTCACGGCCAGCAATATCAGGCTTGAAGATG-AGAAGAATGACAAATGTGCCAATA
1 TGCTAGATTCAAGGCCAACAATAT-TGGCTTAAAGATGCA-AAGAATGACAAAGGTGCCAATA
* *
821574 TGCTA-ATTCAAGGCCAACGATATTGGGCTTAAAGATGCGAAGAATG
1 TGCTAGATTCAAGGCCAACAATATT-GGCTTAAAGATGCAAAGAATG
821620 CTAATGTGTT
Statistics
Matches: 87, Mismatches: 14, Indels: 12
0.77 0.12 0.11
Matches are distributed among these distances:
60 2 0.02
61 81 0.93
62 4 0.05
ACGTcount: A:0.38, C:0.15, G:0.24, T:0.23
Consensus pattern (61 bp):
TGCTAGATTCAAGGCCAACAATATTGGCTTAAAGATGCAAAGAATGACAAAGGTGCCAATA
Found at i:821790 original size:52 final size:52
Alignment explanation
Indices: 821724--821871 Score: 167
Period size: 52 Copynumber: 2.9 Consensus size: 52
821714 TTAAAGATGT
* * * * *
821724 CAATATACTAATTCAAGGCCAGTGATATCGGACTTAA-ATATGACAAAA-GTGC
1 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAGA-AAGA-AAAATGTGC
* *
821776 CAATATGCTGATTCAAGGCTAGCGATATTAGACTTAAGAAAGAAAAATGTGC
1 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAGAAAGAAAAATGTGC
* * *
821828 TAATGTGCTGATTCAAGGTCAGCGATATTGGACTT-AGAAAGAAA
1 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAGAAAGAAA
821872 TGGTTTGACA
Statistics
Matches: 82, Mismatches: 12, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
51 13 0.16
52 68 0.83
53 1 0.01
ACGTcount: A:0.39, C:0.14, G:0.21, T:0.26
Consensus pattern (52 bp):
CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAGAAAGAAAAATGTGC
Found at i:821956 original size:58 final size:59
Alignment explanation
Indices: 821836--821963 Score: 136
Period size: 58 Copynumber: 2.2 Consensus size: 59
821826 GCTAATGTGC
* * *
821836 TGATTCAAGG-TCAGCGATATTGGACTTAGAAAGAAATGGTTTGACAAGTCCCAATATGT
1 TGATTCAAGGCT-AACGATATTGGACTTAGAAAGAAATGGTTTGACAAATCCCAATATAT
* * * * * *
821895 TGATTTAAGGCTAACGATATTGGGCTTGAGAATG-AA-GGTTTGACAAATGCCATTGTAT
1 TGATTCAAGGCTAACGATATTGGACTT-AGAAAGAAATGGTTTGACAAATCCCAATATAT
821953 TGATTCAAGGC
1 TGATTCAAGGC
821964 CAACAACTTT
Statistics
Matches: 57, Mismatches: 10, Indels: 5
0.79 0.14 0.07
Matches are distributed among these distances:
58 27 0.47
59 24 0.42
60 6 0.11
ACGTcount: A:0.32, C:0.12, G:0.25, T:0.30
Consensus pattern (59 bp):
TGATTCAAGGCTAACGATATTGGACTTAGAAAGAAATGGTTTGACAAATCCCAATATAT
Found at i:822042 original size:32 final size:33
Alignment explanation
Indices: 821990--822074 Score: 86
Period size: 32 Copynumber: 2.6 Consensus size: 33
821980 GGAAAGGGAT
* *
821990 GCCACCAACTTGTAAT-GGCTTTTCAGAAG-GTC
1 GCCACCAACTTGT-GTGGGCTTTTAAGAAGAGTC
*
822022 GCCACCAACTTGTGTGGGC-TTTAAGAAGAGTT
1 GCCACCAACTTGTGTGGGCTTTTAAGAAGAGTC
* * *
822054 GTCATCGACTTGTGTGGGCTT
1 GCCACCAACTTGTGTGGGCTT
822075 AAGAGGACGA
Statistics
Matches: 44, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
31 9 0.20
32 34 0.77
33 1 0.02
ACGTcount: A:0.21, C:0.21, G:0.27, T:0.31
Consensus pattern (33 bp):
GCCACCAACTTGTGTGGGCTTTTAAGAAGAGTC
Found at i:822377 original size:52 final size:52
Alignment explanation
Indices: 822316--822417 Score: 125
Period size: 52 Copynumber: 2.0 Consensus size: 52
822306 CGAATTGAAT
** *
822316 TTAAAGATGATGAAGGTACCAACGTACTGAT-TCAAGGCTAGCAGCATTGGTC
1 TTAAAGATGACAAAGGTACCAACGTACTGATCT-AAGGCTAGCAACATTGGTC
* * * *
822368 TTAAAGATGACAAAGGTGCTAACGTGCTGATCTAAGGTTAGCAACATTGG
1 TTAAAGATGACAAAGGTACCAACGTACTGATCTAAGGCTAGCAACATTGG
822418 AACGAAAGAT
Statistics
Matches: 42, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
52 41 0.98
53 1 0.02
ACGTcount: A:0.33, C:0.16, G:0.25, T:0.25
Consensus pattern (52 bp):
TTAAAGATGACAAAGGTACCAACGTACTGATCTAAGGCTAGCAACATTGGTC
Found at i:830597 original size:52 final size:52
Alignment explanation
Indices: 830519--830669 Score: 239
Period size: 52 Copynumber: 2.9 Consensus size: 52
830509 CGAAATATGA
* *
830519 AAATTTGCCTACATGTATCGATACATTACATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
* *
830571 AAATTTGCCTGTATGTATCGATACATTTCATAGTGTATCGATACATCTGGGT
1 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
* *
830623 AAATTTGCCTGCATGTATCGATACATTTGAGTAATGTATCGATACAT
1 AAATTTGCCTGCATGTATCGATACATTTCA-TAGTGTATCGATACAT
830670 TGTATTGATA
Statistics
Matches: 91, Mismatches: 7, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
52 76 0.84
53 15 0.16
ACGTcount: A:0.30, C:0.17, G:0.18, T:0.36
Consensus pattern (52 bp):
AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
Found at i:830679 original size:13 final size:13
Alignment explanation
Indices: 830657--830745 Score: 61
Period size: 13 Copynumber: 5.9 Consensus size: 13
830647 ATTTGAGTAA
830657 TGTATCGATACAT
1 TGTATCGATACAT
*
830670 TGTATTGATACAAAACTT
1 TGTATCGATAC---A--T
830688 ATGTATCGATACAT
1 -TGTATCGATACAT
830702 TGTATCGATACAACACTT
1 TGTATCGAT---ACA--T
830720 ATGTATCGATACAT
1 -TGTATCGATACAT
830734 TGTATCGATACA
1 TGTATCGATACA
830746 AATCATTAAA
Statistics
Matches: 62, Mismatches: 2, Indels: 24
0.70 0.02 0.27
Matches are distributed among these distances:
13 31 0.50
14 2 0.03
16 8 0.13
18 2 0.03
19 19 0.31
ACGTcount: A:0.35, C:0.16, G:0.13, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:830697 original size:32 final size:32
Alignment explanation
Indices: 830656--830747 Score: 166
Period size: 32 Copynumber: 2.9 Consensus size: 32
830646 CATTTGAGTA
*
830656 ATGTATCGATACATTGTATTGATACAAAACTT
1 ATGTATCGATACATTGTATCGATACAAAACTT
*
830688 ATGTATCGATACATTGTATCGATACAACACTT
1 ATGTATCGATACATTGTATCGATACAAAACTT
830720 ATGTATCGATACATTGTATCGATACAAA
1 ATGTATCGATACATTGTATCGATACAAA
830748 TCATTAAAAT
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
32 57 1.00
ACGTcount: A:0.37, C:0.15, G:0.13, T:0.35
Consensus pattern (32 bp):
ATGTATCGATACATTGTATCGATACAAAACTT
Found at i:830698 original size:19 final size:18
Alignment explanation
Indices: 830670--830732 Score: 64
Period size: 19 Copynumber: 3.7 Consensus size: 18
830660 ATCGATACAT
*
830670 TGTATTGATACAAAACTTA
1 TGTATCGATAC-AAACTTA
830689 TGTATCGATAC--A--T-
1 TGTATCGATACAAACTTA
830702 TGTATCGATACAACACTTA
1 TGTATCGATACAA-ACTTA
830721 TGTATCGATACA
1 TGTATCGATACA
830733 TTGTATCGAT
Statistics
Matches: 37, Mismatches: 1, Indels: 12
0.74 0.02 0.24
Matches are distributed among these distances:
13 11 0.30
14 1 0.03
16 2 0.05
18 1 0.03
19 22 0.59
ACGTcount: A:0.37, C:0.16, G:0.13, T:0.35
Consensus pattern (18 bp):
TGTATCGATACAAACTTA
Found at i:836404 original size:24 final size:24
Alignment explanation
Indices: 836372--836417 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
836362 CCTTCGTCGC
836372 TTCGATTCGTCCCTCCCCTTTCCT
1 TTCGATTCGTCCCTCCCCTTTCCT
*
836396 TTCGTTTCGTCCCTCCCCTTTC
1 TTCGATTCGTCCCTCCCCTTTC
836418 GCAAAGTGGA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.02, C:0.46, G:0.09, T:0.43
Consensus pattern (24 bp):
TTCGATTCGTCCCTCCCCTTTCCT
Found at i:847803 original size:13 final size:13
Alignment explanation
Indices: 847785--847812 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
847775 CATCATTCAA
847785 TGTATCGATACAT
1 TGTATCGATACAT
847798 TGTATCGATACAT
1 TGTATCGATACAT
847811 TG
1 TG
847813 ATCTTTGTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.14, G:0.18, T:0.39
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:857705 original size:43 final size:43
Alignment explanation
Indices: 857657--857982 Score: 300
Period size: 43 Copynumber: 7.2 Consensus size: 43
857647 TAAAGAGGAC
*
857657 AAAGGTGCTAATATGCTGATTCAAGGCCAGCGATATTGGACTT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* * *
857700 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTACTAA
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGG-ACT-T
* *
857745 AGATGAGGTGCGAATATGCTGATTCAAGGCCAGCAATATTGGACTT
1 A-A--AGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* * * *
857791 AAAGGTACCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
*
857834 AAAGATGACAAAGGCGCTAATATGCTGATTCAAGGCCAGCGATATTGGACTT
1 AAAG--G-----TGC-C-AATATGCTGATTCAAGGCCAGCGATATTGGACTT
* * * *
857886 --A--TGCCAATGTGCTGATCCAAGGCCAGCGACATTGGTCTT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
*
857925 AAAGACAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTT
1 ----A-AAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
*
857973 AAAGATGCCA
1 AAAGGTGCCA
857983 CGAAGTTGTG
Statistics
Matches: 230, Mismatches: 30, Indels: 46
0.75 0.10 0.15
Matches are distributed among these distances:
39 30 0.13
40 1 0.00
41 2 0.01
43 83 0.36
44 4 0.02
45 3 0.01
46 3 0.01
47 3 0.01
48 67 0.29
50 2 0.01
51 1 0.00
52 31 0.13
ACGTcount: A:0.31, C:0.19, G:0.26, T:0.24
Consensus pattern (43 bp):
AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
Found at i:857794 original size:91 final size:92
Alignment explanation
Indices: 857508--857982 Score: 590
Period size: 91 Copynumber: 5.1 Consensus size: 92
857498 TTTAAAGATG
* * *
857508 AAGGTGCCAATGCGCTGACTCAAGGCCAGCGACATTGGTAC-TAAAGATAAAGGTGCCAATATGC
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTACTTAAAGAT-GAGGTGCCAATATGC
* *
857572 TGATTCAAGGCCAGTGATATTGGTCTTAAAGA
65 TGATTCAAGGCCAGCGATATTGGACTT----A
* * *
857604 TGAAGGTGCCAATGTGCTGATTCAAGGCCAGCAACATTGG-ACTTAAAGAGGACAAAGGTGCTAA
1 --AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTACTTAAAGATG----AGGTGCCAA
857668 TATGCTGATTCAAGGCCAGCGATATTGGACTTA
60 TATGCTGATTCAAGGCCAGCGATATTGGACTTA
*
857701 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTAC-TAAAGATGAGGTGCGAATATGCT
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTACTTAAAGATGAGGTGCCAATATGCT
*
857765 GATTCAAGGCCAGCAATATTGGACTTA
66 GATTCAAGGCCAGCGATATTGGACTTA
* * *
857792 AAGGTACCAATGTGCTGATTCAAGGCCAGCGACATTGGT-CTTAAAGATGACAAAGGCGCTAATA
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTACTTAAAGATG----AGGTGCCAATA
857856 TGCTGATTCAAGGCCAGCGATATTGGACTT-
62 TGCTGATTCAAGGCCAGCGATATTGGACTTA
* **
857886 -A--TGCCAATGTGCTGATCCAAGGCCAGCGACATTGGT-CTTAAAGACAAGGTGCCAATATGCT
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTACTTAAAGATGAGGTGCCAATATGCT
*
857947 GATTCAAGGCCAGCGATATTGGGCTTA
66 GATTCAAGGCCAGCGATATTGGACTTA
*
857974 AAGATGCCA
1 AAGGTGCCA
857983 CGAAGTTGTG
Statistics
Matches: 339, Mismatches: 23, Indels: 37
0.85 0.06 0.09
Matches are distributed among these distances:
87 38 0.11
89 1 0.00
90 1 0.00
91 132 0.39
93 1 0.00
95 82 0.24
96 2 0.01
97 3 0.01
98 41 0.12
101 38 0.11
ACGTcount: A:0.31, C:0.19, G:0.26, T:0.24
Consensus pattern (92 bp):
AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTACTTAAAGATGAGGTGCCAATATGCT
GATTCAAGGCCAGCGATATTGGACTTA
Found at i:857846 original size:186 final size:185
Alignment explanation
Indices: 857508--857976 Score: 694
Period size: 186 Copynumber: 2.5 Consensus size: 185
857498 TTTAAAGATG
* *
857508 AAGGTGCCAATGCGCTGACTCAAGGCCAGCGACATTGGTACTAAAGATAAAGGTGCCAATATGCT
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTACTAAAGAT-AAGGTGCCAATATGCT
* * *
857573 GATTCAAGGCCAGTGATATTGGTCTTAAAGATGAAGGTGCCAATGTGCTGATTCAAGGCCAGCAA
65 GATTCAAGGCCAGCGATATTGGACTT----A--AAGGTACCAATGTGCTGATTCAAGGCCAGCAA
*
857638 CATTGGACTTAAAGAGGACAAAGGTGCTAATATGCTGATTCAAGGCCAGCGATATTGGACTT
