Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold308
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 505154
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.32
File 2 of 4
Found at i:149292 original size:129 final size:130
Alignment explanation
Indices: 149129--149491 Score: 398
Period size: 129 Copynumber: 2.8 Consensus size: 130
149119 AATAACAGGA
* * * *
149129 TTGGAGTATCCCTATTTAT-AGAAAATCAGTATTTTGAAAATAAAATCGGGGTTGGAGTATCCTC
1 TTGGAGTATCCCTAGTTGTGAG-AAATCAATATTTTGAAAATAAAATCGGGGTTGGAGTATCCCC
* * * * *
149193 TCGAAAATAACAGGGTTGGAGTATCCCCGATTGTGAAAAATCGATGCTTTAG-AAAT-AAGGCTG
65 TCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAAAAATCAATG-TTTAGAAAATAAAAGCAG
*
149256 GG
129 AG
* *
149258 TTGGAGTATCCCTAGTTGTGAGAAATCAATATTTTGGAAATAAAGTCGGGGTTGGAGTATCCCCT
1 TTGGAGTATCCCTAGTTGTGAGAAATCAATATTTTGAAAATAAAATCGGGGTTGGAGTATCCCCT
* * *
149323 C-AGAAATAACGGGGTTGGAGTATCCCCGATTATGAAAAATTAATGTTTTGAAAATAAAATCAGA
66 CGA-AAATAACGGGGTTGGAGTATCCCCGATTATGAAAAATCAATGTTTAGAAAATAAAAGCAGA
149387 G
130 G
* * * ** * *
149388 TTGGAGTATCCC-CGACTGTGAAAAATTGATGTTTT-AGAAATAAAA-CTGGGGTTAGAGTATCC
1 TTGGAGTATCCCTAG-TTGTGAGAAATCAATATTTTGA-AAATAAAATC-GGGGTTGGAGTATCC
* * *
149450 CCTTGGAAATAACGGGGTTGGAGTATCCCCGATTATAAAAAA
63 CCTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAAAAA
149492 ATTGGTGTTT
Statistics
Matches: 199, Mismatches: 27, Indels: 15
0.83 0.11 0.06
Matches are distributed among these distances:
128 5 0.03
129 101 0.51
130 93 0.47
ACGTcount: A:0.34, C:0.13, G:0.24, T:0.29
Consensus pattern (130 bp):
TTGGAGTATCCCTAGTTGTGAGAAATCAATATTTTGAAAATAAAATCGGGGTTGGAGTATCCCCT
CGAAAATAACGGGGTTGGAGTATCCCCGATTATGAAAAATCAATGTTTAGAAAATAAAAGCAGAG
Found at i:149348 original size:79 final size:79
Alignment explanation
Indices: 149255--149400 Score: 195
Period size: 79 Copynumber: 1.8 Consensus size: 79
149245 AAATAAGGCT
* * * * * *
149255 GGGTTGGAGTATCCCTAG-TTGTGAGAAATCAATATTTTGGAAATAAAGTCGGGGTTGGAGTATC
1 GGGTTGGAGTATCCC-AGATTATGAAAAATCAATATTTTGAAAATAAAATCAGAGTTGGAGTATC
149319 CCCTCAGAAATAACG
65 CCCTCAGAAATAACG
* * *
149334 GGGTTGGAGTATCCCCGATTATGAAAAATTAATGTTTTGAAAATAAAATCAGAGTTGGAGTATCC
1 GGGTTGGAGTATCCCAGATTATGAAAAATCAATATTTTGAAAATAAAATCAGAGTTGGAGTATCC
149399 CC
66 CC
149401 GACTGTGAAA
Statistics
Matches: 57, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
78 1 0.02
79 56 0.98
ACGTcount: A:0.32, C:0.14, G:0.25, T:0.29
Consensus pattern (79 bp):
GGGTTGGAGTATCCCAGATTATGAAAAATCAATATTTTGAAAATAAAATCAGAGTTGGAGTATCC
CCTCAGAAATAACG
Found at i:149446 original size:51 final size:51
Alignment explanation
Indices: 149332--149451 Score: 154
Period size: 51 Copynumber: 2.4 Consensus size: 51
149322 TCAGAAATAA
*
149332 CGGGGTTGGAGTATCCCCGATTATGAAAAATTAATGTTTTGAAAATAAAAT
1 CGGGGTTGGAGTATCCCCGACTATGAAAAATTAATGTTTTGAAAATAAAAT
* * * *
149383 CAGAGTTGGAGTATCCCCGACTGTGAAAAATTGATGTTTT-AGAAATAAAA-
1 CGGGGTTGGAGTATCCCCGACTATGAAAAATTAATGTTTTGA-AAATAAAAT
*
149433 CTGGGGTTAGAGTATCCCC
1 C-GGGGTTGGAGTATCCCC
149452 TTGGAAATAA
Statistics
Matches: 59, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
50 2 0.03
51 57 0.97
ACGTcount: A:0.34, C:0.13, G:0.23, T:0.29
Consensus pattern (51 bp):
CGGGGTTGGAGTATCCCCGACTATGAAAAATTAATGTTTTGAAAATAAAAT
Found at i:151871 original size:13 final size:13
Alignment explanation
Indices: 151824--151853 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
151814 GTAAACTTAG
151824 AATGTATCGATAC
1 AATGTATCGATAC
151837 AATGTATCGATAC
1 AATGTATCGATAC
151850 AATG
1 AATG
151854 AACAATGTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.40, C:0.13, G:0.17, T:0.30
Consensus pattern (13 bp):
AATGTATCGATAC
Found at i:152514 original size:41 final size:41
Alignment explanation
Indices: 152413--152514 Score: 109
Period size: 41 Copynumber: 2.5 Consensus size: 41
152403 ATCCCACTTT
* * * *
152413 TTGAGGACAAAGG-AAAAGAGAATGAAATGGGTCTTGCTCC
1 TTGAGGACAAAGGAAAAAGAAAAGGAAATGGATCATGCTCC
* * *
152453 TTAAGGACAAAGGAAGAAAGAAAAGGAAA-GTATCATGCTTC
1 TTGAGGACAAAGGAA-AAAGAAAAGGAAATGGATCATGCTCC
152494 TTGAGGACAAAGTGAAAAAGA
1 TTGAGGACAAAG-GAAAAAGA
152515 GAAAAAAGTG
Statistics
Matches: 51, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
40 12 0.24
41 25 0.49
42 14 0.27
ACGTcount: A:0.45, C:0.10, G:0.27, T:0.18
Consensus pattern (41 bp):
TTGAGGACAAAGGAAAAAGAAAAGGAAATGGATCATGCTCC
Found at i:152601 original size:88 final size:88
Alignment explanation
Indices: 152494--152811 Score: 282
Period size: 89 Copynumber: 3.6 Consensus size: 88
152484 ATCATGCTTC
* *
152494 TTGAGGAC-AAAGTGAAAA-AGAGAAA-AAAGTGCGTCCTATTCTTTGAGGAC-AAAAGGAAAAA
1 TTGAGGACAAAAGAGAAAAGAGA-AAATAAAGTGCGTCCTACTCTTTGAGGACAAAAAGG-AAAA
152555 AAATGGAAATAGAACGT-GTCCTGCTCT
64 AAA-GGAAAT-GAA-GTCGTCCTGCTCT
* *
152582 TTGAGGACAAAAGAGAAAAG-GAAAATAAAGTGCGTCCTGCTCTTTGAGGACAAAAAGGAAAAGA
1 TTGAGGACAAAAGAGAAAAGAGAAAATAAAGTGCGTCCTACTCTTTGAGGACAAAAAGGAAAAAA
152646 AGGAAATGAAGTGCGTCCTGCTCT
66 AGGAAATGAAGT-CGTCCTGCTCT
* * * * *
152670 TTGTGGACAAAAGGAGAAAAGA-AAGGAATAGAA-TGCATCCTTCCCTTTAAGGAC--AAAGGAG
1 TTGAGGACAAAA-GAGAAAAGAGAA--AATA-AAGTGCGTCCTACTCTTTGAGGACAAAAAGGA-
*
152731 AAAAGAA--AAATAAAGTGCGTCCTGCTCT
61 AAAA-AAGGAAATGAAGT-CGTCCTGCTCT
* * * * * *
152759 TTGAGGATAAAAGGGAAAAGAAGGAAATGAAGTGCATCCTACCCTTTGAGGAC
1 TTGAGGACAAAAGAGAAAAG-AGAAAATAAAGTGCGTCCTACTCTTTGAGGAC
152812 TAAGAGGTGC
Statistics
Matches: 196, Mismatches: 18, Indels: 32
0.80 0.07 0.13
Matches are distributed among these distances:
86 2 0.01
87 5 0.03
88 67 0.34
89 87 0.44
90 10 0.05
91 23 0.12
92 2 0.01
ACGTcount: A:0.42, C:0.14, G:0.25, T:0.19
Consensus pattern (88 bp):
TTGAGGACAAAAGAGAAAAGAGAAAATAAAGTGCGTCCTACTCTTTGAGGACAAAAAGGAAAAAA
AGGAAATGAAGTCGTCCTGCTCT
Found at i:152678 original size:45 final size:45
Alignment explanation
Indices: 152520--152811 Score: 289
Period size: 43 Copynumber: 6.5 Consensus size: 45
152510 AAAGAGAAAA
** *
152520 AAGTGCGTCCTATTCTTTGAGGACAAAAG-GAAAAAAAATGGAAATAG
1 AAGTGCGTCCTGCTCTTTGAGGACAAAAGAG-AAAAGAA-GGAAAT-G
* *
152567 AACGT--GTCCTGCTCTTTGAGGACAAAAGAGAAAAG--GAAAATA
1 AA-GTGCGTCCTGCTCTTTGAGGACAAAAGAGAAAAGAAGGAAATG
152609 AAGTGCGTCCTGCTCTTTGAGGACAAAA-AGGAAAAGAAGGAAATG
1 AAGTGCGTCCTGCTCTTTGAGGACAAAAGA-GAAAAGAAGGAAATG
*
152654 AAGTGCGTCCTGCTCTTTGTGGACAAAAGGAGAAAAGAAAGG-AATAG
1 AAGTGCGTCCTGCTCTTTGAGGACAAAA-GAGAAAAG-AAGGAAAT-G
* * * * * *
152701 AA-TGCATCCTTCCCTTTAAGGACAAAGGAGAAAAGAA--AAATA
1 AAGTGCGTCCTGCTCTTTGAGGACAAAAGAGAAAAGAAGGAAATG
* *
152743 AAGTGCGTCCTGCTCTTTGAGGATAAAAGGGAAAAGAAGGAAATG
1 AAGTGCGTCCTGCTCTTTGAGGACAAAAGAGAAAAGAAGGAAATG
* * *
152788 AAGTGCATCCTACCCTTTGAGGAC
1 AAGTGCGTCCTGCTCTTTGAGGAC
152812 TAAGAGGTGC
Statistics
Matches: 203, Mismatches: 27, Indels: 32
0.77 0.10 0.12
Matches are distributed among these distances:
41 2 0.01
42 5 0.02
43 64 0.32
44 2 0.01
45 64 0.32
46 53 0.26
47 11 0.05
48 2 0.01
ACGTcount: A:0.40, C:0.14, G:0.25, T:0.20
Consensus pattern (45 bp):
AAGTGCGTCCTGCTCTTTGAGGACAAAAGAGAAAAGAAGGAAATG
Found at i:152682 original size:134 final size:134
Alignment explanation
Indices: 152520--152811 Score: 417
Period size: 134 Copynumber: 2.2 Consensus size: 134
152510 AAAGAGAAAA
* ** *
152520 AAGTGCGTCCTATTCTTTGAGGACAAAAGGA-AAAA-AAATGGAAATAGAACGTGTCCTGCTCTT
1 AAGTGCGTCCTACTCTTTGAGGACAAAAGGAGAAAAGAAA-GG-AATAGAACGCATCCTGCCCTT
* *
152583 TGAGGACAAAAGAGAAAAGGAAAATAAAGTGCGTCCTGCTCTTTGAGGACAAAAAGGAAAAGAAG
64 TAAGGACAAAAGAGAAAAGAAAAATAAAGTGCGTCCTGCTCTTTGAGGACAAAAAGGAAAAGAAG
152648 GAAATG
129 GAAATG
* * * *
152654 AAGTGCGTCCTGCTCTTTGTGGACAAAAGGAGAAAAGAAAGGAATAGAATGCATCCTTCCCTTTA
1 AAGTGCGTCCTACTCTTTGAGGACAAAAGGAGAAAAGAAAGGAATAGAACGCATCCTGCCCTTTA
* * *
152719 AGGACAAAGGAGAAAAGAAAAATAAAGTGCGTCCTGCTCTTTGAGGATAAAAGGGAAAAGAAGGA
66 AGGACAAAAGAGAAAAGAAAAATAAAGTGCGTCCTGCTCTTTGAGGACAAAAAGGAAAAGAAGGA
152784 AATG
131 AATG
* *
152788 AAGTGCATCCTACCCTTTGAGGAC
1 AAGTGCGTCCTACTCTTTGAGGAC
152812 TAAGAGGTGC
Statistics
Matches: 139, Mismatches: 17, Indels: 4
0.87 0.11 0.03
Matches are distributed among these distances:
134 130 0.94
135 6 0.04
136 3 0.02
ACGTcount: A:0.40, C:0.14, G:0.25, T:0.20
Consensus pattern (134 bp):
AAGTGCGTCCTACTCTTTGAGGACAAAAGGAGAAAAGAAAGGAATAGAACGCATCCTGCCCTTTA
AGGACAAAAGAGAAAAGAAAAATAAAGTGCGTCCTGCTCTTTGAGGACAAAAAGGAAAAGAAGGA
AATG
Found at i:152935 original size:55 final size:55
Alignment explanation
Indices: 152819--152982 Score: 238
Period size: 55 Copynumber: 2.9 Consensus size: 55
152809 GACTAAGAGG
* *
152819 TGCCACCAACTTGTGTGGGCTTTGAAGGAGAAGGCATCTTGCTCTTTGAGGACTGGAAAA
1 TGCCACCAACTTGTGTGGGCTTT--A--A-AAGGCGTCCTGCTCTTTGAGGACTGGAAAA
*
152879 TGCCACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGAGGACTGGAAAA
1 TGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCTCTTTGAGGACTGGAAAA
* *
152934 TGCCACCAACTTGTGTGGGATTTAAAAGGCGTCCTACTCTTTGAGGACT
1 TGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCTCTTTGAGGACT
152983 AAAGGGGGAA
Statistics
Matches: 98, Mismatches: 6, Indels: 5
0.90 0.06 0.05
Matches are distributed among these distances:
55 73 0.74
56 1 0.01
58 1 0.01
60 23 0.23
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.29
Consensus pattern (55 bp):
TGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCTCTTTGAGGACTGGAAAA
Found at i:153245 original size:95 final size:94
Alignment explanation
Indices: 152909--153243 Score: 544
Period size: 94 Copynumber: 3.6 Consensus size: 94
152899 TTTAAAAGGT
*
152909 GTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGATTTAAAAGGCGTCCTACTCT
1 GTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTACTCT
* *
152974 TTGAGGACTAAAGGGGGAAAGGAGAGAAC
66 TTGAGGACTAAAGGGCGAAAGGAGAGAGC
* *
153003 GTCCTGCTTTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTCCTCT
1 GTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTACTCT
*
153068 TTGAGGACTAAAAGGGTGAAAGGAGAGAGC
66 TTGAGGACT-AAAGGGCGAAAGGAGAGAGC
* * * *
153098 GTCCTGCTCTTTGTGGAATGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCT
1 GTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTACTCT
*
153163 TTGAGGACTAAAGGGCGAAAAGAGAGAGC
66 TTGAGGACTAAAGGGCGAAAGGAGAGAGC
* *
153192 GTCCTACTCTTTGAGGACTGGAAAATGCCACCAACTTGTATGGGCTTTAAAA
1 GTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAA
153244 AGAAAAAGGG
Statistics
Matches: 224, Mismatches: 16, Indels: 2
0.93 0.07 0.01
Matches are distributed among these distances:
94 137 0.61
95 87 0.39
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.25
Consensus pattern (94 bp):
GTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTACTCT
TTGAGGACTAAAGGGCGAAAGGAGAGAGC
Found at i:153350 original size:123 final size:123
Alignment explanation
Indices: 153190--153954 Score: 1004
Period size: 123 Copynumber: 6.2 Consensus size: 123
153180 AAAAGAGAGA
* *
153190 GCGTCCTACTCTTTGAGGACTGGAAAA--TGCCACCAACTTGTATGGGCTTTAAAAAGAAAAAGG
1 GCGTCCTGCTCTTTGAGGACT--AAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAAGG
* * *
153253 GATCCTGCACTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTT-AAAAGGAAAAG
64 G-TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAG
* * * *
153313 GTGTCCTGCTCCTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAAGGTA
1 GCGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAAGG-G
* *
153378 TCCTGCTCTTTGAGGACT-AAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAAAAAAAG
65 TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAG
** *
153436 GCGTCCTGCTCTTTGAGGACTAAAAGGGTGCCACCAACTCATGTGGGCTTTGAAAAGAAAAAAGA
1 GCGTCCTGCTCTTTGAGGACTAAAA-GGTGCCACCAACTTGTGTGGGCTTTAAAAAG-AAAAAG-
* * * *
153501 CGTCCTGCTCTTTGAGGACTAAATGGTGCCACCAACTCATGTGGGCTTTAAAAAGAAAAAG
63 GGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAG
* * ** * * *
153562 ACGTCATGCTCTTTGAGGACTGGAAGGTGCCACCAACTTATGTGGGCTTTCAAAA-AAAAAGACG
1 GCGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAAG-GG
* * *
153626 TCCTACTCTTTAAGGACTAAAGGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAG
65 TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAG
** * * *
153685 ATGTCCTGCTTTTTGAGGACTAAAAGGTGCCACCAACTTGTATGGGCTTTAAAAAGAAAAAGACG
1 GCGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAAG-GG
* * * * *
153750 TCCTACTCTTTGAGGACTAAAGGGTGCCACCAACTCATATGGACTTTGAAAAGAAAAAG
65 TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAG
* * *
153809 GTGTCCCGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTT-AAAAGGAAAAGGTG
1 GCGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAAGG-G
* *
153873 TCTTGCTCTTTAAGGACT-AAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAG
65 TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAG
153931 GCGTCCTGCTCTTTGAGGACTAAA
1 GCGTCCTGCTCTTTGAGGACTAAA
153955 GGGCTAAAAG
Statistics
