Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold31
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2401195
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 123915 characters in sequence are not A, C, G, or T
File 10 of 16
Found at i:1469353 original size:20 final size:20
Alignment explanation
Indices: 1469325--1469511 Score: 203
Period size: 20 Copynumber: 8.8 Consensus size: 20
1469315 AATTTTAACT
1469325 AAATGTATCGATACATTGAA
1 AAATGTATCGATACATTGAA
*
1469345 AAATATATCGATACATCTGGGTAAA
1 AAATGTATCGATACAT-T--G--AA
1469370 AAGATAGAATGTATCGATACATTGAA
1 AA-AT-----GTATCGATACATTGAA
* * * * *
1469396 AAATATATCAATATATTTAT
1 AAATGTATCGATACATTGAA
1469416 AAATGTATCGATACATTGAA
1 AAATGTATCGATACATTGAA
1469436 AAATGTATCGATACATTGAA
1 AAATGTATCGATACATTGAA
1469456 AAATGTATCGATACATTGAA
1 AAATGTATCGATACATTGAA
*
1469476 AAATGTATCAATACATTGAA
1 AAATGTATCGATACATTGAA
*
1469496 AAATGTATCAATACAT
1 AAATGTATCGATACAT
1469512 CTTGGTACTT
Statistics
Matches: 143, Mismatches: 13, Indels: 22
0.80 0.07 0.12
Matches are distributed among these distances:
20 116 0.81
21 1 0.01
23 1 0.01
25 6 0.04
26 6 0.04
28 1 0.01
30 1 0.01
31 11 0.08
ACGTcount: A:0.47, C:0.10, G:0.13, T:0.31
Consensus pattern (20 bp):
AAATGTATCGATACATTGAA
Found at i:1470577 original size:2 final size:2
Alignment explanation
Indices: 1470523--1470559 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
1470513 AATTTTTCTT
1470523 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1470560 GCAATAGAAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:1471820 original size:54 final size:54
Alignment explanation
Indices: 1471757--1471864 Score: 191
Period size: 54 Copynumber: 2.0 Consensus size: 54
1471747 AATATAAATG
*
1471757 AATATAAGATAATA-AAGAATATCTAAATCTATTATTTATTTAAATAAAGTAGCT
1 AATATAAGATAATACAA-AATATCTAAATCTATTATTTATTTAAATAAAGCAGCT
1471811 AATATAAGATAATACAAAATATCTAAATCTATTATTTATTTAAATAAAGCAGCT
1 AATATAAGATAATACAAAATATCTAAATCTATTATTTATTTAAATAAAGCAGCT
1471865 TTGGAAATCC
Statistics
Matches: 52, Mismatches: 1, Indels: 2
0.95 0.02 0.04
Matches are distributed among these distances:
54 50 0.96
55 2 0.04
ACGTcount: A:0.50, C:0.07, G:0.06, T:0.36
Consensus pattern (54 bp):
AATATAAGATAATACAAAATATCTAAATCTATTATTTATTTAAATAAAGCAGCT
Found at i:1474469 original size:18 final size:19
Alignment explanation
Indices: 1474437--1474472 Score: 65
Period size: 18 Copynumber: 1.9 Consensus size: 19
1474427 TGAATAAATC
1474437 ATTTTAAATTAAAATAAAA
1 ATTTTAAATTAAAATAAAA
1474456 ATTTTAAA-TAAAATAAA
1 ATTTTAAATTAAAATAAA
1474473 TTTTAATTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 9 0.53
19 8 0.47
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (19 bp):
ATTTTAAATTAAAATAAAA
Found at i:1475626 original size:11 final size:12
Alignment explanation
Indices: 1475609--1475649 Score: 50
Period size: 11 Copynumber: 3.6 Consensus size: 12
1475599 ATGAATGTAT
1475609 TTATATTATTTA
1 TTATATTATTTA
*
1475621 -TATATTTTTTA
1 TTATATTATTTA
*
1475632 TTATATTA-TAA
1 TTATATTATTTA
1475643 TTATATT
1 TTATATT
1475650 TATATAAATT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
11 19 0.76
12 6 0.24
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (12 bp):
TTATATTATTTA
Found at i:1482882 original size:79 final size:79
Alignment explanation
Indices: 1482742--1482890 Score: 194
Period size: 79 Copynumber: 1.9 Consensus size: 79
1482732 CCCTCGAAAG
* * * *
1482742 TAACAAGGTTGGAGTATCCCCAATTGTGGAAAATCAGTGTTTTGAAAATAAAATCGAGGTTGAAG
1 TAACAAGGTTGAAGTATCCCCAATAGTGAAAAATCAGTGTTTTGAAAATAAAATAGAGGTTGAAG
1482807 TATCCTATCAAAAA
66 TATCCTATCAAAAA
* * * *
1482821 TAACAGGGTTGAAGTATCCCCGATAGTGAAAAATC-GATGTTTTGGAAATAAAATTAG-GGTTGG
1 TAACAAGGTTGAAGTATCCCCAATAGTGAAAAATCAG-TGTTTTGAAAATAAAA-TAGAGGTTGA
1482884 AGTATCC
64 AGTATCC
1482891 CCGATGGTGG
Statistics
Matches: 60, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
78 1 0.02
79 57 0.95
80 2 0.03
ACGTcount: A:0.37, C:0.12, G:0.23, T:0.28
Consensus pattern (79 bp):
TAACAAGGTTGAAGTATCCCCAATAGTGAAAAATCAGTGTTTTGAAAATAAAATAGAGGTTGAAG
TATCCTATCAAAAA
Found at i:1482891 original size:51 final size:51
Alignment explanation
Indices: 1482825--1482924 Score: 155
Period size: 51 Copynumber: 2.0 Consensus size: 51
1482815 CAAAAATAAC
*
1482825 AGGGTTGAAGTATCCCCGATAGTGAAAAATCGATGTTTTGGAAATAAAATT
1 AGGGTTGAAGTATCCCCGATAGTGAAAAATCGATGTTTTGAAAATAAAATT
* * * *
1482876 AGGGTTGGAGTATCCCCGATGGTGGAAAATTGATGTTTTGAAAATAAAA
1 AGGGTTGAAGTATCCCCGATAGTGAAAAATCGATGTTTTGAAAATAAAA
1482925 CTGAGGTTAG
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
51 44 1.00
ACGTcount: A:0.36, C:0.09, G:0.26, T:0.29
Consensus pattern (51 bp):
AGGGTTGAAGTATCCCCGATAGTGAAAAATCGATGTTTTGAAAATAAAATT
Found at i:1482938 original size:51 final size:51
Alignment explanation
Indices: 1482825--1482940 Score: 146
Period size: 51 Copynumber: 2.3 Consensus size: 51
1482815 CAAAAATAAC
* *
1482825 AGGGTT-GAAGTATCCCCGATAGTGAAAAATCGATGTTTTGGAAATAAAATT
1 AGGGTTAG-AGTATCCCCGATAGTGAAAAATCGATGTTTTGAAAATAAAATG
* * * *
1482876 AGGGTTGGAGTATCCCCGATGGTGGAAAATTGATGTTTTGAAAATAAAACTG
1 AGGGTTAGAGTATCCCCGATAGTGAAAAATCGATGTTTTGAAAATAAAA-TG
1482928 A-GGTTAGAGTATC
1 AGGGTTAGAGTATC
1482941 TCGTCAAAAA
Statistics
Matches: 57, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
51 54 0.95
52 3 0.05
ACGTcount: A:0.34, C:0.09, G:0.27, T:0.29
Consensus pattern (51 bp):
AGGGTTAGAGTATCCCCGATAGTGAAAAATCGATGTTTTGAAAATAAAATG
Found at i:1482959 original size:79 final size:78
Alignment explanation
Indices: 1482876--1483110 Score: 278
Period size: 78 Copynumber: 3.0 Consensus size: 78
1482866 AAATAAAATT
*
1482876 AGGGTTGGAGTATCCCCGATGGTGGAAAATTGATGTTTTGAAAATAAAACTGAGGTTAGAGTATC
1 AGGGTTGGAGTATCCCCGATGGTGAAAAATTGATGTTTTGAAAATAAAACTGAGGTT-GAGTATC
* *
1482941 TCGTCAAAAATAAC
65 CCCTCAAAAATAAC
* *
1482955 AGGG-TGGAGTATCCCCGATGGTGAAAAATTGTTGTTTTGAAAATAAAACTAAGGTTGAAGTATC
1 AGGGTTGGAGTATCCCCGATGGTGAAAAATTGATGTTTTGAAAATAAAACTGAGGTTG-AGTATC
*
1483019 CCCTCAGAAATAAC
65 CCCTCAAAAATAAC
*** * * * * *
1483033 -GAGGTTGGAGTATCCTTAATTGTGAAAAATCGGTGTTTTAAAAATAAAA-TCGAAGTTGGAGTA
1 AG-GGTTGGAGTATCCCCGATGGTGAAAAATTGATGTTTTGAAAATAAAACT-GAGGTT-GAGTA
1483096 TCCCCTCAAAAATAA
63 TCCCCTCAAAAATAA
1483111 TAGGATTGTG
Statistics
Matches: 135, Mismatches: 16, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
77 2 0.01
78 69 0.51
79 63 0.47
80 1 0.01
ACGTcount: A:0.37, C:0.12, G:0.23, T:0.28
Consensus pattern (78 bp):
AGGGTTGGAGTATCCCCGATGGTGAAAAATTGATGTTTTGAAAATAAAACTGAGGTTGAGTATCC
CCTCAAAAATAAC
Found at i:1483213 original size:79 final size:79
Alignment explanation
Indices: 1483114--1483298 Score: 228
Period size: 79 Copynumber: 2.3 Consensus size: 79
1483104 AAAATAATAG
* * * * *
1483114 GATTGTGAAAAATCAATATTTTGGAAACAAAATCGGGGTT-AGAGTATCCCCTTAAAAATAACAG
1 GATTGTAAAAAATCAATATTTTGAAAACAAAACCAGGGTTGA-AGTATCCCCTCAAAAATAACAG
*
1483178 GGTTCGAGTATCCTC
65 GGTTCGAGTATCCCC
* *
1483193 GATTGTAAAAAATCAGTATTTTGAAAACAAAACCAGGGTTGAAGTATCCCCTCGAAAATAACAGG
1 GATTGTAAAAAATCAATATTTTGAAAACAAAACCAGGGTTGAAGTATCCCCTCAAAAATAACAGG
*
1483258 GTTGGAGTATCCCC
66 GTTCGAGTATCCCC
* ** *
1483272 GATAGTGGAAAATCGATATTTTAGAAA
1 GATTGTAAAAAATCAATATTTT-GAAA
1483299 TAAAAACATG
Statistics
Matches: 90, Mismatches: 14, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
79 85 0.94
80 5 0.06
ACGTcount: A:0.38, C:0.15, G:0.21, T:0.26
Consensus pattern (79 bp):
GATTGTAAAAAATCAATATTTTGAAAACAAAACCAGGGTTGAAGTATCCCCTCAAAAATAACAGG
GTTCGAGTATCCCC
Found at i:1487336 original size:20 final size:20
Alignment explanation
Indices: 1487260--1487334 Score: 77
Period size: 20 Copynumber: 3.9 Consensus size: 20
1487250 CTTTTACCCA
1487260 AATGTATCGATAAT-TTTTT
1 AATGTATCGATAATATTTTT
* *
1487279 AATGTATCGATAA-ATGTATG
1 AATGTATCGATAATAT-TTTT
*
1487299 AATGTATCGATACAT-TCTTT
1 AATGTATCGATA-ATATTTTT
1487319 AATGTATCGA-AATATT
1 AATGTATCGATAATATT
1487335 CTGTCTTTTT
Statistics
Matches: 45, Mismatches: 6, Indels: 10
0.74 0.10 0.16
Matches are distributed among these distances:
18 2 0.04
19 16 0.36
20 25 0.56
21 2 0.04
ACGTcount: A:0.36, C:0.08, G:0.13, T:0.43
Consensus pattern (20 bp):
AATGTATCGATAATATTTTT
Found at i:1487376 original size:20 final size:20
Alignment explanation
Indices: 1487351--1487400 Score: 100
Period size: 20 Copynumber: 2.5 Consensus size: 20
1487341 TTTTACCTAG
1487351 ATGTATCGATACATTTTTCA
1 ATGTATCGATACATTTTTCA
1487371 ATGTATCGATACATTTTTCA
1 ATGTATCGATACATTTTTCA
1487391 ATGTATCGAT
1 ATGTATCGAT
1487401 CCATCTAGTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.30, C:0.14, G:0.12, T:0.44
Consensus pattern (20 bp):
ATGTATCGATACATTTTTCA
Found at i:1487399 original size:91 final size:89
Alignment explanation
Indices: 1487211--1487400 Score: 240
Period size: 91 Copynumber: 2.1 Consensus size: 89
1487201 TTTTACCCAG
*
1487211 ATGTATCGATATATTTTTCAATGTAACAATACATTCTGTCTTTTACCCAAATGTATCGATAATTT
1 ATGTATCGATACATTTTTCAATGTAACAATACATTCTGTCTTTTACCCAAATGTATCGATAATTT
* *
1487276 TTTAATGTATCGATAAATGTATGA
66 TTCAATGTATCGATAAATGTATCA
* * * *
1487300 ATGTATCGATACATTCTTT-AATGTATCGAA-ATATTCTGTCTTTTTACCTAGATGTATCGATAC
1 ATGTATCGATACATT-TTTCAATGTAAC-AATACATTCTGTC-TTTTACCCAAATGTATCGATA-
* * *
1487363 ATTTTTCAATGTATCGATACATTTTTCA
62 ATTTTTCAATGTATCGATAAATGTATCA
1487391 ATGTATCGAT
1 ATGTATCGAT
1487401 CCATCTAGTT
Statistics
Matches: 87, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
89 30 0.34
90 24 0.28
91 33 0.38
ACGTcount: A:0.31, C:0.14, G:0.12, T:0.44
Consensus pattern (89 bp):
ATGTATCGATACATTTTTCAATGTAACAATACATTCTGTCTTTTACCCAAATGTATCGATAATTT
TTCAATGTATCGATAAATGTATCA
Found at i:1488308 original size:19 final size:21
Alignment explanation
Indices: 1488266--1488312 Score: 64
Period size: 21 Copynumber: 2.4 Consensus size: 21
1488256 TAACCTTTGA
*
1488266 CCATGCATTTTTTACTATGTT
1 CCATGCATTTTTAACTATGTT
1488287 CCATGCATTTTTAAC-ATG-T
1 CCATGCATTTTTAACTATGTT
1488306 CCA-GCAT
1 CCATGCAT
1488313 CTCATTGAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
18 4 0.16
19 4 0.16
20 3 0.12
21 14 0.56
ACGTcount: A:0.23, C:0.23, G:0.11, T:0.43
Consensus pattern (21 bp):
CCATGCATTTTTAACTATGTT
Found at i:1489367 original size:79 final size:79
Alignment explanation
Indices: 1489236--1489615 Score: 383
Period size: 79 Copynumber: 4.8 Consensus size: 79
1489226 AACCACGGGA
* * * * * * *
1489236 TTGGAGTATCCCCGATTATGGAAAATTGGTGTTTTGAAAGTAAAATCGGGGTTGGAGTATCCCAT
1 TTGGAGTATCCCCGATTATAGAAAATCGATGTTTTAAAAATAAAATCAGGGTTGGAGTATCCCCT
* *
1489301 CAAAAATAACAAGG
66 CGAAAATAACAGGG
** * * *
1489315 TTGGAGTATCCCTAATTATAGAAAATCGATATTTTAAAAATAAAATCGGGGTTGAAGTATCCCCT
1 TTGGAGTATCCCCGATTATAGAAAATCGATGTTTTAAAAATAAAATCAGGGTTGGAGTATCCCCT
*
1489380 CGAAAATAATAGGG
66 CGAAAATAACAGGG
* * * * *
1489394 TTGGAGTATCCCTGATTATAGAAAATTGGTGTATTGAAAATAAAATCAGGGTTGGAGTATCCCCT
1 TTGGAGTATCCCCGATTATAGAAAATCGATGTTTTAAAAATAAAATCAGGGTTGGAGTATCCCCT
*
1489459 CGAAAATAA-TGGG
66 CGAAAATAACAGGG
* * * ** *
1489472 ATTAGAGTATCCCCGATTAT-GAAAAATCGATGCTTTAGAAATAAGGTTAGGGTTGGAGTATCCC
1 -TTGGAGTATCCCCGATTATAG-AAAATCGATGTTTTAAAAATAAAATCAGGGTTGGAGTATCCC
1489536 CGT-GAAAATAACAGGG
64 C-TCGAAAATAACAGGG
* * * * * *
1489552 TTAGAGTATCCCCGATTGTGAGAAATTAG-TGTTTTGAAAATAAAAT-AGAAGTTGGAGTATCCC
1 TTGGAGTATCCCCGATTAT-AGAAAATCGATGTTTTAAAAATAAAATCAG-GGTTGGAGTATCCC