124 CATTGGACTTAAAGAGGACAAAGGCGCTAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* *
857700 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTACTAAAGATGAGGTGCGAATATGCT
1 -AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTACTAAAGATAAGGTGCCAATATGCT
* *
857765 GATTCAAGGCCAGCAATATTGGACTTAAAGGTACCAATGTGCTGATTCAAGGCCAGCGACATTGG
65 GATTCAAGGCCAGCGATATTGGACTTAAAGGTACCAATGTGCTGATTCAAGGCCAGCAACATTGG
* *
857830 TCTTAAAGATGACAAAGGCGCTAATATGCTGATTCAAGGCCAGCGATATTGGACTT
130 ACTTAAAGAGGACAAAGGCGCTAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* *
857886 -A--TGCCAATGTGCTGATCCAAGGCCAGCGACATTGGT-CTTAAAGACAAGGTGCCAATATGCT
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTAC-TAAAGATAAGGTGCCAATATGCT
*
857947 GATTCAAGGCCAGCGATATTGGGCTTAAAG
65 GATTCAAGGCCAGCGATATTGGACTTAAAG
857977 ATGCCACGAA
Statistics
Matches: 257, Mismatches: 18, Indels: 13
0.89 0.06 0.05
Matches are distributed among these distances:
181 1 0.00
182 82 0.32
184 1 0.00
186 89 0.35
188 1 0.00
192 37 0.14
193 46 0.18
ACGTcount: A:0.31, C:0.19, G:0.26, T:0.24
Consensus pattern (185 bp):
AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTACTAAAGATAAGGTGCCAATATGCTG
ATTCAAGGCCAGCGATATTGGACTTAAAGGTACCAATGTGCTGATTCAAGGCCAGCAACATTGGA
CTTAAAGAGGACAAAGGCGCTAATATGCTGATTCAAGGCCAGCGATATTGGACTT
Found at i:858042 original size:27 final size:27
Alignment explanation
Indices: 858004--858173 Score: 155
Period size: 27 Copynumber: 6.0 Consensus size: 27
857994 CCTGTGAGAA
* *
858004 AAAAGGGATGCCACAGAGGTGTGGGCTT
1 AAAAGGG-TGCCACAGAGTTGTGGACTT
858032 AAAAGGGTGCCACAGAGTTGTGGACTT
1 AAAAGGGTGCCACAGAGTTGTGGACTT
* *
858059 AAAAGGGTACCACAAAGTTGTGGACTT
1 AAAAGGGTGCCACAGAGTTGTGGACTT
* *
858086 AAAAGGAACAAGGTGCCACGGAGTTCTGGACTTT
1 AAAA-G-----GGTGCCACAGAGTTGTGGAC-TT
*
858120 AAAAGGGTGCCACCA-AGTTGTGGGCTTT
1 AAAAGGGTGCCA-CAGAGTTGTGGAC-TT
* *
858148 AAAAGAGTGCC-TAGAGTTGTGGACTT
1 AAAAGGGTGCCACAGAGTTGTGGACTT
858174 TGAAGAAAAT
Statistics
Matches: 119, Mismatches: 14, Indels: 20
0.78 0.09 0.13
Matches are distributed among these distances:
26 3 0.03
27 56 0.47
28 36 0.30
29 1 0.01
33 17 0.14
34 6 0.05
ACGTcount: A:0.31, C:0.15, G:0.32, T:0.22
Consensus pattern (27 bp):
AAAAGGGTGCCACAGAGTTGTGGACTT
Found at i:858174 original size:27 final size:27
Alignment explanation
Indices: 858012--858236 Score: 107
Period size: 27 Copynumber: 7.7 Consensus size: 27
858002 AAAAAAGGGA
* * *
858012 TGCCACAGAGGTGTGGGC-TTAAAAGGG
1 TGCCAC-GAGTTGTGGACTTTAAAAGAG
*
858039 TGCCACAGAGTTGTGGAC-TTAAAAGGG
1 TGCCAC-GAGTTGTGGACTTTAAAAGAG
* *
858066 TACCACAAAGTTGTGGAC-TTAAAAGGAACAAGG
1 TGCCAC-GAGTTGTGGACTTTAAAA-G----A-G
* *
858099 TGCCACGGAGTTCTGGACTTTAAAAGGG
1 TGCCAC-GAGTTGTGGACTTTAAAAGAG
* *
858127 TGCCACCAAGTTGTGGGCTTTAAAAGAG
1 TGCCA-CGAGTTGTGGACTTTAAAAGAG
* *
858155 TGCCTA-GAGTTGTGGACTTTGAAGAAAATA
1 TGCC-ACGAGTTGTGGACTTT-AA-AAGA-G
* *
858185 TGCCATTGAGTCGTGGACTTTAAAAAGAG
1 TGCCA-CGAGTTGTGGACTTT-AAAAGAG
*
858214 ATTGCCACTGAGTTGTGTACTTT
1 --TGCCAC-GAGTTGTGGACTTT
858237 GGAGAAAAAA
Statistics
Matches: 156, Mismatches: 25, Indels: 30
0.74 0.12 0.14
Matches are distributed among these distances:
27 59 0.38
28 30 0.19
29 6 0.04
30 7 0.04
31 32 0.21
33 16 0.10
34 6 0.04
ACGTcount: A:0.30, C:0.15, G:0.29, T:0.26
Consensus pattern (27 bp):
TGCCACGAGTTGTGGACTTTAAAAGAG
Found at i:858204 original size:31 final size:30
Alignment explanation
Indices: 858161--858422 Score: 237
Period size: 31 Copynumber: 8.5 Consensus size: 30
858151 AGAGTGCCTA
* *
858161 GAGTTGTGGACTTTGAAGAAAATATGCCATT
1 GAGTCGTGGACTTTG-AGAAAATATGCCACT
* *
858192 GAGTCGTGGACTTT-AAAAAGAGATTGCCACT
1 GAGTCGTGGACTTTGAGAAA-ATA-TGCCACT
* * *
858223 GAGTTGTGTACTTTGGAGAAAAAAATGCCACT
1 GAGTCGTGGACTTT-GAG-AAAATATGCCACT
*
858255 GAGTCAGTGGACTTTGGGACAAA-ATGCCACT
1 GAGTC-GTGGACTTTGAGA-AAATATGCCACT
*
858286 GAGTCGTGGGCTTTGAGAAAATATTGCCACT
1 GAGTCGTGGACTTTGAGAAAATA-TGCCACT
* *
858317 GAGTCGTGGACTTTAAGAAAAAAATGCCACT
1 GAGTCGTGGACTTTGAG-AAAATATGCCACT
* *
858348 GAGTCGTGGACTTTCG-GACAAA-ATGCTAGT
1 GAGTCGTGGACTTT-GAGA-AAATATGCCACT
*
858378 GAGTCGTGGGCTTTGAGAAGAGAT-TGCCACT
1 GAGTCGTGGACTTTGAGAA-A-ATATGCCACT
*
858409 GAGTCATGGACTTT
1 GAGTCGTGGACTTT
858423 AAAAAGGTAT
Statistics
Matches: 191, Mismatches: 24, Indels: 32
0.77 0.10 0.13
Matches are distributed among these distances:
29 9 0.05
30 37 0.19
31 110 0.58
32 21 0.11
33 11 0.06
34 3 0.02
ACGTcount: A:0.30, C:0.15, G:0.28, T:0.27
Consensus pattern (30 bp):
GAGTCGTGGACTTTGAGAAAATATGCCACT
Found at i:858384 original size:92 final size:93
Alignment explanation
Indices: 858184--858424 Score: 342
Period size: 92 Copynumber: 2.6 Consensus size: 93
858174 TGAAGAAAAT
* * * * * *
858184 ATGCCATTGAGTCGTGGACTTT-AAAAAGAGATTGCCACTGAGTTGTGTACTTTGGAGAAAAAAA
1 ATGCCACTGAGTCGTGGGCTTTGAGAAA-AGATTGCCACTGAGTCGTGGACTTT-AAGAAAAAAA
*
858248 TGCCACTGAGTCAGTGGACTTTGGGACAAA
64 TGCCACTGAGTCAGTGGACTTTCGGACAAA
*
858278 ATGCCACTGAGTCGTGGGCTTTGAGAAAATATTGCCACTGAGTCGTGGACTTTAAGAAAAAAATG
1 ATGCCACTGAGTCGTGGGCTTTGAGAAAAGATTGCCACTGAGTCGTGGACTTTAAGAAAAAAATG
858343 CCACTGAGTC-GTGGACTTTCGGACAAA
66 CCACTGAGTCAGTGGACTTTCGGACAAA
* * * *
858370 ATGCTAGTGAGTCGTGGGCTTTGAGAAGAGATTGCCACTGAGTCATGGACTTTAA
1 ATGCCACTGAGTCGTGGGCTTTGAGAAAAGATTGCCACTGAGTCGTGGACTTTAA
858425 AAAGGTATTT
Statistics
Matches: 133, Mismatches: 13, Indels: 4
0.89 0.09 0.03
Matches are distributed among these distances:
92 66 0.50
93 21 0.16
94 42 0.32
95 4 0.03
ACGTcount: A:0.30, C:0.16, G:0.27, T:0.27
Consensus pattern (93 bp):
ATGCCACTGAGTCGTGGGCTTTGAGAAAAGATTGCCACTGAGTCGTGGACTTTAAGAAAAAAATG
CCACTGAGTCAGTGGACTTTCGGACAAA
Found at i:858411 original size:61 final size:60
Alignment explanation
Indices: 858161--858422 Score: 251
Period size: 61 Copynumber: 4.2 Consensus size: 60
858151 AGAGTGCCTA
* * * *
858161 GAGTTGTGGACTTTGAAGAAAATATGCCATTGAGTCGTGGACTTTAAAAAGAGATTGCCACT
1 GAGTCGTGGACTTTG-AGAAAA-ATGCCACTGAGTCGTGGACTTTAAGAAGAGAATGCCACT
* * **
858223 GAGTTGTGTACTTTGGAGAAAAAAATGCCACTGAGTCAGTGGACTTTGGGACA-A-AATGCCACT
1 GAGTCGTGGACTTT-GAG--AAAAATGCCACTGAGTC-GTGGACTTTAAGA-AGAGAATGCCACT
* * *
858286 GAGTCGTGGGCTTTGAGAAAATATTGCCACTGAGTCGTGGACTTTAAGAAAAAAATGCCACT
1 GAGTCGTGGACTTTGAGAAAA-A-TGCCACTGAGTCGTGGACTTTAAGAAGAGAATGCCACT
* * * * *
858348 GAGTCGTGGACTTTCG-GACAAAATGCTAGTGAGTCGTGGGCTTTGAGAAGAGATTGCCACT
1 GAGTCGTGGACTTT-GAGA-AAAATGCCACTGAGTCGTGGACTTTAAGAAGAGAATGCCACT
*
858409 GAGTCATGGACTTT
1 GAGTCGTGGACTTT
858423 AAAAAGGTAT
Statistics
Matches: 169, Mismatches: 20, Indels: 23
0.80 0.09 0.11
Matches are distributed among these distances:
60 5 0.03
61 57 0.34
62 55 0.33
63 36 0.21
64 15 0.09
65 1 0.01
ACGTcount: A:0.30, C:0.15, G:0.28, T:0.27
Consensus pattern (60 bp):
GAGTCGTGGACTTTGAGAAAAATGCCACTGAGTCGTGGACTTTAAGAAGAGAATGCCACT
Found at i:867263 original size:42 final size:42
Alignment explanation
Indices: 867204--867299 Score: 113
Period size: 42 Copynumber: 2.3 Consensus size: 42
867194 CCCATTTTTC
* *
867204 GAGGACAAAGGAAAAAGGGAAACGAAA-TACGTCCTGCTCTTT
1 GAGGACAAAAGAAAAA-GGAAAAGAAAGTACGTCCTGCTCTTT
* * ** *
867246 GAGGATAAAAGAAAAAGGAAAATAAAGTGGGTCTTGCTCTTT
1 GAGGACAAAAGAAAAAGGAAAAGAAAGTACGTCCTGCTCTTT
867288 GAGGACAAAAGA
1 GAGGACAAAAGA
867300 GAATAGAAGG
Statistics
Matches: 45, Mismatches: 8, Indels: 2
0.82 0.15 0.04
Matches are distributed among these distances:
41 8 0.18
42 37 0.82
ACGTcount: A:0.44, C:0.11, G:0.27, T:0.18
Consensus pattern (42 bp):
GAGGACAAAAGAAAAAGGAAAAGAAAGTACGTCCTGCTCTTT
Found at i:867488 original size:60 final size:60
Alignment explanation
Indices: 867322--867691 Score: 336
Period size: 60 Copynumber: 6.3 Consensus size: 60
867312 AGGAAGTGTG
* * *
867322 TCCTACTCTTTGAGGATTGAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAGGCA
1 TCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTT-AAAAGAAAAGGCA
* * * * * *
867383 TCCTACCCTTTGAGGACT-AGAAGGTGCCACCAACATGTGCGGGCTTTGCAAAA-AAAAAGCA
1 TCCTGCTCTTTGAGGACTGA-AAAGTGCCACCAACTTGTGTGGGCTTT--AAAAGAAAAGGCA
* * *
867444 TCCTGCTC-TTAAGGACTGAAAAGTGCCACCAACTTGTGTTGGCTTTAAAAGGAGAAGGCA
1 TCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAA-GAAAAGGCA
* * * * * * *
867504 TCCTACTCTTTGAGGACTG-GAGGTGCCACCAGCTTATGTAGGCTTTAAAAGAAAAAGGCG
1 TCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAG-AAAAGGCA
* * * ** * *
867564 CCCAGCTCATTGAGGACTGAAGGGTGCCACCAACTCGTGTGGGCTTT-----AAAAGGCG
1 TCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCA
* *
867619 TCCTGCTCTTTGAGGATTGAAAAGTGCCACCAACTTGTGTGGGCTTT----G-AAAGGCG
1 TCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCA
867674 TCCTGCTCTTTGAGGACT
1 TCCTGCTCTTTGAGGACT
867692 AAAGGGTGAA
Statistics
Matches: 256, Mismatches: 44, Indels: 24
0.79 0.14 0.07
Matches are distributed among these distances:
55 72 0.28
58 4 0.02
59 1 0.00
60 92 0.36
61 83 0.32
62 4 0.02
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (60 bp):
TCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCA
Found at i:867616 original size:121 final size:120
Alignment explanation
Indices: 867331--867616 Score: 353
Period size: 121 Copynumber: 2.4 Consensus size: 120
867321 GTCCTACTCT
*
867331 TTGAGGATTGAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAA-GAAAAGGCATCCTACCCTTTG
1 TTGAGGACTGAAAAGTGCCACCAACTCGTGTGGGCTTT-AAAAGGAAAAGGCATCCTACCCTTTG
* * * *
867395 AGGACTAGAAGGTGCCACCAACATGTGCGGGCTTTGCAAAAAAAAAGCATCCTGCTC
65 AGGACTAGAAGGTGCCACCAACATATGCAGGCTTT-CAAAAAAAAAGCACCCAGCTC
* * * * *
867452 TTAAGGACTGAAAAGTGCCACCAACTTGTGTTGGCTTTAAAAGGAGAAGGCATCCTACTCTTTGA
1 TTGAGGACTGAAAAGTGCCACCAACTCGTGTGGGCTTTAAAAGGAAAAGGCATCCTACCCTTTGA
* * * * *
867517 GGACT-GGAGGTGCCACCAGCTTATGTAGGCTTT-AAAAGAAAAAGGCGCCCAGCTC
66 GGACTAGAAGGTGCCACCAACATATGCAGGCTTTCAAAA-AAAAA-GCACCCAGCTC
**
867572 ATTGAGGACTGAAGGGTGCCACCAACTCGTGTGGGCTTTAAAAGG
1 -TTGAGGACTGAAAAGTGCCACCAACTCGTGTGGGCTTTAAAAGG
867617 CGTCCTGCTC
Statistics
Matches: 141, Mismatches: 20, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
118 4 0.03
119 5 0.04
120 34 0.24
121 98 0.70
ACGTcount: A:0.30, C:0.21, G:0.27, T:0.22
Consensus pattern (120 bp):
TTGAGGACTGAAAAGTGCCACCAACTCGTGTGGGCTTTAAAAGGAAAAGGCATCCTACCCTTTGA
GGACTAGAAGGTGCCACCAACATATGCAGGCTTTCAAAAAAAAAGCACCCAGCTC
Found at i:867632 original size:55 final size:55
Alignment explanation
Indices: 867556--867699 Score: 207
Period size: 55 Copynumber: 2.6 Consensus size: 55
867546 CTTTAAAAGA
* * *
867556 AAAAGGCGCCCAGCTCATTGAGGACTGAAGGGTGCCACCAACTCGTGTGGGCTTT
1 AAAAGGCGTCCTGCTCTTTGAGGACTGAAGGGTGCCACCAACTCGTGTGGGCTTT
* ** *
867611 AAAAGGCGTCCTGCTCTTTGAGGATTGAAAAGTGCCACCAACTTGTGTGGGCTTT
1 AAAAGGCGTCCTGCTCTTTGAGGACTGAAGGGTGCCACCAACTCGTGTGGGCTTT
* *
867666 GAAAGGCGTCCTGCTCTTTGAGGACTAAAGGGTG
1 AAAAGGCGTCCTGCTCTTTGAGGACTGAAGGGTG
867700 AAAGGAGAGA
Statistics
Matches: 77, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
55 77 1.00
ACGTcount: A:0.24, C:0.22, G:0.31, T:0.24
Consensus pattern (55 bp):
AAAAGGCGTCCTGCTCTTTGAGGACTGAAGGGTGCCACCAACTCGTGTGGGCTTT