Matches: 572, Mismatches: 60, Indels: 21
0.88 0.09 0.03
Matches are distributed among these distances:
121 4 0.01
122 86 0.15
123 237 0.41
124 137 0.24
125 52 0.09
126 56 0.10
ACGTcount: A:0.31, C:0.19, G:0.25, T:0.24
Consensus pattern (123 bp):
GCGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAAGGGT
CCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAG
Found at i:153956 original size:61 final size:62
Alignment explanation
Indices: 153190--153954 Score: 990
Period size: 62 Copynumber: 12.4 Consensus size: 62
153180 AAAAGAGAGA
* * *
153190 GCGTCCTACTCTTTGAGGACTGGAAAA--TGCCACCAACTTGTATGGGCTTTAAAAAGAAAAAG
1 GCGTCCTGCTCTTTGAGGACT--AAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAG
* *
153252 G-GATCCTGCACTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTT-AAAAGGAAAAG
1 GCG-TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAG
* *
153313 GTGTCCTGCTCCTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTT-AAAAGGAAAAAG
1 GCGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAA-GAAAAAG
** *
153375 GTATCCTGCTCTTTGAGGACT-AAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAAAAAAAG
1 GCGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAG
**
153436 GCGTCCTGCTCTTTGAGGACTAAAAGGGTGCCACCAACTCATGTGGGCTTTGAAAAGAAAAAAG
1 GCGTCCTGCTCTTTGAGGACTAAAA-GGTGCCACCAACTTGTGTGGGCTTTGAAAAG-AAAAAG
* * ** *
153500 ACGTCCTGCTCTTTGAGGACTAAATGGTGCCACCAACTCATGTGGGCTTTAAAAAGAAAAAG
1 GCGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAG
* * ** * *
153562 ACGTCATGCTCTTTGAGGACTGGAAGGTGCCACCAACTTATGTGGGCTTTCAAAA-AAAAAG
1 GCGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAG
* * * * *
153623 ACGTCCTACTCTTTAAGGACTAAAGGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAG
1 GCGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAG
** * * *
153685 ATGTCCTGCTTTTTGAGGACTAAAAGGTGCCACCAACTTGTATGGGCTTTAAAAAGAAAAAG
1 GCGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAG
* * * ** * *
153747 ACGTCCTACTCTTTGAGGACTAAAGGGTGCCACCAACTCATATGGACTTTGAAAAGAAAAAG
1 GCGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAG
* * *
153809 GTGTCCCGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTT-AAAAGGAAAAG
1 GCGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAG
* * * *
153870 GTGTCTTGCTCTTTAAGGACT-AAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAG
1 GCGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAG
153931 GCGTCCTGCTCTTTGAGGACTAAA
1 GCGTCCTGCTCTTTGAGGACTAAA
153955 GGGCTAAAAG
Statistics
Matches: 624, Mismatches: 67, Indels: 24
0.87 0.09 0.03
Matches are distributed among these distances:
60 31 0.05
61 222 0.36
62 284 0.46
63 58 0.09
64 29 0.05
ACGTcount: A:0.31, C:0.19, G:0.25, T:0.24
Consensus pattern (62 bp):
GCGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAG
Found at i:161715 original size:20 final size:20
Alignment explanation
Indices: 161687--161782 Score: 99
Period size: 20 Copynumber: 4.8 Consensus size: 20
161677 ATGTGTCAAT
161687 ACAATGTATCGATACAATGA
1 ACAATGTATCGATACAATGA
* *
161707 ACCATGTATCGATACAATTA
1 ACAATGTATCGATACAATGA
** *
161727 ACAATGTATC-A-A-TTTTA
1 ACAATGTATCGATACAATGA
*
161744 CCCAGATGTATCGATACAATGA
1 -ACA-ATGTATCGATACAATGA
161766 ACAATGTATCGATACAA
1 ACAATGTATCGATACAA
161783 ATTGTGAAAA
Statistics
Matches: 61, Mismatches: 10, Indels: 10
0.75 0.12 0.12
Matches are distributed among these distances:
17 3 0.05
18 3 0.05
19 8 0.13
20 42 0.69
21 3 0.05
22 2 0.03
ACGTcount: A:0.42, C:0.18, G:0.12, T:0.28
Consensus pattern (20 bp):
ACAATGTATCGATACAATGA
Found at i:162456 original size:61 final size:62
Alignment explanation
Indices: 162350--162978 Score: 811
Period size: 62 Copynumber: 10.3 Consensus size: 62
162340 AATGAAATGG
* * **
162350 GTCCTGCTCCTTTG-GGACTAG-AAGGTGCCTACCAACTTGTATGGGCTTTGCAAGGAGAAA-GC
1 GTCCTGCT-CTTTGAGGACTAGAAAAGTGCC-ACCAACTTGTGTGGGCTTTAAAAGGA-AAAGGC
* * *
162412 ATCCTACTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGC
1 GTCCTGCTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGC
* * * *
162473 ATCCTG-TGCTTTGAGGACTAGAAAACTACCACCGACTTGTGTGGGCTTTAAAAGGAAAAGGC
1 GTCCTGCT-CTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGC
* * * *
162535 GTTCTGCTCTTTGAAGACTAG-AAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGT
1 GTCCTGCTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGC
* *
162596 GTCTTGCTCTTTGAGGACTAG-AAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGC
1 GTCCTGCTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGC
* * * * *
162657 ATCTTGCTCTTTGAGGACTAGAAAAGTACCACCAACTTGTGTGGGCTTTAAAAAGAAAAGGT
1 GTCCTGCTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGC
* * *
162719 GTCCTGCTCTTCGAGAACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGT
1 GTCCTGCTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGC
* * *
162781 GTCTTGCTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGAGCTTTAAAAGAAAAAGGC
1 GTCCTGCTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGC
162843 GTCCTGCTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGC
1 GTCCTGCTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGC
* * * * * *
162905 ATCCTGCTCTTTGAGGACT-G-AAGGTGCCATCAGCTTATGTGAGCTTT-----G-AAAGGC
1 GTCCTGCTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGC
162959 GTCCTGCTCTTTGAGGACTA
1 GTCCTGCTCTTTGAGGACTA
162979 AACGATGAAA
Statistics
Matches: 510, Mismatches: 49, Indels: 23
0.88 0.08 0.04
Matches are distributed among these distances:
54 24 0.05
55 1 0.00
60 26 0.05
61 160 0.31
62 298 0.58
63 1 0.00
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.26
Consensus pattern (62 bp):
GTCCTGCTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGC
Found at i:166435 original size:21 final size:20
Alignment explanation
Indices: 166389--166441 Score: 72
Period size: 19 Copynumber: 2.6 Consensus size: 20
166379 GTAGCCAAAC
**
166389 TTGTATCGATACACCAAGTA
1 TTGTATCGATACACCAAAAA
166409 -TGTATCGATACACCAAAAAA
1 TTGTATCGATACACC-AAAAA
166429 TTGTATCGATACA
1 TTGTATCGATACA
166442 TTGGCTTGTA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
19 14 0.48
20 3 0.10
21 12 0.41
ACGTcount: A:0.40, C:0.19, G:0.13, T:0.28
Consensus pattern (20 bp):
TTGTATCGATACACCAAAAA
Found at i:170489 original size:15 final size:15
Alignment explanation
Indices: 170461--170500 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 15
170451 ATAAAAATGT
* *
170461 TCAAATTGAGGAAGC
1 TCAAAATGAAGAAGC
170476 TCAAAATGAAGAAGC
1 TCAAAATGAAGAAGC
*
170491 TCCAAATGAA
1 TCAAAATGAA
170501 ATTGATGAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.47, C:0.15, G:0.20, T:0.17
Consensus pattern (15 bp):
TCAAAATGAAGAAGC
Found at i:172590 original size:13 final size:13
Alignment explanation
Indices: 172572--172610 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
172562 ACATTTTTCT
172572 TTGTATCGATACA
1 TTGTATCGATACA
172585 TTGTATCGATACA
1 TTGTATCGATACA
*
172598 CTGTATCGATACA
1 TTGTATCGATACA
172611 GGGGGATTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:175199 original size:13 final size:13
Alignment explanation
Indices: 175181--175206 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
175171 TACACCAAGT
175181 ATGTATCGATACA
1 ATGTATCGATACA
175194 ATGTATCGATACA
1 ATGTATCGATACA
175207 CCAAAAAATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:175225 original size:34 final size:32
Alignment explanation
Indices: 175163--175227 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 32
175153 TAGCCAAACT
**
175163 TGTATCGATACACCAAGTATGTATCGATACAA
1 TGTATCGATACACCAAAAATGTATCGATACAA
175195 TGTATCGATACACCAAAAAATTGTATCGATACA
1 TGTATCGATACACC-AAAAA-TGTATCGATACA
175228 TTGGCTTGTA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
32 14 0.48
33 3 0.10
34 12 0.41
ACGTcount: A:0.40, C:0.18, G:0.14, T:0.28
Consensus pattern (32 bp):
TGTATCGATACACCAAAAATGTATCGATACAA
Found at i:178054 original size:13 final size:13
Alignment explanation
Indices: 178036--178060 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
178026 CAATTTGTGG
178036 TGTATCGATACAA
1 TGTATCGATACAA
178049 TGTATCGATACA
1 TGTATCGATACA
178061 TATTATGTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:178076 original size:32 final size:33
Alignment explanation
Indices: 178013--178080 Score: 104
Period size: 33 Copynumber: 2.1 Consensus size: 33
178003 TGTTACAAGC
*
178013 CAATGTATCGATACAATTTGTGGTGTATCGATA
1 CAATGTATCGATACAATTTATGGTGTATCGATA
178046 CAATGTATCGATAC-ATATTAT-GTGTATCGATA
1 CAATGTATCGATACAAT-TTATGGTGTATCGATA
178078 CAA
1 CAA
178081 ATTTGGCTAC
Statistics
Matches: 33, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
32 16 0.48
33 17 0.52
ACGTcount: A:0.34, C:0.13, G:0.18, T:0.35
Consensus pattern (33 bp):
CAATGTATCGATACAATTTATGGTGTATCGATA
Found at i:178159 original size:20 final size:21
Alignment explanation
Indices: 178112--178164 Score: 72
Period size: 20 Copynumber: 2.6 Consensus size: 21
178102 GCCAATGACC
**
178112 TGTATCGATACATCTTTTTCA
1 TGTATCGATACATCTTGGTCA
*
178133 AGTATCGATACAT-TTGGTCA
1 TGTATCGATACATCTTGGTCA
178153 TGTATCGATACA
1 TGTATCGATACA
178165 ATGTATCGAT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
20 16 0.57
21 12 0.43
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.40
Consensus pattern (21 bp):
TGTATCGATACATCTTGGTCA
Found at i:178170 original size:13 final size:13
Alignment explanation
Indices: 178152--178180 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
178142 ACATTTGGTC
178152 ATGTATCGATACA
1 ATGTATCGATACA
178165 ATGTATCGATACA
1 ATGTATCGATACA
178178 ATG
1 ATG
178181 CAATCTGTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.38, C:0.14, G:0.17, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:178191 original size:20 final size:20
Alignment explanation
Indices: 178166--178216 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
178156 ATCGATACAA
*
178166 TGTATCGATACAATGCAATC
1 TGTATCGATACAATGAAATC
* * *
178186 TGTATCGATACATTTAAATG
1 TGTATCGATACAATGAAATC
178206 TGTATCGATAC
1 TGTATCGATAC
178217 TTTTCAGGGT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.35
Consensus pattern (20 bp):
TGTATCGATACAATGAAATC
Found at i:180511 original size:20 final size:21
Alignment explanation
Indices: 180482--180522 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
180472 TGTTTTTGTT
180482 GATGATTTTG-A-TGAAAAAC
1 GATGATTTTGAAGTGAAAAAC
180501 GATGTATTTTGAAGTGAAAAAC
1 GATG-ATTTTGAAGTGAAAAAC
180523 AAGAAATTTG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 4 0.21
20 6 0.32
21 1 0.05
22 8 0.42
ACGTcount: A:0.41, C:0.05, G:0.22, T:0.32
Consensus pattern (21 bp):
GATGATTTTGAAGTGAAAAAC
Found at i:180672 original size:13 final size:13
Alignment explanation
Indices: 180654--180692 Score: 60
Period size: 13 Copynumber: 3.0 Consensus size: 13
180644 ATAAACCCCT
*
180654 TGTATCGATACAC
1 TGTATCGATACAA
*
180667 TGTATCGAAACAA
1 TGTATCGATACAA
180680 TGTATCGATACAA
1 TGTATCGATACAA
180693 AGAATTCTGT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.38, C:0.18, G:0.15, T:0.28
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:180906 original size:8 final size:8
Alignment explanation
Indices: 180893--180918 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
180883 AACATCATTC
180893 ATCACAAA
1 ATCACAAA
180901 ATCACAAA
1 ATCACAAA
180909 ATCACAAA
1 ATCACAAA
180917 AT
1 AT
180919 TTAATCAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.62, C:0.23, G:0.00, T:0.15
Consensus pattern (8 bp):
ATCACAAA
Found at i:185252 original size:9 final size:9
Alignment explanation
Indices: 185238--185268 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
185228 TCTGAGTCGC
*
185238 CATCATCAT
1 CATCATCTT
185247 CATCATCTT
1 CATCATCTT
185256 CATCATCTT
1 CATCATCTT
185265 CATC
1 CATC
185269 GTCCTTGATG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.26, C:0.35, G:0.00, T:0.39
Consensus pattern (9 bp):
CATCATCTT
Found at i:186900 original size:19 final size:20
Alignment explanation
Indices: 186860--186913 Score: 76
Period size: 20 Copynumber: 2.7 Consensus size: 20
186850 AAGCCAATGC
186860 ATCGATACAATTTGTGGTGT
1 ATCGATACAATTTGTGGTGT
186880 ATCGATAC-ATATTGT-GTGT
1 ATCGATACAAT-TTGTGGTGT
186899 ATCGATACGAATTTG
1 ATCGATAC-AATTTG
186914 GCTACTGCCA
Statistics
Matches: 31, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
19 14 0.45
20 15 0.48
21 2 0.06
ACGTcount: A:0.28, C:0.11, G:0.22, T:0.39
Consensus pattern (20 bp):
ATCGATACAATTTGTGGTGT
Found at i:186987 original size:20 final size:21
Alignment explanation
Indices: 186940--186992 Score: 72
Period size: 20 Copynumber: 2.6 Consensus size: 21
186930 GCCAATGACT
**
186940 TGTATCGATACATCTTTTTCA
1 TGTATCGATACATCTTAGTCA
