Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold300
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 363256
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
File 1 of 3
Found at i:489 original size:32 final size:32
Alignment explanation
Indices: 440--1073 Score: 1081
Period size: 32 Copynumber: 19.8 Consensus size: 32
430 AAAATGGTGA
* * **
440 TTTGAAAAGGGTTGCCACTGACTTGCATGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
* *
472 TTTTAAATGGGTTGCCACCGACTTGTGTGGGT
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
*
504 TTTGAAATGGGTTGCCGCCGACTTGTGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
*
536 TTTGAAATGGATTGCCACCGACTTGTGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
568 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
600 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
632 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
* *
664 TTTGGAATGGGTTTCCACCGACTTGTGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
*
696 TTTGGAATGGGTTGCCACCGACTTGTGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
*
728 TTTGGAATGGGTTGCCACCGACTTGTGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
*
760 TTTGGAATGGGTTGCCACCGACTTGTGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
*
792 TTTGGAATGGGTTGCCACCGACTTGTGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
824 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
*
856 TTTGGAATGGGTTGCCACCGACTTGTGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
*
888 TTTGGAATGGGTTGCCACCGACTTGTGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
920 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
*
952 TTTGGAATGGGTTGCCACCGACTTGTGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
984 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
*
1016 TTTGAAATGGGTTGCCACTGACTTGTGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
* *
1048 TTTGAAATGGG-TGCCACGGAGTTGTG
1 TTTGAAATGGGTTGCCACCGACTTGTG
1074 GATTTAAAAG
Statistics
Matches: 579, Mismatches: 23, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
31 13 0.02
32 566 0.98
ACGTcount: A:0.15, C:0.18, G:0.35, T:0.32
Consensus pattern (32 bp):
TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
Found at i:1090 original size:27 final size:27
Alignment explanation
Indices: 1056--1574 Score: 702
Period size: 27 Copynumber: 19.0 Consensus size: 27
1046 GCTTTGAAAT
1056 GGGTGCCACGGAGTTGTGGATTTAAAA
1 GGGTGCCACGGAGTTGTGGATTTAAAA
* * *
1083 GGATGCCACGAAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGATTTAAAA
* *
1110 GGGTGCCACGGAGTTGCGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGATTTAAAA
*
1137 GGGTGCCACAGAGTTGTGG-TCTTAAAA
1 GGGTGCCACGGAGTTGTGGAT-TTAAAA
*
1164 GGGATGCCACGGAGTTGTGGACTTAAAA
1 GGG-TGCCACGGAGTTGTGGATTTAAAA
*
1192 GGGTGCCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGATTTAAAA
*
1219 GGGTGCCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGATTTAAAA
* *
1246 GAGTGCCACGGAGTTGTGGACTTAAAGA
1 GGGTGCCACGGAGTTGTGGATTTAAA-A
1274 GGGTGCCACGGAGTTGTGGACTTTAAAA
1 GGGTGCCACGGAGTTGTGGA-TTTAAAA
* * * *
1302 GAGCGCTACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGATTTAAAA
*
1329 GGGTGCCACGGAGTTGTGGACTTTGAAA
1 GGGTGCCACGGAGTTGTGGA-TTTAAAA
* *
1357 -GGTGCCACAGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGATTTAAAA
1383 GGGTGCCACGGAGTTGTGGACTTTAAAA
1 GGGTGCCACGGAGTTGTGGA-TTTAAAA
* *
1411 GAGTGCCACGGAGTTGTGGACTTT-GAA
1 GGGTGCCACGGAGTTGTGGA-TTTAAAA
*
1438 GGGTGCCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGATTTAAAA
1465 GGGTGCCACGGAGTTGTGGACTTTAAAA
1 GGGTGCCACGGAGTTGTGGA-TTTAAAA
*
1493 GAGTGCCACGGAGTTGTGGACTTTAAAA
1 GGGTGCCACGGAGTTGTGGA-TTTAAAA
*
1521 GAGTGCCACGGAGTTGTGGATTTAAAA
1 GGGTGCCACGGAGTTGTGGATTTAAAA
* * *
1548 GGGTGCCACAGAATTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGATTTAAAA
1575 AGGATGCTAC
Statistics
Matches: 443, Mismatches: 39, Indels: 20
0.88 0.08 0.04
Matches are distributed among these distances:
26 7 0.02
27 282 0.64
28 149 0.34
29 5 0.01
ACGTcount: A:0.27, C:0.14, G:0.35, T:0.24
Consensus pattern (27 bp):
GGGTGCCACGGAGTTGTGGATTTAAAA
Found at i:1192 original size:82 final size:81
Alignment explanation
Indices: 1056--1603 Score: 792
Period size: 82 Copynumber: 6.7 Consensus size: 81
1046 GCTTTGAAAT
* * *
1056 GGGTGCCACGGAGTTGTGGATTTAAAAGGATGCCACGAAGTTGTGGACTTAAAAGGGTGCCACGG
1 GGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGG
*
1121 AGTTGCGGACTTAAAA
66 AGTTGTGGACTTAAAA
* *
1137 GGGTGCCACAGAGTTGTGGTCTTAAAAGGGATGCCACGGAGTTGTGGACTTAAAAGGGTGCCACG
1 GGGTGCCACGGAGTTGTGGACTTAAAAGGG-TGCCACGGAGTTGTGGACTTAAAAGGGTGCCACG
1202 GAGTTGTGGACTTAAAA
65 GAGTTGTGGACTTAAAA
*
1219 GGGTGCCACGGAGTTGTGGACTTAAAAGAGTGCCACGGAGTTGTGGACTTAAAGAGGGTGCCACG
1 GGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAA-AGGGTGCCACG
1284 GAGTTGTGGACTTTAAAA
65 GAGTTGTGGAC-TTAAAA
* * * * *
1302 GAGCGCTACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTTGAAA-GGTGCCACA
1 GGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGAC-TTAAAAGGGTGCCACG
1366 GAGTTGTGGACTTAAAA
65 GAGTTGTGGACTTAAAA
* **
1383 GGGTGCCACGGAGTTGTGGACTTTAAAAGAGTGCCACGGAGTTGTGGACTTTGAAGGGTGCCACG
1 GGGTGCCACGGAGTTGTGGAC-TTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACG
1448 GAGTTGTGGACTTAAAA
65 GAGTTGTGGACTTAAAA
* *
1465 GGGTGCCACGGAGTTGTGGACTTTAAAAGAGTGCCACGGAGTTGTGGACTTTAAAAGAGTGCCAC
1 GGGTGCCACGGAGTTGTGGAC-TTAAAAGGGTGCCACGGAGTTGTGGAC-TTAAAAGGGTGCCAC
*
1530 GGAGTTGTGGATTTAAAA
64 GGAGTTGTGGACTTAAAA
* * * * **
1548 GGGTGCCACAGAATTGTGGACTTAAAAAGGATGCTACAAAGTTGTGGACTTCAAAA
1 GGGTGCCACGGAGTTGTGGACTT-AAAAGGGTGCCACGGAGTTGTGGACTT-AAAA
1604 AGAAATGCCA
Statistics
Matches: 425, Mismatches: 33, Indels: 16
0.90 0.07 0.03
Matches are distributed among these distances:
81 77 0.18
82 221 0.52
83 123 0.29
84 4 0.01
ACGTcount: A:0.28, C:0.14, G:0.34, T:0.24
Consensus pattern (81 bp):
GGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGG
AGTTGTGGACTTAAAA
Found at i:1442 original size:219 final size:218
Alignment explanation
Indices: 1041--1603 Score: 839
Period size: 219 Copynumber: 2.6 Consensus size: 218
1031 CACTGACTTG
* * *
1041 TGTGGGCTTTGAAATGGGTGCCACGGAGTTGTGGA-TTTAAAAGGATGC-CACGAAGTTGTGGAC
1 TGTGGACTTT-AAAAGGGTGCCACGGAGTTGTGGACTTTAAAA-GA-GCGCACGGAGTTGTGGAC
* *
1104 TTAAAAGGGTGCCACGGAGTTGCGGAC-TTAAAAGGGTGCCACAGAGTTGTGGTCTTAAAAGGGA
63 TTAAAAGGGTGCCACGGAGTTGTGGACTTTAAAA-GGTGCCACAGAGTTGTGGACTTAAAAGGGA
*
1168 TGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGT
127 TGCCACGGAGTTGTGGACTTAAAAGAGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGT
1233 TGTGGACTTAAAAGAGTGCCACGGAGT
192 TGTGGACTTAAAAGAGTGCCACGGAGT
1260 TGTGGAC-TTAAAGAGGGTGCCACGGAGTTGTGGACTTTAAAAGAGCGCTACGGAGTTGTGGACT
1 TGTGGACTTTAAA-AGGGTGCCACGGAGTTGTGGACTTTAAAAGAGCGC-ACGGAGTTGTGGACT
*
1324 TAAAAGGGTGCCACGGAGTTGTGGACTTTGAAAGGTGCCACAGAGTTGTGGACTTAAAAGGG-TG
64 TAAAAGGGTGCCACGGAGTTGTGGACTTTAAAAGGTGCCACAGAGTTGTGGACTTAAAAGGGATG
**
1388 CCACGGAGTTGTGGACTTTAAAAGAGTGCCACGGAGTTGTGGACTTTGAAGGGTGCCACGGAGTT
129 CCACGGAGTTGTGGAC-TTAAAAGAGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTT
*
1453 GTGGACTTAAAAGGGTGCCACGGAGT
193 GTGGACTTAAAAGAGTGCCACGGAGT
* * *
1479 TGTGGACTTTAAAAGAGTGCCACGGAGTTGTGGACTTTAAAAGAGTGCCACGGAGTTGTGGATTT
1 TGTGGACTTTAAAAGGGTGCCACGGAGTTGTGGACTTTAAAAGAGCG-CACGGAGTTGTGGACTT
* * * * *
1544 AAAAGGGTGCCACAGAATTGTGGACTTAAAAAGGATGCTACAAAGTTGTGGACTTCAAAA
65 AAAAGGGTGCCACGGAGTTGTGGACTTTAAAAGG-TGCCACAGAGTTGTGGACTT-AAAA
1604 AGAAATGCCA
Statistics
Matches: 315, Mismatches: 19, Indels: 18
0.89 0.05 0.05
Matches are distributed among these distances:
217 5 0.02
218 43 0.14
219 234 0.74
220 29 0.09
221 4 0.01
ACGTcount: A:0.28, C:0.14, G:0.34, T:0.24
Consensus pattern (218 bp):
TGTGGACTTTAAAAGGGTGCCACGGAGTTGTGGACTTTAAAAGAGCGCACGGAGTTGTGGACTTA
AAAGGGTGCCACGGAGTTGTGGACTTTAAAAGGTGCCACAGAGTTGTGGACTTAAAAGGGATGCC
ACGGAGTTGTGGACTTAAAAGAGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTG
GACTTAAAAGAGTGCCACGGAGT
Found at i:10105 original size:20 final size:20
Alignment explanation
Indices: 10058--10132 Score: 80
Period size: 20 Copynumber: 3.8 Consensus size: 20
10048 AAAAAGACAT
*
10058 AATGTATCGATACATT-GTA
1 AATGTATCGATACATTCATA
*
10077 GAATATATCGATACATTCATA
1 -AATGTATCGATACATTCATA
* * * *
10098 CATGTATCGATATATTGAAA
1 AATGTATCGATACATTCATA
10118 AATGTATCGATACAT
1 AATGTATCGATACAT
10133 CAGGGTATGA
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
20 43 0.96
21 2 0.04
ACGTcount: A:0.40, C:0.12, G:0.13, T:0.35
Consensus pattern (20 bp):
AATGTATCGATACATTCATA
Found at i:10126 original size:40 final size:39
Alignment explanation
Indices: 10055--10132 Score: 111
Period size: 40 Copynumber: 2.0 Consensus size: 39
10045 GGTAAAAAGA
* *
10055 CATAATGTATCGATACATTGTAGAATATATCGATACATT
1 CATAATGTATCGATACATTGAAAAATATATCGATACATT
* *
10094 CATACATGTATCGATATATTGAAAAATGTATCGATACAT
1 CATA-ATGTATCGATACATTGAAAAATATATCGATACAT
10133 CAGGGTATGA
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
39 4 0.12
40 30 0.88
ACGTcount: A:0.40, C:0.13, G:0.13, T:0.35
Consensus pattern (39 bp):
CATAATGTATCGATACATTGAAAAATATATCGATACATT
Found at i:10757 original size:27 final size:27
Alignment explanation
Indices: 10680--11554 Score: 1365
Period size: 27 Copynumber: 32.0 Consensus size: 27
10670 TGGCATTTCT
* *
10680 TTTTGAAGTCCACAACTCCGTGGCATCT
1 TTTT-AAGTCCACAACTCCGTGGCACCC
*
10708 TTTTAAAGTCCACAACTCTGTGGCACCC
1 TTTT-AAGTCCACAACTCCGTGGCACCC
* *
10736 TTTTAAATCCACAACTCCGTGGCACTC
1 TTTTAAGTCCACAACTCCGTGGCACCC
*
10763 TTTTAAAGTCCACAACTCCGTGGCACTC
1 TTTT-AAGTCCACAACTCCGTGGCACCC
10791 TTTTAAAGTCCACAACTCCGTGGCACCC
1 TTTT-AAGTCCACAACTCCGTGGCACCC
10819 TTTTAAGTCCACAACTCCGTGGCACCC
1 TTTTAAGTCCACAACTCCGTGGCACCC
** *
10846 TTCAAAGTCCACAACTCCGTGGCACTC
1 TTTTAAGTCCACAACTCCGTGGCACCC
10873 TTTTAAAGTCCACAACTCCGTGGCACCC
1 TTTT-AAGTCCACAACTCCGTGGCACCC
*
10901 TTTTAAGTCCACAACTCTGTGGCA-CC
1 TTTTAAGTCCACAACTCCGTGGCACCC
*
10927 TTTCAAAGTCCACAACTCCGTGGCACCC
1 TTT-TAAGTCCACAACTCCGTGGCACCC
* * *
10955 TTTTAAGTCCACAACTCCGTAGCGCTC
1 TTTTAAGTCCACAACTCCGTGGCACCC
10982 TTTTAAAGTCCACAACTCCGTGGCACCC
1 TTTT-AAGTCCACAACTCCGTGGCACCC
11010 TCTTTAAGTCCACAACTCCGTGGCACCC
1 T-TTTAAGTCCACAACTCCGTGGCACCC
11038 TCTTTAAGTCCACAACTCCGTGGCACCC
1 T-TTTAAGTCCACAACTCCGTGGCACCC
*
11066 TTTTAAGTCCACAACTCTGTGGCACCC
1 TTTTAAGTCCACAACTCCGTGGCACCC
11093 TTTTAAGTCCACAACTCCGTGGCATCCC
1 TTTTAAGTCCACAACTCCGTGGCA-CCC
11121 TTTTAAGTCCACAACTCCGTGGCACCC
1 TTTTAAGTCCACAACTCCGTGGCACCC
11148 TTTTAAGTCCACAACTCCGTGGCACCC
1 TTTTAAGTCCACAACTCCGTGGCACCC
*
11175 TTTTAAGTCCACAACTCTGTGGCACCC
1 TTTTAAGTCCACAACTCCGTGGCACCC
*
11202 TTTTAAGTCCACAACTCCGTGGCATCTC
1 TTTTAAGTCCACAACTCCGTGGCA-CCC
*
11230 TTTTAAGTCCACAACTCTGTGGCACCC
1 TTTTAAGTCCACAACTCCGTGGCACCC
**
11257 TTTTAAGTCCACAACTTTGTGGCACCC
1 TTTTAAGTCCACAACTCCGTGGCACCC
* *
11284 TTTTAAGTCCACAACTCCGTAGCACCT
1 TTTTAAGTCCACAACTCCGTGGCACCC
*
11311 TTTTAAGTCCACAACTCCGTGGCACTC
1 TTTTAAGTCCACAACTCCGTGGCACCC
11338 TTTTAAGTCCACAACTCCGTGGCACCC
1 TTTTAAGTCCACAACTCCGTGGCACCC
11365 TTTTAAGTCCACAACTCCGTGGCACCC
1 TTTTAAGTCCACAACTCCGTGGCACCC
11392 TTTTAAGTCCACAACTCCGTGGCACCC
1 TTTTAAGTCCACAACTCCGTGGCACCC
11419 TTTTAAGTCCACAACTCCGTGGCATCCC
1 TTTTAAGTCCACAACTCCGTGGCA-CCC
* * *
11447 TTTTAAGACCACAATTCTGTGGCACCC
1 TTTTAAGTCCACAACTCCGTGGCACCC
11474 TTTTAAGTCCACAACTCCGTGGCACCC
1 TTTTAAGTCCACAACTCCGTGGCACCC
*
11501 TTTTAAGTCCACAACTCCGTGGCATCC
1 TTTTAAGTCCACAACTCCGTGGCACCC
* * *
11528 TTTTAAATCCATAACTCTGTGGCACCC
1 TTTTAAGTCCACAACTCCGTGGCACCC
11555 ATTTCAAAGC
Statistics
Matches: 786, Mismatches: 52, Indels: 19
0.92 0.06 0.02
Matches are distributed among these distances:
26 5 0.01
27 517 0.66
28 261 0.33
29 3 0.00
ACGTcount: A:0.23, C:0.35, G:0.14, T:0.28
Consensus pattern (27 bp):
TTTTAAGTCCACAACTCCGTGGCACCC
Found at i:10891 original size:82 final size:81
Alignment explanation
Indices: 10680--11554 Score: 1365
Period size: 82 Copynumber: 10.7 Consensus size: 81
10670 TGGCATTTCT
* * * *
10680 TTTTGAAGTCCACAACTCCGTGGCATCTTTTTAAAGTCCACAACTCTGTGGCACCCTTTTAAATC
1 TTTT-AAGTCCACAACTCCGTGGCACCCTTTT-AAGTCCACAACTCCGTGGCACCCTTTTAAGTC
*
10745 CACAACTCCGTGGCACTC
64 CACAACTCCGTGGCACCC
*
10763 TTTTAAAGTCCACAACTCCGTGGCACTCTTTTAAAGTCCACAACTCCGTGGCACCCTTTTAAGTC
1 TTTT-AAGTCCACAACTCCGTGGCACCCTTTT-AAGTCCACAACTCCGTGGCACCCTTTTAAGTC
10828 CACAACTCCGTGGCACCC
64 CACAACTCCGTGGCACCC
** *
10846 TTCAAAGTCCACAACTCCGTGGCACTCTTTTAAAGTCCACAACTCCGTGGCACCCTTTTAAGTCC
1 TTTTAAGTCCACAACTCCGTGGCACCCTTTT-AAGTCCACAACTCCGTGGCACCCTTTTAAGTCC
*
10911 ACAACTCTGTGGCA-CC
65 ACAACTCCGTGGCACCC
* * * *
10927 TTTCAAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTAGCGCTCTTTTAAAGTC
1 TTT-TAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTT-AAGTC
10992 CACAACTCCGTGGCACCC
64 CACAACTCCGTGGCACCC
11010 TCTTTAAGTCCACAACTCCGTGGCACCCTCTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTC
1 T-TTTAAGTCCACAACTCCGTGGCACCCT-TTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTC
*
11075 CACAACTCTGTGGCACCC
64 CACAACTCCGTGGCACCC
11093 TTTTAAGTCCACAACTCCGTGGCATCCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCC
1 TTTTAAGTCCACAACTCCGTGGCA-CCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCC
11158 ACAACTCCGTGGCACCC
65 ACAACTCCGTGGCACCC
* *
11175 TTTTAAGTCCACAACTCTGTGGCACCCTTTTAAGTCCACAACTCCGTGGCATCTCTTTTAAGTCC
1 TTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCA-CCCTTTTAAGTCC
*
11240 ACAACTCTGTGGCACCC
65 ACAACTCCGTGGCACCC
** * *
11257 TTTTAAGTCCACAACTTTGTGGCACCCTTTTAAGTCCACAACTCCGTAGCACCTTTTTAAGTCCA
1 TTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCA
*
11322 CAACTCCGTGGCACTC
66 CAACTCCGTGGCACCC
11338 TTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCA
1 TTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCA
11403 CAACTCCGTGGCACCC
66 CAACTCCGTGGCACCC
* * *
11419 TTTTAAGTCCACAACTCCGTGGCATCCCTTTTAAGACCACAATTCTGTGGCACCCTTTTAAGTCC
1 TTTTAAGTCCACAACTCCGTGGCA-CCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCC
11484 ACAACTCCGTGGCACCC
65 ACAACTCCGTGGCACCC
* * * *
11501 TTTTAAGTCCACAACTCCGTGGCATCCTTTTAAATCCATAACTCTGTGGCACCC
1 TTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCC
11555 ATTTCAAAGC
Statistics
Matches: 740, Mismatches: 44, Indels: 18
0.92 0.05 0.02
Matches are distributed among these distances:
81 206 0.28
82 373 0.50
83 132 0.18
84 29 0.04
ACGTcount: A:0.23, C:0.35, G:0.14, T:0.28
Consensus pattern (81 bp):
TTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCA
CAACTCCGTGGCACCC
Found at i:10965 original size:109 final size:109
Alignment explanation
Indices: 10680--11554 Score: 1359
Period size: 109 Copynumber: 8.0 Consensus size: 109
10670 TGGCATTTCT
* * * *
10680 TTTTGAAGTCCACAACTCCGTGGCATCTTTTTAAAGTCCACAACTCTGTGGCACCCTTTTAAATC
1 TTTT-AAGTCCACAACTCCGTGGCACCCTTTT-AAGTCCACAACTCCGTGGCACCCTTTTAAGTC
*
10745 CACAACTCCGTGGCACTCTTTTAAAGTCCACAACTCCGTGGCACTC
64 CACAACTCCGTGGCACTCTTTTAAAGTCCACAACTCCGTGGCACCC
**
10791 TTTTAAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTCAAAGTCC
1 TTTT-AAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCC
10856 ACAACTCCGTGGCACTCTTTTAAAGTCCACAACTCCGTGGCACCC
65 ACAACTCCGTGGCACTCTTTTAAAGTCCACAACTCCGTGGCACCC
* *
10901 TTTTAAGTCCACAACTCTGTGGCA-CCTTTCAAAGTCCACAACTCCGTGGCACCCTTTTAAGTCC
1 TTTTAAGTCCACAACTCCGTGGCACCCTTT-TAAGTCCACAACTCCGTGGCACCCTTTTAAGTCC
* *
10965 ACAACTCCGTAGCGCTCTTTTAAAGTCCACAACTCCGTGGCACCC
65 ACAACTCCGTGGCACTCTTTTAAAGTCCACAACTCCGTGGCACCC
11010 TCTTTAAGTCCACAACTCCGTGGCACCCTCTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTC
1 T-TTTAAGTCCACAACTCCGTGGCACCCT-TTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTC
* *
11075 CACAACTCTGTGGCACCCTTTT-AAGTCCACAACTCCGTGGCATCCC
64 CACAACTCCGTGGCACTCTTTTAAAGTCCACAACTCCGTGGCA-CCC
11121 TTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCA
1 TTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCA
* * *
11186 CAACTCTGTGGCACCCTTTT-AAGTCCACAACTCCGTGGCATCTC
66 CAACTCCGTGGCACTCTTTTAAAGTCCACAACTCCGTGGCA-CCC
* **
11230 TTTTAAGTCCACAACTCTGTGGCACCCTTTTAAGTCCACAACTTTGTGGCACCCTTTTAAGTCCA
1 TTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCA
* * *
11295 CAACTCCGTAGCAC-CTTTTTAAGTCCACAACTCCGTGGCACTC
66 CAACTCCGTGGCACTCTTTTAAAGTCCACAACTCCGTGGCACCC
11338 TTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCA
1 TTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCA
*
11403 CAACTCCGTGGCACCCTTTT-AAGTCCACAACTCCGTGGCATCCC
66 CAACTCCGTGGCACTCTTTTAAAGTCCACAACTCCGTGGCA-CCC
* * *
11447 TTTTAAGACCACAATTCTGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCA
1 TTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCA
* *
11512 CAACTCCGTGGCA-TCCTTTTAAA-TCCATAACTCTGTGGCACCC
66 CAACTCCGTGGCACT-CTTTTAAAGTCCACAACTCCGTGGCACCC
11555 ATTTCAAAGC
Statistics
Matches: 717, Mismatches: 37, Indels: 23
0.92 0.05 0.03
Matches are distributed among these distances:
108 111 0.15
109 370 0.52
110 148 0.21
111 86 0.12
112 2 0.00
ACGTcount: A:0.23, C:0.35, G:0.14, T:0.28
Consensus pattern (109 bp):
TTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCA
CAACTCCGTGGCACTCTTTTAAAGTCCACAACTCCGTGGCACCC
Found at i:11592 original size:32 final size:32
Alignment explanation
Indices: 11546--12266 Score: 1255
Period size: 32 Copynumber: 22.6 Consensus size: 32
11536 CCATAACTCT
*
11546 GTGGC-ACCCATTTCAAAGCCCACACAAGTCA
1 GTGGCAACCCATTTCAAAGCCCACACAAGTCG
*
11577 GTGGCAACCAATTTCAAAGCCCACACAAGTCG
1 GTGGCAACCCATTTCAAAGCCCACACAAGTCG
*
11609 GTGGCAACCCATTCCAAAGCCCACACAAGTCG
1 GTGGCAACCCATTTCAAAGCCCACACAAGTCG
11641 GTGGCAACCCATTTCAAAGCCCACACAAGTCG
1 GTGGCAACCCATTTCAAAGCCCACACAAGTCG
11673 GTGGCAACCCATTTCAAAGCCCACACAAGTCG
1 GTGGCAACCCATTTCAAAGCCCACACAAGTCG
*
11705 GTGGCAACCCATTCCAAAGCCCACACAAGTCG
1 GTGGCAACCCATTTCAAAGCCCACACAAGTCG
*
11737 GTGGCAACCCATTCCAAAGCCCACACAAGTCG
1 GTGGCAACCCATTTCAAAGCCCACACAAGTCG
*
11769 GTGGCAACCCATTCCAAAGCCCACACAAGTCG
1 GTGGCAACCCATTTCAAAGCCCACACAAGTCG
*
11801 GTGGCAACCCATTCCAAAGCCCACACAAGTCG
1 GTGGCAACCCATTTCAAAGCCCACACAAGTCG
11833 GTGGCAACCCATTTCAAAGCCCACACAAGTCG
1 GTGGCAACCCATTTCAAAGCCCACACAAGTCG
11865 GTGGCAACCCATTTCAAAGCCCACACAAGTCG
1 GTGGCAACCCATTTCAAAGCCCACACAAGTCG
*
11897 GTGGCAACCCATTCCAAAGCCCACACAAGTCG
1 GTGGCAACCCATTTCAAAGCCCACACAAGTCG
*
11929 GTGGCAACCCATTCCAAAGCCCACACAAGTCG
1 GTGGCAACCCATTTCAAAGCCCACACAAGTCG
*
11961 GTGGCAACCCATTCCAAAGCCCACACAAGTCG
1 GTGGCAACCCATTTCAAAGCCCACACAAGTCG
*
11993 GTGGCAACCCATTCCAAAGCCCACACAAGTCG
1 GTGGCAACCCATTTCAAAGCCCACACAAGTCG
12025 GTGGCAACCCATTTCAAAGCCCACACAAGTCG
1 GTGGCAACCCATTTCAAAGCCCACACAAGTCG
12057 GTGGCAACCCATTTCAAAGCCCACACAAGTCG
1 GTGGCAACCCATTTCAAAGCCCACACAAGTCG
12089 GTGGCAACCCATTTCAAAGCCCACACAAGTCG
1 GTGGCAACCCATTTCAAAGCCCACACAAGTCG
*
12121 GTGGCAACCCATTTCAAAACCCACACAAGTCG
1 GTGGCAACCCATTTCAAAGCCCACACAAGTCG
*
12153 GTGGCAACCCATTCCAAAGCCCACACAAGTCG
1 GTGGCAACCCATTTCAAAGCCCACACAAGTCG
*
12185 GTGGCAACTCATTTCAAAGCCCACACAAGTCG
1 GTGGCAACCCATTTCAAAGCCCACACAAGTCG
* *** *
12217 GTGGCAACCCATTTAAAAGCCCATGTAAGTCA
1 GTGGCAACCCATTTCAAAGCCCACACAAGTCG
*
12249 GTGGCAACCCTTTTCAAA
1 GTGGCAACCCATTTCAAA
12267 TCACCATTTT
Statistics
Matches: 667, Mismatches: 22, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
31 5 0.01
32 662 0.99
ACGTcount: A:0.32, C:0.35, G:0.18, T:0.15
Consensus pattern (32 bp):
GTGGCAACCCATTTCAAAGCCCACACAAGTCG
Found at i:12824 original size:20 final size:20
Alignment explanation
Indices: 12793--12867 Score: 78
Period size: 20 Copynumber: 3.8 Consensus size: 20
12783 TCATACCCTG
*
12793 ATGTATCAATACATTTTTCA
1 ATGTATCGATACATTTTTCA
* * * *
12813 ATATATCGATACATGTATGA
1 ATGTATCGATACATTTTTCA
* * *
12833 ATGTATCGATATATTCTACA
1 ATGTATCGATACATTTTTCA
12853 ATGTATCGATACATT
1 ATGTATCGATACATT
12868 ATGTCTTTTT
Statistics
Matches: 42, Mismatches: 13, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.36, C:0.13, G:0.11, T:0.40
Consensus pattern (20 bp):
ATGTATCGATACATTTTTCA
Found at i:12860 original size:40 final size:39
Alignment explanation
Indices: 12793--12870 Score: 102
Period size: 40 Copynumber: 2.0 Consensus size: 39
12783 TCATACCCTG
* *
12793 ATGTATCAATACATTTTTCAATATATCGATACATGTATGA
1 ATGTATCAATACATTCTACAATATATCGATACAT-TATGA
* * *
12833 ATGTATCGATATATTCTACAATGTATCGATACATTATG
1 ATGTATCAATACATTCTACAATATATCGATACATTATG
12871 TCTTTTTACC
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
39 4 0.12
40 29 0.88
ACGTcount: A:0.36, C:0.13, G:0.12, T:0.40
Consensus pattern (39 bp):
ATGTATCAATACATTCTACAATATATCGATACATTATGA
Found at i:13808 original size:23 final size:23
Alignment explanation
Indices: 13778--13832 Score: 96
Period size: 21 Copynumber: 2.5 Consensus size: 23
13768 AGCCTTTGAC
13778 CATGCATTTTTTTTATTATGTTT
1 CATGCATTTTTTTTATTATGTTT
13801 CATGCA--TTTTTTATTATGTTT
1 CATGCATTTTTTTTATTATGTTT
13822 CATGCATTTTT
1 CATGCATTTTT
13833 AACATGTCCA
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
21 21 0.70
23 9 0.30
ACGTcount: A:0.18, C:0.11, G:0.09, T:0.62
Consensus pattern (23 bp):
CATGCATTTTTTTTATTATGTTT
Found at i:13839 original size:20 final size:21
Alignment explanation
Indices: 13786--13839 Score: 65
Period size: 21 Copynumber: 2.6 Consensus size: 21
13776 ACCATGCATT
**
13786 TTTTTTATTATGTTTCATGCA
1 TTTTTTAACATGTTTCATGCA
**
13807 TTTTTTATTATGTTTCATGCA
1 TTTTTTAACATGTTTCATGCA
13828 -TTTTTAACATGT
1 TTTTTTAACATGT
13840 CCAGCATCTC
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
20 10 0.32
21 21 0.68
ACGTcount: A:0.20, C:0.09, G:0.09, T:0.61
Consensus pattern (21 bp):
TTTTTTAACATGTTTCATGCA
Found at i:17284 original size:18 final size:17
Alignment explanation
Indices: 17261--17327 Score: 61
Period size: 18 Copynumber: 4.0 Consensus size: 17
17251 TTTGAAATTA
17261 ATATTATTTAAATATATT
1 ATATT-TTTAAATATATT
*
17279 ATATTATT--AT-T-TT
1 ATATTTTTAAATATATT
17292 ATATTTATTAAATATATT
1 ATATTT-TTAAATATATT
*
17310 ATATTTATAATATATATT
1 ATATTTTTAA-ATATATT
17328 TTTATATTAT
Statistics
Matches: 40, Mismatches: 3, Indels: 12
0.73 0.05 0.22
Matches are distributed among these distances:
13 7 0.17
14 3 0.08
15 2 0.05
16 2 0.05
17 6 0.15
18 20 0.50
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (17 bp):
ATATTTTTAAATATATT
Found at i:17293 original size:13 final size:12
Alignment explanation
Indices: 17261--17337 Score: 56
Period size: 11 Copynumber: 6.6 Consensus size: 12
17251 TTTGAAATTA
*
17261 ATATTA-TTTAA
1 ATATTATTTTAT
*
17272 ATA-TATTATAT
1 ATATTATTTTAT
17283 -TATTATTTTAT
1 ATATTATTTTAT
**
17294 AT-TTATTAAAT
1 ATATTATTTTAT
17305 ATATTATATTTAT
1 ATATTAT-TTTAT
17318 AATATATATTTT-T
1 -ATAT-TATTTTAT
17331 ATATTAT
1 ATATTAT
17338 GTTTGAAATT
Statistics
Matches: 52, Mismatches: 7, Indels: 14
0.71 0.10 0.19
Matches are distributed among these distances:
10 4 0.08
11 25 0.48
12 9 0.17
13 4 0.08
14 7 0.13
15 3 0.06
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (12 bp):
ATATTATTTTAT
Found at i:17326 original size:31 final size:31
Alignment explanation
Indices: 17268--17328 Score: 88
Period size: 31 Copynumber: 2.0 Consensus size: 31
17258 TTAATATTAT
* *
17268 TTAAATATATTATATTATTATTTTATATTTA
1 TTAAATATATTATATTATTAATATATATTTA
17299 TTAAATATATTATATT-TATAATATATATTT
1 TTAAATATATTATATTAT-TAATATATATTT
17329 TTATATTATG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 1 0.04
31 26 0.96
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (31 bp):
TTAAATATATTATATTATTAATATATATTTA
Found at i:19805 original size:23 final size:22
Alignment explanation
Indices: 19757--19805 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 22
19747 AAAATAATAA
* *
19757 TTAAAAATAATATTTTTATTTT
1 TTAAAAATAATATTATTATTTC
19779 TTAAAAATAATTATTAATTA-TTC
1 TTAAAAATAA-TATT-ATTATTTC
19802 TTAA
1 TTAA
19806 TTTTTTAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
22 10 0.43
23 10 0.43
24 3 0.13
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (22 bp):
TTAAAAATAATATTATTATTTC
Found at i:23091 original size:21 final size:22
Alignment explanation
Indices: 23067--23115 Score: 73
Period size: 22 Copynumber: 2.3 Consensus size: 22
23057 AAGATAACTA
**
23067 TTAAAAATAATT-TTTTATTTT
1 TTAAAAATAATTATTCAATTTT
23088 TTAAAAATAATTATTCAATTTT
1 TTAAAAATAATTATTCAATTTT
23110 TTAAAA
1 TTAAAA
23116 TTTTGTAGTA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
21 12 0.48
22 13 0.52
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (22 bp):
TTAAAAATAATTATTCAATTTT
Found at i:23109 original size:20 final size:21
Alignment explanation
Indices: 23067--23115 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 21
23057 AAGATAACTA
* * *
23067 TTAAAAATAATTTTTTATTTT
1 TTAAAAATAATTATTCATATT
*
23088 TTAAAAATAATTATTCAATTTT
1 TTAAAAATAATTATTC-ATATT
23110 TTAAAA
1 TTAAAA
23116 TTTTGTAGTA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
21 14 0.56
22 11 0.44
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (21 bp):
TTAAAAATAATTATTCATATT
Found at i:23980 original size:34 final size:34
Alignment explanation
Indices: 23916--24098 Score: 260
Period size: 34 Copynumber: 5.4 Consensus size: 34
23906 CAAGAAATGG
* *
23916 TGTTGATTAAAT-GGTGATTTGGTAGTTTACCAT
1 TGTTGATTAAATGGGAGATTTGGTAGCTTACCAT
* *
23949 TGTTGACTAAATGGGAAATTTGGTAGCTTACCAT
1 TGTTGATTAAATGGGAGATTTGGTAGCTTACCAT
23983 TGTTGATTAAATGGGAGATTTGGTAGCTTACCAT
1 TGTTGATTAAATGGGAGATTTGGTAGCTTACCAT
* * * *
24017 TATTGATTAAATGGGTGATTTGGTGGTTTACCAT
1 TGTTGATTAAATGGGAGATTTGGTAGCTTACCAT
* * *
24051 TGTTGACTAAATGGGAGATTTGGTAGGTTGCCAT
