Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold310
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103541
ACGTcount: A:0.34, C:0.16, G:0.15, T:0.35
Found at i:5910 original size:79 final size:79
Alignment explanation
Indices: 5821--5975 Score: 247
Period size: 79 Copynumber: 2.0 Consensus size: 79
5811 AAGTAAGAGA
* * *
5821 TTGAAAAGTATTCTAGATAAACACTTTTAGAACTAAAAATAAAGATTTGATGAGAAAAATCTAAA
1 TTGAAAAGTATTCTAAATAAACACTTCTAGAACTAAAAACAAAGATTTGATGAGAAAAATCTAAA
5886 ACCTTAGAGTAGTT
66 ACCTTAGAGTAGTT
* * * *
5900 TTGAAGAGTATTCTAAATAGACACTTCTAGAACTAAAAACAAAGATTTGATGAGAAAATTCTATA
1 TTGAAAAGTATTCTAAATAAACACTTCTAGAACTAAAAACAAAGATTTGATGAGAAAAATCTAAA
5965 ACCTTAGAGTA
66 ACCTTAGAGTA
5976 TTTGTTGATA
Statistics
Matches: 69, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
79 69 1.00
ACGTcount: A:0.46, C:0.10, G:0.14, T:0.30
Consensus pattern (79 bp):
TTGAAAAGTATTCTAAATAAACACTTCTAGAACTAAAAACAAAGATTTGATGAGAAAAATCTAAA
ACCTTAGAGTAGTT
Found at i:11769 original size:18 final size:18
Alignment explanation
Indices: 11748--11782 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
11738 CAAGAAAACC
11748 ATTTTTTTTATCAAAAAT
1 ATTTTTTTTATCAAAAAT
*
11766 ATTTTTTTTATGAAAAA
1 ATTTTTTTTATCAAAAA
11783 ATCCATGAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.40, C:0.03, G:0.03, T:0.54
Consensus pattern (18 bp):
ATTTTTTTTATCAAAAAT
Found at i:13876 original size:29 final size:28
Alignment explanation
Indices: 13812--13880 Score: 77
Period size: 28 Copynumber: 2.4 Consensus size: 28
13802 AAATTAGATT
* * *
13812 TATTTGATATTTTTTATAATTTATTATA
1 TATTTTATATTTATTATAATTTATCATA
*
13840 TAATTTATATTTATT-TAATTTAATCATCA
1 TATTTTATATTTATTATAATTT-ATCAT-A
13869 TATTTTATATTT
1 TATTTTATATTT
13881 TATTCACGTA
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
27 6 0.18
28 16 0.47
29 12 0.35
ACGTcount: A:0.33, C:0.03, G:0.01, T:0.62
Consensus pattern (28 bp):
TATTTTATATTTATTATAATTTATCATA
Found at i:13914 original size:21 final size:19
Alignment explanation
Indices: 13889--13931 Score: 52
Period size: 19 Copynumber: 2.2 Consensus size: 19
13879 TTTATTCACG
13889 TAAATCAAATATATAAAAT-TT
1 TAAAT-AAA-ATA-AAAATATT
13910 TAAATAAAATAAAAATATT
1 TAAATAAAATAAAAATATT
13929 TAA
1 TAA
13932 TTATTTATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
18 5 0.24
19 8 0.38
20 3 0.14
21 5 0.24
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (19 bp):
TAAATAAAATAAAAATATT
Found at i:13994 original size:28 final size:29
Alignment explanation
Indices: 13949--14013 Score: 69
Period size: 28 Copynumber: 2.3 Consensus size: 29
13939 TTTTATGTAA
** * * *
13949 AAAAATATTTTATTTTTAAAT-ATGTATT
1 AAAAATATAATATCTTTAAATAATATAAT
*
13977 AAAAATATAATATCTTTAACTAATATAAT
1 AAAAATATAATATCTTTAAATAATATAAT
14006 AAAAATAT
1 AAAAATAT
14014 TAAACCATTT
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
28 17 0.57
29 13 0.43
ACGTcount: A:0.52, C:0.03, G:0.02, T:0.43
Consensus pattern (29 bp):
AAAAATATAATATCTTTAAATAATATAAT
Found at i:14236 original size:19 final size:19
Alignment explanation
Indices: 14214--14251 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
14204 ATAAAACCAA
14214 AAAAAAAAAAGGAAAAAAG
1 AAAAAAAAAAGGAAAAAAG
* *
14233 AAAAAAAGAATGAAAAAAG
1 AAAAAAAAAAGGAAAAAAG
14252 CCATCCATCT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.82, C:0.00, G:0.16, T:0.03
Consensus pattern (19 bp):
AAAAAAAAAAGGAAAAAAG
Found at i:14586 original size:16 final size:17
Alignment explanation
Indices: 14559--14668 Score: 71
Period size: 16 Copynumber: 6.8 Consensus size: 17
14549 AAACTGAATT
*
14559 TTTAATAATTTTATTTA
1 TTTAATAATTTTATATA
14576 TTTAA-AATTTTATATA
1 TTTAATAATTTTATATA
*
14592 TTT-AT-A---T-CATA
1 TTTAATAATTTTATATA
14603 TTT-ATATATTTTAT-TA
1 TTTAATA-ATTTTATATA
14619 TATTAA-AATTTTATATA
1 T-TTAATAATTTTATATA
14636 TTTATATAAATTTTA-ATA
1 TTTA-AT-AATTTTATATA
*
14654 TATTAATAAATTTAT
1 T-TTAATAATTTTAT
14669 TACATTCTTA
Statistics
Matches: 74, Mismatches: 4, Indels: 29
0.69 0.04 0.27
Matches are distributed among these distances:
11 8 0.11
12 1 0.01
13 1 0.01
15 2 0.03
16 27 0.36
17 18 0.24
18 7 0.09
19 10 0.14
ACGTcount: A:0.41, C:0.01, G:0.00, T:0.58
Consensus pattern (17 bp):
TTTAATAATTTTATATA
Found at i:14595 original size:8 final size:8
Alignment explanation
Indices: 14584--14643 Score: 50
Period size: 8 Copynumber: 7.0 Consensus size: 8
14574 TATTTAAAAT
14584 TTTATATA
1 TTTATATA
14592 TTTATATCATA
1 -TT-TAT-ATA
14603 TTTATATA
1 TTTATATA
14611 TTTTATTATA
1 -TTTA-TATA
* *
14621 TTAAAAT-
1 TTTATATA
14628 TTTATATA
1 TTTATATA
14636 TTTATATA
1 TTTATATA
14644 AATTTTAATA
Statistics
Matches: 42, Mismatches: 4, Indels: 11
0.74 0.07 0.19
Matches are distributed among these distances:
7 5 0.12
8 13 0.31
9 12 0.29
10 9 0.21
11 3 0.07
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (8 bp):
TTTATATA
Found at i:14595 original size:20 final size:20
Alignment explanation
Indices: 14570--14657 Score: 88
Period size: 20 Copynumber: 4.2 Consensus size: 20
14560 TTAATAATTT
*
14570 TATTTATTTAAAATTTTATA
1 TATTTATATAAAATTTTATA
* *
14590 TATTTATATCATATTTATATA
1 TATTTATATAAAATTT-TATA
*
14611 TTTTATTATATTAAAATTTTATA
1 -TAT-TTATA-TAAAATTTTATA
14634 TATTTATAT-AAATTTTAATA
1 TATTTATATAAAATTTT-ATA
14654 TATT
1 TATT
14658 AATAAATTTA
Statistics
Matches: 56, Mismatches: 7, Indels: 10
0.77 0.10 0.14
Matches are distributed among these distances:
19 7 0.12
20 21 0.38
21 9 0.16
22 4 0.07
23 9 0.16
24 6 0.11
ACGTcount: A:0.40, C:0.01, G:0.00, T:0.59
Consensus pattern (20 bp):
TATTTATATAAAATTTTATA
Found at i:14656 original size:35 final size:35
Alignment explanation
Indices: 14591--14668 Score: 97
Period size: 35 Copynumber: 2.2 Consensus size: 35
14581 AATTTTATAT
*
14591 ATTTATATCATATTTATATATTTTATTATATTAA-A
1 ATTT-TATCATATTTATATATTTTAATATATTAATA
14626 ATTTTAT-ATATTTATATAAATTTTAATATATTAATA
1 ATTTTATCATATTTATAT--ATTTTAATATATTAATA
*
14662 AATTTAT
1 ATTTTAT
14669 TACATTCTTA
Statistics
Matches: 38, Mismatches: 2, Indels: 5
0.84 0.04 0.11
Matches are distributed among these distances:
33 10 0.26
34 3 0.08
35 18 0.47
36 7 0.18
ACGTcount: A:0.42, C:0.01, G:0.00, T:0.56
Consensus pattern (35 bp):
ATTTTATCATATTTATATATTTTAATATATTAATA
Found at i:14662 original size:18 final size:18
Alignment explanation
Indices: 14600--14666 Score: 68
Period size: 18 Copynumber: 3.8 Consensus size: 18
14590 TATTTATATC
* * *
14600 ATATTTATATATTTTATT
1 ATATTAATAAATTTTAAT
14618 ATATT-A-AAATTTT-AT
1 ATATTAATAAATTTTAAT
14633 ATATTTATATAAATTTTAAT
1 ATA-TTA-ATAAATTTTAAT
14653 ATATTAATAAATTT
1 ATATTAATAAATTT
14667 ATTACATTCT
Statistics
Matches: 42, Mismatches: 2, Indels: 10
0.78 0.04 0.19
Matches are distributed among these distances:
15 4 0.10
16 8 0.19
17 1 0.02
18 14 0.33
19 10 0.24
20 5 0.12
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (18 bp):
ATATTAATAAATTTTAAT
Found at i:14813 original size:5 final size:5
Alignment explanation
Indices: 14803--14835 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
14793 CGTTTCCCCC
*
14803 TTTAT TTTAT TTTAT TTTAT TTTGT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTT
14836 TCTGTTTAAG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.15, C:0.00, G:0.03, T:0.82
