Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold308
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 505154
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.32
File 1 of 4
Found at i:12143 original size:19 final size:19
Alignment explanation
Indices: 12099--12154 Score: 76
Period size: 19 Copynumber: 2.9 Consensus size: 19
12089 CTGCTAGTTT
* **
12099 CATGCATCGATACAATTGTC
1 CATGTATCGATACAA-TGAA
12119 CATGTATCGATACAATGAA
1 CATGTATCGATACAATGAA
12138 CATGTATCGATACAATG
1 CATGTATCGATACAATG
12155 TATCGATACA
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
19 19 0.58
20 14 0.42
ACGTcount: A:0.36, C:0.20, G:0.16, T:0.29
Consensus pattern (19 bp):
CATGTATCGATACAATGAA
Found at i:12157 original size:13 final size:13
Alignment explanation
Indices: 12139--12165 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
12129 TACAATGAAC
12139 ATGTATCGATACA
1 ATGTATCGATACA
12152 ATGTATCGATACA
1 ATGTATCGATACA
12165 A
1 A
12166 AGCAACATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:12178 original size:33 final size:32
Alignment explanation
Indices: 12120--12184 Score: 112
Period size: 33 Copynumber: 2.0 Consensus size: 32
12110 ACAATTGTCC
*
12120 ATGTATCGATACAATGAACATGTATCGATACA
1 ATGTATCGATACAAAGAACATGTATCGATACA
12152 ATGTATCGATACAAAGCAACATGTATCGATACA
1 ATGTATCGATACAAAG-AACATGTATCGATACA
12185 TTTGGGTGTG
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
32 15 0.48
33 16 0.52
ACGTcount: A:0.42, C:0.17, G:0.15, T:0.26
Consensus pattern (32 bp):
ATGTATCGATACAAAGAACATGTATCGATACA
Found at i:12761 original size:39 final size:39
Alignment explanation
Indices: 12712--12786 Score: 132
Period size: 39 Copynumber: 1.9 Consensus size: 39
12702 TTTCTCCCCT
*
12712 TAAAAAATTCTCCCCCTTAAATGATTATCTTCTCCTTTA
1 TAAAAAATTCTCCCCCTTAAACGATTATCTTCTCCTTTA
*
12751 TAAAAAATTCTCCCCTTTAAACGATTATCTTCTCCT
1 TAAAAAATTCTCCCCCTTAAACGATTATCTTCTCCT
12787 CATTTTTATA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 34 1.00
ACGTcount: A:0.31, C:0.27, G:0.03, T:0.40
Consensus pattern (39 bp):
TAAAAAATTCTCCCCCTTAAACGATTATCTTCTCCTTTA
Found at i:12771 original size:17 final size:17
Alignment explanation
Indices: 12703--12771 Score: 50
Period size: 17 Copynumber: 3.8 Consensus size: 17
12693 GTTTTCATTT
12703 TTCTCCCC-TTAAAAAA
1 TTCTCCCCTTTAAAAAA
* * *
12719 TTCTCCCCCTTAAATGAT
1 TTCTCCCCTTTAAA-AAA
*
12737 TATCTTCTCCTTTATAAAAAA
1 T-TC-TC-CCCTT-TAAAAAA
12758 TTCTCCCCTTTAAA
1 TTCTCCCCTTTAAA
12772 CGATTATCTT
Statistics
Matches: 40, Mismatches: 7, Indels: 11
0.69 0.12 0.19
Matches are distributed among these distances:
16 8 0.20
17 9 0.22
18 6 0.15
19 4 0.10
20 4 0.10
21 5 0.12
22 4 0.10
ACGTcount: A:0.30, C:0.29, G:0.01, T:0.39
Consensus pattern (17 bp):
TTCTCCCCTTTAAAAAA
Found at i:14524 original size:11 final size:11
Alignment explanation
Indices: 14508--14538 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
14498 GTGAAAAACA
14508 GAAAATTTGTG
1 GAAAATTTGTG
14519 GAAAATTTGTG
1 GAAAATTTGTG
*
14530 AAAAATTTG
1 GAAAATTTG
14539 ATGAATTTTG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (11 bp):
GAAAATTTGTG
Found at i:14664 original size:13 final size:13
Alignment explanation
Indices: 14646--14674 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
14636 AAATAGTACC
14646 CAATGTATCGATA
1 CAATGTATCGATA
14659 CAATGTATCGATA
1 CAATGTATCGATA
14672 CAA
1 CAA
14675 GAAATGTTGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.41, C:0.17, G:0.14, T:0.28
Consensus pattern (13 bp):
CAATGTATCGATA
Found at i:20964 original size:19 final size:19
Alignment explanation
Indices: 20920--20975 Score: 76
Period size: 19 Copynumber: 2.9 Consensus size: 19
20910 CTGCCAGTTT
**
20920 CATGTATCGATACAATTGTC
1 CATGTATCGATACAA-TGAA
20940 CATGTATCGATACAATGAA
1 CATGTATCGATACAATGAA
*
20959 CATGTATCGATATAATG
1 CATGTATCGATACAATG
20976 TATCGATACA
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
19 18 0.55
20 15 0.45
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (19 bp):
CATGTATCGATACAATGAA
Found at i:22921 original size:20 final size:21
Alignment explanation
Indices: 22896--22949 Score: 67
Period size: 20 Copynumber: 2.7 Consensus size: 21
22886 GTTGCAAGCA
*
22896 ATGTATCGATACAATT-CATC
1 ATGTATCGATACAATTGCACC
*
22916 ATGTATCGATA-AATTGTACC
1 ATGTATCGATACAATTGCACC
*
22936 ATGTATTGATACAA
1 ATGTATCGATACAA
22950 ATAGTGGTAG
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
19 4 0.14
20 23 0.79
21 2 0.07
ACGTcount: A:0.37, C:0.15, G:0.13, T:0.35
Consensus pattern (21 bp):
ATGTATCGATACAATTGCACC
Found at i:23629 original size:22 final size:22
Alignment explanation
Indices: 23604--23645 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
23594 AGATAAACAT
*
23604 ATTTCTCCCGCTTTATCAAAGC
1 ATTTCTCCCCCTTTATCAAAGC
*
23626 ATTTCTCCCCCTTTGTCAAA
1 ATTTCTCCCCCTTTATCAAA
23646 TCTTTAAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.21, C:0.33, G:0.07, T:0.38
Consensus pattern (22 bp):
ATTTCTCCCCCTTTATCAAAGC
Found at i:25546 original size:13 final size:13
Alignment explanation
Indices: 25525--25558 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
25515 GTAACCCATG
*
25525 TATCAATACAATA
1 TATCGATACAATA
*
25538 TATCGATACAATG
1 TATCGATACAATA
25551 TATCGATA
1 TATCGATA
25559 TAAGGAATGT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.44, C:0.15, G:0.09, T:0.32
Consensus pattern (13 bp):
TATCGATACAATA
Found at i:31114 original size:19 final size:20
Alignment explanation
Indices: 31070--31123 Score: 74
Period size: 19 Copynumber: 2.8 Consensus size: 20
31060 CTGCCAATTT
***
31070 CATGTATCGATACAATTGTC
1 CATGTATCGATACAATTAAA
31090 CATGTATCGATACAA-TAAA
1 CATGTATCGATACAATTAAA
31109 CATGTATCGATACAA
1 CATGTATCGATACAA
31124 AGCATAATGT
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
19 16 0.52
20 15 0.48
ACGTcount: A:0.39, C:0.19, G:0.13, T:0.30
Consensus pattern (20 bp):
CATGTATCGATACAATTAAA
Found at i:32114 original size:5 final size:5
Alignment explanation
Indices: 32104--32134 Score: 62
Period size: 5 Copynumber: 6.2 Consensus size: 5
32094 GAAATAGGAG
32104 AAATC AAATC AAATC AAATC AAATC AAATC A
1 AAATC AAATC AAATC AAATC AAATC AAATC A
32135 TGAACATTCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.61, C:0.19, G:0.00, T:0.19
Consensus pattern (5 bp):
AAATC
Found at i:32403 original size:42 final size:42
Alignment explanation
Indices: 32355--32935 Score: 631
Period size: 42 Copynumber: 14.0 Consensus size: 42
32345 TAAACTTCTG
* *
32355 GAGACTTTCCTTCCCTTAGTCTGTCTGTCGACTTTGACCCTA
1 GAGACTTTCCTTCCCTTAGTCTGCCTGTCGGCTTTGACCCTA
* * * *
32397 AAGACTTTCTTTCCCTTAGTCTGCCTATCGGTTTTGACCCTA
1 GAGACTTTCCTTCCCTTAGTCTGCCTGTCGGCTTTGACCCTA
* * *
32439 GAGACTTTCATTCCCTTAGTCTGTCTATCGGCTTTGACCCTA
1 GAGACTTTCCTTCCCTTAGTCTGCCTGTCGGCTTTGACCCTA
* * * *
32481 GAGACTTTCGTTCCCTTAGTCTGCCTATCAGCTTTGACCCTG
1 GAGACTTTCCTTCCCTTAGTCTGCCTGTCGGCTTTGACCCTA
* * * * * *
32523 GACACTTTCATTCCTTTAGTCTGCCTATCGGCTTTGACCTTG
1 GAGACTTTCCTTCCCTTAGTCTGCCTGTCGGCTTTGACCCTA
* * *
32565 GAGATTTTCCTTCCTTTAGTCTGCTTGTCGGCTTTGACCCTA
1 GAGACTTTCCTTCCCTTAGTCTGCCTGTCGGCTTTGACCCTA
*
32607 GAGACTTTCCTTCCCTTAGTCTGCTTGTCGGCTTTGACCCTA
1 GAGACTTTCCTTCCCTTAGTCTGCCTGTCGGCTTTGACCCTA
* * * *
32649 GAGACTTTCTTTCCCTTA---AG--T-T-GGCTTTGACCTTG
1 GAGACTTTCCTTCCCTTAGTCTGCCTGTCGGCTTTGACCCTA
* * * * *
32684 GAGACTTTCCTTCCCTCAGTCTGCTTGTCGACTTTGACCTTG
1 GAGACTTTCCTTCCCTTAGTCTGCCTGTCGGCTTTGACCCTA
* ** *
32726 GAGACTTTTC-TAGCTTCAGTCTGCTTGTCGGCTTTGACCCTA
1 GAGACTTTCCTTCCCTT-AGTCTGCCTGTCGGCTTTGACCCTA
* *
32768 GAGACTTTCCTTCCCTTAGTTTGCCTGTCGGCTTTGACCCTG
1 GAGACTTTCCTTCCCTTAGTCTGCCTGTCGGCTTTGACCCTA
* * *
32810 GAGACTTTCCTACCCTCAGTCTGCCTGTCGGCTTTGACCCTG
1 GAGACTTTCCTTCCCTTAGTCTGCCTGTCGGCTTTGACCCTA
* * * * *
32852 GAGACTTTTCTACCTTTAGCCTGCCTGTC-GATCTTGACCCTA
1 GAGACTTTCCTTCCCTTAGTCTGCCTGTCGGCT-TTGACCCTA
* * * *
32894 GAGACTTTTCTACCCTCAGTCTGCCAGTCGGCTTTGACCCTA
1 GAGACTTTCCTTCCCTTAGTCTGCCTGTCGGCTTTGACCCTA
32936 AAGATGGCCT
Statistics
Matches: 465, Mismatches: 63, Indels: 22
0.85 0.11 0.04
Matches are distributed among these distances:
35 27 0.06
36 1 0.00
37 1 0.00
38 1 0.00
39 1 0.00
40 1 0.00
41 6 0.01
42 421 0.91
43 6 0.01
ACGTcount: A:0.14, C:0.30, G:0.19, T:0.38
Consensus pattern (42 bp):
GAGACTTTCCTTCCCTTAGTCTGCCTGTCGGCTTTGACCCTA
Found at i:32961 original size:84 final size:84
Alignment explanation
Indices: 32671--32990 Score: 317
Period size: 84 Copynumber: 3.8 Consensus size: 84
32661 CCCTTAAGTT
* * * * * * *
32671 GGCTTTGACCTTGGAGACTTTCCTTCCCTCAGTCTGCTTGTCGA-CTTTGACCTTGGAGACTTTT
1 GGCTTTGACCCTAGAGACTTTCC-TCCTTTAGTTTGCCTGTCGATCTTTGACCCTGGAGACTTTT
* * *
32735 CTAGCTTCAGTCTGCTTGTC
65 CTACCCTCAGTCTGCCTGTC
* * *
32755 GGCTTTGACCCTAGAGACTTTCCTTCCCTTAGTTTGCCTGTCG-GCTTTGACCCTGGAGACTTTC
1 GGCTTTGACCCTAGAGACTTTCC-TCCTTTAGTTTGCCTGTCGATCTTTGACCCTGGAGACTTTT
32819 CTACCCTCAGTCTGCCTGTC
65 CTACCCTCAGTCTGCCTGTC
* * ** *
32839 GGCTTTGACCCTGGAGACTTTTCTACCTTTAGCCTGCCTGTCGATC-TTGACCCTAGAGACTTTT
1 GGCTTTGACCCTAGAGACTTTCCT-CCTTTAGTTTGCCTGTCGATCTTTGACCCTGGAGACTTTT
*
32903 CTACCCTCAGTCTGCCAGTC
65 CTACCCTCAGTCTGCCTGTC
* ** * * *
32923 GGCTTTGACCCTAAAGA-TGGCCTCATTTAAAGTTTGCCTGTCGGT-TTTGACCCAGGAGAATCT
1 GGCTTTGACCCTAGAGACTTTCCTCCTTT--AGTTTGCCTGTCGATCTTTGACCCTGGAG-A-CT
32986 TTTCT
62 TTTCT
32991 TTTTTTGTTT
Statistics
Matches: 198, Mismatches: 30, Indels: 14
0.82 0.12 0.06
Matches are distributed among these distances:
82 4 0.02
83 4 0.02
84 181 0.91
85 2 0.01
86 7 0.04
ACGTcount: A:0.15, C:0.29, G:0.21, T:0.36
Consensus pattern (84 bp):
GGCTTTGACCCTAGAGACTTTCCTCCTTTAGTTTGCCTGTCGATCTTTGACCCTGGAGACTTTTC
TACCCTCAGTCTGCCTGTC
Found at i:33569 original size:31 final size:31
Alignment explanation
Indices: 33534--33601 Score: 109
Period size: 31 Copynumber: 2.2 Consensus size: 31
33524 TGCATGCAAG
* *
33534 GCAATGTAGCATGTAATCATGGGAGACACAT
1 GCAATGTAGCATGCAATCATGGGAGACACAA
*
33565 GCAATGTAGCATGCAATCATGGGGGACACAA
1 GCAATGTAGCATGCAATCATGGGAGACACAA
33596 GCAATG
1 GCAATG
33602 GAAAGAAAGC
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (31 bp):
GCAATGTAGCATGCAATCATGGGAGACACAA
Found at i:34204 original size:24 final size:24
Alignment explanation
Indices: 34172--34225 Score: 90
Period size: 24 Copynumber: 2.2 Consensus size: 24
34162 TCACGAACAC
*
34172 AGCAGCAGCATCCACGAACATGGT
1 AGCAGCAGCATCCACGAACACGGT
*
34196 AGCAGCAGCATCCATGAACACGGT
1 AGCAGCAGCATCCACGAACACGGT
34220 AGCAGC
1 AGCAGC
34226 TCAAGCCTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.33, C:0.30, G:0.26, T:0.11
Consensus pattern (24 bp):
AGCAGCAGCATCCACGAACACGGT
Found at i:34309 original size:32 final size:32
Alignment explanation
Indices: 34273--34336 Score: 92
Period size: 32 Copynumber: 2.0 Consensus size: 32
34263 GTGCGAGCAC
*
34273 TCCAGCAACGACAGCATCCACCAACAGTAGCT
1 TCCAGCAACGACAGCATCCAACAACAGTAGCT
* **
34305 TCCAGCAATGACAGCATTGAACAACAGTAGCT
1 TCCAGCAACGACAGCATCCAACAACAGTAGCT
34337 CTAGCAATCA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.36, C:0.31, G:0.17, T:0.16
Consensus pattern (32 bp):
TCCAGCAACGACAGCATCCAACAACAGTAGCT
Found at i:35146 original size:16 final size:16