1 TGTTGATTAAATGGGAGATTTGGTAGCTTACCAT
24085 TGTTGATTAAATGG
1 TGTTGATTAAATGG
24099 TGGTTTTTAC
Statistics
Matches: 132, Mismatches: 17, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
33 11 0.08
34 121 0.92
ACGTcount: A:0.26, C:0.08, G:0.27, T:0.40
Consensus pattern (34 bp):
TGTTGATTAAATGGGAGATTTGGTAGCTTACCAT
Found at i:24456 original size:19 final size:19
Alignment explanation
Indices: 24400--24462 Score: 90
Period size: 19 Copynumber: 3.3 Consensus size: 19
24390 TGGTTGTCGA
**
24400 GGTACTATTCACGTATATA
1 GGTACTATTCACGTATACG
24419 GGTACTATTCACGTATACG
1 GGTACTATTCACGTATACG
*
24438 GGTACTATTCAAGTATACG
1 GGTACTATTCACGTATACG
*
24457 GTTACT
1 GGTACT
24463 GTACACGTGA
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 40 1.00
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.35
Consensus pattern (19 bp):
GGTACTATTCACGTATACG
Found at i:28594 original size:34 final size:34
Alignment explanation
Indices: 28528--28712 Score: 264
Period size: 34 Copynumber: 5.5 Consensus size: 34
28518 AAGTGGGAGA
* *
28528 ATTGTTGATTAAAT-GGTGATTTGGTAGTTTACC
1 ATTGTTGATTAAATGGGAGATTTGGTAGCTTACC
* *
28561 ATTGTTGACTAAATGGGAAATTTGGTAGCTTACC
1 ATTGTTGATTAAATGGGAGATTTGGTAGCTTACC
28595 ATTGTTGATTAAATGGGAGATTTGGTAGCTTACC
1 ATTGTTGATTAAATGGGAGATTTGGTAGCTTACC
* * * *
28629 ATTATTGATTAAATGGGTGATTTGGTGGTTTACC
1 ATTGTTGATTAAATGGGAGATTTGGTAGCTTACC
* * *
28663 ATTGTTGACTAAATGGGAGATTTGGTAGGTTGCC
1 ATTGTTGATTAAATGGGAGATTTGGTAGCTTACC
28697 ATTGTTGATTAAATGG
1 ATTGTTGATTAAATGG
28713 TGGTTTTTAC
Statistics
Matches: 134, Mismatches: 17, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
33 13 0.10
34 121 0.90
ACGTcount: A:0.26, C:0.08, G:0.26, T:0.40
Consensus pattern (34 bp):
ATTGTTGATTAAATGGGAGATTTGGTAGCTTACC
Found at i:31886 original size:2 final size:2
Alignment explanation
Indices: 31879--31903 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
31869 GGTTAGATTA
31879 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
31904 ACTACCCAGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:32041 original size:30 final size:32
Alignment explanation
Indices: 32005--32064 Score: 97
Period size: 30 Copynumber: 1.9 Consensus size: 32
31995 TATGTTCAAT
32005 AATAATTAAAA-TATATTTATA-TTAAAAATA
1 AATAATTAAAATTATATTTATATTTAAAAATA
*
32035 AATAATTAAAATTATCTTTATATTTAAAAA
1 AATAATTAAAATTATATTTATATTTAAAAA
32065 AGTATAAAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
30 11 0.41
31 9 0.33
32 7 0.26
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.42
Consensus pattern (32 bp):
AATAATTAAAATTATATTTATATTTAAAAATA
Found at i:33951 original size:16 final size:16
Alignment explanation
Indices: 33932--33984 Score: 54
Period size: 16 Copynumber: 3.3 Consensus size: 16
33922 TACGAAATAA
33932 ATAAAATAAATTTTAT
1 ATAAAATAAATTTTAT
*
33948 ATAAAATAATTTATTA-
1 ATAAAATAAATT-TTAT
* * *
33964 ATATATTAAAATTTAT
1 ATAAAATAAATTTTAT
33980 ATAAA
1 ATAAA
33985 TATGTAATAT
Statistics
Matches: 29, Mismatches: 6, Indels: 4
0.74 0.15 0.10
Matches are distributed among these distances:
15 3 0.10
16 23 0.79
17 3 0.10
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (16 bp):
ATAAAATAAATTTTAT
Found at i:34023 original size:12 final size:13
Alignment explanation
Indices: 33978--34033 Score: 60
Period size: 13 Copynumber: 4.1 Consensus size: 13
33968 ATTAAAATTT
*
33978 ATATAAATATGTA
1 ATATAAATATATA
33991 ATATTTTAAATATAGTA
1 ATA---TAAATATA-TA
34008 ATATAAA-ATATA
1 ATATAAATATATA
34020 ATATAAATATATA
1 ATATAAATATATA
34033 A
1 A
34034 ATTATCAAAT
Statistics
Matches: 37, Mismatches: 1, Indels: 10
0.77 0.02 0.21
Matches are distributed among these distances:
12 9 0.24
13 12 0.32
14 4 0.11
16 7 0.19
17 5 0.14
ACGTcount: A:0.57, C:0.00, G:0.04, T:0.39
Consensus pattern (13 bp):
ATATAAATATATA
Found at i:35619 original size:19 final size:20
Alignment explanation
Indices: 35567--35642 Score: 75
Period size: 19 Copynumber: 3.9 Consensus size: 20
35557 AATAGGTCCA
*
35567 TTTTTAAAAATA-TTAATAT
1 TTTTTAAAAAAATTTAATAT
* * *
35586 TTTCTAAGAAGATTTAAT-T
1 TTTTTAAAAAAATTTAATAT
35605 TTTTTAAAAAAATTTAATCAT
1 TTTTTAAAAAAATTTAAT-AT
* *
35626 TTTTTAGATAAATTTAA
1 TTTTTAAAAAAATTTAA
35643 ACAGATCTAT
Statistics
Matches: 46, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
19 25 0.54
20 5 0.11
21 16 0.35
ACGTcount: A:0.43, C:0.03, G:0.04, T:0.50
Consensus pattern (20 bp):
TTTTTAAAAAAATTTAATAT
Found at i:35641 original size:40 final size:38
Alignment explanation
Indices: 35567--35642 Score: 91
Period size: 40 Copynumber: 1.9 Consensus size: 38
35557 AATAGGTCCA
* *
35567 TTTTTAAAAATATTAATATTTTCTAAGAAGATTTAATT
1 TTTTTAAAAAAATTAATATTTTCTAAGAAAATTTAATT
*
35605 TTTTTAAAAAAATTTAATCATTTT-TTAGATAAATTTAA
1 TTTTTAAAAAAA-TTAAT-ATTTTCTAAGA-AAATTTAA
35643 ACAGATCTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
38 11 0.34
39 9 0.28
40 12 0.38
ACGTcount: A:0.43, C:0.03, G:0.04, T:0.50
Consensus pattern (38 bp):
TTTTTAAAAAAATTAATATTTTCTAAGAAAATTTAATT
Found at i:37099 original size:30 final size:27
Alignment explanation
Indices: 37043--37103 Score: 86
Period size: 30 Copynumber: 2.1 Consensus size: 27
37033 ATTATTTTTT
37043 ATTTAATATAAAAATTATTTTATTTAA
1 ATTTAATATAAAAATTATTTTATTTAA
*
37070 ATTTAATTATAAAAATATTTTTATATTTAA
1 ATTTAA-TATAAAAAT-TATTT-TATTTAA
37100 ATTT
1 ATTT
37104 TTTTAAATAA
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
27 6 0.20
28 9 0.30
29 4 0.13
30 11 0.37
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (27 bp):
ATTTAATATAAAAATTATTTTATTTAA
Found at i:39491 original size:14 final size:14
Alignment explanation
Indices: 39472--39501 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
39462 CCTTCTTAAT
39472 ACACACACACACGC
1 ACACACACACACGC
*
39486 ACACACACGCACGC
1 ACACACACACACGC
39500 AC
1 AC
39502 GATGCAACTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.40, C:0.50, G:0.10, T:0.00
Consensus pattern (14 bp):
ACACACACACACGC
Found at i:40902 original size:17 final size:17
Alignment explanation
Indices: 40882--40915 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
40872 TTTTATTTAA
40882 TTAA-TTATTTTTGAATT
1 TTAATTTATTTTT-AATT
40899 TTAATTTATTTTTAATT
1 TTAATTTATTTTTAATT
40916 ATATATTTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.68
Consensus pattern (17 bp):
TTAATTTATTTTTAATT
Found at i:40923 original size:18 final size:18
Alignment explanation
Indices: 40886--40924 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
40876 ATTTAATTAA
*
40886 TTATTTTTGAATTTTAAT
1 TTATTTTTGAATTATAAT
40904 TTATTTTT-AATTATATAT
1 TTATTTTTGAATTATA-AT
40922 TTA
1 TTA
40925 AAAGATTGAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 6 0.32
18 13 0.68
ACGTcount: A:0.31, C:0.00, G:0.03, T:0.67
Consensus pattern (18 bp):
TTATTTTTGAATTATAAT
Found at i:41002 original size:20 final size:19
Alignment explanation
Indices: 40977--41016 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
40967 CTCAAAAATA
40977 AAAAAAATATTTTATTAATT
1 AAAAAAATA-TTTATTAATT
*
40997 AAAAAATTATTTATTAATT
1 AAAAAAATATTTATTAATT
41016 A
1 A
41017 TACATTTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 11 0.58
20 8 0.42
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (19 bp):
AAAAAAATATTTATTAATT
Found at i:43113 original size:29 final size:28
Alignment explanation
Indices: 43056--43119 Score: 67
Period size: 29 Copynumber: 2.2 Consensus size: 28
43046 AGCATTTGAA
* *
43056 ATATTATAATTTTTTTATAAATTTTTAT
1 ATATTATAATTTTTTTATAAATATATAT
*
43084 ATATTAATAATTTATTTTAT-TATATATAT
1 ATATT-ATAATTT-TTTTATAAATATATAT
*
43113 ATTTTAT
1 ATATTAT
43120 TCATGTATTT
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
28 7 0.23
29 17 0.57
30 6 0.20
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (28 bp):
ATATTATAATTTTTTTATAAATATATAT
Found at i:48517 original size:21 final size:21
Alignment explanation
Indices: 48478--48550 Score: 58
Period size: 22 Copynumber: 3.4 Consensus size: 21
48468 GGATCTGATA
* * *
48478 TTTTCTTTTTTTATCTATTCTC
1 TTTTC-TTTTTCATATATTATC
* *
48500 TTTTCTTTTTCATTTATTTATT
1 TTTTCTTTTTCATATA-TTATC
* *
48522 TTTTCTTTTTCA-AAATTTTC
1 TTTTCTTTTTCATATATTATC
48542 TTTTCTTTT
1 TTTTCTTTT
48551 CCTTTTAATA
Statistics
Matches: 42, Mismatches: 8, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
20 12 0.29
21 10 0.24
22 20 0.48
ACGTcount: A:0.12, C:0.14, G:0.00, T:0.74
Consensus pattern (21 bp):
TTTTCTTTTTCATATATTATC
Found at i:48645 original size:28 final size:28
Alignment explanation
Indices: 48614--48674 Score: 65
Period size: 26 Copynumber: 2.2 Consensus size: 28
48604 GCAAATATAA
48614 TTAATTTATAAATATATAAAATA-TATTT
1 TTAATTTATAAATATATAAAA-ACTATTT
* * *
48642 TTAA--AATAATTCTATAAAAACTATTT
1 TTAATTTATAAATATATAAAAACTATTT
48668 TTAATTT
1 TTAATTT
48675 TTTGTTTGTT
Statistics
Matches: 26, Mismatches: 4, Indels: 6
0.72 0.11 0.17
Matches are distributed among these distances:
25 1 0.04
26 21 0.81
28 4 0.15
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.49
Consensus pattern (28 bp):
TTAATTTATAAATATATAAAAACTATTT
Found at i:48650 original size:26 final size:26
Alignment explanation
Indices: 48621--48671 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
48611 TAATTAATTT
48621 ATAAATATATAAAATA-TATTTTTAAA
1 ATAAATATATAAAA-ACTATTTTTAAA
* *
48647 ATAATTCTATAAAAACTATTTTTAA
1 ATAAATATATAAAAACTATTTTTAA
48672 TTTTTTGTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 1 0.05
26 21 0.95
ACGTcount: A:0.53, C:0.04, G:0.00, T:0.43
Consensus pattern (26 bp):
ATAAATATATAAAAACTATTTTTAAA
Found at i:48811 original size:21 final size:19
Alignment explanation
Indices: 48732--48815 Score: 73
Period size: 19 Copynumber: 4.2 Consensus size: 19
48722 AAACATAAAG
*
48732 AATAATTTATATTATAATTTAA
1 AATAATTTATA--A-AATATAA
*
48754 ATTAATTT-TATAAATATAA
1 AATAATTTATA-AAATATAA
48773 AATAATTTATAAAATATAA
1 AATAATTTATAAAATATAA
48792 AAT-ATTTATCAATGAATATAA
1 AATAATTTAT-AA--AATATAA
48813 AAT
1 AAT
48816 GTAAATATTT
Statistics
Matches: 55, Mismatches: 3, Indels: 9
0.82 0.04 0.13
Matches are distributed among these distances:
18 6 0.11
19 26 0.47
20 4 0.07
21 12 0.22
22 7 0.13
ACGTcount: A:0.55, C:0.01, G:0.01, T:0.43
Consensus pattern (19 bp):
AATAATTTATAAAATATAA
Found at i:48843 original size:31 final size:29
Alignment explanation
Indices: 48775--48871 Score: 98
Period size: 31 Copynumber: 3.4 Consensus size: 29
48765 AAATATAAAA
*
48775 TAATTTATAAAATATAAAATATTTATCAAT
1 TAATTTATAAAATGT-AAATATTTATCAAT
* *
48805 GAA--TATAAAATGTAAATATTTATTTATAT
1 TAATTTATAAAATGTAAATATTTA-TCA-AT
48834 TAATTTATAAAATGTAAATA-TTA--AA-
1 TAATTTATAAAATGTAAATATTTATCAAT
48859 TAATTTATAAAAT
1 TAATTTATAAAAT
48872 ATTCATTTAT
Statistics
Matches: 59, Mismatches: 4, Indels: 13
0.78 0.05 0.17
Matches are distributed among these distances:
25 13 0.22
26 1 0.02
27 10 0.17
28 11 0.19
29 4 0.07
30 5 0.08
31 15 0.25
ACGTcount: A:0.53, C:0.01, G:0.03, T:0.43
Consensus pattern (29 bp):
TAATTTATAAAATGTAAATATTTATCAAT
Found at i:51739 original size:2 final size:2
Alignment explanation
Indices: 51732--51776 Score: 90
Period size: 2 Copynumber: 22.5 Consensus size: 2
51722 CCTTTTGTAG
51732 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
51774 CT C
1 CT C
51777 ATTTCTTGTT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.00, C:0.51, G:0.00, T:0.49
Consensus pattern (2 bp):
CT
Found at i:59884 original size:2 final size:2
Alignment explanation
Indices: 59872--59908 Score: 56
Period size: 2 Copynumber: 18.5 Consensus size: 2
59862 GCATGCTAAT
* *
59872 TA TA AA TA TA TA TA TA TA TA TA TA TA TG TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
59909 GATAGGATCT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (2 bp):
TA
Found at i:61666 original size:19 final size:19
Alignment explanation
Indices: 61642--61679 Score: 60
Period size: 19 Copynumber: 2.0 Consensus size: 19
61632 ATTATGAACT
61642 TTATTAT-AATAAATCATAA
1 TTATTATAAATAAAT-ATAA
61661 TTATTATAAATAAATATAA
1 TTATTATAAATAAATATAA
61680 AAAGTTTCAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 11 0.61
20 7 0.39
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (19 bp):
TTATTATAAATAAATATAA
Found at i:62178 original size:2 final size:2
Alignment explanation
Indices: 62171--62214 Score: 61
Period size: 2 Copynumber: 22.0 Consensus size: 2
62161 AGTTACATCA
* * *
62171 AT AT AT AT AT AT AT AT GT GT GT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
62213 AT
1 AT
62215 TTTACTTAGG
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.43, C:0.00, G:0.07, T:0.50
Consensus pattern (2 bp):
AT
Found at i:62690 original size:4 final size:4
Alignment explanation
Indices: 62683--62800 Score: 128
