Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold312
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1822960
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
File 1 of 12
Found at i:1111 original size:21 final size:20
Alignment explanation
Indices: 1065--1111 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 20
1055 TTTGATGCTG
1065 ATTTTGATGAAAAACGAAGT
1 ATTTTGATGAAAAACGAAGT
1085 -TATTTGAAGTGAAAAAC-AAGT
1 AT-TTTG-A-TGAAAAACGAAGT
1106 ATTTTG
1 ATTTTG
1112 CAAAAGATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 7
0.77 0.00 0.23
Matches are distributed among these distances:
19 1 0.04
20 4 0.17
21 9 0.39
22 9 0.39
ACGTcount: A:0.43, C:0.04, G:0.19, T:0.34
Consensus pattern (20 bp):
ATTTTGATGAAAAACGAAGT
Found at i:1250 original size:13 final size:13
Alignment explanation
Indices: 1232--1257 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1222 ATAATCACCC
1232 TGTATCGATACAA
1 TGTATCGATACAA
1245 TGTATCGATACAA
1 TGTATCGATACAA
1258 AGAAAAATGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:3358 original size:15 final size:15
Alignment explanation
Indices: 3338--3368 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
3328 ATTTCGTTTG
*
3338 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
3353 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
3368 G
1 G
3369 GACATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Found at i:5197 original size:21 final size:21
Alignment explanation
Indices: 5168--5212 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
5158 AAGTTTTCAT
*
5168 TTTTCTTAGCTAAC-TCATTA
1 TTTTCTTAGCCAACTTCATTA
*
5188 TTTTCATTAGCCAACTTCTTTA
1 TTTTC-TTAGCCAACTTCATTA
5210 TTT
1 TTT
5213 CAACTTGCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 8 0.38
22 8 0.38
ACGTcount: A:0.22, C:0.20, G:0.04, T:0.53
Consensus pattern (21 bp):
TTTTCTTAGCCAACTTCATTA
Found at i:7452 original size:13 final size:13
Alignment explanation
Indices: 7434--7459 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
7424 ATTTTTTTTG
7434 TGTATCGATACAT
1 TGTATCGATACAT
7447 TGTATCGATACAT
1 TGTATCGATACAT
7460 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:9839 original size:21 final size:21
Alignment explanation
Indices: 9815--9861 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 21
9805 TTTGATGCTG
9815 ATTTTG-A-TGAAAAACGAAGT
1 ATTTTGAAGTGAAAAAC-AAGT
9835 -TATTTGAAGTGAAAAACAAGT
1 AT-TTTGAAGTGAAAAACAAGT
9856 ATTTTG
1 ATTTTG
9862 CAAAAGATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 7
0.77 0.00 0.23
Matches are distributed among these distances:
19 1 0.04
20 4 0.17
21 9 0.39
22 9 0.39
ACGTcount: A:0.43, C:0.04, G:0.19, T:0.34
Consensus pattern (21 bp):
ATTTTGAAGTGAAAAACAAGT
Found at i:10000 original size:13 final size:13
Alignment explanation
Indices: 9982--10007 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
9972 ATAATCACCC
9982 TGTATCGATACAA
1 TGTATCGATACAA
9995 TGTATCGATACAA
1 TGTATCGATACAA
10008 AGAAAAATGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:12107 original size:15 final size:15
Alignment explanation
Indices: 12087--12117 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
12077 ATTTCGTTTG
*
12087 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
12102 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
12117 G
1 G
12118 GACATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Found at i:13950 original size:21 final size:21
Alignment explanation
Indices: 13921--13965 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
13911 AAGTTTTCAT
*
13921 TTTTCTTAGCTAAC-TCATTA
1 TTTTCTTAGCCAACTTCATTA
*
13941 TTTTCATTAGCCAACTTCTTTA
1 TTTTC-TTAGCCAACTTCATTA
13963 TTT
1 TTT
13966 CAACTTGCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 8 0.38
22 8 0.38
ACGTcount: A:0.22, C:0.20, G:0.04, T:0.53
Consensus pattern (21 bp):
TTTTCTTAGCCAACTTCATTA
Found at i:16205 original size:13 final size:13
Alignment explanation
Indices: 16187--16212 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
16177 ATTTTTTTTG
16187 TGTATCGATACAT
1 TGTATCGATACAT
16200 TGTATCGATACAT
1 TGTATCGATACAT
16213 ACTTGTTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:19455 original size:58 final size:57
Alignment explanation
Indices: 19355--19504 Score: 167
Period size: 58 Copynumber: 2.6 Consensus size: 57
19345 TATTTAAATA
* *
19355 ATTTTTCATGATCTAAGGACTTTTATGTTATTATATGCATTTTAATGTCATTTAGGTC
1 ATTTTTCATGATCTAAGGACTTTTATGTCATTATAT-CATTTTAATATCATTTAGGTC
* * *
19413 ATTTTTCATGATCTAGGGACTTTTATGTCATTTCATAT-ATTTTGATATCATTTGGGTC
1 ATTTTTCATGATCTAAGGACTTTTATGTCA-TT-ATATCATTTTAATATCATTTAGGTC
** * *
19471 ATTTACCATGATCTAAATGAATTTTGATGTCATT
1 ATTTTTCATGATCT-AAGGACTTTT-ATGTCATT
19505 TAGGTTATTT
Statistics
Matches: 78, Mismatches: 10, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
58 57 0.73
59 11 0.14
60 10 0.13
ACGTcount: A:0.26, C:0.11, G:0.14, T:0.49
Consensus pattern (57 bp):
ATTTTTCATGATCTAAGGACTTTTATGTCATTATATCATTTTAATATCATTTAGGTC
Found at i:20552 original size:17 final size:18
Alignment explanation
Indices: 20518--20556 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
20508 TCCATGTGCG
*
20518 TGGAAAATTAAATAATTT
1 TGGAAAATAAAATAATTT
*
20536 TGGAAAATAAAATATTTT
1 TGGAAAATAAAATAATTT
20554 TGG
1 TGG
20557 TTATTTTTTG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.46, C:0.00, G:0.15, T:0.38
Consensus pattern (18 bp):
TGGAAAATAAAATAATTT
Found at i:27410 original size:9 final size:9
Alignment explanation
Indices: 27396--27422 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
27386 AAGTGACTTC
27396 AAATCATCA
1 AAATCATCA
27405 AAATCATCA
1 AAATCATCA
27414 AAATCATCA
1 AAATCATCA
27423 CAATAATCCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.56, C:0.22, G:0.00, T:0.22
Consensus pattern (9 bp):
AAATCATCA
Found at i:28313 original size:52 final size:52
Alignment explanation
Indices: 28165--28293 Score: 231
Period size: 52 Copynumber: 2.5 Consensus size: 52
28155 CGAAATATGA
*
28165 AAATTTGCCTGCATATATCGATACATTTCATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
* *
28217 AAGTTTGCCTGCATGTATCGATACATTTTATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
28269 AAATTTGCCTGCATGTATCGATACA
1 AAATTTGCCTGCATGTATCGATACA
28294 AAGATCAGTG
Statistics
Matches: 73, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
52 73 1.00
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.35
Consensus pattern (52 bp):
AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
Found at i:28320 original size:13 final size:13
Alignment explanation
Indices: 28302--28326 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
28292 CAAAGATCAG
28302 TGTATCGATACAA
1 TGTATCGATACAA
28315 TGTATCGATACA
1 TGTATCGATACA
28327 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:28389 original size:13 final size:13
Alignment explanation
Indices: 28371--28422 Score: 50
Period size: 13 Copynumber: 3.5 Consensus size: 13
28361 AGCTTCGTAG
28371 CGATACATTGTAT
1 CGATACATTGTAT
28384 CGATACAAAACTTATGTAT
1 CGATAC---A-TT--GTAT
28403 CGATACATTGTAT
1 CGATACATTGTAT
28416 CGATACA
1 CGATACA
28423 ACACTTATGT
Statistics
Matches: 33, Mismatches: 0, Indels: 12
0.73 0.00 0.27
Matches are distributed among these distances:
13 17 0.52
15 2 0.06
16 2 0.06
17 2 0.06
19 10 0.30
ACGTcount: A:0.37, C:0.17, G:0.13, T:0.33
Consensus pattern (13 bp):
CGATACATTGTAT
Found at i:28403 original size:19 final size:18
Alignment explanation
Indices: 28379--28473 Score: 75
Period size: 19 Copynumber: 5.7 Consensus size: 18
28369 AGCGATACAT
28379 TGTATCGATACAAAACTTA
1 TGTATCGATAC-AAACTTA
28398 TGTATCGATAC--A--T-
1 TGTATCGATACAAACTTA
28411 TGTATCGATACAACACTTA
1 TGTATCGATACAA-ACTTA
*
28430 TGTATTGATAC--A--T-
1 TGTATCGATACAAACTTA
*
28443 TGTATCAATACAACACTTA
1 TGTATCGATACAA-ACTTA
28462 TGTATCGATACA
1 TGTATCGATACA
28474 GATCGTTGAA
Statistics
Matches: 60, Mismatches: 4, Indels: 24
0.68 0.05 0.27
Matches are distributed among these distances:
13 20 0.33
14 2 0.03
16 4 0.07
18 2 0.03
19 32 0.53
ACGTcount: A:0.37, C:0.17, G:0.12, T:0.35
Consensus pattern (18 bp):
TGTATCGATACAAACTTA
Found at i:28412 original size:32 final size:32
Alignment explanation
Indices: 28371--28473 Score: 179
Period size: 32 Copynumber: 3.2 Consensus size: 32
28361 AGCTTCGTAG
*
28371 CGATACATTGTATCGATACAAAACTTATGTAT
1 CGATACATTGTATCGATACAACACTTATGTAT
28403 CGATACATTGTATCGATACAACACTTATGTAT
1 CGATACATTGTATCGATACAACACTTATGTAT
* *
28435 TGATACATTGTATCAATACAACACTTATGTAT
1 CGATACATTGTATCGATACAACACTTATGTAT
28467 CGATACA
1 CGATACA
28474 GATCGTTGAA
Statistics
Matches: 67, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 67 1.00
ACGTcount: A:0.37, C:0.17, G:0.12, T:0.34
Consensus pattern (32 bp):
CGATACATTGTATCGATACAACACTTATGTAT
Found at i:29285 original size:52 final size:52
Alignment explanation
Indices: 29186--29409 Score: 262
Period size: 52 Copynumber: 4.4 Consensus size: 52
29176 ATATGCGGCT
* * * * *
29186 AGCGATATTGGACTTAAAGAT---AAAGGTGCTAATGTGCTGATTCAAGGCC
1 AGCGACATTGGACTTAAAGATGACAAAGGCGCCAATATGTTGATTCAAGGCC
*
29235 AGCGACATTGGACTTAAAGATGACAAAGGCGCCAACATGTTGATTCAAGGCC
1 AGCGACATTGGACTTAAAGATGACAAAGGCGCCAATATGTTGATTCAAGGCC
* * * * * * *
29287 AGCGATATTGGTCCTAAAGGTG---AAGGTGCCAATGTGCTGATTCAAGGCC
1 AGCGACATTGGACTTAAAGATGACAAAGGCGCCAATATGTTGATTCAAGGCC
* *
29336 AACGACATTGGACTTAAAGATGACAAAGGCGCCAATATGTTGATTCAAGGCT
1 AGCGACATTGGACTTAAAGATGACAAAGGCGCCAATATGTTGATTCAAGGCC
*
29388 AGCGATATTGGACTTAAAGATG
1 AGCGACATTGGACTTAAAGATG
29410 CCAATTCGTC
Statistics
Matches: 144, Mismatches: 25, Indels: 9
0.81 0.14 0.05
Matches are distributed among these distances:
49 60 0.42
52 84 0.58
ACGTcount: A:0.33, C:0.17, G:0.26, T:0.24
Consensus pattern (52 bp):
AGCGACATTGGACTTAAAGATGACAAAGGCGCCAATATGTTGATTCAAGGCC
Found at i:29321 original size:101 final size:101
Alignment explanation
Indices: 29186--29408 Score: 365
Period size: 101 Copynumber: 2.2 Consensus size: 101
29176 ATATGCGGCT
* * *
29186 AGCGATATTGGACTTAAAGATAAAGGTGCTAATGTGCTGATTCAAGGCCAGCGACATTGGACTTA
1 AGCGATATTGGACCTAAAGATAAAGGTGCCAATGTGCTGATTCAAGGCCAACGACATTGGACTTA
29251 AAGATGACAAAGGCGCCAACATGTTGATTCAAGGCC
66 AAGATGACAAAGGCGCCAACATGTTGATTCAAGGCC
* * *
29287 AGCGATATTGGTCCTAAAGGTGAAGGTGCCAATGTGCTGATTCAAGGCCAACGACATTGGACTTA
1 AGCGATATTGGACCTAAAGATAAAGGTGCCAATGTGCTGATTCAAGGCCAACGACATTGGACTTA
* *
29352 AAGATGACAAAGGCGCCAATATGTTGATTCAAGGCT
66 AAGATGACAAAGGCGCCAACATGTTGATTCAAGGCC
*
29388 AGCGATATTGGACTTAAAGAT
1 AGCGATATTGGACCTAAAGAT
29409 GCCAATTCGT
Statistics
Matches: 111, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
101 111 1.00
ACGTcount: A:0.33, C:0.17, G:0.26, T:0.24
Consensus pattern (101 bp):
AGCGATATTGGACCTAAAGATAAAGGTGCCAATGTGCTGATTCAAGGCCAACGACATTGGACTTA
AAGATGACAAAGGCGCCAACATGTTGATTCAAGGCC
Found at i:39363 original size:42 final size:42
Alignment explanation
Indices: 39257--39370 Score: 174
Period size: 42 Copynumber: 2.7 Consensus size: 42
39247 AAGAGAAAGA
* * *
39257 AGAGAGAGGAGGGATGATAAGAGGAGAGGCAGGAGAGATAGT
1 AGAGAGAGGAGGGATGATAGGAGGAGAGACAGGAGAGATAAT
*
39299 AGAGATAGGAGGGATGATAGGAGGAGAGACAGGAGAGATAAT
1 AGAGAGAGGAGGGATGATAGGAGGAGAGACAGGAGAGATAAT
*
39341 AGAGAGAGGAGGGATGACAGGAGGAAGAGA
1 AGAGAGAGGAGGGATGATAGGAGG-AGAGA
39371 GAAGAAGATG
Statistics
Matches: 65, Mismatches: 6, Indels: 1
0.90 0.08 0.01
Matches are distributed among these distances:
42 60 0.92
43 5 0.08
ACGTcount: A:0.42, C:0.03, G:0.46, T:0.09
Consensus pattern (42 bp):