Consensus pattern (5 bp):
TTTAT
Found at i:16462 original size:17 final size:16
Alignment explanation
Indices: 16440--16479 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
16430 AATGTTTTAT
16440 TTTCTTTGTTCTTTTC
1 TTTCTTTGTTCTTTTC
* *
16456 TTCTCTTTTTTGTTTTC
1 TT-TCTTTGTTCTTTTC
16473 TTTCTTT
1 TTTCTTT
16480 TTCACAGGCA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
16 7 0.33
17 14 0.67
ACGTcount: A:0.00, C:0.17, G:0.05, T:0.78
Consensus pattern (16 bp):
TTTCTTTGTTCTTTTC
Found at i:20233 original size:121 final size:121
Alignment explanation
Indices: 20019--20263 Score: 454
Period size: 121 Copynumber: 2.0 Consensus size: 121
20009 ATTGATCTTC
20019 ATCCAGACAGCATGGCAGGTTCATTCTCTCTATGAGTTTATAAATTTTATGGCCACTGCGCAAGC
1 ATCCAGACAGCATGGCAGGTTCATTCTCTCTATGAGTTTATAAATTTTATGGCCACTGCGCAAGC
* * *
20084 TGCGACCTGACTAAAGGAATTAATTTCGCCTAATAGTATAATGTAGCATTTAGAGA
66 TGAGACCTCACTAAAGGAATTAATTTCGCCTAATAGTATAATGTAGCATGTAGAGA
*
20140 ATCCAGACAGCATGGCAGGTTCATTCTCTCTATGAGTTTATAAATTTTATGGCCACTGTGCAAGC
1 ATCCAGACAGCATGGCAGGTTCATTCTCTCTATGAGTTTATAAATTTTATGGCCACTGCGCAAGC
20205 TGAGACCTCACTAAAGGAATTAATTTCGCCTAATAGTATAATGTAGCATGTAGAGA
66 TGAGACCTCACTAAAGGAATTAATTTCGCCTAATAGTATAATGTAGCATGTAGAGA
20261 ATC
1 ATC
20264 AAATTAACTG
Statistics
Matches: 120, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
121 120 1.00
ACGTcount: A:0.31, C:0.19, G:0.20, T:0.31
Consensus pattern (121 bp):
ATCCAGACAGCATGGCAGGTTCATTCTCTCTATGAGTTTATAAATTTTATGGCCACTGCGCAAGC
TGAGACCTCACTAAAGGAATTAATTTCGCCTAATAGTATAATGTAGCATGTAGAGA
Found at i:20865 original size:12 final size:12
Alignment explanation
Indices: 20848--20884 Score: 74
Period size: 12 Copynumber: 3.1 Consensus size: 12
20838 ATATAATATA
20848 TGCTGTTGCTAT
1 TGCTGTTGCTAT
20860 TGCTGTTGCTAT
1 TGCTGTTGCTAT
20872 TGCTGTTGCTAT
1 TGCTGTTGCTAT
20884 T
1 T
20885 TTAGAAGGAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.08, C:0.16, G:0.24, T:0.51
Consensus pattern (12 bp):
TGCTGTTGCTAT
Found at i:22007 original size:14 final size:14
Alignment explanation
Indices: 21985--22022 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
21975 GGTAGACTTA
*
21985 TTAATCATTATTGG
1 TTAAACATTATTGG
21999 TTAAACATTATTGG
1 TTAAACATTATTGG
*
22013 TTAAAGATTA
1 TTAAACATTA
22023 GAAAGAGAGA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.37, C:0.05, G:0.13, T:0.45
Consensus pattern (14 bp):
TTAAACATTATTGG
Found at i:25960 original size:27 final size:28
Alignment explanation
Indices: 25914--25969 Score: 80
Period size: 27 Copynumber: 2.0 Consensus size: 28
25904 AATTTAATAT
*
25914 ATTTTAATATATATACTAT-ATTACAAA
1 ATTTTAATATATATACTATAATTAAAAA
25941 ATTTTAATATATATTA-TATAATTAAAAA
1 ATTTTAATATATA-TACTATAATTAAAAA
25969 A
1 A
25970 ATAAATTAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
27 16 0.62
28 10 0.38
ACGTcount: A:0.52, C:0.04, G:0.00, T:0.45
Consensus pattern (28 bp):
ATTTTAATATATATACTATAATTAAAAA
Found at i:29372 original size:370 final size:359
Alignment explanation
Indices: 28637--29413 Score: 886
Period size: 370 Copynumber: 2.1 Consensus size: 359
28627 CAATTAGGTT
* * *
28637 TTTTTTTTA-CATTTGAGCTATAAATATAGGATTCGTTATAATAAATAAGAACCATTTGAAGCTG
1 TTTTTTTTATCATTTGAGCTATAAATTTAAGATTCGTCATAATAAATAAGAACCATTTGAAGCTG
*
28701 TTATAATTAAGTATTATAAAAATAAATAAAAATTACATGTTTAAAAAAATTAAAATAAAATATAT
66 TTATAATTAAGTATTATAAAAATAAATAAAAATTACATGTTTAAAAAAAATAAAATAAAATATAT
* * * * ** * *
28766 GCTTATAGTGCTTAAAAAATAAATTAAGTTTTGATTTGTGAGGGATTTAATTTAATATTTCAAGT
131 GCTTATAATGCGTAAAAAATAAATTAAGTTTTGACTTATGAGAAATTTAATTCAATATTTCAAAT
* * * * ** *
28831 AAAATTCCTCTAATTATTTGGAAACCTAATTTCTCTCGAGCACCTTGCTCTTACTTGTAACAAGT
196 AAAATTCCACCAATTATTTGAAAACCTAATTTCTCTCAAGCACCTTGCTCTTACTAATAACAACT
* * *
28896 TAATGGCATAATTTCATTTTTCTTCTACCTTTCTCAATTTTTGGGTTAGAATTTGATAACAAAAA
261 TAATGGCATAATTTCATTTTTCTTCTACCTTTCTCAATTTTTAGGTGAGAATTTGATAAAAAAAA
* **
28961 ATTAAAACTCCATATATAAACATGCATCAATTAG
326 ATTAAAACTCCATATATAAACATACATCAACCAG
* *
28995 TTTTTTTTATATTATTTGAGCTATAAATTTAAGATTCGTCATAATAGATAAGAACCATTTGAAGC
1 -TTTTTTT-TATCATTTGAGCTATAAATTTAAGATTCGTCATAATAAATAAGAACCATTTGAAGC
* * * *
29060 TAG-TATAATTATGTATTATAAAAATAAATAGAATTTGCATGTTTAAAAAAAAGAAAAATAAAAT
64 T-GTTATAATTAAGTATTATAAAAATAAATAAAAATTACATGTTT-----AAA-AAAAATAAAAT
*
29124 ATAAGCATATATGCTTATAATGCGTAATAAATAAATTAAGTTTTGACTTATGAGAAATTTAATTC
122 A-AA--ATATATGCTTATAATGCGTAAAAAATAAATTAAGTTTTGACTTATGAGAAATTTAATTC
* * * * ** * * **
29189 AATGTTTCAAATAAAATTTCACCCATTA-TTGAAAACTTGGTTTCTCTCAAGTATCTTTTTCTTA
184 AATATTTCAAATAAAATTCCACCAATTATTTGAAAACCTAATTTCTCTCAAGCACCTTGCTCTTA
* *
29253 -TAAATAACAACTTAATAGGTATAATTTC-TTCTTTCTTCTACTTTTCTCAA-TTTTAGGTGAGA
249 CT-AATAACAACTTAAT-GGCATAATTTCATT-TTTCTTCTACCTTTCTCAATTTTTAGGTGAGA
** * * *
29315 ATTTGATAATAAAAAAAATTAAAACTTTACT-TCTAAATATATATCAACCAG
311 ATTTGAT-A-AAAAAAAATTAAAACTCCA-TATATAAACATACATCAACCAG
*
29366 -TTTTTTTATCATTTGAGCTATAAATTTAAGATTTGTCATAATAAATAA
1 TTTTTTTTATCATTTGAGCTATAAATTTAAGATTCGTCATAATAAATAA
29414 TTATGTATTA
Statistics
Matches: 348, Mismatches: 52, Indels: 27
0.81 0.12 0.06
Matches are distributed among these distances:
359 7 0.02
360 2 0.01
361 86 0.25
362 1 0.00
366 3 0.01
367 11 0.03
368 42 0.12
369 63 0.18
370 102 0.29
371 30 0.09
372 1 0.00
ACGTcount: A:0.40, C:0.10, G:0.10, T:0.40
Consensus pattern (359 bp):
TTTTTTTTATCATTTGAGCTATAAATTTAAGATTCGTCATAATAAATAAGAACCATTTGAAGCTG
TTATAATTAAGTATTATAAAAATAAATAAAAATTACATGTTTAAAAAAAATAAAATAAAATATAT
GCTTATAATGCGTAAAAAATAAATTAAGTTTTGACTTATGAGAAATTTAATTCAATATTTCAAAT
AAAATTCCACCAATTATTTGAAAACCTAATTTCTCTCAAGCACCTTGCTCTTACTAATAACAACT
TAATGGCATAATTTCATTTTTCTTCTACCTTTCTCAATTTTTAGGTGAGAATTTGATAAAAAAAA
ATTAAAACTCCATATATAAACATACATCAACCAG
Found at i:31264 original size:24 final size:24
Alignment explanation
Indices: 31236--31281 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
31226 AATAAAAATT
31236 AGCCACCAATTTTGACAAACAACA
1 AGCCACCAATTTTGACAAACAACA
* *
31260 AGCCACCATTTTTTACAAACAA
1 AGCCACCAATTTTGACAAACAA
31282 AAATAACTAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.43, C:0.28, G:0.07, T:0.22
Consensus pattern (24 bp):
AGCCACCAATTTTGACAAACAACA
Found at i:31303 original size:26 final size:26
Alignment explanation
Indices: 31238--31332 Score: 72
Period size: 28 Copynumber: 3.7 Consensus size: 26
31228 TAAAAATTAG
* *
31238 CCACCA-ATTTTGACAAAC-AA-CAAG
1 CCACCATA-TTTGACAAACAAAGAAAA
* *
31262 CCACCATTTTTTACAAACAAA-AATAA
1 CCACCATATTTGACAAACAAAGAA-AA
* *
31288 CTACCATATTTGACAAATACAAAGGAAA
1 CCACCATATTTGAC-AA-ACAAAGAAAA
31316 CCACCATATTTGACAAA
1 CCACCATATTTGACAAA
31333 TACAAAGGGT
Statistics
Matches: 56, Mismatches: 9, Indels: 10
0.75 0.12 0.13
Matches are distributed among these distances:
24 15 0.27
25 3 0.05
26 13 0.23
27 4 0.07
28 20 0.36
29 1 0.02
ACGTcount: A:0.47, C:0.24, G:0.06, T:0.22
Consensus pattern (26 bp):
CCACCATATTTGACAAACAAAGAAAA
Found at i:35452 original size:21 final size:21
Alignment explanation
Indices: 35426--35474 Score: 89
Period size: 21 Copynumber: 2.3 Consensus size: 21
35416 CCAAATGGGT
35426 GCTGATGAAGATGTTGATGCA
1 GCTGATGAAGATGTTGATGCA
*
35447 GCTGATGAAGATGTTGATGTA
1 GCTGATGAAGATGTTGATGCA
35468 GCTGATG
1 GCTGATG