Alignment explanation
Indices: 35127--35158 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
35117 ATATAATAAC
*
35127 AAAATAATAACAAAAT
1 AAAATAATAAAAAAAT
35143 AAAATAATAAAAAAAT
1 AAAATAATAAAAAAAT
35159 TCTTTTCATC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.78, C:0.03, G:0.00, T:0.19
Consensus pattern (16 bp):
AAAATAATAAAAAAAT
Found at i:35158 original size:11 final size:11
Alignment explanation
Indices: 35119--35144 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
35109 TTAAAAAAAT
35119 ATAATAACAAA
1 ATAATAACAAA
35130 ATAATAACAAA
1 ATAATAACAAA
35141 ATAA
1 ATAA
35145 AATAATAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.73, C:0.08, G:0.00, T:0.19
Consensus pattern (11 bp):
ATAATAACAAA
Found at i:38574 original size:27 final size:26
Alignment explanation
Indices: 38544--38594 Score: 84
Period size: 27 Copynumber: 1.9 Consensus size: 26
38534 TATCATTATC
*
38544 GGGGATACTTCAACCCCATTCTTTCGA
1 GGGGATACTCCAACCCCATT-TTTCGA
38571 GGGGATACTCCAACCCCATTTTTC
1 GGGGATACTCCAACCCCATTTTTC
38595 AATCAAAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
26 4 0.17
27 19 0.83
ACGTcount: A:0.22, C:0.31, G:0.18, T:0.29
Consensus pattern (26 bp):
GGGGATACTCCAACCCCATTTTTCGA
Found at i:42872 original size:13 final size:13
Alignment explanation
Indices: 42854--42878 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
42844 TATCGAAACT
42854 TGTATCGATACAA
1 TGTATCGATACAA
42867 TGTATCGATACA
1 TGTATCGATACA
42879 CATAAAATAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:45131 original size:21 final size:21
Alignment explanation
Indices: 45098--45147 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 21
45088 TTGCAAGTTG
*
45098 AAATAAAGAAGTTGGCTAATGA
1 AAATAAAGAAGTTAGCTAA-GA
*
45120 AAATAATG-AGTTAGCTAAGAA
1 AAATAAAGAAGTTAGCTAAG-A
45141 AAATAAA
1 AAATAAA
45148 AACTTGCATA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
20 1 0.04
21 16 0.67
22 7 0.29
ACGTcount: A:0.56, C:0.04, G:0.18, T:0.22
Consensus pattern (21 bp):
AAATAAAGAAGTTAGCTAAGA
Found at i:46965 original size:15 final size:15
Alignment explanation
Indices: 46945--46975 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
46935 TAAAAATGTC
*
46945 CAAAATGAGGAAGCT
1 CAAAATGAAGAAGCT
46960 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
46975 C
1 C
46976 CAAACGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.16, G:0.23, T:0.13
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:49074 original size:13 final size:13
Alignment explanation
Indices: 49056--49080 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
49046 CATTTTTCTT
49056 TGTATCGATACAC
1 TGTATCGATACAC
49069 TGTATCGATACA
1 TGTATCGATACA
49081 GGAGGATTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAC
Found at i:49235 original size:20 final size:20
Alignment explanation
Indices: 49192--49237 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 20
49182 AAATCTTTTG
49192 CAAAATACTTGTTTTTCACTT
1 CAAAATACTTGTTTTTCAC-T
*
49213 CAAATTACTTCGTTTTTCA-T
1 CAAAATACTT-GTTTTTCACT
49233 CAAAA
1 CAAAA
49238 CCAGCATCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
20 5 0.23
21 9 0.41
22 8 0.36
ACGTcount: A:0.33, C:0.20, G:0.04, T:0.43
Consensus pattern (20 bp):
CAAAATACTTGTTTTTCACT
Found at i:51640 original size:19 final size:19
Alignment explanation
Indices: 51612--51676 Score: 61
Period size: 21 Copynumber: 3.6 Consensus size: 19
51602 TAGCCAAACT
*
51612 TGTATTGATACACAAAATA
1 TGTATCGATACACAAAATA
51631 TGTATCGAT--AC---A-A
1 TGTATCGATACACAAAATA
51644 TGTATCGATACACATAAAATA
1 TGTATCGATACAC--AAAATA
51665 TGTATCGATACA
1 TGTATCGATACA
51677 TTGGCTTGTA
Statistics
Matches: 37, Mismatches: 1, Indels: 14
0.71 0.02 0.27
Matches are distributed among these distances:
13 10 0.27
14 1 0.03
15 2 0.05
17 2 0.05
19 8 0.22
20 1 0.03
21 13 0.35
ACGTcount: A:0.43, C:0.14, G:0.12, T:0.31
Consensus pattern (19 bp):
TGTATCGATACACAAAATA
Found at i:51648 original size:13 final size:13
Alignment explanation
Indices: 51630--51655 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
51620 TACACAAAAT
51630 ATGTATCGATACA
1 ATGTATCGATACA
51643 ATGTATCGATACA
1 ATGTATCGATACA
51656 CATAAAATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:51668 original size:34 final size:32
Alignment explanation
Indices: 51612--51676 Score: 103
Period size: 34 Copynumber: 2.0 Consensus size: 32
51602 TAGCCAAACT
*
51612 TGTATTGATACACAAAATATGTATCGATACAA
1 TGTATCGATACACAAAATATGTATCGATACAA
51644 TGTATCGATACACATAAAATATGTATCGATACA
1 TGTATCGATACAC--AAAATATGTATCGATACA
51677 TTGGCTTGTA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
32 12 0.40
34 18 0.60
ACGTcount: A:0.43, C:0.14, G:0.12, T:0.31
Consensus pattern (32 bp):
TGTATCGATACACAAAATATGTATCGATACAA
Found at i:53261 original size:197 final size:197
Alignment explanation
Indices: 52914--53268 Score: 507
Period size: 197 Copynumber: 1.8 Consensus size: 197
52904 ATAATTTATT
* * *
52914 TTATTACATGTATTTATTAGAAATTTCTGAAGACATTATATTTATCGGTAATCTTTATTGTAATT
1 TTATTACATGTATTTATTAAAAATTTCTAAAGACATTATATTTATCAGTAATCTTTATTGTAATT
* * * *
52979 TAGTTTTTGTTATTTGTAAAAAACAATTACTATTGAATATTACTAAAATTAGACAAACATATTAC
66 TAGTTTTTATTATTTGTAAAAAACAATTACCATTGAACATTACTAAAATTACACAAACATATTAC
*
53044 AAATTATATAAATCATTATAGTATTTATTAGACAACAATTTTACATAAGCACATTCATAGTTTAT
131 AAATTACATAAATCATTATAGTATTTATTAGACAACAATTTTACATAAGCACATTCATAGTTTAT
53109 CA
196 CA
* *
53111 TTATTACATGTATTTATTAAAAATTAT-TAAAGACATTATATTTATTAGTAATCTTTGTTGTAAT
1 TTATTACATGTATTTATTAAAAATT-TCTAAAGACATTATATTTATCAGTAATCTTTATTGTAAT
* * ** * *
53175 TTAGTTTTTATTATTTGTGAAAAATAATTACCACTT-TCCATTACTGAAATTACACATACATATT
65 TTAGTTTTTATTATTTGTAAAAAACAATTACCA-TTGAACATTACTAAAATTACACAAACATATT
* * *
53239 ATAACTTACATAAATTATTATAGTATTTAT
129 ACAAATTACATAAATCATTATAGTATTTAT
53269 AAAAAAAAAA
Statistics
Matches: 137, Mismatches: 19, Indels: 4
0.86 0.12 0.03
Matches are distributed among these distances:
197 134 0.98
198 3 0.02
ACGTcount: A:0.39, C:0.09, G:0.07, T:0.45
Consensus pattern (197 bp):
TTATTACATGTATTTATTAAAAATTTCTAAAGACATTATATTTATCAGTAATCTTTATTGTAATT
TAGTTTTTATTATTTGTAAAAAACAATTACCATTGAACATTACTAAAATTACACAAACATATTAC
AAATTACATAAATCATTATAGTATTTATTAGACAACAATTTTACATAAGCACATTCATAGTTTAT
CA
Found at i:55035 original size:15 final size:14
Alignment explanation
Indices: 55005--55043 Score: 53
Period size: 15 Copynumber: 2.8 Consensus size: 14
54995 AAATTTTCTC
55005 TTTTTTTT-TTCCT
1 TTTTTTTTCTTCCT
55018 TTTTTTTTCTTCCAT
1 TTTTTTTTCTTCC-T
*
55033 TTTCTTTTCTT
1 TTTTTTTTCTT
55044 TTATTTCTCT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 8 0.35
14 4 0.17
15 11 0.48
ACGTcount: A:0.03, C:0.18, G:0.00, T:0.79
Consensus pattern (14 bp):
TTTTTTTTCTTCCT
Found at i:55054 original size:26 final size:26
Alignment explanation
Indices: 55006--55059 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 26
54996 AATTTTCTCT
* *
55006 TTTTTTTTTCCTTTTTTTTTCTTCCA
1 TTTTCTTTTCCTTTTTTTCTCTTCCA
*
55032 TTTTCTTTT-CTTTTATTTCTCTTTCA
1 TTTTCTTTTCCTTTT-TTTCTCTTCCA
55058 TT
1 TT
55060 CTTCATTAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 5 0.21
26 19 0.79
ACGTcount: A:0.06, C:0.19, G:0.00, T:0.76
Consensus pattern (26 bp):
TTTTCTTTTCCTTTTTTTCTCTTCCA
Found at i:55825 original size:22 final size:22
Alignment explanation
Indices: 55800--55841 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
55790 ACTTAATAAA
55800 ATTAAT-ATAAATAATTTAATTT
1 ATTAATAATAAA-AATTTAATTT
*
55822 ATTAATAATAAAATTTTAAT
1 ATTAATAATAAAAATTTAAT
55842 ACTATAATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 13 0.72
23 5 0.28
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (22 bp):
ATTAATAATAAAAATTTAATTT
Found at i:56353 original size:5 final size:5
Alignment explanation
Indices: 56305--56334 Score: 51
Period size: 5 Copynumber: 6.0 Consensus size: 5
56295 GCACTTAGAT
*
56305 GAAAA GAAAA GAAAA GAAAG GAAAA GAAAA
1 GAAAA GAAAA GAAAA GAAAA GAAAA GAAAA
56335 AATTACTAGC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (5 bp):
GAAAA
Found at i:58418 original size:18 final size:18
Alignment explanation
Indices: 58395--58435 Score: 82
Period size: 18 Copynumber: 2.3 Consensus size: 18
58385 ATCAATGACG
58395 TATCTTCCATGTTTGAAA
1 TATCTTCCATGTTTGAAA
58413 TATCTTCCATGTTTGAAA
1 TATCTTCCATGTTTGAAA
58431 TATCT
1 TATCT
58436 GGATCGGATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.27, C:0.17, G:0.10, T:0.46
Consensus pattern (18 bp):
TATCTTCCATGTTTGAAA
Found at i:58614 original size:66 final size:67
Alignment explanation
Indices: 58531--58661 Score: 210
Period size: 66 Copynumber: 2.0 Consensus size: 67
58521 TTAAAATCAA
* *
58531 TTTAACTAGTAAGAAAACTGCTAAAATACAATTAAAAACTAAAAAAAA-TTATTTTTATATTATT
1 TTTAACTAGTAAAAAAACTACTAAAATACAATTAAAAACTAAAAAAAATTTATTTTTATATTATT
58595 TG
66 TG
* * *
58597 TTTAACTAGTAAAAAAACTACTAAAATACCATTTAAAACTAAAAAAAATTTGTTTTTATATTATT
1 TTTAACTAGTAAAAAAACTACTAAAATACAATTAAAAACTAAAAAAAATTTATTTTTATATTATT
58662 CTTTTCAAAA
Statistics
Matches: 59, Mismatches: 5, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
66 44 0.75
67 15 0.25
ACGTcount: A:0.50, C:0.08, G:0.05, T:0.37
Consensus pattern (67 bp):
TTTAACTAGTAAAAAAACTACTAAAATACAATTAAAAACTAAAAAAAATTTATTTTTATATTATT
TG
Found at i:60696 original size:28 final size:28
Alignment explanation
Indices: 60663--60718 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
60653 AGGATGAGGT
60663 GCATGCAAAGTTGCGACAGGTTATGCAA
1 GCATGCAAAGTTGCGACAGGTTATGCAA
60691 GCATGCAAAGTTGCGACAGGTTATGCAA
1 GCATGCAAAGTTGCGACAGGTTATGCAA
60719 CAAAGCACTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (28 bp):
GCATGCAAAGTTGCGACAGGTTATGCAA
Found at i:67332 original size:13 final size:12
Alignment explanation
Indices: 67302--67344 Score: 50
Period size: 13 Copynumber: 3.4 Consensus size: 12
67292 AAAATTGAAA
*
67302 TTCTTTTCTATT
1 TTCTTTCCTATT
67314 TGTCTTTCCTACTT
1 T-TCTTTCCTA-TT
*
67328 TTCTTCCCTATT
1 TTCTTTCCTATT
67340 TTCTT
1 TTCTT
67345 CTCTTAATTT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
12 8 0.30
13 16 0.59
14 3 0.11
ACGTcount: A:0.07, C:0.26, G:0.02, T:0.65
Consensus pattern (12 bp):
TTCTTTCCTATT
Found at i:67360 original size:14 final size:14
Alignment explanation
Indices: 67337--67366 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
67327 TTTCTTCCCT
67337 ATTTTCTTCTCTTA
1 ATTTTCTTCTCTTA
*
67351 ATTTTTTTCTCTTA
1 ATTTTCTTCTCTTA
67365 AT
1 AT
67367 CTTCCTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.17, C:0.17, G:0.00, T:0.67
Consensus pattern (14 bp):
ATTTTCTTCTCTTA
Found at i:68343 original size:20 final size:21
Alignment explanation
Indices: 68312--68350 Score: 71
Period size: 20 Copynumber: 1.9 Consensus size: 21
68302 AGGTCAAAAC
68312 CCGAGAATGTATCGATACACA
1 CCGAGAATGTATCGATACACA
68333 CCGAG-ATGTATCGATACA
1 CCGAGAATGTATCGATACA
68351 TATTGCTTAG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 13 0.72
21 5 0.28
ACGTcount: A:0.36, C:0.23, G:0.21, T:0.21
Consensus pattern (21 bp):
CCGAGAATGTATCGATACACA
Found at i:68399 original size:33 final size:33
Alignment explanation