AGAGAGAGGAGGGATGATAGGAGGAGAGACAGGAGAGATAAT
Found at i:47466 original size:20 final size:20
Alignment explanation
Indices: 47438--47479 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
47428 TAAAAATCTA
* *
47438 AGGAGTTTATACGAGGTTAG
1 AGGAATTTATACAAGGTTAG
47458 AGGAATTTATACAAGGTTAG
1 AGGAATTTATACAAGGTTAG
47478 AG
1 AG
47480 TATAAATATG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.36, C:0.05, G:0.31, T:0.29
Consensus pattern (20 bp):
AGGAATTTATACAAGGTTAG
Found at i:50317 original size:78 final size:79
Alignment explanation
Indices: 50235--50410 Score: 205
Period size: 79 Copynumber: 2.2 Consensus size: 79
50225 TGGAGATAAA
* **
50235 AATGGGGTTGGAGTAT-CCTCGATGGTGAAAAATCAATA-TTTGGAAATAAAAATTGGG-TTAGA
1 AATGGGGTTGGAGTATCCCT-AATGGTGAAAAATCAATATTTTGGAAAT-AAAACCGGGATTAGA
* *
50297 GTATTCCCTCAAAAAT
64 GTATCCCCTCAAAAAC
* * *
50313 AATGGGATTAGAGTATCCCTAATGGTGAAAAATCGATATTTTGGAAATAAAACCGGGATTAGAGT
1 AATGGGGTTGGAGTATCCCTAATGGTGAAAAATCAATATTTTGGAAATAAAACCGGGATTAGAGT
***
50378 ATCCCCTTGGAAAC
66 ATCCCCTCAAAAAC
*
50392 AATGGGGTTGGAGTCTCCC
1 AATGGGGTTGGAGTATCCC
50411 CTCGAAAATA
Statistics
Matches: 81, Mismatches: 14, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
78 37 0.46
79 44 0.54
ACGTcount: A:0.35, C:0.13, G:0.24, T:0.28
Consensus pattern (79 bp):
AATGGGGTTGGAGTATCCCTAATGGTGAAAAATCAATATTTTGGAAATAAAACCGGGATTAGAGT
ATCCCCTCAAAAAC
Found at i:50530 original size:79 final size:79
Alignment explanation
Indices: 50395--50566 Score: 229
Period size: 79 Copynumber: 2.2 Consensus size: 79
50385 TGGAAACAAT
* * * * *
50395 GGGGTTGGAGTCTCCCCTCGAAAATAGCGGGGTTGCAGTATCTTCGATGGTAAAAAATTGATATT
1 GGGGTTGGAGTATCCCCTCAAAAATAACGGGGTTGCAGTATCGTCGATGGTAAAAAATTGAAATT
* *
50460 TTGAAAATAAAATC
66 TTCAAAATAAAAAC
* * *
50474 GGGGTTAGAGTATCCCCTCAAAAATAACGGGGTTGGAGTATCCGT-GATGGTGAAAAATTGAAAT
1 GGGGTTGGAGTATCCCCTCAAAAATAACGGGGTTGCAGTAT-CGTCGATGGTAAAAAATTGAAAT
50538 TTTCAAAATAAAAAC
65 TTTCAAAATAAAAAC
*
50553 GAGGTTGGAGTATC
1 GGGGTTGGAGTATC
50567 TCCGATGGTC
Statistics
Matches: 80, Mismatches: 12, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
79 78 0.98
80 2 0.03
ACGTcount: A:0.34, C:0.13, G:0.26, T:0.27
Consensus pattern (79 bp):
GGGGTTGGAGTATCCCCTCAAAAATAACGGGGTTGCAGTATCGTCGATGGTAAAAAATTGAAATT
TTCAAAATAAAAAC
Found at i:50565 original size:51 final size:50
Alignment explanation
Indices: 50499--50619 Score: 136
Period size: 51 Copynumber: 2.4 Consensus size: 50
50489 CCTCAAAAAT
* * * *
50499 AACGGGGTTGGAGTATCCGTGATGGTGAAAAATTGAAATTTTCA-AAATAAA
1 AACGAGGTTGGAGTATCC-CGATGGTCAAAAATCGAAATTTT-AGAAATAAA
*
50550 AACGAGGTTGGAGTATCTCCGATGGTCAAAAATCGATATTTTAGAAATAAA
1 AACGAGGTTGGAGTATC-CCGATGGTCAAAAATCGAAATTTTAGAAATAAA
** *
50601 AATAAGGTGGGAGTATCCC
1 AACGAGGTTGGAGTATCCC
50620 CTCAGAAATA
Statistics
Matches: 60, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
50 3 0.05
51 56 0.93
52 1 0.02
ACGTcount: A:0.38, C:0.11, G:0.25, T:0.26
Consensus pattern (50 bp):
AACGAGGTTGGAGTATCCCGATGGTCAAAAATCGAAATTTTAGAAATAAA
Found at i:50582 original size:130 final size:130
Alignment explanation
Indices: 50425--50696 Score: 323
Period size: 130 Copynumber: 2.1 Consensus size: 130
50415 AAAATAGCGG
* * * ** *
50425 GGTTGCAGTATCTTCGATGGTAAAAAATTGATATTTT-GAAA-ATAAAATCGGGGTTAGAGTATC
1 GGTTGGAGTATCTCCGATGGTAAAAAATCGATATTTTAGAAATA-AAAAT-AAGGTGAGAGTATC
* * *** *
50488 CCCTCAAAAATAACGGGGTTGGAGTATCCGTGATGGTGAAAAATTGAAATTTTCAAAATAAAAAC
64 CCCTCAAAAATAACAGGGTTAGAGTATCCCCAACGGTGAAAAATTGAAATTTTCAAAATAAAAAC
50553 GA
129 GA
* *
50555 GGTTGGAGTATCTCCGATGGTCAAAAATCGATATTTTAGAAATAAAAATAAGGTGGGAGTATCCC
1 GGTTGGAGTATCTCCGATGGTAAAAAATCGATATTTTAGAAATAAAAATAAGGTGAGAGTATCCC
* * * * ***
50620 CTCAGAAATAATAGGGTTAGAGTATCCCCAACGGTGAAAAATTGATATTTTGAAAATAAAGTTGA
66 CTCAAAAATAACAGGGTTAGAGTATCCCCAACGGTGAAAAATTGAAATTTTCAAAATAAAAACGA
50685 GGTTGGAGTATC
1 GGTTGGAGTATC
50697 CCCTCGCAAA
Statistics
Matches: 119, Mismatches: 21, Indels: 4
0.83 0.15 0.03
Matches are distributed among these distances:
130 109 0.92
131 9 0.08
132 1 0.01
ACGTcount: A:0.38, C:0.11, G:0.23, T:0.28
Consensus pattern (130 bp):
GGTTGGAGTATCTCCGATGGTAAAAAATCGATATTTTAGAAATAAAAATAAGGTGAGAGTATCCC
CTCAAAAATAACAGGGTTAGAGTATCCCCAACGGTGAAAAATTGAAATTTTCAAAATAAAAACGA
Found at i:50693 original size:79 final size:79
Alignment explanation
Indices: 50577--50761 Score: 203
Period size: 79 Copynumber: 2.3 Consensus size: 79
50567 TCCGATGGTC
* *
50577 AAAAATCGATATTTT-AGAAATAAAAATAAGGTGGGAGTATCCCCTCAG-AAATAATAGGGTTAG
1 AAAAATTGATATTTTGA-AAATAAAAATAAGGTGGGAGTATCCCCTC-GCAAATAACAGGGTTAG
*
50640 AGTATCCCCAACGGTG
64 AGTATCCCCAACGGTA
** * * *
50656 AAAAATTGATATTTTGAAAATAAAGTTGAGGTTGGAGTATCCCCTCGCAAATAACGGGGTTAGAG
1 AAAAATTGATATTTTGAAAATAAAAATAAGGTGGGAGTATCCCCTCGCAAATAACAGGGTTAGAG
* * *
50721 TGTCCTCAATGGTA
66 TATCCCCAACGGTA
* * *
50735 AAAAAATCATATTTTTGGAAATAAAAA
1 AAAAATTGATA-TTTTGAAAATAAAAA
50762 AAATCAATGA
Statistics
Matches: 87, Mismatches: 16, Indels: 5
0.81 0.15 0.05
Matches are distributed among these distances:
78 1 0.01
79 73 0.84
80 13 0.15
ACGTcount: A:0.41, C:0.12, G:0.21, T:0.27
Consensus pattern (79 bp):
AAAAATTGATATTTTGAAAATAAAAATAAGGTGGGAGTATCCCCTCGCAAATAACAGGGTTAGAG
TATCCCCAACGGTA
Found at i:65401 original size:29 final size:27
Alignment explanation
Indices: 65369--65472 Score: 122
Period size: 28 Copynumber: 3.7 Consensus size: 27
65359 CATCCTCCGT
65369 AATAAAAAAACAAAACAAAAAACAAAAA
1 AATAAAAAAACAAAA-AAAAAACAAAAA
65397 GAATAAAAAAACAAAAAAAACAA-AAAAA
1 -AATAAAAAAACAAAAAAAA-AACAAAAA
*
65425 ACA-AAAAATAAAAAAAAAACAAACAAAAA
1 A-ATAAAAA-AACAAAAAAA-AAACAAAAA
*
65454 AATAAAAAAACAACAAAAA
1 AATAAAAAAACAAAAAAAA
65473 GGGTCTGAAT
Statistics
Matches: 66, Mismatches: 3, Indels: 14
0.80 0.04 0.17
Matches are distributed among these distances:
27 7 0.11
28 30 0.45
29 29 0.44
ACGTcount: A:0.86, C:0.10, G:0.01, T:0.04
Consensus pattern (27 bp):
AATAAAAAAACAAAAAAAAAACAAAAA
Found at i:65406 original size:18 final size:18
Alignment explanation
Indices: 65372--65472 Score: 114
Period size: 18 Copynumber: 5.4 Consensus size: 18
65362 CCTCCGTAAT
65372 AAAAAAACAAAACAAAAAAC
1 AAAAAAA-AAAA-AAAAAAC
* *
65392 -AAAAAGAATAAAAAAAC
1 AAAAAAAAAAAAAAAAAC
*
65409 AAAAAAAACAAAAAAAAC
1 AAAAAAAAAAAAAAAAAC
*
65427 AAAAAATAAAAAAAAAAC
1 AAAAAAAAAAAAAAAAAC
65445 AAACAAAAAAATAAAAAAAC
1 AAA-AAAAAAA-AAAAAAAC
65465 AACAAAAA
1 AA-AAAAA
65473 GGGTCTGAAT
Statistics
Matches: 69, Mismatches: 8, Indels: 8
0.81 0.09 0.09
Matches are distributed among these distances:
17 7 0.10
18 36 0.52
19 11 0.16
20 14 0.20
21 1 0.01
ACGTcount: A:0.86, C:0.10, G:0.01, T:0.03
Consensus pattern (18 bp):
AAAAAAAAAAAAAAAAAC
Found at i:65413 original size:9 final size:9
Alignment explanation
Indices: 65372--65472 Score: 100
Period size: 9 Copynumber: 10.7 Consensus size: 9
65362 CCTCCGTAAT
65372 AAAAAAACA
1 AAAAAAACA
65381 AAACAAAA-A
1 AAA-AAAACA
65390 ACAAAAAGA-A
1 A-AAAAA-ACA
65400 TAAAAAAACA
1 -AAAAAAACA
65410 AAAAAAACA
1 AAAAAAACA
65419 AAAAAAACA
1 AAAAAAACA
65428 AAAAATAA-A
1 AAAAA-AACA
65437 AAAAAAACA
1 AAAAAAACA
*
65446 AACAAAAAAA
1 AA-AAAAACA
65456 TAAAAAAACA
1 -AAAAAAACA
65466 ACAAAAA
1 A-AAAAA
65473 GGGTCTGAAT
Statistics
Matches: 80, Mismatches: 2, Indels: 19
0.79 0.02 0.19
Matches are distributed among these distances:
8 2 0.03
9 42 0.52
10 33 0.41
11 3 0.04
ACGTcount: A:0.86, C:0.10, G:0.01, T:0.03
Consensus pattern (9 bp):
AAAAAAACA
Found at i:65429 original size:47 final size:47
Alignment explanation
Indices: 65372--65472 Score: 127
Period size: 47 Copynumber: 2.1 Consensus size: 47
65362 CCTCCGTAAT
* *
65372 AAAAAAACAAAACAA-AAAACAAAAAGAATA-AAAAAACA-AAAAAAACA
1 AAAAAAACAAAA-AATAAAAAAAAAACAA-ACAAAAAA-ATAAAAAAACA
65419 AAAAAAACAAAAAATAAAAAAAAAACAAACAAAAAAATAAAAAAACA
1 AAAAAAACAAAAAATAAAAAAAAAACAAACAAAAAAATAAAAAAACA
*
65466 ACAAAAA
1 AAAAAAA
65473 GGGTCTGAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
46 4 0.08
47 44 0.92
ACGTcount: A:0.86, C:0.10, G:0.01, T:0.03
Consensus pattern (47 bp):
AAAAAAACAAAAAATAAAAAAAAAACAAACAAAAAAATAAAAAAACA
Found at i:65472 original size:1 final size:1
Alignment explanation
Indices: 65372--65463 Score: 76
Period size: 1 Copynumber: 92.0 Consensus size: 1
65362 CCTCCGTAAT
* * * * * * * * *
65372 AAAAAAACAAAACAAAAAACAAAAAGAATAAAAAAACAAAAAAAACAAAAAAAACAAAAAATAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * *
65437 AAAAAAACAAACAAAAAAATAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAA
65464 CAACAAAAAG
Statistics
Matches: 67, Mismatches: 24, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
1 67 1.00
ACGTcount: A:0.87, C:0.09, G:0.01, T:0.03
Consensus pattern (1 bp):
A
Found at i:66828 original size:43 final size:43
Alignment explanation
Indices: 66780--67178 Score: 230
Period size: 49 Copynumber: 8.6 Consensus size: 43
66770 AACCAATGTT
*
66780 GCTGGCCTTGAATCAGCACATTGGCACTTTTAAGTCTAATATC
1 GCTGGCCTTGAATCAGCACATTGGCACTTTTAAGTCCAATATC
* *
66823 GCTGGCCTTGAATCAGCACACTGGCACCTTTAAGTCCAATATC
1 GCTGGCCTTGAATCAGCACATTGGCACTTTTAAGTCCAATATC
* * *
66866 GCTGGCCTTGAATCAGCATATTGGCACCTTGCCTTTAAGACCAATGTC
1 GCTGGCCTTGAATCAGCACATTGGCA-C-T---TTTAAGTCCAATATC
* * * *
66914 GCTGGCCTTTAATCAGCACATTGGAAC----GAGCCCAATATC
1 GCTGGCCTTGAATCAGCACATTGGCACTTTTAAGTCCAATATC
* * * * *
66953 GCTTAGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGACCGATGTC
1 GC-TGGCCTTGAATCAGCACATTGGCA----C-T-TTTAAGTCCAATATC
* * * *
67003 GTTGGCCTTAAATCAGCACATTAGCACCTTAACCATCTTTAAGTCCAATGTC
1 GCTGGCCTTGAATCAGCACATT-G--GC---A-C-T-TTTAAGTCCAATATC
* * *
67055 ACTGGCCTTGAATTAGCACATTGGCATGTTCATCTTTAAGTCCGATATC
1 GCTGGCCTTGAATCAGCACATTGGCA----C-T-TTTAAGTCCAATATC
* ** *
67104 GCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAAACCCAATGTC
1 GCTGGCCTTGAATCAGCACATTGGCA-C---T-TTT-AAGTCCAATATC
*
67153 GTTGGCCTTGAATCAGCACATTGGCA
1 GCTGGCCTTGAATCAGCACATTGGCA
67179 TTCTTCTCAT
Statistics
Matches: 279, Mismatches: 49, Indels: 50
0.74 0.13 0.13
Matches are distributed among these distances:
39 11 0.04
40 20 0.07
43 64 0.23
44 2 0.01
46 2 0.01
47 1 0.00
48 41 0.15
49 90 0.32
50 10 0.04
51 1 0.00
52 36 0.13
55 1 0.00
ACGTcount: A:0.25, C:0.26, G:0.19, T:0.30
Consensus pattern (43 bp):
GCTGGCCTTGAATCAGCACATTGGCACTTTTAAGTCCAATATC
Found at i:67017 original size:89 final size:87
Alignment explanation
Indices: 66858--67024 Score: 264
Period size: 89 Copynumber: 1.9 Consensus size: 87
66848 ACCTTTAAGT
*
66858 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGCCTTTAAGACCAATGTCGCTGGCCTT
1 CCAATATCGCTAGCCTTGAATCAGCATATTGGCACCTTGCCTTTAAGACCAATGTCGCTGGCCTT
*
66923 TAATCAGCACATTGGAACGAGC
66 AAATCAGCACATTGGAACGAGC
* *
66945 CCAATATCGCTTAGCCTTGAATCAGCATATTGGCACCTT-CATCTTTAAGACCGATGTCGTTGGC
1 CCAATATCGC-TAGCCTTGAATCAGCATATTGGCACCTTGC--CTTTAAGACCAATGTCGCTGGC
67009 CTTAAATCAGCACATT
63 CTTAAATCAGCACATT
67025 AGCACCTTAA
Statistics
Matches: 73, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
87 11 0.15
88 27 0.37
89 35 0.48
ACGTcount: A:0.26, C:0.27, G:0.19, T:0.29
Consensus pattern (87 bp):
CCAATATCGCTAGCCTTGAATCAGCATATTGGCACCTTGCCTTTAAGACCAATGTCGCTGGCCTT
AAATCAGCACATTGGAACGAGC
Found at i:67030 original size:49 final size:49
Alignment explanation
Indices: 66958--67273 Score: 265
Period size: 52 Copynumber: 6.3 Consensus size: 49
66948 ATATCGCTTA
* * *
66958 GCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGACCGATGTCGTTG
1 GCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGACCAATGTCGCTG
* * * *
67007 GCCTTAAATCAGCACATTAGCACCTTAACCATCTTTAAGTCCAATGTCACTG