35475 TCAAACTCAT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.27, C:0.08, G:0.35, T:0.31
Consensus pattern (21 bp):
GCTGATGAAGATGTTGATGCA
Found at i:35901 original size:26 final size:27
Alignment explanation
Indices: 35860--35934 Score: 100
Period size: 27 Copynumber: 2.8 Consensus size: 27
35850 AAACAGTAAG
* *
35860 CCACCATTTTTTACAAATA-AA-AATAA
1 CCACCATATTTGACAAATACAAGAA-AA
*
35886 CCACCATATTTGACAAATACAAGGAAA
1 CCACCATATTTGACAAATACAAGAAAA
35913 CCACCATATTTGACAAATACAA
1 CCACCATATTTGACAAATACAA
35935 AGGGTGACAT
Statistics
Matches: 44, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
26 17 0.39
27 26 0.59
28 1 0.02
ACGTcount: A:0.48, C:0.23, G:0.05, T:0.24
Consensus pattern (27 bp):
CCACCATATTTGACAAATACAAGAAAA
Found at i:37049 original size:23 final size:24
Alignment explanation
Indices: 37004--37049 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 24
36994 ACAAAGAAGG
**
37004 AGAATCTTCAAGCTGTTGGTGGTT
1 AGAATCTTCAAGCTGTTAATGGTT
*
37028 AGAAT-TTCAAGCTTTTAATGGT
1 AGAATCTTCAAGCTGTTAATGGT
37050 AAGATATATA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
23 14 0.74
24 5 0.26
ACGTcount: A:0.26, C:0.11, G:0.24, T:0.39
Consensus pattern (24 bp):
AGAATCTTCAAGCTGTTAATGGTT
Found at i:39691 original size:19 final size:18
Alignment explanation
Indices: 39656--39691 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
39646 TTTAAAAAAT
*
39656 AAAAATATTTAATTTATG
1 AAAAATATTTAAATTATG
39674 AAAAATATTTATAATTAT
1 AAAAATATTTA-AATTAT
39692 TATACAATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 11 0.69
19 5 0.31
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.44
Consensus pattern (18 bp):
AAAAATATTTAAATTATG
Found at i:39878 original size:29 final size:29
Alignment explanation
Indices: 39831--39904 Score: 73
Period size: 28 Copynumber: 2.6 Consensus size: 29
39821 TTATTATATT
*
39831 TATAATA-ATTAATCATAAAAATAAAAAC-
1 TATAATATATT-ATTATAAAAATAAAAACG
* * *
39859 TATTATATACTTATTAT-AAAATATACACG
1 TATAATATA-TTATTATAAAAATAAAAACG
39888 TATAATATATTATTATA
1 TATAATATATTATTATA
39905 CTTATTCCAC
Statistics
Matches: 37, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
28 22 0.59
29 13 0.35
30 2 0.05
ACGTcount: A:0.53, C:0.07, G:0.01, T:0.39
Consensus pattern (29 bp):
TATAATATATTATTATAAAAATAAAAACG
Found at i:41143 original size:21 final size:21
Alignment explanation
Indices: 41092--41143 Score: 86
Period size: 21 Copynumber: 2.5 Consensus size: 21
41082 AGTTACAAGT
* *
41092 TTTGGCTATAAATAGCTTAAG
1 TTTGGCAATTAATAGCTTAAG
41113 TTTGGCAATTAATAGCTTAAG
1 TTTGGCAATTAATAGCTTAAG
41134 TTTGGCAATT
1 TTTGGCAATT
41144 TGTATTTCAC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.40
Consensus pattern (21 bp):
TTTGGCAATTAATAGCTTAAG
Found at i:42737 original size:2 final size:2
Alignment explanation
Indices: 42730--42781 Score: 104
Period size: 2 Copynumber: 26.0 Consensus size: 2
42720 AAATCTGATG
42730 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
42772 AT AT AT AT AT
1 AT AT AT AT AT
42782 GCACCTAAAC
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 50 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:43990 original size:14 final size:13
Alignment explanation
Indices: 43959--43994 Score: 54
Period size: 13 Copynumber: 2.7 Consensus size: 13
43949 TTTAAAAGTA
*
43959 AAAAAAAATTGAT
1 AAAACAAATTGAT
43972 AAAACAAATTGAT
1 AAAACAAATTGAT
43985 ACAAACAAAT
1 A-AAACAAAT
43995 AAAATTTGAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
13 13 0.62
14 8 0.38
ACGTcount: A:0.67, C:0.08, G:0.06, T:0.19
Consensus pattern (13 bp):
AAAACAAATTGAT
Found at i:44475 original size:14 final size:14
Alignment explanation
Indices: 44456--44483 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
44446 AATAAATTTA
44456 TAATATAATTTTTT
1 TAATATAATTTTTT
44470 TAATATAATTTTTT
1 TAATATAATTTTTT
44484 ATTAAATTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (14 bp):
TAATATAATTTTTT
Found at i:44488 original size:16 final size:15
Alignment explanation
Indices: 44452--44488 Score: 51
Period size: 14 Copynumber: 2.5 Consensus size: 15
44442 TATAAATAAA
44452 TTTA-TAATATAATT
1 TTTATTAATATAATT
44466 TTT-TTAATATAATTT
1 TTTATTAATATAA-TT
44481 TTTATTAA
1 TTTATTAA
44489 ATTAATTTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
14 11 0.55
15 5 0.25
16 4 0.20
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (15 bp):
TTTATTAATATAATT
Found at i:44537 original size:18 final size:19
Alignment explanation
Indices: 44516--44577 Score: 74
Period size: 18 Copynumber: 3.3 Consensus size: 19
44506 AATATTTTCA
44516 TTATTATAATATA-TAATT
1 TTATTATAATATATTAATT
*
44534 TTATTATCATAATAATTAATT
1 TTATTATAAT-AT-ATTAATT
*
44555 TTATTATTAT-TATTAATT
1 TTATTATAATATATTAATT
44573 TTATT
1 TTATT
44578 GTGATTAATT
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
18 21 0.54
19 3 0.08
20 1 0.03
21 14 0.36
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.60
Consensus pattern (19 bp):
TTATTATAATATATTAATT
Found at i:44539 original size:21 final size:21
Alignment explanation
Indices: 44509--44577 Score: 83
Period size: 21 Copynumber: 3.4 Consensus size: 21
44499 TACAGATAAT
44509 ATTTTCATTATTATAATATATA
1 ATTTT-ATTATTATAATATATA
*
44531 ATTTTATTATCATAATA-ATTA
1 ATTTTATTATTATAATATA-TA
44552 ATTTTATTATTAT--TAT-TA
1 ATTTTATTATTATAATATATA
44570 ATTTTATT
1 ATTTTATT
44578 GTGATTAATT
Statistics
Matches: 43, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
18 10 0.23
19 2 0.05
20 1 0.02
21 25 0.58
22 5 0.12
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.59
Consensus pattern (21 bp):
ATTTTATTATTATAATATATA
Found at i:44539 original size:39 final size:39
Alignment explanation
Indices: 44470--44577 Score: 104
Period size: 39 Copynumber: 2.8 Consensus size: 39
44460 ATAATTTTTT
* *
44470 TAATATAATTTT-TTATTA-AATTAA-TTTATTA-CA-GA
1 TAAT-TAATTTTATTATTATTATTAATTTTATTATCATAA
44505 TAA-T-ATTTTCATTATTATAATATATAATTTTATTATCATAA
1 TAATTAATTTT-ATTATTAT--TAT-TAATTTTATTATCATAA
44546 TAATTAATTTTATTATTATTATTAATTTTATT
1 TAATTAATTTTATTATTATTATTAATTTTATT
44578 GTGATTAATT
Statistics
Matches: 60, Mismatches: 2, Indels: 18
0.75 0.03 0.22
Matches are distributed among these distances:
32 5 0.08
33 1 0.02
34 6 0.10
35 3 0.05
37 2 0.03
38 3 0.05
39 17 0.28
40 5 0.08
41 4 0.07
42 9 0.15
43 5 0.08
ACGTcount: A:0.40, C:0.03, G:0.01, T:0.56
Consensus pattern (39 bp):
TAATTAATTTTATTATTATTATTAATTTTATTATCATAA
Found at i:44576 original size:15 final size:15
Alignment explanation
Indices: 44558--44591 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
44548 ATTAATTTTA
*
44558 TTATTATTATTAATT
1 TTATTATGATTAATT
*
44573 TTATTGTGATTAATT
1 TTATTATGATTAATT
44588 TTAT
1 TTAT
44592 CATCTTTTCA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.29, C:0.00, G:0.06, T:0.65
Consensus pattern (15 bp):
TTATTATGATTAATT
Found at i:44584 original size:18 final size:18
Alignment explanation
Indices: 44516--44584 Score: 59
Period size: 18 Copynumber: 3.7 Consensus size: 18
44506 AATATTTTCA
*
44516 TTATTAT-AATATATAATT
1 TTATTATGATTAT-TAATT
*
44534 TTATTATCATAATAATTAATT
1 TTATTATGAT--T-ATTAATT
*
44555 TTATTATTATTATTAATT
1 TTATTATGATTATTAATT
*
44573 TTATTGTGATTA
1 TTATTATGATTA
44585 ATTTTATCAT
Statistics