Found at i:867823 original size:60 final size:60
Alignment explanation
Indices: 867713--867941 Score: 236
Period size: 60 Copynumber: 3.9 Consensus size: 60
867703 GGAGAGAGTG
* * *
867713 TCCTACTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGCCA
1 TCCTGCTCTTTGAGGACTA-AAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGCCA
* * * * *
867774 TCCTGCTCTTTGAGGACTAAAGGTGCCACCAGCTTATGTGGCCTTTAAAAGAAAAAGGCA
1 TCCTGCTCTTTGAGGACTAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGCCA
* * * *
867834 TCGTGCTCGTTGAGGACTGAAAGGTGCCACCAACTCGTGTGGGCTTTAAAA-G----G-CG
1 TCCTGCTCTTTGAGGACT-AAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGCCA
* ** * *
867889 TCCTGCTCTTTGAGGTCTGAAAATTGCCTCCAACTTGTGTGGGCTTTGAAAGG
1 TCCTGCTCTTTGAGGACT-AAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGG
867942 CGTCCTGCTC
Statistics
Matches: 142, Mismatches: 24, Indels: 9
0.81 0.14 0.05
Matches are distributed among these distances:
55 44 0.31
56 2 0.01
60 50 0.35
61 46 0.32
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (60 bp):
TCCTGCTCTTTGAGGACTAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGCCA
Found at i:867902 original size:55 final size:56
Alignment explanation
Indices: 867712--867969 Score: 247
Period size: 55 Copynumber: 4.5 Consensus size: 56
867702 AGGAGAGAGT
*
867712 GTCCTACTCTTTGAGGACTAGAAA-GTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGCC
1 GTCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTAAAA--AG--G-C
* * * *
867773 ATCCTGCTCTTTGAGGACT-AAAGGTGCCACCAGCTTATGTGGCCTTTAAAAGAAAAAGGC
1 GTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT-----AAAAAGGC
* * * *
867833 ATCGTGCTCGTTGAGGACTGAAAGGTGCCACCAACTCGTGTGGGCTTT-AAAAGGC
1 GTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGGC
* ** * *
867888 GTCCTGCTCTTTGAGGTCTGAAAATTGCCTCCAACTTGTGTGGGCTTT-GAAAGGC
1 GTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGGC
867943 GTCCTGCTCTTTGAGGACT-AAATGGTG
1 GTCCTGCTCTTTGAGGACTGAAA-GGTG
867970 AAAGGAGAGA
Statistics
Matches: 166, Mismatches: 23, Indels: 22
0.79 0.11 0.10
Matches are distributed among these distances:
54 3 0.02
55 73 0.44
59 3 0.02
60 39 0.23
61 42 0.25
63 2 0.01
65 4 0.02
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.27
Consensus pattern (56 bp):
GTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGGC
Found at i:867944 original size:270 final size:269
Alignment explanation
Indices: 867455--868169 Score: 1132
Period size: 270 Copynumber: 2.6 Consensus size: 269
867445 CCTGCTCTTA
* *
867455 AGGACT-GAAAAGTGCCACCAACTTGTGTTGGCTTTAAAAGGAGAAGGCATCCTACTCTTTGAGG
1 AGGACTAG-AAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGCCATCCTACTCTTTGAGG
** ** *
867519 ACTGGAGGTGCCACCAGCTTATGTAGGCTTTAAAAGAAAAAGGCGCCCAGCTCATTGAGGACTGA
65 ACTAAAGGTGCCACCAGCTTATGT-GGCTTTAAAAGAAAAAGGCATCCTGCTCATTGAGGACTGA
*
867584 AGGGTGCCACCAACTCGTGTGGGCTTTAAAAGGCGTCCTGCTCTTTGAGGATTGAAAAGTGCCAC
129 AAGGTGCCACCAACTCGTGTGGGCTTTAAAAGGCGTCCTGCTCTTTGAGGATTGAAAAGTGCCAC
867649 CAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTAAAGGGTGAAAGGAGAGAGTGT
194 CAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTAAAGGGTGAAAGGAGAGAGTGT
867714 CCTACTCTTTG
259 CCTACTCTTTG
*
867725 AGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGCCATCCTGCTCTTTGAGGA
1 AGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGCCATCCTACTCTTTGAGGA
* *
867790 CTAAAGGTGCCACCAGCTTATGTGGCCTTTAAAAGAAAAAGGCATCGTGCTCGTTGAGGACTGAA
66 CTAAAGGTGCCACCAGCTTATGTGG-CTTTAAAAGAAAAAGGCATCCTGCTCATTGAGGACTGAA
* *
867855 AGGTGCCACCAACTCGTGTGGGCTTTAAAAGGCGTCCTGCTCTTTGAGG-TCTGAAAATTGCCTC
130 AGGTGCCACCAACTCGTGTGGGCTTTAAAAGGCGTCCTGCTCTTTGAGGAT-TGAAAAGTGCCAC
*
867919 CAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTAAATGGTGAAAGGAGAGAGTGT
194 CAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTAAAGGGTGAAAGGAGAGAGTGT
*
867984 CCTGCTCTTTG
259 CCTACTCTTTG
* * *
867995 AGGACTAGAAAGTGCCACCAACTTGTGTGGGATTTAAAAGGATAAGCCGTCCTACTCTTTGAGGA
1 AGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGCCATCCTACTCTTTGAGGA
* *
868060 -TAGAAGGTGCCACCAGCATATGTGGGCTTTAAAAGAAAAAGGCATCCTGCTCTTTGAGGACT-A
66 CTA-AAGGTGCCACCAGCTTATGT-GGCTTTAAAAGAAAAAGGCATCCTGCTCATTGAGGACTGA
* * *
868123 GACGGTGCCACCGACTCGTGTGGGCTTTAAAAGGCGTCCTCCTCTTT
129 -AAGGTGCCACCAACTCGTGTGGGCTTTAAAAGGCGTCCTGCTCTTT
868170 AGAGACTAAA
Statistics
Matches: 414, Mismatches: 25, Indels: 12
0.92 0.06 0.03
Matches are distributed among these distances:
269 6 0.01
270 405 0.98
271 3 0.01
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (269 bp):
AGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGCCATCCTACTCTTTGAGGA
CTAAAGGTGCCACCAGCTTATGTGGCTTTAAAAGAAAAAGGCATCCTGCTCATTGAGGACTGAAA
GGTGCCACCAACTCGTGTGGGCTTTAAAAGGCGTCCTGCTCTTTGAGGATTGAAAAGTGCCACCA
ACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTAAAGGGTGAAAGGAGAGAGTGTCC
TACTCTTTG
Found at i:868053 original size:61 final size:61
Alignment explanation
Indices: 867982--868156 Score: 226
Period size: 60 Copynumber: 2.9 Consensus size: 61
867972 AGGAGAGAGT
* * *
867982 GTCCTGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGATTTAAAAGGATAAGCC
1 GTCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGCC
* * * * * *
868043 GTCCTACTCTTTGAGGA-TAGAAGGTGCCACCAGCATATGTGGGCTTTAAAAGAAAAAGGC
1 GTCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGCC
* * * *
868103 ATCCTGCTCTTTGAGGACTAGACGGTGCCACCGACTCGTGTGGGCTTTAAAAGG
1 GTCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGG
868157 CGTCCTCCTC
Statistics
Matches: 95, Mismatches: 18, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
60 50 0.53
61 45 0.47
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (61 bp):
GTCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGCC
Found at i:868273 original size:215 final size:210
Alignment explanation
Indices: 867761--868280 Score: 622
Period size: 215 Copynumber: 2.5 Consensus size: 210
867751 GTGGGCTTTA
* * * * *
867761 AAAGGAGA-AGCCATCCTGCTCTTTGAGGACTA-AAGGTGCCACCAGCTTATGTGGCCTTTAAAA
1 AAAGGAGAGAG-CGTCCTGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTTAAAA
* * * * *
867824 GAAAAAGGCATCGTGCTCGTTGAGGACTGAAAGGTGCCACCAACTCGTGTGGGCTTTAAAAGGCG
65 GGAAAAGGCATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTCATGTGGGCTTTAAAAGGCA
* * * * * *
867889 TCCTGCTCTTTGAGGTCTGAAAATTGCCTCCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTT
130 TCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTCGTGTGGGCTTTAAAAGGCGTCCTCCTCTT
*
867954 TGAGGACTAAATGGTG
195 TGAGGACTAAAGGGTG
* *
867970 AAAGGAGAGAGTGTCCTGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGATTTAAAAG
1 AAAGGAGAGAGCGTCCTGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAG
* * * * *
868035 GATAAGCCGTCCTACTCTTTGAGGA-T-AGAAGGTGCCACCAGCAT-ATGTGGGCTTTAAAAGAA
66 GAAAAGGCATCCTGCTCTTTGAGGACTGA-AAGGTGCCACCAAC-TCATGTGGGCTTT------A
** *
868097 AAAGGCATCCTGCTCTTTGAGGACT-AGACGGTGCCACCGACTCGTGTGGGCTTTAAAAGGCGTC
123 AAAGGCATCCTGCTCTTTGAGGACTGA-AAAGTGCCACCAACTCGTGTGGGCTTTAAAAGGCGTC
868161 CTCCTCTTT-AGAGACTAAAGGGTG
187 CTCCTCTTTGAG-GACTAAAGGGTG
*
868185 AAAGGAGAGAGCGTCCTGCTCTTTGAGGACTAGAAAGTGCTACCAACTTGTGTGGGCTTTAAAAG
1 AAAGGAGAGAGCGTCCTGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAG
* *
868250 GAAAAGGCATCCCGCTTTTTGAGGACTGAAA
66 GAAAAGGCATCCTGCTCTTTGAGGACTGAAA
868281 AGTGAAAGGA
Statistics
Matches: 261, Mismatches: 36, Indels: 21
0.82 0.11 0.07
Matches are distributed among these distances:
208 1 0.00
209 51 0.20
210 48 0.18
214 3 0.01
215 154 0.59
216 3 0.01
217 1 0.00
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.25
Consensus pattern (210 bp):
AAAGGAGAGAGCGTCCTGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAG
GAAAAGGCATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTCATGTGGGCTTTAAAAGGCAT
CCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTCGTGTGGGCTTTAAAAGGCGTCCTCCTCTTT
GAGGACTAAAGGGTG
Found at i:869497 original size:60 final size:61
Alignment explanation
Indices: 869296--869645 Score: 333
Period size: 61 Copynumber: 5.9 Consensus size: 61
869286 AAGGAAGTGT
* * * * *
869296 GTCCTGC-CTTTGAGCATTGAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAGGC
1 GTCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGAGAAGGC
* * * * * * * *
869356 GTCCTGCCCTTTGAGGACTGGAAGGGGCCAGCAACTTGTGCGGGCTTTGCAAA-AAGAAAGC
1 GTCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTG-AAAGGAGAAGGC
* * * *
869417 ATCCTTCTCTTTGAGGACTGAAAAGTGCCACCAACTTATGTGGGCTTT-AAAGGAGAAGGT
1 GTCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGAGAAGGC
* * * * * * *
869477 GTCCTGCTCTTTGAGGACTG-AAGGTCCCACCAGCTTATGTGGGCTTTAAAAGAAAAAGGC
1 GTCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGAGAAGGC
* * * ** * *
869537 CTCCTGCTTTTTGAGGACTGGAGGGTACCACCAACTCGTGTGGGCTTT---A--A-AAGGC
1 GTCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGAGAAGGC
*
869592 GTCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACGTGTGTGGGCTTTGAAAGG
1 GTCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGG
869646 CATCCTACTC
Statistics
Matches: 234, Mismatches: 46, Indels: 20
0.78 0.15 0.07
Matches are distributed among these distances:
55 45 0.19
56 1 0.00
58 2 0.01
59 27 0.12
60 57 0.24
61 99 0.42
62 3 0.01
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.25
Consensus pattern (61 bp):
GTCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGAGAAGGC
Found at i:869536 original size:181 final size:177
Alignment explanation
Indices: 869289--869645 Score: 436
Period size: 181 Copynumber: 2.0 Consensus size: 177
869279 AGAAGGGAAG
* * *
869289 GAAGTGTGTCCTGCCTTTGAGCATTGAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAG
1 GAAGTGTGTCCTGCCTTTGAGCACTGAAAAGTCCCACCAACTCATGTGGGCTTTGAAAAGAAAAG
* * * *
869354 GCGTCCTGCCCTTTGAGGACTGGAAGGG-GCCAGCAACTTGTGCGGGCTTTGCAAAAAGAAAGCA
66 GCCTCCTGCCCTTTGAGGACTGG-AGGGTACCACCAACTCGTGCGGGCTTT---AAAAG---GCA
* *
869418 TCCTTCTCTTTGAGGACTGAAAAGTGCCACCAACTTATGTGGGCTTT-AAAGGA
124 TCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACGTATGTGGGCTTTGAAAGGA
* * * *
869471 GAAG-GTGTCCTGCTCTTTGAGGACTG-AAGGTCCCACCAGCTTATGTGGGCTTT-AAAAGAAAA
1 GAAGTGTGTCCTGC-CTTTGAGCACTGAAAAGTCCCACCAACTCATGTGGGCTTTGAAAAG-AAA
** * *
869533 AGGCCTCCTGCTTTTTGAGGACTGGAGGGTACCACCAACTCGTGTGGGCTTTAAAAGGCGTCCTG
64 AGGCCTCCTGCCCTTTGAGGACTGGAGGGTACCACCAACTCGTGCGGGCTTTAAAAGGCATCCTG
*
869598 CTCTTTGAGGACTGAAAAGTGCCACCAACGTGTGTGGGCTTTGAAAGG
129 CTCTTTGAGGACTGAAAAGTGCCACCAACGTATGTGGGCTTTGAAAGG
869646 CATCCTACTC
Statistics
Matches: 153, Mismatches: 18, Indels: 14
0.83 0.10 0.08
Matches are distributed among these distances:
175 46 0.30
176 5 0.03
178 5 0.03
180 9 0.06
181 74 0.48
182 14 0.09
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.25
Consensus pattern (177 bp):
GAAGTGTGTCCTGCCTTTGAGCACTGAAAAGTCCCACCAACTCATGTGGGCTTTGAAAAGAAAAG
GCCTCCTGCCCTTTGAGGACTGGAGGGTACCACCAACTCGTGCGGGCTTTAAAAGGCATCCTGCT
CTTTGAGGACTGAAAAGTGCCACCAACGTATGTGGGCTTTGAAAGGA
