Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold31
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2401195
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 123915 characters in sequence are not A, C, G, or T
File 9 of 16
Found at i:1211130 original size:29 final size:27
Alignment explanation
Indices: 1211097--1211164 Score: 93
Period size: 29 Copynumber: 2.4 Consensus size: 27
1211087 CAGATTTTTC
1211097 TTTTTTTTTTTGTTTGTTTTGTT-TGTTT
1 TTTTTTTTTTTGTTT-TTTT-TTGTGTTT
1211125 TGTTTTTTTTTTGTTTTTTTTTGTGTTT
1 T-TTTTTTTTTTGTTTTTTTTTGTGTTT
*
1211153 TTTTCTTTTTTG
1 TTTTTTTTTTTG
1211165 AAAAAGAATG
Statistics
Matches: 37, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
27 12 0.32
28 11 0.30
29 14 0.38
ACGTcount: A:0.00, C:0.01, G:0.13, T:0.85
Consensus pattern (27 bp):
TTTTTTTTTTTGTTTTTTTTTGTGTTT
Found at i:1211133 original size:30 final size:28
Alignment explanation
Indices: 1211092--1211163 Score: 92
Period size: 28 Copynumber: 2.5 Consensus size: 28
1211082 TTAAGCAGAT
1211092 TTTTCTTTTTTTTTTTGTTTGTTTTGTT-TG
1 TTTT-TTTTTTTTTTTGTTT-TTTT-TTGTG
*
1211122 TTTTGTTTTTTTTTTGTTTTTTTTTGTG
1 TTTTTTTTTTTTTTTGTTTTTTTTTGTG
*
1211150 TTTTTTTCTTTTTT
1 TTTTTTTTTTTTTT
1211164 GAAAAAGAAT
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
27 2 0.05
28 18 0.47
29 14 0.37
30 4 0.11
ACGTcount: A:0.00, C:0.03, G:0.11, T:0.86
Consensus pattern (28 bp):
TTTTTTTTTTTTTTTGTTTTTTTTTGTG
Found at i:1211142 original size:9 final size:9
Alignment explanation
Indices: 1211091--1211163 Score: 67
Period size: 10 Copynumber: 7.7 Consensus size: 9
1211081 CTTAAGCAGA
1211091 TTTTTCTTT-
1 TTTTT-TTTG
1211100 TTTTTTTTG
1 TTTTTTTTG
*
1211109 TTTGTTTTG
1 TTTTTTTTG
*
1211118 TTTGTTTTGTT
1 TTT-TTTT-TG
1211129 TTTTTTTTG
1 TTTTTTTTG
1211138 TTTTTTTTTG
1 -TTTTTTTTG
*
1211148 TGTTTTTTTC
1 T-TTTTTTTG
1211158 TTTTTT
1 TTTTTT
1211164 GAAAAAGAAT
Statistics
Matches: 54, Mismatches: 5, Indels: 10
0.78 0.07 0.14
Matches are distributed among these distances:
8 3 0.06
9 23 0.43
10 24 0.44
11 4 0.07
ACGTcount: A:0.00, C:0.03, G:0.11, T:0.86
Consensus pattern (9 bp):
TTTTTTTTG
Found at i:1214838 original size:79 final size:79
Alignment explanation
Indices: 1214707--1214966 Score: 407
Period size: 79 Copynumber: 3.3 Consensus size: 79
1214697 TGGAGATAAC
*
1214707 AACGGGGCTGGAGTATCCCCGATTATGAAAAATCGGTATTTTAGAAATAAAATCGGGGTTGGAGT
1 AACGGGGTTGGAGTATCCCCGATTATGAAAAATCGGTATTTTAGAAATAAAATCGGGGTTGGAGT
1214772 ATCCCCTCGAAAAT
66 ATCCCCTCGAAAAT
* * ** *
1214786 AACGGGGTTGGAGTATCTCCGATTATGGAAAATTAGTATTTTGGAAATAAAATCGGGGTTGGAGT
1 AACGGGGTTGGAGTATCCCCGATTATGAAAAATCGGTATTTTAGAAATAAAATCGGGGTTGGAGT
1214851 ATCCCCTC-AGAAAT
66 ATCCCCTCGA-AAAT
*
1214865 AACGGGGTTGGAGTATCCCCGATTGTGAAAAATCGGTATTTTAGAAATAAAAATCGGGGTTGGAG
1 AACGGGGTTGGAGTATCCCCGATTATGAAAAATCGGTATTTTAGAAAT-AAAATCGGGGTTGGAG
1214930 TATCCCCTCGAAAA-
65 TATCCCCTCGAAAAT
* *
1214944 AACAGGATTGGAGTATCCCCGAT
1 AACGGGGTTGGAGTATCCCCGAT
1214967 GACATAACGG
Statistics
Matches: 164, Mismatches: 14, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
78 1 0.01
79 134 0.82
80 28 0.17
81 1 0.01
ACGTcount: A:0.32, C:0.15, G:0.26, T:0.26
Consensus pattern (79 bp):
AACGGGGTTGGAGTATCCCCGATTATGAAAAATCGGTATTTTAGAAATAAAATCGGGGTTGGAGT
ATCCCCTCGAAAAT
Found at i:1215082 original size:108 final size:107
Alignment explanation
Indices: 1214844--1215219 Score: 488
Period size: 108 Copynumber: 3.5 Consensus size: 107
1214834 AAAATCGGGG
* * * **
1214844 TTGGAGTATCCCCTCA-GAAATAACGGGGTTGGAGTATCCCCGATTGTG-AAAAATCGGTATTTT
1 TTGGAGTATCCCC-GATGAAATAACAGGGTTGGAGTATCCCCGATTATGAAAAAATCAATATTTT
* ** *
1214907 AGAAATAAAAATCGGGGTTGGAGTATCCCCTCGAAAAAACAGGA
65 AGATATAAAGCT-GGGGTTGGAGTATCCCCTCGAAAAAAAAGGA
* *
1214951 TTGGAGTATCCCCGATGACATAACGGGGTTGGAGTA-CCCTCGATTATGAAAAAATCAATATTTT
1 TTGGAGTATCCCCGATGAAATAACAGGGTTGGAGTATCCC-CGATTATGAAAAAATCAATATTTT
1215015 AGATATAAAGCTGGGGTTGGAGTATCCCCTCGAAAAAAATAGGA
65 AGATATAAAGCTGGGGTTGGAGTATCCCCTCGAAAAAAA-AGGA
* *
1215059 TTAGAGTATCCCCGATGAAATAACAGGGTTGGAGTACCCCCGATTATGAAAAAATCAATATTTTA
1 TTGGAGTATCCCCGATGAAATAACAGGGTTGGAGTATCCCCGATTATGAAAAAATCAATATTTTA
* ** * * *
1215124 GATATAAAGCCGCTGTTGGAGTATCCCTTCAGAAAAGAAGGGA
66 GATATAAAGCTGGGGTTGGAGTATCCCCTC-GAAAAAAAAGGA
* * *
1215167 TTGGAGTATCCCCGATGAAATAACAGGGTTAGAGTATCCCCAATTGTGAAAAA
1 TTGGAGTATCCCCGATGAAATAACAGGGTTGGAGTATCCCCGATTATGAAAAA
1215220 TTGATGTTTT
Statistics
Matches: 240, Mismatches: 23, Indels: 11
0.88 0.08 0.04
Matches are distributed among these distances:
106 4 0.02
107 65 0.27
108 161 0.67
109 10 0.04
ACGTcount: A:0.35, C:0.16, G:0.24, T:0.25
Consensus pattern (107 bp):
TTGGAGTATCCCCGATGAAATAACAGGGTTGGAGTATCCCCGATTATGAAAAAATCAATATTTTA
GATATAAAGCTGGGGTTGGAGTATCCCCTCGAAAAAAAAGGA
Found at i:1215093 original size:28 final size:30
Alignment explanation
Indices: 1215028--1215102 Score: 77
Period size: 28 Copynumber: 2.6 Consensus size: 30
1215018 TATAAAGCTG
*
1215028 GGGTTGGAGTATCCCC--TCGAAAAAAATA
1 GGGTTGGAGTATCCCCGATCGAAAAAAACA
* * *
1215056 GGATTAGAGTATCCCCGAT-G-AAATAACA
1 GGGTTGGAGTATCCCCGATCGAAAAAAACA
*
1215084 GGGTTGGAGTACCCCCGAT
1 GGGTTGGAGTATCCCCGAT
1215103 TATGAAAAAA
Statistics
Matches: 38, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
28 36 0.95
29 1 0.03
30 1 0.03
ACGTcount: A:0.32, C:0.20, G:0.27, T:0.21
Consensus pattern (30 bp):
GGGTTGGAGTATCCCCGATCGAAAAAAACA
Found at i:1215186 original size:28 final size:26
Alignment explanation
Indices: 1215138--1215208 Score: 65
Period size: 28 Copynumber: 2.6 Consensus size: 26
1215128 TAAAGCCGCT
1215138 GTTGGAGTATCCCTTCAGAAA-AGA-AGG
1 GTTGGAGTATCCC--CAGAAATA-ACAGG
1215165 GATTGGAGTATCCCCGATGAAATAACAGG
1 G-TTGGAGTATCCCC-A-GAAATAACAGG
*
1215194 GTTAGAGTATCCCCA
1 GTTGGAGTATCCCCA
1215209 ATTGTGAAAA
Statistics
Matches: 38, Mismatches: 1, Indels: 10
0.78 0.02 0.20
Matches are distributed among these distances:
26 1 0.03
27 3 0.08
28 29 0.76
29 5 0.13
ACGTcount: A:0.32, C:0.18, G:0.27, T:0.23
Consensus pattern (26 bp):
GTTGGAGTATCCCCAGAAATAACAGG
Found at i:1215251 original size:215 final size:215
Alignment explanation
Indices: 1214847--1215256 Score: 490
Period size: 215 Copynumber: 1.9 Consensus size: 215
1214837 ATCGGGGTTG
* * * **
1214847 GAGTATCCCCTCAGAAATAACGGGGTTGGAGTATCCCCGATTGTGAAAAATCGGTATTTTAGAAA
1 GAGTATCCCCTCAGAAATAACAGGGTTGGAGTACCCCCGATTATGAAAAATCAATATTTTAGAAA
* * * *
1214912 TAAAAATCGGGGTTGGAGTATCCCCTCGAAAAAACAGGATTGGAGTATCCCCGATGACATAACGG
66 TAAAAACCGCGGTTGGAGTATCCCCTCGAAAAAACAGGATTGGAGTATCCCCGATGAAATAACAG
* * * * * *
1214977 GGTTGGAGTACCCTCGATTATGAAAAAATCAATATTTTAGATATAAAGCTGGGGTTGGAGTATCC
131 GGTTAGAGTACCCTCAATTATGAAAAAATCAATATTTTAAAAATAAAGCTAGAGTTGGAGTATCC
1215042 CCTCGAAAAAAATAGGATTA
196 CCTCGAAAAAAATAGGATTA
*
1215062 GAGTATCCCC-GATGAAATAACAGGGTTGGAGTACCCCCGATTATGAAAAAATCAATATTTTAGA
1 GAGTATCCCCTCA-GAAATAACAGGGTTGGAGTACCCCCGATTATG-AAAAATCAATATTTTAGA
* * * * *
1215126 TAT-AAAGCCGCTGTTGGAGTATCCCTTCAGAAAAGAA-GGGATTGGAGTATCCCCGATGAAATA
64 AATAAAAACCGCGGTTGGAGTATCCCCTC-GAAAA-AACAGGATTGGAGTATCCCCGATGAAATA
* ** * *
1215189 ACAGGGTTAGAGTATCCC-CAATTGTG-AAAAATTGATGTTTTAAAAATGAAATC-AGAGTTGGA
127 ACAGGGTTAGAGTA-CCCTCAATTATGAAAAAATCAATATTTTAAAAAT-AAAGCTAGAGTTGGA
1215251 GTATCC
190 GTATCC
1215257 TCGATTGTAG
Statistics
Matches: 163, Mismatches: 26, Indels: 12
0.81 0.13 0.06
Matches are distributed among these distances:
214 1 0.01
215 88 0.54
216 69 0.42
217 5 0.03
ACGTcount: A:0.35, C:0.16, G:0.23, T:0.26
Consensus pattern (215 bp):
GAGTATCCCCTCAGAAATAACAGGGTTGGAGTACCCCCGATTATGAAAAATCAATATTTTAGAAA
TAAAAACCGCGGTTGGAGTATCCCCTCGAAAAAACAGGATTGGAGTATCCCCGATGAAATAACAG
GGTTAGAGTACCCTCAATTATGAAAAAATCAATATTTTAAAAATAAAGCTAGAGTTGGAGTATCC
CCTCGAAAAAAATAGGATTA
Found at i:1215337 original size:51 final size:52
Alignment explanation
Indices: 1215192--1215363 Score: 172
Period size: 51 Copynumber: 3.3 Consensus size: 52
1215182 TGAAATAACA
* * * * * * *
1215192 GGGTTAGAGTATCCCCAATTG-TGAAAAATTGATGTTTTAAAAATGAAATCA
1 GGGTTGGAGTATTCCCGATTGAAGAAAAATTGATGTTTTAGAAATGAAAACG
* * *
1215243 GAGTTGGAGTA-TCCTCGATTGTAG-AAAATTGATGTTTTAGAAATAAAAACG
1 GGGTTGGAGTATTCC-CGATTGAAGAAAAATTGATGTTTTAGAAATGAAAACG
* *
1215294 GGGTTGGAGTATTCCCGATT-AAGAAAAATTGATGTTTTGGAAATGGAAACCG
1 GGGTTGGAGTATTCCCGATTGAAGAAAAATTGATGTTTTAGAAAT-GAAAACG
* *
1215346 GGATTGGAGTATCCCCGA
1 GGGTTGGAGTATTCCCGA
1215364 GATGAAAAAT
Statistics
Matches: 100, Mismatches: 16, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
50 4 0.04
51 71 0.71
52 25 0.25
ACGTcount: A:0.35, C:0.10, G:0.25, T:0.30
Consensus pattern (52 bp):
GGGTTGGAGTATTCCCGATTGAAGAAAAATTGATGTTTTAGAAATGAAAACG
Found at i:1217626 original size:82 final size:82
Alignment explanation
Indices: 1217505--1217684 Score: 351
Period size: 82 Copynumber: 2.2 Consensus size: 82
1217495 ATTTGATCGT
1217505 AAAACATGTTTGAATTCCATTCCGACCCCAAAGATGAATCTTAGCATGATTTCTAATGATTCTGG
1 AAAACATGTTTGAATTCCATTCCGACCCCAAAGATGAATCTTAGCATGATTTCTAATGATTCTGG
1217570 ATGCAAAATGTGTGTTA
66 ATGCAAAATGTGTGTTA
1217587 AAAACATGTTTGAATTCCATTCCGACCCCAAAGATGAATCTTAGCATGATTTCTAATGATTCTGG
1 AAAACATGTTTGAATTCCATTCCGACCCCAAAGATGAATCTTAGCATGATTTCTAATGATTCTGG
1217652 ATGCAAAATGTGTGTTA
66 ATGCAAAATGTGTGTTA
1217669 AAAACATGTTTTGAAT
1 AAAACATG-TTTGAAT
1217685 GGACAATGGA
Statistics
Matches: 97, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
82 90 0.93
83 7 0.07
ACGTcount: A:0.34, C:0.16, G:0.17, T:0.33
Consensus pattern (82 bp):
AAAACATGTTTGAATTCCATTCCGACCCCAAAGATGAATCTTAGCATGATTTCTAATGATTCTGG
ATGCAAAATGTGTGTTA
Found at i:1217800 original size:13 final size:13
Alignment explanation
Indices: 1217782--1217811 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
1217772 GTAAACCGAG
1217782 AATGTATCGATAC
1 AATGTATCGATAC
*
1217795 AATGTATCGATAT
1 AATGTATCGATAC
1217808 AATG
1 AATG
1217812 AACAATATAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.40, C:0.10, G:0.17, T:0.33
Consensus pattern (13 bp):
AATGTATCGATAC
Found at i:1217837 original size:62 final size:63
Alignment explanation
Indices: 1217733--1217861 Score: 165
Period size: 62 Copynumber: 2.1 Consensus size: 63
1217723 AAAATGCCTG
* * * *
1217733 AATGTATCGATACATTGCAAAATGTATCGATACATCTGGGT-AAAC-CGAGAATGTATCGATAC
1 AATGTATCGATACAATGCAAAATATATCGATACATATAGGTAAAACTC-AGAATGTATCGATAC
* *
1217795 AATGTATCGATATAATG-AACAATATATCGATACATATAGGTAAAACTCAGAATGTATCGATAT
1 AATGTATCGATACAATGCAA-AATATATCGATACATATAGGTAAAACTCAGAATGTATCGATAC
1217858 AATG
1 AATG
1217862 AATAATGTAT
Statistics
Matches: 58, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
61 2 0.03
62 33 0.57
63 22 0.38
64 1 0.02
ACGTcount: A:0.41, C:0.13, G:0.17, T:0.29
Consensus pattern (63 bp):
AATGTATCGATACAATGCAAAATATATCGATACATATAGGTAAAACTCAGAATGTATCGATAC
Found at i:1219450 original size:20 final size:21
Alignment explanation
Indices: 1219416--1219461 Score: 58
Period size: 20 Copynumber: 2.2 Consensus size: 21
1219406 TTATGCATAA
* *
1219416 TATTTTTTCACTTTT-ATTTT
1 TATTTTTTAACTTTTGATTTC
*
1219436 TATTTTTTAATTTTTGATTTC
1 TATTTTTTAACTTTTGATTTC
1219457 TATTT
1 TATTT
1219462 ATTATTATAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
20 13 0.59
21 9 0.41
ACGTcount: A:0.17, C:0.07, G:0.02, T:0.74
Consensus pattern (21 bp):
TATTTTTTAACTTTTGATTTC
Found at i:1220038 original size:85 final size:85
Alignment explanation
Indices: 1219943--1221098 Score: 1103
Period size: 85 Copynumber: 13.6 Consensus size: 85
1219933 TAGATAAGGC
* * * ** *
1219943 AGTCTTTAGGGTCAAAGCCGACAGGTAGACTTAGGGA-AGGAAAGTCTCCAGGGTCAAAGTTGAT
1 AGTCTCTAGGGTCAAAGCCGACAGGCAGACTAAGGGATAGGAAAGTCTCCAGGGTCAAAGCCGAC
*
1220007 AGGCAGACTGAAGGATAGAAA
66 AGGCAGACT-AAGGATAGGAA
* * ** * *
1220028 AGTCTCTAGGGTCAAAGCCGACAGGCAGACT-ATGGAAACAAAAATCTCTAGGGTCAAAGCCGAC
1 AGTCTCTAGGGTCAAAGCCGACAGGCAGACTAAGGGATAGGAAAGTCTCCAGGGTCAAAGCCGAC
*
1220092 AGACAGACTAA-GAGTAAGG-A
66 AGGCAGACTAAGGA-T-AGGAA
* * * * ** **
1220112 AGTCTCCAGGGTCAAAGCCAACAAGTAGACTAAGGGATAGGAAAGTCTTAAGGGTCAAAGATGAC
1 AGTCTCTAGGGTCAAAGCCGACAGGCAGACTAAGGGATAGGAAAGTCTCCAGGGTCAAAGCCGAC
* * *
1220177 AAGTAGACTGAGGGATAGGAA
66 AGGCAGACT-AAGGATAGGAA
* * * * * *
1220198 AGTCTCCATGGTCAAAACTGACAGGCAGACTAAGGGATAAGAAAGTCTCTAGGGTCAAAGCCGAC
1 AGTCTCTAGGGTCAAAGCCGACAGGCAGACTAAGGGATAGGAAAGTCTCCAGGGTCAAAGCCGAC
* * *
1220263 AAGCAGACCAAGGGATAAGAA
66 AGGCAGACTAA-GGATAGGAA
* * * * * *
1220284 AGTCTCTAGGGTCAAAGCCGACAAGCAAACTAAGGGATAAGAAAGTTTCCAGGGTCAAAGTCGAT
1 AGTCTCTAGGGTCAAAGCCGACAGGCAGACTAAGGGATAGGAAAGTCTCCAGGGTCAAAGCCGAC
* * *
1220349 AGGTAGACTCAGGAAAGGAA
66 AGGCAGACTAAGGATAGGAA
* ** * * * *
1220369 AGTCTCCAGGGTCAAAGTTGACAAGTAGACTAAGGGATAGGAAAGTCTCTAGGGTCAAAGCCGAT
1 AGTCTCTAGGGTCAAAGCCGACAGGCAGACTAAGGGATAGGAAAGTCTCCAGGGTCAAAGCCGAC
*
1220434 AGGCAGACTAAGGGATAGAAA
66 AGGCAGACTAA-GGATAGGAA
* * * ** * * * *
1220455 AGTCTCCATGGTTAAAATCGATAGGAAGACTAA-GAAAAGGAAAGTCTCCA-GGTCAAAGCCGAC
1 AGTCTCTAGGGTCAAAGCCGACAGGCAGACTAAGGGATAGGAAAGTCTCCAGGGTCAAAGCCGAC
** *
1220518 AGATAGATTAAGGGATAGGAA
66 AGGCAGACTAA-GGATAGGAA
* ** * * * *
1220539 AGTCTTTAGGGTCAAAGAGGATAGGTAGACTAAGGGA-AGAAAAGTCTCCAAGGTCAAAGCCGAC
1 AGTCTCTAGGGTCAAAGCCGACAGGCAGACTAAGGGATAGGAAAGTCTCCAGGGTCAAAGCCGAC
*
1220603 AGACAGACTAAAGGATAGGAA
66 AGGCAGACT-AAGGATAGGAA
* * * * * *
1220624 AGTCTCTAGGGTCAAAGTCGACAAGCATACTAAGGGATAAGAAAGTCTCTAGGTTCAAAGCCGAC
1 AGTCTCTAGGGTCAAAGCCGACAGGCAGACTAAGGGATAGGAAAGTCTCCAGGGTCAAAGCCGAC
* *
1220689 AAGTAGACTAAGGGA-AGGAA
66 AGGCAGACTAA-GGATAGGAA
* * * * *
1220709 AGTCTCCAAGGTCAAAGCAGACAGGCAGATTGAGGGATAGGAAAGTCTCCAGGGTCAAAGCCGAC
1 AGTCTCTAGGGTCAAAGCCGACAGGCAGACTAAGGGATAGGAAAGTCTCCAGGGTCAAAGCCGAC
* * *
1220774 ATGCATACTCAGGGATAGGAA
66 AGGCAGACT-AAGGATAGGAA
* * * * * *
1220795 AGTCTTTAGGGTCAAAGCCGACAGGAAAACTAAGGGATAGGAAAGTCTCCAGTGCCAAAGCTGAC
1 AGTCTCTAGGGTCAAAGCCGACAGGCAGACTAAGGGATAGGAAAGTCTCCAGGGTCAAAGCCGAC
* * *
1220860 TGGCAAACTAAGGGA-AGAAA
66 AGGCAGACTAA-GGATAGGAA
* *
1220880 AGTCT-TCAGGGTCAAAGCCGACAGGCATACTAAGGGATAGGAAAGTCTCTAGGGTCAAAGCCGA
1 AGTCTCT-AGGGTCAAAGCCGACAGGCAGACTAAGGGATAGGAAAGTCTCCAGGGTCAAAGCCGA
*
1220944 CAGGCAGGCTAAGGGAT-GGAA
65 CAGGCAGACTAA-GGATAGGAA
* * * *
1220965 AGTCTCTAGGGTCAAAGTCGATAGGCAGACTAAGGGATATGAAAGTCTCTAGGGTCAAAGCCGAC
1 AGTCTCTAGGGTCAAAGCCGACAGGCAGACTAAGGGATAGGAAAGTCTCCAGGGTCAAAGCCGAC
*
1221030 AGGCAGATTAAGAGATAGGAA
66 AGGCAGACTAAG-GATAGGAA
* * * * * * *
1221051 AGTTTCCAAGGTCAAAGCTGATAGGCAGATTAAGGGAT-GAAAAGTCTC
1 AGTCTCTAGGGTCAAAGCCGACAGGCAGACTAAGGGATAGGAAAGTCTC
1221099 AAGAAGTTTA
Statistics
Matches: 879, Mismatches: 170, Indels: 44