Matches: 43, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
18 24 0.56
19 2 0.05
21 15 0.35
22 2 0.05
ACGTcount: A:0.38, C:0.01, G:0.03, T:0.58
Consensus pattern (18 bp):
TTATTATGATTATTAATT
Found at i:44878 original size:67 final size:66
Alignment explanation
Indices: 44640--45577 Score: 1275
Period size: 67 Copynumber: 14.3 Consensus size: 66
44630 TGAAAACCAA
*
44640 AAAAAAAATTGTATACGTGTTTTAGGGCTAAT--CACAAGTTTTGTTTGTTTCCACTGAAGTCAA
1 AAAAAAAATTGTATACGTGTTTTAGGGCTAATCACACAAGTTTTG-TTGTTTCCACCGAAGTCAA
44703 AT
65 AT
* * *
44705 --AAAAAATTGTGTACGTATTTTAGGGCTAATCACACAAGTTTTGTATGTTTCCACCGAAATCAA
1 AAAAAAAATTGTATACGTGTTTTAGGGCTAATCACACAAGTTTTGT-TGTTTCCACCGAAGTCAA
44768 AT
65 AT
* *
44770 --AAAAAATTGTGTACGTGTTTTAGGGCTAATCACACAAGTTTTGTATGTTTCCACCCAAGTCAA
1 AAAAAAAATTGTATACGTGTTTTAGGGCTAATCACACAAGTTTTGT-TGTTTCCACCGAAGTCAA
*
44833 AC
65 AT
44835 AAAAAAAATTGTATACGTGTTTTAGGGCTAATCACACAAGTTTTGTATGTTTCCACCGAAGTCAA
1 AAAAAAAATTGTATACGTGTTTTAGGGCTAATCACACAAGTTTTGT-TGTTTCCACCGAAGTCAA
44900 AT
65 AT
* * * * *
44902 AAAAAAAATTATATACGTGTTTTAGGGCTAATCACGCAAGTTTTGCTTGTTGCAACCAAAGTCAA
1 AAAAAAAATTGTATACGTGTTTTAGGGCTAATCACACAAGTTTTG-TTGTTTCCACCGAAGTCAA
44967 AT
65 AT
* *
44969 AAAAAAAATTGTATACATGTTTTAGGGCTAATCACACAAGTTTTGTATGTTTCTACCGAAGTCAA
1 AAAAAAAATTGTATACGTGTTTTAGGGCTAATCACACAAGTTTTGT-TGTTTCCACCGAAGTCAA
45034 AT
65 AT
* * * * *
45036 -AAAAAAATTTTATACGTGTTTTAGGGCTAATCACACAAATTTTGCTTGTTGCAACCAAAGTCAA
1 AAAAAAAATTGTATACGTGTTTTAGGGCTAATCACACAAGTTTTG-TTGTTTCCACCGAAGTCAA
45100 AT
65 AT
* * *
45102 -AAAAAAATTCTATACGTGTTTTAGGGCTAATCACACAAGTTTTATTTGTTTCCACCAAAGTCAA
1 AAAAAAAATTGTATACGTGTTTTAGGGCTAATCACACAAGTTTT-GTTGTTTCCACCGAAGTCAA
45166 AT
65 AT
*
45168 TAAAAAAATTGTATACGTGTTTTAGGGCTAATCACACAAGTTTTGCTTGTTTCCACCGAAGTCAA
1 AAAAAAAATTGTATACGTGTTTTAGGGCTAATCACACAAGTTTTG-TTGTTTCCACCGAAGTCAA
45233 AT
65 AT
*
45235 AAAAAAAATTATATACGTGTTTTAGGGCTAATCACACAAGTTTTGCTTGTTTCCACCGAAGTCAA
1 AAAAAAAATTGTATACGTGTTTTAGGGCTAATCACACAAGTTTTG-TTGTTTCCACCGAAGTCAA
45300 AT
65 AT
*
45302 AAAAAAAATTATATACGTGTTTTAGGGCTAATCACACAAGTTTTGCTTGTTTCCACCGAAGTCAA
1 AAAAAAAATTGTATACGTGTTTTAGGGCTAATCACACAAGTTTTG-TTGTTTCCACCGAAGTCAA
45367 AT
65 AT
* * * *
45369 AAAAAAAATTGTATACGTGTTTTAGGGCTAATCACACAAATTTTGCTTGTTGCAACCAAAGTCAA
1 AAAAAAAATTGTATACGTGTTTTAGGGCTAATCACACAAGTTTTG-TTGTTTCCACCGAAGTCAA
45434 AT
65 AT
* * * * * *
45436 -AAAAATATTGTATACGTATTTTAGGACTAATCACAAAAGTTTTGTTTGTTTCCATCAAAGTCAA
1 AAAAAAAATTGTATACGTGTTTTAGGGCTAATCACACAAGTTTTG-TTGTTTCCACCGAAGTCAA
45500 AT
65 AT
* *
45502 -AAAAAAATGTATATAC--G----A-GGCTAAT--CACAAGTTTTGTTTGTTTCCACCAAAGTCA
1 AAAAAAAAT-TGTATACGTGTTTTAGGGCTAATCACACAAGTTTTG-TTGTTTCCACCGAAGTCA
45557 AAT
64 AAT
45560 AAAAAAAATTGTATACGT
1 AAAAAAAATTGTATACGT
45578 AAATCTTGAA
Statistics
Matches: 799, Mismatches: 59, Indels: 35
0.89 0.07 0.04
Matches are distributed among these distances:
58 37 0.05
59 8 0.01
60 6 0.01
61 1 0.00
63 28 0.04
64 1 0.00
65 90 0.11
66 183 0.23
67 444 0.56
68 1 0.00
ACGTcount: A:0.37, C:0.15, G:0.15, T:0.33
Consensus pattern (66 bp):
AAAAAAAATTGTATACGTGTTTTAGGGCTAATCACACAAGTTTTGTTGTTTCCACCGAAGTCAAA
T
Found at i:45376 original size:400 final size:400
Alignment explanation
Indices: 44637--45577 Score: 1409
Period size: 400 Copynumber: 2.4 Consensus size: 400
44627 TGATGAAAAC
* **
44637 CAAA-AAAAAAATTGTATACGTGTTTTAGGGCTAAT--CACAAGTTTTGTTTGTTTCCACTGAAG
1 CAAATAAAAAAATTGTATACGTGTTTTAGGGCTAATCACACAAATTTTGTTTGTTTCCACCAAAG
* * * *
44699 TCAAAT-AAAAAATTGTGTACGTATTTTAGGGCTAATCACACAAGTTTTGTATGTTTCCACCGAA
66 TCAAATAAAAAAATTATATACGTGTTTTAGGGCTAATCACACAAGTTTTGTTTGTTTCCACC-AA
*
44763 A-TCAAA-T-AAAAAATTGTGTACGTGTTTTAGGGCTAATCACACAAGTTTTGTATGTTTCCACC
130 AGTCAAATTAAAAAAATTGTATACGTGTTTTAGGGCTAATCACACAAGTTTTGTATGTTTCCACC
*
44825 CAAGTCAAACAAAAAAAATTGTATACGTGTTTTAGGGCTAATCACACAAGTTTTGTATGTTTCCA
195 CAAGTCAAACAAAAAAAATTATATACGTGTTTTAGGGCTAATCACACAAGTTTTGTATGTTTCCA
*
44890 CCGAAGTCAAATAAAAAAAATTATATACGTGTTTTAGGGCTAATCACGCAAGTTTTGCTTGTTGC
260 CCGAAGTCAAATAAAAAAAATTATATACGTGTTTTAGGGCTAATCACACAAGTTTTGCTTGTTGC
*
44955 AACCAAAGTCAAATAAAAAAAATTGTATACATGTTTTAGGGCTAATCACACAAGTTTTG-TATGT
325 AACCAAAGTCAAATAAAAAAAATTGTATACATGTTTTAGGGCTAATCACACAAATTTTGCT-TGT
* * *
45019 TTCTACCGAAGT
389 TGCAACCAAAGT
* * * *
45031 CAAATAAAAAAATTTTATACGTGTTTTAGGGCTAATCACACAAATTTTGCTTGTTGCAACCAAAG
1 CAAATAAAAAAATTGTATACGTGTTTTAGGGCTAATCACACAAATTTTGTTTGTTTCCACCAAAG
* *
45096 TCAAATAAAAAAATTCTATACGTGTTTTAGGGCTAATCACACAAGTTTTATTTGTTTCCACCAAA
66 TCAAATAAAAAAATTATATACGTGTTTTAGGGCTAATCACACAAGTTTTGTTTGTTTCCACCAAA
45161 GTCAAATTAAAAAAATTGTATACGTGTTTTAGGGCTAATCACACAAGTTTTGCT-TGTTTCCACC
131 GTCAAATTAAAAAAATTGTATACGTGTTTTAGGGCTAATCACACAAGTTTTG-TATGTTTCCACC
* *
45225 GAAGTCAAATAAAAAAAATTATATACGTGTTTTAGGGCTAATCACACAAGTTTTGCT-TGTTTCC
195 CAAGTCAAACAAAAAAAATTATATACGTGTTTTAGGGCTAATCACACAAGTTTTG-TATGTTTCC
*
45289 ACCGAAGTCAAATAAAAAAAATTATATACGTGTTTTAGGGCTAATCACACAAGTTTTGCTTGTTT
259 ACCGAAGTCAAATAAAAAAAATTATATACGTGTTTTAGGGCTAATCACACAAGTTTTGCTTGTTG
* * *
45354 CCACCGAAGTCAAATAAAAAAAATTGTATACGTGTTTTAGGGCTAATCACACAAATTTTGCTTGT
324 CAACCAAAGTCAAATAAAAAAAATTGTATACATGTTTTAGGGCTAATCACACAAATTTTGCTTGT
45419 TGCAACCAAAGT
389 TGCAACCAAAGT
* * * *
45431 CAAATAAAAATATTGTATACGTATTTTAGGACTAATCACA-AAAGTTTTGTTTGTTTCCATCAAA
1 CAAATAAAAAAATTGTATACGTGTTTTAGGGCTAATCACACAAA-TTTTGTTTGTTTCCACCAAA
45495 GTCAAATAAAAAAATGTATATAC--G----A-GGCTAAT--CACAAGTTTTGTTTGTTTCCACCA
65 GTCAAATAAAAAAAT-TATATACGTGTTTTAGGGCTAATCACACAAGTTTTGTTTGTTTCCACCA
*
45551 AAGTCAAATAAAAAAAATTGTATACGT
129 AAGTCAAATTAAAAAAATTGTATACGT
45578 AAATCTTGAA
Statistics
Matches: 499, Mismatches: 36, Indels: 26
0.89 0.06 0.05
Matches are distributed among these distances:
392 49 0.10
394 11 0.02
395 31 0.06
397 30 0.06
398 55 0.11
399 5 0.01
400 309 0.62
401 9 0.02
ACGTcount: A:0.37, C:0.15, G:0.15, T:0.33
Consensus pattern (400 bp):
CAAATAAAAAAATTGTATACGTGTTTTAGGGCTAATCACACAAATTTTGTTTGTTTCCACCAAAG
TCAAATAAAAAAATTATATACGTGTTTTAGGGCTAATCACACAAGTTTTGTTTGTTTCCACCAAA
GTCAAATTAAAAAAATTGTATACGTGTTTTAGGGCTAATCACACAAGTTTTGTATGTTTCCACCC
AAGTCAAACAAAAAAAATTATATACGTGTTTTAGGGCTAATCACACAAGTTTTGTATGTTTCCAC
CGAAGTCAAATAAAAAAAATTATATACGTGTTTTAGGGCTAATCACACAAGTTTTGCTTGTTGCA
ACCAAAGTCAAATAAAAAAAATTGTATACATGTTTTAGGGCTAATCACACAAATTTTGCTTGTTG
CAACCAAAGT
Found at i:45576 original size:58 final size:59
Alignment explanation
Indices: 45327--45566 Score: 214
Period size: 66 Copynumber: 3.8 Consensus size: 59
45317 CGTGTTTTAG
* * *
45327 GGCTAATCACACAAGTTTTGCTTGTTTCCACCGAAGTCAAATAAAAAAAAT-TGTATACGTGTTT
1 GGCTAATCACA-AAGTTTTGTTTGTTTCCACCAAAGTCAAAT-AAAAAAATGTATATAC--G---
45391 TA
59 -A
* * * * * **
45393 GGGCTAATCACACAAATTTTGCTTGTTGCAACCAAAGTCAAATAAAAATATTGTATACGTATTTT
1 -GGCTAATCACA-AAGTTTTGTTTGTTTCCACCAAAGTCAAATAAAAA-AATGTATA--TA--CG
45458 A
59 A
*
45459 GGACTAATCACAAAAGTTTTGTTTGTTTCCATCAAAGTCAAATAAAAAAATGTATATACGA
1 GG-CTAATCAC-AAAGTTTTGTTTGTTTCCACCAAAGTCAAATAAAAAAATGTATATACGA
45520 GGCTAATCAC-AAGTTTTGTTTGTTTCCACCAAAGTCAAATAAAAAAA
1 GGCTAATCACAAAGTTTTGTTTGTTTCCACCAAAGTCAAATAAAAAAA
45567 ATTGTATACG
Statistics
Matches: 148, Mismatches: 17, Indels: 25
0.78 0.09 0.13
Matches are distributed among these distances:
58 36 0.24
60 8 0.05
61 3 0.02
63 2 0.01
65 9 0.06
66 44 0.30
67 41 0.28