Found at i:869568 original size:120 final size:117
Alignment explanation
Indices: 869297--869613 Score: 329
Period size: 120 Copynumber: 2.7 Consensus size: 117
869287 AGGAAGTGTG
* * *
869297 TCCTGC-CTTTGAGCATTGAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAGGCGTCCT
1 TCCTGCTCTTTGAGGACTGAAAAGTACCACCAACTCGTGTGGGCTTT--AAAG-AAAGGCGTCCT
* * * * *
869361 GCCCTTTGAGGACTGGAAGGGGCCAGCAACTTGTGCGGGCTTTGCAAAAAGAAAGCA
63 GCTCTTTGAGGACT-GAAGGGCCCACCAACTTATGCGGGCTTT-CAAAAAAAAAGCA
* * ** *
869418 TCCTTCTCTTTGAGGACTGAAAAGTGCCACCAACTTATGTGGGCTTTAAAGGAGAAGGTGTCCTG
1 TCCTGCTCTTTGAGGACTGAAAAGTACCACCAACTCGTGTGGGCTTTAAA-GA-AAGGCGTCCTG
* * * *
869483 CTCTTTGAGGACTGAAGGTCCCACCAGCTTATGTGGGCTTT-AAAAGAAAAAGGCC
64 CTCTTTGAGGACTGAAGGGCCCACCAACTTATGCGGGCTTTCAAAA-AAAAA-GCA
* * **
869538 TCCTGCTTTTTGAGGACTGGAGGGTACCACCAACTCGTGTGGGCTTT--A-AAAGGCGTCCTGCT
1 TCCTGCTCTTTGAGGACTGAAAAGTACCACCAACTCGTGTGGGCTTTAAAGAAAGGCGTCCTGCT
869600 CTTTGAGGACTGAA
66 CTTTGAGGACTGAA
869614 AAGTGCCACC
Statistics
Matches: 167, Mismatches: 24, Indels: 16
0.81 0.12 0.08
Matches are distributed among these distances:
115 26 0.16
116 1 0.01
118 5 0.03
119 4 0.02
120 67 0.40
121 28 0.17
122 36 0.22
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (117 bp):
TCCTGCTCTTTGAGGACTGAAAAGTACCACCAACTCGTGTGGGCTTTAAAGAAAGGCGTCCTGCT
CTTTGAGGACTGAAGGGCCCACCAACTTATGCGGGCTTTCAAAAAAAAAGCA
Found at i:869816 original size:60 final size:60
Alignment explanation
Indices: 869689--869860 Score: 179
Period size: 60 Copynumber: 2.9 Consensus size: 60
869679 AGAGAGCATC
* * * * * *
869689 CTGCTCTTTGAGGACTCGAAAGTGCCACCAACTTGTGTGGGTTTTAAAAGGAGAAGCCGT
1 CTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTATGCGGGCTTTAAAAGGAAAAGCCGT
* * *
869749 CTAGCTCTTTGAGGA-TTGAAGGTGCCACCAGCTTATGCGGGCTTTAAAA-GAAAAGGGCGTT
1 CT-GCTCTTTGAGGACTAGAAGGTGCCACCAACTTATGCGGGCTTTAAAAGGAAAA-GCCG-T
* **
869810 CTGCTCTTTGAGGACTAGACGGTGCCACCAACTCGTGTC-GGCTTTAAAAGG
1 CTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTATG-CGGGCTTTAAAAGG
869861 CGTCCTGCTC
Statistics
Matches: 93, Mismatches: 13, Indels: 10
0.80 0.11 0.09
Matches are distributed among these distances:
59 4 0.04
60 45 0.48
61 42 0.45
62 2 0.02
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.26
Consensus pattern (60 bp):
CTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTATGCGGGCTTTAAAAGGAAAAGCCGT
Found at i:869871 original size:55 final size:56
Alignment explanation
Indices: 869799--869936 Score: 181
Period size: 55 Copynumber: 2.5 Consensus size: 56
869789 GCTTTAAAAG
* ** *
869799 AAAAGGGCGTTCTGCTCTTTGAGGACTAGAC-GGTGCCACCAACTCGTGTCGGCTTT
1 AAAA-GGCGTCCTGCTCTTTGAGGACTAGACAAATGCCACAAACTCGTGTCGGCTTT
* *
869855 AAAAGGCGTCCTGCTCTTTGAGGACT-GACAAATGCCACAAACTTGTGTGGGCTTT
1 AAAAGGCGTCCTGCTCTTTGAGGACTAGACAAATGCCACAAACTCGTGTCGGCTTT
* *
869910 GAAAGGCGTCCTGCTCTTTAAGGACTA
1 AAAAGGCGTCCTGCTCTTTGAGGACTA
869937 AAGGGTGAAA
Statistics
Matches: 72, Mismatches: 8, Indels: 4
0.86 0.10 0.05
Matches are distributed among these distances:
54 3 0.04
55 65 0.90
56 4 0.06
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.27
Consensus pattern (56 bp):
AAAAGGCGTCCTGCTCTTTGAGGACTAGACAAATGCCACAAACTCGTGTCGGCTTT
Found at i:869904 original size:270 final size:269
Alignment explanation
Indices: 869414--870035 Score: 926
Period size: 270 Copynumber: 2.3 Consensus size: 269
869404 GCAAAAAGAA
* * **
869414 AGCATCCTTCTCTTTGAGGACTGAAAAGTGCCACCAACTTATGTGGGCTTT-AAAGGAGAAGGTG
1 AGCATCCTGCTCTTTGAGGACTG-AAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGCCG
*
869478 TCCTGCTCTTTGAGGACTGAAGGTCCCACCAGCTTATGTGGGCTTTAAAAGAAAAAGGCCTCCTG
65 TCCTGCTCTTTGAGGACTGAAGGTCCCACCAGCTTATGCGGGCTTTAAAAGAAAAAGGCCTCCTG
* * * *
869543 CTTTTTGAGGACTGGAGGGTACCACCAACTCGTGTGGGCTTTAAAAGGCGTCCTGCTCTTTGAGG
130 CTCTTTGAGGACTAGACGGTACCACCAACTCGTGTCGGCTTTAAAAGGCGTCCTGCTCTTTGAGG
* *
869608 ACTGAAAAGTGCCACCAACGTGTGTGGGCTTTGAAAGGCATCCTACTCTTTAAGGACTAAATGGT
195 ACTGAAAAGTGCCACAAACGTGTGTGGGCTTTGAAAGGCATCCTACTCTTTAAGGACTAAAGGGT
869673 GAAAGGAGAG
260 GAAAGGAGAG
*
869683 AGCATCCTGCTCTTTGAGGACTCGAAAGTGCCACCAACTTGTGTGGGTTTTAAAAGGAGAAGCCG
1 AGCATCCTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGCCG
* * * * *
869748 T-CTAGCTCTTTGAGGATTGAAGGTGCCACCAGCTTATGCGGGCTTTAAAAGAAAAGGGCGTTCT
65 TCCT-GCTCTTTGAGGACTGAAGGTCCCACCAGCTTATGCGGGCTTTAAAAGAAAAAGGCCTCCT
*
869812 GCTCTTTGAGGACTAGACGGTGCCACCAACTCGTGTCGGCTTTAAAAGGCGTCCTGCTCTTTGAG
129 GCTCTTTGAGGACTAGACGGTACCACCAACTCGTGTCGGCTTTAAAAGGCGTCCTGCTCTTTGAG
* * *
869877 GACTGACAAA-TGCCACAAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTAAGGACTAAAGG
194 GACTGA-AAAGTGCCACAAACGTGTGTGGGCTTTGAAAGGCATCCTACTCTTTAAGGACTAAAGG
869941 GTGAAAGGAGAG
258 GTGAAAGGAGAG
* * * * * *
869953 AGCGTCCTGCTTTTTGAGGACTAGAAAGTGCTACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCA
1 AGCATCCTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGCCG
*
870018 TCCTGCTTTTTGAGGACT
65 TCCTGCTCTTTGAGGACT
870036 AAAAGGTGAA
Statistics
Matches: 317, Mismatches: 31, Indels: 9
0.89 0.09 0.03
Matches are distributed among these distances:
269 48 0.15
270 264 0.83
271 5 0.02
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (269 bp):
AGCATCCTGCTCTTTGAGGACTGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGCCGT
CCTGCTCTTTGAGGACTGAAGGTCCCACCAGCTTATGCGGGCTTTAAAAGAAAAAGGCCTCCTGC
TCTTTGAGGACTAGACGGTACCACCAACTCGTGTCGGCTTTAAAAGGCGTCCTGCTCTTTGAGGA
CTGAAAAGTGCCACAAACGTGTGTGGGCTTTGAAAGGCATCCTACTCTTTAAGGACTAAAGGGTG
AAAGGAGAG
Found at i:870902 original size:41 final size:39
Alignment explanation
Indices: 870818--870917 Score: 103
Period size: 41 Copynumber: 2.5 Consensus size: 39
870808 CTCCCAGTTT
* * *
870818 TTGAGGACAAAAGAAAAAAGAATGAAATAGGTCTTGCTCC
1 TTGAGGACAAAGGAAAAAAGAA-GAAAAAGGTCCTGCTCC
*
870858 TTGAGGACAAAGGAAAAGAAGAA-AATAAAGTGTCCTGCTTC
1 TTGAGGACAAAGGAAAA-AAGAAGAA-AAAG-GTCCTGCTCC
*
870899 TTGAGGGCAAAGTGAAAAA
1 TTGAGGACAAAG-GAAAAA
870918 GAGTACATCC
Statistics
Matches: 51, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
39 2 0.04
40 19 0.37
41 25 0.49
42 5 0.10
ACGTcount: A:0.45, C:0.11, G:0.25, T:0.19
Consensus pattern (39 bp):
TTGAGGACAAAGGAAAAAAGAAGAAAAAGGTCCTGCTCC
Found at i:871146 original size:61 final size:61
Alignment explanation
Indices: 871078--871348 Score: 227
Period size: 61 Copynumber: 4.5 Consensus size: 61
871068 GATTGAAAAA
* *
871078 TGCCACCAACTCCTGTGGGCTTT-AACAAGAAAAGGTGTCCTGCCCTTCGAGGACTAGAAGG
1 TGCCACCAACTCCTGTGGGCTTTGAA-AAGAAAAGGCGTCCTACCCTTCGAGGACTAGAAGG
* *
871139 TGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAGGCGTCCTACCCTTTGAGGACTAGAAGG
1 TGCCACCAACTCCTGTGGGCTTTGAAAAGAAAAGGCGTCCTACCCTTCGAGGACTAGAAGG
* * * * * * * *
871200 TGCCACCAACAT-GTGCGGGCTTTGCAAAA-AAAAAGCATCCTGCTCTTTGAGGACT-GGAGG
1 TGCCACCAAC-TCCTGTGGGCTTTG-AAAAGAAAAGGCGTCCTACCCTTCGAGGACTAGAAGG
* * ** * * * *
871260 CGCCACCAGCTTATGTAGCCTTT-AAAAGAAAAAGGCG-CCCAGCTCATT-GAGGACT-GAAGGG
1 TGCCACCAACTCCTGTGGGCTTTGAAAAG-AAAAGGCGTCCTA-C-CCTTCGAGGACTAGAA-GG
*
871321 TGCCACCAACTCGTGTGGGCTTT-AAAAG
1 TGCCACCAACTCCTGTGGGCTTTGAAAAG
871349 GTGTCCTGCT
Statistics
Matches: 172, Mismatches: 29, Indels: 18
0.79 0.13 0.08
Matches are distributed among these distances:
58 4 0.02
59 3 0.02
60 35 0.20
61 123 0.72
62 7 0.04
ACGTcount: A:0.28, C:0.24, G:0.27, T:0.21
Consensus pattern (61 bp):
TGCCACCAACTCCTGTGGGCTTTGAAAAGAAAAGGCGTCCTACCCTTCGAGGACTAGAAGG
Found at i:871365 original size:55 final size:55
Alignment explanation
Indices: 871289--871432 Score: 198
Period size: 55 Copynumber: 2.6 Consensus size: 55
871279 CTTTAAAAGA
* * *
871289 AAAAGGCGCCCAGCTCATTGAGGACTGAAGGGTGCCACCAACTCGTGTGGGCTTT
1 AAAAGGCGTCCTGCTCTTTGAGGACTGAAGGGTGCCACCAACTCGTGTGGGCTTT
* * ** *
871344 AAAAGGTGTCCTGCTCTTTGAGGATTGAAAAGTGCCACCAACTTGTGTGGGCTTT
1 AAAAGGCGTCCTGCTCTTTGAGGACTGAAGGGTGCCACCAACTCGTGTGGGCTTT
* *
871399 GAAAGGCGTCCTGCTCTTTGAGGACTAAAGGGTG
1 AAAAGGCGTCCTGCTCTTTGAGGACTGAAGGGTG
871433 AAAGGAGAGA
Statistics
Matches: 75, Mismatches: 14, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
55 75 1.00
ACGTcount: A:0.24, C:0.21, G:0.31, T:0.25
Consensus pattern (55 bp):
AAAAGGCGTCCTGCTCTTTGAGGACTGAAGGGTGCCACCAACTCGTGTGGGCTTT
Found at i:871518 original size:61 final size:59
Alignment explanation
Indices: 871446--871674 Score: 236
Period size: 60 Copynumber: 3.9 Consensus size: 59
871436 GGAGAGAGTG
* *
871446 TCCTACTCTTTGAGGACTAGAAAGTGCCACGAACTTGTGTGGGCTTTAAAAGGAGAAGCCA
1 TCCTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAG-CA
* * * * *
871507 TCCTGCTCTTTGAGGACT-AAAGGTGCCACCAGCTTCTGTGGCCTTTAAAAGAAAAAGGCA
1 TCCTGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAA-GCA
* * * *
871567 TCTTGCTCGTTGAGGACTGAAAGGTGCCACCAACTCGTGTGGGCTTT-AAA--AG--GCG
1 TCCTGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGCA
* * *
871622 TCCTGCTCTTTGAGGACTGAAAATTGCCTCCAACTTGTGTGGGCTTTGAAAGG
1 TCCTGCTCTTTGAGGACTG-AAAGTGCCACCAACTTGTGTGGGCTTTAAAAGG
871675 CGTCCTGCTC
Statistics
Matches: 141, Mismatches: 20, Indels: 17
0.79 0.11 0.10
Matches are distributed among these distances:
55 40 0.28
56 6 0.04
58 1 0.01
59 3 0.02
60 49 0.35
61 42 0.30
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (59 bp):
TCCTGCTCTTTGAGGACTGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGCA
Found at i:871635 original size:55 final size:56
Alignment explanation
Indices: 871445--871702 Score: 231
Period size: 55 Copynumber: 4.5 Consensus size: 56
871435 AGGAGAGAGT
* * *
871445 GTCCTACTCTTTGAGGACTAGAAA-GTGCCACGAACTTGTGTGGGCTTTAAAAGGAGAAGCC
1 GTCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTCGTGTGGGCTTTAAAA--AG--G-C
* * *
871506 ATCCTGCTCTTTGAGGACT-AAAGGTGCCACCAGCTTC-TGTGGCCTTTAAAAGAAAAAGGC
1 GTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAAC-TCGTGTGGGCTTT-----AAAAAGGC
* * *
871566 ATCTTGCTCGTTGAGGACTGAAAGGTGCCACCAACTCGTGTGGGCTTT-AAAAGGC
1 GTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTCGTGTGGGCTTTAAAAAGGC
** * * *
871621 GTCCTGCTCTTTGAGGACTGAAAATTGCCTCCAACTTGTGTGGGCTTT-GAAAGGC
1 GTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTCGTGTGGGCTTTAAAAAGGC
871676 GTCCTGCTCTTTGAGGACT-AAATGGTG
1 GTCCTGCTCTTTGAGGACTGAAA-GGTG
871703 AAAGGAGAGA
Statistics
Matches: 167, Mismatches: 20, Indels: 26
0.78 0.09 0.12
Matches are distributed among these distances:
54 3 0.02
55 75 0.45
59 3 0.02
60 38 0.23
61 42 0.25
63 2 0.01
65 4 0.02
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.27
Consensus pattern (56 bp):
GTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTCGTGTGGGCTTTAAAAAGGC
Found at i:871657 original size:270 final size:270
Alignment explanation
Indices: 871175--871903 Score: 1088
Period size: 270 Copynumber: 2.7 Consensus size: 270
871165 AAGAAAAGGC
* * * * * *
871175 GTCCTACCCTTTGAGGACTAGAAGGTGCCACCAACATGTGCGGGCTTTGCAAAA-AAAAAG-CAT
1 GTCCTACTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTT--AAAAGGAGAAGCCAT
** * * ** *
871238 CCTGCTCTTTGAGGACTGGAGGCGCCACCAGCTTATGTAGCCTTTAAAAGAAAAAGGCGCCCAGC
