Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold30
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2650045
ACGTcount: A:0.30, C:0.17, G:0.18, T:0.30
Warning! 144233 characters in sequence are not A, C, G, or T
File 7 of 17
Found at i:889644 original size:21 final size:21
Alignment explanation
Indices: 889619--889662 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
889609 CTCACCGAGA
*
889619 TTTTCTGTTTTGTTTTTT-TGT
1 TTTTCTCTTTT-TTTTTTGTGT
889640 TTTTCTCTTTTTTTTTTGTGT
1 TTTTCTCTTTTTTTTTTGTGT
889661 TT
1 TT
889663 GGAAAAGAAC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 6 0.29
21 15 0.71
ACGTcount: A:0.00, C:0.07, G:0.11, T:0.82
Consensus pattern (21 bp):
TTTTCTCTTTTTTTTTTGTGT
Found at i:892206 original size:13 final size:13
Alignment explanation
Indices: 892188--892242 Score: 56
Period size: 13 Copynumber: 3.8 Consensus size: 13
892178 CAACGATTTT
892188 TATCGATACAATG
1 TATCGATACAATG
892201 TATCGATACATAAGTGTTG
1 TATCGATAC--AA----TG
892220 TATCGATACAATG
1 TATCGATACAATG
892233 TATCGATACA
1 TATCGATACA
892243 TAAGTTTTGT
Statistics
Matches: 36, Mismatches: 0, Indels: 12
0.75 0.00 0.25
Matches are distributed among these distances:
13 21 0.58
15 2 0.06
17 2 0.06
19 11 0.31
ACGTcount: A:0.36, C:0.15, G:0.16, T:0.33
Consensus pattern (13 bp):
TATCGATACAATG
Found at i:892223 original size:19 final size:18
Alignment explanation
Indices: 892199--892261 Score: 73
Period size: 19 Copynumber: 3.7 Consensus size: 18
892189 ATCGATACAA
892199 TGTATCGATACATAAGTGT
1 TGTATCGATACATAAGT-T
892218 TGTATCGATAC--AA---
1 TGTATCGATACATAAGTT
892231 TGTATCGATACATAAGTTT
1 TGTATCGATACATAAG-TT
892250 TGTATCGATACA
1 TGTATCGATACA
892262 ATGTAAGCTA
Statistics
Matches: 38, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
13 11 0.29
15 2 0.05
17 2 0.05
19 23 0.61
ACGTcount: A:0.33, C:0.13, G:0.17, T:0.37
Consensus pattern (18 bp):
TGTATCGATACATAAGTT
Found at i:892229 original size:32 final size:32
Alignment explanation
Indices: 892188--892266 Score: 149
Period size: 32 Copynumber: 2.5 Consensus size: 32
892178 CAACGATTTT
892188 TATCGATACAATGTATCGATACATAAGTGTTG
1 TATCGATACAATGTATCGATACATAAGTGTTG
*
892220 TATCGATACAATGTATCGATACATAAGTTTTG
1 TATCGATACAATGTATCGATACATAAGTGTTG
892252 TATCGATACAATGTA
1 TATCGATACAATGTA
892267 AGCTACTGCC
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
32 46 1.00
ACGTcount: A:0.35, C:0.13, G:0.16, T:0.35
Consensus pattern (32 bp):
TATCGATACAATGTATCGATACATAAGTGTTG
Found at i:892322 original size:13 final size:13
Alignment explanation
Indices: 892304--892328 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
892294 ATTACTCAAA
892304 TGTATCGATACAT
1 TGTATCGATACAT
892317 TGTATCGATACA
1 TGTATCGATACA
892329 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:892378 original size:32 final size:32
Alignment explanation
Indices: 892337--892412 Score: 125
Period size: 32 Copynumber: 2.4 Consensus size: 32
892327 CACTGATCTT
* *
892337 TGTATCGATACATGCAGGCAAATTTGCCGAGA
1 TGTATCGATACATACAGGCAAATTTGCCCAGA
892369 TGTATCGATACATACAGGCAAATTTGCCCAGA
1 TGTATCGATACATACAGGCAAATTTGCCCAGA
*
892401 TGTATTGATACA
1 TGTATCGATACA
892413 CTATGAAATG
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
32 41 1.00
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.28
Consensus pattern (32 bp):
TGTATCGATACATACAGGCAAATTTGCCCAGA
Found at i:892520 original size:22 final size:22
Alignment explanation
Indices: 892492--892538 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
892482 ATTTTTTGCA
*
892492 TCATAAGTGATCAGGATTCATG
1 TCATAAGTGATCAAGATTCATG
892514 TCATAAGTGATCAAGATTCATG
1 TCATAAGTGATCAAGATTCATG
892536 TCA
1 TCA
892539 AATCTTAATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.34, C:0.15, G:0.19, T:0.32
Consensus pattern (22 bp):
TCATAAGTGATCAAGATTCATG
Found at i:906281 original size:11 final size:10
Alignment explanation
Indices: 906259--906312 Score: 74
Period size: 10 Copynumber: 5.3 Consensus size: 10
906249 CGTCCTCCGC
906259 AAAAAAACAA
1 AAAAAAACAA
*
906269 AACAAAACAA
1 AAAAAAACAA
906279 AAAAAATA-AA
1 AAAAAA-ACAA
906289 AAAAAAACAA
1 AAAAAAACAA
906299 AAAAACAACAA
1 AAAAA-AACAA
906310 AAA
1 AAA
906313 GGGTCCGGAT
Statistics
Matches: 39, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
9 1 0.03
10 29 0.74
11 9 0.23
ACGTcount: A:0.87, C:0.11, G:0.00, T:0.02
Consensus pattern (10 bp):
AAAAAAACAA
Found at i:906311 original size:19 final size:18
Alignment explanation
Indices: 906258--906312 Score: 65
Period size: 19 Copynumber: 2.9 Consensus size: 18
906248 GCGTCCTCCG
*
906258 CAAAAAAACAAAACAAAA
1 CAAAAAAACAAAAAAAAA
*
906276 CAAAAAAAATAAAAAAAAAA
1 C-AAAAAAA-CAAAAAAAAA
906296 CAAAAAAACAACAAAAA
1 CAAAAAAACAA-AAAAA
906313 GGGTCCGGAT
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
18 3 0.10
19 19 0.61
20 9 0.29
ACGTcount: A:0.85, C:0.13, G:0.00, T:0.02
Consensus pattern (18 bp):
CAAAAAAACAAAAAAAAA
Found at i:907913 original size:34 final size:33
Alignment explanation
Indices: 907802--907962 Score: 153
Period size: 34 Copynumber: 4.7 Consensus size: 33
907792 CTTCTAAAGT
* *
907802 CCACAACTCCGTGGCACTTTTTTTTTCTTTTTAAAGC
1 CCACAACTCCGTGGCAC---CTTTTTCCTTTT-AAGC
* * * *
907839 CCACAACTCTGTGGCA-CTCTTTTCCGTCTAAGT
1 CCACAACTCCGTGGCACCT-TTTTCCTTTTAAGC
907872 CCACAACTCCGTGGCACCTTTCTTCCTTTTAAGC
1 CCACAACTCCGTGGCACCTTT-TTCCTTTTAAGC
* *
907906 CCACAACTCCATGGCACTCTTTTTCCTTTTAAGT
1 CCACAACTCCGTGGCAC-CTTTTTCCTTTTAAGC
** *
907940 CCACAACTTTGTGGCACCCTTTT
1 CCACAACTCCGTGGCACCTTTTT
907963 AAGCCCACAA
Statistics
Matches: 104, Mismatches: 16, Indels: 12
0.79 0.12 0.09
Matches are distributed among these distances:
33 26 0.25
34 59 0.57
35 4 0.04
37 15 0.14
ACGTcount: A:0.19, C:0.33, G:0.12, T:0.37
Consensus pattern (33 bp):
CCACAACTCCGTGGCACCTTTTTCCTTTTAAGC
Found at i:907945 original size:68 final size:68
Alignment explanation
Indices: 907798--907957 Score: 205
Period size: 68 Copynumber: 2.3 Consensus size: 68
907788 CAACCTTCTA
* * * **
907798 AAGTCCACAACTCCGTGGCACTTTTTTTTTCTTTTTAAAGCCCACAACTCTGTGGCACTCTTTTC
1 AAGTCCACAACTCCGTGGCAC--CTTTCTTCCTTTTAAAGCCCACAACTCCATGGCACTCTTTTC
907863 CGTCT
64 CGTCT
907868 AAGTCCACAACTCCGTGGCACCTTTCTTCCTTTT-AAGCCCACAACTCCATGGCACTCTTTTTCC
1 AAGTCCACAACTCCGTGGCACCTTTCTTCCTTTTAAAGCCCACAACTCCATGGCACTC-TTTTCC
* *
907932 TTTT
65 GTCT
**
907936 AAGTCCACAACTTTGTGGCACC
1 AAGTCCACAACTCCGTGGCACC
907958 CTTTTAAGCC
Statistics
Matches: 80, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
67 21 0.26
68 38 0.47
70 21 0.26
ACGTcount: A:0.20, C:0.33, G:0.12, T:0.35
Consensus pattern (68 bp):
AAGTCCACAACTCCGTGGCACCTTTCTTCCTTTTAAAGCCCACAACTCCATGGCACTCTTTTCCG
TCT
Found at i:907960 original size:27 final size:28
Alignment explanation
Indices: 907930--908001 Score: 101
Period size: 27 Copynumber: 2.6 Consensus size: 28
907920 CACTCTTTTT
* *
907930 CCTTTTAAGTCCACAACTTTGTGGCA-C
1 CCTTTTAAGCCCACAACTTGGTGGCACC
*
907957 CCTTTTAAGCCCACAAGTTGGTGGCACC
1 CCTTTTAAGCCCACAACTTGGTGGCACC
907985 CCTTTTAAAGCCCACAA
1 CCTTTT-AAGCCCACAA
908002 GTCAGTGGCA
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
27 23 0.57
28 7 0.17
29 10 0.25
ACGTcount: A:0.25, C:0.32, G:0.15, T:0.28
Consensus pattern (28 bp):
CCTTTTAAGCCCACAACTTGGTGGCACC
Found at i:908000 original size:29 final size:28
Alignment explanation
Indices: 907930--908057 Score: 109
Period size: 28 Copynumber: 4.6 Consensus size: 28
907920 CACTCTTTTT
* * *
907930 CCTTTT-AAGTCCACAACTTTGTGGCAC
1 CCTTTTAAAGCCCACAAGTTGGTGGCAC
907957 CCTTTT-AAGCCCACAAGTTGGTGGCACC
1 CCTTTTAAAGCCCACAAGTTGGTGGCA-C
** *
907985 CCTTTTAAAGCCCACAAGTCAGTGGCAA
1 CCTTTTAAAGCCCACAAGTTGGTGGCAC
** * *
908013 CCTTCAAAAGCACACAAGTTGAT-GCAAC
1 CCTTTTAAAGCCCACAAGTTGGTGGC-AC
*
908041 CCTTTCAAAAGCCCACA
1 CCTTT-TAAAGCCCACA
908058 CAAGTTGATG
Statistics
Matches: 82, Mismatches: 15, Indels: 6
0.80 0.15 0.06
Matches are distributed among these distances:
27 25 0.30
28 29 0.35
29 28 0.34
ACGTcount: A:0.30, C:0.31, G:0.16, T:0.23
Consensus pattern (28 bp):
CCTTTTAAAGCCCACAAGTTGGTGGCAC
Found at i:908289 original size:49 final size:48
Alignment explanation
Indices: 908177--908347 Score: 222
Period size: 48 Copynumber: 3.5 Consensus size: 48
908167 ACCTTGAAGA
908177 CCAATGTCA-CTGGCCTTGAATCAGCACATTGGCATCTTCACTTTAAGT
1 CCAATGT-AGCTGGCCTTGAATCAGCACATTGGCATCTTCACTTTAAGT
908225 CCAATGTAGCTGGCCTTGAATCAGCACATTGGCATCTTCACCTTTAAGT
1 CCAATGTAGCTGGCCTTGAATCAGCACATTGGCATCTTCA-CTTTAAGT
* * * *
908274 CCAATAG-CGCTGGCCTTGAATCAGCATATTGGCACCTTTTTCA-TCTTGAGT
1 CCAAT-GTAGCTGGCCTTGAATCAGCACATTGGCA---TCTTCACT-TTAAGT
908325 CCAATGTAGCTGGCCTTGAATCA
1 CCAATGTAGCTGGCCTTGAATCA
908348 ACGCATTAGC
Statistics
Matches: 110, Mismatches: 5, Indels: 13
0.86 0.04 0.10
Matches are distributed among these distances:
47 1 0.01
48 38 0.35
49 38 0.35
50 3 0.03
51 25 0.23
52 5 0.05
ACGTcount: A:0.24, C:0.26, G:0.19, T:0.31
Consensus pattern (48 bp):
CCAATGTAGCTGGCCTTGAATCAGCACATTGGCATCTTCACTTTAAGT
Found at i:909088 original size:13 final size:13
Alignment explanation
Indices: 909070--909112 Score: 50
Period size: 13 Copynumber: 3.1 Consensus size: 13
909060 GGACGAATTC
909070 ATAACTTTTTGTT
1 ATAACTTTTTGTT
*
909083 ATAACTTTGGTTTTTT
1 ATAAC-TT--TTTGTT
909099 ATAACTTTTTGTT
1 ATAACTTTTTGTT
909112 A
1 A
909113 AGCCCGAATC
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
13 11 0.44
14 2 0.08
15 2 0.08
16 10 0.40
ACGTcount: A:0.23, C:0.07, G:0.09, T:0.60
Consensus pattern (13 bp):
ATAACTTTTTGTT
Found at i:909306 original size:13 final size:13
Alignment explanation
Indices: 909288--909312 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
909278 CATAAAGTGT
909288 TGTATCGATACAA
1 TGTATCGATACAA
909301 TGTATCGATACA
1 TGTATCGATACA
909313 TAAGTTTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:909325 original size:19 final size:19
Alignment explanation
Indices: 909266--909331 Score: 65
Period size: 19 Copynumber: 3.8 Consensus size: 19
909256 ATTTCAACGA
909266 TTTT-TATCGATACATAAAG
1 TTTTGTATCGATACAT-AAG
*
909285 TGTTGTATCGATAC--AA-
1 TTTTGTATCGATACATAAG
909301 ---TGTATCGATACATAAG
1 TTTTGTATCGATACATAAG
909317 TTTTGTATCGATACA
1 TTTTGTATCGATACA
909332 ATGTAAGCTA
Statistics
Matches: 39, Mismatches: 1, Indels: 14
0.72 0.02 0.26
Matches are distributed among these distances:
13 11 0.28
15 2 0.05
17 2 0.05
19 15 0.38
20 9 0.23
ACGTcount: A:0.33, C:0.12, G:0.15, T:0.39
Consensus pattern (19 bp):
TTTTGTATCGATACATAAG
Found at i:909328 original size:32 final size:33
Alignment explanation
Indices: 909270--909336 Score: 118
Period size: 32 Copynumber: 2.1 Consensus size: 33
909260 CAACGATTTT
909270 TATCGATACATAAAGTGTTGTATCGATACAATG
1 TATCGATACATAAAGTGTTGTATCGATACAATG
*
909303 TATCGATACAT-AAGTTTTGTATCGATACAATG
1 TATCGATACATAAAGTGTTGTATCGATACAATG
909335 TA
1 TA
909337 AGCTACTGCC
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
32 22 0.67
33 11 0.33
ACGTcount: A:0.36, C:0.12, G:0.16, T:0.36
Consensus pattern (33 bp):
TATCGATACATAAAGTGTTGTATCGATACAATG
Found at i:909392 original size:13 final size:12
Alignment explanation
Indices: 909352--909432 Score: 61
Period size: 13 Copynumber: 7.1 Consensus size: 12
909342 CTGCCAAAAA
909352 ATGTATCGATAC
1 ATGTATCGATAC
909364 AT-TACTC-A-A-
1 ATGTA-TCGATAC
909373 ATGTATCGATAC
1 ATGTATCGATAC
*
909385 ATTGTATCAATAC
1 A-TGTATCGATAC
909398 AT-TACTC-A-A-
1 ATGTA-TCGATAC
909407 ATGTATCGATAC
1 ATGTATCGATAC
909419 ATTGTATCGATAC
1 A-TGTATCGATAC
909432 A
1 A
909433 CTGATCTTTG
Statistics
Matches: 56, Mismatches: 1, Indels: 23
0.70 0.01 0.29
Matches are distributed among these distances:
9 8 0.14
10 8 0.14
11 8 0.14
12 9 0.16
13 23 0.41
ACGTcount: A:0.37, C:0.17, G:0.11, T:0.35
Consensus pattern (12 bp):
ATGTATCGATAC
Found at i:909398 original size:34 final size:34
Alignment explanation
Indices: 909353--909432 Score: 151
Period size: 34 Copynumber: 2.4 Consensus size: 34
909343 TGCCAAAAAA
909353 TGTATCGATACATTACTCAAATGTATCGATACAT
1 TGTATCGATACATTACTCAAATGTATCGATACAT
*
909387 TGTATCAATACATTACTCAAATGTATCGATACAT
1 TGTATCGATACATTACTCAAATGTATCGATACAT
909421 TGTATCGATACA
1 TGTATCGATACA
909433 CTGATCTTTG
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
34 44 1.00
ACGTcount: A:0.36, C:0.17, G:0.11, T:0.35
Consensus pattern (34 bp):
TGTATCGATACATTACTCAAATGTATCGATACAT
Found at i:909485 original size:52 final size:52
Alignment explanation
Indices: 909441--909569 Score: 231
Period size: 52 Copynumber: 2.5 Consensus size: 52
909431 CACTGATCTT
909441 TGTATCGATACATGCAGGCAAATTTGCCAAGATGTATCGATACACTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCAAGATGTATCGATACACTATAAAA
* * *
909493 TGTATCGATACATACAGGCAAATTTGCCCAGATGTATCGATACACTATGAAA
1 TGTATCGATACATGCAGGCAAATTTGCCAAGATGTATCGATACACTATAAAA
909545 TGTATCGATACATGCAGGCAAATTT
1 TGTATCGATACATGCAGGCAAATTT
909570 TCATATTTCG
Statistics
Matches: 73, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
52 73 1.00
ACGTcount: A:0.36, C:0.18, G:0.18, T:0.28
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCAAGATGTATCGATACACTATAAAA
Found at i:909643 original size:22 final size:22
Alignment explanation
Indices: 909618--909662 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
909608 TTTTTGCATG
909618 ATAAGTGATCAGGATTCATGTC
1 ATAAGTGATCAGGATTCATGTC
*
909640 ATAAGTGATTAGGATTCATGTC
1 ATAAGTGATCAGGATTCATGTC
909662 A
1 A
909663 AATCTCAATT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.33, C:0.11, G:0.22, T:0.33
Consensus pattern (22 bp):
ATAAGTGATCAGGATTCATGTC
Found at i:917753 original size:16 final size:16
Alignment explanation
Indices: 917732--917763 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
917722 GTCCAGGCTC
917732 CCCTTATAGAGAAAAA
1 CCCTTATAGAGAAAAA
917748 CCCTTATAGAGAAAAA
1 CCCTTATAGAGAAAAA
917764 GATAGTCACT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.19, G:0.12, T:0.19
Consensus pattern (16 bp):
CCCTTATAGAGAAAAA
Found at i:926548 original size:28 final size:28
Alignment explanation
Indices: 926516--926579 Score: 74
Period size: 28 Copynumber: 2.3 Consensus size: 28
926506 CTCATATGCC
** **
926516 TAGTGGAGTCTAGACAACCTAAAATCCT
1 TAGTGGAACCTAGACAACCTAAAATCAA
* *
926544 TAGTGGAACCTAGATAACCTACAATCAA
1 TAGTGGAACCTAGACAACCTAAAATCAA
926572 TAGTGGAA
1 TAGTGGAA
926580 TTAGGAAAAC
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.39, C:0.19, G:0.19, T:0.23
Consensus pattern (28 bp):
TAGTGGAACCTAGACAACCTAAAATCAA
Found at i:929188 original size:404 final size:404
Alignment explanation
Indices: 928320--929358 Score: 876
Period size: 404 Copynumber: 2.6 Consensus size: 404
928310 CACTCCTGCA
* * *** * * * * * *
928320 AGCTTCTGCCTACGCCACAATTGGGA-CATCTACTCTACTTGCAGAACTTGGTAACATCCCTGTA
1 AGCTTATGCCTACACCACAACCAGGACCATCTACTCTAATTTCAGAACTTGGCAGCATCACTGCA
* * * * *
928384 GGTGCAAGCCTAACCTTCCTGCATGACCATGCCCCATCGCCCACACACGCGTGCCAACTGATTAT
66 GGTGCAAGCCTAACCTTCCAGCATAACCATGCCCCATCACCCACACACGCATGCCAACTGATCAT
* * ** * *
928449 GCACGTAGTGACTGAGGGTCTCACCACGGATCACTTGCACCCCGTAGGGTCTCCGTCACCACAGT
131 GCACATAGTGACTGAGGGCCTCACCACAAATCACTTGCACCCCATAGGGTCTCCATCACCACAGT
* * * * *
928514 TGGCCATCCGATCATTGAAACCCATGATCATAAGGCATGCACAACCTAGATTTTAGTCGAGAAGG
196 TGGCCATACGATCATCGAAAACCACGATCATAAGGCATGCACAACCTAGATTTTAATCGAGAAGG
** * ** * * *
928579 ATGCTATACTGGGTTGCGAACCATGCCAGGTGCATGAAGCATAATCCTCAACAGGTAACTAGTAG
261 ACACTATACCGGGTCACGAACCATGCCAGGTGCATGAAGCATAATCCTCAACA-GCAACCAGTAA
* ** * *
928644 GACGATCCCACCATTTTCGATGCAAAGGCCACGAGACTGCCCCTACTCAAGGGGCATGACCAGGC
325 GACGAGCCCACCATTGACGATGCAAAGGCCACGAGACTACCCCTACTCAAGAGGCATGACCAGGC
* *
928709 CAAACTCACACATGT
390 CAAACCCAAACATGT
* * * * * * * *
928724 AGCTTCTTCCTATACCACAACTATGACCATTTACTCAAATTTGAGAACTTGGCAGCATCACTGCA
1 AGCTTATGCCTACACCACAACCAGGACCATCTACTCTAATTTCAGAACTTGGCAGCATCACTGCA
** * * *
928789 GGTGCAAGCCTAACCTTCCAGCATAACCATGCGTCATTATCCACACACGCATGCTAA-TCGATCA
66 GGTGCAAGCCTAACCTTCCAGCATAACCATGCCCCATCACCCACACACGCATGCCAACT-GATCA
* * * * **
928853 TGCTCATATTGA-TCGAGGGCCTCACCACAAATCACTTGGACCGCATAGGGTCTCCATCACCGTA
130 TGCACATAGTGACT-GAGGGCCTCACCACAAATCACTTGCACCCCATAGGGTCTCCATCACCACA
* * * * * * * *
928917 GTTGGGCATACTATCATCGAAAACCACGATCGTATGGCATGCACGACCTAGGTTTTAATTGAGAG
194 GTTGGCCATACGATCATCGAAAACCACGATCATAAGGCATGCACAACCTAGATTTTAATCGAGAA
* * *
928982 GGACACTCTACCGGG-CACGATCCATGCCAGGTGCGTGAAGCATAATCCATGGCAA-A-CAACCA
259 GGACACTATACCGGGTCACGAACCATGCCAGGTGCATGAAGCATAATCC-T--CAACAGCAACCA
* * *** * * *
929044 GTAAGATGAGCCCACCATTGACGATGCAAGGGCTGTGAGACTACCCTTGCTCAAGAGGCATGGCC
321 GTAAGACGAGCCCACCATTGACGATGCAAAGGCCACGAGACTACCCCTACTCAAGAGGCATGACC
*
929109 AGGCCAAACCCAAACCTGT
386 AGGCCAAACCCAAACATGT
* * * * * ***
929128 AGCTTATGCCTGCACCATAACCAGGACCATCTACTCTATTTTCAAAACTTTGCAGCATCACCATA
1 AGCTTATGCCTACACCACAACCAGGACCATCTACTCTAATTTCAGAACTTGGCAGCATCACTGCA
* * ** * ** * ** *
929193 AGTG-TAGACCTAACCTT-TTGACATGACCATGCCCGGTTACCTGCACACG--TGCCAACCGATC
66 GGTGCAAG-CCTAACCTTCCAG-CATAACCATGCCCCATCACCCACACACGCATGCCAACTGATC
* * * * * * *** ***
929254 AGTGCACGTAGCGACCGAAGGCCTCACCACAGATCACTTGGACCTTGTAGGGTCTCCATCACTGT
129 A-TGCACATAGTGACTGAGGGCCTCACCACAAATCACTTGCACCCCATAGGGTCTCCATCACCAC
* * *
929319 AGTTGTG-CATCCGATCATCGAAAACCATGATCGTAAGGCA
193 AGTTG-GCCATACGATCATCGAAAACCACGATCATAAGGCA
929359 CGTATGTCCT
Statistics
Matches: 501, Mismatches: 122, Indels: 25
0.77 0.19 0.04
Matches are distributed among these distances:
402 10 0.02
403 88 0.18
404 204 0.41
405 195 0.39
406 1 0.00
407 3 0.01
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (404 bp):
AGCTTATGCCTACACCACAACCAGGACCATCTACTCTAATTTCAGAACTTGGCAGCATCACTGCA
GGTGCAAGCCTAACCTTCCAGCATAACCATGCCCCATCACCCACACACGCATGCCAACTGATCAT
GCACATAGTGACTGAGGGCCTCACCACAAATCACTTGCACCCCATAGGGTCTCCATCACCACAGT
TGGCCATACGATCATCGAAAACCACGATCATAAGGCATGCACAACCTAGATTTTAATCGAGAAGG
ACACTATACCGGGTCACGAACCATGCCAGGTGCATGAAGCATAATCCTCAACAGCAACCAGTAAG
ACGAGCCCACCATTGACGATGCAAAGGCCACGAGACTACCCCTACTCAAGAGGCATGACCAGGCC
AAACCCAAACATGT
Found at i:952853 original size:35 final size:35
Alignment explanation
Indices: 952807--952878 Score: 135
Period size: 35 Copynumber: 2.1 Consensus size: 35
952797 CAAAATTATG
*
952807 ATTTTCAAACCAAAATGGTCTTACTTATCCTTCAA
1 ATTTTCAAACCAAAATGGTCTTACTTATCCTTAAA
952842 ATTTTCAAACCAAAATGGTCTTACTTATCCTTAAA
1 ATTTTCAAACCAAAATGGTCTTACTTATCCTTAAA
952877 AT
1 AT
952879 GTTTGTGCCT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.36, C:0.21, G:0.06, T:0.38
Consensus pattern (35 bp):
ATTTTCAAACCAAAATGGTCTTACTTATCCTTAAA
Found at i:969560 original size:84 final size:84
Alignment explanation
Indices: 969413--969580 Score: 291
Period size: 84 Copynumber: 2.0 Consensus size: 84