68 3 0.02
70 2 0.01
ACGTcount: A:0.39, C:0.15, G:0.14, T:0.32
Consensus pattern (59 bp):
GGCTAATCACAAAGTTTTGTTTGTTTCCACCAAAGTCAAATAAAAAAATGTATATACGA
Found at i:46676 original size:11 final size:12
Alignment explanation
Indices: 46636--46690 Score: 60
Period size: 11 Copynumber: 4.6 Consensus size: 12
46626 TATTTAATAA
46636 AAATAATATATT
1 AAATAATATATT
*
46648 AAATAAAAATATT
1 AAAT-AATATATT
46661 AAAATAATA-ATT
1 -AAATAATATATT
46673 AAATAATAT-TT
1 AAATAATATATT
*
46684 AATTAAT
1 AAATAAT
46691 CTTACACATT
Statistics
Matches: 37, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
11 16 0.43
12 7 0.19
13 10 0.27
14 4 0.11
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (12 bp):
AAATAATATATT
Found at i:47564 original size:25 final size:25
Alignment explanation
Indices: 47517--47564 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
47507 AAATATTAAT
*
47517 TATTTAATTATTATTTTATATTTTA
1 TATTTAATTATTATTTTAAATTTTA
*
47542 TATTTAATT-TTTTTATTAAATTT
1 TATTTAATTATTATT-TTAAATTT
47565 AGGAAAAAGT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 4 0.20
25 16 0.80
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (25 bp):
TATTTAATTATTATTTTAAATTTTA
Found at i:48256 original size:14 final size:14
Alignment explanation
Indices: 48225--48255 Score: 55
Period size: 13 Copynumber: 2.3 Consensus size: 14
48215 TATTTACAAA
48225 TTTTAATATATTAT
1 TTTTAATATATTAT
48239 TTTTAAT-TATTAT
1 TTTTAATATATTAT
48252 TTTT
1 TTTT
48256 TTATATAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.59
14 7 0.41
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (14 bp):
TTTTAATATATTAT
Found at i:49125 original size:11 final size:11
Alignment explanation
Indices: 49084--49126 Score: 52
Period size: 11 Copynumber: 4.0 Consensus size: 11
49074 ACATATTAAA
49084 TAAA-AATATT
1 TAAATAATATT
* *
49094 AAAATAATAAT
1 TAAATAATATT
49105 TAAATAATATT
1 TAAATAATATT
*
49116 TAATTAATATT
1 TAAATAATATT
49127 ACACCTTATC
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
10 3 0.11
11 24 0.89
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (11 bp):
TAAATAATATT
Found at i:53326 original size:30 final size:29
Alignment explanation
Indices: 53247--53346 Score: 105
Period size: 30 Copynumber: 3.4 Consensus size: 29
53237 AATATTTTTA
*
53247 TTATATTTAAATAAACTCTTAATCTTTAAT
1 TTATATTTAAATAAGCT-TTAATCTTTAAT
* * *
53277 TTGTA-TCAAATAAAGCTTTAATCTTCAAT
1 TTATATTTAAAT-AAGCTTTAATCTTTAAT
53306 TTATATTTAAATAAGTCTTTAA-CTTTTAAT
1 TTATATTTAAATAAG-CTTTAATC-TTTAAT
*
53336 TTATACTTAAA
1 TTATATTTAAA
53347 AAAACTCTTA
Statistics
Matches: 58, Mismatches: 8, Indels: 8
0.78 0.11 0.11
Matches are distributed among these distances:
29 24 0.41
30 34 0.59
ACGTcount: A:0.39, C:0.10, G:0.03, T:0.48
Consensus pattern (29 bp):
TTATATTTAAATAAGCTTTAATCTTTAAT
Found at i:53860 original size:28 final size:29
Alignment explanation
Indices: 53829--53903 Score: 93
Period size: 28 Copynumber: 2.6 Consensus size: 29
53819 ATGTTCGTAT
53829 TTTTTATATATTATAATTATTTTTTAA-A
1 TTTTTATATATTATAATTATTTTTTAATA
*
53857 TTTTTATATATT-TATATAATTTTTTAATTA
1 TTTTTATATATTATA-ATTATTTTTTAA-TA
*
53887 TTTTT-TATGTTATAATT
1 TTTTTATATATTATAATT
53904 TATATTATAT
Statistics
Matches: 40, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
27 2 0.05
28 23 0.57
29 7 0.17
30 8 0.20
ACGTcount: A:0.32, C:0.00, G:0.01, T:0.67
Consensus pattern (29 bp):
TTTTTATATATTATAATTATTTTTTAATA
Found at i:53888 original size:20 final size:19
Alignment explanation
Indices: 53842--53890 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 19
53832 TTATATATTA
*
53842 TAATTATTTTTTAAATTTT
1 TAATTATTTTATAAATTTT
*
53861 T-ATATATTTATATAATTTTT
1 TAAT-TATTT-TATAAATTTT
53881 TAATTATTTT
1 TAATTATTTT
53891 TTATGTTATA
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
18 2 0.08
19 7 0.28
20 14 0.56
21 2 0.08
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (19 bp):
TAATTATTTTATAAATTTT
Found at i:58458 original size:15 final size:15
Alignment explanation
Indices: 58438--58467 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
58428 TTTTTAGTAT
*
58438 TATATATAATTATTA
1 TATATATAATAATTA
58453 TATATATAATAATTA
1 TATATATAATAATTA
58468 ATCATAAAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (15 bp):
TATATATAATAATTA
Found at i:58738 original size:20 final size:20
Alignment explanation
Indices: 58710--58748 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
58700 ATTAAATTTA
58710 CTTGAAAATAAAAATATAAC
1 CTTGAAAATAAAAATATAAC
* * *
58730 CTTGTAAATCAATATATAA
1 CTTGAAAATAAAAATATAA
58749 AGATTAAATA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.54, C:0.10, G:0.05, T:0.31
Consensus pattern (20 bp):
CTTGAAAATAAAAATATAAC
Found at i:58764 original size:8 final size:8
Alignment explanation
Indices: 58751--58781 Score: 62
Period size: 8 Copynumber: 3.9 Consensus size: 8
58741 ATATATAAAG
58751 ATTAAATA
1 ATTAAATA
58759 ATTAAATA
1 ATTAAATA
58767 ATTAAATA
1 ATTAAATA
58775 ATTAAAT
1 ATTAAAT
58782 TAAACAATAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 23 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (8 bp):
ATTAAATA
Found at i:59464 original size:14 final size:14
Alignment explanation
Indices: 59445--59475 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
59435 GCCCAAAATT
*
59445 AATAAAATAGGTTA
1 AATAAAATAAGTTA
59459 AATAAAATAAGTTA
1 AATAAAATAAGTTA
59473 AAT
1 AAT
59476 TCGATTCTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.61, C:0.00, G:0.10, T:0.29
Consensus pattern (14 bp):
AATAAAATAAGTTA
Found at i:59564 original size:2 final size:2
Alignment explanation
Indices: 59557--59592 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
59547 AAAATTCTAT
59557 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
59593 ATTGAATGTC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:59674 original size:17 final size:17
Alignment explanation
Indices: 59654--59688 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
59644 TTTTTATCAT
* *
59654 TGAAAATGATTTACAAG
1 TGAAAAAGAGTTACAAG
59671 TGAAAAAGAGTTACAAG
1 TGAAAAAGAGTTACAAG
59688 T
1 T
59689 TTAGGCTATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.49, C:0.06, G:0.20, T:0.26
Consensus pattern (17 bp):
TGAAAAAGAGTTACAAG
Found at i:59764 original size:11 final size:11
Alignment explanation
Indices: 59748--59785 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
59738 ATCTTGTCAT
59748 AATTTTATTTA
1 AATTTTATTTA
*
59759 AATTTTTTTTA
1 AATTTTATTTA
*
59770 TA-TTTATTTA
1 AATTTTATTTA
59780 AATTTT
1 AATTTT
59786 GATATATTAA
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
10 8 0.36
11 14 0.64
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (11 bp):
AATTTTATTTA
Found at i:59791 original size:20 final size:21
Alignment explanation
Indices: 59751--59793 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 21
59741 TTGTCATAAT
**
59751 TTTATTTAAATTTTTTTTATA
1 TTTATTTAAATTTTTGATATA
59772 TTTATTTAAA-TTTTGATATA
1 TTTATTTAAATTTTTGATATA
59792 TT
1 TT
59794 AATAATTCTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 10 0.50
21 10 0.50
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.67
Consensus pattern (21 bp):
TTTATTTAAATTTTTGATATA
Found at i:61333 original size:33 final size:33
