Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold302
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 555664
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.32
File 1 of 4
Found at i:3499 original size:1 final size:1
Alignment explanation
Indices: 3493--3606 Score: 102
Period size: 1 Copynumber: 114.0 Consensus size: 1
3483 GGCGTCCTCC
* * * ** ** *
3493 AAAAAAACAAAAAAAAAAAAAACAAAACAAAAAAAAAATGAAAAAAATGAAAAAATAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * * * * *
3558 ACAAAACAAAAAACAAAAAAAAAAAAAAAAACAAACAAAAACAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
3607 GGGGGTCCGG
Statistics
Matches: 87, Mismatches: 26, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
1 87 1.00
ACGTcount: A:0.88, C:0.08, G:0.02, T:0.03
Consensus pattern (1 bp):
A
Found at i:5377 original size:58 final size:59
Alignment explanation
Indices: 5264--5520 Score: 330
Period size: 58 Copynumber: 4.4 Consensus size: 59
5254 TTTCTTTTTC
* * **
5264 AGCCCACAAGTTAGTGGCACCCTTTTCAAAAGCCCACAAGTCAGTGGCATATTTTTCAAA
1 AGCCCACAAGTCAGTGGCAACC-TTTCAAAAGCCCACAAGTCAGTGGCACCTTTTTCAAA
*
5324 AGCCCACAAGTCAGTGGCAACCTTT-AAAAGCCCACAAGTTAGTGGCACCTTTTTCAAA
1 AGCCCACAAGTCAGTGGCAACCTTTCAAAAGCCCACAAGTCAGTGGCACCTTTTTCAAA
**
5382 AGCCCACAAGTCAGTGGCATATTTTTCAAAAGCCCACAAGTCAGTGGCAACC--TTT-AAA
1 AGCCCACAAGTCAGTGGCA-ACCTTTCAAAAGCCCACAAGTCAGTGGC-ACCTTTTTCAAA
* * **
5440 AGCCCACAAGTCAGTGGCAACC-TTC-AAAGCCCACAAATCAGTGGCACCCTTTTCCGA
1 AGCCCACAAGTCAGTGGCAACCTTTCAAAAGCCCACAAGTCAGTGGCACCTTTTTCAAA
*
5497 AGCCCACAAGTCGGTGGC-ACCTTT
1 AGCCCACAAGTCAGTGGCAACCTTT
5521 TCCATCTTTA
Statistics
Matches: 176, Mismatches: 14, Indels: 17
0.85 0.07 0.08
Matches are distributed among these distances:
54 3 0.02
55 19 0.11
56 9 0.05
57 21 0.12
58 71 0.40
59 10 0.06
60 40 0.23
61 3 0.02
ACGTcount: A:0.31, C:0.29, G:0.18, T:0.22
Consensus pattern (59 bp):
AGCCCACAAGTCAGTGGCAACCTTTCAAAAGCCCACAAGTCAGTGGCACCTTTTTCAAA
Found at i:5413 original size:88 final size:87
Alignment explanation
Indices: 5264--5520 Score: 387
Period size: 88 Copynumber: 3.0 Consensus size: 87
5254 TTTCTTTTTC
5264 AGCCCACAAGTTAGTGGCACCCTTTTCAAAAGCCCACAAGTCAGTGGCATATTTTTCAAAAGCCC
1 AGCCCACAAGTTAGTGGCA-CCTTTTCAAAAGCCCACAAGTCAGTGGCATATTTTTCAAAAGCCC
5329 ACAAGTCAGTGGCAACCTTTAAA
65 ACAAGTCAGTGGCAACCTTTAAA
5352 AGCCCACAAGTTAGTGGCACCTTTTTCAAAAGCCCACAAGTCAGTGGCATATTTTTCAAAAGCCC
1 AGCCCACAAGTTAGTGGCACC-TTTTCAAAAGCCCACAAGTCAGTGGCATATTTTTCAAAAGCCC
5417 ACAAGTCAGTGGCAACCTTTAAA
65 ACAAGTCAGTGGCAACCTTTAAA
* * *** **
5440 AGCCCACAAGTCAGTGGCAACC--TTC-AAAGCCCACAAATCAGTGGCACCCTTTTCCGAAGCCC
1 AGCCCACAAGTTAGTGGC-ACCTTTTCAAAAGCCCACAAGTCAGTGGCATATTTTTCAAAAGCCC
*
5502 ACAAGTCGGTGGC-ACCTTT
65 ACAAGTCAGTGGCAACCTTT
5521 TCCATCTTTA
Statistics
Matches: 159, Mismatches: 8, Indels: 8
0.91 0.05 0.05
Matches are distributed among these distances:
84 6 0.04
85 43 0.27
86 3 0.02
87 2 0.01
88 102 0.64
89 3 0.02
ACGTcount: A:0.31, C:0.29, G:0.18, T:0.22
Consensus pattern (87 bp):
AGCCCACAAGTTAGTGGCACCTTTTCAAAAGCCCACAAGTCAGTGGCATATTTTTCAAAAGCCCA
CAAGTCAGTGGCAACCTTTAAA
Found at i:5516 original size:30 final size:30
Alignment explanation
Indices: 5044--5522 Score: 365
Period size: 30 Copynumber: 16.1 Consensus size: 30
5034 TTCATCACCC
* ***
5044 TTCAAAAGTCCACAAGTCAGTGGCATTTTT
1 TTCAAAAGCCCACAAGTCAGTGGCACCCTT
***
5074 TTC-AAAGCCCACAAGTCAGTGGCAATTTT
1 TTCAAAAGCCCACAAGTCAGTGGCACCCTT
*
5103 TTCAAAAGCCCACAAGTCAGTGGCAACC--
1 TTCAAAAGCCCACAAGTCAGTGGCACCCTT
* *
5131 TTC-AAAGCCCACAAATCAATGGCACCCTT
1 TTCAAAAGCCCACAAGTCAGTGGCACCCTT
** * *
5160 TTCCGAAGCCCACAAGTCGGTGGCA-TCTT
1 TTCAAAAGCCCACAAGTCAGTGGCACCCTT
* * * * *
5189 TTCCAAAGTCCACAACTCCGTGGCACTCTTT
1 TTCAAAAGCCCACAAGTCAGTGGCAC-CCTT
** * * * **
5220 TTCTTTTGTAAGCTCACAACTCTA-TAGCACTTTTT
1 TTC----AAAAGCCCACAAGTC-AGTGGCAC-CCTT
*** *
5255 TTCTTTTTCAGCCCACAAGTTAGTGGCACCCTT
1 TTC---AAAAGCCCACAAGTCAGTGGCACCCTT
***
5288 TTCAAAAGCCCACAAGTCAGTGGCATATTT
1 TTCAAAAGCCCACAAGTCAGTGGCACCCTT
*
5318 TTCAAAAGCCCACAAGTCAGTGGCAACC-T
1 TTCAAAAGCCCACAAGTCAGTGGCACCCTT
* *
5347 TT-AAAAGCCCACAAGTTAGTGGCACCTTT
1 TTCAAAAGCCCACAAGTCAGTGGCACCCTT
***
5376 TTCAAAAGCCCACAAGTCAGTGGCATATTT
1 TTCAAAAGCCCACAAGTCAGTGGCACCCTT
*
5406 TTCAAAAGCCCACAAGTCAGTGGCAACC-T
1 TTCAAAAGCCCACAAGTCAGTGGCACCCTT
*
5435 TT-AAAAGCCCACAAGTCAGTGGCAACC--
1 TTCAAAAGCCCACAAGTCAGTGGCACCCTT
*
5462 TTC-AAAGCCCACAAATCAGTGGCACCCTT
1 TTCAAAAGCCCACAAGTCAGTGGCACCCTT
** *
5491 TTCCGAAGCCCACAAGTCGGTGGCA-CCTT
1 TTCAAAAGCCCACAAGTCAGTGGCACCCTT
5520 TTC
1 TTC
5523 CATCTTTAAG
Statistics
Matches: 374, Mismatches: 57, Indels: 37
0.80 0.12 0.08
Matches are distributed among these distances:
27 45 0.12
28 50 0.13
29 73 0.20
30 154 0.41
31 5 0.01
33 6 0.02
34 18 0.05
35 23 0.06
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (30 bp):
TTCAAAAGCCCACAAGTCAGTGGCACCCTT
Found at i:5550 original size:115 final size:115
Alignment explanation
Indices: 5264--5521 Score: 347
Period size: 115 Copynumber: 2.2 Consensus size: 115
5254 TTTCTTTTTC
* ** **
5264 AGCCCACAAGTTAGTGGCACCCTTTTCAAAAGCCCACAAGTCAGTGGCATATTTTTCAAAAGCCC
1 AGCCCACAAGTCAGTGGCACATTTTTCAAAAGCCCACAAGTCAGTGG-A-ACCTTT-AAAAGCCC
* * *
5329 ACAAGTCAGTGGCAACCTTTAAAAGCCCACAAGTTAGTGGCACCTTTTTCAAA
63 ACAAGTCAGTGGCAACCTTTAAAAGCCCACAAATCAGTGGCACCCTTTTCAAA
*
5382 AGCCCACAAGTCAGTGGCATATTTTTCAAAAGCCCACAAGTCAGTGGCAACCTTTAAAAGCCCAC
1 AGCCCACAAGTCAGTGGCACATTTTTCAAAAGCCCACAAGTCAGTGG-AACCTTTAAAAGCCCAC
* **
5447 AAGTCAGTGGCAACC-TTCAAAGCCCACAAATCAGTGGCACCCTTTTCCGA
65 AAGTCAGTGGCAACCTTTAAAAGCCCACAAATCAGTGGCACCCTTTTCAAA
* *
5497 AGCCCACAAGTCGGTGGCACCTTTT
1 AGCCCACAAGTCAGTGGCACATTTT
5522 CCATCTTTAA
Statistics
Matches: 125, Mismatches: 15, Indels: 3
0.87 0.10 0.02
Matches are distributed among these distances:
115 51 0.41
116 25 0.20
117 4 0.03
118 45 0.36
ACGTcount: A:0.31, C:0.29, G:0.18, T:0.22
Consensus pattern (115 bp):
AGCCCACAAGTCAGTGGCACATTTTTCAAAAGCCCACAAGTCAGTGGAACCTTTAAAAGCCCACA
AGTCAGTGGCAACCTTTAAAAGCCCACAAATCAGTGGCACCCTTTTCAAA
Found at i:5568 original size:52 final size:52
Alignment explanation
Indices: 5511--5722 Score: 208
Period size: 52 Copynumber: 4.2 Consensus size: 52
5501 CACAAGTCGG
*
5511 TGGCACCTTTTCCATCTTTAAGTCCAATGTAGCTGACCTTGAATCAGCACAT
1 TGGCACCTTTTCCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACAT
* *
5563 TGGCA-------C--CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATAT
1 TGGCACCTTTTCCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACAT
*
5606 TGGCACCTTTTCCATCTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACAT
1 TGGCACCTTTTCCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACAT
* * * * * * * * *
5658 TGACATCCTTTTTCTCAGCTTTAAGCCCAATATCGTTGGCCGTGAATCAACATAT
1 TGGCA-CC-TTTTC-CATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACAT
*
5713 TGGCATCTTT
1 TGGCACCTTT
5723 ATCACTTTTC
Statistics
Matches: 130, Mismatches: 18, Indels: 23
0.76 0.11 0.13
Matches are distributed among these distances:
43 39 0.30
45 1 0.01
50 1 0.01
52 43 0.33
53 5 0.04
54 6 0.05
55 35 0.27
ACGTcount: A:0.25, C:0.25, G:0.17, T:0.34
Consensus pattern (52 bp):
TGGCACCTTTTCCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACAT
Found at i:5587 original size:43 final size:43
Alignment explanation
Indices: 5526--5615 Score: 153
Period size: 43 Copynumber: 2.1 Consensus size: 43
5516 CCTTTTCCAT
*
5526 CTTTAAGTCCAATGTAGCTGACCTTGAATCAGCACATTGGCAC
1 CTTTAAGTCCAATATAGCTGACCTTGAATCAGCACATTGGCAC
* *
5569 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCAC
1 CTTTAAGTCCAATATAGCTGACCTTGAATCAGCACATTGGCAC
5612 CTTT
1 CTTT
5616 TCCATCTTTA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (43 bp):
CTTTAAGTCCAATATAGCTGACCTTGAATCAGCACATTGGCAC
Found at i:6332 original size:10 final size:10
Alignment explanation
Indices: 6317--6366 Score: 100
Period size: 10 Copynumber: 5.0 Consensus size: 10
6307 AGATAGGGTG
6317 TTGACAATTT
1 TTGACAATTT
6327 TTGACAATTT
1 TTGACAATTT
6337 TTGACAATTT
1 TTGACAATTT
6347 TTGACAATTT
1 TTGACAATTT
6357 TTGACAATTT
1 TTGACAATTT
6367 AATAGCTAAT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 40 1.00
ACGTcount: A:0.30, C:0.10, G:0.10, T:0.50
Consensus pattern (10 bp):
TTGACAATTT
Found at i:6425 original size:9 final size:10
Alignment explanation
Indices: 6395--6427 Score: 66
Period size: 10 Copynumber: 3.3 Consensus size: 10
6385 GCTGAAGGAG
6395 TTGACAATTT
1 TTGACAATTT
6405 TTGACAATTT
1 TTGACAATTT
6415 TTGACAATTT
1 TTGACAATTT
6425 TTG
1 TTG
6428 TCCGAATCCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 23 1.00
ACGTcount: A:0.27, C:0.09, G:0.12, T:0.52
Consensus pattern (10 bp):
TTGACAATTT
Found at i:6619 original size:13 final size:13
Alignment explanation
Indices: 6601--6625 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
6591 CATAAAGTGT
6601 TGTATCGATACAA
1 TGTATCGATACAA
6614 TGTATCGATACA
1 TGTATCGATACA
6626 TATTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:6706 original size:13 final size:13
Alignment explanation
Indices: 6688--6712 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
6678 ATCACTTAAA
6688 TGTATCGATACAT
1 TGTATCGATACAT
6701 TGTATCGATACA
1 TGTATCGATACA
6713 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:6777 original size:52 final size:52
Alignment explanation
Indices: 6721--6901 Score: 317
Period size: 52 Copynumber: 3.5 Consensus size: 52
6711 CACTGATCTT
* *
6721 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCAATACATTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
*
6773 TGTATCGATACATGCAGGCAAATTTGCCCAAATGTATCGATACACTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
**
6825 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTCAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
6877 TGTATCGATACATGCAGGCAAATTT
1 TGTATCGATACATGCAGGCAAATTT
6902 TCATATTTTG
Statistics
Matches: 123, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
52 123 1.00
ACGTcount: A:0.36, C:0.19, G:0.17, T:0.29
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
Found at i:10093 original size:32 final size:33
Alignment explanation
Indices: 10032--10093 Score: 90
Period size: 32 Copynumber: 1.9 Consensus size: 33
10022 CACCCATATT
*
10032 TATCGATACATATTGCTTTATATCGATACATTG
1 TATCGATACATATTGCTTGATATCGATACATTG
* *
10065 TATCGATACATGTT-CTTGGTATCGATACA
1 TATCGATACATATTGCTTGATATCGATACA
10094 CACTAAATTG
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
32 13 0.50
33 13 0.50
ACGTcount: A:0.29, C:0.16, G:0.15, T:0.40
Consensus pattern (33 bp):
TATCGATACATATTGCTTGATATCGATACATTG
Found at i:10179 original size:13 final size:13
Alignment explanation
Indices: 10143--10179 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
10133 ACTCACTTAA
* *
10143 TATCGATATAGTG
1 TATCGATACATTG
10156 TATCGATACATTG
1 TATCGATACATTG
10169 TATCGATACAT
1 TATCGATACAT
10180 AGTGAAATAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.32, C:0.14, G:0.16, T:0.38
Consensus pattern (13 bp):
TATCGATACATTG
Found at i:10686 original size:36 final size:35
Alignment explanation
Indices: 10625--10693 Score: 102
Period size: 36 Copynumber: 1.9 Consensus size: 35
10615 CTAAGTGATT
* **
10625 GAGAGGTTCTATCTTAGTCTTTGAAAAAGATAGGGA
1 GAGAGGTTCTATCTTAGCCCGTG-AAAAGATAGGGA
10661 GAGAGGTTCTATCTTAGCCCGTGAAAAGATAGG
1 GAGAGGTTCTATCTTAGCCCGTGAAAAGATAGG
10694 AGGTTTCTAT
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
35 10 0.33
36 20 0.67
ACGTcount: A:0.32, C:0.12, G:0.29, T:0.28
Consensus pattern (35 bp):
GAGAGGTTCTATCTTAGCCCGTGAAAAGATAGGGA
Found at i:16560 original size:162 final size:164
Alignment explanation
Indices: 16308--16664 Score: 494
Period size: 162 Copynumber: 2.2 Consensus size: 164
16298 ATTCTTCTCG
* * * *
16308 AAATACGGAGTTTTCTACTCCGTAAATGTTTTCGGGAGGATTTTTCTTAGTTTTTAATCTTTAAA
1 AAATACAGAGTTTTTTACTCCATAAATGTTTTCGGGAGGATTTTTCTTAGGTTTTAATCTTTAAA
* * * *
16373 TTCATCAAATATTATTATATAATTCATATTAAATTAGGTTTTAAAAATTTATTTATTTTTATGAG
66 TTCATCAAATATTATTATATAATTCATATTAAATCA-GTTTTAAAAATTCATTTATTTTCATAAG
** *
16438 TTTTTTAT-TTTTC-TTAAAATTTTTT-TGTTTCTA
130 TTTTGAATATTTTCTTTAAAATTTTTTGT-TTTCGA
16471 AAATACAGAGTTTTTTACTCCATAAATGTTTTCGGGAGGATTTTTCTT-GGTTTTAAT-TTTAAA
1 AAATACAGAGTTTTTTACTCCATAAATGTTTTCGGGAGGATTTTTCTTAGGTTTTAATCTTT-AA
*
16534 ATTCATCAAATATTATTATTTAATTCATATTAAATCAGTTTTAAAAATTCATTTATTTTCATAAG
65 ATTCATCAAATATTATTATATAATTCATATTAAATCAGTTTTAAAAATTCATTTATTTTCATAAG
*
16599 TTTTGAATATTTTCTTTTAAATTTTTTGTTTTCGA
130 TTTTGAATATTTTCTTTAAAATTTTTTGTTTTCGA
* *
16634 AAA-ATCA-AGTTTTTTATTCCATAAATATTTT
1 AAATA-CAGAGTTTTTTACTCCATAAATGTTTT
16665 TTGGGGGAGT
Statistics
Matches: 174, Mismatches: 15, Indels: 11
0.87 0.08 0.05
Matches are distributed among these distances:
161 34 0.20
162 73 0.42
163 66 0.38
164 1 0.01
ACGTcount: A:0.31, C:0.08, G:0.09, T:0.52
Consensus pattern (164 bp):
AAATACAGAGTTTTTTACTCCATAAATGTTTTCGGGAGGATTTTTCTTAGGTTTTAATCTTTAAA
TTCATCAAATATTATTATATAATTCATATTAAATCAGTTTTAAAAATTCATTTATTTTCATAAGT
TTTGAATATTTTCTTTAAAATTTTTTGTTTTCGA
Found at i:16838 original size:27 final size:27
Alignment explanation
Indices: 16806--16864 Score: 109
Period size: 27 Copynumber: 2.2 Consensus size: 27
16796 ACACAAAGAG
16806 TTTTCTCGTAAAATTTTACGAGTTTAT
1 TTTTCTCGTAAAATTTTACGAGTTTAT
*
16833 TTTTCTCGTAAAATTTTATGAGTTTAT
1 TTTTCTCGTAAAATTTTACGAGTTTAT
16860 TTTTC
1 TTTTC
16865 AACTTCTAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.24, C:0.10, G:0.10, T:0.56
Consensus pattern (27 bp):
TTTTCTCGTAAAATTTTACGAGTTTAT
Found at i:17152 original size:10 final size:10
Alignment explanation
Indices: 17137--17183 Score: 69
Period size: 10 Copynumber: 4.6 Consensus size: 10
17127 TAGAGAGGAA
17137 AAAAAAAGAG
1 AAAAAAAGAG
17147 AAAAAAAGA-
1 AAAAAAAGAG
17156 AAGAAAAAGAG
1 AA-AAAAAGAG
17167 AGAAAAAAGAG
1 A-AAAAAAGAG
17178 AAAAAA
1 AAAAAA
17184 TAAAGATTTG
Statistics
Matches: 34, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
9 2 0.06
10 21 0.62
11 10 0.29
12 1 0.03
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (10 bp):
AAAAAAAGAG
Found at i:17157 original size:20 final size:21
Alignment explanation
Indices: 17134--17189 Score: 78
Period size: 22 Copynumber: 2.6 Consensus size: 21
17124 GAGTAGAGAG
17134 GAAAAAAAAAGAGAAAAAA-A
1 GAAAAAAAAAGAGAAAAAAGA
17154 GAAAGAAAAAGAGAGAAAAAAGA
1 GAAA-AAAAA-AGAGAAAAAAGA
17177 GAAAAAATAAAGA
1 GAAAAAA-AAAGA
17190 TTTGCTAGAT
Statistics
Matches: 32, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
20 4 0.12
21 5 0.16
22 16 0.50
23 7 0.22
ACGTcount: A:0.79, C:0.00, G:0.20, T:0.02
Consensus pattern (21 bp):
GAAAAAAAAAGAGAAAAAAGA
Found at i:18080 original size:30 final size:30
Alignment explanation
Indices: 18046--18106 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
18036 AGTTAAATAG
18046 CATTTTACCTTTTAATAAAATAAGTATTTC
1 CATTTTACCTTTTAATAAAATAAGTATTTC
18076 CATTTTACCTTTTAATAAAATAAGTATTTC
1 CATTTTACCTTTTAATAAAATAAGTATTTC
18106 C
1 C
18107 TAACATTGTC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.36, C:0.15, G:0.03, T:0.46
Consensus pattern (30 bp):
CATTTTACCTTTTAATAAAATAAGTATTTC
Found at i:21321 original size:21 final size:21
Alignment explanation
Indices: 21292--21332 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
21282 TGAGAGTGTG
*
21292 GGGGCTGCCCGGTTGCGACCTA
1 GGGGCTG-CCGGTCGCGACCTA
21314 GGGG-TGCCGGTCGCGACCT
1 GGGGCTGCCGGTCGCGACCT
21333 GGTGAGTGCT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 12 0.67
21 2 0.11
22 4 0.22
ACGTcount: A:0.07, C:0.32, G:0.44, T:0.17
Consensus pattern (21 bp):
GGGGCTGCCGGTCGCGACCTA
Found at i:27984 original size:19 final size:19
Alignment explanation
Indices: 27960--28022 Score: 66
Period size: 19 Copynumber: 3.6 Consensus size: 19
27950 ATCGATACAT
27960 TGTATCAATACATCTTGTG
1 TGTATCAATACATCTTGTG
*
27979 TGTATCGATACA-----T-
1 TGTATCAATACATCTTGTG
27992 TGTATCAATACATCTTGTG
1 TGTATCAATACATCTTGTG
*
28011 TGTATCGATACA
1 TGTATCAATACA
28023 AACAGTTAAG
Statistics
Matches: 35, Mismatches: 3, Indels: 12
0.70 0.06 0.24
Matches are distributed among these distances:
13 11 0.31
14 1 0.03
18 1 0.03
19 22 0.63
ACGTcount: A:0.29, C:0.16, G:0.16, T:0.40
Consensus pattern (19 bp):
TGTATCAATACATCTTGTG
Found at i:27988 original size:32 final size:32
Alignment explanation
Indices: 27927--28022 Score: 156
Period size: 32 Copynumber: 3.0 Consensus size: 32
27917 TACAAGCCAA
* * *
27927 TGTATCGATACATTTTGGGATGTATCGATACAT
1 TGTATCAATACATCTTGTG-TGTATCGATACAT
27960 TGTATCAATACATCTTGTGTGTATCGATACAT
1 TGTATCAATACATCTTGTGTGTATCGATACAT
27992 TGTATCAATACATCTTGTGTGTATCGATACA
1 TGTATCAATACATCTTGTGTGTATCGATACA
28023 AACAGTTAAG
Statistics
Matches: 60, Mismatches: 3, Indels: 1
0.94 0.05 0.02
Matches are distributed among these distances:
32 44 0.73
33 16 0.27
ACGTcount: A:0.28, C:0.15, G:0.18, T:0.40
Consensus pattern (32 bp):
TGTATCAATACATCTTGTGTGTATCGATACAT
Found at i:28111 original size:20 final size:21
Alignment explanation
Indices: 28064--28118 Score: 69
Period size: 20 Copynumber: 2.7 Consensus size: 21
28054 GCCAATGACC
*
28064 TGTATCGATACATTCTTTACA
1 TGTATCGATACATTCTGTACA
*
28085 AGTATCGATACATT-TGGT-CA
1 TGTATCGATACATTCT-GTACA
28105 TGTATCGATACATT
1 TGTATCGATACATT
28119 GTATTGATAC
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
20 16 0.53
21 14 0.47
ACGTcount: A:0.29, C:0.16, G:0.15, T:0.40
Consensus pattern (21 bp):
TGTATCGATACATTCTGTACA
