Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold301
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 562684
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
File 2 of 4
Found at i:178828 original size:13 final size:13
Alignment explanation
Indices: 178810--178835 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
178800 CATTTTTCTG
178810 TGTATCGATACAT
1 TGTATCGATACAT
178823 TGTATCGATACAT
1 TGTATCGATACAT
178836 GGATCTTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:178832 original size:33 final size:33
Alignment explanation
Indices: 178790--178856 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
178780 GCCAAGGAAA
***
178790 TGTATCGATACATTTTTCTGTGTATCGATACAT
1 TGTATCGATACATGGATCTGTGTATCGATACAT
*
178823 TGTATCGATACATGGATCTTTGTATCGATACAT
1 TGTATCGATACATGGATCTGTGTATCGATACAT
178856 T
1 T
178857 TGGAAATTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.25, C:0.15, G:0.16, T:0.43
Consensus pattern (33 bp):
TGTATCGATACATGGATCTGTGTATCGATACAT
Found at i:181198 original size:51 final size:51
Alignment explanation
Indices: 181138--181255 Score: 140
Period size: 51 Copynumber: 2.4 Consensus size: 51
181128 CAATTCTCCG
181138 TAATCGGGGATA-TCCCAACTCCGATTTCATTT-TCAAAACA-CTAATTTTCTA
1 TAATCGGGGATACT-CCAACTCCGATTTCATTTCT-AAAACATC-AATTTTCTA
* *
181189 TAATCGGGGATACTTCAACTCCGATTTTATTTCTAAAACATCAA-TTT-T-
1 TAATCGGGGATACTCCAACTCCGATTTCATTTCTAAAACATCAATTTTCTA
*
181237 TCATCGGGGATACTCCAAC
1 TAATCGGGGATACTCCAAC
181256 CCCGTTAATC
Statistics
Matches: 60, Mismatches: 4, Indels: 9
0.82 0.05 0.12
Matches are distributed among these distances:
48 17 0.28
49 1 0.02
50 3 0.05
51 36 0.60
52 3 0.05
ACGTcount: A:0.31, C:0.23, G:0.12, T:0.35
Consensus pattern (51 bp):
TAATCGGGGATACTCCAACTCCGATTTCATTTCTAAAACATCAATTTTCTA
Found at i:181309 original size:28 final size:27
Alignment explanation
Indices: 181237--181313 Score: 111
Period size: 27 Copynumber: 2.8 Consensus size: 27
181227 CATCAATTTT
181237 TCATCGGGGATACTCCAACCCCGTTAA
1 TCATCGGGGATACTCCAACCCCGTTAA
181264 TCATCGGGGATACTCCAACCCCGTT-A
1 TCATCGGGGATACTCCAACCCCGTTAA
**
181290 TTTTCGAGGGGATACTCCAACCCC
1 TCATC--GGGGATACTCCAACCCC
181314 CGGCTTTATT
Statistics
Matches: 46, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
26 4 0.09
27 25 0.54
28 17 0.37
ACGTcount: A:0.23, C:0.34, G:0.19, T:0.23
Consensus pattern (27 bp):
TCATCGGGGATACTCCAACCCCGTTAA
Found at i:181441 original size:51 final size:52
Alignment explanation
Indices: 181381--181545 Score: 158
Period size: 51 Copynumber: 3.2 Consensus size: 52
181371 CTCCGAGGGA
* * *
181381 ATACTCCAACCCTGGTTTTATTTCCAAATCATCGA-TTTCCCACAATCGGGG
1 ATACTCCAACCCTGGTTTTATTTCCAAAACACCAATTTTCCCACAATCGGGG
* * * ***
181432 ATACTCCAACCCCGG-CTTATTTTCAAAACACCAATTTTCCTTTAATCGGGG
1 ATACTCCAACCCTGGTTTTATTTCCAAAACACCAATTTTCCCACAATCGGGG
* * * * *
181483 ATACTCCAA-CTTCGATTTTATTTCCAAAAACACCAATTTT-TCACAATTGAGG
1 ATACTCCAACCCT-GGTTTTATTTCC-AAAACACCAATTTTCCCACAATCGGGG
181535 ATACTCCAACC
1 ATACTCCAACC
181546 TCGTTATTTC
Statistics
Matches: 89, Mismatches: 20, Indels: 8
0.76 0.17 0.07
Matches are distributed among these distances:
50 15 0.17
51 37 0.42
52 22 0.25
53 15 0.17
ACGTcount: A:0.30, C:0.28, G:0.10, T:0.32
Consensus pattern (52 bp):
ATACTCCAACCCTGGTTTTATTTCCAAAACACCAATTTTCCCACAATCGGGG
Found at i:181732 original size:290 final size:282
Alignment explanation
Indices: 181166--181697 Score: 658
Period size: 289 Copynumber: 1.9 Consensus size: 282
181156 CTCCGATTTC
* * * *
181166 ATTTTCAAAACACTAATTTTCTATAATCGGGGATACTTCAACTCCGATTTTATTTCTAAAACATC
1 ATTTTCAAAACACCAATTTTCTATAATCGGGGATACTCCAACTCCGATTTTATTTCAAAAACACC
* ** *
181231 AATTTTTCATCGGGGATACTCCAACCCCGTTAATCATCGGGGATACTCCAACCCCGTTATTTTCG
66 AATTTTTCATCGAGGATACTCCAACCCCGTTAATCATCGGGGATACTCCAACCCCGTTACCTCCG
* *
181296 AGGGGATACTCCAACCCCCGGCTTTATTTCTAAAATATTAATTTCTCATAATCGGGGATACTCCA
131 AGGGGATACTCCAACCCCCGGCTTTATTTCT-AAATATCAATTTCTCACAATCGGGGATACTCCA
* * * * * **
181361 ACCCCGTTATCTCCGAGGGAATACTCCAACCCTGGTTTTATTTCCAAATCATCGATTTCCCACAA
195 ACCCCGTCATCTCCAAGGGAACACTCCAACCCTCGTTTTATCTCCAAATCATAAATTT-CCACAA
*
181426 TCGGGGATACTCCAACCCCGGCTT
259 TCGGAGATACTCCAACCCCGGCTT
* *
181450 ATTTTCAAAACACCAATTTTCCTTTAATCGGGGATACTCCAACTTCGATTTTATTTCCAAAAACA
1 ATTTTCAAAACACCAATTTT-CTATAATCGGGGATACTCCAACTCCGATTTTATTT-CAAAAACA
* * *
181515 CCAATTTTTCACAATTGAGGATACTCCAACCTCGTTATTTCATCGGGGATACTCCAACCCCGTTA
64 CCAATTTTT--C-ATCGAGGATACTCCAACCCCGTTA-ATCATCGGGGATACTCCAACCCCGTTA
* * *
181580 CCTCCGAGGGGATACTCCAA-CCCCGACGTTTTTTTTCT-AATCATCGATTTCTCACAATC-GGG
125 CCTCCGAGGGGATACTCCAACCCCCG--GCTTTATTTCTAAAT-ATCAATTTCTCACAATCGGGG
* * * *
181642 ATACTCCAGCCCCGTCATTTTCAAGGGGACACTCCAACCC-CGTTATTATCTCCAAA
187 ATACTCCAACCCCGTCATCTCCAAGGGAACACTCCAACCCTCGTT-TTATCTCCAAA
181698 ATATTAAATT
Statistics
Matches: 211, Mismatches: 27, Indels: 15
0.83 0.11 0.06
Matches are distributed among these distances:
284 19 0.09
285 32 0.15
286 15 0.07
288 4 0.02
289 75 0.36
290 57 0.27
291 9 0.04
ACGTcount: A:0.27, C:0.28, G:0.14, T:0.31
Consensus pattern (282 bp):
ATTTTCAAAACACCAATTTTCTATAATCGGGGATACTCCAACTCCGATTTTATTTCAAAAACACC
AATTTTTCATCGAGGATACTCCAACCCCGTTAATCATCGGGGATACTCCAACCCCGTTACCTCCG
AGGGGATACTCCAACCCCCGGCTTTATTTCTAAATATCAATTTCTCACAATCGGGGATACTCCAA
CCCCGTCATCTCCAAGGGAACACTCCAACCCTCGTTTTATCTCCAAATCATAAATTTCCACAATC
GGAGATACTCCAACCCCGGCTT
Found at i:188745 original size:13 final size:13
Alignment explanation
Indices: 188727--188752 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
188717 CAATTTTTTG
188727 TGTATCGATACAT
1 TGTATCGATACAT
188740 TGTATCGATACAT
1 TGTATCGATACAT
188753 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:188817 original size:21 final size:21
Alignment explanation
Indices: 188791--188866 Score: 100
Period size: 21 Copynumber: 3.7 Consensus size: 21
188781 CTGCCAAGAA
*
188791 ATGTATCGATACATCTTTTTT
1 ATGTATCGATACATCTTTTTC
****
188812 ATGTATCGATACAT-TGCAAC
1 ATGTATCGATACATCTTTTTC
188832 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACATCTTTTTC
188853 ATGTATCGATACAT
1 ATGTATCGATACAT
188867 TGCAACATGT
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
20 15 0.33
21 30 0.67
ACGTcount: A:0.29, C:0.17, G:0.12, T:0.42
Consensus pattern (21 bp):
ATGTATCGATACATCTTTTTC
Found at i:188837 original size:20 final size:20
Alignment explanation
Indices: 188812--188884 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
188802 CATCTTTTTT
188812 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
****
188832 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACAT-TGCAAC
188853 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
188873 ATGTATCGATAC
1 ATGTATCGATAC
188885 TTTGAATTGT
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.36
Consensus pattern (20 bp):
ATGTATCGATACATTGCAAC
Found at i:188848 original size:41 final size:41
Alignment explanation
Indices: 188791--188884 Score: 179
Period size: 41 Copynumber: 2.3 Consensus size: 41
188781 CTGCCAAGAA
*
188791 ATGTATCGATACATCTTTTTTATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
188832 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
188873 ATGTATCGATAC
1 ATGTATCGATAC
188885 TTTGAATTGT
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 52 1.00
ACGTcount: A:0.30, C:0.18, G:0.13, T:0.39
Consensus pattern (41 bp):
ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
Found at i:189508 original size:33 final size:33
Alignment explanation
Indices: 189469--189537 Score: 138
Period size: 33 Copynumber: 2.1 Consensus size: 33
189459 TAATAAGGTA
189469 ATTCACGCATTCTCTCCTTTGTCTCCCCCGTTT
1 ATTCACGCATTCTCTCCTTTGTCTCCCCCGTTT
189502 ATTCACGCATTCTCTCCTTTGTCTCCCCCGTTT
1 ATTCACGCATTCTCTCCTTTGTCTCCCCCGTTT
189535 ATT
1 ATT
189538 AAAAAATCTC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 36 1.00
ACGTcount: A:0.10, C:0.38, G:0.09, T:0.43
Consensus pattern (33 bp):
ATTCACGCATTCTCTCCTTTGTCTCCCCCGTTT
Found at i:191378 original size:13 final size:13
Alignment explanation
Indices: 191360--191398 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
191350 ATAATCACCC
*
191360 TGTATCGATACAG
1 TGTATCGATACAA
191373 TGTATCGATACAA
1 TGTATCGATACAA
191386 TGTATCGATACAA
1 TGTATCGATACAA
191399 AGAAAAATGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:191409 original size:20 final size:20
Alignment explanation
Indices: 191384--191462 Score: 61
Period size: 20 Copynumber: 3.7 Consensus size: 20
191374 GTATCGATAC
191384 AATGTATCGATACAAAGAAA
1 AATGTATCGATACAAAGAAA
* *
191404 AATGTATTGATACATAGAATTTCCA
1 AATGTATCGATACAAAGAA-----A
*
191429 GATGTATCGATACACAA-AAA
1 AATGTATCGATACA-AAGAAA
*
191449 CATGTATCGATACA
1 AATGTATCGATACA
191463 TTTTGGACAT
Statistics
Matches: 47, Mismatches: 6, Indels: 12
0.72 0.09 0.18
Matches are distributed among these distances:
20 31 0.66
25 15 0.32
26 1 0.02
ACGTcount: A:0.46, C:0.14, G:0.14, T:0.27
Consensus pattern (20 bp):
AATGTATCGATACAAAGAAA
Found at i:193497 original size:15 final size:15
Alignment explanation
Indices: 193477--193507 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
193467 ATTTCGTTTG
*
193477 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
193492 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
193507 G
1 G
193508 GACATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Found at i:197587 original size:13 final size:13
Alignment explanation
Indices: 197569--197594 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
197559 CAATTTTTTG
197569 TGTATCGATACAT
1 TGTATCGATACAT
197582 TGTATCGATACAT
1 TGTATCGATACAT
197595 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:197659 original size:21 final size:21
Alignment explanation
Indices: 197633--197708 Score: 100
Period size: 21 Copynumber: 3.7 Consensus size: 21
197623 CTGCCAAGAA
*
197633 ATGTATCGATACATCTTTTTT
1 ATGTATCGATACATCTTTTTC
****
197654 ATGTATCGATACAT-TGCAAC
1 ATGTATCGATACATCTTTTTC
197674 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACATCTTTTTC
197695 ATGTATCGATACAT
1 ATGTATCGATACAT
197709 TGCAACATGT
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
20 15 0.33
21 30 0.67
ACGTcount: A:0.29, C:0.17, G:0.12, T:0.42
Consensus pattern (21 bp):
ATGTATCGATACATCTTTTTC
Found at i:197679 original size:20 final size:20
Alignment explanation
Indices: 197654--197726 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
197644 CATCTTTTTT
197654 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
****
197674 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACAT-TGCAAC
197695 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
197715 ATGTATCGATAC
1 ATGTATCGATAC
197727 TTTGAATTGT
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.36
Consensus pattern (20 bp):
ATGTATCGATACATTGCAAC
Found at i:197690 original size:41 final size:41
Alignment explanation
Indices: 197633--197726 Score: 179
Period size: 41 Copynumber: 2.3 Consensus size: 41
197623 CTGCCAAGAA
*
197633 ATGTATCGATACATCTTTTTTATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
197674 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
197715 ATGTATCGATAC
1 ATGTATCGATAC
197727 TTTGAATTGT
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 52 1.00
ACGTcount: A:0.30, C:0.18, G:0.13, T:0.39
Consensus pattern (41 bp):
ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
Found at i:204118 original size:10 final size:10
Alignment explanation
Indices: 204103--204174 Score: 67
Period size: 10 Copynumber: 7.2 Consensus size: 10
204093 TTCTCTTCAA
204103 AAAAAAAAAG
1 AAAAAAAAAG
204113 AAAAAAAAAG
1 AAAAAAAAAG
204123 AAAAAAACAA-
1 AAAAAAA-AAG
*
204133 AACAAAAAA-
1 AAAAAAAAAG
* *
204142 CAAAACAAAG
1 AAAAAAAAAG
* *
204152 AAAAAGAGAG
1 AAAAAAAAAG
204162 AAAAGAAAAAG
1 AAAA-AAAAAG
204173 AA
1 AA
204175 CCTGCTTAAG
Statistics
Matches: 50, Mismatches: 9, Indels: 5
0.78 0.14 0.08
Matches are distributed among these distances:
9 8 0.16
10 34 0.68
11 8 0.16
ACGTcount: A:0.83, C:0.06, G:0.11, T:0.00
Consensus pattern (10 bp):
AAAAAAAAAG
Found at i:205248 original size:55 final size:56
Alignment explanation
Indices: 205164--205854 Score: 649
Period size: 55 Copynumber: 11.9 Consensus size: 56
205154 GATGCTTTTT
*
205164 CCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCGCAAAGAGCAGGA-CC
1 CCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGAGCC
* *
205219 CCTTTCGAAGCCCACACAAGTTGGTGGCA-CTTCCCAGTCCTCAAAGAGCAGGACGCCTTC
1 CCTTTCAAAGCCCACACAAGTTGGTGGCACCTT-TCAGTCCTCAAAGAGCAGGA-G-C--C
* * * ** * *
205279 TCCTTTTAAAGCCCATACAAGTTCGTGGCATTTTTCAGTCTTCAAAGAGCGGGATGCC
1 -CCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGA-GCC
*
205337 TTTTCCTTT-AAAGCCCACACAAGTTGGTGGCACC-TTCAGTCCTCAAAGAGCGGGATGCC
1 ----CCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGA-GCC
* * * *
205396 TTTTCTTTTAAAGCCCACCCAAGTTGGTGGCACC-TTCAGTCCTCAAAGAGCAGGATGCTTTTT
1 ---CCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGA-GC----C
* *
205459 CTTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCCCAAAGAGCAGGA-CC
1 CCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGAGCC
*
205514 CCTTTCAAAAAGCCCACACAAGTTGGTGGCA-CTTCCAGTCCTCAAAGAGCAGGATGCCTTC
1 CCTTTC--AAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGA-G-C--C
* *
205575 TCCTCTT-AAAGCCCACACAAGTTGGTGGCA-CTTCCTAGTCCTCAAAGAGCAGGA-CG
1 -CCT-TTCAAAGCCCACACAAGTTGGTGGCACCTTTC-AGTCCTCAAAGAGCAGGAGCC
* * *
205631 CCTTTTAAAGCCCACACAAGTTGGTGGCA-CTTCCCAATCCTCAAAGAGCAGGACGCCTTC
1 CCTTTCAAAGCCCACACAAGTTGGTGGCACCTT-TCAGTCCTCAAAGAGCAGGA-G-C--C
* *
205691 TCCTTTTAAAGCCCACACAAGTTGGTGGCA-CTTCCTAGTCCTCAAAGAGCAGGATG--
1 -CCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTC-AGTCCTCAAAGAGCAGGA-GCC
* * *
205747 CCTTTTAAAGCCCACACAAGTTGATGGCACCTTTCAGTCCTCAAAGAGCAGGA-CG
1 CCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGAGCC
* * *
205802 CCTTTCAAATCCCACA-AGAGTTGGTGGCACTTTTTAGTCCTCAAAGAGCAGGA
1 CCTTTCAAAGCCCACACA-AGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGA
205855 TACACTTTAT
Statistics
Matches: 554, Mismatches: 42, Indels: 80
0.82 0.06 0.12
Matches are distributed among these distances:
54 6 0.01
55 189 0.34
56 27 0.05
57 23 0.04
58 11 0.02
59 73 0.13
60 80 0.14
61 138 0.25
62 5 0.01
63 2 0.00
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.24
Consensus pattern (56 bp):
CCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGAGCC
Found at i:205716 original size:116 final size:116
Alignment explanation
Indices: 205164--205854 Score: 785
Period size: 116 Copynumber: 6.0 Consensus size: 116
205154 GATGCTTTTT
* *
205164 CCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCGCAAAGAGCAGGA---C--C-CCTT
1 CCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGATGCCTTCTCCTT
** *
205223 TCGAAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGCAGGACG
66 TTAAAGCCCACACAAGTTGGTGGCACTTCCTAGTCCTCAAAGAGCAGGACG
* * ** * *
205274 CCTTCTCCTTTTAAAGCCCATACAAGTTCGTGGCATTTTTCAGTCTTCAAAGAGCGGGATGCCTT
1 ------CCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGATGCCTT
* * *
205339 TTCC-TTTAAAGCCCACACAAGTTGGTGGCACCTT-C-AGTCCTCAAAGAGCGGGATG
60 CTCCTTTTAAAGCCCACACAAGTTGGTGGCA-CTTCCTAGTCCTCAAAGAGCAGGACG
* *
205394 CCTTTTCTTTTAAAGCCCACCCAAGTTGGTGGCACC-TTCAGTCCTCAAAGAGCAGGATG-CTTT
1 -C----CTTTTAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGATGCCTTC
* * * *
205457 TTCTTTTCAAAGCCCACACAAGTTGGTGGCACCTTTC-AGTCCCCAAAGAGCAGGACC
61 TCCTTTT-AAAGCCCACACAAGTTGGTGGCA-CTTCCTAGTCCTCAAAGAGCAGGACG
* *
205514 CCTTTCAAAAAGCCCACACAAGTTGGTGGCA-CTTCCAGTCCTCAAAGAGCAGGATGCCTTCTCC
1 CCTTT--TAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGATGCCTTCTCC
*
205578 TCTTAAAGCCCACACAAGTTGGTGGCACTTCCTAGTCCTCAAAGAGCAGGACG
64 TTTTAAAGCCCACACAAGTTGGTGGCACTTCCTAGTCCTCAAAGAGCAGGACG
* * *
205631 CCTTTTAAAGCCCACACAAGTTGGTGGCA-CTTCCCAATCCTCAAAGAGCAGGACGCCTTCTCCT
1 CCTTTTAAAGCCCACACAAGTTGGTGGCACCTT-TCAGTCCTCAAAGAGCAGGATGCCTTCTCCT
*
205695 TTTAAAGCCCACACAAGTTGGTGGCACTTCCTAGTCCTCAAAGAGCAGGATG
65 TTTAAAGCCCACACAAGTTGGTGGCACTTCCTAGTCCTCAAAGAGCAGGACG
* *
205747 CCTTTTAAAGCCCACACAAGTTGATGGCACCTTTCAGTCCTCAAAGAGCAGGACGCCTT-T-C--
1 CCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGATGCCTTCTCCTT
* **
205808 --AAATCCCACA-AGAGTTGGTGGCACTTTTTAGTCCTCAAAGAGCAGGA
66 TTAAAGCCCACACA-AGTTGGTGGCACTTCCTAGTCCTCAAAGAGCAGGA
205855 TACACTTTAT
Statistics
Matches: 507, Mismatches: 46, Indels: 50
0.84 0.08 0.08
Matches are distributed among these distances:
109 1 0.00
110 42 0.08
114 1 0.00
115 32 0.06
116 181 0.36
117 99 0.20
118 32 0.06
119 54 0.11
120 35 0.07
121 25 0.05
122 5 0.01
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.24
Consensus pattern (116 bp):
CCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGATGCCTTCTCCTT
TTAAAGCCCACACAAGTTGGTGGCACTTCCTAGTCCTCAAAGAGCAGGACG
Found at i:206697 original size:19 final size:19
Alignment explanation
Indices: 206673--206759 Score: 123
Period size: 19 Copynumber: 4.9 Consensus size: 19
206663 AATTCAACAA
206673 TTTGTATCGATACATAAGT
1 TTTGTATCGATACATAAGT
206692 TTTGTATCGATAC--AA--
1 TTTGTATCGATACATAAGT
206707 --TGTATCGATACATAAGT
1 TTTGTATCGATACATAAGT
206724 TTTGTATCGATACATAAGT
1 TTTGTATCGATACATAAGT
*
206743 ATTGTATCGATACATAA
1 TTTGTATCGATACATAA
206760 TTAGCTACTA
Statistics
Matches: 61, Mismatches: 1, Indels: 12
0.82 0.01 0.16
Matches are distributed among these distances:
13 11 0.18
15 2 0.03
17 2 0.03
19 46 0.75
ACGTcount: A:0.34, C:0.11, G:0.15, T:0.39
Consensus pattern (19 bp):
TTTGTATCGATACATAAGT
Found at i:206712 original size:13 final size:13
Alignment explanation
Indices: 206694--206718 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
206684 ACATAAGTTT
206694 TGTATCGATACAA
1 TGTATCGATACAA
206707 TGTATCGATACA
1 TGTATCGATACA
206719 TAAGTTTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:206716 original size:32 final size:32
Alignment explanation
Indices: 206675--206737 Score: 126
Period size: 32 Copynumber: 2.0 Consensus size: 32
206665 TTCAACAATT
206675 TGTATCGATACATAAGTTTTGTATCGATACAA
1 TGTATCGATACATAAGTTTTGTATCGATACAA
206707 TGTATCGATACATAAGTTTTGTATCGATACA
1 TGTATCGATACATAAGTTTTGTATCGATACA
206738 TAAGTATTGT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.33, C:0.13, G:0.16, T:0.38
Consensus pattern (32 bp):
TGTATCGATACATAAGTTTTGTATCGATACAA
Found at i:206836 original size:33 final size:33
Alignment explanation
Indices: 206779--206841 Score: 90
Period size: 33 Copynumber: 1.9 Consensus size: 33
206769 ACCAAGGAAA
***
206779 TGTATCGATACATTTTTCTGTGTATCGATACTT
1 TGTATCGATACATGGATCTGTGTATCGATACTT
*
206812 TGTATCGATACATGGATCTTTGTATCGATA
1 TGTATCGATACATGGATCTGTGTATCGATA
206842 GATTTGGAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
33 26 1.00
ACGTcount: A:0.24, C:0.14, G:0.17, T:0.44
Consensus pattern (33 bp):
TGTATCGATACATGGATCTGTGTATCGATACTT
Found at i:207861 original size:13 final size:13
Alignment explanation
Indices: 207843--207868 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
207833 AATTTTTTTG
207843 TGTATCGATACAT
1 TGTATCGATACAT
207856 TGTATCGATACAT
1 TGTATCGATACAT
207869 ACTTGGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:212553 original size:15 final size:15
Alignment explanation
Indices: 212533--212563 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
212523 ATTTCGTTTG
*
212533 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
212548 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
212563 G
1 G
212564 GACATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Found at i:216649 original size:13 final size:13
Alignment explanation
Indices: 216631--216656 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
216621 AATTTTTTTG
216631 TGTATCGATACAT
1 TGTATCGATACAT
216644 TGTATCGATACAT
1 TGTATCGATACAT
216657 ACTTGGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:219412 original size:51 final size:51
Alignment explanation
Indices: 219352--219450 Score: 141
Period size: 51 Copynumber: 1.9 Consensus size: 51
219342 AATTCTTCGC
219352 AATCGGGGATA-TTCCAACTCCGATTTCATTT-TCAAAACA-CTAATTTTTTAT
1 AATCGGGGATACTT-CAACTCCGATTTCATTTCT-AAAACATC-AATTTTTTAT
*
219403 AATCGGGGATACTTCAACTCCGATTTTATTTCTAAAACATCAATTTTT
1 AATCGGGGATACTTCAACTCCGATTTCATTTCTAAAACATCAATTTTT
219451 CATCGGGGAT
Statistics
Matches: 44, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
51 40 0.91
52 4 0.09
ACGTcount: A:0.31, C:0.19, G:0.10, T:0.39
Consensus pattern (51 bp):
AATCGGGGATACTTCAACTCCGATTTCATTTCTAAAACATCAATTTTTTAT
Found at i:219522 original size:28 final size:27
Alignment explanation
Indices: 219450--219525 Score: 100
Period size: 27 Copynumber: 2.8 Consensus size: 27
219440 CATCAATTTT
*
219450 TCATCGGGGATACTCCAACCCCGTTAA
1 TCATCGGGGATACTCCAACCCCATTAA
219477 TCATCGGGGATACTCCAACCCCATT-A
1 TCATCGGGGATACTCCAACCCCATTAA
**
219503 TTTTCGAGGGGATACTCCAACCC
1 TCATC--GGGGATACTCCAACCC
219526 TGGTTTTATT
Statistics
Matches: 44, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
26 4 0.09
27 24 0.55
28 16 0.36
ACGTcount: A:0.25, C:0.33, G:0.18, T:0.24
Consensus pattern (27 bp):
TCATCGGGGATACTCCAACCCCATTAA
Found at i:219671 original size:52 final size:51
Alignment explanation
Indices: 219510--219679 Score: 160
Period size: 52 Copynumber: 3.3 Consensus size: 51
219500 TTATTTTCGA
* * * * * **
219510 GGGGATACTCCAACCCTGGTTTTATTTCCAAATCATCGATTTCCCACAATC
1 GGGGATACTCAAACCCTGATTTTATTTCCAAAACACCAATTTTTCACAATC
* * * * ***
219561 GGGGATACTCTAACCCCGACTTTATTTTCAAAACACCAATTTTCTTTTAATC
1 GGGGATACTCAAACCCTGATTTTATTTCCAAAACACCAATTTT-TCACAATC
* *
219613 GGGGATACTCAAACTCTGATTTTATTTCCAAAAACACCAATTTTTCACAATT
1 GGGGATACTCAAACCCTGATTTTATTTCC-AAAACACCAATTTTTCACAATC
* *
219665 GAGGATACTCCAACC
1 GGGGATACTCAAACC
219680 TCGTTACTTC
Statistics
Matches: 92, Mismatches: 25, Indels: 3
0.77 0.21 0.03
Matches are distributed among these distances:
51 34 0.37
52 44 0.48
53 14 0.15
ACGTcount: A:0.30, C:0.26, G:0.12, T:0.32
Consensus pattern (51 bp):
GGGGATACTCAAACCCTGATTTTATTTCCAAAACACCAATTTTTCACAATC