*
186961 AGTATCGATACAT-TTAGTCA
1 TGTATCGATACATCTTAGTCA
186981 TGTATCGATACA
1 TGTATCGATACA
186993 ATGTATCGAT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
20 16 0.57
21 12 0.43
ACGTcount: A:0.30, C:0.17, G:0.13, T:0.40
Consensus pattern (21 bp):
TGTATCGATACATCTTAGTCA
Found at i:186998 original size:13 final size:13
Alignment explanation
Indices: 186980--187008 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
186970 ACATTTAGTC
186980 ATGTATCGATACA
1 ATGTATCGATACA
186993 ATGTATCGATACA
1 ATGTATCGATACA
187006 ATG
1 ATG
187009 CAATCTGTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.38, C:0.14, G:0.17, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:187019 original size:20 final size:20
Alignment explanation
Indices: 186994--187044 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
186984 ATCGATACAA
*
186994 TGTATCGATACAATGCAATC
1 TGTATCGATACAATGAAATC
* * *
187014 TGTATCGATACATTTAAATG
1 TGTATCGATACAATGAAATC
187034 TGTATCGATAC
1 TGTATCGATAC
187045 TTTTCAGGGT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.35
Consensus pattern (20 bp):
TGTATCGATACAATGAAATC
Found at i:195435 original size:4 final size:4
Alignment explanation
Indices: 195426--195464 Score: 60
Period size: 4 Copynumber: 9.8 Consensus size: 4
195416 TTTTGAGGTT
* *
195426 TTTA TTTA TTTA TTTA TTTA TTTA TTCA TTTA CTTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTT
195465 TGTTTTGTTT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
4 31 1.00
ACGTcount: A:0.23, C:0.05, G:0.00, T:0.72
Consensus pattern (4 bp):
TTTA
Found at i:198490 original size:13 final size:13
Alignment explanation
Indices: 198472--198496 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
198462 ATGTTGCATA
198472 GTATCGATACATT
1 GTATCGATACATT
198485 GTATCGATACAT
1 GTATCGATACAT
198497 GACCAAATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
GTATCGATACATT
Found at i:198529 original size:21 final size:20
Alignment explanation
Indices: 198484--198529 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
198474 ATCGATACAT
**
198484 TGTATCGATACATGACCAAA
1 TGTATCGATACATGAAAAAA
*
198504 TGTATCGATACTTGAAAAAGA
1 TGTATCGATACATGAAAAA-A
198525 TGTAT
1 TGTAT
198530 AAATACACGT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
20 16 0.73
21 6 0.27
ACGTcount: A:0.39, C:0.13, G:0.17, T:0.30
Consensus pattern (20 bp):
TGTATCGATACATGAAAAAA
Found at i:198595 original size:19 final size:20
Alignment explanation
Indices: 198571--198619 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
198561 GCCAAACTTA
**
198571 TATCGATACA-CACAGTATG
1 TATCGATACACCACAAAATG
*
198590 TATCGATACACCATAAAATG
1 TATCGATACACCACAAAATG
198610 TATCGATACA
1 TATCGATACA
198620 TTGGCTTGTA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
19 10 0.38
20 16 0.62
ACGTcount: A:0.41, C:0.20, G:0.12, T:0.27
Consensus pattern (20 bp):
TATCGATACACCACAAAATG
Found at i:200240 original size:9 final size:9
Alignment explanation
Indices: 200208--200238 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
200198 ATCAAGGACA
200208 ATGAAGATG
1 ATGAAGATG
200217 ATGAAGATG
1 ATGAAGATG
*
200226 ATGATGATG
1 ATGAAGATG
200235 ATGA
1 ATGA
200239 TGGTGACTCA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.42, C:0.00, G:0.32, T:0.26
Consensus pattern (9 bp):
ATGAAGATG
Found at i:204386 original size:13 final size:13
Alignment explanation
Indices: 204367--204405 Score: 51
Period size: 13 Copynumber: 3.0 Consensus size: 13
204357 ACAGCATTCT
204367 CTGTATCGATACA
1 CTGTATCGATACA
* *
204380 TTGTATCGATATA
1 CTGTATCGATACA
*
204393 CTATATCGATACA
1 CTGTATCGATACA
204406 AGGGGATTAT
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.33, C:0.18, G:0.13, T:0.36
Consensus pattern (13 bp):
CTGTATCGATACA
Found at i:204581 original size:22 final size:21
Alignment explanation
Indices: 204537--204579 Score: 63
Period size: 22 Copynumber: 2.1 Consensus size: 21
204527 CGAAATTCCT
204537 ATTTTTCACTTCAAAATACATC
1 ATTTTTCAC-TCAAAATACATC
204559 ATTTTTCA-TCAAAAT-CATC
1 ATTTTTCACTCAAAATACATC
204578 AT
1 AT
204580 CAAAAACAAG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 6 0.29
20 7 0.33
22 8 0.38
ACGTcount: A:0.37, C:0.21, G:0.00, T:0.42
Consensus pattern (21 bp):
ATTTTTCACTCAAAATACATC
Found at i:206884 original size:20 final size:20
Alignment explanation
Indices: 206837--206912 Score: 73
Period size: 20 Copynumber: 3.8 Consensus size: 20
206827 ATACACATTT
**
206837 AAATGTATCGATACATGTTGC
1 AAATGTATCGATACATG-AAC
* *
206858 ATA-GTATCGATACATGACC
1 AAATGTATCGATACATGAAC
* *
206877 AAATGTATCGATACTTGAAA
1 AAATGTATCGATACATGAAC
206897 AAGATGTATCGATACA
1 AA-ATGTATCGATACA
206913 AGTCATTGGC
Statistics
Matches: 45, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
19 3 0.07
20 28 0.62
21 14 0.31
ACGTcount: A:0.39, C:0.14, G:0.17, T:0.29
Consensus pattern (20 bp):
AAATGTATCGATACATGAAC
Found at i:206967 original size:17 final size:17
Alignment explanation
Indices: 206945--207005 Score: 76
Period size: 17 Copynumber: 3.7 Consensus size: 17
206935 TAGCCAAACT
206945 TGTATCGATACACAGTA
1 TGTATCGATACACAGTA
206962 TGTATCGAT--ACA-T-
1 TGTATCGATACACAGTA
206975 TGTATCGATACACACAGTA
1 TGTATCGAT--ACACAGTA
206994 TGTATCGATACA
1 TGTATCGATACA
207006 TTGTATTGAT
Statistics
Matches: 38, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
13 9 0.24
14 1 0.03
15 3 0.08
17 15 0.39
18 1 0.03
19 9 0.24
ACGTcount: A:0.34, C:0.18, G:0.16, T:0.31
Consensus pattern (17 bp):
TGTATCGATACACAGTA
Found at i:206978 original size:13 final size:13
Alignment explanation
Indices: 206962--207018 Score: 51
Period size: 13 Copynumber: 3.9 Consensus size: 13
206952 ATACACAGTA
206962 TGTATCGATACAT
1 TGTATCGATACAT
206975 TGTATCGATACACACAGT
1 TGTATCGAT----ACA-T
206993 ATGTATCGATACAT
1 -TGTATCGATACAT
*
207007 TGTATTGATACA
1 TGTATCGATACA
207019 CCATAAAATG
Statistics
Matches: 37, Mismatches: 1, Indels: 12
0.74 0.02 0.24
Matches are distributed among these distances:
13 20 0.54
14 1 0.03
15 3 0.08
17 3 0.08
18 1 0.03
19 9 0.24
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.35
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:206995 original size:32 final size:32
Alignment explanation
Indices: 206944--207041 Score: 137
Period size: 32 Copynumber: 3.1 Consensus size: 32
206934 GTAGCCAAAC
206944 TTGTATCGAT--ACACAGTATGTATCGATACA
1 TTGTATCGATACACACAGTATGTATCGATACA
206974 TTGTATCGATACACACAGTATGTATCGATACA
1 TTGTATCGATACACACAGTATGTATCGATACA
* * **
207006 TTGTATTGATACACCATAAAATGTATCGATACA
1 TTGTATCGATACA-CACAGTATGTATCGATACA
207039 TTG
1 TTG
207042 GCTTGTAACG
Statistics
Matches: 61, Mismatches: 4, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
30 10 0.16
32 32 0.52
33 19 0.31
ACGTcount: A:0.35, C:0.16, G:0.15, T:0.34
Consensus pattern (32 bp):
TTGTATCGATACACACAGTATGTATCGATACA
Found at i:209016 original size:14 final size:14
Alignment explanation
Indices: 208997--209024 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
208987 TGATCTGATC
208997 CCATTATTGGGAGA
1 CCATTATTGGGAGA
209011 CCATTATTGGGAGA
1 CCATTATTGGGAGA
209025 TTAAAGACTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.14, G:0.29, T:0.29
Consensus pattern (14 bp):
CCATTATTGGGAGA
Found at i:211653 original size:13 final size:13
Alignment explanation
Indices: 211628--211666 Score: 50
Period size: 11 Copynumber: 3.3 Consensus size: 13
211618 CAAAAAAGGA
211628 AAGAAAA-TCAAG
1 AAGAAAACTCAAG
211640 AAGAAAACTCAAG
1 AAGAAAACTCAAG
211653 -AG-AAACTCAA-
1 AAGAAAACTCAAG
211663 AAGA
1 AAGA
211667 CTAAGAAAGC
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
11 10 0.42
12 9 0.38
13 5 0.21
ACGTcount: A:0.64, C:0.13, G:0.15, T:0.08
Consensus pattern (13 bp):
AAGAAAACTCAAG
Found at i:212059 original size:16 final size:18
Alignment explanation
Indices: 212032--212065 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
212022 TATTTTCACA
212032 TTTATCTTATTTG-CTTT
1 TTTATCTTATTTGTCTTT
212049 TTTAT-TTATTTGTCTTT
1 TTTATCTTATTTGTCTTT
212066 AGTGTTTCTA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.12, C:0.09, G:0.06, T:0.74
Consensus pattern (18 bp):
TTTATCTTATTTGTCTTT
Found at i:216270 original size:2 final size:2
Alignment explanation
Indices: 216263--216287 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
216253 ATAAATAAGA
216263 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
216288 GTTTAATTTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:216612 original size:36 final size:36
Alignment explanation
Indices: 216565--216636 Score: 126
Period size: 36 Copynumber: 2.0 Consensus size: 36
216555 TTCTTTGGCG
*
216565 TCAACAAACGAAACCATGACCACAACATAATTATCC
1 TCAACAAACGAAACCATGACCACAACAAAATTATCC
*
216601 TCAACAAACGAAACCATGACCACGACAAAATTATCC
1 TCAACAAACGAAACCATGACCACAACAAAATTATCC
216637 AATTCCATAA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.47, C:0.31, G:0.07, T:0.15
Consensus pattern (36 bp):
TCAACAAACGAAACCATGACCACAACAAAATTATCC
Found at i:219034 original size:165 final size:165
Alignment explanation
Indices: 218753--219271 Score: 617
Period size: 166 Copynumber: 3.1 Consensus size: 165
218743 ATTTAATTAC
* * * *
218753 CATTTAATCAGTTTTAAAAAATTCATTTATTTTCATGAGTTGTTTC--TTTTTCCTTAAAATTCT
1 CATTAAATCAGTTTTGAAAAATTTATTTATTTTCTTGAGTT-TTTCATTTTTTCCTTAAAATTCT
* * *
218816 CCTGTTTTCAAAAAATCGAGTTTTCTATTCCATAAATGTTTTCG-AGAGGA-TTTTCTCAGTTTA
65 TCTATTTTCGAAAAATCGAGTTTTCTATTCCATAAAT-TTTTCGAAG-GGATTTTTCTCAGTTTA
218879 AAATTTTTAAAATTCATCTAATATTGTCATTAAATTCA
128 AAATTTTTAAAATTCATCTAATATTGTCATTAAATTCA
* *
218917 TATTAAATCAGTTTTGAAAAATTTATTTATTTTCTTGAGTTTTTCATTTTTTCCTTAAAATTTTT
1 CATTAAATCAGTTTTGAAAAATTTATTTATTTTCTTGAGTTTTTCATTTTTTCCTTAAAATTCTT
** * * * *
218982 CTATTCCCGAAAAATTGAATTTTCTATTCCATAAATATTTTCGAAGGGATTTTTTTCGGTTTAAA
66 CTATTTTCGAAAAATCGAGTTTTCTATTCCATAAAT-TTTTCGAAGGGATTTTTCTCAGTTTAAA
*
219047 ATTTTTAAAATTCATCTAATATTGTCATTAAGTTCA
130 ATTTTTAAAATTCATCTAATATTGTCATTAAATTCA
* * ** *
219083 CATTAAATTAGTTTTGAAAACTTTATTTATTTTCTTGAG-TTTTCATTTTTTTTTTTGTGAAATT
1 CATTAAATCAGTTTTGAAAAATTTATTTATTTTCTTGAGTTTTTCA--TTTTTTCCT-TAAAATT
* * ** *
219147 CCTT-TATTTTCGAAAAA-CGACGTTTTCT-TCTCCAT-AATTTTACAAAAAGATTTTTCTTAGT
63 -CTTCTATTTTCGAAAAATCGA-GTTTTCTAT-TCCATAAATTTTTCGAAGGGATTTTTCTCAGT
* *
219208 TTATAATTTTTAAAATTCATCTAATATTGTTATTAAATTCA
125 TTAAAATTTTTAAAATTCATCTAATATTGTCATTAAATTCA
219249 CATTAAATCAGTTTT-AAACAATT
1 CATTAAATCAGTTTTGAAA-AATT
219272 CAAAATATTT
Statistics
Matches: 304, Mismatches: 40, Indels: 20
0.84 0.11 0.05
Matches are distributed among these distances:
163 4 0.01
164 36 0.12
165 64 0.21
166 157 0.52
167 13 0.04
168 28 0.09
169 2 0.01
ACGTcount: A:0.31, C:0.12, G:0.08, T:0.49
Consensus pattern (165 bp):
CATTAAATCAGTTTTGAAAAATTTATTTATTTTCTTGAGTTTTTCATTTTTTCCTTAAAATTCTT
CTATTTTCGAAAAATCGAGTTTTCTATTCCATAAATTTTTCGAAGGGATTTTTCTCAGTTTAAAA
TTTTTAAAATTCATCTAATATTGTCATTAAATTCA
Found at i:219762 original size:36 final size:37
Alignment explanation
Indices: 219707--219779 Score: 114
Period size: 36 Copynumber: 2.0 Consensus size: 37
219697 GTTGAAATCA
219707 GCCCCTTGGCCATTCCTT-CCCTTTCAAATAAGGGAAG
1 GCCCCTTGGCCATTCCTTCCCCTTT-AAATAAGGGAAG
*
219744 GCCCCTTGG-CATTCCTTCCCCTTTAAATAGGGGAAG
1 GCCCCTTGGCCATTCCTTCCCCTTTAAATAAGGGAAG
219780 AAAGCTTCAT
Statistics
Matches: 34, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
36 19 0.56
37 15 0.44
ACGTcount: A:0.21, C:0.32, G:0.21, T:0.27
Consensus pattern (37 bp):
GCCCCTTGGCCATTCCTTCCCCTTTAAATAAGGGAAG
Found at i:220459 original size:13 final size:13
Alignment explanation
Indices: 220438--220468 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
220428 CGATACATGG
*
220438 TACAATGTATCGA
1 TACATTGTATCGA
220451 TACATTGTATCGA
1 TACATTGTATCGA
220464 TACAT
1 TACAT
220469 GAAGAAATAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.35, C:0.16, G:0.13, T:0.35
Consensus pattern (13 bp):
TACATTGTATCGA
Found at i:220482 original size:33 final size:33
Alignment explanation
Indices: 220422--220488 Score: 93
Period size: 33 Copynumber: 2.0 Consensus size: 33
220412 CTATCACTAT
*
220422 TTGTATCGATACATGGTACAATGTATCGATACA
1 TTGTATCGATACATGGTACAATATATCGATACA
220455 TTGTATCGATACATGAAG-A-AATATATCGATACA
1 TTGTATCGATACATG--GTACAATATATCGATACA
220488 T
1 T
220489 AGCTTGTAAC
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
33 29 0.94
34 1 0.03
35 1 0.03
ACGTcount: A:0.37, C:0.13, G:0.16, T:0.33
Consensus pattern (33 bp):
TTGTATCGATACATGGTACAATATATCGATACA
Found at i:226639 original size:13 final size:13
Alignment explanation
Indices: 226621--226662 Score: 66
Period size: 13 Copynumber: 3.2 Consensus size: 13
226611 ACAACATTCC
226621 TTGTATCGATACA
1 TTGTATCGATACA
226634 TTGTATCGATACA