Found at i:33736 original size:90 final size:91
Alignment explanation
Indices: 33578--33743 Score: 253
Period size: 90 Copynumber: 1.8 Consensus size: 91
33568 AGATGTACTG
** *
33578 ATACATTGAAAAACGTATTGATACATCTGGGTAAAAAGACAGAATGCATCGATACATTGAAGAAT
1 ATACATTGAAAAACGTATCAATACATCTGGGTAAAAAGACAGAATGCATCGATACATTGAAAAAT
*
33643 GTATTGATACACTCATACATGTATCA
66 GTATCGATACACTCATACATGTATCA
* * * *
33669 ATACATTGAAAAATGTATCAATACATTTGGGT-AAAAGACCGAATGTATCGATACATTGAAAAAT
1 ATACATTGAAAAACGTATCAATACATCTGGGTAAAAAGACAGAATGCATCGATACATTGAAAAAT
33733 GTATCGATACA
66 GTATCGATACA
33744 TCTGGGTAAA
Statistics
Matches: 67, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
90 39 0.58
91 28 0.42
ACGTcount: A:0.43, C:0.13, G:0.16, T:0.28
Consensus pattern (91 bp):
ATACATTGAAAAACGTATCAATACATCTGGGTAAAAAGACAGAATGCATCGATACATTGAAAAAT
GTATCGATACACTCATACATGTATCA
Found at i:33756 original size:24 final size:20
Alignment explanation
Indices: 33620--33744 Score: 79
Period size: 20 Copynumber: 5.8 Consensus size: 20
33610 AAAAAGACAG
* *
33620 AATGCATCGATACATTGAAG
1 AATGTATCGATACATTGAAA
* * * *
33640 AATGTATTGATACACTCATA
1 AATGTATCGATACATTGAAA
* *
33660 CATGTATCAATACATTGAAA
1 AATGTATCGATACATTGAAA
*
33680 AATGTATCAATACATTTGGGTAAAAGA
1 AATGTATCGATACA-TT--G---AA-A
33707 CCGAATGTATCGATACATTGAAA
1 ---AATGTATCGATACATTGAAA
33730 AATGTATCGATACAT
1 AATGTATCGATACAT
33745 CTGGGTAAAA
Statistics
Matches: 81, Mismatches: 14, Indels: 20
0.70 0.12 0.17
Matches are distributed among these distances:
20 56 0.69
21 2 0.02
23 2 0.02
24 2 0.02
26 2 0.02
27 2 0.02
29 2 0.02
30 13 0.16
ACGTcount: A:0.42, C:0.14, G:0.15, T:0.30
Consensus pattern (20 bp):
AATGTATCGATACATTGAAA
Found at i:33775 original size:10 final size:10
Alignment explanation
Indices: 33760--33801 Score: 75
Period size: 10 Copynumber: 4.2 Consensus size: 10
33750 TAAAAATAAG
33760 ACTTTTCCAT
1 ACTTTTCCAT
33770 ACTTTTCCAT
1 ACTTTTCCAT
*
33780 ATTTTTCCAT
1 ACTTTTCCAT
33790 ACTTTTCCAT
1 ACTTTTCCAT
33800 AC
1 AC
33802 ATTGAAGTTC
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
10 30 1.00
ACGTcount: A:0.21, C:0.29, G:0.00, T:0.50
Consensus pattern (10 bp):
ACTTTTCCAT
Found at i:35885 original size:78 final size:79
Alignment explanation
Indices: 35624--35947 Score: 334
Period size: 79 Copynumber: 4.1 Consensus size: 79
35614 AGGGGATCGA
* * * * *
35624 AGTA-CCCCTTCAGAAACAACGGGGTTGGAGTATCCCCAATGGTGAAAAATCGATGTTTTAGAAA
1 AGTATCCCC-TCAGAAATAACGAGGTTGGAGTATCCCCAATTGTGAAAAATTGGTGTTTTAGAAA
*
35688 TAAAA-TCGGGGTTGG
65 TAAAACT-GAGGTTGG
* ** * * * * *
35703 AGTATCCCTTTGGAAATAA-TAGAGTTAGAGTATCCCCAATTGTGGAAAATTGGTGTTTAAAAAA
1 AGTATCCCCTCAGAAATAACGAG-GTTGGAGTATCCCCAATTGTGAAAAATTGGTGTTTTAGAAA
35767 TAAAACTGAGGTTGG
65 TAAAACTGAGGTTGG
* * * ** * *
35782 AGTATCCGCTCAAAAATAACGAGGTTGGAGTATTCCTGATTGTGAAAATTTGGTGTTTTGGAAAT
1 AGTATCCCCTCAGAAATAACGAGGTTGGAGTATCCCCAATTGTGAAAAATTGGTGTTTTAGAAAT
35847 AAAACTG-GGTTGG
66 AAAACTGAGGTTGG
* ** * * *
35860 AGTATCCCCTCAGAAATAACAAGGTTGGAGTATCATCGATTGTGAAAAATTAGTGTTTTGGAAAT
1 AGTATCCCCTCAGAAATAACGAGGTTGGAGTATCCCCAATTGTGAAAAATTGGTGTTTTAGAAAT
35925 AAAA-TCGAGGTTGG
66 AAAACT-GAGGTTGG
35939 AGTATCCCC
1 AGTATCCCC
35948 GATTGTGAAA
Statistics
Matches: 201, Mismatches: 38, Indels: 12
0.80 0.15 0.05
Matches are distributed among these distances:
77 1 0.00
78 68 0.34
79 126 0.63
80 6 0.03
ACGTcount: A:0.34, C:0.13, G:0.25, T:0.29
Consensus pattern (79 bp):
AGTATCCCCTCAGAAATAACGAGGTTGGAGTATCCCCAATTGTGAAAAATTGGTGTTTTAGAAAT
AAAACTGAGGTTGG
Found at i:35902 original size:157 final size:158
Alignment explanation
Indices: 35641--35945 Score: 364
Period size: 157 Copynumber: 1.9 Consensus size: 158
35631 CTTCAGAAAC
*
35641 AACGGGGTTGGAGTATCCCCAATGGTGAAAAATCGATGTTTTAGAAATAAAATCGGGGTTGGAGT
1 AACGAGGTTGGAGTATCCCCAATGGTGAAAAATCGATGTTTTAGAAATAAAATCGGGGTTGGAGT
* ** * * * *
35706 ATCCCTTTGGAAATAATAGAGTTAGAGTATCCCCAATTGTGGAAAATTGGTGTTTAAAAAATAAA
66 ATCCCCTCAGAAATAAAAGAGTTAGAGTATCACCAATTGTGAAAAATTAGTGTTTAAAAAATAAA
35771 A-CTGAGGTTGGAGTATCCGCTCAAAAAT
131 ATC-GAGGTTGGAGTATCCGCTCAAAAAT
* ** * * * * * *
35799 AACGAGGTTGGAGTATTCCTGATTGTGAAAATTTGGTGTTTTGGAAATAAAA-CTGGGTTGGAGT
1 AACGAGGTTGGAGTATCCCCAATGGTGAAAAATCGATGTTTTAGAAATAAAATCGGGGTTGGAGT
* * * ***
35863 ATCCCCTCAGAAATAACAAG-GTTGGAGTATCATCGATTGTGAAAAATTAGTGTTTTGGAAATAA
66 ATCCCCTCAGAAATAA-AAGAGTTAGAGTATCACCAATTGTGAAAAATTAGTGTTTAAAAAATAA
35927 AATCGAGGTTGGAGTATCC
130 AATCGAGGTTGGAGTATCC
35946 CCGATTGTGA
Statistics
Matches: 122, Mismatches: 23, Indels: 5
0.81 0.15 0.03
Matches are distributed among these distances:
157 76 0.62
158 46 0.38
ACGTcount: A:0.34, C:0.11, G:0.26, T:0.30
Consensus pattern (158 bp):
AACGAGGTTGGAGTATCCCCAATGGTGAAAAATCGATGTTTTAGAAATAAAATCGGGGTTGGAGT
ATCCCCTCAGAAATAAAAGAGTTAGAGTATCACCAATTGTGAAAAATTAGTGTTTAAAAAATAAA
ATCGAGGTTGGAGTATCCGCTCAAAAAT
Found at i:35951 original size:51 final size:51
Alignment explanation
Indices: 35881--35998 Score: 182
Period size: 51 Copynumber: 2.3 Consensus size: 51
35871 AGAAATAACA
**
35881 AGGTTGGAGTATCATCGATTGTGAAAAATTAGTGTTTTGGAAATAAAATCG
1 AGGTTGGAGTATCCCCGATTGTGAAAAATTAGTGTTTTGGAAATAAAATCG
*
35932 AGGTTGGAGTATCCCCGATTGTGAAAAATTTGTGTTTTGGAAATAAAATCG
1 AGGTTGGAGTATCCCCGATTGTGAAAAATTAGTGTTTTGGAAATAAAATCG
* * *
35983 GGGTTGAAGTAACCCC
1 AGGTTGGAGTATCCCC
35999 TCAAAAATAA
Statistics
Matches: 61, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
51 61 1.00
ACGTcount: A:0.32, C:0.10, G:0.26, T:0.31
Consensus pattern (51 bp):
AGGTTGGAGTATCCCCGATTGTGAAAAATTAGTGTTTTGGAAATAAAATCG
Found at i:35954 original size:129 final size:132
Alignment explanation
Indices: 35801--36082 Score: 365
Period size: 135 Copynumber: 2.1 Consensus size: 132
35791 TCAAAAATAA
* * * *
35801 CGAGGTTGGAGTATTCCTGATTGTG-AAAATTTGGTGTTTTGGAAATAAAA-CTGGGTTGGAGTA
1 CGAGGTTGGAGTATCCCCGATTGTGAAAAATTT-GTGTTTTGGAAATAAAATCGGGGTTGAAGTA
* * * *
35864 TCCCCTCAGAAATAACAAGGTTGGAGTAT-CAT-CGATTGTGAAAAATTAGTGTTTTGGAAATAA
65 ACCCCTCAAAAATAACAAGGTTGGAATATCCATCCGATTATGAAAAATTAGTGTTTTGGAAATAA
*
35927 AAT
130 AAC
35930 CGAGGTTGGAGTATCCCCGATTGTGAAAAATTTGTGTTTTGGAAATAAAATCGGGGTTGAAGTAA
1 CGAGGTTGGAGTATCCCCGATTGTGAAAAATTTGTGTTTTGGAAATAAAATCGGGGTTGAAGTAA
* * * *
35995 CCCCTCAAAAATAACGAGGTTGGAATATCCCCTCCCCGATTATGAAAAATTGGTGTTTTTGAAAT
66 CCCCTCAAAAATAACAAGGTTGGAATAT-CCAT--CCGATTATGAAAAATTAGTGTTTTGGAAAT
36060 AAAAC
128 AAAAC
* *
36065 CGAGATTGGAGTGTCCCC
1 CGAGGTTGGAGTATCCCC
36083 TCAAAAATAA
Statistics
Matches: 131, Mismatches: 15, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
129 40 0.31
130 43 0.33
132 2 0.02
135 46 0.35
ACGTcount: A:0.32, C:0.13, G:0.24, T:0.30
Consensus pattern (132 bp):
CGAGGTTGGAGTATCCCCGATTGTGAAAAATTTGTGTTTTGGAAATAAAATCGGGGTTGAAGTAA
CCCCTCAAAAATAACAAGGTTGGAATATCCATCCGATTATGAAAAATTAGTGTTTTGGAAATAAA
AC
Found at i:36013 original size:79 final size:79
Alignment explanation
Indices: 35930--36156 Score: 276
Period size: 84 Copynumber: 2.8 Consensus size: 79
35920 GAAATAAAAT
35930 CGAGGTTGGAGTATCCCCGATTGTGAAAAATTTGTGTTTTGGAAATAAAATCGGGGTTGAAGTAA
1 CGAGGTTGGAGTATCCCCGATTGTGAAAAATTTGTGTTTTGGAAATAAAATCGGGGTTGAAGTAA
35995 CCCCTCAAAAATAA
66 CCCCTCAAAAATAA
* * * * * * * *
36009 CGAGGTTGGAATATCCCCTCCCCGATTATGAAAAATTGGTGTTTTTGAAATAAAACCGAGATTGG
1 CGAGGTTGGAGTA-----TCCCCGATTGTGAAAAATTTGTGTTTTGGAAATAAAATCGGGGTTGA
**
36074 AGTGTCCCCTCAAAAATAA
61 AGTAACCCCTCAAAAATAA
* * *
36093 CAAGGTTGGAGAATCCTCGATTGTGAAAAA-TTGCTGTTTTGGAAATAAAATCGGGGTTGAAGTA
1 CGAGGTTGGAGTATCCCCGATTGTGAAAAATTTG-TGTTTTGGAAATAAAATCGGGGTTGAAGTA
36157 TCCCTTCGAA
Statistics
Matches: 120, Mismatches: 22, Indels: 12
0.78 0.14 0.08
Matches are distributed among these distances:
78 2 0.02
79 51 0.43
84 67 0.56
ACGTcount: A:0.33, C:0.15, G:0.24, T:0.28
Consensus pattern (79 bp):
CGAGGTTGGAGTATCCCCGATTGTGAAAAATTTGTGTTTTGGAAATAAAATCGGGGTTGAAGTAA
CCCCTCAAAAATAA
Found at i:36090 original size:130 final size:126
Alignment explanation
Indices: 35826--36090 Score: 300
Period size: 130 Copynumber: 2.0 Consensus size: 126
35816 CCTGATTGTG
* * * * *
35826 AAAATTTGGTGTTTTGGAAATAAAACTGGGTTGGAGTATCCCCTCAGAAATAACAAGGTTGGAGT
1 AAAATTTGGTGTTTTGGAAATAAAACGGGGTTGAAGTAACCCCTCAAAAATAACAAGGTTGGAAT
* * * *
35891 ATCATCGATTGTGAAAAATTAGTGTTTTGGAAATAAAATCGAGGTTGGAGTATCCCCGATTGTGA
66 ATCATCGATTATGAAAAATTAGTGTTTTGGAAATAAAACCGAGATTGGAGTATCCCC----GTCA
*
35956 AAAATTT-GTGTTTTGGAAATAAAATCGGGGTTGAAGTAACCCCTCAAAAATAACGAGGTTGGAA
1 AAAATTTGGTGTTTTGGAAATAAAA-CGGGGTTGAAGTAACCCCTCAAAAATAACAAGGTTGGAA
* * * *
36020 TATCCCCTCCCCGATTATGAAAAATTGGTGTTTTTGAAATAAAACCGAGATTGGAGTGTCCCC-T
65 TAT--CAT---CGATTATGAAAAATTAGTGTTTTGGAAATAAAACCGAGATTGGAGTATCCCCGT
36084 CA
125 CA
36086 AAAAT
1 AAAAT
36091 AACAAGGTTG
Statistics
Matches: 115, Mismatches: 14, Indels: 12
0.82 0.10 0.09
Matches are distributed among these distances:
129 17 0.15
130 50 0.43
132 2 0.02
135 46 0.40
ACGTcount: A:0.34, C:0.14, G:0.23, T:0.29
Consensus pattern (126 bp):
AAAATTTGGTGTTTTGGAAATAAAACGGGGTTGAAGTAACCCCTCAAAAATAACAAGGTTGGAAT
ATCATCGATTATGAAAAATTAGTGTTTTGGAAATAAAACCGAGATTGGAGTATCCCCGTCA
Found at i:36115 original size:214 final size:208
Alignment explanation
Indices: 35730--36160 Score: 569
Period size: 214 Copynumber: 2.0 Consensus size: 208
35720 AATAGAGTTA
* * * *
35730 GAGTATCCCCAATTGTGGAAAATTGGTGTTTAAAAAATAAAACTGAGGTTGGAGTATCCGCTCAA
1 GAGTATCCCCAATTGTGAAAAATTGGTGTTTAAAAAATAAAACTGAGGTTGAAGTAACCCCTCAA
* * * * * *
35795 AAATAACGAGGTTGGAGTATTCCTGATTGTGAAAATTTGGTGTTTTGGAAATAAAACTGGGTTGG
66 AAATAACGAGGTTGGAATATTCCCGATTATGAAAAATTGGTGTTTTGGAAATAAAACCGGATTGG
* *
35860 AGTATCCCCTCAGAAATAACAAGGTTGGAGTATCATCGATTGTGAAAAATTAG-TGTTTTGGAAA
131 AGTATCCCCTCAAAAATAACAAGGTTGGAGAATCATCGATTGTGAAAAATT-GCTGTTTTGGAAA
35924 TAAAATCGAGGTTG
195 TAAAATCGAGGTTG
* * *** *
35938 GAGTATCCCCGATTGTGAAAAATTTGTGTTTTGGAAATAAAA-TCGGGGTTGAAGTAACCCCTCA
1 GAGTATCCCCAATTGTGAAAAATTGGTGTTTAAAAAATAAAACT-GAGGTTGAAGTAACCCCTCA
*
36002 AAAATAACGAGGTTGGAATATCCCCTCCCCGATTATGAAAAATTGGTGTTTTTGAAATAAAACCG
65 AAAATAACGAGGTTGGAATAT----T-CCCGATTATGAAAAATTGGTGTTTTGGAAATAAAACCG
* *
36067 AGATTGGAGTGTCCCCTCAAAAATAACAAGGTTGGAGAATCCTCGATTGTGAAAAATTGCTGTTT
125 -GATTGGAGTATCCCCTCAAAAATAACAAGGTTGGAGAATCATCGATTGTGAAAAATTGCTGTTT
*
36132 TGGAAATAAAATCGGGGTTG
189 TGGAAATAAAATCGAGGTTG
*
36152 AAGTATCCC
1 GAGTATCCC
36161 TTCGAAATAA
Statistics
Matches: 192, Mismatches: 23, Indels: 10
0.85 0.10 0.04
Matches are distributed among these distances:
207 1 0.01
208 72 0.38
212 1 0.01
213 34 0.18
214 84 0.44
ACGTcount: A:0.34, C:0.13, G:0.24, T:0.29
Consensus pattern (208 bp):
GAGTATCCCCAATTGTGAAAAATTGGTGTTTAAAAAATAAAACTGAGGTTGAAGTAACCCCTCAA
AAATAACGAGGTTGGAATATTCCCGATTATGAAAAATTGGTGTTTTGGAAATAAAACCGGATTGG
AGTATCCCCTCAAAAATAACAAGGTTGGAGAATCATCGATTGTGAAAAATTGCTGTTTTGGAAAT
AAAATCGAGGTTG
Found at i:38759 original size:45 final size:48
Alignment explanation
Indices: 38654--38759 Score: 146
Period size: 49 Copynumber: 2.2 Consensus size: 48
38644 CATTGTGCCA
*
38654 ATTCAAGGCCAGCGACATTGGGCTAAGGGAAAAGTGGACCAATGTGCTG
1 ATTCAAGGCCAGCGACATTGGGCTAA-GGAAAAGTGGACCAATATGCTG
* *
38703 ATTCAAGGCCAGCGACATTGGGCTAA-TAAAGGT-G-CCAATATGCTG
1 ATTCAAGGCCAGCGACATTGGGCTAAGGAAAAGTGGACCAATATGCTG
*
38748 ATTCAATGCCAG
1 ATTCAAGGCCAG
38760 TGATATCGGA
Statistics
Matches: 53, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
45 21 0.40
46 1 0.02
47 5 0.09
49 26 0.49
ACGTcount: A:0.31, C:0.20, G:0.28, T:0.21
Consensus pattern (48 bp):
ATTCAAGGCCAGCGACATTGGGCTAAGGAAAAGTGGACCAATATGCTG
Found at i:38829 original size:32 final size:32
Alignment explanation
Indices: 38803--38919 Score: 99
Period size: 32 Copynumber: 3.9 Consensus size: 32
38793 TTTGATAGGG
38803 GTTACCACCGACTTACGTGGGCTTTGAAAAGA
1 GTTACCACCGACTTACGTGGGCTTTGAAAAGA
* * **
38835 GTTGCCATCGACTTGTGTGGGCTTTGAAAAG-
1 GTTACCACCGACTTACGTGGGCTTTGAAAAGA
*
38866 GTGT--CATCGACTT--GTGGGCTTT-AAAA-A
1 GT-TACCACCGACTTACGTGGGCTTTGAAAAGA
* *
38893 GGTGCCACCGACTTA--TGGGCTTTGAAA
1 GTTACCACCGACTTACGTGGGCTTTGAAA
38920 GGGTATGCCA
Statistics
Matches: 73, Mismatches: 6, Indels: 15
0.78 0.06 0.16
Matches are distributed among these distances:
26 1 0.01
27 5 0.07
28 25 0.34
29 3 0.04
30 9 0.12
31 2 0.03
32 28 0.38
ACGTcount: A:0.24, C:0.19, G:0.28, T:0.29
Consensus pattern (32 bp):
GTTACCACCGACTTACGTGGGCTTTGAAAAGA
Found at i:38876 original size:30 final size:28
Alignment explanation
Indices: 38819--39254 Score: 229
Period size: 28 Copynumber: 15.5 Consensus size: 28
38809 ACCGACTTAC
38819 GTGGGCTTTGAAAAGAGTTGCCATCGACTTGT
1 GTGGGCTTTGAAAAG-G-TGCCATCGAC-T-T
*
38851 GTGGGCTTTGAAAAGGTGTCATCGACTT
1 GTGGGCTTTGAAAAGGTGCCATCGACTT
* *
38879 GTGGGCTTTAAAAAGGTGCCACCGACTT
1 GTGGGCTTTGAAAAGGTGCCATCGACTT
* *
38907 ATGGGCTTTGAAAGGGTATGCCA-CTGACTT
1 GTGGGCTTTGAAAAGG--TGCCATC-GACTT
**
38937 AAGGGCTTT--AAA------A-CGACTT
1 GTGGGCTTTGAAAAGGTGCCATCGACTT
* * *
38956 GTGTGGACCTTGAAAAGAGTTACCA-CTAACTT
1 GTG-GG-CTTTGAAAAG-G-TGCCATC-GACTT
38988 GTGGGCTTTGAAAAGGGTGCCA-CTGACTT
1 GTGGGCTTTGAAAA-GGTGCCATC-GACTT
39017 GTGGGCTTTGAAAAGGGTGCCA-CTGACTT
1 GTGGGCTTTGAAAA-GGTGCCATC-GACTT
* *
39046 GTGGGCTTTGAAAGGGTGCCA-CTAACTT
1 GTGGGCTTTGAAAAGGTGCCATC-GACTT
39074 GTGGGCTTTG-AAAGGATGCCA-CTGACTT
1 GTGGGCTTTGAAAAGG-TGCCATC-GACTT
* *
39102 GTAGGCTTTG-AAAGGATGCCA-CTGCCTT
1 GTGGGCTTTGAAAAGG-TGCCATC-GACTT
*
39130 ATGGGCTTT-AAAAGGATGCCA-CTGACTT
1 GTGGGCTTTGAAAAGG-TGCCATC-GACTT
*
39158 GTGGGCTTTGAGAAGGATGCCA-CTGACTT
1 GTGGGCTTTGAAAAGG-TGCCATC-GACTT
*** *
39187 GCCAGCTTT-AAAAGGATGCCA-CTAACTT
1 GTGGGCTTTGAAAAGG-TGCCATC-GACTT
* * * *
39215 -TTGGCTTTGGAGAGATGCCA-CTGACTT
1 GTGGGCTTTGAAAAGGTGCCATC-GACTT
39242 GTGGGCTTTGAAA
1 GTGGGCTTTGAAA
39255 GGGATGAATG
Statistics
Matches: 340, Mismatches: 42, Indels: 48
0.79 0.10 0.11
Matches are distributed among these distances:
19 6 0.02
20 4 0.01
21 3 0.01
23 3 0.01
27 20 0.06
28 162 0.48
29 78 0.23
30 36 0.11
31 6 0.02
32 22 0.06
ACGTcount: A:0.24, C:0.18, G:0.29, T:0.29
Consensus pattern (28 bp):
GTGGGCTTTGAAAAGGTGCCATCGACTT
Found at i:39068 original size:57 final size:57
Alignment explanation
Indices: 38951--39260 Score: 369
Period size: 56 Copynumber: 5.4 Consensus size: 57
38941 GCTTTAAAAC
* * * * *
38951 GACTTGTGTGGACCTTGAAAAGAGTTACCACTAACTTGTGGGCTTTGAAAAGGGTGCCACT
1 GACTTGTG-GG-CTTTGAAAAG-GATGCCACTGACTTGTGGGCTTTG-AAAGGATGCCACT
* *
39012 GACTTGTGGGCTTTGAAAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACT
1 GACTTGTGGGCTTTGAAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACT
* *
39069 AACTTGTGGGCTTTG-AAAGGATGCCACTGACTTGTAGGCTTTGAAAGGATGCCACT
1 GACTTGTGGGCTTTGAAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACT
* *
39125 GCCTTATGGGCTTT-AAAAGGATGCCACTGACTTGTGGGCTTTGAGAAGGATGCCACT
1 GACTTGTGGGCTTTGAAAAGGATGCCACTGACTTGTGGGCTTTGA-AAGGATGCCACT
*** * * *
39182 GACTTGCCAGCTTT-AAAAGGATGCCACTAACTT-TTGGCTTTG-GAGAGATGCCACT
1 GACTTGTGGGCTTTGAAAAGGATGCCACTGACTTGTGGGCTTTGAAAG-GATGCCACT
*
39237 GACTTGTGGGCTTTGAAAGGGATG
1 GACTTGTGGGCTTTGAAAAGGATG
39261 AATGTTCTAG
Statistics
Matches: 221, Mismatches: 24, Indels: 13
0.86 0.09 0.05
Matches are distributed among these distances:
54 2 0.01
55 20 0.09
56 93 0.42
57 66 0.30
58 21 0.10
59 9 0.04
60 2 0.01
61 8 0.04
ACGTcount: A:0.24, C:0.18, G:0.30, T:0.28
Consensus pattern (57 bp):
GACTTGTGGGCTTTGAAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACT
Found at i:39214 original size:28 final size:28
Alignment explanation
Indices: 38978--39256 Score: 328
Period size: 28 Copynumber: 9.9 Consensus size: 28
38968 AAAAGAGTTA
* *
38978 CCACTAACTTGTGGGCTTTGAAAAGGGTG
1 CCACTGACTTGTGGGCTTT-AAAAGGATG
*
39007 CCACTGACTTGTGGGCTTTGAAAAGGGTG
1 CCACTGACTTGTGGGCTTT-AAAAGGATG
* *
39036 CCACTGACTTGTGGGCTTTGAAAGGGTG
1 CCACTGACTTGTGGGCTTTAAAAGGATG
* *
39064 CCACTAACTTGTGGGCTTTGAAAGGATG
1 CCACTGACTTGTGGGCTTTAAAAGGATG
* *
39092 CCACTGACTTGTAGGCTTTGAAAGGATG
1 CCACTGACTTGTGGGCTTTAAAAGGATG
* *
39120 CCACTGCCTTATGGGCTTTAAAAGGATG
1 CCACTGACTTGTGGGCTTTAAAAGGATG
*
39148 CCACTGACTTGTGGGCTTTGAGAAGGATG
1 CCACTGACTTGTGGGCTTT-AAAAGGATG
***
39177 CCACTGACTTGCCAGCTTTAAAAGGATG
1 CCACTGACTTGTGGGCTTTAAAAGGATG
* * **
39205 CCACTAACTT-TTGGCTTT-GGAGAGATG
1 CCACTGACTTGTGGGCTTTAAAAG-GATG
*
39232 CCACTGACTTGTGGGCTTTGAAAGG
1 CCACTGACTTGTGGGCTTTAAAAGG
39257 GATGAATGTT
Statistics
Matches: 219, Mismatches: 27, Indels: 9
0.86 0.11 0.04
Matches are distributed among these distances:
26 2 0.01
27 18 0.08
28 126 0.58
29 73 0.33
ACGTcount: A:0.23, C:0.19, G:0.30, T:0.28
Consensus pattern (28 bp):
CCACTGACTTGTGGGCTTTAAAAGGATG
Found at i:40458 original size:7 final size:7
Alignment explanation
Indices: 40446--40493 Score: 53
Period size: 7 Copynumber: 6.6 Consensus size: 7
40436 CTAAACCCTT
40446 TTTTTTG
1 TTTTTTG
40453 TTTTTTTGG
1 -TTTTTT-G
*
40462 TTTTTTA
1 TTTTTTG
40469 TTTTTT-
1 TTTTTTG
40475 TATTTTTG
1 T-TTTTTG
40483 TTTTTTG
1 TTTTTTG
40490 TTTT
1 TTTT
40494 GGTTTTTTTT
Statistics
Matches: 36, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
6 1 0.03
7 21 0.58
8 13 0.36
9 1 0.03
ACGTcount: A:0.04, C:0.00, G:0.10, T:0.85
Consensus pattern (7 bp):
TTTTTTG
Found at i:40458 original size:8 final size:8
Alignment explanation
Indices: 40445--40502 Score: 53
Period size: 8 Copynumber: 6.9 Consensus size: 8
40435 TCTAAACCCT
40445 TTTTTTTG
1 TTTTTTTG
40453 TTTTTTTG
1 TTTTTTTG
* *
40461 GTTTTTTA
1 TTTTTTTG
*
40469 TTTTTTTA
1 TTTTTTTG
*
40477 TTTTTGTTT