Found at i:219699 original size:28 final size:28
Alignment explanation
Indices: 219667--219738 Score: 99
Period size: 28 Copynumber: 2.6 Consensus size: 28
219657 TCACAATTGA
* * **
219667 GGATACTCCAACCTCGTTACTTCATCGG
1 GGATACTCCAACCCCGTTACCTCAGAGG
*
219695 GGATACTCCAACCCCGTTACCTCCGAGG
1 GGATACTCCAACCCCGTTACCTCAGAGG
219723 GGATACTCCAACCCCG
1 GGATACTCCAACCCCG
219739 ACGTTTTTTT
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.22, C:0.38, G:0.19, T:0.21
Consensus pattern (28 bp):
GGATACTCCAACCCCGTTACCTCAGAGG
Found at i:219724 original size:211 final size:205
Alignment explanation
Indices: 219351--219783 Score: 559
Period size: 211 Copynumber: 2.1 Consensus size: 205
219341 CAATTCTTCG
* * *
219351 CAATCGGGGATATTCCAACTCCGATTTCATTTTCAAAACACTAATTTTTTATAATCGGGGATACT
1 CAATCGGGGATACTCCAACCCCGATTTCATTTTCAAAACACCAATTTTTTATAATCGGGGATACT
* * *
219416 TCAACTCCGATTTTATTTCTAAAACATCAATTTTTCATCGGGGATACTCCAACCCCGTTAATCAT
66 TCAACTCCGATTTTATTTCAAAAACACCAATTTTTCATCGAGGATACTCCAACCCCGTTAATCAT
** * *
219481 CGGGGATACTCCAACCCCATTATTTTCGAGGGGATACTCCAACCCTG-GTTTTATTTCCAAATCA
131 CGGGGATACTCCAACCCCATTACCTCCGAGGGGATACTCCAACCCCGAGTTTT-TTTCCAAATCA
219545 TCGATTTCCCA
195 TCGATTTCCCA
* *
219556 CAATCGGGGATACTCTAACCCCGACTTT-ATTTTCAAAACACCAATTTTCTTTTAATCGGGGATA
1 CAATCGGGGATACTCCAACCCCGA-TTTCATTTTCAAAACACCAATTTT-TTATAATCGGGGATA
* * *
219620 C-TCAAACTCTGATTTTATTTCCAAAAACACCAATTTTTCACAATTGAGGATACTCCAACCTCGT
64 CTTC-AACTCCGATTTTATTT-CAAAAACACCAATTTTT--C-ATCGAGGATACTCCAACCCCGT
* *
219684 TACTTCATCGGGGATACTCCAACCCCGTTACCTCCGAGGGGATACTCCAACCCCGACGTTTTTTT
124 TA-ATCATCGGGGATACTCCAACCCCATTACCTCCGAGGGGATACTCCAACCCCGA-GTTTTTTT
* * *
219749 TCTAATCATCGATTTCTCA
187 CCAAATCATCGATTTCCCA
*
219768 CAA-CCGGGATACTCCA
1 CAATCGGGGATACTCCA
219784 GCCCTGTCAT
Statistics
Matches: 196, Mismatches: 22, Indels: 14
0.84 0.09 0.06
Matches are distributed among these distances:
205 42 0.21
206 33 0.17
207 15 0.08
209 1 0.01
210 21 0.11
211 57 0.29
212 22 0.11
213 5 0.03
ACGTcount: A:0.28, C:0.27, G:0.13, T:0.32
Consensus pattern (205 bp):
CAATCGGGGATACTCCAACCCCGATTTCATTTTCAAAACACCAATTTTTTATAATCGGGGATACT
TCAACTCCGATTTTATTTCAAAAACACCAATTTTTCATCGAGGATACTCCAACCCCGTTAATCAT
CGGGGATACTCCAACCCCATTACCTCCGAGGGGATACTCCAACCCCGAGTTTTTTTCCAAATCAT
CGATTTCCCA
Found at i:222761 original size:21 final size:21
Alignment explanation
Indices: 222737--222780 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
222727 TAATATTCTT
* * *
222737 GAAAAGAAATTAAGTGAATTA
1 GAAAAGAAAATAAATAAATTA
222758 GAAAAGAAAATAAATAAATTA
1 GAAAAGAAAATAAATAAATTA
222779 GA
1 GA
222781 GGAGAAAAGA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.64, C:0.00, G:0.16, T:0.20
Consensus pattern (21 bp):
GAAAAGAAAATAAATAAATTA
Found at i:222786 original size:21 final size:21
Alignment explanation
Indices: 222753--222793 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
222743 AAATTAAGTG
*
222753 AATTAGAAAAGAAAATAAATA
1 AATTAGAAAAGAAAAGAAATA
**
222774 AATTAGAGGAGAAAAGAAAT
1 AATTAGAAAAGAAAAGAAAT
222794 GAGTTGCAAG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.66, C:0.00, G:0.17, T:0.17
Consensus pattern (21 bp):
AATTAGAAAAGAAAAGAAATA
Found at i:226038 original size:20 final size:21
Alignment explanation
Indices: 226007--226045 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
225997 AGGTCAAAAC
226007 CCTAGAATGTATCGATACACA
1 CCTAGAATGTATCGATACACA
*
226028 CCTAG-ATGTATTGATACA
1 CCTAGAATGTATCGATACA
226046 TATTGCTTAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.36, C:0.21, G:0.15, T:0.28
Consensus pattern (21 bp):
CCTAGAATGTATCGATACACA
Found at i:227992 original size:20 final size:20
Alignment explanation
Indices: 227944--228001 Score: 75
Period size: 20 Copynumber: 2.9 Consensus size: 20
227934 ATTTTGGAAG
*
227944 GAAATTGTATCGATACAATTAA
1 GAAATTGTATCAATAC-A-TAA
227966 -AAA-TGTATCAATACATAA
1 GAAATTGTATCAATACATAA
227984 GAAATTGTATCAATACAT
1 GAAATTGTATCAATACAT
228002 TTCTCATTAT
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
18 3 0.09
19 4 0.12
20 23 0.70
21 3 0.09
ACGTcount: A:0.48, C:0.10, G:0.10, T:0.31
Consensus pattern (20 bp):
GAAATTGTATCAATACATAA
Found at i:230631 original size:97 final size:95
Alignment explanation
Indices: 230421--230844 Score: 471
Period size: 97 Copynumber: 4.4 Consensus size: 95
230411 TTCCTTAATC
* * ** * **
230421 GGGGATACTTCAACCC-ATTCTTCTGAAAGGATACTCCAATCCTATTTTTAAAATTGTCAATATT
1 GGGGATACTCCAACCCTATTCTTCCGAGGGGATACTCTAA-CCCGTTTTTAAAATTGTCAATATT
* * * *
230485 TAAATCTTATTTTACCT-AATTATCATCAAT
65 TAAACCTTATTTTGCTTAAATTATCATCATT
* * *
230515 GGGGATACTCCAACCCTATTC-TCCGGAGGGGATACTCTGACCTCGTTTTTAAAATTATCAAGAT
1 GGGGATACTCCAACCCTATTCTTCC-GAGGGGATACTCTAACC-CGTTTTTAAAATTGTCAATAT
* *
230579 TTAAACCTTAATTTTGCTTAAATCATCATCATC
64 TTAAACCTT-ATTTTGCTTAAATTATCATCATT
* *
230612 GGGGATACTCCAACCCTATTCTTTCGAGGGGATACT-TCAACCCCGTTTTTCAAATTGTCAATAT
1 GGGGATACTCCAACCCTATTCTTCCGAGGGGATACTCT-AA-CCCGTTTTTAAAATTGTCAATAT
* * *
230676 TTAAATCTTATTTTTCTTAATTTATCATTCATT
64 TTAAACCTTATTTTGCTTAAATTATCA-TCATT
* * *
230709 GGGGATACTCCAACCCCATTCTTCCGAGGGGATACTCCAACCCTGTTTTTAAAGTTGTCAATATT
1 GGGGATACTCCAACCCTATTCTTCCGAGGGGATACTCTAACCC-GTTTTTAAAATTGTCAATATT
*
230774 TAAACCTTATTTTTGCTTAAATAATCATCATT
65 TAAACCTTA-TTTTGCTTAAATTATCATCATT
* * *
230806 GGAGATACTCCAACCCTATGT-TTCTGAGGGGATAGTCTA
1 GGGGATACTCCAACCCTAT-TCTTCCGAGGGGATACTCTA
230845 GCCCCATTCC
Statistics
Matches: 277, Mismatches: 40, Indels: 23
0.81 0.12 0.07
Matches are distributed among these distances:
94 19 0.07
95 40 0.14
96 26 0.09
97 173 0.62
98 19 0.07
ACGTcount: A:0.29, C:0.21, G:0.13, T:0.37
Consensus pattern (95 bp):
GGGGATACTCCAACCCTATTCTTCCGAGGGGATACTCTAACCCGTTTTTAAAATTGTCAATATTT
AAACCTTATTTTGCTTAAATTATCATCATT
Found at i:230759 original size:194 final size:193
Alignment explanation
Indices: 230418--230839 Score: 568
Period size: 194 Copynumber: 2.2 Consensus size: 193
230408 AATTTCCTTA
* ** * *
230418 ATCGGGGATACTTCAACCC-ATTC-TTCTGAAAGGATACTCCAATCCTATTTTTAAAATTGTCAA
1 ATCGGGGATACTCCAACCCTATTCTTTCTGAGGGGATACTCCAACCCCATTTTTAAAATTGTCAA
*
230481 TATTTAAATCTTATTTTACCTAATTATCATCAATGGGGATACTCCAACCCTATTCTCCGGAGGGG
66 TATTTAAATCTTATTTTACCTAATTATCATCAATGGGGATACTCCAACCCCATTCTCCGGAGGGG
** *
230546 ATACTCTGACCTCGTTTTTAAAATTATCAAGATTTAAACCTTAATTTTGCTTAAATCATCATC
131 ATACTCCAACCTCGTTTTTAAAATTATCAAGATTTAAACCTTAATTTTGCTTAAATAATCATC
* * *
230609 ATCGGGGATACTCCAACCCTATTCTTTC-GAGGGGATACTTCAACCCCGTTTTTCAAATTGTCAA
1 ATCGGGGATACTCCAACCCTATTCTTTCTGAGGGGATACTCCAACCCCATTTTTAAAATTGTCAA
* * *
230673 TATTTAAATCTTATTTTTCTTAATTTATCATTCATTGGGGATACTCCAACCCCATTCTTCC-GAG
66 TATTTAAATCTTATTTTACCTAA-TTATCA-TCAATGGGGATACTCCAACCCCATTC-TCCGGAG
* * * *
230737 GGGATACTCCAACC-CTGTTTTTAAAGTTGTCAATATTTAAACCTTATTTTTGCTTAAATAATCA
128 GGGATACTCCAACCTC-GTTTTTAAAATTATCAAGATTTAAACCTTAATTTTGCTTAAATAATCA
230801 TC
192 TC
* * *
230803 ATTGGAGATACTCCAACCCTA-TGTTTCTGAGGGGATA
1 ATCGGGGATACTCCAACCCTATTCTTTCTGAGGGGATA
230840 GTCTAGCCCC
Statistics
Matches: 202, Mismatches: 22, Indels: 11
0.86 0.09 0.05
Matches are distributed among these distances:
191 18 0.09
192 54 0.27
193 15 0.07
194 112 0.55
195 3 0.01
ACGTcount: A:0.29, C:0.21, G:0.13, T:0.37
Consensus pattern (193 bp):
ATCGGGGATACTCCAACCCTATTCTTTCTGAGGGGATACTCCAACCCCATTTTTAAAATTGTCAA
TATTTAAATCTTATTTTACCTAATTATCATCAATGGGGATACTCCAACCCCATTCTCCGGAGGGG
ATACTCCAACCTCGTTTTTAAAATTATCAAGATTTAAACCTTAATTTTGCTTAAATAATCATC
Found at i:235653 original size:16 final size:16
Alignment explanation
Indices: 235632--235663 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
235622 GTTCTATGTA
*
235632 TTCCATCAAATGCATG
1 TTCCATAAAATGCATG
235648 TTCCATAAAATGCATG
1 TTCCATAAAATGCATG
235664 AACAACCATG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.34, C:0.22, G:0.12, T:0.31
Consensus pattern (16 bp):
TTCCATAAAATGCATG
Found at i:237726 original size:19 final size:19
Alignment explanation
Indices: 237702--237756 Score: 83
Period size: 19 Copynumber: 2.8 Consensus size: 19
237692 TGTATCGATA
*
237702 CATTGTATTGATACATACT
1 CATTGTATCGATACATACT
237721 CATTGTATCGATACATACT
1 CATTGTATCGATACATACT
*
237740 CACTTGTATGGATACAT
1 CA-TTGTATCGATACAT
237757 GAAACTGGCA
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
19 20 0.61
20 13 0.39
ACGTcount: A:0.31, C:0.18, G:0.13, T:0.38
Consensus pattern (19 bp):
CATTGTATCGATACATACT
Found at i:237830 original size:20 final size:20
Alignment explanation
Indices: 237787--237838 Score: 68
Period size: 20 Copynumber: 2.6 Consensus size: 20
237777 CAAGTGAAAT
* **
237787 GTATCGATACATGGGACATT
1 GTATCGATACATGGGAAAAA
*
237807 GTATCGATACATGGTAAAAA
1 GTATCGATACATGGGAAAAA
237827 GTATCGATACAT
1 GTATCGATACAT
237839 TATGCCCAGC
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.37, C:0.13, G:0.21, T:0.29
Consensus pattern (20 bp):
GTATCGATACATGGGAAAAA
Found at i:243098 original size:20 final size:20
Alignment explanation
Indices: 243073--243110 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
243063 CTGTTAAGGA
243073 AATGTATCGATACATTATTT
1 AATGTATCGATACATTATTT
243093 AATGTATCGATACATTAT
1 AATGTATCGATACATTAT
243111 ATCGATACAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.37, C:0.11, G:0.11, T:0.42
Consensus pattern (20 bp):
AATGTATCGATACATTATTT
Found at i:243115 original size:13 final size:13
Alignment explanation
Indices: 243097--243121 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
243087 TTATTTAATG
243097 TATCGATACATTA
1 TATCGATACATTA
243110 TATCGATACATT
1 TATCGATACATT
243122 GATCTTTGCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.08, T:0.40
Consensus pattern (13 bp):
TATCGATACATTA
Found at i:243135 original size:33 final size:32
Alignment explanation
Indices: 243077--243140 Score: 85
Period size: 33 Copynumber: 1.9 Consensus size: 32
243067 TAAGGAAATG
*
243077 TATCGATACATTATTTAATGTATCGATACATTA
1 TATCGATACATTATTT-ATGCATCGATACATTA
243110 TATCGATACATTGATCTT-TGCATCGATACAT
1 TATCGATACATT-AT-TTATGCATCGATACAT
243141 CTGGGAATCT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
33 24 0.86
34 2 0.07
35 2 0.07
ACGTcount: A:0.33, C:0.16, G:0.11, T:0.41
Consensus pattern (32 bp):
TATCGATACATTATTTATGCATCGATACATTA
Found at i:249432 original size:13 final size:13
Alignment explanation
Indices: 249414--249440 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
249404 ACATTATGCT
249414 TTGTATCGATACA
1 TTGTATCGATACA
249427 TTGTATCGATACA
1 TTGTATCGATACA
249440 T
1 T
249441 ACTCATTGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:249471 original size:20 final size:19
Alignment explanation
Indices: 249425--249479 Score: 92
Period size: 19 Copynumber: 2.8 Consensus size: 19
249415 TGTATCGATA
249425 CATTGTATCGATACATACT
1 CATTGTATCGATACATACT
*
249444 CATTGTATCGACACATACT
1 CATTGTATCGATACATACT
249463 CACTTGTATCGATACAT
1 CA-TTGTATCGATACAT
249480 GAAACTGGCA
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
19 20 0.61
20 13 0.39