Indices: 68341--68403 Score: 92
Period size: 33 Copynumber: 1.9 Consensus size: 33
68331 CACCGAGATG
*
68341 TATCGATACATATTGCTTAGTATCGATACAATA
1 TATCGATACATATTGCTTAGAATCGATACAATA
*
68374 TATCGATACATATTGAGTTA-AATCGATACA
1 TATCGATACATATTG-CTTAGAATCGATACA
68404 TAAAACTGGC
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
33 24 0.89
34 3 0.11
ACGTcount: A:0.38, C:0.14, G:0.13, T:0.35
Consensus pattern (33 bp):
TATCGATACATATTGCTTAGAATCGATACAATA
Found at i:68456 original size:20 final size:20
Alignment explanation
Indices: 68431--68484 Score: 74
Period size: 20 Copynumber: 2.7 Consensus size: 20
68421 AAAACTCACT
68431 TTGTATCGATACAT-GATGAA
1 TTGTATCGATACATAG-TGAA
*
68451 TTGTATCGATACATAGTGCA
1 TTGTATCGATACATAGTGAA
*
68471 TTGAATCGATACAT
1 TTGTATCGATACAT
68485 TGAGCCCAAC
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
20 30 0.97
21 1 0.03
ACGTcount: A:0.33, C:0.13, G:0.19, T:0.35
Consensus pattern (20 bp):
TTGTATCGATACATAGTGAA
Found at i:70060 original size:3 final size:3
Alignment explanation
Indices: 70052--70094 Score: 77
Period size: 3 Copynumber: 14.3 Consensus size: 3
70042 TCAACCATCA
*
70052 ATG ATG ATG AAG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG A
1 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG A
70095 AGTTGACTCA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.37, C:0.00, G:0.33, T:0.30
Consensus pattern (3 bp):
ATG
Found at i:75409 original size:19 final size:19
Alignment explanation
Indices: 75385--75452 Score: 85
Period size: 19 Copynumber: 3.9 Consensus size: 19
75375 AATTCAACGA
75385 TTTGTATCGATACATAAGT
1 TTTGTATCGATACATAAGT
75404 TTTGTATCGATAC--AA--
1 TTTGTATCGATACATAAGT
75419 --TGTATCGATACATAAGT
1 TTTGTATCGATACATAAGT
*
75436 ATTGTATCGATACATAA
1 TTTGTATCGATACATAA
75453 TTAGCTACTG
Statistics
Matches: 43, Mismatches: 0, Indels: 12
0.78 0.00 0.22
Matches are distributed among these distances:
13 11 0.26
15 2 0.05
17 2 0.05
19 28 0.65
ACGTcount: A:0.35, C:0.12, G:0.15, T:0.38
Consensus pattern (19 bp):
TTTGTATCGATACATAAGT
Found at i:75423 original size:32 final size:32
Alignment explanation
Indices: 75387--75449 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
75377 TTCAACGATT
*
75387 TGTATCGATACATAAGTTTTGTATCGATACAA
1 TGTATCGATACATAAGTATTGTATCGATACAA
75419 TGTATCGATACATAAGTATTGTATCGATACA
1 TGTATCGATACATAAGTATTGTATCGATACA
75450 TAATTAGCTA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.35, C:0.13, G:0.16, T:0.37
Consensus pattern (32 bp):
TGTATCGATACATAAGTATTGTATCGATACAA
Found at i:75424 original size:13 final size:13
Alignment explanation
Indices: 75406--75430 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
75396 ACATAAGTTT
75406 TGTATCGATACAA
1 TGTATCGATACAA
75419 TGTATCGATACA
1 TGTATCGATACA
75431 TAAGTATTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:75510 original size:13 final size:13
Alignment explanation
Indices: 75492--75517 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
75482 CATTTTTCTG
75492 TGTATCGATACAT
1 TGTATCGATACAT
75505 TGTATCGATACAT
1 TGTATCGATACAT
75518 GGATCTTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:75514 original size:33 final size:33
Alignment explanation
Indices: 75472--75538 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
75462 GCCAAGGAAA
***
75472 TGTATCGATACATTTTTCTGTGTATCGATACAT
1 TGTATCGATACATGGATCTGTGTATCGATACAT
*
75505 TGTATCGATACATGGATCTTTGTATCGATACAT
1 TGTATCGATACATGGATCTGTGTATCGATACAT
75538 T
1 T
75539 TGGAAATTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.25, C:0.15, G:0.16, T:0.43
Consensus pattern (33 bp):
TGTATCGATACATGGATCTGTGTATCGATACAT
Found at i:78064 original size:79 final size:80
Alignment explanation
Indices: 77922--78070 Score: 214
Period size: 79 Copynumber: 1.9 Consensus size: 80
77912 ATTTTCTATA
*
77922 ATCGGGGATACTCTAACTCCGATTTTATTTCCAAAAAACACCAATTTCTTCACAATCGGGGATAC
1 ATCGGGGATACTCCAACTCCGATTTTA-TTCCAAAAAACACCAATTTCTTCACAATCGGGGATAC
77987 TCCAACCCCGTTAATC
65 TCCAACCCCGTTAATC
* * *
78003 ATCGGGGATACTCCAACTCCGGTTTTA-TCGC-TAAAACACTAATTT-TTCCACAATCGGGGATA
1 ATCGGGGATACTCCAACTCCGATTTTATTC-CAAAAAACACCAATTTCTT-CACAATCGGGGATA
78065 CTCCAA
64 CTCCAA
78071 TCCTGGTTTT
Statistics
Matches: 62, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
78 2 0.03
79 34 0.55
80 1 0.02
81 25 0.40
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.28
Consensus pattern (80 bp):
ATCGGGGATACTCCAACTCCGATTTTATTCCAAAAAACACCAATTTCTTCACAATCGGGGATACT
CCAACCCCGTTAATC
Found at i:78081 original size:52 final size:52
Alignment explanation
Indices: 78003--78390 Score: 248
Period size: 52 Copynumber: 7.3 Consensus size: 52
77993 CCCGTTAATC
*
78003 ATCGGGGATACTCCAACTCCGGTTTTATCGCTAAAACACTAATTTTTCCACA
1 ATCGGGGATACTCCAACTCCGGTTTTATCGCTAAAACACCAATTTTTCCACA
** * **
78055 ATCGGGGATACTCCAA-TCCTGGTTTTAT-TTTCAAAACGCCAA-TTTTCCTTTA
1 ATCGGGGATACTCCAACTCC-GGTTTTATCGCT-AAAACACCAATTTTTCC-ACA
* *
78107 ATCGGGGATACTCCAACTCCGATTTTATTTC-CAAAAAACACCAATTTCTT-CACA
1 ATCGGGGATACTCCAACTCCGGTTTTA--TCGC-TAAAACACCAATTT-TTCCACA
* * *** * * **
78161 ATCGGGGATACTCCAAC-CCCGTTAATCATCGGGGATACTCCAACCCCGTTATTT-C-TG
1 ATCGGGGATACTCCAACTCCGGTT--TTATCGCTAAAACACCAA-----TT-TTTCCACA
*
78218 A--GGGGATACTCCAACTCCGGTTTTATCGCTAAAACACTAATTTTTCCACA
1 ATCGGGGATACTCCAACTCCGGTTTTATCGCTAAAACACCAATTTTTCCACA
** * **
78268 ATCGGGGATACTCCAA-TCCTGGTTTTAT-TTTCAAAACGCCAA-TTTTCCTTTA
1 ATCGGGGATACTCCAACTCC-GGTTTTATCGCT-AAAACACCAATTTTTCC-ACA
* *
78320 ATCGGGGATACTCCAACTCCGATTTTATTTC-CAAAAAACACCAATTTCTT-CACA
1 ATCGGGGATACTCCAACTCCGGTTTTA--TCGC-TAAAACACCAATTT-TTCCACA
78374 ATCGGGGATACTCCAAC
1 ATCGGGGATACTCCAAC
78391 CTCGTTAATC
Statistics
Matches: 258, Mismatches: 44, Indels: 66
0.70 0.12 0.18
Matches are distributed among these distances:
48 3 0.01
49 3 0.01
50 1 0.00
51 20 0.08
52 107 0.41
53 19 0.07
54 67 0.26
55 22 0.09
56 9 0.03
57 1 0.00
58 5 0.02
59 1 0.00
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.31
Consensus pattern (52 bp):
ATCGGGGATACTCCAACTCCGGTTTTATCGCTAAAACACCAATTTTTCCACA
Found at i:78204 original size:185 final size:184
Alignment explanation
Indices: 77865--78417 Score: 597
Period size: 213 Copynumber: 2.8 Consensus size: 184
77855 TTATCAATTC
* * *
77865 TCCATAATCGAGGATATTCCAACTCCGATTTTATTTTCAAAACACTAATTTTCTATAATCGGGGA
1 TCCACAATCGAGGATACTCCAACTCCGATTTTATTTTCAAAACACCAATTTTCTATAATCGGGGA
*
77930 TACTCTAACTCCGATTTTATTTCCAAAAAACACCAATTTCTTCACAATCGGGGATACTCCAACCC
66 TACTCCAACTCCGATTTTATTTCCAAAAAACACCAATTTCTTCACAATCGGGGATACTCCAACCC
77995 CGTTAATCATCGGGGATACTCCAACTCCGGTTTTATCGCTAAAACACTAATTTT
131 CGTTAATCATCGGGGATACTCCAACTCCGGTTTTATCGCTAAAACACTAATTTT
* * * *
78049 TCCACAATCGGGGATACTCCAA-TCCTGGTTTTATTTTCAAAACGCCAATTTTCCTTTAATCGGG
1 TCCACAATCGAGGATACTCCAACTCC-GATTTTATTTTCAAAACACCAATTTT-CTATAATCGGG
78113 GATACTCCAACTCCGATTTTATTTCCAAAAAACACCAATTTCTTCACAATCGGGGATACTCCAAC
64 GATACTCCAACTCCGATTTTATTTCCAAAAAACACCAATTTCTTCACAATCGGGGATACTCCAAC
* * ** ** * ***
78178 CCCGTTAATCATCGGGGATACTCCAACCCCGTTATTTCTGAGGGGATACTCCAACTCCGGTTTT
129 CCCGTTAATCATCGGGGATACTCCAACTCCG--GTTT-T-A-TCG---CTAAAACACTAATTTT
* * *
78242 ATCGCTAAAACACTAATTTTTCCACAATCGGGGATACTCCAA-TCCTGGTTTTATTTTCAAAACG
1 -T--C-----CAC--A-------A---TCGAGGATACTCCAACTCC-GATTTTATTTTCAAAACA
*
78306 CCAATTTTCCTTTAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAAAACACCAATTTCTTC
45 CCAATTTT-CTATAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAAAACACCAATTTCTTC
*
78371 ACAATCGGGGATACTCCAACCTCGTTAATCATCGGGGATACTCCAAC
109 ACAATCGGGGATACTCCAACCCCGTTAATCATCGGGGATACTCCAAC
78418 CCCGTTACTT
Statistics
Matches: 320, Mismatches: 19, Indels: 31
0.86 0.05 0.08
Matches are distributed among these distances:
183 3 0.01
184 42 0.13
185 104 0.32
187 3 0.01
188 1 0.00
189 1 0.00
190 1 0.00
193 10 0.03
194 1 0.00
196 1 0.00
201 3 0.01
203 1 0.00
210 1 0.00
213 148 0.46
ACGTcount: A:0.29, C:0.27, G:0.13, T:0.31
Consensus pattern (184 bp):
TCCACAATCGAGGATACTCCAACTCCGATTTTATTTTCAAAACACCAATTTTCTATAATCGGGGA
TACTCCAACTCCGATTTTATTTCCAAAAAACACCAATTTCTTCACAATCGGGGATACTCCAACCC
CGTTAATCATCGGGGATACTCCAACTCCGGTTTTATCGCTAAAACACTAATTTT
Found at i:78231 original size:28 final size:27
Alignment explanation
Indices: 78164--78232 Score: 95
Period size: 27 Copynumber: 2.5 Consensus size: 27
78154 CTTCACAATC
*
78164 GGGGATACTCCAACCCCGTTAATCATC
1 GGGGATACTCCAACCCCGTTAATCATA
*
78191 GGGGATACTCCAACCCCGTTATTTC-TGA
1 GGGGATACTCCAACCCCGTTA-ATCAT-A
78219 GGGGATACTCCAAC
1 GGGGATACTCCAAC
78233 TCCGGTTTTA
Statistics
Matches: 38, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.25, C:0.30, G:0.22, T:0.23
Consensus pattern (27 bp):
GGGGATACTCCAACCCCGTTAATCATA
Found at i:78342 original size:213 final size:212
Alignment explanation
Indices: 77976--78456 Score: 874
Period size: 213 Copynumber: 2.3 Consensus size: 212
77966 TTTCTTCACA
* *
77976 ATCGGGGATACTCCAACCCCGTTAATCAT-CGGGGATACTCCAACTCCGGTTTTATCGCTAAAAC
1 ATCGGGGATACTCCAACCCCGTTATTC-TGAGGGGATACTCCAACTCCGGTTTTATCGCTAAAAC
78040 ACTAATTTTTCCACAATCGGGGATACTCCAATCCTGGTTTTATTTTCAAAACGCCAATTTTCCTT
65 ACTAATTTTTCCACAATCGGGGATACTCCAATCCTGGTTTTATTTTCAAAACGCCAATTTTCCTT
78105 TAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAAAACACCAATTTCTTCACAATCGGGGAT
130 TAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAAAACACCAATTTCTTCACAATCGGGGAT
78170 ACTCCAACCCCGTTAATC
195 ACTCCAACCCCGTTAATC
78188 ATCGGGGATACTCCAACCCCGTTATTTCTGAGGGGATACTCCAACTCCGGTTTTATCGCTAAAAC
1 ATCGGGGATACTCCAACCCCGTTA-TTCTGAGGGGATACTCCAACTCCGGTTTTATCGCTAAAAC
78253 ACTAATTTTTCCACAATCGGGGATACTCCAATCCTGGTTTTATTTTCAAAACGCCAATTTTCCTT
65 ACTAATTTTTCCACAATCGGGGATACTCCAATCCTGGTTTTATTTTCAAAACGCCAATTTTCCTT
78318 TAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAAAACACCAATTTCTTCACAATCGGGGAT
130 TAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAAAACACCAATTTCTTCACAATCGGGGAT
*
78383 ACTCCAACCTCGTTAATC
195 ACTCCAACCCCGTTAATC
* * *
78401 ATCGGGGATACTCCAACCCCGTTACTTCCGAGGGGATACTCCAACCCCGGCTTTAT
1 ATCGGGGATACTCCAACCCCGTTA-TTCTGAGGGGATACTCCAACTCCGGTTTTAT
78457 TCCCAAAATA
Statistics
Matches: 260, Mismatches: 7, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
212 25 0.10
213 235 0.90
ACGTcount: A:0.27, C:0.28, G:0.15, T:0.30
Consensus pattern (212 bp):
ATCGGGGATACTCCAACCCCGTTATTCTGAGGGGATACTCCAACTCCGGTTTTATCGCTAAAACA
CTAATTTTTCCACAATCGGGGATACTCCAATCCTGGTTTTATTTTCAAAACGCCAATTTTCCTTT
AATCGGGGATACTCCAACTCCGATTTTATTTCCAAAAAACACCAATTTCTTCACAATCGGGGATA
CTCCAACCCCGTTAATC
Found at i:78377 original size:106 final size:104
Alignment explanation
Indices: 78003--78389 Score: 421
Period size: 106 Copynumber: 3.7 Consensus size: 104
77993 CCCGTTAATC
* * *
78003 ATCGGGGATACTCCAACTCCGGTTTTATCGCTAAAACACTAATTTTTCCACAATCGGGGATACTC
1 ATCGGGGATACTCCAACTCCGATTTTATCGCAAAAACACCAATTTTTCCACAATCGGGGATACTC
78068 CAATCCTGGTTTTATTTTCAAAACGCCAATTTTCCTTTA
66 CAATCCTGGTTTTATTTTCAAAACGCCAATTTTCCTTTA
78107 ATCGGGGATACTCCAACTCCGATTTTATTTC-CAAAAAACACCAATTTCTT-CACAATCGGGGAT
1 ATCGGGGATACTCCAACTCCGATTTTA--TCGC-AAAAACACCAATTT-TTCCACAATCGGGGAT
** * ** * * * ** *
78170 ACTCCAA-CCCCG-TTAATCATCGGGGATACTCCAA--CCCCGTTA