969403 GACAATCAAG
* **
969413 CAAGGATTAAATGGCTCAAGTTGATATATAAAGAATCACAAGATCGGATGATGTGCCGATAGGAT
1 CAAGGATTAAACGGCTCAAGTTGATATATAAAGAATCACAAGATCGGATGATGCACCGATAGGAT
*
969478 GAGATGCAAACCTAAATTA
66 GAGATGCAAACCCAAATTA
*
969497 CAAGGATTAAACGGCTCAAGTTGATATATAAAGAATCACAAGATCGGATGATGCACCGGTAGGAT
1 CAAGGATTAAACGGCTCAAGTTGATATATAAAGAATCACAAGATCGGATGATGCACCGATAGGAT
969562 GAGATGCAAACCCAAATTA
66 GAGATGCAAACCCAAATTA
969581 TGAAGCTCAT
Statistics
Matches: 79, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
84 79 1.00
ACGTcount: A:0.40, C:0.15, G:0.23, T:0.22
Consensus pattern (84 bp):
CAAGGATTAAACGGCTCAAGTTGATATATAAAGAATCACAAGATCGGATGATGCACCGATAGGAT
GAGATGCAAACCCAAATTA
Found at i:976770 original size:12 final size:12
Alignment explanation
Indices: 976750--976799 Score: 52
Period size: 12 Copynumber: 4.3 Consensus size: 12
976740 CTTCATACCC
976750 AAAAAAAACCAA
1 AAAAAAAACCAA
*
976762 AAGAAAAA-CAA
1 AAAAAAAACCAA
976773 AAAAAAAA-CAA
1 AAAAAAAACCAA
*
976784 GCAAAAAAA-CAA
1 -AAAAAAAACCAA
976796 AAAA
1 AAAA
976800 CCAAGGAAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
11 16 0.48
12 17 0.52
ACGTcount: A:0.84, C:0.12, G:0.04, T:0.00
Consensus pattern (12 bp):
AAAAAAAACCAA
Found at i:976780 original size:23 final size:22
Alignment explanation
Indices: 976750--976799 Score: 66
Period size: 23 Copynumber: 2.2 Consensus size: 22
976740 CTTCATACCC
*
976750 AAAAAAAACCAA-AAGAAAAACA
1 AAAAAAAAACAACAA-AAAAACA
976772 AAAAAAAAACAAGCAAAAAAACA
1 AAAAAAAAACAA-CAAAAAAACA
976795 AAAAA
1 AAAAA
976800 CCAAGGAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
22 11 0.44
23 12 0.48
24 2 0.08
ACGTcount: A:0.84, C:0.12, G:0.04, T:0.00
Consensus pattern (22 bp):
AAAAAAAAACAACAAAAAAACA
Found at i:976804 original size:20 final size:19
Alignment explanation
Indices: 976750--976811 Score: 61
Period size: 20 Copynumber: 3.0 Consensus size: 19
976740 CTTCATACCC
976750 AAAAAAAACCAAAAGAAAAACA
1 AAAAAAAACC--AAGAAAAA-A
*
976772 AAAAAAAAACAAGCAAAAAA
1 AAAAAAAACCAAG-AAAAAA
*
976792 ACAAAAAACCAAGGAAAAAA
1 AAAAAAAACCAA-GAAAAAA
976812 TAACCAAAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
20 20 0.57
21 6 0.17
22 9 0.26
ACGTcount: A:0.81, C:0.13, G:0.06, T:0.00
Consensus pattern (19 bp):
AAAAAAAACCAAGAAAAAA
Found at i:978089 original size:28 final size:28
Alignment explanation
Indices: 978046--979122 Score: 941
Period size: 28 Copynumber: 37.5 Consensus size: 28
978036 CGTTCATCTC
* *
978046 TTCAAAGCACATAAGTCAGTGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
* *
978074 TTCAAAGCCCACAAGTTAATGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
* *
978102 CTT-AAAGCCCACAAGCCAGTGGCACTCTT
1 -TTCAAAGCCCACAAGTCAGTGGCAC-CCT
* * *
978131 TTCAAAGCCCACACGAGTCGGTGGTAACTCTT
1 TTCAAAGCCCACA--AGTCAGTGG-CAC-CCT
* * * **
978163 TTCAAAGCTCGCAAGTTAGTGGCTTCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
978191 TTCAAAGCCCACAAGTCAGTGGCACCCCT
1 TTCAAAGCCCACAAGTCAGTGGCA-CCCT
978220 TT-AAAGCCCACAAGTCAGTGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
* * *
978247 TTCAAAGCCCACAAGTTAGTGGCATTCTT
1 TTCAAAGCCCACAAGTCAGTGGCA-CCCT
*
978276 TTCAAAGCCCATAAGTCAGTGGCATCCCT
1 TTCAAAGCCCACAAGTCAGTGGCA-CCCT
* * * *
978305 TT-AAAGCCCACAAATTAGTGACATCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
* * *
978332 ATCAAAGCCCACAAGTTAGTGGCACTCTT
1 TTCAAAGCCCACAAGTCAGTGGCAC-CCT
* * *
978361 TTCAAAGCCCACACGAGTCGGTGGTAACTCTT
1 TTCAAAGCCCACA--AGTCAGTGG-CAC-CCT
* * *
978393 TTCAAAGCCAACAAGTTAGTGGCATCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
* *
978421 TTCAAAGCCCACGAA-TCGGTGGCAACTCTT
1 TTCAAAGCCCAC-AAGTCAGTGGC-AC-CCT
* *
978451 TTCAAAGCCCACAAGTTAGTGGCATCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
* *
978479 TTCAAAGCCCACAAGTTAGTGGCACTCTT
1 TTCAAAGCCCACAAGTCAGTGGCAC-CCT
* *
978508 TTCAAAGCCCACACGAGTCGGTGGCAACTCTT
1 TTCAAAGCCCACA--AGTCAGTGGC-AC-CCT
* *
978540 TTCAAATCCCACAAGTCAGTGGCATCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
* * *
978568 TTCAAAGCCCACGAGTCGGTGGCAACTCTT
1 TTCAAAGCCCACAAGTCAGTGGC-AC-CCT
* * * *
978598 TTCAGAGCCCATAAGTCAGTGGCATCTT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
978626 TTCCAAAGCCCACAAGTCAGTGGCACCCT
1 TT-CAAAGCCCACAAGTCAGTGGCACCCT
**
978655 TTCAAAGCCCATGAGTCAGTGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
* * ***
978683 TTCAAAGCCCATAAGTTAGTGGCATTTTT
1 TTCAAAGCCCACAAGTCAGTGGCA-CCCT
* * * * *
978712 TTAAAAGCGCACATGTCAATGGCATCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
* *
978740 TTCAAAGCCCACAAGTCAATGGCACTCTT
1 TTCAAAGCCCACAAGTCAGTGGCAC-CCT
* * * *
978769 TTTAGAGCCCACACGAGTCGGTGGCAACTCTT
1 TTCAAAGCCCACA--AGTCAGTGGC-AC-CCT
* *
978801 TTCAAAGCTCACAAGTCAGTGGCATCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
* * *
978829 TTC-AAGCCCACGAGTCGGTGGCAACTCTT
1 TTCAAAGCCCACAAGTCAGTGGC-AC-CCT
* * * **
978858 TTTAAAGCCCACGAGTCGGTGGCAACTTTT
1 TTCAAAGCCCACAAGTCAGTGGC-AC-CCT
978888 TTCAAAGCCCACAAGTCAGTGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
** *
978916 TTCAAAGCCCATGAGTTAGTGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
* * * *
978944 TTCAAAGCCCATAAGTTAGTGGCATTCTT
1 TTCAAAGCCCACAAGTCAGTGGCA-CCCT
* *
978973 TTCAAAGCCCACAAGTTAGTGGCATCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
*
979001 TTCAAAGCCCACAAGTTAGTGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
*
979029 TTCAAAG-CC-CAATTCAGTGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
*
979055 TTCCAAG-CC-CAAGTCAGTGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
*
979081 TTCAAAGCCCACAAGT-ATGTGGCACTCTT
1 TTCAAAGCCCACAAGTCA-GTGGCAC-CCT
979110 TTCAAAGCCCACA
1 TTCAAAGCCCACA
979123 CAAGTTTGTG
Statistics
Matches: 872, Mismatches: 139, Indels: 75
0.80 0.13 0.07
Matches are distributed among these distances:
26 45 0.05
27 31 0.04
28 389 0.45
29 190 0.22
30 118 0.14
31 30 0.03
32 69 0.08
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (28 bp):
TTCAAAGCCCACAAGTCAGTGGCACCCT
Found at i:978138 original size:57 final size:58
Alignment explanation
Indices: 978046--979122 Score: 1006
Period size: 57 Copynumber: 18.7 Consensus size: 58
978036 CGTTCATCTC
* * * * *
978046 TTCAAAGCACATAAGTCAGTGGCAC-CCTTTCAAAGCCCACAAGTTAATGGCACCCTC
1 TTCAAAGCCCACAAGTCAGTGGCACTCCTTTCAAAGCCCACAAGTCAGTGGCACCCTT
* * * * *
978103 TT-AAAGCCCACAAGCCAGTGGCACTCTTTTCAAAGCCCACACGAGTCGGTGGTAACTCTT
1 TTCAAAGCCCACAAGTCAGTGGCACTCCTTTCAAAGCCCACA--AGTCAGTGG-CACCCTT
* * * * *
978163 TTCAAAGCTCGCAAGTTAGTGGC-TTCCTTTCAAAGCCCACAAGTCAGTGGCACCCCT
1 TTCAAAGCCCACAAGTCAGTGGCACTCCTTTCAAAGCCCACAAGTCAGTGGCACCCTT
* **
978220 TT-AAAGCCCACAAGTCAGTGGCAC-CCTTTCAAAGCCCACAAGTTAGTGGCATTCTT
1 TTCAAAGCCCACAAGTCAGTGGCACTCCTTTCAAAGCCCACAAGTCAGTGGCACCCTT
* * * * *
978276 TTCAAAGCCCATAAGTCAGTGGCA-TCCCTTT-AAAGCCCACAAATTAGTGACATCC-T
1 TTCAAAGCCCACAAGTCAGTGGCACT-CCTTTCAAAGCCCACAAGTCAGTGGCACCCTT
* * * * * *
978332 ATCAAAGCCCACAAGTTAGTGGCACTCTTTTCAAAGCCCACACGAGTCGGTGGTAACTCTT
1 TTCAAAGCCCACAAGTCAGTGGCACTCCTTTCAAAGCCCACA--AGTCAGTGG-CACCCTT
* * * *
978393 TTCAAAGCCAACAAGTTAGTGGCA-TCCTTTCAAAGCCCACGAA-TCGGTGGCAACTCTT
1 TTCAAAGCCCACAAGTCAGTGGCACTCCTTTCAAAGCCCAC-AAGTCAGTGGC-ACCCTT
* * *
978451 TTCAAAGCCCACAAGTTAGTGGCA-TCCTTTCAAAGCCCACAAGTTAGTGGCACTCTT
1 TTCAAAGCCCACAAGTCAGTGGCACTCCTTTCAAAGCCCACAAGTCAGTGGCACCCTT
* * * *
978508 TTCAAAGCCCACACGAGTCGGTGGCAACTCTTTTCAAATCCCACAAGTCAGTGGCATCC-T
1 TTCAAAGCCCACA--AGTCAGTGGC-ACTCCTTTCAAAGCCCACAAGTCAGTGGCACCCTT
* * * * * *
978568 TTCAAAGCCCACGAGTCGGTGGCAACTCTTTTCAGAGCCCATAAGTCAGTGGCA-TCTT
1 TTCAAAGCCCACAAGTCAGTGGC-ACTCCTTTCAAAGCCCACAAGTCAGTGGCACCCTT
**
978626 TTCCAAAGCCCACAAGTCAGTGGCAC-CCTTTCAAAGCCCATGAGTCAGTGGCACCC-T
1 TT-CAAAGCCCACAAGTCAGTGGCACTCCTTTCAAAGCCCACAAGTCAGTGGCACCCTT
* * * ** * * * * *
978683 TTCAAAGCCCATAAGTTAGTGGCATTTTTTTAAAAGCGCACATGTCAATGGCATCC-T
1 TTCAAAGCCCACAAGTCAGTGGCACTCCTTTCAAAGCCCACAAGTCAGTGGCACCCTT
* * * * * *
978740 TTCAAAGCCCACAAGTCAATGGCACTCTTTTTAGAGCCCACACGAGTCGGTGGCAACTCTT
1 TTCAAAGCCCACAAGTCAGTGGCACTCCTTTCAAAGCCCACA--AGTCAGTGGC-ACCCTT
* * * *
978801 TTCAAAGCTCACAAGTCAGTGGCA-TCCTTTC-AAGCCCACGAGTCGGTGGCAACTCTT
1 TTCAAAGCCCACAAGTCAGTGGCACTCCTTTCAAAGCCCACAAGTCAGTGGC-ACCCTT
* * * **
978858 TTTAAAGCCCACGAGTCGGTGGCAACTTTTTTCAAAGCCCACAAGTCAGTGGCACCC-T
1 TTCAAAGCCCACAAGTCAGTGGC-ACTCCTTTCAAAGCCCACAAGTCAGTGGCACCCTT
** * * * **
978916 TTCAAAGCCCATGAGTTAGTGGCAC-CCTTTCAAAGCCCATAAGTTAGTGGCATTCTT
1 TTCAAAGCCCACAAGTCAGTGGCACTCCTTTCAAAGCCCACAAGTCAGTGGCACCCTT
* *
978973 TTCAAAGCCCACAAGTTAGTGGCA-TCCTTTCAAAGCCCACAAGTTAGTGGCACCC-T
1 TTCAAAGCCCACAAGTCAGTGGCACTCCTTTCAAAGCCCACAAGTCAGTGGCACCCTT
* *
979029 TTCAAAG-CC-CAATTCAGTGGCAC-CCTTTCCAAG-CC-CAAGTCAGTGGCACCC-T
1 TTCAAAGCCCACAAGTCAGTGGCACTCCTTTCAAAGCCCACAAGTCAGTGGCACCCTT
*
979081 TTCAAAGCCCACAAGT-ATGTGGCACTCTTTTCAAAGCCCACA
1 TTCAAAGCCCACAAGTCA-GTGGCACTCCTTTCAAAGCCCACA
979123 CAAGTTTGTG
Statistics
Matches: 848, Mismatches: 130, Indels: 84
0.80 0.12 0.08
Matches are distributed among these distances:
52 23 0.03
53 5 0.01
54 31 0.04
55 10 0.01
56 146 0.17
57 270 0.32
58 136 0.16
59 61 0.07
60 77 0.09
61 89 0.10
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (58 bp):
TTCAAAGCCCACAAGTCAGTGGCACTCCTTTCAAAGCCCACAAGTCAGTGGCACCCTT
Found at i:978750 original size:261 final size:256
Alignment explanation
Indices: 978046--979122 Score: 1149
Period size: 261 Copynumber: 4.2 Consensus size: 256
978036 CGTTCATCTC
* * * * * * * *
978046 TTCAAAGCACATAAGTCAGTGGCAC-CCTTTCAAAGCCCACAAGTTAATGGCACCCTCTT-AAAG
1 TTCAAAGCCCACAAGTCGGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCA-TCTTTTCAAAG
* * * * * * *
978109 CCCACAAGCCAGTGGCACTCTTTTCAAAGCCCACACGAGTCGGTGGTAACTCTTTTCAAAGCTCG
65 CCCACAAGTCAGTGGCACTCCTTTCAAAG-CC-CACGAGTCAGTGG-CAC-CCTTTCAAAGCCCA
* * *
978174 CAAGTTAGTGGC-TTCCTTTCAAAGCCCACAAGTCAGTGGCACCCCTTT-AAAGCCCACAAGTCA
126 TAAGTTAGTGGCATTCTTTTCAAAGCCCACAAGTCAGTGGCA-TCCTTTCAAAGCCCACAAGTCA
* * *
978237 GTGGCACCCTTTCAAAGCCCACAAGTTAGTGGCATTCTTTTCAAAGCCCATAAGTCAGTGGCATC
190 GTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCAT-
978302 CCT
254 CCT
* ** * * * *
978305 TT-AAAGCCCACAAATTAGTGACA-TCCTATCAAAGCCCACAAGTTAGTGGCACTCTTTTCAAAG
1 TTCAAAGCCCACAAGTCGGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCA-TCTTTTCAAAG
* * * * * * *
978368 CCCACACGAGTCGGTGGTAACTCTTTTCAAAGCCAACAAGTTAGTGGCATCCTTTCAAAGCCCAC
65 CCCACA--AGTCAGTGG-CACTCCTTTCAAAGCCCACGAGTCAGTGGCACCCTTTCAAAGCCCA-
* ** * * *
978433 GAA-TCGGTGGCAACTCTTTTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTTA
126 TAAGTTAGTGGC-ATTCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCA
* * *
978497 GTGGCACTCTTTTCAAAGCCCACACGAGTCGGTGGCAACTCTTTTCAAATCCCACAAGTCAGTGG
190 GTGGCAC-CCTTTCAAAGCCCACA--AGTCAGTGGC-ACTCTTTTCAAAGCCCACAAGTCAGTGG
978562 CATCCT
251 CATCCT
* * *
978568 TTCAAAGCCCACGAGTCGGTGGCAACTCTTTTCAGAGCCCATAAGTCAGTGGCATCTTTTCCAAA
1 TTCAAAGCCCACAAGTCGGTGGC-ACTCTTTTCAAAGCCCACAAGTCAGTGGCATCTTTT-CAAA
*
978633 GCCCACAAGTCAGTGGCAC-CCTTTCAAAGCCCATGAGTCAGTGGCACCCTTTCAAAGCCCATAA
64 GCCCACAAGTCAGTGGCACTCCTTTCAAAGCCCACGAGTCAGTGGCACCCTTTCAAAGCCCATAA
* * * * * *
978697 GTTAGTGGCATTTTTTTAAAAGCGCACATGTCAATGGCATCCTTTCAAAGCCCACAAGTCAATGG
129 GTTAGTGGCATTCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGG
* * * * *
978762 CACTCTTTTTAGAGCCCACACGAGTCGGTGGCAACTCTTTTCAAAGCTCACAAGTCAGTGGCATC
194 CAC-CCTTTCAAAGCCCACA--AGTCAGTGGC-ACTCTTTTCAAAGCCCACAAGTCAGTGGCATC
978827 CT
255 CT
* * * * *
978829 TTC-AAGCCCACGAGTCGGTGGCAACTCTTTTTAAAGCCCACGAGTCGGTGGCAACTTTTTTCAA
1 TTCAAAGCCCACAAGTCGGTGGC-ACTCTTTTCAAAGCCCACAAGTCAGTGGC-A-TCTTTTCAA
* *
978893 AGCCCACAAGTCAGTGGCAC-CCTTTCAAAGCCCATGAGTTAGTGGCACCCTTTCAAAGCCCATA
63 AGCCCACAAGTCAGTGGCACTCCTTTCAAAGCCCACGAGTCAGTGGCACCCTTTCAAAGCCCATA
* *
978957 AGTTAGTGGCATTCTTTTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTTAGTG
128 AGTTAGTGGCATTCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTG
* * * *
979022 GCACCCTTTCAAAG-CC-CAATTCAGTGGCAC-CCTTTCCAAG-CC-CAAGTCAGTGGCACCCT
193 GCACCCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCATCCT
**
979081 TTCAAAGCCCACAAGTATGTGGCACTCTTTTCAAAGCCCACA
1 TTCAAAGCCCACAAGTCGGTGGCACTCTTTTCAAAGCCCACA
979123 CAAGTTTGTG
Statistics
Matches: 699, Mismatches: 98, Indels: 49
0.83 0.12 0.06
Matches are distributed among these distances:
252 36 0.05
253 17 0.02
254 8 0.01
255 2 0.00
256 8 0.01
258 65 0.09
259 22 0.03
260 107 0.15
261 267 0.38
262 60 0.09
263 15 0.02
264 51 0.07
265 7 0.01
266 34 0.05
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (256 bp):
TTCAAAGCCCACAAGTCGGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCATCTTTTCAAAGC
CCACAAGTCAGTGGCACTCCTTTCAAAGCCCACGAGTCAGTGGCACCCTTTCAAAGCCCATAAGT
TAGTGGCATTCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCA
CCCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCATCCT
Found at i:980017 original size:20 final size:20
Alignment explanation
Indices: 979994--980069 Score: 91
Period size: 20 Copynumber: 3.8 Consensus size: 20
979984 AAAGTACCTA
*
979994 AATGTATTGATACATTTTTG
1 AATGTATCGATACATTTTTG
* * *
980014 AATGTATAGATACATGTATG
1 AATGTATCGATACATTTTTG
*
980034 AATGTATCGATAC-TTTCTTC
1 AATGTATCGATACATTT-TTG
980054 AATGTATCGATACATT
1 AATGTATCGATACATT
980070 CTATCTTTTT
Statistics
Matches: 47, Mismatches: 7, Indels: 3
0.82 0.12 0.05
Matches are distributed among these distances:
19 2 0.04
20 43 0.91
21 2 0.04
ACGTcount: A:0.33, C:0.11, G:0.14, T:0.42
Consensus pattern (20 bp):
AATGTATCGATACATTTTTG
Found at i:981033 original size:20 final size:21
Alignment explanation
Indices: 980979--981039 Score: 106
Period size: 22 Copynumber: 2.9 Consensus size: 21
980969 AACCTTTGAC
980979 CATGCATTTTTTAATATGTTT
1 CATGCATTTTTTAATATGTTT
981000 CATGCATTTTTTTAATATGTTT
1 CATGCA-TTTTTTAATATGTTT
981022 CATGCA-TTTTTAATATGT
1 CATGCATTTTTTAATATGT
981040 CCAGCATCTC
Statistics
Matches: 39, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
20 12 0.31
21 6 0.15
22 21 0.54
ACGTcount: A:0.25, C:0.10, G:0.10, T:0.56
Consensus pattern (21 bp):
CATGCATTTTTTAATATGTTT
Found at i:984072 original size:983 final size:983
Alignment explanation
Indices: 982168--992983 Score: 21218
Period size: 983 Copynumber: 11.0 Consensus size: 983
982158 CCCGATCAGC
* *
982168 TTTGAAACCATTTATAGACTTCTTATAGACCATGTCAAGGCACAAATGCTTTTACAACTTTATTG
1 TTTGAAACCATTTATAGACTTCTCATTGACCATGTCAAGGCACAAATGCTTTTACAACTTTATTG
*
982233 TCCTTATTCACTTCAATTTTCTTTATATAAAATCAAAATTTTTATTCATCGGGAATACTCCAACC
66 TCCTTATTCACTTCAATTTTCTTTATATAAAATCAAAATTTTTATTCATCGGGAATACTCCTACC
982298 CCATTCCTCTGAGAGAATACTCCAACCCCGTTTTTAAACTTGTCGGGATTCAAATCTTATTCTCG
131 CCATTCCTCTGAGAGAATACTCCAACCCCGTTTTTAAACTTGTCGGGATTCAAATCTTATTCTCG
982363 CTTAAATTGTCATCATCGAGGACACTCAACCCCATTCCTCCGAGGGGATACTCCAACCCTATTTT
196 CTTAAATTGTCATCATCGAGGACACTCAACCCCATTCCTCCGAGGGGATACTCCAACCCTATTTT
982428 TTTTCAATCAAAAATTGAATCATTTTCTCTATCCCAAATTTTGAGTCATGCTTGTCTTTGAACTT
261 TTTTCAATCAAAAATTGAATCATTTTCTCTATCCCAAATTTTGAGTCATGCTTGTCTTTGAACTT
*
982493 CACCCAATCAATGAATCTAGACACGTCTCTAATATTGTCAATTTGGTTATTTTTTTTATAATCGA
326 CACCCAATCAATGAATCTAGACACGTCTCCAATATTGTCAATTTGGTTATTTTTTTTATAATCGA
982558 GGACAATTGTGAGATACATTTCGATCGTCCCTCATTTTCTTTATTGTTACTTTGTGTGATTTATT
391 GGACAATTGTGAGATACATTTCGATCGTCCCTCATTTTCTTTATTGTTACTTTGTGTGATTTATT
982623 TTATACAACTTTATTTCACTTGTTGCCGTACTAACATATTTTAATTATGATGATTATTTGAATCC
456 TTATACAACTTTATTTCACTTGTTGCCGTACTAACATATTTTAATTATGATGATTATTTGAATCC
982688 ATATTTTCAAAATTTGTTTACAAAAATTGTAAAGGCAGTGTTCCATGTCAGTATCTCTCCAGTGC
521 ATATTTTCAAAATTTGTTTACAAAAATTGTAAAGGCAGTGTTCCATGTCAGTATCTCTCCAGTGC
982753 TTGACACGGAATACCCAGTTTTCAAAGTAAAATTTAGAGCTCATTTTATATCTCTATGTTCCCCA
586 TTGACACGGAATACCCAGTTTTCAAAGTAAAATTTAGAGCTCATTTTATATCTCTATGTTCCCCA
982818 TCTCTCCGAGGTGCATATGAGATTAAAATTGTTATCAAACCTGGATTTATTTTTGTACAAAATTC
651 TCTCTCCGAGGTGCATATGAGATTAAAATTGTTATCAAACCTGGATTTATTTTTGTACAAAATTC
982883 ATGCAGTCAAGGGGATCATATTGAAATAATATCGAGTCGAAACCAATGAAACCGATGTCAAGTCA
716 ATGCAGTCAAGGGGATCATATTGAAATAATATCGAGTCGAAACCAATGAAACCGATGTCAAGTCA
982948 AAATGTAGCTAGTAAGGTACTGATTTCGGGCGTCGCGAGGAGGTTCATACCTTTTTGCACGTAAC
781 AAATGTAGCTAGTAAGGTACTGATTTCGGGCGTCGCGAGGAGGTTCATACCTTTTTGCACGTAAC
983013 CAACTCCCAGACCCAATCGATGAATCTTTGAAGTACGTGGACCACGGGATCGATGTCTCGAGTTT
846 CAACTCCCAGACCCAATCGATGAATCTTTGAAGTACGTGGACCACGGGATCGATGTCTCGAGTTT
*
983078 CGTAACTCAAGATATAGGTTTCAATAGGCATCCGATCATGCCTAGCCTAAAATGATCAGTGGCGA
911 CGTAACTCAAGATATAGGTTTCAATAGGCATCTGATCATGCCTAGCCTAAAATGATCAGTGGCGA
983143 CTCCAAAA
976 CTCCAAAA
*
983151 TTTGAAACCATTTATAGACTTCTCATTGACCATGTCAAGGCACAAATGCTTTTACAACCTTATTG
1 TTTGAAACCATTTATAGACTTCTCATTGACCATGTCAAGGCACAAATGCTTTTACAACTTTATTG
*
983216 TCCTTATTCACTTCAATTTTCTTTATATAAAATCAAAATTTTTATTCATCGGGAATACTCCAACC
66 TCCTTATTCACTTCAATTTTCTTTATATAAAATCAAAATTTTTATTCATCGGGAATACTCCTACC
983281 CCATTCCTCTGAGAGAATACTCCAACCCCGTTTTTAAACTTGTCGGGATTCAAATCTTATTCTCG
131 CCATTCCTCTGAGAGAATACTCCAACCCCGTTTTTAAACTTGTCGGGATTCAAATCTTATTCTCG
983346 CTTAAATTGTCATCATCGAGGACACTCAACCCCATTCCTCCGAGGGGATACTCCAACCCTATTTT
196 CTTAAATTGTCATCATCGAGGACACTCAACCCCATTCCTCCGAGGGGATACTCCAACCCTATTTT
983411 TTTTCAATCAAAAATTGAATCATTTTCTCTATCCCAAATTTTGAGTCATGCTTGTCTTTGAACTT
261 TTTTCAATCAAAAATTGAATCATTTTCTCTATCCCAAATTTTGAGTCATGCTTGTCTTTGAACTT
*
983476 CACCCAATCAATGAATCTAGACACGTCTCCAATATTGTAAATTTGGTTATTTTTTTTATAATCGA
326 CACCCAATCAATGAATCTAGACACGTCTCCAATATTGTCAATTTGGTTATTTTTTTTATAATCGA
983541 GGACAATTGTGAGATACATTTCGATCGTCCCTCATTTTCTTTATTGTTACTTTGTGTGATTTATT
391 GGACAATTGTGAGATACATTTCGATCGTCCCTCATTTTCTTTATTGTTACTTTGTGTGATTTATT
983606 TTATACAACTTTATTTCACTTGTTGCCGTACTAACATATTTTAATTATGATGATTATTTGAATCC
456 TTATACAACTTTATTTCACTTGTTGCCGTACTAACATATTTTAATTATGATGATTATTTGAATCC
* *
983671 ATATTTTCAAAATTTGTTTACAAAAATTGTAAAGGAAGTGTTCCATGTCAGTATCTCTCTAGTGC
521 ATATTTTCAAAATTTGTTTACAAAAATTGTAAAGGCAGTGTTCCATGTCAGTATCTCTCCAGTGC
983736 TTGACACGGAATACCCAGTTTTCAAAGTAAAATTTAGAGCTCATTTTATATCTCTATGTTCCCCA
586 TTGACACGGAATACCCAGTTTTCAAAGTAAAATTTAGAGCTCATTTTATATCTCTATGTTCCCCA
983801 TCTCTCCGAGGTGCATATGAGATTAAAATTGTTATCAAACCTGGATTTATTTTTGTACAAAATTC
651 TCTCTCCGAGGTGCATATGAGATTAAAATTGTTATCAAACCTGGATTTATTTTTGTACAAAATTC
983866 ATGCAGTCAAGGGGATCATATTGAAATAATATCGAGTCGAAACCAATGAAACCGATGTCAAGTCA
716 ATGCAGTCAAGGGGATCATATTGAAATAATATCGAGTCGAAACCAATGAAACCGATGTCAAGTCA
983931 AAATGTAGCTAGTAAGGTACTGATTTCGGGCGTCGCGAGGAGGTTCATACCTTTTTGCACGTAAC
781 AAATGTAGCTAGTAAGGTACTGATTTCGGGCGTCGCGAGGAGGTTCATACCTTTTTGCACGTAAC
983996 CAACTCCCAGACCCAATCGATGAATCTTTGAAGTACGTGGACCACGGGATCGATGTCTCGAGTTT
846 CAACTCCCAGACCCAATCGATGAATCTTTGAAGTACGTGGACCACGGGATCGATGTCTCGAGTTT
984061 CGTAACTCAAGATATAGGTTTCAATAGGCATCTGATCATGCCTAGCCTAAAATGATCAGTGGCGA
911 CGTAACTCAAGATATAGGTTTCAATAGGCATCTGATCATGCCTAGCCTAAAATGATCAGTGGCGA