1489615 C
64 C
1489616 GATTGTGAAA
Statistics
Matches: 251, Mismatches: 43, Indels: 14
0.81 0.14 0.05
Matches are distributed among these distances:
78 6 0.02
79 235 0.94
80 9 0.04
81 1 0.00
ACGTcount: A:0.36, C:0.13, G:0.23, T:0.29
Consensus pattern (79 bp):
TTGGAGTATCCCCGATTATAGAAAATCGATGTTTTAAAAATAAAATCAGGGTTGGAGTATCCCCT
CGAAAATAACAGGG
Found at i:1489525 original size:158 final size:157
Alignment explanation
Indices: 1489236--1489615 Score: 453
Period size: 158 Copynumber: 2.4 Consensus size: 157
1489226 AACCACGGGA
* * *
1489236 TTGGAGTATCCCCGATTATGGAAAATTGGTGTTTTGAAAGTAAAATCGGGGTTGGAGTATCCCAT
1 TTGGAGTATCCCCGATTAT-GAAAATTGGTGTTTTGAAAATAAAATCAGGGTTGGAGTATCCCCT
* * * *
1489301 CAAAAATAACAAGGTTGGAGTATCCCTAATTATAGAAAATCGATATTTTAAAAATAAAATCGGGG
65 CAAAAATAACAAGGTTAGAGTATCCCCAATTATAGAAAATCGATACTTTAAAAATAAAATCAGGG
*
1489366 TTGAAGTATCCCC-TCGAAAATAATAGGG
130 TTGAAGTATCCCCGT-GAAAATAACAGGG
* *
1489394 TTGGAGTATCCCTGATTATAGAAAATTGGTGTATTGAAAATAAAATCAGGGTTGGAGTATCCCCT
1 TTGGAGTATCCCCGATTAT-GAAAATTGGTGTTTTGAAAATAAAATCAGGGTTGGAGTATCCCCT
* ** * * * ** *
1489459 CGAAAATAA-TGGGATTAGAGTATCCCCGATTAT-GAAAAATCGATGCTTTAGAAATAAGGTTAG
65 CAAAAATAACAAGG-TTAGAGTATCCCCAATTATAG-AAAATCGATACTTTAAAAATAAAATCAG
*
1489522 GGTTGGAGTATCCCCGTGAAAATAACAGGG
128 GGTTGAAGTATCCCCGTGAAAATAACAGGG
* * * *
1489552 TTAGAGTATCCCCGATTGTGAGAAATTAGTGTTTTGAAAATAAAAT-AGAAGTTGGAGTATCCCC
1 TTGGAGTATCCCCGATTATGA-AAATTGGTGTTTTGAAAATAAAATCAG-GGTTGGAGTATCCCC
1489616 GATTGTGAAA
Statistics
Matches: 190, Mismatches: 27, Indels: 10
0.84 0.12 0.04
Matches are distributed among these distances:
157 7 0.04
158 182 0.96
159 1 0.01
ACGTcount: A:0.36, C:0.13, G:0.23, T:0.29
Consensus pattern (157 bp):
TTGGAGTATCCCCGATTATGAAAATTGGTGTTTTGAAAATAAAATCAGGGTTGGAGTATCCCCTC
AAAAATAACAAGGTTAGAGTATCCCCAATTATAGAAAATCGATACTTTAAAAATAAAATCAGGGT
TGAAGTATCCCCGTGAAAATAACAGGG
Found at i:1489614 original size:51 final size:51
Alignment explanation
Indices: 1489551--1489664 Score: 158
Period size: 51 Copynumber: 2.2 Consensus size: 51
1489541 AAATAACAGG
* *
1489551 GTTAGAGTATCCCCGATTGTGAGAAATTAGTGTTTT-GAAAATAAAATAGAA
1 GTTAGAGTATCCCCGATTGTGAAAAATTAGTATTTTAG-AAATAAAATAGAA
* * * *
1489602 GTTGGAGTATCCCCGATTGTGAAAAATTGGTATTTTAGAAATAAAATCGAG
1 GTTAGAGTATCCCCGATTGTGAAAAATTAGTATTTTAGAAATAAAATAGAA
1489653 GTTAGAGTATCC
1 GTTAGAGTATCC
1489665 TCTGAAAAAT
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
51 54 0.98
52 1 0.02
ACGTcount: A:0.36, C:0.10, G:0.23, T:0.32
Consensus pattern (51 bp):
GTTAGAGTATCCCCGATTGTGAAAAATTAGTATTTTAGAAATAAAATAGAA
Found at i:1489743 original size:107 final size:106
Alignment explanation
Indices: 1489602--1489877 Score: 331
Period size: 107 Copynumber: 2.6 Consensus size: 106
1489592 TAAAATAGAA
* * *
1489602 GTTGGAGTATCCCCGATTGTGAAAAATTGGTATTTTAGAAATAAAATCGAGGTTAGAGTATCCTC
1 GTTGGAGTATCCCCGATTATGAAAAATTGGTATTTTAGAAATAAAATCG-GGTTGGAGTATCCCC
*
1489667 T-GAAAAATAACAGGATTGGAGTATTCCCGATGACATAACGGG
65 TAG-AAAATAACAGGATTGGAGTATTCCCGATGAAATAACGGG
* * *** **
1489709 GTTGGAATACCCCCGATTATGAAAAATCAATATTTTAGATAA-AAAGCCGGGGTTGGAGTATCCC
1 GTTGGAGTATCCCCGATTATGAAAAATTGGTATTTTAGA-AATAAAATC-GGGTTGGAGTATCCC
* * * *
1489773 CTAGGAAATAACGGGGTTGGAGTATTCCTGATGAAATAACGGG
64 CTAGAAAATAACAGGATTGGAGTATTCCCGATGAAATAACGGG
* * *
1489816 GTTGGAGTATCCCCAATTATGAAAAATTGGTGTTTTGGAAATAAAATCGGAGTTGGAGTATC
1 GTTGGAGTATCCCCGATTATGAAAAATTGGTATTTTAGAAATAAAATCGG-GTTGGAGTATC
1489878 TCCGATTGTG
Statistics
Matches: 139, Mismatches: 25, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
106 4 0.03
107 131 0.94
108 4 0.03
ACGTcount: A:0.34, C:0.13, G:0.25, T:0.28
Consensus pattern (106 bp):
GTTGGAGTATCCCCGATTATGAAAAATTGGTATTTTAGAAATAAAATCGGGTTGGAGTATCCCCT
AGAAAATAACAGGATTGGAGTATTCCCGATGAAATAACGGG
Found at i:1489796 original size:28 final size:29
Alignment explanation
Indices: 1489756--1489829 Score: 116
Period size: 28 Copynumber: 2.6 Consensus size: 29
1489746 GATAAAAAGC
1489756 CGGGGTTGGAGTATCCCCT-AGGAAATAA
1 CGGGGTTGGAGTATCCCCTGAGGAAATAA
* *
1489784 CGGGGTTGGAGTAT-TCCTGATGAAATAA
1 CGGGGTTGGAGTATCCCCTGAGGAAATAA
1489812 CGGGGTTGGAGTATCCCC
1 CGGGGTTGGAGTATCCCC
1489830 AATTATGAAA
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
27 3 0.07
28 36 0.88
29 2 0.05
ACGTcount: A:0.24, C:0.18, G:0.34, T:0.24
Consensus pattern (29 bp):
CGGGGTTGGAGTATCCCCTGAGGAAATAA
Found at i:1492342 original size:13 final size:13
Alignment explanation
Indices: 1492324--1492353 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
1492314 GTAAATCAAA
*
1492324 AATGTATTGATAC
1 AATGTATCGATAC
1492337 AATGTATCGATAC
1 AATGTATCGATAC
1492350 AATG
1 AATG
1492354 CAAAATGTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.40, C:0.10, G:0.17, T:0.33
Consensus pattern (13 bp):
AATGTATCGATAC
Found at i:1492359 original size:62 final size:61
Alignment explanation
Indices: 1492275--1492432 Score: 228
Period size: 62 Copynumber: 2.5 Consensus size: 61
1492265 AAAATACCTG
* *
1492275 AATGTATCGATACATTGTAAAATGTATCGATACATCTGGGTAAA-TCAAAAATGTATTGATAC
1 AATGTATCGATACAATG-AAAATGTATCGATACATCTGGGTAAACTC-AAAATGTATCGATAC
* *
1492337 AATGTATCGATACAATGCAAAATGTATCGATACATCTGGGTAAACTCAGAATGTATCGATAT
1 AATGTATCGATACAATG-AAAATGTATCGATACATCTGGGTAAACTCAAAATGTATCGATAC
*
1492399 AATGTATCGATACAATGAGCAATGTATCGATACA
1 AATGTATCGATACAATGA-AAATGTATCGATACA
1492433 ATGTATCGAT
Statistics
Matches: 88, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
61 1 0.01
62 85 0.97
63 2 0.02
ACGTcount: A:0.40, C:0.13, G:0.17, T:0.30
Consensus pattern (61 bp):
AATGTATCGATACAATGAAAATGTATCGATACATCTGGGTAAACTCAAAATGTATCGATAC
Found at i:1492360 original size:33 final size:33
Alignment explanation
Indices: 1492275--1492446 Score: 132
Period size: 33 Copynumber: 5.5 Consensus size: 33
1492265 AAAATACCTG
* *
1492275 AATGTATCGATACATTGTAAAATGTATCGATAC
1 AATGTATCGATACAATGCAAAATGTATCGATAC
* * * *
1492308 -A--TCTGGGTA-AAT-CAAAAATGTATTGATAC
1 AATGTATCGATACAATGC-AAAATGTATCGATAC
1492337 AATGTATCGATACAATGCAAAATGTATCGATAC
1 AATGTATCGATACAATGCAAAATGTATCGATAC
* * * * *
1492370 -A--TCTGGGTA-AACT-CAGAATGTATCGATAT
1 AATGTATCGATACAA-TGCAAAATGTATCGATAC
*
1492399 AATGTATCGATACAATG-AGCAATGTATCGATAC
1 AATGTATCGATACAATGCA-AAATGTATCGATAC
1492432 AATGTATCGATACAA
1 AATGTATCGATACAA
1492447 ATTGTGAAAA
Statistics
Matches: 106, Mismatches: 20, Indels: 26
0.70 0.13 0.17
Matches are distributed among these distances:
29 32 0.30
30 13 0.12
32 14 0.13
33 46 0.43
34 1 0.01
ACGTcount: A:0.40, C:0.13, G:0.17, T:0.30
Consensus pattern (33 bp):
AATGTATCGATACAATGCAAAATGTATCGATAC
Found at i:1492404 original size:13 final size:13
Alignment explanation
Indices: 1492386--1492446 Score: 71
Period size: 13 Copynumber: 5.2 Consensus size: 13
1492376 GTAAACTCAG
*
1492386 AATGTATCGATAT
1 AATGTATCGATAC
1492399 AATGTATCGATAC
1 AATGTATCGATAC
1492412 AATG-A--G---C
1 AATGTATCGATAC
1492419 AATGTATCGATAC
1 AATGTATCGATAC
1492432 AATGTATCGATAC
1 AATGTATCGATAC
1492445 AA
1 AA
1492447 ATTGTGAAAA
Statistics
Matches: 41, Mismatches: 1, Indels: 12
0.76 0.02 0.22
Matches are distributed among these distances:
7 5 0.12
8 1 0.02
10 2 0.05
12 1 0.02
13 32 0.78
ACGTcount: A:0.41, C:0.13, G:0.16, T:0.30
Consensus pattern (13 bp):
AATGTATCGATAC
Found at i:1499193 original size:20 final size:19
Alignment explanation
Indices: 1499148--1499220 Score: 92
Period size: 20 Copynumber: 3.7 Consensus size: 19
1499138 TAAAAAATAG
* *
1499148 AATGTATCGATACAGTGAA
1 AATGTATCGATACATTAAA
*
1499167 AATGTATCGATACATTCATA
1 AATGTATCGATACATT-AAA
*
1499187 CATGTATCGATACATTAAAA
1 AATGTATCGATACATT-AAA
1499207 AATGTATCGATACA
1 AATGTATCGATACA
1499221 AATTGTGAAA
Statistics
Matches: 46, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
19 15 0.33
20 31 0.67
ACGTcount: A:0.42, C:0.14, G:0.14, T:0.30
Consensus pattern (19 bp):
AATGTATCGATACATTAAA
Found at i:1502955 original size:42 final size:41
Alignment explanation
Indices: 1502908--1502989 Score: 110
Period size: 42 Copynumber: 2.0 Consensus size: 41
1502898 TTTTAATATT
* *
1502908 ATATAGCAGCATTTTCGATTAAAATTATCGTTAAAGTTTATC
1 ATATAGCAGCATTTTCAATTAAAA-TATCGCTAAAGTTTATC
* * *
1502950 ATATAGCAGTATTTTTAATTAAAATATCGCTAAATTTTAT
1 ATATAGCAGCATTTTCAATTAAAATATCGCTAAAGTTTAT
1502990 AAAATAATAA
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
41 14 0.40
42 21 0.60
ACGTcount: A:0.38, C:0.10, G:0.10, T:0.43
Consensus pattern (41 bp):
ATATAGCAGCATTTTCAATTAAAATATCGCTAAAGTTTATC
Found at i:1504557 original size:2 final size:2
Alignment explanation
Indices: 1504550--1504617 Score: 67
Period size: 2 Copynumber: 36.5 Consensus size: 2
1504540 TGTATACACA
* *
1504550 AT AT AT AT A- AT AT AT A- AT AT AT AT -T AT AGC AT GT AT -T AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A-T AT AT AT AT AT
1504589 AT AT AT AT AT AT AT AT -T AT A- AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1504618 CTAACACACA
Statistics
Matches: 55, Mismatches: 4, Indels: 14
0.75 0.05 0.19
Matches are distributed among these distances:
1 6 0.11
2 48 0.87
3 1 0.02
ACGTcount: A:0.49, C:0.01, G:0.03, T:0.47
Consensus pattern (2 bp):
AT
Found at i:1506926 original size:33 final size:33
Alignment explanation
Indices: 1506888--1506956 Score: 95
Period size: 33 Copynumber: 2.1 Consensus size: 33
1506878 AACTAGGTTG
* *
1506888 GAAGAAGCAAGAGAAGAA-GAAAAAAGAAGTTAT
1 GAAGAAGCAAAAGAA-AAGGAAAAAAGAAGATAT
*
1506921 GAAGAAGCAAAAGAAAAGGAAAGAAGAAGATAT
1 GAAGAAGCAAAAGAAAAGGAAAAAAGAAGATAT
1506954 GAA
1 GAA
1506957 TAACTCCAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
32 2 0.06
33 30 0.94
ACGTcount: A:0.62, C:0.03, G:0.28, T:0.07
Consensus pattern (33 bp):
GAAGAAGCAAAAGAAAAGGAAAAAAGAAGATAT
Found at i:1507273 original size:18 final size:18
Alignment explanation
Indices: 1507246--1507281 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
1507236 TGTTTTGAAG
*
1507246 TGTATTAAGATAAATTAT
1 TGTATAAAGATAAATTAT
*
1507264 TGTATAAAGATATATTAT
1 TGTATAAAGATAAATTAT
1507282 AATATAAATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.44, C:0.00, G:0.11, T:0.44
Consensus pattern (18 bp):
TGTATAAAGATAAATTAT
Found at i:1508952 original size:2 final size:2
Alignment explanation
Indices: 1508945--1508971 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
1508935 AAATTTTCTT
1508945 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1508972 GGAGATGGAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:1509105 original size:12 final size:12
Alignment explanation
Indices: 1509088--1509113 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
1509078 TCTAAAAGTA
1509088 ATAATATTAAAT
1 ATAATATTAAAT
1509100 ATAATATTAAAT
1 ATAATATTAAAT
1509112 AT
1 AT
1509114 CGTTAGAAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (12 bp):
ATAATATTAAAT
Found at i:1509226 original size:16 final size:16
Alignment explanation
Indices: 1509180--1509289 Score: 61
Period size: 16 Copynumber: 6.9 Consensus size: 16
1509170 AATAATATTA
*
1509180 AATATAATATAAAA-T
1 AATAAAATATAAAATT
* *
1509195 ATTAAATTATAAAAAATT
1 AATAAA--ATATAAAATT
*
1509213 AATAAAATATAAAAAT
1 AATAAAATATAAAATT
*
1509229 AATATAATAT--AATT
1 AATAAAATATAAAATT
1509243 --TAAATATATTAAAATT
1 AATAAA-ATA-TAAAATT
* *
1509259 TATATAATAT-AAATT
1 AATAAAATATAAAATT
