Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Scaffold307

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 622582
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35


File 5 of 5

Found at i:621958 original size:18 final size:18

Alignment explanation


    Indices: 621918--621958  Score: 50
    Period size: 17  Copynumber: 2.3  Consensus size: 18

     621908 ATTAAAAAGA

                              
     621918 TAAAAAAAAATTTGTAA-
          1 TAAAAAAAAATTTGTAAT

                                
     621935 TAAAAAAATAATTT-TAAAT
          1 TAAAAAAA-AATTTGT-AAT

                 
     621954 TAAAA
          1 TAAAA

     621959 TAATTTATTA


Statistics
Matches: 21,  Mismatches: 0, Indels: 4
        0.84            0.00        0.16

Matches are distributed among these distances:
  17    9  0.43
  18    7  0.33
  19    5  0.24

ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32


Consensus pattern (18 bp):   
TAAAAAAAAATTTGTAAT

Done.