ACGTcount: A:0.31, C:0.24, G:0.11, T:0.35
Consensus pattern (19 bp):
CATTGTATCGATACATACT
Found at i:253122 original size:15 final size:15
Alignment explanation
Indices: 253102--253133 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
253092 TAAATTTAAT
*
253102 TATTAAATATATAAA
1 TATTAAATATAAAAA
253117 TATTAAATATAAAAA
1 TATTAAATATAAAAA
253132 TA
1 TA
253134 AAATTTTATG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (15 bp):
TATTAAATATAAAAA
Found at i:254230 original size:28 final size:29
Alignment explanation
Indices: 254199--254260 Score: 117
Period size: 28 Copynumber: 2.2 Consensus size: 29
254189 TAAATAATAA
254199 ATAAATAAAATATATTATACATTAA-TTT
1 ATAAATAAAATATATTATACATTAATTTT
254227 ATAAATAAAATATATTATACATTAATTTT
1 ATAAATAAAATATATTATACATTAATTTT
254256 ATAAA
1 ATAAA
254261 ATTTTAATAT
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
28 25 0.76
29 8 0.24
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (29 bp):
ATAAATAAAATATATTATACATTAATTTT
Found at i:257188 original size:16 final size:16
Alignment explanation
Indices: 257175--257205 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
257165 TTTCGTGTTG
257175 TAATCATGTCGTGTCA
1 TAATCATGTCGTGTCA
*
257191 TAATCGTGTCGTGTC
1 TAATCATGTCGTGTC
257206 TTATCATATT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.19, C:0.19, G:0.23, T:0.39
Consensus pattern (16 bp):
TAATCATGTCGTGTCA
Found at i:259539 original size:20 final size:20
Alignment explanation
Indices: 259516--259588 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
259506 ACAATTCAAA
259516 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
****
259536 GTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCA-AT
259557 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
259577 GTATCGATACAT
1 GTATCGATACAT
259589 AAAAAAGATG
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.32
Consensus pattern (20 bp):
GTATCGATACATGTTGCAAT
Found at i:259560 original size:21 final size:21
Alignment explanation
Indices: 259534--259609 Score: 100
Period size: 21 Copynumber: 3.7 Consensus size: 21
259524 ACATGTTGCA
259534 ATGTATCGATACATGAAAAAG
1 ATGTATCGATACATGAAAAAG
****
259555 ATGTATCGATACATGTTGCA-
1 ATGTATCGATACATGAAAAAG
*
259575 ATGTATCGATACATAAAAAAG
1 ATGTATCGATACATGAAAAAG
259596 ATGTATCGATACAT
1 ATGTATCGATACAT
259610 TTCTTGGCAG
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
20 15 0.33
21 30 0.67
ACGTcount: A:0.42, C:0.12, G:0.17, T:0.29
Consensus pattern (21 bp):
ATGTATCGATACATGAAAAAG
Found at i:259567 original size:41 final size:41
Alignment explanation
Indices: 259516--259609 Score: 179
Period size: 41 Copynumber: 2.3 Consensus size: 41
259506 ACAATTCAAA
*
259516 GTATCGATACATGTTGCAATGTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
259557 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
259598 GTATCGATACAT
1 GTATCGATACAT
259610 TTCTTGGCAG
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 52 1.00
ACGTcount: A:0.39, C:0.13, G:0.18, T:0.30
Consensus pattern (41 bp):
GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
Found at i:259666 original size:13 final size:13
Alignment explanation
Indices: 259648--259673 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
259638 TACAGCAAGT
259648 ATGTATCGATACA
1 ATGTATCGATACA
259661 ATGTATCGATACA
1 ATGTATCGATACA
259674 CAAAAAAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:264813 original size:19 final size:20
Alignment explanation
Indices: 264769--264819 Score: 68
Period size: 20 Copynumber: 2.6 Consensus size: 20
264759 CTGTCAGTTT
* **
264769 CATGTATCAATACAATTGCG
1 CATGTATCGATACAATTGAA
264789 CATGTATCGATACAATT-AA
1 CATGTATCGATACAATTGAA
264808 CATGTATCGATA
1 CATGTATCGATA
264820 AAATGTATGA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
19 12 0.43
20 16 0.57
ACGTcount: A:0.37, C:0.18, G:0.14, T:0.31
Consensus pattern (20 bp):
CATGTATCGATACAATTGAA
Found at i:267870 original size:19 final size:20
Alignment explanation
Indices: 267833--267870 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
267823 TCCTGTAGCC
*
267833 ATGTATCGTTACAATTCATA
1 ATGTATCGATACAATTCATA
267853 ATGTATCGATAC-ATTCAT
1 ATGTATCGATACAATTCAT
267871 TTGAAATTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.34, C:0.16, G:0.11, T:0.39
Consensus pattern (20 bp):
ATGTATCGATACAATTCATA
Found at i:267937 original size:20 final size:19
Alignment explanation
Indices: 267895--267948 Score: 65
Period size: 20 Copynumber: 2.7 Consensus size: 19
267885 GTTACAAGCA
267895 ATGTATCGATACAATTCGTC
1 ATGTATCGATACAATTCG-C
267915 ATGTATCGATACAATGTAC-C
1 ATGTATCGATACAAT-T-CGC
*
267935 ATGTATGGATACAA
1 ATGTATCGATACAA
267949 AAAGTGGTAG
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
20 29 0.94
21 1 0.03
22 1 0.03
ACGTcount: A:0.35, C:0.17, G:0.17, T:0.31
Consensus pattern (19 bp):
ATGTATCGATACAATTCGC
Found at i:268002 original size:20 final size:20
Alignment explanation
Indices: 267977--268030 Score: 83
Period size: 19 Copynumber: 2.8 Consensus size: 20
267967 CTGCCAGTTT
**
267977 CATGTATCGATACAATTGTC
1 CATGTATCGATACAATTGAA
267997 CATGTATCGATAC-ATTGAA
1 CATGTATCGATACAATTGAA
268016 CATGTATCGATACAA
1 CATGTATCGATACAA
268031 AGCATAATGT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
19 17 0.55
20 14 0.45
ACGTcount: A:0.35, C:0.19, G:0.15, T:0.31
Consensus pattern (20 bp):
CATGTATCGATACAATTGAA
Found at i:273488 original size:20 final size:20
Alignment explanation
Indices: 273465--273503 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
273455 TCATGTATCG
273465 ATACAATATATCAATACAAT
1 ATACAATATATCAATACAAT
* * *
273485 ATACTATGTATCGATACAA
1 ATACAATATATCAATACAA
273504 ACAGTGGTAG
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.49, C:0.15, G:0.05, T:0.31
Consensus pattern (20 bp):
ATACAATATATCAATACAAT
Found at i:273557 original size:19 final size:20
Alignment explanation
Indices: 273532--273585 Score: 74
Period size: 20 Copynumber: 2.8 Consensus size: 20
273522 CTGCCAGTTT
*
273532 AATGTATCGATACATTG-AA
1 AATGTATCGATACATAGCAA
* *
273551 CATGTATCGATACAAAGCAA
1 AATGTATCGATACATAGCAA
273571 AATGTATCGATACAT
1 AATGTATCGATACAT
273586 CTAGGTGTGT
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
19 14 0.48
20 15 0.52
ACGTcount: A:0.43, C:0.15, G:0.15, T:0.28
Consensus pattern (20 bp):
AATGTATCGATACATAGCAA
Found at i:277685 original size:15 final size:15
Alignment explanation
Indices: 277667--277701 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
277657 CAAGTCAACT
277667 TCATCATTATCATCA
1 TCATCATTATCATCA
*
277682 TCATCATTATCTTCA
1 TCATCATTATCATCA
277697 TCATC
1 TCATC
277702 TTTGATGGTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.29, C:0.29, G:0.00, T:0.43
Consensus pattern (15 bp):
TCATCATTATCATCA
Found at i:279334 original size:33 final size:33
Alignment explanation
Indices: 279297--279361 Score: 94
Period size: 33 Copynumber: 2.0 Consensus size: 33
279287 TTTGGGATAA
* * **
279297 TGTATTGATACAATTTGTTATGTATCGATACAT
1 TGTATCGATACAATATGCCATGTATCGATACAT
279330 TGTATCGATACAATATGCCATGTATCGATACA
1 TGTATCGATACAATATGCCATGTATCGATACA
279362 AATAGTGGTA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 28 1.00
ACGTcount: A:0.32, C:0.14, G:0.15, T:0.38
Consensus pattern (33 bp):
TGTATCGATACAATATGCCATGTATCGATACAT
Found at i:279335 original size:13 final size:13
Alignment explanation
Indices: 279317--279341 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
279307 CAATTTGTTA
279317 TGTATCGATACAT
1 TGTATCGATACAT
279330 TGTATCGATACA
1 TGTATCGATACA
279342 ATATGCCATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:279460 original size:20 final size:20
Alignment explanation
Indices: 279411--279463 Score: 97
Period size: 20 Copynumber: 2.6 Consensus size: 20
279401 ACAATTGTGC
*
279411 ATGTATCGACACAAAGCATA
1 ATGTATCGATACAAAGCATA
279431 ATGTATCGATACAAAGCATA
1 ATGTATCGATACAAAGCATA
279451 ATGTATCGATACA
1 ATGTATCGATACA
279464 TACAAGGGTT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.43, C:0.17, G:0.15, T:0.25
Consensus pattern (20 bp):
ATGTATCGATACAAAGCATA
Found at i:284587 original size:88 final size:85
Alignment explanation
Indices: 284332--284588 Score: 232
Period size: 88 Copynumber: 2.9 Consensus size: 85
284322 TTTTTCCAAC
* * *
284332 GATAAAATTATATGAAGAAAAATTTGAATTTTTGTTA-GAGCAAGGTTGGAGTA-CCTTTTCAGA
1 GATAAAATTAT-GGAAG-AAAATTTGAATTTTTGTTAGGA-CAAGGTTGGAGTATCC--CTCAAA
* * * *
284395 ATATTATGGATGGAGTTTCCCTCAAA
61 ATAATAGGGATAGAGTTT-CATCAAA
* ** * * ** *
284421 GATAAAATTCCATGAAAGTTAATTT-AAATTTTGTTAGAACGGGGTTGGAGTATCCCTCGAAATA
1 GATAAAATT--ATGGAAGAAAATTTGAATTTTTGTTAGGACAAGGTTGGAGTATCCCTCAAAATA
* *
284485 ATGGGGATAGAGTTTCATTAAA
64 ATAGGGATAGAGTTTCATCAAA
284507 GATAAAATTATGCGAAGAAAATTTTGAATTTTTGTTAGGACAAGGTTGGAGTATGCCCTCAAAAT
1 GATAAAATTATG-GAAGAAAA-TTTGAATTTTTGTTAGGACAAGGTTGGAGTAT-CCCTCAAAAT
*
284572 AGTAGGGATAGAGTTTC
63 AATAGGGATAGAGTTTC
284589 CCTAAAATCA
Statistics
Matches: 133, Mismatches: 27, Indels: 17
0.75 0.15 0.10
Matches are distributed among these distances:
84 3 0.02
85 5 0.04
86 17 0.13
87 41 0.31
88 45 0.34
89 17 0.13
90 3 0.02
91 2 0.02
ACGTcount: A:0.36, C:0.09, G:0.22, T:0.33
Consensus pattern (85 bp):
GATAAAATTATGGAAGAAAATTTGAATTTTTGTTAGGACAAGGTTGGAGTATCCCTCAAAATAAT
AGGGATAGAGTTTCATCAAA
Found at i:287897 original size:13 final size:13
Alignment explanation
Indices: 287879--287904 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
287869 CAATTTTTTG
287879 TGTATCGATACAT
1 TGTATCGATACAT
287892 TGTATCGATACAT
1 TGTATCGATACAT
287905 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:288624 original size:36 final size:36
Alignment explanation
Indices: 288581--288653 Score: 146
Period size: 36 Copynumber: 2.0 Consensus size: 36
288571 ATAAGGTAAT
288581 TCACGCATTCTCTCCTTTATCTCCCCCGTTTATTAA
1 TCACGCATTCTCTCCTTTATCTCCCCCGTTTATTAA
288617 TCACGCATTCTCTCCTTTATCTCCCCCGTTTATTAA
1 TCACGCATTCTCTCCTTTATCTCCCCCGTTTATTAA
288653 T
1 T
288654 AAATCTCCCC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.16, C:0.36, G:0.05, T:0.42
Consensus pattern (36 bp):
TCACGCATTCTCTCCTTTATCTCCCCCGTTTATTAA
Found at i:288677 original size:29 final size:29
Alignment explanation
Indices: 288644--288703 Score: 120
Period size: 29 Copynumber: 2.1 Consensus size: 29
288634 TATCTCCCCC
288644 GTTTATTAATAAATCTCCCCCTTAATCAA
1 GTTTATTAATAAATCTCCCCCTTAATCAA
288673 GTTTATTAATAAATCTCCCCCTTAATCAA
1 GTTTATTAATAAATCTCCCCCTTAATCAA
288702 GT
1 GT
288704 AATTCATATC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.33, C:0.23, G:0.05, T:0.38
Consensus pattern (29 bp):
GTTTATTAATAAATCTCCCCCTTAATCAA
Found at i:290521 original size:13 final size:13
Alignment explanation
Indices: 290503--290541 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
290493 ATAATCACCC
*
290503 TGTATCGATACAG
1 TGTATCGATACAA
290516 TGTATCGATACAA
1 TGTATCGATACAA
290529 TGTATCGATACAA
1 TGTATCGATACAA
290542 CAAAAAATGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:290552 original size:20 final size:20