1 GCCTTGAATCAGCACATTGGCACCTT---CATCTTTAAGACCAATGTCGCTG
* ** * * *
67059 GCCTTGAATTAGCACATTGGCATGTTCATCTTTAAGTCCGATATCGCTG
1 GCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGACCAATGTCGCTG
* * * *
67108 GCCTTGAATCAGCATATTGGCACCTT-GTCTTTAAAACCCAATGTCGTTG
1 GCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGA-CCAATGTCGCTG
* * * *
67157 GCCTTGAATCAGCACATTGGCATTCTTCTCATCTTCAAGTCTAATGTCGCTG
1 GCCTTGAATCAGCACATTGGCA--CCT-TCATCTTTAAGACCAATGTCGCTG
* * * * * * * *
67209 ACCGTGAATCAGTACATTGACATTCTTTACATCTTTAAGCCCAATATCGTTG
1 GCCTTGAATCAGCACATTGGCA--CCTT-CATCTTTAAGACCAATGTCGCTG
*
67261 GCCGTGAATCAGC
1 GCCTTGAATCAGC
67274 GTATTGGTCC
Statistics
Matches: 214, Mismatches: 44, Indels: 15
0.78 0.16 0.05
Matches are distributed among these distances:
48 7 0.03
49 95 0.44
51 3 0.01
52 103 0.48
53 6 0.03
ACGTcount: A:0.25, C:0.25, G:0.17, T:0.32
Consensus pattern (49 bp):
GCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGACCAATGTCGCTG
Found at i:67189 original size:101 final size:99
Alignment explanation
Indices: 66944--67273 Score: 290
Period size: 101 Copynumber: 3.3 Consensus size: 99
66934 TTGGAACGAG
* * * * *
66944 CCCAATATCGCTTAGCCTTGAATCAGCATATTGGCA-CCTTCATCTTTAAGACCGATGTCGTTGG
1 CCCAATGTCG-TTGGCCTTGAATCAGCACATTGGCATCCTTCATCTTTAAGTCCGATGTCGCTGG
* *
67008 CCTTAAATCAGCACATTAGCACCTTAACCATCTTTAAG
65 CCTTGAATCAGCACATTAGCACCTT-A--ATCTTTAAA
* ** * * *
67046 TCCAATGTCACTGGCCTTGAATTAGCACATTGGCAT-GTTCATCTTTAAGTCCGATATCGCTGGC
1 CCCAATGTCGTTGGCCTTGAATCAGCACATTGGCATCCTTCATCTTTAAGTCCGATGTCGCTGGC
* * *
67110 CTTGAATCAGCATATTGGCACCTT-GTCTTTAAAA
66 CTTGAATCAGCACATTAGCACCTTAATCTTT-AAA
* * **
67144 CCCAATGTCGTTGGCCTTGAATCAGCACATTGGCATTCTTCTCATCTTCAAGTCTAATGTCGCTG
1 CCCAATGTCGTTGGCCTTGAATCAGCACATTGGCA-TCCT-TCATCTTTAAGTCCGATGTCGCTG
* * * * *
67209 ACCGTGAATCAGTACATT-GACATTCTTTACATCTTTAAG
64 GCCTTGAATCAGCACATTAG-CA--CCTTA-ATCTTTAAA
* *
67248 CCCAATATCGTTGGCCGTGAATCAGC
1 CCCAATGTCGTTGGCCTTGAATCAGC
67274 GTATTGGTCC
Statistics
Matches: 184, Mismatches: 34, Indels: 18
0.78 0.14 0.08
Matches are distributed among these distances:
97 5 0.03
98 33 0.18
99 1 0.01
100 2 0.01
101 102 0.55
102 7 0.04
103 3 0.02
104 26 0.14
105 5 0.03
ACGTcount: A:0.25, C:0.26, G:0.17, T:0.32
Consensus pattern (99 bp):
CCCAATGTCGTTGGCCTTGAATCAGCACATTGGCATCCTTCATCTTTAAGTCCGATGTCGCTGGC
CTTGAATCAGCACATTAGCACCTTAATCTTTAAA
Found at i:72356 original size:26 final size:26
Alignment explanation
Indices: 72319--72371 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
72309 GGAATGGAGT
* *
72319 TTGGAGAGTAATGGAATAGTATTTTC
1 TTGGAGAATAATGAAATAGTATTTTC
72345 TTGGAGAATAATGAAATAGTATTTTC
1 TTGGAGAATAATGAAATAGTATTTTC
72371 T
1 T
72372 GAGTTTTTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.34, C:0.04, G:0.23, T:0.40
Consensus pattern (26 bp):
TTGGAGAATAATGAAATAGTATTTTC
Found at i:73167 original size:51 final size:50
Alignment explanation
Indices: 73056--73171 Score: 135
Period size: 51 Copynumber: 2.3 Consensus size: 50
73046 TTTCACAATT
* *
73056 TGTATCGATACATCCGGGGTTTTACCAAGATGTATCGATACATCTTTCAT
1 TGTATCGATACATTCGGGGTTTTACCAAGATGTATCGATACATCTTTCAA
* * * * * *
73106 TGTTTTGATACATTCTGGGTTTTAACCTAGATGTATTGATACAT-TTCTTAA
1 TGTATCGATACATTCGGGGTTTT-ACCAAGATGTATCGATACATCTT-TCAA
73157 TGTATCGATACATTC
1 TGTATCGATACATTC
73172 ACGCATTTTT
Statistics
Matches: 54, Mismatches: 10, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
50 21 0.39
51 33 0.61
ACGTcount: A:0.26, C:0.16, G:0.16, T:0.41
Consensus pattern (50 bp):
TGTATCGATACATTCGGGGTTTTACCAAGATGTATCGATACATCTTTCAA
Found at i:75579 original size:78 final size:77
Alignment explanation
Indices: 75496--76223 Score: 621
Period size: 78 Copynumber: 9.3 Consensus size: 77
75486 TATTTCCGAG
* * * *
75496 GGATACTCCAATGCCGATTTTATTTTCAAAACATCGATTTTTCACAATCGGGCATACTCTAACCC
1 GGATACTCCAA-CCCGATTTTATTTTCAAAACATCAATTTTTCACAATCGGGGATACTCCAACCC
**
75561 TATTATTTTGAGA
65 CGTTATTTTGAGA
* * *
75574 GGATACTCCAACCCCAGTTTTA-TTTCAAAACA-CTAATTTTTCACAATTGGGGATACTCTAACC
1 GGATACTCCAACCCGA-TTTTATTTTCAAAACATC-AATTTTTCACAATCGGGGATACTCCAACC
** *
75637 CCTGTTATTTCCAAA
64 CC-GTTATTTTGAGA
* * * * *
75652 GAGATACTTCAACTCTAGTTTTATTTCCAAAACAGT-AATTTTTCACAATTGGGGATACTCCAAC
1 G-GATACTCCAACCCGA-TTTTATTTTCAAAACA-TCAATTTTTCACAATCGGGGATACTCCAAC
** *
75716 CCTATTATTTCTAAG-
63 CCCGTTATTT-TGAGA
** ** *
75731 GGATACTTAAACCTTAGTTTTATTTTCAAAACA-CTAA-TTTTCATAATCGGGGATACTCCAACC
1 GGATACTCCAACCCGA-TTTTATTTTCAAAACATC-AATTTTTCACAATCGGGGATACTCCAACC
*
75794 CCGTTATTTTCGAGG
64 CCGTTATTTT-GAGA
* * ** * *
75809 GGATACTCCAACCTCAATTTTATTTCCAAAACATTGATTTTTCACAATCGGGGATACTCTAACCT
1 GGATACTCCAACC-CGATTTTATTTTCAAAACATCAATTTTTCACAATCGGGGATACTCCAACCC
*
75874 CGTTATTTCTGAGG
65 CGTTATTT-TGAGA
* * * * *
75888 GGATACTCCAACCCCGATTTTATTTCCAAAACA-CTGATTTTTCACAGTTGGGAATACTCCAACC
1 GGATACTCCAA-CCCGATTTTATTTTCAAAACATC-AATTTTTCACAATCGGGGATACTCCAACC
* *
75952 CCATTATTTCT-AAA
64 CCGTTATTT-TGAGA
* * * * * * * * * *
75966 GGGATATTGCAACCCCAGTTTATTTTTAGAACACCAATTTTTCGCAATCGGGGATATTCTAACCC
1 -GGATACTCCAACCCGATTTTATTTTCAAAACATCAATTTTTCACAATCGGGGATACTCCAACCC
*
76031 CGTTATTTTTTA-A
65 CGTTA-TTTTGAGA
*
76044 GGATACTCCAACCCCGATTTTATTTTCAAAACATCAATTTTCCACAATCGGGGATACTCCAACCC
1 GGATACTCCAA-CCCGATTTTATTTTCAAAACATCAATTTTTCACAATCGGGGATACTCCAACCC
*
76109 CGTTATTTTTTAG-
65 CGTTA-TTTTGAGA
* * * ** * *
76122 GGATACTCCAACTTCGATTTTATTTCCAAAAAATTGATTTTTCACAATCGGGGATACTCCGAGCC
1 GGATACTCCAAC-CCGATTTTATTTTCAAAACATCAATTTTTCACAATCGGGGATACTCCAACCC
76187 CGTTATTTTCGAGA
65 CGTTATTTT-GAGA
* *
76201 GGATACTCAAACCCCAATTTTAT
1 GGATACTCCAA-CCCGATTTTAT
76224 CTCCAAAGTC
Statistics
Matches: 535, Mismatches: 87, Indels: 55
0.79 0.13 0.08
Matches are distributed among these distances:
76 2 0.00
77 87 0.16
78 246 0.46
79 157 0.29
80 43 0.08
ACGTcount: A:0.29, C:0.23, G:0.13, T:0.35
Consensus pattern (77 bp):
GGATACTCCAACCCGATTTTATTTTCAAAACATCAATTTTTCACAATCGGGGATACTCCAACCCC
GTTATTTTGAGA
Found at i:75710 original size:157 final size:156
Alignment explanation
Indices: 75513--76223 Score: 717
Period size: 157 Copynumber: 4.5 Consensus size: 156
75503 CCAATGCCGA
* * * *
75513 TTTTATTTTCAAAACATCGATTTTTCACAATCGGGCATACTCTAACCCTATTATTTTGAGAGGAT
1 TTTTATTTCCAAAACATTGATTTTTCACAATCGGGGATACTCTAACCCTGTTATTTTGAGAGGAT
* *
75578 ACTCCAACCCCAGTTTTATTTCAAAACACTAATTTTTCACAATTGGGGATACTCTAACCCCTGTT
66 ACTCCAACCCCAGTTTTATTTCAAAACACTAATTTTTCACAATCGGGGATACTCCAACCCC-GTT
* *
75643 ATTTCCAAAGAGATACTTCAACTCTAG
130 ATTTCCAAAGGGATACTCCAACTCTAG
* * * * * *
75670 TTTTATTTCCAAAACAGTAATTTTTCACAATTGGGGATACTCCAACCCTATTATTTCTAAG-GGA
1 TTTTATTTCCAAAACATTGATTTTTCACAATCGGGGATACTCTAACCCTGTTATTT-TGAGAGGA
** ** *
75734 TACTTAAACCTTAGTTTTATTTTCAAAACACTAA-TTTTCATAATCGGGGATACTCCAACCCCGT
65 TACTCCAACCCCAGTTTTA-TTTCAAAACACTAATTTTTCACAATCGGGGATACTCCAACCCCGT
* * * *
75798 TATTTTCGAGGGGATACTCCAAC-CTCAA
129 TATTTCCAAAGGGATACTCCAACTCT-AG
*
75826 TTTTATTTCCAAAACATTGATTTTTCACAATCGGGGATACTCTAA-CCTCGTTATTTCTGAGGGG
1 TTTTATTTCCAAAACATTGATTTTTCACAATCGGGGATACTCTAACCCT-GTTATTT-TGAGAGG
* * * *
75890 ATACTCCAACCCC-GATTTTATTTCCAAAACACTGATTTTTCACAGTTGGGAATACTCCAACCCC
64 ATACTCCAACCCCAG-TTTTATTT-CAAAACACTAATTTTTCACAATCGGGGATACTCCAACCCC
* * * * * *
75954 ATTATTTCTAAAGGGATATTGCAACCCCAG
127 GTTATTTCCAAAGGGATACTCCAACTCTAG
** * *** * * * *
75984 -TTTATTTTTAGAACACCAATTTTTCGCAATCGGGGATATTCTAACCCCGTTATTTTTTA-AGGA
1 TTTTATTTCCAAAACATTGATTTTTCACAATCGGGGATACTCTAACCCTGTTA-TTTTGAGAGGA
*
76047 TACTCCAACCCC-GATTTTATTTTCAAAACA-TCAATTTTCCACAATCGGGGATACTCCAACCCC
65 TACTCCAACCCCAG-TTTTA-TTTCAAAACACT-AATTTTTCACAATCGGGGATACTCCAACCCC
*** *
76110 GTTATTT-TTTAGGGATACTCCAACT-TCG
127 GTTATTTCCAAAGGGATACTCCAACTCTAG
* * *
76138 ATTTTATTTCCAAAAAATTGATTTTTCACAATCGGGGATACTCCGAGCCC-GTTATTTTCGAGAG
1 -TTTTATTTCCAAAACATTGATTTTTCACAATCGGGGATACT-CTAACCCTGTTATTTT-GAGAG
* *
76202 GATACTCAAACCCCAATTTTAT
63 GATACTCCAACCCCAGTTTTAT
76224 CTCCAAAGTC
Statistics
Matches: 452, Mismatches: 83, Indels: 39
0.79 0.14 0.07
Matches are distributed among these distances:
154 1 0.00
155 23 0.05
156 174 0.38
157 188 0.42
158 65 0.14
159 1 0.00
ACGTcount: A:0.29, C:0.23, G:0.13, T:0.35
Consensus pattern (156 bp):
TTTTATTTCCAAAACATTGATTTTTCACAATCGGGGATACTCTAACCCTGTTATTTTGAGAGGAT
ACTCCAACCCCAGTTTTATTTCAAAACACTAATTTTTCACAATCGGGGATACTCCAACCCCGTTA
TTTCCAAAGGGATACTCCAACTCTAG
Found at i:75911 original size:235 final size:233
Alignment explanation
Indices: 75513--76181 Score: 808
Period size: 235 Copynumber: 2.8 Consensus size: 233
75503 CCAATGCCGA
* * * **
75513 TTTTATTTTCAAAACATCGATTTTTCACAATCGGGCATACTCTAACCCTATTATTTTGAGAGGAT
1 TTTTATTTTCAAAACA-CCAATTTTCACAATCGGGGATACTCTAACCCCGTTATTTTGAGAGGAT
* * *
75578 ACTCCAACCCCAGTTTTATTTCAAAACACTAATTTTTCACAATTGGGGATACTCTAACCCCTGTT
65 ACTCCAACCCCAATTTTATTTCAAAACATTAATTTTTCACAATCGGGGATACTCTAACCCC-GTT
* * * * * *
75643 ATTTCCAAAGAGATACTTCAA-CTCTAGTTTTATTTCCAAAACAGTAATTTTTCACAATTGGGGA
129 ATTT-CTAAGGGATACTCCAACCTCGA-TTTTATTTCCAAAACACTGATTTTTCACAATTGGGGA
* **
75707 TACTCCAACCCTATTATTTCT-AAGGGATACTT-AAACCTTAG
192 TACTCCAACCCCATTATTTCTAAAGGGATA-TTGAAACCCCAG
* * * *
75748 TTTTATTTTCAAAACACTAATTTTCATAATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGAT
1 TTTTATTTTCAAAACACCAATTTTCACAATCGGGGATACTCTAACCCCGTTATTTT-GAGAGGAT
* * *
75813 ACTCCAACCTCAATTTTATTTCCAAAACATTGATTTTTCACAATCGGGGATACTCTAACCTCGTT
65 ACTCCAACCCCAATTTTATTT-CAAAACATTAATTTTTCACAATCGGGGATACTCTAACCCCGTT
* * * *
75878 ATTTCTGAGGGGATACTCCAACCCCGATTTTATTTCCAAAACACTGATTTTTCACAGTTGGGAAT
129 ATTTCT-AAGGGATACTCCAACCTCGATTTTATTTCCAAAACACTGATTTTTCACAATTGGGGAT
*
75943 ACTCCAACCCCATTATTTCTAAAGGGATATTGCAACCCCAG
193 ACTCCAACCCCATTATTTCTAAAGGGATATTGAAACCCCAG
* * * * *
75984 -TTTATTTTTAGAACACCAATTTTTCGCAATCGGGGATATTCTAACCCCGTTATTTTTTA-AGGA
1 TTTTATTTTCAAAACACCAA-TTTTCACAATCGGGGATACTCTAACCCCGTTA-TTTTGAGAGGA
* * * *
76047 TACTCCAACCCCGATTTTATTTTCAAAACATCAATTTTCCACAATCGGGGATACTCCAACCCCGT
64 TACTCCAACCCCAATTTTA-TTTCAAAACATTAATTTTTCACAATCGGGGATACTCTAACCCCGT
* * * * * *
76112 TATTTTTTAGGGATACTCCAACTTCGATTTTATTTCCAAAAAATTGATTTTTCACAATCGGGGAT
128 TATTTCTAAGGGATACTCCAACCTCGATTTTATTTCCAAAACACTGATTTTTCACAATTGGGGAT
76177 ACTCC
193 ACTCC
76182 GAGCCCGTTA
Statistics
Matches: 371, Mismatches: 54, Indels: 19
0.84 0.12 0.04
Matches are distributed among these distances:
234 88 0.24
235 194 0.52
236 85 0.23
237 4 0.01
ACGTcount: A:0.29, C:0.23, G:0.12, T:0.35
Consensus pattern (233 bp):
TTTTATTTTCAAAACACCAATTTTCACAATCGGGGATACTCTAACCCCGTTATTTTGAGAGGATA
CTCCAACCCCAATTTTATTTCAAAACATTAATTTTTCACAATCGGGGATACTCTAACCCCGTTAT
TTCTAAGGGATACTCCAACCTCGATTTTATTTCCAAAACACTGATTTTTCACAATTGGGGATACT
CCAACCCCATTATTTCTAAAGGGATATTGAAACCCCAG
Found at i:76021 original size:313 final size:312
Alignment explanation
Indices: 75485--76230 Score: 925
Period size: 313 Copynumber: 2.4 Consensus size: 312
75475 ATTCATGTTT
* * * * *
75485 TTATTTCCGAGGGATACTCCAATGC-CGATTTTATTTTCAAAACATCGATTTTTCACAATCGGGC
1 TTATTTTCGAGGGATACTCCAA-CCTCGATTTTATTTCCAAAACATTGATTTTTCACAATCGGGG
*
75549 ATACTCTAACCCTATTATTTTGAGAGGATACTCCAACCCCAGTTTTATTT-CAAAACACTAATTT
65 ATACTCTAACCC-GTTATTTTGAGAGGATACTCCAACCCCA-TTTTATTTCCAAAACACTAATTT
* * * * *
75613 TTCACAATTGGGGATACTCTAACCCCTGTTATTTCCAAAGAGATACTTCAACTCTAGTTTTATTT
128 TTCACAATTGGGAATACTCCAACCCCTATTATTTCCAAAGAGATACTTCAACCCCAGTTTTATTT
** * * *
75678 CCAAAACAGTAATTTTTCACAATTGGGGATACTCCAACCCTATTA-TTTCTAAGGGATACTTAAA
193 CCAAAACACCAATTTTTCACAATCGGGGATACTCCAACCCCATTATTTTCTAA-GGATACTCAAA
* *