64 CCTGCTCTTTGAGGACTAAAGGTGCCACCAGCTTATGTGGCCTTTAAAAGAAAAAGGCATCCTGC
* *
871303 TCATTGAGGACTGAAGGGTGCCACCAACTCGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGAGGA
129 TCATTGAGGACTGAAAGGTGCCACCAACTCGTGTGGGCTTTAAAAGGCGTCCTGCTCTTTGAGGA
*
871368 TTGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTAAAGGGTG
194 CTGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTAAAGGGTG
871433 AAAGGAGAGAGT
259 AAAGGAGAGAGT
*
871445 GTCCTACTCTTTGAGGACTAGAAAGTGCCACGAACTTGTGTGGGCTTTAAAAGGAGAAGCCATCC
1 GTCCTACTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGCCATCC
* *
871510 TGCTCTTTGAGGACTAAAGGTGCCACCAGCTTCTGTGGCCTTTAAAAGAAAAAGGCATCTTGCTC
66 TGCTCTTTGAGGACTAAAGGTGCCACCAGCTTATGTGGCCTTTAAAAGAAAAAGGCATCCTGCTC
*
871575 GTTGAGGACTGAAAGGTGCCACCAACTCGTGTGGGCTTTAAAAGGCGTCCTGCTCTTTGAGGACT
131 ATTGAGGACTGAAAGGTGCCACCAACTCGTGTGGGCTTTAAAAGGCGTCCTGCTCTTTGAGGACT
* * *
871640 GAAAATTGCCTCCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTAAATGGTGAA
196 GAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTAAAGGGTGAA
871705 AGGAGAGAGT
261 AGGAGAGAGT
* * *
871715 GTCCTGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGATTTAAAAGGAGAAGCCGTCC
1 GTCCTACTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGCCATCC
* * *
871780 TACTCTTTGAGGAC-AGAAGGTGCCACCAGCATATGTGGGCTTTAAAAGAAAAAGGCATCCTGCT
66 TGCTCTTTGAGGACTA-AAGGTGCCACCAGCTTATGTGGCCTTTAAAAGAAAAAGGCATCCTGCT
* * * * *
871844 CTTTGAGTACT-AGACGGTGCCACCGACTCGTGTGGGCTTTAAAAGGCGTCCTCCTCTTTG
130 CATTGAGGACTGA-AAGGTGCCACCAACTCGTGTGGGCTTTAAAAGGCGTCCTGCTCTTTG
871904 GAGACTAAAG
Statistics
Matches: 418, Mismatches: 37, Indels: 8
0.90 0.08 0.02
Matches are distributed among these distances:
268 4 0.01
269 6 0.01
270 408 0.98
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (270 bp):
GTCCTACTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGCCATCC
TGCTCTTTGAGGACTAAAGGTGCCACCAGCTTATGTGGCCTTTAAAAGAAAAAGGCATCCTGCTC
ATTGAGGACTGAAAGGTGCCACCAACTCGTGTGGGCTTTAAAAGGCGTCCTGCTCTTTGAGGACT
GAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTAAAGGGTGAA
AGGAGAGAGT
Found at i:871846 original size:60 final size:61
Alignment explanation
Indices: 871716--871888 Score: 199
Period size: 60 Copynumber: 2.9 Consensus size: 61
871706 GGAGAGAGTG
* * * * * * *
871716 TCCTGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGATTTAAAAGGAGAAGCCG
1 TCCTGCTCTTTGAGGACTAGAAGGTGCCACCAGCATGTGTGGGCTTTAAAAGAAAAAGCCA
* * *
871777 TCCTACTCTTTGAGGAC-AGAAGGTGCCACCAGCATATGTGGGCTTTAAAAGAAAAAGGCA
1 TCCTGCTCTTTGAGGACTAGAAGGTGCCACCAGCATGTGTGGGCTTTAAAAGAAAAAGCCA
* *
871837 TCCTGCTCTTTGAGTACTAGACGGTGCCACC-G-ACTCGTGTGGGCTTTAAAAG
1 TCCTGCTCTTTGAGGACTAGAAGGTGCCACCAGCA-T-GTGTGGGCTTTAAAAG
871889 GCGTCCTCCT
Statistics
Matches: 95, Mismatches: 14, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
59 1 0.01
60 51 0.54
61 43 0.45
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (61 bp):
TCCTGCTCTTTGAGGACTAGAAGGTGCCACCAGCATGTGTGGGCTTTAAAAGAAAAAGCCA
Found at i:872006 original size:215 final size:210
Alignment explanation
Indices: 871494--872013 Score: 611
Period size: 215 Copynumber: 2.5 Consensus size: 210
871484 GTGGGCTTTA
* * * *
871494 AAAGGAGA-AGCCATCCTGCTCTTTGAGGACTA-AAGGTGCCACCAGCTTCTGTGGCCTTTAAAA
1 AAAGGAGAGAG-CATCCTGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTTAAAA
* * * * * *
871557 GAAAAAGGCATCTTGCTCGTTGAGGACTGAAAGGTGCCACCAACTCGTGTGGGCTTTAAAAGGCG
65 GGAAAAGGCATCCTGCTCTTTGAGGACAGAAAGGTGCCACCAACTCATGTGGGCTTTAAAAGGCA
* * * * *
871622 TCCTGCTCTTTGAGGACTGAAAATTGCCTCCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTT
130 TCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTCGTGTGGGCTTTAAAAGGCGTCCTCCTCTT
*
871687 TGAGGACTAAATGGTG
195 TGAGGACTAAAGGGTG
** *
871703 AAAGGAGAGAGTGTCCTGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGATTTAAAAG
1 AAAGGAGAGAGCATCCTGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAG
* * * * *
871768 GAGAAGCCGTCCTACTCTTTGAGGACAG-AAGGTGCCACCAGCAT-ATGTGGGCTTTAAAAGAAA
66 GAAAAGGCATCCTGCTCTTTGAGGACAGAAAGGTGCCACCAAC-TCATGTGGGCTTT------AA
* ** *
871831 AAGGCATCCTGCTCTTTGAGTACT-AGACGGTGCCACCGACTCGTGTGGGCTTTAAAAGGCGTCC
124 AAGGCATCCTGCTCTTTGAGGACTGA-AAAGTGCCACCAACTCGTGTGGGCTTTAAAAGGCGTCC
871895 TCCTCTTTG-GAGACTAAAGGGTG
188 TCCTCTTTGAG-GACTAAAGGGTG
* *
871918 AAAGGAGAGAGCATCGTGCTCTTTGAGGACTAGAAAGTGCTACCAACTTGTGTGGGCTTTAAAAG
1 AAAGGAGAGAGCATCCTGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAG
* * *
871983 GAAAAGGCATCCCGCTTTTTGAGGACTGAAA
66 GAAAAGGCATCCTGCTCTTTGAGGACAGAAA
872014 AGTGAAAGGA
Statistics
Matches: 259, Mismatches: 40, Indels: 17
0.82 0.13 0.05
Matches are distributed among these distances:
209 50 0.19
210 50 0.19
214 2 0.01
215 155 0.60
216 2 0.01
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.25
Consensus pattern (210 bp):
AAAGGAGAGAGCATCCTGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAG
GAAAAGGCATCCTGCTCTTTGAGGACAGAAAGGTGCCACCAACTCATGTGGGCTTTAAAAGGCAT
CCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTCGTGTGGGCTTTAAAAGGCGTCCTCCTCTTT
GAGGACTAAAGGGTG
Found at i:873123 original size:61 final size:60
Alignment explanation
Indices: 873028--873376 Score: 338
Period size: 61 Copynumber: 5.9 Consensus size: 60
873018 AAGGAAGTGT
* * * * *
873028 GTCCTGC-CTTTGAGCATTGAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAGGC
1 GTCCTGCTCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTT-AAAAGAAAAGGC
* * * * *
873088 GTCCTGCCCTTTGAGGGCTGGAAGGGGCCAGCAACTTGTGCGGGCTTTGCAAAA-AGAAA-GC
1 GTCCTGCTCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTT--AAAAGA-AAAGGC
* * * * * * *
873149 ATCCTTCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAGGAGAAGGT
1 GTCCTGCTCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGC
* * * *
873209 GTCCTACTCTTTGAGGAC-GGAAGGTCCCACCAGCTTATGTGGGCTTTAAAAGAAAAAGGC
1 GTCCTGCTCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAG-AAAAGGC
* * * *
873269 CTCCTGCTTTTTGAGGACTGGAGGGTGCCACCAACTCGTGTGGGCTTT-----AAAAGGC
1 GTCCTGCTCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGC
* * *
873324 GTCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAG
1 GTCCTGCTCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAG
873377 GCGTCCTACT
Statistics
Matches: 231, Mismatches: 46, Indels: 24
0.77 0.15 0.08
Matches are distributed among these distances:
55 49 0.21
59 33 0.14
60 45 0.19
61 97 0.42
62 7 0.03
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.25
Consensus pattern (60 bp):
GTCCTGCTCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGC
Found at i:873297 original size:120 final size:120
Alignment explanation
Indices: 873029--873321 Score: 331
Period size: 120 Copynumber: 2.4 Consensus size: 120
873019 AGGAAGTGTG
* *
873029 TCCTGC-CTTTGAGCATTGAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAGGCGTCCT
1 TCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTCGTGTGGGCTTT-AAAAGAAAAGGCGTCCT
* * * * * *
873093 GCCCTTTGAGGGCTGGAAGGGGCCAGCAACTTGTGCGGGCTTTGCAAAAAGAAAGCA
65 ACCCTTTGAGGACTGGAAGGGCCCACCAACTTATGCGGGCTTT-CAAAAAAAAAGCA
* * * * *
873150 TCCTTCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAGGAGAAGGTGTCCTA
1 TCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTCGTGTGGGCTTTAAAAGAAAAGGCGTCCTA
* * * * *
873215 CTCTTTGAGGAC-GGAAGGTCCCACCAGCTTATGTGGGCTTT-AAAAGAAAAAGGCC
66 CCCTTTGAGGACTGGAAGGGCCCACCAACTTATGCGGGCTTTCAAAA-AAAAA-GCA
* * **
873270 TCCTGCTTTTTGAGGACTGGAGGGTGCCACCAACTCGTGTGGGCTTTAAAAG
1 TCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTCGTGTGGGCTTTAAAAG
873322 GCGTCCTGCT
Statistics
Matches: 144, Mismatches: 25, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
118 4 0.03
119 4 0.03
120 70 0.49
121 29 0.20
122 37 0.26
ACGTcount: A:0.25, C:0.22, G:0.29, T:0.25
Consensus pattern (120 bp):
TCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTCGTGTGGGCTTTAAAAGAAAAGGCGTCCTA
CCCTTTGAGGACTGGAAGGGCCCACCAACTTATGCGGGCTTTCAAAAAAAAAGCA
Found at i:873490 original size:61 final size:59
Alignment explanation
Indices: 873406--873647 Score: 185
Period size: 60 Copynumber: 4.1 Consensus size: 59
873396 CTAAATGGTG
* * * *
873406 AAAGGAGAGAGCATCCTGCTCTTTGAGGACTCGAAAGTGCCACCAACGTGTGTGGGTTTTA
1 AAAGGAGA-AGCGTCCTGCTCTTTGAGGACTAGAAGGTGCCACCAAC-TGTGTGGGCTTTA
* * ** * *
873467 AAAGGAGAAGCCGTCCAGCTCTTTGAGGA-TTGAAGGTGCCACCAGTTTATGCGGGCTTTA
1 AAAGGAGAAG-CGTCCTGCTCTTTGAGGACTAGAAGGTGCCACCA-ACTGTGTGGGCTTTA
* * *
873527 AAA-GAAAAGGGCGTCCTGCTTTTTGAGGACTAGACGGTGCCACCAACTCGTGTGGGCTTT-
1 AAAGGAGAA--GCGTCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACT-GTGTGGGCTTTA
* ** * *
873587 AAA--AG--GTGTCCTGCTCTTTGAGGACT-GACAAATGCCACAAACTTGTGTGGGCTTTG
1 AAAGGAGAAGCGTCCTGCTCTTTGAGGACTAGA-AGGTGCCACCAAC-TGTGTGGGCTTTA
873643 AAAGG
1 AAAGG
873648 CGTCCTGCTC
Statistics
Matches: 145, Mismatches: 25, Indels: 25
0.74 0.13 0.13
Matches are distributed among these distances:
54 2 0.01
55 39 0.27
56 4 0.03
59 5 0.03
60 48 0.33
61 47 0.32
ACGTcount: A:0.26, C:0.20, G:0.29, T:0.25
Consensus pattern (59 bp):
AAAGGAGAAGCGTCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTGTGTGGGCTTTA
Found at i:873607 original size:55 final size:56
Alignment explanation
Indices: 873531--873668 Score: 181
Period size: 55 Copynumber: 2.5 Consensus size: 56
873521 GCTTTAAAAG
* ** *
873531 AAAAGGGCGTCCTGCTTTTTGAGGACTAGAC-GGTGCCACCAACTCGTGTGGGCTTT
1 AAAA-GGCGTCCTGCTCTTTGAGGACTAGACAAATGCCACAAACTCGTGTGGGCTTT
* *
873587 AAAAGGTGTCCTGCTCTTTGAGGACT-GACAAATGCCACAAACTTGTGTGGGCTTT
1 AAAAGGCGTCCTGCTCTTTGAGGACTAGACAAATGCCACAAACTCGTGTGGGCTTT
* *
873642 GAAAGGCGTCCTGCTCTTTAAGGACTA
1 AAAAGGCGTCCTGCTCTTTGAGGACTA
873669 AAGGGTGAAA
Statistics
Matches: 71, Mismatches: 9, Indels: 4
0.85 0.11 0.05
Matches are distributed among these distances:
54 3 0.04
55 64 0.90
56 4 0.06
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.28
Consensus pattern (56 bp):
AAAAGGCGTCCTGCTCTTTGAGGACTAGACAAATGCCACAAACTCGTGTGGGCTTT
Found at i:873632 original size:270 final size:269
Alignment explanation
Indices: 873146--873766 Score: 960
Period size: 270 Copynumber: 2.3 Consensus size: 269
873136 GCAAAAAGAA
* *
873146 AGCATCCTTCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTT-AAAGGAGAAGGTG
1 AGCATCCTGCTCTTTGAGGACTG-AAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCG
*
873210 TCCTA-CTCTTTGAGGACGGAAGGTCCCACCAGCTTATGTGGGCTTTAAAAGAAAAAGGCCTCCT
65 TCC-AGCTCTTTGAGGACGGAAGGTCCCACCAGCTTATGCGGGCTTTAAAAGAAAAAGGCCTCCT
* *
873274 GCTTTTTGAGGACTGGAGGGTGCCACCAACTCGTGTGGGCTTTAAAAGGCGTCCTGCTCTTTGAG
129 GCTTTTTGAGGACTAGACGGTGCCACCAACTCGTGTGGGCTTTAAAAGGCGTCCTGCTCTTTGAG
* *
873339 GACTGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTACTCTTTAAGGACTAAATGG
194 GACTGAAAAGTGCCACAAACTTGTGTGGGCTTTGAAAGGCGTCCTACTCTTTAAGGACTAAAGGG
873404 TGAAAGGAGAG
259 TGAAAGGAGAG
* * *
873415 AGCATCCTGCTCTTTGAGGACTCGAAAGTGCCACCAACGTGTGTGGGTTTTAAAAGGAGAAGCCG
1 AGCATCCTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCG
** * * * *
873480 TCCAGCTCTTTGAGGATTGAAGGTGCCACCAGTTTATGCGGGCTTTAAAAGAAAAGGGCGTCCTG
65 TCCAGCTCTTTGAGGACGGAAGGTCCCACCAGCTTATGCGGGCTTTAAAAGAAAAAGGCCTCCTG
*
873545 CTTTTTGAGGACTAGACGGTGCCACCAACTCGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGAGG
130 CTTTTTGAGGACTAGACGGTGCCACCAACTCGTGTGGGCTTTAAAAGGCGTCCTGCTCTTTGAGG
*
873610 ACTGACAAA-TGCCACAAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTAAGGACTAAAGGG
195 ACTGA-AAAGTGCCACAAACTTGTGTGGGCTTTGAAAGGCGTCCTACTCTTTAAGGACTAAAGGG
873674 TGAAAGGAGAG
259 TGAAAGGAGAG
* * * *
873685 AGCGTCCTGCTCTTTGAGGACTAGAAAGTGCTACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCA
1 AGCATCCTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCG
* *
873750 TCCCGCTTTTTGAGGAC
65 TCCAGCTCTTTGAGGAC
873767 TAAAAGGTGA
Statistics
Matches: 319, Mismatches: 29, Indels: 7
0.90 0.08 0.02
Matches are distributed among these distances:
269 47 0.15
270 269 0.84
271 3 0.01
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.26
Consensus pattern (269 bp):
AGCATCCTGCTCTTTGAGGACTGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCGT
CCAGCTCTTTGAGGACGGAAGGTCCCACCAGCTTATGCGGGCTTTAAAAGAAAAAGGCCTCCTGC
TTTTTGAGGACTAGACGGTGCCACCAACTCGTGTGGGCTTTAAAAGGCGTCCTGCTCTTTGAGGA
CTGAAAAGTGCCACAAACTTGTGTGGGCTTTGAAAGGCGTCCTACTCTTTAAGGACTAAAGGGTG
AAAGGAGAG
Found at i:874633 original size:41 final size:39
Alignment explanation
Indices: 874549--874648 Score: 103
Period size: 41 Copynumber: 2.5 Consensus size: 39
874539 CTCCCAGTTT
* * *
874549 TTGAGGACAAAAGAAAAAAGAATGAAATAGGTCTTGCTCC
1 TTGAGGACAAAGGAAAAAAGAA-GAAAAAGGTCCTGCTCC
*
874589 TTGAGGACAAAGGAAAAGAAGAA-AATAAAGTGTCCTGCTTC
1 TTGAGGACAAAGGAAAA-AAGAAGAA-AAAG-GTCCTGCTCC
*
874630 TTGAGGGCAAAGTGAAAAA
1 TTGAGGACAAAG-GAAAAA
874649 GAGTACATCC
Statistics
Matches: 51, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
39 2 0.04
40 19 0.37
41 25 0.49
42 5 0.10
ACGTcount: A:0.45, C:0.11, G:0.25, T:0.19
Consensus pattern (39 bp):
TTGAGGACAAAGGAAAAAAGAAGAAAAAGGTCCTGCTCC
Found at i:874726 original size:42 final size:43
Alignment explanation
Indices: 874673--874801 Score: 138
Period size: 42 Copynumber: 3.0 Consensus size: 43
874663 TTTCGAGGAC
*
874673 AAAGGAAAAAGGGAAATGAAATATGTCCTGCTCTTTGAGGATA
1 AAAGGAAAAAGGGAAATGAAATGTGTCCTGCTCTTTGAGGATA
* * *
874716 AAAGG-AAAAGGAAAAT-AAAGTGCGTCCTGCTCTTTGAGGACA
1 AAAGGAAAAAGGGAAATGAAA-TGTGTCCTGCTCTTTGAGGATA
* * *
874758 AAAGAGAACAGAAGGG-AAGGAATTGTGTCCTGCTATTTGAGGAT
1 AAAG-GAA-A-AAGGGAAATGAAATGTGTCCTGCTCTTTGAGGAT
874802 TGAAAAATGC
Statistics
Matches: 70, Mismatches: 10, Indels: 10
0.78 0.11 0.11
Matches are distributed among these distances:
41 3 0.04
42 33 0.47
43 6 0.09
44 1 0.01
45 21 0.30
46 6 0.09
ACGTcount: A:0.40, C:0.11, G:0.28, T:0.22
Consensus pattern (43 bp):
AAAGGAAAAAGGGAAATGAAATGTGTCCTGCTCTTTGAGGATA
Found at i:874877 original size:61 final size:59
Alignment explanation
Indices: 874785--875159 Score: 299
Period size: 61 Copynumber: 6.4 Consensus size: 59
874775 AGGAATTGTG
* * ** * **
874785 TCCTGCTATTTGAGGATTGAAAAATGCCACCAACTCCTGTGGGCTTTAACAAGAAAAGGTG
1 TCCTGCTCTTTGAGGACTG-AAGGTGCCACCAACTTCTGTGGGCTTTAA-AAGAAAAGGCA
* * * * *
874846 TCCTGCCCTTCGAGGACTAGAAGGTGCCACCAACTTGTGCGGGCTTTACAAAAAGAAAGTG--
1 TCCTGCTCTTTGAGGACT-GAAGGTGCCACCAACTTCTGTGGGCTTTA-AAAGA-AAAG-GCA
* * * *
874907 TCCTGCTCTTTGAGGACTGAAAAGTTCCACCAACTTCTGTGGGCGTTAAAGGAAAAGGCA
1 TCCTGCTCTTTGAGGACTG-AAGGTGCCACCAACTTCTGTGGGCTTTAAAAGAAAAGGCA
* * * *
874967 TCCTTCTTTTTGAGGACTGAAGGTGCCACCAGCTTATGTGGGCTTTAAAAGAAAAAGGCA
1 TCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTCTGTGGGCTTTAAAAG-AAAAGGCA
* * *
875027 TCCTGCTCTTTGAGGACTAGAGGGTGCCACCAAC-TCGTGCGGGCTTT-----AAAAGGCC
1 TCCTGCTCTTTGAGGACT-GAAGGTGCCACCAACTTC-TGTGGGCTTTAAAAGAAAAGGCA
* * * * *
875082 TCCTACTCTTTGAGGACTGAAAAGTGGCACCAACTTGTGTGGGATTT----G-AAAGGCA
1 TCCTGCTCTTTGAGGACTG-AAGGTGCCACCAACTTCTGTGGGCTTTAAAAGAAAAGGCA
*
875137 TCCTGCTCTTTGAGGACTAAAGG
1 TCCTGCTCTTTGAGGACTGAAGG
875160 GTGAAAGGAG
Statistics
Matches: 256, Mismatches: 45, Indels: 33
0.77 0.13 0.10
Matches are distributed among these distances:
54 4 0.02
55 66 0.26
56 1 0.00
58 1 0.00
59 30 0.12
60 46 0.18
61 101 0.39
62 6 0.02
63 1 0.00
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.26
Consensus pattern (59 bp):
TCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTCTGTGGGCTTTAAAAGAAAAGGCA
Found at i:875036 original size:120 final size:122
Alignment explanation
Indices: 874782--875044 Score: 320
Period size: 120 Copynumber: 2.2 Consensus size: 122
874772 GGAAGGAATT
* * * **
874782 GTGTCCTGCTATTTGAGGATTGAAAAATGCCACCAACTCCTGTGGGCTTTAACAAGAAAAGGTGT
1 GTGTCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTCCTGTGGGCGTTAACAAGAAAAGGCAT
*
874847 CCTGCCCTTCGAGGACTAGAAGGTGCCACCAACTTGTGCGGGCTTTACAAAAAGAAA
66 CCTGCCCTTCGAGGACTAGAAGGTGCCACCAACTTATGCGGGCTTTACAAAAAGAAA
* * * *
874904 GTGTCCTGCTCTTTGAGGACTGAAAAGTTCCACCAACTTCTGTGGGCGTTAA-AGGAAAAGGCAT
1 GTGTCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTCCTGTGGGCGTTAACAAGAAAAGGCAT
* ** * * *
874968 CCTTCTTTTTGAGGACT-GAAGGTGCCACCAGCTTATGTGGGCTTTA-AAAGAA-AAA
66 CCTGCCCTTCGAGGACTAGAAGGTGCCACCAACTTATGCGGGCTTTACAAA-AAGAAA
875023 G-GCATCCTGCTCTTTGAGGACT
1 GTG--TCCTGCTCTTTGAGGACT
875045 AGAGGGTGCC
Statistics
Matches: 122, Mismatches: 16, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
118 1 0.01
119 7 0.06
120 46 0.38
121 22 0.18
122 46 0.38
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.26
Consensus pattern (122 bp):
GTGTCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTCCTGTGGGCGTTAACAAGAAAAGGCAT
CCTGCCCTTCGAGGACTAGAAGGTGCCACCAACTTATGCGGGCTTTACAAAAAGAAA
Found at i:875057 original size:120 final size:118
Alignment explanation
Indices: 874809--875162 Score: 313
Period size: 120 Copynumber: 3.0 Consensus size: 118
874799 GATTGAAAAA
* ** * * *
874809 TGCCACCAACTCCTGTGGGCTTTAACAAGAAAAGGTGTCCTGCCCTTCGAGGACTAGAAGGTGCC
1 TGCCACCAACTTCTGTGGGC-TT-A-AAGAAAAGGCATCCTACTCTTTGAGGACT-GAAGGTGCC
* **
874874 ACCAACTTGTGCGGGCTTTACAAA-AAGAAAGTG--TCCTGCTCTTTGAGGACT-GAAAAG
62 ACCAACTTGTGTGGGCTTTA-AAAGAA-AAAG-GCATCCTGCTCTTTGAGGACTAG-AGGG
* * *
874931 TTCCACCAACTTCTGTGGGCGTTAAAGGAAAAGGCATCCTTCTTTTTGAGGACTGAAGGTGCCAC
1 TGCCACCAACTTCTGTGGGC-TTAAA-GAAAAGGCATCCTACTCTTTGAGGACTGAAGGTGCCAC
* *
874996 CAGCTTATGTGGGCTTTAAAAGAAAAAGGCATCCTGCTCTTTGAGGACTAGAGGG
64 CAACTTGTGTGGGCTTTAAAAGAAAAAGGCATCCTGCTCTTTGAGGACTAGAGGG
* * * * *
875051 TGCCACCAAC-TCGTGCGGGCTT---TAAAAGGCCTCCTACTCTTTGAGGACTGAAAAGTGGCAC
1 TGCCACCAACTTC-TGTGGGCTTAAAGAAAAGGCATCCTACTCTTTGAGGACTG-AAGGTGCCAC
* *
875112 CAACTTGTGTGGGATTT----G--AAAGGCATCCTGCTCTTTGAGGACTAAAGGG
64 CAACTTGTGTGGGCTTTAAAAGAAAAAGGCATCCTGCTCTTTGAGGACTAGAGGG
875161 TG
1 TG
875163 AAAGGAGAGA
Statistics
Matches: 199, Mismatches: 26, Indels: 26
0.79 0.10 0.10
Matches are distributed among these distances:
110 32 0.16
112 1 0.01
115 24 0.12
116 22 0.11
118 1 0.01
119 11 0.06
120 65 0.33
121 23 0.12
122 20 0.10
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (118 bp):
TGCCACCAACTTCTGTGGGCTTAAAGAAAAGGCATCCTACTCTTTGAGGACTGAAGGTGCCACCA
ACTTGTGTGGGCTTTAAAAGAAAAAGGCATCCTGCTCTTTGAGGACTAGAGGG
Found at i:875091 original size:55 final size:55
Alignment explanation
Indices: 875019--875162 Score: 182
Period size: 55 Copynumber: 2.6 Consensus size: 55
875009 CTTTAAAAGA
*
875019 AAAAGGCATCCTGCTCTTTGAGGACTAGAGGGTGCCACCAACTCGTGCGGGCTTT
1 AAAAGGCATCCTGCTCTTTGAGGACTAGAGGGTGCCACCAACTCGTGCGGGATTT
* * ** * * *
875074 AAAAGGCCTCCTACTCTTTGAGGACT-GAAAAGTGGCACCAACTTGTGTGGGATTT
1 AAAAGGCATCCTGCTCTTTGAGGACTAG-AGGGTGCCACCAACTCGTGCGGGATTT
* *
875129 GAAAGGCATCCTGCTCTTTGAGGACTAAAGGGTG
1 AAAAGGCATCCTGCTCTTTGAGGACTAGAGGGTG
875163 AAAGGAGAGA
Statistics
Matches: 73, Mismatches: 14, Indels: 4
0.80 0.15 0.04
Matches are distributed among these distances:
54 1 0.01
55 72 0.99
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (55 bp):
AAAAGGCATCCTGCTCTTTGAGGACTAGAGGGTGCCACCAACTCGTGCGGGATTT
Found at i:876111 original size:41 final size:39
Alignment explanation
Indices: 876036--876122 Score: 104
Period size: 41 Copynumber: 2.2 Consensus size: 39
876026 GTCCAACTTT
*
876036 TTGAGGACAAAGGAAAAAAGAATTAAATAGGTCTTGCTCC
1 TTGAGGACAAAGGAAAAAAGAA-TAAAAAGGTCTTGCTCC
* *
876076 TTGAGGACAAAGGAAGAGAAGAA-AAGAAAGTGTCTTGCTTC
1 TTGAGGACAAAGGAA-AAAAGAATAA-AAAG-GTCTTGCTCC
876117 TTGAGG
1 TTGAGG
876123 GAAAGTGAAA
Statistics
Matches: 41, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
39 2 0.05
40 18 0.44
41 21 0.51
ACGTcount: A:0.40, C:0.10, G:0.28, T:0.22
Consensus pattern (39 bp):
TTGAGGACAAAGGAAAAAAGAATAAAAAGGTCTTGCTCC
Found at i:876283 original size:45 final size:42
Alignment explanation
Indices: 876189--876287 Score: 121
Period size: 42 Copynumber: 2.3 Consensus size: 42
876179 ACACGTACTG
*
876189 CTCTTTGAGGACAAAAGAGAAAGGAAAATAAAGTGCGTCCTG
1 CTCTTTGAGGACAAAAGAGAAAGGAAAATAAAGTGCGTCCTA
*
876231 CTCTTTGAGGACAAAAGAGAACA-GAAGGGAA-AGAAGTGTGTCCTA
1 CTCTTTGAGGACAAAAGAGAA-AGGAA---AATA-AAGTGCGTCCTA
876276 CTCTTTGAGGAC
1 CTCTTTGAGGAC
876288 TGAAAAGTGC
Statistics
Matches: 50, Mismatches: 2, Indels: 7
0.85 0.03 0.12
Matches are distributed among these distances:
42 24 0.48
43 1 0.02
44 1 0.02
45 24 0.48
ACGTcount: A:0.37, C:0.15, G:0.27, T:0.20
Consensus pattern (42 bp):
CTCTTTGAGGACAAAAGAGAAAGGAAAATAAAGTGCGTCCTA
Found at i:876376 original size:61 final size:60
Alignment explanation
Indices: 876270--876641 Score: 301
Period size: 61 Copynumber: 6.3 Consensus size: 60
876260 AAAGAAGTGT
* * * * *
876270 GTCCTACTCTTTGAGGACTGAAAAGTGCCATCAACTCGGGTGGGCTTTGAAAAGAAAAGGT
1 GTCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTT-AAAAGAAAAGGC
* * * * *
876331 GTCCCT-CTCTTTGAGGA-TAGGAAGGTGCCACCAACTTGTGCGGGCTGTGCAAAA-AGGAA-GC
1 GT-CCTGCTCTTTGAGGACT-GAAAAGTGCCACCAACTTGTGTGGGCT-T-TAAAAGA-AAAGGC
* * * * * * * *
876392 ATCCTACTTTTTGAGTATTGAAAAGTGCCACCAACTTGTCTGGGCTTTAAAAGGAGAGGGC
1 GTCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAA-GAAAAGGC
* ** * *
876453 GTCCTGCTCTTTGAGGACTG-AAGGTGCCACCAGTTTATGTGGGCTGTAAAAGAAAAAGGC
1 GTCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAG-AAAAGGC
* * *
876513 GTCCTGCTCTTTGAGCAC--AAGAGGGTGCCACCAACTCGTGTGGGCTTT-----AAAAGGC
1 GTCCTGCTCTTTGAGGACTGAA-A-AGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGC
876568 GTCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTT----G-AAAGGC
1 GTCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGC
876623 GTCCTGCTCTTTGAGGACT
1 GTCCTGCTCTTTGAGGACT
876642 AAAGTGTGAA
Statistics
Matches: 254, Mismatches: 40, Indels: 40
0.76 0.12 0.12
Matches are distributed among these distances:
55 72 0.28
56 1 0.00
57 2 0.01
59 6 0.02
60 55 0.22
61 107 0.42
62 11 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (60 bp):
GTCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGC
Found at i:876578 original size:55 final size:54
Alignment explanation
Indices: 876506--876637 Score: 194
Period size: 55 Copynumber: 2.4 Consensus size: 54