1 TTGTATCGATACA
* *
226647 ATGTATAGATACA
1 TTGTATCGATACA
226660 TTG
1 TTG
226663 GGTACTATTT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 26 1.00
ACGTcount: A:0.33, C:0.12, G:0.17, T:0.38
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:228549 original size:18 final size:20
Alignment explanation
Indices: 228510--228550 Score: 59
Period size: 18 Copynumber: 2.1 Consensus size: 20
228500 TAAATTTTTT
*
228510 ATATAAAAAGAGGGGAGTAG
1 ATATAAAAAGAGGGGAGAAG
228530 ATATAAAAA-A-GGGAGAAG
1 ATATAAAAAGAGGGGAGAAG
228548 ATA
1 ATA
228551 ATCGTTTAAG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 10 0.50
19 1 0.05
20 9 0.45
ACGTcount: A:0.56, C:0.00, G:0.29, T:0.15
Consensus pattern (20 bp):
ATATAAAAAGAGGGGAGAAG
Found at i:229175 original size:13 final size:13
Alignment explanation
Indices: 229157--229200 Score: 52
Period size: 13 Copynumber: 3.1 Consensus size: 13
229147 ACATGCTGCT
229157 TTGTATCGATACA
1 TTGTATCGATACA
229170 TTGTATCGATATGTTCA
1 TTGTATCGATA----CA
229187 TTGTATCGATACA
1 TTGTATCGATACA
229200 T
1 T
229201 GGCCAAATTG
Statistics
Matches: 27, Mismatches: 0, Indels: 8
0.77 0.00 0.23
Matches are distributed among these distances:
13 14 0.52
17 13 0.48
ACGTcount: A:0.27, C:0.14, G:0.16, T:0.43
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:231260 original size:26 final size:24
Alignment explanation
Indices: 231223--231279 Score: 71
Period size: 25 Copynumber: 2.3 Consensus size: 24
231213 ATGATTTTTT
*
231223 AATAAAAT-AAAATAAAATTAAATA
1 AATATAATCAAAATAAAA-TAAATA
*
231247 AATACTAATCAAAATAAAATGAATA
1 AATA-TAATCAAAATAAAATAAATA
231272 AATATAAT
1 AATATAAT
231280 TTTAAAAATA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
24 8 0.28
25 12 0.41
26 9 0.31
ACGTcount: A:0.68, C:0.04, G:0.02, T:0.26
Consensus pattern (24 bp):
AATATAATCAAAATAAAATAAATA
Found at i:232145 original size:20 final size:20
Alignment explanation
Indices: 232116--232169 Score: 90
Period size: 20 Copynumber: 2.7 Consensus size: 20
232106 TACCCAGATG
232116 TATCGATACATTGTTCATTA
1 TATCGATACATTGTTCATTA
* *
232136 TATTGATACATTGTTCATTG
1 TATCGATACATTGTTCATTA
232156 TATCGATACATTGT
1 TATCGATACATTGT
232170 ATCGATACAT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.28, C:0.13, G:0.13, T:0.46
Consensus pattern (20 bp):
TATCGATACATTGTTCATTA
Found at i:232169 original size:13 final size:13
Alignment explanation
Indices: 232151--232180 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
232141 ATACATTGTT
232151 CATTGTATCGATA
1 CATTGTATCGATA
232164 CATTGTATCGATA
1 CATTGTATCGATA
232177 CATT
1 CATT
232181 CTGGGTTTAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.30, C:0.17, G:0.13, T:0.40
Consensus pattern (13 bp):
CATTGTATCGATA
Found at i:234635 original size:79 final size:79
Alignment explanation
Indices: 234498--234643 Score: 195
Period size: 79 Copynumber: 1.8 Consensus size: 79
234488 TTTCATCTCG
* * *
234498 GGGATACTCCAACCTCGGTTTTATTTCCAAAACATCAATTTTTCATAATCAGAGATACTCCAATC
1 GGGATACTCCAACCTCGGCTTTATTTCCAAAACATCAATTTCTCACAATCAGAGATACTCCAATC
234563 CCGTTATTTCCAAA
66 CCGTTATTTCCAAA
* * ** * *
234577 GGGATACTCCAACC-CTGGCTTTATTTCTAAAATATTGATTTCTCACAATCGGGGATACTCCAAT
1 GGGATACTCCAACCTC-GGCTTTATTTCCAAAACATCAATTTCTCACAATCAGAGATACTCCAAT
234641 CCC
65 CCC
234644 AATTTTATTC
Statistics
Matches: 57, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
78 1 0.02
79 56 0.98
ACGTcount: A:0.29, C:0.26, G:0.12, T:0.32
Consensus pattern (79 bp):
GGGATACTCCAACCTCGGCTTTATTTCCAAAACATCAATTTCTCACAATCAGAGATACTCCAATC
CCGTTATTTCCAAA
Found at i:234710 original size:79 final size:76
Alignment explanation
Indices: 234627--234851 Score: 274
Period size: 79 Copynumber: 2.9 Consensus size: 76
234617 TCTCACAATC
*
234627 GGGGATACTCCAATCCCAATTTTATTCTCAAAACACCAATTTTTCACAATC-GGAGATACTCCAA
1 GGGGATACTCCAA-CCCGATTTTATT-TCAAAACACCAATTTTTCACAATCAGG-GATACTCCAA
234691 TCCCGTTATTTTCGA
63 -CCCGTTATTTTCGA
* *
234706 GGGGATACTCCAACCCCGGTTTTATTTCTAAAACACCAATTTTTCACAATCAGGGATACTCTAAC
1 GGGGATACTCCAA-CCCGATTTTATTTC-AAAACACCAATTTTTCACAATCAGGGATACTCCAAC
*
234771 CCTGCTATTTTCGA
64 CC-GTTATTTTCGA
* * * *
234785 GGGGATACTCCAACCCTGATTTTATTTTCAGAACGCCGA-TTTTCTATAATCAGGGATACTCCAA
1 GGGGATACTCCAACCC-GATTTTA-TTTCAAAACACCAATTTTTC-ACAATCAGGGATACTCCAA
234849 CCC
63 CCC
234852 CGTTGTTATC
Statistics
Matches: 129, Mismatches: 11, Indels: 12
0.85 0.07 0.08
Matches are distributed among these distances:
78 13 0.10
79 110 0.85
80 6 0.05
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.31
Consensus pattern (76 bp):
GGGGATACTCCAACCCGATTTTATTTCAAAACACCAATTTTTCACAATCAGGGATACTCCAACCC
GTTATTTTCGA
Found at i:234730 original size:130 final size:130
Alignment explanation
Indices: 234495--234771 Score: 369
Period size: 130 Copynumber: 2.1 Consensus size: 130
234485 ATTTTTCATC
** * *
234495 TCGGGGATACTCCAACCTCGGTTTTATTTCCAAAACATCAATTTTTCATAATCAGAGATACTCCA
1 TCGGGGATACTCCAACCTCAATTTTATTTCCAAAACACCAATTTTTCACAATCAGAGATACTCCA
* * ***
234560 ATCCCGTTATTTCCAAAGGGATACTCCAACCCTGGCTTTATTTCTAAAATATTGATTTCTCACAA
66 ATCCCGTTATTTCCAAAGGGATACTCCAACCCCGGCTTTATTTCTAAAACACCAATTTCTCACAA
*
234625 TCGGGGATACTCCAATCC-CAATTTTA-TTCTCAAAACACCAATTTTTCACAATCGGAGATACTC
1 TCGGGGATACTCCAA-CCTCAATTTTATTTC-CAAAACACCAATTTTTCACAATCAGAGATACTC
* * * * *
234688 CAATCCCGTTATTTTCGAGGGGATACTCCAACCCCGGTTTTATTTCTAAAACACCAATTTTTCAC
64 CAATCCCGTTATTTCCAAAGGGATACTCCAACCCCGGCTTTATTTCTAAAACACCAATTTCTCAC
234753 AA
129 AA
* *
234755 TCAGGGATACTCTAACC
1 TCGGGGATACTCCAACC
234772 CTGCTATTTT
Statistics
Matches: 128, Mismatches: 17, Indels: 5
0.85 0.11 0.03
Matches are distributed among these distances:
129 5 0.04
130 121 0.95
131 2 0.02
ACGTcount: A:0.30, C:0.26, G:0.12, T:0.32
Consensus pattern (130 bp):
TCGGGGATACTCCAACCTCAATTTTATTTCCAAAACACCAATTTTTCACAATCAGAGATACTCCA
ATCCCGTTATTTCCAAAGGGATACTCCAACCCCGGCTTTATTTCTAAAACACCAATTTCTCACAA
Found at i:236330 original size:151 final size:150
Alignment explanation
Indices: 235829--236751 Score: 794
Period size: 151 Copynumber: 6.1 Consensus size: 150
235819 TCTATTAGTA
** * * * *
235829 TTTTTCCCAAAACCTAGT-TCTATAAGACTACTGGGTTCGCTTCTACGCTGAATGTATAAATTAG
1 TTTTTCCTGAAACCTAGTCT-TATAAAACTACCGGGTTCGCTTCTACGCCGAAGGTATAAATTAG
* * * * *
235893 AAGTGGGTTTGTTTTTACTTTTCCAATTCCCTTAGGATCA-CTGGGCACTTCTAAGTAAATGGTA
65 GAGTGGGTTTGTTTTTACTTTTCCAAGTCCTTTAGGATCATC-AGGCACTTCTAAGTCAATGGTA
235957 GACCTTAGGGATAC-TTTAGCAT
129 GACCTTAGGGA-ACTTTTAGCAT
* * * * * * * * * * *
235979 TTTCTT-C-AAAACTTTGT-TCTCTAAGACTACCGAG-TC-CATTCTATGTCAAAGGTATGAACT
1 TTT-TTCCTGAAACCTAGTCT-TATAAAACTACCGGGTTCGC-TTCTACGCCGAAGGTATAAATT
* * * * * * * *
236039 AGGAATGGGCTTGTTTTTACTTTTTCAAGTCCCTTAGGATCCT-TGAGCACTTCTAAATCGATGG
63 AGGAGTGGGTTTGTTTTTACTTTTCCAAGTCCTTTAGGATCATCAG-GCACTTCTAAGTCAATGG
*
236103 TTA-ACCTTAGGGATA-TGTTAGCA-
127 -TAGACCTTAGGGA-ACTTTTAGCAT
* * * ** ** *
236126 TTTTCCCCGAAACCTAGTCCTATAAAACTACCGGG-TCTTTTTCTACATCGAAGTTATAAATTAG
1 TTTTTCCTGAAACCTAGTCTTATAAAACTACCGGGTTC-GCTTCTACGCCGAAGGTATAAATTAG
* * * *
236190 GAGTTGGTTTGTTTATATCTTTTCCAAGTCCTTTAGAATCATTAGGCACTTCTAAGTCAATGGTA
65 GAGTGGGTTTGTTTTTA-CTTTTCCAAGTCCTTTAGGATCATCAGGCACTTCTAAGTCAATGGTA
* * *
236255 GACCTTAGGGACCTTTTAACAG
129 GACCTTAGGGAACTTTTAGCAT
* * * * *
236277 TTTTTCCTGAAACCTAGTCTTATAAAACTATCGGGTTTGCTTCTATGCCGAAGTTATGAATTAGG
1 TTTTTCCTGAAACCTAGTCTTATAAAACTACCGGGTTCGCTTCTACGCCGAAGGTATAAATTAGG
* * * *
236342 AGTGGGTTTGTTTATATCTTTTCCAAGTCCTTTAGGATCATCGGGCATTTCTAAGTCGATGGTAG
66 AGTGGGTTTGTTTTTA-CTTTTCCAAGTCCTTTAGGATCATCAGGCACTTCTAAGTCAATGGTAG
236407 ACCTTAGGGAACTTTTAGCATT
130 ACCTTAGGGAACTTTTAGCA-T
* * ** ** * * *
236429 TTTTTCCTGAATCTTAGTCTTATAAAGTTACTAGGTTCGCTTCTACGCCGAAGGTATGAATCAGA
1 TTTTTCCTGAAACCTAGTCTTATAAAACTACCGGGTTCGCTTCTACGCCGAAGGTATAAATTAGG
* * * *
236494 AGTGGGTTTGTTTTTACTTTTTCAAGTCCTCTAGGATCATCAGGAACTTCTAAGTCAATAGTAGA
66 AGTGGGTTTGTTTTTACTTTTCCAAGTCCTTTAGGATCATCAGGCACTTCTAAGTCAATGGTAGA
* *
236559 GCTTAGGGACCTTTTAGCAT
131 CCTTAGGGAACTTTTAGCAT
* * * * * *
236579 TTTTTCCCTCGAAACCTAGTCCTATAAAACTACCGGGTCCACTTCTATGCCAAAGGTATAAATTT
1 TTTTT-CCT-GAAACCTAGTCTTATAAAACTACCGGGTTCGCTTCTACGCCGAAGGTATAAATTA
* * * * ** * *
236644 GGAATAGGTTCGTTTTTATCTTTTTCAAGTTTTTTAGGATC-TCCGAACACTTCTAAGTCAATGG
64 GGAGTGGGTTTGTTTTTA-CTTTTCCAAGTCCTTTAGGATCATCAG-GCACTTCTAAGTCAATGG
* *
236708 TAGACTTTAGGGAACTTTTCATCAT
127 TAGACCTTAGGGAACTTTT-AGCAT
**
236733 TTTTTCCCAAAACCTAGTC
1 TTTTTCCTGAAACCTAGTC
236752 CTGTGAAACA
Statistics
Matches: 625, Mismatches: 125, Indels: 44
0.79 0.16 0.06
Matches are distributed among these distances:
146 1 0.00
147 6 0.01
148 107 0.17
149 57 0.09
150 62 0.10
151 194 0.31
152 137 0.22
153 52 0.08
154 9 0.01
ACGTcount: A:0.26, C:0.19, G:0.18, T:0.37
Consensus pattern (150 bp):
TTTTTCCTGAAACCTAGTCTTATAAAACTACCGGGTTCGCTTCTACGCCGAAGGTATAAATTAGG
AGTGGGTTTGTTTTTACTTTTCCAAGTCCTTTAGGATCATCAGGCACTTCTAAGTCAATGGTAGA
CCTTAGGGAACTTTTAGCAT
Found at i:236682 original size:304 final size:300
Alignment explanation
Indices: 235829--236753 Score: 942
Period size: 304 Copynumber: 3.1 Consensus size: 300
235819 TCTATTAGTA
* * * * * *
235829 TTTTT-CCCAAAACCTAGTTCTATAAGACTACTGGGTTCGCTTCTACGCTGAATGTATAAATTAG
1 TTTTTCCCCGAAACCTAGTCCTATAAAACTACTAGGTTCGCTTCTACGCCGAAGGTATAAATTAG
* * *
235893 AAGTGGGTTTGTTTTTACTTTTCCAATTCC-CTTAGGATCA-CTGGGCACTTCTAAGTAAATGGT
66 AAGTGGGTTTGTTTTTACTTTTCCAAGTCCTC-TAGGATCATC-AGGCACTTCTAAGTCAATGGT
* * * * * * * * *
235956 AGACCTTAGGGATAC-TTTAGCA-TTTTCTTCAAAACTTTGTTCTCTAAGACTACCGAGTCCA-T
129 AGACCTTAGGGA-CCTTTTAGCATTTTTCCTCGAAACCTAGTCCTATAAAACTACCGGGTCCACT
* * *
236018 TCTATGTCAAAGGTATGAACTAGGAATGGGCTTGTTTTTA-CTTTTTCAAGTCCCTTAGGATCCT
193 TCTATGCCAAAGGTATGAATTAGGAATGGG-TTGTTTTTATCTTTTTCAAGTCCTTTAGGAT-CT
* * *
236082 TGAGCACTTCTAAATCGATGGTTA-ACCTTAGGGATA-TGTTAGCA-
256 CGAGCACTTCTAAGTCGATGG-TAGACCTTAGGGA-ACTTTTAGCAT
* * ** ** *
236126 -TTTTCCCCGAAACCTAGTCCTATAAAACTAC-CGGGTCTTTTTCTACATCGAAGTTATAAATTA
1 TTTTTCCCCGAAACCTAGTCCTATAAAACTACTAGGTTC-GCTTCTACGCCGAAGGTATAAATTA
* * * * * *
236189 GGAGTTGGTTTGTTTATATCTTTTCCAAGTCCTTTAGAATCATTAGGCACTTCTAAGTCAATGGT
65 GAAGTGGGTTTGTTTTTA-CTTTTCCAAGTCCTCTAGGATCATCAGGCACTTCTAAGTCAATGGT
* * * ***
236254 AGACCTTAGGGACCTTTTAACAGTTTTTCCT-GAAACCTAGTCTTATAAAACTATCGGGTTTGCT
129 AGACCTTAGGGACCTTTTAGCA-TTTTTCCTCGAAACCTAGTCCTATAAAACTACCGGGTCCACT
* * * * *
236318 TCTATGCCGAAGTTATGAATTAGGAGTGGGTTTGTTTATATCTTTTCCAAGTCCTTTAGGATCAT
193 TCTATGCCAAAGGTATGAATTAGGAATGGG-TTGTTTTTATCTTTTTCAAGTCCTTTAGGATC-T
* *
236383 CGGGCATTTCTAAGTCGATGGTAGACCTTAGGGAACTTTTAGCAT
256 CGAGCACTTCTAAGTCGATGGTAGACCTTAGGGAACTTTTAGCAT
* * * * * ** * *
236428 TTTTTTCCTGAATCTTAGTCTTATAAAGTTACTAGGTTCGCTTCTACGCCGAAGGTATGAATCAG
1 TTTTTCCCCGAAACCTAGTCCTATAAAACTACTAGGTTCGCTTCTACGCCGAAGGTATAAATTAG
* * *
236493 AAGTGGGTTTGTTTTTACTTTTTCAAGTCCTCTAGGATCATCAGGAACTTCTAAGTCAATAGTAG
66 AAGTGGGTTTGTTTTTACTTTTCCAAGTCCTCTAGGATCATCAGGCACTTCTAAGTCAATGGTAG
*
236558 AGCTTAGGGACCTTTTAGCATTTTTTCCCTCGAAACCTAGTCCTATAAAACTACCGGGTCCACTT
131 ACCTTAGGGACCTTTTAGCA-TTTTT-CCTCGAAACCTAGTCCTATAAAACTACCGGGTCCACTT
* * * **
236623 CTATGCCAAAGGTATAAATTTGGAATAGGTTCGTTTTTATCTTTTTCAAGTTTTTTAGGATCTCC
194 CTATGCCAAAGGTATGAATTAGGAATGGGTT-GTTTTTATCTTTTTCAAGTCCTTTAGGATCT-C
* * * *
236688 GAACACTTCTAAGTCAATGGTAGACTTTAGGGAACTTTTCATCAT
257 GAGCACTTCTAAGTCGATGGTAGACCTTAGGGAACTTTT-AGCAT
*
236733 TTTTT-CCCAAAACCTAGTCCT
1 TTTTTCCCCGAAACCTAGTCCT
236754 GTGAAACAAC
Statistics
Matches: 503, Mismatches: 104, Indels: 35
0.78 0.16 0.05
Matches are distributed among these distances:
296 8 0.02
297 57 0.11
298 56 0.11
299 19 0.04
300 44 0.09
301 54 0.11
302 65 0.13
303 63 0.13
304 128 0.25
305 9 0.02
ACGTcount: A:0.26, C:0.19, G:0.18, T:0.37
Consensus pattern (300 bp):
TTTTTCCCCGAAACCTAGTCCTATAAAACTACTAGGTTCGCTTCTACGCCGAAGGTATAAATTAG
AAGTGGGTTTGTTTTTACTTTTCCAAGTCCTCTAGGATCATCAGGCACTTCTAAGTCAATGGTAG
ACCTTAGGGACCTTTTAGCATTTTTCCTCGAAACCTAGTCCTATAAAACTACCGGGTCCACTTCT
ATGCCAAAGGTATGAATTAGGAATGGGTTGTTTTTATCTTTTTCAAGTCCTTTAGGATCTCGAGC
ACTTCTAAGTCGATGGTAGACCTTAGGGAACTTTTAGCAT
Found at i:239447 original size:21 final size:21
Alignment explanation
Indices: 239423--239462 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
239413 GTGATATTTA
239423 TCATGTCATATCTT-TGTTGAT
1 TCATGTCATAT-TTATGTTGAT
*
239444 TCATGTTATATTTATGTTG
1 TCATGTCATATTTATGTTG
239463 TTTTCTGTGG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 2 0.12
21 15 0.88
ACGTcount: A:0.20, C:0.10, G:0.15, T:0.55
Consensus pattern (21 bp):
TCATGTCATATTTATGTTGAT
Found at i:241702 original size:10 final size:10
Alignment explanation
Indices: 241687--241723 Score: 67
Period size: 10 Copynumber: 3.8 Consensus size: 10
241677 AATTTTCTTT
241687 TTCTTTTTCC
1 TTCTTTTTCC
241697 TTCTTTTTCC