0.80 0.16 0.04
Matches are distributed among these distances:
83 2 0.00
84 103 0.12
85 466 0.53
86 306 0.35
87 2 0.00
ACGTcount: A:0.38, C:0.17, G:0.29, T:0.17
Consensus pattern (85 bp):
AGTCTCTAGGGTCAAAGCCGACAGGCAGACTAAGGGATAGGAAAGTCTCCAGGGTCAAAGCCGAC
AGGCAGACTAAGGATAGGAA
Found at i:1220041 original size:43 final size:43
Alignment explanation
Indices: 1219943--1221098 Score: 1163
Period size: 43 Copynumber: 27.1 Consensus size: 43
1219933 TAGATAAGGC
* * *
1219943 AGTCTTTAGGGTCAAAGCCGACAGGTAGACTTAGGGA-AGGAA
1 AGTCTCTAGGGTCAAAGCCGACAGGCAGACTAAGGGATAGGAA
* ** * *
1219985 AGTCTCCAGGGTCAAAGTTGATAGGCAGACTGAA-GGATAGAAA
1 AGTCTCTAGGGTCAAAGCCGACAGGCAGACT-AAGGGATAGGAA
* * **
1220028 AGTCTCTAGGGTCAAAGCCGACAGGCAGACT-ATGGAAACAAA
1 AGTCTCTAGGGTCAAAGCCGACAGGCAGACTAAGGGATAGGAA
* * *
1220070 AATCTCTAGGGTCAAAGCCGACAGACAGACTAAGAG-TAAGG-A
1 AGTCTCTAGGGTCAAAGCCGACAGGCAGACTAAGGGAT-AGGAA
* * * *
1220112 AGTCTCCAGGGTCAAAGCCAACAAGTAGACTAAGGGATAGGAA
1 AGTCTCTAGGGTCAAAGCCGACAGGCAGACTAAGGGATAGGAA
** * * *
1220155 AGTCT-TAAGGGTCAAAGATGACAAGTAGACTGAGGGATAGGAA
1 AGTCTCT-AGGGTCAAAGCCGACAGGCAGACTAAGGGATAGGAA
* * * * *
1220198 AGTCTCCATGGTCAAAACTGACAGGCAGACTAAGGGATAAGAA
1 AGTCTCTAGGGTCAAAGCCGACAGGCAGACTAAGGGATAGGAA
* * *
1220241 AGTCTCTAGGGTCAAAGCCGACAAGCAGACCAAGGGATAAGAA
1 AGTCTCTAGGGTCAAAGCCGACAGGCAGACTAAGGGATAGGAA
* * *
1220284 AGTCTCTAGGGTCAAAGCCGACAAGCAAACTAAGGGATAAGAA
1 AGTCTCTAGGGTCAAAGCCGACAGGCAGACTAAGGGATAGGAA
* * * * * * *
1220327 AGTTTCCAGGGTCAAAGTCGATAGGTAGACTCA-GGAAAGGAA
1 AGTCTCTAGGGTCAAAGCCGACAGGCAGACTAAGGGATAGGAA
* ** * *
1220369 AGTCTCCAGGGTCAAAGTTGACAAGTAGACTAAGGGATAGGAA
1 AGTCTCTAGGGTCAAAGCCGACAGGCAGACTAAGGGATAGGAA
* *
1220412 AGTCTCTAGGGTCAAAGCCGATAGGCAGACTAAGGGATAGAAA
1 AGTCTCTAGGGTCAAAGCCGACAGGCAGACTAAGGGATAGGAA
* * * ** * * * *
1220455 AGTCTCCATGGTTAAAATCGATAGGAAGACTAA-GAAAAGGAA
1 AGTCTCTAGGGTCAAAGCCGACAGGCAGACTAAGGGATAGGAA
* ** *
1220497 AGTCTCCA-GGTCAAAGCCGACAGATAGATTAAGGGATAGGAA
1 AGTCTCTAGGGTCAAAGCCGACAGGCAGACTAAGGGATAGGAA
* ** * * *
1220539 AGTCTTTAGGGTCAAAGAGGATAGGTAGACTAAGGGA-AGAAA
1 AGTCTCTAGGGTCAAAGCCGACAGGCAGACTAAGGGATAGGAA
* * * *
1220581 AGTCTCCAAGGTCAAAGCCGACAGACAGACTAAAGGATAGGAA
1 AGTCTCTAGGGTCAAAGCCGACAGGCAGACTAAGGGATAGGAA
* * * *
1220624 AGTCTCTAGGGTCAAAGTCGACAAGCATACTAAGGGATAAGAA
1 AGTCTCTAGGGTCAAAGCCGACAGGCAGACTAAGGGATAGGAA
* * *
1220667 AGTCTCTAGGTTCAAAGCCGACAAGTAGACTAAGGGA-AGGAA
1 AGTCTCTAGGGTCAAAGCCGACAGGCAGACTAAGGGATAGGAA
* * * * *
1220709 AGTCTCCAAGGTCAAAGCAGACAGGCAGATTGAGGGATAGGAA
1 AGTCTCTAGGGTCAAAGCCGACAGGCAGACTAAGGGATAGGAA
* * * *
1220752 AGTCTCCAGGGTCAAAGCCGACATGCATACTCAGGGATAGGAA
1 AGTCTCTAGGGTCAAAGCCGACAGGCAGACTAAGGGATAGGAA
* * *
1220795 AGTCTTTAGGGTCAAAGCCGACAGGAAAACTAAGGGATAGGAA
1 AGTCTCTAGGGTCAAAGCCGACAGGCAGACTAAGGGATAGGAA
* * * * * * *
1220838 AGTCTCCAGTGCCAAAGCTGACTGGCAAACTAAGGGA-AGAAA
1 AGTCTCTAGGGTCAAAGCCGACAGGCAGACTAAGGGATAGGAA
*
1220880 AGTCT-TCAGGGTCAAAGCCGACAGGCATACTAAGGGATAGGAA
1 AGTCTCT-AGGGTCAAAGCCGACAGGCAGACTAAGGGATAGGAA
*
1220923 AGTCTCTAGGGTCAAAGCCGACAGGCAGGCTAAGGGAT-GGAA
1 AGTCTCTAGGGTCAAAGCCGACAGGCAGACTAAGGGATAGGAA
* * *
1220965 AGTCTCTAGGGTCAAAGTCGATAGGCAGACTAAGGGATATGAA
1 AGTCTCTAGGGTCAAAGCCGACAGGCAGACTAAGGGATAGGAA
* *
1221008 AGTCTCTAGGGTCAAAGCCGACAGGCAGATTAAGAGATAGGAA
1 AGTCTCTAGGGTCAAAGCCGACAGGCAGACTAAGGGATAGGAA
* * * * * * *
1221051 AGTTTCCAAGGTCAAAGCTGATAGGCAGATTAAGGGAT-GAAA
1 AGTCTCTAGGGTCAAAGCCGACAGGCAGACTAAGGGATAGGAA
1221093 AGTCTC
1 AGTCTC
1221099 AAGAAGTTTA
Statistics
Matches: 921, Mismatches: 175, Indels: 36
0.81 0.15 0.03
Matches are distributed among these distances:
41 18 0.02
42 305 0.33
43 597 0.65
44 1 0.00
ACGTcount: A:0.38, C:0.17, G:0.29, T:0.17
Consensus pattern (43 bp):
AGTCTCTAGGGTCAAAGCCGACAGGCAGACTAAGGGATAGGAA
Found at i:1220417 original size:128 final size:128
Alignment explanation
Indices: 1219950--1221098 Score: 1156
Period size: 128 Copynumber: 9.0 Consensus size: 128
1219940 GGCAGTCTTT
* * * ** * *
1219950 AGGGTCAAAGCCGACAGGTAGACTTAGGGAAGGAAAGTCTCCAGGGTCAAAGTTGATAGGCAGAC
1 AGGGTCAAAGCCGACAGGCAGACTAAGGAAAGGAAAGTCTCCAGGGTCAAAGCCGACAAGCAGAC
* * * * *
1220015 TGAA-GGATAGAAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACT-ATGGA-AACAAAAATCTCT
66 T-AAGGGATAGGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTAAGGGATAA-GAAAGTCTCC
* * * *
1220077 AGGGTCAAAGCCGACAGACAGACTAAGAGTAAGG-AAGTCTCCAGGGTCAAAGCCAACAAGTAGA
1 AGGGTCAAAGCCGACAGGCAGACTAAG-GAAAGGAAAGTCTCCAGGGTCAAAGCCGACAAGCAGA
** * * * *
1220141 CTAAGGGATAGGAAAGTCT-TAAGGGTCAAAGATGACAAGTAGACTGAGGGATAGGAAAGTCTCC
65 CTAAGGGATAGGAAAGTCTCT-AGGGTCAAAGCCGACAGGCAGACTAAGGGATAAGAAAGTCTCC
* * * *
1220205 ATGGTCAAAACTGACAGGCAGACTAAGGGATAA-GAAAGTCTCTAGGGTCAAAGCCGACAAGCAG
1 AGGGTCAAAGCCGACAGGCAGACTAA-GGA-AAGGAAAGTCTCCAGGGTCAAAGCCGACAAGCAG
* * * * *
1220269 ACCAAGGGATAAGAAAGTCTCTAGGGTCAAAGCCGACAAGCAAACTAAGGGATAAGAAAGTTTCC
64 ACTAAGGGATAGGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTAAGGGATAAGAAAGTCTCC
* * * * ** *
1220334 AGGGTCAAAGTCGATAGGTAGACTCAGGAAAGGAAAGTCTCCAGGGTCAAAGTTGACAAGTAGAC
1 AGGGTCAAAGCCGACAGGCAGACTAAGGAAAGGAAAGTCTCCAGGGTCAAAGCCGACAAGCAGAC
*
1220399 TAAGGGATAGGAAAGTCTCTAGGGTCAAAGCCGATAGGCAGACTAAGGGAT-AGAAAAGTCTCC
66 TAAGGGATAGGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTAAGGGATAAG-AAAGTCTCC
* * ** * * * *
1220462 ATGGTTAAAATCGATAGGAAGACTAAGAAAAGGAAAGTCTCCA-GGTCAAAGCCGAC-AGATAGA
1 AGGGTCAAAGCCGACAGGCAGACTAAGGAAAGGAAAGTCTCCAGGGTCAAAGCCGACAAG-CAGA
* * ** * *
1220525 TTAAGGGATAGGAAAGTCTTTAGGGTCAAAGAGGATAGGTAGACTAAGGG--AAGAAAAGTCTCC
65 CTAAGGGATAGGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTAAGGGATAAG-AAAGTCTCC
* * * * * *
1220588 AAGGTCAAAGCCGACAGACAGACTAAAGGATAGGAAAGTCTCTAGGGTCAAAGTCGACAAGCATA
1 AGGGTCAAAGCCGACAGGCAGACT-AAGGAAAGGAAAGTCTCCAGGGTCAAAGCCGACAAGCAGA
* * * * *
1220653 CTAAGGGATAAGAAAGTCTCTAGGTTCAAAGCCGACAAGTAGACTAAGGGA-AGGAAAGTCTCC
65 CTAAGGGATAGGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTAAGGGATAAGAAAGTCTCC
* * * * * * *
1220716 AAGGTCAAAGCAGACAGGCAGATTGAGGGATAGGAAAGTCTCCAGGGTCAAAGCCGACATGCATA
1 AGGGTCAAAGCCGACAGGCAGACT-AAGGAAAGGAAAGTCTCCAGGGTCAAAGCCGACAAGCAGA
* * * * *
1220781 CTCAGGGATAGGAAAGTCTTTAGGGTCAAAGCCGACAGGAAAACTAAGGGATAGGAAAGTCTCC
65 CTAAGGGATAGGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTAAGGGATAAGAAAGTCTCC
* * * * * * * * * *
1220845 AGTGCCAAAGCTGACTGGCAAACTAAGGGAAGAAAAGTCTTCAGGGTCAAAGCCGACAGGCATAC
1 AGGGTCAAAGCCGACAGGCAGACTAAGGAAAGGAAAGTCTCCAGGGTCAAAGCCGACAAGCAGAC
* * *
1220910 TAAGGGATAGGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGGCTAAGGGAT-GGAAAGTCTCT
66 TAAGGGATAGGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTAAGGGATAAGAAAGTCTCC
* * * * * *
1220972 AGGGTCAAAGTCGATAGGCAGACTAAGGGATATGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGA
1 AGGGTCAAAGCCGACAGGCAGACTAA-GGAAAGGAAAGTCTCCAGGGTCAAAGCCGACAAGCAGA
* * * * * * * * *
1221037 TTAAGAGATAGGAAAGTTTCCAAGGTCAAAGCTGATAGGCAGATTAAGGGATGA-AAAGTCTC
65 CTAAGGGATAGGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTAAGGGATAAGAAAGTCTC
1221099 AAGAAGTTTA
Statistics
Matches: 855, Mismatches: 147, Indels: 39
0.82 0.14 0.04
Matches are distributed among these distances:
126 34 0.04
127 192 0.22
128 492 0.58
129 136 0.16
130 1 0.00
ACGTcount: A:0.38, C:0.17, G:0.29, T:0.16
Consensus pattern (128 bp):
AGGGTCAAAGCCGACAGGCAGACTAAGGAAAGGAAAGTCTCCAGGGTCAAAGCCGACAAGCAGAC
TAAGGGATAGGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTAAGGGATAAGAAAGTCTCC
Found at i:1227252 original size:10 final size:11
Alignment explanation
Indices: 1227230--1227258 Score: 51
Period size: 10 Copynumber: 2.7 Consensus size: 11
1227220 GATGTTTTTA
1227230 TGAAAAATGTT
1 TGAAAAATGTT
1227241 TGAAAAAT-TT
1 TGAAAAATGTT
1227251 TGAAAAAT
1 TGAAAAAT
1227259 CATCTAGTGG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 10 0.56
11 8 0.44
ACGTcount: A:0.52, C:0.00, G:0.14, T:0.34
Consensus pattern (11 bp):
TGAAAAATGTT
Found at i:1228914 original size:20 final size:20
Alignment explanation
Indices: 1228889--1228985 Score: 88
Period size: 20 Copynumber: 4.7 Consensus size: 20
1228879 TTTTAACTAG
1228889 ATGTATCGATACATTGAACA
1 ATGTATCGATACATTGAACA
*
1228909 ATGTATTGATACATCTGGGTAA-A
1 ATGTATCGATACAT-T--G-AACA
* * *
1228932 ATGTATCGATACATTCATCC
1 ATGTATCGATACATTGAACA
* *
1228952 ATGTATCGATACATCGAAAA
1 ATGTATCGATACATTGAACA
*
1228972 ATGTATCAATACAT
1 ATGTATCGATACAT
1228986 CTGGGTAAAA
Statistics
Matches: 61, Mismatches: 11, Indels: 10
0.74 0.13 0.12
Matches are distributed among these distances:
19 1 0.02
20 41 0.67
21 1 0.02
22 1 0.02
23 15 0.25
24 2 0.03
ACGTcount: A:0.38, C:0.15, G:0.14, T:0.32
Consensus pattern (20 bp):
ATGTATCGATACATTGAACA
Found at i:1230012 original size:29 final size:29
Alignment explanation
Indices: 1229919--1230505 Score: 617
Period size: 29 Copynumber: 20.2 Consensus size: 29
1229909 CAATAACTTG
* *
1229919 TGTGGGCTTTGAAAAGAATTGCCACCGACT
1 TGTGGGCTTTGAAAAGGA-TGCCACTGACT
*
1229949 TGTGTCGGCTTTG-AAAGGAGTTACCACT-AGCT
1 TGTG--GGCTTTGAAAAGGA--TGCCACTGA-CT
*
1229981 TGTGGGCTTTGAAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAAGGATGCCACTGACT
* * *
1230010 TGTAGGCTTTG-AAAGGGTGCCACTAACT
1 TGTGGGCTTTGAAAAGGATGCCACTGACT
* * * *
1230038 TGTGGGCTTTG-GAAGGGTGCCACCGATT
1 TGTGGGCTTTGAAAAGGATGCCACTGACT
* *
1230066 TACGT-GGCTTTAAAAAGAGTTGCCACAT-ACT
1 T--GTGGGCTTTGAAAAG-GATGCCAC-TGACT
* * * *
1230097 TGTGTGGACTTTGAAAAGAGTTACTACTGGCT
1 TGTG-GG-CTTTGAAAAG-GATGCCACTGACT
1230129 TGTGGGCTTTGAAAAGGATGCCACTGACT
1 TGTGGGCTTTGAAAAGGATGCCACTGACT
*
1230158 TGTGGGCTTTG-AAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAAGGATGCCACTGACT
* *
1230186 TGTGGGCTTTG-AAAGGATACCACTAACT
1 TGTGGGCTTTGAAAAGGATGCCACTGACT
1230214 TGTGGGCTTTG-AAAGGATGCCACTGACT
1 TGTGGGCTTTGAAAAGGATGCCACTGACT
*
1230242 TGTGGGCTTTGAGAA-GATGCCACTGACT
1 TGTGGGCTTTGAAAAGGATGCCACTGACT
1230270 TGTGGGCTTT-AAGAAGGATGCCACTGACT
1 TGTGGGCTTTGAA-AAGGATGCCACTGACT
* * *
1230299 TATGGGCTTTGAGAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAAGGATGCCACTGACT
*
1230328 TGTGGGCTTTGAGAAGGATGCCACTGACT
1 TGTGGGCTTTGAAAAGGATGCCACTGACT
* *
1230357 TGTGGGCTTTGAGAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAAGGATGCCACTGACT
** *
1230386 TGTGGGCTTTGAGGAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAAGGATGCCACTGACT
* * *
1230415 TGTGAGCTTTGAAAAGGGTGCCATTGACT
1 TGTGGGCTTTGAAAAGGATGCCACTGACT
* *
1230444 TGTGGG-TGTTG-AAAGAATGCCACTAACT
1 TGTGGGCT-TTGAAAAGGATGCCACTGACT
*
1230472 TGTGGGCTTTGAAAA-GATGCCATTGACT
1 TGTGGGCTTTGAAAAGGATGCCACTGACT
1230500 TGTGGG
1 TGTGGG
1230506 AGTTGAAGAG
Statistics
Matches: 481, Mismatches: 54, Indels: 46
0.83 0.09 0.08
Matches are distributed among these distances:
27 1 0.00
28 182 0.38
29 203 0.42
30 28 0.06
31 26 0.05
32 41 0.09
ACGTcount: A:0.23, C:0.17, G:0.31, T:0.29
Consensus pattern (29 bp):
TGTGGGCTTTGAAAAGGATGCCACTGACT
Found at i:1234214 original size:20 final size:20
Alignment explanation
Indices: 1234188--1234243 Score: 85
Period size: 20 Copynumber: 2.8 Consensus size: 20
1234178 AAAAAGATAG
*
1234188 AATGTATCGATACATTCATA
1 AATGTATCGATACATTCAAA
* *
1234208 CATGTATCGATACATTGAAA
1 AATGTATCGATACATTCAAA
1234228 AATGTATCGATACATT
1 AATGTATCGATACATT
1234244 TGGGTGCTTT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.39, C:0.14, G:0.12, T:0.34
Consensus pattern (20 bp):
AATGTATCGATACATTCAAA
Found at i:1235148 original size:28 final size:28
Alignment explanation
Indices: 1235090--1235961 Score: 903
Period size: 28 Copynumber: 30.5 Consensus size: 28
1235080 CTTGTGTGGG
*
1235090 TTGTGGCCTTTGAAAAGAGTGCCACTGAC
1 TTGTGGGCTTTGAAAAG-GTGCCACTGAC
1235119 TTGTGGGCTTTGAAAAGGTGCCACTGAC
1 TTGTGGGCTTTGAAAAGGTGCCACTGAC
* *
1235147 TTGTGGGATTT-AAAAGGGTGCCACTGAT
1 TTGTGGGCTTTGAAAA-GGTGCCACTGAC
* **
1235175 TTGTGGGCTTTAAAAAGAGTGCCACCAAC
1 TTGTGGGCTTTGAAAAG-GTGCCACTGAC
* * *
1235204 TTATGGGCTTTTAAAGGGTGCCACTGAC
1 TTGTGGGCTTTGAAAAGGTGCCACTGAC
*
1235232 TTGTGGGCTTTGAAAGGGTGCCACTGAC
1 TTGTGGGCTTTGAAAAGGTGCCACTGAC
* *
1235260 TTATGGGCTTTG-AAAGGATGCAACTGAC
1 TTGTGGGCTTTGAAAAGG-TGCCACTGAC
* * *
1235288 TTATAGGCTTTGAAAAGAGTTGCCACTAAC
1 TTGTGGGCTTTGAAAAG-G-TGCCACTGAC
*
1235318 TCGTGTGGGCTTTGAAAAGAGTGCCATTGAC
1 T--TGTGGGCTTTGAAAAG-GTGCCACTGAC
**
1235349 TTGTGGGCTTTGAAAATATGCCACTGAC
1 TTGTGGGCTTTGAAAAGGTGCCACTGAC
* * *
1235377 TTATGGGCTTTGAAAAGATGCCACTAAC
1 TTGTGGGCTTTGAAAAGGTGCCACTGAC
* *
1235405 TTGTGGGCATTGAAAAGGGTTACCACT-AGC
1 TTGTGGGCTTTGAAAA-GG-TGCCACTGA-C
*
1235435 TTGTGGGCTTTGAAATGGTGCCACTGAC
1 TTGTGGGCTTTGAAAAGGTGCCACTGAC
*
1235463 TTGTGGGCTTTGAAAGGGTGCCACTGAC
1 TTGTGGGCTTTGAAAAGGTGCCACTGAC
* *
1235491 TTGTGAGCTTTG-AAAGGATGACACTGAC
1 TTGTGGGCTTTGAAAAGG-TGCCACTGAC
* *
1235519 TTTTAGGCTTTGAAAAGAGTGCCACTGAC
1 TTGTGGGCTTTGAAAAG-GTGCCACTGAC
*
1235548 TTGTGGGCTTTGAAAGGGTGCCACTGAC
1 TTGTGGGCTTTGAAAAGGTGCCACTGAC
* * * *
1235576 TTATAGGCTTT-AAAAGGGTACCATTGAC
1 TTGTGGGCTTTGAAAA-GGTGCCACTGAC
*
1235604 TTGTGGGCTTTGAGAAGGATGCCACTGAC
1 TTGTGGGCTTTGAAAAGG-TGCCACTGAC
* *
1235633 TTGTGGGTTTTGAGAAGGGTGCCACTGAC
1 TTGTGGGCTTTGA-AAAGGTGCCACTGAC
* * * * *
1235662 TTATGGGGTTTGAAAAGAGTTCCATTGCC
1 TTGTGGGCTTTGAAAAG-GTGCCACTGAC
* * *
1235691 TTGTGGGCTATGAAAGGGTGCCACTAAC
1 TTGTGGGCTTTGAAAAGGTGCCACTGAC
* * * *
1235719 TTATAGGCTTTGAAAGGGTGCCACTAAC
1 TTGTGGGCTTTGAAAAGGTGCCACTGAC
* *
1235747 TTGTGGGCTTTAAAAAGATGCCACTGAC
1 TTGTGGGCTTTGAAAAGGTGCCACTGAC
* * *
1235775 TTGTGGGCTTTTGAAAAGAGTTACCACAGGC
1 TTGTGGGC-TTTGAAAAG-G-TGCCACTGAC
*
1235806 TTGTGGGCTTTGAAAAGAGTGCCACTAAC
1 TTGTGGGCTTTGAAAAG-GTGCCACTGAC
* *
1235835 TTGTGGGCTTTGAAAGGGTGCCACTAAC
1 TTGTGGGCTTTGAAAAGGTGCCACTGAC
* * *
1235863 TTGTGGGCTTTGAAAGGGTACCACTAAC
1 TTGTGGGCTTTGAAAAGGTGCCACTGAC
* *
1235891 TTATGGGCTTTG-AAAGGATGCCACTAAC
1 TTGTGGGCTTTGAAAAGG-TGCCACTGAC
* *
1235919 TTGT-GGCTTTGAAAAGAGTGTCATTGAC
1 TTGTGGGCTTTGAAAAG-GTGCCACTGAC
1235947 TTGTGGGCTTTGAAA
1 TTGTGGGCTTTGAAA
1235962 GGATTCCATT
Statistics
Matches: 713, Mismatches: 103, Indels: 54
0.82 0.12 0.06
Matches are distributed among these distances:
27 26 0.04
28 402 0.56
29 199 0.28
30 46 0.06
31 24 0.03
32 16 0.02
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.30
Consensus pattern (28 bp):
TTGTGGGCTTTGAAAAGGTGCCACTGAC
Found at i:1235233 original size:85 final size:85
Alignment explanation
Indices: 1235090--1235980 Score: 936
Period size: 85 Copynumber: 10.4 Consensus size: 85
1235080 CTTGTGTGGG
* * * * *
1235090 TTGTGGCCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAAGGTGCCACTGACTTGTGGGA
1 TTGTGGGCTTTGAAAAGAGTGCCACTGACTTATGGGCTTTGAAAGGGTGCCACTAACTTGTGGGC
*
1235155 TTTAAAAGGGTGCCACTGAT
66 TTTAAAAGGGTGCCACTGAC
* ** * *
1235175 TTGTGGGCTTTAAAAAGAGTGCCACCAACTTATGGGCTTTTAAAGGGTGCCACTGACTTGTGGGC
1 TTGTGGGCTTTGAAAAGAGTGCCACTGACTTATGGGCTTTGAAAGGGTGCCACTAACTTGTGGGC
*
1235240 TTTGAAAGGGTGCCACTGAC
66 TTTAAAAGGGTGCCACTGAC
* * * * *
1235260 TTATGGGCTTTGAAAGGA-TGCAACTGACTTATAGGCTTTGAAAAGAGTTGCCACTAACTCGTGT
1 TTGTGGGCTTTGAAAAGAGTGCCACTGACTTATGGGCTTTG-AAAG-GGTGCCACTAACT--TGT
* *
1235324 GGGCTTTGAAAAGAGTGCCATTGAC
62 GGGCTTT-AAAAGGGTGCCACTGAC
* * *
1235349 TTGTGGGCTTTGAAAATA-TGCCACTGACTTATGGGCTTTGAAAAGATGCCACTAACTTGTGGGC
1 TTGTGGGCTTTGAAAAGAGTGCCACTGACTTATGGGCTTTGAAAGGGTGCCACTAACTTGTGGGC
* *
1235413 ATTGAAAAGGGTTACCACT-AGC
66 -TTTAAAAGGG-TGCCACTGA-C
* * * *
1235435 TTGTGGGCTTTGAAATG-GTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGAGC
1 TTGTGGGCTTTGAAAAGAGTGCCACTGACTTATGGGCTTTGAAAGGGTGCCACTAACTTGTGGGC
* * *
1235499 TTTGAAAGGATGACACTGAC
66 TTTAAAAGGGTGCCACTGAC
* * * * * *
1235519 TTTTAGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACTTATAGGC
1 TTGTGGGCTTTGAAAAGAGTGCCACTGACTTATGGGCTTTGAAAGGGTGCCACTAACTTGTGGGC
* *
1235584 TTTAAAAGGGTACCATTGAC
66 TTTAAAAGGGTGCCACTGAC
* * * * *
1235604 TTGTGGGCTTTGAGAAG-GATGCCACTGACTTGTGGGTTTTGAGAAGGGTGCCACTGACTTATGG
1 TTGTGGGCTTTGAAAAGAG-TGCCACTGACTTATGGGCTTTGA-AAGGGTGCCACTAACTTGTGG
* * * * *
1235668 GGTTTGAAAAGAGTTCCATTGCC
64 GCTTT-AAAAGGGTGCCACTGAC
* * * *
1235691 TTGTGGGCTATG-AAAGGGTGCCACTAACTTATAGGCTTTGAAAGGGTGCCACTAACTTGTGGGC
1 TTGTGGGCTTTGAAAAGAGTGCCACTGACTTATGGGCTTTGAAAGGGTGCCACTAACTTGTGGGC
* *
1235755 TTTAAAAAGATGCCACTGAC
66 TTTAAAAGGGTGCCACTGAC
* * * * *
1235775 TTGTGGGCTTTTGAAAAGAGTTACCACAGGCTTGTGGGCTTTGAAAAGAGTGCCACTAACTTGTG
1 TTGTGGGC-TTTGAAAAGAG-TGCCACTGACTTATGGGCTTTG-AAAGGGTGCCACTAACTTGTG
* *
1235840 GGCTTTGAAAGGGTGCCACTAAC
63 GGCTTTAAAAGGGTGCCACTGAC
* * * *
1235863 TTGTGGGCTTTG-AAAGGGTACCACTAACTTATGGGCTTTGAAAGGATGCCACTAACTTGT-GGC
1 TTGTGGGCTTTGAAAAGAGTGCCACTGACTTATGGGCTTTGAAAGGGTGCCACTAACTTGTGGGC
* * *
1235926 TTTGAAAAGAGTGTCATTGAC
66 TTT-AAAAGGGTGCCACTGAC
* * *
1235947 TTGTGGGCTTTGAAAGGA-TTCCATTGACTTATGG
1 TTGTGGGCTTTGAAAAGAGTGCCACTGACTTATGG
1235981 ACTTAAAAGG
Statistics
Matches: 674, Mismatches: 111, Indels: 43
0.81 0.13 0.05
Matches are distributed among these distances:
83 6 0.01
84 112 0.17
85 258 0.38
86 131 0.19
87 58 0.09
88 60 0.09
89 49 0.07
ACGTcount: A:0.25, C:0.16, G:0.29, T:0.30
Consensus pattern (85 bp):
TTGTGGGCTTTGAAAAGAGTGCCACTGACTTATGGGCTTTGAAAGGGTGCCACTAACTTGTGGGC
TTTAAAAGGGTGCCACTGAC
Found at i:1236367 original size:81 final size:82
Alignment explanation
Indices: 1236254--1236417 Score: 321
Period size: 81 Copynumber: 2.0 Consensus size: 82
1236244 TGCAAACAAT
1236254 GATGTTATTGATGTTATGATGGCATGATCATAGCTCAAAAGCCTAATGCTGGGAATGACCATAAC
1 GATGTTATTGATGTTATGATGGCATGATCATAGCTCAAAAGCCTAATGCTGGGAATGACCATAAC
1236319 CATAGCAAGTTATCTAG
66 CATAGCAAGTTATCTAG
1236336 GATGTTATTGATGTTA-GATGGCATGATCATAGCTCAAAAGCCTAATGCTGGGAATGACCATAAC
1 GATGTTATTGATGTTATGATGGCATGATCATAGCTCAAAAGCCTAATGCTGGGAATGACCATAAC
1236400 CATAGCAAGTTATCTAG
66 CATAGCAAGTTATCTAG
1236417 G
1 G
1236418 TCGACTTTGG
Statistics
Matches: 82, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
81 66 0.80
82 16 0.20
ACGTcount: A:0.33, C:0.16, G:0.23, T:0.29
Consensus pattern (82 bp):
GATGTTATTGATGTTATGATGGCATGATCATAGCTCAAAAGCCTAATGCTGGGAATGACCATAAC
CATAGCAAGTTATCTAG
Found at i:1244176 original size:20 final size:20
Alignment explanation
Indices: 1244151--1244203 Score: 70
Period size: 20 Copynumber: 2.6 Consensus size: 20
1244141 AAAGATAAAC
* *
1244151 TGTATCGATACATTCATACA
1 TGTATCGATACATTCAAAAA
* *
1244171 TGTATCAATACATTGAAAAA
1 TGTATCGATACATTCAAAAA
1244191 TGTATCGATACAT
1 TGTATCGATACAT
1244204 CGGGTACTTT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.40, C:0.15, G:0.11, T:0.34
Consensus pattern (20 bp):
TGTATCGATACATTCAAAAA
Found at i:1245456 original size:9 final size:8
Alignment explanation
Indices: 1245428--1245485 Score: 80
Period size: 8 Copynumber: 7.1 Consensus size: 8
1245418 TGGACGTCAT
*
1245428 TTTTTTTA
1 TTTTTTTG
*
1245436 TTTGTTTG
1 TTTTTTTG
*
1245444 TTTTTCTG
1 TTTTTTTG
1245452 TTTTTTTG
1 TTTTTTTG
1245460 TTTTTTTG
1 TTTTTTTG
1245468 TTTTTTTTG
1 -TTTTTTTG
1245477 TTTTTTTG
1 TTTTTTTG
1245485 T
1 T
1245486 ACAAAGGATG
Statistics
Matches: 44, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
8 36 0.82
9 8 0.18
ACGTcount: A:0.02, C:0.02, G:0.12, T:0.84
Consensus pattern (8 bp):
TTTTTTTG
Found at i:1245484 original size:17 final size:17
Alignment explanation
Indices: 1245427--1245485 Score: 77
Period size: 17 Copynumber: 3.5 Consensus size: 17
1245417 TTGGACGTCA
*
1245427 TTTTTTT-TATTTGTTTG
1 TTTTTTTGT-TTTTTTTG
*
1245444 TTTTTCTG-TTTTTTTG
1 TTTTTTTGTTTTTTTTG
1245460 TTTTTTTGTTTTTTTTG
1 TTTTTTTGTTTTTTTTG
1245477 TTTTTTTGT
1 TTTTTTTGT
1245486 ACAAAGGATG
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
16 14 0.38
17 23 0.62
ACGTcount: A:0.02, C:0.02, G:0.12, T:0.85
Consensus pattern (17 bp):
TTTTTTTGTTTTTTTTG
Found at i:1246174 original size:49 final size:49
Alignment explanation
Indices: 1246078--1246553 Score: 676
Period size: 49 Copynumber: 10.0 Consensus size: 49
1246068 GGAGGATTCG
* *
1246078 ACCTTCATCTTTAAGTCCAATATCGCT-GCCTTGAATCAGCACATTGGC
1 ACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGC
1246126 ACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGC
1 ACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGC
* * * *
1246175 A----C--CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTAGC
1 ACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGC
* * *
1246218 ATCATCATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGC
1 ACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGC
*
1246267 ACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTAGC
1 ACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGC
*
1246316 ACC-TCATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGC
1 ACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGC
1246364 ACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGC
1 ACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGC
*
1246413 ACC-TCACCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGC
1 ACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGC
* * *
1246461 A----C--CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATCGGC
1 ACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGC
*
1246504 ACCTTTTCCATCTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTG
1 ACC--TT-CATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTG
1246554 ACATCCTTTT
Statistics
Matches: 385, Mismatches: 26, Indels: 30
0.87 0.06 0.07
Matches are distributed among these distances:
43 77 0.20
45 2 0.01
47 1 0.00
48 116 0.30
49 153 0.40
50 1 0.00
52 35 0.09
ACGTcount: A:0.25, C:0.27, G:0.17, T:0.30
Consensus pattern (49 bp):
ACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGC
Found at i:1246356 original size:97 final size:97
Alignment explanation
Indices: 1246078--1246553 Score: 681
Period size: 97 Copynumber: 5.0 Consensus size: 97
1246068 GGAGGATTCG
*
1246078 ACCTTCATCTTTAAGTCCAATATCGCT-GCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGT
1 ACCTTCATCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACC-TCATCTTTAAGT
1246142 CCAATGTAGCTGGCCTTGAATCAGCACATTGGC
65 CCAATGTAGCTGGCCTTGAATCAGCACATTGGC
* * * *
1246175 A----C--CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTAGCATCATCATCTTTAAGT
1 ACCTTCATCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCA-CCTCATCTTTAAGT
*
1246234 CCAATGTAGCTGGCCTTGACTCAGCACATTGGC
65 CCAATGTAGCTGGCCTTGAATCAGCACATTGGC
* *
1246267 ACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTAGCACCTCATCTTTAAGTC
1 ACCTTCATCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTCATCTTTAAGTC
*
1246332 CAATGTAGCTGGCCTTGACTCAGCACATTGGC
66 CAATGTAGCTGGCCTTGAATCAGCACATTGGC
* *
1246364 ACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTCACCTTTAAGTC
1 ACCTTCATCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTCATCTTTAAGTC
1246429 CAATGTAGCTGGCCTTGAATCAGCACATTGGC
66 CAATGTAGCTGGCCTTGAATCAGCACATTGGC
* *
1246461 A----C--CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATCGGCACCTTTTCCATCTTTA
1 ACCTTCATCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACC---T-CATCTTTA
*
1246520 AGTTCAATGTAGCTGGCCTTGAATCAGCACATTG
62 AGTCCAATGTAGCTGGCCTTGAATCAGCACATTG
1246554 ACATCCTTTT
Statistics
Matches: 351, Mismatches: 16, Indels: 26
0.89 0.04 0.07
Matches are distributed among these distances:
91 60 0.17
92 65 0.19
93 3 0.01
94 1 0.00
95 40 0.11
96 1 0.00
97 142 0.40
98 39 0.11
ACGTcount: A:0.25, C:0.27, G:0.17, T:0.30
Consensus pattern (97 bp):
ACCTTCATCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTCATCTTTAAGTC
CAATGTAGCTGGCCTTGAATCAGCACATTGGC
Found at i:1247466 original size:33 final size:33
Alignment explanation
Indices: 1247429--1247495 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
1247419 TTCAACGATT
1247429 TGTATCGATACATAAAATGTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
*** *
1247462 TGTATCGATACATATTTTTTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
1247495 T
1 T
1247496 TTAAGCTACT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.34, C:0.12, G:0.13, T:0.40
Consensus pattern (33 bp):
TGTATCGATACATAAAATGTTGTATCGATACAA
Found at i:1247467 original size:13 final size:13
Alignment explanation
Indices: 1247449--1247473 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1247439 CATAAAATGT
1247449 TGTATCGATACAA
1 TGTATCGATACAA
1247462 TGTATCGATACA
1 TGTATCGATACA
1247474 TATTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1247535 original size:13 final size:13
Alignment explanation
Indices: 1247517--1247541 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1247507 CCAAAAAAAA
1247517 TGTATCGATACAT
1 TGTATCGATACAT
1247530 TGTATCGATACA
1 TGTATCGATACA
1247542 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1247608 original size:52 final size:52
Alignment explanation
Indices: 1247550--1247678 Score: 222
Period size: 52 Copynumber: 2.5 Consensus size: 52
1247540 CACTGATCTT
* * *
1247550 TGTATCGATACATGCAGGCAACTTTGCCCAGATGTATCGATATATTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
*
1247602 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
1247654 TGTATCGATACATGCAGGCAAATTT
1 TGTATCGATACATGCAGGCAAATTT
1247679 TCATATTTCG
Statistics
Matches: 73, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
52 73 1.00
ACGTcount: A:0.34, C:0.18, G:0.18, T:0.30
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
Found at i:1356938 original size:15 final size:17
Alignment explanation
Indices: 1356910--1356942 Score: 52
Period size: 15 Copynumber: 2.1 Consensus size: 17
1356900 ATAGTTTAAT
1356910 ATATTAATATTTATTTA
1 ATATTAATATTTATTTA
1356927 ATATTAA-A-TTATTTA
1 ATATTAATATTTATTTA
1356942 A
1 A
1356943 AAATGAGAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 8 0.50
16 1 0.06
17 7 0.44
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (17 bp):
ATATTAATATTTATTTA
Found at i:1356939 original size:19 final size:19
Alignment explanation
Indices: 1356904--1356941 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
1356894 CTATTAATAG
*
1356904 TTTAATATATTAATATTTA
1 TTTAATATATAAATATTTA
1356923 TTTAATAT-TAAATTATTTA
1 TTTAATATATAAA-TATTTA
1356942 AAAATGAGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 3 0.18
19 14 0.82
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (19 bp):
TTTAATATATAAATATTTA
Found at i:1359588 original size:2 final size:2
Alignment explanation
Indices: 1359581--1359606 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
1359571 TTGATATTAT
1359581 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
1359607 GATGCTAGTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:1370300 original size:13 final size:13
Alignment explanation
Indices: 1370282--1370307 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1370272 ACAAAGATCC
1370282 ATGTATCGATACA
1 ATGTATCGATACA
1370295 ATGTATCGATACA
1 ATGTATCGATACA
1370308 CAGAAAAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1370303 original size:33 final size:33
Alignment explanation
Indices: 1370261--1370327 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
1370251 AAAATTTCCA
***
1370261 AATGTATCGATACAAAGATCCATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
*
1370294 AATGTATCGATACACAGAAAAATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
1370327 A
1 A
1370328 TTTCCTTGGC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.43, C:0.16, G:0.15, T:0.25
Consensus pattern (33 bp):
AATGTATCGATACAAAGAAAAATGTATCGATAC
Found at i:1370371 original size:19 final size:18
Alignment explanation
Indices: 1370347--1370414 Score: 83
Period size: 19 Copynumber: 3.9 Consensus size: 18
1370337 CAGTAGCTAA
1370347 TTATGTATCGATACAATAC
1 TTATGTATCGATACAA-AC
1370366 TTATGTATCGATAC--A-
1 TTATGTATCGATACAAAC
1370381 -T-TGTATCGATACAAAAC
1 TTATGTATCGATAC-AAAC
1370398 TTATGTATCGATACAAA
1 TTATGTATCGATACAAA
1370415 TTGTTGAATT
Statistics
Matches: 43, Mismatches: 0, Indels: 13
0.77 0.00 0.23
Matches are distributed among these distances:
13 11 0.26
14 1 0.02
16 2 0.05
18 4 0.09
19 25 0.58
ACGTcount: A:0.38, C:0.15, G:0.12, T:0.35
Consensus pattern (18 bp):
TTATGTATCGATACAAAC
Found at i:1370387 original size:13 final size:13
Alignment explanation
Indices: 1370369--1370393 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1370359 ACAATACTTA
1370369 TGTATCGATACAT
1 TGTATCGATACAT
1370382 TGTATCGATACA
1 TGTATCGATACA
1370394 AAACTTATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1370391 original size:32 final size:32
Alignment explanation
Indices: 1370350--1370412 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
1370340 TAGCTAATTA
*
1370350 TGTATCGATACAATACTTATGTATCGATACAT
1 TGTATCGATACAAAACTTATGTATCGATACAT
1370382 TGTATCGATACAAAACTTATGTATCGATACA
1 TGTATCGATACAAAACTTATGTATCGATACA
1370413 AATTGTTGAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.37, C:0.16, G:0.13, T:0.35
Consensus pattern (32 bp):
TGTATCGATACAAAACTTATGTATCGATACAT
Found at i:1370494 original size:21 final size:21
Alignment explanation
Indices: 1370470--1370526 Score: 105
Period size: 21 Copynumber: 2.7 Consensus size: 21
1370460 CATTTGTAGG
1370470 ATGTATCGATACATTCCACAA