1 TTTTT-TTG
40486 TTTGTTTTGG
1 TTT-TTTT-G
40496 TTTTTTT
1 TTTTTTT
40503 TGTATGAAGA
Statistics
Matches: 42, Mismatches: 5, Indels: 5
0.81 0.10 0.10
Matches are distributed among these distances:
8 26 0.62
9 11 0.26
10 5 0.12
ACGTcount: A:0.03, C:0.00, G:0.12, T:0.84
Consensus pattern (8 bp):
TTTTTTTG
Found at i:42587 original size:78 final size:79
Alignment explanation
Indices: 42453--42656 Score: 232
Period size: 80 Copynumber: 2.6 Consensus size: 79
42443 GAGATAATAA
* * * * ** * *
42453 CGGGGTTGGAGTGTTCCCTTGAAAATAACGGGGCTGGAGTATCCCCGGTTGTGAG-AAATCGATG
1 CGGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCAATTATGAGAAAATCAAT-
*
42517 A-TTAGAAAAAAAAT
65 ATTTAGAAAAAAAAC
*
42531 CGGGATTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCAATTATGAGAAAATCAATA
1 CGGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCAATTATGAGAAAATCAATA
* * * *
42596 TTTTGGGAATAAAGC
66 -TTTAGAAAAAAAAC
* *
42611 CGGGGTTGGAGTATCCCCTCGGAAGTAACGGGGTTGGAGTATCCCC
1 CGGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCC
42657 GATGAAATAA
Statistics
Matches: 106, Mismatches: 17, Indels: 4
0.83 0.13 0.03
Matches are distributed among these distances:
78 48 0.45
79 7 0.07
80 51 0.48
ACGTcount: A:0.29, C:0.17, G:0.30, T:0.24
Consensus pattern (79 bp):
CGGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCAATTATGAGAAAATCAATA
TTTAGAAAAAAAAC
Found at i:42651 original size:28 final size:28
Alignment explanation
Indices: 42611--42682 Score: 99
Period size: 28 Copynumber: 2.6 Consensus size: 28
42601 GGAATAAAGC
** *
42611 CGGGGTTGGAGTATCCCCTCGGAAGTAA
1 CGGGGTTGGAGTATCCCCGAGGAAATAA
*
42639 CGGGGTTGGAGTATCCCCGATGAAATAA
1 CGGGGTTGGAGTATCCCCGAGGAAATAA
*
42667 CGAGGTTGGAGTATCC
1 CGGGGTTGGAGTATCC
42683 TCGACTGTGA
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.24, C:0.19, G:0.35, T:0.22
Consensus pattern (28 bp):
CGGGGTTGGAGTATCCCCGAGGAAATAA
Found at i:42667 original size:108 final size:108
Alignment explanation
Indices: 42531--42845 Score: 323
Period size: 108 Copynumber: 2.9 Consensus size: 108
42521 GAAAAAAAAT
* *
42531 CGGGATTGGAGTATCCCC--TCGAAAATAACGGGGTTGGAGTATCCCCAATTATGAGAAAATCAA
1 CGGGGTTGGAGTATCCCCGAT-G-AAATAACGGGGTTGGAGTATCCCCAACTATGA-AAAATCAA
* * * * * *
42594 TA-TTTTGGGAATAAAGCCGGGGTTGGAGTATCCCCTCGGAAGTAA
63 TATTTTTGGAAATAAAACCAGAGTTGGAGTATCCCCTCAGAAATAA
* * * * ***
42639 CGGGGTTGGAGTATCCCCGATGAAATAACGAGGTTGGAGTATCCTCGACTGTGAAAAATTGGTAT
1 CGGGGTTGGAGTATCCCCGATGAAATAACGGGGTTGGAGTATCCCCAACTATGAAAAATCAATAT
*
42704 TTTTGGAAATAAAATCAGAGTTGGAGTATCCCCTCAGAAATAA
66 TTTTGGAAATAAAACCAGAGTTGGAGTATCCCCTCAGAAATAA
* * * * ***
42747 CGGGGTTGGAGTATCCCCGATG-ATTAACGGGGTTGGAGTATCCCCGATTGTGAAGAAATTGGTG
1 CGGGGTTGGAGTATCCCCGATGAAATAACGGGGTTGGAGTATCCCCAACTATGAA-AAATCAAT-
* * *
42811 TTTTTTGGAAATAAAATCGGAGTTGGAGTATCCCC
64 ATTTTTGGAAATAAAACCAGAGTTGGAGTATCCCC
42846 GATTATAGAA
Statistics
Matches: 180, Mismatches: 22, Indels: 9
0.85 0.10 0.04
Matches are distributed among these distances:
107 35 0.19
108 110 0.61
109 34 0.19
110 1 0.01
ACGTcount: A:0.29, C:0.16, G:0.28, T:0.27
Consensus pattern (108 bp):
CGGGGTTGGAGTATCCCCGATGAAATAACGGGGTTGGAGTATCCCCAACTATGAAAAATCAATAT
TTTTGGAAATAAAACCAGAGTTGGAGTATCCCCTCAGAAATAA
Found at i:42757 original size:28 final size:27
Alignment explanation
Indices: 42723--42791 Score: 95
Period size: 27 Copynumber: 2.5 Consensus size: 27
42713 TAAAATCAGA
42723 GTTGGAGTATCCCCTCA-GAAATAACGGG
1 GTTGGAGTATCCCC-CATG-AATAACGGG
* *
42751 GTTGGAGTATCCCCGATGATTAACGGG
1 GTTGGAGTATCCCCCATGAATAACGGG
42778 GTTGGAGTATCCCC
1 GTTGGAGTATCCCC
42792 GATTGTGAAG
Statistics
Matches: 38, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
27 23 0.61
28 15 0.39
ACGTcount: A:0.23, C:0.22, G:0.30, T:0.25
Consensus pattern (27 bp):
GTTGGAGTATCCCCCATGAATAACGGG
Found at i:42845 original size:54 final size:52
Alignment explanation
Indices: 42778--42903 Score: 166
Period size: 51 Copynumber: 2.4 Consensus size: 52
42768 GATTAACGGG
* * *
42778 GTTGGAGTATCCCCGATTGTGA-AGAAATTGGTGTTTTTTGGAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTGTGAGA-AAACTAGTG--TTTTGAAAATAAAATCGGA
*
42832 GTTGGAGTATCCCCGATTAT-AGAAAACTAGTGTTTTGAAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTGTGAGAAAACTAGTGTTTTGAAAATAAAATCGGA
*
42883 GTTGGAATATCCCCGATTGTG
1 GTTGGAGTATCCCCGATTGTG
42904 GAGATTTGAG
Statistics
Matches: 64, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
51 36 0.56
53 8 0.12
54 20 0.31
ACGTcount: A:0.31, C:0.12, G:0.25, T:0.32
Consensus pattern (52 bp):
GTTGGAGTATCCCCGATTGTGAGAAAACTAGTGTTTTGAAAATAAAATCGGA
Found at i:45266 original size:13 final size:13
Alignment explanation
Indices: 45248--45273 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
45238 ACAAAGATCC
45248 ATGTATCGATACA
1 ATGTATCGATACA
45261 ATGTATCGATACA
1 ATGTATCGATACA
45274 CAGAAAAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:45269 original size:33 final size:33
Alignment explanation
Indices: 45227--45293 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
45217 AAAATTTCCA
***
45227 AATGTATCGATACAAAGATCCATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
*
45260 AATGTATCGATACACAGAAAAATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
45293 A
1 A
45294 TTTCCTTGGC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.43, C:0.16, G:0.15, T:0.25
Consensus pattern (33 bp):
AATGTATCGATACAAAGAAAAATGTATCGATAC
Found at i:45353 original size:13 final size:13
Alignment explanation
Indices: 45335--45359 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
45325 AAAATACTTA
45335 TGTATCGATACAT
1 TGTATCGATACAT
45348 TGTATCGATACA
1 TGTATCGATACA
45360 AAACTTATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:45378 original size:32 final size:32
Alignment explanation
Indices: 45316--45378 Score: 92
Period size: 32 Copynumber: 2.0 Consensus size: 32
45306 TAGCTAATTA
*
45316 TGTATCGATAAAATACTTATGTATCGATACAT
1 TGTATCGATAAAATACTTATGTATCAATACAT
*
45348 TGTATCGATACAAA-ACTTATGTATTAATACA
1 TGTATCGATA-AAATACTTATGTATCAATACA
45379 AATTGTTAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
32 25 0.89
33 3 0.11
ACGTcount: A:0.40, C:0.13, G:0.11, T:0.37
Consensus pattern (32 bp):
TGTATCGATAAAATACTTATGTATCAATACAT
Found at i:45442 original size:21 final size:21
Alignment explanation
Indices: 45416--45492 Score: 102
Period size: 21 Copynumber: 3.7 Consensus size: 21
45406 GTTGGGACCC
* *
45416 TGTATCGATACATTTGTA-AGA
1 TGTATCGATACA-TTCTACAAA
*
45437 TGTATCGATACATTCCACAAA
1 TGTATCGATACATTCTACAAA
*
45458 TGTATCAATACATTCTACAAA
1 TGTATCGATACATTCTACAAA
45479 TGTATCGATACATT
1 TGTATCGATACATT
45493 TGGATAAATT
Statistics
Matches: 49, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
20 3 0.06
21 46 0.94
ACGTcount: A:0.36, C:0.17, G:0.12, T:0.35
Consensus pattern (21 bp):
TGTATCGATACATTCTACAAA
Found at i:46418 original size:55 final size:55
Alignment explanation
Indices: 46323--46638 Score: 377
Period size: 55 Copynumber: 5.7 Consensus size: 55
46313 ATAAAGTGTA
* * * * * * *
46323 TCCTGCTCATTGAGAAGTAAAAAGTGCTACCAACTCGTGTGGGCTTTGAAAGGCG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* * *
46378 TCCTACTCTTTGAGGACTGAAAGGTGCCACCAACGTGTGTGGGCTTT-AAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAA-AGGCG
* * *
46433 TCCTGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTAAAAGGTG
1 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* * *
46488 TCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTATGTGGGCTTTGAAAGGGG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* *
46543 TCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCA
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTG-AAAG-----GCG
46604 TCCTGCTCTTTGAGGACT-AAAGGTGCCACCAACTT
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTT
46639 CGTCCCCACA
Statistics
Matches: 229, Mismatches: 22, Indels: 15
0.86 0.08 0.06
Matches are distributed among these distances:
54 6 0.03
55 178 0.78
56 10 0.04
60 17 0.07
61 18 0.08
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (55 bp):
TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
Found at i:46537 original size:29 final size:28
Alignment explanation
Indices: 46457--46593 Score: 83
Period size: 26 Copynumber: 4.9 Consensus size: 28
46447 GACTGGAAAA
*
46457 TGCCACCAACTTGTGTGGGCTTTAAAAGG
1 TGCCACCAACTT-TGTGGGCTTTGAAAGG
** *
46486 TGTCCTGC-TCTTTG-GGGAC--TGAAAGG
1 TG-CCACCAACTTTGTGGG-CTTTGAAAGG
46512 TGCCACCAACTTATGTGGGCTTTGAAAGG
1 TGCCACCAACTT-TGTGGGCTTTGAAAGG
* ** *
46541 GGTCCTGC-TCTTTG-GGGAC--TGAAAGG
1 TG-CCACCAACTTTGTGGG-CTTTGAAAGG
46567 TGCCACCAACTTGTGTGGGCTTTGAAA
1 TGCCACCAACTT-TGTGGGCTTTGAAA
46594 AGAAAAAGCA
Statistics
Matches: 79, Mismatches: 15, Indels: 28
0.65 0.12 0.23
Matches are distributed among these distances:
25 6 0.08
26 22 0.28
27 12 0.15
28 12 0.15
29 21 0.27
30 6 0.08
ACGTcount: A:0.20, C:0.20, G:0.31, T:0.28
Consensus pattern (28 bp):
TGCCACCAACTTTGTGGGCTTTGAAAGG
Found at i:47345 original size:55 final size:55
Alignment explanation
Indices: 47261--47576 Score: 379
Period size: 55 Copynumber: 5.7 Consensus size: 55
47251 ATAAAGTGTA
* * * * * *
47261 TCCTACTCATTGAGGAGTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* *
47316 TCCTACTCTTTGAGGACTGAAAGGTGCCACCAA-TGTGTGTGGGCTTT-AAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACT-TGTGTGGGCTTTGAA-AGGCG
* * *
47371 TCCTGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTAAAAGGTG
1 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* * *
47426 TCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTATGTGGGCTTTGAAAGGGG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* *
47481 TCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGGAAAAGCA
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTG-AAA-G----GCG
47542 TCCTGCTCTTTGAGGACT-AAAGGTGCCACCAACTT
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTT
47577 CGTCCCCACA
Statistics
Matches: 232, Mismatches: 17, Indels: 19
0.87 0.06 0.07
Matches are distributed among these distances:
54 7 0.03
55 179 0.77
56 10 0.04
57 1 0.00
60 17 0.07
61 18 0.08
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (55 bp):
TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
Found at i:47475 original size:29 final size:28
Alignment explanation
Indices: 47395--47531 Score: 83
Period size: 26 Copynumber: 4.9 Consensus size: 28
47385 GACTGGAAAA
*
47395 TGCCACCAACTTGTGTGGGCTTTAAAAGG
1 TGCCACCAACTT-TGTGGGCTTTGAAAGG
** *
47424 TGTCCTGC-TCTTTG-GGGAC--TGAAAGG
1 TG-CCACCAACTTTGTGGG-CTTTGAAAGG
47450 TGCCACCAACTTATGTGGGCTTTGAAAGG
1 TGCCACCAACTT-TGTGGGCTTTGAAAGG
* ** *
47479 GGTCCTGC-TCTTTG-GGGAC--TGAAAGG
1 TG-CCACCAACTTTGTGGG-CTTTGAAAGG
47505 TGCCACCAACTTGTGTGGGCTTTGAAA
1 TGCCACCAACTT-TGTGGGCTTTGAAA
47532 AGGAAAAGCA
Statistics
Matches: 79, Mismatches: 15, Indels: 28
0.65 0.12 0.23
Matches are distributed among these distances:
25 6 0.08
26 22 0.28
27 12 0.15
28 12 0.15
29 21 0.27
30 6 0.08
ACGTcount: A:0.20, C:0.20, G:0.31, T:0.28
Consensus pattern (28 bp):
TGCCACCAACTTTGTGGGCTTTGAAAGG
Found at i:48293 original size:55 final size:55
Alignment explanation
Indices: 48198--48513 Score: 404
Period size: 55 Copynumber: 5.7 Consensus size: 55
48188 ATAAAGTGTA
* * * * *
48198 TCCTGCTCATTGAGGAGTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* * *
48253 TCCTACTCTTTGAGGACTGAAAGGTGCCACCAACGTGTGTGGGCTTT-AAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAA-AGGCG
* * *
48308 TCCTGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTAAAAGGTG
1 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* *
48363 TCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGGG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* *
48418 TCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCA
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTG-AAAG-----GCG
48479 TCCTGCTCTTTGAGGACT-AAAGGTGCCACCAACTT
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTT
48514 CGTCCCCACA
Statistics
Matches: 233, Mismatches: 18, Indels: 15
0.88 0.07 0.06
Matches are distributed among these distances:
54 6 0.03
55 182 0.78
56 10 0.04
60 17 0.07
61 18 0.08
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (55 bp):
TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
Found at i:48320 original size:937 final size:937
Alignment explanation
Indices: 45621--63561 Score: 33729
Period size: 937 Copynumber: 19.2 Consensus size: 937
45611 TCGGGCGCCG
*
45621 TTGGGGACAGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGA
1 TTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGA
45686 GGACTAAAGGTGCCACCAACTTCGTCCCCACATATATCGAATCCTCCACCTACTAGCTAGGCCTT
66 GGACTAAAGGTGCCACCAACTTCGTCCCCACATATATCGAATCCTCCACCTACTAGCTAGGCCTT
* * * *
45751 AAATTGTCTAAAATT-G-TC---TAAAATGAGGTGTCTACAGCTGCCCCTATTTGGCCGTTTCTG
131 AAATTGTCGAAAATTGGCCCGGACAAAATGAGGTGTCTACAGCTGCCCCTCTTTGGCCGTTTCTG
45811 AGTATCAGGAACAGGGCAAAGACAAATAGACACCATTTTATCCGCGGCCGCATGTTGTGACCTTA
196 AGTATCAGGAACAGGGCAAAGACAAATAGACACCATTTTATCCGCGGCCGCATGTTGTGACCTTA
* *
45876 GAGTGATTAAACAAGAGGTTTAATTAAAGCTTCACCATGATGGAGGGTGAATTGGCGACGGTTTC
261 GAGTGATTAAACAAGAGGTTTAATTAAAGCTTCACCATGATGGAGGGTGTATTGGCGACGGTTCC
45941 GATGGAAAAATGAGTTTGTAGGGTTTGT-CCCCCTACTAGGTTTTGAGATTTTCTAAGGCTTGAC
326 GATGGAAAAATGAGTTTGTAGGGTTTGTCCCCCCTACTAGGTTTTGAGATTTTCTAAGGCTTGAC
*
46005 CTCTTTAGACAGGTGTTGGTTACTACAGGCTTTGGGAAGGTTTGCCACTAACTTGTGTGGGCTTT
391 CTCCTTAGACAGGTGTTGGTTACTACAGGCTTTGGGAAGGTTTGCCACTAACTTGTGTGGGCTTT
46070 TTGGGTGCTGCCAACTTGTGCAAACTTTAGGAGGGGAAAGAAATGGAAAGGGTGTCCACTTTTCA
456 TTGGGTGCTGCCAACTTGTGCAAACTTTAGGAGGGGAAAGAAATGGAAAGGGTGTCCACTTTTCA
46135 AGGACAAAGGAAAAGAGGATGAAATGGGTCTTGCTCCTTGAAGACCAAGGAAGAGAAGAAAAGGA
521 AGGACAAAGGAAAAGAGGATGAAATGGGTCTTGCTCCTTGAAGACCAAGGAAGAGAAGAAAAGGA
46200 AAGTGTCCTGCTTCTTGAGGACAAAGTGAAAAAGAGTACGTCCCATTTTCCAAGGACAAAGGAAA
586 AAGTGTCCTGCTTCTTGAGGACAAAGTGAAAAAGAGTACGTCCCATTTTCCAAGGACAAAGGAAA
46265 AAGGGAAATGAAATACGTCCTGCTCTCTGAGGACAAAGAAAGAGGAAAATAAAGTGTATCCTGCT
651 AAGGGAAATGAAATACGTCCTGCTCTCTGAGGACAAAGAAAGAGGAAAATAAAGTGTATCCTGCT
* *
46330 CATTGAGAAGTAAAAAGTGCTACCAACTCGTGTGGGCTTTGAAAGGCGTCCTACTCTTTGAGGAC
716 CATTGAGGAGTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTACTCTTTGAGGAC
46395 TGAAAGGTGCCACCAACGTGTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGAGGACTGGAAAATGC
781 TGAAAGGTGCCACCAACGTGTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGAGGACTGGAAAATGC
*
46460 CACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTA
846 CACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTG
46525 TGTGGGCTTTGAAAGGGGTCCTGCTCT
911 TGTGGGCTTTGAAAGGGGTCCTGCTCT
46552 TTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGA
1 TTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGA
46617 GGACTAAAGGTGCCACCAACTTCGTCCCCACATATATCGAATCCTCCACCTACTAGCTAGGCCTT
66 GGACTAAAGGTGCCACCAACTTCGTCCCCACATATATCGAATCCTCCACCTACTAGCTAGGCCTT
* * *
46682 AAATTGTCAAAAATTGGCTCGGACAAAATGAGGTGTCTGCAGCTGCCCCTCTTTGGCCGTTTCTG
131 AAATTGTCGAAAATTGGCCCGGACAAAATGAGGTGTCTACAGCTGCCCCTCTTTGGCCGTTTCTG
*
46747 AGTATCAGGAACAGGGCAAAGACAAATAGACACCATTTTATCCGCGGCCTCATGTTGTGACCTTA
196 AGTATCAGGAACAGGGCAAAGACAAATAGACACCATTTTATCCGCGGCCGCATGTTGTGACCTTA
*
46812 GAGTGATTAAACAAGAGGTTTAATTAAAGCTTCACCATGATGGAGGGTGTATTGGCGACGGTTTC
261 GAGTGATTAAACAAGAGGTTTAATTAAAGCTTCACCATGATGGAGGGTGTATTGGCGACGGTTCC
46877 GATGGAAAAATGAGTTTGTAAGGGTTTGTCCCCCCTACTAGGTTTTGAGATTTTCTAAGGCTTGA
326 GATGGAAAAATGAGTTTGT-AGGGTTTGTCCCCCCTACTAGGTTTTGAGATTTTCTAAGGCTTGA
46942 CCTCCTTAGACAGGTGTTGGTTACTACAGGCTTTGGGAAGGTTTGCCACTAACTTGTGTGGGCTT
390 CCTCCTTAGACAGGTGTTGGTTACTACAGGCTTTGGGAAGGTTTGCCACTAACTTGTGTGGGCTT
*
47007 TTTGGGTGCTGCTAACTTGTGCAAACTTTAGGAGGGGAAAGAAATGGAAAGGGTGTCCACTTTTC
455 TTTGGGTGCTGCCAACTTGTGCAAACTTTAGGAGGGGAAAGAAATGGAAAGGGTGTCCACTTTTC
47072 AAGGACAAAGGAAAAGAGGATGAAATGGGTCTTGCTCCTTGAAGACCAAGGAAGAGAAGAAAAGG
520 AAGGACAAAGGAAAAGAGGATGAAATGGGTCTTGCTCCTTGAAGACCAAGGAAGAGAAGAAAAGG
*
47137 AAAGTGTCCTGCTTCTTGAGGATAAAGTGAAAAAGAGTACGTCCCATTTTCCAAGGACAAAGGAA
585 AAAGTGTCCTGCTTCTTGAGGACAAAGTGAAAAAGAGTACGTCCCATTTTCCAAGGACAAAGGAA
* *
47202 AAAGGGAAATGAAATATGTCCTGCTCTCTGAGGACAAAGAAAGAGGAAAATAAAGTGTATCCTAC
650 AAAGGGAAATGAAATACGTCCTGCTCTCTGAGGACAAAGAAAGAGGAAAATAAAGTGTATCCTGC
47267 TCATTGAGGAGTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTACTCTTTGAGGA
715 TCATTGAGGAGTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTACTCTTTGAGGA
*
47332 CTGAAAGGTGCCACCAATGTGTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGAGGACTGGAAAATG
780 CTGAAAGGTGCCACCAACGTGTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGAGGACTGGAAAATG
47397 CCACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTT
845 CCACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTT
*
47462 ATGTGGGCTTTGAAAGGGGTCCTGCTCT
910 GTGTGGGCTTTGAAAGGGGTCCTGCTCT
*
47490 TTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGGAAAAGCATCCTGCTCTTTGA
1 TTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGA
*
47555 GGACTAAAGGTGCCACCAACTTCGTCCCCACATATATCGAATCCTCCAGCTACTAGCTAGGCCTT
66 GGACTAAAGGTGCCACCAACTTCGTCCCCACATATATCGAATCCTCCACCTACTAGCTAGGCCTT
*
47620 AAATTGTCAAAAATTGGCCCGGACAAAATGAGGTGTCTACAGCTGCCCCTCTTTGGCCGTTTCTG
131 AAATTGTCGAAAATTGGCCCGGACAAAATGAGGTGTCTACAGCTGCCCCTCTTTGGCCGTTTCTG
47685 AGTATCAGGAACAGGGCAAAGACAAATAGACACCATTTTATCCGCGGCCGCATGTTGTGACCTTA