75742 CCTTAG-TTTTATTTTCAAAACA-CTAATTTT-CATAATCGGGGATACTCCAACCCCG
257 CC-CAGATTTTATTTTCAAAACATC-AATTTTCCACAATCGGGGATACTCCAACCCCG
*
75797 TTATTTTCGAGGGGATACTCCAACCTCAATTTTATTTCCAAAACATTGATTTTTCACAATCGGGG
1 TTATTTTCGA-GGGATACTCCAACCTCGATTTTATTTCCAAAACATTGATTTTTCACAATCGGGG
* *
75862 ATACTCTAACCTCGTTATTTCTGAGGGGATACTCCAACCCCGATTTTATTTCCAAAACACTGATT
65 ATACTCTAACC-CGTTATTT-TGAGAGGATACTCCAACCCC-ATTTTATTTCCAAAACACTAATT
* * *
75927 TTTCACAGTTGGGAATACTCCAACCCC-ATTATTTCTAAAGGGATA-TTGCAACCCCAG-TTTAT
127 TTTCACAATTGGGAATACTCCAACCCCTATTATTTCCAAAGAGATACTT-CAACCCCAGTTTTAT
** * * * * * * *
75989 TTTTAGAACACCAATTTTTCGCAATCGGGGATATTCTAACCCCGTTATTTTTTAAGGATACTCCA
191 TTCCAAAACACCAATTTTTCACAATCGGGGATACTCCAACCCCATTATTTTCTAAGGATACTCAA
*
76054 ACCCCGATTTTATTTTCAAAACATCAATTTTCCACAATCGGGGATACTCCAACCCCG
256 ACCCAGATTTTATTTTCAAAACATCAATTTTCCACAATCGGGGATACTCCAACCCCG
** * *
76111 TTATTTTTTAGGGATACTCCAACTTCGATTTTATTTCCAAAAAATTGATTTTTCACAATCGGGGA
1 TTATTTTCGAGGGATACTCCAACCTCGATTTTATTTCCAAAACATTGATTTTTCACAATCGGGGA
* * * *
76176 TACTCCGAGCCCGTTATTTTCGAGAGGATACTCAAACCCCAATTTTATCTCCAAA
66 TACT-CTAACCCGTTATTTT-GAGAGGATACTCCAACCCC-ATTTTATTTCCAAA
76231 GTCTTAAACT
Statistics
Matches: 376, Mismatches: 45, Indels: 25
0.84 0.10 0.06
Matches are distributed among these distances:
312 12 0.03
313 234 0.62
314 93 0.25
315 37 0.10
ACGTcount: A:0.29, C:0.23, G:0.13, T:0.35
Consensus pattern (312 bp):
TTATTTTCGAGGGATACTCCAACCTCGATTTTATTTCCAAAACATTGATTTTTCACAATCGGGGA
TACTCTAACCCGTTATTTTGAGAGGATACTCCAACCCCATTTTATTTCCAAAACACTAATTTTTC
ACAATTGGGAATACTCCAACCCCTATTATTTCCAAAGAGATACTTCAACCCCAGTTTTATTTCCA
AAACACCAATTTTTCACAATCGGGGATACTCCAACCCCATTATTTTCTAAGGATACTCAAACCCA
GATTTTATTTTCAAAACATCAATTTTCCACAATCGGGGATACTCCAACCCCG
Found at i:77350 original size:22 final size:20
Alignment explanation
Indices: 77300--77356 Score: 80
Period size: 20 Copynumber: 2.8 Consensus size: 20
77290 CAAAAACCCA
77300 AAATGTATCGATACAATGAT
1 AAATGTATCGATACAATGAT
77320 AAATGTATCGATACAATTG-T
1 AAATGTATCGATACAA-TGAT
77340 AAGCATGTATCGATACA
1 AA--ATGTATCGATACA
77357 TTTACTTATG
Statistics
Matches: 34, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
20 19 0.56
21 2 0.06
22 13 0.38
ACGTcount: A:0.42, C:0.12, G:0.16, T:0.30
Consensus pattern (20 bp):
AAATGTATCGATACAATGAT
Found at i:78060 original size:72 final size:73
Alignment explanation
Indices: 77970--78106 Score: 204
Period size: 72 Copynumber: 1.9 Consensus size: 73
77960 AAGTAAATAG
* * * * *
77970 GTGCCACTAACTTGTGTGGGTTTTAAGAGAAAAAGAAAAGGAGAAAGGCGTC-TGCTCTTTGAAG
1 GTGCCACCAACTTATGTGGGCTTTAAAAGAAAAAGAAAAGGAGAAAGACGTCTTGCTCTTTGAAG
78034 ACTAAAAA
66 ACTAAAAA
* *
78042 GTGCCACCAACTTATGTGGGCTTTAAAAGAAAAAGAAAAGGAGAGAGATGTCTTGCTCTTTGAAG
1 GTGCCACCAACTTATGTGGGCTTTAAAAGAAAAAGAAAAGGAGAAAGACGTCTTGCTCTTTGAAG
78107 GGCTTTAAAA
Statistics
Matches: 57, Mismatches: 7, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
72 45 0.79
73 12 0.21
ACGTcount: A:0.36, C:0.13, G:0.26, T:0.24
Consensus pattern (73 bp):
GTGCCACCAACTTATGTGGGCTTTAAAAGAAAAAGAAAAGGAGAAAGACGTCTTGCTCTTTGAAG
ACTAAAAA
Found at i:78227 original size:61 final size:59
Alignment explanation
Indices: 78157--78338 Score: 168
Period size: 58 Copynumber: 3.1 Consensus size: 59
78147 TGAAGACAAC
* * * *
78157 AAGGTGCCACCAGTTTGTGTGGGCTTTTAAAAGAAAAGATGTCCTACTCTTTGAGGACTAA
1 AAGGTGCCACCAGCTTATATAGGCTTTT-AAAGAAAAG-TGTCCTACTCTTTGAGGACTAA
* * * *
78218 AAGGCGCCACTAGCTTATATAGGCTTTTAAAGGAAAGTGTCCTACTCTTTGAGGACTAG
1 AAGGTGCCACCAGCTTATATAGGCTTTTAAAGAAAAGTGTCCTACTCTTTGAGGACTAA
** * ** * * * * * *
78277 AAGGTGCCAAAAAC-TACGTGGGTTTTTAAAGAAAAATGTCCTATTTTTTGAGGACTAG
1 AAGGTGCCACCAGCTTATATAGGCTTTTAAAGAAAAGTGTCCTACTCTTTGAGGACTAA
78335 AAGG
1 AAGG
78339 GGCTTTAAAA
Statistics
Matches: 101, Mismatches: 20, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
58 40 0.40
59 31 0.31
60 8 0.08
61 22 0.22
ACGTcount: A:0.31, C:0.15, G:0.24, T:0.29
Consensus pattern (59 bp):
AAGGTGCCACCAGCTTATATAGGCTTTTAAAGAAAAGTGTCCTACTCTTTGAGGACTAA
Found at i:91930 original size:79 final size:80
Alignment explanation
Indices: 91785--91961 Score: 234
Period size: 79 Copynumber: 2.2 Consensus size: 80
91775 TCGAGATAAA
* * * ** **
91785 AATAGGGTTGGAGTAT-TCTCGATGGTGAAAAATCGATATTTTGGAAATGAAATCGGGGTTGGAG
1 AATAGGGTTGGAGTATCCCTCGATGGTGAAAAATCGATATTTTAGAAATGAAAACAAGGTTAAAG
91849 TATCCCCTCGAAAAC
66 TATCCCCTCGAAAAC
*
91864 AATAGGGTCGGAGTATCCCT-GATGGTGAAAAATCGATATTTTAGAAACT-AAAACAAGGTTAAA
1 AATAGGGTTGGAGTATCCCTCGATGGTGAAAAATCGATATTTTAGAAA-TGAAAACAAGGTTAAA
91927 GTATCCCCTCGAAAAC
65 GTATCCCCTCGAAAAC
* *
91943 AACAAGGTTGGAGTATCCC
1 AATAGGGTTGGAGTATCCC
91962 CTCAAAAATA
Statistics
Matches: 85, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
79 82 0.96
80 3 0.04
ACGTcount: A:0.35, C:0.15, G:0.24, T:0.25
Consensus pattern (80 bp):
AATAGGGTTGGAGTATCCCTCGATGGTGAAAAATCGATATTTTAGAAATGAAAACAAGGTTAAAG
TATCCCCTCGAAAAC
Found at i:91950 original size:28 final size:28
Alignment explanation
Indices: 91915--91969 Score: 83
Period size: 28 Copynumber: 2.0 Consensus size: 28
91905 TAGAAACTAA
*
91915 AACAAGGTTAAAGTATCCCCTCGAAAAC
1 AACAAGGTTAAAGTATCCCCTCAAAAAC
**
91943 AACAAGGTTGGAGTATCCCCTCAAAAA
1 AACAAGGTTAAAGTATCCCCTCAAAAA
91970 TAATGGGGTT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.42, C:0.24, G:0.16, T:0.18
Consensus pattern (28 bp):
AACAAGGTTAAAGTATCCCCTCAAAAAC
Found at i:92003 original size:106 final size:106
Alignment explanation
Indices: 91841--92068 Score: 289
Period size: 106 Copynumber: 2.1 Consensus size: 106
91831 ATGAAATCGG
* * *
91841 GGTTGGAGTATCCCCTCGAAAACAATAGGGTCGGAGTATCCCTGATGGTGAAAAATCGATATTTT
1 GGTTGGAGTATCCCCTCAAAAACAATAGGGTCGGAGCATCCCTGATGGTGAAAAATCAATATTTT
*
91906 AGAAACTAAAACA-AGGTTAAAGTATCCCCTCGAAAACAACAA
66 AGAAA-TAAAA-AGAGGTTAAAGTATCCCCTCAAAAACAACAA
* * * *
91948 GGTTGGAGTATCCCCTCAAAAATAATGGGGT-TGAGCATCCCTGATGGTGCAAAATCAATATTTT
1 GGTTGGAGTATCCCCTCAAAAACAATAGGGTCGGAGCATCCCTGATGGTGAAAAATCAATATTTT
* * ** *
92012 GGAAATAAAAATGGGGTTGGAGTATCCCCTCAAAAATAACAA
66 AGAAATAAAAA-GAGGTTAAAGTATCCCCTCAAAAACAACAA
*
92054 TGTTGGAGTATCCCC
1 GGTTGGAGTATCCCC
92069 AACGATGAAA
Statistics
Matches: 105, Mismatches: 14, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
104 1 0.01
105 5 0.05
106 71 0.68
107 28 0.27
ACGTcount: A:0.36, C:0.18, G:0.22, T:0.25
Consensus pattern (106 bp):
GGTTGGAGTATCCCCTCAAAAACAATAGGGTCGGAGCATCCCTGATGGTGAAAAATCAATATTTT
AGAAATAAAAAGAGGTTAAAGTATCCCCTCAAAAACAACAA
Found at i:92037 original size:78 final size:79
Alignment explanation
Indices: 91943--92452 Score: 432
Period size: 78 Copynumber: 6.6 Consensus size: 79
91933 CCTCGAAAAC
* * * * * *
91943 AACAAGGTTGGAGTATCCCCTCAAAAATAATGGGGTT-GAGCATCCCTGATGGTGCAAAATCAAT
1 AACAAGGTTGGAGTATCCCCTCAAAAATAACGGGGTTGGAGTATCCCTAACGGTGAAAAATCGAT
*
92007 ATTTTGGAAATAAA
66 ATTTTGAAAATAAA
*** *** * *
92021 AATGGGGTTGGAGTATCCCCTCAAAAATAACAATGTTGGAGTATCCCCAACGATGAAAAATCGAT
1 AACAAGGTTGGAGTATCCCCTCAAAAATAACGGGGTTGGAGTATCCCTAACGGTGAAAAATCGAT
*
92086 ATTTTG-------G
66 ATTTTGAAAATAAA
* * * *
92093 AACGAGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTAT-CCTGACAGTGAAAAATCGAT
1 AACAAGGTTGGAGTATCCCCTCAAAAATAACGGGGTTGGAGTATCCCTAACGGTGAAAAATCGAT
92157 ATTTTGAAAATAAA
66 ATTTTGAAAATAAA
* * * * * *
92171 AACAGGGTTGGAGTAT-CCCTCGAAAATAACAGCGTTGAAGTATCCCCAACGGTGAAAAATCGAT
1 AACAAGGTTGGAGTATCCCCTCAAAAATAACGGGGTTGGAGTATCCCTAACGGTGAAAAATCGAT
*
92235 ATTTTAAAAATAAA
66 ATTTTGAAAATAAA
* * * * * * * * * * *
92249 AACAGGGTTAGAATATCCCCTAAAAAATAATGGGATTGAAGTAT-TCTGATGGTGAAAAATTGAT
1 AACAAGGTTGGAGTATCCCCTCAAAAATAACGGGGTTGGAGTATCCCTAACGGTGAAAAATCGAT
*
92313 ATTTTGGAAATAAA
66 ATTTTGAAAATAAA
* * * * * * * * *
92327 AACAAGGTTGGAATATTCTCTTAAAAATAATGGGGTTAGAGTATCCC-AATGTTGAAAAATTGAT
1 AACAAGGTTGGAGTATCCCCTCAAAAATAACGGGGTTGGAGTATCCCTAACGGTGAAAAATCGAT
92391 ATTTTGAAAATAAA
66 ATTTTGAAAATAAA
* * ** ** * *
92405 ACCGAGGTTGGAGTATCTTCTCGGAAATAACAGGGTTGGAGTGTCCCT
1 AACAAGGTTGGAGTATCCCCTCAAAAATAACGGGGTTGGAGTATCCCT
92453 GATTATAAAA
Statistics
Matches: 346, Mismatches: 74, Indels: 23
0.78 0.17 0.05
Matches are distributed among these distances:
71 22 0.06
72 38 0.11
77 24 0.07
78 214 0.62
79 48 0.14
ACGTcount: A:0.38, C:0.14, G:0.22, T:0.27
Consensus pattern (79 bp):
AACAAGGTTGGAGTATCCCCTCAAAAATAACGGGGTTGGAGTATCCCTAACGGTGAAAAATCGAT
ATTTTGAAAATAAA
Found at i:92123 original size:72 final size:73
Alignment explanation
Indices: 92025--92244 Score: 234
Period size: 72 Copynumber: 3.0 Consensus size: 73
92015 AATAAAAATG
* **
92025 GGGTTGGAGTATCCCCTCAAAAATAACAATGTTGGAGTATCCCCAACGATGAAAAATCGATATTT
1 GGGTTGGAGTATCCCCTCGAAAATAACAGCGTTGGAGTATCCCCAACGATGAAAAATCGATATTT
*
92090 TG-GAAC-
66 TGAAAACA
* * **
92096 GAGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTAT-CCTGAC-AGTGAAAAATCGATAT
1 G-GGTTGGAGTATCCCCTCGAAAATAACAGCGTTGGAGTATCCCCAACGA-TGAAAAATCGATAT
92159 TTTGAAAATAAAAACA
64 TTTG------AAAACA
* *
92175 GGGTTGGAGTAT-CCCTCGAAAATAACAGCGTTGAAGTATCCCCAACGGTGAAAAATCGATATTT
1 GGGTTGGAGTATCCCCTCGAAAATAACAGCGTTGGAGTATCCCCAACGATGAAAAATCGATATTT
*
92239 TAAAAA
66 TGAAAA
92245 TAAAAACAGG
Statistics
Matches: 123, Mismatches: 14, Indels: 23
0.77 0.09 0.14
Matches are distributed among these distances:
70 1 0.01
71 23 0.19
72 39 0.32
77 24 0.20
78 35 0.28
79 1 0.01
ACGTcount: A:0.37, C:0.16, G:0.22, T:0.25
Consensus pattern (73 bp):
GGGTTGGAGTATCCCCTCGAAAATAACAGCGTTGGAGTATCCCCAACGATGAAAAATCGATATTT
TGAAAACA
Found at i:94920 original size:20 final size:20
Alignment explanation
Indices: 94895--94951 Score: 69
Period size: 20 Copynumber: 2.8 Consensus size: 20
94885 CAAAAACCTA
94895 AAATGTATTGATACAATGAT
1 AAATGTATTGATACAATGAT
** *
94915 AAATGTATCAATACAATTAT
1 AAATGTATTGATACAATGAT
94935 AAGCATGTATTGATACA
1 AA--ATGTATTGATACA
94952 TTTACTTATG
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
20 19 0.63
22 11 0.37
ACGTcount: A:0.46, C:0.09, G:0.12, T:0.33
Consensus pattern (20 bp):
AAATGTATTGATACAATGAT
Found at i:97039 original size:165 final size:164
Alignment explanation
Indices: 96725--97142 Score: 466
Period size: 165 Copynumber: 2.5 Consensus size: 164
96715 ATTCCTCTCA
* * * *
96725 TTTTCCAAAATATGAAGTTTTCAACTCCGTAAATTTTTTCGGGAGGATTTTGCTTGGTTTTTAAT
1 TTTTTCAAAATATG-AGTTTTCTACTCCGTAAATTTTTTTGGGAGGATTTTTCTTGGTTTTTAAT
* * * * * *
96790 TTTTAAAATTCTTCAAATATTATTATTTATGTCAAATTAATTTAGTTTTTAAAAATTCATTCATT
65 TTTTAAAATTCATCAAATATTATTATTTATGTCAAATAAAATCAGTTTTAAAAAATTAATTCATT
* * *
96855 TCCATAAATTTTGAATTTTT-TCTTGAAATTCTCTTT
130 TCCATAAATTTTAAATTTTTCT-TTGAAAATC-CATT
* *
96891 TTTTTCAAAATATAGAGTTTTCTACTCCGTAAATTTTTTTGGGGGGATTTTTCTTGGTTTTTGA-
1 TTTTTCAAAATAT-GAGTTTTCTACTCCGTAAATTTTTTTGGGAGGATTTTTCTTGGTTTTTAAT
* * *
96955 TTTTAAAATTCATCAAATATTATTATTTATTTTATATAAAATCAGTTTTAAAAAATTAATTCATT
65 TTTTAAAATTCATCAAATATTATTATTTATGTCAAATAAAATCAGTTTTAAAAAATTAATTCATT
* * *
97020 TTCATGAGTTTTAAATTTTTCTTTGAAAATCCATT
130 TCCATAAATTTTAAATTTTTCTTTGAAAATCCATT
* * * ** *
97055 TTTTTCTAAGAA-ACCGAGTTTTCTTCTCTGTAAA-TTTTTTGGGAAGGATTTTTCTTCATTTAA
1 TTTTTC-AA-AATA-TGAGTTTTCTACTCCGTAAATTTTTTTGGG-AGGATTTTTCTTGGTTT-T
* *
97118 TAATTTTTAGAATTCATCTAATATT
61 TAATTTTTAAAATTCATCAAATATT
97143 GTCATTGAAC
Statistics
Matches: 213, Mismatches: 31, Indels: 15
0.82 0.12 0.06
Matches are distributed among these distances:
164 18 0.08
165 114 0.54
166 61 0.29
167 20 0.09
ACGTcount: A:0.30, C:0.10, G:0.10, T:0.50
Consensus pattern (164 bp):
TTTTTCAAAATATGAGTTTTCTACTCCGTAAATTTTTTTGGGAGGATTTTTCTTGGTTTTTAATT
TTTAAAATTCATCAAATATTATTATTTATGTCAAATAAAATCAGTTTTAAAAAATTAATTCATTT