984126 CTCCAAAA
976 CTCCAAAA
984134 TTTGAAACCATTTATAGACTTCTCATTGACCATGTCAAGGCACAAATGCTTTTACAACTTTATTG
1 TTTGAAACCATTTATAGACTTCTCATTGACCATGTCAAGGCACAAATGCTTTTACAACTTTATTG
984199 TCCTTATTCACTTCAATTTTCTTTATATAAAATCAAAATTTTTATTCATCGGGAATACTCCTACC
66 TCCTTATTCACTTCAATTTTCTTTATATAAAATCAAAATTTTTATTCATCGGGAATACTCCTACC
984264 CCATTCCTCTGAGAGAATACTCCAACCCCGTTTTTAAACTTGTCGGGATTCAAATCTTATTCTCG
131 CCATTCCTCTGAGAGAATACTCCAACCCCGTTTTTAAACTTGTCGGGATTCAAATCTTATTCTCG
984329 CTTAAATTGTCATCATCGAGGACACTCAACCCCATTCCTCCGAGGGGATACTCCAACCCTATTTT
196 CTTAAATTGTCATCATCGAGGACACTCAACCCCATTCCTCCGAGGGGATACTCCAACCCTATTTT
*
984394 TTTTCAATCAAAAATTGAATCATTTTCTCTATCCCAAATTTTGAGTCATGCTTGTCTTTAAACTT
261 TTTTCAATCAAAAATTGAATCATTTTCTCTATCCCAAATTTTGAGTCATGCTTGTCTTTGAACTT
*
984459 CACCCAATCAATGAATCTAGACAAGTCTCCAATATTGTCAATTTGGTTATTTTTTTTATAATCGA
326 CACCCAATCAATGAATCTAGACACGTCTCCAATATTGTCAATTTGGTTATTTTTTTTATAATCGA
984524 GGACAATTGTGAGATACATTTCGATCGTCCCTCATTTTCTTTATTGTTACTTTGTGTGATTTATT
391 GGACAATTGTGAGATACATTTCGATCGTCCCTCATTTTCTTTATTGTTACTTTGTGTGATTTATT
*
984589 TTATACAACTTTATTTCACTTGTTGTCGTACTAACATATTTTAATTATGATGATTATTTGAATCC
456 TTATACAACTTTATTTCACTTGTTGCCGTACTAACATATTTTAATTATGATGATTATTTGAATCC
984654 ATATTTTCAAAATTTGTTTACAAAAATTGTAAAGGCAGTGTTCCATGTCAGTATCTCTCCAGTGC
521 ATATTTTCAAAATTTGTTTACAAAAATTGTAAAGGCAGTGTTCCATGTCAGTATCTCTCCAGTGC
984719 TTGACACGGAATACCCAGTTTTCAAAGTAAAATTTAGAGCTCATTTTATATCTCTATGTTCCCCA
586 TTGACACGGAATACCCAGTTTTCAAAGTAAAATTTAGAGCTCATTTTATATCTCTATGTTCCCCA
984784 TCTCTCCGAGGTGCATATGAGATTAAAATTGTTATCAAACCTGGATTTATTTTTGTACAAAATTC
651 TCTCTCCGAGGTGCATATGAGATTAAAATTGTTATCAAACCTGGATTTATTTTTGTACAAAATTC
984849 ATGCAGTCAAGGGGATCATATTGAAATAATATCGAGTCGAAACCAATGAAACCGATGTCAAGTCA
716 ATGCAGTCAAGGGGATCATATTGAAATAATATCGAGTCGAAACCAATGAAACCGATGTCAAGTCA
*
984914 AAATGTAGCTAGTAAGGTACTGATTTCGGGCGTCGCGAGGAGGTTCATACCTTTTTGCACATAAC
781 AAATGTAGCTAGTAAGGTACTGATTTCGGGCGTCGCGAGGAGGTTCATACCTTTTTGCACGTAAC
984979 CAACTCCCAGACCCAATCGATGAATCTTTGAAGTACGTGGACCACGGGATCGATGTCTCGAGTTT
846 CAACTCCCAGACCCAATCGATGAATCTTTGAAGTACGTGGACCACGGGATCGATGTCTCGAGTTT
985044 CGTAACTCAAGATATAGGTTTCAATAGGCATCTGATCATGCCTAGCCTAAAATGATCAGTGGCGA
911 CGTAACTCAAGATATAGGTTTCAATAGGCATCTGATCATGCCTAGCCTAAAATGATCAGTGGCGA
985109 CTCCAAAA
976 CTCCAAAA
985117 TTTGAAACCATTTATAGACTTCTCATTGACCATGTCAAGGCACAAATGCTTTTACAACTTTATTG
1 TTTGAAACCATTTATAGACTTCTCATTGACCATGTCAAGGCACAAATGCTTTTACAACTTTATTG
985182 TCCTTATTCACTTCAATTTTCTTTATATAAAATCAAAATTTTTATTCATCGGGAATACTCCTACC
66 TCCTTATTCACTTCAATTTTCTTTATATAAAATCAAAATTTTTATTCATCGGGAATACTCCTACC
985247 CCATTCCTCTGAGAGAATACTCCAACCCCGTTTTTAAACTTGTCGGGATTCAAATCTTATTCTCG
131 CCATTCCTCTGAGAGAATACTCCAACCCCGTTTTTAAACTTGTCGGGATTCAAATCTTATTCTCG
985312 CTTAAATTGTCATCATCGAGGACACTCAACCCCATTCCTCCGAGGGGATACTCCAACCCTATTTT
196 CTTAAATTGTCATCATCGAGGACACTCAACCCCATTCCTCCGAGGGGATACTCCAACCCTATTTT
985377 TTTTCAATCAAAAATTGAATCATTTTCTCTATCCCAAATTTTGAGTCATGCTTGTCTTTGAACTT
261 TTTTCAATCAAAAATTGAATCATTTTCTCTATCCCAAATTTTGAGTCATGCTTGTCTTTGAACTT
985442 CACCCAATCAATGAATCTAGACACGTCTCCAATATTGTCAATTTGGTTATTTTTTTTATAATCGA
326 CACCCAATCAATGAATCTAGACACGTCTCCAATATTGTCAATTTGGTTATTTTTTTTATAATCGA
985507 GGACAATTGTGAGATACATTTCGATCGTCCCTCATTTTCTTTATTGTTACTTTGTGTGATTTATT
391 GGACAATTGTGAGATACATTTCGATCGTCCCTCATTTTCTTTATTGTTACTTTGTGTGATTTATT
985572 TTATACAACTTTATTTCACTTGTTGCCGTACTAACATATTTTAATTATGATGATTATTTGAATCC
456 TTATACAACTTTATTTCACTTGTTGCCGTACTAACATATTTTAATTATGATGATTATTTGAATCC
985637 ATATTTTCAAAATTTGTTTACAAAAATTGTAAAGGCAGTGTTCCATGTCAGTATCTCTCCAGTGC
521 ATATTTTCAAAATTTGTTTACAAAAATTGTAAAGGCAGTGTTCCATGTCAGTATCTCTCCAGTGC
*
985702 TTGACACGGAATACCCAGTTTTCAAAGTCAAATTTAGAGCTCATTTTATATCTCTATGTTCCCCA
586 TTGACACGGAATACCCAGTTTTCAAAGTAAAATTTAGAGCTCATTTTATATCTCTATGTTCCCCA
985767 TCTCTCCGAGGTGCATATGAGATTAAAATTGTTATCAAACCTGGATTTATTTTTGTACAAAATTC
651 TCTCTCCGAGGTGCATATGAGATTAAAATTGTTATCAAACCTGGATTTATTTTTGTACAAAATTC
985832 ATGCAGTCAAGGGGATCATATTGAAATAATATCGAGTCGAAACCAATGAAACCGATGTCAAGTCA
716 ATGCAGTCAAGGGGATCATATTGAAATAATATCGAGTCGAAACCAATGAAACCGATGTCAAGTCA
985897 AAATGTAGCTAGTAAGGTACTGATTTCGGGCGTCGCGAGGAGGTTCATACCTTTTTGCACGTAAC
781 AAATGTAGCTAGTAAGGTACTGATTTCGGGCGTCGCGAGGAGGTTCATACCTTTTTGCACGTAAC
985962 CAACTCCCAGACCCAATCGATGAATCTTTGAAGTACGTGGACCACGGGATCGATGTCTCGAGTTT
846 CAACTCCCAGACCCAATCGATGAATCTTTGAAGTACGTGGACCACGGGATCGATGTCTCGAGTTT
986027 CGTAACTCAAGATATAGGTTTCAATAGGCATCTGATCATGCCTAGCCTAAAATGATCAGTGGCGA
911 CGTAACTCAAGATATAGGTTTCAATAGGCATCTGATCATGCCTAGCCTAAAATGATCAGTGGCGA
986092 CTCCAAAA
976 CTCCAAAA
986100 TTTGAAACCATTTATAGACTTCTCATTGACCATGTCAAGGCACAAATGCTTTTACAACTTTATTG
1 TTTGAAACCATTTATAGACTTCTCATTGACCATGTCAAGGCACAAATGCTTTTACAACTTTATTG
986165 TCCTTATTCACTTCAATTTTCTTTATATAAAATCAAAATTTTTATTCATCGGGAATACTCCTACC
66 TCCTTATTCACTTCAATTTTCTTTATATAAAATCAAAATTTTTATTCATCGGGAATACTCCTACC
* *
986230 CCATTCCTCTGAGAGAATACTCCAACCCCGTCTTTAAACTTGTCGAGATTCAAATCTTATTCTCG
131 CCATTCCTCTGAGAGAATACTCCAACCCCGTTTTTAAACTTGTCGGGATTCAAATCTTATTCTCG
986295 CTTAAATTGTCATCATCGAGGACACTCAACCCCATTCCTCCGAGGGGATACTCCAACCCTATTTT
196 CTTAAATTGTCATCATCGAGGACACTCAACCCCATTCCTCCGAGGGGATACTCCAACCCTATTTT
986360 TTTTCAATCAAAAATTGAATCATTTTCTCTATCCCAAATTTTGAGTCATGCTTGTCTTTGAACTT
261 TTTTCAATCAAAAATTGAATCATTTTCTCTATCCCAAATTTTGAGTCATGCTTGTCTTTGAACTT
986425 CACCCAATCAATGAATCTAGACACGTCTCCAATATTGTCAATTTGGTTATTTTTTTTATAATCGA
326 CACCCAATCAATGAATCTAGACACGTCTCCAATATTGTCAATTTGGTTATTTTTTTTATAATCGA
*
986490 GGACAATTGTGAGATACATTTCGATCGTCCCTTATTTTCTTTATTGTTACTTTGTGTGATTTATT
391 GGACAATTGTGAGATACATTTCGATCGTCCCTCATTTTCTTTATTGTTACTTTGTGTGATTTATT
986555 TTATACAACTTTATTTCACTTGTTGCCGTACTAACATATTTTAATTATGATGATTATTTGAATCC
456 TTATACAACTTTATTTCACTTGTTGCCGTACTAACATATTTTAATTATGATGATTATTTGAATCC
*
986620 ATATTTTCAAAATTTGTTTACAAAAATTGTAAAGGCAGTGTTCCATGTCAATATCTCTCCAGTGC
521 ATATTTTCAAAATTTGTTTACAAAAATTGTAAAGGCAGTGTTCCATGTCAGTATCTCTCCAGTGC
986685 TTGACACGGAATACCCAGTTTTCAAAGTAAAATTTAGAGCTCATTTTATATCTCTATGTTCCCCA
586 TTGACACGGAATACCCAGTTTTCAAAGTAAAATTTAGAGCTCATTTTATATCTCTATGTTCCCCA
986750 TCTCTCCGAGGTGCATATGAGATTAAAATTGTTATCAAACCTGGATTTATTTTTGTACAAAATTC
651 TCTCTCCGAGGTGCATATGAGATTAAAATTGTTATCAAACCTGGATTTATTTTTGTACAAAATTC
986815 ATGCAGTCAAGGGGATCATATTGAAATAATATCGAGTCGAAACCAATGAAACCGATGTCAAGTCA
716 ATGCAGTCAAGGGGATCATATTGAAATAATATCGAGTCGAAACCAATGAAACCGATGTCAAGTCA
986880 AAATGTAGCTAGTAAGGTACTGATTTCGGGCGTCGCGAGGAGGTTCATACCTTTTTGCACGTAAC
781 AAATGTAGCTAGTAAGGTACTGATTTCGGGCGTCGCGAGGAGGTTCATACCTTTTTGCACGTAAC
986945 CAACTCCCAGACCCAATCGATGAATCTTTGAAGTACGTGGACCACGGGATCGATGTCTCGAGTTT
846 CAACTCCCAGACCCAATCGATGAATCTTTGAAGTACGTGGACCACGGGATCGATGTCTCGAGTTT
*
987010 CGTAACTCAAGATATAGGTTTCAATAGGCATCCGATCATGCCTAGCCTAAAATGATCAGTGGCGA
911 CGTAACTCAAGATATAGGTTTCAATAGGCATCTGATCATGCCTAGCCTAAAATGATCAGTGGCGA
987075 CTCCAAAA
976 CTCCAAAA
987083 TTTGAAACCATTTATAGACTTCTCATTGACCATGTCAAGGCACAAATGCTTTTACAACTTTATTG
1 TTTGAAACCATTTATAGACTTCTCATTGACCATGTCAAGGCACAAATGCTTTTACAACTTTATTG
987148 TCCTTATTCACTTCAATTTTCTTTATATAAAATCAAAATTTTTATTCATCGGGAATACTCCTACC
66 TCCTTATTCACTTCAATTTTCTTTATATAAAATCAAAATTTTTATTCATCGGGAATACTCCTACC
987213 CCATTCCTCTGAGAGAATACTCCAACCCCGTTTTTAAACTTGTCGGGATTCAAATCTTATTCTCG
131 CCATTCCTCTGAGAGAATACTCCAACCCCGTTTTTAAACTTGTCGGGATTCAAATCTTATTCTCG
987278 CTTAAATTGTCATCATCGAGGACACTCAACCCCATTCCTCCGAGGGGATACTCCAACCCTATTTT
196 CTTAAATTGTCATCATCGAGGACACTCAACCCCATTCCTCCGAGGGGATACTCCAACCCTATTTT
*
987343 TTTTCAATCAAAAATTGAATCATTTTCTCTATCCCAAATTTTGAGTCATGCTTGTCTTTAAACTT
261 TTTTCAATCAAAAATTGAATCATTTTCTCTATCCCAAATTTTGAGTCATGCTTGTCTTTGAACTT
*
987408 CACCCAATCAATGAATCTAGACAAGTCTCCAATATTGTCAATTTGGTTATTTTTTTTATAATCGA
326 CACCCAATCAATGAATCTAGACACGTCTCCAATATTGTCAATTTGGTTATTTTTTTTATAATCGA
987473 GGACAATTGTGAGATACATTTCGATCGTCCCTCATTTTCTTTATTGTTACTTTGTGTGATTTATT
391 GGACAATTGTGAGATACATTTCGATCGTCCCTCATTTTCTTTATTGTTACTTTGTGTGATTTATT
*
987538 TTATACAACTTTATTTCACTTGTTGTCGTACTAACATATTTTAATTATGATGATTATTTGAATCC
456 TTATACAACTTTATTTCACTTGTTGCCGTACTAACATATTTTAATTATGATGATTATTTGAATCC
987603 ATATTTTCAAAATTTGTTTACAAAAATTGTAAAGGCAGTGTTCCATGTCAGTATCTCTCCAGTGC
521 ATATTTTCAAAATTTGTTTACAAAAATTGTAAAGGCAGTGTTCCATGTCAGTATCTCTCCAGTGC
987668 TTGACACGGAATACCCAGTTTTCAAAGTAAAATTTAGAGCTCATTTTATATCTCTATGTTCCCCA
586 TTGACACGGAATACCCAGTTTTCAAAGTAAAATTTAGAGCTCATTTTATATCTCTATGTTCCCCA
987733 TCTCTCCGAGGTGCATATGAGATTAAAATTGTTATCAAACCTGGATTTATTTTTGTACAAAATTC
651 TCTCTCCGAGGTGCATATGAGATTAAAATTGTTATCAAACCTGGATTTATTTTTGTACAAAATTC
987798 ATGCAGTCAAGGGGATCATATTGAAATAATATCGAGTCGAAACCAATGAAACCGATGTCAAGTCA
716 ATGCAGTCAAGGGGATCATATTGAAATAATATCGAGTCGAAACCAATGAAACCGATGTCAAGTCA
987863 AAATGTAGCTAGTAAGGTACTGATTTCGGGCGTCGCGAGGAGGTTCATACCTTTTTGCACGTAAC
781 AAATGTAGCTAGTAAGGTACTGATTTCGGGCGTCGCGAGGAGGTTCATACCTTTTTGCACGTAAC
987928 CAACTCCCAGACCCAATCGATGAATCTTTGAAGTACGTGGACCACGGGATCGATGTCTCGAGTTT
846 CAACTCCCAGACCCAATCGATGAATCTTTGAAGTACGTGGACCACGGGATCGATGTCTCGAGTTT
987993 CGTAACTCAAGATATAGGTTTCAATAGGCATCTGATCATGCCTAGCCTAAAATGATCAGTGGCGA
911 CGTAACTCAAGATATAGGTTTCAATAGGCATCTGATCATGCCTAGCCTAAAATGATCAGTGGCGA
988058 CTCCAAAA
976 CTCCAAAA
988066 TTTGAAACCATTTATAGACTTCTCATTGACCATGTCAAGGCACAAATGCTTTTACAACTTTATTG
1 TTTGAAACCATTTATAGACTTCTCATTGACCATGTCAAGGCACAAATGCTTTTACAACTTTATTG
*
988131 TCCTTATTCACTTCAATTTTCTTTATGTAAAATCAAAATTTTTATTCATCGGGAATACTCCTACC
66 TCCTTATTCACTTCAATTTTCTTTATATAAAATCAAAATTTTTATTCATCGGGAATACTCCTACC
* *
988196 CCATTCCTCTGAGAGAATACTCCAACCCCGTCTTTAAACTTGTCGAGATTCAAATCTTATTCTCG
131 CCATTCCTCTGAGAGAATACTCCAACCCCGTTTTTAAACTTGTCGGGATTCAAATCTTATTCTCG
988261 CTTAAATTGTCATCATCGAGGACACTCAACCCCATTCCTCCGAGGGGATACTCCAACCCTATTTT
196 CTTAAATTGTCATCATCGAGGACACTCAACCCCATTCCTCCGAGGGGATACTCCAACCCTATTTT
988326 TTTTCAATCAAAAATTGAATCATTTTCTCTATCCCAAATTTTGAGTCATGCTTGTCTTTGAACTT
261 TTTTCAATCAAAAATTGAATCATTTTCTCTATCCCAAATTTTGAGTCATGCTTGTCTTTGAACTT
988391 CACCCAATCAATGAATCTAGACACGTCTCCAATATTGTCAATTTGGTTATTTTTTTTATAATCGA
326 CACCCAATCAATGAATCTAGACACGTCTCCAATATTGTCAATTTGGTTATTTTTTTTATAATCGA
*
988456 GGACAATTGTGAGATACATTTCGATCGTCCCTTATTTTCTTTATTGTTACTTTGTGTGATTTATT
391 GGACAATTGTGAGATACATTTCGATCGTCCCTCATTTTCTTTATTGTTACTTTGTGTGATTTATT
988521 TTATACAACTTTATTTCACTTGTTGCCGTACTAACATATTTTAATTATGATGATTATTTGAATCC
456 TTATACAACTTTATTTCACTTGTTGCCGTACTAACATATTTTAATTATGATGATTATTTGAATCC
*
988586 ATATTTTCAAAATTTGTTTACAAAAATTGTAAAGGCAGTGTTCCATGTCAATATCTCTCCAGTGC
521 ATATTTTCAAAATTTGTTTACAAAAATTGTAAAGGCAGTGTTCCATGTCAGTATCTCTCCAGTGC
988651 TTGACACGGAATACCCAGTTTTCAAAGTAAAATTTAGAGCTCATTTTATATCTCTATGTTCCCCA
586 TTGACACGGAATACCCAGTTTTCAAAGTAAAATTTAGAGCTCATTTTATATCTCTATGTTCCCCA
988716 TCTCTCCGAGGTGCATATGAGATTAAAATTGTTATCAAACCTGGATTTATTTTTGTACAAAATTC
651 TCTCTCCGAGGTGCATATGAGATTAAAATTGTTATCAAACCTGGATTTATTTTTGTACAAAATTC
988781 ATGCAGTCAAGGGGATCATATTGAAATAATATCGAGTCGAAACCAATGAAACCGATGTCAAGTCA
716 ATGCAGTCAAGGGGATCATATTGAAATAATATCGAGTCGAAACCAATGAAACCGATGTCAAGTCA
988846 AAATGTAGCTAGTAAGGTACTGATTTCGGGCGTCGCGAGGAGGTTCATACCTTTTTGCACGTAAC
781 AAATGTAGCTAGTAAGGTACTGATTTCGGGCGTCGCGAGGAGGTTCATACCTTTTTGCACGTAAC
988911 CAACTCCCAGACCCAATCGATGAATCTTTGAAGTACGTGGACCACGGGATCGATGTCTCGAGTTT
846 CAACTCCCAGACCCAATCGATGAATCTTTGAAGTACGTGGACCACGGGATCGATGTCTCGAGTTT
*
988976 CGTAACTCAAGATATAGGTTTCAATAGGCATCCGATCATGCCTAGCCTAAAATGATCAGTGGCGA
911 CGTAACTCAAGATATAGGTTTCAATAGGCATCTGATCATGCCTAGCCTAAAATGATCAGTGGCGA
989041 CTCCAAAA
976 CTCCAAAA
989049 TTTGAAACCATTTATAGACTTCTCATTGACCATGTCAAGGCACAAATGCTTTTACAACTTTATTG
1 TTTGAAACCATTTATAGACTTCTCATTGACCATGTCAAGGCACAAATGCTTTTACAACTTTATTG
989114 TCCTTATTCACTTCAATTTTCTTTATATAAAATCAAAATTTTTATTCATCGGGAATACTCCTACC
66 TCCTTATTCACTTCAATTTTCTTTATATAAAATCAAAATTTTTATTCATCGGGAATACTCCTACC
989179 CCATTCCTCTGAGAGAATACTCCAACCCCGTTTTTAAACTTGTCGGGATTCAAATCTTATTCTCG
131 CCATTCCTCTGAGAGAATACTCCAACCCCGTTTTTAAACTTGTCGGGATTCAAATCTTATTCTCG
989244 CTTAAATTGTCATCATCGAGGACACTCAACCCCATTCCTCCGAGGGGATACTCCAACCCTATTTT
196 CTTAAATTGTCATCATCGAGGACACTCAACCCCATTCCTCCGAGGGGATACTCCAACCCTATTTT
*
989309 TTTTCAATCAAAAATTGAATCATTTTCTCTATCCCAAATTTTGAGTCATGCTTGTCTTTAAACTT
261 TTTTCAATCAAAAATTGAATCATTTTCTCTATCCCAAATTTTGAGTCATGCTTGTCTTTGAACTT
*
989374 CACCCAATCAATGAATCTAGACAAGTCTCCAATATTGTCAATTTGGTTATTTTTTTTATAATCGA
326 CACCCAATCAATGAATCTAGACACGTCTCCAATATTGTCAATTTGGTTATTTTTTTTATAATCGA
989439 GGACAATTGTGAGATACATTTCGATCGTCCCTCATTTTCTTTATTGTTACTTTGTGTGATTTATT
391 GGACAATTGTGAGATACATTTCGATCGTCCCTCATTTTCTTTATTGTTACTTTGTGTGATTTATT
*
989504 TTATACAACTTTATTTCACTTGTTGTCGTACTAACATATTTTAATTATGATGATTATTTGAATCC
456 TTATACAACTTTATTTCACTTGTTGCCGTACTAACATATTTTAATTATGATGATTATTTGAATCC
989569 ATATTTTCAAAATTTGTTTACAAAAATTGTAAAGGCAGTGTTCCATGTCAGTATCTCTCCAGTGC
521 ATATTTTCAAAATTTGTTTACAAAAATTGTAAAGGCAGTGTTCCATGTCAGTATCTCTCCAGTGC
989634 TTGACACGGAATACCCAGTTTTCAAAGTAAAATTTAGAGCTCATTTTATATCTCTATGTTCCCCA
586 TTGACACGGAATACCCAGTTTTCAAAGTAAAATTTAGAGCTCATTTTATATCTCTATGTTCCCCA
989699 TCTCTCCGAGGTGCATATGAGATTAAAATTGTTATCAAACCTGGATTTATTTTTGTACAAAATTC
651 TCTCTCCGAGGTGCATATGAGATTAAAATTGTTATCAAACCTGGATTTATTTTTGTACAAAATTC
989764 ATGCAGTCAAGGGGATCATATTGAAATAATATCGAGTCGAAACCAATGAAACCGATGTCAAGTCA
716 ATGCAGTCAAGGGGATCATATTGAAATAATATCGAGTCGAAACCAATGAAACCGATGTCAAGTCA
*
989829 AAATGTAGCTAGTAAGGTACTGATTTCGGGCGTCGCGAGGAGGTTCATACCTTTTTGCACATAAC
781 AAATGTAGCTAGTAAGGTACTGATTTCGGGCGTCGCGAGGAGGTTCATACCTTTTTGCACGTAAC
989894 CAACTCCCAGACCCAATCGATGAATCTTTGAAGTACGTGGACCACGGGATCGATGTCTCGAGTTT
846 CAACTCCCAGACCCAATCGATGAATCTTTGAAGTACGTGGACCACGGGATCGATGTCTCGAGTTT
989959 CGTAACTCAAGATATAGGTTTCAATAGGCATCTGATCATGCCTAGCCTAAAATGATCAGTGGCGA
911 CGTAACTCAAGATATAGGTTTCAATAGGCATCTGATCATGCCTAGCCTAAAATGATCAGTGGCGA
990024 CTCCAAAA
976 CTCCAAAA
990032 TTTGAAACCATTTATAGACTTCTCATTGACCATGTCAAGGCACAAATGCTTTTACAACTTTATTG
1 TTTGAAACCATTTATAGACTTCTCATTGACCATGTCAAGGCACAAATGCTTTTACAACTTTATTG
990097 TCCTTATTCACTTCAATTTTCTTTATATAAAATCAAAATTTTTATTCATCGGGAATACTCCTACC
66 TCCTTATTCACTTCAATTTTCTTTATATAAAATCAAAATTTTTATTCATCGGGAATACTCCTACC
990162 CCATTCCTCTGAGAGAATACTCCAACCCCGTTTTTAAACTTGTCGGGATTCAAATCTTATTCTCG
131 CCATTCCTCTGAGAGAATACTCCAACCCCGTTTTTAAACTTGTCGGGATTCAAATCTTATTCTCG
990227 CTTAAATTGTCATCATCGAGGACACTCAACCCCATTCCTCCGAGGGGATACTCCAACCCTATTTT
196 CTTAAATTGTCATCATCGAGGACACTCAACCCCATTCCTCCGAGGGGATACTCCAACCCTATTTT
990292 TTTTCAATCAAAAATTGAATCATTTTCTCTATCCCAAATTTTGAGTCATGCTTGTCTTTGAACTT
261 TTTTCAATCAAAAATTGAATCATTTTCTCTATCCCAAATTTTGAGTCATGCTTGTCTTTGAACTT
990357 CACCCAATCAATGAATCTAGACACGTCTCCAATATTGTCAATTTGGTTATTTTTTTTATAATCGA
326 CACCCAATCAATGAATCTAGACACGTCTCCAATATTGTCAATTTGGTTATTTTTTTTATAATCGA
990422 GGACAATTGTGAGATACATTTCGATCGTCCCTCATTTTCTTTATTGTTACTTTGTGTGATTTATT
391 GGACAATTGTGAGATACATTTCGATCGTCCCTCATTTTCTTTATTGTTACTTTGTGTGATTTATT
990487 TTATACAACTTTATTTCACTTGTTGCCGTACTAACATATTTTAATTATGATGATTATTTGAATCC
456 TTATACAACTTTATTTCACTTGTTGCCGTACTAACATATTTTAATTATGATGATTATTTGAATCC
990552 ATATTTTCAAAATTTGTTTACAAAAATTGTAAAGGCAGTGTTCCATGTCAGTATCTCTCCAGTGC
521 ATATTTTCAAAATTTGTTTACAAAAATTGTAAAGGCAGTGTTCCATGTCAGTATCTCTCCAGTGC
*
990617 TTGACACGGAATACCCAGTTTTCAAAGTCAAATTTAGAGCTCATTTTATATCTCTATGTTCCCCA
586 TTGACACGGAATACCCAGTTTTCAAAGTAAAATTTAGAGCTCATTTTATATCTCTATGTTCCCCA
990682 TCTCTCCGAGGTGCATATGAGATTAAAATTGTTATCAAACCTGGATTTATTTTTGTACAAAATTC
651 TCTCTCCGAGGTGCATATGAGATTAAAATTGTTATCAAACCTGGATTTATTTTTGTACAAAATTC
990747 ATGCAGTCAAGGGGATCATATTGAAATAATATCGAGTCGAAACCAATGAAACCGATGTCAAGTCA
716 ATGCAGTCAAGGGGATCATATTGAAATAATATCGAGTCGAAACCAATGAAACCGATGTCAAGTCA
990812 AAATGTAGCTAGTAAGGTACTGATTTCGGGCGTCGCGAGGAGGTTCATACCTTTTTGCACGTAAC
781 AAATGTAGCTAGTAAGGTACTGATTTCGGGCGTCGCGAGGAGGTTCATACCTTTTTGCACGTAAC
990877 CAACTCCCAGACCCAATCGATGAATCTTTGAAGTACGTGGACCACGGGATCGATGTCTCGAGTTT
846 CAACTCCCAGACCCAATCGATGAATCTTTGAAGTACGTGGACCACGGGATCGATGTCTCGAGTTT
990942 CGTAACTCAAGATATAGGTTTCAATAGGCATCTGATCATGCCTAGCCTAAAATGATCAGTGGCGA
911 CGTAACTCAAGATATAGGTTTCAATAGGCATCTGATCATGCCTAGCCTAAAATGATCAGTGGCGA
991007 CTCCAAAA
976 CTCCAAAA
991015 TTTGAAACCATTTATAGACTTCTCATTGACCATGTCAAGGCACAAATGCTTTTACAACTTTATTG
1 TTTGAAACCATTTATAGACTTCTCATTGACCATGTCAAGGCACAAATGCTTTTACAACTTTATTG
991080 TCCTTATTCACTTCAATTTTCTTTATATAAAATCAAAATTTTTATTCATCGGGAATACTCCTACC
66 TCCTTATTCACTTCAATTTTCTTTATATAAAATCAAAATTTTTATTCATCGGGAATACTCCTACC
* *
991145 CCATTCCTCTGAGAGAATACTCCAACCCCGTCTTTAAACTTGTCGAGATTCAAATCTTATTCTCG
131 CCATTCCTCTGAGAGAATACTCCAACCCCGTTTTTAAACTTGTCGGGATTCAAATCTTATTCTCG
991210 CTTAAATTGTCATCATCGAGGACACTCAACCCCATTCCTCCGAGGGGATACTCCAACCCTATTTT
196 CTTAAATTGTCATCATCGAGGACACTCAACCCCATTCCTCCGAGGGGATACTCCAACCCTATTTT
991275 TTTTCAATCAAAAATTGAATCATTTTCTCTATCCCAAATTTTGAGTCATGCTTGTCTTTGAACTT
261 TTTTCAATCAAAAATTGAATCATTTTCTCTATCCCAAATTTTGAGTCATGCTTGTCTTTGAACTT
991340 CACCCAATCAATGAATCTAGACACGTCTCCAATATTGTCAATTTGGTTATTTTTTTTATAATCGA
326 CACCCAATCAATGAATCTAGACACGTCTCCAATATTGTCAATTTGGTTATTTTTTTTATAATCGA
*
991405 GGACAATTGTGAGATACATTTCGATCGTCCCTTATTTTCTTTATTGTTACTTTGTGTGATTTATT
391 GGACAATTGTGAGATACATTTCGATCGTCCCTCATTTTCTTTATTGTTACTTTGTGTGATTTATT
991470 TTATACAACTTTATTTCACTTGTTGCCGTACTAACATATTTTAATTATGATGATTATTTGAATCC
456 TTATACAACTTTATTTCACTTGTTGCCGTACTAACATATTTTAATTATGATGATTATTTGAATCC
*
991535 ATATTTTCAAAATTTGTTTACAAAAATTGTAAAGGCAGTGTTCCATGTCAATATCTCTCCAGTGC
521 ATATTTTCAAAATTTGTTTACAAAAATTGTAAAGGCAGTGTTCCATGTCAGTATCTCTCCAGTGC
991600 TTGACACGGAATACCCAGTTTTCAAAGTAAAATTTAGAGCTCATTTTATATCTCTATGTTCCCCA
586 TTGACACGGAATACCCAGTTTTCAAAGTAAAATTTAGAGCTCATTTTATATCTCTATGTTCCCCA
991665 TCTCTCCGAGGTGCATATGAGATTAAAATTGTTATCAAACCTGGATTTATTTTTGTACAAAATTC
651 TCTCTCCGAGGTGCATATGAGATTAAAATTGTTATCAAACCTGGATTTATTTTTGTACAAAATTC
991730 ATGCAGTCAAGGGGATCATATTGAAATAATATCGAGTCGAAACCAATGAAACCGATGTCAAGTCA
716 ATGCAGTCAAGGGGATCATATTGAAATAATATCGAGTCGAAACCAATGAAACCGATGTCAAGTCA
991795 AAATGTAGCTAGTAAGGTACTGATTTCGGGCGTCGCGAGGAGGTTCATACCTTTTTGCACGTAAC
781 AAATGTAGCTAGTAAGGTACTGATTTCGGGCGTCGCGAGGAGGTTCATACCTTTTTGCACGTAAC
991860 CAACTCCCAGACCCAATCGATGAATCTTTGAAGTACGTGGACCACGGGATCGATGTCTCGAGTTT
846 CAACTCCCAGACCCAATCGATGAATCTTTGAAGTACGTGGACCACGGGATCGATGTCTCGAGTTT
*
991925 CGTAACTCAAGATATAGGTTTCAATAGGCATCCGATCATGCCTAGCCTAAAATGATCAGTGGCGA
911 CGTAACTCAAGATATAGGTTTCAATAGGCATCTGATCATGCCTAGCCTAAAATGATCAGTGGCGA
991990 CTCCAAAA
976 CTCCAAAA
991998 TTTGAAACCATTTATAGACTTCTCATTGACCATGTCAAGGCACAAATGCTTTTACAACTTTATTG
1 TTTGAAACCATTTATAGACTTCTCATTGACCATGTCAAGGCACAAATGCTTTTACAACTTTATTG
*
992063 TCCTTATTCACTTCAATTTTCTTTATATAAAATCAAAATTTTTATTCATCGGGAATACTCCAACC
66 TCCTTATTCACTTCAATTTTCTTTATATAAAATCAAAATTTTTATTCATCGGGAATACTCCTACC
992128 CCATTCCTCTGAGAGAATACTCCAACCCCGTTTTTAAACTTGTCGGGATTCAAATCTTATTCTCG
131 CCATTCCTCTGAGAGAATACTCCAACCCCGTTTTTAAACTTGTCGGGATTCAAATCTTATTCTCG
992193 CTTAAATTGTCATCATCGAGGACACTCAACCCCATTCCTCCGAGGGGATACTCCAACCCTATTTT
196 CTTAAATTGTCATCATCGAGGACACTCAACCCCATTCCTCCGAGGGGATACTCCAACCCTATTTT