876496 CTGTAAAAGA
*
876506 AAAAGGCGTCCTGCTCTTTGAGCAC-AAGAGGGTGCCACCAACTCGTGTGGGCTTT
1 AAAAGGCGTCCTGCTCTTTGAGCACGAA-A-AGTGCCACCAACTCGTGTGGGCTTT
* *
876561 AAAAGGCGTCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTT
1 AAAAGGCGTCCTGCTCTTTGAGCAC-GAAAAGTGCCACCAACTCGTGTGGGCTTT
*
876616 GAAAGGCGTCCTGCTCTTTGAG
1 AAAAGGCGTCCTGCTCTTTGAG
876638 GACTAAAGTG
Statistics
Matches: 71, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
55 68 0.96
56 1 0.01
57 2 0.03
ACGTcount: A:0.22, C:0.23, G:0.29, T:0.26
Consensus pattern (54 bp):
AAAAGGCGTCCTGCTCTTTGAGCACGAAAAGTGCCACCAACTCGTGTGGGCTTT
Found at i:877851 original size:61 final size:59
Alignment explanation
Indices: 877760--878137 Score: 350
Period size: 61 Copynumber: 6.4 Consensus size: 59
877750 AAAGAAGTGT
* *
877760 GTCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTCGTGTTGGCTTTGAAAAGAGAAGGC
1 GTCCTGCTCTTTGAGGACTG-AAAGTGCCACCAACTCGTGTGGGCTTT-AAAAGAGAAGGC
* * * * * *
877821 GTCTTGCCCTTTGAGGACTGGAAGGAGCCACCAACTTC-TGCGGGCTTTGCAAAA-AGAAAGC
1 GTCCTGCTCTTTGAGGACT-GAAAGTGCCACCAAC-TCGTGTGGGCTTT--AAAAGAGAAGGC
* ** *
877882 ATCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTTTGTAGGCTTTAAAAGGAGAAGGC
1 GTCCTGCTCTTTGAGGACTG-AAAGTGCCACCAACTCGTGTGGGCTTTAAAA-GAGAAGGC
** * ** * * *
877943 GTCCTGCTCTTTGAGGACTGACGGTGCCACCAGCTTATGTTGGCTGTAAAAGAAAAAGGC
1 GTCCTGCTCTTTGAGGACTGAAAGTGCCACCAACTCGTGTGGGCTTTAAAAG-AGAAGGC
* **
878003 GTCCTGCTCTTTGAAGACTGGAGGGTGCCACCAACTCGTGTGGGCTTT---A-A-AAGGC
1 GTCCTGCTCTTTGAGGACT-GAAAGTGCCACCAACTCGTGTGGGCTTTAAAAGAGAAGGC
*
878058 GTCCTGCTCTTTGAGGACTGACAAGTGCCACCAACTTGTGTGGGCTTT----GA-AAGGC
1 GTCCTGCTCTTTGAGGACTGA-AAGTGCCACCAACTCGTGTGGGCTTTAAAAGAGAAGGC
878113 GTCCTGCTCTTTGAGGACT-AAAGTG
1 GTCCTGCTCTTTGAGGACTGAAAGTG
878138 TGAAAGGAGA
Statistics
Matches: 269, Mismatches: 37, Indels: 30
0.80 0.11 0.09
Matches are distributed among these distances:
53 5 0.02
54 3 0.01
55 71 0.26
56 1 0.00
58 1 0.00
59 5 0.02
60 51 0.19
61 125 0.46
62 7 0.03
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (59 bp):
GTCCTGCTCTTTGAGGACTGAAAGTGCCACCAACTCGTGTGGGCTTTAAAAGAGAAGGC
Found at i:878169 original size:94 final size:96
Alignment explanation
Indices: 878056--878246 Score: 262
Period size: 94 Copynumber: 2.0 Consensus size: 96
878046 GCTTTAAAAG
* * *
878056 GCGTCCTGCTCTTTGAGGACT-GACAAGTGCCACCAACTTGTGT-GGGCTT-TGAAAGGCGTCCT
1 GCGTCCTGCTCTTTGAGGACTAGA-AAGTGCCACCAACTTGTGTAGGGCTTAGGAAAGGCATCCC
**
878118 GCTCTTTGAGGACTAAAGTGTGAAAGGAGAGA
65 GCTCTTTGAGGACTAAAAAGTGAAAGGAGAGA
*
878150 GCGTCCTGCTCTTTGAGGACTAGAAAGTGCTACCAACTTGTGTAGGGCTTAAAAGGAAAGGCATC
1 GCGTCCTGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTAGGGCTT---AGGAAAGGCATC
*
878215 CCGCTTTTTGAGGACTAAAAAGTGAAAGGAGA
63 CCGCTCTTTGAGGACTAAAAAGTGAAAGGAGA
878247 AAGTTTAGAT
Statistics
Matches: 84, Mismatches: 7, Indels: 7
0.86 0.07 0.07
Matches are distributed among these distances:
94 39 0.46
95 8 0.10
99 37 0.44
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (96 bp):
GCGTCCTGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTAGGGCTTAGGAAAGGCATCCCG
CTCTTTGAGGACTAAAAAGTGAAAGGAGAGA
Found at i:879204 original size:119 final size:117
Alignment explanation
Indices: 879003--879224 Score: 260
Period size: 119 Copynumber: 1.9 Consensus size: 117
878993 GGAGGGGGTG
* * *
879003 TCCCACTTTTTGAGGACAAAGGAAAAAAAATGAAATAGGTCTTGCTCATTGAGGACAAAGGAAAA
1 TCCCACTTTTTGAGGACAAAGGAAAAAAAATGAAATACGTCCTGATCATTGAGGACAAAGGAAAA
*
879068 GAAGAAAAGGAAAGTGTCTTGCT-TCTTGAGGA-AAAAGTGAAAAAAAGTACA
66 GAAGAAAAGGAAAGTGTCCTGCTCT-TTGAGGACAAAAGTGAAAAAAAGTACA
879119 TCCCA-TTTTTCGAGGACAAAGGAAAAAGGGAAATGAAATACGTCCTGATC-TCTGAGGACGAAA
1 TCCCACTTTTT-GAGGACAAAGGAAAAA---AAATGAAATACGTCCTGATCAT-TGAGGAC-AAA
* *
879182 -GAAAA-AGGAAAA-TAAAGTGTGTCCTGCTCTTTGAGGACAAAAG
60 GGAAAAGAAGAAAAGGAAA--GTGTCCTGCTCTTTGAGGACAAAAG
879225 AGAACAGAAA
Statistics
Matches: 90, Mismatches: 6, Indels: 16
0.80 0.05 0.14
Matches are distributed among these distances:
115 5 0.06
116 21 0.23
117 3 0.03
118 7 0.08
119 45 0.50
120 9 0.10
ACGTcount: A:0.42, C:0.13, G:0.24, T:0.21
Consensus pattern (117 bp):
TCCCACTTTTTGAGGACAAAGGAAAAAAAATGAAATACGTCCTGATCATTGAGGACAAAGGAAAA
GAAGAAAAGGAAAGTGTCCTGCTCTTTGAGGACAAAAGTGAAAAAAAGTACA
Found at i:879225 original size:42 final size:42
Alignment explanation
Indices: 879130--879263 Score: 128
Period size: 42 Copynumber: 3.1 Consensus size: 42
879120 CCCATTTTTC
* * ** * *
879130 GAGGACAAAGGAAAAAGGGAAATGAAA-TACGTCCTGATCTCT
1 GAGGACAAAAGAAAAAGGAAAAT-AAAGTGTGTCCTGCTCTTT
*
879172 GAGGACGAAAGAAAAAGGAAAATAAAGTGTGTCCTGCTCTTT
1 GAGGACAAAAGAAAAAGGAAAATAAAGTGTGTCCTGCTCTTT
* *
879214 GAGGACAAAAGAGAACA-GAAAGGAAAGAAGTGTGTCCTGCTCTTT
1 GAGGACAAAAGA-AAAAGGAAA--ATA-AAGTGTGTCCTGCTCTTT
879259 GAGGA
1 GAGGA
879264 TTGAAAAGTG
Statistics
Matches: 77, Mismatches: 10, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
41 3 0.04
42 46 0.60
43 3 0.04
44 2 0.03
45 23 0.30
ACGTcount: A:0.41, C:0.13, G:0.28, T:0.18
Consensus pattern (42 bp):
GAGGACAAAAGAAAAAGGAAAATAAAGTGTGTCCTGCTCTTT
Found at i:879356 original size:61 final size:60
Alignment explanation
Indices: 879247--879617 Score: 311
Period size: 61 Copynumber: 6.3 Consensus size: 60
879237 AAAGAAGTGT
** * * * * * *
879247 GTCCTGCTCTTTGAGGATTGAAAAGTGCCACGAACTCGTGTGGGCTTTGAAAAGAAAATGT
1 GTCCTGCTCTTTGAGGACAGGAAGGTGCCACCAACTTGTGTGGGCTTT-AAAAGAAAAGGC
* * *
879308 GTCCTGCCCTTTGAGGACAGGAAGGTGCCACCAACTTGTGCGGACTTTGCAAAA-AGAAA-GC
1 GTCCTGCTCTTTGAGGACAGGAAGGTGCCACCAACTTGTGTGGGCTTT--AAAAGA-AAAGGC
* * * * * * * *
879369 ATCCTACTCTTTAAGGACTGAAAAGTGCCACCAACTTGTCTGGGCTTTAAAAGGAGAAGGC
1 GTCCTGCTCTTTGAGGACAGGAAGGTGCCACCAACTTGTGTGGGCTTTAAAA-GAAAAGGC
* * * * *
879430 GTCCTGCTCTTTGAGGAC-TGAAGGTGCCACCAGCTTATGTGGGCTGTAAAGGAAAAAGGC
1 GTCCTGCTCTTTGAGGACAGGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAG-AAAAGGC
* *
879490 GTCCTGCTCTTTGAGGACAGGAGGGTGCCACCAACTCGTGTGGGCTTT-----AAAAGGC
1 GTCCTGCTCTTTGAGGACAGGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGC
* * * *
879545 GTCCCGCTCTTTGAGGACTA-AAAAGTGCCACTAACTTGTGTGGGCTTT----G-AAAGGC
1 GTCCTGCTCTTTGAGGAC-AGGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGC
879600 GTCCTGCTCTTTGAGGAC
1 GTCCTGCTCTTTGAGGAC
879618 TAAAGTGTGA
Statistics
Matches: 254, Mismatches: 47, Indels: 24
0.78 0.14 0.07
Matches are distributed among these distances:
55 70 0.28
56 1 0.00
59 5 0.02
60 51 0.20
61 120 0.47
62 7 0.03
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (60 bp):
GTCCTGCTCTTTGAGGACAGGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGC
Found at i:880795 original size:13 final size:13
Alignment explanation
Indices: 880777--880801 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
880767 CATAAAATGT
880777 TGTATCGATACAA
1 TGTATCGATACAA
880790 TGTATCGATACA
1 TGTATCGATACA
880802 TATTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:880799 original size:33 final size:33
Alignment explanation
Indices: 880757--880826 Score: 104
Period size: 33 Copynumber: 2.1 Consensus size: 33
880747 TTCAACGATT
880757 TGTATCGATACATAAAATGTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
*** *
880790 TGTATCGATACATATTTTTTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
880823 TGTA
1 TGTA
880827 AGCTACTGCC
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.34, C:0.11, G:0.14, T:0.40
Consensus pattern (33 bp):
TGTATCGATACATAAAATGTTGTATCGATACAA
Found at i:880885 original size:13 final size:13
Alignment explanation
Indices: 880867--880891 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
880857 ATTACTCACA
880867 TGTATCGATACAT
1 TGTATCGATACAT
880880 TGTATCGATACA
1 TGTATCGATACA
880892 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:881028 original size:52 final size:52
Alignment explanation
Indices: 880900--881020 Score: 242
Period size: 52 Copynumber: 2.3 Consensus size: 52
880890 CACTGATCTT
880900 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACATTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACATTATAAAA
880952 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACATTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACATTATAAAA
881004 TGTATCGATACATGCAG
1 TGTATCGATACATGCAG
881021 ATAAATTTTC
Statistics
Matches: 69, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
52 69 1.00
ACGTcount: A:0.36, C:0.17, G:0.18, T:0.29
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACATTATAAAA
Found at i:887247 original size:92 final size:92
Alignment explanation
Indices: 887110--887738 Score: 1037
Period size: 92 Copynumber: 6.8 Consensus size: 92
887100 AGTGTTGAGG
* * * *
887110 CAAGGCCAGCGACATCGGGCTTAAAAGATAAGGGTGCCAATATGCTGATTCAAGGCCAGCGATAT
1 CAAGGCCAGCTACATTGGACTT-AAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATAT
887175 TGGACTTAAAGGTGCCAATGTGCTGATT
65 TGGACTTAAAGGTGCCAATGTGCTGATT
*
887203 CAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCAATATT
1 CAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATT
*
887268 GGACTTAAAAGTGCCAATGTGCTGATT
66 GGACTTAAAGGTGCCAATGTGCTGATT
*
887295 CAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAACGATATT
1 CAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATT
* * *
887360 GGACTTAAAAGTGTCGATGTGCTGATT
66 GGACTTAAAGGTGCCAATGTGCTGATT
887387 CAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATT
1 CAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATT
**
887452 GGACTTGGAGGTGCCAATGTGCTGATT
66 GGACTTAAAGGTGCCAATGTGCTGATT
* * *
887479 CAAGGCCAGCTACATTGGACTTAAACACAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATT
1 CAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATT
*
887544 GGACTTAGAA-GTGCCAATGTGCTCATT
66 GGACTTA-AAGGTGCCAATGTGCTGATT
* *
887571 CAAGGCCAGCTACATTGGACTTAAAGACAAAGGTGCCAATATGCTGATTCAAGGCCAACGATATT
1 CAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATT
887636 GGACTTAGAA-GTGCCAATGTGCTGATT
66 GGACTTA-AAGGTGCCAATGTGCTGATT
* *
887663 CAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATT
1 CAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATT
887728 GGACTTAAAGG
66 GGACTTAAAGG
887739 ATGATGCCAC
Statistics
Matches: 504, Mismatches: 30, Indels: 5
0.94 0.06 0.01
Matches are distributed among these distances:
91 2 0.00
92 482 0.96
93 20 0.04
ACGTcount: A:0.32, C:0.19, G:0.25, T:0.24
Consensus pattern (92 bp):
CAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATT
GGACTTAAAGGTGCCAATGTGCTGATT
Found at i:887788 original size:33 final size:32
Alignment explanation
Indices: 887743--887966 Score: 265
Period size: 32 Copynumber: 6.9 Consensus size: 32
887733 TAAAGGATGA
* *
887743 TGCCACCAACTTGTGTGGGCTTTTGAAGAAGGT
1 TGCCACCGACTTGTGTGGGCTTTAG-AGAAGGT
**
887776 TGCCACCGACTTGTGTGGGCTTTAGAGGGGGT
1 TGCCACCGACTTGTGTGGGCTTTAGAGAAGGT
*
887808 TGCCACCAACTTGTGTGGGCTTTAGAGAAGGGT
1 TGCCACCGACTTGTGTGGGCTTTAGAGAA-GGT
* *
887841 TGCCACCGACTTATGTGGGCTTTAGAAAAAGGT
1 TGCCACCGACTTGTGTGGGCTTTAG-AGAAGGT
* *
887874 TACCACCGACTTGTGTGGGCTTTAGAG-GGGAT