1 TTCTTTTTCC
241707 TTCTTTTTCC
1 TTCTTTTTCC
241717 TT-TTTTT
1 TTCTTTTT
241724 GTTTTTTGGT
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 5 0.19
10 22 0.81
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (10 bp):
TTCTTTTTCC
Found at i:242589 original size:12 final size:13
Alignment explanation
Indices: 242565--242597 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
242555 TTGGATGAAA
*
242565 GTAATGTATGTAT
1 GTAATGCATGTAT
242578 GT-ATGCATGTAT
1 GTAATGCATGTAT
242590 GTAATGCA
1 GTAATGCA
242598 AACAAATATA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.30, C:0.06, G:0.24, T:0.39
Consensus pattern (13 bp):
GTAATGCATGTAT
Found at i:242900 original size:2 final size:2
Alignment explanation
Indices: 242893--242932 Score: 71
Period size: 2 Copynumber: 20.0 Consensus size: 2
242883 GAATGAATGC
*
242893 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AG AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
242933 TCATGTATGT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (2 bp):
AT
Found at i:244434 original size:85 final size:83
Alignment explanation
Indices: 244223--244563 Score: 402
Period size: 85 Copynumber: 4.0 Consensus size: 83
244213 ATGAAAGTGG
* *
244223 TTACCCAAGACTAAGTCGATAGGTAAACAAAGGATAAAGAAGTTGATCGGGATTGAACCA-ATAA
1 TTACCCAAGACTAAGTCGATAGGTAAAAAAAGGATAAAGAAGTTGAT-GGGATTGAA-CAGACAA
*
244287 GTCAACAAAAGATAAAAGA-
64 GTCAACAAAGGATAAAAGAT
* * * * *
244306 TTACCCAAGACAAAATCGATAGGTAAAAAATGAATAAAGAAGTTGAGTGGGATTGAATAGACAAG
1 TTACCCAAGACTAAGTCGATAGGTAAAAAAAGGATAAAGAAGTTGA-TGGGATTGAACAGACAAG
* *
244371 TTAACAAATGATAAAAGGAT
65 TCAACAAAGGATAAAA-GAT
** *
244391 TTACCCGGGACTAAGTCGATAGGTAAAAAAAGGATAAAGAAGTTGATTGGGATTAAATC-GACAA
1 TTACCCAAGACTAAGTCGATAGGTAAAAAAAGGATAAAGAAGTTGA-TGGGATTGAA-CAGACAA
244455 GTCAACAAAGGATAAAAGGAT
64 GTCAACAAAGGATAAAA-GAT
* * * * *
244476 TTACCCTAGACTAAG-CTGACAGGTAAACAAAGGATAAAGAAGTTGACTGGGATTGAACCGAGAA
1 TTACCCAAGACTAAGTC-GATAGGTAAAAAAAGGATAAAGAAGTTGA-TGGGATTGAACAGACAA
244540 GTCAACAAAGGATTAAAAGAT
64 GTCAACAAAGGA-TAAAAGAT
244561 TTA
1 TTA
244564 ATAGGTAAAC
Statistics
Matches: 223, Mismatches: 27, Indels: 14
0.84 0.10 0.05
Matches are distributed among these distances:
82 1 0.00
83 68 0.30
84 5 0.02
85 144 0.65
86 5 0.02
ACGTcount: A:0.46, C:0.11, G:0.22, T:0.20
Consensus pattern (83 bp):
TTACCCAAGACTAAGTCGATAGGTAAAAAAAGGATAAAGAAGTTGATGGGATTGAACAGACAAGT
CAACAAAGGATAAAAGAT
Found at i:244466 original size:42 final size:42
Alignment explanation
Indices: 244339--244552 Score: 121
Period size: 42 Copynumber: 5.0 Consensus size: 42
244329 TAAAAAATGA
* * * * *
244339 ATAAAGAAGTTGAGTGGGATTGAATAGACAAGTTAACAAATG
1 ATAAAGAAGTTGACTGGGATTAAATCGACAAGTAAACAAAGG
* * * * * * * *
244381 ATAAA-AGGATTTACCCGGGACTAAGTCGATAGGTAAAAAAAGG
1 ATAAAGAAG-TTGA-CTGGGATTAAATCGACAAGTAAACAAAGG
* *
244424 ATAAAGAAGTTGATTGGGATTAAATCGACAAGTCAACAAAGG
1 ATAAAGAAGTTGACTGGGATTAAATCGACAAGTAAACAAAGG
* * * * * *
244466 ATAAA-AGGATTTACCCT-AGACT-AAGCTGACAGGTAAACAAAGG
1 ATAAAGAAG-TTGA--CTGGGATTAAATC-GACAAGTAAACAAAGG
* * * *
244509 ATAAAGAAGTTGACTGGGATTGAACCGAGAAGTCAACAAAGG
1 ATAAAGAAGTTGACTGGGATTAAATCGACAAGTAAACAAAGG
244551 AT
1 AT
244553 TAAAAGATTT
Statistics
Matches: 123, Mismatches: 39, Indels: 20
0.68 0.21 0.11
Matches are distributed among these distances:
41 6 0.05
42 58 0.47
43 54 0.44
44 5 0.04
ACGTcount: A:0.44, C:0.11, G:0.25, T:0.20
Consensus pattern (42 bp):
ATAAAGAAGTTGACTGGGATTAAATCGACAAGTAAACAAAGG
Found at i:244591 original size:27 final size:29
Alignment explanation
Indices: 244543--244596 Score: 76
Period size: 28 Copynumber: 1.9 Consensus size: 29
244533 CCGAGAAGTC
* *
244543 AACAAAGGATTAAAAGATTTAA-TAGGTA
1 AACAAAGGATTAAAAAAATTAACTAGGTA
244571 AACAAAGGA-TAAAAAAATTAACTAGG
1 AACAAAGGATTAAAAAAATTAACTAGG
244597 ATTGAACAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 10 0.43
28 13 0.57
ACGTcount: A:0.57, C:0.06, G:0.17, T:0.20
Consensus pattern (29 bp):
AACAAAGGATTAAAAAAATTAACTAGGTA
Found at i:245066 original size:40 final size:40
Alignment explanation
Indices: 244984--245111 Score: 118
Period size: 40 Copynumber: 3.2 Consensus size: 40
244974 GGCTAGGGTT
* * * * *
244984 AAACCGATAAAGCCAATGAGT-CAAGGTGTTTACCACGACG
1 AAACTGATAAAGCCAATGAGTAAAAGG-GTTGACCAGGGCG
* *
245024 AAACTGATAAAGTCAACT-AGTTAAAA-GGTTGGCCAGGGCG
1 AAACTGATAAAGCCAA-TGAG-TAAAAGGGTTGACCAGGGCG
* * *
245064 AAACCGATAAAGCCAATGAGTAAAAGGGTTGACTAGGGTG
1 AAACTGATAAAGCCAATGAGTAAAAGGGTTGACCAGGGCG
245104 AAACTGAT
1 AAACTGAT
245112 GGCGAAATTG
Statistics
Matches: 70, Mismatches: 13, Indels: 10
0.75 0.14 0.11
Matches are distributed among these distances:
39 6 0.09
40 59 0.84
41 3 0.04
42 2 0.03
ACGTcount: A:0.39, C:0.16, G:0.26, T:0.19
Consensus pattern (40 bp):
AAACTGATAAAGCCAATGAGTAAAAGGGTTGACCAGGGCG
Found at i:245107 original size:80 final size:80
Alignment explanation
Indices: 244885--245253 Score: 253
Period size: 80 Copynumber: 4.5 Consensus size: 80
244875 ACTTTAAATG
* * * * * *
244885 ATTAAAA-GTTGGCCAAGGCAAAACTGAGAAAGCCAACGTATTAAAAGGGTTGACCAGGGTAAAA
1 ATTAAAAGGTTGGCCAGGGCGAAACCGATAAAGCCAATG-AGTAAAAGGGTTGACCAGGGTAAAA
* *
244949 C-CAT-AAGTTAACCA
65 CTGATAAAGTCAACCA
* ** * * * ***
244963 ATTAAAAGGTTGGCTAGGGTTAAACCGATAAAGCCAATGAGT-CAAGGTGTTTACCACGACGAAA
1 ATTAAAAGGTTGGCCAGGGCGAAACCGATAAAGCCAATGAGTAAAAGG-GTTGACCAGGGTAAAA
*
245027 CTGATAAAGTCAACTA
65 CTGATAAAGTCAACCA
* * *
245043 GTTAAAAGGTTGGCCAGGGCGAAACCGATAAAGCCAATGAGTAAAAGGGTTGACTAGGGTGAAAC
1 ATTAAAAGGTTGGCCAGGGCGAAACCGATAAAGCCAATGAGTAAAAGGGTTGACCAGGGTAAAAC
*
245108 TGATGGCGAAATTGATAAAGCCAA
66 TGAT----AAA--G-TCAA-CC-A
* ** * * ** *
245132 CGAGTAGAAAGGTTAACCAAGGCGAAACCAATAAAGCCAACAAGTAGAAA-GGTTGACTAGGGTA
1 --ATTA-AAAGGTTGGCCAGGGCGAAACCGATAAAGCCAATGAGTA-AAAGGGTTGACCAGGGTA
* *
245196 AAATTGATAAAGTTAACCA
62 AAACTGATAAAGTCAACCA
* * *
245215 ATTAAAAGGTTGGCTAGGGTGAAACTGATAAAGCCAATG
1 ATTAAAAGGTTGGCCAGGGCGAAACCGATAAAGCCAATG
245254 GGTTAGAAGA
Statistics
Matches: 223, Mismatches: 50, Indels: 34
0.73 0.16 0.11
Matches are distributed among these distances:
77 4 0.02
78 21 0.09
79 26 0.12
80 88 0.39
81 7 0.03
83 1 0.00
84 5 0.02
85 3 0.01
86 2 0.01
87 3 0.01
88 4 0.02
89 1 0.00
91 2 0.01
92 53 0.24
93 3 0.01
ACGTcount: A:0.41, C:0.15, G:0.25, T:0.19
Consensus pattern (80 bp):
ATTAAAAGGTTGGCCAGGGCGAAACCGATAAAGCCAATGAGTAAAAGGGTTGACCAGGGTAAAAC
TGATAAAGTCAACCA
Found at i:245159 original size:52 final size:52
Alignment explanation
Indices: 245060--245159 Score: 121
Period size: 52 Copynumber: 1.9 Consensus size: 52
245050 GGTTGGCCAG
* * * * *
245060 GGCGAAACCGATAAAGCCAATGAGTAAAAGGGTTGACTAGGGTGAAACTGAT
1 GGCGAAACCGATAAAGCCAACGAGTAAAAGGGTTAACCAAGGCGAAACTGAT
**
245112 GGCGAAATTGATAAAGCCAACGAGTAGAAA-GGTTAACCAAGGCGAAAC
1 GGCGAAACCGATAAAGCCAACGAGTA-AAAGGGTTAACCAAGGCGAAAC
245160 CAATAAAGCC
Statistics
Matches: 40, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
52 37 0.93
53 3 0.08
ACGTcount: A:0.41, C:0.15, G:0.29, T:0.15
Consensus pattern (52 bp):
GGCGAAACCGATAAAGCCAACGAGTAAAAGGGTTAACCAAGGCGAAACTGAT
Found at i:245186 original size:92 final size:92
Alignment explanation
Indices: 245022--245203 Score: 233
Period size: 92 Copynumber: 2.0 Consensus size: 92
245012 TTTACCACGA
* * ** * * **
245022 CGAAACTGATAAAGTCAACTAGTTAAAAGGTTGGCCAGGGCGAAACCGATAAAGCCAATGAGTAA
1 CGAAACTGATAAAGCCAACGAGTTAAAAGGTTAACCAAGGCGAAACCAATAAAGCCAACAAGTAA
*
245087 AAGGGTTGACTAGGGTGAAACTGATGG
66 AAGGGTTGACTAGGGTAAAACTGATGG
*
245114 CGAAATTGATAAAGCCAACGAG-TAGAAAGGTTAACCAAGGCGAAACCAATAAAGCCAACAAGTA
1 CGAAACTGATAAAGCCAACGAGTTA-AAAGGTTAACCAAGGCGAAACCAATAAAGCCAACAAGTA
*
245178 GAAA-GGTTGACTAGGGTAAAATTGAT
65 -AAAGGGTTGACTAGGGTAAAACTGAT
245204 AAAGTTAACC
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
91 2 0.03
92 72 0.94
93 3 0.04
ACGTcount: A:0.42, C:0.14, G:0.26, T:0.18
Consensus pattern (92 bp):
CGAAACTGATAAAGCCAACGAGTTAAAAGGTTAACCAAGGCGAAACCAATAAAGCCAACAAGTAA
AAGGGTTGACTAGGGTAAAACTGATGG
Found at i:245206 original size:40 final size:40
Alignment explanation
Indices: 245115--245251 Score: 132
Period size: 40 Copynumber: 3.4 Consensus size: 40
245105 AACTGATGGC
* * * * * *
245115 GAAATTGATAAAGCCAACGAGTAGAAAGGTTAACCAAGGC
1 GAAACTGATAAAGCCAACAAGTAGAAAGGTTGACTAGGGT
**
245155 GAAACCAATAAAGCCAACAAGTAGAAAGGTTGACTAGGGT
1 GAAACTGATAAAGCCAACAAGTAGAAAGGTTGACTAGGGT
* * ** * *
245195 AAAATTGATAAAGTTAACCAATTA-AAAGGTTGGCTAGGGT
1 GAAACTGATAAAGCCAA-CAAGTAGAAAGGTTGACTAGGGT
245235 GAAACTGATAAAGCCAA
1 GAAACTGATAAAGCCAA
245252 TGGGTTAGAA
Statistics
Matches: 76, Mismatches: 20, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
40 71 0.93
41 5 0.07
ACGTcount: A:0.45, C:0.13, G:0.23, T:0.18
Consensus pattern (40 bp):
GAAACTGATAAAGCCAACAAGTAGAAAGGTTGACTAGGGT
Found at i:246388 original size:88 final size:87
Alignment explanation
Indices: 246239--246599 Score: 361
Period size: 88 Copynumber: 4.1 Consensus size: 87
246229 CTAATAGATA
* * *
246239 TGGCAAATGCATATGAAATGATGCAAATACAAATGTTATCTAAAGTATAG-ATATGTA-TGAAAT
1 TGGCAAATGCATATGAAATGATGCAAATACCAATGTCATCTAAA--AT-GCACATGTACTGAAAT
* * **
246302 AATGCAACAGTAAGCCTCAATAAAG
63 AATGCAATAGCAAGTATCAATAAAG
* * *
246327 TGGCAAATGCATACGAAATGATGCAAATGCTAATGTCATCTAAAATGCACATGTACGTGAAATAA
1 TGGCAAATGCATATGAAATGATGCAAATACCAATGTCATCTAAAATGCACATGTAC-TGAAATAA
* * *
246392 CGCAATTGCAAGTATCAATAAAA
65 TGCAATAGCAAGTATCAATAAAG
* * **
246415 TGGCAAATGCATATGAAATGATACAAATACCAATGTCATCTAAAATGCACATGTGCATGAAACGA
1 TGGCAAATGCATATGAAATGATGCAAATACCAATGTCATCTAAAATGCACATGTAC-TGAAATAA
246480 TGCAATTA-CAAGTATCAATAAAG
65 TGCAA-TAGCAAGTATCAATAAAG
* * * * * ** * **
246503 TGGCAAATGCATATGAAATGATGTAAATGCCAATCTTATCTAAAGTGCTGATGTGCATGAAACGA
1 TGGCAAATGCATATGAAATGATGCAAATACCAATGTCATCTAAAATGCACATGTAC-TGAAATAA
* * *
246568 TGCAATTGCAAGCATAAATAAAG
65 TGCAATAGCAAGTATCAATAAAG
246591 -GGCAAATGC
1 TGGCAAATGC
246600 GCATAAGGTG
Statistics
Matches: 234, Mismatches: 34, Indels: 11
0.84 0.12 0.04
Matches are distributed among these distances:
85 1 0.00
86 8 0.03
87 10 0.04
88 214 0.91
89 1 0.00
ACGTcount: A:0.43, C:0.14, G:0.18, T:0.25
Consensus pattern (87 bp):
TGGCAAATGCATATGAAATGATGCAAATACCAATGTCATCTAAAATGCACATGTACTGAAATAAT
GCAATAGCAAGTATCAATAAAG
Found at i:246432 original size:44 final size:46
Alignment explanation
Indices: 246318--246521 Score: 115
Period size: 44 Copynumber: 4.6 Consensus size: 46
246308 ACAGTAAGCC
* * * * *
246318 TCAATAAAGTGGCAAATGCATACGAAATGATGCAAATGCTAATGTCA
1 TCAATAAAATGGCAAATGCATATGAAATAACGCAATTGC-AATGTCA
* * **
246365 TC--TAAAAT-GCACATGTACGTGAAATAACGCAATTGCAA-GT-A
1 TCAATAAAATGGCAAATGCATATGAAATAACGCAATTGCAATGTCA
* **
246406 TCAATAAAATGGCAAATGCATATGAAATGATAC-AAATACCAATGTCA
1 TCAATAAAATGGCAAATGCATATGAAAT-A-ACGCAATTGCAATGTCA
* *** ** * *
246453 TC--TAAAAT-GCACATGTGCATGAAACGATGCAATTACAA-GT-A
1 TCAATAAAATGGCAAATGCATATGAAATAACGCAATTGCAATGTCA
*
246494 TCAATAAAGTGGCAAATGCATATGAAAT
1 TCAATAAAATGGCAAATGCATATGAAAT
246522 GATGTAAATG
Statistics
Matches: 114, Mismatches: 32, Indels: 25
0.67 0.19 0.15
Matches are distributed among these distances:
41 6 0.05
42 5 0.04
43 19 0.17
44 57 0.50
45 18 0.16
46 4 0.04
47 5 0.04
ACGTcount: A:0.44, C:0.15, G:0.17, T:0.24
Consensus pattern (46 bp):
TCAATAAAATGGCAAATGCATATGAAATAACGCAATTGCAATGTCA
Found at i:246444 original size:176 final size:175
Alignment explanation
Indices: 246238--246599 Score: 420
Period size: 176 Copynumber: 2.1 Consensus size: 175
246228 TCTAATAGAT
* * * * * * *
246238 ATGGCAAATGCATATGAAATGATGCAAATACAAATGTTATCTAAAGTATAGATATGTATGAAATA
1 ATGGCAAATGCATATGAAATGATACAAATACAAATGTCATCTAAAATACACATATGCATGAAACA
* * * *
246303 ATGCAA-CAGTAAGCCTCAATAAAGTGGCAAATGCATACGAAATGATGCAAATGCTAATGTCATC
66 ATGCAATCA-CAAGCATCAATAAAGTGGCAAATGCATACGAAATGATGCAAATGCCAATCTCATC
* * * *
246367 TAAAATGCACATGTACGTGAAATAACGCAATTGCAAGTATCAATAAA
130 TAAAATGCACATGTACATGAAACAACGCAATTGCAAGCATAAAT-AA
* * * *
246414 ATGGCAAATGCATATGAAATGATACAAATACCAATGTCATCTAAAATGCACATGTGCATGAAACG
1 ATGGCAAATGCATATGAAATGATACAAATACAAATGTCATCTAAAATACACATATGCATGAAACA
* * * * *
246479 ATGCAATTACAAGTATCAATAAAGTGGCAAATGCATATGAAATGATGTAAATGCCAATCTTATCT
66 ATGCAATCACAAGCATCAATAAAGTGGCAAATGCATACGAAATGATGCAAATGCCAATCTCATCT
* ** * * *
246544 AAAGTGCTGATGTGCATGAAACGATGCAATTGCAAGCATAAATAA
131 AAAATGCACATGTACATGAAACAACGCAATTGCAAGCATAAATAA
*
246589 AGGGCAAATGC
1 ATGGCAAATGC
246600 GCATAAGGTG
Statistics
Matches: 154, Mismatches: 31, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
175 12 0.08
176 141 0.92
177 1 0.01
ACGTcount: A:0.43, C:0.14, G:0.18, T:0.25
Consensus pattern (175 bp):
ATGGCAAATGCATATGAAATGATACAAATACAAATGTCATCTAAAATACACATATGCATGAAACA
ATGCAATCACAAGCATCAATAAAGTGGCAAATGCATACGAAATGATGCAAATGCCAATCTCATCT