992258 TTTTCAATCAAAAATTGAATCATTTTCTCTATCCCAAATTTTGAGTCATGCTTGTCTTTGAACTT
261 TTTTCAATCAAAAATTGAATCATTTTCTCTATCCCAAATTTTGAGTCATGCTTGTCTTTGAACTT
*
992323 CACCCAATCAATGAATCTAGACACGTCTCCAATATTGTCAGTTTGGTTATTTTTTTTATAATCGA
326 CACCCAATCAATGAATCTAGACACGTCTCCAATATTGTCAATTTGGTTATTTTTTTTATAATCGA
992388 GGACAATTGTGAGATACATTTCGATCGTCCCTCATTTTCTTTATTGTTACTTTGTGTGATTTATT
391 GGACAATTGTGAGATACATTTCGATCGTCCCTCATTTTCTTTATTGTTACTTTGTGTGATTTATT
992453 TTATACAACTTTATTTCACTTGTTGCCGTACTAACATATTTTAATTATGATGATTATTTGAATCC
456 TTATACAACTTTATTTCACTTGTTGCCGTACTAACATATTTTAATTATGATGATTATTTGAATCC
* *
992518 AAATTTTCAAAATTTGTTTACAAAAATTGTAAAGGCAGTATTCCATGTCAGTATCTCTCCAGTGC
521 ATATTTTCAAAATTTGTTTACAAAAATTGTAAAGGCAGTGTTCCATGTCAGTATCTCTCCAGTGC
*
992583 TTGACACGGAATACCCAGTTTTCAAAGTAAAATTTAGAGCTCATTTTATATCTCTATGTTTCCCA
586 TTGACACGGAATACCCAGTTTTCAAAGTAAAATTTAGAGCTCATTTTATATCTCTATGTTCCCCA
992648 TCTCTCCGAGGTGCATATGAGATTAAAATTGTTATCAAACCTGGATTTATTTTTGTACAAAATTC
651 TCTCTCCGAGGTGCATATGAGATTAAAATTGTTATCAAACCTGGATTTATTTTTGTACAAAATTC
992713 ATGCAGTCAAGGGGATCATATTGAAATAATATCGAGTCGAAACCAATGAAACCGATGTCAAGTCA
716 ATGCAGTCAAGGGGATCATATTGAAATAATATCGAGTCGAAACCAATGAAACCGATGTCAAGTCA
992778 AAATGTAGCTAGTAAGGTACTGATTTCGGGCGTCGCGAGGAGGTTCATACCTTTTTGCACGTAAC
781 AAATGTAGCTAGTAAGGTACTGATTTCGGGCGTCGCGAGGAGGTTCATACCTTTTTGCACGTAAC
992843 CAACTCCCAGACCCAATCGATGAATCTTTGAAGTACGTGGACCACGGGATCGATGTCTCGAGTTT
846 CAACTCCCAGACCCAATCGATGAATCTTTGAAGTACGTGGACCACGGGATCGATGTCTCGAGTTT
* *
992908 CGTAACTCAAGATATAGGTTTCAATAGGCATCCGATCATGCCTAGCCTAAAATGATTAGTGGCGA
911 CGTAACTCAAGATATAGGTTTCAATAGGCATCTGATCATGCCTAGCCTAAAATGATCAGTGGCGA
992973 CTCCAAAA
976 CTCCAAAA
992981 TTT
1 TTT
992984 TAGTCACTTC
Statistics
Matches: 9757, Mismatches: 76, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
983 9757 1.00
ACGTcount: A:0.29, C:0.20, G:0.15, T:0.35
Consensus pattern (983 bp):
TTTGAAACCATTTATAGACTTCTCATTGACCATGTCAAGGCACAAATGCTTTTACAACTTTATTG
TCCTTATTCACTTCAATTTTCTTTATATAAAATCAAAATTTTTATTCATCGGGAATACTCCTACC
CCATTCCTCTGAGAGAATACTCCAACCCCGTTTTTAAACTTGTCGGGATTCAAATCTTATTCTCG
CTTAAATTGTCATCATCGAGGACACTCAACCCCATTCCTCCGAGGGGATACTCCAACCCTATTTT
TTTTCAATCAAAAATTGAATCATTTTCTCTATCCCAAATTTTGAGTCATGCTTGTCTTTGAACTT
CACCCAATCAATGAATCTAGACACGTCTCCAATATTGTCAATTTGGTTATTTTTTTTATAATCGA
GGACAATTGTGAGATACATTTCGATCGTCCCTCATTTTCTTTATTGTTACTTTGTGTGATTTATT
TTATACAACTTTATTTCACTTGTTGCCGTACTAACATATTTTAATTATGATGATTATTTGAATCC
ATATTTTCAAAATTTGTTTACAAAAATTGTAAAGGCAGTGTTCCATGTCAGTATCTCTCCAGTGC
TTGACACGGAATACCCAGTTTTCAAAGTAAAATTTAGAGCTCATTTTATATCTCTATGTTCCCCA
TCTCTCCGAGGTGCATATGAGATTAAAATTGTTATCAAACCTGGATTTATTTTTGTACAAAATTC
ATGCAGTCAAGGGGATCATATTGAAATAATATCGAGTCGAAACCAATGAAACCGATGTCAAGTCA
AAATGTAGCTAGTAAGGTACTGATTTCGGGCGTCGCGAGGAGGTTCATACCTTTTTGCACGTAAC
CAACTCCCAGACCCAATCGATGAATCTTTGAAGTACGTGGACCACGGGATCGATGTCTCGAGTTT
CGTAACTCAAGATATAGGTTTCAATAGGCATCTGATCATGCCTAGCCTAAAATGATCAGTGGCGA
CTCCAAAA
Found at i:997660 original size:79 final size:79
Alignment explanation
Indices: 997514--997683 Score: 189
Period size: 79 Copynumber: 2.2 Consensus size: 79
997504 ACAACGGGGC
* * ** * *
997514 TAGAGTATCCCCTTGAAAATAACGAGGTTGGAGTATCCCCGGTTGTGAAAAATCGATGATTAGGA
1 TAGAGTATCCCCTCGAAAATAACGAGGTGGGAGTATCCCCGACTATAAAAAATCGATGATTAGGA
*
997579 AATAAAATCGGGAT
66 AATAAAACCGGGAT
* * * * * *
997593 TGGAGTATCCCCTCGGAAATAATGGGGTGGGAGTATCCCCGACTATAAAAAATTGATGTTTTA-G
1 TAGAGTATCCCCTCGAAAATAACGAGGTGGGAGTATCCCCGACTATAAAAAATCGATG-ATTAGG
* *
997657 AAATAAAGCCGGGGT
65 AAATAAAACCGGGAT
997672 TAGAGTATCCCC
1 TAGAGTATCCCC
997684 GATGATGAGA
Statistics
Matches: 74, Mismatches: 16, Indels: 2
0.80 0.17 0.02
Matches are distributed among these distances:
79 71 0.96
80 3 0.04
ACGTcount: A:0.33, C:0.16, G:0.26, T:0.25
Consensus pattern (79 bp):
TAGAGTATCCCCTCGAAAATAACGAGGTGGGAGTATCCCCGACTATAAAAAATCGATGATTAGGA
AATAAAACCGGGAT
Found at i:997681 original size:51 final size:51
Alignment explanation
Indices: 997623--997734 Score: 145
Period size: 51 Copynumber: 2.2 Consensus size: 51
997613 AATGGGGTGG
* *
997623 GAGTATCCCCGACT-ATAAAAAATTGATGTTTTAGAAATAAAGCCGGGGTTA
1 GAGTATCCCCGA-TGATAAAAAATTAATATTTTAGAAATAAAGCCGGGGTTA
* * * *
997674 GAGTATCCCCGATGATGAGAAATTAATATTTTAGAAGTAAAGCCGGGGTTG
1 GAGTATCCCCGATGATAAAAAATTAATATTTTAGAAATAAAGCCGGGGTTA
*
997725 GGGTATCCCC
1 GAGTATCCCC
997735 TCGAAAATAA
Statistics
Matches: 53, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
50 1 0.02
51 52 0.98
ACGTcount: A:0.33, C:0.15, G:0.25, T:0.27
Consensus pattern (51 bp):
GAGTATCCCCGATGATAAAAAATTAATATTTTAGAAATAAAGCCGGGGTTA
Found at i:997812 original size:51 final size:49
Alignment explanation
Indices: 997749--997862 Score: 140
Period size: 49 Copynumber: 2.3 Consensus size: 49
997739 AAATAACGAG
* *
997749 GTTGGAGTATCCCCAATGGT-GAAAAGTCGGTGTTTTTGAAATAAAATCGAA
1 GTTGGAGTATCCCCAATGATGGAAAA-T--GTGTTTTAGAAATAAAATCGAA
* * *
997800 GTTGGAGTATCCCCGATTATGGAAAATGTGTTTTAGAAATAAAATCGGA
1 GTTGGAGTATCCCCAATGATGGAAAATGTGTTTTAGAAATAAAATCGAA
*
997849 GTTGAAGTATCCCC
1 GTTGGAGTATCCCC
997863 GATTAAGAGA
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
49 33 0.59
51 18 0.32
52 5 0.09
ACGTcount: A:0.32, C:0.13, G:0.25, T:0.30
Consensus pattern (49 bp):
GTTGGAGTATCCCCAATGATGGAAAATGTGTTTTAGAAATAAAATCGAA
Found at i:997841 original size:49 final size:50
Alignment explanation
Indices: 997778--997890 Score: 156
Period size: 49 Copynumber: 2.3 Consensus size: 50
997768 TGAAAAGTCG
* * *
997778 GTGTTTTTGAAATAAAATCGAAGTTGGAGTATCCCCGATTATG-GAAAAT
1 GTGTTTTAGAAATAAAATCGAAGTTGAAGTATCCCCGATTAAGAGAAAAT
* *
997827 GTGTTTTAGAAATAAAATCGGAGTTGAAGTATCCCCGATTAAGAGAAATT
1 GTGTTTTAGAAATAAAATCGAAGTTGAAGTATCCCCGATTAAGAGAAAAT
*
997877 GATGTTTTGGAAAT
1 G-TGTTTTAGAAAT
997891 GAAACCGGGA
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
49 39 0.70
50 6 0.11
51 11 0.20
ACGTcount: A:0.35, C:0.09, G:0.23, T:0.33
Consensus pattern (50 bp):
GTGTTTTAGAAATAAAATCGAAGTTGAAGTATCCCCGATTAAGAGAAAAT
Found at i:997909 original size:51 final size:48
Alignment explanation
Indices: 997778--997911 Score: 135
Period size: 49 Copynumber: 2.7 Consensus size: 48
997768 TGAAAAGTCG
* * * *
997778 GTGTTTTTGAAATAAAATCGAAGTTGGAGTATCCCCGATTATGGAAAAT
1 GTGTTTTAGAAATAAAACCGGAGTT-GAGTATCCCCGATTAAGGAAAAT
* *
997827 GTGTTTTAGAAATAAAATCGGAGTTGAAGTATCCCCGATTAAGAGAAATT
1 GTGTTTTAGAAATAAAACCGGAGTTG-AGTATCCCCGATTAAG-GAAAAT
* *
997877 GATGTTTTGGAAATGAAACCGG-GATTAGAGTATCC
1 G-TGTTTTAGAAATAAAACCGGAG-TT-GAGTATCC
997912 TCGAGATGAA
Statistics
Matches: 73, Mismatches: 7, Indels: 8
0.83 0.08 0.09
Matches are distributed among these distances:
48 1 0.01
49 38 0.52
50 7 0.10
51 26 0.36
52 1 0.01
ACGTcount: A:0.35, C:0.10, G:0.24, T:0.31
Consensus pattern (48 bp):
GTGTTTTAGAAATAAAACCGGAGTTGAGTATCCCCGATTAAGGAAAAT
Found at i:1000351 original size:19 final size:21
Alignment explanation
Indices: 1000327--1000378 Score: 81
Period size: 21 Copynumber: 2.6 Consensus size: 21
1000317 AGCGATACAC
*
1000327 TGTATCGATACA-TTACT-TA
1 TGTATCGATACATTTACTGAA
1000346 TGTATCGATACATTTACTGAA
1 TGTATCGATACATTTACTGAA
1000367 TGTATCGATACA
1 TGTATCGATACA
1000379 AATTATTGAA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
19 12 0.40
20 5 0.17
21 13 0.43
ACGTcount: A:0.33, C:0.15, G:0.13, T:0.38
Consensus pattern (21 bp):
TGTATCGATACATTTACTGAA
Found at i:1005391 original size:62 final size:63
Alignment explanation
Indices: 1005285--1005403 Score: 168
Period size: 62 Copynumber: 1.9 Consensus size: 63
1005275 AGCACATGCC
* * *
1005285 AAGGCCCACGCGTGTGCAGCGAATCCCTCCTCAACATCCATCCCTCCCCCTCCAAACATACGT
1 AAGGCCCAAGCGTGTGCAACGAATCCCTCCCCAACATCCATCCCTCCCCCTCCAAACATACGT
* * * *
1005348 AAGG-CCAAGCGTGTGCAACTAGTCCCTCCCCAGCATCCGTCCCTCCCCCTCCAAAC
1 AAGGCCCAAGCGTGTGCAACGAATCCCTCCCCAACATCCATCCCTCCCCCTCCAAAC
1005404 GTGTTCGTCC
Statistics
Matches: 49, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
62 45 0.92
63 4 0.08
ACGTcount: A:0.23, C:0.45, G:0.15, T:0.17
Consensus pattern (63 bp):
AAGGCCCAAGCGTGTGCAACGAATCCCTCCCCAACATCCATCCCTCCCCCTCCAAACATACGT
Found at i:1008015 original size:405 final size:403
Alignment explanation
Indices: 1006883--1008771 Score: 1730
Period size: 405 Copynumber: 4.7 Consensus size: 403
1006873 CAAGTGAGGA
* * * * * * * * * * * *
1006883 CTTGGCTTGGCCAGGCCCCTTGAGCAAGGGTAGTCTCATGGCCCTTGCATCGACAATGGTGGATA
1 CTTGGCCTAGCCATGCCCCATGAGCAGGGGCAGTCTCGTGGCCCTTGCTTCGGCAACGGTGGGTT
* * * * ** *
1006948 CGTCCTGCCGGTTGCCTATCGAGGATTGTGCTCCATGCGCCTGGC-TTGGTTCGTACCCCGGCAG
66 CGTCCTGCTGGTTGCCTATCGGGGATTGTGCTCAATGCGCCTGGCATT-GATCGCGCCTCGGCAG
* ** * * * *
1007012 AGTGTCCCTCTC-GATTAAAATTCTGGTCGTGCGTGTC-TTGC-GATCATGGTTTTCAGTGA-TC
130 AGTGTCCCTCTCAG-TTAAAATCCAAGCCATGCATG-CGTT-CTGATCATGGTTTTCGGTGACT-
* * * * * * * * *
1007073 GGATGCCCAGCTGTGATGATGAAGACCCTACGTGGTCCAAGTGATCCAT-GC-TGAGCCCTCGAT
191 GGATGCCCA-CTGCGATGATGGAGACCCTTCGTAGTCCAAGTGATTCGTGGCAAG-GTCCTCGGT
***** * * * * * *
1007136 CGTTGCGTGCGCGATCTGTTGGCACACGTGTGTGGGTAACGGGGCATGGTCATGCTAGAAA-GTA
254 CACCATGTGCTCGATCGGTTGGCACGCGTGTGTGGGTAACAGGGCATGGTCATG-TCGAAAGGCA
* ** * * * * * *
1007200 AGGCTTC-CACCTTCCG-TGATAATGCCAAGTTCTCGAATTCGAGTAGATTATCTCGGTTGTGGT
318 AGGC-TCGCACC-TGCGATGATGCTGCCAAGTTCTCAAATTCAAGTAGATTGTC-CCGTTATGGC
* * * ** *
1007263 GTGGGTAGAAGCTGTAGCTGTGGG
380 ATGGGCAAAAGCTACAGGTGTGGG
* * * * * * * ** * * * *
1007287 CTTGGCGTAGCCATGCCCCAAGGGCAAGGGCAGTCCCGCGACCCTTATTTCGACAATGGGGGGCT
1 CTTGGCCTAGCCATGCCCCATGAGCAGGGGCAGTCTCGTGGCCCTTGCTTCGGCAACGGTGGGTT
* * * * * * * * * * **
1007352 CATCCTACCGGTTGGCTGTCGAGGATTGTGCACAAAGTGTCTGGCATTGATCGCGCCTTAGCAGA
66 CGTCCTGCTGGTTGCCTATCGGGGATTGTGCTCAATGCGCCTGGCATTGATCGCGCCTCGGCAGA
* ** * * * * * *
1007417 ATGTCCCTCTTGGCTAAAATCCAGGCCATGCATGCGTT-TCAATCGTGGTTTTCGATGGCTGGAT
131 GTGTCCCTCTCAGTTAAAATCCAAGCCATGCATGCGTTCT-GATCATGGTTTTCGGTGACTGGAT
* * * * *
1007481 GCCCCACTGGGGTGATGGAGACCCTTCGTAGTCCAAGTGATCCATGGCAAGGTCCCCGGTCACCA
195 G-CCCACTGCGATGATGGAGACCCTTCGTAGTCCAAGTGATTCGTGGCAAGGTCCTCGGTCACCA
* * * * * * * *
1007546 TGTGCTCGATCGGTTGGGACGCATGTGTAGGTAACAAGGTAGGGTCGTGTTGAAAGGCAAGGCTC
259 TGTGCTCGATCGGTTGGCACGCGTGTGTGGGTAACAGGGCATGGTCATGTCGAAAGGCAAGGCTC
** * * * **
1007611 GCACCTATGATGATGCTGCTAAGTTTTCAAATTCAAGTAGATTATCCCGATTGCGGCATGGGCAA
324 GCACCTGCGATGATGCTGCCAAGTTCTCAAATTCAAGTAGATTGTCCCG-TTATGGCATGGGCAA
**
1007676 AAGCTATTGGTGTGGG
388 AAGCTACAGGTGTGGG
* * * *** * * *
1007692 CTTGGCCTGGCCTTGCCTCATGTTTA-GGGCAAGTCTCATGGCCCTTGCTTTGGCAACAGTGGGT
1 CTTGGCCTAGCCATGCCCCATGAGCAGGGGC-AGTCTCGTGGCCCTTGCTTCGGCAACGGTGGGT
* * * * * *
1007756 TCGTCTTGCTAGTTGCCTATAGGGGATTGTGCTCAATGCGCTTGGCATTGATCGTGCCTCGGTAG
65 TCGTCCTGCTGGTTGCCTATCGGGGATTGTGCTCAATGCGCCTGGCATTGATCGCGCCTCGGCAG
* * * *
1007821 AGTGTCCCTCTCAGTTAAAATCCAAGCCTTGCATGCATT-TCGGTCATTGTTTTCGGTGACTGGA
130 AGTGTCCCTCTCAGTTAAAATCCAAGCCATGCATGCGTTCT-GATCATGGTTTTCGGTGACTGGA
* * *
1007885 TGACCCACTACGATGATGGAGACCCTTCGTAGTCTAAGTGATTCGTGGTAAGGTCC-CTGGTCAC
194 TG-CCCACTGCGATGATGGAGACCCTTCGTAGTCCAAGTGATTCGTGGCAAGGTCCTC-GGTCAC
* *
1007949 CATGTGCTCGATCGGTTGGCACGCGTGTGTGGGTAACGGGGCATGGTCATGTCGAAAGGTAAGGC
257 CATGTGCTCGATCGGTTGGCACGCGTGTGTGGGTAACAGGGCATGGTCATGTCGAAAGGCAAGGC
1008014 TCGCACCTGCGATGATGCTGCCAAGTTCTCAAATT-AGAGTAGATTGTCCCGGTTATGGCATGGG
322 TCGCACCTGCGATGATGCTGCCAAGTTCTCAAATTCA-AGTAGATTGTCCC-GTTATGGCATGGG
* *
1008078 CATAAGCTACCGGTGTGGG
385 CAAAAGCTACAGGTGTGGG
* *
1008097 CTTGGTCTAGCCATGCCCCATGAGCAGGGGCAGTCTCGTGGGCCTTGCTTCGGCAACGGTGGGTT
1 CTTGGCCTAGCCATGCCCCATGAGCAGGGGCAGTCTCGTGGCCCTTGCTTCGGCAACGGTGGGTT
* * *
1008162 CGTCCTGCTGGTTGCCTATCGAGGATTGTGCTCAAAGCACCTGGCATTGATCGCGCCTCGGCAGA
66 CGTCCTGCTGGTTGCCTATCGGGGATTGTGCTCAATGCGCCTGGCATTGATCGCGCCTCGGCAGA
* * * *
1008227 GTGTCCCTCTCGGTTAAAATCCAGGCCATGCATGCGTTCTGATCATGGTTTTCGGTGATTGGAAG
131 GTGTCCCTCTCAGTTAAAATCCAAGCCATGCATGCGTTCTGATCATGGTTTTCGGTGACTGGATG
* *
1008292 CTCCACTGCGGTGATGGAGACCCTTAGCG-A-TCCAAGTGA-TCTGTGGCGAGGTCCTCGGTCAC
196 C-CCACTGCGATGATGGAGACCCTT--CGTAGTCCAAGTGATTC-GTGGCAAGGTCCTCGGTCAC
* * *
1008354 CATGTGCTCGATCAGTTGGCACGCGTGTATGGGTAACAGGGCATGGTCATGCCGAAAGGCAAGGC
257 CATGTGCTCGATCGGTTGGCACGCGTGTGTGGGTAACAGGGCATGGTCATGTCGAAAGGCAAGGC
* * * **
1008419 TCACACCTGCGATGATGCTGCCAAGTTCTCGAATTCGAGTAGATTGTCATTGTTATGGCAT-GGC
322 TCGCACCTGCGATGATGCTGCCAAGTTCTCAAATTCAAGTAGATTGTC-CCGTTATGGCATGGGC
* *
1008483 TAGAAGCTACAAGTGTGGG
386 -AAAAGCTACAGGTGTGGG
* *
1008502 CTTGGCCTAGCCATGCCCCATGAGCAGGGGCAGTCTTGTGGCCCTTCCTTCGGCAACGGTGGGTT
1 CTTGGCCTAGCCATGCCCCATGAGCAGGGGCAGTCTCGTGGCCCTTGCTTCGGCAACGGTGGGTT
* ***
1008567 CGTCCTGCTGGTTGCCTATCGGGGATTTTGCTCAATGCGCCTGGCATTGATCGTC-CCTCCATAG
66 CGTCCTGCTGGTTGCCTATCGGGGATTGTGCTCAATGCGCCTGGCATTGATCG-CGCCTCGGCAG
* * ** **
1008631 AGTGTCCCTCTCAGTTAAAATCTAAGCCTTGCATGCGTTCTGATTGTTCTTTTCGGTGACTGGAT
130 AGTGTCCCTCTCAGTTAAAATCCAAGCCATGCATGCGTTCTGATCATGGTTTTCGGTGACTGGAT
* * * * * **
1008696 GTCCCATTGTGATGATGGACACCCTTCGCAGACCAAGTGATTCGTGGTGAGGTCCTCGGTCACCA
195 G-CCCACTGCGATGATGGAGACCCTTCGTAGTCCAAGTGATTCGTGGCAAGGTCCTCGGTCACCA
*
1008761 TGTGCTTGATC
259 TGTGCTCGATC
1008772 AGTCAACACG
Statistics
Matches: 1210, Mismatches: 243, Indels: 63
0.80 0.16 0.04
Matches are distributed among these distances:
403 3 0.00
404 196 0.16
405 996 0.82
406 13 0.01
407 2 0.00
ACGTcount: A:0.18, C:0.24, G:0.30, T:0.27
Consensus pattern (403 bp):
CTTGGCCTAGCCATGCCCCATGAGCAGGGGCAGTCTCGTGGCCCTTGCTTCGGCAACGGTGGGTT
CGTCCTGCTGGTTGCCTATCGGGGATTGTGCTCAATGCGCCTGGCATTGATCGCGCCTCGGCAGA
GTGTCCCTCTCAGTTAAAATCCAAGCCATGCATGCGTTCTGATCATGGTTTTCGGTGACTGGATG
CCCACTGCGATGATGGAGACCCTTCGTAGTCCAAGTGATTCGTGGCAAGGTCCTCGGTCACCATG
TGCTCGATCGGTTGGCACGCGTGTGTGGGTAACAGGGCATGGTCATGTCGAAAGGCAAGGCTCGC
ACCTGCGATGATGCTGCCAAGTTCTCAAATTCAAGTAGATTGTCCCGTTATGGCATGGGCAAAAG
CTACAGGTGTGGG
Found at i:1008130 original size:810 final size:809
Alignment explanation
Indices: 1007142--1008771 Score: 1977
Period size: 810 Copynumber: 2.0 Consensus size: 809
1007132 CGATCGTTGC
* *
1007142 GTGCGCGATCTGTTGGCACACGTGTGTGGGTAACGGGGCATGGTCATGCTAGAAAGTAAGGCTTC
1 GTGCTCGATCGGTTGGCACACGTGTGTGGGTAACGGGGCATGGTCATGCTAGAAAGTAAGGCTTC
* * * * ** *
1007207 CACCTTCCGTGATAATGCCAAGTTCTCGAATTCGAGTAGATTATCTCGGTTGTGGTGTGGGTAGA
66 CACCTTCCGTGATAATGCCAAGTTCTCAAATTAGAGTAGATTATCCCGGTTATGGCATGGGCAGA
** * *
1007272 AGCTGTAGCTGTGGGCTTGGCGTAGCCATGCCCCAAGGGCAAGGGCAGTCCCGCGACCCTTATTT
131 AGCTACAGCTGTGGGCTTGGCGTAGCCATGCCCCAAGAGCAAGGGCAGTCCCGCGACCCTTACTT
* * * ***
1007337 CGACAATGGGGGGCTCATCCTACCGGTTGGCTGTCGAGGATTGTGCACAAAGTGTCTGGCATTGA
196 CGACAACGGGGGGCTCATCCTACCGGTTGCCTATCGAGGATTGTGCACAAAGCACCTGGCATTGA
* * *
1007402 TCGCGCCTTAGCAGAATGTCCCTCTTGGCTAAAATCCAGGCCATGCATGCGTT-TCAATCGTGGT
261 TCGCGCCTCAGCAGAATGTCCCTCTCGGCTAAAATCCAGGCCATGCATGCGTTCT-AATCATGGT
* * *
1007466 TTTCGATGGCTGGATGCCCCACTGGGGTGATGGAGACCCTT-CGTAGTCCAAGTGATCCATGGCA
325 TTTCGATGACTGGAAGCCCCACTGCGGTGATGGAGACCCTTACG-A-TCCAAGTGATCCATGGCA
* * * * *
1007530 AGGTCCCCGGTCACCATGTGCTCGATCGGTTGGGACGCATGTGTAGGTAACAAGGTAGGGTCGTG
388 AGGTCCCCGGTCACCATGTGCTCGATCAGTTGGCACGCATGTATAGGTAACAAGGCAGGGTCATG
** * * * *
1007595 TTGAAAGGCAAGGCTCGCACCTATGATGATGCTGCTAAGTTTTCAAATTCAAGTAGATTATC-CC
453 CCGAAAGGCAAGGCTCACACCTACGATGATGCTGCCAAGTTCTCAAATTCAAGTAGATTATCACC
* *** * * * ***
1007659 GATTGCGGCATGGGC-AAAAGCTATTGGTGTGGGCTTGGCCTGGCCTTGCCTCATGTTTA-GGGC
518 G-TTACGGCAT-GGCTAAAAGCTACAAGTGTGGGCTTGGCCTAGCCATGCCCCATGAGCAGGGGC
* * *
1007722 AAGTCTCATGGCCCTTGCTTTGGCAACAGTGGGTTCGTCTTGCTAGTTGCCTATAGGGGATTGTG
581 -AGTCTCATGGCCCTTCCTTCGGCAACAGTGGGTTCGTCCTGCTAGTTGCCTATAGGGGATTGTG
* * **
1007787 CTCAATGCGCTTGGCATTGATCGTGCCTCGGTAGAGTGTCCCTCTCAGTTAAAATCCAAGCCTTG
645 CTCAATGCGCCTGGCATTGATCGTCCCTCCATAGAGTGTCCCTCTCAGTTAAAATCCAAGCCTTG
* * * * *
1007852 CATGCATT-TCGGTCATTGTTTTCGGTGACTGGATGACCCACTACGATGATGGAGACCCTTCGTA
710 CATGCGTTCT-GATCATTCTTTTCGGTGACTGGATGACCCACTACGATGATGGACACCCTTCGCA
* *
1007916 GTCTAAGTGATTCGTGGTAAGGTCC-CTGGTCACCAT
774 GACCAAGTGATTCGTGGTAAGGTCCTC-GGTCACCAT
* *
1007952 GTGCTCGATCGGTTGGCACGCGTGTGTGGGTAACGGGGCATGGTCATG-TCGAAAGGTAAGGC-T
1 GTGCTCGATCGGTTGGCACACGTGTGTGGGTAACGGGGCATGGTCATGCTAGAAA-GTAAGGCTT
* ** *
1008015 CGCACC-TGCGATGATGCTGCCAAGTTCTCAAATTAGAGTAGATTGTCCCGGTTATGGCATGGGC
65 C-CACCTTCCG-TGATAATGCCAAGTTCTCAAATTAGAGTAGATTATCCCGGTTATGGCATGGGC
* * * * * * * **
1008079 ATAAGCTACCGGTGTGGGCTTGGTC-TAGCCATGCCCCATGAGCAGGGGCAGTCTCGTGGGCCTT
128 AGAAGCTACAGCTGTGGGCTTGG-CGTAGCCATGCCCCAAGAGCAAGGGCAGTCCCGCGACCCTT
* * * * * * * *
1008143 GCTTCGGCAACGGTGGGTTCGTCCTGCTGGTTGCCTATCGAGGATTGTGCTCAAAGCACCTGGCA
192 ACTTCGACAACGGGGGGCTCATCCTACCGGTTGCCTATCGAGGATTGTGCACAAAGCACCTGGCA
* * * *
1008208 TTGATCGCGCCTCGGCAGAGTGTCCCTCTCGGTTAAAATCCAGGCCATGCATGCGTTCTGATCAT
257 TTGATCGCGCCTCAGCAGAATGTCCCTCTCGGCTAAAATCCAGGCCATGCATGCGTTCTAATCAT
* * * **
1008273 GGTTTTCGGTGATTGGAAGCTCCACTGCGGTGATGGAGACCCTTAGCGATCCAAGTGATCTGTGG
322 GGTTTTCGATGACTGGAAGCCCCACTGCGGTGATGGAGACCCTTA-CGATCCAAGTGATCCATGG
* * * * * *
1008338 CGAGGTCCTCGGTCACCATGTGCTCGATCAGTTGGCACGCGTGTATGGGTAACAGGGCATGGTCA
386 CAAGGTCCCCGGTCACCATGTGCTCGATCAGTTGGCACGCATGTATAGGTAACAAGGCAGGGTCA
* * * *
1008403 TGCCGAAAGGCAAGGCTCACACCTGCGATGATGCTGCCAAGTTCTCGAATTCGAGTAGATTGTCA
451 TGCCGAAAGGCAAGGCTCACACCTACGATGATGCTGCCAAGTTCTCAAATTCAAGTAGATTATCA
** * *
1008468 TTGTTATGGCATGGCTAGAAGCTACAAGTGTGGGCTTGGCCTAGCCATGCCCCATGAGCAGGGGC
516 CCGTTACGGCATGGCTAAAAGCTACAAGTGTGGGCTTGGCCTAGCCATGCCCCATGAGCAGGGGC
** * * * *
1008533 AGTCTTGTGGCCCTTCCTTCGGCAACGGTGGGTTCGTCCTGCTGGTTGCCTATCGGGGATTTTGC
581 AGTCTCATGGCCCTTCCTTCGGCAACAGTGGGTTCGTCCTGCTAGTTGCCTATAGGGGATTGTGC
*
1008598 TCAATGCGCCTGGCATTGATCGTCCCTCCATAGAGTGTCCCTCTCAGTTAAAATCTAAGCCTTGC
646 TCAATGCGCCTGGCATTGATCGTCCCTCCATAGAGTGTCCCTCTCAGTTAAAATCCAAGCCTTGC
** * * **
1008663 ATGCGTTCTGATTGTTCTTTTCGGTGACTGGATGTCCCATTGTGATGATGGACACCCTTCGCAGA
711 ATGCGTTCTGATCATTCTTTTCGGTGACTGGATGACCCACTACGATGATGGACACCCTTCGCAGA
*
1008728 CCAAGTGATTCGTGGTGAGGTCCTCGGTCACCAT
776 CCAAGTGATTCGTGGTAAGGTCCTCGGTCACCAT
*
1008762 GTGCTTGATC
1 GTGCTCGATC
1008772 AGTCAACACG
Statistics
Matches: 687, Mismatches: 121, Indels: 24
0.83 0.15 0.03
Matches are distributed among these distances:
809 13 0.02
810 662 0.96
811 10 0.01
812 2 0.00
ACGTcount: A:0.19, C:0.24, G:0.30, T:0.27
Consensus pattern (809 bp):
GTGCTCGATCGGTTGGCACACGTGTGTGGGTAACGGGGCATGGTCATGCTAGAAAGTAAGGCTTC
CACCTTCCGTGATAATGCCAAGTTCTCAAATTAGAGTAGATTATCCCGGTTATGGCATGGGCAGA
AGCTACAGCTGTGGGCTTGGCGTAGCCATGCCCCAAGAGCAAGGGCAGTCCCGCGACCCTTACTT
CGACAACGGGGGGCTCATCCTACCGGTTGCCTATCGAGGATTGTGCACAAAGCACCTGGCATTGA
TCGCGCCTCAGCAGAATGTCCCTCTCGGCTAAAATCCAGGCCATGCATGCGTTCTAATCATGGTT
TTCGATGACTGGAAGCCCCACTGCGGTGATGGAGACCCTTACGATCCAAGTGATCCATGGCAAGG
TCCCCGGTCACCATGTGCTCGATCAGTTGGCACGCATGTATAGGTAACAAGGCAGGGTCATGCCG