196 AGTATCAGGAACAGGGCAAAGACAAATAGACACCATTTTATCCGCGGCCGCATGTTGTGACCTTA
47750 GAGTGATTAAACAAGAGGTTTAATTAAAGCTTCACCATGATGGAGGGTGTATTGGCGACGGTTCC
261 GAGTGATTAAACAAGAGGTTTAATTAAAGCTTCACCATGATGGAGGGTGTATTGGCGACGGTTCC
* *
47815 GACGGAAAAATGAGTTTGTAGGGTTTGTACCCCCTACTAGGTTTTGAGATTTTCTAAGGCTTGAC
326 GATGGAAAAATGAGTTTGTAGGGTTTGTCCCCCCTACTAGGTTTTGAGATTTTCTAAGGCTTGAC
47880 CTCCTTAGACAGGTGTTGGTTACTACAGGCTTTGGGAAGGTTTGCCACTAACTTGTGTGGGCTTT
391 CTCCTTAGACAGGTGTTGGTTACTACAGGCTTTGGGAAGGTTTGCCACTAACTTGTGTGGGCTTT
47945 TTGGGTGCTGCCAACTTGTGCAAACTTTAGGAGGGGAAAGAAATGGAAAGGGTGTCCACTTTTCA
456 TTGGGTGCTGCCAACTTGTGCAAACTTTAGGAGGGGAAAGAAATGGAAAGGGTGTCCACTTTTCA
*
48010 AGGACAAAAGAAAAGAGGATGAAATGGGTCTTGCTCCTTGAAGACCAAGGAAGAGAAGAAAAGGA
521 AGGACAAAGGAAAAGAGGATGAAATGGGTCTTGCTCCTTGAAGACCAAGGAAGAGAAGAAAAGGA
48075 AAGTGTCCTGCTTCTTGAGGACAAAGTGAAAAAGAGTACGTCCCATTTTCCAAGGACAAAGGAAA
586 AAGTGTCCTGCTTCTTGAGGACAAAGTGAAAAAGAGTACGTCCCATTTTCCAAGGACAAAGGAAA
*
48140 AAGGGAAATGAAATACGTCCGGCTCTCTGAGGACAAAGAAAGAGGAAAATAAAGTGTATCCTGCT
651 AAGGGAAATGAAATACGTCCTGCTCTCTGAGGACAAAGAAAGAGGAAAATAAAGTGTATCCTGCT
48205 CATTGAGGAGTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTACTCTTTGAGGAC
716 CATTGAGGAGTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTACTCTTTGAGGAC
48270 TGAAAGGTGCCACCAACGTGTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGAGGACTGGAAAATGC
781 TGAAAGGTGCCACCAACGTGTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGAGGACTGGAAAATGC
48335 CACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTG
846 CACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTG
48400 TGTGGGCTTTGAAAGGGGTCCTGCTCT
911 TGTGGGCTTTGAAAGGGGTCCTGCTCT
48427 TTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGA
1 TTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGA
48492 GGACTAAAGGTGCCACCAACTTCGTCCCCACATATATCGAATCCTCCACCTACTAGCTAGGCCTT
66 GGACTAAAGGTGCCACCAACTTCGTCCCCACATATATCGAATCCTCCACCTACTAGCTAGGCCTT
48557 AAATTGTCGAAAATTGGCCCGGACAAAATGAGGTGTCTACAGCTGCCCCTCTTTGGCCGTTTCTG
131 AAATTGTCGAAAATTGGCCCGGACAAAATGAGGTGTCTACAGCTGCCCCTCTTTGGCCGTTTCTG
** *
48622 AGTATCAGGAACAATGCAAAGACAAATAGACACCATTTTATCCGCGGCCGCATATTGTGACCTTA
196 AGTATCAGGAACAGGGCAAAGACAAATAGACACCATTTTATCCGCGGCCGCATGTTGTGACCTTA
48687 GAGTGATTAAACAAGAGGTTTAATTAAAGCTTCACCATGATGGAGGGTGTATTGGCGACGGTTCC
261 GAGTGATTAAACAAGAGGTTTAATTAAAGCTTCACCATGATGGAGGGTGTATTGGCGACGGTTCC
48752 GATGGAAAAATGAGTTTGTAGGGTTTGTCCCCCCTACTAGGTTTTGAGATTTTCTAAGGCTTGAC
326 GATGGAAAAATGAGTTTGTAGGGTTTGTCCCCCCTACTAGGTTTTGAGATTTTCTAAGGCTTGAC
48817 CTCCTTAGACAGGTGTTGGTTACTACAGGCTTTGGGAAGGTTTGCCACTAACTTGTGTGGGCTTT
391 CTCCTTAGACAGGTGTTGGTTACTACAGGCTTTGGGAAGGTTTGCCACTAACTTGTGTGGGCTTT
48882 TTGGGTGCTGCCAACTTGTGCAAACTTTAGGAGGGGAAAGAAATGGAAAGGGTGTCCACTTTTCA
456 TTGGGTGCTGCCAACTTGTGCAAACTTTAGGAGGGGAAAGAAATGGAAAGGGTGTCCACTTTTCA
48947 AGGACAAAGGAAAAGAGGATGAAATGGGTCTTGCTCCTTGAAGACCAAGGAAGAGAAGAAAAGGA
521 AGGACAAAGGAAAAGAGGATGAAATGGGTCTTGCTCCTTGAAGACCAAGGAAGAGAAGAAAAGGA
49012 AAGTGTCCTGCTTCTTGAGGACAAAGTGAAAAAGAGTACGTCCCATTTTCCAAGGACAAAGGAAA
586 AAGTGTCCTGCTTCTTGAGGACAAAGTGAAAAAGAGTACGTCCCATTTTCCAAGGACAAAGGAAA
49077 AAGGGAAATGAAATACGTCCTGCTCTCTGAGGACAAAGAAAGAGGAAAATAAAGTGTATCCTGCT
651 AAGGGAAATGAAATACGTCCTGCTCTCTGAGGACAAAGAAAGAGGAAAATAAAGTGTATCCTGCT
49142 CATTGAGGAGTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTACTCTTTGAGGAC
716 CATTGAGGAGTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTACTCTTTGAGGAC
*
49207 TGAAAGGTGCCACCAACGTGTGTGAGCTTTAAGAGGTGTCCTGCTCTTTGAGGACTGGAAAATGC
781 TGAAAGGTGCCACCAACGTGTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGAGGACTGGAAAATGC
49272 CACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTG
846 CACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTG
49337 TGTGGGCTTTGAAAGGGGTCCTGCTCT
911 TGTGGGCTTTGAAAGGGGTCCTGCTCT
49364 TTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGA
1 TTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGA
49429 GGACTAAAGGTGCCACCAACTTCGTCCCCACATATATCGAATCCTCCACCTACTAGCTAGGCCTT
66 GGACTAAAGGTGCCACCAACTTCGTCCCCACATATATCGAATCCTCCACCTACTAGCTAGGCCTT
*
49494 AAATTGTCGAAAATTGGCCCGGACAAAATGAGGTGTCTACAGCTGCCCCTATTTGGCCGTTTCTG
131 AAATTGTCGAAAATTGGCCCGGACAAAATGAGGTGTCTACAGCTGCCCCTCTTTGGCCGTTTCTG
49559 AGTATCAGGAACAGGGCAAAGACAAATAGACACCATTTTATCCGCGGCCGCATGTTGTGACCTTA
196 AGTATCAGGAACAGGGCAAAGACAAATAGACACCATTTTATCCGCGGCCGCATGTTGTGACCTTA
49624 GAGTGATTAAACAAGAGGTTTAATTAAAGCTTCACCATGATGGAGGGTGTATTGGCGACGGTTCC
261 GAGTGATTAAACAAGAGGTTTAATTAAAGCTTCACCATGATGGAGGGTGTATTGGCGACGGTTCC
49689 GATGGAAAAATGAGTTTGTAGGGTTTGTCCCCCCTACTAGGTTTTGAGATTTTCTAAGGCTTGAC
326 GATGGAAAAATGAGTTTGTAGGGTTTGTCCCCCCTACTAGGTTTTGAGATTTTCTAAGGCTTGAC
49754 CTCCTTAGACAGGTGTTGGTTACTACAGGCTTTGGGAAGGTTTGCCACTAACTTGTGTGGGCTTT
391 CTCCTTAGACAGGTGTTGGTTACTACAGGCTTTGGGAAGGTTTGCCACTAACTTGTGTGGGCTTT
49819 TTGGGTGCTGCCAACTTGTGCAAACTTTAGGAGGGGAAAGAAATGGAAAGGGTGTCCACTTTTCA
456 TTGGGTGCTGCCAACTTGTGCAAACTTTAGGAGGGGAAAGAAATGGAAAGGGTGTCCACTTTTCA
49884 AGGACAAAGGAAAAGAGGATGAAATGGGTCTTGCTCCTTGAAGACCAAGGAAGAGAAGAAAAGGA
521 AGGACAAAGGAAAAGAGGATGAAATGGGTCTTGCTCCTTGAAGACCAAGGAAGAGAAGAAAAGGA
49949 AAGTGTCCTGCTTCTTGAGGACAAAGTGAAAAAGAGTACGTCCCATTTTCCAAGGACAAAGGAAA
586 AAGTGTCCTGCTTCTTGAGGACAAAGTGAAAAAGAGTACGTCCCATTTTCCAAGGACAAAGGAAA
50014 AAGGGAAATGAAATACGTCCTGCTCTCTGAGGACAAAGAAAGAGGAAAATAAAGTGTATCCTGCT
651 AAGGGAAATGAAATACGTCCTGCTCTCTGAGGACAAAGAAAGAGGAAAATAAAGTGTATCCTGCT
50079 CATTGAGGAGTAAAAAGTGCCTACCAACTCGTGTGGGCTTTGAAAGGCGTCCTACTCTTTGAGGA
716 CATTGAGGAGTAAAAAGTGCC-ACCAACTCGTGTGGGCTTTGAAAGGCGTCCTACTCTTTGAGGA
50144 CTGAAAGGTGCCACCAACGTGTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGAGGACTGGAAAATG
780 CTGAAAGGTGCCACCAACGTGTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGAGGACTGGAAAATG
50209 CCACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTT
845 CCACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTT
50274 GTGTGGGCTTTGAAAGGGGTCCTGCTCT
910 GTGTGGGCTTTGAAAGGGGTCCTGCTCT
50302 TTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGA
1 TTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGA
50367 GGACTAAAGGTGCCACCAACTTCGTCCCCACATATATCGAATCCTCCACCTACTAGCTAGGCCTT
66 GGACTAAAGGTGCCACCAACTTCGTCCCCACATATATCGAATCCTCCACCTACTAGCTAGGCCTT
* * *
50432 AAATTGTCAAAAATTGGCTCGGACAAAATGAGGTGTCTGCAGCTGCCCCTCTTTGGCCGTTTCTG
131 AAATTGTCGAAAATTGGCCCGGACAAAATGAGGTGTCTACAGCTGCCCCTCTTTGGCCGTTTCTG
50497 AGTATCAGGAACAGGGCAAAGACAAATAGACACCATTTTATCCGCGGCCGCATGTTGTGACCTTA
196 AGTATCAGGAACAGGGCAAAGACAAATAGACACCATTTTATCCGCGGCCGCATGTTGTGACCTTA
*
50562 GAGTGATTAAACAAGAGGTTTAATTAAAGCTTCACCATGATGGAGGGTGTATTGGCGACGGTTTC
261 GAGTGATTAAACAAGAGGTTTAATTAAAGCTTCACCATGATGGAGGGTGTATTGGCGACGGTTCC
*
50627 GATGGAAAAATGAGTTTGTAAGGTTTGTCCCCCCTACTAGGTTTTGAGATTTTCTAAGGCTTGAC
326 GATGGAAAAATGAGTTTGTAGGGTTTGTCCCCCCTACTAGGTTTTGAGATTTTCTAAGGCTTGAC
50692 CTCCTTAGACAGGTGTTGGTTACTACAGGCTTTGGGAAGGTTTGCCACTAACTTGTGTGGGCTTT
391 CTCCTTAGACAGGTGTTGGTTACTACAGGCTTTGGGAAGGTTTGCCACTAACTTGTGTGGGCTTT
50757 TTGGGTGCTGCCAACTTGTGCAAACTTTAGGAGGGGAAAGAAATGGAAAGGGTGTCCACTTTTCA
456 TTGGGTGCTGCCAACTTGTGCAAACTTTAGGAGGGGAAAGAAATGGAAAGGGTGTCCACTTTTCA
50822 AGGACAAAGGAAAAGAGGATGAAATGGGTCTTGCTCCTTGAAGACCAAGGAAGAGAAGAAAAGGA
521 AGGACAAAGGAAAAGAGGATGAAATGGGTCTTGCTCCTTGAAGACCAAGGAAGAGAAGAAAAGGA
*
50887 AAGTGTCCTGCTTCTTGAGGATAAAGTGAAAAAGAGTACGTCCCATTTTCCAAGGACAAAGGAAA
586 AAGTGTCCTGCTTCTTGAGGACAAAGTGAAAAAGAGTACGTCCCATTTTCCAAGGACAAAGGAAA
50952 AAGGGAAATGAAATACGTCCTGCTCTCTGAGGACAAAGAAAGAGGAAAATAAAGTGTATCCTGCT
651 AAGGGAAATGAAATACGTCCTGCTCTCTGAGGACAAAGAAAGAGGAAAATAAAGTGTATCCTGCT
51017 CATTGAGGAGTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTACTCTTTGAGGAC
716 CATTGAGGAGTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTACTCTTTGAGGAC
51082 TGAAAGGTGCCACCAACGTGTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGAGGACTGGAAAATGC
781 TGAAAGGTGCCACCAACGTGTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGAGGACTGGAAAATGC
51147 CACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTG
846 CACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTG
51212 TGTGGGCTTTGAAAGGGGTCCTGCTCT
911 TGTGGGCTTTGAAAGGGGTCCTGCTCT
51239 TTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGA
1 TTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGA
51304 GGACTAAAGGTGCCACCAACTTCGTCCCCACATATATCGAATCCTCCAGCCTACTAGCTAGGCCT
66 GGACTAAAGGTGCCACCAACTTCGTCCCCACATATATCGAATCCTCCA-CCTACTAGCTAGGCCT
*
51369 TAAATTGTCAAAAATTGGCCCGGACAAAATGAGGTGTCTACAGCTGCCCCTCTTTGGCCGTTTCT
130 TAAATTGTCGAAAATTGGCCCGGACAAAATGAGGTGTCTACAGCTGCCCCTCTTTGGCCGTTTCT
51434 GAGTATCAGGAACAGGGCAAAGACAAATAGACACCATTTTATCCGCGGCCGCATGTTGTGACCTT
195 GAGTATCAGGAACAGGGCAAAGACAAATAGACACCATTTTATCCGCGGCCGCATGTTGTGACCTT
51499 AGAGTGATTAAACAAGAGGTTTAATTAAAGCTTCACCATGATGGAGGGTGTATTGGCGACGGTTC
260 AGAGTGATTAAACAAGAGGTTTAATTAAAGCTTCACCATGATGGAGGGTGTATTGGCGACGGTTC
*
51564 CGACTGGAAAAATGAGTTTGTAGGGTTTGTACCCCCTACTAGGTTTTGAGATTTTCTAAGGCTTG
325 CGA-TGGAAAAATGAGTTTGTAGGGTTTGTCCCCCCTACTAGGTTTTGAGATTTTCTAAGGCTTG
51629 ACCTCCTTAGACAGGTGTTGGTTACTACAGGCTTTGGGAAGGTTTGCCACTAACTTGTGTGGGCT
389 ACCTCCTTAGACAGGTGTTGGTTACTACAGGCTTTGGGAAGGTTTGCCACTAACTTGTGTGGGCT
51694 TTTTGGGTGCTGCCAACTTGTGCAAACTTTAGGAGGGGAAAGAAATGGAAAGGGTGTCCACTTTT
454 TTTTGGGTGCTGCCAACTTGTGCAAACTTTAGGAGGGGAAAGAAATGGAAAGGGTGTCCACTTTT
51759 CAAGGACAAA-GAAAAGAGGATGAAATGGGTCTTGCTCCTTGAAGACCAAGGAAGAGAAGAAAAG
519 CAAGGACAAAGGAAAAGAGGATGAAATGGGTCTTGCTCCTTGAAGACCAAGGAAGAGAAGAAAAG
51823 GAAAGTGTCCTGCTTCTTGAGGACAAAGTGAAAAAGAGTACGTCCCATTTTCCAAGGACAAAGGA
584 GAAAGTGTCCTGCTTCTTGAGGACAAAGTGAAAAAGAGTACGTCCCATTTTCCAAGGACAAAGGA
*
51888 AAAAGGGAAATGAAATACGTCCGGCTCTCTGAGGACAAAGAAAGAGGAAAATAAAGTGTATCCTG
649 AAAAGGGAAATGAAATACGTCCTGCTCTCTGAGGACAAAGAAAGAGGAAAATAAAGTGTATCCTG
51953 CTCATTGAGGAGTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTACTCTTTGAGG
714 CTCATTGAGGAGTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTACTCTTTGAGG
*
52018 ACTGAAAGGTGCCACCAACGTGTGTGGGCTTTAAGAGGTGTCCAGCTCTTTGAGGACTGGAAAAT
779 ACTGAAAGGTGCCACCAACGTGTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGAGGACTGGAAAAT
52083 GCCACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACT
844 GCCACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACT
52148 TGTGTGGGCTTTGAAAGGGGTCCTGCTCT
909 TGTGTGGGCTTTGAAAGGGGTCCTGCTCT
52177 TTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGA
1 TTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGA
52242 GGACTAAAGGTGCCACCAACTTCGTCCCCACATATATCGAATCCTCCACCTACTAGCTAGGCCTT
66 GGACTAAAGGTGCCACCAACTTCGTCCCCACATATATCGAATCCTCCACCTACTAGCTAGGCCTT
52307 AAATTGTCGAAAATTGGCCCGGACAAAATGAGGTGTCTACAGCTGCCCCTCTTTGGCCGTTTCTG
131 AAATTGTCGAAAATTGGCCCGGACAAAATGAGGTGTCTACAGCTGCCCCTCTTTGGCCGTTTCTG
** *
52372 AGTATCAGGAACAATGCAAAGACAAATAGACACCATTTTATCCGCGGCCGCATATTGTGACCTTA
196 AGTATCAGGAACAGGGCAAAGACAAATAGACACCATTTTATCCGCGGCCGCATGTTGTGACCTTA
52437 GAGTGATTAAACAAGAGGTTTAATTAAAGCTTCACCATGATGGAGGGTGTATTGGCGACGGTTCC
261 GAGTGATTAAACAAGAGGTTTAATTAAAGCTTCACCATGATGGAGGGTGTATTGGCGACGGTTCC
52502 GATGGAAAAATGAGTTTGTAGGGTTTGTCCCCCCTACTAGGTTTTGAGATTTTCTAAGGCTTGAC
326 GATGGAAAAATGAGTTTGTAGGGTTTGTCCCCCCTACTAGGTTTTGAGATTTTCTAAGGCTTGAC
52567 CTCCTTAGACAGGTGTTGGTTACTACAGGCTTTGGGAAGGTTTGCCACTAACTTGTGTGGGCTTT
391 CTCCTTAGACAGGTGTTGGTTACTACAGGCTTTGGGAAGGTTTGCCACTAACTTGTGTGGGCTTT
52632 TTGGGTGCTGCCAACTTGTGCAAACTTTAGGAGGGGAAAGAAATGGAAAGGGTGTCCACTTTTCA
456 TTGGGTGCTGCCAACTTGTGCAAACTTTAGGAGGGGAAAGAAATGGAAAGGGTGTCCACTTTTCA
52697 AGGACAAAGGAAAAGAGGATGAAATGGGTCTTGCTCCTTGAAGACCAAGGAAGAGAAGAAAAGGA
521 AGGACAAAGGAAAAGAGGATGAAATGGGTCTTGCTCCTTGAAGACCAAGGAAGAGAAGAAAAGGA
52762 AAGTGTCCTGCTTCTTGAGGACAAAGTGAAAAAGAGTACGTCCCATTTTCCAAGGACAAAGGAAA
586 AAGTGTCCTGCTTCTTGAGGACAAAGTGAAAAAGAGTACGTCCCATTTTCCAAGGACAAAGGAAA
*
52827 AAGGGAAATGAAATACGTCCTGCTCTCTGAGGACAAAGAAAGAGGAAAATAAAGTGTATCTTGCT
651 AAGGGAAATGAAATACGTCCTGCTCTCTGAGGACAAAGAAAGAGGAAAATAAAGTGTATCCTGCT
* *
52892 CATTGAGGAGTAGAATGTGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTACTCTTTGAGGAC
716 CATTGAGGAGTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTACTCTTTGAGGAC
*
52957 TGAAAGGTGCCACCAACGTGTGTGAGCTTTAAGAGGTGTCCTGCTCTTTGAGGACTGGAAAATGC
781 TGAAAGGTGCCACCAACGTGTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGAGGACTGGAAAATGC
53022 CACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTG
846 CACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTG
53087 TGTGGGCTTTGAAAGGGGTCCTGCTCT
911 TGTGGGCTTTGAAAGGGGTCCTGCTCT
53114 TTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGA
1 TTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGA
* *
53179 AGATTAAAGGTGCCACCAACTTCGTCCCCACATATATCGAATCCTCCACCTACTAGCTAGGCCTT
66 GGACTAAAGGTGCCACCAACTTCGTCCCCACATATATCGAATCCTCCACCTACTAGCTAGGCCTT
53244 AAATTGTCGAAAATTGGCCCGGACAAAATGAGGTGTCTACAGCTGCCCCTCTTTGGCCGTTTCTG
131 AAATTGTCGAAAATTGGCCCGGACAAAATGAGGTGTCTACAGCTGCCCCTCTTTGGCCGTTTCTG
53309 AGTATCAGGAACAGGGCAAAGACAAATAGACACCATTTTATCCGCGGCCGCATGTTGTGACCTTA
196 AGTATCAGGAACAGGGCAAAGACAAATAGACACCATTTTATCCGCGGCCGCATGTTGTGACCTTA
53374 GAGTGATTAAACAAGAGGTTTAATTAAAGCTTCACCATGATGGAGGGTGTATTGGCGACGGTTCC
261 GAGTGATTAAACAAGAGGTTTAATTAAAGCTTCACCATGATGGAGGGTGTATTGGCGACGGTTCC
53439 GATGGAAAAATGAGTTTGTAGGGTTTGTCCCCCCTACTAGGTTTTGAGATTTTCTAAGGCTTGAC
326 GATGGAAAAATGAGTTTGTAGGGTTTGTCCCCCCTACTAGGTTTTGAGATTTTCTAAGGCTTGAC
53504 CTCCTTAGACAGGTGTTGGTTACTACAGGCTTTGGGAAGGTTTGCCACTAACTTGTGTGGGCTTT
391 CTCCTTAGACAGGTGTTGGTTACTACAGGCTTTGGGAAGGTTTGCCACTAACTTGTGTGGGCTTT
53569 TTGGGTGCTGCCAACTTGTGCAAACTTTAGGAGGGGAAAGAAATGGAAAGGGTGTCCACTTTTCA
456 TTGGGTGCTGCCAACTTGTGCAAACTTTAGGAGGGGAAAGAAATGGAAAGGGTGTCCACTTTTCA
* *
53634 AGGACAAAGGAAAAGAGGATGAAATGGGTCTTGCTCCTTGAAGACTAAGGAAGAGAAGAAATGGA
521 AGGACAAAGGAAAAGAGGATGAAATGGGTCTTGCTCCTTGAAGACCAAGGAAGAGAAGAAAAGGA
53699 AAGTGTCCTGCTTCTTGAGGACAAAGTGAAAAAGAGTACGTCCCATTTTCCAAGGACAAAGGAAA
586 AAGTGTCCTGCTTCTTGAGGACAAAGTGAAAAAGAGTACGTCCCATTTTCCAAGGACAAAGGAAA
53764 AAGGGAAATGAAATACGTCCTGCTCTCTGAGGACAAAGAAAGAGGAAAATAAAGTGTATCCTGCT
651 AAGGGAAATGAAATACGTCCTGCTCTCTGAGGACAAAGAAAGAGGAAAATAAAGTGTATCCTGCT
53829 CATTGAGGAGTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTACTCTTTGAGGAC
716 CATTGAGGAGTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTACTCTTTGAGGAC
53894 TGAAAGGTGCCACCAACGTGTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGAGGACTGGAAAATGC
781 TGAAAGGTGCCACCAACGTGTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGAGGACTGGAAAATGC
53959 CACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTG
846 CACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTG
54024 TGTGGGCTTTGAAAGGGGTCCTGCTCT
911 TGTGGGCTTTGAAAGGGGTCCTGCTCT
54051 TTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGA
1 TTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGA
*
54116 GGACTAAAGGTGCCACCAACTTCGTCCCCACATATATCAAATCCTCCACCTACTAGCTAGGCCTT
66 GGACTAAAGGTGCCACCAACTTCGTCCCCACATATATCGAATCCTCCACCTACTAGCTAGGCCTT
*
54181 AAATTGTCGAAAATTGGCCCGGACAAAATGAGGTGTCTACAGCTGCCCCTCTTTGGTCGTTTCTG
131 AAATTGTCGAAAATTGGCCCGGACAAAATGAGGTGTCTACAGCTGCCCCTCTTTGGCCGTTTCTG
* *
54246 AGTATCAAGAACAGGGCAAAGACAAATAGACACCATTTTATCCGCGGCCGCATGTTGTGACCTCA
196 AGTATCAGGAACAGGGCAAAGACAAATAGACACCATTTTATCCGCGGCCGCATGTTGTGACCTTA
* *
54311 GAGTGATTAAACAAGAGGTTTAATTAAAGCTTCACCATGATGGAAGGTGCATTGGCGACGGTTCC
261 GAGTGATTAAACAAGAGGTTTAATTAAAGCTTCACCATGATGGAGGGTGTATTGGCGACGGTTCC
54376 GATGGAAAAATGAGTTTGTAGGGTTTGT-CCCCCTACTAGGTTTTGAGATTTTCTAAGGCTTGAC
326 GATGGAAAAATGAGTTTGTAGGGTTTGTCCCCCCTACTAGGTTTTGAGATTTTCTAAGGCTTGAC
54440 CTCCTTAGACAGGTGTTGGTTACTACAGGCTTTGGGAAGGTTTGCCACTAACTTGTGTGGGCTTT
391 CTCCTTAGACAGGTGTTGGTTACTACAGGCTTTGGGAAGGTTTGCCACTAACTTGTGTGGGCTTT
54505 TTGGGTGCTGCCAACTTGTGCAAACTTTAGGAGGGGAAAGAAATGGAAAGGGTGTCCACTTTTCA
456 TTGGGTGCTGCCAACTTGTGCAAACTTTAGGAGGGGAAAGAAATGGAAAGGGTGTCCACTTTTCA
* *
54570 AGGACAAAGGAAAAGAGGACGAAATGGGTCTTGCTCCTTGAAGACCAAGGAGGAGAAGAAAAGGA
521 AGGACAAAGGAAAAGAGGATGAAATGGGTCTTGCTCCTTGAAGACCAAGGAAGAGAAGAAAAGGA
*
54635 AAGTGTCCTGCTTCTTGAGGACAAAGTGAAAAAGAGTACGTCCCTTTTTCCAAGGACAAAGGAAA
586 AAGTGTCCTGCTTCTTGAGGACAAAGTGAAAAAGAGTACGTCCCATTTTCCAAGGACAAAGGAAA
54700 AAGGGAAATGAAATACGTCCTGCTCTCTGAGGACAAAGAAAGAGGAAAATAAAGTGTATCCTGCT
651 AAGGGAAATGAAATACGTCCTGCTCTCTGAGGACAAAGAAAGAGGAAAATAAAGTGTATCCTGCT
* * *
54765 CATTGAGGAGTAGAAAGTG-CACCAACTCGTGTGGGCTTT-AAAGGCGTCCTCCTTTTTGAGGAC
716 CATTGAGGAGTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTACTCTTTGAGGAC
54828 TGAAAGGTGCCACCAACGTGTGTGGGCTTTAAGAGGTG--CTGC-CTTTGAGGA-TGGAAAATG-
781 TGAAAGGTGCCACCAACGTGTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGAGGACTGGAAAATGC
54888 CACC-ACATTG-GTGGGCTTT-AAA-GTGTCCTGCTCTTTGGGGA-TG-AAGGTGCCACCAACTT
846 CACCAAC-TTGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTT
54947 GTGT-GGCTTT-AAAGGTGG-CCTGC-CT
910 GTGTGGGCTTTGAAAGG-GGTCCTGCTCT
** * ** * *
54972 TT-GGGACTGAAAGGTGCCAAAAACTTGTGTGCCGCTGCTTGAAGGGACTAAAGGTGCCACCAAC
1 TTGGGGACTGAAAGGTGCCACCAACTTGTGTG-GGCT--TTGAAAAGA--AAA--AG-CATC--C
* *
55036 TGATCTCTTTGAAGACTAAA-GTGCCA-CAACTTCATCCCCACATA-ATCGAATCCTCCACCTAC
56 TG--CTCTTTGAGGACTAAAGGTGCCACCAACTTCGTCCCCACATATATCGAATCCTCCACCTAC
55098 TAGCTAGGCCTT-AATTGTCGAAAATTGGCCCGGACAAAATGAGGTGTCTACAGCTGCCCCTCTT
119 TAGCTAGGCCTTAAATTGTCGAAAATTGGCCCGGACAAAATGAGGTGTCTACAGCTGCCCCTCTT
* *
55162 TGGCTGTTTCCTGAGTATCAGGAATAGGGCAAAGACAAATAGACACCA-TTTATCCGCGGCCGCA