AAAATGCACATGTACATGAAACAACGCAATTGCAAGCATAAATAA
Found at i:247082 original size:9 final size:9
Alignment explanation
Indices: 247068--247100 Score: 57
Period size: 9 Copynumber: 3.7 Consensus size: 9
247058 TGGACTTTTT
247068 AAAAAAACA
1 AAAAAAACA
*
247077 AAAAAAATA
1 AAAAAAACA
247086 AAAAAAACA
1 AAAAAAACA
247095 AAAAAA
1 AAAAAA
247101 GAGAGAAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.91, C:0.06, G:0.00, T:0.03
Consensus pattern (9 bp):
AAAAAAACA
Found at i:247542 original size:20 final size:20
Alignment explanation
Indices: 247481--247556 Score: 79
Period size: 20 Copynumber: 3.9 Consensus size: 20
247471 TTTTACCCAG
*
247481 ATGTATC-ATACATAT-TTCC
1 ATGTATCGATACAT-TCTTCA
*
247500 ATGTATCGATACA--CGTATGA
1 ATGTATCGATACATTC-T-TCA
247520 ATGTATCGATACATTCTTCA
1 ATGTATCGATACATTCTTCA
247540 ATGTATCGATACATTCT
1 ATGTATCGATACATTCT
247557 ATCTTTTTAA
Statistics
Matches: 48, Mismatches: 3, Indels: 11
0.77 0.05 0.18
Matches are distributed among these distances:
19 8 0.17
20 38 0.79
21 1 0.02
22 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.12, T:0.38
Consensus pattern (20 bp):
ATGTATCGATACATTCTTCA
Found at i:247596 original size:20 final size:19
Alignment explanation
Indices: 247571--247645 Score: 69
Period size: 20 Copynumber: 3.8 Consensus size: 19
247561 TTTTAACCAG
247571 ATGTATCGATACATTTTTCA
1 ATGTATCGATACATTTTT-A
* *
247591 ATGTATTGATACATTTATGA
1 ATGTATCGATACATTT-TTA
* **
247611 CTCCATCGATACATTCTTTA
1 ATGTATCGATACATT-TTTA
*
247631 ATGTATCGATTCATT
1 ATGTATCGATACATT
247646 CTGTCTTTTT
Statistics
Matches: 42, Mismatches: 11, Indels: 4
0.74 0.19 0.07
Matches are distributed among these distances:
20 40 0.95
21 2 0.05
ACGTcount: A:0.29, C:0.16, G:0.11, T:0.44
Consensus pattern (19 bp):
ATGTATCGATACATTTTTA
Found at i:247624 original size:91 final size:91
Alignment explanation
Indices: 247470--247695 Score: 285
Period size: 91 Copynumber: 2.5 Consensus size: 91
247460 AAAAGTCACA
* * * * **
247470 TTTTTACCCAGATGTATC-ATACATATTTCCATGTATCGATACACGTATGAATGTATCGATACAT
1 TTTTTAACCAGATGTATCGATACATTTTTCAATGTATCGATACATGTATGAATCCATCGATACAT
247534 TCTTCAATGTATCGATACATTCTATC
66 TCTTCAATGTATCGATACATTCTATC
* * *
247560 TTTTTAACCAGATGTATCGATACATTTTTCAATGTATTGATACATTTATGACTCCATCGATACAT
1 TTTTTAACCAGATGTATCGATACATTTTTCAATGTATCGATACATGTATGAATCCATCGATACAT
* * *
247625 TCTTTAATGTATCGATTCATTCTGTC
66 TCTTCAATGTATCGATACATTCTATC
* * * *
247651 TTTTT-TCCTAGATGTCTCGAGATATTTTTCAATGTATCGATACAT
1 TTTTTAACC-AGATGTATCGATACATTTTTCAATGTATCGATACAT
247696 CTAGTTAAAA
Statistics
Matches: 117, Mismatches: 17, Indels: 3
0.85 0.12 0.02
Matches are distributed among these distances:
90 19 0.16
91 98 0.84
ACGTcount: A:0.28, C:0.18, G:0.12, T:0.42
Consensus pattern (91 bp):
TTTTTAACCAGATGTATCGATACATTTTTCAATGTATCGATACATGTATGAATCCATCGATACAT
TCTTCAATGTATCGATACATTCTATC
Found at i:255008 original size:26 final size:26
Alignment explanation
Indices: 254972--255023 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
254962 TCCTTTGCCA
254972 CCCCATTTGAGCCTGACAAATTTTTT
1 CCCCATTTGAGCCTGACAAATTTTTT
254998 CCCCATTTGAGCCTGACAAATTTTTT
1 CCCCATTTGAGCCTGACAAATTTTTT
255024 TCTTTTGAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.23, C:0.27, G:0.12, T:0.38
Consensus pattern (26 bp):
CCCCATTTGAGCCTGACAAATTTTTT
Found at i:256597 original size:27 final size:28
Alignment explanation
Indices: 256524--256862 Score: 362
Period size: 28 Copynumber: 12.2 Consensus size: 28
256514 AGTGGTTTTT
256524 CTTTTCAAAGTCCACAACTCCGTGGCATC
1 CTTTT-AAAGTCCACAACTCCGTGGCATC
* *
256553 CTTTTTAAGTCCACAACTCCGTGGCAAC
1 CTTTTAAAGTCCACAACTCCGTGGCATC
* *
256581 CTTTT-AAGTCCATAACTCCATGGCATC
1 CTTTTAAAGTCCACAACTCCGTGGCATC
* * *
256608 TTTTTAAAGTCCACAACTCTGTGGTATC
1 CTTTTAAAGTCCACAACTCCGTGGCATC
* * *
256636 CTTTTAAAGTCCACAATTTCGTGGCACC
1 CTTTTAAAGTCCACAACTCCGTGGCATC
* * *
256664 CTTTTAAAGTCCACAATTTCGTGGCACC
1 CTTTTAAAGTCCACAACTCCGTGGCATC
* *
256692 CTTTTAAAGTCAACAACTTCGTGGCATC
1 CTTTTAAAGTCCACAACTCCGTGGCATC
*
256720 CTTTTAAAGTCCACAACTCCATGGCATC
1 CTTTTAAAGTCCACAACTCCGTGGCATC
* *
256748 CTTTT-AAGTCCATAACTTCGTGGCATC
1 CTTTTAAAGTCCACAACTCCGTGGCATC
* *
256775 CTTTT-AAGTCCATAACTTCGTGGCATC
1 CTTTTAAAGTCCACAACTCCGTGGCATC
* * * ** *
256802 CTTTTTAAG-CCTAGAAGTCAATGGCACC
1 CTTTTAAAGTCC-ACAACTCCGTGGCATC
** * *
256830 CTTCCAAAGTCCACAACTTCGTAGCATC
1 CTTTTAAAGTCCACAACTCCGTGGCATC
256858 CTTTT
1 CTTTT
256863 TAAGCCCATA
Statistics
Matches: 263, Mismatches: 43, Indels: 9
0.83 0.14 0.03
Matches are distributed among these distances:
27 76 0.29
28 180 0.68
29 7 0.03
ACGTcount: A:0.25, C:0.29, G:0.14, T:0.32
Consensus pattern (28 bp):
CTTTTAAAGTCCACAACTCCGTGGCATC
Found at i:256809 original size:83 final size:82
Alignment explanation
Indices: 256524--256941 Score: 369
Period size: 84 Copynumber: 5.0 Consensus size: 82
256514 AGTGGTTTTT
* * *
256524 CTTTTCAAAGTCCACAACTCCGTGGCATCCTTTTTAAGTCCACAACTCCGTGGCAACCTTTTAAG
1 CTTTT-AAAGTCCACAACTTCGTGGCATCC-TTTTAAGTCCACAACTCCATGGCACCCTTTTAAG
* * *
256589 TCCATAACTCCATGGCATC
64 TCCACAACTTCGTGGCATC
* * * * *
256608 TTTTTAAAGTCCACAAC-TCTGTGGTATCCTTTTAAAGTCCACAATTTCGTGGCACCCTTTTAAA
1 CTTTTAAAGTCCACAACTTC-GTGGCATCCTTTT-AAGTCCACAACTCCATGGCACCCTTTT-AA
* *
256672 GTCCACAATTTCGTGGCACC
63 GTCCACAACTTCGTGGCATC
* *
256692 CTTTTAAAGTCAACAACTTCGTGGCATCCTTTTAAAGTCCACAACTCCATGGCATCCTTTTAAGT
1 CTTTTAAAGTCCACAACTTCGTGGCATCCTTTT-AAGTCCACAACTCCATGGCACCCTTTTAAGT
*
256757 CCATAACTTCGTGGCATC
65 CCACAACTTCGTGGCATC
* * * * **
256775 CTTTT-AAGTCCATAACTTCGTGGCATCCTTTTTAAG-CCTAGAAGTCAATGGCACCCTTCCAAA
1 CTTTTAAAGTCCACAACTTCGTGGCATCC-TTTTAAGTCC-ACAACTCCATGGCACCCTT-TTAA
*
256838 GTCCACAACTTCGTAGCATC
63 GTCCACAACTTCGTGGCATC
* * * * * * * *
256858 CTTTTTAAGCCCATAAGTTAGTGGCA-CTCTTCTAAAGCCCACAAGT-CAGTGGCACCCTTTTTT
1 CTTTTAAAGTCCACAACTTCGTGGCATC-CTT-TTAAGTCCACAACTCCA-TGGCACCC--TTTT
* * *
256921 AAGCCCACAAGTTAGTGGCAT
61 AAGTCCACAACTTCGTGGCAT
256942 TATTTCAAAG
Statistics
Matches: 277, Mismatches: 43, Indels: 27
0.80 0.12 0.08
Matches are distributed among these distances:
81 2 0.01
82 44 0.16
83 101 0.36
84 107 0.39
85 21 0.08
86 2 0.01
ACGTcount: A:0.26, C:0.28, G:0.15, T:0.31
Consensus pattern (82 bp):
CTTTTAAAGTCCACAACTTCGTGGCATCCTTTTAAGTCCACAACTCCATGGCACCCTTTTAAGTC
CACAACTTCGTGGCATC
Found at i:256848 original size:56 final size:56
Alignment explanation
Indices: 256559--256932 Score: 188
Period size: 56 Copynumber: 6.7 Consensus size: 56
256549 CATCCTTTTT
* * * * * * * * **
256559 AAGTCCACAACTCCGTGGCAACC-TTTTAAGTCCATAACTCCATGGCATCTTTTTA
1 AAGTCCACAACTTCGTGGCATCCTTTTTAAGCCCAGAAGTCAATGGCACCCTTCCA
* * * * * * **
256614 AAGTCCACAAC-TCTGTGGTATCCTTTTAAAGTCCACAATTTC-GTGGCACCCTTTTA
1 AAGTCCACAACTTC-GTGGCATCCTTTTTAAGCCCAGAA-GTCAATGGCACCCTTCCA
* * * * * * * * * **
256670 AAGTCCACAATTTCGTGGCACCCTTTTAAAGTCAACAACTTC-GTGGCATCCTTTTA
1 AAGTCCACAACTTCGTGGCATCCTTTTTAAGCCCAGAA-GTCAATGGCACCCTTCCA
* * * * * * * **
256726 AAGTCCACAACTCCATGGCATCC-TTTTAAGTCCATAACTTC-GTGGCATCCTT-TT
1 AAGTCCACAACTTCGTGGCATCCTTTTTAAGCCCAGAA-GTCAATGGCACCCTTCCA
* *
256780 AAGTCCATAACTTCGTGGCATCCTTTTTAAGCCTAGAAGTCAATGGCACCCTTCCA
1 AAGTCCACAACTTCGTGGCATCCTTTTTAAGCCCAGAAGTCAATGGCACCCTTCCA
* * * * * *
256836 AAGTCCACAACTTCGTAGCATCCTTTTTAAGCCCATAAGTTAGTGGCACTCTTCTA
1 AAGTCCACAACTTCGTGGCATCCTTTTTAAGCCCAGAAGTCAATGGCACCCTTCCA
* * * *
256892 AAGCCCACAA-GTCAGTGGCACCCTTTTTTAAGCCCACAAGT
1 AAGTCCACAACTTC-GTGGCATCC-TTTTTAAGCCCAGAAGT
256933 TAGTGGCATT
Statistics
Matches: 263, Mismatches: 47, Indels: 16
0.81 0.14 0.05
Matches are distributed among these distances:
54 24 0.09
55 66 0.25
56 153 0.58
57 20 0.08
ACGTcount: A:0.26, C:0.28, G:0.14, T:0.31
Consensus pattern (56 bp):
AAGTCCACAACTTCGTGGCATCCTTTTTAAGCCCAGAAGTCAATGGCACCCTTCCA
Found at i:256995 original size:32 final size:31
Alignment explanation
Indices: 256943--257625 Score: 503
Period size: 32 Copynumber: 22.4 Consensus size: 31
256933 TAGTGGCATT
* *
256943 ATTTCAAAGCCCACATAAGTCGGTGCCAACTC
1 ATTTCAAAGCCCACACAAGTCGGTGGCAAC-C
* * ** *
256975 ATTTGAAAGCCAACACAAGTCAATGCCAACCC
1 ATTTCAAAGCCCACACAAGTCGGTGGCAA-CC
**
257007 ATTTCAAAGCCCACACAAGTTAGTGGCAACCC
1 ATTTCAAAGCCCACACAAGTCGGTGGCAA-CC
* *
257039 ATTTGAAAGCCCACACAAGTCGGTGGTAACC
1 ATTTCAAAGCCCACACAAGTCGGTGGCAACC
257070 TATTTCAAAGCCCACACAAGTCGGTGGCAACC
1 -ATTTCAAAGCCCACACAAGTCGGTGGCAACC
* **
257102 TATTTCAAAG-CC-CACAAGTCAGTGGC-ATT
1 -ATTTCAAAGCCCACACAAGTCGGTGGCAACC
* * ** *
257131 TTTCTCAAAG--CTCACAAGTCAATGGC-ATC
1 ATT-TCAAAGCCCACACAAGTCGGTGGCAACC
* * *
257160 TTTCTCAAAGCCCACATAAGTCAGTGGCAACC
1 ATT-TCAAAGCCCACACAAGTCGGTGGCAACC
257192 AATTTCAAAGCCCACACAAGTCGGTGGCAACC
1 -ATTTCAAAGCCCACACAAGTCGGTGGCAACC
* *
257224 TATTTCAAAG-CC-CACAAGTCAGTGGCATCC
1 -ATTTCAAAGCCCACACAAGTCGGTGGCAACC
** * *
257254 -TTCTCAAAG--TGCACAAGTCAGTGGCATCC
1 ATT-TCAAAGCCCACACAAGTCGGTGGCAACC
*
257283 -TTCTCAAAGCCCACACAAGTCGGTGGTAACCC
1 ATT-TCAAAGCCCACACAAGTCGGTGGCAA-CC
*
257315 ATTTGAAAGCCCACACAAGTCGGTGGCAACCC
1 ATTTCAAAGCCCACACAAGTCGGTGGCAA-CC
*
257347 ATTTCAAAGCCCACACAAGTCGGTGGAAACCC
1 ATTTCAAAGCCCACACAAGTCGGTGGCAA-CC
* *
257379 ATTTCAAAG-CC-CACAAGTCAGTGGCATCC
1 ATTTCAAAGCCCACACAAGTCGGTGGCAACC
* * *
257408 -TTCTCAAAG-GC-CACAAGTCAGTGGC-ATC
1 ATT-TCAAAGCCCACACAAGTCGGTGGCAACC
*
257436 ATTTTCAAAGCCCACACAAGTCGATGGCAACCC
1 A-TTTCAAAGCCCACACAAGTCGGTGGCAA-CC
* * *
257469 ATTTCAAAG-CC-CATAAGTCAGTGGCATCC
1 ATTTCAAAGCCCACACAAGTCGGTGGCAACC
* *
257498 -TTCTCAAAG-CC-CACAAGTCAGTGGCATCC
1 ATT-TCAAAGCCCACACAAGTCGGTGGCAACC
* ** *
257527 -TTCTCAAAGCCCACACAAATCACTGGC-ATC
1 ATT-TCAAAGCCCACACAAGTCGGTGGCAACC
* *
257557 TTTTCAAAG-CC-CACAAGTCAGTGG-AATCC
1 ATTTCAAAGCCCACACAAGTCGGTGGCAA-CC
* * *
257586 -TTTCAAAG-CC-CATAAGTCAGTGGCATCC
1 ATTTCAAAGCCCACACAAGTCGGTGGCAACC
257614 -TTTCAAAGCCCA
1 ATTTCAAAGCCCA
257626 TAAGTCAATG
Statistics
Matches: 555, Mismatches: 66, Indels: 62
0.81 0.10 0.09
Matches are distributed among these distances:
28 54 0.10
29 136 0.25
30 66 0.12
31 62 0.11
32 230 0.41
33 7 0.01
ACGTcount: A:0.32, C:0.30, G:0.17, T:0.21
Consensus pattern (31 bp):
ATTTCAAAGCCCACACAAGTCGGTGGCAACC
Found at i:257187 original size:90 final size:88
Alignment explanation
Indices: 256853--257674 Score: 666
Period size: 90 Copynumber: 9.1 Consensus size: 88
256843 CAACTTCGTA
** * * *
256853 GCATCCTTTTTAAGCCCATAAGTTAGTGGCA--CTCTTCTAAAG-CC-CACAAGTCAGTGGCACC
1 GCATCCTTTCAAAGCCCACAAGTCAGTGGCATCCT-TTC-AAAGCCCACACAAGTCAGTGGCAAC
** *
256914 CT-TTTTTAAGCCCACAAGTTAGTG
64 CTATTTCAAAGCCCACAAGTCAGTG
** * * * * * * *
256938 GCATTATTTCAAAGCCCACATAAGTCGGTGCCAACTCATTTGAAAGCCAACACAAGTCAATGCCA
1 GCATCCTTTCAAAGCCCAC--AAGTCAGTGGC-A-TCCTTTCAAAGCCCACACAAGTCAGTGGCA
* *
257003 ACCCATTTCAAAGCCCACACAAGTTAGTG
62 ACCTATTTCAAAG-CC-CACAAGTCAGTG
* * * * * *
257032 GCAACCCATTTGAAAGCCCACACAAGTCGGTGGTAACCTATTTCAAAGCCCACACAAGTCGGTGG
1 GC-ATCC-TTTCAAAG-CC-CACAAGTCAGTGGCATCC--TTTCAAAGCCCACACAAGTCAGTGG
257097 CAACCTATTTCAAAGCCCACAAGTCAGTG
60 CAACCTATTTCAAAGCCCACAAGTCAGTG
** * * * *
257126 GCATTTTTCTCAAAGCTCACAAGTCAATGGCATCTTTCTCAAAGCCCACATAAGTCAGTGGCAAC
1 GCATCCTT-TCAAAGCCCACAAGTCAGTGGCATCCTT-TCAAAGCCCACACAAGTCAGTGGCAAC
* *
257191 CAATTTCAAAGCCCACACAAGTCGGTG
64 CTATTTCAAAG-CC-CACAAGTCAGTG
* ** *
257218 GCAACCTATTTCAAAGCCCACAAGTCAGTGGCATCCTTCTCAAAG--TGCACAAGTCAGTGGCAT
1 GCATCC--TTTCAAAGCCCACAAGTCAGTGGCATCCTT-TCAAAGCCCACACAAGTCAGTGGCAA
* *
257281 CCT-TCTCAAAGCCCACACAAGTCGGTG
63 CCTATTTCAAAG-CC-CACAAGTCAGTG
* * * * * *
257308 GTAACCCATTTGAAAGCCCACACAAGTCGGTGGCAACCCATTTCAAAGCCCACACAAGTCGGTGG
1 G-CATCC-TTTCAAAG-CC-CACAAGTCAGTGGC-ATCC-TTTCAAAGCCCACACAAGTCAGTGG
* *
257373 AAACCCATTTCAAAGCCCACAAGTCAGTG
60 CAACCTATTTCAAAGCCCACAAGTCAGTG
* *
257402 GCATCCTTCTCAAAGGCCACAAGTCAGTGGCATCATTTTCAAAGCCCACACAAGTC-GATGGCAA
1 GCATCCTT-TCAAAGCCCACAAGTCAGTGGCATC-CTTTCAAAGCCCACACAAGTCAG-TGGCAA
* *
257466 CCCATTTCAAAGCCCATAAGTCAGTG
63 CCTATTTCAAAGCCCACAAGTCAGTG
* * *
257492 GCATCCTTCTCAAAGCCCACAAGTCAGTGGCATCCTTCTCAAAGCCCACACAAATCACTGGC-AT
1 GCATCCTT-TCAAAGCCCACAAGTCAGTGGCATCCTT-TCAAAGCCCACACAAGTCAGTGGCAAC
257556 CT-TTTCAAAGCCCACAAGTCAGTG
64 CTATTTCAAAGCCCACAAGTCAGTG
* * * * *
257580 GAATCCTTTCAAAGCCCATAAGTCAGTGGCATCCTTTCAAAG-CC-CATAAGTCAATGGCATCCT
1 GCATCCTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACACAAGTCAGTGGCAACCT
* *
257643 -TCTCAAAGCCCACATAAGTTAGTG
66 ATTTCAAAGCCCAC--AAGTCAGTG
257667 GCA-CCTTT
1 GCATCCTTT
257675 TTTTTTAAAA
Statistics
Matches: 601, Mismatches: 97, Indels: 77
0.78 0.13 0.10
Matches are distributed among these distances:
84 11 0.02
85 30 0.05
86 11 0.02
87 45 0.07
88 29 0.05
89 11 0.02
90 176 0.29
91 65 0.11
92 39 0.06
93 57 0.09
94 44 0.07
95 21 0.03
96 57 0.09
97 2 0.00
98 3 0.00
ACGTcount: A:0.31, C:0.30, G:0.17, T:0.22
Consensus pattern (88 bp):
GCATCCTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACACAAGTCAGTGGCAACCT
ATTTCAAAGCCCACAAGTCAGTG
Found at i:257189 original size:154 final size:151
Alignment explanation
Indices: 256897--257661 Score: 720
Period size: 154 Copynumber: 5.0 Consensus size: 151
256887 TTCTAAAGCC
* * ** * ***
256897 CACAAGTCAGTGGCACCCT-TTTTTAAGCCCACAAGTTAGTGGCATTATT-TCAAAGCCCACATA
1 CACAAGTCGGTGGCAACCTATTTCAAAGCCCACAAGTCAGTGGCAACCTTCTCAAAGCCCAC--A
* * * * * *
256960 AGTCGGTGCCAACTCATTTGAAAGCCAACACAAGTCAATGCCAACCCATTTCAAAGCCCACACAA
64 AGTCAGTGGC-A-TCCTTTCAAAGCC-ACACAAGTCAATGGC-ACCCATTTCAAAGCCCACATAA
* *
257025 GTTAGTGGCAACCCATTTGAAAGCCCA
125 GTCAGTGGCAACCCATTTCAAAGCCCA
* * *
257052 CACAAGTCGGTGGTAACCTATTTCAAAGCCCACACAAGTCGGTGGCAACCTATTTCAAAGCCCAC
1 CACAAGTCGGTGGCAACCTATTTCAAAG-CC-CACAAGTCAGTGGCAACCT-TCTCAAAGCCCAC
** * * *
257117 AAGTCAGTGGCATTTTTCTCAAAG-CTCACAAGTCAATGGCA-TCTTTCTCAAAGCCCACATAAG
63 AAGTCAGTGGCATCCTT-TCAAAGCCACACAAGTCAATGGCACCCATT-TCAAAGCCCACATAAG
*
257180 TCAGTGGCAACCAATTTCAAAGCCCA
126 TCAGTGGCAACCCATTTCAAAGCCCA
* **
257206 CACAAGTCGGTGGCAACCTATTTCAAAGCCCACAAGTCAGTGGCATCCTTCTCAAAGTGCACAAG
1 CACAAGTCGGTGGCAACCTATTTCAAAGCCCACAAGTCAGTGGCAACCTTCTCAAAGCCCACAAG
** * * *
257271 TCAGTGGCATCCTTCTCAAAGCCCACACAAGTCGGTGGTAACCCATTTGAAAGCCCACACAAGTC
66 TCAGTGGCATCCTT-TCAAAG-CCACACAAGTCAATGG-CACCCATTTCAAAGCCCACATAAGTC
*
257336 GGTGGCAACCCATTTCAAAGCCCA
128 AGTGGCAACCCATTTCAAAGCCCA
* * * *
257360 CACAAGTCGGTGGAAACCCATTTCAAAGCCCACAAGTCAGTGGCATCCTTCTCAAAGGCCACAAG
1 CACAAGTCGGTGGCAACCTATTTCAAAGCCCACAAGTCAGTGGCAACCTTCTCAAAGCCCACAAG
* *
257425 TCAGTGGCATCATTTTCAAAGCCCACACAAGTCGATGGCAACCCATTTCAAAG-CC-CATAAGTC
66 TCAGTGGCATC-CTTTCAAAG-CCACACAAGTCAATGGC-ACCCATTTCAAAGCCCACATAAGTC
*
257488 AGTGGC-ATCC-TTCTCAAAG-CC-
128 AGTGGCAACCCATT-TCAAAGCCCA
* * * * * * *
257509 CACAAGTCAGTGGCATCCT-TCTCAAAGCCCACACAAATCACTGGC-ATCTTTTCAAAGCCCACA
1 CACAAGTCGGTGGCAACCTATTTCAAAG-CC-CACAAGTCAGTGGCAACCTTCTCAAAGCCCACA
* * * *
257572 AGTCAGTGGAATCCTTTCAAAGCC-CATAAGTCAGTGGCATCC-TTTCAAAG-CC-CATAAGTCA
64 AGTCAGTGGCATCCTTTCAAAGCCACACAAGTCAATGGCACCCATTTCAAAGCCCACATAAGTCA
* *
257633 ATGGC-ATCC-TTCTCAAAGCCCA
129 GTGGCAACCCATT-TCAAAGCCCA
*
257655 CATAAGT
1 CACAAGT
257662 TAGTGGCACC
Statistics
Matches: 521, Mismatches: 71, Indels: 45
0.82 0.11 0.07
Matches are distributed among these distances:
144 36 0.07
145 5 0.01
146 17 0.03
147 2 0.00
148 15 0.03
149 43 0.08
150 16 0.03
151 41 0.08
152 29 0.06
153 19 0.04
154 211 0.40
155 34 0.07
156 10 0.02
157 8 0.02
158 23 0.04
159 1 0.00
160 11 0.02
ACGTcount: A:0.31, C:0.30, G:0.17, T:0.21
Consensus pattern (151 bp):
CACAAGTCGGTGGCAACCTATTTCAAAGCCCACAAGTCAGTGGCAACCTTCTCAAAGCCCACAAG
TCAGTGGCATCCTTTCAAAGCCACACAAGTCAATGGCACCCATTTCAAAGCCCACATAAGTCAGT
GGCAACCCATTTCAAAGCCCA
Found at i:257208 original size:122 final size:122
Alignment explanation
Indices: 256864--257669 Score: 867
Period size: 122 Copynumber: 6.7 Consensus size: 122
256854 CATCCTTTTT
* * * * **
256864 AAGCCCATAAGTTAGTGGCA-CTCTTCT-AAAGCCCACAAGTCAGTGGCACCCTTTTTTAAG-CC
1 AAGCCCACAAGTCAGTGGCATC-CTTCTCAAAGCCCACAAGTCAGTGGCATCCTTCTCAAAGCCC
* ** * * * *
256926 -CACAAGTTAGTGGC-A-TTATTTCAAAGCCCACATAAGTCGGTGCCAACTCATTTGA
65 ACACAAGTCAGTGGCAACCAATTTCAAAGCCCACACAAGTCGGTGGCAACCCATTTCA
* * * * * *
256981 AAGCCAACACAAGTCAATGCCAACCCATT-TCAAAGCCCACACAAGTTAGTGGCAACCCATT-TG
1 AAGCC--CACAAGTCAGTGGC-ATCC-TTCTCAAAG-CC-CACAAGTCAGTGGC-ATCC-TTCTC
* * * *
257044 AAAGCCCACACAAGTCGGTGGTAACCTATTTCAAAGCCCACACAAGTCGGTGGCAACCTATTTCA
58 AAAGCCCACACAAGTCAGTGGCAACCAATTTCAAAGCCCACACAAGTCGGTGGCAACCCATTTCA
** * * *
257109 AAGCCCACAAGTCAGTGGCATTTTTCTCAAAGCTCACAAGTCAATGGCATCTTTCTCAAAGCCCA
1 AAGCCCACAAGTCAGTGGCATCCTTCTCAAAGCCCACAAGTCAGTGGCATCCTTCTCAAAGCCCA
* *
257174 CATAAGTCAGTGGCAACCAATTTCAAAGCCCACACAAGTCGGTGGCAACCTATTTCA
66 CACAAGTCAGTGGCAACCAATTTCAAAGCCCACACAAGTCGGTGGCAACCCATTTCA
**
257231 AAGCCCACAAGTCAGTGGCATCCTTCTCAAAGTGCACAAGTCAGTGGCATCCTTCTCAAAGCCCA
1 AAGCCCACAAGTCAGTGGCATCCTTCTCAAAGCCCACAAGTCAGTGGCATCCTTCTCAAAGCCCA
* * * *
257296 CACAAGTCGGTGGTAACCCATTTGAAAGCCCACACAAGTCGGTGGCAACCCATTTCA
66 CACAAGTCAGTGGCAACCAATTTCAAAGCCCACACAAGTCGGTGGCAACCCATTTCA
* * *
257353 AAGCCCACACAAGTCGGTGGAAACCCATT-TCAAAGCCCACAAGTCAGTGGCATCCTTCTCAAAG
1 AAG-CC-CACAAGTCAGTGG-CATCC-TTCTCAAAGCCCACAAGTCAGTGGCATCCTTCTCAAAG
* * * *
257417 -GC-CACAAGTCAGTGGC-ATCATTTTCAAAGCCCACACAAGTCGATGGCAACCCATTTCA
62 CCCACACAAGTCAGTGGCAACCAATTTCAAAGCCCACACAAGTCGGTGGCAACCCATTTCA
*
257475 AAGCCCATAAGTCAGTGGCATCCTTCTCAAAGCCCACAAGTCAGTGGCATCCTTCTCAAAGCCCA
1 AAGCCCACAAGTCAGTGGCATCCTTCTCAAAGCCCACAAGTCAGTGGCATCCTTCTCAAAGCCCA
* * * * * *
257540 CACAAATCACTGGC-ATC-TTTTCAAAG-CC-CACAAGTCAGTGG-AATCC-TTTCA
66 CACAAGTCAGTGGCAACCAATTTCAAAGCCCACACAAGTCGGTGGCAACCCATTTCA
* * *
257591 AAGCCCATAAGTCAGTGGCATCCTT-TCAAAGCCCATAAGTCAATGGCATCCTTCTCAAAGCCCA
1 AAGCCCACAAGTCAGTGGCATCCTTCTCAAAGCCCACAAGTCAGTGGCATCCTTCTCAAAGCCCA
* *
257655 CATAAGTTAGTGGCA
66 CACAAGTCAGTGGCA
257670 CCTTTTTTTT
Statistics
Matches: 593, Mismatches: 72, Indels: 49
0.83 0.10 0.07
Matches are distributed among these distances:
115 47 0.08
116 30 0.05
117 9 0.02
118 13 0.02
119 50 0.08
120 24 0.04
121 26 0.04
122 219 0.37
123 39 0.07
124 24 0.04
125 47 0.08
126 25 0.04
127 1 0.00
128 39 0.07
ACGTcount: A:0.31, C:0.30, G:0.17, T:0.22
Consensus pattern (122 bp):
AAGCCCACAAGTCAGTGGCATCCTTCTCAAAGCCCACAAGTCAGTGGCATCCTTCTCAAAGCCCA
CACAAGTCAGTGGCAACCAATTTCAAAGCCCACACAAGTCGGTGGCAACCCATTTCA
Found at i:258592 original size:20 final size:20
Alignment explanation
Indices: 258567--258604 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
258557 TTTTTACCCA
258567 AATGTATCGATACATTCTTC
1 AATGTATCGATACATTCTTC
258587 AATGTATCGATACATTCT
1 AATGTATCGATACATTCT
258605 ACCTTTTTAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.32, C:0.18, G:0.11, T:0.39
Consensus pattern (20 bp):
AATGTATCGATACATTCTTC
Found at i:258703 original size:32 final size:31
Alignment explanation
Indices: 258660--258738 Score: 113
Period size: 31 Copynumber: 2.5 Consensus size: 31
258650 CATGTATGAC
* *
258660 TGTATCGATACATTTTGTCTTTTTTTTCTAGA
1 TGTATCGATACATTTTGTC-CTTTTTTCCAGA
* *
258692 TGTATCTATACATTCTGTCCTTTTTTCCAGA
1 TGTATCGATACATTTTGTCCTTTTTTCCAGA
258723 TGTATCGATACATTTT
1 TGTATCGATACATTTT
258739 TCAATGTATC
Statistics
Matches: 41, Mismatches: 6, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
31 24 0.59
32 17 0.41
ACGTcount: A:0.20, C:0.16, G:0.11, T:0.52
Consensus pattern (31 bp):
TGTATCGATACATTTTGTCCTTTTTTCCAGA
Found at i:262689 original size:18 final size:17
Alignment explanation
Indices: 262668--262715 Score: 53
Period size: 17 Copynumber: 2.8 Consensus size: 17
262658 GTTTTTTTCA
262668 TTTTATGTTTTTTTCTTG
1 TTTTAT-TTTTTTTCTTG
*
262686 TTTTCA-TTTTTTTCTTT
1 TTTT-ATTTTTTTTCTTG
*
262703 TTTTCTTTTTTTT
1 TTTTATTTTTTTT
262716 TCTACTTTTC
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
17 21 0.81
18 4 0.15
19 1 0.04
ACGTcount: A:0.04, C:0.08, G:0.04, T:0.83
Consensus pattern (17 bp):
TTTTATTTTTTTTCTTG
Found at i:262696 original size:25 final size:24
Alignment explanation
Indices: 262662--262714 Score: 70
Period size: 25 Copynumber: 2.2 Consensus size: 24
262652 TGCATTGTTT
*
262662 TTTTCATTTTATGTTTTTTTCTTG
1 TTTTCATTTTATCTTTTTTTCTTG
* *
262686 TTTTCATTTTTTTCTTTTTTTCTTT
1 TTTTCA-TTTTATCTTTTTTTCTTG
262711 TTTT
1 TTTT
262715 TTCTACTTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
24 6 0.24
25 19 0.76
ACGTcount: A:0.06, C:0.09, G:0.04, T:0.81
Consensus pattern (24 bp):
TTTTCATTTTATCTTTTTTTCTTG
Found at i:262716 original size:18 final size:18
Alignment explanation
Indices: 262675--262733 Score: 66
Period size: 17 Copynumber: 3.3 Consensus size: 18
262665 TCATTTTATG
* *
262675 TTTTTTTCTTGTTTTC-A
1 TTTTTTTCTTCTTTTCTT
*
262692 TTTTTTTCTTTTTTTCTT
1 TTTTTTTCTTCTTTTCTT
*
262710 TTTTTTTCTACTTTTCTAT
1 TTTTTTTCTTCTTTTCT-T
262729 TTTTT
1 TTTTT
262734 ATTTAAAGGA
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
17 15 0.42
18 15 0.42
19 6 0.17
ACGTcount: A:0.05, C:0.12, G:0.02, T:0.81
Consensus pattern (18 bp):
TTTTTTTCTTCTTTTCTT
Found at i:262724 original size:10 final size:8
Alignment explanation
Indices: 262659--262714 Score: 67
Period size: 8 Copynumber: 6.9 Consensus size: 8
262649 ATCTGCATTG
262659 TTTTTTTC
1 TTTTTTTC
* * *
262667 ATTTTATG
1 TTTTTTTC
262675 TTTTTTTC
1 TTTTTTTC
*
262683 TTGTTTTC
1 TTTTTTTC
262691 ATTTTTTTC
1 -TTTTTTTC
262700 TTTTTTTC
1 TTTTTTTC
262708 TTTTTTT
1 TTTTTTT
262715 TTCTACTTTT
Statistics
Matches: 39, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
8 32 0.82
9 7 0.18
ACGTcount: A:0.05, C:0.09, G:0.04, T:0.82
Consensus pattern (8 bp):
TTTTTTTC
Found at i:266722 original size:157 final size:155
Alignment explanation
Indices: 266553--267015 Score: 559
Period size: 157 Copynumber: 3.0 Consensus size: 155
266543 CTTTAAGTTT
* *
266553 GATACCTTCGACTTAGAAGTGCCCAATATCCATAAAGGACTTAAAAAGAATTATAGATGGGATGA
1 GATACCTTCGACTTAGAAGTGCCCAATACCCCTAAAGGACTTAAAAAG-ATTATAGATGGGATGA
* * * * *
266618 ATCTATCCTAAATACCCACCTTCGGCCTAAAAACAAACCCGGTGATAACCTAGGACTTAATTCTG
65 ACCTATCCTAAATACCCACCTTCGGCATAAAAACGAACCCGGTGATAACCTAGGACTCAATT-TC
*
266683 GAAAAAATTACAAAAATGCCCCAAAAG
129 GAAAAAATTATAAAAATGCCCCAAAAG
*
266710 GATACCTTCGACTTAGAAGTGCCCAATACCCCTAAAGGATTTAAAAAGGATTATAGATGGGATGA
1 GATACCTTCGACTTAGAAGTGCCCAATACCCCTAAAGGACTTAAAAA-GATTATAGATGGGATGA
* * * * * * *
266775 ACCTATCCTAAATACCCACTTTCGGCATAAAAGCGGACCTGGTGATAACCTAAGAATCCATTTCG
65 ACCTATCCTAAATACCCACCTTCGGCATAAAAACGAACCCGGTGATAACCTAGGACTCAATTTCG
* * * *
266840 AAGAAAATTATGAAAATACCCCTAGAG
130 AA-AAAATTATAAAAATGCCCCAAAAG
* ** * *** *
266867 GAAACCTTTAACTTGGAAGTGCTTGATACCCCTAAAGGACTTAAAATGATTATAGATGGGATGAA
1 GATACCTTCGACTTAGAAGTGCCCAATACCCCTAAAGGACTTAAAAAGATTATAGATGGGATGAA
* * * * * * *
266932 CCTATCCTAAATACCCACCTTCGACATAAAAAGTGAACTCGATGATAACTTAGGACTCGATTTTG
66 CCTATCCTAAATACCCACCTTCGGCATAAAAA-CGAACCCGGTGATAACCTAGGACTCAATTTCG
266997 -AAAAATTATAAAAATGCCC
130 AAAAAATTATAAAAATGCCC
267016 TTAGGGGATA
Statistics
Matches: 259, Mismatches: 44, Indels: 8
0.83 0.14 0.03
Matches are distributed among these distances:
155 16 0.06
156 52 0.20
157 190 0.73
158 1 0.00
ACGTcount: A:0.39, C:0.21, G:0.16, T:0.24
Consensus pattern (155 bp):
GATACCTTCGACTTAGAAGTGCCCAATACCCCTAAAGGACTTAAAAAGATTATAGATGGGATGAA
CCTATCCTAAATACCCACCTTCGGCATAAAAACGAACCCGGTGATAACCTAGGACTCAATTTCGA
AAAAATTATAAAAATGCCCCAAAAG
Found at i:272310 original size:19 final size:20
Alignment explanation
Indices: 272266--272319 Score: 83
Period size: 19 Copynumber: 2.8 Consensus size: 20
272256 CTACCATTTT
**
272266 CATGTATCGATACAAGTGTG
1 CATGTATCGATACAAGTGAA
272286 CATGTATCGATACAA-TGAA
1 CATGTATCGATACAAGTGAA
272305 CATGTATCGATACAA
1 CATGTATCGATACAA
272320 AGCATAATGT
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
19 17 0.53
20 15 0.47
ACGTcount: A:0.37, C:0.17, G:0.19, T:0.28
Consensus pattern (20 bp):
CATGTATCGATACAAGTGAA
Found at i:272331 original size:20 final size:19
Alignment explanation
Indices: 272266--272336 Score: 72
Period size: 20 Copynumber: 3.6 Consensus size: 19
272256 CTACCATTTT
* **
272266 CATGTATCGATACAAGTGTG
1 CATGTATCGATACAA-AGAA
*
272286 CATGTATCGATACAATGAA
1 CATGTATCGATACAAAGAA
272305 CATGTATCGATACAAAGCATA
1 CATGTATCGATACAAAG-A-A
272326 -ATGTATCGATA
1 CATGTATCGATA
272337 TATCTGGATG
Statistics
Matches: 46, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
19 18 0.39
20 27 0.59
21 1 0.02
ACGTcount: A:0.38, C:0.15, G:0.18, T:0.28
Consensus pattern (19 bp):
CATGTATCGATACAAAGAA
Found at i:274683 original size:11 final size:11
Alignment explanation
Indices: 274631--274689 Score: 61
Period size: 10 Copynumber: 5.6 Consensus size: 11
274621 AAAAGGTGTT
*
274631 TTGATGTAAAA
1 TTGATGAAAAA
*
274642 TTGATG-AAAG
1 TTGATGAAAAA
* *
274652 TTTATGAAAAT
1 TTGATGAAAAA
274663 TTGA-GAAAAA
1 TTGATGAAAAA
274673 TTGATGAAAAA
1 TTGATGAAAAA
274684 TT-ATGA
1 TTGATGA
274690 GGGTTTTGAG
Statistics
Matches: 41, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
10 21 0.51
11 20 0.49
ACGTcount: A:0.47, C:0.00, G:0.19, T:0.34
Consensus pattern (11 bp):
TTGATGAAAAA
Found at i:279398 original size:19 final size:19
Alignment explanation
Indices: 279353--279425 Score: 83
Period size: 20 Copynumber: 3.7 Consensus size: 19
279343 CACACCCAGA
* *
279353 TGTATCGATATATATTGCAT
1 TGTATCGATACATGTT-CAT
279373 TGTATCGATACATGTTCAT
1 TGTATCGATACATGTTCAT
* **
279392 CGTATCGATACATGGACAAT
1 TGTATCGATACATGTTC-AT
279412 TGTATCGATACATG
1 TGTATCGATACATG
279426 AGATTGGCAG
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
19 17 0.37
20 29 0.63
ACGTcount: A:0.30, C:0.15, G:0.18, T:0.37
Consensus pattern (19 bp):