Alignment explanation
Indices: 61291--61356 Score: 105
Period size: 33 Copynumber: 2.0 Consensus size: 33
61281 TATATATATA
61291 GTGGTGGGTGACTAGTCAACAAAAGCCACCTTT
1 GTGGTGGGTGACTAGTCAACAAAAGCCACCTTT
** *
61324 GTGGTGGGTGGTTAGTTAACAAAAGCCACCTTT
1 GTGGTGGGTGACTAGTCAACAAAAGCCACCTTT
61357 TGTTTGTCAA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.26, C:0.18, G:0.29, T:0.27
Consensus pattern (33 bp):
GTGGTGGGTGACTAGTCAACAAAAGCCACCTTT
Found at i:61390 original size:27 final size:27
Alignment explanation
Indices: 61359--61425 Score: 116
Period size: 27 Copynumber: 2.5 Consensus size: 27
61349 CCACCTTTTG
61359 TTTGTCAAAAATGATGGTTACTTTGTA
1 TTTGTCAAAAATGATGGTTACTTTGTA
* *
61386 TTTGTCAAAAATGATGGTTTCTTTTTA
1 TTTGTCAAAAATGATGGTTACTTTGTA
61413 TTTGTCAAAAATG
1 TTTGTCAAAAATG
61426 GTGGCATGTT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
27 38 1.00
ACGTcount: A:0.30, C:0.07, G:0.16, T:0.46
Consensus pattern (27 bp):
TTTGTCAAAAATGATGGTTACTTTGTA
Found at i:62815 original size:17 final size:17
Alignment explanation
Indices: 62793--62830 Score: 76
Period size: 17 Copynumber: 2.2 Consensus size: 17
62783 GTAGAACTAA
62793 ATGGAGGAGTTGTTTAT
1 ATGGAGGAGTTGTTTAT
62810 ATGGAGGAGTTGTTTAT
1 ATGGAGGAGTTGTTTAT
62827 ATGG
1 ATGG
62831 GTAATGACAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.24, C:0.00, G:0.37, T:0.39
Consensus pattern (17 bp):
ATGGAGGAGTTGTTTAT
Found at i:65925 original size:34 final size:34
Alignment explanation
Indices: 65882--65954 Score: 137
Period size: 34 Copynumber: 2.1 Consensus size: 34
65872 AAGGTGGAGA
65882 TTTGTGGTGGGTGGCTAGTCAACAAAAGCCACCC
1 TTTGTGGTGGGTGGCTAGTCAACAAAAGCCACCC
*
65916 TTTGTGGTGGGTGGCTAGTCAACAAAAGCCATCC
1 TTTGTGGTGGGTGGCTAGTCAACAAAAGCCACCC
65950 TTTGT
1 TTTGT
65955 TTATCAAAAA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 38 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (34 bp):
TTTGTGGTGGGTGGCTAGTCAACAAAAGCCACCC
Found at i:66017 original size:27 final size:27
Alignment explanation
Indices: 65955--66024 Score: 79
Period size: 27 Copynumber: 2.6 Consensus size: 27
65945 CATCCTTTGT
* *
65955 TTATCAAAAATGGTGATTACTTTGTAT
1 TTATCAAAAATGGTGGTTACTTTGTAA
* * *
65982 TTGTCAAAAATGGTGGTTTCTTTTTAA
1 TTATCAAAAATGGTGGTTACTTTGTAA
66009 TTAT-AAAAAGTGGTGG
1 TTATCAAAAA-TGGTGG
66025 CATGTTGTTT
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
26 5 0.14
27 31 0.86
ACGTcount: A:0.31, C:0.06, G:0.20, T:0.43
Consensus pattern (27 bp):
TTATCAAAAATGGTGGTTACTTTGTAA
Found at i:68164 original size:17 final size:18
Alignment explanation
Indices: 68142--68175 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
68132 TCCACCTGCA
68142 AGCTATTGGAA-AAATAT
1 AGCTATTGGAAGAAATAT
68159 AGCTATTGGAAGAAATA
1 AGCTATTGGAAGAAATA
68176 GAACACCAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.47, C:0.06, G:0.21, T:0.26
Consensus pattern (18 bp):
AGCTATTGGAAGAAATAT
Found at i:68945 original size:21 final size:22
Alignment explanation
Indices: 68907--68952 Score: 58
Period size: 21 Copynumber: 2.1 Consensus size: 22
68897 ATCTATTGAA
* **
68907 ACTCCACCTGTTTTGGAGTA-T
1 ACTCCACCTGCTGCGGAGTACT
68928 ACTCCACCTGCTGCGGAGTACT
1 ACTCCACCTGCTGCGGAGTACT
68950 ACT
1 ACT
68953 TGTCTGAACA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 17 0.81
22 4 0.19
ACGTcount: A:0.20, C:0.30, G:0.20, T:0.30
Consensus pattern (22 bp):
ACTCCACCTGCTGCGGAGTACT
Found at i:70247 original size:13 final size:13
Alignment explanation
Indices: 70229--70253 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
70219 CATAAAGTGT
70229 TGTATCGATACAA
1 TGTATCGATACAA
70242 TGTATCGATACA
1 TGTATCGATACA
70254 TAAGTGTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:70266 original size:19 final size:19
Alignment explanation
Indices: 70208--70291 Score: 99
Period size: 19 Copynumber: 4.7 Consensus size: 19
70198 TTTCAACGAT
70208 TTGTATCGATACATAAAGTG
1 TTGTATCGATACAT-AAGTG
70228 TTGTATCGATAC--AA---
1 TTGTATCGATACATAAGTG
70242 -TGTATCGATACATAAGTG
1 TTGTATCGATACATAAGTG
* *
70260 TTGTATCGATGCATAAGTT
1 TTGTATCGATACATAAGTG
70279 TTGTATCGATACA
1 TTGTATCGATACA
70292 ATATAAGCTA
Statistics
Matches: 55, Mismatches: 3, Indels: 13
0.77 0.04 0.18
Matches are distributed among these distances:
13 11 0.20
15 2 0.04
17 2 0.04
19 28 0.51
20 12 0.22
ACGTcount: A:0.32, C:0.12, G:0.19, T:0.37
Consensus pattern (19 bp):
TTGTATCGATACATAAGTG
Found at i:70352 original size:13 final size:13
Alignment explanation
Indices: 70334--70358 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
70324 ATTACTCAAA
70334 TGTATCGATACAT
1 TGTATCGATACAT
70347 TGTATCGATACA
1 TGTATCGATACA
70359 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:78509 original size:16 final size:17
Alignment explanation
Indices: 78488--78520 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
78478 AGATATATAC
78488 TTAT-AGTTGATTTTTT
1 TTATAAGTTGATTTTTT
78504 TTATAGAGTTGATTTTT
1 TTATA-AGTTGATTTTT
78521 AACATCAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 4 0.27
18 11 0.73
ACGTcount: A:0.21, C:0.00, G:0.15, T:0.64
Consensus pattern (17 bp):
TTATAAGTTGATTTTTT
Found at i:80185 original size:27 final size:28
Alignment explanation
Indices: 80139--80194 Score: 71
Period size: 27 Copynumber: 2.0 Consensus size: 28
80129 AATTTAATAT
* *
80139 ATTTTAATATTTATACTAT-ATTATAAA
1 ATTTTAATATATATACTATAATTAAAAA
80166 ATTTTAATATATATTA-TATAATTAAAAA
1 ATTTTAATATATA-TACTATAATTAAAAA
80194 A
1 A
80195 ATAAATTAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
27 15 0.60
28 10 0.40
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (28 bp):
ATTTTAATATATATACTATAATTAAAAA
Found at i:80896 original size:24 final size:24
Alignment explanation
Indices: 80869--80919 Score: 102
Period size: 24 Copynumber: 2.1 Consensus size: 24
80859 TAAGAAAAAA
80869 AATCACAAGTTGAGATTACATTTT
1 AATCACAAGTTGAGATTACATTTT
80893 AATCACAAGTTGAGATTACATTTT
1 AATCACAAGTTGAGATTACATTTT
80917 AAT
1 AAT
80920 TTTTTTTTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.39, C:0.12, G:0.12, T:0.37
Consensus pattern (24 bp):
AATCACAAGTTGAGATTACATTTT
Found at i:83412 original size:365 final size:364
Alignment explanation
Indices: 82723--83480 Score: 885
Period size: 365 Copynumber: 2.1 Consensus size: 364
82713 CCTTTAAATT
* * * *
82723 TCAATTTTAAGGTGAGAATTTGATAAC-AAATATTAAAA-TTC-TACTTAAAAACATGTATCAAT
1 TCAATTTT-AGGTGAGAATTTGATAACAAAAAATTAAAATTTCATA--TATAAGCATGCATCAAT
* *
82785 TA---ATTTTTTTTTTATCATTTGAGCTATAAATATAAGATTCATTATAATAAATAAGAACCATT
63 TAGTTTTTTTTTTTTTATCATTTGAGCTATAAATATAAGATTCATCATAATAAATAAGAACCATT
* **
82847 TGAAGCTGTTTTAATTAAATATTATAAAAATAAATAAAAATTACATGTTTAAAAAAATTAAAATA
128 TGAAGCTGTTATAATTAAATATTATAAAAATAAATAAAAATTACATGTTTAAAAAAAGGAAAATA
* * * ** *
82912 AAATATATGCTTACAATGCTTAAAAAATAAATTAAATTTTGATTTGTGAAGGATTTAATTTAATA
193 AAATATATGCTTACAACGCGTAAAAAATAAATTAAATTTTGATTTATGAAAAATTTAATTCAATA
* ** *
82977 TTTCAAGTAAAATTCCTCAAATTATTTGGAAACCTTACTTCTCTTGAGCACCTTGCTCTTACTTA
258 TTTCAAGTAAAATTCATCAAATTATTTGGAAACCTTACTTCTCTCAAGCACCTTGCTCTTACTGA
** * *
83042 TAACAACTTAAT-GGCATAATTTCAT-TTTTCTTTTACCTTTC
323 TAACAACTTAATAAACATAATTTC-TCCTTTCTTCTACCTTTC
* *
83083 TCAATTTTTGGATTAGAATTTGATAACAAAAAATTAAAATTTCATATATAAGCATGCATCAATTA