CCATAAATTTTAAATTTTTCTTTGAAAATCCATT
Found at i:104788 original size:16 final size:15
Alignment explanation
Indices: 104763--104804 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 15
104753 ATATATATAT
*
104763 AACAAAAAAAATAAC
1 AACAAAAAAAACAAC
104778 AACACAAAAAAACAAC
1 AACA-AAAAAAACAAC
104794 AA-AAAACAAAA
1 AACAAAA-AAAA
104805 AAAAATGTCT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
14 3 0.12
15 9 0.38
16 12 0.50
ACGTcount: A:0.81, C:0.17, G:0.00, T:0.02
Consensus pattern (15 bp):
AACAAAAAAAACAAC
Found at i:104791 original size:13 final size:13
Alignment explanation
Indices: 104761--104799 Score: 55
Period size: 12 Copynumber: 3.1 Consensus size: 13
104751 ATATATATAT
104761 ATAACAA-AAAAA
1 ATAACAACAAAAA
104773 ATAACAACACAAAA
1 ATAACAACA-AAAA
104787 A-AACAACAAAAA
1 ATAACAACAAAAA
104799 A
1 A
104800 CAAAAAAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
12 12 0.48
13 8 0.32
14 5 0.20
ACGTcount: A:0.79, C:0.15, G:0.00, T:0.05
Consensus pattern (13 bp):
ATAACAACAAAAA
Found at i:106212 original size:33 final size:32
Alignment explanation
Indices: 106164--106282 Score: 114
Period size: 33 Copynumber: 3.6 Consensus size: 32
106154 CTTTTTAAGG
*
106164 CCACACAAGTTGGTGGCATCCTTTCTCAAAAGC
1 CCACACAAGTCGGTGGCATCCTTTCTC-AAAGC
* *
106197 CTACACAAGTCGGTGGCATCATTTCTTTCAAAGC
1 CCACACAAGTCGGTGGCATCCTTTC--TCAAAGC
* * * *
106231 CCACGCAAGTTGGTGGCAACC-CTCTCCAAAGC
1 CCACACAAGTCGGTGGCATCCTTTCT-CAAAGC
* *
106263 CCACATAAGTCGATGGCATC
1 CCACACAAGTCGGTGGCATC
106283 TCCTTCTAAG
Statistics
Matches: 69, Mismatches: 14, Indels: 7
0.77 0.16 0.08
Matches are distributed among these distances:
31 1 0.01
32 21 0.30
33 24 0.35
34 21 0.30
35 2 0.03
ACGTcount: A:0.27, C:0.31, G:0.19, T:0.23
Consensus pattern (32 bp):
CCACACAAGTCGGTGGCATCCTTTCTCAAAGC
Found at i:106433 original size:59 final size:58
Alignment explanation
Indices: 106289--106440 Score: 223
Period size: 58 Copynumber: 2.6 Consensus size: 58
106279 CATCTCCTTC
* * *
106289 TAAGCCTAATATCGTTGGCCTTGAATCAACGCATTAGCAATTGTCAAATCTTCTTTTT
1 TAAGCCCAATATCGTTGGCCTTGAATCAGCACATTAGCAATTGTCAAATCTTCTTTTT
* * * *
106347 TAAGCCCAATGTAGTTGGCCTTGAATCAGCACATTAGCACTTGTCAAATCTTTTTTCTT
1 TAAGCCCAATATCGTTGGCCTTGAATCAGCACATTAGCAATTGTCAAATCTTCTTT-TT
*
106406 TAAGCCCAATATCGTTGGCCTTAAATCAGCACATT
1 TAAGCCCAATATCGTTGGCCTTGAATCAGCACATT
106441 GGTAACTGTC
Statistics
Matches: 83, Mismatches: 10, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
58 49 0.59
59 34 0.41
ACGTcount: A:0.28, C:0.22, G:0.14, T:0.36
Consensus pattern (58 bp):
TAAGCCCAATATCGTTGGCCTTGAATCAGCACATTAGCAATTGTCAAATCTTCTTTTT
Found at i:106532 original size:52 final size:53
Alignment explanation
Indices: 106402--106910 Score: 408
Period size: 52 Copynumber: 9.6 Consensus size: 53
106392 AAATCTTTTT
* * * * * ** *
106402 TCTTTAAGCCCAATATCGTTGGCCTTAAATCAGCACATTGG--TAAC-TGTCA
1 TCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCATATTGGCATCTCTTATCA
* * * * *
106452 TCTTTAAGTTCGATATTGTTGGCCTTGAATCAGCATATTGGCATC-CTTATCA
1 TCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCATATTGGCATCTCTTATCA
* * * *
106504 TCTTTAAGTCCAATGTCGCTGGCTTTGAATCAGCACATTGGCACCT-TTATAA
1 TCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCATATTGGCATCTCTTATCA
* * * * *
106556 TCTTTAAGTCCAATATCGCTAGCCTTGAATTAGTATATTGGCACTTCTATTATCA
1 TCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCATATTGGCA--TCTCTTATCA
* * * * *
106611 TGTTTAAGTCCAATGTCGCTAGCCTTGAATCAGCACATTAGCACCT-TTATCA
1 TCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCATATTGGCATCTCTTATCA
** * * *
106663 TCTTTAAGTCTGATATCGCTGGCCTTGAATCAACATATTGGCACTGCTATTATCA
1 TCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCATATTGGCA-T-CTCTTATCA
* * * * * *
106718 TGTTTAAATCTAATGTCGCTGGCATTGAATCAGCACATTGGCA-CAT-TTGTCA
1 TCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCATATTGGCATC-TCTTATCA
* * * * * * * *
106770 TCTTTAAGTCCGATATCACTAGCCTTAAAT-TGACATATTGGTACTTCTATTATCA
1 TCTTTAAGTCCAATGTCGCTGGCCTTGAATCAG-CATATTGG--CATCTCTTATCA
* * *
106825 TGTTTAAGTCCAATGTCGCTAGCCTTGAATCAGCATATTGGCAT-TCTTCTCA
1 TCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCATATTGGCATCTCTTATCA
* **
106877 TCTTCAAGTCCAATGTCATTGGCCTTGAATCAGC
1 TCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGC
106911 TCATTGTCAC
Statistics
Matches: 366, Mismatches: 76, Indels: 32
0.77 0.16 0.07
Matches are distributed among these distances:
50 35 0.10
51 2 0.01
52 194 0.53
53 5 0.01
54 6 0.02
55 123 0.34
56 1 0.00
ACGTcount: A:0.26, C:0.22, G:0.16, T:0.36
Consensus pattern (53 bp):
TCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCATATTGGCATCTCTTATCA
Found at i:106639 original size:107 final size:107
Alignment explanation
Indices: 106404--106867 Score: 553
Period size: 107 Copynumber: 4.4 Consensus size: 107
106394 ATCTTTTTTC
* * * * * * * * *
106404 TTTAAGCCCAATATCGTTGGCCTTAAATCAGCACATTGGTAAC--TGTCATCTTTAAGTTCGATA
1 TTTAAGTCCAATGTCGCTAGCCTTGAATCAGCACATTGGCACCTTTATCATCTTTAAGTCCGATA
* * * * *
106467 TTGTTGGCCTTGAATCAGCATATTGGCA--TC-CTTATCATC
66 TCGCTAGCCTTGAATCAGCATATTGGCACTTCTATTATCATG
* * * *
106506 TTTAAGTCCAATGTCGCTGGCTTTGAATCAGCACATTGGCACCTTTATAATCTTTAAGTCCAATA
1 TTTAAGTCCAATGTCGCTAGCCTTGAATCAGCACATTGGCACCTTTATCATCTTTAAGTCCGATA
* *
106571 TCGCTAGCCTTGAATTAGTATATTGGCACTTCTATTATCATG
66 TCGCTAGCCTTGAATCAGCATATTGGCACTTCTATTATCATG
* *
106613 TTTAAGTCCAATGTCGCTAGCCTTGAATCAGCACATTAGCACCTTTATCATCTTTAAGTCTGATA
1 TTTAAGTCCAATGTCGCTAGCCTTGAATCAGCACATTGGCACCTTTATCATCTTTAAGTCCGATA
* * *
106678 TCGCTGGCCTTGAATCAACATATTGGCACTGCTATTATCATG
66 TCGCTAGCCTTGAATCAGCATATTGGCACTTCTATTATCATG
* * * * * *
106720 TTTAAATCTAATGTCGCTGGCATTGAATCAGCACATTGGCACATTTGTCATCTTTAAGTCCGATA
1 TTTAAGTCCAATGTCGCTAGCCTTGAATCAGCACATTGGCACCTTTATCATCTTTAAGTCCGATA
* * * *
106785 TCACTAGCCTTAAAT-TGACATATTGGTACTTCTATTATCATG
66 TCGCTAGCCTTGAATCAG-CATATTGGCACTTCTATTATCATG
*
106827 TTTAAGTCCAATGTCGCTAGCCTTGAATCAGCATATTGGCA
1 TTTAAGTCCAATGTCGCTAGCCTTGAATCAGCACATTGGCA
106868 TTCTTCTCAT
Statistics
Matches: 307, Mismatches: 49, Indels: 7
0.85 0.13 0.02
Matches are distributed among these distances:
102 36 0.12
104 39 0.13
106 2 0.01
107 230 0.75
ACGTcount: A:0.27, C:0.21, G:0.16, T:0.36
Consensus pattern (107 bp):
TTTAAGTCCAATGTCGCTAGCCTTGAATCAGCACATTGGCACCTTTATCATCTTTAAGTCCGATA
TCGCTAGCCTTGAATCAGCATATTGGCACTTCTATTATCATG
Found at i:106880 original size:214 final size:212
Alignment explanation
Indices: 106449--106859 Score: 621
Period size: 214 Copynumber: 1.9 Consensus size: 212
106439 TTGGTAACTG
* * * * *
106449 TCATCTTTAAGT-TCGATATTGTTGGCCTTGAATCAGCATATTGGCATCCTTATCATCTTTAAGT
1 TCATCTTTAAGTCTCGATATCGCTGGCCTTGAATCAACATATTGGCATCATTATCATCTTTAAAT
* * *
106513 CCAATGTCGCTGGCTTTGAATCAGCACATTGGCACCTTTATAATCTTTAAGTCCAATATCGCTAG
66 CCAATGTCGCTGGCATTGAATCAGCACATTGGCACATTTATAATCTTTAAGTCCAATATCACTAG
* *
106578 CCTTGAATTAGTATATTGGCACTTCTATTATCATGTTTAAGTCCAATGTCGCTAGCCTTGAATCA
131 CCTTAAATTAGCATATTGGCACTTCTATTATCATGTTTAAGTCCAATGTCGCTAGCCTTGAATCA
106643 GCACATTAGCACCTTTA
196 GCACATTAGCACCTTTA
*
106660 TCATCTTTAAGTCT-GATATCGCTGGCCTTGAATCAACATATTGGCACTGCTATTATCATGTTTA
1 TCATCTTTAAGTCTCGATATCGCTGGCCTTGAATCAACATATTGGCA-T-C-ATTATCATCTTTA
* * * *
106724 AATCTAATGTCGCTGGCATTGAATCAGCACATTGGCACATTTGTCATCTTTAAGTCCGATATCAC
63 AATCCAATGTCGCTGGCATTGAATCAGCACATTGGCACATTTATAATCTTTAAGTCCAATATCAC
*
106789 TAGCCTTAAATT-GACATATTGGTACTTCTATTATCATGTTTAAGTCCAATGTCGCTAGCCTTGA
128 TAGCCTTAAATTAG-CATATTGGCACTTCTATTATCATGTTTAAGTCCAATGTCGCTAGCCTTGA
106853 ATCAGCA
192 ATCAGCA
106860 TATTGGCATT
Statistics
Matches: 179, Mismatches: 16, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
211 41 0.23
212 2 0.01
213 2 0.01
214 134 0.75
ACGTcount: A:0.26, C:0.21, G:0.16, T:0.36
Consensus pattern (212 bp):
TCATCTTTAAGTCTCGATATCGCTGGCCTTGAATCAACATATTGGCATCATTATCATCTTTAAAT
CCAATGTCGCTGGCATTGAATCAGCACATTGGCACATTTATAATCTTTAAGTCCAATATCACTAG
CCTTAAATTAGCATATTGGCACTTCTATTATCATGTTTAAGTCCAATGTCGCTAGCCTTGAATCA
GCACATTAGCACCTTTA
Found at i:111933 original size:13 final size:13
Alignment explanation
Indices: 111915--111942 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
111905 ATACAAAGAT
111915 CAATGTATCGATA
1 CAATGTATCGATA
111928 CAATGTATCGATA
1 CAATGTATCGATA
111941 CA
1 CA
111943 TTTAAGTAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.39, C:0.18, G:0.14, T:0.29
Consensus pattern (13 bp):
CAATGTATCGATA
Found at i:112029 original size:32 final size:32
Alignment explanation
Indices: 111988--112089 Score: 161
Period size: 32 Copynumber: 3.2 Consensus size: 32
111978 GCTTCGTAGC
111988 GATACATTGTATCGATACAACACTTATGTATT
1 GATACATTGTATCGATACAACACTTATGTATT
*
112020 GATACATTGTATCGATACAATACTTATGT-TT
1 GATACATTGTATCGATACAACACTTATGTATT
* *
112051 CGATACATTGTATCGATACAACACTTATATATC
1 -GATACATTGTATCGATACAACACTTATGTATT
112084 GATACA
1 GATACA
112090 GTTACTTGTT
Statistics
Matches: 64, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
31 2 0.03
32 61 0.95
33 1 0.02
ACGTcount: A:0.35, C:0.17, G:0.12, T:0.36
Consensus pattern (32 bp):
GATACATTGTATCGATACAACACTTATGTATT
Found at i:113042 original size:101 final size:100
Alignment explanation
Indices: 112875--113146 Score: 305
Period size: 101 Copynumber: 2.7 Consensus size: 100
112865 ACAATGTGTT
* * * * * ** ** *
112875 GATTCATGGCCAGCAACATTAGACTTGAAGA-AAAATGCCAATGTGCTGAGACAAGGCTAGCAAC
1 GATTCAAGGCCAACAATATTGGACTTAAAGACAAGGTGCCAATGTGCTGATTCAAGGCTAGCGAC
*
112939 ATTGGGCCTAGAAAT-GTTGAAGATGCCAATATGCC
66 ATTGGGCCTAAAAATGGTT-AAGATGCCAATATGCC
* *
112974 GATTCAAGGCCAACAATATTGGACTTAAAGATGAAGGTGCCAATGTGCTGATTCAAGGCCAGCGA
1 GATTCAAGGCCAACAATATTGGACTTAAAGA-CAAGGTGCCAATGTGCTGATTCAAGGCTAGCGA
* * * * **
113039 CATTGGTCTTAAAAATGGTTAAGGTGCCAATGTGTT
65 CATTGGGCCTAAAAATGGTTAAGATGCCAATATGCC
* * * *
113075 GATTCAAGGCCAGCGATATTGGACTTAAAGACAAGGTGCCAATATGCTGATTCAAGGCTAGCGAT
1 GATTCAAGGCCAACAATATTGGACTTAAAGACAAGGTGCCAATGTGCTGATTCAAGGCTAGCGAC
113140 ATTGGGC
66 ATTGGGC
113147 TTATGCCAAT
Statistics
Matches: 145, Mismatches: 25, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
99 26 0.18
100 36 0.25
101 80 0.55
102 3 0.02
ACGTcount: A:0.33, C:0.18, G:0.26, T:0.24
Consensus pattern (100 bp):
GATTCAAGGCCAACAATATTGGACTTAAAGACAAGGTGCCAATGTGCTGATTCAAGGCTAGCGAC
ATTGGGCCTAAAAATGGTTAAGATGCCAATATGCC
Found at i:113089 original size:52 final size:51
Alignment explanation
Indices: 112910--113149 Score: 229
Period size: 52 Copynumber: 4.8 Consensus size: 51
112900 TGAAGAAAAA
** * * * * * * *
112910 TGCCAATGTGCTGAGACAAGGCTAGCAACATTGGGCCTAGAAATGTTGAAGA
1 TGCCAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAAATGTT-AAGG
* * * * *
112962 TGCCAATATGCCGATTCAAGGCCAACAATATTGGACTTAAAGATG--AAGG
1 TGCCAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAAATGTTAAGG
* *
113011 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAAATGGTTAAGG
1 TGCCAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAAAT-GTTAAGG
* **
113063 TGCCAATGTGTTGATTCAAGGCCAGCGATATTGGACTT--AAA-GACAAGG
1 TGCCAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAAATGTTAAGG
* * *
113111 TGCCAATATGCTGATTCAAGGCTAGCGATATTGGGCTTA
1 TGCCAATGTGCTGATTCAAGGCCAGCGATATTGGACTTA
113150 TGCCAATGTG
Statistics
Matches: 156, Mismatches: 28, Indels: 11
0.80 0.14 0.06
Matches are distributed among these distances:
48 39 0.25
49 40 0.26
50 4 0.03
52 73 0.47
ACGTcount: A:0.31, C:0.17, G:0.26, T:0.25
Consensus pattern (51 bp):
TGCCAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAAATGTTAAGG
Found at i:113130 original size:48 final size:48
Alignment explanation
Indices: 112962--113303 Score: 279
Period size: 48 Copynumber: 7.4 Consensus size: 48
112952 ATGTTGAAGA
* * * * *
112962 TGCCAATATGCCGATTCAAGGCCAACAATATTGGACTTAAAGATGAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGTCTTAAAGA-CAAGG
* * **
113011 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAAATGGTTAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGTCTT--AAA--GACAAGG
* * *
113063 TGCCAATGTGTTGATTCAAGGCCAGCGATATTGGACTTAAAGACAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGTCTTAAAGACAAGG
* *
113111 TGCCAATATGCTGATTCAAGGCTAGCGATATTGGGCTT-------A--
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGTCTTAAAGACAAGG
* * *
113150 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAGAGACAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGTCTTAAAGACAAGG
* * *
113198 TGCCAATATGCTGATTTAAGGCCAACGATATTGGGCTT-------A--
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGTCTTAAAGACAAGG
* * * * *
113237 TGCCAATGTGCTGATTCAAGGCTAGCGACATTGGTTTTAGAGACAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGTCTTAAAGACAAGG
*
113285 TGCCAATATGATGATTCAA
1 TGCCAATATGCTGATTCAA
113304 TTGGGCTTAT
Statistics
Matches: 236, Mismatches: 35, Indels: 45
0.75 0.11 0.14
Matches are distributed among these distances:
39 65 0.28
41 2 0.01
46 2 0.01
48 89 0.38
49 32 0.14
50 3 0.01
51 3 0.01
52 39 0.17
53 1 0.00
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.27
Consensus pattern (48 bp):
TGCCAATATGCTGATTCAAGGCCAGCGATATTGGTCTTAAAGACAAGG
Found at i:113165 original size:39 final size:39
Alignment explanation
Indices: 113111--113270 Score: 158
Period size: 39 Copynumber: 3.9 Consensus size: 39
113101 AAAGACAAGG
* *
113111 TGCCAATATGCTGATTCAAGGCTAGCGATATTGGGCTTA
1 TGCCAATATGCTGATTCAAGGCCAGCGACATTGGGCTTA
* *
113150 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAGAGACAA
1 TGCCAATATGCTGATTCAAGGCCAGCGACATTGGGCTT-------A
* * *
113196 GGTGCCAATATGCTGATTTAAGGCCAACGATATTGGGCTTA
1 --TGCCAATATGCTGATTCAAGGCCAGCGACATTGGGCTTA
* *
113237 TGCCAATGTGCTGATTCAAGGCTAGCGACATTGG
1 TGCCAATATGCTGATTCAAGGCCAGCGACATTGG
113271 TTTTAGAGAC
Statistics
Matches: 98, Mismatches: 14, Indels: 18
0.75 0.11 0.14
Matches are distributed among these distances:
39 63 0.64
41 1 0.01
46 1 0.01
48 33 0.34
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.28
Consensus pattern (39 bp):
TGCCAATATGCTGATTCAAGGCCAGCGACATTGGGCTTA
Found at i:113209 original size:87 final size:87
Alignment explanation
Indices: 113063--113704 Score: 511
Period size: 87 Copynumber: 7.0 Consensus size: 87
113053 ATGGTTAAGG
* * * *
113063 TGCCAATGTGTTGATTCAAGGCCAGCGATATTGGACTTAAAGACAAGGTGCCAATATGCTGATTC
1 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAGAGACAAGGTGCCAATATGCTGATTC
*
113128 AAGGCTAGCGATATTGGGCTTA
66 AAGGCCAGCGATATTGGGCTTA
*
113150 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAGAGACAAGGTGCCAATATGCTGATTT
1 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAGAGACAAGGTGCCAATATGCTGATTC
*
113215 AAGGCCAACGATATTGGGCTTA
66 AAGGCCAGCGATATTGGGCTTA
* * *
113237 TGCCAATGTGCTGATTCAAGGCTAGCGACATTGGTTTTAGAGACAAGGTGCCAATATGATGATT-
1 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAGAGACAAGGTGCCAATATGCTGATTC
113301 --------C-A-ATTGGGCTTA
66 AAGGCCAGCGATATTGGGCTTA
*
113313 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTTTTAGAGACAAGGTGCCAATATGCTGATTC
1 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAGAGACAAGGTGCCAATATGCTGATTC
* * * *
113378 -AGGATCGGTGATATTGGACTTAAAGATGAAGA
66 AAGG-CCAGCGATATTGGGC-T-----T----A
113410 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATGACAAAGGTGCCAATATG-TC
1 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTT--AGA-GAC-AAGGTGCCAATATGCT-
* * *
113474 GATTCAGTTAGGACCAGTGATATTGGATTTAAAGATGAAGA
61 GATTCA---AGG-CCAGCGATATTGG-------GCT---TA
* * *
113515 TGCTAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATAAAGGTGCCAATATG-TCGAT
1 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAGAGA-CAAGGTGCCAATATGCT-GAT
* *
113579 TCAGTCAGGACCAGTGATATTGGACTTAAAGATGAAGA
64 TCA---AGG-CCAGCGATATTGGGC-T-----T----A
* * * * *
113617 TGCCAATGTGCTAATTCAAGGCCAGTGACATTGGTCTTAAAGATAAAGGTGCCAATATGCTAATT
1 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAGAGA-CAAGGTGCCAATATGCTGATT
113682 CAAGGCCAGCGATATTGGGCTTA
65 CAAGGCCAGCGATATTGGGCTTA
113705 AAGGTGCAAC
Statistics
Matches: 472, Mismatches: 37, Indels: 91
0.79 0.06 0.15
Matches are distributed among these distances:
76 72 0.15
77 1 0.00
78 1 0.00
86 1 0.00
87 147 0.31
88 2 0.00
92 1 0.00
93 1 0.00
96 1 0.00
97 39 0.08
98 14 0.03
99 6 0.01
100 4 0.01
101 19 0.04
102 105 0.22
103 3 0.01
105 53 0.11
109 1 0.00
111 1 0.00
ACGTcount: A:0.30, C:0.17, G:0.26, T:0.27
Consensus pattern (87 bp):
TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAGAGACAAGGTGCCAATATGCTGATTC
AAGGCCAGCGATATTGGGCTTA
Found at i:113353 original size:76 final size:76
Alignment explanation
Indices: 113227--113378 Score: 286
Period size: 76 Copynumber: 2.0 Consensus size: 76
113217 GGCCAACGAT
*
113227 ATTGGGCTTATGCCAATGTGCTGATTCAAGGCTAGCGACATTGGTTTTAGAGACAAGGTGCCAAT
1 ATTGGGCTTATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTTTTAGAGACAAGGTGCCAAT
113292 ATGATGATTCA
66 ATGATGATTCA
113303 ATTGGGCTTATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTTTTAGAGACAAGGTGCCAAT
1 ATTGGGCTTATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTTTTAGAGACAAGGTGCCAAT
*
113368 ATGCTGATTCA
66 ATGATGATTCA
113379 GGATCGGTGA
Statistics
Matches: 74, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
76 74 1.00
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.30
Consensus pattern (76 bp):
ATTGGGCTTATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTTTTAGAGACAAGGTGCCAAT
ATGATGATTCA
Found at i:113425 original size:49 final size:49
Alignment explanation
Indices: 113312--113707 Score: 350
Period size: 49 Copynumber: 7.9 Consensus size: 49
113302 AATTGGGCTT
* * ** * *
113312 ATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTTTTAGAGA-CAAG
1 ATGCCAATATGCTGATTCAAGGCCAGTGACATTGGACTTAAAGATGAAG
* * * *
113360 GTGCCAATATGCTGATTC-AGGATCGGTGATATTGGACTTAAAGATGAAG
1 ATGCCAATATGCTGATTCAAGG-CCAGTGACATTGGACTTAAAGATGAAG
* * *
113409 ATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATGACAAAG
1 ATGCCAATATGCTGATTCAAGGCCAGTGACATTGGACTTAAAGATG---AAG
* * *
113461 GTGCCAATATG-TCGATTCAGTTAGGACCAGTGATATTGGATTTAAAGATGAAG
1 ATGCCAATATGCT-GATTCA---AGG-CCAGTGACATTGGACTTAAAGATGAAG
* * * * *
113514 ATGCTAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATAAAG
1 ATGCCAATATGCTGATTCAAGGCCAGTGACATTGGACTTAAAGATGAAG
* *
113563 GTGCCAATATG-TCGATTCAGTCAGGACCAGTGATATTGGACTTAAAGATGAAG
1 ATGCCAATATGCT-GATTCA---AGG-CCAGTGACATTGGACTTAAAGATGAAG
* * * *
113616 ATGCCAATGTGCTAATTCAAGGCCAGTGACATTGGTCTTAAAGATAAAG
1 ATGCCAATATGCTGATTCAAGGCCAGTGACATTGGACTTAAAGATGAAG
* * * * *
113665 GTGCCAATATGCTAATTCAAGGCCAGCGATATTGGGCTTAAAG
1 ATGCCAATATGCTGATTCAAGGCCAGTGACATTGGACTTAAAG
113708 GTGCAACGGA
Statistics
Matches: 281, Mismatches: 49, Indels: 35
0.77 0.13 0.10
Matches are distributed among these distances:
47 3 0.01
48 32 0.11
49 136 0.48
50 9 0.03
51 1 0.00
52 21 0.07
53 54 0.19
54 2 0.01
55 3 0.01
56 20 0.07
ACGTcount: A:0.32, C:0.16, G:0.26, T:0.27
Consensus pattern (49 bp):
ATGCCAATATGCTGATTCAAGGCCAGTGACATTGGACTTAAAGATGAAG
Found at i:113616 original size:102 final size:102
Alignment explanation
Indices: 113312--113675 Score: 560
Period size: 102 Copynumber: 3.6 Consensus size: 102
113302 AATTGGGCTT
* * *
113312 ATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTTTTAGAGA-CAAGGTGCCAATATG-CTGA
1 ATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATAAAGGTGCCAATATGTC-GA
* *
113375 -T---TCAGGATCGGTGATATTGGACTTAAAGATGAAG
65 TTCAGTCAGGACCAGTGATATTGGACTTAAAGATGAAG
113409 ATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATGACAAAGGTGCCAATATGTC
1 ATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGAT---AAAGGTGCCAATATGTC
* *
113474 GATTCAGTTAGGACCAGTGATATTGGATTTAAAGATGAAG
63 GATTCAGTCAGGACCAGTGATATTGGACTTAAAGATGAAG
*
113514 ATGCTAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATAAAGGTGCCAATATGTCGAT
1 ATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATAAAGGTGCCAATATGTCGAT
113579 TCAGTCAGGACCAGTGATATTGGACTTAAAGATGAAG
66 TCAGTCAGGACCAGTGATATTGGACTTAAAGATGAAG
* *
113616 ATGCCAATGTGCTAATTCAAGGCCAGTGACATTGGTCTTAAAGATAAAGGTGCCAATATG
1 ATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATAAAGGTGCCAATATG
113676 CTAATTCAAG
Statistics
Matches: 245, Mismatches: 13, Indels: 13
0.90 0.05 0.05
Matches are distributed among these distances:
97 42 0.17
101 16 0.07
102 114 0.47
105 73 0.30
ACGTcount: A:0.32, C:0.16, G:0.26, T:0.27
Consensus pattern (102 bp):
ATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATAAAGGTGCCAATATGTCGAT
TCAGTCAGGACCAGTGATATTGGACTTAAAGATGAAG
Found at i:113780 original size:33 final size:32
Alignment explanation
Indices: 113704--113793 Score: 117
Period size: 32 Copynumber: 2.8 Consensus size: 32
113694 TATTGGGCTT
* *
113704 AAAGGTGCAACGGAGTTGTGGACTTAAAAAGA
1 AAAGGTGCCACGGAGTTGTGGGCTTAAAAAGA
* *
113736 AAAGGTACCACGGAGTTGTGGGCTTAAAAGGAA
1 AAAGGTGCCACGGAGTTGTGGGCTTAAAAAG-A
* *
113769 AAAGATGCCACGGACTTGTGGGCTT
1 AAAGGTGCCACGGAGTTGTGGGCTT
113794 TTGAAGGATG
Statistics
Matches: 50, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
32 27 0.54
33 23 0.46
ACGTcount: A:0.34, C:0.13, G:0.32, T:0.20
Consensus pattern (32 bp):
AAAGGTGCCACGGAGTTGTGGGCTTAAAAAGA
Found at i:115271 original size:22 final size:22
Alignment explanation
Indices: 115260--115333 Score: 80
Period size: 22 Copynumber: 3.3 Consensus size: 22
115250 GTTTGTTTGT
*
115260 TTTTTTTCTTT-TTTTTCTTTG
1 TTTTTTTCTTTCTTTTTTTTTG
115281 TTTTTTTCTCTTC-TTTTTTTTG
1 TTTTTTTCT-TTCTTTTTTTTTG
* *
115303 TTTTATTTGTTTGTTTTTTTTTTG
1 TTTT-TTTCTTT-CTTTTTTTTTG
115327 TTTTTTT
1 TTTTTTT
115334 ATGGATGACG
Statistics
Matches: 45, Mismatches: 3, Indels: 8
0.80 0.05 0.14
Matches are distributed among these distances:
21 9 0.20
22 16 0.36
23 7 0.16
24 13 0.29
ACGTcount: A:0.01, C:0.07, G:0.07, T:0.85
Consensus pattern (22 bp):
TTTTTTTCTTTCTTTTTTTTTG
Found at i:115332 original size:26 final size:26
Alignment explanation
Indices: 115243--115333 Score: 100
Period size: 26 Copynumber: 3.6 Consensus size: 26
115233 TTTGTTGTTG
115243 TTTTTTTGTTTGTTTGTTTTTT-TTCT
1 TTTTTTTGTTTGTTT-TTTTTTGTTCT
* * *
115269 TTTTTTTCTTTGTTTTTTTCTCTTCT
1 TTTTTTTGTTTGTTTTTTTTTGTTCT
* *
115295 TTTTTTTGTTT-TATTTGTTTGTT-T
1 TTTTTTTGTTTGTTTTTTTTTGTTCT
115319 TTTTTTTGTTT-TTTT
1 TTTTTTTGTTTGTTTT
115334 ATGGATGACG
Statistics
Matches: 56, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
24 15 0.27
25 13 0.23
26 28 0.50
ACGTcount: A:0.01, C:0.05, G:0.09, T:0.85
Consensus pattern (26 bp):
TTTTTTTGTTTGTTTTTTTTTGTTCT
Found at i:115350 original size:1 final size:1
Alignment explanation
Indices: 115243--115333 Score: 56
Period size: 1 Copynumber: 91.0 Consensus size: 1
115233 TTTGTTGTTG
* * * * * * * * * * *
115243 TTTTTTTGTTTGTTTGTTTTTTTTCTTTTTTTTCTTTGTTTTTTTCTCTTCTTTTTTTTGTTTTA
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* * *
115308 TTTGTTTGTTTTTTTTTTGTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTT
115334 ATGGATGACG
Statistics
Matches: 62, Mismatches: 28, Indels: 0
0.69 0.31 0.00
Matches are distributed among these distances:
1 62 1.00
ACGTcount: A:0.01, C:0.05, G:0.09, T:0.85
Consensus pattern (1 bp):
T
Found at i:126089 original size:19 final size:19
Alignment explanation
Indices: 126065--126146 Score: 104
Period size: 19 Copynumber: 4.6 Consensus size: 19
126055 AGCGATACAT
*
126065 TGTATCGATACAGCACTTA
1 TGTATCGATACAACACTTA
126084 TGTATCGATACAACACTTA
1 TGTATCGATACAACACTTA
126103 TGTATCGAT---ACA--T-
1 TGTATCGATACAACACTTA
126116 TGTATCGATACAACACTTA
1 TGTATCGATACAACACTTA
*
126135 TATATCGATACA
1 TGTATCGATACA
126147 GTTACTTGTT
Statistics
Matches: 55, Mismatches: 2, Indels: 12
0.80 0.03 0.17
Matches are distributed among these distances:
13 9 0.16
14 1 0.02
16 6 0.11
18 1 0.02
19 38 0.69
ACGTcount: A:0.35, C:0.20, G:0.12, T:0.33
Consensus pattern (19 bp):
TGTATCGATACAACACTTA
Found at i:126120 original size:32 final size:32
Alignment explanation
Indices: 126084--126146 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
126074 ACAGCACTTA
*
126084 TGTATCGATACAACACTTATGTATCGATACAT
1 TGTATCGATACAACACTTATATATCGATACAT
126116 TGTATCGATACAACACTTATATATCGATACA
1 TGTATCGATACAACACTTATATATCGATACA
126147 GTTACTTGTT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.37, C:0.19, G:0.11, T:0.33
Consensus pattern (32 bp):
TGTATCGATACAACACTTATATATCGATACAT
Found at i:126121 original size:13 final size:13
Alignment explanation
Indices: 126103--126127 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
126093 ACAACACTTA
126103 TGTATCGATACAT
1 TGTATCGATACAT
126116 TGTATCGATACA
1 TGTATCGATACA
126128 ACACTTATAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:128792 original size:155 final size:151
Alignment explanation
Indices: 128556--129641 Score: 781
Period size: 155 Copynumber: 7.0 Consensus size: 151
128546 ACTCATGGAC
* * * ** * *
128556 CTTAAAATG-ATCATAAATAGGGTAAACCCATCCTAAATACATATCTTTGGCATAAAAGCATCCC
1 CTTAAAA-GAATCATAAATAGGATGAACCTATCCTAAATACCCACCTTTAGCATAAAAGCAT-CC
* * * *
128620 AATGGCAACCTAGGACTCAGTTCTAAACAAA-TACAAAAATGTCACTACGGTTATACTTTCGACA
64 AGTGACAACCTAGGACTCAGTTCTAAA-AAATTACAAAAATGCCCCTA-GG-TATACTTTCGACA
* * *
128684 TTAAAGTATCCTAGTAACCGTAAAAGA
126 TGAAAGTAT-CTGGTAACCCTAAAAGA
*
128711 CTTAAAAGAATCATAAATAGGATGAACCCATCCTAAATACCCACCTTTAGCATAAAAGCATCTCA
1 CTTAAAAGAATCATAAATAGGATGAACCTATCCTAAATACCCACCTTTAGCATAAAAGCATC-CA
* * * * *
128776 GTGACAATCTAAGACTCGGTTCTAATAAAATTATAAAAATGCCCCTATAAGTATACTTTCGACAT
65 GTGACAACCTAGGACTCAGTTCTAA-AAAATTACAAAAATGCCCC--TAGGTATACTTTCGACAT
* * *
128841 GTAGGTATCCCGGTAACCCT-AAAGAA
127 GAAAGTAT-CTGGTAACCCTAAAAG-A
* * * *
128867 CTTAAAAAAGATCATAAAT-GAGATAAACTTATCCTAAATATCCACCTTT-GACATAAAAGCATC
1 CTTAAAAGA-ATCATAAATAG-GATGAACCTATCCTAAATACCCACCTTTAG-CATAAAAGCATC
* * * * * *
128930 C-TTGACAACCTAGGACTC-GATTTTAAAAAAATTACGAAAATACCCCTATGTA-AC-TTCAACA
63 CAGTGACAACCTAGGACTCAG-TTCT-AAAAAATTACAAAAATGCCCCTAGGTATACTTTCGACA
* * *
128991 TGAAAGTATCTCGGTAAACCTCAAGGA
126 TGAAAGTATCT-GGTAACCCTAAAAGA
* * * * *
129018 CTAAAAAGGATCATAAAT-GATATGAACCTATCCTAAATACCCACCTTTAGAATAAAAGCAACCT
1 CTTAAAAGAATCATAAATAG-GATGAACCTATCCTAAATACCCACCTTTAGCATAAAAGCATCC-
* * * * * **
129082 AGTGACAGCCTAGGACTTAATTTTAGAAAAATTACGAAAATGCCTTTATAGGTATACTTTCGACA
64 AGTGACAACCTAGGACTCAGTTCTA-AAAAATTACAAAAATGCC--CCTAGGTATACTTTCGACA
*
129147 TGAAAGTATCTCGATAACCCTAAAAGA
126 TGAAAGTATCT-GGTAACCCTAAAAGA
* * * *
129174 CTTAAAAAAGATCATAAATAGGATGAACCTACCCTAAATACCCATC-TTCGACATAAAAGCATCC
1 CTTAAAAGA-ATCATAAATAGGATGAACCTATCCTAAATACCCACCTTTAG-CATAAAAGCATCC
* * * ** *
129238 TGGTGACAACCTAGGACTC-GATTCTGAAAAAATTATAAAAATGCCCTTATGTGTATACCGTCAA
64 -AGTGACAACCTAGGACTCAG-TTCT-AAAAAATTACAAAAATGCCCCTA-G-GTATACTTTCGA
* * * *
129302 CATAAAAGTGTCTCGGTAAACCTAAATGA
124 CATGAAAGTATCT-GGTAACCCTAAAAGA
*** * ** * *
129331 CTTAAAAAGGGCCATAAAT-GACATGAACCTATCCTAAATACCCATATTTGGTATAAAAGCATCT
1 CTT-AAAAGAATCATAAATAG-GATGAACCTATCCTAAATACCCACCTTTAGCATAAAAGCATC-
* * * * ** * *
129395 C-GATGATAACCTAAGAGTC-GATT-TGGAAAAATTATGAAAATG-CCTTATGGGTATACCTTCG
63 CAG-TGACAACCTAGGACTCAG-TTCT-AAAAAATTACAAAAATGCCCCTA--GGTATACTTTCG
*
129456 ACATGAAAGTATCTTGGTAACCCTAAAGGA
123 ACATGAAAGTATC-TGGTAACCCTAAAAGA
*
129486 CTTAAAAAAGATCATAAATAGGATGAACCTATCCTAAATACCCACCTTTAGCATAAAAGCATCTC
1 CTTAAAAGA-ATCATAAATAGGATGAACCTATCCTAAATACCCACCTTTAGCATAAAAGCATC-C
* * * * * ** *
129551 GGAGACAACCTAAGACTC-GATTTTGGAAAAATTA-AAAAAAACCCTTATAGGTATACCTTTCG-
64 AGTGACAACCTAGGACTCAG-TTCT-AAAAAATTACAAAAATGCCC--CTAGGTATA-CTTTCGA
*
129613 CATGAAAGTAACTTGGTAACCCTAAAAGA
124 CATGAAAGTATC-TGGTAACCCTAAAAGA
129642 TAAAAAAATA
Statistics
Matches: 758, Mismatches: 128, Indels: 89
0.78 0.13 0.09
Matches are distributed among these distances:
150 47 0.06
151 30 0.04
152 40 0.05
153 5 0.01
154 12 0.02
155 227 0.30
156 162 0.21
157 221 0.29
158 14 0.02
ACGTcount: A:0.41, C:0.20, G:0.14, T:0.26
Consensus pattern (151 bp):
CTTAAAAGAATCATAAATAGGATGAACCTATCCTAAATACCCACCTTTAGCATAAAAGCATCCAG
TGACAACCTAGGACTCAGTTCTAAAAAATTACAAAAATGCCCCTAGGTATACTTTCGACATGAAA
GTATCTGGTAACCCTAAAAGA
Found at i:129062 original size:307 final size:308
Alignment explanation
Indices: 128559--129594 Score: 1035
Period size: 307 Copynumber: 3.3 Consensus size: 308
128549 CATGGACCTT
* * * * ** * * *
128559 AAAATGATCATAAATAGGGTAAACCCATCCTAAATACATATCTTTGGCATAAAAGCATCCCAATG
1 AAAAAGATCATAAATAGGATGAACCTATCCTAAATACCCACCTTTGACATAAAAGCAT-CC-TTG
* * ** * ** *
128624 GCAACCTAGGACTC-AGTTCT-AAACAAA-TACAAAAATGTCACTACG-GTTATACTTTCGACAT
64 ACAACCTAGGACTCGA-TTTTGAAA-AAATTACAAAAATACCCCTA-GTG-TATACCGTCAACAT
* * * * * * *
128685 TAAAGTATC-CTAGT-AACCGTAAAAGACTTAAAAGAATCATAAAT-AGGATGAACCCATCCTAA
125 AAAAGTATCTC-GGTAAACC-TAAAGGACTAAAAAGGATCATAAATGA-CATGAACCTATCCTAA
* * * *
128747 ATACCCACCTTTAGCATAAAAGCATCTCAGTGACAATCTAAGACTCGGTTCTAATAAAATTATAA
187 ATACCCACCTTTAGAATAAAAGCATCTCAGTGACAACCTAAGACTCGATT-TAA-AAAATTATGA
* * * * *
128812 AAATGCCCCTATAAGTATACTTTCGACATGTAGGTATCCCGGTAACCCTAAAGAACTTA
250 AAATGCCCTTATAGGTATACTTTCGACATGAAAGTATCTCGGTAACCCTAAAGAACTTA
* * *
128871 AAAAAGATCATAAAT-GAGATAAACTTATCCTAAATATCCACCTTTGACATAAAAGCATCCTTGA
1 AAAAAGATCATAAATAG-GATGAACCTATCCTAAATACCCACCTTTGACATAAAAGCATCCTTGA
* * * *
128935 CAACCTAGGACTCGATTTTAAAAAAATTACGAAAATACCCCTA-TGTA-A-CTTCAACATGAAAG
65 CAACCTAGGACTCGATTTTGAAAAAATTACAAAAATACCCCTAGTGTATACCGTCAACATAAAAG
* *
128997 TATCTCGGTAAACCTCAAGGACTAAAAAGGATCATAAATGATATGAACCTATCCTAAATACCCAC
130 TATCTCGGTAAACCTAAAGGACTAAAAAGGATCATAAATGACATGAACCTATCCTAAATACCCAC
* * * ** *
129062 CTTTAGAATAAAAGCAAC-CTAGTGACAGCCTAGGACTTAATTTTAGAAAAATTACGAAAATGCC
195 CTTTAGAATAAAAGCATCTC-AGTGACAACCTAAGACTCGA-TTTA-AAAAATTATGAAAATGCC
* *
129126 TTTATAGGTATACTTTCGACATGAAAGTATCTCGATAACCCTAAA-AGACTTA
257 CTTATAGGTATACTTTCGACATGAAAGTATCTCGGTAACCCTAAAGA-ACTTA
* * *
129178 AAAAAGATCATAAATAGGATGAACCTACCCTAAATACCCATCTTCGACATAAAAGCATCCTGGTG
1 AAAAAGATCATAAATAGGATGAACCTATCCTAAATACCCACCTTTGACATAAAAGCATCCT--TG
* * * *
129243 ACAACCTAGGACTCGATTCTGAAAAAATTATAAAAATGCCCTTATGTGTATACCGTCAACATAAA
64 ACAACCTAGGACTCGATTTTGAAAAAATTACAAAAATACCCCTA-GTGTATACCGTCAACATAAA
* * **
129308 AGTGTCTCGGTAAACCTAAATGACTTAAAAAGGGCCATAAATGACATGAACCTATCCTAAATACC
128 AGTATCTCGGTAAACCTAAAGGAC-TAAAAAGGATCATAAATGACATGAACCTATCCTAAATACC
** * * * * *
129373 CATATTTGGTATAAAAGCATCTC-GATGATAACCTAAGAGTCGATTTGGAAAAATTATGAAAATG
192 CACCTTTAGAATAAAAGCATCTCAG-TGACAACCTAAGACTCGATTT-AAAAAATTATGAAAATG
* * * *
129437 -CCTTATGGGTATACCTTCGACATGAAAGTATCTTGGTAACCCTAAAGGACTTA
255 CCCTTATAGGTATACTTTCGACATGAAAGTATCTCGGTAACCCTAAAGAACTTA
**
129490 AAAAAGATCATAAATAGGATGAACCTATCCTAAATACCCACCTTT-AGCATAAAAGCATCTCGGA
1 AAAAAGATCATAAATAGGATGAACCTATCCTAAATACCCACCTTTGA-CATAAAAGCATC-C-TT
* * *
129554 GACAACCTAAGACTCGATTTTGGAAAAATTA-AAAAAAACCC
63 GACAACCTAGGACTCGATTTTGAAAAAATTACAAAAATACCC
129595 TTATAGGTAT
Statistics
Matches: 605, Mismatches: 92, Indels: 55
0.80 0.12 0.07
Matches are distributed among these distances:
306 2 0.00
307 203 0.34
308 11 0.02
309 42 0.07
310 22 0.04
311 32 0.05
312 176 0.29
313 51 0.08
314 65 0.11
315 1 0.00
ACGTcount: A:0.41, C:0.20, G:0.14, T:0.25
Consensus pattern (308 bp):
AAAAAGATCATAAATAGGATGAACCTATCCTAAATACCCACCTTTGACATAAAAGCATCCTTGAC
AACCTAGGACTCGATTTTGAAAAAATTACAAAAATACCCCTAGTGTATACCGTCAACATAAAAGT
ATCTCGGTAAACCTAAAGGACTAAAAAGGATCATAAATGACATGAACCTATCCTAAATACCCACC
TTTAGAATAAAAGCATCTCAGTGACAACCTAAGACTCGATTTAAAAAATTATGAAAATGCCCTTA
TAGGTATACTTTCGACATGAAAGTATCTCGGTAACCCTAAAGAACTTA
Found at i:129630 original size:156 final size:155
Alignment explanation
Indices: 128671--129638 Score: 948
Period size: 157 Copynumber: 6.2 Consensus size: 155
128661 TCACTACGGT
* * * * *
128671 TATACTTTCGACATTAAAGTATC-CTAGTAACCGTAAAAGACTTAAAAGA-ATCATAAAT-AGGA
1 TATACTTTCGACATGAAAGTATCTC-GGTAACCCTAAAGGACTTAAAAAAGATCATAAATGA-GA
* * * *
128733 TGAACCCATCCTAAATACCCACCTTTAGCATAAAAGCATCTCAGTGACAATCTAAGACTCGGTTC
64 TGAACCTATCCTAAATACCCACCTTTAGCATAAAAGCATC-C-GTGACAACCTAAGACTCGATTT
* * *
128798 T-AATAAAATTATAAAAATGCCCCTATAAG
127 TGAA-AAAATTACAAAAATGCCCTTATAGG
* * * * *
128827 TATACTTTCGACATGTAGGTATCCCGGTAACCCTAAAGAACTTAAAAAAGATCATAAATGAGATA
1 TATACTTTCGACATGAAAGTATCTCGGTAACCCTAAAGGACTTAAAAAAGATCATAAATGAGATG
* * * * *
128892 AACTTATCCTAAATATCCACCTTT-GACATAAAAGCATCCTTGACAACCTAGGACTCGATTTTAA
66 AACCTATCCTAAATACCCACCTTTAG-CATAAAAGCATCCGTGACAACCTAAGACTCGATTTTGA
* * *
128956 AAAAATTACGAAAATACCCCTAT--G
130 AAAAATTACAAAAATGCCCTTATAGG
* * * * *
128980 TA-AC-TTCAACATGAAAGTATCTCGGTAAACCTCAAGGAC-TAAAAAGGATCATAAATGATATG
1 TATACTTTCGACATGAAAGTATCTCGGTAACCCTAAAGGACTTAAAAAAGATCATAAATGAGATG
* * * * **
129042 AACCTATCCTAAATACCCACCTTTAGAATAAAAGCAACCTAGTGACAGCCTAGGACTTAATTTT-
66 AACCTATCCTAAATACCCACCTTTAGCATAAAAGCATCC--GTGACAACCTAAGACTCGATTTTG
* *
129106 AGAAAAATTACGAAAATGCCTTTATAGG
129 A-AAAAATTACAAAAATGCCCTTATAGG
* *
129134 TATACTTTCGACATGAAAGTATCTCGATAACCCTAAAAGACTTAAAAAAGATCATAAAT-AGGAT
1 TATACTTTCGACATGAAAGTATCTCGGTAACCCTAAAGGACTTAAAAAAGATCATAAATGA-GAT
* * * * *
129198 GAACCTACCCTAAATACCCATC-TTCGACATAAAAGCATCCTGGTGACAACCTAGGACTCGATTC
65 GAACCTATCCTAAATACCCACCTTTAG-CATAAAAGCATCC--GTGACAACCTAAGACTCGATTT
*
129262 TGAAAAAATTATAAAAATGCCCTTAT-GTG
127 TGAAAAAATTACAAAAATGCCCTTATAG-G
** * * * * * * ** *
129291 TATACCGTCAACATAAAAGTGTCTCGGTAAACCTAAATGACTTAAAAAGGGCCATAAATGACATG
1 TATACTTTCGACATGAAAGTATCTCGGTAACCCTAAAGGACTTAAAAAAGATCATAAATGAGATG
** * * * *
129356 AACCTATCCTAAATACCCATATTTGGTATAAAAGCATCTCGATGATAACCTAAGAGTCGA-TTTG
66 AACCTATCCTAAATACCCACCTTTAGCATAAAAGCATC-CG-TGACAACCTAAGACTCGATTTTG
* ** *
129420 GAAAAATTATGAAAATG-CCTTATGGG
129 AAAAAATTACAAAAATGCCCTTATAGG
* *
129446 TATACCTTCGACATGAAAGTATCTTGGTAACCCTAAAGGACTTAAAAAAGATCATAAAT-AGGAT
1 TATACTTTCGACATGAAAGTATCTCGGTAACCCTAAAGGACTTAAAAAAGATCATAAATGA-GAT
*
129510 GAACCTATCCTAAATACCCACCTTTAGCATAAAAGCATCTCGGAGACAACCTAAGACTCGATTTT
65 GAACCTATCCTAAATACCCACCTTTAGCATAAAAGCATC-C-GTGACAACCTAAGACTCGATTTT
* **
129575 GGAAAAATTA-AAAAAAACCCTTATAGG
128 GAAAAAATTACAAAAATGCCCTTATAGG
* *
129602 TATACCTTTCG-CATGAAAGTAACTTGGTAACCCTAAA
1 TATA-CTTTCGACATGAAAGTATCTCGGTAACCCTAAA
129639 AGATAAAAAA
Statistics
Matches: 677, Mismatches: 107, Indels: 56
0.81 0.13 0.07
Matches are distributed among these distances:
150 53 0.08
151 30 0.04
152 41 0.06
153 3 0.00
154 4 0.01
155 153 0.23
156 149 0.22
157 237 0.35
158 7 0.01
ACGTcount: A:0.41, C:0.20, G:0.14, T:0.26
Consensus pattern (155 bp):
TATACTTTCGACATGAAAGTATCTCGGTAACCCTAAAGGACTTAAAAAAGATCATAAATGAGATG
AACCTATCCTAAATACCCACCTTTAGCATAAAAGCATCCGTGACAACCTAAGACTCGATTTTGAA
AAAATTACAAAAATGCCCTTATAGG
Found at i:131770 original size:152 final size:150