AAAGGCAAGGCTCACACCTACGATGATGCTGCCAAGTTCTCAAATTCAAGTAGATTATCACCGTT
ACGGCATGGCTAAAAGCTACAAGTGTGGGCTTGGCCTAGCCATGCCCCATGAGCAGGGGCAGTCT
CATGGCCCTTCCTTCGGCAACAGTGGGTTCGTCCTGCTAGTTGCCTATAGGGGATTGTGCTCAAT
GCGCCTGGCATTGATCGTCCCTCCATAGAGTGTCCCTCTCAGTTAAAATCCAAGCCTTGCATGCG
TTCTGATCATTCTTTTCGGTGACTGGATGACCCACTACGATGATGGACACCCTTCGCAGACCAAG
TGATTCGTGGTAAGGTCCTCGGTCACCAT
Found at i:1011895 original size:554 final size:554
Alignment explanation
Indices: 1010835--1011942 Score: 1993
Period size: 554 Copynumber: 2.0 Consensus size: 554
1010825 GTGGGCGATT
1010835 CGCCACCCGCGACATCGCGAGAAGTCCACTAAACCTTATCATCTAGAGGAAGTGTCGCGATATGC
1 CGCCACCCGCGACATCGCGAGAAGTCCACTAAACCTTATCATCTAGAGGAAGTGTCGCGATATGC
*
1010900 ACTCGACCCTCAGTGATAAGGTAAATGAGGCGCACACGACTTAATACCCCTCGTGATTAGGGATT
66 ACTCGACCCTCAGTGATAAGATAAATGAGGCGCACACGACTTAATACCCCTCGTGATTAGGGATT
*
1010965 TCTATGGCATGATAGAAGGTATATTGATTGATGGGGAAGATTGGTAGGTGGTGCAACGCTCGAAA
131 TCTATGGCATGATAAAAGGTATATTGATTGATGGGGAAGATTGGTAGGTGGTGCAACGCTCGAAA
1011030 TCGGTACCTTACTAGCTTCATTTTGACTTGACTTGGTTTCATTGGTTTCGACTTGATATTATTTC
196 TCGGTACCTTACTAGCTTCATTTTGACTTGACTTGGTTTCATTGGTTTCGACTTGATATTATTTC
*
1011095 AATATGATCCCCTTGAATGCATGAATTTTGTATAAAAATAAATTTAGGTTTGATAAAAGGTTTTA
261 AATATGATCCCCTTGAATGCATGAATTTTGTATAAAAATAAATCTAGGTTTGATAAAAGGTTTTA
* *
1011160 ATCCCGTATACGCCCCAGAGAGATGGGGAACGTAAAGACATAAAATAACCTTAGGATTCATTTTT
326 ATCCCATATACGCCCCAGAGAGATGGGGAACATAAAGACATAAAATAACCTTAGGATTCATTTTT
*
1011225 GAAAACTAGATATTCCATATTAGGCATTGGAGAGATATCGACACGGAGCGTTGCCTTTATAATTT
391 GAAAACTAGATATTCCATATTAGGCACTGGAGAGATATCGACACGGAGCGTTGCCTTTATAATTT
* *
1011290 TTGTAACAAAATTTTTGAAAACATGAATGCACATAATATTTGGCAAAATGTTAGTAGAACAATAG
456 TTGTAACAAAATTTTTGAAAACATGAATGCACATAATATTCGACAAAATGTTAGTAGAACAATAG
1011355 GTGAAATAATGTTATATAAAATAATTCACAAAAA
521 GTGAAATAATGTTATATAAAATAATTCACAAAAA
* * *
1011389 CGCCACCCGTGACGTCGCGAGAAG-CCTACTGAACCTTATCATCTAGAGGAAGTGTCGCGATATG
1 CGCCACCCGCGACATCGCGAGAAGTCC-ACTAAACCTTATCATCTAGAGGAAGTGTCGCGATATG
* ** * *
1011453 CACTCGACCCTCGGTGATAAGATAAATGAGGCGTGCCCGACTTAATACCCCTCGTGATTGGGGAT
65 CACTCGACCCTCAGTGATAAGATAAATGAGGCGCACACGACTTAATACCCCTCGTGATTAGGGAT
*
1011518 TTGTATGGCATGATAAAAGGTATATTGATTGATGGGGAAGATTGGTAGGTGGTGCAACGCTCGAA
130 TTCTATGGCATGATAAAAGGTATATTGATTGATGGGGAAGATTGGTAGGTGGTGCAACGCTCGAA
1011583 ATCGGTACCTTACTAGCTTCATTTTGACTTGACTTGGTTTCATTGGTTTCGACTTGATATTATTT
195 ATCGGTACCTTACTAGCTTCATTTTGACTTGACTTGGTTTCATTGGTTTCGACTTGATATTATTT
1011648 CAATATGATCCCCTTGAATGCATGAATTTTGTATAAAAATAAATCTAGGTTTGATAAAAGGTTTT
260 CAATATGATCCCCTTGAATGCATGAATTTTGTATAAAAATAAATCTAGGTTTGATAAAAGGTTTT
** *
1011713 AATCCCATATTTGCCCCAGAGGGATGGGGAACATAAAGACATAAAATAACCTTAGGATTCATTTT
325 AATCCCATATACGCCCCAGAGAGATGGGGAACATAAAGACATAAAATAACCTTAGGATTCATTTT
*
1011778 TGAAAACTAGATATTCCATATTAGGCACTGGAGAGATATCGACATGGAGCGTTGCCTTTATAATT
390 TGAAAACTAGATATTCCATATTAGGCACTGGAGAGATATCGACACGGAGCGTTGCCTTTATAATT
* *
1011843 TTTGTAACAAAATTTTTGAAAACATGAATGCACATAATATTCGACGAAATGTTAGTAGAATAATA
455 TTTGTAACAAAATTTTTGAAAACATGAATGCACATAATATTCGACAAAATGTTAGTAGAACAATA
1011908 GGTGAAATAATGTTATATAAAATAATTCACAAAAA
520 GGTGAAATAATGTTATATAAAATAATTCACAAAAA
1011943 GTAACAATAA
Statistics
Matches: 530, Mismatches: 23, Indels: 2
0.95 0.04 0.00
Matches are distributed among these distances:
553 2 0.00
554 528 1.00
ACGTcount: A:0.33, C:0.16, G:0.21, T:0.30
Consensus pattern (554 bp):
CGCCACCCGCGACATCGCGAGAAGTCCACTAAACCTTATCATCTAGAGGAAGTGTCGCGATATGC
ACTCGACCCTCAGTGATAAGATAAATGAGGCGCACACGACTTAATACCCCTCGTGATTAGGGATT
TCTATGGCATGATAAAAGGTATATTGATTGATGGGGAAGATTGGTAGGTGGTGCAACGCTCGAAA
TCGGTACCTTACTAGCTTCATTTTGACTTGACTTGGTTTCATTGGTTTCGACTTGATATTATTTC
AATATGATCCCCTTGAATGCATGAATTTTGTATAAAAATAAATCTAGGTTTGATAAAAGGTTTTA
ATCCCATATACGCCCCAGAGAGATGGGGAACATAAAGACATAAAATAACCTTAGGATTCATTTTT
GAAAACTAGATATTCCATATTAGGCACTGGAGAGATATCGACACGGAGCGTTGCCTTTATAATTT
TTGTAACAAAATTTTTGAAAACATGAATGCACATAATATTCGACAAAATGTTAGTAGAACAATAG
GTGAAATAATGTTATATAAAATAATTCACAAAAA
Found at i:1014447 original size:20 final size:19
Alignment explanation
Indices: 1014422--1014492 Score: 88
Period size: 20 Copynumber: 3.6 Consensus size: 19
1014412 TTTTAACTAG
1014422 ATGTATCGATACATTGAAGA
1 ATGTATCGATACATTGAA-A
* *
1014442 ATGTATCGATACATTCATAC
1 ATGTATCGATACATTGA-AA
*
1014462 ATGTATCGATACATAGAAAA
1 ATGTATCGATACATTG-AAA
1014482 ATGTATCGATA
1 ATGTATCGATA
1014493 TATCTGGCTA
Statistics
Matches: 44, Mismatches: 5, Indels: 4
0.83 0.09 0.08
Matches are distributed among these distances:
20 42 0.95
21 2 0.05
ACGTcount: A:0.41, C:0.13, G:0.15, T:0.31
Consensus pattern (19 bp):
ATGTATCGATACATTGAAA
Found at i:1015143 original size:10 final size:10
Alignment explanation
Indices: 1015128--1015166 Score: 53
Period size: 10 Copynumber: 4.0 Consensus size: 10
1015118 TCATTCTCAC
*
1015128 CTTTTTTTTT
1 CTTTTTTGTT
1015138 CTTTTTTGTT
1 CTTTTTTGTT
*
1015148 CTTTTTTGAT
1 CTTTTTTGTT
1015158 -TTTTTTGTT
1 CTTTTTTGTT
1015167 AGTTTTTGAC
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
9 8 0.31
10 18 0.69
ACGTcount: A:0.03, C:0.08, G:0.08, T:0.82
Consensus pattern (10 bp):
CTTTTTTGTT
Found at i:1015172 original size:19 final size:19
Alignment explanation
Indices: 1015139--1015175 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
1015129 TTTTTTTTTC
**
1015139 TTTTTTGTTCTTTTTTGAT
1 TTTTTTGTTAGTTTTTGAT
1015158 TTTTTTGTTAGTTTTTGA
1 TTTTTTGTTAGTTTTTGA
1015176 CTAAAGGTTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.08, C:0.03, G:0.14, T:0.76
Consensus pattern (19 bp):
TTTTTTGTTAGTTTTTGAT
Found at i:1016695 original size:28 final size:28
Alignment explanation
Indices: 1016537--1017080 Score: 445
Period size: 28 Copynumber: 18.9 Consensus size: 28
1016527 TTTTAAAAAA
*
1016537 GGTGCCACTAACTTATGTGGGCTTTGAAAAG
1 GGTGCCACTGAC-T-TGTGGGCTTTG-AAAG
*
1016568 AGTTGCCA-TCGACTTGTGTGGGCTTTGAAAG
1 -GGTGCCACT-GAC-T-TGTGGGCTTTGAAAG
* *
1016599 GGTGCCACCGATTTGTGGGC-TTGAAA-
1 GGTGCCACTGACTTGTGGGCTTTGAAAG
** *
1016625 GG-G-CACCAACTTATGGGCTTTGAAAG
1 GGTGCCACTGACTTGTGGGCTTTGAAAG
*
1016651 GGTATGCCACTGACTTGTGGGCTCTGAAAG
1 GG--TGCCACTGACTTGTGGGCTTTGAAAG
*
1016681 GGTGCCACTGACTTGTGGGCTTTGGAAG
1 GGTGCCACTGACTTGTGGGCTTTGAAAG
* *
1016709 GGTGCCA-TCGATTTATGTAGGCTTTGAAAAG
1 GGTGCCACT-GA-CT-TGTGGGCTTTG-AAAG
* * *
1016740 AGTTGCCACCGACCTATGTGGACTTTGAAAAG
1 -GGTGCCACTGA-CT-TGTGGGCTTTG-AAAG
* *
1016772 AGTTACCACTGACTTGTGGGCTTTGAAAAG
1 -GGTGCCACTGACTTGTGGGCTTTG-AAAG
* *
1016802 GGTGCCTCTGACTTGGGGGCTTTGAAAG
1 GGTGCCACTGACTTGTGGGCTTTGAAAG
* * *
1016830 CGTGCCACTAACTTGTGGGCTTTAAAAG
1 GGTGCCACTGACTTGTGGGCTTTGAAAG
* ** *
1016858 GATGCCACTGACTTGAAGGCTTTGGAAG
1 GGTGCCACTGACTTGTGGGCTTTGAAAG
* * *
1016886 GATGCCACTGACTTATGGGCTTTGGAAG
1 GGTGCCACTGACTTGTGGGCTTTGAAAG
* * * *
1016914 GATGCCACTAACTTATGGGCTTTGAAAA
1 GGTGCCACTGACTTGTGGGCTTTGAAAG
* *
1016942 GATGCCACTAACTTGTGGGCTTTGAGAAG
1 GGTGCCACTGACTTGTGGGCTTTGA-AAG
* *
1016971 GATGCCACTAACTTGTGGGCTTTGAAAG
1 GGTGCCACTGACTTGTGGGCTTTGAAAG
* * * **
1016999 GATGCCATTGACTTATACGCTTTG-AAG
1 GGTGCCACTGACTTGTGGGCTTTGAAAG
* *
1017026 GGATGCCACTGACTTGTGGGCTTTAAAAT
1 GG-TGCCACTGACTTGTGGGCTTTGAAAG
* *
1017055 GATGCCACTGACCTGTGGGCTTTGAA
1 GGTGCCACTGACTTGTGGGCTTTGAA
1017081 GAGATAGCGT
Statistics
Matches: 429, Mismatches: 66, Indels: 38
0.80 0.12 0.07
Matches are distributed among these distances:
24 12 0.03
25 7 0.02
26 4 0.01
27 11 0.03
28 223 0.52
29 53 0.12
30 54 0.13
31 10 0.02
32 55 0.13
ACGTcount: A:0.23, C:0.18, G:0.30, T:0.28
Consensus pattern (28 bp):
GGTGCCACTGACTTGTGGGCTTTGAAAG
Found at i:1016985 original size:113 final size:113
Alignment explanation
Indices: 1016640--1017080 Score: 406
Period size: 113 Copynumber: 3.8 Consensus size: 113
1016630 CCAACTTATG
* * * *
1016640 GGCTTTGAAAGGGTATGCCACTGACTTGTGGGCTCTGAAAGGGTGCCACTGACTTGTGGGCTTTG
1 GGCTTTGAAA-GG-ATGCCACTGACTTATGGGCTTTGGAAGGATGCCACTGACTTGTGGGCTTTG
* * * * ** * * * * *
1016705 GAAGGGTGCCATCGATTTATGTAGGCTTTGAAAAGAGTTGCCACCGACCTATG-T
64 AAAAGATGCCA-CTAACT-TGTGGGCTTTGAAAAG-GATGCCA-CTAACT-TGAA
* * * * * * *
1016759 GGACTTTGAAAAGAGTTACCACTGACTTGTGGGCTTTGAAAAGGGTGCCTCTGACTTGGGGGCTT
1 GG-CTTTG-AAAG-GATGCCACTGACTTATGGGCTTTG-GAAGGATGCCACTGACTTGTGGGCTT
* *
1016824 TG-AAAGCGTGCCACTAACTTGTGGGCTTT-AAAAGGATGCCACTGACTTGAA
62 TGAAAAG-ATGCCACTAACTTGTGGGCTTTGAAAAGGATGCCACTAACTTGAA
* * *
1016875 GGCTTTGGAAGGATGCCACTGACTTATGGGCTTTGGAAGGATGCCACTAACTTATGGGCTTTGAA
1 GGCTTTGAAAGGATGCCACTGACTTATGGGCTTTGGAAGGATGCCACTGACTTGTGGGCTTTGAA
* **
1016940 AAGATGCCACTAACTTGTGGGCTTTGAGAAGGATGCCACTAACTTGTG
66 AAGATGCCACTAACTTGTGGGCTTTGAAAAGGATGCCACTAACTTGAA
* **
1016988 GGCTTTGAAAGGATGCCATTGACTTATACGCTTT-GAAGGGATGCCACTGACTTGTGGGCTTT-A
1 GGCTTTGAAAGGATGCCACTGACTTATGGGCTTTGGAA-GGATGCCACTGACTTGTGGGCTTTGA
* *
1017051 AAATGATGCCACTGACCTGTGGGCTTTGAA
65 AAA-GATGCCACTAACTTGTGGGCTTTGAA
1017081 GAGATAGCGT
Statistics
Matches: 273, Mismatches: 39, Indels: 26
0.81 0.12 0.08
Matches are distributed among these distances:
112 50 0.18
113 118 0.43
114 3 0.01
115 7 0.03
116 5 0.02
117 6 0.02
118 5 0.02
119 11 0.04
120 32 0.12
121 36 0.13
ACGTcount: A:0.24, C:0.18, G:0.30, T:0.29
Consensus pattern (113 bp):
GGCTTTGAAAGGATGCCACTGACTTATGGGCTTTGGAAGGATGCCACTGACTTGTGGGCTTTGAA
AAGATGCCACTAACTTGTGGGCTTTGAAAAGGATGCCACTAACTTGAA
Found at i:1026945 original size:51 final size:49
Alignment explanation
Indices: 1026881--1027048 Score: 156
Period size: 51 Copynumber: 3.3 Consensus size: 49
1026871 AAAATAACGG
**
1026881 GGTTGGAGTATCCCCGATTGTGGAAAATCGATGCTTTAGAAATAAGGCCAA
1 GGTTGGAGTATCCCCGATTGTGGAAAATCG-TGCTTTAGAAATAAAACC-A
* * * * * *
1026932 GGTTGGAGTATCCCCGATTGTGAGAAATTTGTGTTTTGGAAATAAAATCG
1 GGTTGGAGTATCCCCGATTGTG-GAAAATCGTGCTTTAGAAATAAAACCA
* ** **
1026982 GAGTTGGAGTATCCCCGATTGTGGAAAAATGGTATTTTAGAAATAAAATTA
1 G-GTTGGAGTATCCCCGATTGTGG-AAAATCGTGCTTTAGAAATAAAACCA
*
1027033 GGGTTAGAGTATCCCC
1 -GGTTGGAGTATCCCC
1027049 TTGGAAATAA
Statistics
Matches: 98, Mismatches: 15, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
50 2 0.02
51 89 0.91
52 7 0.07
ACGTcount: A:0.31, C:0.12, G:0.27, T:0.30
Consensus pattern (49 bp):
GGTTGGAGTATCCCCGATTGTGGAAAATCGTGCTTTAGAAATAAAACCA
Found at i:1027070 original size:28 final size:27
Alignment explanation
Indices: 1027039--1027104 Score: 78
Period size: 28 Copynumber: 2.4 Consensus size: 27
1027029 ATTAGGGTTA
*
1027039 GAGTATCCCCTTGGAAATAACGGGATTG
1 GAGTATCCCCAT-GAAATAACGGGATTG
* *
1027067 GAGTATCCTCGATGAAATAACGGGGTTG
1 GAGTATCC-CCATGAAATAACGGGATTG
*
1027095 GAGTACCCCC
1 GAGTATCCCC
1027105 GATTATGAAA
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
27 1 0.03
28 29 0.91
29 2 0.06
ACGTcount: A:0.27, C:0.21, G:0.29, T:0.23
Consensus pattern (27 bp):
GAGTATCCCCATGAAATAACGGGATTG
Found at i:1027107 original size:28 final size:28
Alignment explanation
Indices: 1027052--1027107 Score: 85
Period size: 28 Copynumber: 2.0 Consensus size: 28
1027042 TATCCCCTTG
* *
1027052 GAAATAACGGGATTGGAGTATCCTCGAT
1 GAAATAACGGGATTGGAGTACCCCCGAT
*
1027080 GAAATAACGGGGTTGGAGTACCCCCGAT
1 GAAATAACGGGATTGGAGTACCCCCGAT
1027108 TATGAAAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.30, C:0.18, G:0.30, T:0.21
Consensus pattern (28 bp):
GAAATAACGGGATTGGAGTACCCCCGAT
Found at i:1033499 original size:13 final size:13
Alignment explanation
Indices: 1033481--1033506 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1033471 AAGGTAGCTT
1033481 TTGTATCGATACA
1 TTGTATCGATACA
1033494 TTGTATCGATACA
1 TTGTATCGATACA
1033507 ACACTTATGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:1036639 original size:33 final size:34
Alignment explanation
Indices: 1036563--1036676 Score: 144
Period size: 34 Copynumber: 3.4 Consensus size: 34
1036553 CTTACAACCC
* * * * *
1036563 TATCTTTTCATAGGTTAAGATAAAACCT-TCTCCT
1 TATCTTTTCACAAGCTAAGATAGAACCTCT-TCCA
1036597 TATCTTTTCACAAGCTAAGATAGAA-CTCTTCCA
1 TATCTTTTCACAAGCTAAGATAGAACCTCTTCCA
*
1036630 TATCTTTTCACAAGCTAAGATAGAACCTCTTCCC
1 TATCTTTTCACAAGCTAAGATAGAACCTCTTCCA
1036664 TATCTTTT-ACAAG
1 TATCTTTTCACAAG
1036677 GAAAAAAATT
Statistics
Matches: 72, Mismatches: 6, Indels: 5
0.87 0.07 0.06
Matches are distributed among these distances:
33 35 0.49
34 37 0.51
ACGTcount: A:0.31, C:0.24, G:0.09, T:0.37
Consensus pattern (34 bp):
TATCTTTTCACAAGCTAAGATAGAACCTCTTCCA
Found at i:1041590 original size:160 final size:162
Alignment explanation
Indices: 1041312--1041929 Score: 614
Period size: 161 Copynumber: 3.8 Consensus size: 162
1041302 CGAAAGTATT
* * *
1041312 AATTTAATTTAATTTTATTTATTTTTGAAAATACCATTTCGTACCCTAATGGAAGCCGGAAAGGA
1 AATTTAATTTAATTTTATTTATTTTCGAAAATACCATTTCGTACCCTAATGGAAGCCCGAAAGAA
* * * * * *
1041377 TAAGAAATGTTTTTGAAATTTTTTATACCCCTACGGATGCCCATAGGAATATAAAAGATTAGAAT
66 TACGAAAGGTTTTTGAAATCTTTTATACCCCTAAGGATGCCCATAGAAATATAAAAGATTAGAAA
*
1041442 TAAT-AATACTAGAAA-TTATCCCAAGAATACC
131 AAATAAATACTA-AAATTTATCCCAAGAATACC
* * * * * *
1041473 AATTCAATTTAATTTTATTTGTTTTCAAAAATACTATTTCATACCCTAAT-GAAACCCGAAAGAA
1 AATTTAATTTAATTTTATTTATTTTCGAAAATACCATTTCGTACCCTAATGGAAGCCCGAAAGAA
*
1041537 TACGAAAGGTTTTTGAAATCTTTTATACCCCTAAGGATGCCTATAGAAATATAAAAGATTAGAAA
66 TACGAAAGGTTTTTGAAATCTTTTATACCCCTAAGGATGCCCATAGAAATATAAAAGATTAGAAA
* *
1041602 AAATAAATATTAAAATTTATCCCAAGAATACT
131 AAATAAATACTAAAATTTATCCCAAGAATACC
* **
1041634 AATTTAATTTTATTTTATTTATTTTCGAAAATACCATTTCGTACCCTAATGGAAGCCTAAAAGAA
1 AATTTAATTTAATTTTATTTATTTTCGAAAATACCATTTCGTACCCTAATGGAAGCCCGAAAGAA
* * ** * * *
1041699 TACAAAAGGTTTTTGAAATC-TTTATACCCTTATA-GAT-ATCAGAGGAACATAAAAGATTAGAA
66 TACGAAAGGTTTTTGAAATCTTTTATACCCCTA-AGGATGCCCATAGAAATATAAAAGATTAGAA
* * * *
1041761 AAAA-ATAAT--TAAAATTTATTCTAA-AAGTGCT
130 AAAATA-AATACTAAAATTTATCCCAAGAA-TACC
* * * * * * *
1041792 AATTTAATTTAATTTAATTTTTATTTATTTCAAAAATACCTTTTCATATCCTAATAGAAGCCCAA
1 AATTTAATTTAATTT--TATTTA--T-TTTCGAAAATACCATTTCGTACCCTAATGGAAGCCCGA
* * ** * * *
1041857 AATG-ATACAAAATGCCTTTGAAATCTTTTATACTCCTATGGATACCCATAGGAACA-AT-AAAG
61 AA-GAATACGAAAGGTTTTTGAAATCTTTTATACCCCTAAGGATGCCCATA-GAA-ATATAAAAG
1041919 ATTAGAAAAAA
123 ATTAGAAAAAA
1041930 ATAATTAAAA
Statistics
Matches: 383, Mismatches: 57, Indels: 30
0.81 0.12 0.06
Matches are distributed among these distances:
157 2 0.01
158 30 0.08
159 1 0.00
160 106 0.28
161 123 0.32
162 32 0.08
163 52 0.14
164 14 0.04
165 18 0.05
166 4 0.01
167 1 0.00
ACGTcount: A:0.42, C:0.13, G:0.10, T:0.35
Consensus pattern (162 bp):
AATTTAATTTAATTTTATTTATTTTCGAAAATACCATTTCGTACCCTAATGGAAGCCCGAAAGAA
TACGAAAGGTTTTTGAAATCTTTTATACCCCTAAGGATGCCCATAGAAATATAAAAGATTAGAAA
AAATAAATACTAAAATTTATCCCAAGAATACC
Found at i:1042896 original size:16 final size:15
Alignment explanation
Indices: 1042873--1042910 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
1042863 TTATTCTATT
*
1042873 TTTCTTTTTTTTCTC
1 TTTCTTTTTTATCTC
1042888 TTTCTTTTTTATCTC
1 TTTCTTTTTTATCTC
1042903 TCTTCTTT
1 T-TTCTTT
1042911 CAGCTAAACT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
15 15 0.71
16 6 0.29
ACGTcount: A:0.03, C:0.21, G:0.00, T:0.76
Consensus pattern (15 bp):
TTTCTTTTTTATCTC
Found at i:1043513 original size:167 final size:162
Alignment explanation
Indices: 1043317--1043771 Score: 389
Period size: 162 Copynumber: 2.8 Consensus size: 162
1043307 TAAAAAATTT
* * * * ****
1043317 AAACAAAGAAAAATCTCCCTAAGAAAATTTATGGAGAAAAAAACACCGTATTTTGGAATATGGGA
1 AAACCAAGAAAAATCTCCCTAAAAAAATTTATAGAGAAAAAAACACCGTA-TTTCGAA-AAAAAA
* *
1043382 ATTTCAAGGAAAAAAATTCAAAAATTTAAGAAAATGAAGGAATTTCTGAAAAC-AGATTTAATGT
64 ATTTCAA--AAAAAAATTC-AAAATTTAAGAAAATGAAGGAATTTCTGAAAACTA-AATTAATAT
* * *
1043446 GAAATAAATAATAATATTTTATTAATTTTAAAAACCAA
125 AAAATAAATAATAATATTTGATGAATTTTAAAAACCAA
* * * **
1043484 AAACCGAGAAAAATCTCCCTAAAAAAATTTATAGAGTAGAAAACTTCGTATTTCGAAAAAAAAAT
1 AAACCAAGAAAAATCTCCCTAAAAAAATTTATAGAGAAAAAAACACCGTATTTCGAAAAAAAAAT
* * * * * * * *
1043549 TTCAAAGAAAAATTCAAAATTTATGGAAGTGAATGAGTTTTTGAAATCTAAATTAATATAAAATA
66 TTCAAAAAAAAATTCAAAATTTAAGAAAATGAAGGAATTTCTGAAAACTAAATTAATATAAAATA
**
1043614 AATAATAATATTTGATGAATTTTAAAAATTAA
131 AATAATAATATTTGATGAATTTTAAAAACCAA
* * * * * * * * * *
1043646 AAACCAAAAAAAATCCTCCC-GAAAAAATTTACAAAG-TAGAAACTCTGTCTTTTAGAAAAAAGG
1 AAACCAAGAAAAAT-CTCCCTAAAAAAATTTATAGAGAAAAAAACACCGT-ATTTCGAAAAAA--
* * * *
1043709 GAAATTTC-AAAGAAAATTTAAAATTTATGAAAATGAATGAAATTT-TGAAAACTAAATTAATAT
62 -AAATTTCAAAAAAAAATTCAAAATTTAAGAAAATGAA-GGAATTTCTGAAAACTAAATTAATAT
1043772 GTTTTCAAGT
Statistics
Matches: 232, Mismatches: 49, Indels: 17
0.78 0.16 0.06
Matches are distributed among these distances:
161 7 0.03
162 101 0.44
163 15 0.06
164 41 0.18
165 20 0.09
166 6 0.03
167 42 0.18
ACGTcount: A:0.52, C:0.09, G:0.11, T:0.29
Consensus pattern (162 bp):
AAACCAAGAAAAATCTCCCTAAAAAAATTTATAGAGAAAAAAACACCGTATTTCGAAAAAAAAAT
TTCAAAAAAAAATTCAAAATTTAAGAAAATGAAGGAATTTCTGAAAACTAAATTAATATAAAATA
AATAATAATATTTGATGAATTTTAAAAACCAA
Found at i:1043650 original size:162 final size:162
Alignment explanation
Indices: 1043394--1043771 Score: 435
Period size: 162 Copynumber: 2.3 Consensus size: 162
1043384 TTCAAGGAAA
* * * * *
1043394 AAAATTCAAAAATTTAAGAAAATGAA-GGAATTTCTGAAAAC-AGATTTAATGTGAAATAAATAA
1 AAAATTC-AAAATTTATGAAAATGAATGAAATTT-TGAAAACTA-AATTAATATAAAATAAATAA
* * * * * *
1043457 TAATATTTTATTAATTTTAAAAACCAAAAACCGAGAAAAAT-CTCCCTAAAAAAATTTATAGAGT
63 TAATATTTGATGAATTTTAAAAACCAAAAACCAAAAAAAATCCTCCC-AAAAAAATTTACAAAGT
*
1043521 AGAAAACT-TCGT-ATTTCGAAAAAA-AAATTTCAAAG
127 AG-AAACTCT-GTCATTTAGAAAAAAGAAATTTCAAAG
* * ** *
1043556 AAAAATTCAAAATTTATGGAAGTGAATGAGTTTTTGAAATCTAAATTAATATAAAATAAATAATA
1 -AAAATTCAAAATTTATGAAAATGAATGAAATTTTGAAAACTAAATTAATATAAAATAAATAATA
** *
1043621 ATATTTGATGAATTTTAAAAATTAAAAACCAAAAAAAATCCTCCCGAAAAAATTTACAAAGTAGA
65 ATATTTGATGAATTTTAAAAACCAAAAACCAAAAAAAATCCTCCCAAAAAAATTTACAAAGTAGA
*
1043686 AACTCTGTCTTTTAGAAAAAAGGGAAATTTCAAAG
130 AACTCTGTCATTTAGAAAAAA--GAAATTTCAAAG
*
1043721 AAAATTTAAAATTTATGAAAATGAATGAAATTTTGAAAACTAAATTAATAT
1 AAAATTCAAAATTTATGAAAATGAATGAAATTTTGAAAACTAAATTAATAT
1043772 GTTTTCAAGT
Statistics
Matches: 180, Mismatches: 27, Indels: 15
0.81 0.12 0.07
Matches are distributed among these distances:
161 7 0.04
162 100 0.56
163 17 0.09
164 45 0.25
165 11 0.06
ACGTcount: A:0.52, C:0.08, G:0.10, T:0.30
Consensus pattern (162 bp):
AAAATTCAAAATTTATGAAAATGAATGAAATTTTGAAAACTAAATTAATATAAAATAAATAATAA
TATTTGATGAATTTTAAAAACCAAAAACCAAAAAAAATCCTCCCAAAAAAATTTACAAAGTAGAA
ACTCTGTCATTTAGAAAAAAGAAATTTCAAAG
Found at i:1053929 original size:52 final size:52
Alignment explanation
Indices: 1053844--1053995 Score: 218
Period size: 52 Copynumber: 2.9 Consensus size: 52
1053834 CGAAATATGA
* *
1053844 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATTTGGGC
1 AAATTTGCCTGCATGTATCGATAAATTTCATAGTGTATCGATACATTTCGGC
* *