1 TCAATTTTAGG-TGAGAATTTGATAACAAAAAATTAAAATTTCATATATAAGCATGCATCAATTA
* * * * * *
83148 GTTTTTTTTTTTTGTATTATTTGAGCTATAAATTTGAGATTCGTCATAATAGATAAGAATCATTT
65 GTTTTTTTTTTTT-TATCATTTGAGCTATAAATATAAGATTCATCATAATAAATAAGAACCATTT
* * * *
83213 GAAGCTAG-TATAATTACATATTATAAAAATAAATAGAATTTGCATGTTTAAAAAAAAGGAAAAT
129 GAAGCT-GTTATAATTAAATATTATAAAAATAAATAAAAATTACATGTTT-AAAAAAAGGAAAAT
** * *
83277 AAAATATATGCTTGTAACGCGTAATAAATAAATTAAGTTTTGATTTATGAAAAATTTAATTCAAT
192 AAAATATATGCTTACAACGCGTAAAAAATAAATTAAATTTTGATTTATGAAAAATTTAATTCAAT
* * * * * **
83342 ATTTTAGGTAAAATTTCATC-AGTTA-TTGGAAA-CTTACTTTCTCTCAAGTATCTTTTTCTTA-
257 ATTTCAAGTAAAA-TTCATCAAATTATTTGGAAACCTTAC-TTCTCTCAAGCACCTTGCTCTTAC
* *
83403 TAGATAACAACTTAATAAATATAATTTCTCCTTTCTTCTACTTTTC
320 T-GATAACAACTTAATAAACATAATTTCTCCTTTCTTCTACCTTTC
*
83449 TCAATTTTAGGTGAGAATTTGATAATAAAAAA
1 TCAATTTTAGGTGAGAATTTGATAACAAAAAA
83481 AAATTAAAAC
Statistics
Matches: 332, Mismatches: 51, Indels: 25
0.81 0.12 0.06
Matches are distributed among these distances:
359 2 0.01
360 22 0.07
361 26 0.08
362 3 0.01
363 2 0.01
364 15 0.05
365 143 0.43
366 114 0.34
367 5 0.02
ACGTcount: A:0.40, C:0.10, G:0.09, T:0.41
Consensus pattern (364 bp):
TCAATTTTAGGTGAGAATTTGATAACAAAAAATTAAAATTTCATATATAAGCATGCATCAATTAG
TTTTTTTTTTTTTATCATTTGAGCTATAAATATAAGATTCATCATAATAAATAAGAACCATTTGA
AGCTGTTATAATTAAATATTATAAAAATAAATAAAAATTACATGTTTAAAAAAAGGAAAATAAAA
TATATGCTTACAACGCGTAAAAAATAAATTAAATTTTGATTTATGAAAAATTTAATTCAATATTT
CAAGTAAAATTCATCAAATTATTTGGAAACCTTACTTCTCTCAAGCACCTTGCTCTTACTGATAA
CAACTTAATAAACATAATTTCTCCTTTCTTCTACCTTTC
Found at i:83523 original size:365 final size:362
Alignment explanation
Indices: 82788--83565 Score: 869
Period size: 365 Copynumber: 2.1 Consensus size: 362
82778 TATCAATTAA
* * *
82788 TTTTTTTTTTATCATTTGAGCTATAAATATAAGATTCATTATAATAAATAAGAACCATTTGAAGC
1 TTTTTTTTTTATCATTTGAGCTATAAATTTAAGATTCGTCATAATAAATAAGAACCATTTGAAGC
* **
82853 TGTTTTAATTAAATATTATAAAAATAAATAAAAATTACATGTTTAAAAAAATTAAAATAAAATAT
66 TGTTATAATTAAATATTATAAAAATAAATAAAAATTACATGTTTAAAAAAAGGAAAATAAAATAT
* * * ** *
82918 ATGCTTACAATGCTTAAAAAATAAATTAAATTTTGATTTGTGAAGGATTTAATTTAATATTTCAA
131 ATGCTTACAACGCGTAAAAAATAAATTAAATTTTGATTTATGAAAAATTTAATTCAATATTTCAA
* ** *
82983 GTAAAATTCCTCAAATTATTTGGAAACCTTACTTCTCTTGAGCACCTTGCTCTTACTTATAACAA
196 GTAAAATTCATCAAATTATTTGGAAACCTTACTTCTCTCAAGCACCTTGCTCTTACTGATAACAA
** * * * * *
83048 CTTAATGGCATAATTTCATTTTTCTTTTACCTTTCTCAATTTTTGGATTAGAATTTGATAACAAA
261 CTTAATAACATAATTTCATCTTTCTTCTACCTTTCTCAATTTTAGGATGAGAATTTGATAAAAAA
* * **
83113 AAATTAAAATTTCATATATAAGCATGCATCAATTAGTTT
326 AAATTAAAATTTCATATATAAACATACATCAACCAG--T
* * * *
83152 TTTTTTTTTGTATTATTTGAGCTATAAATTTGAGATTCGTCATAATAGATAAGAATCATTTGAAG
1 TTTTTTTTT-TATCATTTGAGCTATAAATTTAAGATTCGTCATAATAAATAAGAACCATTTGAAG
* * * *
83217 CTAG-TATAATTACATATTATAAAAATAAATAGAATTTGCATGTTTAAAAAAAAGGAAAATAAAA
65 CT-GTTATAATTAAATATTATAAAAATAAATAAAAATTACATGTTT-AAAAAAAGGAAAATAAAA
** * *
83281 TATATGCTTGTAACGCGTAATAAATAAATTAAGTTTTGATTTATGAAAAATTTAATTCAATATTT
128 TATATGCTTACAACGCGTAAAAAATAAATTAAATTTTGATTTATGAAAAATTTAATTCAATATTT
* * * * * **
83346 TAGGTAAAATTTCATC-AGTTA-TTGGAAA-CTTACTTTCTCTCAAGTATCTTTTTCTTA-TAGA
193 CAAGTAAAA-TTCATCAAATTATTTGGAAACCTTAC-TTCTCTCAAGCACCTTGCTCTTACT-GA
* *
83407 TAACAACTTAATAAATATAATTTC-TCCTTTCTTCTACTTTTCTCAATTTTAGG-TGAGAATTTG
255 TAACAACTTAAT-AACATAATTTCAT-CTTTCTTCTACCTTTCTCAATTTTAGGATGAGAATTTG
* * *
83470 ATAATAAAAAAAAATTAAAACTTT-ACT-TCTAAATATATATCAACCAG-
318 ---ATAAAAAAAAATTAAAA-TTTCA-TATATAAACATACATCAACCAGT
*
83517 --TTTTTTTTATCATTTGAGCTATAAATTTAAGATTTGTCATAATAAATAA
1 TTTTTTTTTTATCATTTGAGCTATAAATTTAAGATTCGTCATAATAAATAA
83566 TTATGTATTA
Statistics
Matches: 346, Mismatches: 55, Indels: 28
0.81 0.13 0.07
Matches are distributed among these distances:
362 38 0.11
363 7 0.02
364 15 0.04
365 133 0.38
366 114 0.33
367 5 0.01
368 30 0.09
369 4 0.01
ACGTcount: A:0.40, C:0.10, G:0.09, T:0.41
Consensus pattern (362 bp):
TTTTTTTTTTATCATTTGAGCTATAAATTTAAGATTCGTCATAATAAATAAGAACCATTTGAAGC
TGTTATAATTAAATATTATAAAAATAAATAAAAATTACATGTTTAAAAAAAGGAAAATAAAATAT
ATGCTTACAACGCGTAAAAAATAAATTAAATTTTGATTTATGAAAAATTTAATTCAATATTTCAA
GTAAAATTCATCAAATTATTTGGAAACCTTACTTCTCTCAAGCACCTTGCTCTTACTGATAACAA
CTTAATAACATAATTTCATCTTTCTTCTACCTTTCTCAATTTTAGGATGAGAATTTGATAAAAAA
AAATTAAAATTTCATATATAAACATACATCAACCAGT
Found at i:84381 original size:351 final size:349
Alignment explanation
Indices: 83164--84381 Score: 938
Period size: 351 Copynumber: 3.5 Consensus size: 349
83154 TTTTTTTGTA
* * * * * *
83164 TTATTTGAGCTATAAATTTGAGATTCGTCATAATAGATAAGAATCATTTGAAGCTAGT-ATAATT
1 TTATTTAAGCTATAAATTTGAGATTCATCATAATATATAAGAACCATTTAAAACTA-TCATAA-T
* * * ** * *
83228 ACA-TATTATAAAAATAAATAGAATTTGCATGTTTAAAAAAAAGGAAAATAAAATATATGCTTGT
64 A-AGTATTATAAAAATAAATAGAAGTTGCATGTTTAAAAAAAAGAAAAATAAAATAGACACCTAT
* * * * * * * *
83292 AACGCGT-AATAAATAAATTAAGTTTTGATTTATGAA-AAATTTAATTCAATATTTTAGGTAAAA
128 AACAC-TCAAGAAATAAATTAAGTTTTGACTTGT-AAGAGATTTAATTCAATGTTTCAGGTGAAA
* * * * * * ** *
83355 TTTCATCAGTTATTGGAAACTT-ACTTTCTCTCAAGTATCTTTTTC-TTATAGATAACAACTTAA
191 TTCCACCAATTATTGAAAACTTAAC-TTCTCTAAAGTACCTTGATCTTTCTA-ATAACAACTTAA
* * * * *
83418 -TAAATATAATTTC-TCCTTTCTTCTACTTTTCTCAA-TTTTAGGTGAGAATTTGATAATAAAAA
254 CT-AGTATAATTTCAT-CTTTCTTATACTTTTCTCAATTTTTAGGTGAAAACTTG---AT-AACA
* * * *
83480 AAAATTAAAACTTTACTTCTAAATATATATCAACCAG
313 AAAATTAAAACTTTACTTATAAACATGTATCAACTAG
** * * * * *
83517 TT-TTT--TTTAT-CATTTGAG---C-T-ATAA-ATTTAAG-A--TTTGTCATAA-TA-AATAAT
1 TTATTTAAGCTATAAATTTGAGATTCATCATAATATATAAGAACCATT-T-AAAACTATCATAA-
* * ** * *
83567 TATGTATTATAAAAATAAATAGAAATTTTATGTTTAAAAAAAA-TAAAAT---ATA-A-GCCTAT
63 TAAGTATTATAAAAATAAATAGAAGTTGCATGTTTAAAAAAAAGAAAAATAAAATAGACACCTAT
* * * ** *
83626 AACACTCAAAAAATAAATTGAGTTTTGACTTGTAAGGGATTTAATTCAACATTTTAGGTGAAATT
128 AACACTCAAGAAATAAATTAAGTTTTGACTTGTAAGAGATTTAATTCAATGTTTCAGGTGAAATT
* * * * * * *
83691 TCATCAATTATTGAAAACTTGACTTCTCTAAAGTGCCTTGCTCTTTTTAATAACAATTTAACTAG
193 CCACCAATTATTGAAAACTTAACTTCTCTAAAGTACCTTGATCTTTCTAATAACAACTTAACTAG
* * *
83756 TATAATTTCGTCTTTCTTCTACTTTTCTCAATTTTTAGGTGAGAACTTGATAACAAAAATTAAAA
258 TATAATTTCATCTTTCTTATACTTTTCTCAATTTTTAGGTGAAAACTTGATAACAAAAATTAAAA
83821 CTTTACTTATAAACATGTATCAACTAG
323 CTTTACTTATAAACATGTATCAACTAG
* *
83848 TTATTTGAGCTATAAATTTGAGATTTATCATAATATATAAGAACCATTTAAAACTATCATAATTA
1 TTATTTAAGCTATAAATTTGAGATTCATCATAATATATAAGAACCATTTAAAACTATCATAA-TA
* * *
83913 AGTATTATAATAATAAATAGAAGTTGCATGTTTAAAAAAAAAGAAAAATAAAATATACACCAATA
65 AGTATTATAAAAATAAATAGAAGTTGCATGTTT-AAAAAAAAGAAAAATAAAATAGACACCTATA
* * * *
83978 GCGCTTAAGAAATAAATTAAGTTTTGACTTGTAAGATATTTAATTCAATGTTTCAGGTGAAATTC
129 ACACTCAAGAAATAAATTAAGTTTTGACTTGTAAGAGATTTAATTCAATGTTTCAGGTGAAATTC
* * * *
84043 CACCAGTTATT-AGAAATTTAACTTCTCTCAAGTACCTTGATCTTTCTAGTAACAACTTAAC-AG
194 CACCAATTATTGA-AAACTTAACTTCTCTAAAGTACCTTGATCTTTCTAATAACAACTTAACTAG
* * *
84106 ATATAATTTCATTTTTCTTATACTTTTCTTAATTTTT-GAGTGAAAATTTGATAA-AAACAATTA
258 -TATAATTTCATCTTTCTTATACTTTTCTCAATTTTTAG-GTGAAAACTTGATAACAAA-AATTA
**
84169 AAACTTTACTTATAAACATGTATCAACAATTTTTT
320 AAACTTTACTTATAAACATGTATCAAC-----TAG
* * * * *
84204 TATCATTTAAGCTATAGATTTGAGATTCATCTTAATAATAATAATAACCATTT-AAA-T-T-GTC