*
1509274 ATTAAAATATATAAAT
1 AATAAAATATA-AAAT
1509290 ATATAATATT
Statistics
Matches: 71, Mismatches: 13, Indels: 20
0.68 0.12 0.19
Matches are distributed among these distances:
12 3 0.04
13 3 0.04
14 4 0.06
15 16 0.23
16 22 0.31
17 14 0.20
18 9 0.13
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (16 bp):
AATAAAATATAAAATT
Found at i:1509257 original size:46 final size:44
Alignment explanation
Indices: 1509166--1509295 Score: 117
Period size: 44 Copynumber: 3.0 Consensus size: 44
1509156 CTGCACGTGC
* *
1509166 AATTAATAATAT-TAAATATAATATAAAATATTAAATTATAAAA
1 AATTAATAAAATATAAAAATAATATAAAATATTAAATTATAAAA
* *
1509209 AATTAATAAAATATAAAAATAATATAATATAATTTAAA-TATATTAA
1 AATTAATAAAATATAAAAATAATATAAAAT-A-TTAAATTATA-AAA
* * *
1509255 AATTTATATAATAT--AAATTAT-TAAAATATATAAATATATAA
1 AATTAATAAAATATAAAAATAATATAAAATAT-TAAAT-TATAA
1509296 TATTTAAAAT
Statistics
Matches: 71, Mismatches: 9, Indels: 14
0.76 0.10 0.15
Matches are distributed among these distances:
41 1 0.01
42 5 0.07
43 16 0.23
44 25 0.35
45 5 0.07
46 19 0.27
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (44 bp):
AATTAATAAAATATAAAAATAATATAAAATATTAAATTATAAAA
Found at i:1509274 original size:61 final size:65
Alignment explanation
Indices: 1509171--1509298 Score: 167
Period size: 61 Copynumber: 2.0 Consensus size: 65
1509161 CGTGCAATTA
*
1509171 ATAATATTAAATATAATATAAAATATTAAATTATAAAAAATTAATAAAATATAAAAATAATATAA
1 ATAATATTAAATATAATATAAAATATTAAATAATAAAAAATTAATAAAATATAAAAAT-ATATAA
1509236 T
65 T
* * * *
1509237 ATAAT-TTAAATAT-AT-TAAAAT-TTATATAAT-ATAAATTATTAAAATATATAAATATATAAT
1 ATAATATTAAATATAATATAAAATATTAAATAATAAAAAATTAATAAAATATAAAAATATATAAT
1509297 AT
1 AT
1509299 TTAAAATATG
Statistics
Matches: 57, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
60 9 0.16
61 20 0.35
62 7 0.12
63 6 0.11
64 2 0.04
65 8 0.14
66 5 0.09
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (65 bp):
ATAATATTAAATATAATATAAAATATTAAATAATAAAAAATTAATAAAATATAAAAATATATAAT
Found at i:1509302 original size:24 final size:25
Alignment explanation
Indices: 1509181--1509307 Score: 109
Period size: 24 Copynumber: 5.0 Consensus size: 25
1509171 ATAATATTAA
*
1509181 ATATAATATAAA-ATATTAAATTAT
1 ATATAATATAAATATATTAAAATAT
* * **
1509205 AAAAAATTAATAAAATATAAAAATAATAT
1 ATATAA-T-AT-AAATATATTAA-AATAT
* *
1509234 AATATAATTTAAATATATTAAAATTT
1 -ATATAATATAAATATATTAAAATAT
1509260 ATATAATATAAAT-TATTAAAATAT
1 ATATAATATAAATATATTAAAATAT
1509284 ATA-AATATATAATAT-TTAAAATAT
1 ATATAATATA-AATATATTAAAATAT
1509308 GATTATAAAA
Statistics
Matches: 82, Mismatches: 13, Indels: 16
0.74 0.12 0.14
Matches are distributed among these distances:
23 6 0.07
24 29 0.35
25 14 0.17
26 6 0.07
27 12 0.15
28 6 0.07
29 5 0.06
30 4 0.05
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (25 bp):
ATATAATATAAATATATTAAAATAT
Found at i:1509303 original size:15 final size:14
Alignment explanation
Indices: 1509169--1509318 Score: 56
Period size: 16 Copynumber: 9.9 Consensus size: 14
1509159 CACGTGCAAT
*
1509169 TAATAATATTAAATA
1 TAAT-ATATAAAATA
1509184 T-A-ATATAAAATA
1 TAATATATAAAATA
*
1509196 TTAAATTATAAAAAATTAA
1 -T-AA-TATATAAAA-T-A
*
1509215 TAAAATATAAAA-A
1 TAATATATAAAATA
* *
1509228 TAATATAATATAATT
1 TAATAT-ATAAAATA
*
1509243 TAAATATATTAAAATT
1 T-AATATA-TAAAATA
1509259 TATATAATATAAATTATTA
1 TA-AT-ATATAAA--A-TA
*
1509278 AAATATATAAATATA
1 TAATATATAAA-ATA
*
1509293 TAATATTTAAAATA
1 TAATATATAAAATA
*
1509307 TGAT-TATAAAAT
1 TAATATATAAAAT
1509319 GTAAAAATAA
Statistics
Matches: 105, Mismatches: 14, Indels: 34
0.69 0.09 0.22
Matches are distributed among these distances:
12 9 0.09
13 14 0.13
14 12 0.11
15 16 0.15
16 27 0.26
17 19 0.18
18 5 0.05
19 3 0.03
ACGTcount: A:0.60, C:0.00, G:0.01, T:0.39
Consensus pattern (14 bp):
TAATATATAAAATA
Found at i:1509446 original size:16 final size:16
Alignment explanation
Indices: 1509427--1509460 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
1509417 TTAATAATTT
1509427 TTATATT-TATATTTTA
1 TTATATTATA-ATTTTA
1509443 TTATATTATAATTTTA
1 TTATATTATAATTTTA
1509459 TT
1 TT
1509461 TAAAATTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 15 0.88
17 2 0.12
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (16 bp):
TTATATTATAATTTTA
Found at i:1509472 original size:21 final size:20
Alignment explanation
Indices: 1509415--1509485 Score: 58
Period size: 19 Copynumber: 3.5 Consensus size: 20
1509405 TCATTAATAG
1509415 ATTTAATAATTTTTATATTTAT
1 ATTTAA-AATTTTTATATTT-T
*
1509437 ATTT--TATTATATTATAATTTT
1 ATTTAAAATT-T-TTAT-ATTTT
1509458 ATTTAAAATTTTTATA-TTT
1 ATTTAAAATTTTTATATTTT
*
1509477 ATATAAAAT
1 ATTTAAAAT
1509486 ATAATAATAA
Statistics
Matches: 41, Mismatches: 3, Indels: 13
0.72 0.05 0.23
Matches are distributed among these distances:
19 14 0.34
20 2 0.05
21 13 0.32
22 9 0.22
23 3 0.07
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (20 bp):
ATTTAAAATTTTTATATTTT
Found at i:1509496 original size:42 final size:43
Alignment explanation
Indices: 1509415--1509496 Score: 105
Period size: 42 Copynumber: 1.9 Consensus size: 43
1509405 TCATTAATAG
*** *
1509415 ATTTAATAATTTTTATATTTATATTTTATTATATTATAATTTT
1 ATTTAATAATTTTTATATTTATATAAAATTATATAATAATTTT
1509458 ATTTAA-AATTTTTATATTTATATAAAA-TATAATAATAAT
1 ATTTAATAATTTTTATATTTATATAAAATTAT-ATAATAAT
1509497 AATTAATATT
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
41 3 0.09
42 25 0.74
43 6 0.18
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (43 bp):
ATTTAATAATTTTTATATTTATATAAAATTATATAATAATTTT
Found at i:1509770 original size:10 final size:10
Alignment explanation
Indices: 1509757--1509812 Score: 51
Period size: 10 Copynumber: 5.6 Consensus size: 10
1509747 TTTTAAATTT
1509757 TTTATTTAAA
1 TTTATTTAAA
1509767 TTTATTTTAAA
1 TTTA-TTTAAA
* *
1509778 TTTAATTAGA
1 TTTATTTAAA
* *
1509788 TTAATTTATA
1 TTTATTTAAA
*
1509798 -TTATTTATA
1 TTTATTTAAA
1509807 TTTATT
1 TTTATT
1509813 ATTTAAAATA
Statistics
Matches: 38, Mismatches: 6, Indels: 4
0.79 0.12 0.08
Matches are distributed among these distances:
9 8 0.21
10 20 0.53
11 10 0.26
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (10 bp):
TTTATTTAAA
Found at i:1510188 original size:17 final size:16
Alignment explanation
Indices: 1510148--1510221 Score: 53
Period size: 18 Copynumber: 4.3 Consensus size: 16
1510138 AGAAAATATG
1510148 AATATTATAAATATATTAA
1 AATATTA-AAAT-TA-TAA
*
1510167 CATATTAAAAGTTATAA
1 AATATTAAAA-TTATAA
1510184 AATA-T-AAATTATTAA
1 AATATTAAAATTA-TAA
*
1510199 TATATTAAAATTTATATA
1 AATATTAAAA-TTATA-A
1510217 AATAT
1 AATAT
1510222 ACATAACATT
Statistics
Matches: 45, Mismatches: 4, Indels: 13
0.73 0.06 0.21
Matches are distributed among these distances:
14 3 0.07
15 9 0.20
16 2 0.04
17 11 0.24
18 13 0.29
19 7 0.16
ACGTcount: A:0.55, C:0.01, G:0.01, T:0.42
Consensus pattern (16 bp):
AATATTAAAATTATAA
Found at i:1510204 original size:32 final size:34
Alignment explanation
Indices: 1510153--1510222 Score: 108
Period size: 32 Copynumber: 2.1 Consensus size: 34
1510143 ATATGAATAT
1510153 TATAAATATATTAACATATTAAAAGTTATA-AAA
1 TATAAATATATTAACATATTAAAAGTTATATAAA
* *
1510186 TATAAAT-TATTAATATATTAAAATTTATATAAA
1 TATAAATATATTAACATATTAAAAGTTATATAAA
1510219 TATA
1 TATA
1510223 CATAACATTT
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
32 20 0.59
33 14 0.41
ACGTcount: A:0.56, C:0.01, G:0.01, T:0.41
Consensus pattern (34 bp):
TATAAATATATTAACATATTAAAAGTTATATAAA
Found at i:1510220 original size:20 final size:19
Alignment explanation
Indices: 1510192--1510250 Score: 55
Period size: 20 Copynumber: 2.9 Consensus size: 19
1510182 AAAATATAAA
*
1510192 TTATTAATATATTAAAATT
1 TTATAAATATATTAAAATT
* *
1510211 TATATAAATATACATAACATT
1 T-TATAAATATA-TTAAAATT
*
1510232 TTTTAAATATAATTAAAAT
1 TTATAAATAT-ATTAAAAT
1510251 AAGTCTATTC
Statistics
Matches: 31, Mismatches: 6, Indels: 5
0.74 0.14 0.12
Matches are distributed among these distances:
19 1 0.03
20 22 0.71
21 8 0.26
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (19 bp):
TTATAAATATATTAAAATT
Found at i:1513843 original size:12 final size:12
Alignment explanation
Indices: 1513826--1513850 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
1513816 ACAATTTTTG
1513826 TGTATCGATACA
1 TGTATCGATACA
1513838 TGTATCGATACA
1 TGTATCGATACA
1513850 T
1 T
1513851 ACTTTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (12 bp):
TGTATCGATACA
Found at i:1513844 original size:31 final size:31
Alignment explanation
Indices: 1513806--1513868 Score: 101
Period size: 31 Copynumber: 2.0 Consensus size: 31
1513796 TTACAAGCCA
*
1513806 ATGTATCGATACA-ATTTTTGTGTATCGATAC
1 ATGTATCGATACATA-CTTTGTGTATCGATAC
1513837 ATGTATCGATACATACTTTGTGTATCGATAC
1 ATGTATCGATACATACTTTGTGTATCGATAC
1513868 A
1 A
1513869 AGTTTGGCTA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
31 29 0.97
32 1 0.03
ACGTcount: A:0.30, C:0.14, G:0.16, T:0.40
Consensus pattern (31 bp):
ATGTATCGATACATACTTTGTGTATCGATAC
Found at i:1513923 original size:20 final size:20
Alignment explanation
Indices: 1513898--1513951 Score: 108
Period size: 20 Copynumber: 2.7 Consensus size: 20
1513888 AATCCCAATG
1513898 ACATGTATCGATACATTGCA
1 ACATGTATCGATACATTGCA
1513918 ACATGTATCGATACATTGCA
1 ACATGTATCGATACATTGCA
1513938 ACATGTATCGATAC
1 ACATGTATCGATAC
1513952 TTTGAATTGT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.35, C:0.20, G:0.15, T:0.30
Consensus pattern (20 bp):
ACATGTATCGATACATTGCA
Found at i:1515981 original size:23 final size:24
Alignment explanation
Indices: 1515936--1515982 Score: 62
Period size: 23 Copynumber: 2.0 Consensus size: 24
1515926 CAAAGAATTG
*
1515936 AACACAAATTCAATTAAGCACAAA
1 AACACAAATTCAATTAAGAACAAA
1515960 AACACAAA-TCAATTGAA-AACAAA
1 AACACAAATTCAATT-AAGAACAAA
1515983 TTTTCAACAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
23 11 0.52
24 10 0.48
ACGTcount: A:0.62, C:0.19, G:0.04, T:0.15
Consensus pattern (24 bp):
AACACAAATTCAATTAAGAACAAA
Found at i:1516984 original size:84 final size:84
Alignment explanation
Indices: 1516829--1516988 Score: 200
Period size: 84 Copynumber: 1.9 Consensus size: 84
1516819 AGCTTTCCAC
* * * *
1516829 TTGCAACTCATTTCTTTTCTCCTCTAATTCATTTATTTTCTTTTTAAAAGAATTATTTTCTAAAC
1 TTGCAACTCATTTCTATTCTCCTCTAATTCACTTAATTTCTTTTTAAAAGAATTATTCTCTAAAC
1516894 TCATTGATTTACTTTCATT
66 TCATTGATTTACTTTCATT
* *
1516913 TTGCAACTC-TTTCATATTCTTCTCTAATTCACTTAATTTC-TTTT-CAAGAATATCATTCTCTA
1 TTGCAACTCATTTC-TATTCTCCTCTAATTCACTTAATTTCTTTTTAAAAGAAT-T-ATTCTCTA
* *
1516975 CACTTATTGATTTA
63 AACTCATTGATTTA
1516989 TTTTTTTCTT
Statistics
Matches: 65, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
82 6 0.09
83 9 0.14
84 50 0.77
ACGTcount: A:0.26, C:0.19, G:0.04, T:0.51
Consensus pattern (84 bp):
TTGCAACTCATTTCTATTCTCCTCTAATTCACTTAATTTCTTTTTAAAAGAATTATTCTCTAAAC
TCATTGATTTACTTTCATT
Found at i:1519051 original size:20 final size:20
Alignment explanation
Indices: 1519026--1519077 Score: 70
Period size: 19 Copynumber: 2.6 Consensus size: 20
1519016 TACAAGCCAA
**
1519026 TGTATCGATACAATTTTTTG
1 TGTATCGATACAATACTTTG
1519046 TGTATCGATAC-ATACTTTG
1 TGTATCGATACAATACTTTG
*
1519065 TGTATTGATACAA
1 TGTATCGATACAA
1519078 GTTTGGCTAC
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
19 16 0.57
20 12 0.43
ACGTcount: A:0.29, C:0.12, G:0.15, T:0.44