184 TGGCCGTTT-CTGAGTATCAGGAACAGGGCAAAGACAAATAGACACCATTTTATCCGCGGCCGCA
*
55226 TGTTGTGACCTTAGAGTGATTAAACAAGAGGTTTAATTAAAGCTTCACCATGATGGAGGGTGTAC
248 TGTTGTGACCTTAGAGTGATTAAACAAGAGGTTTAATTAAAGCTTCACCATGATGGAGGGTGTAT
55291 TGGCGACGGTTCCGATGGAAAAATGAGTTTGTAGGGTTTGTCCCCCCTACTAGGTTTTGAGATTT
313 TGGCGACGGTTCCGATGGAAAAATGAGTTTGTAGGGTTTGTCCCCCCTACTAGGTTTTGAGATTT
55356 TCTAAGGCTTGACCTCCTTAGACAGGTGTTGGTTACTACAGGCTTTGGGAAGGTTTGCCACTAAC
378 TCTAAGGCTTGACCTCCTTAGACAGGTGTTGGTTACTACAGGCTTTGGGAAGGTTTGCCACTAAC
55421 TTGTGTGGGCTTTTTGGGTGCTGCCAACTTGTGCAAACTTTAGGAGGGGAAAGAAATGGAAAGGG
443 TTGTGTGGGCTTTTTGGGTGCTGCCAACTTGTGCAAACTTTAGGAGGGGAAAGAAATGGAAAGGG
55486 TGTCCACTTTTCAAGGACAAAGGAAAAGAGGATGAAATGGGTCTTGCTCCTTGAAGACCAAGGAA
508 TGTCCACTTTTCAAGGACAAAGGAAAAGAGGATGAAATGGGTCTTGCTCCTTGAAGACCAAGGAA
55551 GAGAAGAAAAGGAAAGTGTCCTGCTTCTTGAGGACAAAGTGAAAAAGAGTACGTCCCATTTTCCA
573 GAGAAGAAAAGGAAAGTGTCCTGCTTCTTGAGGACAAAGTGAAAAAGAGTACGTCCCATTTTCCA
55616 AGGACAAAGGAAAAAGGGAAATGAAATACGTCCTGCTCTCTGAGGACAAAGAAAGAGGAAAATAA
638 AGGACAAAGGAAAAAGGGAAATGAAATACGTCCTGCTCTCTGAGGACAAAGAAAGAGGAAAATAA
*
55681 AGTGTATCATGCTCATTGAGGAGTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCT
703 AGTGTATCCTGCTCATTGAGGAGTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCT
*
55746 ACTCTTTGAGGACTTAAAGGTGCCACCAACGTGTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGAG
768 ACTCTTTGAGGACTGAAAGGTGCCACCAACGTGTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGAG
55811 GACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGTGT-CTGCTCTTT-GGGACT--AAGG
833 GACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGGGGACTGAAAGG
55872 TG---CCAAC-T-TGT-GGC-TTG-AAGGGGTCCTGCTC-
898 TGCCACCAACTTGTGTGGGCTTTGAAAGGGGTCCTGCTCT
55903 TT-GGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGA
1 TTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGA
55967 GGACTAAAGGTGCCACCAACTTCGTCCCCACATATATCGAATCCTCCACCTACTAGCTAGGCCTT
66 GGACTAAAGGTGCCACCAACTTCGTCCCCACATATATCGAATCCTCCACCTACTAGCTAGGCCTT
*
56032 AAATTGTCGAAAATTGGCCCGGACAAAATGAGGTGTCTACAGCTGCCCCTCTTTGGTCGTTTCTG
131 AAATTGTCGAAAATTGGCCCGGACAAAATGAGGTGTCTACAGCTGCCCCTCTTTGGCCGTTTCTG
56097 AGTATCAGGAACAGGGCAAAGACAAATAGACACCATTTTATCCGCGGCCGCATGTTGTGACCTTA
196 AGTATCAGGAACAGGGCAAAGACAAATAGACACCATTTTATCCGCGGCCGCATGTTGTGACCTTA
*
56162 GAGTGATTAAACAAGAGGTTTAATTAAAGCTTCACCATGATGGAGGGTGTATTGGCAACGGTTCC
261 GAGTGATTAAACAAGAGGTTTAATTAAAGCTTCACCATGATGGAGGGTGTATTGGCGACGGTTCC
56227 GATGGAAAAATGAGTTTGTAGGGTTTGT-CCCCCTACTAGGTTTTGAGATTTTCTAAGGCTTGAC
326 GATGGAAAAATGAGTTTGTAGGGTTTGTCCCCCCTACTAGGTTTTGAGATTTTCTAAGGCTTGAC
* *
56291 CTCCTTAGACAGGTGTTGGTTACTACAGGCTTTGCGAAGGTTTGCCACTAACTTGTGTAGGCTTT
391 CTCCTTAGACAGGTGTTGGTTACTACAGGCTTTGGGAAGGTTTGCCACTAACTTGTGTGGGCTTT
* *
56356 TTAGGTGCTGCCAACTTGTGCAAACTTTAGGAGGGGAAAGAAATGGAAAGGGTGTCCACTTTTTA
456 TTGGGTGCTGCCAACTTGTGCAAACTTTAGGAGGGGAAAGAAATGGAAAGGGTGTCCACTTTTCA
*
56421 AGGACAAAGGAAAAGAGGATGAAATGGGTCTTGCTCCTTGAAGACCAAGGAAGAGAATAAAAGGA
521 AGGACAAAGGAAAAGAGGATGAAATGGGTCTTGCTCCTTGAAGACCAAGGAAGAGAAGAAAAGGA
56486 AAGTGTCCTGCTTCTTGAGGACAAAGTGAAAAAGAGTACGTCCCATTTTCCAAGGACAAAGGAAA
586 AAGTGTCCTGCTTCTTGAGGACAAAGTGAAAAAGAGTACGTCCCATTTTCCAAGGACAAAGGAAA
* *
56551 AAGGGAAATGAAATACGTCCTGCTCTCTGAGGATAAAGAAAGAGAAAAATAAAGTGTATCCTGCT
651 AAGGGAAATGAAATACGTCCTGCTCTCTGAGGACAAAGAAAGAGGAAAATAAAGTGTATCCTGCT
*
56616 CATTGAGGAGTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGAC
716 CATTGAGGAGTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTACTCTTTGAGGAC
56681 TGAAAGGTGCCACCAACGTGTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGAGGACTGGAAAATGC
781 TGAAAGGTGCCACCAACGTGTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGAGGACTGGAAAATGC
56746 CACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTG
846 CACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTG
56811 TGTGGGCTTTGAAAGGGGTCCTGCTCT
911 TGTGGGCTTTGAAAGGGGTCCTGCTCT
*
56838 TTAGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGA
1 TTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGA
56903 GGACTAAAGGTGCCACCAACTTCGTCCCCACATATATCGAATCCTCCACCTACTAGCTAGGCCTT
66 GGACTAAAGGTGCCACCAACTTCGTCCCCACATATATCGAATCCTCCACCTACTAGCTAGGCCTT
* *
56968 AAATTGTCGAAAATTGGCCCAGACAAAATGAGGTGTCTACAGCTGCCCCTCTTTGGTCGTTTCTG
131 AAATTGTCGAAAATTGGCCCGGACAAAATGAGGTGTCTACAGCTGCCCCTCTTTGGCCGTTTCTG
57033 AGTATCAGGAACAGGGCAAAGACAAATAGACACCATTTTATCCGCGGCCGCATGTTGTGACCTTA
196 AGTATCAGGAACAGGGCAAAGACAAATAGACACCATTTTATCCGCGGCCGCATGTTGTGACCTTA
*
57098 GAGTGATTAAACAAGAGGTTTAATTAAAGCTTCACCATGATGGAGGGTGTACTGGCGACGGTTCC
261 GAGTGATTAAACAAGAGGTTTAATTAAAGCTTCACCATGATGGAGGGTGTATTGGCGACGGTTCC
57163 GATGGAAAAATGAGTTTGTAGGGTTTGTCCCCCCTACTAGGTTTTGAGATTTTCTAAGGCTTGAC
326 GATGGAAAAATGAGTTTGTAGGGTTTGTCCCCCCTACTAGGTTTTGAGATTTTCTAAGGCTTGAC
57228 CTCCTTAGACAGGTGTTGGTTACTACAGGCTTTGGGAAGGTTTGCCACTAACTTGTGTGGGCTTT
391 CTCCTTAGACAGGTGTTGGTTACTACAGGCTTTGGGAAGGTTTGCCACTAACTTGTGTGGGCTTT
57293 TTGGGTGCTGCCAACTTGTGCAAACTTTAGGAGGGGAAAGAAATGGAAAGGGTGTCCACTTTTCA
456 TTGGGTGCTGCCAACTTGTGCAAACTTTAGGAGGGGAAAGAAATGGAAAGGGTGTCCACTTTTCA
*
57358 AGGACAAAGGAAAAGAGGATGAAATGGGTCTTGCTTCTTGAAGACCAAGGAAGAGAAGAAAAGGA
521 AGGACAAAGGAAAAGAGGATGAAATGGGTCTTGCTCCTTGAAGACCAAGGAAGAGAAGAAAAGGA
*
57423 AAGTGTCCTGCTTCTTGAGGACAAAGTGAGAAAGAGTACGTCCCATTTTCCAAGGACAAAGGAAA
586 AAGTGTCCTGCTTCTTGAGGACAAAGTGAAAAAGAGTACGTCCCATTTTCCAAGGACAAAGGAAA
57488 AAGGGAAATGAAATACGTCCTGCTCTCTGAGGACAAAGAAAGAGGAAAATAAAGTGTATCCTGCT
651 AAGGGAAATGAAATACGTCCTGCTCTCTGAGGACAAAGAAAGAGGAAAATAAAGTGTATCCTGCT
*
57553 CATTGAGGAGTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTCCTCTTTGAGGAC
716 CATTGAGGAGTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTACTCTTTGAGGAC
*
57618 TGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGAGGACTGGAAAATGC
781 TGAAAGGTGCCACCAACGTGTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGAGGACTGGAAAATGC
*
57683 CACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGGGGATTGAAAGGTGCCACCAACTTG
846 CACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTG
*
57748 TGTGGGCTTTGAAAAGGGTCCTGCTCT
911 TGTGGGCTTTGAAAGGGGTCCTGCTCT
57775 TTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGA
1 TTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGA
57840 GGACTAAAGGTGCCACCAACTTCGTCCCCACATATATCGAATCCTCCACCTACTAGCTAGGCCTT
66 GGACTAAAGGTGCCACCAACTTCGTCCCCACATATATCGAATCCTCCACCTACTAGCTAGGCCTT
**
57905 AAATTGTCGAAAATTGGCCCAAACAAAATGAGGTGTCTACAGCTGCCCCTCTTTGGCCGTTTCTG
131 AAATTGTCGAAAATTGGCCCGGACAAAATGAGGTGTCTACAGCTGCCCCTCTTTGGCCGTTTCTG
57970 AGTATCAGGAACAGGGCAAAGACAAATAGACACCATTTTATCCGCGGCCGCATGTTGTGACCTTA
196 AGTATCAGGAACAGGGCAAAGACAAATAGACACCATTTTATCCGCGGCCGCATGTTGTGACCTTA
58035 GAGTGATTAAACAAGAGGTTTAATTAAAGCTTCACCATGATGGAGGGTGTATTGGCGACGGTTCC
261 GAGTGATTAAACAAGAGGTTTAATTAAAGCTTCACCATGATGGAGGGTGTATTGGCGACGGTTCC
58100 GATGGAAAAATGAGTTTGTAGGGTTTGTCCCCCCTACTAGGTTTTGAGATTTTCTAAGGCTTGAC
326 GATGGAAAAATGAGTTTGTAGGGTTTGTCCCCCCTACTAGGTTTTGAGATTTTCTAAGGCTTGAC
58165 CTCCTTAGACAGGTGTTGGTTACTACAGGCTTTGGGAAGGTTTGCCACTAACTTGTGTGGGCTTT
391 CTCCTTAGACAGGTGTTGGTTACTACAGGCTTTGGGAAGGTTTGCCACTAACTTGTGTGGGCTTT
58230 TTGGGTGCTGCCAACTTGTGCAAACTTTAGGAGGGGAAAGAAATGGAAAGGGTGTCCACTTTTCA
456 TTGGGTGCTGCCAACTTGTGCAAACTTTAGGAGGGGAAAGAAATGGAAAGGGTGTCCACTTTTCA
*
58295 AGGACAAAGGAAAAGAGGATGAAATGGGTCTTGCTTCTTGAAGACCAAGGAAGAGAAGAAAAGGA
521 AGGACAAAGGAAAAGAGGATGAAATGGGTCTTGCTCCTTGAAGACCAAGGAAGAGAAGAAAAGGA
*
58360 AAGTGTCCTGCTTCTTGAGGACAAAGTGAGAAAGAGTACGTCCCATTTTCCAAGGACAAAGGAAA
586 AAGTGTCCTGCTTCTTGAGGACAAAGTGAAAAAGAGTACGTCCCATTTTCCAAGGACAAAGGAAA
58425 AAGGGAAATGAAATACGTCCTGCTCTCTGAGGACAAAGAAAGAGGAAAATAAAGTGTATCCTGCT
651 AAGGGAAATGAAATACGTCCTGCTCTCTGAGGACAAAGAAAGAGGAAAATAAAGTGTATCCTGCT
*
58490 CATTGAGGAGTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTCCTCTTTGAGGAC
716 CATTGAGGAGTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTACTCTTTGAGGAC
*
58555 TGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGAGGACTGGAAAATGC
781 TGAAAGGTGCCACCAACGTGTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGAGGACTGGAAAATGC
*
58620 CACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGGGGATTGAAAGGTGCCACCAACTTG
846 CACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTG
*
58685 TGTGGGCTTTGAAAAGGGTCCTGCTCT
911 TGTGGGCTTTGAAAGGGGTCCTGCTCT
58712 TTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGA
1 TTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGA
58777 GGACTAAAGGTGCCACCAACTTCGTCCCCACATATATCGAATCCTCCACCTACTAGCTAGGCCTT
66 GGACTAAAGGTGCCACCAACTTCGTCCCCACATATATCGAATCCTCCACCTACTAGCTAGGCCTT
**
58842 AAATTGTCGAAAATTGGCCCAAACAAAATGAGGTGTCTACAGCTGCCCCTCTTTGGCCGTTTCTG
131 AAATTGTCGAAAATTGGCCCGGACAAAATGAGGTGTCTACAGCTGCCCCTCTTTGGCCGTTTCTG
58907 AGTATCAGGAACAGGGCAAAGACAAATAGACACCATTTTATCCGCGGCCGCATGTTGTGACCTTA
196 AGTATCAGGAACAGGGCAAAGACAAATAGACACCATTTTATCCGCGGCCGCATGTTGTGACCTTA
*
58972 GAGTGATTAAACAAGAGGTTTAATTAAAGCTTCACCATGATAGAGGGTGTATTGGCGACGGTTCC
261 GAGTGATTAAACAAGAGGTTTAATTAAAGCTTCACCATGATGGAGGGTGTATTGGCGACGGTTCC
*
59037 GAGGGAAAAATGAGTTTGTAGGGTTTGTCCCCCCTACTAGGTTTTGAGATTTTCTAAGGCTTGAC
326 GATGGAAAAATGAGTTTGTAGGGTTTGTCCCCCCTACTAGGTTTTGAGATTTTCTAAGGCTTGAC
59102 CTCCTTAGACAGGTGTTGGTTACTACAGGCTTTGGGAAGGTTTGCCACTAACTTGTGTGGGCTTT
391 CTCCTTAGACAGGTGTTGGTTACTACAGGCTTTGGGAAGGTTTGCCACTAACTTGTGTGGGCTTT
59167 TTGGGTGCTGCCAACTTGTGCAAACTTTAGGAGGGGAAAGAAATGGAAAGGGTGTCCACTTTTCA
456 TTGGGTGCTGCCAACTTGTGCAAACTTTAGGAGGGGAAAGAAATGGAAAGGGTGTCCACTTTTCA
*
59232 AGGACAAAGGAAAAGAGGATGAAATGGGTCTTGCTCCTTGAAGACTAAGGAAGAGAAGAAAAGGA
521 AGGACAAAGGAAAAGAGGATGAAATGGGTCTTGCTCCTTGAAGACCAAGGAAGAGAAGAAAAGGA
59297 AAGTGTCCTGCTTCTTGAGGACAAAGTGAAAAAGAGTACGTCCCATTTTCCAAGGACAAAGGAAA
586 AAGTGTCCTGCTTCTTGAGGACAAAGTGAAAAAGAGTACGTCCCATTTTCCAAGGACAAAGGAAA
* * *
59362 AAGGGAAATGAAATATGTCCTGCTCTTTGAGGATAAAGAAAGAGGAAAATAAAGTGTATCCTGCT
651 AAGGGAAATGAAATACGTCCTGCTCTCTGAGGACAAAGAAAGAGGAAAATAAAGTGTATCCTGCT
* *
59427 CATTGAGGAGTAAAAAGTGCCACCAACTCATGTGGGCTTTGAAAGGCGTCCGACTCTTTGAGGAC
716 CATTGAGGAGTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTACTCTTTGAGGAC
* *
59492 TTAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGAGGACTGGAAAATGC
781 TGAAAGGTGCCACCAACGTGTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGAGGACTGGAAAATGC
*
59557 CACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGGGGACAGAAAGGTGCCACCAACTTG
846 CACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTG
59622 TGTGGGCTTTGAAAGGGGTCCTGCTCT
911 TGTGGGCTTTGAAAGGGGTCCTGCTCT
* ** *
59649 TTGGGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTT-AAAAG-----GTGTCCTGCTCTTTGG
1 TTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGA
* *
59708 GGACTAAAGGTGTCACCCACTTCGTCCCCACATATATCGAATCCTCCACCTACTAGCTAGGCCTT
66 GGACTAAAGGTGCCACCAACTTCGTCCCCACATATATCGAATCCTCCACCTACTAGCTAGGCCTT
* *
59773 AAATTGTCAAAAATTGGCCCGGACAAAATGAGGTGTCTGCAGCTGCCCCTCTTTGGCCGTTTCTG
131 AAATTGTCGAAAATTGGCCCGGACAAAATGAGGTGTCTACAGCTGCCCCTCTTTGGCCGTTTCTG
*
59838 AGTATCAGGAACAGGGCAAAGACAAATAGACACCATTTTATCCGCGGCCGCAAGTTGTGACCTTA
196 AGTATCAGGAACAGGGCAAAGACAAATAGACACCATTTTATCCGCGGCCGCATGTTGTGACCTTA
*
59903 GAGTGATTAAACAAGAGGTTTAATTAAAGCTTCACCATGATGGAAGGTGTATTGGCGACGGTTCC
261 GAGTGATTAAACAAGAGGTTTAATTAAAGCTTCACCATGATGGAGGGTGTATTGGCGACGGTTCC
*
59968 GATGGAAAAATGAGTTTGTAGGGTTTGTCCCCCCTACTAGGTTTTGAGATTTTCTAATGCTTGAC
326 GATGGAAAAATGAGTTTGTAGGGTTTGTCCCCCCTACTAGGTTTTGAGATTTTCTAAGGCTTGAC
** *
60033 CTTTTTAGATAGGTGTTGGTTACTACAGGCTTTGGGAAGGTTTGCCACTAACTTGTGTGGGCTTT
391 CTCCTTAGACAGGTGTTGGTTACTACAGGCTTTGGGAAGGTTTGCCACTAACTTGTGTGGGCTTT
60098 TTGGGTGCTGCCAACTTGTGCAAACTTTAGGAGGGGAAAGAAATGGAAAGGGTGTCCACTTTTCA
456 TTGGGTGCTGCCAACTTGTGCAAACTTTAGGAGGGGAAAGAAATGGAAAGGGTGTCCACTTTTCA
60163 AGGACAAAGGAAAAGAGGATGAAATGGGTCTTGCTCCTTGAAGACCAAGGAAGAGAAGAAAAGGA
521 AGGACAAAGGAAAAGAGGATGAAATGGGTCTTGCTCCTTGAAGACCAAGGAAGAGAAGAAAAGGA
60228 AAGTGTCCTGCTTCTTGAGGACAAAGTGAAAAAGAGTACGTCCCATTTTCCAAGGACAAAGGAAA
586 AAGTGTCCTGCTTCTTGAGGACAAAGTGAAAAAGAGTACGTCCCATTTTCCAAGGACAAAGGAAA
*
60293 AAGGGAAATAAAATACGTCCTGCTCTCTGAGGACAAAGAAAGAGGAAAATAAAGTGTATCCTGCT
651 AAGGGAAATGAAATACGTCCTGCTCTCTGAGGACAAAGAAAGAGGAAAATAAAGTGTATCCTGCT
60358 CATTGAGGAGTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTACTCTTTGAGGAC
716 CATTGAGGAGTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTACTCTTTGAGGAC
*
60423 TGAAAGGTGCCACCAACGTGTGTGGGCTTTAAGAGGTGTCCTGTTCTTTGAGGACTGGAAAATGC
781 TGAAAGGTGCCACCAACGTGTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGAGGACTGGAAAATGC
60488 CACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTG
846 CACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTG
60553 TGTGGGCTTTGAAAGGGGTCCTGCTCT
911 TGTGGGCTTTGAAAGGGGTCCTGCTCT
60580 TTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGA
1 TTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGA
60645 GGACTAAAGGTGCCACCAACTTCGTCCCCACATATATCGAATCCTCCACCTACTAGCTAGGCCTT
66 GGACTAAAGGTGCCACCAACTTCGTCCCCACATATATCGAATCCTCCACCTACTAGCTAGGCCTT
*
60710 AAATTGTCGAAAATTGGCCCGGACAAAATGAGGTGTCTCCAGCTGCCCCTCTTTGGCCGTTTCTG
131 AAATTGTCGAAAATTGGCCCGGACAAAATGAGGTGTCTACAGCTGCCCCTCTTTGGCCGTTTCTG
* * *
60775 AGTATCAGGAACAGGGTAAAGACAAATAGACACCATTTTATCTGCGGCCACATGTTGTGACCTTA
196 AGTATCAGGAACAGGGCAAAGACAAATAGACACCATTTTATCCGCGGCCGCATGTTGTGACCTTA
60840 GAGTGATTAAACAAGAGGTTTAATTAAAGCTTCACCATGATGGAGGGTGTATTGGCGACGGTTCC
261 GAGTGATTAAACAAGAGGTTTAATTAAAGCTTCACCATGATGGAGGGTGTATTGGCGACGGTTCC
60905 GATGGAAAAATGAGTTTGTAGGGTTTGTCCCCCCTACTAGGTTTTGAGATTTTCTAAGGCTTGAC
326 GATGGAAAAATGAGTTTGTAGGGTTTGTCCCCCCTACTAGGTTTTGAGATTTTCTAAGGCTTGAC
*
60970 CTCCTTAGACAGGTGTTGGTTACTACAGGCTTTGGGAAGGTTTGCCGCTAACTTGTGTGGGCTTT
391 CTCCTTAGACAGGTGTTGGTTACTACAGGCTTTGGGAAGGTTTGCCACTAACTTGTGTGGGCTTT
* * *
61035 TTGGGTGCTACCAACTTGTGCAAACTTTAGGACGGGAAAGAAATGGAAAGGGTGTCCATTTTTCA
456 TTGGGTGCTGCCAACTTGTGCAAACTTTAGGAGGGGAAAGAAATGGAAAGGGTGTCCACTTTTCA
*
61100 AGGACAAAGGATAAGAGGATGAAATGGGTCTTGCTCCTTGAAGACCAAGGAAGAGAAGAAAAGGA
521 AGGACAAAGGAAAAGAGGATGAAATGGGTCTTGCTCCTTGAAGACCAAGGAAGAGAAGAAAAGGA
*
61165 AAGTGTCCTGCTTCTTGAGGACAAAGTGAAAAAGAGTACGTCCTATTTTCCAAGGACAAAGGAAA
586 AAGTGTCCTGCTTCTTGAGGACAAAGTGAAAAAGAGTACGTCCCATTTTCCAAGGACAAAGGAAA
*
61230 AAGGAAAATGAAATACGTCCTGCTCTCTGAGGACAAAGAAAGAGGAAAATAAAGTGTATCCTGCT
651 AAGGGAAATGAAATACGTCCTGCTCTCTGAGGACAAAGAAAGAGGAAAATAAAGTGTATCCTGCT
* *
61295 CATTGAGGAGTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGAC
716 CATTGAGGAGTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTACTCTTTGAGGAC
* *
61360 TGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGAGGACTGGAAAATGC
781 TGAAAGGTGCCACCAACGTGTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGAGGACTGGAAAATGC
61425 CACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTG
846 CACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTG
61490 TGTGGGCTTTGAAAGGGGTCCTGCTCT
911 TGTGGGCTTTGAAAGGGGTCCTGCTCT
61517 TTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGA
1 TTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGA
61582 GGACTAAAGGTGCCACCAACTTCGTCCCCACATATATCGAATCCTCCACCTACTAGCTAGGCCTT
66 GGACTAAAGGTGCCACCAACTTCGTCCCCACATATATCGAATCCTCCACCTACTAGCTAGGCCTT
* *
61647 AAATTGTCGAAAATTGGCCCGGACAAAATGAGGTGTCTCCAGCTGCCCCTCTTTGGCCATTTCTG
131 AAATTGTCGAAAATTGGCCCGGACAAAATGAGGTGTCTACAGCTGCCCCTCTTTGGCCGTTTCTG
* *
61712 AGTATCAGGAACAGGGCAAAGACAAATAGACACCATTTTATCTGCGGCCACATGTTGTGACCTTA
196 AGTATCAGGAACAGGGCAAAGACAAATAGACACCATTTTATCCGCGGCCGCATGTTGTGACCTTA
61777 GAGTGATTAAACAAGAGGTTTAATTAAAGCTTCACCATGATGGAGGGTGTATTGGCGACGGTTCC
261 GAGTGATTAAACAAGAGGTTTAATTAAAGCTTCACCATGATGGAGGGTGTATTGGCGACGGTTCC
61842 GATGGAAAAATGAGTTTGTAGGGTTTGTCCCCCCTACTAGGTTTTGAGATTTTCTAAGGCTTGAC
326 GATGGAAAAATGAGTTTGTAGGGTTTGTCCCCCCTACTAGGTTTTGAGATTTTCTAAGGCTTGAC
61907 CTCCTTAGACAGGTGTTGGTTACTACAGGCTTTGGGAAGGTTTGCCACTAACTTGTGTGGGCTTT
391 CTCCTTAGACAGGTGTTGGTTACTACAGGCTTTGGGAAGGTTTGCCACTAACTTGTGTGGGCTTT
*
61972 TTGGGTGCTGCCAACTTGTGCAAACTTTAGGAGGGAAAAGAAATGGAAAGGGTGTCCACTTTTCA
456 TTGGGTGCTGCCAACTTGTGCAAACTTTAGGAGGGGAAAGAAATGGAAAGGGTGTCCACTTTTCA
*
62037 AGGACAAAGGAAAAGAGGATGAAATGGGTCTTGCTCCTTGAAGACCAAGGAAGAGAGGAAAAGGA
521 AGGACAAAGGAAAAGAGGATGAAATGGGTCTTGCTCCTTGAAGACCAAGGAAGAGAAGAAAAGGA
*
62102 AAGTGTCCTGCTTCTTGAGGACAAAGTGAAAAAGAGTACGTCCCATTTTCCAAGGACAAATGAAA
586 AAGTGTCCTGCTTCTTGAGGACAAAGTGAAAAAGAGTACGTCCCATTTTCCAAGGACAAAGGAAA
62167 AAGGGAAATGAAATACGTCCTGCTCTCTGAGGACAAAGAAAGAGGAAAATAAAGTGTATCCTGCT
651 AAGGGAAATGAAATACGTCCTGCTCTCTGAGGACAAAGAAAGAGGAAAATAAAGTGTATCCTGCT
62232 CATTGAGGAGTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTACTCTTTGAGGAC
716 CATTGAGGAGTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTACTCTTTGAGGAC
62297 TGAAAGGTGCCACCAACGTGTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGAGGACTGGAAAATGC
781 TGAAAGGTGCCACCAACGTGTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGAGGACTGGAAAATGC
62362 CACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTG
846 CACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTG
62427 TGTGGGCTTTGAAAGGGGTCCTGCTCT
911 TGTGGGCTTTGAAAGGGGTCCTGCTCT
62454 TTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGA
1 TTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGA
62519 GGACTAAAGGTGCCACCAACTTCGTCCCCACATATATCGAATCCTCCACCTACTAGCTAGGCCTT
66 GGACTAAAGGTGCCACCAACTTCGTCCCCACATATATCGAATCCTCCACCTACTAGCTAGGCCTT
*
62584 AAATTGTCGAAAATTGGCACGGACAAAATGAGGTGTCTACAGCTGCCCCTCTTTGGCCGTTTCTG