1 T-T-ATTTAAGCTATAAATTTGAGATTCATCATAAT-AT-ATAAGAACCATTTAAAACTATCATA
* * * **
84265 A-AAGTATTATAAAAATAAATA-AATGTTGCATG-TT-GAAAAACGAAAAATAAAATAGATATTT
62 ATAAGTATTATAAAAATAAATAGAA-GTTGCATGTTTAAAAAAAAGAAAAATAAAATAGACACCT
* * * *
84326 ATAACACTCAAGAAATAAATTAATTTTTAATTTTTAAGAGATTTAACTT-AATGTTT
126 ATAACACTCAAGAAATAAATTAAGTTTTGACTTGTAAGAGATTTAA-TTCAATGTTT
84382 TAAGCAAAAT
Statistics
Matches: 708, Mismatches: 109, Indels: 98
0.77 0.12 0.11
Matches are distributed among these distances:
331 38 0.05
332 5 0.01
333 3 0.00
334 132 0.19
335 32 0.05
336 3 0.00
339 6 0.01
340 49 0.07
341 9 0.01
342 6 0.01
343 8 0.01
344 41 0.06
345 9 0.01
346 6 0.01
349 10 0.01
350 11 0.02
351 250 0.35
352 5 0.01
353 6 0.01
354 27 0.04
356 4 0.01
357 2 0.00
358 29 0.04
359 5 0.01
360 12 0.02
ACGTcount: A:0.41, C:0.10, G:0.10, T:0.39
Consensus pattern (349 bp):
TTATTTAAGCTATAAATTTGAGATTCATCATAATATATAAGAACCATTTAAAACTATCATAATAA
GTATTATAAAAATAAATAGAAGTTGCATGTTTAAAAAAAAGAAAAATAAAATAGACACCTATAAC
ACTCAAGAAATAAATTAAGTTTTGACTTGTAAGAGATTTAATTCAATGTTTCAGGTGAAATTCCA
CCAATTATTGAAAACTTAACTTCTCTAAAGTACCTTGATCTTTCTAATAACAACTTAACTAGTAT
AATTTCATCTTTCTTATACTTTTCTCAATTTTTAGGTGAAAACTTGATAACAAAAATTAAAACTT
TACTTATAAACATGTATCAACTAG
Found at i:86264 original size:23 final size:24
Alignment explanation
Indices: 86219--86264 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 24
86209 ACAAAGAAGG
**
86219 AGAATCTTCAAGCTGTTGGTGGTT
1 AGAATCTTCAAGCTGTTAATGGTT
*
86243 AGAAT-TTCAAGCTTTTAATGGT
1 AGAATCTTCAAGCTGTTAATGGT
86265 AAGATATATA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
23 14 0.74
24 5 0.26
ACGTcount: A:0.26, C:0.11, G:0.24, T:0.39
Consensus pattern (24 bp):
AGAATCTTCAAGCTGTTAATGGTT
Found at i:89758 original size:14 final size:13
Alignment explanation
Indices: 89739--89768 Score: 51
Period size: 13 Copynumber: 2.2 Consensus size: 13
89729 TCCTTTTAAG
89739 TTTTCTTCTTTCTT
1 TTTTCTT-TTTCTT
89753 TTTTCTTTTTCTT
1 TTTTCTTTTTCTT
89766 TTT
1 TTT
89769 ATTGGTTTGT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.56
14 7 0.44
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (13 bp):
TTTTCTTTTTCTT
Found at i:90821 original size:127 final size:127
Alignment explanation
Indices: 90670--90916 Score: 318
Period size: 127 Copynumber: 1.9 Consensus size: 127
90660 AAATTAGAAA
* * * * * * *
90670 AGAAAATTGTGCCCCTTCTAGCAAGTTGTTTATTATTTTCAATAGAAAAAAATGATAAAGGTAGA
1 AGAAAATGGTACCCCTTCTAGCAAGTTATATATTATCTTCAATAGAAAAAAATGACAAAGGTAAA
*
90735 TCAATTATTATACTTCTACGAAT-GAAAATTGAATGCTAATATTTA-TCTTAGAGCATGAGGAG
66 TCAATTATTATACTTCTACCAATAG-AAATTGAATGCTAATATTTATTC-TAGAGCATGAGGAG
* * * ** *
90797 AGAAAATGGTACCCTTTCTCGCAAGTTATATATTGTCTTCAATAGAAAAAAATGACGGAGTTAAA
1 AGAAAATGGTACCCCTTCTAGCAAGTTATATATTATCTTCAATAGAAAAAAATGACAAAGGTAAA
* *
90862 TTAATTATTATACTTCTACCAATAGAAATTGAATGTTAATATTTATTCTAGAGCA
66 TCAATTATTATACTTCTACCAATAGAAATTGAATGCTAATATTTATTCTAGAGCA
90917 CAATTTTTTG
Statistics
Matches: 102, Mismatches: 16, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
127 99 0.97
128 3 0.03
ACGTcount: A:0.39, C:0.12, G:0.15, T:0.34
Consensus pattern (127 bp):
AGAAAATGGTACCCCTTCTAGCAAGTTATATATTATCTTCAATAGAAAAAAATGACAAAGGTAAA
TCAATTATTATACTTCTACCAATAGAAATTGAATGCTAATATTTATTCTAGAGCATGAGGAG
Found at i:92745 original size:11 final size:11
Alignment explanation
Indices: 92728--92757 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
92718 TGTGTATCGT
92728 ATTATATTATA
1 ATTATATTATA
*
92739 TTTATATTATA
1 ATTATATTATA
92750 ATTATATT
1 ATTATATT
92758 TGAGATATAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (11 bp):
ATTATATTATA
Found at i:92766 original size:17 final size:16
Alignment explanation
Indices: 92728--92774 Score: 60
Period size: 16 Copynumber: 2.9 Consensus size: 16
92718 TGTGTATCGT
*
92728 ATTATATTATATTTAT
1 ATTATATTATATTTAG
92744 ATTATAATTATATTTGAG
1 ATTAT-ATTATATTT-AG
92762 A-TATATTATATTT
1 ATTATATTATATTT
92775 TATAATAAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
16 14 0.50
17 12 0.43
18 2 0.07
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.57
Consensus pattern (16 bp):
ATTATATTATATTTAG
Found at i:92791 original size:27 final size:29
Alignment explanation
Indices: 92735--92805 Score: 76
Period size: 28 Copynumber: 2.5 Consensus size: 29
92725 CGTATTATAT
* *
92735 TATATT-TATATTATAATTATATTTGAGA
1 TATATTATATTTTATAATTAAATTTGAGA
*
92763 TATATTATATTTTATAA-TAAATTT-TGA
1 TATATTATATTTTATAATTAAATTTGAGA
*
92790 TATATTAATAATTTAT
1 TATATT-ATATTTTAT
92806 GTCATATAAA
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
27 8 0.22
28 20 0.54
29 9 0.24
ACGTcount: A:0.41, C:0.00, G:0.04, T:0.55
Consensus pattern (29 bp):
TATATTATATTTTATAATTAAATTTGAGA
Found at i:92860 original size:40 final size:41
Alignment explanation
Indices: 92764--92875 Score: 92
Period size: 40 Copynumber: 2.8 Consensus size: 41
92754 TATTTGAGAT
* *
92764 ATATTATATTTTATAATAAATTTTGATATATTAATAATTTATGTC
1 ATATTAT-TTTT-TAATATATTT-G-TATATTAATAATTCATGTC
**
92809 ATA-TAAATTTTAATATATTTGTATATTAAT-A-TCATGTTC
1 ATATTATTTTTTAATATATTTGTATATTAATAATTCATG-TC
*
92848 ATATTATTTTTT-ATATGTTT-TA-ATTAAT
1 ATATTATTTTTTAATATATTTGTATATTAAT
92876 TTTATGTAAT
Statistics
Matches: 58, Mismatches: 7, Indels: 12
0.75 0.09 0.16
Matches are distributed among these distances:
37 6 0.10
38 6 0.10
39 13 0.22
40 15 0.26
41 1 0.02
42 9 0.16
43 3 0.05
44 2 0.03
45 3 0.05
ACGTcount: A:0.38, C:0.03, G:0.04, T:0.55
Consensus pattern (41 bp):
ATATTATTTTTTAATATATTTGTATATTAATAATTCATGTC
Found at i:93341 original size:23 final size:23
Alignment explanation
Indices: 93315--93368 Score: 90
Period size: 23 Copynumber: 2.3 Consensus size: 23
93305 TTTAAGTTTA
* *
93315 AAAATTTTGACTTTTAAATATTT
1 AAAATTTTGAATATTAAATATTT
93338 AAAATTTTGAATATTAAATATTT
1 AAAATTTTGAATATTAAATATTT
93361 AAAATTTT
1 AAAATTTT
93369 AAAATTTATA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.44, C:0.02, G:0.04, T:0.50
Consensus pattern (23 bp):
AAAATTTTGAATATTAAATATTT
Found at i:98787 original size:28 final size:27
Alignment explanation
Indices: 98730--98798 Score: 68
Period size: 27 Copynumber: 2.5 Consensus size: 27
98720 CACCCATTTG
* * *
98730 TTTGTTAAAAATGGTGGTTATTTTGTA
1 TTTGTAAAAAATGGTAGTTATTTTATA
98757 TTTGTAAAAAATGGTAGTT-TCCTTTATA
1 TTTGTAAAAAATGGTAGTTAT--TTTATA
* *
98785 TTTGTCAAATATGG
1 TTTGTAAAAAATGG
98799 AGGCTTGTTT
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
26 1 0.03
27 17 0.49
28 17 0.49
ACGTcount: A:0.29, C:0.04, G:0.19, T:0.48
Consensus pattern (27 bp):
TTTGTAAAAAATGGTAGTTATTTTATA
Found at i:103362 original size:28 final size:27
Alignment explanation
Indices: 103303--103392 Score: 87
Period size: 28 Copynumber: 3.4 Consensus size: 27
103293 CACCCATTTG
* *
103303 TTTGTCAAAAATGGTGGTTATTTTGTG
1 TTTGTCAAAAATGGTGGTTATTTTATA
103330 TTTGTCAAAAATGGTGGTT-TCCTTTATA
1 TTTGTCAAAAATGGTGGTTAT--TTTATA
* * * *
103358 TTTGTCAAATATGGAGGCT-TGTT-TA
1 TTTGTCAAAAATGGTGGTTATTTTATA
103383 TTTGTCAAAA
1 TTTGTCAAAA
103393 TTTGTGGCTA
Statistics
Matches: 54, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
25 11 0.20
26 3 0.06
27 19 0.35
28 21 0.39
ACGTcount: A:0.26, C:0.08, G:0.21, T:0.46
Consensus pattern (27 bp):
TTTGTCAAAAATGGTGGTTATTTTATA
Done.