62 ACTCCAATCCTGGTTTTATTTTC---AAAACGCCAATTTTCCTTTA
* * * *
78212 TTTCTGAGGGGATACTCCAACTCCGGTTTTATCGCTAAAACACTAATTTTTCCACAATCGGGGAT
1 -ATC---GGGGATACTCCAACTCCGATTTTATCGCAAAAACACCAATTTTTCCACAATCGGGGAT
78277 ACTCCAATCCTGGTTTTATTTTCAAAACGCCAATTTTCCTTTA
62 ACTCCAATCCTGGTTTTATTTTCAAAACGCCAATTTTCCTTTA
78320 ATCGGGGATACTCCAACTCCGATTTTATTTC-CAAAAAACACCAATTTCTT-CACAATCGGGGAT
1 ATCGGGGATACTCCAACTCCGATTTTA--TCGC-AAAAACACCAATTT-TTCCACAATCGGGGAT
78383 ACTCCAA
62 ACTCCAA
78390 CCTCGTTAAT
Statistics
Matches: 229, Mismatches: 33, Indels: 40
0.76 0.11 0.13
Matches are distributed among these distances:
104 55 0.24
105 10 0.04
106 79 0.34
107 47 0.21
108 9 0.04
109 29 0.13
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.31
Consensus pattern (104 bp):
ATCGGGGATACTCCAACTCCGATTTTATCGCAAAAACACCAATTTTTCCACAATCGGGGATACTC
CAATCCTGGTTTTATTTTCAAAACGCCAATTTTCCTTTA
Found at i:78444 original size:28 final size:27
Alignment explanation
Indices: 78377--78449 Score: 92
Period size: 27 Copynumber: 2.7 Consensus size: 27
78367 CTTCACAATC
* **
78377 GGGGATACTCCAACCTCGTTAATCATC
1 GGGGATACTCCAACCCCGTTAATCAGA
* *
78404 GGGGATACTCCAACCCCGTTACTTCCGA
1 GGGGATACTCCAACCCCGTTA-ATCAGA
78432 GGGGATACTCCAACCCCG
1 GGGGATACTCCAACCCCG
78450 GCTTTATTCC
Statistics
Matches: 40, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
27 20 0.50
28 20 0.50
ACGTcount: A:0.23, C:0.34, G:0.22, T:0.21
Consensus pattern (27 bp):
GGGGATACTCCAACCCCGTTAATCAGA
Found at i:83190 original size:30 final size:31
Alignment explanation
Indices: 83154--83229 Score: 109
Period size: 31 Copynumber: 2.5 Consensus size: 31
83144 TACATTGAAA
*
83154 AATGTATCGATACATCTAGG-AAAAATACAG
1 AATGTATCGATACATCTAGGTAAAAAAACAG
* *
83184 AATGTATCAATACATCTAGGTAAAAAAATAG
1 AATGTATCGATACATCTAGGTAAAAAAACAG
*
83215 AATGTGTCGATACAT
1 AATGTATCGATACAT
83230 TGAAAAATGT
Statistics
Matches: 40, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
30 19 0.47
31 21 0.52
ACGTcount: A:0.46, C:0.12, G:0.16, T:0.26
Consensus pattern (31 bp):
AATGTATCGATACATCTAGGTAAAAAAACAG
Found at i:85393 original size:13 final size:13
Alignment explanation
Indices: 85375--85399 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
85365 ATATTGCTTA
85375 GTATCGATACATT
1 GTATCGATACATT
85388 GTATCGATACAT
1 GTATCGATACAT
85400 GTTCTTGGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
GTATCGATACATT
Found at i:85519 original size:20 final size:20
Alignment explanation
Indices: 85478--85528 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 20
85468 ATCAATACAA
*
85478 TGTATCGATACAGGATGAAT
1 TGTATCGATACAAGATGAAT
*
85498 TGTATCGATACATAG-TGCAT
1 TGTATCGATACA-AGATGAAT
*
85518 TGAATCGATAC
1 TGTATCGATAC
85529 GTTGAGCTCA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
20 26 0.96
21 1 0.04
ACGTcount: A:0.33, C:0.14, G:0.22, T:0.31
Consensus pattern (20 bp):
TGTATCGATACAAGATGAAT
Found at i:88533 original size:14 final size:15
Alignment explanation
Indices: 88514--88542 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
88504 ATATCTCAGC
88514 CAAAAACA-TCAACA
1 CAAAAACACTCAACA
88528 CAAAAACACTCAACA
1 CAAAAACACTCAACA
88543 AAGATCCATT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.62, C:0.31, G:0.00, T:0.07
Consensus pattern (15 bp):
CAAAAACACTCAACA
Found at i:94475 original size:18 final size:19
Alignment explanation
Indices: 94452--94489 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
94442 GGAGATGCAA
*
94452 GATAGACAAA-AAGAAAAG
1 GATAGACAAAGAACAAAAG
*
94470 GATAGAGAAAGAACAAAAG
1 GATAGACAAAGAACAAAAG
94489 G
1 G
94490 TAAGCATAGA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 9 0.53
19 8 0.47
ACGTcount: A:0.63, C:0.05, G:0.26, T:0.05
Consensus pattern (19 bp):
GATAGACAAAGAACAAAAG
Found at i:96954 original size:26 final size:25
Alignment explanation
Indices: 96900--96956 Score: 62
Period size: 24 Copynumber: 2.2 Consensus size: 25
96890 CCCTCTCCAT
*
96900 TTCATCTTTAACTTTTTTATCTCAT
1 TTCATCTTTAACTTTTTTATCTCAA
* *
96925 TTCATCTTT-AGTTTTTTCTCTACAAA
1 TTCATCTTTAACTTTTTTATCT-C-AA
96951 TTCATC
1 TTCATC
96957 AAAACCGGCA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
24 10 0.37
25 10 0.37
26 7 0.26
ACGTcount: A:0.21, C:0.21, G:0.02, T:0.56
Consensus pattern (25 bp):
TTCATCTTTAACTTTTTTATCTCAA
Found at i:100778 original size:19 final size:19
Alignment explanation
Indices: 100737--100790 Score: 72
Period size: 19 Copynumber: 2.8 Consensus size: 19
100727 ACCAGTTTCC
* * *
100737 TGTATTGATGCAATTGAGTA
1 TGTATCGATACAA-TGAGCA
100757 TGTATCGATACAATGAGCA
1 TGTATCGATACAATGAGCA
100776 TGTATCGATACAATG
1 TGTATCGATACAATG
100791 TATCGATATA
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
19 20 0.65
20 11 0.35
ACGTcount: A:0.33, C:0.11, G:0.22, T:0.33
Consensus pattern (19 bp):
TGTATCGATACAATGAGCA
Found at i:101436 original size:21 final size:21
Alignment explanation
Indices: 101406--101454 Score: 80
Period size: 21 Copynumber: 2.3 Consensus size: 21
101396 GTAAATTTTC
*
101406 AATAAATCTCCCCCTTAATAA
1 AATAATTCTCCCCCTTAATAA
*
101427 AATAATTCTCCCCCTTGATAA
1 AATAATTCTCCCCCTTAATAA
101448 AATAATT
1 AATAATT
101455 AAAGCTCTTC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.41, C:0.24, G:0.02, T:0.33
Consensus pattern (21 bp):
AATAATTCTCCCCCTTAATAA
Found at i:103403 original size:23 final size:23
Alignment explanation
Indices: 103373--103420 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
103363 AAAGGCTAGA
103373 ATAGTTCTAAATAGTAACCTTGT
1 ATAGTTCTAAATAGTAACCTTGT
103396 ATAGTTCTAAATAGTAACCTTGT
1 ATAGTTCTAAATAGTAACCTTGT
103419 AT
1 AT
103421 CGATACTTAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.35, C:0.12, G:0.12, T:0.40
Consensus pattern (23 bp):
ATAGTTCTAAATAGTAACCTTGT
Found at i:111091 original size:52 final size:52
Alignment explanation
Indices: 111006--111130 Score: 232
Period size: 52 Copynumber: 2.4 Consensus size: 52
110996 ATATGAAAAG
* *
111006 TTGCTTGCATGTATCGATACATTTTATAGTGTATCGATACATCTGGGCAAAT
1 TTGCCTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAAT
111058 TTGCCTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAAT
1 TTGCCTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAAT
111110 TTGCCTGCATGTATCGATACA
1 TTGCCTGCATGTATCGATACA
111131 AAGATCAATG
Statistics
Matches: 71, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
52 71 1.00
ACGTcount: A:0.27, C:0.18, G:0.18, T:0.37
Consensus pattern (52 bp):
TTGCCTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAAT
Found at i:111141 original size:52 final size:52
Alignment explanation
Indices: 111006--111150 Score: 202
Period size: 52 Copynumber: 2.8 Consensus size: 52
110996 ATATGAAAAG
* *** *
111006 TTGCTTGCATGTATCGATACATTTTATAGTGTATCGATACATCTGGGCAAAT
1 TTGCCTGCATGTATCGATACATAAGATAATGTATCGATACATCTGGGCAAAT
***
111058 TTGCCTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAAT
1 TTGCCTGCATGTATCGATACATAAGATAATGTATCGATACATCTGGGCAAAT
111110 TTGCCTGCATGTATCGATACA-AAGATCAATGTATCGATACA
1 TTGCCTGCATGTATCGATACATAAGAT-AATGTATCGATACA
111151 ATGTATCGAT
Statistics
Matches: 87, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
51 2 0.02
52 85 0.98
ACGTcount: A:0.30, C:0.17, G:0.18, T:0.35
Consensus pattern (52 bp):
TTGCCTGCATGTATCGATACATAAGATAATGTATCGATACATCTGGGCAAAT
Found at i:111154 original size:13 final size:13
Alignment explanation
Indices: 111136--111163 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
111126 ATACAAAGAT
111136 CAATGTATCGATA
1 CAATGTATCGATA
111149 CAATGTATCGATA
1 CAATGTATCGATA
111162 CA
1 CA
111164 TTTGAGTAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.39, C:0.18, G:0.14, T:0.29
Consensus pattern (13 bp):
CAATGTATCGATA
Found at i:111243 original size:33 final size:33
Alignment explanation
Indices: 111206--111270 Score: 94
Period size: 33 Copynumber: 2.0 Consensus size: 33
111196 TAGCTTAAAG
111206 TGTATCGATACAAAAAAATATGTATCGATACAT
1 TGTATCGATACAAAAAAATATGTATCGATACAT
* ***
111239 TGTATCGATACAACACTTTATGTATCGATACA
1 TGTATCGATACAAAAAAATATGTATCGATACA
111271 AATCGTTGAA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 28 1.00
ACGTcount: A:0.40, C:0.15, G:0.12, T:0.32
Consensus pattern (33 bp):
TGTATCGATACAAAAAAATATGTATCGATACAT
Found at i:111244 original size:13 final size:13
Alignment explanation
Indices: 111226--111250 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
111216 CAAAAAAATA
111226 TGTATCGATACAT
1 TGTATCGATACAT
111239 TGTATCGATACA
1 TGTATCGATACA
111251 ACACTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:112410 original size:34 final size:35
Alignment explanation
Indices: 112372--112438 Score: 102
Period size: 37 Copynumber: 1.9 Consensus size: 35
112362 CCTTACAACA
112372 CTATC-TTTC-AAGGCTAAGATAGAAACCTCTCTCT
1 CTATCTTTTCAAAGGCTAAGATAG-AACCTCTCTCT
112406 CTATCTTTTTCAAAGGCTAAGATAGAACCTCTC
1 CTATC-TTTTCAAAGGCTAAGATAGAACCTCTC
112439 AATCACTTAG
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
34 5 0.17
36 12 0.40
37 13 0.43
ACGTcount: A:0.30, C:0.25, G:0.12, T:0.33
Consensus pattern (35 bp):
CTATCTTTTCAAAGGCTAAGATAGAACCTCTCTCT
Found at i:112913 original size:13 final size:13
Alignment explanation
Indices: 112895--112920 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
112885 CAATTTTTTG
112895 TGTATCGATACAT
1 TGTATCGATACAT
112908 TGTATCGATACAT
1 TGTATCGATACAT
112921 ACTTTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:112932 original size:32 final size:33
Alignment explanation
Indices: 112875--112938 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 33
112865 TACAAGCCAA
**
112875 TGTATCGATACAATTTTTTGTGTATCGATACAT
1 TGTATCGATACAATACTTTGTGTATCGATACAT
112908 TGTATCGATAC-ATACTTTGTGTATCGATACA
1 TGTATCGATACAATACTTTGTGTATCGATACA
112939 AGTTTGGCTA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 18 0.62
33 11 0.38
ACGTcount: A:0.28, C:0.14, G:0.16, T:0.42
Consensus pattern (33 bp):
TGTATCGATACAATACTTTGTGTATCGATACAT
Found at i:115899 original size:84 final size:84
Alignment explanation
Indices: 115744--115908 Score: 201
Period size: 84 Copynumber: 2.0 Consensus size: 84
115734 CATTTTCCAC
* * * *
115744 TTGCAACTCATTTCTTTTCTCCTCTAATTCATTTATTTTCTTTTTAAAAGAATTATTTTCTAAAC
1 TTGCAACTCATTTCTATTCTCCTCTAATTCACTTAATTTCTTTTTAAAAGAATTATTCTCTAAAC
115809 TCATTGATTTACTTTCATT
66 TCATTGATTTACTTTCATT
* *
115828 TTGCAACTC-TTTCATATTCTTCTCTAATTCACTTAATTTC-TTTT-CAAGAATATCATTCTCTA
1 TTGCAACTCATTTC-TATTCTCCTCTAATTCACTTAATTTCTTTTTAAAAGAAT-T-ATTCTCTA
* * *
115890 CACTTATTGATTTATTTTC
63 AACTCATTGATTTACTTTC
115909 TTCTTTGAGT
Statistics
Matches: 69, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
82 6 0.09
83 9 0.13
84 54 0.78
ACGTcount: A:0.25, C:0.19, G:0.04, T:0.52
Consensus pattern (84 bp):
TTGCAACTCATTTCTATTCTCCTCTAATTCACTTAATTTCTTTTTAAAAGAATTATTCTCTAAAC
TCATTGATTTACTTTCATT
Found at i:117472 original size:34 final size:35
Alignment explanation
Indices: 117434--117500 Score: 102
Period size: 37 Copynumber: 1.9 Consensus size: 35
117424 CCTTACAACA
117434 CTATC-TTTC-AAGGCTAAGATAGAAACCTCTCTCT
1 CTATCTTTTCAAAGGCTAAGATAG-AACCTCTCTCT
117468 CTATCTTTTTCAAAGGCTAAGATAGAACCTCTC
1 CTATC-TTTTCAAAGGCTAAGATAGAACCTCTC