Period size: 4 Copynumber: 29.5 Consensus size: 4
62673 CCCCCCACAC
* * * * * *
62683 ATAT ATAT ACAT ACAT ATAT ATAC ATAC ATAT ATAT ACAT ACAT ATAT
1 ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT
* * * * * *
62731 ATAC ATAC ATAT ATAT ATAC ATAG ATAT ATAT ATAT ATAC ATAC ATAT
1 ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT
62779 ATAT ATAT ATAT ATAT ATAT AT
1 ATAT ATAT ATAT ATAT ATAT AT
62801 GAAGTTTTCG
Statistics
Matches: 101, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
4 101 1.00
ACGTcount: A:0.50, C:0.09, G:0.01, T:0.40
Consensus pattern (4 bp):
ATAT
Found at i:62800 original size:10 final size:10
Alignment explanation
Indices: 62683--62800 Score: 128
Period size: 10 Copynumber: 11.8 Consensus size: 10
62673 CCCCCCACAC
*
62683 ATATATATAC
1 ATATATATAT
*
62693 ATACATATAT
1 ATATATATAT
* *
62703 ATACATACAT
1 ATATATATAT
*
62713 ATATATACAT
1 ATATATATAT
*
62723 ACATATATAT
1 ATATATATAT
* *
62733 ACATACATAT
1 ATATATATAT
*
62743 ATATATACAT
1 ATATATATAT
*
62753 AGATATATAT
1 ATATATATAT
*
62763 ATATATACAT
1 ATATATATAT
*
62773 ACATATATAT
1 ATATATATAT
62783 ATATATATAT
1 ATATATATAT
62793 ATATATAT
1 ATATATAT
62801 GAAGTTTTCG
Statistics
Matches: 91, Mismatches: 17, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
10 91 1.00
ACGTcount: A:0.50, C:0.09, G:0.01, T:0.40
Consensus pattern (10 bp):
ATATATATAT
Found at i:62800 original size:14 final size:14
Alignment explanation
Indices: 62681--62797 Score: 165
Period size: 14 Copynumber: 8.8 Consensus size: 14
62671 CCCCCCCCAC
62681 ACATATATATACAT
1 ACATATATATACAT
62695 ACATATATATACAT
1 ACATATATATACAT
62709 ACATATATATACAT
1 ACATATATATACAT
62723 ACATATATATACAT
1 ACATATATATACAT
62737 ACATATATAT--AT
1 ACATATATATACAT
*
62749 ACATAGATAT--AT
1 ACATATATATACAT
62761 --ATATATATACAT
1 ACATATATATACAT
*
62773 ACATATATATATAT
1 ACATATATATACAT
*
62787 ATATATATATA
1 ACATATATATA
62798 TATGAAGTTT
Statistics
Matches: 95, Mismatches: 4, Indels: 8
0.89 0.04 0.07
Matches are distributed among these distances:
10 7 0.07
12 15 0.16
14 73 0.77
ACGTcount: A:0.50, C:0.10, G:0.01, T:0.38
Consensus pattern (14 bp):
ACATATATATACAT
Found at i:63414 original size:21 final size:21
Alignment explanation
Indices: 63371--63433 Score: 58
Period size: 21 Copynumber: 3.0 Consensus size: 21
63361 TTGAGTTGAA
* *
63371 TTATGATTTAATATTT-AATAT
1 TTATTATTTAA-ATTTAAAAAT
*
63392 TTTTTATTTAAATTTAAAAAT
1 TTATTATTTAAATTTAAAAAT
*
63413 TTATT-TTTACTATTTAAAAAT
1 TTATTATTTA-AATTTAAAAAT
63434 ATGAATAAAT
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
20 8 0.23
21 27 0.77
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.57
Consensus pattern (21 bp):
TTATTATTTAAATTTAAAAAT
Found at i:63970 original size:94 final size:96
Alignment explanation
Indices: 63809--64003 Score: 376
Period size: 94 Copynumber: 2.1 Consensus size: 96
63799 GGTTGCGGCC
63809 GCCATAGACAAGAAGAAGAAGAAAATTGAGGAAAGGGTTATATGCATGATGGAGATGTATATTTC
1 GCCATAGACAAGAAGAAGAAGAAAATTGAGGAAAGGGTTATATGCATGATGGAGATGTATATTTC
63874 ATGAGA-TTA-TTTTGCAATGTCAATATATA
66 ATGAGATTTATTTTTGCAATGTCAATATATA
63903 GCCATAGACAAGAAGAAGAAGAAAATTGAGGAAAGGGTTATATGCATGATGGAGATGTATATTTC
1 GCCATAGACAAGAAGAAGAAGAAAATTGAGGAAAGGGTTATATGCATGATGGAGATGTATATTTC
63968 ATGAGATTTATTTTTGCAATGTCAATATATA
66 ATGAGATTTATTTTTGCAATGTCAATATATA
63999 GCCAT
1 GCCAT
64004 TCAGGTATAA
Statistics
Matches: 99, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
94 71 0.72
95 3 0.03
96 25 0.25
ACGTcount: A:0.39, C:0.08, G:0.23, T:0.29
Consensus pattern (96 bp):
GCCATAGACAAGAAGAAGAAGAAAATTGAGGAAAGGGTTATATGCATGATGGAGATGTATATTTC
ATGAGATTTATTTTTGCAATGTCAATATATA
Found at i:65057 original size:2 final size:2
Alignment explanation
Indices: 65050--65083 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
65040 ACTTCACCAC
*
65050 CT CT CT CT CT CT CT CT CT CT CT CT CT CT GT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
65084 TGAAAGAGAC
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.00, C:0.47, G:0.03, T:0.50
Consensus pattern (2 bp):
CT
Found at i:76470 original size:21 final size:21
Alignment explanation
Indices: 76444--76488 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
76434 TGAATATGTA
76444 TTATTTATATAAATAATAAAT
1 TTATTTATATAAATAATAAAT
* **
76465 TTATTTTTATTGATAATAAAT
1 TTATTTATATAAATAATAAAT
76486 TTA
1 TTA
76489 GATATCTAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.53
Consensus pattern (21 bp):
TTATTTATATAAATAATAAAT
Found at i:77487 original size:17 final size:17
Alignment explanation
Indices: 77465--77497 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
77455 AAATAGTCTT
77465 TTAAATATAA-AATAAAG
1 TTAAATA-AATAATAAAG
77482 TTAAATAAATAATAAA
1 TTAAATAAATAATAAA
77498 AAAATTATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 2 0.13
17 13 0.87
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.30
Consensus pattern (17 bp):
TTAAATAAATAATAAAG
Found at i:77770 original size:17 final size:18
Alignment explanation
Indices: 77750--77784 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
77740 TCTTATCATG
77750 TAATATATCA-CATTATA
1 TAATATATCATCATTATA
*
77767 TAATATATTATCATTATA
1 TAATATATCATCATTATA
77785 CATAGTACTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.46, C:0.09, G:0.00, T:0.46
Consensus pattern (18 bp):
TAATATATCATCATTATA
Found at i:83583 original size:18 final size:19
Alignment explanation
Indices: 83549--83586 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
83539 TCTTAAACAC
83549 ACAATTCTCAGCCTTAGAA
1 ACAATTCTCAGCCTTAGAA
83568 ACAATTCTCA-CCTTAGAA
1 ACAATTCTCAGCCTTAGAA
83586 A
1 A
83587 GCATACCTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 9 0.47
19 10 0.53
ACGTcount: A:0.39, C:0.26, G:0.08, T:0.26
Consensus pattern (19 bp):
ACAATTCTCAGCCTTAGAA
Found at i:85786 original size:22 final size:24
Alignment explanation
Indices: 85745--85792 Score: 64
Period size: 22 Copynumber: 2.1 Consensus size: 24
85735 ATCTAGATCA
*
85745 TTTTAATTAAAATTTTATATAATT
1 TTTTAATTAAAATTTAATATAATT
*
85769 TTTTAATT-AAA-TTAATATCATT
1 TTTTAATTAAAATTTAATATAATT
85791 TT
1 TT
85793 ACTTATTAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
22 11 0.50
23 3 0.14
24 8 0.36
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.58
Consensus pattern (24 bp):
TTTTAATTAAAATTTAATATAATT
Found at i:86200 original size:27 final size:30
Alignment explanation
Indices: 86146--86207 Score: 85
Period size: 27 Copynumber: 2.2 Consensus size: 30
86136 GATAATTATT
*
86146 ATATTTTATTATATTATAATTATATTTAAA
1 ATATTTTATTATATTATAATAATATTTAAA
*
86176 ATATTTTA-TAT-TTAT-ATAATTTTTAAA
1 ATATTTTATTATATTATAATAATATTTAAA
86203 ATATT
1 ATATT
86208 AATAATTCGT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
27 15 0.50
28 4 0.13
29 3 0.10
30 8 0.27
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (30 bp):
ATATTTTATTATATTATAATAATATTTAAA
Found at i:86227 original size:27 final size:27
Alignment explanation
Indices: 86155--86227 Score: 69
Period size: 27 Copynumber: 2.7 Consensus size: 27
86145 TATATTTTAT
*
86155 TATATT-ATAATTATATTTAAAATATTT
1 TATATTCAT-ATTATATTTAAAATATTA
* * *
86182 TATATTTATATAATTTTTAAAATATTA
1 TATATTCATATTATATTTAAAATATTA
*
86209 -ATAATTCGTATTATATTTA
1 TAT-ATTCATATTATATTTA
86228 TATAATCAAG
Statistics
Matches: 37, Mismatches: 7, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
26 2 0.05
27 33 0.89
28 2 0.05
ACGTcount: A:0.42, C:0.01, G:0.01, T:0.55
Consensus pattern (27 bp):
TATATTCATATTATATTTAAAATATTA
Found at i:86558 original size:14 final size:14
Alignment explanation
Indices: 86541--86572 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
86531 ATCATTAAAT
*
86541 AAATATATTTAATG
1 AAATACATTTAATG
86555 AAATACATTTAATG
1 AAATACATTTAATG
86569 AAAT
1 AAAT
86573 TAAAATTATC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.53, C:0.03, G:0.06, T:0.38
Consensus pattern (14 bp):
AAATACATTTAATG
Found at i:86605 original size:19 final size:19
Alignment explanation
Indices: 86534--86623 Score: 53
Period size: 19 Copynumber: 4.7 Consensus size: 19
86524 TTTATTTATC
* *
86534 ATTAAATAAATA-TATTTA
1 ATTAAATAAATATTAATAA
* *
86552 ATGAAATACAT-TTAATGAA
1 ATTAAATAAATATTAAT-AA
*
86571 ATTAAA-ATTATCATTAATAA
1 ATTAAATA-AAT-ATTAATAA
86591 ATTAAATAAATATT-ATAA
1 ATTAAATAAATATTAATAA
* *
86609 TAATAAAAAAATATT
1 -ATTAAATAAATATT
86624 TTAAATAATA
Statistics
Matches: 56, Mismatches: 9, Indels: 13
0.72 0.12 0.17
Matches are distributed among these distances:
18 17 0.30
19 23 0.41
20 10 0.18
21 6 0.11
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.38
Consensus pattern (19 bp):
ATTAAATAAATATTAATAA
Found at i:86632 original size:20 final size:19
Alignment explanation
Indices: 86593--86634 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
86583 ATTAATAAAT
*
86593 TAAATAAATATTATAATAA
1 TAAAAAAATATTATAATAA
*
86612 TAAAAAAATATTTTAAATAA
1 TAAAAAAATATTAT-AATAA
86632 TAA
1 TAA
86635 TTTAGAAATA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 12 0.60
20 8 0.40
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (19 bp):
TAAAAAAATATTATAATAA
Found at i:87694 original size:13 final size:12
Alignment explanation
Indices: 87678--87711 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
87668 ATAAAATACG
87678 AATATAATATAAA
1 AATATAATAT-AA
*
87691 AATATGATATAA
1 AATATAATATAA
87703 AATATAATA
1 AATATAATA
87712 CAACACAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
12 10 0.53
13 9 0.47
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (12 bp):
AATATAATATAA
Found at i:87708 original size:20 final size:19
Alignment explanation
Indices: 87670--87709 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 19
87660 ATATGATTAT
*
87670 AAAATACGAATATAATATA
1 AAAATACGAATAAAATATA
*
87689 AAAATATGATATAAAATATA
1 AAAATACGA-ATAAAATATA
87709 A
1 A
87710 TACAACACAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 8 0.44
20 10 0.56
ACGTcount: A:0.65, C:0.03, G:0.05, T:0.28
Consensus pattern (19 bp):
AAAATACGAATAAAATATA
Found at i:88200 original size:12 final size:12
Alignment explanation
Indices: 88185--88236 Score: 52
Period size: 12 Copynumber: 4.2 Consensus size: 12
88175 AAAATTGAGA
88185 TAAAAATATATT
1 TAAAAATATATT
*
88197 T-AAAATATTTTT
1 TAAAAATA-TATT
88209 TAAAAAATATATT
1 T-AAAAATATATT
* *
88222 TAAATATATTTT
1 TAAAAATATATT
88234 TAA
1 TAA
88237 TTTATATTTG
Statistics
Matches: 33, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
11 6 0.18
12 17 0.52
13 4 0.12
14 6 0.18
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (12 bp):
TAAAAATATATT
Found at i:88220 original size:25 final size:26
Alignment explanation
Indices: 88186--88234 Score: 91
Period size: 25 Copynumber: 1.9 Consensus size: 26
88176 AAATTGAGAT
88186 AAAAATATATTTAAA-ATATTTTTTA
1 AAAAATATATTTAAATATATTTTTTA
88211 AAAAATATATTTAAATATATTTTT
1 AAAAATATATTTAAATATATTTTT
88235 AATTTATATT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 15 0.65
26 8 0.35
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (26 bp):
AAAAATATATTTAAATATATTTTTTA
Found at i:93968 original size:20 final size:20
Alignment explanation
Indices: 93943--94001 Score: 73
Period size: 20 Copynumber: 2.9 Consensus size: 20
93933 ACTGCCAAGG
93943 AAATGTATCGATACATTAGT
1 AAATGTATCGATACATTAGT
***
93963 AAATGTATCGATACATGCTT
1 AAATGTATCGATACATTAGT
93983 ACAATTGTATCGATACATT
1 A-AA-TGTATCGATACATT
94002 CTGGGTTTTT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
20 18 0.55
21 2 0.06
22 13 0.39
ACGTcount: A:0.37, C:0.14, G:0.14, T:0.36
Consensus pattern (20 bp):
AAATGTATCGATACATTAGT
Found at i:94634 original size:45 final size:45
Alignment explanation
Indices: 94570--94658 Score: 178
Period size: 45 Copynumber: 2.0 Consensus size: 45
94560 TTAGCCCCTA
94570 CATAGCTCCAAACTATTTCCCCTCATACCATAACTCAAATAACTC
1 CATAGCTCCAAACTATTTCCCCTCATACCATAACTCAAATAACTC
94615 CATAGCTCCAAACTATTTCCCCTCATACCATAACTCAAATAACT
1 CATAGCTCCAAACTATTTCCCCTCATACCATAACTCAAATAACT
94659 TCTTTTTTCA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.36, C:0.35, G:0.02, T:0.27
Consensus pattern (45 bp):
CATAGCTCCAAACTATTTCCCCTCATACCATAACTCAAATAACTC
Found at i:100878 original size:15 final size:15
Alignment explanation
Indices: 100855--100889 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
100845 GTAGTATATC
*
100855 TTTTGTTTTTAATTA
1 TTTTATTTTTAATTA
*
100870 TTTTATTTTTTATTA
1 TTTTATTTTTAATTA
100885 TTTTA
1 TTTTA
100890 AATAATATTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.20, C:0.00, G:0.03, T:0.77
Consensus pattern (15 bp):
TTTTATTTTTAATTA
Found at i:101054 original size:19 final size:19
Alignment explanation
Indices: 101010--101057 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