Consensus pattern (20 bp):
TGTATCGATACAATACTTTG
Found at i:1519134 original size:20 final size:20
Alignment explanation
Indices: 1519106--1519159 Score: 99
Period size: 20 Copynumber: 2.7 Consensus size: 20
1519096 AATCCCAATG
*
1519106 ACATATATCGATACATTGCA
1 ACATGTATCGATACATTGCA
1519126 ACATGTATCGATACATTGCA
1 ACATGTATCGATACATTGCA
1519146 ACATGTATCGATAC
1 ACATGTATCGATAC
1519160 TTTGAATTGT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.37, C:0.20, G:0.13, T:0.30
Consensus pattern (20 bp):
ACATGTATCGATACATTGCA
Found at i:1520564 original size:20 final size:20
Alignment explanation
Indices: 1520527--1520580 Score: 81
Period size: 20 Copynumber: 2.6 Consensus size: 20
1520517 TTCTATAATT
*
1520527 TGTATCGATATAATAAGTGAA
1 TGTATCGATA-CATAAGTGAA
*
1520548 TGTATTGATACATAAGTGAA
1 TGTATCGATACATAAGTGAA
1520568 TGTATCGATACAT
1 TGTATCGATACAT
1520581 GTCTGAATTA
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
20 21 0.70
21 9 0.30
ACGTcount: A:0.39, C:0.07, G:0.19, T:0.35
Consensus pattern (20 bp):
TGTATCGATACATAAGTGAA
Found at i:1524253 original size:57 final size:58
Alignment explanation
Indices: 1524181--1524303 Score: 151
Period size: 58 Copynumber: 2.1 Consensus size: 58
1524171 TCATGTACAT
* * * *
1524181 TAAAAACTACTATATCATTTCGTGCATTTT-G-GTACATTTAAGTCATTTTCTATGATT
1 TAAAAACTACTATATCATTTCATACATTTTAGAG-ACATTGAAGTCATTTTCTATGATC
* * * *
1524238 TACAAACTATTATATCATTTCATACATTTTAGAGATATTGGAGTCATTTTCTATGATC
1 TAAAAACTACTATATCATTTCATACATTTTAGAGACATTGAAGTCATTTTCTATGATC
1524296 TAAAAACT
1 TAAAAACT
1524304 TTTTTGTCAT
Statistics
Matches: 55, Mismatches: 9, Indels: 3
0.82 0.13 0.04
Matches are distributed among these distances:
57 26 0.47
58 28 0.51
59 1 0.02
ACGTcount: A:0.33, C:0.14, G:0.10, T:0.43
Consensus pattern (58 bp):
TAAAAACTACTATATCATTTCATACATTTTAGAGACATTGAAGTCATTTTCTATGATC
Found at i:1525469 original size:37 final size:37
Alignment explanation
Indices: 1525393--1525469 Score: 118
Period size: 37 Copynumber: 2.1 Consensus size: 37
1525383 CTTATTTCAA
* * *
1525393 TATGAGAAAAAAGAACAAAATTTTTATCCATTTCTAG
1 TATGAGAAAAAAGAACAAAAATTTTATCCATTCCAAG
*
1525430 TATGAGAAAAGAGAACAAAAATTTTATCCATTCCAAG
1 TATGAGAAAAAAGAACAAAAATTTTATCCATTCCAAG
1525467 TAT
1 TAT
1525470 AGCATATTAG
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.47, C:0.12, G:0.12, T:0.30
Consensus pattern (37 bp):
TATGAGAAAAAAGAACAAAAATTTTATCCATTCCAAG
Found at i:1525584 original size:50 final size:49
Alignment explanation
Indices: 1525507--1525601 Score: 113
Period size: 50 Copynumber: 1.9 Consensus size: 49
1525497 TATCACAACT
1525507 CTAAAAGACTCAATTTTAGTCAATTTTGGAAAAAAAATACAAAACTAACC
1 CTAAAAGACTCAATTTTAGTCAATTTT-GAAAAAAAATACAAAACTAACC
* ** *
1525557 CTAAAAGA-TACAATTTTGGT-AAGTTTTGACGAAAAGTACAAAACT
1 CTAAAAGACT-CAATTTTAGTCAA-TTTTGAAAAAAAATACAAAACT
1525602 GATCTTAAAG
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
49 18 0.46
50 21 0.54
ACGTcount: A:0.47, C:0.14, G:0.12, T:0.27
Consensus pattern (49 bp):
CTAAAAGACTCAATTTTAGTCAATTTTGAAAAAAAATACAAAACTAACC
Found at i:1525643 original size:47 final size:49
Alignment explanation
Indices: 1525580--1525697 Score: 132
Period size: 49 Copynumber: 2.4 Consensus size: 49
1525570 TTTTGGTAAG
* * * * *
1525580 TTTTGACGAAAAGTACAAAACTGATCT-TAAAGACTC-ATTATGATCAA
1 TTTTGATGGAAAGTACAAAACTGACCTCGAAAGACTCGATTATAATCAA
* * * *
1525627 TTTTGATGGAAGGTACAAAACTTACCTCGAAAGATTCGATTTTAATCAA
1 TTTTGATGGAAAGTACAAAACTGACCTCGAAAGACTCGATTATAATCAA
*
1525676 TTTTTATGGAAAGTACAAAACT
1 TTTTGATGGAAAGTACAAAACT
1525698 AATCCTAAGA
Statistics
Matches: 58, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
47 22 0.38
48 7 0.12
49 29 0.50
ACGTcount: A:0.40, C:0.14, G:0.14, T:0.32
Consensus pattern (49 bp):
TTTTGATGGAAAGTACAAAACTGACCTCGAAAGACTCGATTATAATCAA
Found at i:1527156 original size:20 final size:20
Alignment explanation
Indices: 1527128--1527166 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
1527118 TCATTATTAA
*
1527128 TTTATTTTA-TTTCATTTTGG
1 TTTACTTTACTTT-ATTTTGG
1527148 TTTACTTTACTTTATTTTG
1 TTTACTTTACTTTATTTTG
1527167 CTTTGTCACA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 14 0.82
21 3 0.18
ACGTcount: A:0.15, C:0.08, G:0.08, T:0.69
Consensus pattern (20 bp):
TTTACTTTACTTTATTTTGG
Found at i:1527869 original size:2 final size:2
Alignment explanation
Indices: 1527862--1527892 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
1527852 ATGAATTGAC
1527862 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1527893 AGAGTATGCC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:1537711 original size:30 final size:29
Alignment explanation
Indices: 1537623--1537713 Score: 79
Period size: 24 Copynumber: 3.2 Consensus size: 29
1537613 AATTTTTAAA
1537623 ATATTTTAATATTTACATGT-TAAAATAATT
1 ATATTTTAATA-TT-CATGTATAAAATAATT
* *
1537653 ATATTTTAAGATTTATGTAT----TGAA--
1 ATATTTTAATATTCATGTATAAAAT-AATT
1537677 ATATTTTAATATTCATGTACTAAAATAATT
1 ATATTTTAATATTCATGTA-TAAAATAATT
1537707 ATATTTT
1 ATATTTT
1537714 TATGAAATTA
Statistics
Matches: 48, Mismatches: 4, Indels: 18
0.69 0.06 0.26
Matches are distributed among these distances:
24 17 0.35
25 2 0.04
26 2 0.04
28 6 0.12
29 4 0.08
30 17 0.35
ACGTcount: A:0.41, C:0.03, G:0.05, T:0.51
Consensus pattern (29 bp):
ATATTTTAATATTCATGTATAAAATAATT
Found at i:1538417 original size:23 final size:22
Alignment explanation
Indices: 1538391--1538444 Score: 58
Period size: 23 Copynumber: 2.4 Consensus size: 22
1538381 TTTATTTACT
1538391 TATAATTAAAATAATATA-TAAAA
1 TATAATTAAAATAATA-ACT-AAA
1538414 TATAAAATT-AAATAATAACTAAA
1 TAT--AATTAAAATAATAACTAAA
1538437 TATAATTA
1 TATAATTA
1538445 TACGAATAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 9
0.75 0.00 0.25
Matches are distributed among these distances:
21 4 0.15
23 10 0.37
24 9 0.33
25 4 0.15
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (22 bp):
TATAATTAAAATAATAACTAAA
Found at i:1538436 original size:24 final size:24
Alignment explanation
Indices: 1538394--1538441 Score: 64
Period size: 23 Copynumber: 2.0 Consensus size: 24
1538384 ATTTACTTAT
1538394 AATTAAAATAATATATAAAATATAA
1 AATTAAAATAATATAT-AAATATAA
1538419 AATT-AAATAATA-ACTAAATATAA
1 AATTAAAATAATATA-TAAATATAA
1538442 TTATACGAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
23 9 0.41
24 9 0.41
25 4 0.18
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (24 bp):
AATTAAAATAATATATAAATATAA
Found at i:1538984 original size:3 final size:3
Alignment explanation
Indices: 1538976--1539012 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
1538966 CAAATTGTTT
1538976 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1539013 ATTTTAATTT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:1553005 original size:22 final size:22
Alignment explanation
Indices: 1552967--1553030 Score: 76
Period size: 25 Copynumber: 2.8 Consensus size: 22
1552957 AGAAATATTT
*
1552967 TTATAAGATAA-TCAGAAGATAC
1 TTATAA-ATAATTTAGAAGATAC
1552989 TTATAAATAATTTAGAACAAGATAC
1 TTATAAATAATTTAG---AAGATAC
1553014 TTATAAATAATTTAGAA
1 TTATAAATAATTTAGAA
1553031 CTCTAAATTA
Statistics
Matches: 37, Mismatches: 1, Indels: 8
0.80 0.02 0.17
Matches are distributed among these distances:
21 4 0.11
22 11 0.30
25 22 0.59
ACGTcount: A:0.52, C:0.06, G:0.09, T:0.33
Consensus pattern (22 bp):
TTATAAATAATTTAGAAGATAC
Found at i:1553016 original size:25 final size:25
Alignment explanation
Indices: 1552982--1553031 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
1552972 AGATAATCAG
1552982 AAGATACTTATAAATAATTTAGAAC
1 AAGATACTTATAAATAATTTAGAAC
1553007 AAGATACTTATAAATAATTTAGAAC
1 AAGATACTTATAAATAATTTAGAAC
1553032 TCTAAATTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.52, C:0.08, G:0.08, T:0.32
Consensus pattern (25 bp):
AAGATACTTATAAATAATTTAGAAC
Found at i:1553943 original size:26 final size:23
Alignment explanation
Indices: 1553896--1553956 Score: 63
Period size: 23 Copynumber: 2.6 Consensus size: 23
1553886 CATTTTTGGT
*
1553896 AAAAA-ATACATTGTATTTATAAGAA
1 AAAAAGATACATTGTATTCAT---AA
1553921 AAAAAGATACATTG-ACTTCATAA
1 AAAAAGATACATTGTA-TTCATAA
1553944 AAAAAGATACATT
1 AAAAAGATACATT
1553957 AATTTAAACA
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
23 15 0.45
25 6 0.18
26 12 0.36
ACGTcount: A:0.56, C:0.08, G:0.08, T:0.28
Consensus pattern (23 bp):
AAAAAGATACATTGTATTCATAA
Found at i:1554646 original size:16 final size:16
Alignment explanation
Indices: 1554625--1554656 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
1554615 AGAAAGATCC
*
1554625 ATAACTAAAGAGTGTT
1 ATAACTAAAGAATGTT
1554641 ATAACTAAAGAATGTT
1 ATAACTAAAGAATGTT
1554657 TTCATAATGG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.47, C:0.06, G:0.16, T:0.31
Consensus pattern (16 bp):
ATAACTAAAGAATGTT
Found at i:1556544 original size:22 final size:21
Alignment explanation
Indices: 1556505--1556546 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
1556495 TTAATTTTTT
*
1556505 ATGGACCATATAAAAAATGTC
1 ATGGACCATAAAAAAAATGTC
1556526 ATGGACCATACAAAAAAATGT
1 ATGGACCATA-AAAAAAATGT
1556547 TAAAATTTCA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 10 0.53
22 9 0.47
ACGTcount: A:0.50, C:0.14, G:0.14, T:0.21
Consensus pattern (21 bp):
ATGGACCATAAAAAAAATGTC
Found at i:1556567 original size:3 final size:3
Alignment explanation
Indices: 1556559--1556589 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
1556549 AAATTTCATG
1556559 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1556590 ATGAAAAATT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:1563470 original size:49 final size:49
Alignment explanation
Indices: 1563398--1563497 Score: 191
Period size: 49 Copynumber: 2.0 Consensus size: 49
1563388 GATGAACAAC
*
1563398 AAGTTAGCAGAACGAATCAAGGTATGTGTAAAACATTCAATTTCTAAAG
1 AAGTTAGCAGAACGAATCAAGGTATGCGTAAAACATTCAATTTCTAAAG
1563447 AAGTTAGCAGAACGAATCAAGGTATGCGTAAAACATTCAATTTCTAAAG
1 AAGTTAGCAGAACGAATCAAGGTATGCGTAAAACATTCAATTTCTAAAG
1563496 AA
1 AA
1563498 CTACTGATCT
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 50 1.00
ACGTcount: A:0.44, C:0.13, G:0.18, T:0.25
Consensus pattern (49 bp):
AAGTTAGCAGAACGAATCAAGGTATGCGTAAAACATTCAATTTCTAAAG
Found at i:1568055 original size:1 final size:1
Alignment explanation
Indices: 1568049--1568073 Score: 50
Period size: 1 Copynumber: 25.0 Consensus size: 1
1568039 TTACCCTTCC
1568049 AAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAA
1568074 CAAAGACCTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 24 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:1568670 original size:26 final size:26
Alignment explanation
Indices: 1568641--1568691 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
1568631 GTTATAAATA
1568641 GCTTAATGCATAAATTGCTAATTACC
1 GCTTAATGCATAAATTGCTAATTACC
*
1568667 GCTTAATGCATAAATTGCTAGTTAC
1 GCTTAATGCATAAATTGCTAATTAC
1568692 TCTGCATTGA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.33, C:0.18, G:0.14, T:0.35
Consensus pattern (26 bp):
GCTTAATGCATAAATTGCTAATTACC
Found at i:1569378 original size:99 final size:99
Alignment explanation
Indices: 1569191--1569380 Score: 254
Period size: 99 Copynumber: 1.9 Consensus size: 99
1569181 GTATAGACCA
* * ** * * *
1569191 TATTTCTCATTTTGAAACACTTGAGTCCTGCTTCCTTAATGTTAAACATCATTTCCTGAAATTAG