Alignment explanation
Indices: 290527--290605 Score: 70
Period size: 20 Copynumber: 3.7 Consensus size: 20
290517 GTATCGATAC
290527 AATGTATCGATACAACAAAA
1 AATGTATCGATACAACAAAA
* *
290547 AATGTATCGATACATAGAATTTCCA
1 AATGTATCGATACA-ACAA----AA
*
290572 GATGTATCGATAC-ACAAAA
1 AATGTATCGATACAACAAAA
290591 ACATGTATCGATACA
1 A-ATGTATCGATACA
290606 TTTTGGACAT
Statistics
Matches: 46, Mismatches: 6, Indels: 13
0.71 0.09 0.20
Matches are distributed among these distances:
19 1 0.02
20 26 0.57
21 3 0.07
23 3 0.07
25 13 0.28
ACGTcount: A:0.46, C:0.16, G:0.13, T:0.25
Consensus pattern (20 bp):
AATGTATCGATACAACAAAA
Found at i:292639 original size:15 final size:15
Alignment explanation
Indices: 292619--292649 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
292609 ATTTCGTTTG
*
292619 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
292634 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
292649 G
1 G
292650 GACATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Found at i:296729 original size:13 final size:13
Alignment explanation
Indices: 296711--296736 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
296701 CAATTTTTTG
296711 TGTATCGATACAT
1 TGTATCGATACAT
296724 TGTATCGATACAT
1 TGTATCGATACAT
296737 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:296801 original size:21 final size:21
Alignment explanation
Indices: 296775--296850 Score: 100
Period size: 21 Copynumber: 3.7 Consensus size: 21
296765 CTGCCAAGAA
*
296775 ATGTATCGATACATCTTTTTT
1 ATGTATCGATACATCTTTTTC
****
296796 ATGTATCGATACAT-TGCAAC
1 ATGTATCGATACATCTTTTTC
296816 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACATCTTTTTC
296837 ATGTATCGATACAT
1 ATGTATCGATACAT
296851 TGCAACATGT
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
20 15 0.33
21 30 0.67
ACGTcount: A:0.29, C:0.17, G:0.12, T:0.42
Consensus pattern (21 bp):
ATGTATCGATACATCTTTTTC
Found at i:296821 original size:20 final size:20
Alignment explanation
Indices: 296796--296868 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
296786 CATCTTTTTT
296796 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
****
296816 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACAT-TGCAAC
296837 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
296857 ATGTATCGATAC
1 ATGTATCGATAC
296869 TTTGAATTGT
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.36
Consensus pattern (20 bp):
ATGTATCGATACATTGCAAC
Found at i:296832 original size:41 final size:41
Alignment explanation
Indices: 296775--296868 Score: 179
Period size: 41 Copynumber: 2.3 Consensus size: 41
296765 CTGCCAAGAA
*
296775 ATGTATCGATACATCTTTTTTATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
296816 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
296857 ATGTATCGATAC
1 ATGTATCGATAC
296869 TTTGAATTGT
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 52 1.00
ACGTcount: A:0.30, C:0.18, G:0.13, T:0.39
Consensus pattern (41 bp):
ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
Found at i:299478 original size:5 final size:5
Alignment explanation
Indices: 299468--299523 Score: 51
Period size: 5 Copynumber: 10.8 Consensus size: 5
299458 AATAGTTTAG
* **
299468 AAATA AAATA AAATA AAATA AGA-A ATTTA AAATTA AAATA AAATTA AAATTA
1 AAATA AAATA AAATA AAATA AAATA AAATA AAA-TA AAATA AAA-TA AAA-TA
299520 AAAT
1 AAAT
299524 TAATAATCAT
Statistics
Matches: 43, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
4 2 0.05
5 25 0.58
6 16 0.37
ACGTcount: A:0.71, C:0.00, G:0.02, T:0.27
Consensus pattern (5 bp):
AAATA
Found at i:299505 original size:6 final size:6
Alignment explanation
Indices: 299471--299526 Score: 64
Period size: 6 Copynumber: 9.5 Consensus size: 6
299461 AGTTTAGAAA
*
299471 TAAAA- TAAAA- TAAAAT AAGAAATT TAAAAT TAAAA- TAAAAT TAAAAT
1 TAAAAT TAAAAT TAAAAT TA-AAA-T TAAAAT TAAAAT TAAAAT TAAAAT
299518 TAAAAT TAA
1 TAAAAT TAA
299527 TAATCATAAC
Statistics
Matches: 45, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
5 15 0.33
6 22 0.49
7 6 0.13
8 2 0.04
ACGTcount: A:0.70, C:0.00, G:0.02, T:0.29
Consensus pattern (6 bp):
TAAAAT
Found at i:301008 original size:50 final size:53
Alignment explanation
Indices: 300952--301094 Score: 141
Period size: 58 Copynumber: 2.6 Consensus size: 53
300942 TATTAATTTC
*
300952 CATGATTTATGGACTATTATG-CATTTCA-CA-T-GGCCATTTAAGTCATTTTT
1 CATGATTTA-GGACTATTATGTAATTTCAGCATTAGGCCATTTAAGTCATTTTT
* * *
301002 CATGATTTGAAGACTATTTTGTAATTTCATGCATTTTAGGGCCATTTAAGTTATTTTT
1 CATGATTT-AGGACTATTATGTAATTTCA-GCA--TTA-GGCCATTTAAGTCATTTTT
*
301060 CATGATTTAAGGACTATCATGTAATTTCATGCATT
1 CATGATTT-AGGACTATTATGTAATTTCA-GCATT
301095 TTAGGGTCAT
Statistics
Matches: 76, Mismatches: 8, Indels: 12
0.79 0.08 0.12
Matches are distributed among these distances:
50 17 0.22
51 7 0.09
53 2 0.03
56 3 0.04
58 47 0.62
ACGTcount: A:0.27, C:0.13, G:0.15, T:0.45
Consensus pattern (53 bp):
CATGATTTAGGACTATTATGTAATTTCAGCATTAGGCCATTTAAGTCATTTTT
Found at i:301048 original size:58 final size:58
Alignment explanation
Indices: 300983--301107 Score: 198
Period size: 58 Copynumber: 2.2 Consensus size: 58
300973 CATTTCACAT
**
300983 GGCCATTTAAGTCATTTTTCATGATTTGAA-GACTATTTTGTAATTTCATGCATTTTAG
1 GGCCATTTAAGTCATTTTTCATGATTT-AAGGACTATCATGTAATTTCATGCATTTTAG
*
301041 GGCCATTTAAGTTATTTTTCATGATTTAAGGACTATCATGTAATTTCATGCATTTTAG
1 GGCCATTTAAGTCATTTTTCATGATTTAAGGACTATCATGTAATTTCATGCATTTTAG
*
301099 GGTCATTTA
1 GGCCATTTA
301108 TGTTTTTTAC
Statistics
Matches: 62, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
57 2 0.03
58 60 0.97
ACGTcount: A:0.26, C:0.12, G:0.16, T:0.46
Consensus pattern (58 bp):
GGCCATTTAAGTCATTTTTCATGATTTAAGGACTATCATGTAATTTCATGCATTTTAG
Found at i:301110 original size:29 final size:29
Alignment explanation
Indices: 301017--301110 Score: 79
Period size: 29 Copynumber: 3.3 Consensus size: 29
301007 TTTGAAGACT
*
301017 ATTT-TGTAATTTCATGCATTTTAGGGCC
1 ATTTATGTAATTTCATGCATTTTAGGGAC
* * *
301045 ATTTAAGTTATTTTTCATG-A-TTTAAGGAC
1 ATTTATG-TA-ATTTCATGCATTTTAGGGAC
* *
301074 -TATCATGTAATTTCATGCATTTTAGGGTC
1 AT-TTATGTAATTTCATGCATTTTAGGGAC
301103 ATTTATGT
1 ATTTATGT
301111 TTTTTACATA
Statistics
Matches: 49, Mismatches: 10, Indels: 13
0.68 0.14 0.18
Matches are distributed among these distances:
27 7 0.14
28 8 0.16
29 23 0.47
30 4 0.08
31 7 0.14
ACGTcount: A:0.26, C:0.11, G:0.16, T:0.48
Consensus pattern (29 bp):
ATTTATGTAATTTCATGCATTTTAGGGAC
Found at i:301553 original size:76 final size:77
Alignment explanation
Indices: 301375--301558 Score: 205
Period size: 76 Copynumber: 2.4 Consensus size: 77
301365 TCGAATGGGT
* * * * * *
301375 TATTTCATTAATAAGTACATTAAAACCAAGTCTAAGGCCATGTGGCAACTTTCATTATTGAAACA
1 TATTTCAGTAAT-AGTACCTTAAAATCGAGTCTAAGGCCATGTGGCAACCTTCATTATCGAAACA
301440 TGTCCACAAAGGA
65 TGTCCACAAAGGA
* * * * *
301453 TATTTTAGTAATAATATCTTAAAATCGAGTCTAAGGTCATGTAGG-AACCTTCA-TATCGAAATA
1 TATTTCAGTAATAGTACCTTAAAATCGAGTCTAAGGCCATGT-GGCAACCTTCATTATCGAAACA
301516 TGTCCACTAAAGG-
65 TGTCCAC-AAAGGA
301529 TATTTC-GATAATAGTACCTTAAAATCGAGT
1 TATTTCAG-TAATAGTACCTTAAAATCGAGT
301559 TTAGGGTGCT
Statistics
Matches: 89, Mismatches: 14, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
75 1 0.01
76 40 0.45
77 36 0.40
78 12 0.13
ACGTcount: A:0.38, C:0.16, G:0.15, T:0.32
Consensus pattern (77 bp):
TATTTCAGTAATAGTACCTTAAAATCGAGTCTAAGGCCATGTGGCAACCTTCATTATCGAAACAT
GTCCACAAAGGA
Found at i:303859 original size:13 final size:13
Alignment explanation
Indices: 303841--303867 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
303831 ATATTATGCT
303841 TTGTATCGATACA
1 TTGTATCGATACA
303854 TTGTATCGATACA
1 TTGTATCGATACA
303867 T
1 T
303868 ACTCATTATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:303901 original size:20 final size:19
Alignment explanation
Indices: 303852--303906 Score: 92
Period size: 19 Copynumber: 2.8 Consensus size: 19
303842 TGTATCGATA
303852 CATTGTATCGATACATACT
1 CATTGTATCGATACATACT
*
303871 CATTATATCGATACATACT
1 CATTGTATCGATACATACT
303890 CACTTGTATCGATACAT
1 CA-TTGTATCGATACAT
303907 GAAACTGGCA
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
19 20 0.61
20 13 0.39
ACGTcount: A:0.33, C:0.22, G:0.09, T:0.36
Consensus pattern (19 bp):
CATTGTATCGATACATACT
Found at i:311609 original size:28 final size:27
Alignment explanation
Indices: 311557--311609 Score: 70
Period size: 28 Copynumber: 1.9 Consensus size: 27
311547 ATTTGGTATC
* **
311557 TAACAAAGGGGGAGAAATTTTTTTTGA
1 TAACAAAGGGGGAGAAAATCATTTTGA
311584 TAACAAAAGGGGGAGAAAATCATTTT
1 TAAC-AAAGGGGGAGAAAATCATTTT
311610 AAAAGAGAGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
27 4 0.18
28 18 0.82
ACGTcount: A:0.42, C:0.06, G:0.25, T:0.28
Consensus pattern (27 bp):
TAACAAAGGGGGAGAAAATCATTTTGA
Found at i:311671 original size:21 final size:21
Alignment explanation
Indices: 311623--311664 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
311613 AGAGAGCTTT
311623 AATTATTTTATCAAGGGGGAG
1 AATTATTTTATCAAGGGGGAG
*
311644 AATTATTTTATTAAGGGGGAG
1 AATTATTTTATCAAGGGGGAG
311665 TTTTATTAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.33, C:0.02, G:0.29, T:0.36
Consensus pattern (21 bp):
AATTATTTTATCAAGGGGGAG
Found at i:312313 original size:13 final size:13
Alignment explanation
Indices: 312295--312346 Score: 95
Period size: 13 Copynumber: 4.0 Consensus size: 13
312285 TTATGCTTTG
312295 TATCGATACATTA
1 TATCGATACATTA
*
312308 TATCGATGCATTA
1 TATCGATACATTA
312321 TATCGATACATTA
1 TATCGATACATTA
312334 TATCGATACATTA
1 TATCGATACATTA
312347 AGCTGTGTAT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 37 1.00
ACGTcount: A:0.37, C:0.15, G:0.10, T:0.38
Consensus pattern (13 bp):
TATCGATACATTA
Found at i:312370 original size:13 final size:13
Alignment explanation
Indices: 312352--312376 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
312342 CATTAAGCTG
312352 TGTATCGATACAA
1 TGTATCGATACAA
312365 TGTATCGATACA
1 TGTATCGATACA
312377 TACTCATTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:312393 original size:19 final size:20
Alignment explanation
Indices: 312365--312408 Score: 72
Period size: 19 Copynumber: 2.2 Consensus size: 20
312355 ATCGATACAA
*
312365 TGTATCGATACATACTCA-T
1 TGTATAGATACATACTCATT
312384 TGTATAGATACATACTCATT
1 TGTATAGATACATACTCATT
312404 TGTAT
1 TGTAT
312409 CAATACATGA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 17 0.74
20 6 0.26
ACGTcount: A:0.32, C:0.16, G:0.11, T:0.41
Consensus pattern (20 bp):
TGTATAGATACATACTCATT
Found at i:312414 original size:20 final size:19
Alignment explanation
Indices: 312365--312416 Score: 70
Period size: 19 Copynumber: 2.7 Consensus size: 19
312355 ATCGATACAA
*
312365 TGTATCGATACATACTCAT
1 TGTATCAATACATACTCAT
312384 TGTAT-AGATACATACTCATT
1 TGTATCA-ATACATACTCA-T
312404 TGTATCAATACAT
1 TGTATCAATACAT
312417 GAAACTGGCA
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
19 16 0.55
20 12 0.41
21 1 0.03
ACGTcount: A:0.35, C:0.17, G:0.10, T:0.38