131 AAATTGTCGAAAATTGGCCCGGACAAAATGAGGTGTCTACAGCTGCCCCTCTTTGGCCGTTTCTG
62649 AGTATCAGGAACAGGGCAAAGACAAATAGACACCATTTTATCCGCGGCCGCATGTTGTGACCTTA
196 AGTATCAGGAACAGGGCAAAGACAAATAGACACCATTTTATCCGCGGCCGCATGTTGTGACCTTA
62714 GAGTGATTAAACAAGAGGTTTAATTAAAGCTTCACCATGATGGAGGGTGTATTGGCGACGGTTCC
261 GAGTGATTAAACAAGAGGTTTAATTAAAGCTTCACCATGATGGAGGGTGTATTGGCGACGGTTCC
* * *
62779 GATGAAAAAATGAGTTTGTAGGGTTTATCCCCCCTATTAGGTTTTGAGATTTTCTAAGGCTTGAC
326 GATGGAAAAATGAGTTTGTAGGGTTTGTCCCCCCTACTAGGTTTTGAGATTTTCTAAGGCTTGAC
62844 CTCCTTAGACAGGTGTTGGTTACTACAGGCTTTGGGAAGGTTTGCCACTAACTTGTGTGGGCTTT
391 CTCCTTAGACAGGTGTTGGTTACTACAGGCTTTGGGAAGGTTTGCCACTAACTTGTGTGGGCTTT
* *
62909 TTGGGTGCTGCCAACTTGTGCAAACTTTAGGACGGGAAAGAAATGGAAAAGGGTGTCCAATTTTC
456 TTGGGTGCTGCCAACTTGTGCAAACTTTAGGAGGGGAAAGAAATGG-AAAGGGTGTCCACTTTTC
62974 AAGGACAAAGGAAAAGAGGATGAAATGGGTCTTGCTCCTTGAAGACCAAGGAAGAGAAGAAAAGG
520 AAGGACAAAGGAAAAGAGGATGAAATGGGTCTTGCTCCTTGAAGACCAAGGAAGAGAAGAAAAGG
*
63039 AAAGTGTCCTGCTTCTTGAGGACAAAGTGAAAAAAAGTACGTCCCATTTTCCAAGGACAAAGGAA
585 AAAGTGTCCTGCTTCTTGAGGACAAAGTGAAAAAGAGTACGTCCCATTTTCCAAGGACAAAGGAA
* * *
63104 AAAGGGAAATGAAATATGTCCTTCTCTCTGAGGACAAAGAAAGAGGAAAATAATGTGTATCCTGC
650 AAAGGGAAATGAAATACGTCCTGCTCTCTGAGGACAAAGAAAGAGGAAAATAAAGTGTATCCTGC
* *
63169 TCATTGAGGAGTAAAAAGTGCCACCAACTCGTG-GGGCTTTGAAAGGCGTCCTGCTCCTTGAGGA
715 TCATTGAGGAGTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTACTCTTTGAGGA
* *
63233 CTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTGTCCTACTCTTTGAGGACTGGAAAATG
780 CTGAAAGGTGCCACCAACGTGTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGAGGACTGGAAAATG
*
63298 CCACCAACTTGTGTGGGCTTTAGAAGGTGTCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTT
845 CCACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTT
63363 GTGTGGGCTTTGAAAGGGGTCCTGCTCT
910 GTGTGGGCTTTGAAAGGGGTCCTGCTCT
63391 TTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGA
1 TTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGA
**
63456 GGACTAAAGGTGCCACCAACTTCGTCCCCACATATATCGAATCCTCCACCTACCCGCTAGGCCTT
66 GGACTAAAGGTGCCACCAACTTCGTCCCCACATATATCGAATCCTCCACCTACTAGCTAGGCCTT
*
63521 AAATTGTCGAAAATTGGCCCGGACAAAATTAGGTGTCTACA
131 AAATTGTCGAAAATTGGCCCGGACAAAATGAGGTGTCTACA
63562 TTGAGCATAA
Statistics
Matches: 16655, Mismatches: 286, Indels: 132
0.98 0.02 0.01
Matches are distributed among these distances:
919 15 0.00
920 33 0.00
921 27 0.00
922 587 0.04
923 206 0.01
924 27 0.00
925 5 0.00
926 28 0.00
927 4 0.00
928 198 0.01
929 452 0.03
930 55 0.00
931 1157 0.07
932 35 0.00
933 10 0.00
934 88 0.01
935 31 0.00
936 1119 0.07
937 9553 0.57
938 2822 0.17
939 203 0.01
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.26
Consensus pattern (937 bp):
TTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGA
GGACTAAAGGTGCCACCAACTTCGTCCCCACATATATCGAATCCTCCACCTACTAGCTAGGCCTT
AAATTGTCGAAAATTGGCCCGGACAAAATGAGGTGTCTACAGCTGCCCCTCTTTGGCCGTTTCTG
AGTATCAGGAACAGGGCAAAGACAAATAGACACCATTTTATCCGCGGCCGCATGTTGTGACCTTA
GAGTGATTAAACAAGAGGTTTAATTAAAGCTTCACCATGATGGAGGGTGTATTGGCGACGGTTCC
GATGGAAAAATGAGTTTGTAGGGTTTGTCCCCCCTACTAGGTTTTGAGATTTTCTAAGGCTTGAC
CTCCTTAGACAGGTGTTGGTTACTACAGGCTTTGGGAAGGTTTGCCACTAACTTGTGTGGGCTTT
TTGGGTGCTGCCAACTTGTGCAAACTTTAGGAGGGGAAAGAAATGGAAAGGGTGTCCACTTTTCA
AGGACAAAGGAAAAGAGGATGAAATGGGTCTTGCTCCTTGAAGACCAAGGAAGAGAAGAAAAGGA
AAGTGTCCTGCTTCTTGAGGACAAAGTGAAAAAGAGTACGTCCCATTTTCCAAGGACAAAGGAAA
AAGGGAAATGAAATACGTCCTGCTCTCTGAGGACAAAGAAAGAGGAAAATAAAGTGTATCCTGCT
CATTGAGGAGTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTACTCTTTGAGGAC
TGAAAGGTGCCACCAACGTGTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGAGGACTGGAAAATGC
CACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTG
TGTGGGCTTTGAAAGGGGTCCTGCTCT
Found at i:48385 original size:26 final size:26
Alignment explanation
Indices: 48356--48443 Score: 81
Period size: 26 Copynumber: 3.3 Consensus size: 26
48346 GTGGGCTTTA
48356 AAAGGTGTCCTGCTCTTTGGGGACTG
1 AAAGGTGTCCTGCTCTTTGGGGACTG
** *
48382 AAAGGTG-CCACCAACTTGTGTGGG-CTTTG
1 AAAGGTGTCCTGC-TCTT-TG-GGGAC--TG
*
48411 AAAGGGGTCCTGCTCTTTGGGGACTG
1 AAAGGTGTCCTGCTCTTTGGGGACTG
48437 AAAGGTG
1 AAAGGTG
48444 CCACCAACTT
Statistics
Matches: 47, Mismatches: 8, Indels: 14
0.68 0.12 0.20
Matches are distributed among these distances:
25 3 0.06
26 18 0.38
27 6 0.13
28 6 0.13
29 11 0.23
30 3 0.06
ACGTcount: A:0.19, C:0.18, G:0.35, T:0.27
Consensus pattern (26 bp):
AAAGGTGTCCTGCTCTTTGGGGACTG
Found at i:49230 original size:55 final size:55
Alignment explanation
Indices: 49135--49450 Score: 395
Period size: 55 Copynumber: 5.7 Consensus size: 55
49125 ATAAAGTGTA
* * * * *
49135 TCCTGCTCATTGAGGAGTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* * * *
49190 TCCTACTCTTTGAGGACTGAAAGGTGCCACCAACGTGTGTGAGCTTT-AAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAA-AGGCG
* * *
49245 TCCTGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTAAAAGGTG
1 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* *
49300 TCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGGG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* *
49355 TCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCA
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTG-AAAG-----GCG
49416 TCCTGCTCTTTGAGGACT-AAAGGTGCCACCAACTT
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTT
49451 CGTCCCCACA
Statistics
Matches: 231, Mismatches: 20, Indels: 15
0.87 0.08 0.06
Matches are distributed among these distances:
54 6 0.03
55 180 0.78
56 10 0.04
60 17 0.07
61 18 0.08
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (55 bp):
TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
Found at i:49322 original size:26 final size:26
Alignment explanation
Indices: 49293--49380 Score: 81
Period size: 26 Copynumber: 3.3 Consensus size: 26
49283 GTGGGCTTTA
49293 AAAGGTGTCCTGCTCTTTGGGGACTG
1 AAAGGTGTCCTGCTCTTTGGGGACTG
** *
49319 AAAGGTG-CCACCAACTTGTGTGGG-CTTTG
1 AAAGGTGTCCTGC-TCTT-TG-GGGAC--TG
*
49348 AAAGGGGTCCTGCTCTTTGGGGACTG
1 AAAGGTGTCCTGCTCTTTGGGGACTG
49374 AAAGGTG
1 AAAGGTG
49381 CCACCAACTT
Statistics
Matches: 47, Mismatches: 8, Indels: 14
0.68 0.12 0.20
Matches are distributed among these distances:
25 3 0.06
26 18 0.38
27 6 0.13
28 6 0.13
29 11 0.23
30 3 0.06
ACGTcount: A:0.19, C:0.18, G:0.35, T:0.27
Consensus pattern (26 bp):
AAAGGTGTCCTGCTCTTTGGGGACTG
Found at i:50169 original size:55 final size:55
Alignment explanation
Indices: 50072--50388 Score: 397
Period size: 55 Copynumber: 5.7 Consensus size: 55
50062 ATAAAGTGTA
* * * * *
50072 TCCTGCTCATTGAGGAGTAAAAAGTGCCTACCAACTCGTGTGGGCTTTGAAAGGCG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCC-ACCAACTTGTGTGGGCTTTGAAAGGCG
* * *
50128 TCCTACTCTTTGAGGACTGAAAGGTGCCACCAACGTGTGTGGGCTTT-AAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAA-AGGCG
* * *
50183 TCCTGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTAAAAGGTG
1 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* *
50238 TCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGGG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* *
50293 TCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCA
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTG-AAAG-----GCG
50354 TCCTGCTCTTTGAGGACT-AAAGGTGCCACCAACTT
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTT
50389 CGTCCCCACA
Statistics
Matches: 233, Mismatches: 18, Indels: 16
0.87 0.07 0.06
Matches are distributed among these distances:
54 6 0.03
55 159 0.68
56 33 0.14
60 17 0.07
61 18 0.08
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (55 bp):
TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
Found at i:50260 original size:26 final size:26
Alignment explanation
Indices: 50231--50318 Score: 81
Period size: 26 Copynumber: 3.3 Consensus size: 26
50221 GTGGGCTTTA
50231 AAAGGTGTCCTGCTCTTTGGGGACTG
1 AAAGGTGTCCTGCTCTTTGGGGACTG
** *
50257 AAAGGTG-CCACCAACTTGTGTGGG-CTTTG
1 AAAGGTGTCCTGC-TCTT-TG-GGGAC--TG
*
50286 AAAGGGGTCCTGCTCTTTGGGGACTG
1 AAAGGTGTCCTGCTCTTTGGGGACTG
50312 AAAGGTG
1 AAAGGTG
50319 CCACCAACTT
Statistics
Matches: 47, Mismatches: 8, Indels: 14
0.68 0.12 0.20
Matches are distributed among these distances:
25 3 0.06
26 18 0.38
27 6 0.13
28 6 0.13
29 11 0.23
30 3 0.06
ACGTcount: A:0.19, C:0.18, G:0.35, T:0.27
Consensus pattern (26 bp):
AAAGGTGTCCTGCTCTTTGGGGACTG
Found at i:51105 original size:55 final size:55
Alignment explanation
Indices: 51010--51325 Score: 404
Period size: 55 Copynumber: 5.7 Consensus size: 55
51000 ATAAAGTGTA
* * * * *
51010 TCCTGCTCATTGAGGAGTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* * *
51065 TCCTACTCTTTGAGGACTGAAAGGTGCCACCAACGTGTGTGGGCTTT-AAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAA-AGGCG
* * *
51120 TCCTGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTAAAAGGTG
1 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* *
51175 TCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGGG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* *
51230 TCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCA
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTG-AAAG-----GCG
51291 TCCTGCTCTTTGAGGACT-AAAGGTGCCACCAACTT
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTT
51326 CGTCCCCACA
Statistics
Matches: 233, Mismatches: 18, Indels: 15
0.88 0.07 0.06
Matches are distributed among these distances:
54 6 0.03
55 182 0.78
56 10 0.04
60 17 0.07
61 18 0.08
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (55 bp):
TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
Found at i:51197 original size:26 final size:26
Alignment explanation
Indices: 51168--51255 Score: 81
Period size: 26 Copynumber: 3.3 Consensus size: 26
51158 GTGGGCTTTA
51168 AAAGGTGTCCTGCTCTTTGGGGACTG
1 AAAGGTGTCCTGCTCTTTGGGGACTG
** *
51194 AAAGGTG-CCACCAACTTGTGTGGG-CTTTG
1 AAAGGTGTCCTGC-TCTT-TG-GGGAC--TG
*
51223 AAAGGGGTCCTGCTCTTTGGGGACTG
1 AAAGGTGTCCTGCTCTTTGGGGACTG
51249 AAAGGTG
1 AAAGGTG
51256 CCACCAACTT
Statistics
Matches: 47, Mismatches: 8, Indels: 14
0.68 0.12 0.20
Matches are distributed among these distances:
25 3 0.06
26 18 0.38
27 6 0.13
28 6 0.13
29 11 0.23
30 3 0.06
ACGTcount: A:0.19, C:0.18, G:0.35, T:0.27
Consensus pattern (26 bp):
AAAGGTGTCCTGCTCTTTGGGGACTG
Found at i:52043 original size:55 final size:55
Alignment explanation
Indices: 51948--52263 Score: 395
Period size: 55 Copynumber: 5.7 Consensus size: 55
51938 ATAAAGTGTA
* * * * *
51948 TCCTGCTCATTGAGGAGTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* * *
52003 TCCTACTCTTTGAGGACTGAAAGGTGCCACCAACGTGTGTGGGCTTT-AAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAA-AGGCG
* * * *
52058 TCCAGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTAAAAGGTG
1 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* *
52113 TCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGGG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* *
52168 TCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCA
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTG-AAAG-----GCG
52229 TCCTGCTCTTTGAGGACT-AAAGGTGCCACCAACTT
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTT
52264 CGTCCCCACA
Statistics
Matches: 231, Mismatches: 20, Indels: 15
0.87 0.08 0.06
Matches are distributed among these distances:
54 6 0.03
55 180 0.78
56 10 0.04
60 17 0.07
61 18 0.08
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (55 bp):
TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
Found at i:52135 original size:26 final size:26
Alignment explanation
Indices: 52106--52193 Score: 81
Period size: 26 Copynumber: 3.3 Consensus size: 26
52096 GTGGGCTTTA
52106 AAAGGTGTCCTGCTCTTTGGGGACTG
1 AAAGGTGTCCTGCTCTTTGGGGACTG
** *
52132 AAAGGTG-CCACCAACTTGTGTGGG-CTTTG
1 AAAGGTGTCCTGC-TCTT-TG-GGGAC--TG
*
52161 AAAGGGGTCCTGCTCTTTGGGGACTG
1 AAAGGTGTCCTGCTCTTTGGGGACTG
52187 AAAGGTG
1 AAAGGTG
52194 CCACCAACTT
Statistics
Matches: 47, Mismatches: 8, Indels: 14
0.68 0.12 0.20
Matches are distributed among these distances:
25 3 0.06
26 18 0.38
27 6 0.13
28 6 0.13
29 11 0.23
30 3 0.06
ACGTcount: A:0.19, C:0.18, G:0.35, T:0.27
Consensus pattern (26 bp):
AAAGGTGTCCTGCTCTTTGGGGACTG
Found at i:52980 original size:55 final size:55
Alignment explanation
Indices: 52908--53155 Score: 374
Period size: 55 Copynumber: 4.5 Consensus size: 55
52898 GGAGTAGAAT
* * *
52908 GTGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTACTCTTTGAGGACTGAAAG
1 GTGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGACTGAAAG
* *
52963 GTGCCACCAACGTGTGTGAGCTTT-AAGAGGTGTCCTGCTCTTTGAGGACTGGAAA-
1 GTGCCACCAACTTGTGTGGGCTTTGAA-AGGTGTCCTGCTCTTTGAGGACT-GAAAG
* * *
53018 ATGCCACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGGGGACTGAAAG
1 GTGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGACTGAAAG
* *
53073 GTGCCACCAACTTGTGTGGGCTTTGAAAGGGGTCCTGCTCTTTGGGGACTGAAAG
1 GTGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGACTGAAAG
53128 GTGCCACCAACTTGTGTGGGCTTTGAAA
1 GTGCCACCAACTTGTGTGGGCTTTGAAA
53156 AGAAAAAGCA
Statistics
Matches: 177, Mismatches: 12, Indels: 8
0.90 0.06 0.04
Matches are distributed among these distances:
54 6 0.03
55 165 0.93
56 6 0.03
ACGTcount: A:0.21, C:0.21, G:0.31, T:0.27
Consensus pattern (55 bp):
GTGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGACTGAAAG
Found at i:53072 original size:26 final size:26
Alignment explanation
Indices: 53043--53130 Score: 81
Period size: 26 Copynumber: 3.3 Consensus size: 26
53033 GTGGGCTTTA
53043 AAAGGTGTCCTGCTCTTTGGGGACTG
1 AAAGGTGTCCTGCTCTTTGGGGACTG
** *
53069 AAAGGTG-CCACCAACTTGTGTGGG-CTTTG
1 AAAGGTGTCCTGC-TCTT-TG-GGGAC--TG
*
53098 AAAGGGGTCCTGCTCTTTGGGGACTG
1 AAAGGTGTCCTGCTCTTTGGGGACTG
53124 AAAGGTG
1 AAAGGTG
53131 CCACCAACTT
Statistics
Matches: 47, Mismatches: 8, Indels: 14
0.68 0.12 0.20
Matches are distributed among these distances:
25 3 0.06
26 18 0.38
27 6 0.13
28 6 0.13
29 11 0.23
30 3 0.06
ACGTcount: A:0.19, C:0.18, G:0.35, T:0.27
Consensus pattern (26 bp):
AAAGGTGTCCTGCTCTTTGGGGACTG
Found at i:53917 original size:55 final size:55
Alignment explanation
Indices: 53822--54137 Score: 404
Period size: 55 Copynumber: 5.7 Consensus size: 55
53812 ATAAAGTGTA
* * * * *
53822 TCCTGCTCATTGAGGAGTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* * *
53877 TCCTACTCTTTGAGGACTGAAAGGTGCCACCAACGTGTGTGGGCTTT-AAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAA-AGGCG
* * *
53932 TCCTGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTAAAAGGTG
1 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* *
53987 TCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGGG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* *
54042 TCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCA
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTG-AAAG-----GCG
54103 TCCTGCTCTTTGAGGACT-AAAGGTGCCACCAACTT
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTT
54138 CGTCCCCACA
Statistics
Matches: 233, Mismatches: 18, Indels: 15
0.88 0.07 0.06
Matches are distributed among these distances:
54 6 0.03
55 182 0.78
56 10 0.04
60 17 0.07
61 18 0.08
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (55 bp):
TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
Found at i:54009 original size:26 final size:26
Alignment explanation
Indices: 53980--54067 Score: 81
Period size: 26 Copynumber: 3.3 Consensus size: 26
53970 GTGGGCTTTA
53980 AAAGGTGTCCTGCTCTTTGGGGACTG
1 AAAGGTGTCCTGCTCTTTGGGGACTG
** *
54006 AAAGGTG-CCACCAACTTGTGTGGG-CTTTG
1 AAAGGTGTCCTGC-TCTT-TG-GGGAC--TG
*
54035 AAAGGGGTCCTGCTCTTTGGGGACTG
1 AAAGGTGTCCTGCTCTTTGGGGACTG
54061 AAAGGTG
1 AAAGGTG
54068 CCACCAACTT
Statistics
Matches: 47, Mismatches: 8, Indels: 14
0.68 0.12 0.20
Matches are distributed among these distances:
25 3 0.06
26 18 0.38
27 6 0.13
28 6 0.13
29 11 0.23
30 3 0.06
ACGTcount: A:0.19, C:0.18, G:0.35, T:0.27
Consensus pattern (26 bp):
AAAGGTGTCCTGCTCTTTGGGGACTG
Found at i:54930 original size:50 final size:48
Alignment explanation
Indices: 54784--54976 Score: 142
Period size: 50 Copynumber: 3.8 Consensus size: 48
54774 GTAGAAAGTG
* * *
54784 CACCAACTCGTGTGGGCTTTAAAGGCGTCCT-CCTTTTTGAGGACTGAAAGGTGC
1 CACCAACT--TGTGGGCTTTAAA-GTGTCCTGCC--TTTGGGGA-TGAAA-ATGC
* *
54838 CACCAACGTGTGTGGGCTTTAAGAG-GTGCTGCCTTTGAGGATGGAAAATG-
1 CACCAAC-T-TGTGGGCTTTAA-AGTGTCCTGCCTTTGGGGAT-GAAAATGC
**
54888 CACC-ACATTGGTGGGCTTTAAAGTGTCCTGCTCTTTGGGGATGAAGGTGC
1 CACCAAC-TT-GTGGGCTTTAAAGTGTCCTGC-CTTTGGGGATGAAAATGC
*
54938 CACCAACTTGTGTGGCTTTAAAGGTGGCCTGCCTTTGGG
1 CACCAACTTGTG-GGCTTTAAA-GTGTCCTGCCTTTGGG
54977 ACTGAAAGGT
Statistics
Matches: 120, Mismatches: 8, Indels: 26
0.78 0.05 0.17
Matches are distributed among these distances:
48 3 0.03
49 28 0.23
50 35 0.29
51 13 0.11
52 12 0.10
53 4 0.03
54 23 0.19
55 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.31, T:0.28
Consensus pattern (48 bp):
CACCAACTTGTGGGCTTTAAAGTGTCCTGCCTTTGGGGATGAAAATGC
Found at i:54997 original size:51 final size:50
Alignment explanation
Indices: 54901--55002 Score: 136
Period size: 51 Copynumber: 2.0 Consensus size: 50
54891 CACATTGGTG
* **
54901 GGCTTTAAAGTGTCCTGCTCTTTGGGGATGAAGGTGCCACCAACTTGTGT
1 GGCTTTAAAGTGGCCTGCTCTTTGGGGATGAAGGTGCCAAAAACTTGTGT
54951 GGCTTTAAAGGTGGCCTGC-CTTT-GGGACTGAAAGGTGCCAAAAACTTGTGT