1 TATTCCTCAGTTTGAAACACTTGAGTCCTGCGGCCTAAATGTTAAACATAATATCCTGAAATTAG
* *
1569256 AAGAATATAAGTTATAATGAGACATCCCCAGGAT
66 AAGAATAGAAGTTATAATAAGACATCCCCAGGAT
*
1569290 TATTCCTCAGTTTGAATCACTTGAGTCCTGCGGCCTAAATGTTAAACATAATATCCTGAAATTAG
1 TATTCCTCAGTTTGAAACACTTGAGTCCTGCGGCCTAAATGTTAAACATAATATCCTGAAATTAG
* ** *
1569355 AGGAATAGCTGTTATTATAAGACATC
66 AAGAATAGAAGTTATAATAAGACATC
1569381 TCTAACTCAA
Statistics
Matches: 77, Mismatches: 14, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
99 77 1.00
ACGTcount: A:0.33, C:0.18, G:0.15, T:0.34
Consensus pattern (99 bp):
TATTCCTCAGTTTGAAACACTTGAGTCCTGCGGCCTAAATGTTAAACATAATATCCTGAAATTAG
AAGAATAGAAGTTATAATAAGACATCCCCAGGAT
Found at i:1571599 original size:12 final size:12
Alignment explanation
Indices: 1571567--1571605 Score: 62
Period size: 12 Copynumber: 3.3 Consensus size: 12
1571557 TTTATTAGAA
*
1571567 AATATTATAAAT
1 AATATTAAAAAT
1571579 AAT-TTAAAAAT
1 AATATTAAAAAT
1571590 AATATTAAAAAT
1 AATATTAAAAAT
1571602 AATA
1 AATA
1571606 ATATAATAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
11 10 0.40
12 15 0.60
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (12 bp):
AATATTAAAAAT
Found at i:1580154 original size:10 final size:12
Alignment explanation
Indices: 1580136--1580266 Score: 53
Period size: 11 Copynumber: 10.7 Consensus size: 12
1580126 CCCTTCATTT
1580136 TCTTTTTTTCT-
1 TCTTTTTTTCTC
1580147 TCTTTTTTTCTC
1 TCTTTTTTTCTC
1580159 TCTTTTCTTT-TCC
1 TCTTTT-TTTCT-C
1580172 TCCATTATTTTTCT-
1 T-C-TT-TTTTTCTC
*
1580186 T-TCTTTTT-TC
1 TCTTTTTTTCTC
* *
1580196 TCTTTTTCTCCC
1 TCTTTTTTTCTC
1580208 TCCTTTGTTTT-TC
1 T-CTTT-TTTTCTC
1580221 T-TTCTTTTT-TC
1 TCTT-TTTTTCTC
* *
1580232 TCTTTTTATCCC
1 TCTTTTTTTCTC
*
1580244 TCATTCGTTTTTCTT
1 TC-TT--TTTTTCTC
1580259 TCTTTTTT
1 TCTTTTTT
1580267 GGTTCATTAT
Statistics
Matches: 91, Mismatches: 11, Indels: 35
0.66 0.08 0.26
Matches are distributed among these distances:
9 1 0.01
10 6 0.07
11 30 0.33
12 19 0.21
13 13 0.14
14 7 0.08
15 12 0.13
16 3 0.03
ACGTcount: A:0.03, C:0.24, G:0.02, T:0.71
Consensus pattern (12 bp):
TCTTTTTTTCTC
Found at i:1580210 original size:36 final size:36
Alignment explanation
Indices: 1580140--1580266 Score: 159
Period size: 36 Copynumber: 3.4 Consensus size: 36
1580130 TCATTTTCTT
* *
1580140 TTTTTC-TTCTTTTTTTCTCTCTTTTCTTTTCCTCCATTA
1 TTTTTCTTTC-TTTTTTCTCT-TTTTC--TCCCTCCATTG
*
1580179 TTTTTCTTTCTTTTTTCTCTTTTTCTCCCTCCTTTG
1 TTTTTCTTTCTTTTTTCTCTTTTTCTCCCTCCATTG
*
1580215 TTTTTCTTTCTTTTTTCTCTTTTTATCCCT-CATTCG
1 TTTTTCTTTCTTTTTTCTCTTTTTCTCCCTCCATT-G
1580251 TTTTTCTTTCTTTTTT
1 TTTTTCTTTCTTTTTT
1580267 GGTTCATTAT
Statistics
Matches: 81, Mismatches: 5, Indels: 7
0.87 0.05 0.08
Matches are distributed among these distances:
35 3 0.04
36 54 0.67
38 5 0.06
39 16 0.20
40 3 0.04
ACGTcount: A:0.03, C:0.24, G:0.02, T:0.71
Consensus pattern (36 bp):
TTTTTCTTTCTTTTTTCTCTTTTTCTCCCTCCATTG
Found at i:1580425 original size:10 final size:10
Alignment explanation
Indices: 1580405--1580437 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
1580395 CTGGGTCACT
1580405 TTTTCCTAGA
1 TTTTCCTAGA
1580415 TCTTT-CTAGA
1 T-TTTCCTAGA
1580425 TTTTCCTAGA
1 TTTTCCTAGA
1580435 TTT
1 TTT
1580438 AAAAAAGAAG
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
9 3 0.14
10 15 0.71
11 3 0.14
ACGTcount: A:0.18, C:0.18, G:0.09, T:0.55
Consensus pattern (10 bp):
TTTTCCTAGA
Found at i:1581224 original size:28 final size:28
Alignment explanation
Indices: 1581193--1581275 Score: 91
Period size: 28 Copynumber: 3.0 Consensus size: 28
1581183 CCAGTAAATT
1581193 TGGGCTTTAACTCATGTGCTAACTAATG
1 TGGGCTTTAACTCATGTGCTAACTAATG
*
1581221 TGGGCTTTAA-TGCGA-ATGCTAACTAATG
1 TGGGCTTTAACT-C-ATGTGCTAACTAATG
* *
1581249 TAGGCTTTGACTCATGTGC-AAGCTAAT
1 TGGGCTTTAACTCATGTGCTAA-CTAAT
1581276 ATAAGCTTTG
Statistics
Matches: 46, Mismatches: 4, Indels: 10
0.77 0.07 0.17
Matches are distributed among these distances:
27 4 0.09
28 40 0.87
29 2 0.04
ACGTcount: A:0.27, C:0.17, G:0.23, T:0.34
Consensus pattern (28 bp):
TGGGCTTTAACTCATGTGCTAACTAATG
Found at i:1581434 original size:56 final size:56
Alignment explanation
Indices: 1581139--1581434 Score: 174
Period size: 56 Copynumber: 5.3 Consensus size: 56
1581129 ATTTGGTGTG
* * * * * *
1581139 GGCTTGGACTTATGTGCCAACTAATATGGGCTTTAACGTGAATACCAG-TAAATTTG
1 GGCTTTGACTCATGTGCCAACTAATATGGGCTTTAACGAGAATGCCAGCT-AATATA
* * * * * * * *
1581195 GGCTTTAACTCATGTGCTAACTAATGTGGGCTTTAATGCGAATGCTAACTAATGTA
1 GGCTTTGACTCATGTGCCAACTAATATGGGCTTTAACGAGAATGCCAGCTAATATA
** * ** ** *
1581251 GGCTTTGACTCATGTG-CAAGCTAATATAAGCTTTGACTTGTGTGCCAGCTATTAT-
1 GGCTTTGACTCATGTGCCAA-CTAATATGGGCTTTAACGAGAATGCCAGCTAATATA
* * * * ** * * *
1581306 GG-GTT-ACTTAGGTGCCAACTAGTGCGGGCTTTGACTTAG-ATGCTAGCTAATA-A
1 GGCTTTGACTCATGTGCCAACTAATATGGGCTTTAAC-GAGAATGCCAGCTAATATA
* * * *
1581359 GGATTTCGATTCATATGCCAACTAATATGGGCTTTAACAAGAATGCCAGCTAATATA
1 GGCTTT-GACTCATGTGCCAACTAATATGGGCTTTAACGAGAATGCCAGCTAATATA
* *
1581416 GGTTTTGACTCGTGTGCCA
1 GGCTTTGACTCATGTGCCA
1581435 TTTAGTATGT
Statistics
Matches: 176, Mismatches: 54, Indels: 20
0.70 0.22 0.08
Matches are distributed among these distances:
53 31 0.18
54 9 0.05
55 6 0.03
56 123 0.70
57 7 0.04
ACGTcount: A:0.27, C:0.17, G:0.23, T:0.33
Consensus pattern (56 bp):
GGCTTTGACTCATGTGCCAACTAATATGGGCTTTAACGAGAATGCCAGCTAATATA
Found at i:1581521 original size:28 final size:28
Alignment explanation
Indices: 1581490--1581637 Score: 116
Period size: 28 Copynumber: 5.5 Consensus size: 28
1581480 TAGATGCTAG
*
1581490 CTAATGTGGGCTTTGATTCATGTTCCAA
1 CTAATGTGGGCTTTGATTCATGTGCCAA
* *
1581518 CTAA----GGCTTCGACTCATGTGCCAA
1 CTAATGTGGGCTTTGATTCATGTGCCAA
* *
1581542 CTAGTGTGGGC-TT-ACTT-AGGTGCCAA
1 CTAATGTGGGCTTTGA-TTCATGTGCCAA
*
1581568 CTAATGTGGGCTTGGACTT-A-GATGCCAA
1 CTAATGTGGGCTTTGA-TTCATG-TGCCAA
* **
1581596 CTAATATGGGCTTCAATTCATGTGCCAA
1 CTAATGTGGGCTTTGATTCATGTGCCAA
*
1581624 CTAATATGGGCTTT
1 CTAATGTGGGCTTT
1581638 AACAAAAATG
Statistics
Matches: 97, Mismatches: 13, Indels: 20
0.75 0.10 0.15
Matches are distributed among these distances:
24 20 0.21
26 19 0.20
27 6 0.06
28 51 0.53
29 1 0.01
ACGTcount: A:0.24, C:0.20, G:0.24, T:0.32
Consensus pattern (28 bp):
CTAATGTGGGCTTTGATTCATGTGCCAA
Found at i:1581534 original size:24 final size:24
Alignment explanation
Indices: 1581498--1581544 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
1581488 AGCTAATGTG
* * *
1581498 GGCTTTGATTCATGTTCCAACTAA
1 GGCTTCGACTCATGTGCCAACTAA
1581522 GGCTTCGACTCATGTGCCAACTA
1 GGCTTCGACTCATGTGCCAACTA
1581545 GTGTGGGCTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.23, C:0.26, G:0.19, T:0.32
Consensus pattern (24 bp):
GGCTTCGACTCATGTGCCAACTAA
Found at i:1581563 original size:106 final size:106
Alignment explanation
Indices: 1581422--1581627 Score: 250
Period size: 106 Copynumber: 1.9 Consensus size: 106
1581412 TATAGGTTTT
* ** * * * *
1581422 GACTCGTGTGCCATTTAGTATGTGCTTATTTAGGTGCCAGCTAGTATGGGCTCAAACTTAGATGC
1 GACTCATGTGCCAACTAGTATGGGCTTACTTAGGTGCCAACTAATATGGGCTCAAACTTAGATGC
* * * ** *
1581487 TAGCTAATGTGGGCTTTGATTCATGTTCCAACTAAGGCTTC
66 CAACTAATATGGGCTTCAATTCATGTGCCAACTAAGGCTTC
* * ***
1581528 GACTCATGTGCCAACTAGTGTGGGCTTACTTAGGTGCCAACTAATGTGGGCTTGGACTTAGATGC
1 GACTCATGTGCCAACTAGTATGGGCTTACTTAGGTGCCAACTAATATGGGCTCAAACTTAGATGC
1581593 CAACTAATATGGGCTTCAATTCATGTGCCAACTAA
66 CAACTAATATGGGCTTCAATTCATGTGCCAACTAA
1581628 TATGGGCTTT
Statistics
Matches: 82, Mismatches: 18, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
106 82 1.00
ACGTcount: A:0.24, C:0.20, G:0.24, T:0.32
Consensus pattern (106 bp):
GACTCATGTGCCAACTAGTATGGGCTTACTTAGGTGCCAACTAATATGGGCTCAAACTTAGATGC
CAACTAATATGGGCTTCAATTCATGTGCCAACTAAGGCTTC
Found at i:1581649 original size:28 final size:28
Alignment explanation
Indices: 1581562--1581669 Score: 90
Period size: 28 Copynumber: 3.9 Consensus size: 28
1581552 CTTACTTAGG
* ** * *
1581562 TGCCAACTAATGTGGGCTTGGACTTAGA
1 TGCCAACTAATATGGGCTTCAACTAAAA
* * **
1581590 TGCCAACTAATATGGGCTTCAATTCATG
1 TGCCAACTAATATGGGCTTCAACTAAAA
* *
1581618 TGCCAACTAATATGGGCTTTAACAAAAA
1 TGCCAACTAATATGGGCTTCAACTAAAA
* * *
1581646 TGCCAGCTAATGTAGGCTTCAACT
1 TGCCAACTAATATGGGCTTCAACT
1581670 CGTGTGCTAG
Statistics
Matches: 62, Mismatches: 18, Indels: 0
0.77 0.22 0.00
Matches are distributed among these distances:
28 62 1.00
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.29
Consensus pattern (28 bp):
TGCCAACTAATATGGGCTTCAACTAAAA
Found at i:1581649 original size:56 final size:56
Alignment explanation
Indices: 1581536--1581676 Score: 142
Period size: 56 Copynumber: 2.6 Consensus size: 56
1581526 TCGACTCATG
* * * * * ** *
1581536 TGCCAACTAGTGTGGGCTT-ACTT-AGGTGCCAACTAATGTGGGCTTGGACTTAGA
1 TGCCAACTAATGTGGGCTTCAATTCATGTGCCAACTAATATGGGCTTGAACAAAAA
* *
1581590 TGCCAACTAATATGGGCTTCAATTCATGTGCCAACTAATATGGGCTTTAACAAAAA
1 TGCCAACTAATGTGGGCTTCAATTCATGTGCCAACTAATATGGGCTTGAACAAAAA
* * * *
1581646 TGCCAGCTAATGTAGGCTTCAACTCGTGTGC
1 TGCCAACTAATGTGGGCTTCAATTCATGTGC
1581677 TAGCTAGTGT
Statistics
Matches: 70, Mismatches: 15, Indels: 2
0.80 0.17 0.02
Matches are distributed among these distances:
54 17 0.24
55 3 0.04
56 50 0.71
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (56 bp):
TGCCAACTAATGTGGGCTTCAATTCATGTGCCAACTAATATGGGCTTGAACAAAAA
Found at i:1582383 original size:20 final size:20
Alignment explanation
Indices: 1582351--1582405 Score: 65
Period size: 20 Copynumber: 2.8 Consensus size: 20
1582341 TTTTACCTAG
* *
1582351 ATATATTGATACATTTTTCA
1 ATATATCGATACATTTATCA
* * *
1582371 ATGTATCGATACATGTATGA
1 ATATATCGATACATTTATCA
1582391 ATATATCGATACATT
1 ATATATCGATACATT
1582406 CTGTCTTTTT
Statistics
Matches: 28, Mismatches: 7, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.36, C:0.11, G:0.11, T:0.42
Consensus pattern (20 bp):
ATATATCGATACATTTATCA
Found at i:1582401 original size:71 final size:71
Alignment explanation
Indices: 1582323--1582455 Score: 212
Period size: 71 Copynumber: 1.9 Consensus size: 71
1582313 TTCTTCAATG
* * * *
1582323 TATCGATATATTCTGTCTTTTTACCTAGATATATTGATACATTTTTCAATGTATCGATACATGTA
1 TATCGATACATTCTGTCTTTTTACCCAGATATATCGATACATTATTCAATGTATCGATACATGTA
1582388 TGAATA
66 TGAATA
* *
1582394 TATCGATACATTCTGTCTTTTTACCCAGATCTATCGATACATTATTCAATGTATTGATACAT
1 TATCGATACATTCTGTCTTTTTACCCAGATATATCGATACATTATTCAATGTATCGATACAT
1582456 CTAATTAAAA
Statistics
Matches: 56, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
71 56 1.00
ACGTcount: A:0.30, C:0.16, G:0.11, T:0.44
Consensus pattern (71 bp):
TATCGATACATTCTGTCTTTTTACCCAGATATATCGATACATTATTCAATGTATCGATACATGTA
TGAATA
Found at i:1590879 original size:13 final size:13
Alignment explanation
Indices: 1590861--1590888 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
1590851 ATACAAAGAT
1590861 CAATGTATCGATA
1 CAATGTATCGATA
1590874 CAATGTATCGATA
1 CAATGTATCGATA
1590887 CA
1 CA
1590889 TTTGAGTAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.39, C:0.18, G:0.14, T:0.29
Consensus pattern (13 bp):
CAATGTATCGATA
Found at i:1591982 original size:53 final size:52
Alignment explanation
Indices: 1591842--1592012 Score: 159
Period size: 53 Copynumber: 3.2 Consensus size: 52
1591832 ACCAATACGT
* * * *
1591842 TGATTCACGGCCAACGATATTGGGTTTACAGATGAGAAAGAATGTCAATGTGC