1053896 AAATTTGCCTGAATGTATCGATAAATTTTATAGTGTATCGATACATTTCGGC
1 AAATTTGCCTGCATGTATCGATAAATTTCATAGTGTATCGATACATTTCGGC
**
1053948 AAATTTGCCTGCATGTATCGATACAA--AGATCAGTGTATCGATACATTT
1 AAATTTGCCTGCATGTATCGATA-AATTTCAT-AGTGTATCGATACATTT
1053996 TTTGGCAGTA
Statistics
Matches: 91, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
51 2 0.02
52 87 0.96
53 2 0.02
ACGTcount: A:0.30, C:0.16, G:0.18, T:0.36
Consensus pattern (52 bp):
AAATTTGCCTGCATGTATCGATAAATTTCATAGTGTATCGATACATTTCGGC
Found at i:1054038 original size:19 final size:17
Alignment explanation
Indices: 1054014--1054111 Score: 77
Period size: 19 Copynumber: 5.8 Consensus size: 17
1054004 TAGCTTATAT
1054014 TGTATCGATACAAAACTTA
1 TGTATCGATAC-AAAC-TA
1054033 TGTATCGATAC--A-T-
1 TGTATCGATACAAACTA
1054046 TGTATCGATACAACACCTA
1 TGTATCGATACAA-A-CTA
1054065 TGTATCGATAC--A-T-
1 TGTATCGATACAAACTA
1054078 TGTATCGATACAACACTTTA
1 TGTATCGATACAA-AC--TA
1054098 TGTATCGATACAAA
1 TGTATCGATACAAA
1054112 TCGTTGAAAT
Statistics
Matches: 66, Mismatches: 0, Indels: 26
0.72 0.00 0.28
Matches are distributed among these distances:
13 22 0.33
14 2 0.03
16 4 0.06
18 1 0.02
19 24 0.36
20 13 0.20
ACGTcount: A:0.37, C:0.18, G:0.12, T:0.33
Consensus pattern (17 bp):
TGTATCGATACAAACTA
Found at i:1054051 original size:13 final size:13
Alignment explanation
Indices: 1054033--1054089 Score: 60
Period size: 13 Copynumber: 3.9 Consensus size: 13
1054023 ACAAAACTTA
1054033 TGTATCGATACAT
1 TGTATCGATACAT
1054046 TGTATCGATACAACACCT
1 TGTATCGAT---ACA--T
1054064 ATGTATCGATACAT
1 -TGTATCGATACAT
1054078 TGTATCGATACA
1 TGTATCGATACA
1054090 ACACTTTATG
Statistics
Matches: 38, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
13 21 0.55
14 1 0.03
16 6 0.16
18 1 0.03
19 9 0.24
ACGTcount: A:0.33, C:0.19, G:0.14, T:0.33
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1054053 original size:32 final size:32
Alignment explanation
Indices: 1054012--1054109 Score: 169
Period size: 32 Copynumber: 3.0 Consensus size: 32
1054002 AGTAGCTTAT
*
1054012 ATTGTATCGATACAAAACTTATGTATCGATAC
1 ATTGTATCGATACAACACTTATGTATCGATAC
*
1054044 ATTGTATCGATACAACACCTATGTATCGATAC
1 ATTGTATCGATACAACACTTATGTATCGATAC
1054076 ATTGTATCGATACAACACTTTATGTATCGATAC
1 ATTGTATCGATACAACAC-TTATGTATCGATAC
1054109 A
1 A
1054110 AATCGTTGAA
Statistics
Matches: 62, Mismatches: 3, Indels: 1
0.94 0.05 0.02
Matches are distributed among these distances:
32 48 0.77
33 14 0.23
ACGTcount: A:0.36, C:0.18, G:0.12, T:0.34
Consensus pattern (32 bp):
ATTGTATCGATACAACACTTATGTATCGATAC
Found at i:1054988 original size:21 final size:21
Alignment explanation
Indices: 1054964--1055031 Score: 52
Period size: 21 Copynumber: 3.2 Consensus size: 21
1054954 GTTAAAGATG
1054964 AAGGTGCCAATGTGCTGATTC
1 AAGGTGCCAATGTGCTGATTC
* * *
1054985 AAGGCCAGCGATAT-TG--GACTTA
1 AAGG--TGCCA-ATGTGCTGA-TTC
1055007 AAGGTGCCAATGTGCTGATTC
1 AAGGTGCCAATGTGCTGATTC
1055028 AAGG
1 AAGG
1055032 CCAACTACAT
Statistics
Matches: 34, Mismatches: 6, Indels: 14
0.63 0.11 0.26
Matches are distributed among these distances:
19 2 0.06
20 5 0.15
21 12 0.35
22 8 0.24
23 5 0.15
24 2 0.06
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.25
Consensus pattern (21 bp):
AAGGTGCCAATGTGCTGATTC
Found at i:1055025 original size:43 final size:44
Alignment explanation
Indices: 1054963--1055287 Score: 341
Period size: 43 Copynumber: 7.1 Consensus size: 44
1054953 TGTTAAAGAT
1054963 GAAGGTGCCAATGTGCTGATTCAAGGCCAGCGATATTGGACTTA
1 GAAGGTGCCAATGTGCTGATTCAAGGCCAGCGATATTGGACTTA
* * *
1055007 -AAGGTGCCAATGTGCTGATTCAAGGCCAACTACATTGGACTTAAAGA
1 GAAGGTGCCAATGTGCTGATTCAAGGCCAGCGATATTGGACTT----A
* * *
1055054 TGAAGGTACCAATATGCTGATTCAAGGCCAGTGATATTGGACTTA
1 -GAAGGTGCCAATGTGCTGATTCAAGGCCAGCGATATTGGACTTA
* *
1055099 -AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGA
1 GAAGGTGCCAATGTGCTGATTCAAGGCCAGCGATATTGGACTT----A
* * *
1055146 TGAAGGTGCCAATATGCTGATTCAACGCCAGCGATATTGGAGTTA
1 -GAAGGTGCCAATGTGCTGATTCAAGGCCAGCGATATTGGACTTA
* * *
1055191 -AAGGTGCCATTGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGA
1 GAAGGTGCCAATGTGCTGATTCAAGGCCAGCGATATTGGACTT----A
* * *
1055238 TGAAGGTGCCAATATGCTGATTCAAGGCCAACGATATTGGTCTTA
1 -GAAGGTGCCAATGTGCTGATTCAAGGCCAGCGATATTGGACTTA
1055283 GAAGG
1 GAAGG
1055288 GTTGCCACCG
Statistics
Matches: 232, Mismatches: 31, Indels: 36
0.78 0.10 0.12
Matches are distributed among these distances:
43 112 0.48
44 5 0.02
45 3 0.01
47 3 0.01
49 109 0.47
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.26
Consensus pattern (44 bp):
GAAGGTGCCAATGTGCTGATTCAAGGCCAGCGATATTGGACTTA
Found at i:1055112 original size:92 final size:92
Alignment explanation
Indices: 1054955--1055287 Score: 576
Period size: 92 Copynumber: 3.6 Consensus size: 92
1054945 CTTAGGAATG
*
1054955 TTAAAGATGAAGGTGCCAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGT
1 TTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGT
*
1055020 GCTGATTCAAGGCCAACTACATTGGAC
66 GCTGATTCAAGGCCAGCTACATTGGAC
* *
1055047 TTAAAGATGAAGGTACCAATATGCTGATTCAAGGCCAGTGATATTGGACTTAAAGGTGCCAATGT
1 TTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGT
1055112 GCTGATTCAAGGCCAGCTACATTGGAC
66 GCTGATTCAAGGCCAGCTACATTGGAC
* * *
1055139 TTAAAGATGAAGGTGCCAATATGCTGATTCAACGCCAGCGATATTGGAGTTAAAGGTGCCATTGT
1 TTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGT
1055204 GCTGATTCAAGGCCAGCTACATTGGAC
66 GCTGATTCAAGGCCAGCTACATTGGAC
* *
1055231 TTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAACGATATTGGTCTTAGAAGG
1 TTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTA-AAGG
1055288 GTTGCCACCG
Statistics
Matches: 227, Mismatches: 13, Indels: 1
0.94 0.05 0.00
Matches are distributed among these distances:
92 223 0.98
93 4 0.02
ACGTcount: A:0.31, C:0.17, G:0.26, T:0.26
Consensus pattern (92 bp):
TTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGT
GCTGATTCAAGGCCAGCTACATTGGAC
Found at i:1055207 original size:135 final size:131
Alignment explanation
Indices: 1054964--1055287 Score: 321
Period size: 135 Copynumber: 2.4 Consensus size: 131
1054954 GTTAAAGATG
* *
1054964 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGTGCTGATTCA
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGGTGCCAATATGCTGATTCA
* * *
1055029 AGGCCAACTACATTGGACTTAAAGATGAAGGTACCAATATGCTGATTCAAGGCCAG-TGATATTG
66 ACGCCAACGACATTGGACTT--A-A-GAAGGTACCAATATGCTGATTCAAGGCCAGCT-ACATTG
1055093 GACTTA
126 GACTTA
*
1055099 AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCT
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTT----A--AAGGTGCCAATATGCT
* * * * * *
1055164 GATTCAACGCCAGCGATATTGGAGTT-A-AAGGTGCCATTGTGCTGATTCAAGGCCAGCTACATT
60 GATTCAACGCCAACGACATTGGACTTAAGAAGGTACCAATATGCTGATTCAAGGCCAGCTACATT
1055227 GGACTTAAAGA
125 GGACTT----A
* * * *
1055238 TGAAGGTGCCAATATGCTGATTCAAGGCCAACGATATTGGTCTTAGAAGG
1 --AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTA-AAGG
1055288 GTTGCCACCG
Statistics
Matches: 159, Mismatches: 17, Indels: 25
0.79 0.08 0.12
Matches are distributed among these distances:
135 76 0.48
136 6 0.04
137 2 0.01
139 2 0.01
141 73 0.46
ACGTcount: A:0.31, C:0.18, G:0.26, T:0.26
Consensus pattern (131 bp):
AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGGTGCCAATATGCTGATTCA
ACGCCAACGACATTGGACTTAAGAAGGTACCAATATGCTGATTCAAGGCCAGCTACATTGGACTT
A
Found at i:1055328 original size:32 final size:32
Alignment explanation
Indices: 1055285--1055807 Score: 673
Period size: 32 Copynumber: 16.2 Consensus size: 32
1055275 TGGTCTTAGA
1055285 AGGGTTGCCACCGACTTGTGTGGGCTTTAAAG
1 AGGGTTGCCACCGACTTGTGTGGGCTTTAAAG
*
1055317 AGGGTTTCCACCGACTTGTGTGGGCTTTAAAG
1 AGGGTTGCCACCGACTTGTGTGGGCTTTAAAG
* *
1055349 AGGGTTACCACCGACTTGTGTGGGCTTT-GAG
1 AGGGTTGCCACCGACTTGTGTGGGCTTTAAAG
* *
1055380 AAGGGTTGCCACCGACTTGTGTAGGCTTTAGAAA
1 -AGGGTTGCCACCGACTTGTGTGGGCTTTA-AAG
* * *
1055414 AAGGTTGCCACCAACTTGTGTGGGCTTTGGAA-
1 AGGGTTGCCACCGACTTGTGTGGGCTTT-AAAG
1055446 AGGGTTGCCACCGACTTGTGTGGGCTTTAGAA-
1 AGGGTTGCCACCGACTTGTGTGGGCTTTA-AAG
*
1055478 AGGGTTGCCACCGACTTGTGTGGGCTTTGGAA-
1 AGGGTTGCCACCGACTTGTGTGGGCTTT-AAAG
1055510 AGGGTTGCCACCGACTTGTGTGGGCTTT-AAG
1 AGGGTTGCCACCGACTTGTGTGGGCTTTAAAG
1055541 AAGGGTTGCCACCGACTTGTGTGGGCTTTAGAAG
1 -AGGGTTGCCACCGACTTGTGTGGGCTTTA-AAG
* * *
1055575 AAGGTTACCACCGACTTGTGTGGGCTTTAGAG
1 AGGGTTGCCACCGACTTGTGTGGGCTTTAAAG
* *
1055607 AAGGGTTGCCACCAACTTGTGTGGGCTTTGGAA-
1 -AGGGTTGCCACCGACTTGTGTGGGCTTT-AAAG
*
1055640 AGGGTTGCCACCGACTTGTGTGGGCTTTAGAAA
1 AGGGTTGCCACCGACTTGTGTGGGCTTTA-AAG
* *
1055673 AAGGTTGCCACCGACTTGTGTGGGCTTTAGAG
1 AGGGTTGCCACCGACTTGTGTGGGCTTTAAAG
*
1055705 AAGGGTTGCCACCGACTTGTGTGGGCTTTGGAA-
1 -AGGGTTGCCACCGACTTGTGTGGGCTTT-AAAG
** *
1055738 AGGGTTGCCACCGACTTGTGTGATCTTTAGAAA
1 AGGGTTGCCACCGACTTGTGTGGGCTTTA-AAG
* *
1055771 AAGGTTGCCACCGACTTGTGTGGGCTTTAAAA
1 AGGGTTGCCACCGACTTGTGTGGGCTTTAAAG
1055803 AGGGT
1 AGGGT
1055808 GAAAGATGCC
Statistics
Matches: 435, Mismatches: 38, Indels: 36
0.85 0.07 0.07
Matches are distributed among these distances:
30 2 0.00
31 2 0.00
32 265 0.61
33 160 0.37
34 6 0.01
ACGTcount: A:0.20, C:0.18, G:0.33, T:0.28
Consensus pattern (32 bp):
AGGGTTGCCACCGACTTGTGTGGGCTTTAAAG
Found at i:1055450 original size:65 final size:65
Alignment explanation
Indices: 1055284--1055807 Score: 774
Period size: 65 Copynumber: 8.1 Consensus size: 65
1055274 TTGGTCTTAG
* *
1055284 AAGGGTTGCCACCGACTTGTGTGGGCTTT-AAAGAGGGTTTCCACCGACTTGTGTGGGCTTTA-A
1 AAGGGTTGCCACCGACTTGTGTGGGCTTTGGAA-AGGGTTGCCACCGACTTGTGTGGGCTTTAGA
1055347 A
65 A
* * *
1055348 GAGGGTTACCACCGACTTGTGTGGGCTTT-GAGAAGGGTTGCCACCGACTTGTGTAGGCTTTAGA
1 AAGGGTTGCCACCGACTTGTGTGGGCTTTGGA-AAGGGTTGCCACCGACTTGTGTGGGCTTTAGA
1055412 A
65 A
* *
1055413 AAAGGTTGCCACCAACTTGTGTGGGCTTTGGAAAGGGTTGCCACCGACTTGTGTGGGCTTTAG-A
1 AAGGGTTGCCACCGACTTGTGTGGGCTTTGGAAAGGGTTGCCACCGACTTGTGTGGGCTTTAGAA
*
1055477 AAGGGTTGCCACCGACTTGTGTGGGCTTTGGAAAGGGTTGCCACCGACTTGTGTGGGCTTTA-AG
1 AAGGGTTGCCACCGACTTGTGTGGGCTTTGGAAAGGGTTGCCACCGACTTGTGTGGGCTTTAGAA
* * *
1055541 AAGGGTTGCCACCGACTTGTGTGGGCTTTAGAAGAAGGTTACCACCGACTTGTGTGGGCTTTAGA
1 AAGGGTTGCCACCGACTTGTGTGGGCTTTGGAA-AGGGTTGCCACCGACTTGTGTGGGCTTTAGA
*
1055606 G
65 A
*
1055607 AAGGGTTGCCACCAACTTGTGTGGGCTTTGGAAAGGGTTGCCACCGACTTGTGTGGGCTTTAGAA
1 AAGGGTTGCCACCGACTTGTGTGGGCTTTGGAAAGGGTTGCCACCGACTTGTGTGGGCTTTAGAA
* * *
1055672 AAAGGTTGCCACCGACTTGTGTGGGCTTTAGAGAAGGGTTGCCACCGACTTGTGTGGGCTTT-GG
1 AAGGGTTGCCACCGACTTGTGTGGGCTTTGGA-AAGGGTTGCCACCGACTTGTGTGGGCTTTAGA
1055736 A
65 A
** * *
1055737 AAGGGTTGCCACCGACTTGTGTGATCTTTAGAAAAAGGTTGCCACCGACTTGTGTGGGCTTTA-A
1 AAGGGTTGCCACCGACTTGTGTGGGCTTT-GGAAAGGGTTGCCACCGACTTGTGTGGGCTTTAGA
1055801 A
65 A
1055802 AAGGGT
1 AAGGGT
1055808 GAAAGATGCC
Statistics
Matches: 419, Mismatches: 32, Indels: 17
0.90 0.07 0.04
Matches are distributed among these distances:
64 148 0.35
65 206 0.49
66 65 0.16
ACGTcount: A:0.20, C:0.18, G:0.33, T:0.28
Consensus pattern (65 bp):
AAGGGTTGCCACCGACTTGTGTGGGCTTTGGAAAGGGTTGCCACCGACTTGTGTGGGCTTTAGAA
Found at i:1055643 original size:98 final size:98
Alignment explanation
Indices: 1055282--1055807 Score: 798
Period size: 98 Copynumber: 5.4 Consensus size: 98
1055272 TATTGGTCTT
* *
1055282 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAAAG-AGGGTTTCCACCGACTTGTGTGGGCTTT-
1 AGAA-GGTTGCCACCGACTTGTGTGGGCTTTAGAGAAGGGTTGCCACCGACTTGTGTGGGCTTTG
* *
1055345 AAAGAGGGTTACCACCGACTTGTGTGGGCTTT-G-
65 GAA-AGGGTTGCCACCGACTTGTGTGGGCTTTAGA
* * * *
1055378 AGAAGGGTTGCCACCGACTTGTGTAGGCTTTAGAAAAAGGTTGCCACCAACTTGTGTGGGCTTTG
1 AGAA-GGTTGCCACCGACTTGTGTGGGCTTTAGAGAAGGGTTGCCACCGACTTGTGTGGGCTTTG
1055443 GAAAGGGTTGCCACCGACTTGTGTGGGCTTTAGA
65 GAAAGGGTTGCCACCGACTTGTGTGGGCTTTAGA
* * *
1055477 A-AGGGTTGCCACCGACTTGTGTGGGCTTTGGA-AAGGGTTGCCACCGACTTGTGTGGGCTTT-A
1 AGAAGGTTGCCACCGACTTGTGTGGGCTTTAGAGAAGGGTTGCCACCGACTTGTGTGGGCTTTGG
1055539 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAGA
66 A-AAGGGTTGCCACCGACTTGTGTGGGCTTTAGA
* *
1055573 AGAAGGTTACCACCGACTTGTGTGGGCTTTAGAGAAGGGTTGCCACCAACTTGTGTGGGCTTTGG
1 AGAAGGTTGCCACCGACTTGTGTGGGCTTTAGAGAAGGGTTGCCACCGACTTGTGTGGGCTTTGG
1055638 AAAGGGTTGCCACCGACTTGTGTGGGCTTTAGA
66 AAAGGGTTGCCACCGACTTGTGTGGGCTTTAGA
*
1055671 AAAAGGTTGCCACCGACTTGTGTGGGCTTTAGAGAAGGGTTGCCACCGACTTGTGTGGGCTTTGG
1 AGAAGGTTGCCACCGACTTGTGTGGGCTTTAGAGAAGGGTTGCCACCGACTTGTGTGGGCTTTGG
**
1055736 AAAGGGTTGCCACCGACTTGTGTGATCTTTAGA
66 AAAGGGTTGCCACCGACTTGTGTGGGCTTTAGA
* *
1055769 AAAAGGTTGCCACCGACTTGTGTGGGCTTTA-AAAAGGGT
1 AGAAGGTTGCCACCGACTTGTGTGGGCTTTAGAGAAGGGT
1055808 GAAAGATGCC
Statistics
Matches: 397, Mismatches: 25, Indels: 15
0.91 0.06 0.03
Matches are distributed among these distances:
95 1 0.00
96 92 0.23
97 114 0.29
98 188 0.47
99 2 0.01
ACGTcount: A:0.21, C:0.18, G:0.33, T:0.28
Consensus pattern (98 bp):
AGAAGGTTGCCACCGACTTGTGTGGGCTTTAGAGAAGGGTTGCCACCGACTTGTGTGGGCTTTGG
AAAGGGTTGCCACCGACTTGTGTGGGCTTTAGA
Found at i:1055920 original size:34 final size:34
Alignment explanation
Indices: 1055809--1056162 Score: 204
Period size: 34 Copynumber: 10.9 Consensus size: 34
1055799 AAAAAGGGTG
* * *
1055809 AAAGA-TGCCACGAAGTTGTGGACTTAAAAGGAA
1 AAAGAGTGCCACGGAGTTGTGGATTTAGAAGGAA
* *
1055842 CAAG-GTGCCACGGAGTTGTGGGCTTT-GAA--AA
1 AAAGAGTGCCACGGAGTTGT-GGATTTAGAAGGAA
*
1055873 GAAG-GTGCCACGGAGTTGTGGATTTAGAAGGAA
1 AAAGAGTGCCACGGAGTTGTGGATTTAGAAGGAA
**
1055906 AAAGAGTGCCACGGAGTTGTGGGCTT-------A
1 AAAGAGTGCCACGGAGTTGTGGATTTAGAAGGAA
* *
1055933 AAAGGGTGCCACGGAGTTGTGGACTTAGAAGGAA
1 AAAGAGTGCCACGGAGTTGTGGATTTAGAAGGAA
* **
1055967 AAAAAGTGCCACGGAGTTGTGGGCTTAGAAGGAA
1 AAAGAGTGCCACGGAGTTGTGGATTTAGAAGGAA
* *
1056001 AAAGACTGCCACGGAGTTGTGGGCTTT------AA
1 AAAGAGTGCCACGGAGTTGT-GGATTTAGAAGGAA
**
1056030 AAAGAGTGCCATAGAGTTGTGGACTTTAAGAAGG--
1 AAAGAGTGCCACGGAGTTGTGGA-TTT-AGAAGGAA
* ** * *
1056064 AAAGA-TGCCACTGAGCCGTGGGCTTTGGAAAGGAA
1 AAAGAGTGCCACGGAGTTGT-GGATTTAG-AAGGAA
* *
1056099 AAAGA-TGCCACAGAGTTGTGGGCTTT-GAA--AA
1 AAAGAGTGCCACGGAGTTGT-GGATTTAGAAGGAA
* *
1056130 GAA-AGTGCCACGGAGTCGTGGACTTTAAGAAGG
1 AAAGAGTGCCACGGAGTTGTGGA-TTT-AGAAGG
1056163 TATTTGAAGA
Statistics
Matches: 253, Mismatches: 36, Indels: 62
0.72 0.10 0.18
Matches are distributed among these distances:
27 25 0.10
28 2 0.01
29 22 0.09
30 8 0.03
31 42 0.17
32 1 0.00
33 45 0.18
34 81 0.32
35 27 0.11
ACGTcount: A:0.32, C:0.13, G:0.34, T:0.20
Consensus pattern (34 bp):
AAAGAGTGCCACGGAGTTGTGGATTTAGAAGGAA
Found at i:1055961 original size:61 final size:61
Alignment explanation
Indices: 1055814--1055998 Score: 273
Period size: 61 Copynumber: 3.0 Consensus size: 61
1055804 GGGTGAAAGA
* * *
1055814 TGCCACGAAGTTGTGGACTTAAAAGGAACAAG-GTGCCACGGAGTTGTGGGCTTTGAAAAGAAGG
1 TGCCACGGAGTTGTGGACTTAGAAGGAAAAAGAGTGCCACGGAGTTGTGGGC-TT-AAAAG--GG
*
1055878 TGCCACGGAGTTGTGGATTTAGAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTAAAAGGG
1 TGCCACGGAGTTGTGGACTTAGAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTAAAAGGG
* *
1055939 TGCCACGGAGTTGTGGACTTAGAAGGAAAAAAAGTGCCACGGAGTTGTGGGCTTAGAAGG
1 TGCCACGGAGTTGTGGACTTAGAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTAAAAGG
1055999 AAAAAGACTG
Statistics
Matches: 113, Mismatches: 7, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
61 59 0.52
63 5 0.04
64 30 0.27
65 19 0.17
ACGTcount: A:0.30, C:0.13, G:0.36, T:0.21
Consensus pattern (61 bp):
TGCCACGGAGTTGTGGACTTAGAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTAAAAGGG
Found at i:1055997 original size:95 final size:96
Alignment explanation
Indices: 1055809--1056154 Score: 339
Period size: 95 Copynumber: 3.6 Consensus size: 96
1055799 AAAAAGGGTG
* * * * * *
1055809 AAAGATGCCACGAAGTTGTGGACTTAAAAGGAACAAGGTGCCACGGAGTTGTGGGCTTTG-A--A
1 AAAGATGCCACGGAGTTGTGGGCTTTAAA--AA-GA-GTGCCACGGAGTTGTGGACTTAGAAGGA
* * **
1055871 AAGAAGGTGCCACGGAGTTGTGGATTTAGAAGGAA
62 AAAAAAGTGCCACGGAGTTGTGGGCTTAGAAGGAA
*
1055906 AAAGAGTGCCACGGAGTTGTGGGC-TT-AAAAGGGTGCCACGGAGTTGTGGACTTAGAAGGAAAA
1 AAAGA-TGCCACGGAGTTGTGGGCTTTAAAAAGAGTGCCACGGAGTTGTGGACTTAGAAGGAAAA
1055969 AAAGTGCCACGGAGTTGTGGGCTTAGAAGGAA
65 AAAGTGCCACGGAGTTGTGGGCTTAGAAGGAA
**
1056001 AAAGACTGCCACGGAGTTGTGGGCTTTAAAAAGAGTGCCATAGAGTTGTGGACTTTAAGAAGG--
1 AAAGA-TGCCACGGAGTTGTGGGCTTTAAAAAGAGTGCCACGGAGTTGTGGAC-TT-AGAAGGAA
* * ** *
1056064 AAAGA-TGCCACTGAGCCGTGGGCTTTGGAAAGGAA
63 AAAAAGTGCCACGGAGTTGTGGGC-TTAG-AAGGAA
* * *
1056099 AAAGATGCCACAGAGTTGTGGGCTTTGAAAAGAAAGTGCCACGGAGTCGTGGACTT
1 AAAGATGCCACGGAGTTGTGGGCTTT-AAAA-AGAGTGCCACGGAGTTGTGGACTT
1056155 TAAGAAGGTA
Statistics
Matches: 212, Mismatches: 25, Indels: 23
0.82 0.10 0.09
Matches are distributed among these distances:
92 21 0.10
93 1 0.00
94 2 0.01
95 55 0.26
96 19 0.09
97 55 0.26
98 35 0.17
99 24 0.11
ACGTcount: A:0.32, C:0.14, G:0.34, T:0.21
Consensus pattern (96 bp):
AAAGATGCCACGGAGTTGTGGGCTTTAAAAAGAGTGCCACGGAGTTGTGGACTTAGAAGGAAAAA
AAGTGCCACGGAGTTGTGGGCTTAGAAGGAA
Found at i:1056033 original size:29 final size:29
Alignment explanation
Indices: 1055999--1056058 Score: 84
Period size: 29 Copynumber: 2.1 Consensus size: 29
1055989 GCTTAGAAGG
* *
1055999 AAAAAGACTGCCACGGAGTTGTGGGCTTT
1 AAAAAGACTGCCACAGAGTTGTGGACTTT
* *
1056028 AAAAAGAGTGCCATAGAGTTGTGGACTTT
1 AAAAAGACTGCCACAGAGTTGTGGACTTT
1056057 AA
1 AA
1056059 GAAGGAAAGA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.33, C:0.13, G:0.28, T:0.25
Consensus pattern (29 bp):
AAAAAGACTGCCACAGAGTTGTGGACTTT
Found at i:1056068 original size:63 final size:62
Alignment explanation
Indices: 1055965--1056157 Score: 189
Period size: 63 Copynumber: 3.0 Consensus size: 62
1055955 ACTTAGAAGG
* *
1055965 AAAAAAAGTGCCACGGAGTTGTGGGC-TT-AGAAGGAAAAAGACTGCCACGGAGTTGTGGGCTTT
1 AAAAAAAGTGCCACAGAGTTGTGGGCTTTAAGAAGG--AAAGA-TGCCACGGAGTCGTGGGCTTT
* * * * *
1056028 AAAAAGAGTGCCATAGAGTTGTGGACTTTAAGAAGGAAAGATGCCACTGAGCCGTGGGCTTT
1 AAAAAAAGTGCCACAGAGTTGTGGGCTTTAAGAAGGAAAGATGCCACGGAGTCGTGGGCTTT
*
1056090 GGAAAGGAAAAAGATGCCACAGAGTTGTGGGCTTTGAA-AA-GAAAG-TGCCACGGAGTCGTGGA
1 ---AA--AAAAAG-TGCCACAGAGTTGTGGGCTTT-AAGAAGGAAAGATGCCACGGAGTCGTGGG
1056152 CTTT
59 CTTT
1056156 AA
1 AA
1056158 GAAGGTATTT
Statistics
Matches: 108, Mismatches: 13, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
62 18 0.17
63 29 0.27
64 2 0.02
65 8 0.07
66 18 0.17
67 10 0.09
68 21 0.19
69 2 0.02
ACGTcount: A:0.33, C:0.14, G:0.32, T:0.21
Consensus pattern (62 bp):
AAAAAAAGTGCCACAGAGTTGTGGGCTTTAAGAAGGAAAGATGCCACGGAGTCGTGGGCTTT
Found at i:1056106 original size:35 final size:35
Alignment explanation
Indices: 1056064--1056130 Score: 98
Period size: 35 Copynumber: 1.9 Consensus size: 35
1056054 TTTAAGAAGG
* *
1056064 AAAGATGCCACTGAGCCGTGGGCTTTGGAAAGGAA
1 AAAGATGCCACAGAGCCGTGGGCTTTGAAAAGGAA