1 TGCCACCGACTTGTGTGGGCTTTAGAGAAGG-T
* * *
887906 TGCCACCAACTTATGTGGGCTTTATA-AAGGGT
1 TGCCACCGACTTGTGTGGGCTTTAGAGAA-GGT
*
887938 TGCCACCGACTTGTGTAGGCTTT-GAGAAG
1 TGCCACCGACTTGTGTGGGCTTTAGAGAAG
887967 TGTGAAAGAT
Statistics
Matches: 162, Mismatches: 23, Indels: 14
0.81 0.12 0.07
Matches are distributed among these distances:
31 4 0.02
32 78 0.48
33 77 0.48
34 3 0.02
ACGTcount: A:0.21, C:0.19, G:0.32, T:0.29
Consensus pattern (32 bp):
TGCCACCGACTTGTGTGGGCTTTAGAGAAGGT
Found at i:887847 original size:65 final size:65
Alignment explanation
Indices: 887743--887966 Score: 294
Period size: 65 Copynumber: 3.5 Consensus size: 65
887733 TAAAGGATGA
* * **
887743 TGCCACCAACTTGTGTGGGCTTTTGAAGAA-GGTTGCCACCGACTTGTGTGGGCTTTAGAGGGGG
1 TGCCACCAACTTGTGTGGGCTTTAG-AGAAGGGTTGCCACCGACTTATGTGGGCTTTAGAAAGGG
887807 T
65 T
*
887808 TGCCACCAACTTGTGTGGGCTTTAGAGAAGGGTTGCCACCGACTTATGTGGGCTTTAGAAAAAGG
1 TGCCACCAACTTGTGTGGGCTTTAGAGAAGGGTTGCCACCGACTTATGTGGGCTTTAG-AAAGGG
887873 T
65 T
* * * *
887874 TACCACCGACTTGTGTGGGCTTTAGAG--GGGATTGCCACCAACTTATGTGGGCTTTATAAAGGG
1 TGCCACCAACTTGTGTGGGCTTTAGAGAAGGG-TTGCCACCGACTTATGTGGGCTTTAGAAAGGG
887937 T
65 T
* *
887938 TGCCACCGACTTGTGTAGGCTTT-GAGAAG
1 TGCCACCAACTTGTGTGGGCTTTAGAGAAG
887967 TGTGAAAGAT
Statistics
Matches: 142, Mismatches: 12, Indels: 10
0.87 0.07 0.06
Matches are distributed among these distances:
63 3 0.02
64 34 0.24
65 76 0.54
66 29 0.20
ACGTcount: A:0.21, C:0.19, G:0.32, T:0.29
Consensus pattern (65 bp):
TGCCACCAACTTGTGTGGGCTTTAGAGAAGGGTTGCCACCGACTTATGTGGGCTTTAGAAAGGGT
Found at i:887912 original size:98 final size:97
Alignment explanation
Indices: 887743--887965 Score: 347
Period size: 98 Copynumber: 2.3 Consensus size: 97
887733 TAAAGGATGA
* * * * *
887743 TGCCACCAACTTGTGTGGGCTTTTGAAGAAGGTTGCCACCGACTTGTGTGGGCTTTAGAGGGGGT
1 TGCCACCGACTTGTGTGGGCTTTAGAAAAAGGTTACCACCGACTTGTGTGGGCTTTAGAGGGGAT
*
887808 TGCCACCAACTTGTGTGGGCTTTAGAGAAGGGT
66 TGCCACCAACTTATGTGGGCTTTAGA-AAGGGT
*
887841 TGCCACCGACTTATGTGGGCTTTAGAAAAAGGTTACCACCGACTTGTGTGGGCTTTAGAGGGGAT
1 TGCCACCGACTTGTGTGGGCTTTAGAAAAAGGTTACCACCGACTTGTGTGGGCTTTAGAGGGGAT
*
887906 TGCCACCAACTTATGTGGGCTTTATAAAGGGT
66 TGCCACCAACTTATGTGGGCTTTAGAAAGGGT
*
887938 TGCCACCGACTTGTGTAGGCTTTGAGAA
1 TGCCACCGACTTGTGTGGGCTTT-AGAA
887966 GTGTGAAAGA
Statistics
Matches: 114, Mismatches: 10, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
97 27 0.24
98 87 0.76
ACGTcount: A:0.21, C:0.19, G:0.31, T:0.29
Consensus pattern (97 bp):
TGCCACCGACTTGTGTGGGCTTTAGAAAAAGGTTACCACCGACTTGTGTGGGCTTTAGAGGGGAT
TGCCACCAACTTATGTGGGCTTTAGAAAGGGT
Found at i:888080 original size:100 final size:99
Alignment explanation
Indices: 887988--888479 Score: 477
Period size: 100 Copynumber: 5.1 Consensus size: 99
887978 CCATGAAGTT
* * *
887988 GTGGACTGAAAAGGAACAAGGTACCACGAAGTTGTGGACTTTAAAAGGGAAAAAGAGTGCCACGG
1 GTGGACTTAAAAGGAACAAGGTGCCACGGAGTTGTGGAC-TTAAAAGGGAAAAAGAGTGCCACGG
888053 AGTTGTGGGCTTTGAAAAAAAGGTGCCACGGAGTC
65 AGTTGTGGGCTTTGAAAAAAAGGTGCCACGGAGTC
* * *
888088 GTGGACTTAAAAGGACCAAGGTGCCACGGGGTTGTGGACTTTAAAAGGGGAAAAGAGTGCCACGG
1 GTGGACTTAAAAGGAACAAGGTGCCACGGAGTTGTGGAC-TTAAAAGGGAAAAAGAGTGCCACGG
* *
888153 AGTTGTGGGCTTTGAAAAGAAGGTGCCATGGAGTC
65 AGTTGTGGGCTTTGAAAAAAAGGTGCCACGGAGTC
* * ** *
888188 GTGGACTTAAAA-AAAGAAGGTGCCACGGAGTTGTGGACTTAGGA-GGAAAAAGAGTGCCATGGA
1 GTGGACTTAAAAGGAACAAGGTGCCACGGAGTTGTGGACTTAAAAGGGAAAAAGAGTGCCACGGA
* *
888251 GTTGTGGGC-TT---AAAAGGGTGCCACGGAGTT
66 GTTGTGGGCTTTGAAAAAAAGGTGCCACGGAGTC
* * * *
888281 GGGGACTTAGAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTAAAA--G-----G-GTGCCACGG
1 GTGGACTTAAAAGGAACAAG-GTGCCACGGAGTTGTGGACTTAAAAGGGAAAAAGAGTGCCACGG
* * *
888338 AGTTGTGGACTTAGAAGGAAAAAGAGTGCCACGGAGTT
65 AGTTGTGGGCTTTGAA--AAAAAG-GTGCCACGGAGTC
* * * * *
888376 GTGGGCTTAAAATGGAA-AAGGTGCCACGGAGTCGTGGACTT--TA-GGACAAA-A-TGCCACTG
1 GTGGACTTAAAA-GGAACAAGGTGCCACGGAGTTGTGGACTTAAAAGGGAAAAAGAGTGCCACGG
* * *
888435 AATCGTGGGCTTTGACAAGGAAAAGGTGCCAC-AAGTC
65 AGTTGTGGGCTTTGA-AA--AAAAGGTGCCACGGAGTC
888472 GTGGACTT
1 GTGGACTT
888480 TAGGACAAAA
Statistics
Matches: 327, Mismatches: 45, Indels: 44
0.79 0.11 0.11
Matches are distributed among these distances:
88 17 0.05
89 2 0.01
92 1 0.00
93 26 0.08
94 30 0.09
95 47 0.14
96 17 0.05
97 51 0.16
98 10 0.03
99 22 0.07
100 104 0.32
ACGTcount: A:0.31, C:0.14, G:0.35, T:0.20
Consensus pattern (99 bp):
GTGGACTTAAAAGGAACAAGGTGCCACGGAGTTGTGGACTTAAAAGGGAAAAAGAGTGCCACGGA
GTTGTGGGCTTTGAAAAAAAGGTGCCACGGAGTC
Found at i:888252 original size:34 final size:34
Alignment explanation
Indices: 887971--888416 Score: 372
Period size: 34 Copynumber: 13.8 Consensus size: 34
887961 GAGAAGTGTG
* * *
887971 AAAGA-TGCCATGAAGTTGTGGACTGAAAAGGAA
1 AAAGAGTGCCACGGAGTTGTGGACTTAAAAGGAA
* * *
888004 CAAG-GTACCACGAAGTTGTGGACTTTAAAAGGGAA
1 AAAGAGTGCCACGGAGTTGTGGAC-TTAAAA-GGAA
* **
888039 AAAGAGTGCCACGGAGTTGTGGGCTTTGAA--AA
1 AAAGAGTGCCACGGAGTTGTGGACTTAAAAGGAA
* *
888071 AAAG-GTGCCACGGAGTCGTGGACTTAAAAGGAC
1 AAAGAGTGCCACGGAGTTGTGGACTTAAAAGGAA
* * *
888104 CAAG-GTGCCACGGGGTTGTGGACTTTAAAAGGGGA
1 AAAGAGTGCCACGGAGTTGTGGAC-TTAAAA-GGAA
* **
888139 AAAGAGTGCCACGGAGTTGTGGGCTTTGAA--AA
1 AAAGAGTGCCACGGAGTTGTGGACTTAAAAGGAA
* * *
888171 GAAG-GTGCCATGGAGTCGTGGACTTAAAA--AA
1 AAAGAGTGCCACGGAGTTGTGGACTTAAAAGGAA
**
888202 AGAAG-GTGCCACGGAGTTGTGGACTTAGGAGGAA
1 A-AAGAGTGCCACGGAGTTGTGGACTTAAAAGGAA
* *
888236 AAAGAGTGCCATGGAGTTGTGGGCTTAAAA-G--
1 AAAGAGTGCCACGGAGTTGTGGACTTAAAAGGAA
* *
888267 ---G-GTGCCACGGAGTTGGGGACTTAGAAGGAA
1 AAAGAGTGCCACGGAGTTGTGGACTTAAAAGGAA
*
888297 AAAGAGTGCCACGGAGTTGTGGGCTTAAAA-G--
1 AAAGAGTGCCACGGAGTTGTGGACTTAAAAGGAA
*
888328 ---G-GTGCCACGGAGTTGTGGACTTAGAAGGAA
1 AAAGAGTGCCACGGAGTTGTGGACTTAAAAGGAA
*
888358 AAAGAGTGCCACGGAGTTGTGGGCTTAAAATGG-A
1 AAAGAGTGCCACGGAGTTGTGGACTTAAAA-GGAA
*
888392 AAAG-GTGCCACGGAGTCGTGGACTT
1 AAAGAGTGCCACGGAGTTGTGGACTT
888417 TAGGACAAAA
Statistics
Matches: 331, Mismatches: 54, Indels: 56
0.75 0.12 0.13
Matches are distributed among these distances:
27 44 0.13
28 4 0.01
31 43 0.13
32 34 0.10
33 66 0.20
34 85 0.26
35 22 0.07
36 33 0.10
ACGTcount: A:0.32, C:0.13, G:0.36, T:0.20
Consensus pattern (34 bp):
AAAGAGTGCCACGGAGTTGTGGACTTAAAAGGAA
Found at i:888265 original size:27 final size:27
Alignment explanation
Indices: 888235--888387 Score: 128
Period size: 27 Copynumber: 5.1 Consensus size: 27
888225 CTTAGGAGGA
*
888235 AAAAGAGTGCCATGGAGTTGTGGGCTT
1 AAAAGAGTGCCACGGAGTTGTGGGCTT
*
888262 AAAAGGGTGCCACGGAGTTG-GGGACTT
1 AAAAGAGTGCCACGGAGTTGTGGG-CTT
888289 AGAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTT
1 -------AAAAGAGTGCCACGGAGTTGTGGGCTT
* *
888323 AAAAGGGTGCCACGGAGTTGTGGACTT
1 AAAAGAGTGCCACGGAGTTGTGGGCTT
888350 AGAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTT
1 -------AAAAGAGTGCCACGGAGTTGTGGGCTT
888384 AAAA
1 AAAA
888388 TGGAAAAGGT
Statistics
Matches: 103, Mismatches: 7, Indels: 32
0.73 0.05 0.23
Matches are distributed among these distances:
26 3 0.03
27 50 0.49
34 47 0.46
35 3 0.03
ACGTcount: A:0.31, C:0.12, G:0.37, T:0.20
Consensus pattern (27 bp):
AAAAGAGTGCCACGGAGTTGTGGGCTT
Found at i:888287 original size:61 final size:61
Alignment explanation
Indices: 888138--888387 Score: 328
Period size: 61 Copynumber: 4.1 Consensus size: 61
888128 TTAAAAGGGG
* * * * * *
888138 AAAAGAGTGCCACGGAGTTGTGGG-CTTTGAA--AAGAAG-GTGCCATGGAGTCGTGGACTT
1 AAAAGGGTGCCACGGAGTTG-GGGACTTAGAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTT
* * *
888196 AAAAAAAGAAGGTGCCACGGAGTTGTGGACTTAGGAGGAAAAAGAGTGCCATGGAGTTGTGGGCT
1 ---AAAAG--GGTGCCACGGAGTTGGGGACTTAGAAGGAAAAAGAGTGCCACGGAGTTGTGGGCT
888261 T
61 T
888262 AAAAGGGTGCCACGGAGTTGGGGACTTAGAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTT
1 AAAAGGGTGCCACGGAGTTGGGGACTTAGAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTT
*
888323 AAAAGGGTGCCACGGAGTTGTGGACTTAGAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTT
1 AAAAGGGTGCCACGGAGTTGGGGACTTAGAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTT
888384 AAAA
1 AAAA
888388 TGGAAAAGGT
Statistics
Matches: 172, Mismatches: 11, Indels: 12
0.88 0.06 0.06
Matches are distributed among these distances:
61 122 0.71
62 2 0.01
63 24 0.14
65 5 0.03
66 19 0.11
ACGTcount: A:0.31, C:0.12, G:0.37, T:0.20
Consensus pattern (61 bp):
AAAAGGGTGCCACGGAGTTGGGGACTTAGAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTT
Found at i:888441 original size:30 final size:30
Alignment explanation
Indices: 888397--888542 Score: 109
Period size: 30 Copynumber: 4.7 Consensus size: 30
888387 ATGGAAAAGG
* *
888397 TGCCACGGAGTCGTGGACTTTAGGACAAAA
1 TGCCACTGAATCGTGGACTTTAGGACAAAA
* *
888427 TGCCACTGAATCGTGGGCTTTGACAAGGA-AAAGG
1 TGCCACTGAATCGTGGACTTT----AGGACAAA-A
888461 TGCCAC--AAGTCGTGGACTTTAGGACAAAA
1 TGCCACTGAA-TCGTGGACTTTAGGACAAAA
* * * * * *
888490 TGCCACTGATTCGTGGGCTTTGAGAAGAGAT
1 TGCCACTGAATCGTGGACTTT-AGGACAAAA
*
888521 TGCCACTGAGTCGTGGACTTTA
1 TGCCACTGAATCGTGGACTTTA
888543 AGAAGGTATT
Statistics
Matches: 92, Mismatches: 14, Indels: 20
0.73 0.11 0.16
Matches are distributed among these distances:
29 10 0.11
30 32 0.35
31 25 0.27
32 2 0.02
33 13 0.14
34 10 0.11
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.24
Consensus pattern (30 bp):
TGCCACTGAATCGTGGACTTTAGGACAAAA
Found at i:888472 original size:63 final size:64
Alignment explanation
Indices: 888389--888512 Score: 223
Period size: 63 Copynumber: 2.0 Consensus size: 64
888379 GGCTTAAAAT
*
888389 GGAAAAGGTGCCACGGAGTCGTGGACTTTAGGACAAAATGCCACTGAATCGTGGGCTTTGACAA
1 GGAAAAGGTGCCACGAAGTCGTGGACTTTAGGACAAAATGCCACTGAATCGTGGGCTTTGACAA
*
888453 GGAAAAGGTGCCAC-AAGTCGTGGACTTTAGGACAAAATGCCACTGATTCGTGGGCTTTGA
1 GGAAAAGGTGCCACGAAGTCGTGGACTTTAGGACAAAATGCCACTGAATCGTGGGCTTTGA
888513 GAAGAGATTG
Statistics
Matches: 58, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
63 44 0.76
64 14 0.24
ACGTcount: A:0.29, C:0.19, G:0.31, T:0.22
Consensus pattern (64 bp):
GGAAAAGGTGCCACGAAGTCGTGGACTTTAGGACAAAATGCCACTGAATCGTGGGCTTTGACAA
Found at i:889616 original size:81 final size:79
Alignment explanation
Indices: 889478--889659 Score: 294
Period size: 81 Copynumber: 2.3 Consensus size: 79
889468 TGAAAAGGGG
* *
889478 TTTTTCCTCTTTTTTTTTTGTGAAGATTAGGTGAGTCTCGAAACTTGTGTCTCACCGAGATTTTT
1 TTTTT-CTCTTTTTTTTTTGTGAAGATTAGGTGAGCCTCGAAACTTGTGTCTCACCGAGATTTTC
889543 TGTTTTGCTTTTTTTC
65 TGTTTTG-TTTTTTTC
889559 TCTTCTT-TCTTTTTTTTTTGTGAAGATTAGGTGAGCCTCGAAACTTGTGTCTCACCGAGATTTT
1 T-TT-TTCTCTTTTTTTTTTGTGAAGATTAGGTGAGCCTCGAAACTTGTGTCTCACCGAGATTTT
*
889623 CTGTTTTGTTTTTTTG
64 CTGTTTTGTTTTTTTC
889639 TTTTTCTCTTTTTTTTTTGTG
1 TTTTTCTCTTTTTTTTTTGTG
889660 TTTGGAAAAG
Statistics
Matches: 95, Mismatches: 3, Indels: 8
0.90 0.03 0.08
Matches are distributed among these distances:
78 2 0.02
79 17 0.18
80 8 0.08
81 64 0.67
82 2 0.02
83 2 0.02
ACGTcount: A:0.12, C:0.14, G:0.17, T:0.57
Consensus pattern (79 bp):
TTTTTCTCTTTTTTTTTTGTGAAGATTAGGTGAGCCTCGAAACTTGTGTCTCACCGAGATTTTCT
GTTTTGTTTTTTTC
Done.