101000 TATAGATAAA
*
101010 ATTAAATATCTAAAATTAT
1 ATTAAATATTTAAAATTAT
** *
101029 AGAAAATATTTGAAATTAT
1 ATTAAATATTTAAAATTAT
101048 ATTAAATATT
1 ATTAAATATT
101058 ATTAAAGCTA
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.52, C:0.02, G:0.04, T:0.42
Consensus pattern (19 bp):
ATTAAATATTTAAAATTAT
Found at i:101193 original size:21 final size:21
Alignment explanation
Indices: 101130--101207 Score: 72
Period size: 21 Copynumber: 3.7 Consensus size: 21
101120 CAAAATTGCA
*
101130 TCAATGATTAGTAAA-TTATA-
1 TCAATG-TTATTAAATTTATAT
* *
101150 TCATAGGTTATTAAAATTATAT
1 TCA-ATGTTATTAAATTTATAT
101172 TCAATGTTATTAAATTTATAT
1 TCAATGTTATTAAATTTATAT
*
101193 TAAAT-TTATATAAAT
1 TCAATGTTAT-TAAAT
101208 CATATTAAAA
Statistics
Matches: 49, Mismatches: 5, Indels: 7
0.80 0.08 0.11
Matches are distributed among these distances:
20 14 0.29
21 32 0.65
22 3 0.06
ACGTcount: A:0.44, C:0.04, G:0.06, T:0.46
Consensus pattern (21 bp):
TCAATGTTATTAAATTTATAT
Found at i:101195 original size:11 final size:11
Alignment explanation
Indices: 101158--101216 Score: 61
Period size: 11 Copynumber: 5.6 Consensus size: 11
101148 TATCATAGGT
*
101158 TATTAAAATTA
1 TATTAAATTTA
* *
101169 TATTCAATGT-
1 TATTAAATTTA
101179 TATTAAATTTA
1 TATTAAATTTA
101190 TATTAAATTTA
1 TATTAAATTTA
*
101201 TA-TAAA-TCA
1 TATTAAATTTA
101210 TATTAAA
1 TATTAAA
101217 ACTACTAATT
Statistics
Matches: 40, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
9 4 0.10
10 16 0.40
11 20 0.50
ACGTcount: A:0.47, C:0.03, G:0.02, T:0.47
Consensus pattern (11 bp):
TATTAAATTTA
Found at i:101201 original size:20 final size:20
Alignment explanation
Indices: 101141--101216 Score: 73
Period size: 21 Copynumber: 3.7 Consensus size: 20
101131 CAATGATTAG
* * *
101141 TAAATTATATCATAGGTTAT
1 TAAATTATATTAAATGTTAT
*
101161 TAAAATTATATTCAATGTTAT
1 T-AAATTATATTAAATGTTAT
101182 TAAATTTATATTAAAT-TTAT
1 TAAA-TTATATTAAATGTTAT
*
101202 ATAAATCATATTAAA
1 -TAAATTATATTAAA
101217 ACTACTAATT
Statistics
Matches: 47, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
20 17 0.36
21 30 0.64
ACGTcount: A:0.46, C:0.04, G:0.04, T:0.46
Consensus pattern (20 bp):
TAAATTATATTAAATGTTAT
Found at i:101284 original size:21 final size:21
Alignment explanation
Indices: 101157--101286 Score: 69
Period size: 21 Copynumber: 6.4 Consensus size: 21
101147 ATATCATAGG
* *
101157 TTATTAAAATTATATTCAATG
1 TTATTAAAATTATATTAAATA
*
101178 TTATTAAATTTATATTAAAT-
1 TTATTAAAATTATATTAAATA
*
101198 TTA-TATAAATCATATTAAA-A
1 TTATTA-AAATTATATTAAATA
* * *
101218 CTACT--AATTA-ATGTAAAAA
1 TTATTAAAATTATAT-TAAATA
* * *
101237 TT-TACAAAATCAAATTAAA-A
1 TTAT-TAAAATTATATTAAATA
*
101257 CTCATTAAAATTATATTAAATA
1 -TTATTAAAATTATATTAAATA
101279 TTATTAAA
1 TTATTAAA
101287 GTCATTTTAT
Statistics
Matches: 82, Mismatches: 15, Indels: 24
0.68 0.12 0.20
Matches are distributed among these distances:
17 2 0.02
18 8 0.10
19 4 0.05
20 17 0.21
21 47 0.57
22 4 0.05
ACGTcount: A:0.51, C:0.06, G:0.02, T:0.42
Consensus pattern (21 bp):
TTATTAAAATTATATTAAATA
Found at i:101936 original size:3 final size:3
Alignment explanation
Indices: 101930--101964 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
101920 TTTGTAAAAT
101930 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
101965 TGTAATCATA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:102138 original size:24 final size:25
Alignment explanation
Indices: 102111--102157 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
102101 ATACTTGATT
102111 TATTAAATAA-TTAATATGTTTACG
1 TATTAAATAATTTAATATGTTTACG
* *
102135 TATTAACTAATTTAATATTTTTA
1 TATTAAATAATTTAATATGTTTA
102158 ATATAAGTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 9 0.45
25 11 0.55
ACGTcount: A:0.40, C:0.04, G:0.04, T:0.51
Consensus pattern (25 bp):
TATTAAATAATTTAATATGTTTACG
Found at i:102283 original size:14 final size:14
Alignment explanation
Indices: 102260--102306 Score: 51
Period size: 14 Copynumber: 3.2 Consensus size: 14
102250 AATTATTATC
*
102260 TAAATTTAAATATAA
1 TAAATATAAAT-TAA
102275 -AAATATAAATTAA
1 TAAATATAAATTAA
102288 TAAATAATAAAATTAA
1 TAAAT-AT-AAATTAA
102304 TAA
1 TAA
102307 TTAATTATTT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
13 3 0.11
14 13 0.46
15 2 0.07
16 10 0.36
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (14 bp):
TAAATATAAATTAA
Found at i:102300 original size:16 final size:17
Alignment explanation
Indices: 102271--102311 Score: 59
Period size: 16 Copynumber: 2.5 Consensus size: 17
102261 AAATTTAAAT
102271 ATAAA-AATATAAATTA
1 ATAAATAATATAAATTA
102287 ATAAATAATA-AAATTA
1 ATAAATAATATAAATTA
*
102303 ATAATTAAT
1 ATAAATAAT
102312 TATTTAACTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 19 0.83
17 4 0.17
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (17 bp):
ATAAATAATATAAATTA
Found at i:102375 original size:26 final size:26
Alignment explanation
Indices: 102325--102375 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
102315 TTAACTTTAA
*
102325 TTATTTTTATCTAAATTATACAAAAT
1 TTATTTTTATCTAAATTATAAAAAAT
*
102351 TTATTTTTAT-TAAATTCTTAAAAAA
1 TTATTTTTATCTAAATT-ATAAAAAA
102376 ATTTTAATAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 6 0.27
26 16 0.73
ACGTcount: A:0.43, C:0.06, G:0.00, T:0.51
Consensus pattern (26 bp):
TTATTTTTATCTAAATTATAAAAAAT
Found at i:103226 original size:32 final size:32
Alignment explanation
Indices: 103179--103249 Score: 79
Period size: 32 Copynumber: 2.2 Consensus size: 32
103169 CTTGAAATTT
* * *
103179 AAAATAATTCAAATTTTAAATGATCTGAACTC
1 AAAATGATTCAAATTTGAAATGATCTAAACTC
* * *
103211 AAAATGATTCGAATTTGAAATTATTTAAACTC
1 AAAATGATTCAAATTTGAAATGATCTAAACTC
*
103243 GAAATGA
1 AAAATGA
103250 CTTGAATAAT
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.46, C:0.10, G:0.10, T:0.34
Consensus pattern (32 bp):
AAAATGATTCAAATTTGAAATGATCTAAACTC
Found at i:114942 original size:58 final size:58
Alignment explanation
Indices: 114781--114947 Score: 210
Period size: 58 Copynumber: 2.9 Consensus size: 58
114771 GCATTTTTAT
*
114781 CACACTAAGTGACGCCAAGTCACCTAAATTTGGAT-AGCCACCAAGACGACCAAATTCG
1 CACACTAAGTGACGCCAAGTCACCTAAATTTGGATCA-CCACCAAGGCGACCAAATTCG
* ** * *
114839 TACACTAAGTGACGCCAAGTCACCTAAATTTGGATCGTCATCAAGGTGACCAAATTCG
1 CACACTAAGTGACGCCAAGTCACCTAAATTTGGATCACCACCAAGGCGACCAAATTCG
* * * * **
114897 CACATTAAGTGACACCAAGTCACCCAAACTTAAATCACCACCAAGGCGACC
1 CACACTAAGTGACGCCAAGTCACCTAAATTTGGATCACCACCAAGGCGACC
114948 CAGATTTACA
Statistics
Matches: 91, Mismatches: 17, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
58 91 1.00
ACGTcount: A:0.36, C:0.29, G:0.16, T:0.19
Consensus pattern (58 bp):
CACACTAAGTGACGCCAAGTCACCTAAATTTGGATCACCACCAAGGCGACCAAATTCG
Found at i:121405 original size:30 final size:29
Alignment explanation
Indices: 121371--121447 Score: 75
Period size: 33 Copynumber: 2.4 Consensus size: 29
121361 TTATATTTCA
*
121371 TATTATATCATATTTTTAG-TGTGTCTTAAT
1 TATTAT-TCATATTTTT-GTTATGTCTTAAT
121401 TATTATTTCCTCATATTTTTGTTATGTCTTAAT
1 TATTA--T--TCATATTTTTGTTATGTCTTAAT
121434 TATTATTCCATATT
1 TATTATT-CATATT
121448 ATGTTAATGC
Statistics
Matches: 40, Mismatches: 2, Indels: 10
0.77 0.04 0.19
Matches are distributed among these distances:
29 1 0.03
30 11 0.28
31 1 0.03
32 2 0.05
33 25 0.62
ACGTcount: A:0.25, C:0.10, G:0.06, T:0.58
Consensus pattern (29 bp):
TATTATTCATATTTTTGTTATGTCTTAAT
Found at i:121416 original size:33 final size:33
Alignment explanation
Indices: 121378--121440 Score: 101
Period size: 33 Copynumber: 1.9 Consensus size: 33
121368 TCATATTATA
*
121378 TCATATTTTTAG-TGTGTCTTAATTATTATTTCC
1 TCATATTTTT-GTTATGTCTTAATTATTATTTCC
121411 TCATATTTTTGTTATGTCTTAATTATTATT
1 TCATATTTTTGTTATGTCTTAATTATTATT
121441 CCATATTATG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
32 1 0.04
33 27 0.96
ACGTcount: A:0.22, C:0.10, G:0.08, T:0.60
Consensus pattern (33 bp):
TCATATTTTTGTTATGTCTTAATTATTATTTCC
Found at i:127844 original size:2 final size:2
Alignment explanation
Indices: 127837--127878 Score: 77
Period size: 2 Copynumber: 21.5 Consensus size: 2
127827 GATATTGCAA
127837 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
127878 A
1 A
127879 ATAATACATT
Statistics
Matches: 39, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 38 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:128197 original size:23 final size:23
Alignment explanation
Indices: 128105--128219 Score: 69
Period size: 23 Copynumber: 4.9 Consensus size: 23
128095 TAAATTTTAT
* *
128105 TTATTTAAATTAAATTTTAAATAA
1 TTATTTAAATTTAATTATAAAT-A
*
128129 TT-TTTAAATTTAAGTTGATTTAATTA
1 TTATTTAAATTTAA-TT-A--TAAATA
* **
128155 TTATTT-AATAATAAAAATAAATA
1 TTATTTAAAT-TTAATTATAAATA
128178 TTATTTAAATTTAATTATAAA-A
1 TTATTTAAATTTAATTATAAATA
*
128200 -TATATAAATATTAA-TATAAA
1 TTATTTAAAT-TTAATTATAAA
128220 ATAATATATA
Statistics
Matches: 72, Mismatches: 11, Indels: 19
0.71 0.11 0.19
Matches are distributed among these distances:
21 14 0.19
22 5 0.07
23 29 0.40
24 7 0.10
25 1 0.01
26 6 0.08
27 10 0.14
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (23 bp):
TTATTTAAATTTAATTATAAATA
Found at i:128212 original size:32 final size:34
Alignment explanation
Indices: 128160--128247 Score: 101
Period size: 32 Copynumber: 2.6 Consensus size: 34
128150 AATTATTATT
* * *
128160 TAATAATAAAAATAAATATTATTTAAATTTAAT-TA
1 TAATAAT-ATAATAAATATTATATAAA-ATAATATA
128195 TAA-AATAT-ATAAATATTAATATAAAATAATATA
1 TAATAATATAATAAATATT-ATATAAAATAATATA
128228 TAATAATATAATAAATATTA
1 TAATAATATAATAAATATTA
128248 AAACGGACTT
Statistics
Matches: 46, Mismatches: 3, Indels: 9
0.79 0.05 0.16
Matches are distributed among these distances:
32 13 0.28
33 12 0.26
34 9 0.20
35 12 0.26
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (34 bp):
TAATAATATAATAAATATTATATAAAATAATATA
Found at i:128225 original size:24 final size:22
Alignment explanation
Indices: 128173--128230 Score: 64
Period size: 21 Copynumber: 2.6 Consensus size: 22
128163 TAATAAAAAT
* *
128173 AAATATTATTTAAATTTAATTA
1 AAATAATATATAAATTTAATTA
*
128195 TAA-AATATATAAATATTAATATA
1 AAATAATATATAAAT-TTAAT-TA
128218 AAATAATATATAA
1 AAATAATATATAA
128231 TAATATAATA
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
21 9 0.31
22 7 0.24
23 4 0.14
24 9 0.31
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (22 bp):
AAATAATATATAAATTTAATTA
Found at i:128226 original size:10 final size:10
Alignment explanation
Indices: 128193--128238 Score: 58
Period size: 10 Copynumber: 4.5 Consensus size: 10
128183 TAAATTTAAT
128193 TATAAAAT-A
1 TATAAAATAA
128202 TATAAATATTAA
1 TATAAA-A-TAA
128214 TATAAAATAA
1 TATAAAATAA
*
128224 TATATAATAA
1 TATAAAATAA
128234 TATAA
1 TATAA
128239 TAAATATTAA
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
9 6 0.19
10 17 0.53
11 2 0.06
12 7 0.22
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (10 bp):
TATAAAATAA
Found at i:128236 original size:20 final size:21
Alignment explanation
Indices: 128193--128238 Score: 67
Period size: 20 Copynumber: 2.2 Consensus size: 21
128183 TAAATTTAAT
*
128193 TATAAAATATATAAATATTAA
1 TATAAAATATATAAATAATAA
*
128214 TATAAAATA-ATATATAATAA
1 TATAAAATATATAAATAATAA
128234 TATAA
1 TATAA
128239 TAAATATTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 14 0.61
21 9 0.39
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (21 bp):
TATAAAATATATAAATAATAA
Found at i:128929 original size:15 final size:15
Alignment explanation
Indices: 128868--128934 Score: 57
Period size: 15 Copynumber: 4.5 Consensus size: 15
128858 ATAAATATAA
*
128868 TAATATAA-TAATAT
1 TAATATAATTAATTT
* *
128882 TATTACTAATTAAATT
1 TAATA-TAATTAATTT
*
128898 TAATA-ACTTAATTT
1 TAATATAATTAATTT
*
128912 TAATATAATTATTTT
1 TAATATAATTAATTT
*
128927 TAAAATAA
1 TAATATAA
128935 AATTATAAAA
Statistics
Matches: 41, Mismatches: 9, Indels: 5
0.75 0.16 0.09
Matches are distributed among these distances:
14 16 0.39
15 17 0.41
16 8 0.20
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.48
Consensus pattern (15 bp):
TAATATAATTAATTT
Found at i:130588 original size:15 final size:15
Alignment explanation
Indices: 130569--130601 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
130559 TAAGAATTTT
130569 ATTTTTATTAAA-AA
1 ATTTTTATTAAATAA
*
130583 ATTTTTGTTAAATAA
1 ATTTTTATTAAATAA
130598 ATTT
1 ATTT
130602 ATTTGATAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 11 0.65
15 6 0.35
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (15 bp):
ATTTTTATTAAATAA
Found at i:132228 original size:16 final size:17
Alignment explanation
Indices: 132197--132230 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
132187 GTATCAATTT
*
132197 TTTAAATATATTTATAA
1 TTTAAATATATATATAA
132214 TTTAAAATATATATATA