1 TGATTCAAGGCCAACGACATTGGGTTTAAAGATGAG-AAGAATGCCAATGTGC
** * * *
1591895 TGATTCACA-ATCAGCGACATT-AGTCTTGAAGATGAGAAGAATGCCAATGTGC
1 TGATTCA-AGGCCAACGACATTGGGT-TTAAAGATGAGAAGAATGCCAATGTGC
* *
1591947 TGATTCAAGGCCAACGACATTGGGTTTCAAAGATGATGAAG-ACGCCAATATGC
1 TGATTCAAGGCCAACGACATTGGGTTT-AAAGATGA-GAAGAATGCCAATGTGC
* *
1592000 GGATTGAAGGCCA
1 TGATTCAAGGCCA
1592013 GTAATATTGG
Statistics
Matches: 94, Mismatches: 18, Indels: 12
0.76 0.15 0.10
Matches are distributed among these distances:
51 1 0.01
52 35 0.37
53 54 0.57
54 4 0.04
ACGTcount: A:0.33, C:0.17, G:0.26, T:0.24
Consensus pattern (52 bp):
TGATTCAAGGCCAACGACATTGGGTTTAAAGATGAGAAGAATGCCAATGTGC
Found at i:1592197 original size:66 final size:66
Alignment explanation
Indices: 1592016--1592230 Score: 376
Period size: 66 Copynumber: 3.2 Consensus size: 66
1592006 AAGGCCAGTA
* * *
1592016 ATATTGGACTTAAAGATGAAGGTGAGAAAAGTGATAAAAGTTGCCAATATGTTGATTCACGGCCA
1 ATATTGGGCTTAAA-ATGGAGGTGAGAAAAGTGAT-AAAGATGCCAATATGTTGATTCACGGCCA
1592081 ACG
64 ACG
1592084 ATATTGGGCTTTAAAATGGAGGTGAGAAAAGTGATAAAGATGCCAATATGTTGATTCACGGCCAA
1 ATATTGGGC-TTAAAATGGAGGTGAGAAAAGTGATAAAGATGCCAATATGTTGATTCACGGCCAA
1592149 CG
65 CG
1592151 ATATTGGGCTTAAAATGGAGGTGAGAAAAGTGATAAAGATGCCAATATGTTGATTCACGGCCAAC
1 ATATTGGGCTTAAAATGGAGGTGAGAAAAGTGATAAAGATGCCAATATGTTGATTCACGGCCAAC
1592216 G
66 G
1592217 ATATTGGGCTTAAA
1 ATATTGGGCTTAAA
1592231 GATGAGAAAA
Statistics
Matches: 143, Mismatches: 3, Indels: 4
0.95 0.02 0.03
Matches are distributed among these distances:
66 71 0.50
67 40 0.28
68 27 0.19
69 5 0.03
ACGTcount: A:0.37, C:0.12, G:0.26, T:0.26
Consensus pattern (66 bp):
ATATTGGGCTTAAAATGGAGGTGAGAAAAGTGATAAAGATGCCAATATGTTGATTCACGGCCAAC
G
Found at i:1592288 original size:55 final size:52
Alignment explanation
Indices: 1592185--1592331 Score: 143
Period size: 55 Copynumber: 2.8 Consensus size: 52
1592175 GAAAAGTGAT
* * * *
1592185 AAAG-ATGCCAATATGTTGATTCACGGCCAACGATATTGGGCTTAAAGATGAGAA
1 AAAGAATGCCAATGTGCTGATTCACGGCCAACGACATTGGGCTGAAAGAT---AA
* * * * * *
1592239 AAAGGATGTCAATGTGCTGATTCACGGTCAGCGACATTGGTCTGGAAGATAA
1 AAAGAATGCCAATGTGCTGATTCACGGCCAACGACATTGGGCTGAAAGATAA
** *
1592291 GCAGAATGCCAATGTGCTGATTCAAGGCCAACGACATTGGG
1 AAAGAATGCCAATGTGCTGATTCACGGCCAACGACATTGGG
1592332 TTCCAAAGAT
Statistics
Matches: 75, Mismatches: 17, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
52 35 0.47
54 4 0.05
55 36 0.48
ACGTcount: A:0.33, C:0.17, G:0.27, T:0.23
Consensus pattern (52 bp):
AAAGAATGCCAATGTGCTGATTCACGGCCAACGACATTGGGCTGAAAGATAA
Found at i:1592441 original size:293 final size:274
Alignment explanation
Indices: 1592058--1592665 Score: 718
Period size: 293 Copynumber: 2.1 Consensus size: 274
1592048 GATAAAAGTT
* * * * *
1592058 GCCAATATGTTGATTCACGGCCAACGATATTGGGCTTTAAA-ATGGAGGTGAGAAAAGTGATAAA
1 GCCAATATGCTGATTCAAGGCCAGCGATATTGGAC-TTAAAGATGAAGGTGAGAAAAGTGATAAA
1592122 GATGCCAATATGTTGATTCACGGCCAACGATATTGGGCTTAAAATGGAGGTGAGAAAAGTGATAA
65 GATGCCAATATGTTGATTCACGGCCAACGATATTGGGCTT-AAA--GA--TGAGAAAA---AT--
* * * * * * *
1592187 AGATGCCAATATGTTGATTCACGGCCAACGATATTGGGCTTAAAGATGA-GAAAAAGGATGTCAA
120 -GATGCCAATATGCTGATTCAAGGCCAACAACATTGGACTTAAAGATGACG----AGGACGCCAA
* * * * *
1592251 TGTGCTGATTCACGGTCAGCGACATTGGTCTGGAAGATAAGCAGAATGCCAATGTGCTGATTCAA
180 TATGCTGATTCAAGGCCAGCGACATTGGACT-GAAGAT--GCAG-ATGCCAATGCGCTGATTCAA
* *
1592316 GGCCAACGACATTGG-GTTCCAAAGATGACGAAGAC
241 GGCCAACGACATTGGACTT--AAAGATGACAAAGAC
* * *
1592351 GCCAATATGCGGATTCAAGGCCAGCAATATTGGACTTAAAGATGAAGGTGAGGAAAGTGATAAAG
1 GCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGAGAAAAGTGATAAAG
* *
1592416 ATGCCAATATGTTGATTCACGGCCAACGATATTGGGCTTAAAGATGAGAAAAATGATGTCAATGT
66 ATGCCAATATGTTGATTCACGGCCAACGATATTGGGCTTAAAGATGAGAAAAATGATGCCAATAT
* *
1592481 GCTGATTCAAGGCCAGCAACATTGGACTTAAAGATGACGAGGGCGCCAATATGCTGATTCAAGGC
131 GCTGATTCAAGGCCAACAACATTGGACTTAAAGATGACGAGGACGCCAATATGCTGATTCAAGGC
* * * * *
1592546 CAGCGATATTGGACTTAAGATGGAGGTGCCAATGCGCTGATTCAAGGCCAGCGACATTGGACTTA
196 CAGCGACATTGGACTGAAGATGCAGATGCCAATGCGCTGATTCAAGGCCAACGACATTGGACTTA
1592611 AAGATGACAAAGAC
261 AAGATGACAAAGAC
1592625 GCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAG
1 GCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAG
1592666 GTGCCAATAT
Statistics
Matches: 279, Mismatches: 33, Indels: 25
0.83 0.10 0.07
Matches are distributed among these distances:
274 53 0.19
275 32 0.11
276 5 0.02
278 5 0.02
279 33 0.12
282 40 0.14
283 1 0.00
285 2 0.01
288 8 0.03
290 2 0.01
292 8 0.03
293 90 0.32
ACGTcount: A:0.34, C:0.16, G:0.27, T:0.23
Consensus pattern (274 bp):
GCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGAGAAAAGTGATAAAG
ATGCCAATATGTTGATTCACGGCCAACGATATTGGGCTTAAAGATGAGAAAAATGATGCCAATAT
GCTGATTCAAGGCCAACAACATTGGACTTAAAGATGACGAGGACGCCAATATGCTGATTCAAGGC
CAGCGACATTGGACTGAAGATGCAGATGCCAATGCGCTGATTCAAGGCCAACGACATTGGACTTA
AAGATGACAAAGAC
Found at i:1592759 original size:92 final size:89
Alignment explanation
Indices: 1592625--1593810 Score: 1335
Period size: 92 Copynumber: 12.9 Consensus size: 89
1592615 TGACAAAGAC
* *
1592625 GCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT-A-AAGGTGCCAATATGCTGATTCAAGG
1 GCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAGAAGGTGCCAATATGCTGATTCAAGG
* *
1592688 CCGGCTACATTGGACTTAAAGATAAAGGT
66 CCAGCTATATTGGACTT-----TAAAGGT
** * *
1592717 GCCAATATGCTGATTCAAGGCCAGCTTTATTGGACTT-A-AAGGTGCCAATGTGCTGATTCACGG
1 GCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAGAAGGTGCCAATATGCTGATTCAAGG
*
1592780 CCAGCTACATTGGACTTTAAGGTGAGGGT
66 CCAGCTATATTGGACTTTAA----A-GGT
* *
1592809 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAAGGTGCCAATATGCTGATTT
1 GCCAATATGCTGATTCAAGGCCAGCTACATTGGACTT-AA---GAAGGTGCCAATATGCTGATTC
1592874 AAGGCCAGCTATATTGGAC-TTAAAGGT
62 AAGGCCAGCTATATTGGACTTTAAAGGT
* * *
1592901 GCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT-A-AAGGTGCCAATGTGCTGATTCACGG
1 GCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAGAAGGTGCCAATATGCTGATTCAAGG
* *
1592964 CCAGCTACATTGGACTTAAAGGTGAGGGT
66 CCAGCTATATTGGACTTTAA----A-GGT
* *
1592993 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAAGGTGCCAATATGCTAATTC
1 GCCAATATGCTGATTCAAGGCCAGCTACATTGGACTT-AA---GAAGGTGCCAATATGCTGATTC
1593058 AAGGCCAGCTATATTGGAC-TTAAAGGT
62 AAGGCCAGCTATATTGGACTTTAAAGGT
* * * * * *
1593085 GCTAATGTGCTGATTCAAGGCCAGCTACATTGGACTT-A-AAGGAGCCAATGTGTTGATTCACGG
1 GCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAGAAGGTGCCAATATGCTGATTCAAGG
* *
1593148 CCAGCTACATTGGACTTAAAGGTGAGGGT
66 CCAGCTATATTGGACTTTAA----A-GGT
*
1593177 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAAGGTGCCAATATGCTGATTC
1 GCCAATATGCTGATTCAAGGCCAGCTACATTGGACTT-AA---GAAGGTGCCAATATGCTGATTC
* *
1593242 AAGGCCAACTATATTTGAC-TTAAAGGT
62 AAGGCCAGCTATATTGGACTTTAAAGGT
* *
1593269 GCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT-A-AAGGTGCCAATATGCTGATTCACGG
1 GCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAGAAGGTGCCAATATGCTGATTCAAGG
* *
1593332 CCAGCTACATTGGACTTAAAGGTGAGGGT
66 CCAGCTATATTGGACTTTAA----A-GGT
* *
1593361 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAAGGTGCTAATATGCTGATTC
1 GCCAATATGCTGATTCAAGGCCAGCTACATTGGACTT-AA---GAAGGTGCCAATATGCTGATTC
1593426 AAGGCCAGCTATATTGGAC-TTAAAGGT
62 AAGGCCAGCTATATTGGACTTTAAAGGT
*
1593453 GCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATTC
1 GCCAATATGCTGATTCAAGGCCAGCTACATTGGACTT--A-A-GAAGGTGCCAATATGCTGATTC
1593518 AAGGCCAGCTATATTGGAC-TTAAAGGT
62 AAGGCCAGCTATATTGGACTTTAAAGGT
* * *
1593545 GCCAATGTGATGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGTTGATTC
1 GCCAATATGCTGATTCAAGGCCAGCTACATTGGACTT--A-A-GAAGGTGCCAATATGCTGATTC
*
1593610 AAGGCCAGCTATATGGGAC-TTAAAGGT
62 AAGGCCAGCTATATTGGACTTTAAAGGT
* *
1593637 GCCAATGTGCTGATTCAAGGCTAGCTACATTGGACTTAAAGAAGAAGGTGCCAATATGCTGATTC
1 GCCAATATGCTGATTCAAGGCCAGCTACATTGGACTT----AAGAAGGTGCCAATATGCTGATTC
1593702 AAGGCCAGCTATATTGGAC-TTAAAGGT
62 AAGGCCAGCTATATTGGACTTTAAAGGT
* * *
1593729 GCCAATGTGCTAATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTAATTC
1 GCCAATATGCTGATTCAAGGCCAGCTACATTGGACTT--A-A-GAAGGTGCCAATATGCTGATTC
1593794 AAGGCCAGCTATATTGG
62 AAGGCCAGCTATATTGG
1593811 GCTTAGAAGG
Statistics
Matches: 968, Mismatches: 73, Indels: 106
0.84 0.06 0.09
Matches are distributed among these distances:
86 106 0.11
87 12 0.01
90 5 0.01
91 5 0.01
92 671 0.69
93 7 0.01
94 7 0.01
97 13 0.01
98 142 0.15
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.27
Consensus pattern (89 bp):
GCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAGAAGGTGCCAATATGCTGATTCAAGG
CCAGCTATATTGGACTTTAAAGGT
Found at i:1592847 original size:184 final size:180
Alignment explanation
Indices: 1592525--1593820 Score: 1648
Period size: 184 Copynumber: 7.0 Consensus size: 180
1592515 TGACGAGGGC
* * * *
1592525 GCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAGATGGAGGTGCCAATGCGCTGATTCA
1 GCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT-A-A---AGGTGCCAATGTGCTGATTCA
* * * * ** *
1592590 AGGCCAGCGACATTGGACTTAAAGATGACAAAGACGCCAATATGCTGATTCAAGGCCAGCGATAT
61 CGGCCAGCTACATTGGACTTAAAGGTG---AGGGTGCCAATATGCTGATTCAAGGCCAGCTATAT
* *
1592655 TGGACTT-A-AAGGTGCCAATATGCTGATTCAAGGCCGGCTACATTGGACTTAAAGATAAAGGT
123 TGGACTTAAGAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGAC-T-----TAAAGGT
* **
1592717 GCCAATATGCTGATTCAAGGCCAGCTTTATTGGACTTAAAGGTGCCAATGTGCTGATTCACGGCC
1 GCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGGTGCCAATGTGCTGATTCACGGCC
*
1592782 AGCTACATTGGACTTTAAGGTGAGGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTA
66 AGCTACATTGGACTTAAAGGTGAGGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT-
*
1592847 AAGGTGAAGGTGCCAATATGCTGATTTAAGGCCAGCTATATTGGACTTAAAGGT
130 AA---GAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGT
1592901 GCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGGTGCCAATGTGCTGATTCACGGCC
1 GCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGGTGCCAATGTGCTGATTCACGGCC
1592966 AGCTACATTGGACTTAAAGGTGAGGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTA
66 AGCTACATTGGACTTAAAGGTGAGGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT-
*
1593031 AAGGTGAAGGTGCCAATATGCTAATTCAAGGCCAGCTATATTGGACTTAAAGGT
130 AA---GAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGT
* * *
1593085 GCTAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGGAGCCAATGTGTTGATTCACGGCC
1 GCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGGTGCCAATGTGCTGATTCACGGCC
1593150 AGCTACATTGGACTTAAAGGTGAGGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTA
66 AGCTACATTGGACTTAAAGGTGAGGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT-
* *
1593215 AAGGTGAAGGTGCCAATATGCTGATTCAAGGCCAACTATATTTGACTTAAAGGT
130 AA---GAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGT
*
1593269 GCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGGTGCCAATATGCTGATTCACGGCC
1 GCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGGTGCCAATGTGCTGATTCACGGCC
1593334 AGCTACATTGGACTTAAAGGTGAGGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTA
66 AGCTACATTGGACTTAAAGGTGAGGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT-
*
1593399 AAGGTGAAGGTGCTAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGT
130 AA---GAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGT
*
1593453 GCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATTC
1 GCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT----A--AAGGTGCCAATGTGCTGATTC
* * * * *
1593518 AAGGCCAGCTATATTGGACTT-AA----A-GGTGCCAATGTGATGATTCAAGGCCAGCTACATTG
60 ACGGCCAGCTACATTGGACTTAAAGGTGAGGGTGCCAATATGCTGATTCAAGGCCAGCTATATTG
* *
1593577 GACTTAAAGATGAAGGTGCCAATATGTTGATTCAAGGCCAGCTATATGGGACTTAAAGGT
125 GACTT--A-A-GAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGT
* *
1593637 GCCAATGTGCTGATTCAAGGCTAGCTACATTGGACTTAAAGAAGAAGGTGCCAATATGCTGATTC
1 GCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT-----A-AAGGTGCCAATGTGCTGATTC
* * * * *
1593702 AAGGCCAGCTATATTGGACTT-AA----A-GGTGCCAATGTGCTAATTCAAGGCCAGCTACATTG
60 ACGGCCAGCTACATTGGACTTAAAGGTGAGGGTGCCAATATGCTGATTCAAGGCCAGCTATATTG
* *
1593761 GACTTAAAGATGAAGGTGCCAATATGCTAATTCAAGGCCAGCTATATTGGGCTTAGAAGG
125 GACTT--A-A-GAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTA-AAGG
1593821 GTTGCCATCG
Statistics
Matches: 1038, Mismatches: 50, Indels: 39
0.92 0.04 0.03
Matches are distributed among these distances:
184 865 0.83
185 10 0.01
186 2 0.00
187 43 0.04
188 1 0.00
189 3 0.00
190 78 0.08
191 1 0.00
192 35 0.03
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.26
Consensus pattern (180 bp):
GCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGGTGCCAATGTGCTGATTCACGGCC
AGCTACATTGGACTTAAAGGTGAGGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTA
AGAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGT
Found at i:1593083 original size:22 final size:21
Alignment explanation
Indices: 1593058--1593169 Score: 56
Period size: 22 Copynumber: 5.2 Consensus size: 21
1593048 ATGCTAATTC
1593058 AAGGCCAGCTATATTGGACTTA
1 AAGGCCAGCTA-ATTGGACTTA
* *
1593080 AAGG--TGCTAATGTGCTGA-TTC
1 AAGGCCAGCTAAT-TG--GACTTA
1593101 AAGGCCAGCTACATTGGACTTA
1 AAGGCCAGCTA-ATTGGACTTA
* *
1593123 AAGG--AGCCAATGTGTTGA-TTC
1 AAGGCCAGCTAAT-TG--GACTTA
*
1593144 ACGGCCAGCTACATTGGACTTA
1 AAGGCCAGCTA-ATTGGACTTA
1593166 AAGG
1 AAGG
1593170 TGAGGGTGCC
Statistics
Matches: 66, Mismatches: 10, Indels: 28
0.63 0.10 0.27
Matches are distributed among these distances:
19 4 0.06
20 12 0.18
21 15 0.23
22 19 0.29
23 12 0.18
24 4 0.06
ACGTcount: A:0.29, C:0.19, G:0.26, T:0.26
Consensus pattern (21 bp):
AAGGCCAGCTAATTGGACTTA
Found at i:1593842 original size:30 final size:29
Alignment explanation
Indices: 1593808--1593879 Score: 96
Period size: 30 Copynumber: 2.5 Consensus size: 29
1593798 CCAGCTATAT
1593808 TGGGC-TTAGAAGGGTTGCCA-TCGACTTGTG
1 TGGGCTTTAGAAGGGTTGCCACT-GAC-T-TG
1593838 TGGGCTTTAGAA-GGTTGCCACTGACTTG
1 TGGGCTTTAGAAGGGTTGCCACTGACTTG
1593866 TGGGCTTTAGAAGG
1 TGGGCTTTAGAAGG
1593880 AGAAAGATGC
Statistics
Matches: 39, Mismatches: 0, Indels: 7
0.85 0.00 0.15
Matches are distributed among these distances:
28 14 0.36
29 2 0.05
30 16 0.41
31 7 0.18
ACGTcount: A:0.18, C:0.15, G:0.36, T:0.31
Consensus pattern (29 bp):
TGGGCTTTAGAAGGGTTGCCACTGACTTG
Found at i:1593876 original size:28 final size:30
Alignment explanation
Indices: 1593808--1593879 Score: 98
Period size: 28 Copynumber: 2.5 Consensus size: 30
1593798 CCAGCTATAT
1593808 TGGGC-TTAGAAGGGTTGCCATCGACTTGTG
1 TGGGCTTTAGAA-GGTTGCCATCGACTTGTG
1593838 TGGGCTTTAGAAGGTTGCCA-CTGAC-T-TG
1 TGGGCTTTAGAAGGTTGCCATC-GACTTGTG
1593866 TGGGCTTTAGAAGG
1 TGGGCTTTAGAAGG
1593880 AGAAAGATGC
Statistics
Matches: 40, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
28 16 0.40
29 2 0.05
30 16 0.40
31 6 0.15
ACGTcount: A:0.18, C:0.15, G:0.36, T:0.31
Consensus pattern (30 bp):
TGGGCTTTAGAAGGTTGCCATCGACTTGTG
Found at i:1594034 original size:35 final size:34
Alignment explanation
Indices: 1593848--1594153 Score: 339
Period size: 35 Copynumber: 8.8 Consensus size: 34
1593838 TGGGCTTTAG
* * * *
1593848 AAGGTTGCCACTGACTTGTGGGCTTT-AGAAGGAGA
1 AAGG-TGCCACGGAGTTGTGGGCTTTGA-AAAGAAA
* * * * *
1593883 AAGATGCGACGGAGTCGTGGAC-TTAAAAAGGAAAA
1 AAGGTGCCACGGAGTTGTGGGCTTTGAAAA-G-AAA
* * * * *
1593918 AAGATGTCACGAAGTTGTGGACTTTGAAAAGGAA
1 AAGGTGCCACGGAGTTGTGGGCTTTGAAAAGAAA
* *
1593952 AAGGTGCCACAGAGTTGTGGGCTTTCAAAAG-AA
1 AAGGTGCCACGGAGTTGTGGGCTTTGAAAAGAAA
*
1593985 AAGGTGCCACGGAGTGGTGGGCTTTGAAAAGAAAA
1 AAGGTGCCACGGAGTTGTGGGCTTTGAAAAG-AAA
* *
1594020 AAGGTGCCATGGAGTTGTGGGCTTTAAAAAGAAA
1 AAGGTGCCACGGAGTTGTGGGCTTTGAAAAGAAA
1594054 AAGGTGCCACGGAGTTGTGGGCTTTGAAAAGAAAA
1 AAGGTGCCACGGAGTTGTGGGCTTTGAAAAG-AAA
1594089 AAGGTGCCACGGAGTTGTGGGCTTTGAAGAAAAGAAA
1 AAGGTGCCACGGAGTTGTGGGCTTT---GAAAAGAAA
1594126 AAGGTGCCACGGAGTTGTGGGCTTTGAA
1 AAGGTGCCACGGAGTTGTGGGCTTTGAA
1594154 GAAAAGATGC
Statistics
Matches: 233, Mismatches: 28, Indels: 21
0.83 0.10 0.07
Matches are distributed among these distances:
33 34 0.15
34 77 0.33
35 82 0.35
36 6 0.03
37 28 0.12
38 6 0.03
ACGTcount: A:0.34, C:0.12, G:0.34, T:0.21
Consensus pattern (34 bp):
AAGGTGCCACGGAGTTGTGGGCTTTGAAAAGAAA
Found at i:1594086 original size:69 final size:69
Alignment explanation
Indices: 1593848--1594153 Score: 368
Period size: 69 Copynumber: 4.4 Consensus size: 69
1593838 TGGGCTTTAG
* * * * * * * * *
1593848 AAGGTTGCCACTGACTTGTGGGCTTT-AGAAGGAGAAAGATGCGACGGAGTCGTGGAC-TTAAAA
1 AAGG-TGCCACGGAGTTGTGGGCTTTGAAAAGAAAAAAGGTGCCACGGAGTTGTGGGCTTTAAAA
1593911 AGGAAAA
65 A-G-AAA
* * * * * * *
1593918 AAGATGTCACGAAGTTGTGGACTTTGAAAAG-GAAAAGGTGCCACAGAGTTGTGGGCTTTCAAAA
1 AAGGTGCCACGGAGTTGTGGGCTTTGAAAAGAAAAAAGGTGCCACGGAGTTGTGGGCTTTAAAAA
1593982 G-AA
66 GAAA
* *
1593985 AAGGTGCCACGGAGTGGTGGGCTTTGAAAAGAAAAAAGGTGCCATGGAGTTGTGGGCTTTAAAAA
1 AAGGTGCCACGGAGTTGTGGGCTTTGAAAAGAAAAAAGGTGCCACGGAGTTGTGGGCTTTAAAAA
1594050 GAAA
66 GAAA
1594054 AAGGTGCCACGGAGTTGTGGGCTTTGAAAAGAAAAAAGGTGCCACGGAGTTGTGGGCTTTGAAGA
1 AAGGTGCCACGGAGTTGTGGGCTTTGAAAAGAAAAAAGGTGCCACGGAGTTGTGGGCTTT--A-A
1594119 AAAGAAA
63 AAAGAAA
1594126 AAGGTGCCACGGAGTTGTGGGCTTTGAA
1 AAGGTGCCACGGAGTTGTGGGCTTTGAA
1594154 GAAAAGATGC
Statistics
Matches: 203, Mismatches: 26, Indels: 12
0.84 0.11 0.05
Matches are distributed among these distances:
67 28 0.14
68 30 0.15
69 95 0.47
70 13 0.06
71 1 0.00
72 36 0.18
ACGTcount: A:0.34, C:0.12, G:0.34, T:0.21
Consensus pattern (69 bp):
AAGGTGCCACGGAGTTGTGGGCTTTGAAAAGAAAAAAGGTGCCACGGAGTTGTGGGCTTTAAAAA
GAAA
Found at i:1594182 original size:31 final size:30
Alignment explanation
Indices: 1594142--1594270 Score: 129
Period size: 30 Copynumber: 4.3 Consensus size: 30
1594132 CCACGGAGTT
*
1594142 GTGGGCTTTGAAGA-AAAGATGCC-CTTAAGTC
1 GTGGACTTTG-AGACAAA-ATGCCAC-TAAGTC
*
1594173 GTGGACTTTGGGACAAAATGCCACTAAGTC
1 GTGGACTTTGAGACAAAATGCCACTAAGTC
* * *
1594203 GTGGACTTTGGGACAAAATGCCACTGAGTT
1 GTGGACTTTGAGACAAAATGCCACTAAGTC
* * * *
1594233 GTGGACTTTGA-AGAGATTGCCACTGAGTC
1 GTGGACTTTGAGACAAAATGCCACTAAGTC
1594262 GTGGACTTT
1 GTGGACTTT
1594271 AAGAAGTTAT
Statistics
Matches: 87, Mismatches: 9, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
29 23 0.26
30 51 0.59
31 13 0.15
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.27
Consensus pattern (30 bp):
GTGGACTTTGAGACAAAATGCCACTAAGTC
Found at i:1594194 original size:30 final size:30
Alignment explanation
Indices: 1594167--1594270 Score: 138
Period size: 30 Copynumber: 3.5 Consensus size: 30
1594157 AAGATGCCCT
1594167 TAAGTCGTGGACTTTGGGACAAAATGCCAC
1 TAAGTCGTGGACTTTGGGACAAAATGCCAC
1594197 TAAGTCGTGGACTTTGGGACAAAATGCCAC
1 TAAGTCGTGGACTTTGGGACAAAATGCCAC
* * * * * *
1594227 TGAGTTGTGGACTTT-GAAGAGATTGCCAC
1 TAAGTCGTGGACTTTGGGACAAAATGCCAC
*
1594256 TGAGTCGTGGACTTT
1 TAAGTCGTGGACTTT
1594271 AAGAAGTTAT
Statistics
Matches: 67, Mismatches: 7, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
29 24 0.36
30 43 0.64
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.28
Consensus pattern (30 bp):
TAAGTCGTGGACTTTGGGACAAAATGCCAC
Found at i:1598730 original size:19 final size:21
Alignment explanation
Indices: 1598705--1598757 Score: 83
Period size: 19 Copynumber: 2.6 Consensus size: 21
1598695 GTAGCCAAAC
*
1598705 TTGTATCGATACAC-AAAATA
1 TTGTATCGATACACAAAAAAA
1598725 -TGTATCGATACACAAAAAAA
1 TTGTATCGATACACAAAAAAA
1598745 TTGTATCGATACA
1 TTGTATCGATACA
1598758 TTGGCTTGTA
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
19 13 0.43
20 5 0.17
21 12 0.40
ACGTcount: A:0.45, C:0.15, G:0.11, T:0.28
Consensus pattern (21 bp):
TTGTATCGATACACAAAAAAA
Found at i:1602824 original size:15 final size:15
Alignment explanation
Indices: 1602804--1602835 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
1602794 ATAAAAATGT
*
1602804 TCAAAATGAGGAAGC
1 TCAAAATGAAGAAGC
1602819 TCAAAATGAAGAAGC
1 TCAAAATGAAGAAGC
1602834 TC
1 TC
1602836 CAAACGAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.47, C:0.16, G:0.22, T:0.16
Consensus pattern (15 bp):
TCAAAATGAAGAAGC
Found at i:1604935 original size:13 final size:13
Alignment explanation
Indices: 1604917--1604954 Score: 67
Period size: 13 Copynumber: 2.9 Consensus size: 13
1604907 CATTTTTCTT
1604917 TGTATCGATACAA
1 TGTATCGATACAA
*
1604930 TGTATCGATACAC
1 TGTATCGATACAA
1604943 TGTATCGATACA
1 TGTATCGATACA
1604955 GGGGGATTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.34, C:0.18, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1607387 original size:18 final size:19
Alignment explanation
Indices: 1607366--1607406 Score: 57
Period size: 20 Copynumber: 2.2 Consensus size: 19
1607356 AATTGTCAAA
1607366 ACAC-TTAAAAGTATCGAT
1 ACACATTAAAAGTATCGAT
*
1607384 ACACAGTTCAAAGTATCGAT
1 ACACA-TTAAAAGTATCGAT
1607404 ACA
1 ACA
1607407 TGTTGCAATG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 4 0.20
20 16 0.80
ACGTcount: A:0.44, C:0.20, G:0.12, T:0.24
Consensus pattern (19 bp):
ACACATTAAAAGTATCGAT
Found at i:1607427 original size:20 final size:19
Alignment explanation
Indices: 1607373--1607428 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 19
1607363 AAAACACTTA
*
1607373 AAAGTATCGATACACAGTTC
1 AAAGTATCGATACA-TGTTC
1607393 AAAGTATCGATACATGTTGC
1 AAAGTATCGATACATGTT-C
*
1607413 AATGTATCGATACATG
1 AAAGTATCGATACATG
1607429 AAAAAGATGT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
19 3 0.09
20 30 0.91
ACGTcount: A:0.38, C:0.16, G:0.18, T:0.29
Consensus pattern (19 bp):
AAAGTATCGATACATGTTC
Found at i:1607504 original size:19 final size:21
Alignment explanation
Indices: 1607479--1607531 Score: 83
Period size: 19 Copynumber: 2.6 Consensus size: 21
1607469 GTAGCCAAAC
*
1607479 TTGTATCGATACAC-AAAATA
1 TTGTATCGATACACAAAAAAA
1607499 -TGTATCGATACACAAAAAAA
1 TTGTATCGATACACAAAAAAA
1607519 TTGTATCGATACA
1 TTGTATCGATACA
1607532 TTGGCTTGTA
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
19 13 0.43
20 5 0.17
21 12 0.40
ACGTcount: A:0.45, C:0.15, G:0.11, T:0.28
Consensus pattern (21 bp):
TTGTATCGATACACAAAAAAA
Found at i:1611153 original size:52 final size:52
Alignment explanation
Indices: 1611078--1611203 Score: 216
Period size: 52 Copynumber: 2.4 Consensus size: 52
1611068 AATATGAAAT
1611078 TTTGCCTGAATGTATCGATACATTTCATAGTGTATCGATACATCTGGGCAAA
1 TTTGCCTGAATGTATCGATACATTTCATAGTGTATCGATACATCTGGGCAAA
* *
1611130 TTTGCCTGTATGTATCGATACATTTCATAGTGTATCGATATATCTGGGCAAA
1 TTTGCCTGAATGTATCGATACATTTCATAGTGTATCGATACATCTGGGCAAA
* *
1611182 TTTGTCTGCATGTATCGATACA
1 TTTGCCTGAATGTATCGATACA
1611204 AAGATCAGTG
Statistics