117501 AATCACTAAG
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
34 5 0.17
36 12 0.40
37 13 0.43
ACGTcount: A:0.30, C:0.25, G:0.12, T:0.33
Consensus pattern (35 bp):
CTATCTTTTCAAAGGCTAAGATAGAACCTCTCTCT
Found at i:117976 original size:13 final size:13
Alignment explanation
Indices: 117958--117983 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
117948 CAATTTTTTG
117958 TGTATCGATACAT
1 TGTATCGATACAT
117971 TGTATCGATACAT
1 TGTATCGATACAT
117984 ACTTTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:118480 original size:55 final size:52
Alignment explanation
Indices: 118402--119051 Score: 389
Period size: 49 Copynumber: 12.8 Consensus size: 52
118392 GTGATAAAAA
* * * * * *
118402 TGCCAATATGTTGATTCATGGCCAACGATATTGGGCTTAAAGATGAGAAAAAGG
1 TGCCAACATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATG-G-AAAAGG
* * * *
118456 ATGTCAACGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAAGG
1 -TGCCAACATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGGAAAAGG
*
118509 TGCCAATATGCTGATTCAAGGCCAGCTATATTGGAC-T-----T---AAAGG
1 TGCCAACATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGGAAAAGG
** * * *
118552 TGCCAATGTGCTGATTCAAGGCCAGCTACACTGGACTTAAAGGT-G---AGG
1 TGCCAACATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGGAAAAGG
** *
118600 TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT-G--AAGG
1 TGCCAACATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGGAAAAGG
** * * *
118649 TGCCAATGTGCTGGTTCAAGGCCAGCAATATTGGACTTAAAGATGAAGATGAGAAAAG
1 TGCCAACATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGAT---G--GA-AAAGG
** * * * * *
118707 TGATAAAGATGCTAATATGTTGATTCACGGCCAACGATATTGGGCTTAAAGATGAGAAAAAGG
1 TG--CCA-A--C----ATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATG-G-AAAAGG
* ** * *
118770 ATGTCAATGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAAGG
1 -TGCCAACATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGGAAAAGG
*
118823 TGCCAATATGCTGATTCAAGGCCAGCTATATTGGAC-T-----T---AAAGG
1 TGCCAACATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGGAAAAGG
** * * *
118866 TGCCAATGTGCTGATTCAAGGCCAGCTACACTGGACTTAAAGGT-G---AGG
1 TGCCAACATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGGAAAAGG
** *
118914 TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT-G--AAGG
1 TGCCAACATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGGAAAAGG
* * ** * * *
118963 TACTAATGTGCTGAGTCAAGGCCAGCTACATTGGTCTTAAAGAT--AAAA-G
1 TGCCAACATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGGAAAAGG
*
119012 TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAA
1 TGCCAACATGCTGATTCAAGGCCAGCTATATTGGACTTAA
119052 TGGTGCCAAT
Statistics
Matches: 491, Mismatches: 66, Indels: 82
0.77 0.10 0.13
Matches are distributed among these distances:
43 76 0.15
44 2 0.00
46 2 0.00
48 92 0.19
49 124 0.25
50 2 0.00
51 2 0.00
52 63 0.13
53 12 0.02
54 2 0.00
55 66 0.13
58 5 0.01
60 1 0.00
61 2 0.00
62 1 0.00
63 5 0.01
64 4 0.01
67 30 0.06
ACGTcount: A:0.33, C:0.17, G:0.25, T:0.25
Consensus pattern (52 bp):
TGCCAACATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGGAAAAGG
Found at i:118565 original size:43 final size:43
Alignment explanation
Indices: 118504--119098 Score: 303
Period size: 43 Copynumber: 13.1 Consensus size: 43
118494 TAAAGATGGA
* *
118504 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT
*
118547 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACACTGGACTT
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT
118590 AAAGGTGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT
1 -AA----AGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT
* * *
118638 AAAGATGAAGGTGCCAATGTGCTGGTTCAAGGCCAGCAATATTGGACTT
1 ----A--AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT
* * * * *
118687 AAAGATG-AAGATGAGAAAAGTGA-T-AAAG--ATGCTA-ATATGTTGA-TT
1 AAAGGTGCCA-ATGTG----CTGATTCAAGGCCA-GCTACAT-TG--GACTT
* * * * * * *
118732 -CACG-GCCAA--CGAT-ATT---GG---GCTTAAAGATGAGA--A
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGC-TACA-TTG-GACTT
* *
118765 AAAGGATGTCAATGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGAT
1 AAAGG-TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGAC-T-----T
* *
118815 GGAAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
1 ---AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT
*
118861 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACACTGGACTT
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT
118904 AAAGGTGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT
1 -AA----AGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT
* * * *
118952 AAAGATGAAGGTACTAATGTGCTGAGTCAAGGCCAGCTACATTGGTCTT
1 ----A--AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT
* *
119001 AAAGATAAAAGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
1 AAAG------GTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT
* * *
119050 AATGGTGCCAATGTGCTGAGTCAAGGCCAGGTACATTGGACTT
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT
119093 AGAAGG
1 A-AAGG
119099 GTTGCCACCA
Statistics
Matches: 429, Mismatches: 59, Indels: 127
0.70 0.10 0.21
Matches are distributed among these distances:
33 2 0.00
34 6 0.01
35 4 0.01
36 5 0.01
37 2 0.00
38 2 0.00
39 3 0.01
41 1 0.00
42 4 0.01
43 135 0.31
44 17 0.04
45 9 0.02
46 4 0.01
47 2 0.00
48 80 0.19
49 111 0.26
51 3 0.01
52 32 0.07
53 7 0.02
ACGTcount: A:0.32, C:0.17, G:0.26, T:0.25
Consensus pattern (43 bp):
AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT
Found at i:118633 original size:91 final size:95
Alignment explanation
Indices: 118464--118693 Score: 306
Period size: 97 Copynumber: 2.4 Consensus size: 95
118454 GGATGTCAAC
*
118464 GTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAAGGTGCCAATATGCTGATTCAAG
1 GTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGG--AAGGTGCCAATATGCTGATTCAAG
*
118529 GCCAGCTATATTGGACTT-A-AAGGTGCCAAT
64 GCCAGCTACATTGGACTTAAGAAGGTGCCAAT
* * *
118559 GTGCTGATTCAAGGCCAGCTACACTGGACTTAAAGGT-G-AGGTGCCAATGTGCTGATTCAAGGC
1 GTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGGAAGGTGCCAATATGCTGATTCAAGGC
118622 CAGCTACATTGGACTTAAAGATGAAGGTGCCAAT
66 CAGCTACATTGGACTT--A-A-GAAGGTGCCAAT
* * *
118656 GTGCTGGTTCAAGGCCAGCAATATTGGACTTAAAGATG
1 GTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATG
118694 AAGATGAGAA
Statistics
Matches: 118, Mismatches: 10, Indels: 11
0.85 0.07 0.08
Matches are distributed among these distances:
91 39 0.33
94 1 0.01
95 35 0.30
97 43 0.36
ACGTcount: A:0.30, C:0.18, G:0.27, T:0.25
Consensus pattern (95 bp):
GTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGGAAGGTGCCAATATGCTGATTCAAGGC
CAGCTACATTGGACTTAAGAAGGTGCCAAT
Found at i:118951 original size:314 final size:314
Alignment explanation
Indices: 118377--119006 Score: 1145
Period size: 314 Copynumber: 2.0 Consensus size: 314
118367 GATCCTAACA
* * *
118377 ATGATGATGAGATAAGTGATAAAAATGCCAATATGTTGATTCATGGCCAACGATATTGGGCTTAA
1 ATGAAGATGAGAAAAGTGATAAAAATGCCAATATGTTGATTCACGGCCAACGATATTGGGCTTAA
118442 AGATGAGAAAAAGGATGTCAACGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAA
66 AGATGAGAAAAAGGATGTCAACGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAA
118507 GGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAG
131 GGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAG
118572 GCCAGCTACACTGGACTTAAAGGTGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACT
196 GCCAGCTACACTGGACTTAAAGGTGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACT
* *
118637 TAAAGATGAAGGTGCCAATGTGCTG-GTTCAAGGCCAGCAATATTGGACTTAAAG
261 TAAAGATGAAGGTACCAATGTGCTGAG-TCAAGGCCAGCAACATTGGACTTAAAG
* *
118691 ATGAAGATGAGAAAAGTGATAAAGATGCTAATATGTTGATTCACGGCCAACGATATTGGGCTTAA
1 ATGAAGATGAGAAAAGTGATAAAAATGCCAATATGTTGATTCACGGCCAACGATATTGGGCTTAA
*
118756 AGATGAGAAAAAGGATGTCAATGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAA
66 AGATGAGAAAAAGGATGTCAACGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAA
118821 GGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAG
131 GGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAG
118886 GCCAGCTACACTGGACTTAAAGGTGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACT
196 GCCAGCTACACTGGACTTAAAGGTGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACT
* * *
118951 TAAAGATGAAGGTACTAATGTGCTGAGTCAAGGCCAGCTACATTGGTCTTAAAG
261 TAAAGATGAAGGTACCAATGTGCTGAGTCAAGGCCAGCAACATTGGACTTAAAG
119005 AT
1 AT
119007 AAAAGTGCCA
Statistics
Matches: 304, Mismatches: 11, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
314 303 1.00
315 1 0.00
ACGTcount: A:0.33, C:0.16, G:0.26, T:0.25
Consensus pattern (314 bp):
ATGAAGATGAGAAAAGTGATAAAAATGCCAATATGTTGATTCACGGCCAACGATATTGGGCTTAA
AGATGAGAAAAAGGATGTCAACGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAA
GGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAG
GCCAGCTACACTGGACTTAAAGGTGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACT
TAAAGATGAAGGTACCAATGTGCTGAGTCAAGGCCAGCAACATTGGACTTAAAG
Found at i:118990 original size:49 final size:49
Alignment explanation
Indices: 118774--119093 Score: 387
Period size: 49 Copynumber: 6.7 Consensus size: 49
118764 AAAAGGATGT
*
118774 CAATGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT-G--AAGGTGC
* *
118826 CAATATGCTGATTCAAGGCCAGCTATATTGGACTT----A--AAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* *
118869 CAATGTGCTGATTCAAGGCCAGCTACACTGGACTTAAAGGTG-AGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
*
118917 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTAC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* * * * *
118966 TAATGTGCTGAGTCAAGGCCAGCTACATTGGTCTTAAAGATAAAAGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* *
119015 CAATATGCTGATTCAAGGCCAGCTATATTGGACTT--A-AT---GGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* *
119058 CAATGTGCTGAGTCAAGGCCAGGTACATTGGACTTA
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTA
119094 GAAGGGTTGC
Statistics
Matches: 234, Mismatches: 26, Indels: 24
0.82 0.09 0.08
Matches are distributed among these distances:
43 74 0.32
46 2 0.01
47 1 0.00
48 47 0.20
49 78 0.33
52 32 0.14
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.26
Consensus pattern (49 bp):
CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
Found at i:119135 original size:33 final size:32
Alignment explanation
Indices: 119093--119204 Score: 145
Period size: 33 Copynumber: 3.4 Consensus size: 32
119083 CATTGGACTT
*
119093 AGAAGGGTTGCCACCAACTTGTGTGGGCTTTAG
1 AGAA-GGTTGCCACCGACTTGTGTGGGCTTTAG
** *
119126 AGTGTGGTTGCCACCGACTTGTGTGGGCTTTGG
1 AG-AAGGTTGCCACCGACTTGTGTGGGCTTTAG
119159 AAGAAGGTTGCCACCGACTTGTGTGGGCTTTAG
1 -AGAAGGTTGCCACCGACTTGTGTGGGCTTTAG
119192 AAGAAGG-TGCCAC
1 -AGAAGGTTGCCAC
119205 GGAGTCGTGG
Statistics
Matches: 70, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
32 6 0.09
33 62 0.89
34 2 0.03
ACGTcount: A:0.20, C:0.19, G:0.35, T:0.27
Consensus pattern (32 bp):
AGAAGGTTGCCACCGACTTGTGTGGGCTTTAG
Found at i:119271 original size:35 final size:34
Alignment explanation