Consensus pattern (19 bp):
TGTATCAATACATACTCAT
Found at i:315807 original size:27 final size:26
Alignment explanation
Indices: 315777--315827 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
315767 GCCTTTTAAA
* *
315777 AATTAAGTGATAAATTGACCCAAATGC
1 AATTAAATGA-AAAATGACCCAAATGC
*
315804 AATTAAATGAAAAATGGCCCAAAT
1 AATTAAATGAAAAATGACCCAAAT
315828 AAATAGATTA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 12 0.57
27 9 0.43
ACGTcount: A:0.49, C:0.14, G:0.14, T:0.24
Consensus pattern (26 bp):
AATTAAATGAAAAATGACCCAAATGC
Found at i:316242 original size:21 final size:21
Alignment explanation
Indices: 316212--316260 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 21
316202 AACTTGTATC
*
316212 GATACATTGAT-GAAATGCATG
1 GATACCTTGATAG-AATGCATG
* *
316233 GATACCTTGATAGAATGTATT
1 GATACCTTGATAGAATGCATG
316254 GATACCT
1 GATACCT
316261 AAGTAAGATG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 23 0.96
22 1 0.04
ACGTcount: A:0.35, C:0.12, G:0.20, T:0.33
Consensus pattern (21 bp):
GATACCTTGATAGAATGCATG
Found at i:318604 original size:20 final size:20
Alignment explanation
Indices: 318560--318617 Score: 73
Period size: 20 Copynumber: 3.0 Consensus size: 20
318550 ATTTCAACGA
***
318560 TTTGTATCGATACATAAAGT
1 TTTGTATCGATACATATTTT
*
318580 GTTGTATCGATACATATTTT
1 TTTGTATCGATACATATTTT
318600 TTTGTATCGATACA-ATTT
1 TTTGTATCGATACATATTT
318618 AAGCTACTGC
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
19 4 0.12
20 29 0.88
ACGTcount: A:0.29, C:0.10, G:0.14, T:0.47
Consensus pattern (20 bp):
TTTGTATCGATACATATTTT
Found at i:318746 original size:52 final size:52
Alignment explanation
Indices: 318690--318818 Score: 222
Period size: 52 Copynumber: 2.5 Consensus size: 52
318680 CACTGATCTT
* *
318690 TGTATCGATACATGCAAGCAAATTTGCCCAGATGTATCGATACATTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
*
318742 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
*
318794 TGTATCGATACATGCAGGTAAATTT
1 TGTATCGATACATGCAGGCAAATTT
318819 TCATATTTCG
Statistics
Matches: 73, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
52 73 1.00
ACGTcount: A:0.36, C:0.17, G:0.17, T:0.30
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
Found at i:325995 original size:15 final size:16
Alignment explanation
Indices: 325975--326004 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
325965 GTTCTTTTCA
325975 AAACAAAAAA-AAAAG
1 AAACAAAAAACAAAAG
325990 AAACAAAAAACAAAA
1 AAACAAAAAACAAAA
326005 ACAAAAAGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.87, C:0.10, G:0.03, T:0.00
Consensus pattern (16 bp):
AAACAAAAAACAAAAG
Found at i:327050 original size:34 final size:34
Alignment explanation
Indices: 327006--327333 Score: 347
Period size: 34 Copynumber: 9.7 Consensus size: 34
326996 ATTTTGTCTC
* *
327006 AAAGTCCACAACTTCGTGGCACTTTTTTCTTTTT
1 AAAGCCCACAACTCCGTGGCACTTTTTTCTTTTT
* * *
327040 AAAGCCCACAACTCTGTGGCACTCTTTTTCCTTCT
1 AAAGCCCACAACTCCGTGGCACT-TTTTTCTTTTT
*
327075 -AAGCCCACAACTCCGTGGCAC------CCTTTT
1 AAAGCCCACAACTCCGTGGCACTTTTTTCTTTTT
* *
327102 -AAGCCCACAACTCCATGGCACTTTTTTCATCTTT
1 AAAGCCCACAACTCCGTGGCACTTTTTTC-TTTTT
* * *
327136 -AAGTCCACAACACCGTGGCACCTTTTTCTTTTT
1 AAAGCCCACAACTCCGTGGCACTTTTTTCTTTTT
*
327169 AAAGCCCACAACTCCGTGGCACCTTTTTT-TATTT
1 AAAGCCCACAACTCCGTGGCA-CTTTTTTCTTTTT
*
327203 AAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTC
1 AAAGCCCACAACTCCGTGGCACT-TTTTT--CTTTTT
*
327240 AAAGCCCACAACTCTGTGGCACTTTTTTC-TTTT
1 AAAGCCCACAACTCCGTGGCACTTTTTTCTTTTT
*
327273 AAAGCCCACAACTCCGTGGCACTCTTTTTCCGTTTT
1 AAAGCCCACAACTCCGTGGCACT-TTTTT-CTTTTT
*
327309 -AAGTCCACAACTCCGTGGCATCTTT
1 AAAGCCCACAACTCCGTGGCA-CTTT
327334 CTCCCTTCCT
Statistics
Matches: 251, Mismatches: 25, Indels: 35
0.81 0.08 0.11
Matches are distributed among these distances:
27 25 0.10
33 32 0.13
34 121 0.48
35 37 0.15
36 11 0.04
37 25 0.10
ACGTcount: A:0.21, C:0.32, G:0.12, T:0.34
Consensus pattern (34 bp):
AAAGCCCACAACTCCGTGGCACTTTTTTCTTTTT
Found at i:327095 original size:68 final size:67
Alignment explanation
Indices: 326970--327353 Score: 362
Period size: 68 Copynumber: 5.7 Consensus size: 67
326960 CTTCAAATAC
* * * * * *
326970 CTTTTTAAAGTCCACGACTCAGTGGCA-TTTTGTC-TC-AAAGTCCACAACTTCGTGGCACTTTT
1 CTTTTTAAAGCCCACAACTCCGTGGCACTTTTTTCTTCTAAAGCCCACAACTCCGTGGCACTTTT
327032 TT
66 TT
*
327034 CTTTTTAAAGCCCACAACTCTGTGGCACTCTTTTTCCTTCT-AAGCCCACAACTCCGTGGCAC--
1 CTTTTTAAAGCCCACAACTCCGTGGCACT-TTTTT-CTTCTAAAGCCCACAACTCCGTGGCACTT
327096 ----
64 TTTT
* * * * * * *
327096 CCTTTT-AAGCCCACAACTCCATGGCACTTTTTTCATCTTTAAGTCCACAACACCGTGGCACCTT
1 CTTTTTAAAGCCCACAACTCCGTGGCACTTTTTTCTTC-TAAAGCCCACAACTCCGTGGCACTTT
327160 TTT
65 TTT
*
327163 CTTTTTAAAGCCCACAACTCCGTGGCACCTTTTTT-TATTTAAAGCCCACAACTCCGTGGCACTC
1 CTTTTTAAAGCCCACAACTCCGTGGCA-CTTTTTTCT-TCTAAAGCCCACAACTCCGTGGCACT-
327227 TTTTT
63 TTTTT
* * *
327232 CCCTTTTCAAAGCCCACAACTCTGTGGCACTTTTTTCTTTTAAAGCCCACAACTCCGTGGCACTC
1 --CTTTTTAAAGCCCACAACTCCGTGGCACTTTTTTCTTCTAAAGCCCACAACTCCGTGGCACT-
327297 TTTTT
63 TTTTT
* * **
327302 CCGTTTT-AAGTCCACAACTCCGTGGCATCTTTCTCCCTTCCTAAAGCCCACA
1 -CTTTTTAAAGCCCACAACTCCGTGGCA-CTTT-TTTCTT-CTAAAGCCCACA
327354 CAAGTCGGTG
Statistics
Matches: 268, Mismatches: 29, Indels: 39
0.80 0.09 0.12
Matches are distributed among these distances:
59 3 0.01
60 6 0.02
61 39 0.15
62 5 0.02
64 24 0.09
65 1 0.00
66 4 0.01
67 6 0.02
68 78 0.29
69 22 0.08
70 43 0.16
71 37 0.14
ACGTcount: A:0.21, C:0.32, G:0.12, T:0.34
Consensus pattern (67 bp):
CTTTTTAAAGCCCACAACTCCGTGGCACTTTTTTCTTCTAAAGCCCACAACTCCGTGGCACTTTT
TT
Found at i:327128 original size:27 final size:27
Alignment explanation
Indices: 327069--327122 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 27
327059 CACTCTTTTT
* *
327069 CCTTCTAAGCCCACAACTCCGTGGCAC
1 CCTTTTAAGCCCACAACTCCATGGCAC
327096 CCTTTTAAGCCCACAACTCCATGGCAC
1 CCTTTTAAGCCCACAACTCCATGGCAC
327123 TTTTTTCATC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.24, C:0.43, G:0.13, T:0.20
Consensus pattern (27 bp):
CCTTTTAAGCCCACAACTCCATGGCAC
Found at i:327374 original size:104 final size:102
Alignment explanation
Indices: 327006--327384 Score: 261
Period size: 95 Copynumber: 3.7 Consensus size: 102
326996 ATTTTGTCTC
* * * * * * *
327006 AAAGTCCACAACTTCGTGGCACT-TTT-T-TCTTTTTAAAGCCCACAACTCTGTGGCACTCTTTT
1 AAAGCCCACAACTCCGTGGCACTCTTTCTCCCTTCTCAAAGCCCACAACTCGGTGGCACTCTTCT
*
327068 TCCTTCTAAGCCCACAACTCCGTGGCA-C-----CC-TTT
66 T--TT-AAAGCCCACAACTCCGTGGCACCTTTTTCCATTT
* * * * * * * *
327101 TAAGCCCACAACTCCATGGCACT-TTTTTCATCTT-T--AAGTCCACAACACCGTGGCACCTTTT
1 AAAGCCCACAACTCCGTGGCACTCTTTCTC-CCTTCTCAAAGCCCACAACTCGGTGGCA-C-TCT
**
327162 TCTTTTTAAAGCCCACAACTCCGTGGCACCTTTTTTTATTT
63 TC-TTTTAAAGCCCACAACTCCGTGGCACCTTTTTCCATTT
* * * *
327203 AAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTCAAAGCCCACAACTCTGTGGCACTTTTTT
1 AAAGCCCACAACTCCGTGGCACTCTTTCTCCCTTCTCAAAGCCCACAACTCGGTGGCAC--TCTT
*
327268 CTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCGTTT
64 CTTTTAAAGCCCACAACTCCGTGGCAC-CTTTTTCCATTT
* * *
327308 TAAGTCCACAACTCCGTGGCA-TCTTTCTCCCTTC-CTAAAGCCCACACAAGTCGGTGGCAAC-C
1 AAAGCCCACAACTCCGTGGCACTCTTTCTCCCTTCTC-AAAG-CC-CACAACTCGGTGGC-ACTC
**
327370 TTCTTCCAAAGCCCA
62 TTCTTTTAAAGCCCA
327385 AACAAGTCGG
Statistics
Matches: 231, Mismatches: 30, Indels: 37
0.78 0.10 0.12
Matches are distributed among these distances:
95 59 0.26
96 5 0.02
97 4 0.02
98 6 0.03
102 27 0.12
103 8 0.03
104 55 0.24
105 53 0.23
106 12 0.05
107 2 0.01
ACGTcount: A:0.22, C:0.33, G:0.12, T:0.32
Consensus pattern (102 bp):
AAAGCCCACAACTCCGTGGCACTCTTTCTCCCTTCTCAAAGCCCACAACTCGGTGGCACTCTTCT
TTTAAAGCCCACAACTCCGTGGCACCTTTTTCCATTT
Found at i:327381 original size:33 final size:35
Alignment explanation
Indices: 327338--327407 Score: 117
Period size: 33 Copynumber: 2.1 Consensus size: 35
327328 ATCTTTCTCC
*
327338 CTTCCTAAAGCCCACACAAGTCGGTGGCAA-CCTT
1 CTTCCTAAAGCCCAAACAAGTCGGTGGCAACCCTT
327372 CTTCC-AAAGCCCAAACAAGTCGGTGGCAACCCTT
1 CTTCCTAAAGCCCAAACAAGTCGGTGGCAACCCTT
327406 CT
1 CT
327408 AAGTCCAATA
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
33 23 0.68
34 11 0.32
ACGTcount: A:0.27, C:0.36, G:0.17, T:0.20
Consensus pattern (35 bp):
CTTCCTAAAGCCCAAACAAGTCGGTGGCAACCCTT
Found at i:327464 original size:49 final size:49
Alignment explanation
Indices: 327407--328451 Score: 1195
Period size: 49 Copynumber: 21.9 Consensus size: 49
327397 GCAACCCTTC
* * *
327407 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTACCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTATCTT
* *
327456 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTATCTT
* * * *
327505 TAAGACCAATGTAGCTGGCCTTGAATCAGCACATTGGCACC-TCACCTC
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTATCTT
*
327553 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCT-TCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTT-TATCTT
327602 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACC----TC--
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTATCTT
*
327645 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCT-TCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTT-TATCTT
*
327694 TAAGTCCAATGTAGCTGGCCTTGAATCAGTACATTGGCACC----TC--
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTATCTT
* * * * *
327737 TAAGCCCAATATAGCTGGCCTTGAATTAGCATATTGGCACCTTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTATCTT
327786 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA-C-----CTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTATCTT
* * *
327829 TAAGTCCAATATCA-CTGGCCTTGAATCAGCATATTGGCACCTTTTCCACCTT
1 TAAGTCCAATGT-AGCTGGCCTTGAATCAGCACATTGGCACC-TTT--ATCTT
* *
327881 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTATCTT
* * *
327930 TAAGTCCAATGTAGTTGGCCTTGACTCAGCACATTGGCACCTTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTATCTT
* * * * *
327979 TAAGACCAATGTAGCTGGCCGTGAATCAGCACATTGGCACC-TCACCTC
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTATCTT
*
328027 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCT-TCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTT-TATCTT
* *
328076 TAAGTCCAATGTAGCTGGCATTGAATTAGCACATTGGCACC----TC--
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTATCTT
*
328119 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCT-TCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTT-TATCTT
*
328168 TAAGTCCAATGTAGCTAGCCTTGAATCAGCACATTGGCACC----TC--
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTATCTT
* * ** *
328211 TAAGCCCAATATAGCTGGCCTTGAATCAGCATGTTGGCACCTTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTATCTT
**
328260 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGG------TGCCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTATCTT
* * * * *
328303 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACATTTTCCACCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAC-CTTT--ATCTT
* *
328355 TAAGTCCAATTTAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACC-TTT--ATCTT