1 TTT-AAATATATATATA
132231 TGAGTTTTAC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 3 0.20
18 12 0.80
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (17 bp):
TTTAAATATATATATAA
Found at i:134177 original size:12 final size:12
Alignment explanation
Indices: 134160--134225 Score: 60
Period size: 12 Copynumber: 5.4 Consensus size: 12
134150 ATACTCATAC
* *
134160 TTTAATTTTATT
1 TTTAATTTAATA
134172 TTTAATTTAATA
1 TTTAATTTAATA
** *
134184 TTTAATAAAAAAA
1 TTTAAT-TTAATA
* *
134197 TTTAATTTATTT
1 TTTAATTTAATA
134209 TTTAATTTAATA
1 TTTAATTTAATA
134221 TTTAA
1 TTTAA
134226 AAAATTTTAT
Statistics
Matches: 41, Mismatches: 12, Indels: 2
0.75 0.22 0.04
Matches are distributed among these distances:
12 32 0.78
13 9 0.22
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (12 bp):
TTTAATTTAATA
Found at i:134244 original size:37 final size:37
Alignment explanation
Indices: 134160--134229 Score: 117
Period size: 37 Copynumber: 1.9 Consensus size: 37
134150 ATACTCATAC
134160 TTTAATTT-TATTTTTAATTTAATATTTAATAAAAAAA
1 TTTAATTTAT-TTTTTAATTTAATATTTAATAAAAAAA
134197 TTTAATTTATTTTTTAATTTAATATTTAA-AAAA
1 TTTAATTTATTTTTTAATTTAATATTTAATAAAA
134230 TTTTATTTAT
Statistics
Matches: 32, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
36 4 0.12
37 27 0.84
38 1 0.03
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (37 bp):
TTTAATTTATTTTTTAATTTAATATTTAATAAAAAAA
Found at i:135366 original size:21 final size:21
Alignment explanation
Indices: 135340--135450 Score: 77
Period size: 21 Copynumber: 5.4 Consensus size: 21
135330 CACAAAAAAT
135340 ATATATAAAAATAAATTATAA
1 ATATATAAAAATAAATTATAA
*
135361 ATATATAAAAAT--ATCATAAA
1 ATATATAAAAATAAATTAT-AA
* * *
135381 AAATATATAAATATATTATTAA
1 ATATATAAAAATAAATTA-TAA
* * *
135403 AT-TATTAATATAAATTATTA
1 ATATATAAAAATAAATTATAA
* * **
135423 ATATATTAAATTTTA-TATAA
1 ATATATAAAAATAAATTATAA
135443 ATATATAA
1 ATATATAA
135451 TATATTTTAA
Statistics
Matches: 69, Mismatches: 16, Indels: 11
0.72 0.17 0.11
Matches are distributed among these distances:
19 4 0.06
20 27 0.39
21 31 0.45
22 6 0.09
23 1 0.01
ACGTcount: A:0.59, C:0.01, G:0.00, T:0.41
Consensus pattern (21 bp):
ATATATAAAAATAAATTATAA
Found at i:135369 original size:8 final size:8
Alignment explanation
Indices: 135340--135455 Score: 57
Period size: 8 Copynumber: 14.8 Consensus size: 8
135330 CACAAAAAAT
135340 ATATATAA
1 ATATATAA
135348 A-A-ATAA
1 ATATATAA
135354 AT-TATAA
1 ATATATAA
135361 ATATATAA
1 ATATATAA
* *
135369 AAATAT-C
1 ATATATAA
*
135376 ATA-AAAA
1 ATATATAA
135383 ATATATAA
1 ATATATAA
*
135391 ATATATTA
1 ATATATAA
* * *
135399 TTAAATTA
1 ATATATAA
*
135407 TTAATATAA
1 AT-ATATAA
*
135416 AT-TATTA
1 ATATATAA
135423 ATATATTAA
1 ATATA-TAA
135432 ATTTTATATAA
1 A---TATATAA
135443 ATATAT-A
1 ATATATAA
135450 ATATAT
1 ATATAT
135456 TTTAAAATAA
Statistics
Matches: 83, Mismatches: 14, Indels: 23
0.69 0.12 0.19
Matches are distributed among these distances:
6 6 0.07
7 25 0.30
8 36 0.43
9 8 0.10
11 4 0.05
12 4 0.05
ACGTcount: A:0.58, C:0.01, G:0.00, T:0.41
Consensus pattern (8 bp):
ATATATAA
Found at i:135384 original size:22 final size:22
Alignment explanation
Indices: 135334--135396 Score: 74
Period size: 22 Copynumber: 2.9 Consensus size: 22
135324 ATATAACACA
135334 AAAAATATATATAAAAATA-AAT
1 AAAAA-ATATATAAAAATATAAT
* * *
135356 TATAAATATATAAAAATATCAT
1 AAAAAATATATAAAAATATAAT
*
135378 AAAAAATATATAAATATAT
1 AAAAAATATATAAAAATAT
135397 TATTAAATTA
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
21 13 0.38
22 21 0.62
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.32
Consensus pattern (22 bp):
AAAAAATATATAAAAATATAAT
Found at i:135418 original size:13 final size:13
Alignment explanation
Indices: 135385--135427 Score: 63
Period size: 13 Copynumber: 3.4 Consensus size: 13
135375 CATAAAAAAT
135385 ATATAAATATATT-
1 ATATAAAT-TATTA
135398 AT-TAAATTATTA
1 ATATAAATTATTA
135410 ATATAAATTATTA
1 ATATAAATTATTA
135423 ATATA
1 ATATA
135428 TTAAATTTTA
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
11 4 0.14
12 7 0.25
13 17 0.61
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (13 bp):
ATATAAATTATTA
Found at i:135440 original size:27 final size:29
Alignment explanation
Indices: 135382--135456 Score: 90
Period size: 27 Copynumber: 2.7 Consensus size: 29
135372 TATCATAAAA
135382 AATATATAA-ATAT-AT-TATTAAATTATT
1 AATATA-AATATATAATATATTAAATTATT
135409 AATATAAAT-TATTAATATATTAAATT-TT
1 AATATAAATATA-TAATATATTAAATTATT
135437 -ATATAAATATATAATATATT
1 AATATAAATATATAATATATT
135457 TTAAAATAAT
Statistics
Matches: 43, Mismatches: 0, Indels: 10
0.81 0.00 0.19
Matches are distributed among these distances:
26 4 0.09
27 24 0.56
28 6 0.14
29 9 0.21
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (29 bp):
AATATAAATATATAATATATTAAATTATT
Found at i:136562 original size:16 final size:16
Alignment explanation
Indices: 136521--136562 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 16
136511 TATTTGACAG
*
136521 AAATATAA-TTGTAAT
1 AAATATAATTTGAAAT
* *
136536 AAATTTTATTTGAAAT
1 AAATATAATTTGAAAT
136552 AAATATAATTT
1 AAATATAATTT
136563 CAATAATTTA
Statistics
Matches: 21, Mismatches: 5, Indels: 1
0.78 0.19 0.04
Matches are distributed among these distances:
15 6 0.29
16 15 0.71
ACGTcount: A:0.50, C:0.00, G:0.05, T:0.45
Consensus pattern (16 bp):
AAATATAATTTGAAAT
Found at i:140783 original size:18 final size:18
Alignment explanation
Indices: 140760--140797 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
140750 GCATTGATGG
140760 TTGGATTTTAGGAGAAAA
1 TTGGATTTTAGGAGAAAA
*
140778 TTGGATTTTAGGAGGAAA
1 TTGGATTTTAGGAGAAAA
140796 TT
1 TT
140798 AGTTTTATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.34, C:0.00, G:0.29, T:0.37
Consensus pattern (18 bp):
TTGGATTTTAGGAGAAAA
Found at i:144325 original size:9 final size:9
Alignment explanation
Indices: 144311--144339 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
144301 AGATGAAAGG
144311 TTGTAACAC
1 TTGTAACAC
144320 TTGTAACAC
1 TTGTAACAC
144329 TTGTAACAC
1 TTGTAACAC
144338 TT
1 TT
144340 TTGGGTAGGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.31, C:0.21, G:0.10, T:0.38
Consensus pattern (9 bp):
TTGTAACAC
Found at i:144699 original size:16 final size:16
Alignment explanation
Indices: 144667--144700 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
144657 TTAACATGTA
*
144667 ATGAATCATGAATTTT
1 ATGAATCATGAAGTTT
*
144683 ATGAATCATTAAGTTT
1 ATGAATCATGAAGTTT
144699 AT
1 AT
144701 CATGTAGTAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.06, G:0.12, T:0.44
Consensus pattern (16 bp):
ATGAATCATGAAGTTT
Found at i:147945 original size:3 final size:3
Alignment explanation
Indices: 147897--147927 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
147887 TCCTTTGTCC
147897 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
147928 CAGACATCCA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:148118 original size:32 final size:31
Alignment explanation
Indices: 148076--148141 Score: 80
Period size: 32 Copynumber: 2.1 Consensus size: 31
148066 TTTTTACGTG
148076 ATATTAATTTTAATTA-TTAATTATATATTTTT
1 ATATTAATTTTAATTATTTAATT-T-TATTTTT
* *
148108 ATATTTATTTTATTTATTTTAATTTTATTTTT
1 ATATTAATTTTAATTA-TTTAATTTTATTTTT
148140 AT
1 AT
148142 GTAAAATTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
32 23 0.77
33 1 0.03
34 6 0.20
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (31 bp):
ATATTAATTTTAATTATTTAATTTTATTTTT
Found at i:148132 original size:15 final size:15
Alignment explanation
Indices: 148105--148137 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
148095 ATTATATATT
148105 TTTATATTTATTTTA
1 TTTATATTTATTTTA
148120 TTTAT-TTTAATTTTA
1 TTTATATTT-ATTTTA
148135 TTT
1 TTT
148138 TTATGTAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 3 0.18
15 14 0.82
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (15 bp):
TTTATATTTATTTTA
Found at i:148134 original size:20 final size:20
Alignment explanation
Indices: 148077--148138 Score: 63
Period size: 20 Copynumber: 3.0 Consensus size: 20
148067 TTTTACGTGA
* *
148077 TATTAATTTTAATTATTA-AT
1 TATTTATTTTAATT-TTATTT
* *
148097 TATATATTTTTATATTTATTT
1 TATTTATTTTAAT-TTTATTT
148118 TATTTATTTTAATTTTATTT
1 TATTTATTTTAATTTTATTT
148138 T
1 T
148139 TATGTAAAAT
Statistics
Matches: 34, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
20 21 0.62
21 13 0.38
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (20 bp):
TATTTATTTTAATTTTATTT
Found at i:148141 original size:21 final size:21
Alignment explanation
Indices: 148096--148138 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
148086 TAATTATTAA
*
148096 TTATATATTTTTATATTTATT
1 TTATATATTTTAATATTTATT
*
148117 TTATTTATTTTAAT-TTTATT
1 TTATATATTTTAATATTTATT
148137 TT
1 TT
148139 TATGTAAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 8 0.40
21 12 0.60
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (21 bp):
TTATATATTTTAATATTTATT
Found at i:149064 original size:16 final size:17
Alignment explanation
Indices: 149037--149078 Score: 59
Period size: 17 Copynumber: 2.5 Consensus size: 17
149027 TTTTGTTTCT
149037 AGAAAAAGAGGG-AGAAA
1 AGAAAAA-AGGGCAGAAA
*
149054 ATAAAAAAGGGCAGAAA
1 AGAAAAAAGGGCAGAAA
149071 AGAAAAAA
1 AGAAAAAA
149079 AAATTGAGAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
16 4 0.18
17 18 0.82
ACGTcount: A:0.69, C:0.02, G:0.26, T:0.02
Consensus pattern (17 bp):
AGAAAAAAGGGCAGAAA
Found at i:149079 original size:18 final size:17
Alignment explanation
Indices: 149037--149079 Score: 52
Period size: 16 Copynumber: 2.5 Consensus size: 17
149027 TTTTGTTTCT
*
149037 AGAAAAAGAGGGAGAAA
1 AGAAAAAAAGGGAGAAA
*
149054 A-TAAAAAAGGGCAGAAA
1 AGAAAAAAAGGG-AGAAA
149071 AGAAAAAAA
1 AGAAAAAAA
149080 AATTGAGAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 3
0.78 0.11 0.11
Matches are distributed among these distances:
16 8 0.38
17 7 0.33
18 6 0.29
ACGTcount: A:0.70, C:0.02, G:0.26, T:0.02
Consensus pattern (17 bp):
AGAAAAAAAGGGAGAAA
Found at i:151603 original size:28 final size:28
Alignment explanation
Indices: 151567--151628 Score: 70
Period size: 28 Copynumber: 2.2 Consensus size: 28
151557 AGTACAGTCC
* * *
151567 ACAAAAAATGATGTCAGAGATGTGGAAA
1 ACAAAAAATAAAGTAAGAGATGTGGAAA
* **
151595 ACAAGAAATAAAGTAATTGATGTGGAAA
1 ACAAAAAATAAAGTAAGAGATGTGGAAA
151623 ACAAAA
1 ACAAAA
151629 CATGCAGAAG
Statistics
Matches: 27, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.55, C:0.06, G:0.21, T:0.18
Consensus pattern (28 bp):
ACAAAAAATAAAGTAAGAGATGTGGAAA
Found at i:155991 original size:22 final size:22
Alignment explanation
Indices: 155934--155991 Score: 71
Period size: 22 Copynumber: 2.6 Consensus size: 22
155924 TAATTATAAA
*
155934 TCATAAATATTTTAATATATTAT
1 TCAT-AATATTTTAAAATATTAT
*
155957 TCATATTATTTTAAAATATTAT
1 TCATAATATTTTAAAATATTAT
* *
155979 TTATAATAATTTA
1 TCATAATATTTTA
155992 GATTGAATCA
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
22 26 0.87
23 4 0.13
ACGTcount: A:0.43, C:0.03, G:0.00, T:0.53
Consensus pattern (22 bp):
TCATAATATTTTAAAATATTAT
Found at i:156939 original size:24 final size:24
Alignment explanation
Indices: 156911--156962 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
156901 AAAAATTAAA
*
156911 ATTATTCAAA-CTTAATTATATTTT
1 ATTATTCAAATC-TAACTATATTTT
*
156935 ATTATTCGAATCTAACTATATTTT
1 ATTATTCAAATCTAACTATATTTT
156959 ATTA
1 ATTA
156963 ATCTTTATAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 24 0.96
25 1 0.04
ACGTcount: A:0.37, C:0.10, G:0.02, T:0.52
Consensus pattern (24 bp):
ATTATTCAAATCTAACTATATTTT
Found at i:157357 original size:17 final size:16
Alignment explanation
Indices: 157335--157368 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
157325 ATATATTTAT
*
157335 AAAATAATAATTTGATA
1 AAAAT-ATAAATTGATA
157352 AAAATATAAATTGATA
1 AAAATATAAATTGATA
157368 A
1 A
157369 TTTTTAATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 11 0.69
17 5 0.31
ACGTcount: A:0.62, C:0.00, G:0.06, T:0.32
Consensus pattern (16 bp):
AAAATATAAATTGATA
Found at i:162240 original size:12 final size:12
Alignment explanation
Indices: 162223--162247 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
162213 AATAATCATC
162223 ATAATGACAAGT
1 ATAATGACAAGT
162235 ATAATGACAAGT
1 ATAATGACAAGT
162247 A
1 A
162248 AAAGAAAATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.52, C:0.08, G:0.16, T:0.24
Consensus pattern (12 bp):
ATAATGACAAGT
Found at i:163782 original size:10 final size:10
Alignment explanation
Indices: 163767--163791 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
163757 TTTAAAATAT
163767 ATATATATAC
1 ATATATATAC
163777 ATATATATAC
1 ATATATATAC
163787 ATATA
1 ATATA