Matches: 70, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
52 70 1.00
ACGTcount: A:0.27, C:0.17, G:0.19, T:0.37
Consensus pattern (52 bp):
TTTGCCTGAATGTATCGATACATTTCATAGTGTATCGATACATCTGGGCAAA
Found at i:1611214 original size:52 final size:52
Alignment explanation
Indices: 1611078--1611223 Score: 186
Period size: 52 Copynumber: 2.8 Consensus size: 52
1611068 AATATGAAAT
* ** *
1611078 TTTGCCTGAATGTATCGATACATTTCATAGTGTATCGATACATCTGGGCAAA
1 TTTGCCTGCATGTATCGATACATAACATAGTGTATCGATATATCTGGGCAAA
* **
1611130 TTTGCCTGTATGTATCGATACATTTCATAGTGTATCGATATATCTGGGCAAA
1 TTTGCCTGCATGTATCGATACATAACATAGTGTATCGATATATCTGGGCAAA
* * *
1611182 TTTGTCTGCATGTATCGATACA-AAGATCAGTGTATCTATATA
1 TTTGCCTGCATGTATCGATACATAACAT-AGTGTATCGATATA
1611224 ATGTATCGAT
Statistics
Matches: 85, Mismatches: 8, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
51 2 0.02
52 83 0.98
ACGTcount: A:0.29, C:0.16, G:0.18, T:0.37
Consensus pattern (52 bp):
TTTGCCTGCATGTATCGATACATAACATAGTGTATCGATATATCTGGGCAAA
Found at i:1611301 original size:19 final size:19
Alignment explanation
Indices: 1611277--1611343 Score: 92
Period size: 19 Copynumber: 3.8 Consensus size: 19
1611267 CAGTAGCTAA
1611277 TTATGTATCGATACAACAC
1 TTATGTATCGATACAACAC
1611296 TTATGTATCGAT---ACA-
1 TTATGTATCGATACAACAC
1611311 -T-TGTATCGATACAACAC
1 TTATGTATCGATACAACAC
1611328 TTATGTATCGATACAA
1 TTATGTATCGATACAA
1611344 ATCGTTGAAT
Statistics
Matches: 42, Mismatches: 0, Indels: 12
0.78 0.00 0.22
Matches are distributed among these distances:
13 9 0.21
14 1 0.02
16 6 0.14
18 1 0.02
19 25 0.60
ACGTcount: A:0.36, C:0.18, G:0.12, T:0.34
Consensus pattern (19 bp):
TTATGTATCGATACAACAC
Found at i:1611317 original size:13 final size:13
Alignment explanation
Indices: 1611299--1611323 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1611289 ACAACACTTA
1611299 TGTATCGATACAT
1 TGTATCGATACAT
1611312 TGTATCGATACA
1 TGTATCGATACA
1611324 ACACTTATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1611321 original size:32 final size:32
Alignment explanation
Indices: 1611280--1611342 Score: 126
Period size: 32 Copynumber: 2.0 Consensus size: 32
1611270 TAGCTAATTA
1611280 TGTATCGATACAACACTTATGTATCGATACAT
1 TGTATCGATACAACACTTATGTATCGATACAT
1611312 TGTATCGATACAACACTTATGTATCGATACA
1 TGTATCGATACAACACTTATGTATCGATACA
1611343 AATCGTTGAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.35, C:0.19, G:0.13, T:0.33
Consensus pattern (32 bp):
TGTATCGATACAACACTTATGTATCGATACAT
Found at i:1624791 original size:7 final size:7
Alignment explanation
Indices: 1624765--1624854 Score: 51
Period size: 7 Copynumber: 12.7 Consensus size: 7
1624755 CGTCCTCCGC
1624765 AAAAAA-
1 AAAAAAG
1624771 AAAAGAAG
1 AAAA-AAG
1624779 AAAAAAG
1 AAAAAAG
* *
1624786 AGAAAAC
1 AAAAAAG
*
1624793 AAACAAAC
1 AAA-AAAG
*
1624801 AGAAAAG
1 AAAAAAG
1624808 AAAAACA-
1 AAAAA-AG
*
1624815 AACAAA-
1 AAAAAAG
*
1624821 CAAAAAG
1 AAAAAAG
*
1624828 AAAAAAC
1 AAAAAAG
*
1624835 AAACAAAC
1 AAA-AAAG
1624843 AAAAAAG
1 AAAAAAG
1624850 AAAAA
1 AAAAA
1624855 CAAACAAACA
Statistics
Matches: 66, Mismatches: 12, Indels: 11
0.74 0.13 0.12
Matches are distributed among these distances:
6 9 0.14
7 39 0.59
8 18 0.27
ACGTcount: A:0.81, C:0.10, G:0.09, T:0.00
Consensus pattern (7 bp):
AAAAAAG
Found at i:1624814 original size:21 final size:20
Alignment explanation
Indices: 1624780--1624879 Score: 146
Period size: 21 Copynumber: 4.8 Consensus size: 20
1624770 AAAAAGAAGA
1624780 AAAAAGAGAAAACAAACAAAC
1 AAAAAGA-AAAACAAACAAAC
1624801 AGAAAAGAAAAACAAACAAAC
1 A-AAAAGAAAAACAAACAAAC
1624822 AAAAAGAAAAAACAAACAAAC
1 AAAAAG-AAAAACAAACAAAC
1624843 AAAAAAGAAAAACAAACAAAC
1 -AAAAAGAAAAACAAACAAAC
*
1624864 AAAAAAAACAAACAAA
1 AAAAAGAA-AAACAAA
1624880 AAGGGTCCGG
Statistics
Matches: 74, Mismatches: 1, Indels: 8
0.89 0.01 0.10
Matches are distributed among these distances:
20 12 0.16
21 50 0.68
22 12 0.16
ACGTcount: A:0.80, C:0.14, G:0.06, T:0.00
Consensus pattern (20 bp):
AAAAAGAAAAACAAACAAAC
Found at i:1624815 original size:17 final size:16
Alignment explanation
Indices: 1624780--1624882 Score: 86
Period size: 17 Copynumber: 6.4 Consensus size: 16
1624770 AAAAAGAAGA
1624780 AAAAAGAGAAAACAAAC
1 AAAAAGA-AAAACAAAC
* *
1624797 AAACAGAAAAGAAAAAC
1 AAAAAGAAAA-ACAAAC
* * *
1624814 AAACA-AACAA-AAAG
1 AAAAAGAAAAACAAAC
*
1624828 AAAAA-ACAAACAAAC
1 AAAAAGAAAAACAAAC
1624843 AAAAAAGAAAAACAAAC
1 -AAAAAGAAAAACAAAC
*
1624860 AAACAAAAAAAACAAAC
1 AAA-AAGAAAAACAAAC
1624877 AAAAAG
1 AAAAAG
1624883 GGTCCGGATG
Statistics
Matches: 70, Mismatches: 11, Indels: 11
0.76 0.12 0.12
Matches are distributed among these distances:
14 10 0.14
15 4 0.06
16 16 0.23
17 40 0.57
ACGTcount: A:0.80, C:0.14, G:0.07, T:0.00
Consensus pattern (16 bp):
AAAAAGAAAAACAAAC
Found at i:1624822 original size:25 final size:23
Alignment explanation
Indices: 1624776--1624881 Score: 101
Period size: 25 Copynumber: 4.5 Consensus size: 23
1624766 AAAAAAAAAG
*
1624776 AAGAAAAAAGAGA-AAACAAACAA
1 AAGAAAAAA-AAACAAACAAACAA
1624799 ACAGAAAAGAAAAACAAACAAACAAA
1 A-AGAAAA-AAAAACAAACAAAC-AA
1624825 AAGAAAAAACAAACAAAC-AA-AA
1 AAGAAAAAA-AAACAAACAAACAA
* *
1624847 AAGAAAAACAAACAAACAAAAAA
1 AAGAAAAAAAAACAAACAAACAA
* *
1624870 AACAAACAAAAA
1 AAGAAAAAAAAA
1624882 GGGTCCGGAT
Statistics
Matches: 71, Mismatches: 5, Indels: 14
0.79 0.06 0.16
Matches are distributed among these distances:
21 8 0.11
22 12 0.17
23 12 0.17
24 12 0.17
25 24 0.34
26 3 0.04
ACGTcount: A:0.80, C:0.13, G:0.07, T:0.00
Consensus pattern (23 bp):
AAGAAAAAAAAACAAACAAACAA
Found at i:1624826 original size:42 final size:42
Alignment explanation
Indices: 1624780--1624879 Score: 166
Period size: 42 Copynumber: 2.4 Consensus size: 42
1624770 AAAAAGAAGA
* *
1624780 AAAAAGAGAAAACAAACAAACAGAAAAGAAAAACAAACAAAC
1 AAAAAGAAAAAACAAACAAACAAAAAAGAAAAACAAACAAAC
1624822 AAAAAGAAAAAACAAACAAACAAAAAAGAAAAACAAACAAAC
1 AAAAAGAAAAAACAAACAAACAAAAAAGAAAAACAAACAAAC
1624864 AAAAA-AAACAAACAAA
1 AAAAAGAAA-AAACAAA
1624880 AAGGGTCCGG
Statistics
Matches: 55, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
41 3 0.05
42 52 0.95
ACGTcount: A:0.80, C:0.14, G:0.06, T:0.00
Consensus pattern (42 bp):
AAAAAGAAAAAACAAACAAACAAAAAAGAAAAACAAACAAAC
Found at i:1626353 original size:28 final size:28
Alignment explanation
Indices: 1626313--1626451 Score: 145
Period size: 28 Copynumber: 4.9 Consensus size: 28
1626303 CCTCACCCTG
1626313 TCAAAAGCCCACAAGTCAGTGGCAACCT
1 TCAAAAGCCCACAAGTCAGTGGCAACCT
*
1626341 TCAAAAGCCCACAAGTCAGTGGCACCCTTTT
1 TCAAAAGCCCACAAGTCAGTGGCAACC---T
* * *
1626372 TC-GAAGCCCACAAGTCAGTGGCATCTTT
1 TCAAAAGCCCACAAGTCAGTGGCAAC-CT
* *
1626400 TCCAAAGCCCACAAGCCAGTGGCAACCT
1 TCAAAAGCCCACAAGTCAGTGGCAACCT
* * * *
1626428 TTAAAAGTCTACAACTCAGTGGCA
1 TCAAAAGCCCACAAGTCAGTGGCA
1626452 CTCTTTTTCC
Statistics
Matches: 92, Mismatches: 14, Indels: 10
0.79 0.12 0.09
Matches are distributed among these distances:
28 48 0.52
29 20 0.22
30 21 0.23
31 3 0.03
ACGTcount: A:0.32, C:0.31, G:0.18, T:0.19
Consensus pattern (28 bp):
TCAAAAGCCCACAAGTCAGTGGCAACCT
Found at i:1626381 original size:30 final size:30
Alignment explanation
Indices: 1626316--1626429 Score: 146
Period size: 29 Copynumber: 3.9 Consensus size: 30
1626306 CACCCTGTCA
1626316 AAAGCCCACAAGTCAGTGGCAACC---TTC
1 AAAGCCCACAAGTCAGTGGCAACCTTTTTC
*
1626343 AAAAGCCCACAAGTCAGTGGCACCCTTTTTC
1 -AAAGCCCACAAGTCAGTGGCAACCTTTTTC
* * *
1626374 GAAGCCCACAAGTCAGTGGC-ATCTTTTCC
1 AAAGCCCACAAGTCAGTGGCAACCTTTTTC
*
1626403 AAAGCCCACAAGCCAGTGGCAACCTTT
1 AAAGCCCACAAGTCAGTGGCAACCTTT
1626430 AAAAGTCTAC
Statistics
Matches: 74, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
28 23 0.31
29 24 0.32
30 24 0.32
31 3 0.04
ACGTcount: A:0.30, C:0.32, G:0.18, T:0.19
Consensus pattern (30 bp):
AAAGCCCACAAGTCAGTGGCAACCTTTTTC
Found at i:1626423 original size:59 final size:58
Alignment explanation
Indices: 1626317--1626429 Score: 172
Period size: 59 Copynumber: 1.9 Consensus size: 58
1626307 ACCCTGTCAA
* *
1626317 AAGCCCACAAGTCAGTGGCAACCTTCAAAAGCCCACAAGTCAGTGGCACCCTTTTTCG
1 AAGCCCACAAGTCAGTGGCAACCTTCAAAAGCCCACAAGCCAGTGGCAACCTTTTTCG
* * *
1626375 AAGCCCACAAGTCAGTGGCATCTTTTCCAAAGCCCACAAGCCAGTGGCAACCTTT
1 AAGCCCACAAGTCAGTGGCAAC-CTTCAAAAGCCCACAAGCCAGTGGCAACCTTT
1626430 AAAAGTCTAC
Statistics
Matches: 49, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
58 21 0.43
59 28 0.57
ACGTcount: A:0.29, C:0.33, G:0.19, T:0.19
Consensus pattern (58 bp):
AAGCCCACAAGTCAGTGGCAACCTTCAAAAGCCCACAAGCCAGTGGCAACCTTTTTCG
Found at i:1626461 original size:59 final size:58
Alignment explanation
Indices: 1626315--1626458 Score: 157
Period size: 58 Copynumber: 2.5 Consensus size: 58
1626305 TCACCCTGTC
* * * * * *
1626315 AAAAGCCCACAAGTCAGTGGCAAC-CTTCAAAAGCCCACAAGTCAGTGGCACCCTTTTT
1 AAAAGCCCACAACTCAGTGGCATCTTTTCCAAAGCCCACAAGCCAGTGGCAACC-TTTT
** *
1626373 CGAAGCCCACAAGTCAGTGGCATCTTTTCCAAAGCCCACAAGCCAGTGGCAACC-TTT
1 AAAAGCCCACAACTCAGTGGCATCTTTTCCAAAGCCCACAAGCCAGTGGCAACCTTTT
* *
1626430 AAAAGTCTACAACTCAGTGGCACTCTTTT
1 AAAAGCCCACAACTCAGTGGCA-TCTTTT
1626459 TCCTTTTAAG
Statistics
Matches: 72, Mismatches: 12, Indels: 4
0.82 0.14 0.05
Matches are distributed among these distances:
57 20 0.28
58 27 0.38
59 25 0.35
ACGTcount: A:0.31, C:0.31, G:0.17, T:0.22
Consensus pattern (58 bp):
AAAAGCCCACAACTCAGTGGCATCTTTTCCAAAGCCCACAAGCCAGTGGCAACCTTTT
Found at i:1626476 original size:34 final size:34
Alignment explanation
Indices: 1626438--1626526 Score: 124
Period size: 34 Copynumber: 2.6 Consensus size: 34
1626428 TTAAAAGTCT
*
1626438 ACAACTCAGTGGCACTCTTTTTCCTTTTAAGCCC
1 ACAACTCTGTGGCACTCTTTTTCCTTTTAAGCCC
* * *
1626472 ACAACTCTGTGGCACTTTTTTTCCTTTTCAGTCC
1 ACAACTCTGTGGCACTCTTTTTCCTTTTAAGCCC
* *
1626506 ACAACTTTGTGGCACCCTTTT
1 ACAACTCTGTGGCACTCTTTT
1626527 AAGCCCACAA
Statistics
Matches: 48, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
34 48 1.00
ACGTcount: A:0.18, C:0.30, G:0.12, T:0.39
Consensus pattern (34 bp):
ACAACTCTGTGGCACTCTTTTTCCTTTTAAGCCC
Found at i:1626525 original size:27 final size:27
Alignment explanation
Indices: 1626494--1626565 Score: 81
Period size: 27 Copynumber: 2.6 Consensus size: 27
1626484 CACTTTTTTT
* **
1626494 CCTTTTCAGTCCACAACTTTGTGGCAC
1 CCTTTTCAGCCCACAACTCGGTGGCAC
* *
1626521 CCTTTTAAGCCCACAAGTCGGTGGCAC
1 CCTTTTCAGCCCACAACTCGGTGGCAC
1626548 CCTTTTCAAAGCCCACAA
1 CCTTTTC--AGCCCACAA
1626566 GTTAGTGGCA
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
27 28 0.76
29 9 0.24
ACGTcount: A:0.24, C:0.35, G:0.15, T:0.26
Consensus pattern (27 bp):
CCTTTTCAGCCCACAACTCGGTGGCAC
Found at i:1626573 original size:29 final size:29
Alignment explanation
Indices: 1626504--1626596 Score: 95
Period size: 27 Copynumber: 3.3 Consensus size: 29
1626494 CCTTTTCAGT
* *
1626504 CCACAACTTTGTGGCACCCTTTT--AAGC
1 CCACAAGTTAGTGGCACCCTTTTCAAAGC
**
1626531 CCACAAGTCGGTGGCACCCTTTTCAAAGC
1 CCACAAGTTAGTGGCACCCTTTTCAAAGC
*
1626560 CCACAAGTTAGTGGCAACC--TTCAAAAGC
1 CCACAAGTTAGTGGCACCCTTTTC-AAAGC
*
1626588 ACACAAGTT
1 CCACAAGTT
1626597 GATACAACCC
Statistics
Matches: 56, Mismatches: 7, Indels: 5
0.82 0.10 0.07
Matches are distributed among these distances:
27 23 0.41
28 13 0.23
29 20 0.36
ACGTcount: A:0.29, C:0.31, G:0.17, T:0.23
Consensus pattern (29 bp):
CCACAAGTTAGTGGCACCCTTTTCAAAGC
Done.