1 ATGTATCGATACATTCCACAA
*
1370491 ATGTATCGATACATTCTACAA
1 ATGTATCGATACATTCCACAA
1370512 ATGTATCGATACATT
1 ATGTATCGATACATT
1370527 TGGATTTTTT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.37, C:0.19, G:0.11, T:0.33
Consensus pattern (21 bp):
ATGTATCGATACATTCCACAA
Found at i:1370554 original size:13 final size:13
Alignment explanation
Indices: 1370538--1370563 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1370528 GGATTTTTTT
1370538 TTTTTTTTTTCAA
1 TTTTTTTTTTCAA
1370551 TTTTTTTTTTCAA
1 TTTTTTTTTTCAA
1370564 ACACTTTATC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.08, G:0.00, T:0.77
Consensus pattern (13 bp):
TTTTTTTTTTCAA
Found at i:1375432 original size:21 final size:21
Alignment explanation
Indices: 1375399--1375439 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
1375389 CTAAGTAAAA
1375399 ATACGTATTGTATCAATACAT
1 ATACGTATTGTATCAATACAT
*
1375420 ATAC-TATTGGTATTAATACA
1 ATACGTATT-GTATCAATACA
1375440 CAAGGTTGAC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.39, C:0.12, G:0.10, T:0.39
Consensus pattern (21 bp):
ATACGTATTGTATCAATACAT
Found at i:1375602 original size:53 final size:53
Alignment explanation
Indices: 1375519--1375655 Score: 238
Period size: 53 Copynumber: 2.6 Consensus size: 53
1375509 AAATTGTATA
1375519 GTATCGATACACACAAATATGTATCGATACAGGACATTGGCAGTAGCCAAATTT
1 GTATCGATACACAC-AATATGTATCGATACAGGACATTGGCAGTAGCCAAATTT
* *
1375573 GTATCGATACACACAATATGTATCGATACAGGTCATTGGTAGTAGCCAAATTT
1 GTATCGATACACACAATATGTATCGATACAGGACATTGGCAGTAGCCAAATTT
*
1375626 GTATCGATACACAAAATATGTATCGATACA
1 GTATCGATACACACAATATGTATCGATACA
1375656 TTGGAAGTAG
Statistics
Matches: 80, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
53 66 0.82
54 14 0.17
ACGTcount: A:0.37, C:0.18, G:0.18, T:0.28
Consensus pattern (53 bp):
GTATCGATACACACAATATGTATCGATACAGGACATTGGCAGTAGCCAAATTT
Found at i:1375753 original size:21 final size:22
Alignment explanation
Indices: 1375697--1375774 Score: 149
Period size: 22 Copynumber: 3.6 Consensus size: 22
1375687 CGTCACTATT
1375697 CATCACTGTTCATGTATCGATA
1 CATCACTGTTCATGTATCGATA
1375719 CATCACTGTTCATGTATCGATA
1 CATCACTGTTCATGTATCGATA
1375741 CATCACT-TTCATGTATCGATA
1 CATCACTGTTCATGTATCGATA
1375762 CATCACTGTTCAT
1 CATCACTGTTCAT
1375775 AGGTCACTAT
Statistics
Matches: 55, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
21 21 0.38
22 34 0.62
ACGTcount: A:0.27, C:0.24, G:0.12, T:0.37
Consensus pattern (22 bp):
CATCACTGTTCATGTATCGATA
Found at i:1375848 original size:13 final size:13
Alignment explanation
Indices: 1375830--1375855 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1375820 ACATATTTGT
1375830 GTGTATCGATACA
1 GTGTATCGATACA
1375843 GTGTATCGATACA
1 GTGTATCGATACA
1375856 TCATAAATAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.23, T:0.31
Consensus pattern (13 bp):
GTGTATCGATACA
Found at i:1379753 original size:10 final size:10
Alignment explanation
Indices: 1379738--1379768 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
1379728 CCATTTCATA
1379738 TTTTTTTCTT
1 TTTTTTTCTT
1379748 TTTTTTTCTT
1 TTTTTTTCTT
*
1379758 TTTCTTTCTT
1 TTTTTTTCTT
1379768 T
1 T
1379769 CTTCTTCATC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87
Consensus pattern (10 bp):
TTTTTTTCTT
Found at i:1379767 original size:20 final size:21
Alignment explanation
Indices: 1379738--1379795 Score: 66
Period size: 24 Copynumber: 2.7 Consensus size: 21
1379728 CCATTTCATA
*
1379738 TTTT-TTTCTTTTTTT-TTCT
1 TTTTCTTTCTTTTTTTCATCT
1379757 TTTTCTTTCTTTCTTCTTCATCT
1 TTTTCTTTCTTT-TT-TTCATCT
1379780 TCTTTCTTTCTTTTTT
1 T-TTTCTTTCTTTTTT
1379796 ACCTAACTCT
Statistics
Matches: 33, Mismatches: 1, Indels: 7
0.80 0.02 0.17
Matches are distributed among these distances:
19 4 0.12
20 7 0.21
21 2 0.06
22 3 0.09
23 6 0.18
24 11 0.33
ACGTcount: A:0.02, C:0.19, G:0.00, T:0.79
Consensus pattern (21 bp):
TTTTCTTTCTTTTTTTCATCT
Found at i:1383182 original size:20 final size:20
Alignment explanation
Indices: 1383157--1383233 Score: 102
Period size: 20 Copynumber: 3.9 Consensus size: 20
1383147 GTAAAAAGAC
1383157 AGAATGTATCGATACATTGA
1 AGAATGTATCGATACATTGA
*
1383177 AGAATGTATCGATACATTCA
1 AGAATGTATCGATACATTGA
* *
1383197 TA-CATGTATTGATACATTGA
1 -AGAATGTATCGATACATTGA
*
1383217 AAAATGTATCGATACAT
1 AGAATGTATCGATACAT
1383234 CTGGGTACTT
Statistics
Matches: 49, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
19 1 0.02
20 47 0.96
21 1 0.02
ACGTcount: A:0.40, C:0.12, G:0.16, T:0.32
Consensus pattern (20 bp):
AGAATGTATCGATACATTGA
Found at i:1383707 original size:45 final size:48
Alignment explanation
Indices: 1383602--1383710 Score: 134
Period size: 49 Copynumber: 2.3 Consensus size: 48
1383592 CGATGTGCCA
* *
1383602 ATTCAAGGCCAGCGACATTGGGCTAAGGGAAAAGTGGACCAATGTGCTG
1 ATTCAAGGCTAGCGACATTGGGCTAA-GGAAAAGTGGACCAATATGCTG
* * *
1383651 ATTTAAGGCTAGCGACATTGGGCTAA-TAAAGGT-G-CCAATATGCTG
1 ATTCAAGGCTAGCGACATTGGGCTAAGGAAAAGTGGACCAATATGCTG
*
1383696 ATTCAATGCTAGCGA
1 ATTCAAGGCTAGCGA
1383711 TGTCAGATAG
Statistics
Matches: 53, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
45 23 0.43
46 1 0.02
47 5 0.09
49 24 0.45
ACGTcount: A:0.31, C:0.17, G:0.28, T:0.23
Consensus pattern (48 bp):
ATTCAAGGCTAGCGACATTGGGCTAAGGAAAAGTGGACCAATATGCTG
Found at i:1383889 original size:28 final size:28
Alignment explanation
Indices: 1383772--1384810 Score: 1306
Period size: 28 Copynumber: 36.6 Consensus size: 28
1383762 TTTTAAAAAA
*
1383772 AGTGCCACTAACTTGAGTGGGCTTTGAAAAG
1 AGTGCCACTGACTT--GTGGGCTTTG-AAAG
*
1383803 AGTTGCCACCGACTCGTGTGGGCTTTGAAAAG
1 AG-TGCCACTGACT--TGTGGGCTTTG-AAAG
* * ** *
1383835 AGTTACCATTGGTTTGTGGGCCTTGAAAAG
1 AG-TGCCACTGACTTGTGGGCTTTG-AAAG
* *
1383865 AGTGCCACT-TCTTGTAGGCTTTGAAAG
1 AGTGCCACTGACTTGTGGGCTTTGAAAG
*
1383892 -GTTGCCACTGACTTATGGGCTTTGAAAG
1 AG-TGCCACTGACTTGTGGGCTTTGAAAG
* *
1383920 GGTGCCACTGACTTGTGAGCTTTGAAAAG
1 AGTGCCACTGACTTGTGGGCTTTG-AAAG
* *
1383949 AGTGTCACTGACTTATGGGCTTTGAAAG
1 AGTGCCACTGACTTGTGGGCTTTGAAAG
*
1383977 GGTGCCACTGACTTGTGGGCTTTGAAAG
1 AGTGCCACTGACTTGTGGGCTTTGAAAG
1384005 -GATGCCACTGACTTGTGGGCTTTGAAA-
1 AG-TGCCACTGACTTGTGGGCTTTGAAAG
* *
1384032 AGGTGTCACTGACTTATGGGCTTTGAAAG
1 A-GTGCCACTGACTTGTGGGCTTTGAAAG
* *
1384061 GGTGCCACTAACTTGTGGGCTTTGAAAG
1 AGTGCCACTGACTTGTGGGCTTTGAAAG
* *
1384089 TGTGCCACTAACTTGTGGGCTTTGAAAG
1 AGTGCCACTGACTTGTGGGCTTTGAAAG
* *
1384117 GGTGCCACTGACTTGTGGGATTTGAAAG
1 AGTGCCACTGACTTGTGGGCTTTGAAAG
* *
1384145 -GATGCCACTAACTTGTGGGCTTTGAAGG
1 AG-TGCCACTGACTTGTGGGCTTTGAAAG
1384173 A-TGCCACTGACTTGTGGGCTTTGAAAAG
1 AGTGCCACTGACTTGTGGGCTTTG-AAAG
*
1384201 AGTGCCACTAACTTGTGGGCTTTGAAAG
1 AGTGCCACTGACTTGTGGGCTTTGAAAG
*
1384229 GGTGCCACTGACTTGTGGGCTTTGAAAG
1 AGTGCCACTGACTTGTGGGCTTTGAAAG
* * * *
1384257 AGTGCCACTAACATATGGGCTTTTAAAG
1 AGTGCCACTGACTTGTGGGCTTTGAAAG
*
1384285 GGTGCCACTGACTTGTGGGCTTTGAAAG
1 AGTGCCACTGACTTGTGGGCTTTGAAAG
* * *
1384313 AGTACCACTAACTTGTGGGCTTTGAAGG
1 AGTGCCACTGACTTGTGGGCTTTGAAAG
*
1384341 AGTGCCACTAACTTGTGGGCTTTGAAAG
1 AGTGCCACTGACTTGTGGGCTTTGAAAG
* *
1384369 GGTGCCATTGACTTGTGGGCTTTGAAA-
1 AGTGCCACTGACTTGTGGGCTTTGAAAG
*
1384396 AGATGCCACTAACTTGTGGGCTTTGAAAG
1 AG-TGCCACTGACTTGTGGGCTTTGAAAG
*
1384425 GGTGCCACTGACTTGTGGGCTTTGAAAAG
1 AGTGCCACTGACTTGTGGGCTTTG-AAAG
*
1384454 AGTACCACTGACTTGTGGGCTTTGAAAG
1 AGTGCCACTGACTTGTGGGCTTTGAAAG
* *
1384482 GGTGCCACTCACTTGTGGGCTTTGAAAG
1 AGTGCCACTGACTTGTGGGCTTTGAAAG
* *
1384510 GGTGCCATTGACTTGTGGGCTTTGAAAGG
1 AGTGCCACTGACTTGTGGGCTTTGAAA-G
* * *
1384539 AGTGCCACTGATTTGTGGGTTTTAAAAG
1 AGTGCCACTGACTTGTGGGCTTTGAAAG
*
1384567 AAGTGCCACTGACTTGTGGGCTTTGAAGG
1 -AGTGCCACTGACTTGTGGGCTTTGAAAG
*
1384596 A-TGCCACTAACTTGTGGGCTTTGAAAG
1 AGTGCCACTGACTTGTGGGCTTTGAAAG
*
1384623 GGTGCCACTGACTTGTGGGCTTTGAAAGG
1 AGTGCCACTGACTTGTGGGCTTTGAAA-G
*
1384652 AGTGCCACTGACTTGTGGGCTTTAAAAAG
1 AGTGCCACTGACTTGTGGGCTTT-GAAAG
*
1384681 AGTGCCACTGACTTGTGGGCTTTGAAGG
1 AGTGCCACTGACTTGTGGGCTTTGAAAG
1384709 A-TGCCACTGACTTGTGGGCTTTGAAAG
1 AGTGCCACTGACTTGTGGGCTTTGAAAG
*
1384736 GGTGCCACTGACTTGTGGGCTTTGAAAAG
1 AGTGCCACTGACTTGTGGGCTTTG-AAAG
*
1384765 AGTGCCACTGACTTGTGGGCTTT-AAAA
1 AGTGCCACTGACTTGTGGGCTTTGAAAG
1384792 AGGTGCCACTGACTTGTGG
1 A-GTGCCACTGACTTGTGG
1384811 ACTTAAAAGG
Statistics
Matches: 886, Mismatches: 96, Indels: 55
0.85 0.09 0.05
Matches are distributed among these distances:
26 1 0.00
27 88 0.10
28 542 0.61
29 199 0.22
30 20 0.02
31 2 0.00
32 33 0.04
34 1 0.00
ACGTcount: A:0.23, C:0.17, G:0.31, T:0.29
Consensus pattern (28 bp):
AGTGCCACTGACTTGTGGGCTTTGAAAG
Found at i:1391072 original size:13 final size:13
Alignment explanation
Indices: 1391025--1391054 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
1391015 GTAAACCCAG
1391025 AATGTATCGATAC
1 AATGTATCGATAC
1391038 AATGTATCGATAC
1 AATGTATCGATAC
1391051 AATG
1 AATG
1391055 AACAATGTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.40, C:0.13, G:0.17, T:0.30
Consensus pattern (13 bp):
AATGTATCGATAC
Found at i:1391786 original size:42 final size:42
Alignment explanation
Indices: 1391735--1391916 Score: 138
Period size: 42 Copynumber: 4.2 Consensus size: 42
1391725 TCTTAAGGAC
1391735 AAAGTGAAAAAGAGTATGTCCTGCT-TTTCGAGGACAAAGGAAA
1 AAAG-GAAAAAGAGTATGTCCTGCTCTTT-GAGGACAAAGGAAA
* * * *
1391778 AAAGGAAAATGA-AATGCGTCCTGCTCTTTGAGAACAAAAG-AA
1 AAAGGAAAAAGAGTAT--GTCCTGCTCTTTGAGGACAAAGGAAA
* ***
1391820 AAAGGAAAATAAAGTGCATCCTGCTCTTTGAGGACAAAAGGGAAA
1 AAAGGAAAA-AGAGTATGTCCTGCTCTTTGAGGAC-AAA-GGAAA
* * ** *
1391865 AGAAGGGAATAA-AGTGTGTCCTATTCTTTGAGGACAAAGGAGA
1 A-AA-GGAAAAAGAGTATGTCCTGCTCTTTGAGGACAAAGGAAA
1391908 AAAGGAAAA
1 AAAGGAAAA
1391917 GGCGTCCTAC
Statistics
Matches: 110, Mismatches: 19, Indels: 22
0.73 0.13 0.15
Matches are distributed among these distances:
41 7 0.06
42 36 0.33
43 30 0.27
44 7 0.06
45 22 0.20
46 3 0.03
47 5 0.05
ACGTcount: A:0.44, C:0.12, G:0.25, T:0.19
Consensus pattern (42 bp):
AAAGGAAAAAGAGTATGTCCTGCTCTTTGAGGACAAAGGAAA
Found at i:1391902 original size:87 final size:86
Alignment explanation
Indices: 1391753--1391916 Score: 201
Period size: 87 Copynumber: 1.9 Consensus size: 86
1391743 AAAGAGTATG
*
1391753 TCCTGCTTTTCGAGGACAAAGGAAAAAAGGAAAATGAAATGCGTCCTGCTCTTTGAGAACAAAAG
1 TCCTGCTTTTCGAGGACAAAGGAAAAAAGGAAAATGAAATGCGTCCTACTCTTTGAGAACAAAAG
1391818 A-AAAAGGAAAATAAAGTGCA
66 AGAAAAGGAAAATAAAGTGCA
* * * *
1391838 TCCTGCTCTTT-GAGGACAAAAGGGAAAAGAAGG-GAAT-AAAGTGTGTCCTATTCTTTGAGGAC
1 TCCTGCT-TTTCGAGGAC-AAA-GGAAAA-AAGGAAAATGAAA-TGCGTCCTACTCTTTGAGAAC
*
1391900 AAAGGAGAAAAGGAAAA
61 AAAAGAGAAAAGGAAAA
1391917 GGCGTCCTAC
Statistics
Matches: 67, Mismatches: 6, Indels: 9
0.82 0.07 0.11
Matches are distributed among these distances:
85 13 0.19
86 9 0.13
87 31 0.46
88 14 0.21
ACGTcount: A:0.43, C:0.13, G:0.25, T:0.20
Consensus pattern (86 bp):
TCCTGCTTTTCGAGGACAAAGGAAAAAAGGAAAATGAAATGCGTCCTACTCTTTGAGAACAAAAG
AGAAAAGGAAAATAAAGTGCA
Found at i:1392193 original size:61 final size:58
Alignment explanation
Indices: 1392076--1392553 Score: 466
Period size: 55 Copynumber: 8.3 Consensus size: 58
1392066 GGAGAGAGCA
* * * * *
1392076 TCCTACTCTTTGAGGACTGGGAAGTGCCACTAATTTGTGTGGGCTTTGCAAAGAGAAAGCG
1 TCCTGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTT--AAAGA-AAAGCG
* * * * * *
1392137 TCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTCGAGTGGTCTTTAAAAGGAGAAAACA
1 TCCTGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTT-AAA-GA-AAAGCG
* ** *
1392198 TCCTGCTTTTTGAGGACTAGAAAACGCCACCAACTTGTGTGGGCTTT---GAAAGGCG
1 TCCTGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTTAAAGAAAAGCG
* * * *
1392253 TCTTGCTCTTTGAGGACTGGAAAATGTCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCG
1 TCCTGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTT-AAA-GAAAA-GCG
* * * *
1392314 TCCTGGTCTTTGAGGACTAGAAAAGTGCCATCAACTTGTGTGGGCTTT--A-AAAGGCA
1 TCCTGCTCTTTGAGGACTAG-AAAGTGCCACCAACTTGTGTGGGCTTTAAAGAAAAGCG
* * * *
1392370 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTTTGGGCTTT---GAAAGGCG
1 TCCTGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTTAAAGAAAAGCG
* * *
1392425 TCCTGCTCTTTGAGGACTAAAAAATGCCACCAACTTGTGTGGGCTTT---GAAAGGCG
1 TCCTGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTTAAAGAAAAGCG
*
1392480 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTT---GAAAGGCG
1 TCCTGCTCTTTGAGGACTAGAAA-GTGCCACCAACTTGTGTGGGCTTTAAAGAAAAGCG
1392535 TCCTGCTCTTTGAGGACTA
1 TCCTGCTCTTTGAGGACTA
1392554 AAGGGTGAAA
Statistics
Matches: 359, Mismatches: 47, Indels: 27
0.83 0.11 0.06
Matches are distributed among these distances:
54 3 0.01
55 194 0.54
56 22 0.06
57 3 0.01
59 1 0.00
60 7 0.02
61 105 0.29
62 24 0.07
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.28
Consensus pattern (58 bp):
TCCTGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTTAAAGAAAAGCG
Found at i:1392290 original size:55 final size:55
Alignment explanation
Indices: 1392130--1392553 Score: 528
Period size: 55 Copynumber: 7.5 Consensus size: 55
1392120 TTTGCAAAGA
** * * *
1392130 GAAA-GCGTCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTCGAGTGGTCTTT
1 GAAAGGCGTCCTGCTCTTTGAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTT
* * * *
1392184 AAAAGGAGAAAACATCCTGCTTTTTGAGGACTAGAAAACGCCACCAACTTGTGTGGGCTTT
1 GAAA-G-G----CGTCCTGCTCTTTGAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTT
* * *
1392245 GAAAGGCGTCTTGCTCTTTGAGGACTGGAAAATGTCACCAACTTGTGTGGGCTTT
1 GAAAGGCGTCCTGCTCTTTGAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTT
* *
1392300 AAAAGGAAAAGGCGTCCTGGTCTTTGAGGACTAGAAAAGTGCCATCAACTTGTGTGGGCTTT
1 -----G-AAAGGCGTCCTGCTCTTTGAGGACTAGAAAA-TGCCACCAACTTGTGTGGGCTTT
* * * *
1392362 AAAAGGCATCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTTTGGGCTTT
1 GAAAGGCGTCCTGCTCTTTGAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTT
*
1392417 GAAAGGCGTCCTGCTCTTTGAGGACTAAAAAATGCCACCAACTTGTGTGGGCTTT
1 GAAAGGCGTCCTGCTCTTTGAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTT
*
1392472 GAAAGGCGTCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTT
1 GAAAGGCGTCCTGCTCTTTGAGGACTAGAAA-ATGCCACCAACTTGTGTGGGCTTT
1392527 GAAAGGCGTCCTGCTCTTTGAGGACTA
1 GAAAGGCGTCCTGCTCTTTGAGGACTA
1392554 AAGGGTGAAA
Statistics
Matches: 320, Mismatches: 34, Indels: 30
0.83 0.09 0.08
Matches are distributed among these distances:
54 6 0.02
55 189 0.59
56 28 0.09
57 1 0.00
59 1 0.00
60 2 0.01
61 72 0.22
62 21 0.07
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (55 bp):
GAAAGGCGTCCTGCTCTTTGAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTT
Found at i:1392434 original size:172 final size:170
Alignment explanation
Indices: 1392076--1392553 Score: 619
Period size: 172 Copynumber: 2.8 Consensus size: 170
1392066 GGAGAGAGCA
* * * * *
1392076 TCCTACTCTTTGAGGACTGGGAAGTGCCACTAATTTGTGTGGGCTTTGCAAAGAGAAA-GCGTCC
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTT--AAAGA-AAAGGCGTCC
* * *
1392140 TGCTCTTTGAGGACTAG-AAGGTGCCACCAACTCGAGTGGTCTTTAAAAGGAGAAAACATCCTGC
63 TGCTCTTTGAGGACTAGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAA-G-G----CATCCTGC
*
1392204 TTTTTGAGGACTAGAAAACGCCACCAACTTGTGTGGGCTTTGAAAGGCG
122 TCTTTGAGGACTAGAAAACGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* *
1392253 TCTTGCTCTTTGAGGACTGGAAAATGTCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGTCCT
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTT-AAA-GAAAAGGCGTCCT
* * *
1392318 GGTCTTTGAGGACTAGAAAAGTGCCATCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTGA
64 GCTCTTTGAGGACTAGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTGA
* * *
1392383 GGACTGGAAAATGCCACCAACTTGTTTGGGCTTTGAAAGGCG
129 GGACTAGAAAACGCCACCAACTTGTGTGGGCTTTGAAAGGCG
**
1392425 TCCTGCTCTTTGAGGACTAAAAAATGCCACCAACTTGTGTGGGCTTT---G-AAAGGCGTCCTGC
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAGAAAAGGCGTCCTGC
* *
1392486 TCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGG
66 TCTTTGAGGACTAGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTGAGG
1392550 ACTA
131 ACTA
1392554 AAGGGTGAAA
Statistics
Matches: 270, Mismatches: 28, Indels: 18
0.85 0.09 0.06
Matches are distributed among these distances:
165 51 0.19
166 24 0.09
167 1 0.00
172 96 0.36
176 7 0.03
177 65 0.24
178 26 0.10
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.28
Consensus pattern (170 bp):
TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAGAAAAGGCGTCCTGC
TCTTTGAGGACTAGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTGAGG
ACTAGAAAACGCCACCAACTTGTGTGGGCTTTGAAAGGCG
Found at i:1393666 original size:7 final size:8
Alignment explanation
Indices: 1393643--1393682 Score: 62
Period size: 8 Copynumber: 4.8 Consensus size: 8
1393633 CTTTTCTCGT
1393643 TTTTTCTTG
1 TTTTT-TTG
1393652 TTTTTTTTG
1 -TTTTTTTG
1393661 TTTTTTTG
1 TTTTTTTG
1393669 TTTTTTTG
1 TTTTTTTG
1393677 TTTTTT
1 TTTTTT
1393683 AATTTTTTTA
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
8 22 0.73
9 3 0.10
10 5 0.17
ACGTcount: A:0.00, C:0.03, G:0.10, T:0.88
Consensus pattern (8 bp):
TTTTTTTG
Found at i:1393688 original size:16 final size:16
Alignment explanation
Indices: 1393653--1393691 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
1393643 TTTTTCTTGT
**
1393653 TTTTTTTGTTTTTTTG
1 TTTTTTTGTTTTTTAA
1393669 TTTTTTTGTTTTTTAA
1 TTTTTTTGTTTTTTAA
1393685 TTTTTTT
1 TTTTTTT
1393692 AAAAAAATGT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.05, C:0.00, G:0.08, T:0.87
Consensus pattern (16 bp):
TTTTTTTGTTTTTTAA
Found at i:1396704 original size:22 final size:21
Alignment explanation
Indices: 1396679--1396721 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 21
1396669 CTTTTTTGGG
1396679 AATTCAGACTATATTT-GCCACC
1 AATTCAGA--ATATTTGGCCACC
*
1396701 AATTCTGAATATTTGGCCACC
1 AATTCAGAATATTTGGCCACC
1396722 GCGAGAAAAC
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
20 6 0.32
21 6 0.32
22 7 0.37
ACGTcount: A:0.30, C:0.26, G:0.12, T:0.33
Consensus pattern (21 bp):
AATTCAGAATATTTGGCCACC
Found at i:1405781 original size:79 final size:79
Alignment explanation
Indices: 1405645--1405790 Score: 188
Period size: 79 Copynumber: 1.8 Consensus size: 79
1405635 TGGAGATAAC
* * *
1405645 AACAGGGCTGGAGTATCCCTGATTATAGAAAATCGGTATTTTGAAAATAAAATCAGGGTTGGAGT
1 AACAGGGCTGGAGTATCCCTGATTATAGAAAATCGATATTTAGAAAATAAAACCAGGGTTGGAGT
1405710 ATTCACTCGAAAAT
66 ATTCACTCGAAAAT
* * * **
1405724 AACAGGGTTGGAGTATCCCTGATTGT-GAAAAATCGATGCTTTAG-AAATAAGGCCAGGGTTGGA
1 AACAGGGCTGGAGTATCCCTGATTATAG-AAAATCGAT-ATTTAGAAAATAAAACCAGGGTTGGA
1405787 GTAT
64 GTAT
1405791 CCCCGATTGT
Statistics
Matches: 57, Mismatches: 8, Indels: 4
0.83 0.12 0.06
Matches are distributed among these distances:
78 1 0.02
79 52 0.91
80 4 0.07
ACGTcount: A:0.34, C:0.12, G:0.26, T:0.27
Consensus pattern (79 bp):
AACAGGGCTGGAGTATCCCTGATTATAGAAAATCGATATTTAGAAAATAAAACCAGGGTTGGAGT
ATTCACTCGAAAAT
Found at i:1405793 original size:51 final size:51
Alignment explanation
Indices: 1405726--1405845 Score: 159
Period size: 51 Copynumber: 2.4 Consensus size: 51
1405716 TCGAAAATAA
* * * *
1405726 CAGGGTTGGAGTATCCCTGATTGTGAAAAATCGATGCTTTAGAAATAAGGC
1 CAGGGTTGGAGTATCCCCGATTGTGAAAAATCAATACTTTAGAAATAAAGC
* * * *
1405777 CAGGGTTGGAGTATCCCCGATTGTGAGAAATCAATATTTTGGAAATAAAGT
1 CAGGGTTGGAGTATCCCCGATTGTGAAAAATCAATACTTTAGAAATAAAGC
*
1405828 CGGGGTTGGAGTATCCCC
1 CAGGGTTGGAGTATCCCC
1405846 TCAGAAATAA
Statistics
Matches: 60, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
51 60 1.00
ACGTcount: A:0.29, C:0.15, G:0.28, T:0.28
Consensus pattern (51 bp):
CAGGGTTGGAGTATCCCCGATTGTGAAAAATCAATACTTTAGAAATAAAGC
Found at i:1405862 original size:79 final size:79
Alignment explanation
Indices: 1405779--1405924 Score: 202
Period size: 79 Copynumber: 1.8 Consensus size: 79
1405769 AATAAGGCCA
* * * * * *
1405779 GGGTTGGAGTATCCCCGATTGTGAGAAATCAATATTTTGGAAATAAAGTCGGGGTTGGAGTATCC
1 GGGTTAGAGTATCCCCGATTGTGAAAAATCAATATTTTGGAAATAAAATCAGAGTTAGAGTATCC
1405844 CCTCAGAAATAACG
66 CCTCAGAAATAACG
** * *
1405858 GGGTTAGAGTATCCCCGATTGTGAAAAATTGATGTTTTGTAAATAAAATCAGAGTTAGAGTATCC
1 GGGTTAGAGTATCCCCGATTGTGAAAAATCAATATTTTGGAAATAAAATCAGAGTTAGAGTATCC
1405923 CC
66 CC
1405925 GATTGTGGAA
Statistics
Matches: 57, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
79 57 1.00
ACGTcount: A:0.32, C:0.14, G:0.25, T:0.29
Consensus pattern (79 bp):
GGGTTAGAGTATCCCCGATTGTGAAAAATCAATATTTTGGAAATAAAATCAGAGTTAGAGTATCC
CCTCAGAAATAACG
Found at i:1405923 original size:51 final size:51
Alignment explanation
Indices: 1405860--1405975 Score: 171
Period size: 51 Copynumber: 2.3 Consensus size: 51
1405850 AAATAACGGG
*
1405860 GTTAGAGTATCCCCGATTGTGAAAAATTGATGTTTT-GTAAATAAAATCAGA
1 GTTAGAGTATCCCCGATTGTGAAAAATTGATGTTTTAG-AAATAAAACCAGA
* * *
1405911 GTTAGAGTATCCCCGATTGTGGAAAATTGATGTTTTAGAAATAAAACCGGG
1 GTTAGAGTATCCCCGATTGTGAAAAATTGATGTTTTAGAAATAAAACCAGA
*
1405962 GTTGGAGTATCCCC
1 GTTAGAGTATCCCC
1405976 TTGGAAATAA
Statistics
Matches: 59, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
51 58 0.98
52 1 0.02
ACGTcount: A:0.33, C:0.13, G:0.23, T:0.31
Consensus pattern (51 bp):
GTTAGAGTATCCCCGATTGTGAAAAATTGATGTTTTAGAAATAAAACCAGA
Found at i:1406048 original size:50 final size:51
Alignment explanation
Indices: 1405986--1406102 Score: 173
Period size: 51 Copynumber: 2.3 Consensus size: 51
1405976 TTGGAAATAA
* *
1405986 TGGGGTTAGAGTATCCTCGATGGTG-AAAATTGGTGTTTTGGAAATAAAAC
1 TGGGGTTAGAGTATCCTCGATGGTGAAAAATTGATGTTTTAGAAATAAAAC
* *
1406036 TGGGGTTAGAGTATCCTTGATTGTGAAAAATTGATGTTTTAGAAATAAAAC
1 TGGGGTTAGAGTATCCTCGATGGTGAAAAATTGATGTTTTAGAAATAAAAC
* *
1406087 TGAGGTTGGAGTATCC
1 TGGGGTTAGAGTATCC
1406103 CCTCGGAAAT
Statistics
Matches: 60, Mismatches: 6, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
50 23 0.38
51 37 0.62
ACGTcount: A:0.31, C:0.08, G:0.28, T:0.33
Consensus pattern (51 bp):
TGGGGTTAGAGTATCCTCGATGGTGAAAAATTGATGTTTTAGAAATAAAAC
Found at i:1406076 original size:129 final size:130
Alignment explanation
Indices: 1405689--1406164 Score: 560
Period size: 130 Copynumber: 3.7 Consensus size: 130
1405679 GGTATTTTGA
* * * * * * * *
1405689 AAATAAAATCAGGGTTGGAGTATTCACTCGAAAATAACAGGGTTGGAGTATCCCTGATTGTGAAA
1 AAATAAAACCGGGGTTGGAGTATCCCCTCGGAAATAACGGGGTTAGAGTATCCCCGATTGTGAAA
* * * * *** * * ** * *
1405754 AATCGATGCTTTAGAAATAAGGCCAGGGTTGGAGTATCCCCGATTGTGAGAAATCAATATTTTGG
66 AATTGGTGTTTTGGAAATAAAATCAGGGTTAGAGTATCCCCGATTGTGAAAAATTGATGTTTTAG
** *
1405819 AAATAAAGTCGGGGTTGGAGTATCCCCTCAGAAATAACGGGGTTAGAGTATCCCCGATTGTGAAA
1 AAATAAAACCGGGGTTGGAGTATCCCCTCGGAAATAACGGGGTTAGAGTATCCCCGATTGTGAAA
* * * *
1405884 AATTGATGTTTTGTAAATAAAATCAGAGTTAGAGTATCCCCGATTGTGGAAAATTGATGTTTTAG
66 AATTGGTGTTTTGGAAATAAAATCAGGGTTAGAGTATCCCCGATTGTGAAAAATTGATGTTTTAG
* * * *
1405949 AAATAAAACCGGGGTTGGAGTATCCCCTTGGAAATAATGGGGTTAGAGTATCCTCGATGGTG-AA
1 AAATAAAACCGGGGTTGGAGTATCCCCTCGGAAATAACGGGGTTAGAGTATCCCCGATTGTGAAA
* **
1406013 AATTGGTGTTTTGGAAATAAAA-CTGGGGTTAGAGTATCCTTGATTGTGAAAAATTGATGTTTTA
66 AATTGGTGTTTTGGAAATAAAATC-AGGGTTAGAGTATCCCCGATTGTGAAAAATTGATGTTTTA
1406077 G
130 G
* * * **
1406078 AAATAAAACTGAGGTTGGAGTATCCCCTCGGAAATAACGAGGTCGGAGTATCCCCGATTGTGAAA
1 AAATAAAACCGGGGTTGGAGTATCCCCTCGGAAATAACGGGGTTAGAGTATCCCCGATTGTGAAA
*
1406143 AATTAGTGTTTTGGAAATAAAA
66 AATTGGTGTTTTGGAAATAAAA
1406165 ACATGGATGA
Statistics
Matches: 296, Mismatches: 48, Indels: 4
0.85 0.14 0.01
Matches are distributed among these distances:
128 1 0.00
129 111 0.38
130 184 0.62
ACGTcount: A:0.33, C:0.12, G:0.26, T:0.29
Consensus pattern (130 bp):
AAATAAAACCGGGGTTGGAGTATCCCCTCGGAAATAACGGGGTTAGAGTATCCCCGATTGTGAAA
AATTGGTGTTTTGGAAATAAAATCAGGGTTAGAGTATCCCCGATTGTGAAAAATTGATGTTTTAG
Found at i:1406195 original size:129 final size:128
Alignment explanation
Indices: 1405813--1406201 Score: 331
Period size: 129 Copynumber: 3.0 Consensus size: 128
1405803 GAAATCAATA
* ** * * * * *
1405813 TTTTGGAAATAAAGTCGGGGTTGGAGTATCCCCTCAGAAATAACGGGGTTAGAGTATCCCCGATT
1 TTTTAGAAATAAAACCGAGGTTGGAGTATCCCCTCGGAAATAACGAGGTCAGAGTATCCCCGATG
* * * * ** ** **
1405878 GTGAAAAATT-GATGTTTTGTAAATAAAATCAGAGTTAGAGTATCCCCGATTGTG-GAAAATTGA
66 GTG-AAAATTAG-TGTTTTGGAAATAAAA-CTGGGATAGAAAAT-CTTGATTACGAGAAAATTGA
1405941 TG
127 TG
* * * * * *
1405943 TTTTAGAAATAAAACCGGGGTTGGAGTATCCCCTTGGAAATAATGGGGTTAGAGTATCCTCGATG
1 TTTTAGAAATAAAACCGAGGTTGGAGTATCCCCTCGGAAATAACGAGGTCAGAGTATCCCCGATG
* * ** **
1406008 GTGAAAATTGGTGTTTTGGAAATAAAACTGGGGTTAGAGTATCCTTGATTGTGA-AAAATTGATG
66 GTGAAAATTAGTGTTTTGGAAATAAAACT-GGGATAGAAAAT-CTTGATTACGAGAAAATTGATG
* * *
1406072 TTTTAGAAATAAAACTGAGGTTGGAGTATCCCCTCGGAAATAACGAGGTCGGAGTATCCCCGATT
1 TTTTAGAAATAAAACCGAGGTTGGAGTATCCCCTCGGAAATAACGAGGTCAGAGTATCCCCGATG
**
1406137 GTGAAAAATTAGTGTTTTGGAAATAAAAACAT-GGAT-GAAAAT-TTTTTTACGAAGAAAATTGA
66 GTG-AAAATTAGTGTTTTGGAAAT-AAAAC-TGGGATAGAAAATCTTGATTACG-AGAAAATTGA
1406199 TG
127 TG
1406201 T
1 T
1406202 GAGTGAAGAT
Statistics
Matches: 221, Mismatches: 30, Indels: 17
0.82 0.11 0.06
Matches are distributed among these distances:
127 5 0.02
128 2 0.01
129 125 0.57
130 83 0.38
131 5 0.02
132 1 0.00
ACGTcount: A:0.33, C:0.11, G:0.25, T:0.31
Consensus pattern (128 bp):
TTTTAGAAATAAAACCGAGGTTGGAGTATCCCCTCGGAAATAACGAGGTCAGAGTATCCCCGATG
GTGAAAATTAGTGTTTTGGAAATAAAACTGGGATAGAAAATCTTGATTACGAGAAAATTGATG
Found at i:1407855 original size:20 final size:20
Alignment explanation
Indices: 1407830--1407901 Score: 92
Period size: 20 Copynumber: 3.6 Consensus size: 20
1407820 TCACAATTTT
*
1407830 TATCGATACATTGGTCATTG
1 TATCGATACATTGCTCATTG
1407850 TATCGATACATTGCTCATTG
1 TATCGATACATTGCTCATTG
* * *
1407870 TATTGATACATT-TTACAATG
1 TATCGATACATTGCT-CATTG
1407890 TATCGATACATT
1 TATCGATACATT
1407902 CAGGCATTTT
Statistics
Matches: 46, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
19 1 0.02
20 45 0.98
ACGTcount: A:0.29, C:0.15, G:0.14, T:0.42
Consensus pattern (20 bp):
TATCGATACATTGCTCATTG
Found at i:1410329 original size:79 final size:78
Alignment explanation
Indices: 1410183--1410456 Score: 317
Period size: 79 Copynumber: 3.5 Consensus size: 78
1410173 TTCATCTCGT
* * *
1410183 GGATACTCCAACCCCGGTTTTATTT-TCAAAACAACAATTT-T--TCATCGGGGATACTCCAACC
1 GGATACTCCAA-CCCGATTTTATTTCT-AAAACATCAATTTCTAATAATCGGGGATACTCCAACC
1410244 CCGTTATTTTCGAGG
64 CCGTTATTTTCGAGG
* ** * * *
1410259 GAATACTCCAACCCTGCCTTTATTTCTAAAATATTAATTTCTAATAATTGGGGATACTCCAACCC
1 GGATACTCCAACCC-GATTTTATTTCTAAAACATCAATTTCTAATAATCGGGGATACTCCAACCC
*
1410324 TGTTATTTTCGAGG
65 CGTTATTTTCGAGG
* * *
1410338 GGATACTCCAACCCCAATTTTATTTCTAAAACATCAATTTTTCATAATCGGGGATACTCCAACCC
1 GGATACTCCAA-CCCGATTTTATTTCTAAAACATCAATTTCTAATAATCGGGGATACTCCAACCC
1410403 CGTTA-TTTCGAGG
65 CGTTATTTTCGAGG
* * *
1410416 GGATACTTCAACTCCGGTTTTATTTCTAAAACA-CAAATTCT
1 GGATACTCCAAC-CCGATTTTATTTCTAAAACATCAATTTCT
1410457 CCACAATCGG
Statistics
Matches: 167, Mismatches: 24, Indels: 13
0.82 0.12 0.06
Matches are distributed among these distances:
75 3 0.02
76 28 0.17
77 9 0.05
78 36 0.22
79 88 0.53
80 3 0.02
ACGTcount: A:0.29, C:0.24, G:0.13, T:0.34
Consensus pattern (78 bp):
GGATACTCCAACCCGATTTTATTTCTAAAACATCAATTTCTAATAATCGGGGATACTCCAACCCC
GTTATTTTCGAGG
Found at i:1410490 original size:50 final size:51
Alignment explanation
Indices: 1410415--1410528 Score: 140
Period size: 50 Copynumber: 2.3 Consensus size: 51
1410405 TTATTTCGAG
** *
1410415 GGGATACTTCAACTCCGGTTTTATTTCTAAAACACAAATTCTCCACAATC-
1 GGGATACTTCAACTCCAATTTTATTTCCAAAACACAAATTCTCCACAATCA
* * * **
1410465 GGGATACTTTAACTCCAATTTTATTTCCAAAACACTAATTTTTTACAATCA
1 GGGATACTTCAACTCCAATTTTATTTCCAAAACACAAATTCTCCACAATCA
*
1410516 GGGATACTCCAAC
1 GGGATACTTCAAC
1410529 CCCGTTATTT
Statistics
Matches: 53, Mismatches: 10, Indels: 1
0.83 0.16 0.02
Matches are distributed among these distances:
50 42 0.79
51 11 0.21
ACGTcount: A:0.33, C:0.24, G:0.10, T:0.33
Consensus pattern (51 bp):
GGGATACTTCAACTCCAATTTTATTTCCAAAACACAAATTCTCCACAATCA
Found at i:1410650 original size:130 final size:127
Alignment explanation
Indices: 1410357--1410820 Score: 457
Period size: 131 Copynumber: 3.6 Consensus size: 127
1410347 AACCCCAATT
* *
1410357 TTATTTCTAAAACATCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTCGAGGGGATAC
1 TTATTTCTAAAACATCAATTTTTCATAATCAGGGATACTCCAACCCCGTTATTTTGAGGGGATAC
* * * * * * *
1410422 TTCAACTCCGGTTTTATTTCTAAAACACAAATTCTCCACAATCGGGATACTTTAACTCC-AATT
66 TCCAACCCCGGTTTTATTTCTAAAACACGATTTCT-CACAATCAGGATACTTTAAC-CCTAGTC
* * *
1410485 TTATTTCCAAAACA-CTAATTTTTTACAATCAGGGATACTCCAACCCCGTTATTTCTGAGGGGAT
1 TTATTTCTAAAACATC-AATTTTTCATAATCAGGGATACTCCAACCCCGTTATTT-TGAGGGGAT
* * * * * *
1410549 ACTCAAACCCCGGCTTTATTTCCAAAATATTGATTTCTCACAATCAGGCATACTTTAACCCTGGT
64 ACTCCAACCCCGGTTTTATTTCTAAAACA-CGATTTCTCACAATCAGG-ATACTTTAACCCTAGT
1410614 C
127 C
* ** * * *
1410615 TTATTTCTAAAATATTGATTTTTCATAATCGGGGATACTCCAACCCCATTATTTTCACTGGGGAT
1 TTATTTCTAAAACATCAATTTTTCATAATCAGGGATACTCCAACCCCGTTATTTTGA--GGGGAT
* * * * * * *
1410680 ACACCAATCCCGATTTTATTTTTAAAACACCGATTT-TCTATAATCGAGGATACTTCAACCCTTG
64 ACTCCAACCCCGGTTTTATTTCTAAAACA-CGATTTCTC-ACAATC-AGGATACTTTAACCCTAG
*
1410744 CC
126 TC