1 GGCTTTAAA-GTGGCCTGCTCTTTGGGGA-TG-AAGGTGCCAAAAACTTGTGT
55002 G
1 G
55003 CCGCTGCTTG
Statistics
Matches: 46, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
49 4 0.09
50 15 0.33
51 27 0.59
ACGTcount: A:0.21, C:0.19, G:0.31, T:0.29
Consensus pattern (50 bp):
GGCTTTAAAGTGGCCTGCTCTTTGGGGATGAAGGTGCCAAAAACTTGTGT
Found at i:55782 original size:55 final size:54
Alignment explanation
Indices: 55690--55987 Score: 259
Period size: 55 Copynumber: 5.6 Consensus size: 54
55680 AAGTGTATCA
* * * *
55690 TGCTCATTGAGGAGTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCC
1 TGCTCTTTGAGGACTTAAAGGTGCCACCAACT-GTGTGGGCTTTGAAAGGCGTCC
* *
55745 TACTCTTTGAGGACTTAAAGGTGCCACCAACGTGTGTGGGCTTT-AAGAGGTGTCC
1 TGCTCTTTGAGGACTTAAAGGTGCCACCAAC-TGTGTGGGCTTTGAA-AGGCGTCC
* * * *
55800 TGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTAAAAGGTGT-C
1 TGCTCTTTGAGGACT-TAAAGGTGCCACCAAC-TGTGTGGGCTTTGAAAGGCGTCC
*
55854 TGCTCTTTG-GGAC-T-AAGGTG---CCAACT-TGT-GGC-TTG-AAGGGGTCC
1 TGCTCTTTGAGGACTTAAAGGTGCCACCAACTGTGTGGGCTTTGAAAGGCGTCC
* *
55898 TGCTC-TTG-GGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCC
1 TGCTCTTTGAGGACTTAAAGGTGCCACCAAC-TGTGTGGGCTTTG-AAAG-----GCGTCC
55957 TGCTCTTTGAGGAC-TAAAGGTGCCACCAACT
1 TGCTCTTTGAGGACTTAAAGGTGCCACCAACT
55988 TCGTCCCCAC
Statistics
Matches: 201, Mismatches: 18, Indels: 44
0.76 0.07 0.17
Matches are distributed among these distances:
43 13 0.06
44 8 0.04
45 9 0.04
46 3 0.01
47 1 0.00
48 10 0.05
49 1 0.00
50 5 0.02
51 5 0.02
52 3 0.01
53 4 0.02
54 15 0.07
55 86 0.43
56 6 0.03
59 10 0.05
60 18 0.09
61 4 0.02
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.27
Consensus pattern (54 bp):
TGCTCTTTGAGGACTTAAAGGTGCCACCAACTGTGTGGGCTTTGAAAGGCGTCC
Found at i:56693 original size:55 final size:55
Alignment explanation
Indices: 56609--56924 Score: 406
Period size: 55 Copynumber: 5.7 Consensus size: 55
56599 ATAAAGTGTA
* * * * *
56609 TCCTGCTCATTGAGGAGTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* *
56664 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACGTGTGTGGGCTTT-AAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAA-AGGCG
* * *
56719 TCCTGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTAAAAGGTG
1 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* *
56774 TCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGGG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
*
56829 TCCTGCTCTTT-AGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCA
1 TCCTGCTCTTTGA-GGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTG-AAAG-----GCG
56890 TCCTGCTCTTTGAGGACT-AAAGGTGCCACCAACTT
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTT
56925 CGTCCCCACA
Statistics
Matches: 233, Mismatches: 16, Indels: 19
0.87 0.06 0.07
Matches are distributed among these distances:
54 6 0.03
55 182 0.78
56 10 0.04
60 17 0.07
61 17 0.07
62 1 0.00
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (55 bp):
TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
Found at i:56796 original size:26 final size:26
Alignment explanation
Indices: 56767--56854 Score: 72
Period size: 26 Copynumber: 3.3 Consensus size: 26
56757 GTGGGCTTTA
56767 AAAGGTGTCCTGCTCTTTGGGGACTG
1 AAAGGTGTCCTGCTCTTTGGGGACTG
** *
56793 AAAGGTG-CCACCAACTTGTGTGGG-CTTTG
1 AAAGGTGTCCTGC-TCTT-TG-GGGAC--TG
* *
56822 AAAGGGGTCCTGCTCTTTAGGGACTG
1 AAAGGTGTCCTGCTCTTTGGGGACTG
56848 AAAGGTG
1 AAAGGTG
56855 CCACCAACTT
Statistics
Matches: 46, Mismatches: 9, Indels: 14
0.67 0.13 0.20
Matches are distributed among these distances:
25 3 0.07
26 18 0.39
27 6 0.13
28 5 0.11
29 11 0.24
30 3 0.07
ACGTcount: A:0.20, C:0.18, G:0.34, T:0.27
Consensus pattern (26 bp):
AAAGGTGTCCTGCTCTTTGGGGACTG
Found at i:57641 original size:55 final size:55
Alignment explanation
Indices: 57546--57861 Score: 397
Period size: 55 Copynumber: 5.7 Consensus size: 55
57536 ATAAAGTGTA
* * * * *
57546 TCCTGCTCATTGAGGAGTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* *
57601 TCCTCCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAA-AGGCG
* * *
57656 TCCTGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTAAAAGGTG
1 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* *
57711 TCCTGCTCTTTGGGGATTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGG-G
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTG-AAAGGCG
* *
57766 TCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCA
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTG-AAAG-----GCG
57827 TCCTGCTCTTTGAGGACT-AAAGGTGCCACCAACTT
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTT
57862 CGTCCCCACA
Statistics
Matches: 234, Mismatches: 16, Indels: 17
0.88 0.06 0.06
Matches are distributed among these distances:
54 6 0.03
55 182 0.78
56 11 0.05
60 18 0.08
61 17 0.07
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.27
Consensus pattern (55 bp):
TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
Found at i:57733 original size:26 final size:26
Alignment explanation
Indices: 57704--57791 Score: 72
Period size: 26 Copynumber: 3.3 Consensus size: 26
57694 GTGGGCTTTA
57704 AAAGGTGTCCTGCTCTTTGGGGATTG
1 AAAGGTGTCCTGCTCTTTGGGGATTG
** * *
57730 AAAGGTG-CCACCAACTTGTGTGGGCTTTG
1 AAAGGTGTCCTGC-TCTT-TG-GGG-ATTG
*
57759 AAAAGG-GTCCTGCTCTTTGGGGACTG
1 -AAAGGTGTCCTGCTCTTTGGGGATTG
57785 AAAGGTG
1 AAAGGTG
57792 CCACCAACTT
Statistics
Matches: 46, Mismatches: 9, Indels: 14
0.67 0.13 0.20
Matches are distributed among these distances:
25 8 0.17
26 13 0.28
27 5 0.11
28 5 0.11
29 7 0.15
30 8 0.17
ACGTcount: A:0.20, C:0.17, G:0.34, T:0.28
Consensus pattern (26 bp):
AAAGGTGTCCTGCTCTTTGGGGATTG
Found at i:58578 original size:55 final size:55
Alignment explanation
Indices: 58483--58798 Score: 397
Period size: 55 Copynumber: 5.7 Consensus size: 55
58473 ATAAAGTGTA
* * * * *
58483 TCCTGCTCATTGAGGAGTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* *
58538 TCCTCCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAA-AGGCG
* * *
58593 TCCTGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTAAAAGGTG
1 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* *
58648 TCCTGCTCTTTGGGGATTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGG-G
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTG-AAAGGCG
* *
58703 TCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCA
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTG-AAAG-----GCG
58764 TCCTGCTCTTTGAGGACT-AAAGGTGCCACCAACTT
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTT
58799 CGTCCCCACA
Statistics
Matches: 234, Mismatches: 16, Indels: 17
0.88 0.06 0.06
Matches are distributed among these distances:
54 6 0.03
55 182 0.78
56 11 0.05
60 18 0.08
61 17 0.07
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.27
Consensus pattern (55 bp):
TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
Found at i:58670 original size:26 final size:26
Alignment explanation
Indices: 58641--58728 Score: 72
Period size: 26 Copynumber: 3.3 Consensus size: 26
58631 GTGGGCTTTA
58641 AAAGGTGTCCTGCTCTTTGGGGATTG
1 AAAGGTGTCCTGCTCTTTGGGGATTG
** * *
58667 AAAGGTG-CCACCAACTTGTGTGGGCTTTG
1 AAAGGTGTCCTGC-TCTT-TG-GGG-ATTG
*
58696 AAAAGG-GTCCTGCTCTTTGGGGACTG
1 -AAAGGTGTCCTGCTCTTTGGGGATTG
58722 AAAGGTG
1 AAAGGTG
58729 CCACCAACTT
Statistics
Matches: 46, Mismatches: 9, Indels: 14
0.67 0.13 0.20
Matches are distributed among these distances:
25 8 0.17
26 13 0.28
27 5 0.11
28 5 0.11
29 7 0.15
30 8 0.17
ACGTcount: A:0.20, C:0.17, G:0.34, T:0.28
Consensus pattern (26 bp):
AAAGGTGTCCTGCTCTTTGGGGATTG
Found at i:59516 original size:55 final size:55
Alignment explanation
Indices: 59420--59729 Score: 405
Period size: 55 Copynumber: 5.7 Consensus size: 55
59410 ATAAAGTGTA
* * * ** * *
59420 TCCTGCTCATTGAGGAGTAAAAAGTGCCACCAACTCATGTGGGCTTTGAAAGGCG
1 TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGTG
* *
59475 TCC-GACTCTTTGAGGACTTAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
1 TCCTG-CTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGTG
59530 TCCTGCTCTTTGAGGACTGGAAAA--TGCCACCAACTTGTGTGGGCTTTAAAAGGTG
1 TCCTGCTCTTTGAGGACT--AAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGTG
* * *
59585 TCCTGCTCTTTGGGGAC-AGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGGG
1 TCCTGCTCTTTGAGGACTA-AAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGTG
*
59640 TCCTGCTCTTTGGGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGTG
1 TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGTG
* * *
59695 TCCTGCTCTTTGGGGACT-AAAGGTGTCACCCACTT
1 TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTT
59730 CGTCCCCACA
Statistics
Matches: 229, Mismatches: 18, Indels: 17
0.87 0.07 0.06
Matches are distributed among these distances:
52 1 0.00
53 3 0.01
54 16 0.07
55 204 0.89
56 2 0.01
57 3 0.01
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (55 bp):
TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGTG
Found at i:60446 original size:55 final size:55
Alignment explanation
Indices: 60351--60666 Score: 395
Period size: 55 Copynumber: 5.7 Consensus size: 55
60341 ATAAAGTGTA
* * * * *
60351 TCCTGCTCATTGAGGAGTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* * *
60406 TCCTACTCTTTGAGGACTGAAAGGTGCCACCAACGTGTGTGGGCTTT-AAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAA-AGGCG
* * * *
60461 TCCTGTTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTAAAAGGTG
1 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* *
60516 TCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGGG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* *
60571 TCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCA
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTG-AAAG-----GCG
60632 TCCTGCTCTTTGAGGACT-AAAGGTGCCACCAACTT
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTT
60667 CGTCCCCACA
Statistics
Matches: 231, Mismatches: 20, Indels: 15
0.87 0.08 0.06
Matches are distributed among these distances:
54 6 0.03
55 180 0.78
56 10 0.04
60 17 0.07
61 18 0.08
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (55 bp):
TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
Found at i:60538 original size:26 final size:26
Alignment explanation
Indices: 60509--60596 Score: 81
Period size: 26 Copynumber: 3.3 Consensus size: 26
60499 GTGGGCTTTA
60509 AAAGGTGTCCTGCTCTTTGGGGACTG
1 AAAGGTGTCCTGCTCTTTGGGGACTG
** *
60535 AAAGGTG-CCACCAACTTGTGTGGG-CTTTG
1 AAAGGTGTCCTGC-TCTT-TG-GGGAC--TG
*
60564 AAAGGGGTCCTGCTCTTTGGGGACTG
1 AAAGGTGTCCTGCTCTTTGGGGACTG
60590 AAAGGTG
1 AAAGGTG
60597 CCACCAACTT
Statistics
Matches: 47, Mismatches: 8, Indels: 14
0.68 0.12 0.20
Matches are distributed among these distances:
25 3 0.06
26 18 0.38
27 6 0.13
28 6 0.13
29 11 0.23
30 3 0.06
ACGTcount: A:0.19, C:0.18, G:0.35, T:0.27
Consensus pattern (26 bp):
AAAGGTGTCCTGCTCTTTGGGGACTG
Found at i:61372 original size:55 final size:55
Alignment explanation
Indices: 61288--61603 Score: 438
Period size: 55 Copynumber: 5.7 Consensus size: 55
61278 ATAAAGTGTA
* * * * *
61288 TCCTGCTCATTGAGGAGTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
*
61343 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
* *
61398 TCCTGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTAAAAGGTG
1 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
* *
61453 TCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGGG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
* **
61508 TCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCA
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTG-AAAG-----GTG
61569 TCCTGCTCTTTGAGGACT-AAAGGTGCCACCAACTT
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTT
61604 CGTCCCCACA
Statistics
Matches: 239, Mismatches: 14, Indels: 11
0.91 0.05 0.04
Matches are distributed among these distances:
54 4 0.02
55 192 0.80
56 8 0.03
60 17 0.07
61 18 0.08
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.27
Consensus pattern (55 bp):
TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
Found at i:61475 original size:26 final size:26
Alignment explanation
Indices: 61446--61533 Score: 81
Period size: 26 Copynumber: 3.3 Consensus size: 26
61436 GTGGGCTTTA
61446 AAAGGTGTCCTGCTCTTTGGGGACTG
1 AAAGGTGTCCTGCTCTTTGGGGACTG
** *
61472 AAAGGTG-CCACCAACTTGTGTGGG-CTTTG
1 AAAGGTGTCCTGC-TCTT-TG-GGGAC--TG
*
61501 AAAGGGGTCCTGCTCTTTGGGGACTG
1 AAAGGTGTCCTGCTCTTTGGGGACTG
61527 AAAGGTG
1 AAAGGTG
61534 CCACCAACTT
Statistics
Matches: 47, Mismatches: 8, Indels: 14
0.68 0.12 0.20
Matches are distributed among these distances:
25 3 0.06
26 18 0.38
27 6 0.13
28 6 0.13
29 11 0.23
30 3 0.06
ACGTcount: A:0.19, C:0.18, G:0.35, T:0.27
Consensus pattern (26 bp):
AAAGGTGTCCTGCTCTTTGGGGACTG
Found at i:62320 original size:55 final size:55
Alignment explanation
Indices: 62225--62540 Score: 404
Period size: 55 Copynumber: 5.7 Consensus size: 55
62215 ATAAAGTGTA
* * * * *
62225 TCCTGCTCATTGAGGAGTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* * *
62280 TCCTACTCTTTGAGGACTGAAAGGTGCCACCAACGTGTGTGGGCTTT-AAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAA-AGGCG
* * *
62335 TCCTGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTAAAAGGTG
1 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* *
62390 TCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGGG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* *
62445 TCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCA
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTG-AAAG-----GCG
62506 TCCTGCTCTTTGAGGACT-AAAGGTGCCACCAACTT
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTT
62541 CGTCCCCACA
Statistics
Matches: 233, Mismatches: 18, Indels: 15
0.88 0.07 0.06
Matches are distributed among these distances:
54 6 0.03
55 182 0.78
56 10 0.04
60 17 0.07
61 18 0.08
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (55 bp):
TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
Found at i:62412 original size:26 final size:26
Alignment explanation
Indices: 62383--62470 Score: 81
Period size: 26 Copynumber: 3.3 Consensus size: 26
62373 GTGGGCTTTA
62383 AAAGGTGTCCTGCTCTTTGGGGACTG
1 AAAGGTGTCCTGCTCTTTGGGGACTG
** *
62409 AAAGGTG-CCACCAACTTGTGTGGG-CTTTG
1 AAAGGTGTCCTGC-TCTT-TG-GGGAC--TG
*
62438 AAAGGGGTCCTGCTCTTTGGGGACTG
1 AAAGGTGTCCTGCTCTTTGGGGACTG
62464 AAAGGTG
1 AAAGGTG
62471 CCACCAACTT
Statistics
Matches: 47, Mismatches: 8, Indels: 14
0.68 0.12 0.20
Matches are distributed among these distances:
25 3 0.06
26 18 0.38
27 6 0.13
28 6 0.13
29 11 0.23
30 3 0.06
ACGTcount: A:0.19, C:0.18, G:0.35, T:0.27
Consensus pattern (26 bp):
AAAGGTGTCCTGCTCTTTGGGGACTG
Found at i:63286 original size:55 final size:56
Alignment explanation
Indices: 63163--63477 Score: 376
Period size: 55 Copynumber: 5.6 Consensus size: 56
63153 ATAATGTGTA
* * * * *
63163 TCCTGCTCATTGAGGAGTAAAAAGTGCCACCAACTCGTG-GGGCTTTGAA-AGGCG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAGAGGCG
* *
63217 TCCTGCTCCTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAGAGGCG
* * *
63272 TCCTACTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTT--AGAAGGTG
1 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAG-AGGCG
* *
63327 TCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAA-AGGGG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAGAGGCG
* * *
63382 TCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCA
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTG--AAG---AGGCG
63443 TCCTGCTCTTTGAGGACT-AAAGGTGCCACCAACTT
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTT
63478 CGTCCCCACA
Statistics
Matches: 231, Mismatches: 17, Indels: 20
0.86 0.06 0.07
Matches are distributed among these distances:
54 42 0.18
55 146 0.63
56 4 0.02
57 3 0.01
60 17 0.07
61 19 0.08
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (56 bp):
TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAGAGGCG
Found at i:63350 original size:26 final size:26
Alignment explanation
Indices: 63321--63407 Score: 79
Period size: 26 Copynumber: 3.2 Consensus size: 26
63311 TGGGCTTTAG
63321 AAGGTGTCCTGCTCTTTGGGGACTGA
1 AAGGTGTCCTGCTCTTTGGGGACTGA
** *
63347 AAGGTG-CCACCAACTTGTGTGGG-CTTTGA
1 AAGGTGTCCTGC-TCTT-TG-GGGAC--TGA
*
63376 AAGGGGTCCTGCTCTTTGGGGACTGA
1 AAGGTGTCCTGCTCTTTGGGGACTGA
63402 AAGGTG
1 AAGGTG
63408 CCACCAACTT
Statistics
Matches: 46, Mismatches: 8, Indels: 14
0.68 0.12 0.21
Matches are distributed among these distances:
25 3 0.07
26 17 0.37
27 6 0.13
28 6 0.13
29 11 0.24
30 3 0.07
ACGTcount: A:0.18, C:0.18, G:0.36, T:0.28
Consensus pattern (26 bp):
AAGGTGTCCTGCTCTTTGGGGACTGA
Found at i:72156 original size:20 final size:20
Alignment explanation
Indices: 72131--72172 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
72121 AACCAAAACC
72131 AATGCCCCTTGTTGAACACT
1 AATGCCCCTTGTTGAACACT
72151 AATGCCCCTTGTTGAACACT
1 AATGCCCCTTGTTGAACACT
72171 AA
1 AA
72173 ACCAAAACCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.29, C:0.29, G:0.14, T:0.29
Consensus pattern (20 bp):
AATGCCCCTTGTTGAACACT
Found at i:76531 original size:10 final size:10
Alignment explanation
Indices: 76516--76546 Score: 62
Period size: 10 Copynumber: 3.1 Consensus size: 10
76506 TAAAAATGAG
76516 ACTTTTCCAT
1 ACTTTTCCAT
76526 ACTTTTCCAT
1 ACTTTTCCAT
76536 ACTTTTCCAT