TGTATCGATACATGTTCAT
Found at i:279425 original size:20 final size:19
Alignment explanation
Indices: 279370--279425 Score: 76
Period size: 19 Copynumber: 2.9 Consensus size: 19
279360 ATATATATTG
**
279370 CATTGTATCGATACATGTT
1 CATTGTATCGATACATGGA
*
279389 CATCGTATCGATACATGGA
1 CATTGTATCGATACATGGA
279408 CAATTGTATCGATACATG
1 C-ATTGTATCGATACATG
279426 AGATTGGCAG
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
19 17 0.53
20 15 0.47
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.34
Consensus pattern (19 bp):
CATTGTATCGATACATGGA
Found at i:279491 original size:13 final size:13
Alignment explanation
Indices: 279470--279500 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
279460 CGATACATGG
*
279470 TACAATGTATCGA
1 TACATTGTATCGA
279483 TACATTGTATCGA
1 TACATTGTATCGA
279496 TACAT
1 TACAT
279501 GCTGAAATGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.35, C:0.16, G:0.13, T:0.35
Consensus pattern (13 bp):
TACATTGTATCGA
Found at i:279496 original size:33 final size:33
Alignment explanation
Indices: 279454--279520 Score: 100
Period size: 33 Copynumber: 2.0 Consensus size: 33
279444 CTATCACTAT
* *
279454 TTGTATCGATACATGGT-ACAATGTATCGATACA
1 TTGTATCGATACATGCTGA-AATGTATCAATACA
279487 TTGTATCGATACATGCTGAAATGTATCAATACA
1 TTGTATCGATACATGCTGAAATGTATCAATACA
279520 T
1 T
279521 AGCTTGTAAC
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
33 30 0.97
34 1 0.03
ACGTcount: A:0.34, C:0.15, G:0.16, T:0.34
Consensus pattern (33 bp):
TTGTATCGATACATGCTGAAATGTATCAATACA
Found at i:288159 original size:25 final size:26
Alignment explanation
Indices: 288131--288193 Score: 110
Period size: 25 Copynumber: 2.5 Consensus size: 26
288121 ACACACCCAG
288131 ATGTATCGATACGTCAAAA-CCTTGA
1 ATGTATCGATACGTCAAAACCCTTGA
288156 ATGTATCGATACGTCAAAACCCTTGA
1 ATGTATCGATACGTCAAAACCCTTGA
*
288182 ATGTATCAATAC
1 ATGTATCGATAC
288194 ACACCCAGAT
Statistics
Matches: 36, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
25 19 0.53
26 17 0.47
ACGTcount: A:0.37, C:0.21, G:0.14, T:0.29
Consensus pattern (26 bp):
ATGTATCGATACGTCAAAACCCTTGA
Found at i:288238 original size:13 final size:13
Alignment explanation
Indices: 288220--288248 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
288210 ATACATATTG
288220 CATTGTATCGATA
1 CATTGTATCGATA
288233 CATTGTATCGATA
1 CATTGTATCGATA
288246 CAT
1 CAT
288249 GCTCATTGTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.31, C:0.17, G:0.14, T:0.38
Consensus pattern (13 bp):
CATTGTATCGATA
Found at i:288261 original size:32 final size:33
Alignment explanation
Indices: 288203--288267 Score: 105
Period size: 32 Copynumber: 2.0 Consensus size: 33
288193 CACACCCAGA
*
288203 TGTATCGATACATATTGCATTGTATCGATACAT
1 TGTATCGATACATACTGCATTGTATCGATACAT
*
288236 TGTATCGATACATGCT-CATTGTATCGATACAT
1 TGTATCGATACATACTGCATTGTATCGATACAT
288268 GGACAATTGT
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 16 0.53
33 14 0.47
ACGTcount: A:0.29, C:0.17, G:0.15, T:0.38
Consensus pattern (33 bp):
TGTATCGATACATACTGCATTGTATCGATACAT
Found at i:288278 original size:20 final size:19
Alignment explanation
Indices: 288232--288284 Score: 79
Period size: 19 Copynumber: 2.7 Consensus size: 19
288222 TTGTATCGAT
288232 ACATTGTATCGATACATGC
1 ACATTGTATCGATACATGC
* *
288251 TCATTGTATCGATACATGG
1 ACATTGTATCGATACATGC
288270 ACAATTGTATCGATA
1 AC-ATTGTATCGATA
288285 TATGAGATTG
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
19 18 0.60
20 12 0.40
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.34
Consensus pattern (19 bp):
ACATTGTATCGATACATGC
Found at i:288352 original size:13 final size:13
Alignment explanation
Indices: 288336--288362 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
288326 TACATGGTAT
288336 AATGTATCGATAC
1 AATGTATCGATAC
288349 AATGTATCGATAC
1 AATGTATCGATAC
288362 A
1 A
288363 TGCTGAAATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
AATGTATCGATAC
Found at i:288360 original size:33 final size:33
Alignment explanation
Indices: 288318--288382 Score: 105
Period size: 33 Copynumber: 2.0 Consensus size: 33
288308 TATCACTATT
*
288318 TGTATCGATACATGGT-ATAATGTATCGATACAA
1 TGTATCGATACATGCTGA-AATGTATCGATACAA
288351 TGTATCGATACATGCTGAAATGTATCGATACA
1 TGTATCGATACATGCTGAAATGTATCGATACA
288383 TAGCCTGTAA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
33 29 0.97
34 1 0.03
ACGTcount: A:0.35, C:0.14, G:0.18, T:0.32
Consensus pattern (33 bp):
TGTATCGATACATGCTGAAATGTATCGATACAA
Found at i:291054 original size:33 final size:33
Alignment explanation
Indices: 291016--291082 Score: 100
Period size: 33 Copynumber: 2.0 Consensus size: 33
291006 GTTACAAGCT
* *
291016 ATGTATCGATACATT-TCAGCATGTATCGATACA
1 ATGTATCAATACATTAT-ACCATGTATCGATACA
291049 ATGTATCAATACATTATACCATGTATCGATACA
1 ATGTATCAATACATTATACCATGTATCGATACA
291082 A
1 A
291083 ATAGTGATAG
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
33 30 0.97
34 1 0.03
ACGTcount: A:0.37, C:0.18, G:0.12, T:0.33
Consensus pattern (33 bp):
ATGTATCAATACATTATACCATGTATCGATACA
Found at i:291067 original size:20 final size:20
Alignment explanation
Indices: 291044--291081 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
291034 GCATGTATCG
291044 ATACAATGTATCAATACATT
1 ATACAATGTATCAATACATT
* *
291064 ATACCATGTATCGATACA
1 ATACAATGTATCAATACA
291082 AATAGTGATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.42, C:0.18, G:0.08, T:0.32
Consensus pattern (20 bp):
ATACAATGTATCAATACATT
Found at i:291155 original size:19 final size:20
Alignment explanation
Indices: 291115--291166 Score: 79
Period size: 19 Copynumber: 2.6 Consensus size: 20
291105 CAATCTCATA
* *
291115 TATCGATACAATTATCCATG
1 TATCGATACAATGATACATG
291135 TATCGATACAATGA-ACATG
1 TATCGATACAATGATACATG
291154 TATCGATACAATG
1 TATCGATACAATG
291167 TATCGATACA
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
19 17 0.57
20 13 0.43
ACGTcount: A:0.38, C:0.17, G:0.13, T:0.31
Consensus pattern (20 bp):
TATCGATACAATGATACATG
Found at i:291169 original size:13 final size:13
Alignment explanation
Indices: 291151--291179 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
291141 TACAATGAAC
291151 ATGTATCGATACA
1 ATGTATCGATACA
291164 ATGTATCGATACA
1 ATGTATCGATACA
291177 ATG
1 ATG
291180 CAATATGTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.38, C:0.14, G:0.17, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:291173 original size:32 final size:33
Alignment explanation
Indices: 291132--291196 Score: 114
Period size: 32 Copynumber: 2.0 Consensus size: 33
291122 ACAATTATCC
291132 ATGTATCGATACAATG-AACATGTATCGATACA
1 ATGTATCGATACAATGCAACATGTATCGATACA
*
291164 ATGTATCGATACAATGCAATATGTATCGATACA
1 ATGTATCGATACAATGCAACATGTATCGATACA
291197 TCTGGGTGTG
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
32 16 0.52
33 15 0.48
ACGTcount: A:0.40, C:0.15, G:0.15, T:0.29
Consensus pattern (33 bp):
ATGTATCGATACAATGCAACATGTATCGATACA
Found at i:291688 original size:13 final size:13
Alignment explanation
Indices: 291670--291694 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
291660 CAATTCATCA
291670 TGTATCGATACAT
1 TGTATCGATACAT
291683 TGTATCGATACA
1 TGTATCGATACA
291695 ATGTGCCATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:291788 original size:19 final size:19
Alignment explanation
Indices: 291748--291799 Score: 77
Period size: 19 Copynumber: 2.7 Consensus size: 19
291738 CAATTTCATA
**
291748 TATCGATACAATTGTGCATG
1 TATCGATACAA-TGAACATG
291768 TATCGATACAATGAACATG
1 TATCGATACAATGAACATG
291787 TATCGATACAATG
1 TATCGATACAATG
291800 TATCGATACA
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
19 19 0.63
20 11 0.37
ACGTcount: A:0.37, C:0.15, G:0.17, T:0.31
Consensus pattern (19 bp):
TATCGATACAATGAACATG
Found at i:291802 original size:13 final size:13
Alignment explanation
Indices: 291784--291810 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
291774 TACAATGAAC
291784 ATGTATCGATACA
1 ATGTATCGATACA
291797 ATGTATCGATACA
1 ATGTATCGATACA
291810 A
1 A
291811 AGCATAATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:291806 original size:32 final size:33
Alignment explanation
Indices: 291765--291827 Score: 94
Period size: 32 Copynumber: 1.9 Consensus size: 33
291755 ACAATTGTGC
*
291765 ATGTATCGATACAATG-A-ACATGTATCGATACA
1 ATGTATCGATACAAAGCATA-ATGTATCGATACA
291797 ATGTATCGATACAAAGCATAATGTATCGATA
1 ATGTATCGATACAAAGCATAATGTATCGATA
291828 TATCTCGATG
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
32 15 0.54
33 12 0.43
34 1 0.04
ACGTcount: A:0.41, C:0.14, G:0.16, T:0.29
Consensus pattern (33 bp):
ATGTATCGATACAAAGCATAATGTATCGATACA
Found at i:292004 original size:633 final size:633
Alignment explanation
Indices: 290772--292008 Score: 1738
Period size: 633 Copynumber: 2.0 Consensus size: 633
290762 AAACTAATAA
* * * *
290772 AAACTTTGAATGCTTGGACTCTTTGTGTCTCTTGGTTGATTCTCTTTCATTTCAGCTATTGGAAG
1 AAACATTGAATGCTTGGACTCTTTGTGTCTCTTGGTTGATTCTCTTTAAGTTCAGCTATTGGAAA
** * *
290837 CTCATATTTATAGGCTTGAATGCTGATGTAGCTGTTGGAGGTTGAATGATTGAGTTACTAGTCGT
66 CTCATATTTATAGGCTTGAATGCTGACATAGCTGTTGAAGGTTGAATGATTGAGTTACTAGCCGT
* *** * *
290902 TACAAGCTTGTTTGGTTCTTGTTTTAATGCTTTTCCATAGCCATGTATCGATACAATTCATAATG
131 TACAAGCTTGTTTGGTGCTTGTGCCAATGCATTCCCATAGCCATGTATCGATACAATTCATAATG
** * *
290967 TATCGATACATTGATTTGAAATTATAGCCGTTTATAGCCGTTACAAGCTATGTATCGATACATTT
196 TATCGATACATACATTTGAAATTATAGCCGTTTATAGCCGTTACAAGCAATGTATCGATACAATT
* *
291032 CAGCATGTATCGATACAATGTATCAATACATTATACCATGTATCGATACAAATAGTGATAGGGTA
261 CAGCATGTATCGATACAATGTATCAATACAATATACCATGTATCGATACAAACAGTGATAGGGTA
291097 GCTACTACCAATCTCATATATCGATACAATTATCCATGTATCGATACAATGAACATGTATCGATA
326 GCTACTACCAATCTCATATATCGATACAATTATCCATGTATCGATACAATGAACATGTATCGATA
* * * *
291162 CAATGTATCGATACAATGCAATATGTATCGATACATCTGGGTGTGTATCGATACATTCAAGGGTT
391 CAATGTATCGATACAAAGCAATATGTATCGATACATCTCGATGTGTATCGATACATACAAGGGTT
*
291227 TTGACCTTTGTAGCCTAAGTCAACCATAATGTATCGATACAAATACCTATGTATCGATACTTTGA
456 TTGACCTTTGTAGCCTAAGTCAACCATAATGTATCGATACAAATACCCATGTATCGATACTTTGA
** *
291292 AGTATTTTTGCCTTAAAAACATTTGAATTAAGGTTCAAAAACATTTATTTACAATTCTAAAAACT
521 AGTATTTCCGCCTTAAAAACATTTGAATTAAGGTTCAAAAACATTTATTTACAACTCTAAAAACT
291357 TCCATTGATAGAAAATTACAACAATGAATGCAAAAGCTCTTAAAAATT
586 TCCATTGATAGAAAATTACAACAATGAATGCAAAAGCTCTTAAAAATT
* * *
291405 AAACATTGAATGCTTTGA-TCTCTTGATGTTTCTTGAG-TGATTCTCTTTAAGTTCAGCTGTTGG
1 AAACATTGAATGCTTGGACTCT-TTG-TGTCTCTTG-GTTGATTCTCTTTAAGTTCAGCTATTGG
* * * *
291468 AAACTCA-ATTTTATAGGCTTGAATGTTGACATA-CTCGTTGAAGGTTGAATGATTGTGTTTCTT
63 AAACTCATA-TTTATAGGCTTGAATGCTGACATAGCT-GTTGAAGGTTGAATGATTGAGTTACTA
*** * * *
291531 GCCGTT-GTTGACTTGTTTGGTGCTTGTGCCAATGCATTCCCCTTGCTATGTATCGATACAATTC
126 GCCGTTACAAG-CTTGTTTGGTGCTTGTGCCAATGCATTCCCATAGCCATGTATCGATACAATTC
* ** *
291595 ATAATGTATCGATACATACATTTGAAATTATAGTCGTTT-TAGCCGTTTGAAGCAATGTATTGAT
190 ATAATGTATCGATACATACATTTGAAATTATAGCCGTTTATAGCCGTTACAAGCAATGTATCGAT
* * * * * *
291659 ACAATTCATCATGTATCGATACATTGTATCGATACAATGTGCCATGTATCGATACAAACAGTGGT
255 ACAATTCAGCATGTATCGATACAATGTATCAATACAATATACCATGTATCGATACAAACAGTGAT
* * * *
291724 AGGGTAGCTACTGCCAATTTCATATATCGATACAATTGTGCATGTATCGATACAATGAACATGTA
320 AGGGTAGCTACTACCAATCTCATATATCGATACAATTATCCATGTATCGATACAATGAACATGTA
*
291789 TCGATACAATGTATCGATACAAAGC-ATAATGTATCGATATATCTCGATGTGTATCGATACATAC
385 TCGATACAATGTATCGATACAAAGCAAT-ATGTATCGATACATCTCGATGTGTATCGATACATAC
*
291853 AAGGGTTTTGACCTTTGTAGCTTAAGTCAACCATAATGTATCGATACAAATACCCATGTATCGAT
449 AAGGGTTTTGACCTTTGTAGCCTAAGTCAACCATAATGTATCGATACAAATACCCATGTATCGAT
* * * * * * *
291918 ACTTTGGATTATTTCCG-CTTAAAAACATTTGATTTGAGGTTCAAAAATATTTGTTTATAACTCT
514 ACTTTGAAGTATTTCCGCCTTAAAAACATTTGAATTAAGGTTCAAAAACATTTATTTACAACTCT
291982 -AAAACATT-CATTGATGTAGAAAATTAC
579 AAAAAC-TTCCATTGA--TAGAAAATTAC
292009 TTAAAACATG
Statistics
Matches: 530, Mismatches: 64, Indels: 20
0.86 0.10 0.03
Matches are distributed among these distances:
631 11 0.02
632 48 0.09
633 304 0.57
634 166 0.31
635 1 0.00
ACGTcount: A:0.31, C:0.16, G:0.17, T:0.36
Consensus pattern (633 bp):
AAACATTGAATGCTTGGACTCTTTGTGTCTCTTGGTTGATTCTCTTTAAGTTCAGCTATTGGAAA
CTCATATTTATAGGCTTGAATGCTGACATAGCTGTTGAAGGTTGAATGATTGAGTTACTAGCCGT
TACAAGCTTGTTTGGTGCTTGTGCCAATGCATTCCCATAGCCATGTATCGATACAATTCATAATG
TATCGATACATACATTTGAAATTATAGCCGTTTATAGCCGTTACAAGCAATGTATCGATACAATT
CAGCATGTATCGATACAATGTATCAATACAATATACCATGTATCGATACAAACAGTGATAGGGTA
GCTACTACCAATCTCATATATCGATACAATTATCCATGTATCGATACAATGAACATGTATCGATA
CAATGTATCGATACAAAGCAATATGTATCGATACATCTCGATGTGTATCGATACATACAAGGGTT
TTGACCTTTGTAGCCTAAGTCAACCATAATGTATCGATACAAATACCCATGTATCGATACTTTGA
AGTATTTCCGCCTTAAAAACATTTGAATTAAGGTTCAAAAACATTTATTTACAACTCTAAAAACT
TCCATTGATAGAAAATTACAACAATGAATGCAAAAGCTCTTAAAAATT
Done.