* * * * * *
1410746 TTATATCTAAATCATCGATTTTTCATAATTAGGGATACTCTAACCCCGTTATTTTCGAGGGAATA
1 TTATTTCTAAAACATCAATTTTTCATAATCAGGGATACTCCAACCCCGTTATTTT-GAGGGGATA
1410811 CTCCAACCCC
65 CTCCAACCCC
1410821 ATTATTATCT
Statistics
Matches: 272, Mismatches: 53, Indels: 20
0.79 0.15 0.06
Matches are distributed among these distances:
127 1 0.00
128 48 0.18
129 44 0.16
130 77 0.28
131 98 0.36
132 4 0.01
ACGTcount: A:0.30, C:0.24, G:0.12, T:0.35
Consensus pattern (127 bp):
TTATTTCTAAAACATCAATTTTTCATAATCAGGGATACTCCAACCCCGTTATTTTGAGGGGATAC
TCCAACCCCGGTTTTATTTCTAAAACACGATTTCTCACAATCAGGATACTTTAACCCTAGTC
Found at i:1410660 original size:51 final size:51
Alignment explanation
Indices: 1410543--1410661 Score: 141
Period size: 51 Copynumber: 2.3 Consensus size: 51
1410533 TTATTTCTGA
1410543 GGGGATACTCAAACCCCGGCTTTATTTCCAAAATATTGATTTCTCACAATC
1 GGGGATACTCAAACCCCGGCTTTATTTCCAAAATATTGATTTCTCACAATC
* * ** * * * *
1410594 AGGCATACTTTAACCCTGG-TCTTATTTCTAAAATATTGATTTTTCATAATC
1 GGGGATACTCAAACCCCGGCT-TTATTTCCAAAATATTGATTTCTCACAATC
*
1410645 GGGGATACTCCAACCCC
1 GGGGATACTCAAACCCC
1410662 ATTATTTTCA
Statistics
Matches: 54, Mismatches: 13, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
50 1 0.02
51 53 0.98
ACGTcount: A:0.29, C:0.24, G:0.13, T:0.34
Consensus pattern (51 bp):
GGGGATACTCAAACCCCGGCTTTATTTCCAAAATATTGATTTCTCACAATC
Found at i:1415597 original size:13 final size:13
Alignment explanation
Indices: 1415579--1415604 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1415569 CAATTTTTTG
1415579 TGTATCGATACAT
1 TGTATCGATACAT
1415592 TGTATCGATACAT
1 TGTATCGATACAT
1415605 ACTTTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1415616 original size:32 final size:33
Alignment explanation
Indices: 1415559--1415620 Score: 99
Period size: 32 Copynumber: 1.9 Consensus size: 33
1415549 TGCAAGCCAA
**
1415559 TGTATCGATACAATTTTTTGTGTATCGATACAT
1 TGTATCGATACAATACTTTGTGTATCGATACAT
1415592 TGTATCGATAC-ATACTTTGTGTATCGATA
1 TGTATCGATACAATACTTTGTGTATCGATA
1415621 TAAGTTTGGC
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
32 16 0.59
33 11 0.41
ACGTcount: A:0.27, C:0.13, G:0.16, T:0.44
Consensus pattern (33 bp):
TGTATCGATACAATACTTTGTGTATCGATACAT
Found at i:1416326 original size:39 final size:40
Alignment explanation
Indices: 1416251--1416331 Score: 103
Period size: 39 Copynumber: 2.0 Consensus size: 40
1416241 TTTTCTTTCT
**
1416251 CCCTTAACTAAAGTAATTTTAACAAATTTGTACATTCTCC
1 CCCTTAACTAAAGTAATTTTAACAAATTTACACATTCTCC
* *
1416291 CCCTTAA-T-AAGATAATTTTAGCAAATTTACGCATTCTCC
1 CCCTTAACTAAAG-TAATTTTAACAAATTTACACATTCTCC
1416330 CC
1 CC
1416332 TAAAAAATCT
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
38 3 0.08
39 26 0.72
40 7 0.19
ACGTcount: A:0.33, C:0.25, G:0.06, T:0.36
Consensus pattern (40 bp):
CCCTTAACTAAAGTAATTTTAACAAATTTACACATTCTCC
Found at i:1417723 original size:21 final size:20
Alignment explanation
Indices: 1417694--1417736 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
1417684 GACTAGTGTG
* *
1417694 GGGACTGCCCGGTTGTGACCT
1 GGGACTG-CCGGTCGCGACCT
*
1417715 GGGAGTGCCGGTCGCGACCT
1 GGGACTGCCGGTCGCGACCT
1417735 GG
1 GG
1417737 TGGTGCTGCC
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
20 13 0.68
21 6 0.32
ACGTcount: A:0.09, C:0.28, G:0.44, T:0.19
Consensus pattern (20 bp):
GGGACTGCCGGTCGCGACCT
Found at i:1418186 original size:13 final size:13
Alignment explanation
Indices: 1418168--1418218 Score: 93
Period size: 13 Copynumber: 3.9 Consensus size: 13
1418158 ATAATCCCCC
1418168 TGTATCGATACAT
1 TGTATCGATACAT
*
1418181 TGTATCGATACAG
1 TGTATCGATACAT
1418194 TGTATCGATACAT
1 TGTATCGATACAT
1418207 TGTATCGATACA
1 TGTATCGATACA
1418219 AAGAAAAAAG
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 36 1.00
ACGTcount: A:0.31, C:0.16, G:0.18, T:0.35
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1420318 original size:15 final size:15
Alignment explanation
Indices: 1420298--1420328 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
1420288 ATTTCGTTTG
*
1420298 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
1420313 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
1420328 G
1 G
1420329 GACATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Found at i:1424412 original size:13 final size:13
Alignment explanation
Indices: 1424394--1424419 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1424384 CAATTTTTTG
1424394 TGTATCGATACAT
1 TGTATCGATACAT
1424407 TGTATCGATACAT
1 TGTATCGATACAT
1424420 ACTTTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1424431 original size:32 final size:33
Alignment explanation
Indices: 1424374--1424437 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 33
1424364 TGCAAGCCAA
**
1424374 TGTATCGATACAATTTTTTGTGTATCGATACAT
1 TGTATCGATACAATACTTTGTGTATCGATACAT
1424407 TGTATCGATAC-ATACTTTGTGTATCGATACA
1 TGTATCGATACAATACTTTGTGTATCGATACA
1424438 AGTTTGGCTA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 18 0.62
33 11 0.38
ACGTcount: A:0.28, C:0.14, G:0.16, T:0.42
Consensus pattern (33 bp):
TGTATCGATACAATACTTTGTGTATCGATACAT
Found at i:1433010 original size:25 final size:24
Alignment explanation
Indices: 1432981--1433036 Score: 78
Period size: 25 Copynumber: 2.3 Consensus size: 24
1432971 CCTTCTTTTT
*
1432981 AAAAAAAAA-TAAAAACAAAAAAA
1 AAAAAAAAACAAAAAACAAAAAAA
*
1433004 AACAAAAAAACAAAAAACAAAAAAC
1 AA-AAAAAAACAAAAAACAAAAAAA
1433029 AAAAAAAA
1 AAAAAAAA
1433037 CAAGGAAAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
23 2 0.07
24 13 0.45
25 14 0.48
ACGTcount: A:0.89, C:0.09, G:0.00, T:0.02
Consensus pattern (24 bp):
AAAAAAAAACAAAAAACAAAAAAA
Found at i:1433037 original size:16 final size:16
Alignment explanation
Indices: 1432981--1433039 Score: 77
Period size: 15 Copynumber: 3.7 Consensus size: 16
1432971 CCTTCTTTTT
1432981 AAAAAAAA-ATAAAAAC
1 AAAAAAAACA-AAAAAC
1432997 AAAAAAAAACAAAAAA-
1 -AAAAAAAACAAAAAAC
*
1433013 ACAAAAAACAAAAAAC
1 AAAAAAAACAAAAAAC
1433029 AAAAAAAACAA
1 AAAAAAAACAA
1433040 GGAAAAAAGA
Statistics
Matches: 38, Mismatches: 2, Indels: 5
0.84 0.04 0.11
Matches are distributed among these distances:
15 14 0.37
16 10 0.26
17 13 0.34
18 1 0.03
ACGTcount: A:0.88, C:0.10, G:0.00, T:0.02
Consensus pattern (16 bp):
AAAAAAAACAAAAAAC
Found at i:1433047 original size:1 final size:1
Alignment explanation
Indices: 1432981--1433036 Score: 58
Period size: 1 Copynumber: 56.0 Consensus size: 1
1432971 CCTTCTTTTT
* * * * * *
1432981 AAAAAAAAATAAAAACAAAAAAAAACAAAAAAACAAAAAACAAAAAACAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1433037 CAAGGAAAAA
Statistics
Matches: 43, Mismatches: 12, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
1 43 1.00
ACGTcount: A:0.89, C:0.09, G:0.00, T:0.02
Consensus pattern (1 bp):
A
Found at i:1434227 original size:55 final size:54
Alignment explanation
Indices: 1434138--1434548 Score: 552
Period size: 55 Copynumber: 7.4 Consensus size: 54
1434128 TTCACCCTTT
1434138 AGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACTTTTC
1 AGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA-TTTTC
*
1434193 AGTCTTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCC
1 AGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCATTTT-C
*
1434248 AGTCCTCAAAGAGCAGGATGCCTTTCAAAGCCCACACAAGTTGGTGGCACTTTTC
1 AGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA-TTTTC
* * *
1434303 AGTCTTCAAAAAGCAGGATGCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCC
1 AGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCATTTT-C
* * *
1434358 AGTCCTCAAAGAGCATGACGCCTTTTAAAACCCACACAAGTTGGTGGCATTTTTC
1 AGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA-TTTTC
* * *
1434413 AGTCCTCAAAGAGCAGGATGCCTTTTAAAGCCTACACAAGTTGGTGGCATTTTCC
1 AGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCATTTT-C
** * *
1434468 AGTCCTCAAAGAGCAATATGCTTTCTCCTTTCAAAGCCCACACAAGTTGGTGGCACTTTC
1 AGTCCTCAAAGAGC---A-G--GACGCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTC
** *
1434528 AGTAATCAAGGAGCAGGACGC
1 AGTCCTCAAAGAGCAGGACGC
1434549 TCTCTACTTT
Statistics
Matches: 317, Mismatches: 28, Indels: 23
0.86 0.08 0.06
Matches are distributed among these distances:
54 14 0.04
55 249 0.79
56 9 0.03
57 1 0.00
58 1 0.00
59 1 0.00
60 12 0.04
61 30 0.09
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (54 bp):
AGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTC
Found at i:1434331 original size:110 final size:110
Alignment explanation
Indices: 1434138--1434545 Score: 611
Period size: 110 Copynumber: 3.7 Consensus size: 110
1434128 TTCACCCTTT
1434138 AGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCTTCAAA
1 AGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCTTCAAA
*
1434203 GAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCC
66 GAGCAGGATGCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCC
*
1434248 AGTCCTCAAAGAGCAGGATGCCTTTCAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCTTCAAA
1 AGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCTTCAAA
*
1434313 AAGCAGGATGCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCC
66 GAGCAGGATGCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCC
* * * * *
1434358 AGTCCTCAAAGAGCATGACGCCTTTTAAAACCCACACAAGTTGGTGGCATTTTTCAGTCCTCAAA
1 AGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCTTCAAA
* *
1434423 GAGCAGGATGCCTTTTAAAGCCTACACAAGTTGGTGGCATTTTCC
66 GAGCAGGATGCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCC
** * *
1434468 AGTCCTCAAAGAGCAATATGCTTTCTCCTTTCAAAGCCCACACAAGTTGGTGGCAC-TTTCAGTA
1 AGTCCTCAAAGAGC---A-G--GACGCCTTTCAAAGCCCACACAAGTTGGTGGCACTTTTCAGTC
* *
1434532 ATCAAGGAGCAGGA
60 TTCAAAGAGCAGGA
1434546 CGCTCTCTAC
Statistics
Matches: 270, Mismatches: 22, Indels: 7
0.90 0.07 0.02
Matches are distributed among these distances:
110 222 0.82
113 1 0.00
115 19 0.07
116 28 0.10
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (110 bp):
AGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCTTCAAA
GAGCAGGATGCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCC
Found at i:1434421 original size:165 final size:163
Alignment explanation
Indices: 1434138--1434820 Score: 695
Period size: 165 Copynumber: 4.1 Consensus size: 163
1434128 TTCACCCTTT
* *
1434138 AGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCTTCAAA
1 AGTCCTCAAAGAGCAGGATGCCTTTCAAAGCCCACACAAGTTGGTGGCAC-TTTCAGTCCTCAAA
*
1434203 GAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCAT-TTTCCAGTCCTCAAAGAGCAGGAT
65 GAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCATCTTT-CAGTCCTCAAAGAGCAGGAT
1434267 GCCTTTCAAAGCCCACACAAGTTGGTGGCACTTTTC
129 GCCTTTCAAAGCCCACACAAGTTGGTGGCA-TTTTC
* * *
1434303 AGTCTTCAAAAAGCAGGATGCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAA
1 AGTCCTCAAAGAGCAGGATGCCTTTCAAAGCCCACACAAGTTGGTGGCACTTT-CAGTCCTCAAA
* * *
1434368 GAGCATGACGCCTTTTAAAACCCACACAAGTTGGTGGCATTTTTCAGTCCTCAAAGAGCAGGATG
65 GAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCATCTTTCAGTCCTCAAAGAGCAGGATG
* *
1434433 CCTTTTAAAGCCTACACAAGTTGGTGGCATTTTCC
130 CCTTTCAAAGCCCACACAAGTTGGTGGCATTTT-C
** **
1434468 AGTCCTCAAAGAGCAATATGCTTTCTCCTTTCAAAGCCCACACAAGTTGGTGGCACTTTCAGTAA
1 AGTCCTCAAAGAGCAGGATG------CCTTTCAAAGCCCACACAAGTTGGTGGCACTTTCAGTCC
* * * *
1434533 TCAAGGAGCAGGACG-C---T----CTC-TAC---TT--T--CACCCTTT-AGTCCTCAAAGAGC
60 TCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCA-TCTTTCAGTCCTCAAAGAGC
* * *
1434581 AGGATACCTTTTAAAGCCCGCACAAGTTGGTGGCATTTTC
124 AGGATGCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTC
* * * *
1434621 TAGTCCTCAAAGAGCAAGATGCCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCCAATCCTCAA
1 -AGTCCTCAAAGAGCAGGATGCCTTTCAAAGCCCACACAAGTTGGTGGCACTT-TCAGTCCTCAA
* * *
1434686 AGAGCAGGAGGCCTTCTCCTTTTAAAGCCCACACAAGGTGGTGGCA-CCTTCTAGTCCTCAAAGA
64 AGAGCAGGA------CGCCTTTTAAAGCCCACACAAGTTGGTGGCATCTTTC-AGTCCTCAAAGA
*
1434750 GCAGGACGCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACCTTTT-
122 GCAGGATGC-----C-TTTCAAAGCCCACACAAGTTGGTGGCA--TTTTC
1434799 AGTCCTCAAAGAGCAGGATGCC
1 AGTCCTCAAAGAGCAGGATGCC
1434821 CCTTTTCTCC
Statistics
Matches: 431, Mismatches: 43, Indels: 76
0.78 0.08 0.14
Matches are distributed among these distances:
148 31 0.07
149 15 0.03
153 1 0.00
154 71 0.16
155 4 0.01
156 2 0.00
158 2 0.00
159 1 0.00
161 2 0.00
162 2 0.00
163 2 0.00
164 9 0.02
165 158 0.37
166 4 0.01
167 1 0.00
169 5 0.01
170 17 0.04
171 53 0.12
176 1 0.00
177 46 0.11
179 4 0.01
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.25
Consensus pattern (163 bp):
AGTCCTCAAAGAGCAGGATGCCTTTCAAAGCCCACACAAGTTGGTGGCACTTTCAGTCCTCAAAG
AGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCATCTTTCAGTCCTCAAAGAGCAGGATGC
CTTTCAAAGCCCACACAAGTTGGTGGCATTTTC
Found at i:1434744 original size:61 final size:58
Alignment explanation
Indices: 1434562--1434816 Score: 292
Period size: 61 Copynumber: 4.4 Consensus size: 58
1434552 CTACTTTCAC
* *
1434562 CCTT-TAGTCCTCAAAGAGCAGGA---TACCTTTTAAAGCCCGCACAAGTTGGTGGCA
1 CCTTCTAGTCCTCAAAGAGCAGGAGCTTTCCTTTTAAAGCCCACACAAGTTGGTGGCA
** * *
1434616 TTTTCTAGTCCTCAAAGAGCA--AG-ATGCCTTTTAAAGCCCACACAAGTTGGTGGCA
1 CCTTCTAGTCCTCAAAGAGCAGGAGCTTTCCTTTTAAAGCCCACACAAGTTGGTGGCA
* * *
1434671 -CTTCCCAATCCTCAAAGAGCAGGAGGCCTTCTCCTTTTAAAGCCCACACAAGGTGGTGGCA
1 CCTT-CTAGTCCTCAAAGAGCAGGA-G-CTT-TCCTTTTAAAGCCCACACAAGTTGGTGGCA
*
1434732 CCTTCTAGTCCTCAAAGAGCAGGACGCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCA
1 CCTTCTAGTCCTCAAAGAGCAGGA-GC-TTTCCTTTT-AAAGCCCACACAAGTTGGTGGCA
*
1434793 CCTTTTAGTCCTCAAAGAGCAGGA
1 CCTTCTAGTCCTCAAAGAGCAGGA
1434817 TGCCCCTTTT
Statistics
Matches: 172, Mismatches: 16, Indels: 19
0.83 0.08 0.09
Matches are distributed among these distances:
53 1 0.01
54 4 0.02
55 60 0.35
57 1 0.01
58 1 0.01
60 8 0.05
61 94 0.55
62 3 0.02
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (58 bp):
CCTTCTAGTCCTCAAAGAGCAGGAGCTTTCCTTTTAAAGCCCACACAAGTTGGTGGCA
Found at i:1434840 original size:122 final size:115
Alignment explanation
Indices: 1434587--1434821 Score: 283
Period size: 116 Copynumber: 2.0 Consensus size: 115
1434577 GAGCAGGATA
* * ** *
1434587 CCTTTTAAAGCCCGCACAAGTTGGTGGCATTTTCTAGTCCTCAAAGAGCAAGATGCCTTTTAAAG
1 CCTTTT-AAGCCCACACAAGGTGGTGGCACCTTCTAGTCCTCAAAGAGCAAGACGCCTTTTAAAG
*
1434652 CCCACACAAGTTGGTGGCACTTCCCAATCCTCAAAGAGCAGGAGGCCTTCT
65 CCCACACAAGTTGGTGGCACTTCCCAATCCTCAAAGAGCAGGAGCCCTTCT
*
1434703 CCTTTTAAAGCCCACACAAGGTGGTGGCACCTTCTAGTCCTCAAAGAGCAGGACGCTTTTTCTTT