163792 AATAAAATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.52, C:0.08, G:0.00, T:0.40
Consensus pattern (10 bp):
ATATATATAC
Found at i:164188 original size:20 final size:20
Alignment explanation
Indices: 164163--164213 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
164153 TTTCATATTT
* * *
164163 TTTCTTTTTTTTTTTTTTTC
1 TTTCTTTTTTATCTTCTTTC
* *
164183 TTTCTTCTTCATCTTCTTTC
1 TTTCTTTTTTATCTTCTTTC
164203 TTTCTTTTTTA
1 TTTCTTTTTTA
164214 CTTAACTTTT
Statistics
Matches: 24, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.04, C:0.18, G:0.00, T:0.78
Consensus pattern (20 bp):
TTTCTTTTTTATCTTCTTTC
Found at i:164230 original size:24 final size:24
Alignment explanation
Indices: 164172--164230 Score: 66
Period size: 24 Copynumber: 2.5 Consensus size: 24
164162 TTTTCTTTTT
*
164172 TTTTTTTTTTCTTTCTTCTTCATC
1 TTTTTTTTTTCTTTCTTCTTCAAC
* * *
164196 TTCTTTCTTTCTTTTTTACTT-AAC
1 TTTTTTTTTTCTTTCTT-CTTCAAC
164220 TTTTTTTTTTC
1 TTTTTTTTTTC
164231 AACCTATAAC
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
24 25 0.89
25 3 0.11
ACGTcount: A:0.07, C:0.19, G:0.00, T:0.75
Consensus pattern (24 bp):
TTTTTTTTTTCTTTCTTCTTCAAC
Found at i:165498 original size:32 final size:32
Alignment explanation
Indices: 165449--165762 Score: 513
Period size: 32 Copynumber: 9.8 Consensus size: 32
165439 AAAATGGTGA
* * **
165449 TTTGAAAAGGGTTGCCACTGACTTGCATGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
*
165481 TTTTAAATGGGTTGCCACCGACTTGTGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
*
165513 TTTGAAATGAGTTGCCACCGACTTGTGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
*
165545 TTTGGAATGGGTTGCCACCGACTTGTGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
*
165577 TTTTAAATGGGTTGCCACCGACTTGTGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
165609 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
165641 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
*
165673 TTTGGAATGGGTTGCCACCGACTTGTGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
*
165705 TTTGAAATGAGTTGCCACCGACTTGTGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
* *
165737 TTTGAAATGGG-TGCCACAGAGTTGTG
1 TTTGAAATGGGTTGCCACCGACTTGTG
165763 GATTTAAAAG
Statistics
Matches: 264, Mismatches: 18, Indels: 1
0.93 0.06 0.00
Matches are distributed among these distances:
31 13 0.05
32 251 0.95
ACGTcount: A:0.17, C:0.18, G:0.33, T:0.32
Consensus pattern (32 bp):
TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
Found at i:165779 original size:27 final size:27
Alignment explanation
Indices: 165745--168543 Score: 4349
Period size: 27 Copynumber: 102.1 Consensus size: 27
165735 GCTTTGAAAT
* *
165745 GGGTGCCACAGAGTTGTGGATTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
*
165772 GGATGCCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
165799 GGGTGCCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
* *
165826 GGGTGCCACAGAGTTGTGGTCTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
*
165853 GGGATGCCATGGAGTTGTGGACTTAAAA
1 GGG-TGCCACGGAGTTGTGGACTTAAAA
165881 GGGTGCCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
165908 GGGTGCCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
*
165935 AGGTGCCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
*
165962 AGGTGCCACGGAGTTGTGGACTTTAAAA
1 GGGTGCCACGGAGTTGTGGAC-TTAAAA
*
165990 GGGTGCCACAGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
* *
166017 GAGATGCCACGGAGTTATGGACTTAAAA
1 G-GGTGCCACGGAGTTGTGGACTTAAAA
166045 GGGTGCCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
* *
166072 AGGTGCCACGGAGTTGTGGTCTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
166099 GGGTGCCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
*
166126 GGGTGCCACAGG-GTTGTGGACTAAAAA
1 GGGTGCCAC-GGAGTTGTGGACTTAAAA
*
166153 GGGTGCCACGGAGTTATGGACTTTAAAA
1 GGGTGCCACGGAGTTGTGGAC-TTAAAA
166181 GGGTGCCACGGAGTTGTGGACTTTAAAA
1 GGGTGCCACGGAGTTGTGGAC-TTAAAA
166209 GGGATGCCACGGAGTTGTGGACTTAAAA
1 GGG-TGCCACGGAGTTGTGGACTTAAAA
166237 GGGTGCCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
166264 GGGTGCCACGGAGTTGTGGACTTTAAAA
1 GGGTGCCACGGAGTTGTGGAC-TTAAAA
* *
166292 GGGTGCCACAGAGTTGTGGACTAAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
166319 GGGTGCCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
*
166346 GGGTGCCACGGAGTTGTGGTCTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
166373 GGGATGCCACGGAGTTGTGGACTTAAAA
1 GGG-TGCCACGGAGTTGTGGACTTAAAA
**
166401 GGGTGCCACGGAGTTGTGGACAAAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
166428 GGGTGCCACGGAGTTGTGGACTTTAAAA
1 GGGTGCCACGGAGTTGTGGAC-TTAAAA
*
166456 GGGTGCCACAGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
* *
166483 GAGATGCCACGGAGTTATGGACTTAAAA
1 G-GGTGCCACGGAGTTGTGGACTTAAAA
*
166511 GGGTGCCACGGAGTTGTGCACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
166538 GGGTGCCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
*
166565 AGGTGCCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
**
166592 GAATGCCACGGAGTTGTGGACTTTAAAA
1 GGGTGCCACGGAGTTGTGGAC-TTAAAA
*
166620 GGGTGCCACAGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
* *
166647 GAGATGCCACGGAGTTATGGACTTAAAA
1 G-GGTGCCACGGAGTTGTGGACTTAAAA
166675 GGGTGCCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
*
166702 GGGTGCCACGGAGTTGTGGTCTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
*
166729 GGGTGCCACGGAGTTGTGGACCTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
* *
166756 GGGTGCCACAGAGTTGTGGACTAAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
* *
166783 GGGTGTCACGGAGTTGTGGATTTTAAAA
1 GGGTGCCACGGAGTTGTGGA-CTTAAAA
166811 GGGTGCCACGGAGTTGTGGACTTTAAAA
1 GGGTGCCACGGAGTTGTGGAC-TTAAAA
166839 GGGATGCCACGGAGTTGTGGACTTAAAA
1 GGG-TGCCACGGAGTTGTGGACTTAAAA
166867 GGGTGCCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
*
166894 GGGTGCCACAGAGTTGTGGACTTTAAAA
1 GGGTGCCACGGAGTTGTGGAC-TTAAAA
** *
166922 GGGTGCCACAAAGTTGTGGACTAAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
166949 GGGTGCCACGGAGTTGTGGACTTTAAAA
1 GGGTGCCACGGAGTTGTGGAC-TTAAAA
*
166977 GGGTGCCACAGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
* *
167004 GAGATGCCACGGAGTTATGGACTTAAAA
1 G-GGTGCCACGGAGTTGTGGACTTAAAA
*
167032 GGGTGCCATGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
167059 GGGTGCCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
167086 GGGATGCCACGGAGTTGTGGACTTAAAA
1 GGG-TGCCACGGAGTTGTGGACTTAAAA
167114 GGGTGCCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
*
167141 GGGTGCCACAGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
*
167168 AGGTGCCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
** *
167195 GAATGCCACGGAGTTGTGAACTTTAAAA
1 GGGTGCCACGGAGTTGTGGAC-TTAAAA
*
167223 GGGTGCCACAGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
* * *
167250 GAGATGCCACGGAGTTATGGTCTTAAAA
1 G-GGTGCCACGGAGTTGTGGACTTAAAA
*
167278 GGGTGACACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
* *
167305 GGGTGCCACAGAGTTGTGGACTAAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
167332 GGGTGCCACGGAGTTGTGGACTTTAAAA
1 GGGTGCCACGGAGTTGTGGAC-TTAAAA
167360 GGGTGCCACGGAGTTGTGGACTTTAAAA
1 GGGTGCCACGGAGTTGTGGAC-TTAAAA
*
167388 GGGATGTCACGGAGTTGTGGACTTAAAA
1 GGG-TGCCACGGAGTTGTGGACTTAAAA
*
167416 GGGTGCCACGGAGTTATGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
167443 GGGTGCCACGGAGTTGTGGACTTTAAAA
1 GGGTGCCACGGAGTTGTGGAC-TTAAAA
* *
167471 GGGTGCCACAGAGTTGTGGACTAAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
167498 GGGTGCCACGGAGTTGTGGACTTTAAAA
1 GGGTGCCACGGAGTTGTGGAC-TTAAAA
*
167526 GGGTGCCACAGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
* *
167553 GAGATGCCACGGAGTTATGGACTTAAAA
1 G-GGTGCCACGGAGTTGTGGACTTAAAA
167581 GGGTGCCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
* *
167608 GGGTGCCACGGAGTTGTGGTCTTAAAT
1 GGGTGCCACGGAGTTGTGGACTTAAAA
167635 GGGATGCCACGGAGTTGTGGACTTAAAA
1 GGG-TGCCACGGAGTTGTGGACTTAAAA
* *
167663 GGGTGCCATGGAGTTGTGGACTAAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
167690 GGGTGCCACGGAGTTGTGGACTTTAAAA
1 GGGTGCCACGGAGTTGTGGAC-TTAAAA
*
167718 GGGTGCCACAGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
* *
167745 GAGATGCCACGGAGTTATGGACTTAAAA
1 G-GGTGCCACGGAGTTGTGGACTTAAAA
167773 GGGTGCCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
167800 GGGTGCCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
*
167827 AGGTGCCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
**
167854 GAATGCCACGGAGTTGTGGACTTTAAAA
1 GGGTGCCACGGAGTTGTGGAC-TTAAAA
**
167882 GGGTGCCAAAGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
* *
167909 GAGATGCCACGGAGTTATGGACTTAAAA
1 G-GGTGCCACGGAGTTGTGGACTTAAAA
167937 GGGTGCCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
* *
167964 GGGTGCCACGGAGTTATGGTCTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
*
167991 GGGTGCCACGGAGTTGTGGACTAAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
168018 GGGTGCCACGGAGTTGTGGACTTTAAAA
1 GGGTGCCACGGAGTTGTGGAC-TTAAAA
168046 GGGTGCCACGGAGTTGTGGACTTTAAAA
1 GGGTGCCACGGAGTTGTGGAC-TTAAAA
168074 GGGATGCCACGGAGTTGTGGACTTAAAA
1 GGG-TGCCACGGAGTTGTGGACTTAAAA
*
168102 TGGTGCCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
168129 GGGTGCCACGGAGTTGTGGACTTTAAAA
1 GGGTGCCACGGAGTTGTGGAC-TTAAAA
* *
168157 GGGTGCCACAGAGTTGTGGACTAAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
168184 GGGTGCCACGGAGTTGTGGACTTTAAAA
1 GGGTGCCACGGAGTTGTGGAC-TTAAAA
*
168212 GGGTGCCACAGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
* *
168239 GAGATGCCACGGAGTTATGGACTTAAAA
1 G-GGTGCCACGGAGTTGTGGACTTAAAA
*
168267 GGGTGCCACGGAGTTGTGGACTTAAAC
1 GGGTGCCACGGAGTTGTGGACTTAAAA
*
168294 GGGTGCCACGGAGTTGTGGTCTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
168321 GGGATGCCACGGAGTTGTGGACTTAAAA
1 GGG-TGCCACGGAGTTGTGGACTTAAAA
*
168349 GGGTGCCACGGAGTTGTGGACTAAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
168376 GGGTGCCACGGAGTTGTGGACTTTAAAA
1 GGGTGCCACGGAGTTGTGGAC-TTAAAA
**
168404 GGGTGCCACATAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
* *
168431 GAGATGCCACGGAGTTATGGACTTAAAA
1 G-GGTGCCACGGAGTTGTGGACTTAAAA
*
168459 GGGTGTCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
*
168486 GGGTGCCACGGAGTTGTGGTCTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
168513 GGGATGCCACGGAGTTGTGGACTTAAAA
1 GGG-TGCCACGGAGTTGTGGACTTAAAA
168541 GGG
1 GGG
168544 ACTTTAAAAG
Statistics
Matches: 2547, Mismatches: 184, Indels: 81
0.91 0.07 0.03
Matches are distributed among these distances:
26 2 0.00
27 1559 0.61
28 915 0.36
29 71 0.03
ACGTcount: A:0.28, C:0.14, G:0.34, T:0.23
Consensus pattern (27 bp):
GGGTGCCACGGAGTTGTGGACTTAAAA
Found at i:165881 original size:82 final size:81
Alignment explanation
Indices: 165745--168543 Score: 4349
Period size: 82 Copynumber: 34.0 Consensus size: 81
165735 GCTTTGAAAT
* * *
165745 GGGTGCCACAGAGTTGTGGATTTAAAAGGATGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGG
1 GGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGG
165810 AGTTGTGGACTTAAAA
66 AGTTGTGGACTTAAAA
* * *
165826 GGGTGCCACAGAGTTGTGGTCTTAAAAGGGATGCCATGGAGTTGTGGACTTAAAAGGGTGCCACG
1 GGGTGCCACGGAGTTGTGGACTTAAAAGGG-TGCCACGGAGTTGTGGACTTAAAAGGGTGCCACG
165891 GAGTTGTGGACTTAAAA
65 GAGTTGTGGACTTAAAA
* *
165908 GGGTGCCACGGAGTTGTGGACTTAAAAAGGTGCCACGGAGTTGTGGACTTAAAAAGGTGCCACGG
1 GGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGG
165973 AGTTGTGGACTTTAAAA
66 AGTTGTGGAC-TTAAAA
* * *
165990 GGGTGCCACAGAGTTGTGGACTTAAAAGAGATGCCACGGAGTTATGGACTTAAAAGGGTGCCACG
1 GGGTGCCACGGAGTTGTGGACTTAAAAG-GGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACG
166055 GAGTTGTGGACTTAAAA
65 GAGTTGTGGACTTAAAA
* *
166072 AGGTGCCACGGAGTTGTGGTCTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACAG
1 GGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCAC-G
*
166137 G-GTTGTGGACTAAAAA
65 GAGTTGTGGACTTAAAA
*
166153 GGGTGCCACGGAGTTATGGACTTTAAAAGGGTGCCACGGAGTTGTGGACTTTAAAAGGGATGCCA
1 GGGTGCCACGGAGTTGTGGAC-TTAAAAGGGTGCCACGGAGTTGTGGAC-TTAAAAGGG-TGCCA
166218 CGGAGTTGTGGACTTAAAA
63 CGGAGTTGTGGACTTAAAA
*
166237 GGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTTAAAAGGGTGCCACA
1 GGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGAC-TTAAAAGGGTGCCACG
*
166302 GAGTTGTGGACTAAAAA
65 GAGTTGTGGACTTAAAA
*
166319 GGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGTCTTAAAAGGGATGCCACG
1 GGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGG-TGCCACG
166384 GAGTTGTGGACTTAAAA
65 GAGTTGTGGACTTAAAA
** *
166401 GGGTGCCACGGAGTTGTGGACAAAAAAGGGTGCCACGGAGTTGTGGACTTTAAAAGGGTGCCACA
1 GGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGAC-TTAAAAGGGTGCCACG
166466 GAGTTGTGGACTTAAAA