Indices: 119197--119445 Score: 181
Period size: 27 Copynumber: 7.6 Consensus size: 34
119187 TTTAGAAGAA
* * *
119197 GGTGCCACGGAGTCGTGGACTTAAAAGG-AAAAG
1 GGTGCCACGGAGTTGTGGGCTTTAAAGGAAAAAG
* *
119230 AGTGCCACGTAGTTGTGGGCTTTAAAGGAAAAAAG
1 GGTGCCACGGAGTTGTGGGCTTTAAAGG-AAAAAG
* *
119265 GGTGCCACGGAGTCGTGGAC-TT------AAAAG
1 GGTGCCACGGAGTTGTGGGCTTTAAAGGAAAAAG
* *
119292 GGTGCCACGGAGTTGTGGG-GTT------AAACG
1 GGTGCCACGGAGTTGTGGGCTTTAAAGGAAAAAG
*
119319 GGTGCCACGGAGTTGTGGAC-TTAGAAGGAAAAAG
1 GGTGCCACGGAGTTGTGGGCTTTA-AAGGAAAAAG
**
119353 AATGCCACGGAGTTGTGGGCTTTAAAAAGGAAAAAG
1 GGTGCCACGGAGTTGTGGGCTTT--AAAGGAAAAAG
* *
119389 AGTGCCACGTAGTTGTGGGCTTTAAAAAGGAAAAA-
1 GGTGCCACGGAGTTGTGGGCTTT--AAAGGAAAAAG
* *
119424 GATGCCATGGAGTTGTGGGCTT
1 GGTGCCACGGAGTTGTGGGCTT
119446 AAAATGGTGC
Statistics
Matches: 179, Mismatches: 23, Indels: 26
0.79 0.10 0.11
Matches are distributed among these distances:
27 48 0.27
33 23 0.13
34 23 0.13
35 41 0.23
36 43 0.24
37 1 0.01
ACGTcount: A:0.31, C:0.13, G:0.35, T:0.21
Consensus pattern (34 bp):
GGTGCCACGGAGTTGTGGGCTTTAAAGGAAAAAG
Found at i:119364 original size:34 final size:36
Alignment explanation
Indices: 119321--119449 Score: 185
Period size: 36 Copynumber: 3.7 Consensus size: 36
119311 GTTAAACGGG
* *
119321 TGCCACGGAGTTGTGGAC-TT-AGAAGGAAAAAGAA
1 TGCCACGGAGTTGTGGGCTTTAAAAAGGAAAAAGAA
*
119355 TGCCACGGAGTTGTGGGCTTTAAAAAGGAAAAAGAG
1 TGCCACGGAGTTGTGGGCTTTAAAAAGGAAAAAGAA
*
119391 TGCCACGTAGTTGTGGGCTTTAAAAAGGAAAAAG-A
1 TGCCACGGAGTTGTGGGCTTTAAAAAGGAAAAAGAA
*
119426 TGCCATGGAGTTGTGGGC-TTAAAA
1 TGCCACGGAGTTGTGGGCTTTAAAA
119450 TGGTGCCATA
Statistics
Matches: 86, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
34 23 0.27
35 18 0.21
36 45 0.52
ACGTcount: A:0.35, C:0.12, G:0.32, T:0.22
Consensus pattern (36 bp):
TGCCACGGAGTTGTGGGCTTTAAAAAGGAAAAAGAA
Found at i:119592 original size:31 final size:32
Alignment explanation
Indices: 119474--119618 Score: 110
Period size: 31 Copynumber: 4.8 Consensus size: 32
119464 CGTGGACTTT
*
119474 GATGCCACTG-AGTTGTGGAC-TTAA-AAGG-
1 GATGCCACTGAAGTCGTGGACTTTAAGAAGGA
* * * **
119502 GATGCCACTGAA-TTGTGGACTTTTAGGACAA
1 GATGCCACTGAAGTCGTGGACTTTAAGAAGGA
* * * * *
119533 AATGCCATTG-AGTCATGGGCTTTGAGAA-GA
1 GATGCCACTGAAGTCGTGGACTTTAAGAAGGA
119563 GATTGCCACT-AAGTCGTGGACTTTAAGAAGGA
1 GA-TGCCACTGAAGTCGTGGACTTTAAGAAGGA
*
119595 GATGCCACTGAA-TTGTGGACTTTA
1 GATGCCACTGAAGTCGTGGACTTTA
119619 GGACAAAATG
Statistics
Matches: 90, Mismatches: 18, Indels: 15
0.73 0.15 0.12
Matches are distributed among these distances:
28 18 0.20
29 4 0.04
30 4 0.04
31 58 0.64
32 6 0.07
ACGTcount: A:0.29, C:0.15, G:0.28, T:0.28
Consensus pattern (32 bp):
GATGCCACTGAAGTCGTGGACTTTAAGAAGGA
Found at i:119645 original size:92 final size:93
Alignment explanation
Indices: 119476--119681 Score: 285
Period size: 92 Copynumber: 2.2 Consensus size: 93
119466 TGGACTTTGA
*
119476 TGCCACTGAGTTGTGGAC-TTAAAAGGGATGCCACTGAATTGTGGACTTTTAGGACAAAATGCCA
1 TGCCACTGAGTCGTGGACTTTAAAAGGGATGCCACTGAATTGTGGACTTTTAGGACAAAATGCCA
* * * *
119540 TTGAGTCATGGGCTTTGAGAAG-AGA-T
66 TTGAGTCACGGGCTTTAAGAAGAAAAGG
*
119566 TGCCACTAAGTCGTGGACTTTAAGAAGGAGATGCCACTGAATTGTGGAC-TTTAGGACAAAATGC
1 TGCCACTGAGTCGTGGACTTTAA-AAGG-GATGCCACTGAATTGTGGACTTTTAGGACAAAATGC
**
119630 CATTGAGTTGCGGGCTTTAAGAAGAAAAGG
64 CATTGAGTCACGGGCTTTAAGAAGAAAAGG
*
119660 TGCCACGGAGTCGTGGACTTTA
1 TGCCACTGAGTCGTGGACTTTA
119682 GGACAAAATG
Statistics
Matches: 101, Mismatches: 10, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
90 16 0.16
91 4 0.04
92 39 0.39
93 22 0.22
94 20 0.20
ACGTcount: A:0.29, C:0.16, G:0.29, T:0.26
Consensus pattern (93 bp):
TGCCACTGAGTCGTGGACTTTAAAAGGGATGCCACTGAATTGTGGACTTTTAGGACAAAATGCCA
TTGAGTCACGGGCTTTAAGAAGAAAAGG
Found at i:119648 original size:30 final size:30
Alignment explanation
Indices: 119503--119759 Score: 135
Period size: 31 Copynumber: 8.3 Consensus size: 30
119493 CTTAAAAGGG
*
119503 ATGCCACTGAATTGTGGACTTTTAGGACAAA
1 ATGCCACTGAGTTGTGGAC-TTTAGGACAAA
* ** * * * *
119534 ATGCCATTGAGTCATGGGCTTTGAGAAGAGA
1 ATGCCACTGAGTTGTGGACTTT-AGGACAAA
* * * * *
119565 TTGCCACTAAGTCGTGGACTTTAAGA-AGGAG
1 ATGCCACTGAGTTGTGGACTTTAGGACA--AA
*
119596 ATGCCACTGAATTGTGGACTTTAGGACAAA
1 ATGCCACTGAGTTGTGGACTTTAGGACAAA
* * * * *
119626 ATGCCATTGAGTTGCGGGCTTTAAGAAGAAA
1 ATGCCACTGAGTTGTGGACTTT-AGGACAAA
* *
119657 AGGTGCCACGGAGTCGTGGACTTTAGGACAAA
1 A--TGCCACTGAGTTGTGGACTTTAGGACAAA
* *
119689 ATGCCACTGA-TTCGTGGGCTTTGAAGA-AAA
1 ATGCCACTGAGTT-GTGGACTTT-AGGACAAA
* **
119719 GGATGCCACTAAGTCATGGACTTT-GAGACAAA
1 --ATGCCACTGAGTTGTGGACTTTAG-GACAAA
*
119751 ATGCTACTG
1 ATGCCACTG
119760 GGCTTTGAGA
Statistics
Matches: 165, Mismatches: 47, Indels: 29
0.68 0.20 0.12
Matches are distributed among these distances:
29 2 0.01
30 50 0.30
31 69 0.42
32 27 0.16
33 17 0.10
ACGTcount: A:0.31, C:0.16, G:0.28, T:0.25
Consensus pattern (30 bp):
ATGCCACTGAGTTGTGGACTTTAGGACAAA
Found at i:119680 original size:63 final size:62
Alignment explanation
Indices: 119595--119759 Score: 194
Period size: 63 Copynumber: 2.6 Consensus size: 62
119585 TTAAGAAGGA
* *
119595 GATGCCACTGAA-TTGTGGACTTTAGGACAAAATGCCATTGAGTT-GCGGGCTTTAAGAAGAAAA
1 GATGCCAC-GAAGTCGTGGACTTTAGGACAAAATGCCACTGA-TTCGCGGGCTTT--GAAGAAAA
119658 G
62 G
* *
119659 G-TGCCACGGAGTCGTGGACTTTAGGACAAAATGCCACTGATTCGTGGGCTTTGAAGAAAAG
1 GATGCCACGAAGTCGTGGACTTTAGGACAAAATGCCACTGATTCGCGGGCTTTGAAGAAAAG
* * *
119720 GATGCCACTAAGTCATGGACTTT-GAGACAAAATGCTACTG
1 GATGCCACGAAGTCGTGGACTTTAG-GACAAAATGCCACTG
119760 GGCTTTGAGA
Statistics
Matches: 89, Mismatches: 8, Indels: 10
0.83 0.07 0.09
Matches are distributed among these distances:
61 11 0.12
62 36 0.40
63 41 0.46
64 1 0.01
ACGTcount: A:0.31, C:0.17, G:0.28, T:0.24
Consensus pattern (62 bp):
GATGCCACGAAGTCGTGGACTTTAGGACAAAATGCCACTGATTCGCGGGCTTTGAAGAAAAG
Found at i:122050 original size:19 final size:20
Alignment explanation
Indices: 122010--122052 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
122000 CTAGTTTCAA
* *
122010 GTATCGATACAATTGAGTAT
1 GTATCAATACAATTGAGCAT
122030 GTATCAATACAA-TGAGCAT
1 GTATCAATACAATTGAGCAT
122049 GTAT
1 GTAT
122053 TGATAGAAAG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 10 0.48
20 11 0.52
ACGTcount: A:0.37, C:0.12, G:0.19, T:0.33
Consensus pattern (20 bp):
GTATCAATACAATTGAGCAT
Found at i:122714 original size:21 final size:21
Alignment explanation
Indices: 122690--122731 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
122680 TTCAATAAAA
122690 CTCCCCCTTAATAAAATAATT
1 CTCCCCCTTAATAAAATAATT
* *
122711 CTCCTCCTTGATAAAATAATT
1 CTCCCCCTTAATAAAATAATT
122732 AAAGCTCTTC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.36, C:0.26, G:0.02, T:0.36
Consensus pattern (21 bp):
CTCCCCCTTAATAAAATAATT
Found at i:126225 original size:20 final size:20
Alignment explanation
Indices: 126179--126226 Score: 53
Period size: 20 Copynumber: 2.4 Consensus size: 20
126169 GGATTGAAAT
*
126179 ATTTGAAAAATTATAATTTA
1 ATTTTAAAAATTATAATTTA
*
126199 ATCTTTAAAAATT-TAATTATC
1 AT-TTTAAAAATTATAATT-TA
126220 ATTTTAA
1 ATTTTAA
126227 CGAGAATTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
20 12 0.50
21 12 0.50
ACGTcount: A:0.46, C:0.04, G:0.02, T:0.48
Consensus pattern (20 bp):
ATTTTAAAAATTATAATTTA
Found at i:132321 original size:3 final size:3
Alignment explanation
Indices: 132313--132337 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
132303 TCTGAGTCAC
132313 CAT CAT CAT CAT CAT CAT CAT CAT C
1 CAT CAT CAT CAT CAT CAT CAT CAT C
132338 TTCTTCTTCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.36, G:0.00, T:0.32
Consensus pattern (3 bp):
CAT
Found at i:132580 original size:61 final size:61
Alignment explanation
Indices: 132505--132629 Score: 250
Period size: 61 Copynumber: 2.0 Consensus size: 61
132495 GTGACTTTGG
132505 CTTCCTATGATTTTGGAAGACTGTTGAGAAGCTTCTTCACCATCTCCTTGTTGGGATACAT
1 CTTCCTATGATTTTGGAAGACTGTTGAGAAGCTTCTTCACCATCTCCTTGTTGGGATACAT
132566 CTTCCTATGATTTTGGAAGACTGTTGAGAAGCTTCTTCACCATCTCCTTGTTGGGATACAT
1 CTTCCTATGATTTTGGAAGACTGTTGAGAAGCTTCTTCACCATCTCCTTGTTGGGATACAT
132627 CTT
1 CTT
132630 TCCCAATGCT
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
61 64 1.00
ACGTcount: A:0.21, C:0.22, G:0.19, T:0.38
Consensus pattern (61 bp):
CTTCCTATGATTTTGGAAGACTGTTGAGAAGCTTCTTCACCATCTCCTTGTTGGGATACAT
Found at i:134024 original size:13 final size:13
Alignment explanation
Indices: 134006--134036 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
133996 CAATTTCATT
134006 ATGTATCGATACA
1 ATGTATCGATACA
134019 ATGTATCGATACA
1 ATGTATCGATACA
*
134032 TTGTA
1 ATGTA
134037 CCATGTATCG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.35, C:0.13, G:0.16, T:0.35
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:134125 original size:19 final size:20
Alignment explanation
Indices: 134081--134134 Score: 83
Period size: 19 Copynumber: 2.8 Consensus size: 20
134071 CTGCCAATCT
**
134081 CATGTATCGATACAATTGTC
1 CATGTATCGATACAATTGAA
134101 CATGTATCGATACAA-TGAA
1 CATGTATCGATACAATTGAA
134120 CATGTATCGATACAA
1 CATGTATCGATACAA
134135 AGCATAATGT
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
19 17 0.53
20 15 0.47
ACGTcount: A:0.37, C:0.19, G:0.15, T:0.30
Consensus pattern (20 bp):
CATGTATCGATACAATTGAA
Found at i:134146 original size:20 final size:19
Alignment explanation
Indices: 134081--134150 Score: 70
Period size: 20 Copynumber: 3.6 Consensus size: 19
134071 CTGCCAATCT
* **
134081 CATGTATCGATACAATTGTC
1 CATGTATCGATACAA-AGAA
*
134101 CATGTATCGATACAATGAA
1 CATGTATCGATACAAAGAA
134120 CATGTATCGATACAAAGCATA
1 CATGTATCGATACAAAG-A-A
134141 -ATGTATCGAT
1 CATGTATCGAT
134151 GCATCTGGGT
Statistics
Matches: 45, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
19 18 0.40
20 26 0.58
21 1 0.02
ACGTcount: A:0.37, C:0.17, G:0.16, T:0.30
Consensus pattern (19 bp):
CATGTATCGATACAAAGAA
Found at i:134499 original size:41 final size:41
Alignment explanation
Indices: 134444--134548 Score: 122
Period size: 41 Copynumber: 2.6 Consensus size: 41
134434 TCCTAACAAG
* * * *
134444 CAAGTTAACAAATGAGAAGAGGTTAATTGGGATAAAACCAA
1 CAAGTCAACAAATGAAAAGAGGTTAACTGGGACAAAACCAA
* * *
134485 CAAGTCAACAAATGAAAAGGGGTTGACTGGGACAAAACCGA
1 CAAGTCAACAAATGAAAAGAGGTTAACTGGGACAAAACCAA
* *
134526 CAAGTCAACACAT-AAAAAAGGTT
1 CAAGTCAACAAATGAAAAGAGGTT
134549 GATCGAGATG
Statistics
Matches: 54, Mismatches: 10, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
40 8 0.15
41 46 0.85
ACGTcount: A:0.48, C:0.14, G:0.22, T:0.16
Consensus pattern (41 bp):
CAAGTCAACAAATGAAAAGAGGTTAACTGGGACAAAACCAA
Found at i:134774 original size:66 final size:66
Alignment explanation
Indices: 134689--135047 Score: 318
Period size: 66 Copynumber: 5.3 Consensus size: 66
134679 TGACCAGGGT
* * *
134689 AAATCGATAAAGTCAACAAATAGTGACCAGGGCAAAACCTAAGTCAAAAAGGGGTTGAC-GAGAA
1 AAATCGATAAAGTCAACAAATGGTGACTAGGGCAAAACCTAAGTCAAAAAGGGGTTGACTAAG-A
134753 AG
65 AG
* * **
134755 AAATCGATAAAGTCAACAAATGGTGACTAGGGCAAAACCTAAGTCTAAATGGGGTTGACTAAGGT
1 AAATCGATAAAGTCAACAAATGGTGACTAGGGCAAAACCTAAGTCAAAAAGGGGTTGACTAAGAA
134820 G
66 G
* * * * * *
134821 AAACCGATAAAGTTAACAAATGGTGACTCA-AGCGAAACCTAAGTTGAAATA-GGGTTGACTAAG