* *
328407 TAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTGACATCCTTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA-CCTTT
328452 TTCTCATCTT
Statistics
Matches: 869, Mismatches: 77, Indels: 97
0.83 0.07 0.09
Matches are distributed among these distances:
43 225 0.26
44 2 0.00
45 8 0.01
47 8 0.01
48 87 0.10
49 401 0.46
50 1 0.00
51 4 0.00
52 131 0.15
53 2 0.00
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.31
Consensus pattern (49 bp):
TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTATCTT
Found at i:327692 original size:92 final size:92
Alignment explanation
Indices: 327451--328396 Score: 1261
Period size: 92 Copynumber: 10.0 Consensus size: 92
327441 TGGCACCTTT
* * *
327451 ACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTT-TATCTTTAAGACCAAT
1 ACCTCTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCT-TCTTTAAGTCCAAT
327515 GTAGCTGGCCTTGAATCAGCACATTGGCACCTC
65 GTAGCTGGCCTTGAATCAGCACATTGG-----C
* *
327548 ACCTCTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCTTCTTTAAGTCCAATG
1 ACCTCTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCTTCTTTAAGTCCAATG
327613 TAGCTGGCCTTGAATCAGCACATTGGC
66 TAGCTGGCCTTGAATCAGCACATTGGC
* *
327640 ACCTCTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCTTCTTTAAGTCCAATG
1 ACCTCTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCTTCTTTAAGTCCAATG
*
327705 TAGCTGGCCTTGAATCAGTACATTGGC
66 TAGCTGGCCTTGAATCAGCACATTGGC
* * * *
327732 ACCTCTAAGCCCAATATAGCTGGCCTTGAATTAGCATATTGGCACCTTCATCTTTAAGTCCAATG
1 ACCTCTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCTTCTTTAAGTCCAATG
327797 TAGCTGGCCTTGAATCAGCACATTGGC
66 TAGCTGGCCTTGAATCAGCACATTGGC
* *
327824 ACCTTTAAGTCCAATATCA-CTGGCCTTGAATCAGCATATTGGCACCTT-TTCCACCTTTAAGTC
1 ACCTCTAAGTCCAATAT-AGCTGGCCTTGAATCAGCACATTGGCACCTTCTT----CTTTAAGTC
* *
327887 CAATATAGCTGGCCTTGAATCAGCATATTGGC
61 CAATGTAGCTGGCCTTGAATCAGCACATTGGC
* * * * *
327919 ACCTTTATCTTTAAGTCCAATGTAGTTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGA
1 ACC----TC--TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCTTCTTTAAGT
*
327984 CCAATGTAGCTGGCCGTGAATCAGCACATTGGCACCTC
60 CCAATGTAGCTGGCCTTGAATCAGCACATTGG-----C
* *
328022 ACCTCTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCTTCTTTAAGTCCAATG
1 ACCTCTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCTTCTTTAAGTCCAATG
* *
328087 TAGCTGGCATTGAATTAGCACATTGGC
66 TAGCTGGCCTTGAATCAGCACATTGGC
* *
328114 ACCTCTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCTTCTTTAAGTCCAATG
1 ACCTCTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCTTCTTTAAGTCCAATG
*
328179 TAGCTAGCCTTGAATCAGCACATTGGC
66 TAGCTGGCCTTGAATCAGCACATTGGC
* ** *
328206 ACCTCTAAGCCCAATATAGCTGGCCTTGAATCAGCATGTTGGCACCTTCATCTTTAAGTCCAATG
1 ACCTCTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCTTCTTTAAGTCCAATG
*
328271 TAGCTGGCCTTGAATCAGCACATTGGT
66 TAGCTGGCCTTGAATCAGCACATTGGC
* * * * *
328298 GCCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACATT-TTCCACCTTTAAGTCC
1 ACCTCTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCTT----CTTTAAGTCC
* *
328362 AATTTAGCTGGCCTTGAATCAGCATATTGGC
62 AATGTAGCTGGCCTTGAATCAGCACATTGGC
328393 ACCT
1 ACCT
328397 TTTCCATCTT
Statistics
Matches: 769, Mismatches: 57, Indels: 48
0.88 0.07 0.05
Matches are distributed among these distances:
91 2 0.00
92 436 0.57
93 1 0.00
95 83 0.11
97 164 0.21
98 37 0.05
99 3 0.00
100 1 0.00
101 37 0.05
102 1 0.00
103 4 0.01
ACGTcount: A:0.25, C:0.27, G:0.18, T:0.30
Consensus pattern (92 bp):
ACCTCTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCTTCTTTAAGTCCAATG
TAGCTGGCCTTGAATCAGCACATTGGC
Found at i:327828 original size:21 final size:21
Alignment explanation
Indices: 327804--327871 Score: 50
Period size: 21 Copynumber: 3.2 Consensus size: 21
327794 ATGTAGCTGG
327804 CCTTGAATCAGCACATTGGCA
1 CCTTGAATCAGCACATTGGCA
* ** *
327825 CCTTTAAGTCCAATATCACTGG--
1 CCTTGAA-T-CAGCA-CATTGGCA
*
327847 CCTTGAATCAGCATATTGGCA
1 CCTTGAATCAGCACATTGGCA
327868 CCTT
1 CCTT
327872 TTCCACCTTT
Statistics
Matches: 33, Mismatches: 9, Indels: 10
0.63 0.17 0.19
Matches are distributed among these distances:
19 4 0.12
20 3 0.09
21 11 0.33
22 7 0.21
23 3 0.09
24 5 0.15
ACGTcount: A:0.26, C:0.28, G:0.16, T:0.29
Consensus pattern (21 bp):
CCTTGAATCAGCACATTGGCA
Found at i:328294 original size:474 final size:474
Alignment explanation
Indices: 327402--328717 Score: 1898
Period size: 474 Copynumber: 2.7 Consensus size: 474
327392 CGGTGGCAAC
* *
327402 CCTTCTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTACCTTTAAGTCCAATA
1 CCTT-TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATG
* * *
327467 TAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGACCAATGTAGCTGGCCTTGAATC
65 TAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGACCAATGTAGCTGGCCGTGAATC
327532 AGCACATTGGCACCTCACCTCTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTC
130 AGCACATTGGCACCTCACCTCTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTC
*
327597 TTCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTCTAAGTCCAATGTAGCTG
195 TTCTTTAAGTCCAATGTAGCTGGCATTGAATCAGCACATTGGCACCTCTAAGTCCAATGTAGCTG
* *
327662 GCCTTGACTCAGCACATTGGCACCTTCTTCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGTACA
260 GCCTTGACTCAGCACATTGGCACCTTCTTCTTTAAGTCCAATGTAGCTAGCCTTGAATCAGCACA
*
327727 TTGGCACCTCTAAGCCCAATATAGCTGGCCTTGAATTAGCATATTGGCACCTTCATCTTTAAGTC
325 TTGGCACCTCTAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTC
327792 CAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCACTGGCCTTGAATCA
390 CAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCACTGGCCTTGAATCA
*
327857 GCATATTGGCACCTTTTCCA
455 GCATATTGGCACATTTTCCA
327877 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGT
1 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGT
* *
327942 AGTTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGACCAATGTAGCTGGCCGTGAATCA
66 AGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGACCAATGTAGCTGGCCGTGAATCA
328007 GCACATTGGCACCTCACCTCTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCT
131 GCACATTGGCACCTCACCTCTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCT
*
328072 TCTTTAAGTCCAATGTAGCTGGCATTGAATTAGCACATTGGCACCTCTAAGTCCAATGTAGCTGG
196 TCTTTAAGTCCAATGTAGCTGGCATTGAATCAGCACATTGGCACCTCTAAGTCCAATGTAGCTGG
328137 CCTTGACTCAGCACATTGGCACCTTCTTCTTTAAGTCCAATGTAGCTAGCCTTGAATCAGCACAT
261 CCTTGACTCAGCACATTGGCACCTTCTTCTTTAAGTCCAATGTAGCTAGCCTTGAATCAGCACAT
*
328202 TGGCACCTCTAAGCCCAATATAGCTGGCCTTGAATCAGCATGTTGGCACCTTCATCTTTAAGTCC
326 TGGCACCTCTAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCC
** *
328267 AATGTAGCTGGCCTTGAATCAGCACATTGGTGCCTTTAAGTCCAATATCGCTGGCCTTGAATCAG
391 AATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCACTGGCCTTGAATCAG
328332 CATATTGGCACATTTTCCA
456 CATATTGGCACATTTTCCA
* *
328351 CCTTTAAGTCCAATTTAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTTCAA
1 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACC-TTT--ATCTTTAAGTCCAA
* * * *
328416 TGTAGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCTCATCTTTAAG-CCTAATATCGTTGG
63 TGTAGCTGGCCTTGAATCAGCACATTGGCA-CC----T-TCATCTTTAAGACC-AATGTAGCTGG
* * *
328480 CCGTGAATCAACAAATTGGCATCTTTATCACTTTTCTCATCTTCATCTTTAAGTCCAATGTCGCT
121 CCGTGAATCAGCACATTGG---------CAC----CTCA-C--C-TC--TAAGTCCAATGTAGCT
* * * * *
328545 GGCCTTGAATCAGCACATTGGCA-CTTTTATCTTTAAGTCCAATATCGCTGGCTTTGAATCAGCA
167 GGCCTTGACTCAGCACATTGGCACCTTCT-TCTTTAAGTCCAATGTAGCTGGCATTGAATCAGCA
* * * *
328609 TATTGGCACCTTTTTCACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTT
231 CATTGGCACC----T---C--TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACC--T
* *
328674 TCCATCTTTAAGTTCAATGTAGCTAGCCTTGAATCAGCACATTG
285 T-CTTCTTTAAGTCCAATGTAGCTAGCCTTGAATCAGCACATTG
328718 ACATCCCTTT
Statistics
Matches: 759, Mismatches: 40, Indels: 45
0.90 0.05 0.05
Matches are distributed among these distances:
474 497 0.65
475 7 0.01
477 40 0.05
478 2 0.00
482 3 0.00
483 36 0.05
492 3 0.00
496 4 0.01
497 1 0.00
499 1 0.00
500 2 0.00
501 4 0.01
502 77 0.10
506 1 0.00
509 1 0.00
511 38 0.05
513 2 0.00
514 40 0.05
ACGTcount: A:0.25, C:0.26, G:0.17, T:0.32
Consensus pattern (474 bp):
CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGT
AGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGACCAATGTAGCTGGCCGTGAATCA
GCACATTGGCACCTCACCTCTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCT
TCTTTAAGTCCAATGTAGCTGGCATTGAATCAGCACATTGGCACCTCTAAGTCCAATGTAGCTGG
CCTTGACTCAGCACATTGGCACCTTCTTCTTTAAGTCCAATGTAGCTAGCCTTGAATCAGCACAT
TGGCACCTCTAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCC
AATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCACTGGCCTTGAATCAG
CATATTGGCACATTTTCCA
Found at i:328336 original size:22 final size:22
Alignment explanation
Indices: 328273--328336 Score: 53
Period size: 22 Copynumber: 3.0 Consensus size: 22
328263 GTCCAATGTA
* *
328273 GCTGGCCTTGAATCAGCACATT
1 GCTGGCCTTGAATCAGCATATC
* *
328295 GGT-GCCTTTAAGTC--CAATATC
1 GCTGGCCTTGAA-TCAGC-ATATC
328316 GCTGGCCTTGAATCAGCATAT
1 GCTGGCCTTGAATCAGCATAT
328337 TGGCACATTT
Statistics
Matches: 31, Mismatches: 6, Indels: 10
0.66 0.13 0.21
Matches are distributed among these distances:
20 1 0.03
21 14 0.45
22 15 0.48
23 1 0.03
ACGTcount: A:0.23, C:0.25, G:0.22, T:0.30
Consensus pattern (22 bp):
GCTGGCCTTGAATCAGCATATC
Found at i:328596 original size:49 final size:51
Alignment explanation
Indices: 328521--328788 Score: 308
Period size: 52 Copynumber: 5.2 Consensus size: 51
328511 TTTTCTCATC
* *
328521 TTCATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCA-CTT
1 TTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTT
*
328571 TT-ATCTTTAAGTCCAATATCGCTGGCTTTGAATCAGCATATTGGCACCTTT
1 TTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACC-TT
* *
328622 TTCACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTT
1 TTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTT
* * * * * *
328673 TTCCATCTTTAAGTTCAATGTAGCTAGCCTTGAATCAGCACATTGACATCCCTTT
1 TT-CATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCA--CC-TT
* * * * *
328728 TCTCATCTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTGGCATCTT
1 T-TCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTT
328780 TATCA-CTTT
1 T-TCATCTTT
328789 TCTCATCTTC
Statistics
Matches: 186, Mismatches: 24, Indels: 15
0.83 0.11 0.07
Matches are distributed among these distances:
49 41 0.22
50 3 0.02
51 12 0.06
52 88 0.47
53 1 0.01
54 2 0.01
55 38 0.20
56 1 0.01
ACGTcount: A:0.24, C:0.25, G:0.15, T:0.36
Consensus pattern (51 bp):
TTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTT
Found at i:328630 original size:275 final size:274
Alignment explanation
Indices: 328251--328868 Score: 1075
Period size: 275 Copynumber: 2.3 Consensus size: 274
328241 ATGTTGGCAC
* **
328251 CTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGG-----TGCCTTTAAGTCCA