1 CCTTTT-AAGCCCACACAAGGTGGTGGCACCTTCTAGTCCTCAAAGAGCAAGACGC-----CTTT
** *
1434768 TCAAAGCCCACACAAGTTGGTGGCACCTT-TTAGTCCTCAAAGAGCAGGATGCCC
60 T-AAAGCCCACACAAGTTGGTGGCA-CTTCCCAATCCTCAAAGAGCAGGA-GCCC
1434822 CTTTTCTCCT
Statistics
Matches: 101, Mismatches: 10, Indels: 9
0.84 0.08 0.08
Matches are distributed among these distances:
116 50 0.50
121 5 0.05
122 40 0.40
123 6 0.06
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (115 bp):
CCTTTTAAGCCCACACAAGGTGGTGGCACCTTCTAGTCCTCAAAGAGCAAGACGCCTTTTAAAGC
CCACACAAGTTGGTGGCACTTCCCAATCCTCAAAGAGCAGGAGCCCTTCT
Found at i:1435545 original size:20 final size:20
Alignment explanation
Indices: 1435519--1435573 Score: 92
Period size: 20 Copynumber: 2.8 Consensus size: 20
1435509 GTTCACCTAG
*
1435519 ATGTATCGATACATTTTGCA
1 ATGTATCGATACATTTTACA
*
1435539 TTGTATCGATACATTTTACA
1 ATGTATCGATACATTTTACA
1435559 ATGTATCGATACATT
1 ATGTATCGATACATT
1435574 CGGGTTTTTT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.31, C:0.15, G:0.13, T:0.42
Consensus pattern (20 bp):
ATGTATCGATACATTTTACA
Found at i:1437878 original size:48 final size:50
Alignment explanation
Indices: 1437815--1437932 Score: 159
Period size: 48 Copynumber: 2.4 Consensus size: 50
1437805 ATTTTTTATC
* * *
1437815 TCGGGGATACTCCAACCCTGGTTTTATTTCCAAAACATCAATTTTTC-T-
1 TCGGGGATACTCCAACCCCGGCTTTATTTCCAAAACATCAATTTCTCATA
* * *
1437863 TCGGGGATACTCCAACCCCGGCTTTATTTCTAAAATATTAATTTCTCATAA
1 TCGGGGATACTCCAACCCCGGCTTTATTTCCAAAACATCAATTTCTCAT-A
1437914 TCGGGGATACTCCAACCCC
1 TCGGGGATACTCCAACCCC
1437933 ATTATTTTCC
Statistics
Matches: 61, Mismatches: 6, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
48 41 0.67
49 1 0.02
51 19 0.31
ACGTcount: A:0.26, C:0.27, G:0.14, T:0.33
Consensus pattern (50 bp):
TCGGGGATACTCCAACCCCGGCTTTATTTCCAAAACATCAATTTCTCATA
Found at i:1437964 original size:79 final size:79
Alignment explanation
Indices: 1437865--1438173 Score: 386
Period size: 79 Copynumber: 3.9 Consensus size: 79
1437855 ATTTTTCTTC
*
1437865 GGGGATACTCCAACCCCGGCTTTATTTCTAAAATATTAATTTCTCATAATCGGGGATACTCCAAC
1 GGGGATACTCCAACCCCGGCTTTATTTCTAAAACATTAATTTCTCATAATCGGGGATACTCCAAC
*
1437930 CCCATTATTTTCCA
66 CCCATTATTTTCGA
* * * * * * *
1437944 CGGAATACTCTAACCTCGGCTTTATTTCTAAAATATTAATTTCTCGTAATCGGAGATACTCCAAC
1 GGGGATACTCCAACCCCGGCTTTATTTCTAAAACATTAATTTCTCATAATCGGGGATACTCCAAC
* * *
1438009 CTCGTCATTTTCGA
66 CCCATTATTTTCGA
** * *
1438023 GGGGATACTCCAACCCCGATTTTATTTCTAAAACATTAATTTTTCATAATTGGGGATACTCCAAC
1 GGGGATACTCCAACCCCGGCTTTATTTCTAAAACATTAATTTCTCATAATCGGGGATACTCCAAC
**
1438088 CCTGTTATTTTCGA
66 CCCATTATTTTCGA
* ** * *
1438102 GGGGATACTCCAACCCCGGTTTTATTTCTAAAACACCAA-TTCTCCACAATCGGGGATACTCTAA
1 GGGGATACTCCAACCCCGGCTTTATTTCTAAAACATTAATTTCT-CATAATCGGGGATACTCCAA
1438166 CTCCCATT
65 C-CCCATT
1438174 TTATTTTCAA
Statistics
Matches: 195, Mismatches: 33, Indels: 3
0.84 0.14 0.01
Matches are distributed among these distances:
78 3 0.02
79 188 0.96
80 4 0.02
ACGTcount: A:0.28, C:0.26, G:0.13, T:0.33
Consensus pattern (79 bp):
GGGGATACTCCAACCCCGGCTTTATTTCTAAAACATTAATTTCTCATAATCGGGGATACTCCAAC
CCCATTATTTTCGA
Found at i:1438178 original size:51 final size:51
Alignment explanation
Indices: 1438102--1438221 Score: 163
Period size: 51 Copynumber: 2.4 Consensus size: 51
1438092 TTATTTTCGA
*
1438102 GGGGATACTCCAACCCCGGTTTTA-TTTCTAAAACACCAATTCTCCACAATC
1 GGGGATACTCCAACCCCGATTTTATTTTC-AAAACACCAATTCTCCACAATC
* * * *
1438153 GGGGATACTCTAACTCCC-ATTTTATTTTCAAAACACTAATTTTTCACAATC
1 GGGGATACTCCAAC-CCCGATTTTATTTTCAAAACACCAATTCTCCACAATC
1438204 GGGGATACTCCAACCCCG
1 GGGGATACTCCAACCCCG
1438222 TTATTTCATC
Statistics
Matches: 60, Mismatches: 6, Indels: 6
0.83 0.08 0.08
Matches are distributed among these distances:
50 3 0.05
51 50 0.83
52 7 0.12
ACGTcount: A:0.29, C:0.29, G:0.12, T:0.29
Consensus pattern (51 bp):
GGGGATACTCCAACCCCGATTTTATTTTCAAAACACCAATTCTCCACAATC
Found at i:1438236 original size:158 final size:158
Alignment explanation
Indices: 1438074--1438407 Score: 390
Period size: 158 Copynumber: 2.1 Consensus size: 158
1438064 TTTCATAATT
* * *
1438074 GGGGATACTCCAACCCTGTTATTTTCGAGGGGATACTCCAACCCCGGTTTTATTTCTAAAACACC
1 GGGGATACTCCAACCCTGTTATTTCCGAGGGGATACTCCAACCCCGGCTTTATTTCCAAAACACC
* *** *
1438139 AA-TTCTCCACAATCGGGGATAC-TCTAACTCCC-ATTTTATTT-TCAAAACACTAATTTTTCAC
66 AATTTC-CCACAATCAGGGATACTTC-AAC-CCCGACCGTATTTCT-AAAACACTAATTTCTCAC
*
1438200 AATCGGGGATACTCCAACCCCGTTA-TTTCATC
127 AATCGGGGATACTCCAACCCCATTATTTTCA-C
* * * * * **
1438232 GGGGATATTCTAACCCCGTTATTTCCGAGGGGATACTCCAACCCTGGCTTTATTTCCAAAATATT
1 GGGGATACTCCAACCCTGTTATTTCCGAGGGGATACTCCAACCCCGGCTTTATTTCCAAAACACC
* * * * *
1438297 GATTTCCCACAATCAGGGATACTTCAACCCCGACCGTATTTCTAAAATATTGATTTCTCATAATC
66 AATTTCCCACAATCAGGGATACTTCAACCCCGACCGTATTTCTAAAACACTAATTTCTCACAATC
1438362 GGGGATACTCCAACCCCATTATTTTCAC
131 GGGGATACTCCAACCCCATTATTTTCAC
1438390 GGGGATACTCCAATCCCT
1 GGGGATACTCCAA-CCCT
1438408 ATTTTATTTT
Statistics
Matches: 146, Mismatches: 24, Indels: 11
0.81 0.13 0.06
Matches are distributed among these distances:
157 3 0.02
158 129 0.88
159 14 0.10
ACGTcount: A:0.27, C:0.28, G:0.14, T:0.31
Consensus pattern (158 bp):
GGGGATACTCCAACCCTGTTATTTCCGAGGGGATACTCCAACCCCGGCTTTATTTCCAAAACACC
AATTTCCCACAATCAGGGATACTTCAACCCCGACCGTATTTCTAAAACACTAATTTCTCACAATC
GGGGATACTCCAACCCCATTATTTTCAC
Found at i:1438237 original size:28 final size:28
Alignment explanation
Indices: 1438201--1438275 Score: 105
Period size: 28 Copynumber: 2.7 Consensus size: 28
1438191 ATTTTTCACA
1438201 ATCGGGGATACTCCAACCCCGTTATTTC
1 ATCGGGGATACTCCAACCCCGTTATTTC
* *
1438229 ATCGGGGATATTCTAACCCCGTTATTTC
1 ATCGGGGATACTCCAACCCCGTTATTTC
***
1438257 CGAGGGGATACTCCAACCC
1 ATCGGGGATACTCCAACCC
1438276 TGGCTTTATT
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 40 1.00
ACGTcount: A:0.23, C:0.31, G:0.20, T:0.27
Consensus pattern (28 bp):
ATCGGGGATACTCCAACCCCGTTATTTC
Found at i:1438337 original size:51 final size:51
Alignment explanation
Indices: 1438261--1438378 Score: 155
Period size: 51 Copynumber: 2.3 Consensus size: 51
1438251 TATTTCCGAG
* * **
1438261 GGGATACTCCAACCCTGGCTTTATTTCCAAAATATTGATTTCCCACAATCA
1 GGGATACTCCAACCCCGACCGTATTTCCAAAATATTGATTTCCCACAATCA
* * * * *
1438312 GGGATACTTCAACCCCGACCGTATTTCTAAAATATTGATTTCTCATAATCG
1 GGGATACTCCAACCCCGACCGTATTTCCAAAATATTGATTTCCCACAATCA
1438363 GGGATACTCCAACCCC
1 GGGATACTCCAACCCC
1438379 ATTATTTTCA
Statistics
Matches: 57, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
51 57 1.00
ACGTcount: A:0.29, C:0.28, G:0.14, T:0.30
Consensus pattern (51 bp):
GGGATACTCCAACCCCGACCGTATTTCCAAAATATTGATTTCCCACAATCA
Found at i:1438339 original size:288 final size:288
Alignment explanation
Indices: 1438024--1438542 Score: 672
Period size: 288 Copynumber: 1.8 Consensus size: 288
1438014 CATTTTCGAG
*** * *
1438024 GGGATACTCCAACCCCGATTTTATTTCTAAAACATTAATTTTTCATAATTGGGGATACTCCAACC
1 GGGATACTCCAACCCCGACCGTATTTCTAAAACATTAATTTCTCATAATCGGGGATACTCCAACC
** *
1438089 CTGTTATTTTCGA-GGGGATACTCCAACCCCGGTTTTATTTCTAAAACACCAATTCTCCACAATC
66 CCATTATTTTC-ACGGGGATACTCCAACCCCGATTTTATTTCTAAAACACCAATTCTCCACAATC
** *
1438153 GGGGATAC-TCTAACTCC-CATTTTATTT-TCAAAACA-CTAATTTTTCACAATCGGGGATACTC
130 GGGGATACTTC-AAC-CCTCACCTTATTTCT-AAAACATC-AATCTTTCACAATCGGGGATACTC
* * *
1438214 CAACCCCGTTATTTCAT-CGGGGATATTCTAACCCCGTTATTTCCGAGGGGATACTCCAACCCTG
191 CAACCCCGTTATTT-ATGAGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCTG
1438278 GCTTTATTTCCAAAATATTGATTTCCCACAATCA
255 GCTTTATTTCCAAAATATTGATTTCCCACAATCA
* * *
1438312 GGGATACTTCAACCCCGACCGTATTTCTAAAATATTGATTTCTCATAATCGGGGATACTCCAACC
1 GGGATACTCCAACCCCGACCGTATTTCTAAAACATTAATTTCTCATAATCGGGGATACTCCAACC
* * * ** * * *
1438377 CCATTATTTTCACGGGGATACTCCAATCCCTATTTTATTTTTAAAACACTGATTTTCTATAATCG
66 CCATTATTTTCACGGGGATACTCCAACCCCGATTTTATTTCTAAAACACCAATTCTCCACAATCG
* * *
1438442 GGGATACTTCAACCCTTACCTTATTTCTAAATCATCGATCTTTCACAATCGGGGATACTCCAACC
131 GGGATACTTCAACCCTCACCTTATTTCTAAAACATCAATCTTTCACAATCGGGGATACTCCAACC
* *
1438507 TCGTTATTTTTGAGGGGATACTCCAACCCCGTTATT
196 CCGTTATTTATGAGGGGATACTCCAACCCCGTTATT
1438543 ATCTCCAAAA
Statistics
Matches: 195, Mismatches: 30, Indels: 12
0.82 0.13 0.05
Matches are distributed among these distances:
287 4 0.02
288 187 0.96
289 4 0.02
ACGTcount: A:0.27, C:0.26, G:0.13, T:0.34
Consensus pattern (288 bp):
GGGATACTCCAACCCCGACCGTATTTCTAAAACATTAATTTCTCATAATCGGGGATACTCCAACC
CCATTATTTTCACGGGGATACTCCAACCCCGATTTTATTTCTAAAACACCAATTCTCCACAATCG
GGGATACTTCAACCCTCACCTTATTTCTAAAACATCAATCTTTCACAATCGGGGATACTCCAACC
CCGTTATTTATGAGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCTGGCTTTA
TTTCCAAAATATTGATTTCCCACAATCA
Found at i:1438466 original size:51 final size:50
Alignment explanation
Indices: 1438389--1438506 Score: 132
Period size: 51 Copynumber: 2.3 Consensus size: 50
1438379 ATTATTTTCA
** * *
1438389 CGGGGATACTCCAATCCCTATTTTATTTTTAAAACA-CTGAT-TTTCTATAAT
1 CGGGGATACTCCAA-CCCTACCTTATTTCTAAAACATC-GATCTTTC-ACAAT
* *
1438440 CGGGGATACTTCAACCCTTACCTTATTTCTAAATCATCGATCTTTCACAAT
1 CGGGGATACTCCAACCC-TACCTTATTTCTAAAACATCGATCTTTCACAAT
1438491 CGGGGATACTCCAACC
1 CGGGGATACTCCAACC
1438507 TCGTTATTTT
Statistics
Matches: 57, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
50 3 0.05
51 49 0.86
52 5 0.09
ACGTcount: A:0.28, C:0.25, G:0.12, T:0.35
Consensus pattern (50 bp):
CGGGGATACTCCAACCCTACCTTATTTCTAAAACATCGATCTTTCACAAT
Found at i:1438467 original size:130 final size:129
Alignment explanation
Indices: 1438229--1438535 Score: 350
Period size: 130 Copynumber: 2.4 Consensus size: 129
1438219 CCGTTATTTC
* * * * *
1438229 ATCGGGGATATTCTAACCCCGTTATTTCCGAGGGGATACTCCAACCCTGGCTTTATTTCCAAAAT
1 ATCGGGGATACTCCAACCCCGTTATTTTC-AGGGGATACTCCAACCCTGACTTTATTTCCAAAAC
* *
1438294 ATTGATTTCCCACAATCAGGGATACTTCAACCCCGACCGTATTTCTAAAAT-ATTGAT-TTCTCA
65 ACTGATTTCCCACAATCAGGGATACTTCAACCCCGACCGTATTTCT-AAATCATCGATCTT-TCA
*
1438357 TA
128 CA
* * **
1438359 ATCGGGGATACTCCAACCCCATTATTTTCACGGGGATACTCCAATCCCT-ATTTTATTTTTAAAA
1 ATCGGGGATACTCCAACCCCGTTATTTTCA-GGGGATACTCCAA-CCCTGACTTTATTTCCAAAA
* * * * ** *
1438423 CACTGATTTTCTATAATCGGGGATACTTCAACCCTTACCTTATTTCTAAATCATCGATCTTTCAC
64 CACTGATTTCCCACAATCAGGGATACTTCAACCCCGACCGTATTTCTAAATCATCGATCTTTCAC
1438488 A
129 A
* *
1438489 ATCGGGGATACTCCAACCTCGTTATTTTTGAGGGGATACTCCAACCC
1 ATCGGGGATACTCCAACCCCGTTA-TTTTCAGGGGATACTCCAACCC
1438536 CGTTATTATC
Statistics
Matches: 150, Mismatches: 22, Indels: 11
0.82 0.12 0.06
Matches are distributed among these distances:
129 8 0.05
130 131 0.87
131 11 0.07
ACGTcount: A:0.27, C:0.26, G:0.14, T:0.33
Consensus pattern (129 bp):
ATCGGGGATACTCCAACCCCGTTATTTTCAGGGGATACTCCAACCCTGACTTTATTTCCAAAACA
CTGATTTCCCACAATCAGGGATACTTCAACCCCGACCGTATTTCTAAATCATCGATCTTTCACA
Found at i:1440560 original size:20 final size:20
Alignment explanation
Indices: 1440535--1440591 Score: 105
Period size: 20 Copynumber: 2.9 Consensus size: 20
1440525 ATGTATCGAT
1440535 ACAATGTATCGATACAATGA
1 ACAATGTATCGATACAATGA
*
1440555 ACAATGTATTGATACAATGA
1 ACAATGTATCGATACAATGA
1440575 ACAATGTATCGATACAA
1 ACAATGTATCGATACAA
1440592 ATTGTGAAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 35 1.00
ACGTcount: A:0.46, C:0.14, G:0.14, T:0.26
Consensus pattern (20 bp):
ACAATGTATCGATACAATGA
Found at i:1440573 original size:13 final size:13
Alignment explanation
Indices: 1440524--1440553 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
1440514 GTAAACCCAG
1440524 AATGTATCGATAC
1 AATGTATCGATAC
1440537 AATGTATCGATAC
1 AATGTATCGATAC
1440550 AATG
1 AATG
1440554 AACAATGTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.40, C:0.13, G:0.17, T:0.30
Consensus pattern (13 bp):
AATGTATCGATAC
Found at i:1441103 original size:13 final size:13
Alignment explanation
Indices: 1441087--1441116 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
1441077 ATTCATTGTT
1441087 CATTGTATCGATA
1 CATTGTATCGATA
1441100 CATTGTATCGATA
1 CATTGTATCGATA
1441113 CATT
1 CATT
1441117 CTGGGTTTAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.30, C:0.17, G:0.13, T:0.40
Consensus pattern (13 bp):
CATTGTATCGATA
Found at i:1443394 original size:51 final size:51
Alignment explanation
Indices: 1443327--1443467 Score: 183
Period size: 51 Copynumber: 2.8 Consensus size: 51
1443317 CGGTTTCATG
** *
1443327 TCCAAAACATTAATTTTTCTTAATCGGGGATACTCCAACTCCAATTTTATT
1 TCCAAAACACCAATTTTTCATAATCGGGGATACTCCAACTCCAATTTTATT
* * * * * *
1443378 TCTAAAGCACCCATTTTCCATAATCGAGGATACTCCAACTCCGATTTTATT
1 TCCAAAACACCAATTTTTCATAATCGGGGATACTCCAACTCCAATTTTATT
* *
1443429 TCCAAAACACCAATTTTTCAAAATCAGGGATACTCCAAC
1 TCCAAAACACCAATTTTTCATAATCGGGGATACTCCAAC
1443468 CCTGTTATTT
Statistics
Matches: 74, Mismatches: 16, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
51 74 1.00
ACGTcount: A:0.33, C:0.26, G:0.09, T:0.33
Consensus pattern (51 bp):
TCCAAAACACCAATTTTTCATAATCGGGGATACTCCAACTCCAATTTTATT
Found at i:1443506 original size:79 final size:79
Alignment explanation
Indices: 1443405--1443633 Score: 262
Period size: 81 Copynumber: 2.9 Consensus size: 79
1443395 CCATAATCGA
* * *
1443405 GGATACTCCAACTCCGATTTTATTTCCAAAACACCAATTTTTCAAAATCAGGGATACTCCAACCC
1 GGATACTCCAACCCCGATTTTATTTCTAAAATACCAATTTTTCAAAATCAGGGATACTCCAACCC
1443470 TGTTATTTCCGAGG
66 TGTTATTTCCGAGG
** * ** * * ** *
1443484 GGATACTCCAACCCCGGCTTTATATCTAAAATATTGATTTTTTTCATAATTGGGGGTACTCCAAT
1 GGATACTCCAACCCCGATTTTATTTCTAAAATA-CCA-ATTTTTCAAAATCAGGGATACTCCAA-
** *
1443549 CCC-GCCATTTTCGAGG
63 CCCTGTTATTTCCGAGG
* *
1443565 GGATACTCCAACCCCGATTTTATTTCTAAAATACCAATTTTTCACAATCAGGGATACTCCAACTC
1 GGATACTCCAACCCCGATTTTATTTCTAAAATACCAATTTTTCAAAATCAGGGATACTCCAACCC
1443630 TGTT
66 TGTT
1443634 TTTTTTCCAA
Statistics
Matches: 117, Mismatches: 29, Indels: 8
0.76 0.19 0.05
Matches are distributed among these distances:
78 2 0.02
79 49 0.42
80 2 0.02
81 61 0.52
82 3 0.03
ACGTcount: A:0.28, C:0.25, G:0.14, T:0.33
Consensus pattern (79 bp):
GGATACTCCAACCCCGATTTTATTTCTAAAATACCAATTTTTCAAAATCAGGGATACTCCAACCC
TGTTATTTCCGAGG
Found at i:1443624 original size:51 final size:50
Alignment explanation
Indices: 1443564--1443683 Score: 159
Period size: 50 Copynumber: 2.4 Consensus size: 50
1443554 CATTTTCGAG
* * *
1443564 GGGATACTCCAACCCCGATTTTATTTCTAAAATACCAATTTTTCACAATCA
1 GGGATACTCCAACCCCG-TTTTATTTCCAAAACACCAATTTCTCACAATCA
* * * *
1443615 GGGATACTCCAACTCTGTTTTTTTTCCAAAACACCAATTTCTCACAATCG
1 GGGATACTCCAACCCCGTTTTATTTCCAAAACACCAATTTCTCACAATCA
*
1443665 GGGATACTCAAACCCCGTT
1 GGGATACTCCAACCCCGTT
1443684 ATTTTCACGA
Statistics
Matches: 59, Mismatches: 10, Indels: 1