1 AAATCGATAAAGTCAACAAATGGTGACT-AGGGCAAAACCTAAG-TCAAAAAGGGGTTGACTAAG
**
134884 GCG
64 AAG
* *
134887 AAATAGATAAAGTCAACAAACAAATGGTGACTAAGGCAAAACCTTTTGCCTAAGTCAAAATA-GG
1 AAATCGATAAAGT---C-AACAAATGGTGACTAGGGCAAAA-------CCTAAGTCAAAA-AGGG
* *
134951 GTTGATTAAGATG
54 GTTGACTAAGAAG
* *
134964 AAA-CAGATAAAGTCAACAAATGGTGACTAGGGCAAAACCTAAGTCGAAATGGGGTTGAC-AAGG
1 AAATC-GATAAAGTCAACAAATGGTGACTAGGGCAAAACCTAAGTCAAAAAGGGGTTGACTAA-G
*
135027 CA-
64 AAG
135029 AAATCGATAAAGTCAACAA
1 AAATCGATAAAGTCAACAA
135048 TAAGTAAAGG
Statistics
Matches: 240, Mismatches: 33, Indels: 41
0.76 0.11 0.13
Matches are distributed among these distances:
65 19 0.08
66 138 0.57
67 6 0.03
69 1 0.00
70 19 0.08
73 22 0.09
74 1 0.00
76 4 0.02
77 30 0.12
ACGTcount: A:0.44, C:0.14, G:0.23, T:0.19
Consensus pattern (66 bp):
AAATCGATAAAGTCAACAAATGGTGACTAGGGCAAAACCTAAGTCAAAAAGGGGTTGACTAAGAA
G
Found at i:134888 original size:32 final size:31
Alignment explanation
Indices: 134778--134889 Score: 93
Period size: 32 Copynumber: 3.5 Consensus size: 31
134768 CAACAAATGG
* * *
134778 TGACTAGGGCAAAACCTAAGTCTAAATGGGGT
1 TGACTAAGGCGAAACCTAAGT-TAAATAGGGT
* * *
134810 TGACTAAGGTGAAACCGATAAAGTTAACAAATGG-
1 TGACTAAGGCGAAACC--T-AAGTTAA-ATAGGGT
134844 TGACTCAA-GCGAAACCTAAGTTGAAATAGGGT
1 TGACT-AAGGCGAAACCTAAGTT-AAATAGGGT
134876 TGACTAAGGCGAAA
1 TGACTAAGGCGAAA
134890 TAGATAAAGT
Statistics
Matches: 63, Mismatches: 9, Indels: 16
0.72 0.10 0.18
Matches are distributed among these distances:
31 11 0.17
32 27 0.43
34 16 0.25
35 9 0.14
ACGTcount: A:0.39, C:0.14, G:0.26, T:0.21
Consensus pattern (31 bp):
TGACTAAGGCGAAACCTAAGTTAAATAGGGT
Found at i:135020 original size:143 final size:135
Alignment explanation
Indices: 134694--135047 Score: 403
Period size: 143 Copynumber: 2.6 Consensus size: 135
134684 AGGGTAAATC
* * * * * **
134694 GATAAAGTCAACAAATAGTGACCAGGGCAAAACCTAAGTCAAAAAGGGGTTGACGAGAAAGAAAT
1 GATAAAGTCAACAAATGGTGACTAGGGCAAAACCTAAGTCGAAATGGGGTTGACAAG-GCGAAAT
* * * *
134759 CGATAAAGT---C-AACAAATGGTGACTAGGGCAAAACCTAAGTCTAAATGGGGTTGACTAAGGT
65 CGATAAAGTCAACAAACAAATGGTGACTAAGGCAAAACCTAAGTCAAAATAGGGTTGACTAAGAT
*
134820 GAAACC
130 GAAACA
* * * * *
134826 GATAAAGTTAACAAATGGTGACTCA-AGCGAAACCTAAGTTGAAATAGGGTTGACTAAGGCGAAA
1 GATAAAGTCAACAAATGGTGACT-AGGGCAAAACCTAAGTCGAAATGGGGTTGAC-AAGGCGAAA
*
134890 TAGATAAAGTCAACAAACAAATGGTGACTAAGGCAAAACCTTTTGCCTAAGTCAAAATAGGGTTG
64 TCGATAAAGTCAACAAACAAATGGTGACTAAGGCAAAA-------CCTAAGTCAAAATAGGGTTG
*
134955 ATTAAGATGAAACA
122 ACTAAGATGAAACA
*
134969 GATAAAGTCAACAAATGGTGACTAGGGCAAAACCTAAGTCGAAATGGGGTTGACAAGGCAAAATC
1 GATAAAGTCAACAAATGGTGACTAGGGCAAAACCTAAGTCGAAATGGGGTTGACAAGGCGAAATC
135034 GATAAAGTCAACAA
66 GATAAAGTCAACAA
135048 TAAGTAAAGG
Statistics
Matches: 182, Mismatches: 26, Indels: 18
0.81 0.12 0.08
Matches are distributed among these distances:
132 56 0.31
133 3 0.02
135 1 0.01
136 22 0.12
142 24 0.13
143 76 0.42
ACGTcount: A:0.44, C:0.14, G:0.23, T:0.19
Consensus pattern (135 bp):
GATAAAGTCAACAAATGGTGACTAGGGCAAAACCTAAGTCGAAATGGGGTTGACAAGGCGAAATC
GATAAAGTCAACAAACAAATGGTGACTAAGGCAAAACCTAAGTCAAAATAGGGTTGACTAAGATG
AAACA
Found at i:137022 original size:155 final size:153
Alignment explanation
Indices: 136813--137303 Score: 456
Period size: 154 Copynumber: 3.2 Consensus size: 153
136803 GGTACTTTTT
* * * * * * *
136813 GACATAAAACTATCTCTAAAACCTTAAAAAACTCATAAATAGCCTAAAATAGGTGAACCTATCCT
1 GACATAAAAGTATCTCGATAACCCTAAAAGACTTAAAAATAGCCTAAAA-AGGTGAACCTATCCT
* ** * * * * ** * * *
136878 AAATGTACACCTTTGGTGTGAAAGCATCGTAGTGACTACTTAGGGCTTGATTCTAGAGAAATTAT
65 AAATGCACACCTTTGGAATAAAAGCATCG-AGTGACTACCTAAGACTCAATTCTAAAAAAATTAC
*
136943 AAAAAAGCC-TCTAGGTGTATATCTTC
129 AAAAAAGCCAT-TAGG-GTATACCTTC
* *
136969 GACATAAAAGTATCTCGATAACCCTAAAAGATTTAAAAATAG-CTAAAAGAGGTGAACCTATTCT
1 GACATAAAAGTATCTCGATAACCCTAAAAGACTTAAAAATAGCCTAAAA-AGGTGAACCTATCCT
137033 AAATGCACACCTTTGGAATAAAAGCATCCCGA-TGACTACCTAAGACTCAATTCTAAAAAAATTA
65 AAATGCACACCTTTGGAATAAAAGCAT--CGAGTGACTACCTAAGACTCAATTCTAAAAAAATTA
* * *
137097 CAAAAATGCCATTATGGTATACCTTT
128 CAAAAAAGCCATTAGGGTATACCTTC
* * * * * * *
137123 AACATGAAAGTATCTCGATAACTCTAAAAGACTTGAAAATTGCCTAAAAAGGTGAATCTATCCTC
1 GACATAAAAGTATCTCGATAACCCTAAAAGACTTAAAAATAGCCTAAAAAGGTGAACCTATCCTA
* * * * *
137188 AATGCACACCTTTGGCATAAAAGCATCCCAGTGACTACCTAAAACTCGATT-TTAAAAAATTACA
66 AATGCACACCTTTGGAATAAAAGCAT-CGAGTGACTACCTAAGACTCAATTCTAAAAAAATTACA
* ** *
137252 AAAATA-CCTTTAAAGTATACCTTT
130 AAAA-AGCCATTAGGGTATACCTTC
*
137276 GACATGAAAA-TATC-CCAGTAACCCTAAA
1 GACAT-AAAAGTATCTCGA-TAACCCTAAA
137304 GAACTAAAAA
Statistics
Matches: 279, Mismatches: 48, Indels: 19
0.81 0.14 0.05
Matches are distributed among these distances:
152 2 0.01
153 51 0.18
154 103 0.37
155 85 0.30
156 36 0.13
157 2 0.01
ACGTcount: A:0.41, C:0.19, G:0.13, T:0.27
Consensus pattern (153 bp):
GACATAAAAGTATCTCGATAACCCTAAAAGACTTAAAAATAGCCTAAAAAGGTGAACCTATCCTA
AATGCACACCTTTGGAATAAAAGCATCGAGTGACTACCTAAGACTCAATTCTAAAAAAATTACAA
AAAAGCCATTAGGGTATACCTTC
Found at i:141910 original size:40 final size:40
Alignment explanation
Indices: 141819--141911 Score: 107
Period size: 40 Copynumber: 2.3 Consensus size: 40
141809 TAACTAGGGT
* *
141819 AAAACTAATAAAGTAAACAAGTTAGAGGGGTTGACAAGGT
1 AAAACTAATAAAGTAAACAAGTTAAAGGGGTTGACAAGGC
* * * * *
141859 GAAACTGATAAAGTCAACAAGTTAAAGGGGTTTGCCATGGC
1 AAAACTAATAAAGTAAACAAGTTAAAGGGG-TTGACAAGGC
141900 AAAAC-AATAAAG
1 AAAACTAATAAAG
141912 ATAACTAATT
Statistics
Matches: 43, Mismatches: 9, Indels: 2
0.80 0.17 0.04
Matches are distributed among these distances:
40 32 0.74
41 11 0.26
ACGTcount: A:0.46, C:0.11, G:0.24, T:0.19
Consensus pattern (40 bp):
AAAACTAATAAAGTAAACAAGTTAAAGGGGTTGACAAGGC
Found at i:141991 original size:41 final size:40
Alignment explanation
Indices: 141929--142051 Score: 122
Period size: 41 Copynumber: 3.0 Consensus size: 40
141919 ATTAGAGAAA
* * *
141929 TTGGCTAAGGAGAAATTGATAATGCCAACAAGTT-AAAGGG
1 TTGGCT-AGGGGAAATCGATAAAGCCAACAAGTTAAAAGGG
* *
141969 TTTGGCTGGGGCGAAATCGATAAAGCTAACAAGTTAGAAAGGG
1 -TTGGCTAGGG-GAAATCGATAAAGCCAACAAGTTA-AAAGGG
* *
142012 TTGGCTAGGGTAAAACTGATAAAGCCAACAAGTTGAAAAG
1 TTGGCTAGGGGAAATC-GATAAAGCCAACAAGTT-AAAAG
142052 TTTGACTAGG
Statistics
Matches: 68, Mismatches: 9, Indels: 9
0.79 0.10 0.10
Matches are distributed among these distances:
40 2 0.03
41 30 0.44
42 29 0.43
43 7 0.10
ACGTcount: A:0.39, C:0.11, G:0.28, T:0.21
Consensus pattern (40 bp):
TTGGCTAGGGGAAATCGATAAAGCCAACAAGTTAAAAGGG
Found at i:142226 original size:82 final size:82
Alignment explanation
Indices: 142085--142241 Score: 181
Period size: 82 Copynumber: 1.9 Consensus size: 82
142075 CAAGCCAACA
* * * ** **
142085 AGTTAGAGGGGCTAGCTAGGGCAAATTCAATAAAGCTAATAGCTCAGAGGGGTTTACTAAAGTGA
1 AGTTAGAGAGGCTAGCTAGGGCAAAATCAATAAAGCTAATAGCTCAAAGGGGTCAACTAAAGAAA
142150 AACTGATAAAGTCAATC
66 AACTGATAAAGTCAATC
* * * * * *
142167 AGTTAGAGAGGTTGGCTAGGGCAAAATCGATTAAGCTAATAAG-TTAAAGGGGTCAACTAAGGAA
1 AGTTAGAGAGGCTAGCTAGGGCAAAATCAATAAAGCTAAT-AGCTCAAAGGGGTCAACTAAAGAA
142231 AAACTGATAAA
65 AAACTGATAAA
142242 ATTTGCAGTT
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
82 59 0.97
83 2 0.03
ACGTcount: A:0.40, C:0.11, G:0.26, T:0.22
Consensus pattern (82 bp):
AGTTAGAGAGGCTAGCTAGGGCAAAATCAATAAAGCTAATAGCTCAAAGGGGTCAACTAAAGAAA
AACTGATAAAGTCAATC
Found at i:142751 original size:41 final size:41
Alignment explanation
Indices: 142620--142792 Score: 122
Period size: 41 Copynumber: 4.2 Consensus size: 41
142610 ACTATAAAAT
142620 CAACAAGTTAGAGGGATTGG-T-AGAGCAAAA-CTGATAAAGC
1 CAACAAGTTAGAGGGATTGGCTAAG-GCAAAATC-GATAAAGC
* * ** * * * *
142660 CAACAAGTTAAAGGGGTTATCCAGGGCAAAAGC-ATTAAAGT
1 CAACAAGTTAGAGGGATTGGCTAAGGCAAAATCGA-TAAAGC
* * *
142701 TAACTAGTTTGAGGGATTGGCTAAGGCAAAATCGATAAAGC
1 CAACAAGTTAGAGGGATTGGCTAAGGCAAAATCGATAAAGC
* * ** * *
142742 CAACAAGTTTGTAGAG-TTGGCTAAGGTGAAATTGATAAAAC
1 CAACAAGTTAG-AGGGATTGGCTAAGGCAAAATCGATAAAGC
142783 CAACAAGTTA
1 CAACAAGTTA
142793 AAAAAGGTTG
Statistics
Matches: 101, Mismatches: 26, Indels: 11
0.73 0.19 0.08
Matches are distributed among these distances:
40 17 0.17
41 78 0.77
42 6 0.06
ACGTcount: A:0.40, C:0.13, G:0.25, T:0.22
Consensus pattern (41 bp):
CAACAAGTTAGAGGGATTGGCTAAGGCAAAATCGATAAAGC
Found at i:143191 original size:41 final size:41
Alignment explanation
Indices: 143085--143183 Score: 119
Period size: 41 Copynumber: 2.4 Consensus size: 41
143075 AACTTAGAGG
* ** *
143085 GGTTAACTAGGGCAAAATTGATAAAGTCAATTAGTTAAAGA
1 GGTTAACTAAGGCAAAATTGATAAAGTCAACGAGTTAAAAA
* **
143126 GCTTGGC-AAGAGCAAAATTGATAAAGTCAACGAGTTAAAAA
1 GGTTAACTAAG-GCAAAATTGATAAAGTCAACGAGTTAAAAA
143167 GGTTAACTAAGGCAAAA
1 GGTTAACTAAGGCAAAA
143184 CCGATAAAAC
Statistics
Matches: 46, Mismatches: 10, Indels: 4
0.77 0.17 0.07
Matches are distributed among these distances:
40 2 0.04
41 41 0.89
42 3 0.07
ACGTcount: A:0.45, C:0.10, G:0.22, T:0.22
Consensus pattern (41 bp):
GGTTAACTAAGGCAAAATTGATAAAGTCAACGAGTTAAAAA
Found at i:143697 original size:123 final size:123
Alignment explanation
Indices: 143511--143738 Score: 271
Period size: 123 Copynumber: 1.9 Consensus size: 123
143501 AGGTGAAATC
* * *
143511 AATAAAGTTAAATAATTACAGAGGTTGGCAAGGGCGAAACCAATAAAGCTAACAAATTTGAGAGA
1 AATAAAGTCAAATAATTACAGAGGTTGACAAGGGCGAAACCAATAAAGCTAACAAATTAGAGAGA
* * * * *
143576 TTGACCAGGGTAAAACTGATAAAACCAATAGGTTAGAGGGTTTAACTAGGGCAAAACT
66 TTGACCAAGGCAAAAATGATAAAACCAACAAGTTAGAGGGTTTAACTAGGGCAAAACT
* * * * *
143634 AATAAAGTCAACTAATTAGAGAGGTTGACTAGGGCGAAACCAA-AAGAG-TAAACCAGTTAGAGA
1 AATAAAGTCAAATAATTACAGAGGTTGACAAGGGCGAAACCAATAA-AGCT-AACAAATTAGAGA
* ** *
143697 GGTTGGGCAAGGCAAAAATGATAAAGCCAACAAGTTAGAGGG
64 GATTGACCAAGGCAAAAATGATAAAACCAACAAGTTAGAGGG
143739 GTTGAAAAAA
Statistics
Matches: 86, Mismatches: 17, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
122 3 0.03
123 83 0.97
ACGTcount: A:0.44, C:0.12, G:0.25, T:0.19
Consensus pattern (123 bp):
AATAAAGTCAAATAATTACAGAGGTTGACAAGGGCGAAACCAATAAAGCTAACAAATTAGAGAGA
TTGACCAAGGCAAAAATGATAAAACCAACAAGTTAGAGGGTTTAACTAGGGCAAAACT
Found at i:144000 original size:41 final size:41
Alignment explanation
Indices: 143923--144010 Score: 101
Period size: 41 Copynumber: 2.1 Consensus size: 41
143913 AGCAAATGCC
*
143923 ATAAAGCTAACAAGTTAGAAGGTTTGACTAAGATGAAA-CT
1 ATAAAGCTAACAAGTTAGAAGGTTAGACTAAGATGAAACCT
* *
143963 GATAAAGTTAACTAGTTAGAGAGGTTAG-CT-AGAATGAAACCT
1 -ATAAAGCTAACAAGTTAGA-AGGTTAGACTAAG-ATGAAACCT
144005 ATAAAG
1 ATAAAG
144011 ACAATAGGTT
Statistics
Matches: 41, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
40 2 0.05
41 31 0.76
42 8 0.20
ACGTcount: A:0.44, C:0.09, G:0.22, T:0.25
Consensus pattern (41 bp):
ATAAAGCTAACAAGTTAGAAGGTTAGACTAAGATGAAACCT
Found at i:144160 original size:70 final size:70
Alignment explanation
Indices: 144046--144180 Score: 157
Period size: 70 Copynumber: 1.9 Consensus size: 70
144036 GGCGAAACTA
* * ** *
144046 ATAAAGTCAACCAGTTAAAGAGCTTGGCTAAGGTGAAATCGATAAAGCCAA-CAAGTTAGAGAGG
1 ATAAAGCCAACAAGTTAAAGAGCTTGGCTAAGGCAAAATCGATAAAG-CAACCAAGTTAAAGAGG
144110 TAACAG
65 TAACAG
* * * *
144116 ATAAAGCCAACAAGTTAGAGAGGTTGGCCT-AGGCAAAATTGATAAAGCAACCTAGTTAAAGAGG