1 CTTCATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACTTTATCTTTAAGTCCA
*
328311 ATATCGCTGGCCTTGAATCAGCATATTGGCACATTTTCCACCTTTAAGTCCAATTTAGCTGGCCT
66 ATATCGCTGGCCTTGAATCAGCATATTGGCACATTTTCCACCTTTAAGTCCAATATAGCTGGCCT
*
328376 TGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACAT
131 TGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTTCAATGTAGCTAGCCTTGAATCAGCACAT
* *
328441 TGACATCCTTTTTCTCATCTTTAAGCCTAATATCGTTGGCCGTGAATCAACAAATTGGCATCTTT
196 TGACATCCCTTTTCTCATCTTTAAGCCCAATATCGTTGGCCGTGAATCAACAAATTGGCATCTTT
328506 ATCACTTTTCTCAT
261 ATCACTTTTCTCAT
328520 CTTCATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACTTTTATCTTTAAGTCC
1 CTTCATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCAC-TTTATCTTTAAGTCC
* * *
328585 AATATCGCTGGCTTTGAATCAGCATATTGGCACCTTTTTCACCTTTAAGTCCAATATAGCTGGCC
65 AATATCGCTGGCCTTGAATCAGCATATTGGCACATTTTCCACCTTTAAGTCCAATATAGCTGGCC
328650 TTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTTCAATGTAGCTAGCCTTGAATCAGCACA
130 TTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTTCAATGTAGCTAGCCTTGAATCAGCACA
*
328715 TTGACATCCCTTTTCTCATCTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTGGCATCTT
195 TTGACATCCCTTTTCTCATCTTTAAGCCCAATATCGTTGGCCGTGAATCAACAAATTGGCATCTT
328780 TATCACTTTTCTCAT
260 TATCACTTTTCTCAT
*
328795 CTTCATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTTATCTTTAAGTCT
1 CTTCATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCA-CTTTATCTTTAAGTCC
328860 AATATCGCT
65 AATATCGCT
328869 AGCCGCATAT
Statistics
Matches: 330, Mismatches: 12, Indels: 8
0.94 0.03 0.02
Matches are distributed among these distances:
269 45 0.14
275 284 0.86
276 1 0.00
ACGTcount: A:0.24, C:0.25, G:0.15, T:0.36
Consensus pattern (274 bp):
CTTCATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACTTTATCTTTAAGTCCA
ATATCGCTGGCCTTGAATCAGCATATTGGCACATTTTCCACCTTTAAGTCCAATATAGCTGGCCT
TGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTTCAATGTAGCTAGCCTTGAATCAGCACAT
TGACATCCCTTTTCTCATCTTTAAGCCCAATATCGTTGGCCGTGAATCAACAAATTGGCATCTTT
ATCACTTTTCTCAT
Found at i:328955 original size:169 final size:173
Alignment explanation
Indices: 328622--329013 Score: 426
Period size: 169 Copynumber: 2.3 Consensus size: 173
328612 TGGCACCTTT
* * *
328622 TTCACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGT
1 TTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTT-CATCTTTAAGT
* *
328687 TCAATGTAGCTAGCCTTGAATCAGCACATTGACATCCCTTTTCTCATCTTTAAGCCCAATATCGT
65 TCAATATAGCTAGCC-TGAATCAGCACATTGACATCCCTTTTCTCATCTCTAAGCCCAATATCGT
* * *
328752 TGGCCGTGAATCAACATATTGGCATCTTTATCACTTTTC-TCATC
129 TGGCCATAAATCAACATATTGGCATCTTTATCACTCTTCATCATC
*
328796 TTCATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACC-TTT-ATCTTTAAG-T
1 TTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTTCATCTTTAAGTT
* ** * ** *
328858 CTAATATCGCTAGCC-GCATATTGGCTC-TT-TTATCCTTTTTCTCATCTCT-AGACCCAATATC
66 C-AATATAGCTAGCCTG-A-ATCAGCACATTGACATCCCTTTTCTCATCTCTAAG-CCCAATATC
* * *
328919 GTTGGCCATAAATCAACGTATTGGTCCT-TTTATCACTCTTCATCCTC
127 GTTGGCCATAAATCAACATATTGG-CATCTTTATCACTCTTCATCATC
* * * * *
328966 ATCATCTTTAAGTCCAGTGTTA-CAGGCCTTGAATCTGCACAGTGGCAC
1 TTCATCTTTAAGTCCAATG-TAGCTGGCCTTGAATCAGCACATTGGCAC
329014 ATTTCAAAAC
Statistics
Matches: 186, Mismatches: 25, Indels: 18
0.81 0.11 0.08
Matches are distributed among these distances:
168 2 0.01
169 59 0.32
170 51 0.27
171 26 0.14
173 3 0.02
174 45 0.24
ACGTcount: A:0.23, C:0.26, G:0.14, T:0.36
Consensus pattern (173 bp):
TTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTTCATCTTTAAGTT
CAATATAGCTAGCCTGAATCAGCACATTGACATCCCTTTTCTCATCTCTAAGCCCAATATCGTTG
GCCATAAATCAACATATTGGCATCTTTATCACTCTTCATCATC
Found at i:329642 original size:20 final size:20
Alignment explanation
Indices: 329598--329655 Score: 73
Period size: 20 Copynumber: 3.0 Consensus size: 20
329588 ATTTCAACGA
***
329598 TTTGTATCGATACATAAAGT
1 TTTGTATCGATACATATTTT
*
329618 GTTGTATCGATACATATTTT
1 TTTGTATCGATACATATTTT
329638 TTTGTATCGATACA-ATTT
1 TTTGTATCGATACATATTT
329656 AAGCTACTGC
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
19 4 0.12
20 29 0.88
ACGTcount: A:0.29, C:0.10, G:0.14, T:0.47
Consensus pattern (20 bp):
TTTGTATCGATACATATTTT
Found at i:329784 original size:52 final size:52
Alignment explanation
Indices: 329728--329856 Score: 213
Period size: 52 Copynumber: 2.5 Consensus size: 52
329718 CACTGATCTT
* * *
329728 TGTATCGATACATGCAAGCAAATTTGCCCAGATGTATCGATACATTGTAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
*
329780 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
*
329832 TGTATCGATACATGCAGGTAAATTT
1 TGTATCGATACATGCAGGCAAATTT
329857 TCATATTTCG
Statistics
Matches: 72, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 72 1.00
ACGTcount: A:0.35, C:0.17, G:0.18, T:0.30
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
Found at i:335045 original size:77 final size:78
Alignment explanation
Indices: 334901--335154 Score: 180
Period size: 77 Copynumber: 3.3 Consensus size: 78
334891 ACCTTTAACA
* * ** * *
334901 ACATGTATTGACATGAAAGTTCCCATATCACTTTAAAGACTAAATATTAATGCAGTAATACCTAA
1 ACATGTATTGACATGAAAGTTCCCACATAACCCTAAAGACTAAATATTAATGCAATAATACCCAA
334966 ATAATCCTAAAAG
66 ATAATCCTAAAAG
* * * * *
334979 ACATGTTTTGAGATGAAA-TTCCCACATAACCCTAAAGACTCAAAT-TTCATGTAATATTACCCA
1 ACATGTATTGACATGAAAGTTCCCACATAACCCTAAAGACT-AAATATTAATGCAATAATACCCA
* **
335042 AAT-ACCCATAAGGG
65 AATAATCC-TAAAAG
* * * * * * ** * * *
335056 ACATGTACTAAAATGAAAGTTACCACATGACCCT--AGGCTCGATATTAATGTAATATTACCTAA
1 ACATGTATTGACATGAAAGTTCCCACATAACCCTAAAGACTAAATATTAATGCAATAATACCCAA
* **
335119 ATAA-CCTTATGG
66 ATAATCCTAAAAG
*
335131 A-ATGTTTTGACATGAAAGTTCCCA
1 ACATGTATTGACATGAAAGTTCCCA
335155 TACAACTTTA
Statistics
Matches: 139, Mismatches: 32, Indels: 14
0.75 0.17 0.08
Matches are distributed among these distances:
74 18 0.13
75 7 0.05
76 28 0.20
77 53 0.38
78 33 0.24
ACGTcount: A:0.40, C:0.19, G:0.12, T:0.29
Consensus pattern (78 bp):
ACATGTATTGACATGAAAGTTCCCACATAACCCTAAAGACTAAATATTAATGCAATAATACCCAA
ATAATCCTAAAAG
Found at i:339764 original size:3 final size:3
Alignment explanation
Indices: 339708--339748 Score: 57
Period size: 3 Copynumber: 14.0 Consensus size: 3
339698 ATTTTACGTG
* *
339708 TTA TTA TTA TT- TTA TTT TTA TTA TTA TTA CTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
339749 GGATAATCAT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
2 2 0.06
3 31 0.94
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:340881 original size:13 final size:13
Alignment explanation
Indices: 340863--340887 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
340853 CATTATGCTT
340863 TGTATCGATACAA
1 TGTATCGATACAA
340876 TGTATCGATACA
1 TGTATCGATACA
340888 TGTTCATTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:340884 original size:33 final size:32
Alignment explanation
Indices: 340842--340906 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 32
340832 ACACTTTCAG
*
340842 ATGTATCGATACAT-TATGCTTTGTATCGATACA
1 ATGTATCGATACATGT-T-CATTGTATCGATACA
340875 ATGTATCGATACATGTTCATTGTATCGATACA
1 ATGTATCGATACATGTTCATTGTATCGATACA
340907 TGAACAAATA
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
32 14 0.47
33 15 0.50
34 1 0.03
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (32 bp):
ATGTATCGATACATGTTCATTGTATCGATACA
Found at i:340984 original size:20 final size:20
Alignment explanation
Indices: 340959--341009 Score: 68
Period size: 20 Copynumber: 2.5 Consensus size: 20
340949 CTATTGTTTT
*
340959 TATCGATACATGGCACAA-TG
1 TATCGATACAT-GAACAATTG
*
340979 TATCGATACATGAAGAATTG
1 TATCGATACATGAACAATTG
340999 TATCGATACAT
1 TATCGATACAT
341010 TGCCTCAAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
19 4 0.14
20 24 0.86
ACGTcount: A:0.37, C:0.16, G:0.18, T:0.29
Consensus pattern (20 bp):
TATCGATACATGAACAATTG
Found at i:347123 original size:20 final size:20
Alignment explanation
Indices: 347098--347150 Score: 61
Period size: 20 Copynumber: 2.6 Consensus size: 20
347088 TTTCAAAATA
347098 TATCGATACATTGAAATATG
1 TATCGATACATTGAAATATG
* *** *
347118 TATCGATACAATGTTCTTTG
1 TATCGATACATTGAAATATG
347138 TATCGATACATTG
1 TATCGATACATTG
347151 TGTCGATACA
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.32, C:0.13, G:0.15, T:0.40
Consensus pattern (20 bp):
TATCGATACATTGAAATATG
Found at i:347156 original size:13 final size:13
Alignment explanation
Indices: 347135--347174 Score: 62
Period size: 13 Copynumber: 3.1 Consensus size: 13
347125 ACAATGTTCT
347135 TTGTATCGATACA
1 TTGTATCGATACA
*
347148 TTGTGTCGATACA
1 TTGTATCGATACA
*
347161 ATGTATCGATACA
1 TTGTATCGATACA
347174 T
1 T
347175 GAGTTACTTT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.30, C:0.15, G:0.17, T:0.38
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:349884 original size:13 final size:13
Alignment explanation
Indices: 349866--349923 Score: 62
Period size: 13 Copynumber: 4.0 Consensus size: 13
349856 AATTTGGTCA
349866 TGTATCGATACAT
1 TGTATCGATACAT
349879 TGTATCGATACATCTTGT
1 TGTATCGATACA-----T
349897 ATGTATCGATACAT
1 -TGTATCGATACAT
349911 TGTATCGATACAT
1 TGTATCGATACAT
349924 CTTGTATGTA
Statistics
Matches: 39, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
13 25 0.64
14 1 0.03
18 1 0.03
19 12 0.31
ACGTcount: A:0.29, C:0.16, G:0.16, T:0.40
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:349903 original size:19 final size:19
Alignment explanation
Indices: 349879--349941 Score: 84
Period size: 19 Copynumber: 3.6 Consensus size: 19
349869 ATCGATACAT
349879 TGTATCGATACATCTTGTA
1 TGTATCGATACATCTTGTA
349898 TGTATCGATACA-----T-
1 TGTATCGATACATCTTGTA
349911 TGTATCGATACATCTTGTA
1 TGTATCGATACATCTTGTA
349930 TGTATCGATACA
1 TGTATCGATACA
349942 AAAAGTTAAG
Statistics
Matches: 38, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
13 12 0.32
14 1 0.03
18 1 0.03
19 24 0.63
ACGTcount: A:0.29, C:0.16, G:0.16, T:0.40
Consensus pattern (19 bp):
TGTATCGATACATCTTGTA
Found at i:349906 original size:32 final size:32
Alignment explanation
Indices: 349845--349941 Score: 160
Period size: 32 Copynumber: 3.0 Consensus size: 32
349835 TACAAGCCAA
349845 TGTATCGATACAAT-TTGGTCATGTATCGATACAT
1 TGTATCGATAC-ATCTT-GT-ATGTATCGATACAT
349879 TGTATCGATACATCTTGTATGTATCGATACAT
1 TGTATCGATACATCTTGTATGTATCGATACAT
349911 TGTATCGATACATCTTGTATGTATCGATACA
1 TGTATCGATACATCTTGTATGTATCGATACA
349942 AAAAGTTAAG
Statistics
Matches: 62, Mismatches: 0, Indels: 4
0.94 0.00 0.06
Matches are distributed among these distances:
32 45 0.73
33 4 0.06
34 13 0.21
ACGTcount: A:0.29, C:0.15, G:0.16, T:0.39
Consensus pattern (32 bp):
TGTATCGATACATCTTGTATGTATCGATACAT
Found at i:350041 original size:13 final size:13
Alignment explanation
Indices: 350023--350047 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
350013 ACATTTGGTC
350023 ATGTATCGATACA
1 ATGTATCGATACA
350036 ATGTATCGATAC
1 ATGTATCGATAC
350048 TGTGCATTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Done.