1 ACTTTTCCAT
76546 A
1 A
76547 AATTGAAGTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.23, C:0.29, G:0.00, T:0.48
Consensus pattern (10 bp):
ACTTTTCCAT
Found at i:77635 original size:20 final size:20
Alignment explanation
Indices: 77584--77638 Score: 56
Period size: 20 Copynumber: 2.8 Consensus size: 20
77574 AAAAACTCAC
*
77584 AATGTATTGATACATGAAGG
1 AATGTATTGATACATGAAGA
* * * **
77604 ATTGCATCGATACATGGTGA
1 AATGTATTGATACATGAAGA
77624 AATGTATTGATACAT
1 AATGTATTGATACAT
77639 TAAGCCCAAC
Statistics
Matches: 26, Mismatches: 9, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.36, C:0.09, G:0.22, T:0.33
Consensus pattern (20 bp):
AATGTATTGATACATGAAGA
Found at i:80223 original size:16 final size:16
Alignment explanation
Indices: 80202--80233 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
80192 CTAGAACTCC
*
80202 TCAGACGTTGGAAGAA
1 TCAGACGTTAGAAGAA
80218 TCAGACGTTAGAAGAA
1 TCAGACGTTAGAAGAA
80234 ATAGCTAGGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.41, C:0.12, G:0.28, T:0.19
Consensus pattern (16 bp):
TCAGACGTTAGAAGAA
Found at i:85842 original size:13 final size:13
Alignment explanation
Indices: 85824--85849 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
85814 AATTTTTTGG
85824 TGTATCGATACAT
1 TGTATCGATACAT
85837 TGTATCGATACAT
1 TGTATCGATACAT
85850 ATTTGGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:85860 original size:32 final size:34
Alignment explanation
Indices: 85803--85867 Score: 107
Period size: 32 Copynumber: 2.0 Consensus size: 34
85793 TACAAGCCAA
*
85803 TGTATCGATACAATTTTTTGGTGTATCGATACAT
1 TGTATCGATACAATTATTTGGTGTATCGATACAT
85837 TGTATCGATAC-A-TATTTGGTGTATCGATACA
1 TGTATCGATACAATTATTTGGTGTATCGATACA
85868 AGTTTGGCTA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
32 18 0.60
33 1 0.03
34 11 0.37
ACGTcount: A:0.28, C:0.12, G:0.18, T:0.42
Consensus pattern (34 bp):
TGTATCGATACAATTATTTGGTGTATCGATACAT
Found at i:86523 original size:25 final size:25
Alignment explanation
Indices: 86489--86546 Score: 98
Period size: 25 Copynumber: 2.3 Consensus size: 25
86479 CAAAATAATT
* *
86489 TTAACAAGTTCGTACATTCTCTCCC
1 TTAATAAGTTCGTACATTCTCCCCC
86514 TTAATAAGTTCGTACATTCTCCCCC
1 TTAATAAGTTCGTACATTCTCCCCC
86539 TTAATAAG
1 TTAATAAG
86547 GTAATTTTAG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.28, C:0.28, G:0.09, T:0.36
Consensus pattern (25 bp):
TTAATAAGTTCGTACATTCTCCCCC
Found at i:88987 original size:15 final size:15
Alignment explanation
Indices: 88967--88997 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
88957 ATTTCGTTTG
*
88967 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
88982 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
88997 G
1 G
88998 GACATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Found at i:90831 original size:21 final size:21
Alignment explanation
Indices: 90802--90846 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
90792 AAGTTTTCAT
*
90802 TTTTCTTAGCTAAC-TCATTA
1 TTTTCTTAGCCAACTTCATTA
*
90822 TTTTCATTAGCCAACTTCTTTA
1 TTTTC-TTAGCCAACTTCATTA
90844 TTT
1 TTT
90847 CAACTTGCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 8 0.38
22 8 0.38
ACGTcount: A:0.22, C:0.20, G:0.04, T:0.53
Consensus pattern (21 bp):
TTTTCTTAGCCAACTTCATTA
Found at i:91334 original size:16 final size:17
Alignment explanation
Indices: 91313--91345 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
91303 AGCATATTAC
*
91313 TTGCTC-TTTGTCCTTT
1 TTGCTCGTTTCTCCTTT
91329 TTGCTCGTTTCTCCTTT
1 TTGCTCGTTTCTCCTTT
91346 GAGCAAAGAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.00, C:0.27, G:0.12, T:0.61
Consensus pattern (17 bp):
TTGCTCGTTTCTCCTTT
Found at i:93067 original size:21 final size:20
Alignment explanation
Indices: 93042--93094 Score: 81
Period size: 19 Copynumber: 2.6 Consensus size: 20
93032 TACAAGCCAA
*
93042 TGTATCGATACAATTTTTTGG
1 TGTATCGATACAA-TATTTGG
93063 TGTATCGATAC-ATATTTGG
1 TGTATCGATACAATATTTGG
93082 TGTATCGATACAA
1 TGTATCGATACAA
93095 GTTTGGCTAC
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
19 17 0.57
20 2 0.07
21 11 0.37
ACGTcount: A:0.28, C:0.11, G:0.19, T:0.42
Consensus pattern (20 bp):
TGTATCGATACAATATTTGG
Found at i:93099 original size:19 final size:18
Alignment explanation
Indices: 93042--93100 Score: 73
Period size: 19 Copynumber: 3.0 Consensus size: 18
93032 TACAAGCCAA
93042 TGTATCGATACAATTTTTTGG
1 TGTATCGATACAA---TTTGG
93063 TGTATCGATACATATTTGG
1 TGTATCGATACA-ATTTGG
93082 TGTATCGATACAAGTTTGG
1 TGTATCGATACAA-TTTGG
93101 CTACTGCCAA
Statistics
Matches: 36, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
18 1 0.03
19 22 0.61
21 12 0.33
22 1 0.03
ACGTcount: A:0.25, C:0.10, G:0.22, T:0.42
Consensus pattern (18 bp):
TGTATCGATACAATTTGG
Found at i:93847 original size:13 final size:13
Alignment explanation
Indices: 93825--93854 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
93815 GCTAAAACTC
93825 ACATTATATCGAT
1 ACATTATATCGAT
*
93838 ACATTGTATCGAT
1 ACATTATATCGAT
93851 ACAT
1 ACAT
93855 GAAGGATTGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.37, C:0.17, G:0.10, T:0.37
Consensus pattern (13 bp):
ACATTATATCGAT
Found at i:93865 original size:20 final size:20
Alignment explanation
Indices: 93840--93894 Score: 74
Period size: 20 Copynumber: 2.8 Consensus size: 20
93830 ATATCGATAC
*
93840 ATTGTATCGATACATGAAGG
1 ATTGTATCGATACATGAAGA
**
93860 ATTGTATCGATACATGGTGA
1 ATTGTATCGATACATGAAGA
*
93880 AATGTATCGATACAT
1 ATTGTATCGATACAT
93895 TGAGCCTAAC
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.35, C:0.11, G:0.22, T:0.33
Consensus pattern (20 bp):
ATTGTATCGATACATGAAGA
Found at i:94259 original size:20 final size:19
Alignment explanation
Indices: 94236--94307 Score: 67
Period size: 20 Copynumber: 3.7 Consensus size: 19
94226 CACACCCAGA
94236 TGTATCGATACATTATGCTT
1 TGTATCGATACATTAT-CTT
* *
94256 TGTATTGATACATGT-TCAT
1 TGTATCGATACAT-TATCTT
*
94275 TGTATCGATACATTGATAATT
1 TGTATCGATACATT-AT-CTT
94296 T-TATCGATACAT
1 TGTATCGATACAT
94308 GAAATTCGCA
Statistics
Matches: 43, Mismatches: 5, Indels: 8
0.77 0.09 0.14
Matches are distributed among these distances:
18 1 0.02
19 14 0.33
20 25 0.58
21 3 0.07
ACGTcount: A:0.29, C:0.12, G:0.14, T:0.44
Consensus pattern (19 bp):
TGTATCGATACATTATCTT
Found at i:100506 original size:13 final size:13
Alignment explanation
Indices: 100488--100514 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
100478 ACAATATTCC
100488 TTATATCGATACA
1 TTATATCGATACA
100501 TTATATCGATACA
1 TTATATCGATACA
100514 T
1 T
100515 GGATTACTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.37, C:0.15, G:0.07, T:0.41
Consensus pattern (13 bp):
TTATATCGATACA
Found at i:100661 original size:22 final size:22
Alignment explanation
Indices: 100636--100693 Score: 75
Period size: 21 Copynumber: 2.7 Consensus size: 22
100626 AATCTTTTAC
*
100636 AAATTTCCTCATTTTTGCTTCA
1 AAATTACCTCATTTTTGCTTCA
*
100658 AAA-TACTTCATTTTTGCTTCA
1 AAATTACCTCATTTTTGCTTCA
*
100679 AAA-TACTTCATTTTT
1 AAATTACCTCATTTTT
100694 CATCAAATTC
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
21 31 0.91
22 3 0.09
ACGTcount: A:0.28, C:0.19, G:0.03, T:0.50
Consensus pattern (22 bp):
AAATTACCTCATTTTTGCTTCA
Found at i:100700 original size:20 final size:21
Alignment explanation
Indices: 100644--100693 Score: 100
Period size: 21 Copynumber: 2.4 Consensus size: 21
100634 ACAAATTTCC
100644 TCATTTTTGCTTCAAAATACT
1 TCATTTTTGCTTCAAAATACT
100665 TCATTTTTGCTTCAAAATACT
1 TCATTTTTGCTTCAAAATACT
100686 TCATTTTT
1 TCATTTTT
100694 CATCAAATTC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.26, C:0.18, G:0.04, T:0.52
Consensus pattern (21 bp):
TCATTTTTGCTTCAAAATACT
Found at i:102460 original size:24 final size:24
Alignment explanation
Indices: 102428--102501 Score: 123
Period size: 24 Copynumber: 3.1 Consensus size: 24
102418 GAAAATAAAT
*
102428 TTTTTTCTAGGGGGAGAAAATCTC
1 TTTTATCTAGGGGGAGAAAATCTC
102452 TTTTATCTA-GGGGAGAAAATCTC
1 TTTTATCTAGGGGGAGAAAATCTC
*
102475 TTTTATCTAGGGGAAGAAAATCTC
1 TTTTATCTAGGGGGAGAAAATCTC
102499 TTT
1 TTT
102502 AACCGATTAT
Statistics
Matches: 47, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
23 23 0.49
24 24 0.51
ACGTcount: A:0.28, C:0.12, G:0.22, T:0.38
Consensus pattern (24 bp):
TTTTATCTAGGGGGAGAAAATCTC
Found at i:102502 original size:23 final size:23
Alignment explanation
Indices: 102428--102501 Score: 121
Period size: 23 Copynumber: 3.1 Consensus size: 23
102418 GAAAATAAAT
*
102428 TTTTTTCTAGGGGGAGAAAATCTC
1 TTTTATCTA-GGGGAGAAAATCTC
102452 TTTTATCTAGGGGAGAAAATCTC
1 TTTTATCTAGGGGAGAAAATCTC
102475 TTTTATCTAGGGGAAGAAAATCTC
1 TTTTATCTAGGGG-AGAAAATCTC
102499 TTT
1 TTT
102502 AACCGATTAT
Statistics
Matches: 48, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
23 27 0.56
24 21 0.44
ACGTcount: A:0.28, C:0.12, G:0.22, T:0.38
Consensus pattern (23 bp):
TTTTATCTAGGGGAGAAAATCTC
Found at i:103130 original size:13 final size:13
Alignment explanation
Indices: 103109--103156 Score: 51
Period size: 13 Copynumber: 3.5 Consensus size: 13
103099 TCGATACATT
* *
103109 ATACTTTGTATTG
1 ATACATTGTATCG
103122 ATACATTGTATCG
1 ATACATTGTATCG
103135 ATACTTCATTGTATCG
1 ATA---CATTGTATCG
103151 ATACAT
1 ATACAT
103157 GGACAATTGT
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
13 17 0.57
16 13 0.43
ACGTcount: A:0.29, C:0.15, G:0.12, T:0.44
Consensus pattern (13 bp):
ATACATTGTATCG
Found at i:103231 original size:20 final size:20
Alignment explanation
Indices: 103206--103259 Score: 74
Period size: 20 Copynumber: 2.7 Consensus size: 20
103196 CTACTACTAT
103206 TTGTATCGATACATGAT-ACA
1 TTGTATCGATACATGATGA-A
*
103226 TTGTATCGATGCATGATGAA
1 TTGTATCGATACATGATGAA
*
103246 TTGTATCAATACAT
1 TTGTATCGATACAT
103260 TTCTTCCAAC
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
20 29 0.97
21 1 0.03
ACGTcount: A:0.33, C:0.13, G:0.17, T:0.37
Consensus pattern (20 bp):
TTGTATCGATACATGATGAA
Found at i:106751 original size:31 final size:31
Alignment explanation
Indices: 106713--106778 Score: 114
Period size: 31 Copynumber: 2.1 Consensus size: 31
106703 TGCATGCAAG
*
106713 GCAATGTAGCATGCAATCATGGGAGACACAT
1 GCAATGTAGCATGCAATCATGGGAGACACAA
*
106744 GCAATGTAGCATGCAATCATGGGGGACACAA
1 GCAATGTAGCATGCAATCATGGGAGACACAA
106775 GCAA
1 GCAA
106779 ATGGAAAGAA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.36, C:0.20, G:0.27, T:0.17
Consensus pattern (31 bp):
GCAATGTAGCATGCAATCATGGGAGACACAA
Found at i:107351 original size:31 final size:31
Alignment explanation
Indices: 107316--107408 Score: 134
Period size: 31 Copynumber: 3.0 Consensus size: 31
107306 GCACCCGAAA
*
107316 CCAGCAGCTCGAGCTTCTTCAAGCTTCCACG
1 CCAGCAGCTCGAGCCTCTTCAAGCTTCCACG
* *
107347 CCAGCAGCTCAAGCCTCTTCTAGCTTCCACG
1 CCAGCAGCTCGAGCCTCTTCAAGCTTCCACG
*
107378 GCAGCAGCTCGAGCCTCTTTCAA-CTTCCACG
1 CCAGCAGCTCGAGCCTC-TTCAAGCTTCCACG
107409 AACACAAGCA
Statistics
Matches: 55, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
31 51 0.93
32 4 0.07
ACGTcount: A:0.19, C:0.40, G:0.18, T:0.23
Consensus pattern (31 bp):
CCAGCAGCTCGAGCCTCTTCAAGCTTCCACG
Found at i:108376 original size:13 final size:13
Alignment explanation
Indices: 108354--108396 Score: 54
Period size: 13 Copynumber: 3.4 Consensus size: 13
108344 GTAAAATTTT
108354 AAAAAT-ATAATA
1 AAAAATAATAATA
*
108366 AAAAATAATAACA
1 AAAAATAATAATA
108379 AAATAA-AATAATA
1 AAA-AATAATAATA
108392 AAAAA
1 AAAAA
108397 ATTCTTTTCT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
12 8 0.30
13 17 0.63
14 2 0.07
ACGTcount: A:0.79, C:0.02, G:0.00, T:0.19
Consensus pattern (13 bp):
AAAAATAATAATA
Found at i:108388 original size:16 final size:16
Alignment explanation
Indices: 108367--108398 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
108357 AATATAATAA
*
108367 AAAATAATAACAAAAT
1 AAAATAATAAAAAAAT
108383 AAAATAATAAAAAAAT
1 AAAATAATAAAAAAAT
108399 TCTTTTCTTC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.78, C:0.03, G:0.00, T:0.19
Consensus pattern (16 bp):
AAAATAATAAAAAAAT
Found at i:112905 original size:22 final size:23
Alignment explanation
Indices: 112861--112905 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 23
112851 ATATTCATGG
*
112861 CATTCATTCAACATTTTCATAAT
1 CATTCATTCAACATTTGCATAAT
* *
112884 CATTCA-TCAATATTTGCTTAAT
1 CATTCATTCAACATTTGCATAAT
112906 TACTAAGAAT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 13 0.68
23 6 0.32
ACGTcount: A:0.33, C:0.20, G:0.02, T:0.44
Consensus pattern (23 bp):
CATTCATTCAACATTTGCATAAT
Found at i:121117 original size:42 final size:42
Alignment explanation
Indices: 121067--121983 Score: 998
Period size: 42 Copynumber: 22.0 Consensus size: 42
121057 TAAACTTCTA
**
121067 GAGACTTTCCTTCCCTTAGTCTGCCTGTCAACTTTGACCCTG
1 GAGACTTTCCTTCCCTTAGTCTGCCTGTCGGCTTTGACCCTG
* * * * * * *
121109 GAAACTTTCTTTCCCTTAATCTACTTGTCAGTTTTGACCCTG
1 GAGACTTTCCTTCCCTTAGTCTGCCTGTCGGCTTTGACCCTG
* * *
121151 AAGACTTTCATTCCCTTAGTCTG-CTGTCGACTTTGACCCTG
1 GAGACTTTCCTTCCCTTAGTCTGCCTGTCGGCTTTGACCCTG
* *
121192 GAGACTTTCCTACCCTTAGTCTGCCTGTCGGCTTTGACCTTG
1 GAGACTTTCCTTCCCTTAGTCTGCCTGTCGGCTTTGACCCTG
*
121234 GAGACTTTCCTTCCCTTAGTCTGCCTGTCGGCTTTGACCCTA
1 GAGACTTTCCTTCCCTTAGTCTGCCTGTCGGCTTTGACCCTG
*
121276 GAGACTTTCCTTCCCTTAGTCTGCCTGTCGGCTTTGACCTTG
1 GAGACTTTCCTTCCCTTAGTCTGCCTGTCGGCTTTGACCCTG
121318 GAGACTTTCCTTCCCTTAGTCTGCCTGTCGGCTTTGACCCTG
1 GAGACTTTCCTTCCCTTAGTCTGCCTGTCGGCTTTGACCCTG
* * * * *
121360 GAGACTTTCCTTCCCTTAGTCTTCTTATCGGCTTTGATCCTA
1 GAGACTTTCCTTCCCTTAGTCTGCCTGTCGGCTTTGACCCTG
* *
121402 GAGACTTTTCTACCCTTAGTCTGCCTGTCGGCTTTGA-CCTG
1 GAGACTTTCCTTCCCTTAGTCTGCCTGTCGGCTTTGACCCTG
* * *
121443 GAGACTTTACTTCCCTTAGTTTGCCTGTCGG---TGACCCTA
1 GAGACTTTCCTTCCCTTAGTCTGCCTGTCGGCTTTGACCCTG
* *
121482 GAGACTTTCCTTCCCTTAGTCTACCTGTCGGCTTTGACTCTG
1 GAGACTTTCCTTCCCTTAGTCTGCCTGTCGGCTTTGACCCTG
* * * *
121524 AAGACTTT-CTCACCCTTAGTCTGCCTATCGGCTTTGACCCTA
1 GAGACTTTCCT-TCCCTTAGTCTGCCTGTCGGCTTTGACCCTG
* * *
121566 GAGACTTTCCTTCCCTTAGTCT-CCTTGTCGACTTTGACCTTT
1 GAGACTTTCCTTCCCTTAGTCTGCC-TGTCGGCTTTGACCCTG
* * * * *
121608 GAGACTTT-CTTACTCTCAGTCTGCCTATCAGCTTTGACCCTA
1 GAGACTTTCCTT-CCCTTAGTCTGCCTGTCGGCTTTGACCCTG
* * * *
121650 GAGACTTTTCTACCCTCAGTTTGCCTGTCGGCTTTGACCCTG
1 GAGACTTTCCTTCCCTTAGTCTGCCTGTCGGCTTTGACCCTG
* *
121692 GAGACTTTTCTAT-CCTTAGTCTGCCTGTCGGCTTTGACTCTG
1 GAGACTTTCCT-TCCCTTAGTCTGCCTGTCGGCTTTGACCCTG
* * *
121734 AAGACTTTTCTTCCCTTAGTCTGCCTGTCGGCTTTGACCTTTG
1 GAGACTTTCCTTCCCTTAGTCTGCCTGTCGGCTTTGACC-CTG
* * * * * * * * *
121777 TAGA-GTTCCTACTCTCAGTTTTGTCAGTCGGCTTTGACCCTA
1 GAGACTTTCCTTCCCTTAG-TCTGCCTGTCGGCTTTGACCCTG
* *
121819 GAGACTTT-CTTACCCTTAGTCTACCTGTCGGCTTTAACCCTG
1 GAGACTTTCCTT-CCCTTAGTCTGCCTGTCGGCTTTGACCCTG
* * *
121861 AAGACTTTCCTTCCCTCAGTCTGCCCGTCGGC-TTGACCCTG
1 GAGACTTTCCTTCCCTTAGTCTGCCTGTCGGCTTTGACCCTG
* * * * *
121902 AAGACTTTTCTACCCTTAG-CTTGCCTGTCAGCTTTGACCTTG
1 GAGACTTTCCTTCCCTTAGTC-TGCCTGTCGGCTTTGACCCTG
* * * * *
121944 AAGACTTT-TTTACCTTTAGCCTGCCTGTCGGTTTTGACCC
1 GAGACTTTCCTT-CCCTTAGTCTGCCTGTCGGCTTTGACCC
121984 AAAAGAATCT
Statistics
Matches: 735, Mismatches: 118, Indels: 44
0.82 0.13 0.05
Matches are distributed among these distances:
38 3 0.00
39 31 0.04
40 1 0.00
41 107 0.15
42 554 0.75
43 39 0.05
ACGTcount: A:0.14, C:0.30, G:0.18, T:0.38
Consensus pattern (42 bp):
GAGACTTTCCTTCCCTTAGTCTGCCTGTCGGCTTTGACCCTG
Found at i:128212 original size:31 final size:31
Alignment explanation
Indices: 128175--128233 Score: 91
Period size: 31 Copynumber: 1.9 Consensus size: 31
128165 ACCTGAAACT
* * *
128175 AGCAGCTCGAGCTTCTTCCAGCTTCCACACC
1 AGCAGCTCAAGCCTCTTCCAACTTCCACACC
128206 AGCAGCTCAAGCCTCTTCCAACTTCCAC
1 AGCAGCTCAAGCCTCTTCCAACTTCCAC
128234 GAACACAGCA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.22, C:0.42, G:0.14, T:0.22
Consensus pattern (31 bp):
AGCAGCTCAAGCCTCTTCCAACTTCCACACC
Found at i:128379 original size:32 final size:32
Alignment explanation
Indices: 128317--128380 Score: 83
Period size: 32 Copynumber: 2.0 Consensus size: 32
128307 CCGCGAGCAC
* *
128317 TCCAGCAGCGACAGCATCCACCAACAGCAGCT
1 TCCAGCAGCAACAGCATCCAACAACAGCAGCT
** *
128349 TCCAGCAGCAACAGCATTGAACAACGGCAGCT
1 TCCAGCAGCAACAGCATCCAACAACAGCAGCT
128381 CTAGCAATCA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
32 27 1.00
ACGTcount: A:0.33, C:0.36, G:0.20, T:0.11
Consensus pattern (32 bp):
TCCAGCAGCAACAGCATCCAACAACAGCAGCT
Found at i:129139 original size:11 final size:11
Alignment explanation
Indices: 129117--129150 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
129107 AGTAAAATTT
129117 TAAAAAATATAA
1 TAAAAAA-ATAA
129129 TAAAAAAATAA
1 TAAAAAAATAA
*
129140 TAACAAAATAA
1 TAAAAAAATAA
129151 AATAATATAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
11 14 0.67
12 7 0.33
ACGTcount: A:0.76, C:0.03, G:0.00, T:0.21
Consensus pattern (11 bp):
TAAAAAAATAA
Found at i:129163 original size:16 final size:16
Alignment explanation
Indices: 129117--129164 Score: 57
Period size: 16 Copynumber: 3.1 Consensus size: 16
129107 AGTAAAATTT
129117 TAAAA-AATATAATAAA
1 TAAAATAATATAA-AAA
129133 -AAAATAATA-ACAAAA
1 TAAAATAATATA-AAAA
129148 TAAAATAATATAAAAA
1 TAAAATAATATAAAAA
129164 T
1 T
129165 CTTTTCATCT
Statistics
Matches: 28, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
15 8 0.29
16 19 0.68
17 1 0.04
ACGTcount: A:0.75, C:0.02, G:0.00, T:0.23
Consensus pattern (16 bp):
TAAAATAATATAAAAA
Done.