65 GAGTTGTGGACTTAAAA
* * *
166483 GAGATGCCACGGAGTTATGGACTTAAAAGGGTGCCACGGAGTTGTGCACTTAAAAGGGTGCCACG
1 G-GGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACG
166548 GAGTTGTGGACTTAAAA
65 GAGTTGTGGACTTAAAA
* ** *
166565 AGGTGCCACGGAGTTGTGGACTTAAAAGAATGCCACGGAGTTGTGGACTTTAAAAGGGTGCCACA
1 GGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGAC-TTAAAAGGGTGCCACG
166630 GAGTTGTGGACTTAAAA
65 GAGTTGTGGACTTAAAA
* *
166647 GAGATGCCACGGAGTTATGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACG
1 G-GGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACG
*
166712 GAGTTGTGGTCTTAAAA
65 GAGTTGTGGACTTAAAA
* * * *
166729 GGGTGCCACGGAGTTGTGGACCTAAAAGGGTGCCACAGAGTTGTGGACTAAAAAGGGTGTCACGG
1 GGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGG
*
166794 AGTTGTGGATTTTAAAA
66 AGTTGTGGA-CTTAAAA
166811 GGGTGCCACGGAGTTGTGGACTTTAAAAGGGATGCCACGGAGTTGTGGACTTAAAAGGGTGCCAC
1 GGGTGCCACGGAGTTGTGGAC-TTAAAAGGG-TGCCACGGAGTTGTGGACTTAAAAGGGTGCCAC
166876 GGAGTTGTGGACTTAAAA
64 GGAGTTGTGGACTTAAAA
* ** *
166894 GGGTGCCACAGAGTTGTGGACTTTAAAAGGGTGCCACAAAGTTGTGGACTAAAAAGGGTGCCACG
1 GGGTGCCACGGAGTTGTGGAC-TTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACG
166959 GAGTTGTGGACTTTAAAA
65 GAGTTGTGGAC-TTAAAA
* * * *
166977 GGGTGCCACAGAGTTGTGGACTTAAAAGAGATGCCACGGAGTTATGGACTTAAAAGGGTGCCATG
1 GGGTGCCACGGAGTTGTGGACTTAAAAG-GGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACG
167042 GAGTTGTGGACTTAAAA
65 GAGTTGTGGACTTAAAA
167059 GGGTGCCACGGAGTTGTGGACTTAAAAGGGATGCCACGGAGTTGTGGACTTAAAAGGGTGCCACG
1 GGGTGCCACGGAGTTGTGGACTTAAAAGGG-TGCCACGGAGTTGTGGACTTAAAAGGGTGCCACG
167124 GAGTTGTGGACTTAAAA
65 GAGTTGTGGACTTAAAA
* * **
167141 GGGTGCCACAGAGTTGTGGACTTAAAAAGGTGCCACGGAGTTGTGGACTTAAAAGAATGCCACGG
1 GGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGG
*
167206 AGTTGTGAACTTTAAAA
66 AGTTGTGGAC-TTAAAA
* * * * *
167223 GGGTGCCACAGAGTTGTGGACTTAAAAGAGATGCCACGGAGTTATGGTCTTAAAAGGGTGACACG
1 GGGTGCCACGGAGTTGTGGACTTAAAAG-GGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACG
167288 GAGTTGTGGACTTAAAA
65 GAGTTGTGGACTTAAAA
* *
167305 GGGTGCCACAGAGTTGTGGACTAAAAAGGGTGCCACGGAGTTGTGGACTTTAAAAGGGTGCCACG
1 GGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGAC-TTAAAAGGGTGCCACG
167370 GAGTTGTGGACTTTAAAA
65 GAGTTGTGGAC-TTAAAA
* *
167388 GGGATGTCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTATGGACTTAAAAGGGTGCCACG
1 GGG-TGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACG
167453 GAGTTGTGGACTTTAAAA
65 GAGTTGTGGAC-TTAAAA
* * *
167471 GGGTGCCACAGAGTTGTGGACTAAAAAGGGTGCCACGGAGTTGTGGACTTTAAAAGGGTGCCACA
1 GGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGAC-TTAAAAGGGTGCCACG
167536 GAGTTGTGGACTTAAAA
65 GAGTTGTGGACTTAAAA
* *
167553 GAGATGCCACGGAGTTATGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACG
1 G-GGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACG
* *
167618 GAGTTGTGGTCTTAAAT
65 GAGTTGTGGACTTAAAA
* *
167635 GGGATGCCACGGAGTTGTGGACTTAAAAGGGTGCCATGGAGTTGTGGACTAAAAAGGGTGCCACG
1 GGG-TGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACG
167700 GAGTTGTGGACTTTAAAA
65 GAGTTGTGGAC-TTAAAA
* * *
167718 GGGTGCCACAGAGTTGTGGACTTAAAAGAGATGCCACGGAGTTATGGACTTAAAAGGGTGCCACG
1 GGGTGCCACGGAGTTGTGGACTTAAAAG-GGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACG
167783 GAGTTGTGGACTTAAAA
65 GAGTTGTGGACTTAAAA
* **
167800 GGGTGCCACGGAGTTGTGGACTTAAAAAGGTGCCACGGAGTTGTGGACTTAAAAGAATGCCACGG
1 GGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGG
167865 AGTTGTGGACTTTAAAA
66 AGTTGTGGAC-TTAAAA
** * *
167882 GGGTGCCAAAGAGTTGTGGACTTAAAAGAGATGCCACGGAGTTATGGACTTAAAAGGGTGCCACG
1 GGGTGCCACGGAGTTGTGGACTTAAAAG-GGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACG
167947 GAGTTGTGGACTTAAAA
65 GAGTTGTGGACTTAAAA
* * *
167964 GGGTGCCACGGAGTTATGGTCTTAAAAGGGTGCCACGGAGTTGTGGACTAAAAAGGGTGCCACGG
1 GGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGG
168029 AGTTGTGGACTTTAAAA
66 AGTTGTGGAC-TTAAAA
*
168046 GGGTGCCACGGAGTTGTGGACTTTAAAAGGGATGCCACGGAGTTGTGGACTTAAAATGGTGCCAC
1 GGGTGCCACGGAGTTGTGGAC-TTAAAAGGG-TGCCACGGAGTTGTGGACTTAAAAGGGTGCCAC
168111 GGAGTTGTGGACTTAAAA
64 GGAGTTGTGGACTTAAAA
* *
168129 GGGTGCCACGGAGTTGTGGACTTTAAAAGGGTGCCACAGAGTTGTGGACTAAAAAGGGTGCCACG
1 GGGTGCCACGGAGTTGTGGAC-TTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACG
168194 GAGTTGTGGACTTTAAAA
65 GAGTTGTGGAC-TTAAAA
* * *
168212 GGGTGCCACAGAGTTGTGGACTTAAAAGAGATGCCACGGAGTTATGGACTTAAAAGGGTGCCACG
1 GGGTGCCACGGAGTTGTGGACTTAAAAG-GGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACG
*
168277 GAGTTGTGGACTTAAAC
65 GAGTTGTGGACTTAAAA
*
168294 GGGTGCCACGGAGTTGTGGTCTTAAAAGGGATGCCACGGAGTTGTGGACTTAAAAGGGTGCCACG
1 GGGTGCCACGGAGTTGTGGACTTAAAAGGG-TGCCACGGAGTTGTGGACTTAAAAGGGTGCCACG
*
168359 GAGTTGTGGACTAAAAA
65 GAGTTGTGGACTTAAAA
** *
168376 GGGTGCCACGGAGTTGTGGACTTTAAAAGGGTGCCACATAGTTGTGGACTTAAAAGAGATGCCAC
1 GGGTGCCACGGAGTTGTGGAC-TTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAG-GGTGCCAC
*
168441 GGAGTTATGGACTTAAAA
64 GGAGTTGTGGACTTAAAA
* *
168459 GGGTGTCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGTCTTAAAAGGGATGCCACG
1 GGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGG-TGCCACG
168524 GAGTTGTGGACTTAAAA
65 GAGTTGTGGACTTAAAA
168541 GGG
1 GGG
168544 ACTTTAAAAG
Statistics
Matches: 2501, Mismatches: 177, Indels: 79
0.91 0.06 0.03
Matches are distributed among these distances:
81 402 0.16
82 1220 0.49
83 714 0.29
84 165 0.07
ACGTcount: A:0.28, C:0.14, G:0.34, T:0.23
Consensus pattern (81 bp):
GGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGG
AGTTGTGGACTTAAAA
Found at i:165882 original size:55 final size:54
Alignment explanation
Indices: 165745--168543 Score: 4349
Period size: 55 Copynumber: 51.1 Consensus size: 54
165735 GCTTTGAAAT
* * *
165745 GGGTGCCACAGAGTTGTGGATTTAAAAGGATGCCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAA
* *
165799 GGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACAGAGTTGTGGTCTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAA
*
165853 GGGATGCCATGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAA
1 GGG-TGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAA
*
165908 GGGTGCCACGGAGTTGTGGACTTAAAAAGGTGCCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAA
* *
165962 AGGTGCCACGGAGTTGTGGACTTTAAAAGGGTGCCACAGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGAC-TTAAAAGGGTGCCACGGAGTTGTGGACTTAAAA
* *
166017 GAGATGCCACGGAGTTATGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAA
1 G-GGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAA
* *
166072 AGGTGCCACGGAGTTGTGGTCTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAA
* *
166126 GGGTGCCACAGG-GTTGTGGACTAAAAAGGGTGCCACGGAGTTATGGACTTTAAAA
1 GGGTGCCAC-GGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGAC-TTAAAA
166181 GGGTGCCACGGAGTTGTGGACTTTAAAAGGGATGCCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGAC-TTAAAAGGG-TGCCACGGAGTTGTGGACTTAAAA
166237 GGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGAC-TTAAAA
* *
166292 GGGTGCCACAGAGTTGTGGACTAAAAAGGGTGCCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAA
*
166346 GGGTGCCACGGAGTTGTGGTCTTAAAAGGGATGCCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAAGGG-TGCCACGGAGTTGTGGACTTAAAA
**
166401 GGGTGCCACGGAGTTGTGGACAAAAAAGGGTGCCACGGAGTTGTGGACTTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGAC-TTAAAA
* * *
166456 GGGTGCCACAGAGTTGTGGACTTAAAAGAGATGCCACGGAGTTATGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAAG-GGTGCCACGGAGTTGTGGACTTAAAA
*
166511 GGGTGCCACGGAGTTGTGCACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAA
* **
166565 AGGTGCCACGGAGTTGTGGACTTAAAAGAATGCCACGGAGTTGTGGACTTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGAC-TTAAAA
* * *
166620 GGGTGCCACAGAGTTGTGGACTTAAAAGAGATGCCACGGAGTTATGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAAG-GGTGCCACGGAGTTGTGGACTTAAAA
*
166675 GGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGTCTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAA
* * *
166729 GGGTGCCACGGAGTTGTGGACCTAAAAGGGTGCCACAGAGTTGTGGACTAAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAA
* *
166783 GGGTGTCACGGAGTTGTGGATTTTAAAAGGGTGCCACGGAGTTGTGGACTTTAAAA
1 GGGTGCCACGGAGTTGTGGA-CTTAAAAGGGTGCCACGGAGTTGTGGAC-TTAAAA
166839 GGGATGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAA
1 GGG-TGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAA
* ** *
166894 GGGTGCCACAGAGTTGTGGACTTTAAAAGGGTGCCACAAAGTTGTGGACTAAAAA
1 GGGTGCCACGGAGTTGTGGAC-TTAAAAGGGTGCCACGGAGTTGTGGACTTAAAA
*
166949 GGGTGCCACGGAGTTGTGGACTTTAAAAGGGTGCCACAGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGAC-TTAAAAGGGTGCCACGGAGTTGTGGACTTAAAA
* * *
167004 GAGATGCCACGGAGTTATGGACTTAAAAGGGTGCCATGGAGTTGTGGACTTAAAA
1 G-GGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAA
167059 GGGTGCCACGGAGTTGTGGACTTAAAAGGGATGCCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAAGGG-TGCCACGGAGTTGTGGACTTAAAA
*
167114 GGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACAGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAA
* ** *
167168 AGGTGCCACGGAGTTGTGGACTTAAAAGAATGCCACGGAGTTGTGAACTTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGAC-TTAAAA
* * * *
167223 GGGTGCCACAGAGTTGTGGACTTAAAAGAGATGCCACGGAGTTATGGTCTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAAG-GGTGCCACGGAGTTGTGGACTTAAAA
* * *
167278 GGGTGACACGGAGTTGTGGACTTAAAAGGGTGCCACAGAGTTGTGGACTAAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAA
167332 GGGTGCCACGGAGTTGTGGACTTTAAAAGGGTGCCACGGAGTTGTGGACTTTAAAA
1 GGGTGCCACGGAGTTGTGGAC-TTAAAAGGGTGCCACGGAGTTGTGGAC-TTAAAA
* *
167388 GGGATGTCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTATGGACTTAAAA
1 GGG-TGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAA
* *
167443 GGGTGCCACGGAGTTGTGGACTTTAAAAGGGTGCCACAGAGTTGTGGACTAAAAA
1 GGGTGCCACGGAGTTGTGGAC-TTAAAAGGGTGCCACGGAGTTGTGGACTTAAAA
*
167498 GGGTGCCACGGAGTTGTGGACTTTAAAAGGGTGCCACAGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGAC-TTAAAAGGGTGCCACGGAGTTGTGGACTTAAAA
* *
167553 GAGATGCCACGGAGTTATGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAA
1 G-GGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAA
* *
167608 GGGTGCCACGGAGTTGTGGTCTTAAATGGGATGCCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAAGGG-TGCCACGGAGTTGTGGACTTAAAA
* *
167663 GGGTGCCATGGAGTTGTGGACTAAAAAGGGTGCCACGGAGTTGTGGACTTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGAC-TTAAAA
* * *
167718 GGGTGCCACAGAGTTGTGGACTTAAAAGAGATGCCACGGAGTTATGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAAG-GGTGCCACGGAGTTGTGGACTTAAAA
167773 GGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAA
* **
167827 AGGTGCCACGGAGTTGTGGACTTAAAAGAATGCCACGGAGTTGTGGACTTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGAC-TTAAAA
** * *
167882 GGGTGCCAAAGAGTTGTGGACTTAAAAGAGATGCCACGGAGTTATGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAAG-GGTGCCACGGAGTTGTGGACTTAAAA
* *
167937 GGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTATGGTCTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAA
*
167991 GGGTGCCACGGAGTTGTGGACTAAAAAGGGTGCCACGGAGTTGTGGACTTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGAC-TTAAAA
168046 GGGTGCCACGGAGTTGTGGACTTTAAAAGGGATGCCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGAC-TTAAAAGGG-TGCCACGGAGTTGTGGACTTAAAA
*
168102 TGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGAC-TTAAAA
* *
168157 GGGTGCCACAGAGTTGTGGACTAAAAAGGGTGCCACGGAGTTGTGGACTTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGAC-TTAAAA
* * *
168212 GGGTGCCACAGAGTTGTGGACTTAAAAGAGATGCCACGGAGTTATGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAAG-GGTGCCACGGAGTTGTGGACTTAAAA
* *
168267 GGGTGCCACGGAGTTGTGGACTTAAACGGGTGCCACGGAGTTGTGGTCTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAA
*
168321 GGGATGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTAAAAA
1 GGG-TGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAA
**
168376 GGGTGCCACGGAGTTGTGGACTTTAAAAGGGTGCCACATAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGAC-TTAAAAGGGTGCCACGGAGTTGTGGACTTAAAA
* * *
168431 GAGATGCCACGGAGTTATGGACTTAAAAGGGTGTCACGGAGTTGTGGACTTAAAA
1 G-GGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAA
*
168486 GGGTGCCACGGAGTTGTGGTCTTAAAAGGGATGCCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAAGGG-TGCCACGGAGTTGTGGACTTAAAA
168541 GGG
1 GGG
168544 ACTTTAAAAG
Statistics
Matches: 2532, Mismatches: 172, Indels: 81
0.91 0.06 0.03
Matches are distributed among these distances:
54 880 0.35
55 1268 0.50
56 316 0.12
57 68 0.03
ACGTcount: A:0.28, C:0.14, G:0.34, T:0.23
Consensus pattern (54 bp):
GGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAA
Done.