**
1056099 AAAGATGCCACAGAGTTGTGGGCTTTGAAAAG
1 AAAGATGCCACAGAGCCGTGGGCTTTGAAAAG
1056131 AAAGTGCCAC
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
35 28 1.00
ACGTcount: A:0.33, C:0.15, G:0.33, T:0.19
Consensus pattern (35 bp):
AAAGATGCCACAGAGCCGTGGGCTTTGAAAAGGAA
Found at i:1056108 original size:97 final size:98
Alignment explanation
Indices: 1055846--1056162 Score: 341
Period size: 95 Copynumber: 3.3 Consensus size: 98
1055836 AAGGAACAAG
* * * ** **
1055846 GTGCCACGGAGTTGTGGGCTTT--GAA--AAGAAGGTGCCACGGAGTTGTGGATTTAGAAGGAAA
1 GTGCCACGGAGTTGTGGACTTTAAGAAGGAAAAAAGTGCCACGGAGCCGTGGGCTTAGAAGGAAA
* *
1055907 AAGAGTGCCACGGAGTTGTGGGC-TT-AAAAGG
66 AAGACTGCCACGGAGTTGTGGGCTTTAAAAAGA
**
1055938 GTGCCACGGAGTTGTGGAC-TT-AGAAGGAAAAAAAGTGCCACGGAGTTGTGGGCTTAGAAGGAA
1 GTGCCACGGAGTTGTGGACTTTAAGAAGG-AAAAAAGTGCCACGGAGCCGTGGGCTTAGAAGGAA
1056001 AAAGACTGCCACGGAGTTGTGGGCTTTAAAAAGA
65 AAAGACTGCCACGGAGTTGTGGGCTTTAAAAAGA
** * * *
1056035 GTGCCATAGAGTTGTGGACTTTAAGAAGG-AAAGA-TGCCACTGAGCCGTGGGCTTTGGAAAGGA
1 GTGCCACGGAGTTGTGGACTTTAAGAAGGAAAAAAGTGCCACGGAGCCGTGGGC-TTAG-AAGGA
* *
1056098 AAAAGA-TGCCACAGAGTTGTGGGCTTTGAAAAGAAA
64 AAAAGACTGCCACGGAGTTGTGGGCTTT-AAAA-AGA
*
1056134 GTGCCACGGAGTCGTGGACTTTAAGAAGG
1 GTGCCACGGAGTTGTGGACTTTAAGAAGG
1056163 TATTTGAAGA
Statistics
Matches: 194, Mismatches: 19, Indels: 17
0.84 0.08 0.07
Matches are distributed among these distances:
91 2 0.01
92 21 0.11
95 54 0.28
96 17 0.09
97 49 0.25
98 17 0.09
99 34 0.18
ACGTcount: A:0.31, C:0.13, G:0.35, T:0.21
Consensus pattern (98 bp):
GTGCCACGGAGTTGTGGACTTTAAGAAGGAAAAAAGTGCCACGGAGCCGTGGGCTTAGAAGGAAA
AAGACTGCCACGGAGTTGTGGGCTTTAAAAAGA
Found at i:1056114 original size:68 final size:67
Alignment explanation
Indices: 1055835--1056155 Score: 221
Period size: 61 Copynumber: 5.0 Consensus size: 67
1055825 TGTGGACTTA
* * * * **
1055835 AAAGGAACAAG-GTGCCACGGAGTTGTGGGCTTTGAAAAGAAGGTGCCACGGAGTTGTGGA-TTT
1 AAAGGAAAAAGAGTGCCACAGAGTTGTGGACTTTGAAAAGAAAGTGCCACGGAGCCGTGGACTTT
*
1055898 AG
66 GG
* * * **
1055900 -AAGGAAAAAGAGTGCCACGGAGTTGTGGGC-TT-AAAAG--GGTGCCACGGAGTTGTGGAC-TT
1 AAAGGAAAAAGAGTGCCACAGAGTTGTGGACTTTGAAAAGAAAGTGCCACGGAGCCGTGGACTTT
*
1055959 AG
66 GG
* * * * ** *
1055961 -AAGGAAAAAAAGTGCCACGGAGTTGTGGGCTTAGAAGGAA-AAAGACTGCCACGGAGTTGTGGG
1 AAAGGAAAAAGAGTGCCACAGAGTTGTGGACTTTGAA--AAGAAAG--TGCCACGGAGCCGTGGA
1056024 CTTT--
62 CTTTGG
* * *
1056028 -----AAAAAGAGTGCCATAGAGTTGTGGACTTT-AAGAAGGAAAGATGCCACTGAGCCGTGGGC
1 AAAGGAAAAAGAGTGCCACAGAGTTGTGGACTTTGAA-AA-GAAAG-TGCCACGGAGCCGTGGAC
1056087 TTTGG
63 TTTGG
* *
1056092 AAAGGAAAAAGA-TGCCACAGAGTTGTGGGCTTTGAAAAGAAAGTGCCACGGAGTCGTGGACTTT
1 AAAGGAAAAAGAGTGCCACAGAGTTGTGGACTTTGAAAAGAAAGTGCCACGGAGCCGTGGACTTT
1056156 AAGAAGGTAT
Statistics
Matches: 216, Mismatches: 19, Indels: 41
0.78 0.07 0.15
Matches are distributed among these distances:
61 55 0.25
62 21 0.10
63 35 0.16
64 11 0.05
65 21 0.10
66 19 0.09
67 5 0.02
68 38 0.18
69 11 0.05
ACGTcount: A:0.31, C:0.13, G:0.35, T:0.21
Consensus pattern (67 bp):
AAAGGAAAAAGAGTGCCACAGAGTTGTGGACTTTGAAAAGAAAGTGCCACGGAGCCGTGGACTTT
GG
Found at i:1059810 original size:28 final size:28
Alignment explanation
Indices: 1059770--1059841 Score: 92
Period size: 28 Copynumber: 2.6 Consensus size: 28
1059760 GGAATAAAGC
**
1059770 CGGGGTTGGAGTATCCCCTCGGA-AGTAA
1 CGGGGTTGGAGTATCCCCGAGGAGA-TAA
*
1059798 CGGGGTTGGAGTATCCCCGATGAGATAA
1 CGGGGTTGGAGTATCCCCGAGGAGATAA
*
1059826 CGAGGTTGGAGTATCC
1 CGGGGTTGGAGTATCC
1059842 TCGATTGTGA
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
28 38 0.97
29 1 0.03
ACGTcount: A:0.22, C:0.19, G:0.36, T:0.22
Consensus pattern (28 bp):
CGGGGTTGGAGTATCCCCGAGGAGATAA
Found at i:1062658 original size:47 final size:47
Alignment explanation
Indices: 1062589--1062733 Score: 166
Period size: 55 Copynumber: 2.9 Consensus size: 47
1062579 GACTAAAAAG
1062589 TGCCACCAACTCGTGTGGGCTTT-AAGAGGTGTCCTGCTCTTTGAGGA
1 TGCCACCAACTCGTGTGGGCTTTGAA-AGGTGTCCTGCTCTTTGAGGA
*
1062636 TGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGACTAGAAAA
1 TGCCACCAACTCGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGA-G----G---A
* * *
1062691 TGCCACCAACTTGTGTGGGCTTCGAAAGGGGTCCTGCTCTTTG
1 TGCCACCAACTCGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTG
1062734 GGGACTGAAA
Statistics
Matches: 86, Mismatches: 3, Indels: 10
0.87 0.03 0.10
Matches are distributed among these distances:
47 40 0.47
48 3 0.03
52 1 0.01
55 42 0.49
ACGTcount: A:0.19, C:0.23, G:0.29, T:0.30
Consensus pattern (47 bp):
TGCCACCAACTCGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGA
Found at i:1062917 original size:59 final size:59
Alignment explanation
Indices: 1062636--1063420 Score: 910
Period size: 59 Copynumber: 13.5 Consensus size: 59
1062626 TCTTTGAGGA
* **
1062636 TGCCACCAACTTGTGTGGGCTTT----G-AAAGGTGTCCTGCTCTTTGAGGACTAGAAAA
1 TGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCTGCTCTTTGAGGACT-GAAGG
* * * **
1062691 TGCCACCAACTTGTGTGGGC-TT---CG-AAAGGGGTCCTGCTCTTTGGGGACTGAAAAA
1 TGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCTGCTCTTTGAGGACTG-AAGG
* * * *
1062746 TGCCACCAACTTGTGTGGGC-TT---CG-AAAGGGGTCCTACTCTTTGGGGACTGAAAGG
1 TGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCTGCTCTTTGAGGACTG-AAGG
* * * * *
1062801 TGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCTTACTCTTTAAGGACTGAAGG
1 TGCCACCAACTTGTGTGGGCTTT-AAAAGAAAAGGCGTCCTGCTCTTTGAGGACTGAAGG
* *
1062861 TGCCACCAACTTGGGTGGGCTTTAAAAGAAAAGGCGTCCCGCTCTTTGAGGACTGAAGG
1 TGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCTGCTCTTTGAGGACTGAAGG
* * **
1062920 TGCCACCAACTTGTGTGGGCTTTAAAAGAAAATGCGTCCCGCTCTTTGAGGACTGAAAAA
1 TGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCTGCTCTTTGAGGACTG-AAGG
*
1062980 TGCCACCAACTTGTGTGGGCTTT-----AAAAGGCGTCCTGCTCTTTGGGGACTGAAAGG
1 TGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCTGCTCTTTGAGGACTG-AAGG
* * * *
1063035 TGCCACCAACTTGTGTGGGCTTTGAAAGGAAAAAGCATCCTGCTCTTTGAGGACTGAAGC
1 TGCCACCAACTTGTGTGGGCTTT-AAAAGAAAAGGCGTCCTGCTCTTTGAGGACTGAAGG
* * *
1063095 TACCACCAACTTGGGTGGGCTTTAAAAGAAAAGGCGTCCCGCTCTTTGAGGACTGAAGG
1 TGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCTGCTCTTTGAGGACTGAAGG
* *
1063154 TGCCACCAACTTATGTGGGCTTTAAAAGAAAAGGCGTCCCGCTCTTTGAGGACTGAAGG
1 TGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCTGCTCTTTGAGGACTGAAGG
* * * *
1063213 TGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGACGTCCCGCTCTTTAAGGATTGAAGG
1 TGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCTGCTCTTTGAGGACTGAAGG
* **
1063272 TGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCCGCTCTTTGAGGACTGGAAAA
1 TGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCTGCTCTTTGAGGACT-GAAGG
* * * * *
1063332 TGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCATCCTGCTCTTTAAGAATTGGGAA-G
1 TGCCACCAACTTGTGTGGGCTTTAAAA-GAAAAGGCGTCCTGCTCTTTGAGGACT--GAAGG
*
1063393 TGCCACCATCTTGTGTGGGCTTTAAAAG
1 TGCCACCAACTTGTGTGGGCTTTAAAAG
1063421 GTGTCCTGCT
Statistics
Matches: 653, Mismatches: 59, Indels: 31
0.88 0.08 0.04
Matches are distributed among these distances:
54 3 0.00
55 170 0.26
56 2 0.00
59 276 0.42
60 107 0.16
61 91 0.14
62 4 0.01
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (59 bp):
TGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCTGCTCTTTGAGGACTGAAGG
Found at i:1063036 original size:234 final size:235
Alignment explanation
Indices: 1062634--1063420 Score: 1021
Period size: 234 Copynumber: 3.4 Consensus size: 235
1062624 GCTCTTTGAG
* * * * **
1062634 GATGCCACCAACTTGTGTGGGCTTT----G-AAAGGTGTCCTGCTCTTTGAGGACTAGAAAATGC
1 GATGCCACCAACTTGGGTGGGCTTTAAAAGAAAAGGCGTCCCGCTCTTTGAGGACTGGAAGGTGC
* * * *
1062694 CACCAACTTGTGTGGGC-TT---CG-AAAGGGGTCCTGCTCTTTGGGGACTGAAAAATGCCACCA
66 CACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCCGCTCTTTGAGGACTGAAAAATGCCACCA
** * *
1062754 ACTTGTGTGGGCTTCGAAAGGGGTCCTACTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGG
131 ACTTGTGTGGGCTTTAAAAGGCGTCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGG
* * *
1062819 GCTTTGAAAAGAAAAAGCATCTTACTCTTTAAGGACTGAA
196 GCTTTGAAAAGAAAAAGCATCCTGCTCTTTGAGGACTGAA
*
1062859 GGTGCCACCAACTTGGGTGGGCTTTAAAAGAAAAGGCGTCCCGCTCTTTGAGGACT-GAAGGTGC
1 GATGCCACCAACTTGGGTGGGCTTTAAAAGAAAAGGCGTCCCGCTCTTTGAGGACTGGAAGGTGC
*
1062923 CACCAACTTGTGTGGGCTTTAAAAGAAAATGCGTCCCGCTCTTTGAGGACTGAAAAATGCCACCA
66 CACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCCGCTCTTTGAGGACTGAAAAATGCCACCA
1062988 ACTTGTGTGGGCTTTAAAAGGCGTCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGG
131 ACTTGTGTGGGCTTTAAAAGGCGTCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGG
*
1063053 GCTTTGAAAGGAAAAAGCATCCTGCTCTTTGAGGACTGAA
196 GCTTTGAAAAGAAAAAGCATCCTGCTCTTTGAGGACTGAA
* *
1063093 GCTACCACCAACTTGGGTGGGCTTTAAAAGAAAAGGCGTCCCGCTCTTTGAGGACT-GAAGGTGC
1 GATGCCACCAACTTGGGTGGGCTTTAAAAGAAAAGGCGTCCCGCTCTTTGAGGACTGGAAGGTGC
* **
1063157 CACCAACTTATGTGGGCTTTAAAAGAAAAGGCGTCCCGCTCTTTGAGGACTG-AAGGTGCCACCA
66 CACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCCGCTCTTTGAGGACTGAAAAATGCCACCA
* ** *
1063221 ACTTGTGTGGGCTTTAAAAGAAAAGACGTCCCGCTCTTTAAGGATTG-AAGGTGCCACCAACTTG
131 ACTTGTGTGGGCTTTAAAAG----G-CGTCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTG
* * *
1063285 TGTGGGCTTT-AAAAGAAAAGGCGTCCCGCTCTTTGAGGACTGGAA
191 TGTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGAGGACT-GAA
* * * * * * * *
1063330 AATGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCATCCTGCTCTTTAAGAATTGGGAA-GT
1 GATGCCACCAACTTGGGTGGGCTTTAAAA-GAAAAGGCGTCCCGCTCTTTGAGGACT-GGAAGGT
*
1063394 GCCACCATCTTGTGTGGGCTTTAAAAG
64 GCCACCAACTTGTGTGGGCTTTAAAAG
1063421 GTGTCCTGCT
Statistics
Matches: 498, Mismatches: 45, Indels: 24
0.88 0.08 0.04
Matches are distributed among these distances:
225 23 0.05
229 24 0.05
230 25 0.05
233 31 0.06
234 244 0.49
236 27 0.05
237 56 0.11
238 38 0.08
239 27 0.05
240 3 0.01
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (235 bp):
GATGCCACCAACTTGGGTGGGCTTTAAAAGAAAAGGCGTCCCGCTCTTTGAGGACTGGAAGGTGC
CACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCCGCTCTTTGAGGACTGAAAAATGCCACCA
ACTTGTGTGGGCTTTAAAAGGCGTCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGG
GCTTTGAAAAGAAAAAGCATCCTGCTCTTTGAGGACTGAA
Found at i:1064446 original size:32 final size:31
Alignment explanation
Indices: 1064410--1064477 Score: 75
Period size: 31 Copynumber: 2.2 Consensus size: 31
1064400 AAGCAGGTTC
* *
1064410 TTTTTCTTTT-CTCTCTTTTTCTTTGTTTTGT
1 TTTTTTTTTTGCTCTCTTTTTCTTTGCTTT-T
* * *
1064441 TTTTTTTTTTGCTTTTTTTTTTTTTGCTTTT
1 TTTTTTTTTTGCTCTCTTTTTCTTTGCTTTT
1064472 TTTTTT
1 TTTTTT
1064478 GAAGAGAAGG
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
31 16 0.52
32 15 0.48
ACGTcount: A:0.00, C:0.10, G:0.06, T:0.84
Consensus pattern (31 bp):
TTTTTTTTTTGCTCTCTTTTTCTTTGCTTTT
Found at i:1064451 original size:17 final size:16
Alignment explanation
Indices: 1064425--1064477 Score: 63
Period size: 17 Copynumber: 3.2 Consensus size: 16
1064415 CTTTTCTCTC
*
1064425 TTTTTCTTTGTTTTGTT
1 TTTTTTTTTGTTTT-TT
*
1064442 TTTTTTTTTG-CTTTT
1 TTTTTTTTTGTTTTTT
1064457 TTTTTTTTTGCTTTTTT
1 TTTTTTTTTG-TTTTTT
1064474 TTTT
1 TTTT
1064478 GAAGAGAAGG
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
15 12 0.39
16 2 0.06
17 17 0.55
ACGTcount: A:0.00, C:0.06, G:0.08, T:0.87
Consensus pattern (16 bp):
TTTTTTTTTGTTTTTT
Found at i:1064456 original size:27 final size:27
Alignment explanation
Indices: 1064426--1064478 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
1064416 TTTTCTCTCT
*
1064426 TTTTCTTTGTTTTGTTTTTTTTTTTGC
1 TTTTCTTTGTTTTGCTTTTTTTTTTGC
* *
1064453 TTTTTTTTTTTTTGCTTTTTTTTTTG
1 TTTTCTTTGTTTTGCTTTTTTTTTTG
1064479 AAGAGAAGGT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.00, C:0.06, G:0.09, T:0.85
Consensus pattern (27 bp):
TTTTCTTTGTTTTGCTTTTTTTTTTGC
Found at i:1064472 original size:14 final size:15
Alignment explanation
Indices: 1064440--1064477 Score: 76
Period size: 15 Copynumber: 2.5 Consensus size: 15
1064430 CTTTGTTTTG
1064440 TTTTTTTTTTTGCTT
1 TTTTTTTTTTTGCTT
1064455 TTTTTTTTTTTGCTT
1 TTTTTTTTTTTGCTT
1064470 TTTTTTTT
1 TTTTTTTT
1064478 GAAGAGAAGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.00, C:0.05, G:0.05, T:0.89
Consensus pattern (15 bp):
TTTTTTTTTTTGCTT
Found at i:1077068 original size:28 final size:28
Alignment explanation
Indices: 1077028--1077099 Score: 92
Period size: 28 Copynumber: 2.6 Consensus size: 28
1077018 GGAATAAAGC
**
1077028 CGGGGTTGGAGTATCCCCTCGGA-AGTAA
1 CGGGGTTGGAGTATCCCCGAGGAGA-TAA
*
1077056 CGGGGTTGGAGTATCCCCGATGAGATAA
1 CGGGGTTGGAGTATCCCCGAGGAGATAA
*
1077084 CGAGGTTGGAGTATCC
1 CGGGGTTGGAGTATCC
1077100 TCGATTGTGA
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
28 38 0.97
29 1 0.03
ACGTcount: A:0.22, C:0.19, G:0.36, T:0.22
Consensus pattern (28 bp):
CGGGGTTGGAGTATCCCCGAGGAGATAA
Found at i:1077166 original size:52 final size:50
Alignment explanation
Indices: 1077088--1077211 Score: 140
Period size: 51 Copynumber: 2.4 Consensus size: 50
1077078 AGATAACGAG
* * * * **
1077088 GTTGGAGTATCCTCGATTGTGAAAAATTGGTATTTTTGGAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTATG-AAAATTGGT-GTCTTAAAAATAAAATCGGA
* *
1077140 GTTGGAGTATCCCCCATTATAGAAAATTAGTGTCTTAAAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTAT-GAAAATTGGTGTCTTAAAAATAAAATCGGA
*
1077191 GTTGGAATATCCCCGATTATG
1 GTTGGAGTATCCCCGATTATG
1077212 GAGAATTGAG
Statistics
Matches: 61, Mismatches: 10, Indels: 4
0.81 0.13 0.05
Matches are distributed among these distances:
50 1 0.02
51 34 0.56
52 25 0.41
53 1 0.02
ACGTcount: A:0.34, C:0.12, G:0.22, T:0.32
Consensus pattern (50 bp):
GTTGGAGTATCCCCGATTATGAAAATTGGTGTCTTAAAAATAAAATCGGA
Found at i:1084961 original size:52 final size:52
Alignment explanation
Indices: 1084813--1084941 Score: 213
Period size: 52 Copynumber: 2.5 Consensus size: 52
1084803 CAAAATATGA
*
1084813 AAATTTGCCTGCATGTATCGATACATTTCATAGCGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
* * *
1084865 AAATTTGCTTGCATGTATCGATACATTTTATAGTGTATAGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
*
1084917 AAATTTGCCTCCATGTATCGATACA
1 AAATTTGCCTGCATGTATCGATACA
1084942 AAGATCAGTG
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
52 71 1.00
ACGTcount: A:0.29, C:0.19, G:0.18, T:0.35
Consensus pattern (52 bp):
AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
Found at i:1084968 original size:13 final size:13
Alignment explanation
Indices: 1084950--1084974 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1084940 CAAAGATCAG
1084950 TGTATCGATACAA
1 TGTATCGATACAA
1084963 TGTATCGATACA
1 TGTATCGATACA
1084975 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1085041 original size:19 final size:19
Alignment explanation
Indices: 1085017--1085081 Score: 79
Period size: 19 Copynumber: 3.7 Consensus size: 19
1085007 TAGCTTATAT
1085017 TGTATCGATACAAAACTTA
1 TGTATCGATACAAAACTTA
1085036 TGTATCGATAC---A--T-
1 TGTATCGATACAAAACTTA
*
1085049 TGTATCGATACAACACTTA
1 TGTATCGATACAAAACTTA
1085068 TGTATCGATACAAA
1 TGTATCGATACAAA
1085082 TCATTGAAAT
Statistics
Matches: 39, Mismatches: 1, Indels: 12
0.75 0.02 0.23
Matches are distributed among these distances:
13 11 0.28
14 1 0.03
16 2 0.05
18 1 0.03
19 24 0.62
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.32
Consensus pattern (19 bp):
TGTATCGATACAAAACTTA
Found at i:1085054 original size:13 final size:13
Alignment explanation
Indices: 1085036--1085060 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1085026 ACAAAACTTA
1085036 TGTATCGATACAT
1 TGTATCGATACAT
1085049 TGTATCGATACA
1 TGTATCGATACA
1085061 ACACTTATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1085054 original size:32 final size:32
Alignment explanation
Indices: 1085015--1085079 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
1085005 AGTAGCTTAT
1085015 ATTGTATCGATACAAAACTTATGTATCGATAC
1 ATTGTATCGATACAAAACTTATGTATCGATAC
*
1085047 ATTGTATCGATACAACACTTATGTATCGATAC
1 ATTGTATCGATACAAAACTTATGTATCGATAC
1085079 A
1 A
1085080 AATCATTGAA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.37, C:0.17, G:0.12, T:0.34
Consensus pattern (32 bp):
ATTGTATCGATACAAAACTTATGTATCGATAC
Found at i:1086237 original size:3 final size:3
Alignment explanation
Indices: 1086223--1086259 Score: 56
Period size: 3 Copynumber: 12.3 Consensus size: 3
1086213 GGAGTCAACT
* *
1086223 TCA TCG TCA TCA TCA TCA TCA TCA TCT TCA TCA TCA T
1 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA T
1086260 TGATGGTTGA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.27, C:0.32, G:0.03, T:0.38
Consensus pattern (3 bp):
TCA
Found at i:1087846 original size:13 final size:13
Alignment explanation
Indices: 1087828--1087879 Score: 70
Period size: 13 Copynumber: 4.0 Consensus size: 13
1087818 ACATTTCGCC
1087828 ATGTATCGATACA
1 ATGTATCGATACA
*
1087841 ATGTATCCATA-A
1 ATGTATCGATACA
*
1087853 ACTATATCGATACA
1 A-TGTATCGATACA
1087867 ATGTATCGATACA
1 ATGTATCGATACA
1087880 CTATATCAAT
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
12 2 0.06
13 29 0.88
14 2 0.06
ACGTcount: A:0.40, C:0.17, G:0.12, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1087867 original size:26 final size:26
Alignment explanation
Indices: 1087831--1087891 Score: 95
Period size: 26 Copynumber: 2.3 Consensus size: 26
1087821 TTTCGCCATG
1087831 TATCGATACAATGTATCCATAAACTA
1 TATCGATACAATGTATCCATAAACTA
* *
1087857 TATCGATACAATGTATCGATACACTA
1 TATCGATACAATGTATCCATAAACTA
*
1087883 TATCAATAC
1 TATCGATAC
1087892 TGAGTGAGTT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 32 1.00
ACGTcount: A:0.41, C:0.20, G:0.08, T:0.31
Consensus pattern (26 bp):
TATCGATACAATGTATCCATAAACTA
Found at i:1087886 original size:13 final size:13
Alignment explanation
Indices: 1087831--1087891 Score: 61
Period size: 13 Copynumber: 4.7 Consensus size: 13
1087821 TTTCGCCATG
*
1087831 TATCGATACAATG
1 TATCGATACAATA
*
1087844 TATCCATA-AACTA
1 TATCGATACAA-TA
*
1087857 TATCGATACAATG
1 TATCGATACAATA
*
1087870 TATCGATACACTA
1 TATCGATACAATA
*
1087883 TATCAATAC
1 TATCGATAC
1087892 TGAGTGAGTT
Statistics
Matches: 39, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
12 2 0.05
13 35 0.90
14 2 0.05
ACGTcount: A:0.41, C:0.20, G:0.08, T:0.31
Consensus pattern (13 bp):
TATCGATACAATA
Found at i:1093313 original size:29 final size:29
Alignment explanation
Indices: 1093280--1094231 Score: 687
Period size: 29 Copynumber: 33.4 Consensus size: 29
1093270 TGGAGTAACC
*
1093280 TTTCAAAGTCCACAAGTCAGTGGCATCCT
1 TTTCAAAGTCCACAAGTCAGTGGCACCCT
* * *
1093309 TTTCAAAGTCCACAAATCAGTGGTAGCCT
1 TTTCAAAGTCCACAAGTCAGTGGCACCCT
* * * *