1 ATAAAGCCAACAAGTTAAAGAGCTTGG-CTAAGGCAAAATCGATAAAGCAACCAAGTTAAAGAGG
144180 T
65 T
144181 TAGTCAAGGC
Statistics
Matches: 54, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
69 3 0.06
70 49 0.91
71 2 0.04
ACGTcount: A:0.42, C:0.14, G:0.24, T:0.19
Consensus pattern (70 bp):
ATAAAGCCAACAAGTTAAAGAGCTTGGCTAAGGCAAAATCGATAAAGCAACCAAGTTAAAGAGGT
AACAG
Found at i:144200 original size:41 final size:41
Alignment explanation
Indices: 144115--144284 Score: 191
Period size: 41 Copynumber: 4.1 Consensus size: 41
144105 AGAGGTAACA
* * * *
144115 GATAAAGCCAACAAGTTAGAGAGGTTGGCCTAGGCAAAATT
1 GATAAAGCCAACAAGTTAAAGAGGTTAGCCAAGGCAAAACT
* * *
144156 GATAAAG-CAACCTAGTTAAAGAGGTTAGTCAAGGCGAAACT
1 GATAAAGCCAA-CAAGTTAAAGAGGTTAGCCAAGGCAAAACT
* * * *
144197 GATAAAACCAACAAGTTATATGA-GTTAGCCAAGGCGAAACC
1 GATAAAGCCAACAAGTTA-AAGAGGTTAGCCAAGGCAAAACT
* *
144238 GACAAAGCCAACAAGTTAGAGAGGTTAGCCAAGGCAAAACT
1 GATAAAGCCAACAAGTTAAAGAGGTTAGCCAAGGCAAAACT
144279 GATAAA
1 GATAAA
144285 TTCGATAGGT
Statistics
Matches: 106, Mismatches: 19, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
40 5 0.05
41 95 0.90
42 6 0.06
ACGTcount: A:0.43, C:0.16, G:0.24, T:0.17
Consensus pattern (41 bp):
GATAAAGCCAACAAGTTAAAGAGGTTAGCCAAGGCAAAACT
Found at i:144619 original size:41 final size:40
Alignment explanation
Indices: 144548--144683 Score: 202
Period size: 41 Copynumber: 3.4 Consensus size: 40
144538 AATGCAAAAC
* *
144548 TTAGAGGGGTTGGC-AGGGTGAAACCGATAAAGGCAACAAG
1 TTAGAGGGGTTGGCTAGGGTGAAACCAATAAAGTCAAC-AG
144588 TTAGAGGGGTTGGCTAGGGTGAAACCAATAAAGTCAACTAG
1 TTAGAGGGGTTGGCTAGGGTGAAACCAATAAAGTCAAC-AG
* *
144629 TTAGAGGTGTTGGCTAAGGTGAAACCAATAAAGTCAATCAG
1 TTAGAGGGGTTGGCTAGGGTGAAACCAATAAAGTCAA-CAG
144670 TTAGAGGGGTTGGC
1 TTAGAGGGGTTGGC
144684 CAAGACGAAA
Statistics
Matches: 88, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
40 14 0.16
41 73 0.83
42 1 0.01
ACGTcount: A:0.33, C:0.12, G:0.34, T:0.21
Consensus pattern (40 bp):
TTAGAGGGGTTGGCTAGGGTGAAACCAATAAAGTCAACAG
Found at i:144713 original size:82 final size:81
Alignment explanation
Indices: 144548--144714 Score: 183
Period size: 82 Copynumber: 2.0 Consensus size: 81
144538 AATGCAAAAC
* * * * **
144548 TTAGAGGGGTTGGCAGGGTGAAACCGATAAAGGCAACAAGTTAGAGGGGTTGGCTAGGGTGAAAC
1 TTAGAGGGGTTGGCAAGGTGAAACCAATAAAGGCAACAAGTTAGAGGGGTTGGCCAAGACGAAAC
* *
144613 CAATAAAGTCAACTAG
66 CAATAAAGCCAACAAG
* *
144629 TTAGAGGTGTTGGCTAAGGTGAAACCAATAAAGTCAATC-AGTTAGAGGGGTTGGCCAAGACGAA
1 TTAGAGGGGTTGGC-AAGGTGAAACCAATAAAGGCAA-CAAGTTAGAGGGGTTGGCCAAGACGAA
*** *
144693 ATTGATAAAGCCACCAAG
64 ACCAATAAAGCCAACAAG
144711 TTAG
1 TTAG
144715 GAAAGGGTTA
Statistics
Matches: 70, Mismatches: 14, Indels: 3
0.80 0.16 0.03
Matches are distributed among these distances:
81 13 0.19
82 56 0.80
83 1 0.01
ACGTcount: A:0.35, C:0.13, G:0.31, T:0.20
Consensus pattern (81 bp):
TTAGAGGGGTTGGCAAGGTGAAACCAATAAAGGCAACAAGTTAGAGGGGTTGGCCAAGACGAAAC
CAATAAAGCCAACAAG
Found at i:147165 original size:37 final size:37
Alignment explanation
Indices: 147123--147248 Score: 129
Period size: 37 Copynumber: 3.6 Consensus size: 37
147113 GAGTGCCTCC
*
147123 AGCTTGTGTGGGCTTTGACTCAAAGTTAGGTGCCACT
1 AGCTTGTGTGGGCTTTAACTCAAAGTTAGGTGCCACT
* * * *
147160 AGCTTGTGTGGGCTTTAACTC--GGGT-GTTG--TC-
1 AGCTTGTGTGGGCTTTAACTCAAAGTTAGGTGCCACT
* * *
147191 AGCTTGTGCGGGCTTTGACTCAAACTTAGGTGCCACT
1 AGCTTGTGTGGGCTTTAACTCAAAGTTAGGTGCCACT
*
147228 ACCTTGTGTGGGCTTTAACTC
1 AGCTTGTGTGGGCTTTAACTC
147249 GGGTGCTGCC
Statistics
Matches: 68, Mismatches: 15, Indels: 12
0.72 0.16 0.13
Matches are distributed among these distances:
31 19 0.28
32 1 0.01
33 1 0.01
34 6 0.09
35 2 0.03
36 1 0.01
37 38 0.56
ACGTcount: A:0.16, C:0.21, G:0.29, T:0.34
Consensus pattern (37 bp):
AGCTTGTGTGGGCTTTAACTCAAAGTTAGGTGCCACT
Found at i:147210 original size:68 final size:68
Alignment explanation
Indices: 147121--147277 Score: 269
Period size: 68 Copynumber: 2.3 Consensus size: 68
147111 TCGAGTGCCT
* * *
147121 CCAGCTTGTGTGGGCTTTGACTCAAAGTTAGGTGCCACTAGCTTGTGTGGGCTTTAACTCGGGTG
1 CCAGCTTGTGCGGGCTTTGACTCAAACTTAGGTGCCACTACCTTGTGTGGGCTTTAACTCGGGTG
*
147186 TTG
66 CTG
*
147189 TCAGCTTGTGCGGGCTTTGACTCAAACTTAGGTGCCACTACCTTGTGTGGGCTTTAACTCGGGTG
1 CCAGCTTGTGCGGGCTTTGACTCAAACTTAGGTGCCACTACCTTGTGTGGGCTTTAACTCGGGTG
147254 CTG
66 CTG
147257 CCAGCTTGTGCGGGCTTTGAC
1 CCAGCTTGTGCGGGCTTTGAC
147278 AAGGGTGCCA
Statistics
Matches: 83, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
68 83 1.00
ACGTcount: A:0.14, C:0.22, G:0.31, T:0.32
Consensus pattern (68 bp):
CCAGCTTGTGCGGGCTTTGACTCAAACTTAGGTGCCACTACCTTGTGTGGGCTTTAACTCGGGTG
CTG
Found at i:147265 original size:31 final size:31
Alignment explanation
Indices: 147160--147274 Score: 86
Period size: 31 Copynumber: 3.5 Consensus size: 31
147150 AGGTGCCACT
* * *
147160 AGCTTGTGTGGGCTTTAACTCGGGTGTTGTC
1 AGCTTGTGCGGGCTTTAACTCGGGTGCTGCC
** ** *
147191 AGCTTGTGCGGGCTTTGACTCAAACTTAGGTGCCACT
1 AGCTTGTGCGGGC-TT---T--AACTCGGGTGCTGCC
* *
147228 ACCTTGTGTGGGCTTTAACTCGGGTGCTGCC
1 AGCTTGTGCGGGCTTTAACTCGGGTGCTGCC
147259 AGCTTGTGCGGGCTTT
1 AGCTTGTGCGGGCTTT
147275 GACAAGGGTG
Statistics
Matches: 61, Mismatches: 17, Indels: 12
0.68 0.19 0.13
Matches are distributed among these distances:
31 36 0.59
32 2 0.03
33 1 0.02
35 1 0.02
36 2 0.03
37 19 0.31
ACGTcount: A:0.12, C:0.22, G:0.32, T:0.34
Consensus pattern (31 bp):
AGCTTGTGCGGGCTTTAACTCGGGTGCTGCC
Found at i:147602 original size:31 final size:30
Alignment explanation
Indices: 147566--147675 Score: 116
Period size: 31 Copynumber: 3.6 Consensus size: 30
147556 AGCTTATGTA
147566 GGCTTTGACT-CAGGTGCCGCCAACTTGTGC
1 GGCTTTGACTAC-GGTGCCGCCAACTTGTGC
* *
147596 GAGCTTTGACTACGGTGCCACCAACTTGTGT
1 G-GCTTTGACTACGGTGCCGCCAACTTGTGC
* * *
147627 GGCTTAGAAT-CGAGTGTCGCCAACTTGTGC
1 GGCTTTGACTACG-GTGCCGCCAACTTGTGC
*
147657 GGGCTTTGACTAGGGTGCC
1 -GGCTTTGACTACGGTGCC
147676 ACTAACTCGT
Statistics
Matches: 64, Mismatches: 11, Indels: 9
0.76 0.13 0.11
Matches are distributed among these distances:
29 2 0.03
30 22 0.34
31 38 0.59
32 2 0.03
ACGTcount: A:0.16, C:0.25, G:0.31, T:0.27
Consensus pattern (30 bp):
GGCTTTGACTACGGTGCCGCCAACTTGTGC
Found at i:147648 original size:61 final size:61
Alignment explanation
Indices: 147547--147698 Score: 180
Period size: 61 Copynumber: 2.4 Consensus size: 61
147537 CTCGAACTTA
* * * *
147547 GGTGCCACCAGCTTATGTAGGCTTTGACTCAGGTGCCGCCAACTTGTGCGAGCTTTGACTAC
1 GGTGCCACCAACTTGTGT-GGCTTAGAATCAGGTGCCGCCAACTTGTGCGAGCTTTGACTAC
* * *
147609 GGTGCCACCAACTTGTGTGGCTTAGAATC-GAGTGTCGCCAACTTGTGCGGGCTTTGACTAG
1 GGTGCCACCAACTTGTGTGGCTTAGAATCAG-GTGCCGCCAACTTGTGCGAGCTTTGACTAC
* *
147670 GGTGCCACTAACTCGTGTGGACTTTAGAA
1 GGTGCCACCAACTTGTGTGG-C-TTAGAA
147699 AGGGAAGGAA
Statistics
Matches: 78, Mismatches: 9, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
60 1 0.01
61 54 0.69
62 17 0.22
63 6 0.08
ACGTcount: A:0.19, C:0.24, G:0.29, T:0.28
Consensus pattern (61 bp):
GGTGCCACCAACTTGTGTGGCTTAGAATCAGGTGCCGCCAACTTGTGCGAGCTTTGACTAC
Found at i:147664 original size:179 final size:179
Alignment explanation
Indices: 147261--147666 Score: 433
Period size: 179 Copynumber: 2.3 Consensus size: 179
147251 GTGCTGCCAG
* * * *
147261 CTTGTGCGGGCTTTGACA-AGGGTGCCACCAACTCGTGTGGGCTTTGAAATTCCAAGGCTTGATC
1 CTTGTGCGGGCTTAGA-ATAGAGTGCCACCAACTCGTGTGGGCTTTGACATTCCAAGGCTTGACC
* * * * * * *
147325 TTCTTAGAGAGGCACCAACTAATTTGGACTTGACTCGAACTTATGTGCCACCAGCTTGAGTGGGC
65 TCCTTAGACAAGCACCAAATAATTTAGACTTGACTCGAACTTAGGTGCCACCAGCTTGAGTAGGC
** * * *
147390 TTTGACTCAGGTGTTGTCAACTCGTGCAAGCTTAGACTTAGGTGCCGCAG
130 TTTGACTCAGGTGCCGCCAACTCGTGCAAGCTTAGACTTAGGTGCCCCAA
* * * * * * *
147440 TTTGTGCGGGCTTTGACTAGGGTGCCACCAACTGGTGTAGGCTTTGACATTCTAAGGCTTGACCT
1 CTTGTGCGGGCTTAGAATAGAGTGCCACCAACTCGTGTGGGCTTTGACATTCCAAGGCTTGACCT
** *
147505 CCTTAGACAAGTGCTAAATAATTTAGACTTGACTCGAACTTAGGTGCCACCAGCTT-ATGTAGGC
66 CCTTAGACAAGCACCAAATAATTTAGACTTGACTCGAACTTAGGTGCCACCAGCTTGA-GTAGGC
* * *
147569 TTTGACTCAGGTGCCGCCAACTTGTGCGAGCTTTGAC-TACGGTGCCACCAA
130 TTTGACTCAGGTGCCGCCAACTCGTGCAAGCTTAGACTTA-GGTGCC-CCAA
* * * * * *
147620 CTTGTG-TGGCTTAGAATCGAGTGTCGCCAACTTGTGCGGGCTTTGAC
1 CTTGTGCGGGCTTAGAATAGAGTGCCACCAACTCGTGTGGGCTTTGAC
147667 TAGGGTGCCA
Statistics
Matches: 187, Mismatches: 36, Indels: 8
0.81 0.16 0.03
Matches are distributed among these distances:
178 3 0.02
179 177 0.95
180 7 0.04
ACGTcount: A:0.21, C:0.23, G:0.27, T:0.29
Consensus pattern (179 bp):
CTTGTGCGGGCTTAGAATAGAGTGCCACCAACTCGTGTGGGCTTTGACATTCCAAGGCTTGACCT
CCTTAGACAAGCACCAAATAATTTAGACTTGACTCGAACTTAGGTGCCACCAGCTTGAGTAGGCT
TTGACTCAGGTGCCGCCAACTCGTGCAAGCTTAGACTTAGGTGCCCCAA
Found at i:147955 original size:44 final size:42
Alignment explanation
Indices: 147870--148029 Score: 160
Period size: 44 Copynumber: 3.7 Consensus size: 42
147860 TACATCCTGA
* * *
147870 TCTTCGAGGACAAAGGAAAAAA-GAGAATAAAATGCGTCCTAC
1 TCTTTGAGGACAAAGGAAAAAAGGA-AATGAAGTGCGTCCTAC
147912 TCTTTGAGGACAAAGAGAAAAGAAGGAAATGAAGTGCGTCCTAC
1 TCTTTGAGGACAAAG-GAAAA-AAGGAAATGAAGTGCGTCCTAC
* * * * **
147956 TCTTTAAAGACAAAGGAAAAAAAGAAGATGAAGTGTGTCCTGT
1 TCTTTGAGGACAAAGGAAAAAAGGAA-ATGAAGTGCGTCCTAC
* *
147999 TCTTTGAGGATGAAGGGAAAAGAAGGAAATG
1 TCTTTGAGGA-CAAAGGAAAA-AAGGAAATG
148030 CGTCTTGCTC
Statistics
Matches: 98, Mismatches: 14, Indels: 10
0.80 0.11 0.08
Matches are distributed among these distances:
42 19 0.19
43 31 0.32
44 41 0.42
45 7 0.07
ACGTcount: A:0.43, C:0.11, G:0.26, T:0.19
Consensus pattern (42 bp):
TCTTTGAGGACAAAGGAAAAAAGGAAATGAAGTGCGTCCTAC
Found at i:149182 original size:79 final size:79
Alignment explanation
Indices: 149051--149220 Score: 250
Period size: 79 Copynumber: 2.2 Consensus size: 79
149041 ACAACGGGGC
* *
149051 TGGAGTATCCCCAATTATGGAAAATCAGTGTTCTGAAAATAAAACCAAGGTTGGAGTATCCTCTC
1 TGGAGTATCCCCAATTATAGAAAATCAGTATTCTGAAAATAAAACCAAGGTTGGAGTATCCTCTC
*
149116 GGAAATAACAGGAT
66 GAAAATAACAGGAT
* * * * **
149130 TGGAGTATCCCTATTTATAGAAAATCAGTATTTTGAAAATAAAATCGGGGTTGGAGTATCCTCTC
1 TGGAGTATCCCCAATTATAGAAAATCAGTATTCTGAAAATAAAACCAAGGTTGGAGTATCCTCTC
*
149195 GAAAATAACAGGGT
66 GAAAATAACAGGAT
149209 TGGAGTATCCCC
1 TGGAGTATCCCC
149221 GATTGTGAAA
Statistics
Matches: 80, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
79 80 1.00
ACGTcount: A:0.35, C:0.16, G:0.22, T:0.28
Consensus pattern (79 bp):
TGGAGTATCCCCAATTATAGAAAATCAGTATTCTGAAAATAAAACCAAGGTTGGAGTATCCTCTC
GAAAATAACAGGAT
Found at i:149277 original size:50 final size:51
Alignment explanation
Indices: 149205--149320 Score: 137
Period size: 50 Copynumber: 2.3 Consensus size: 51
149195 GAAAATAACA
* * * *
149205 GGGTTGGAGTATCCCCGATTGTGAAAAATCGATGCTTTAGAAAT-AAGGCT
1 GGGTTGGAGTATCCCAGATTGTGAAAAATCAATACTTTAGAAATAAAGGCG
* * * *
149255 GGGTTGGAGTATCCCTAG-TTGTGAGAAATCAATATTTTGGAAATAAAGTCG
1 GGGTTGGAGTATCCC-AGATTGTGAAAAATCAATACTTTAGAAATAAAGGCG
149306 GGGTTGGAGTATCCC
1 GGGTTGGAGTATCCC
149321 CTCAGAAATA
Statistics
Matches: 56, Mismatches: 8, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
50 36 0.64
51 20 0.36
ACGTcount: A:0.28, C:0.13, G:0.29, T:0.29
Consensus pattern (51 bp):
GGGTTGGAGTATCCCAGATTGTGAAAAATCAATACTTTAGAAATAAAGGCG
Done.