0.84 0.14 0.01
Matches are distributed among these distances:
50 44 0.75
51 15 0.25
ACGTcount: A:0.30, C:0.28, G:0.11, T:0.32
Consensus pattern (50 bp):
GGGATACTCCAACCCCGTTTTATTTCCAAAACACCAATTTCTCACAATCA
Found at i:1443875 original size:79 final size:78
Alignment explanation
Indices: 1443615--1443882 Score: 333
Period size: 79 Copynumber: 3.4 Consensus size: 78
1443605 TTCACAATCA
* * * * * *
1443615 GGGATACTCCAACTCTGTTTTTTTTCCAAAACACCAATTTCTCACAATCGGGGATACTCAAACCC
1 GGGATACTCCAACCCTGTTTTATTTCCAAAACATCAATTTTTCACAATCGGGGATACTCCAACCT
1443680 CGTTATTTTC-ACG
66 CGTTATTTTCTA-G
* * * * * * * *
1443693 AGGACACTCCAACCCCGACTTTATTTCTAAAGCATCGATTTTCCACAATCGGGGATACTCCAACC
1 GGGATACTCCAACCCTG-TTTTATTTCCAAAACATCAATTTTTCACAATCGGGGATACTCCAACC
*
1443758 TCGTTATTTTTTAG
65 TCGTTATTTTCTAG
*
1443772 GGGATACTCCAACCCTGATTTTATTTCTAAAACATCAATTTTTCACAATCGGGGATACTCCAACC
1 GGGATACTCCAACCCTG-TTTTATTTCCAAAACATCAATTTTTCACAATCGGGGATACTCCAACC
1443837 TCGTTATTTTCTAG
65 TCGTTATTTTCTAG
1443851 GGGATACTCCAACCCCT-TTATTATTTCCAAAA
1 GGGATACTCCAA-CCCTGTT-TTATTTCCAAAA
1443883 TATTAAATTT
Statistics
Matches: 162, Mismatches: 24, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
78 15 0.09
79 142 0.88
80 5 0.03
ACGTcount: A:0.28, C:0.27, G:0.13, T:0.33
Consensus pattern (78 bp):
GGGATACTCCAACCCTGTTTTATTTCCAAAACATCAATTTTTCACAATCGGGGATACTCCAACCT
CGTTATTTTCTAG
Found at i:1459015 original size:10 final size:9
Alignment explanation
Indices: 1458997--1459076 Score: 99
Period size: 10 Copynumber: 8.6 Consensus size: 9
1458987 ATTCTTTTTC
1458997 AAAAAAACA
1 AAAAAAACA
1459006 AAAAACAACA
1 AAAAA-AACA
1459016 AAAAAAAC-
1 AAAAAAACA
1459024 AAAAAAACA
1 AAAAAAACA
1459033 AAACAAAACA
1 AAA-AAAACA
1459043 AAACAAAACA
1 AAA-AAAACA
1459053 AAACAAAACA
1 AAA-AAAACA
* *
1459063 AAACAAAGA
1 AAAAAAACA
1459072 AAAAA
1 AAAAA
1459077 GAGAGAAAAG
Statistics
Matches: 65, Mismatches: 3, Indels: 6
0.88 0.04 0.08
Matches are distributed among these distances:
8 8 0.12
9 19 0.29
10 38 0.58
ACGTcount: A:0.84, C:0.15, G:0.01, T:0.00
Consensus pattern (9 bp):
AAAAAAACA
Found at i:1459022 original size:20 final size:19
Alignment explanation
Indices: 1458997--1459076 Score: 92
Period size: 19 Copynumber: 4.2 Consensus size: 19
1458987 ATTCTTTTTC
1458997 AAAAAAACAAAAAACAAC-A
1 AAAAAAACAAAAAA-AACAA
1459016 AAAAAAAC-AAAAAAACAA
1 AAAAAAACAAAAAAAACAA
*
1459034 AACAAAACAAAACAAAACAA
1 AAAAAAACAAAA-AAAACAA
* * *
1459054 AACAAAACAAAACAAAGAA
1 AAAAAAACAAAAAAAACAA
1459073 AAAA
1 AAAA
1459077 GAGAGAAAAG
Statistics
Matches: 54, Mismatches: 4, Indels: 6
0.84 0.06 0.09
Matches are distributed among these distances:
17 3 0.06
18 13 0.24
19 19 0.35
20 19 0.35
ACGTcount: A:0.84, C:0.15, G:0.01, T:0.00
Consensus pattern (19 bp):
AAAAAAACAAAAAAAACAA
Found at i:1459088 original size:5 final size:5
Alignment explanation
Indices: 1459000--1459069 Score: 103
Period size: 5 Copynumber: 14.6 Consensus size: 5
1458990 CTTTTTCAAA
1459000 AAAAC AAAA- AACAAC AAAA- AAAAC -AAA- AAAAC AAAAC AAAAC AAAAC
1 AAAAC AAAAC AA-AAC AAAAC AAAAC AAAAC AAAAC AAAAC AAAAC AAAAC
1459047 AAAAC AAAAC AAAAC AAAAC AAA
1 AAAAC AAAAC AAAAC AAAAC AAA
1459070 GAAAAAAGAG
Statistics
Matches: 60, Mismatches: 0, Indels: 10
0.86 0.00 0.14
Matches are distributed among these distances:
4 12 0.20
5 46 0.77
6 2 0.03
ACGTcount: A:0.83, C:0.17, G:0.00, T:0.00
Consensus pattern (5 bp):
AAAAC
Found at i:1460178 original size:39 final size:39
Alignment explanation
Indices: 1460119--1460217 Score: 189
Period size: 39 Copynumber: 2.5 Consensus size: 39
1460109 GTTGGTGGCA
1460119 CCTTCTAGTCCTCAAAGAGCAGGATGCTCTCTCCTTTCAC
1 CCTT-TAGTCCTCAAAGAGCAGGATGCTCTCTCCTTTCAC
1460159 CCTTTAGTCCTCAAAGAGCAGGATGCTCTCTCCTTTCAC
1 CCTTTAGTCCTCAAAGAGCAGGATGCTCTCTCCTTTCAC
1460198 CCTTTAGTCCTCAAAGAGCA
1 CCTTTAGTCCTCAAAGAGCA
1460218 AGACGTCTTT
Statistics
Matches: 59, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
39 55 0.93
40 4 0.07
ACGTcount: A:0.22, C:0.33, G:0.15, T:0.29
Consensus pattern (39 bp):
CCTTTAGTCCTCAAAGAGCAGGATGCTCTCTCCTTTCAC
Found at i:1460268 original size:55 final size:55
Alignment explanation
Indices: 1460203--1460613 Score: 488
Period size: 55 Copynumber: 7.4 Consensus size: 55
1460193 TTCACCCTTT
* *
1460203 AGTCCTCAAAGAGCAAGACGTCTTTCAAAGCCCACACAAGTTGGTGTCACTTTTC
1 AGTCCTCAAAGAGCAAGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACTTTTC
* * *
1460258 AGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTTT
1 AGTCCTCAAAGAGCAAGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACTTTTC
1460313 AGTCCTCAAAGAGCAAGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA-TTTTCC
1 AGTCCTCAAAGAGCAAGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACTTTT-C
* * * *
1460368 AATCCTCAAAGAG-AAGATGCCTTTTAAAGCCCACACAAGTTGGTGGCATTTTTC
1 AGTCCTCAAAGAGCAAGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACTTTTC
* * * * * *
1460422 AGTCCTCAAAGAACAGGATGCTTTCTCCTTTCAAAGCCTACACAAGTTGGTGGCATTTTTT
1 AGTCCTCAAAGAGCA--A-G---ACGCCTTTCAAAGCCCACACAAGTTGGTGGCACTTTTC
* * * *
1460483 AGTCCTCAAAGGGTAGGACGCCTTTCAAAGCCCACACAAGTTGGTAGCACCTTTT-
1 AGTCCTCAAAGAGCAAGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA-CTTTTC
* ** **
1460538 AGTCCTCAAAGAGC-AGAACGCCTTTTAAAGCCCACACAAGTACGTGGCACTTCCC
1 AGTCCTCAAAGAGCAAG-ACGCCTTTCAAAGCCCACACAAGTTGGTGGCACTTTTC
*
1460593 AGTCCTCAAAGAGCAGGACGC
1 AGTCCTCAAAGAGCAAGACGC
1460614 TCTCTCATTT
Statistics
Matches: 306, Mismatches: 37, Indels: 26
0.83 0.10 0.07
Matches are distributed among these distances:
54 53 0.17
55 201 0.66
56 5 0.02
57 1 0.00
58 2 0.01
61 44 0.14
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (55 bp):
AGTCCTCAAAGAGCAAGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACTTTTC
Found at i:1460706 original size:61 final size:60
Alignment explanation
Indices: 1460632--1460770 Score: 172
Period size: 60 Copynumber: 2.3 Consensus size: 60
1460622 TTCGCCCTTT
*
1460632 AGTCCTCAAAAAGCAGGACGCCTTCTCC-TTTCAAAGCCCACACAAGTTGGTGGCACCTTCC
1 AGTCCTCAAAAAGCAGGACACCTT-TCCTTTTC-AAGCCCACACAAGTTGGTGGCACCTTCC
** * * * **
1460693 AGTCCTCAAAAAGCAAAACACCTTTCCTTTTCAAGCCTACACGAGTTGGTGGCACTTTTT
1 AGTCCTCAAAAAGCAGGACACCTTTCCTTTTCAAGCCCACACAAGTTGGTGGCACCTTCC
*
1460753 AGTCCTCAAAGAGCAGGA
1 AGTCCTCAAAAAGCAGGA
1460771 TGCACTTTAC
Statistics
Matches: 66, Mismatches: 11, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
60 41 0.62
61 25 0.38
ACGTcount: A:0.29, C:0.29, G:0.18, T:0.24
Consensus pattern (60 bp):
AGTCCTCAAAAAGCAGGACACCTTTCCTTTTCAAGCCCACACAAGTTGGTGGCACCTTCC
Found at i:1460806 original size:42 final size:41
Alignment explanation
Indices: 1460749--1460943 Score: 169
Period size: 42 Copynumber: 4.5 Consensus size: 41
1460739 TGGTGGCACT
**
1460749 TTTTAGTCCTCAAAGAGCAGGATGCACTTTACTTTCCTTTTTC
1 TTTT-GTCCTCAAAGAGCAGGACACACTTTA-TTTCCTTTTTC
* * * * * *
1460792 ATTTGTCCTTAAAGAGTAAGACACACTTCATTCCCTTATTTTCTC
1 TTTTGTCCTCAAAGAGCAGGACACACTTTATTTCC---TTTT-TC
*
1460837 TTTTGTCCTCAAAGAGCAGGACACACTTTATTTTCTTCTTTC
1 TTTTGTCCTCAAAGAGCAGGACACACTTTATTTCCTT-TTTC
* *
1460879 TTTTGTCCTCAAAGAGCAAGACACA-TTTCGTTTTCCTTTTTTC
1 TTTTGTCCTCAAAGAGCAGGACACACTTT--ATTTCC-TTTTTC
*
1460922 TTTTATCCTCGAAA-AGCAGGAC
1 TTTTGTCCTC-AAAGAGCAGGAC
1460944 GTACTCTTTT
Statistics
Matches: 123, Mismatches: 20, Indels: 18
0.76 0.12 0.11
Matches are distributed among these distances:
41 7 0.06
42 48 0.39
43 29 0.24
44 9 0.07
45 30 0.24
ACGTcount: A:0.24, C:0.24, G:0.12, T:0.41
Consensus pattern (41 bp):
TTTTGTCCTCAAAGAGCAGGACACACTTTATTTCCTTTTTC
Found at i:1460921 original size:87 final size:85
Alignment explanation
Indices: 1460749--1460943 Score: 225
Period size: 87 Copynumber: 2.3 Consensus size: 85
1460739 TGGTGGCACT
** * *
1460749 TTTTAGTCCTCAAAGAGCAGGATGCACTTTACTTTCCTTTTTCATTTGTCCTTAAAGAGTAAGAC
1 TTTT-GTCCTCAAAGAGCAGGACACACTTTACTTTCCTTTTTCATTTGTCCTCAAAGAGCAAGAC
1460814 ACACTTCATTCCCTTATTTTCTC
65 ACACTTCATTCCC-TATTTT-TC
* *
1460837 TTTTGTCCTCAAAGAGCAGGACACACTTTA-TTTTCTTCTTTCTTTTGTCCTCAAAGAGCAAGAC
1 TTTTGTCCTCAAAGAGCAGGACACACTTTACTTTCCTT-TTTCATTTGTCCTCAAAGAGCAAGAC
* * *
1460901 ACATTTCGTTTTCCT-TTTTTC
65 ACACTTC-ATTCCCTATTTTTC
*
1460922 TTTTATCCTCGAAA-AGCAGGAC
1 TTTTGTCCTC-AAAGAGCAGGAC
1460944 GTACTCTTTT
Statistics
Matches: 94, Mismatches: 10, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
85 19 0.20
86 13 0.14
87 54 0.57
88 8 0.09
ACGTcount: A:0.24, C:0.24, G:0.12, T:0.41
Consensus pattern (85 bp):
TTTTGTCCTCAAAGAGCAGGACACACTTTACTTTCCTTTTTCATTTGTCCTCAAAGAGCAAGACA
CACTTCATTCCCTATTTTTC
Found at i:1461723 original size:20 final size:20
Alignment explanation
Indices: 1461700--1461737 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
1461690 ATACATTTTG
1461700 CATTATATCAATACATTGCT
1 CATTATATCAATACATTGCT
* *
1461720 CATTGTATCGATACATTG
1 CATTATATCAATACATTG
1461738 TATCGATACA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.32, C:0.18, G:0.11, T:0.39
Consensus pattern (20 bp):
CATTATATCAATACATTGCT
Found at i:1461738 original size:13 final size:13
Alignment explanation
Indices: 1461720--1461748 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
1461710 ATACATTGCT
1461720 CATTGTATCGATA
1 CATTGTATCGATA
1461733 CATTGTATCGATA
1 CATTGTATCGATA
1461746 CAT
1 CAT
1461749 AGCTAATTGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.31, C:0.17, G:0.14, T:0.38
Consensus pattern (13 bp):
CATTGTATCGATA
Found at i:1461758 original size:33 final size:33
Alignment explanation
Indices: 1461700--1461769 Score: 95
Period size: 33 Copynumber: 2.1 Consensus size: 33
1461690 ATACATTTTG
* * *
1461700 CATTATATCAATACATTGCTCATTGTATCGATA
1 CATTATATCAATACATAGCTAATTGTATCAATA
* *
1461733 CATTGTATCGATACATAGCTAATTGTATCAATA
1 CATTATATCAATACATAGCTAATTGTATCAATA
1461766 CATT
1 CATT
1461770 TTACAATGTA
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.34, C:0.17, G:0.10, T:0.39
Consensus pattern (33 bp):
CATTATATCAATACATAGCTAATTGTATCAATA
Found at i:1464225 original size:50 final size:51
Alignment explanation
Indices: 1464069--1464245 Score: 173
Period size: 51 Copynumber: 3.5 Consensus size: 51
1464059 AAATTTCTGG
* * * * * * **
1464069 ATTTTTCAT-CTCATGGATACTCCAA-TCCCGGTTTCATGTCCAAAACATTA
1 ATTTTTCATAATCAGGGATACTCCAACTCCTGATTTTAT-TTCAAAACACCA
* * * *
1464119 ATTTTTCTTAATCGGGGATACTCCAACTCCTGATTTTATTTCTAAAGCACCC
1 ATTTTTCATAATCAGGGATACTCCAACTCCTGATTTTATTTC-AAAACACCA
*
1464171 ATTTTCCATAATC-GGGATACTCCAACT-CTGATTTTATTTTCAAAACACCA
1 ATTTTTCATAATCAGGGATACTCCAACTCCTGATTTTA-TTTCAAAACACCA
*
1464221 ATTTTTCACAATCAGGGATACTCCA
1 ATTTTTCATAATCAGGGATACTCCA
1464246 GCCCCGTTAT
Statistics
Matches: 104, Mismatches: 18, Indels: 9
0.79 0.14 0.07
Matches are distributed among these distances:
50 35 0.34
51 44 0.42
52 25 0.24
ACGTcount: A:0.29, C:0.25, G:0.10, T:0.36
Consensus pattern (51 bp):
ATTTTTCATAATCAGGGATACTCCAACTCCTGATTTTATTTCAAAACACCA
Found at i:1464430 original size:51 final size:51
Alignment explanation
Indices: 1464374--1464489 Score: 171
Period size: 51 Copynumber: 2.3 Consensus size: 51
1464364 TTTTTGAGGA
* * *
1464374 GATACTCCAACCCTGATTTTATTTCTAAAATACCAATTTTTCAC-AATCGGG
1 GATACTCCAACCC-GATTTTATTTCCAAAACACCAATTTCTCACAAATCGGG
*
1464425 GATACTTCAACTCCGATTTTATTTCCAAAACACCAATTTCTCACAAATCGGG
1 GATACTCCAAC-CCGATTTTATTTCCAAAACACCAATTTCTCACAAATCGGG
1464477 GATACTCCAACCC
1 GATACTCCAACCC
1464490 CGTTATTTTC
Statistics
Matches: 58, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
51 39 0.67
52 19 0.33
ACGTcount: A:0.32, C:0.28, G:0.09, T:0.31
Consensus pattern (51 bp):
GATACTCCAACCCGATTTTATTTCCAAAACACCAATTTCTCACAAATCGGG
Found at i:1464570 original size:79 final size:79
Alignment explanation
Indices: 1464423--1464677 Score: 325
Period size: 79 Copynumber: 3.2 Consensus size: 79
1464413 TTCACAATCG
* * ** * *
1464423 GGGATACTTCAACTCCGATTTTATTTCCAAAACACCAA-TTTCTCACAAATCGGGGATACTCCAA
1 GGGATACTCCAACCCCGACCTTATTTCTAAAACATCAATTTTC-CAC-AATCGGGGATACTCCAA
*
1464487 CCCCGTTATTTTC-ACG
64 CCCCGTTATTTTCGA-A
* * * *
1464503 GGGATACTCTAACCCCGGCCTTATTTCTAAAGCATCGATTTTCCACAATCGGGGATACTCCAACC
1 GGGATACTCCAACCCCGACCTTATTTCTAAAACATCAATTTTCCACAATCGGGGATACTCCAACC
1464568 CCGTTATTTTCGAA
66 CCGTTATTTTCGAA
* ** * *
1464582 GGGATACTCCAACCCCAATTTTATTTCTAAAACATCAATTTTTCACAATCGGAGATACTCCAACC
1 GGGATACTCCAACCCCGACCTTATTTCTAAAACATCAATTTTCCACAATCGGGGATACTCCAACC
1464647 CCGTTATTTTCGAA
66 CCGTTATTTTCGAA
1464661 GGGATACTCCAACCCCG
1 GGGATACTCCAACCCCG
1464678 TTATTATCTC
Statistics
Matches: 152, Mismatches: 21, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
79 116 0.76
80 32 0.21
81 4 0.03
ACGTcount: A:0.28, C:0.29, G:0.14, T:0.29
Consensus pattern (79 bp):
GGGATACTCCAACCCCGACCTTATTTCTAAAACATCAATTTTCCACAATCGGGGATACTCCAACC
CCGTTATTTTCGAA
Found at i:1464593 original size:238 final size:238
Alignment explanation
Indices: 1464135--1464574 Score: 625
Period size: 238 Copynumber: 1.8 Consensus size: 238
1464125 CTTAATCGGG
* * * *
1464135 GATACTCCAACTCCTGATTTTATTTCTAAAGCACCCATTTTCCATAATCGGGATACTCCAACTCT
1 GATACTCCAACTCCTGATTTTATTTCTAAAACACCAATTTTCCACAATCGGGATACTCCAACTCC
* * *
1464200 GATTTTATTTTCAAAACACCAATTTTTCACAATCAGGGATACTCCAGCCCCGTTATTTTCGAGGG
66 GATTTTATTTCCAAAACACCAATTTCTCACAATCAGGGATACTCCAACCCCGTTATTTTCGAGGG
* * * * * * *
1464265 GATACTCCAACCCCGGCTTTATATCTAAAATATTGATTTTTTTCATAATCGGGGGTACTTCAACC
131 GATACTCCAACCCCGGCCTTATATCTAAAACATCGA-TTTTTCCACAATCGGGGATACTCCAACC
*
1464330 CCGTTATGTCATCGGAGATACTCCAATCCCACTATTTTTGAGGA
195 CCGTTATGTCATCGGAGATACTCCAACCCCACTATTTTTGAGGA
* * *
1464374 GATACTCCAAC-CCTGATTTTATTTCTAAAATACCAATTTTTCACAATCGGGGATACTTCAACTC
1 GATACTCCAACTCCTGATTTTATTTCTAAAACACCAATTTTCCACAATC-GGGATACTCCAACTC
*
1464438 CGATTTTATTTCCAAAACACCAATTTCTCACAAATCGGGGATACTCCAACCCCGTTATTTTC-AC
65 CGATTTTATTTCCAAAACACCAATTTCTCAC-AATCAGGGATACTCCAACCCCGTTATTTTCGA-
* * *
1464502 GGGGATACTCTAACCCCGGCCTTATTTCTAAAGCATCGA-TTTTCCACAATCGGGGATACTCCAA
128 GGGGATACTCCAACCCCGGCCTTATATCTAAAACATCGATTTTTCCACAATCGGGGATACTCCAA
1464566 CCCCGTTAT
193 CCCCGTTAT
1464575 TTTCGAAGGG
Statistics
Matches: 177, Mismatches: 21, Indels: 7
0.86 0.10 0.03
Matches are distributed among these distances:
238 62 0.35
239 54 0.31
240 61 0.34
ACGTcount: A:0.28, C:0.27, G:0.13, T:0.33
Consensus pattern (238 bp):
GATACTCCAACTCCTGATTTTATTTCTAAAACACCAATTTTCCACAATCGGGATACTCCAACTCC
GATTTTATTTCCAAAACACCAATTTCTCACAATCAGGGATACTCCAACCCCGTTATTTTCGAGGG
GATACTCCAACCCCGGCCTTATATCTAAAACATCGATTTTTCCACAATCGGGGATACTCCAACCC
CGTTATGTCATCGGAGATACTCCAACCCCACTATTTTTGAGGA
Done.