1093338 TTTCAAAATCCACAAGTCAGTGGTAGCTT
1 TTTCAAAGTCCACAAGTCAGTGGCACCCT
** * * ***
1093367 TTTCAAAGTCTGCAAGTTAGTGGTAGTTT
1 TTTCAAAGTCCACAAGTCAGTGGCACCCT
** * *
1093396 TTTCAAAGTCTGCAAGTCAGTGGTATCCT
1 TTTCAAAGTCCACAAGTCAGTGGCACCCT
*
1093425 TTTCAAAGTCCACAAGTCAGTGGCACCTT
1 TTTCAAAGTCCACAAGTCAGTGGCACCCT
*
1093454 TTTCAAAATCCACAAGT-AGTGGCA-CCT
1 TTTCAAAGTCCACAAGTCAGTGGCACCCT
*
1093481 TTTCAAAG-CCTACAAGTCAGTAGCA-CCT
1 TTTCAAAGTCC-ACAAGTCAGTGGCACCCT
* * * *
1093509 TTTCAAAGTCTATAAGTTAGTGGTACCCT
1 TTTCAAAGTCCACAAGTCAGTGGCACCCT
* *
1093538 ATTCAAAG-CTCACATA-TCAATGGCACCC-
1 TTTCAAAGTC-CACA-AGTCAGTGGCACCCT
* *
1093566 TTTCAAAGCCCATAAGTCAGTGGCACCCT
1 TTTCAAAGTCCACAAGTCAGTGGCACCCT
* *
1093595 TTT-AGAG-CTCACAAGTCAATGGCACCCT
1 TTTCAAAGTC-CACAAGTCAGTGGCACCCT
* * * *
1093623 TTT-AAAGCCCACAAATTAGTAGCACCC-
1 TTTCAAAGTCCACAAGTCAGTGGCACCCT
* * *
1093650 TTTCAAAGCCCACGAGTCAATGGCACCCT
1 TTTCAAAGTCCACAAGTCAGTGGCACCCT
* * ** * *
1093679 ATTCAAAGCCCATGAGTCAATGGGACCCT
1 TTTCAAAGTCCACAAGTCAGTGGCACCCT
* * * *
1093708 TTT-TAAGTCCACATGTCAGTGACA-CCA
1 TTTCAAAGTCCACAAGTCAGTGGCACCCT
* * * * *
1093735 TTTCAAAGGCCACCAGTTAGTGACA-CTT
1 TTTCAAAGTCCACAAGTCAGTGGCACCCT
* * * *
1093763 TTTCACAGCCCACCAGTCAATGGCACCCT
1 TTTCAAAGTCCACAAGTCAGTGGCACCCT
* * * * **
1093792 GTTCAAAGCCCACATGTTAGTGGCATACT
1 TTTCAAAGTCCACAAGTCAGTGGCACCCT
* * *
1093821 TTTCAAAGTCCACAAGTCAATAGTACCCT
1 TTTCAAAGTCCACAAGTCAGTGGCACCCT
* *
1093850 TCTT-AAAGTCCATAAGTCAGTGGCATCCT
1 T-TTCAAAGTCCACAAGTCAGTGGCACCCT
* * * * *
1093879 TTTCAAAGTCCACAAGTTAATGGAATCTT
1 TTTCAAAGTCCACAAGTCAGTGGCACCCT
* * * *
1093908 TTTCAAAGTCCACAAGTCAATGGTAACAT
1 TTTCAAAGTCCACAAGTCAGTGGCACCCT
* * *
1093937 TTTCAAAGTCTACAAGTCAGTGGCATCTT
1 TTTCAAAGTCCACAAGTCAGTGGCACCCT
* * *
1093966 TTTCAAAGTCCACAAGTTAATGGCATCCT
1 TTTCAAAGTCCACAAGTCAGTGGCACCCT
* * *
1093995 TTTCAAAGTCCACAAGTTAATGGCATCCT
1 TTTCAAAGTCCACAAGTCAGTGGCACCCT
* **
1094024 TTTCGAAGTCTTCAAGTCAGTGGCACCCT
1 TTTCAAAGTCCACAAGTCAGTGGCACCCT
* * * *
1094053 TTTCAAAG-CC-C-A-TAACTTGTACCCT
1 TTTCAAAGTCCACAAGTCAGTGGCACCCT
*
1094078 TTTCAAAG-CCTACAAGTTAGTGGCA-CCT
1 TTTCAAAGTCC-ACAAGTCAGTGGCACCCT
* *
1094106 TTTCAAAGCCCATAAGTCAGTGGCACCCT
1 TTTCAAAGTCCACAAGTCAGTGGCACCCT
* * *
1094135 ATTT-AAAG-CCTACATGTTAGTGGCGCCC-
1 -TTTCAAAGTCC-ACAAGTCAGTGGCACCCT
*
1094163 TTTCAAAGCCCACATA-TCAGTGGCACCCT
1 TTTCAAAGTCCACA-AGTCAGTGGCACCCT
* * * * *
1094192 TTTTAAAGCCCACAAATTAGTAGCACCC-
1 TTTCAAAGTCCACAAGTCAGTGGCACCCT
1094220 TTTCAAAGTCCA
1 TTTCAAAGTCCA
1094232 GACGAGCTTG
Statistics
Matches: 746, Mismatches: 147, Indels: 61
0.78 0.15 0.06
Matches are distributed among these distances:
25 19 0.03
26 3 0.00
27 30 0.04
28 222 0.30
29 466 0.62
30 6 0.01
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.28
Consensus pattern (29 bp):
TTTCAAAGTCCACAAGTCAGTGGCACCCT
Found at i:1094082 original size:25 final size:27
Alignment explanation
Indices: 1094048--1094120 Score: 87
Period size: 25 Copynumber: 2.7 Consensus size: 27
1094038 AGTCAGTGGC
1094048 ACCCTTTTCAAAGCCCATAACTT-GT-
1 ACCCTTTTCAAAGCCCATAACTTAGTG
* * *
1094073 ACCCTTTTCAAAGCCTACAAGTTAGTG
1 ACCCTTTTCAAAGCCCATAACTTAGTG
*
1094100 GCACCTTTTCAAAGCCCATAA
1 AC-CCTTTTCAAAGCCCATAA
1094121 GTCAGTGGCA
Statistics
Matches: 39, Mismatches: 6, Indels: 3
0.81 0.12 0.06
Matches are distributed among these distances:
25 20 0.51
26 2 0.05
27 1 0.03
28 16 0.41
ACGTcount: A:0.30, C:0.30, G:0.11, T:0.29
Consensus pattern (27 bp):
ACCCTTTTCAAAGCCCATAACTTAGTG
Found at i:1095206 original size:20 final size:20
Alignment explanation
Indices: 1095164--1095217 Score: 72
Period size: 20 Copynumber: 2.6 Consensus size: 20
1095154 TTATATGATT
*
1095164 TGTATTGATACAACAAGTCAA
1 TGTATTGATAC-ATAAGTCAA
*
1095185 TGTATTGATACATAAGTGAA
1 TGTATTGATACATAAGTCAA
*
1095205 TGTATAGATACAT
1 TGTATTGATACAT
1095218 GCTAGCATTA
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
20 19 0.63
21 11 0.37
ACGTcount: A:0.41, C:0.09, G:0.17, T:0.33
Consensus pattern (20 bp):
TGTATTGATACATAAGTCAA
Found at i:1095301 original size:20 final size:21
Alignment explanation
Indices: 1095276--1095329 Score: 67
Period size: 21 Copynumber: 2.6 Consensus size: 21
1095266 CTAGAAAAAT
*
1095276 TGTATCGATACATA-AGTG-AA
1 TGTATCGATACATACTG-GCAA
*
1095296 TGTATCGATGCATACTGGCAA
1 TGTATCGATACATACTGGCAA
1095317 TGTATCGATACAT
1 TGTATCGATACAT
1095330 CACTTATTGT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
20 14 0.48
21 15 0.52
ACGTcount: A:0.33, C:0.15, G:0.20, T:0.31
Consensus pattern (21 bp):
TGTATCGATACATACTGGCAA
Found at i:1096203 original size:20 final size:21
Alignment explanation
Indices: 1096178--1096216 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
1096168 TCCTAACAAC
*
1096178 CCATGTT-CATTCATTTTATG
1 CCATGTTCCATGCATTTTATG
1096198 CCATGTTCCATGCATTTTA
1 CCATGTTCCATGCATTTTA
1096217 ATATGTCCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.21, C:0.23, G:0.10, T:0.46
Consensus pattern (21 bp):
CCATGTTCCATGCATTTTATG
Found at i:1097550 original size:97 final size:97
Alignment explanation
Indices: 1097365--1097636 Score: 336
Period size: 97 Copynumber: 2.8 Consensus size: 97
1097355 ATGAACATTT
* * **
1097365 TCAAGACTT-AATCTTT-TTTTTGCTTAAATTGTCATCATCACAAACACTCCAACCTTATTCCTC
1 TCAAGATTTAAAT-TTTATTTTTGCTTAAATTGTCATCATTAGGAACACTCCAACCTTATTCCTC
* *
1097428 TGAGGGGATACTCCCACGCCATTTTTAAACTCG
65 TGAGGGGATACTCCAACGCCATTTTTAAACTCA
* * *
1097461 TCAAGATTTAAATTTTATTTTTACTTAAATTGTCATCATTAGGAACACTTCAACCTTTTTCCTCT
1 TCAAGATTTAAATTTTATTTTTGCTTAAATTGTCATCATTAGGAACACTCCAACCTTATTCCTCT
* *
1097526 GAGGGGATACTCCAAC-CTCGTTTTTTAACTCA
66 GAGGGGATACTCCAACGC-CATTTTTAAACTCA
* * * * **
1097558 TCAAGATTTAAATCTTATTTTTGCTTAAATTGTAATCATTGGGGACACTCCAACCCCATTCCTCT
1 TCAAGATTTAAATTTTATTTTTGCTTAAATTGTCATCATTAGGAACACTCCAACCTTATTCCTCT
1097623 -AGGAGGATACTCCA
66 GAGG-GGATACTCCA
1097637 TCCGTGTTTT
Statistics
Matches: 152, Mismatches: 20, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
96 15 0.10
97 137 0.90
ACGTcount: A:0.28, C:0.24, G:0.11, T:0.37
Consensus pattern (97 bp):
TCAAGATTTAAATTTTATTTTTGCTTAAATTGTCATCATTAGGAACACTCCAACCTTATTCCTCT
GAGGGGATACTCCAACGCCATTTTTAAACTCA
Found at i:1098837 original size:79 final size:77
Alignment explanation
Indices: 1098617--1098860 Score: 204
Period size: 79 Copynumber: 3.1 Consensus size: 77
1098607 TTAAAACGGT
* * * * * * **
1098617 GTTGGCCAGGATAAAACCATACAAAGCAGCAAAGGAAAATTGACCAAGATAAAACCTTACAAGTC
1 GTTGGCCAGGA-CAAACCATACAAA-CAACAAAGGAAAATTGGCCTAGACAAAACCATATGAGTC
1098682 AACAAAGGAAAATA
64 AACAAAGGAAAATA
* *** * * * * ** *
1098696 GTTGGCTAGGACAAAGCCATGTGAACTAACAAAGGAAAGTT-GACTAAGTCCAAATTACATGAGT
1 GTTGGCCAGGACAAA-CCATACAAAC-AACAAAGGAAAATTGGCCT-AGACAAAACCATATGAGT
1098760 CAACAAAGGAAAATA
63 CAACAAAGGAAAATA
*
1098775 GTTGGCCAGGACGAAACTATACAAACAAACAAAGGAAAATTGGCCTAGACAAAACCATATGAGTC
1 GTTGGCCAGGAC-AAACCATACAAAC-AACAAAGGAAAATTGGCCTAGACAAAACCATATGAGTC
* *
1098840 AATGAAA-GAAAAAA
64 AA-CAAAGGAAAATA
1098854 GTTGGCC
1 GTTGGCC
1098861 TGGATAAAAC
Statistics
Matches: 125, Mismatches: 34, Indels: 12
0.73 0.20 0.07
Matches are distributed among these distances:
78 5 0.04
79 111 0.89
80 9 0.07
ACGTcount: A:0.47, C:0.17, G:0.20, T:0.16
Consensus pattern (77 bp):
GTTGGCCAGGACAAACCATACAAACAACAAAGGAAAATTGGCCTAGACAAAACCATATGAGTCAA
CAAAGGAAAATA
Found at i:1098870 original size:41 final size:41
Alignment explanation
Indices: 1098810--1098903 Score: 127
Period size: 41 Copynumber: 2.3 Consensus size: 41
1098800 CAAACAAAGG
* * *
1098810 AAAA-TTGGCCTAGACAAAACCATATGAGTCAATGAAAGAA
1 AAAAGTTGGCCTAGACAAAACCAAACGAGTCAACGAAAGAA
* *
1098850 AAAAGTTGGCCTGGATAAAACCAAACGAGTCAACGAAAGAA
1 AAAAGTTGGCCTAGACAAAACCAAACGAGTCAACGAAAGAA
*
1098891 AAGAGTTGGCCTA
1 AAAAGTTGGCCTA
1098904 AATGAAACCA
Statistics
Matches: 46, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
40 4 0.09
41 42 0.91
ACGTcount: A:0.47, C:0.16, G:0.21, T:0.16
Consensus pattern (41 bp):
AAAAGTTGGCCTAGACAAAACCAAACGAGTCAACGAAAGAA
Found at i:1099338 original size:86 final size:86
Alignment explanation
Indices: 1099026--1099349 Score: 257
Period size: 86 Copynumber: 3.8 Consensus size: 86
1099016 AATCAAAATA
* * * * * **
1099026 AAACCATACGAATCAATAAGTTAAAAAGGTGTTGGCCAAGATGAAACCATAAGAA-C--CAAGTT
1 AAACCATACGTACCAACAAGTTAGAAGGGTGTTGGCCAAGACAAAACCATAAGAACCATCAAGTT
* * * **
1099088 AGAAGGGTGTTGACTGGGGCG
66 AGAAGGGTATTGGCCGGGATG
* * * * * * *
1099109 AAATCATATGTACCAATAAGTTAAGAA-GGTGTTGTCCAGGACAAAACCATAAGAAGCAACAAGT
1 AAACCATACGTACCAACAAGTT-AGAAGGGTGTTGGCCAAGACAAAACCATAAGAACCATCAAGT
* **
1099173 TAAAAGGGTATTGGTGGGGATG
65 TAGAAGGGTATTGGCCGGGATG
** * ** *
1099195 AAACCATACAAACCAACAAGTTAGAAGGGCGTTGGTTGAA-ACAAAACTATACA-AACCATCAAG
1 AAACCATACGTACCAACAAGTTAGAAGGGTGTTGG-CCAAGACAAAACCATA-AGAACCATCAAG
**
1099258 TTAGAAGGGTATTGGCCAAGATG
64 TTAGAAGGGTATTGGCCGGGATG
* ** *
1099281 AAACCATACGTGCCAACAAGTTAGAAGGGTGTTGGCCAAGATGAAACCATACGAACCAAT-AAGT
1 AAACCATACGTACCAACAAGTTAGAAGGGTGTTGGCCAAGACAAAACCATAAGAACC-ATCAAGT
1099345 TAGAA
65 TAGAA
1099350 AAATGTTGGT
Statistics
Matches: 187, Mismatches: 44, Indels: 17
0.75 0.18 0.07
Matches are distributed among these distances:
83 42 0.22
84 4 0.02
85 6 0.03
86 131 0.70
87 4 0.02
ACGTcount: A:0.41, C:0.15, G:0.24, T:0.19
Consensus pattern (86 bp):
AAACCATACGTACCAACAAGTTAGAAGGGTGTTGGCCAAGACAAAACCATAAGAACCATCAAGTT
AGAAGGGTATTGGCCGGGATG
Found at i:1099347 original size:43 final size:43
Alignment explanation
Indices: 1099026--1099349 Score: 228
Period size: 43 Copynumber: 7.6 Consensus size: 43
1099016 AATCAAAATA
* * *
1099026 AAACCATACGAATCAATAAGTTAAAAAGGTGTTGGCCAAGATG
1 AAACCATACGAACCAATAAGTTAGAAGGGTGTTGGCCAAGATG
* * *** **
1099069 AAACCATAAGAACC---AAGTTAGAAGGGTGTTGACTGGGGCG
1 AAACCATACGAACCAATAAGTTAGAAGGGTGTTGGCCAAGATG
* * * * * **
1099109 AAATCATATGTACCAATAAGTTAAGAA-GGTGTTGTCCAGGACA
1 AAACCATACGAACCAATAAGTT-AGAAGGGTGTTGGCCAAGATG
* * * * * ****
1099152 AAACCATAAGAAGCAACAAGTTAAAAGGGTATTGGTGGGGATG
1 AAACCATACGAACCAATAAGTTAGAAGGGTGTTGGCCAAGATG
* * * ** **
1099195 AAACCATACAAACCAACAAGTTAGAAGGGCGTTGGTTGAA-ACA
1 AAACCATACGAACCAATAAGTTAGAAGGGTGTTGG-CCAAGATG
* * *
1099238 AAACTATACAAACC-ATCAAGTTAGAAGGGTATTGGCCAAGATG
1 AAACCATACGAACCAAT-AAGTTAGAAGGGTGTTGGCCAAGATG
** *
1099281 AAACCATACGTGCCAACAAGTTAGAAGGGTGTTGGCCAAGATG
1 AAACCATACGAACCAATAAGTTAGAAGGGTGTTGGCCAAGATG
1099324 AAACCATACGAACCAATAAGTTAGAA
1 AAACCATACGAACCAATAAGTTAGAA
1099350 AAATGTTGGT
Statistics
Matches: 214, Mismatches: 58, Indels: 18
0.74 0.20 0.06
Matches are distributed among these distances:
40 29 0.14
42 6 0.03
43 172 0.80
44 7 0.03
ACGTcount: A:0.41, C:0.15, G:0.24, T:0.19
Consensus pattern (43 bp):
AAACCATACGAACCAATAAGTTAGAAGGGTGTTGGCCAAGATG
Found at i:1099357 original size:43 final size:43
Alignment explanation
Indices: 1099269--1099384 Score: 128
Period size: 43 Copynumber: 2.7 Consensus size: 43
1099259 TAGAAGGGTA
** * ***
1099269 TTGGCCAAGATGAAACCATACGTGCCAACAAGTTAGAAGGGTG
1 TTGGCCAAGATGAAACCATACGAACCAATAAGTTAGAAAAATG
1099312 TTGGCCAAGATGAAACCATACGAACCAATAAGTTAGAAAAATG
1 TTGGCCAAGATGAAACCATACGAACCAATAAGTTAGAAAAATG
* * *
1099355 TTGGTCGAA-AAG-AACCATACAAACCAATAA
1 TTGG-CCAAGATGAAACCATACGAACCAATAA
1099385 AGAAAAATTG
Statistics
Matches: 63, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
42 17 0.27
43 43 0.68
44 3 0.05
ACGTcount: A:0.43, C:0.18, G:0.21, T:0.18
Consensus pattern (43 bp):
TTGGCCAAGATGAAACCATACGAACCAATAAGTTAGAAAAATG
Found at i:1100617 original size:20 final size:20
Alignment explanation
Indices: 1100592--1100643 Score: 79
Period size: 19 Copynumber: 2.6 Consensus size: 20
1100582 TACAAGCCAA
**
1100592 TGTATCGATACAATTTTTTG
1 TGTATCGATACAATACTTTG
1100612 TGTATCGATAC-ATACTTTG
1 TGTATCGATACAATACTTTG
1100631 TGTATCGATACAA
1 TGTATCGATACAA
1100644 GTTTGGCTAC
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
19 17 0.59
20 12 0.41
ACGTcount: A:0.29, C:0.13, G:0.15, T:0.42
Consensus pattern (20 bp):
TGTATCGATACAATACTTTG
Found at i:1101329 original size:47 final size:47
Alignment explanation
Indices: 1101277--1101372 Score: 183
Period size: 47 Copynumber: 2.0 Consensus size: 47
1101267 AATAATTTTA
1101277 ACAAGTTTGTACATTCTCCCCCTTAATAAGGTAATTTTAGCAAATTT
1 ACAAGTTTGTACATTCTCCCCCTTAATAAGGTAATTTTAGCAAATTT
*
1101324 ACAAGTTTGTACATTTTCCCCCTTAATAAGGTAATTTTAGCAAATTT
1 ACAAGTTTGTACATTCTCCCCCTTAATAAGGTAATTTTAGCAAATTT
1101371 AC
1 AC
1101373 GCATTCTCCC
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 48 1.00
ACGTcount: A:0.32, C:0.19, G:0.10, T:0.39
Consensus pattern (47 bp):
ACAAGTTTGTACATTCTCCCCCTTAATAAGGTAATTTTAGCAAATTT
Found at i:1102774 original size:21 final size:20
Alignment explanation
Indices: 1102745--1102787 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
1102735 GACTAGTGTG
1102745 GGGACTGCCCGGTTGCGACCT
1 GGGACTG-CCGGTTGCGACCT
*
1102766 GGGAGTGCCGGTTGCGACCT
1 GGGACTGCCGGTTGCGACCT
1102786 GG
1 GG
1102788 TGGTGCTGCC
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
20 15 0.71
21 6 0.29
ACGTcount: A:0.09, C:0.28, G:0.44, T:0.19
Consensus pattern (20 bp):
GGGACTGCCGGTTGCGACCT
Found at i:1103247 original size:13 final size:13
Alignment explanation
Indices: 1103229--1103266 Score: 67
Period size: 13 Copynumber: 2.9 Consensus size: 13
1103219 ATAATCCCCC
1103229 TGTATCGATACAG
1 TGTATCGATACAG
*
1103242 TGTATCGATACAT
1 TGTATCGATACAG
1103255 TGTATCGATACA
1 TGTATCGATACA
1103267 AAGAAAAATG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.34
Consensus pattern (13 bp):
TGTATCGATACAG
Found at i:1105367 original size:15 final size:15
Alignment explanation
Indices: 1105347--1105377 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
1105337 ATTTCGTTTG
*
1105347 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
1105362 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
1105377 G
1 G
1105378 GACATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Found at i:1109456 original size:13 final size:13
Alignment explanation
Indices: 1109438--1109463 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1109428 CAATTTTTTG
1109438 TGTATCGATACAT
1 TGTATCGATACAT
1109451 TGTATCGATACAT
1 TGTATCGATACAT
1109464 ACTTTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1115265 original size:79 final size:78
Alignment explanation
Indices: 1114936--1115347 Score: 411
Period size: 80 Copynumber: 5.2 Consensus size: 78
1114926 TGAAAATCAA
* *
1114936 GGTTGAAGTATCCCCTC-AGAGATGGTGGGGTTGGAGTATCCAC-AGAGATGTAAAATTCAATGT
1 GGTTGGAGTATCCCCTCGA-AAATGGTGGGGTTGGAGTATCC-CTA-AGATG-AAAATTCAATGT
1114999 TCTT-GAAGTAAAAATAG
62 T-TTAGAAGTAAAAATAG
* * * * * * * * *
1115016 GGTTCGAGTATCCCCTTGGAAATGATAGGGTTAGAGTATCCTTTGAGATGAAAATTCGAGTGTTT
1 GGTTGGAGTATCCCCTCGAAAATGGTGGGGTTGGAGTATCC-CTAAGATGAAAATTC-AATGTTT
*
1115081 TAAAAGTAAAAAT-G
64 TAGAAGTAAAAATAG
* * *
1115095 AGGTTGGAGTACCCCCTCAAAAATGGTGGGGTTGGAGTAT-CTTAGAGATGAAGAAATTCAATGT
1 -GGTTGGAGTATCCCCTCGAAAATGGTGGGGTTGGAGTATCCCTA-AGATG-A-AAATTCAATGT
* *
1115159 TTTAAAAGTAAAAATGG
62 TTTAGAAGTAAAAATAG
* *
1115176 GGTTGGAGTATCCCCTCGAAAATGGTGGGGTTGGGGTATCCCTAAGATGAGAAATTCAATATTTT
1 GGTTGGAGTATCCCCTCGAAAATGGTGGGGTTGGAGTATCCCTAAGATGA-AAATTCAATGTTTT
*
1115241 AGAACTAAAAATAG
65 AGAAGTAAAAATAG
* ** * * * *
1115255 GGTTGGAGTATCCCCTCGAAAATGATGGAATTAGAGTATCCCCAAGATGAAAAATTTAATATTTT
1 GGTTGGAGTATCCCCTCGAAAATGGTGGGGTTGGAGTATCCCTAAGATG-AAAATTCAATGTTTT
* *
1115320 GGAAGTAAAAATGG
65 AGAAGTAAAAATAG
1115334 GGTTGGAGTATCCC
1 GGTTGGAGTATCCC
1115348 ATCTTTATGT
Statistics
Matches: 280, Mismatches: 41, Indels: 23
0.81 0.12 0.07
Matches are distributed among these distances:
78 2 0.01
79 123 0.44
80 145 0.52
81 10 0.04
ACGTcount: A:0.34, C:0.12, G:0.26, T:0.28
Consensus pattern (78 bp):
GGTTGGAGTATCCCCTCGAAAATGGTGGGGTTGGAGTATCCCTAAGATGAAAATTCAATGTTTTA
GAAGTAAAAATAG
Found at i:1115292 original size:159 final size:159
Alignment explanation
Indices: 1114969--1115347 Score: 426
Period size: 159 Copynumber: 2.4 Consensus size: 159
1114959 GGTGGGGTTG
* * * * *
1114969 GAGTATCCACAGAGATGTAAAATTCAATGTTCTTGAAGTAAAAATAGGGTTCGAGTATCCCCTTG
1 GAGTATCCCCAGAGATGAAAAATTCAATGTT-TTGAAGTAAAAATGGGGTTGGAGTATCCCCTCG
* * * * * *
1115034 GAAATGATAGGGTTAGAGTATCCTTTGAGATGAAAATTCGAGTGTTTTAAAAGTAAAAATGAGGT
65 AAAATGATAGGGTTAGAGTATCCTCTAAGATGAAAATTCGAATATTTTAAAACTAAAAATGAGGT
* ** *
1115099 TGGAGTACCCCCTCAAAAATGGTGGGGTTG
130 TGGAGTACCCCCTCAAAAATGATGGAATTA
** *
1115129 GAGTAT-CTTAGAGATGAAGAAATTCAATGTTTTAAAAGTAAAAATGGGGTTGGAGTATCCCCTC
1 GAGTATCCCCAGAGATGAA-AAATTCAATGTTTT-GAAGTAAAAATGGGGTTGGAGTATCCCCTC
* * * * *
1115193 GAAAATGGTGGGGTTGGGGTATCC-CTAAGATGAGAAATTC-AATATTTTAGAACTAAAAAT-AG
64 GAAAATGATAGGGTTAGAGTATCCTCTAAGATGA-AAATTCGAATATTTTAAAACTAAAAATGA-
* *
1115255 GGTTGGAGTATCCCCTCGAAAATGATGGAATTA
127 GGTTGGAGTACCCCCTCAAAAATGATGGAATTA
* *
1115288 GAGTATCCCCA-AGATGAAAAATTTAATATTTTGGAAGTAAAAATGGGGTTGGAGTATCCC
1 GAGTATCCCCAGAGATGAAAAATTCAATGTTTT-GAAGTAAAAATGGGGTTGGAGTATCCC
1115348 ATCTTTATGT
Statistics
Matches: 184, Mismatches: 30, Indels: 12
0.81 0.13 0.05
Matches are distributed among these distances:
158 39 0.21
159 74 0.40
160 71 0.39
ACGTcount: A:0.35, C:0.11, G:0.25, T:0.28
Consensus pattern (159 bp):
GAGTATCCCCAGAGATGAAAAATTCAATGTTTTGAAGTAAAAATGGGGTTGGAGTATCCCCTCGA
AAATGATAGGGTTAGAGTATCCTCTAAGATGAAAATTCGAATATTTTAAAACTAAAAATGAGGTT
GGAGTACCCCCTCAAAAATGATGGAATTA
Found at i:1117935 original size:6 final size:7
Alignment explanation
Indices: 1117919--1117943 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
1117909 AGCTTCATTC
1117919 TTTTCAT
1 TTTTCAT
1117926 TTTTCAT
1 TTTTCAT
1117933 TTTTCAT
1 TTTTCAT
1117940 TTTT
1 TTTT
1117944 TTCTTTTTTC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.12, C:0.12, G:0.00, T:0.76
Consensus pattern (7 bp):
TTTTCAT
Found at i:1117940 original size:23 final size:23
Alignment explanation
Indices: 1117912--1117959 Score: 69
Period size: 23 Copynumber: 2.1 Consensus size: 23
1117902 ACCTTAGAGC
1117912 TTCATTCTTTTCATTTTTCATTT
1 TTCATTCTTTTCATTTTTCATTT
* * *
1117935 TTCATTTTTTTCTTTTTTCCTTT
1 TTCATTCTTTTCATTTTTCATTT
1117958 TT
1 TT
1117960 TTTATTACTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.08, C:0.17, G:0.00, T:0.75
Consensus pattern (23 bp):
TTCATTCTTTTCATTTTTCATTT
Found at i:1117944 original size:16 final size:16
Alignment explanation
Indices: 1117925--1117961 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
1117915 ATTCTTTTCA
1117925 TTTTTCATTTTTCATT
1 TTTTTCATTTTTCATT
* *
1117941 TTTTTCTTTTTTCCTT
1 TTTTTCATTTTTCATT
1117957 TTTTT
1 TTTTT
1117962 TATTACTTCA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.05, C:0.14, G:0.00, T:0.81
Consensus pattern (16 bp):
TTTTTCATTTTTCATT
Done.