Alignment explanation
Indices: 131438--131791 Score: 403
Period size: 151 Copynumber: 2.3 Consensus size: 150
131428 ATCGATATAT
* * ** *
131438 ACAAAAAAATTC-AAAACTCATGAAATAAATTGAA-TTCCCTAAAACTAATTTAATATAAATTTA
1 ACAAAAAAATTCTAAAACTCATAAAATAAATTAAATTTTTC-AAAACTAATTTAATATAAATTAA
* * * *
131501 ATAAAAATATTTAATGAATTTAAAATTTTGAACTGAGAAAAATTCAACAAAAAAATTTACGGAGT
65 ACAAAAATATTTAATGAATTTAAAATTATAAACTGAGAAAAATCCAACAAAAAAATTTACGGAGT
* *
131566 AGAAAACTCTATACCTTAGAA
130 AGAAAAATCTATACCTCAGAA
* *
131587 ACAGAAAAAATTCTAAAACTCATAAAATAAATTAAATTTTTCAAAATTAATTTAATATGAATTAA
1 ACA-AAAAAATTCTAAAACTCATAAAATAAATTAAATTTTTCAAAACTAATTTAATATAAATTAA
* * * * *
131652 ACAATAATATTTGAA-GAATTTGAAAAATTATAAACTTATAAAAATCCTACCAAAAAAATTTATG
65 ACAAAAATATTT-AATGAATTT--AAAATTATAAACTGAGAAAAATCC-AACAAAAAAATTTACG
* * *
131716 GAGTA-AAAAATTTGTATCTCA-ATA
126 GAGTAGAAAAATCTATACCTCAGA-A
* *
131740 ACAAAAAAATTCTAAAGCTCATAAAATAAATTAAATTTTTCAAAACCAATTT
1 ACAAAAAAATTCTAAAACTCATAAAATAAATTAAATTTTTCAAAACTAATTT
131792 TATGGTGATT
Statistics
Matches: 173, Mismatches: 24, Indels: 13
0.82 0.11 0.06
Matches are distributed among these distances:
149 3 0.02
150 9 0.05
151 56 0.32
152 52 0.30
153 34 0.20
154 19 0.11
ACGTcount: A:0.53, C:0.10, G:0.06, T:0.31
Consensus pattern (150 bp):
ACAAAAAAATTCTAAAACTCATAAAATAAATTAAATTTTTCAAAACTAATTTAATATAAATTAAA
CAAAAATATTTAATGAATTTAAAATTATAAACTGAGAAAAATCCAACAAAAAAATTTACGGAGTA
GAAAAATCTATACCTCAGAA
Found at i:134938 original size:17 final size:19
Alignment explanation
Indices: 134906--134942 Score: 60
Period size: 17 Copynumber: 2.1 Consensus size: 19
134896 ATTTTTCGGT
134906 ATTTTTTTGATAAAAATTA
1 ATTTTTTTGATAAAAATTA
134925 ATTTTTTT-AT-AAAATTA
1 ATTTTTTTGATAAAAATTA
134942 A
1 A
134943 AATCGATAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 8 0.44
18 2 0.11
19 8 0.44
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.54
Consensus pattern (19 bp):
ATTTTTTTGATAAAAATTA
Found at i:137181 original size:3 final size:3
Alignment explanation
Indices: 137167--137200 Score: 50
Period size: 3 Copynumber: 11.3 Consensus size: 3
137157 ACCGTCAAAA
* *
137167 ATG ATG AAG ATG ATG ATG ATG ATG ATA ATG ATG A
1 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG A
137201 GGTTGACTCG
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.41, C:0.00, G:0.29, T:0.29
Consensus pattern (3 bp):
ATG
Found at i:154202 original size:21 final size:21
Alignment explanation
Indices: 154169--154209 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
154159 CTAAGTAAAA
154169 ATACGTATTGTATCAATACAT
1 ATACGTATTGTATCAATACAT
*
154190 ATAC-TATTGGTATTAATACA
1 ATACGTATT-GTATCAATACA
154210 CAAGGTTGAC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.39, C:0.12, G:0.10, T:0.39
Consensus pattern (21 bp):
ATACGTATTGTATCAATACAT
Found at i:154274 original size:20 final size:19
Alignment explanation
Indices: 154249--154319 Score: 70
Period size: 20 Copynumber: 3.6 Consensus size: 19
154239 ACCCTGAAAA
154249 GTATCGATACACATTTAAAT
1 GTATCGATACACA-TTAAAT
* **
154269 GTATCGATACAAATTGCAT
1 GTATCGATACACATTAAAT
**
154288 AGTATCGATACACACAAATAT
1 -GTATCGATACACATTAA-AT
154309 GTATCGATACA
1 GTATCGATACA
154320 GGACATTGGC
Statistics
Matches: 41, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
19 4 0.10
20 35 0.85
21 2 0.05
ACGTcount: A:0.41, C:0.17, G:0.13, T:0.30
Consensus pattern (19 bp):
GTATCGATACACATTAAAT
Found at i:154372 original size:53 final size:53
Alignment explanation
Indices: 154289--154425 Score: 247
Period size: 53 Copynumber: 2.6 Consensus size: 53
154279 AAATTGCATA
154289 GTATCGATACACACAAATATGTATCGATACAGGACATTGGCAGTAGCCAAATTT
1 GTATCGATACACAC-AATATGTATCGATACAGGACATTGGCAGTAGCCAAATTT
*
154343 GTATCGATACACACAATATGTATCGATACAGGTCATTGGCAGTAGCCAAATTT
1 GTATCGATACACACAATATGTATCGATACAGGACATTGGCAGTAGCCAAATTT
*
154396 GTATCGATACACAAAATATGTATCGATACA
1 GTATCGATACACACAATATGTATCGATACA
154426 CAAAATATGT
Statistics
Matches: 81, Mismatches: 2, Indels: 1
0.96 0.02 0.01
Matches are distributed among these distances:
53 67 0.83
54 14 0.17
ACGTcount: A:0.37, C:0.18, G:0.18, T:0.27
Consensus pattern (53 bp):
GTATCGATACACACAATATGTATCGATACAGGACATTGGCAGTAGCCAAATTT
Found at i:154417 original size:19 final size:19
Alignment explanation
Indices: 154390--154438 Score: 89
Period size: 19 Copynumber: 2.6 Consensus size: 19
154380 GGCAGTAGCC
*
154390 AAATTTGTATCGATACACA
1 AAATATGTATCGATACACA
154409 AAATATGTATCGATACACA
1 AAATATGTATCGATACACA
154428 AAATATGTATC
1 AAATATGTATC
154439 AAATCACTGT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.45, C:0.14, G:0.10, T:0.31
Consensus pattern (19 bp):
AAATATGTATCGATACACA
Found at i:154480 original size:13 final size:13
Alignment explanation
Indices: 154462--154500 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
154452 TCACTATTCA
154462 TGTATCGATACAT
1 TGTATCGATACAT
*
154475 TGTATCGATACAG
1 TGTATCGATACAT
154488 TGTATCGATACAT
1 TGTATCGATACAT
154501 CATAAATAGT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.31, C:0.15, G:0.18, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:155033 original size:34 final size:35
Alignment explanation
Indices: 154970--155036 Score: 102
Period size: 37 Copynumber: 1.9 Consensus size: 35
154960 CTAAGTGATT
154970 GAGAGGTTCTATCTTAGCCTTTGAAAAAGATAGAGA
1 GAGAGGTTCTATCTTAGCCTTTG-AAAAGATAGAGA
155006 GAGAGGTTTCTATCTTAGCC-TTG-AAAGATAG
1 GAGAGG-TTCTATCTTAGCCTTTGAAAAGATAG
155037 TATTGAAGGT
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
34 8 0.27
36 9 0.30
37 13 0.43
ACGTcount: A:0.33, C:0.12, G:0.25, T:0.30
Consensus pattern (35 bp):
GAGAGGTTCTATCTTAGCCTTTGAAAAGATAGAGA
Found at i:155047 original size:34 final size:36
Alignment explanation
Indices: 154966--155047 Score: 100
Period size: 34 Copynumber: 2.3 Consensus size: 36
154956 TTCTCTAAGT
154966 GATTGAGAGG-TTCTATCTTAGCCTTTGAAAAAGATA
1 GATTGAGAGGTTTCTATCTTAGCCTTTG-AAAAGATA
**
155002 GAGAGAGAGGTTTCTATCTTAGCC-TTG-AAAGATA
1 GATTGAGAGGTTTCTATCTTAGCCTTTGAAAAGATA
155036 GTATTGA-AGGTT
1 G-ATTGAGAGGTT
155048 ATACCTTAGC
Statistics
Matches: 40, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
34 13 0.32
35 3 0.08
36 11 0.28
37 13 0.32
ACGTcount: A:0.32, C:0.10, G:0.26, T:0.33
Consensus pattern (36 bp):
GATTGAGAGGTTTCTATCTTAGCCTTTGAAAAGATA
Found at i:155842 original size:22 final size:22
Alignment explanation
Indices: 155817--155858 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
155807 TTTTTTAATT
155817 TTTGACAAAGGGAGAGAAATGC
1 TTTGACAAAGGGAGAGAAATGC
** *
155839 TTTGATTAAGGGGGAGAAAT
1 TTTGACAAAGGGAGAGAAAT
155859 TCATTAATTA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.38, C:0.05, G:0.33, T:0.24
Consensus pattern (22 bp):
TTTGACAAAGGGAGAGAAATGC
Found at i:155868 original size:22 final size:22
Alignment explanation
Indices: 155824--155879 Score: 76
Period size: 22 Copynumber: 2.5 Consensus size: 22
155814 ATTTTTGACA
* * *
155824 AAGGGAGAGAAATGCTTTGATT
1 AAGGGGGAGAAATGCATTAATT
*
155846 AAGGGGGAGAAATTCATTAATT
1 AAGGGGGAGAAATGCATTAATT
155868 AAGGGGGAGAAA
1 AAGGGGGAGAAA
155880 AACAAAAACT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.41, C:0.04, G:0.34, T:0.21
Consensus pattern (22 bp):
AAGGGGGAGAAATGCATTAATT
Found at i:156446 original size:19 final size:19
Alignment explanation
Indices: 156403--156475 Score: 76
Period size: 20 Copynumber: 3.7 Consensus size: 19
156393 CTCACCCAGA
*
156403 TGTATCGATACAT-TATGCTT
1 TGTATCGATACATGT-T-CAT
156423 TGTATCGATACATGTTCAT
1 TGTATCGATACATGTTCAT
**
156442 TGTATCGATACATGGACAAT
1 TGTATCGATACATGTTC-AT
*
156462 TGTATTGATACATG
1 TGTATCGATACATG
156476 AAATTGGCAG
Statistics
Matches: 47, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
19 17 0.36
20 29 0.62
21 1 0.02
ACGTcount: A:0.29, C:0.14, G:0.18, T:0.40
Consensus pattern (19 bp):
TGTATCGATACATGTTCAT
Found at i:156530 original size:20 final size:20
Alignment explanation
Indices: 156505--156542 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
156495 TACCACTATT
156505 TGTATCGATACATGGTATAA
1 TGTATCGATACATGGTATAA
*
156525 TGTATCGATACATTGTAT
1 TGTATCGATACATGGTAT
156543 CGATACATGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.32, C:0.11, G:0.18, T:0.39
Consensus pattern (20 bp):
TGTATCGATACATGGTATAA
Found at i:156541 original size:13 final size:13
Alignment explanation
Indices: 156525--156550 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
156515 CATGGTATAA
156525 TGTATCGATACAT
1 TGTATCGATACAT
156538 TGTATCGATACAT
1 TGTATCGATACAT
156551 GATGAATTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:156546 original size:33 final size:33
Alignment explanation
Indices: 156504--156572 Score: 97
Period size: 33 Copynumber: 2.1 Consensus size: 33
156494 CTACCACTAT
*
156504 TTGTATCGATACATGGTAT-AA-TGTATCGATACA
1 TTGTATCGATACAT-G-ATGAATTGTATCAATACA
156537 TTGTATCGATACATGATGAATTGTATCAATACA
1 TTGTATCGATACATGATGAATTGTATCAATACA
156570 TTG
1 TTG
156573 CTTGTAACGG
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
31 2 0.06
32 3 0.09
33 28 0.85
ACGTcount: A:0.33, C:0.12, G:0.17, T:0.38
Consensus pattern (33 bp):
TTGTATCGATACATGATGAATTGTATCAATACA
Found at i:164327 original size:27 final size:26
Alignment explanation
Indices: 164297--164353 Score: 64
Period size: 27 Copynumber: 2.2 Consensus size: 26
164287 TTATTTAATA
*
164297 TATTTTGTA-TTTATACTTTAGTTTATT
1 TATTTTATACTTTATACTTTA--TTATT
*
164324 TA-TTTATACTTTATATTTTATTATT
1 TATTTTATACTTTATACTTTATTATT
164349 TATTT
1 TATTT
164354 ATTTTCTAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
25 7 0.27
26 7 0.27
27 12 0.46
ACGTcount: A:0.25, C:0.04, G:0.04, T:0.68
Consensus pattern (26 bp):
TATTTTATACTTTATACTTTATTATT
Found at i:165012 original size:25 final size:25
Alignment explanation
Indices: 164965--165026 Score: 74
Period size: 25 Copynumber: 2.6 Consensus size: 25
164955 TCCAGCCCTC
*
164965 ATTTTA-TTTT-TTTAAAATTTTAA
1 ATTTTATTTTTATTTAAAATATTAA
*
164988 ATTTTATTTTTATTTAATATATTAA
1 ATTTTATTTTTATTTAAAATATTAA
* *
165013 GTTATATTTTTATT
1 ATTTTATTTTTATT
165027 ATTTTTATTA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
23 6 0.18
24 4 0.12
25 23 0.70
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (25 bp):
ATTTTATTTTTATTTAAAATATTAA
Found at i:166053 original size:22 final size:23
Alignment explanation
Indices: 166025--166081 Score: 64
Period size: 22 Copynumber: 2.5 Consensus size: 23
166015 GCAAAATTTT
*
166025 TAAAAATTTTAGATG-TTAAATAA
1 TAAAAATTAT-GATGATTAAATAA
*
166048 -AAAAATTATGGTGATTAAATAA
1 TAAAAATTATGATGATTAAATAA
166070 TAAAAATATATG
1 TAAAAAT-TATG
166082 TTAAACAATG
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
21 3 0.10
22 16 0.55
23 6 0.21
24 4 0.14
ACGTcount: A:0.54, C:0.00, G:0.11, T:0.35
Consensus pattern (23 bp):
TAAAAATTATGATGATTAAATAA
Found at i:166181 original size:25 final size:26
Alignment explanation
Indices: 166135--166186 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
166125 TTTTAAAATA
166135 AAATAAATAATAAATATAAATATATTT
1 AAATAAAT-ATAAATATAAATATATTT
* *
166162 AAATAAAT-TAAATTTTAATATATTT
1 AAATAAATATAAATATAAATATATTT
166187 TAATTTTTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
25 15 0.65
27 8 0.35
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (26 bp):
AAATAAATATAAATATAAATATATTT
Found at i:174496 original size:30 final size:30
Alignment explanation
Indices: 174434--174503 Score: 81
Period size: 30 Copynumber: 2.4 Consensus size: 30
174424 AGATTGAGTA
* * *
174434 CAAATTAAAAGTTAAGGGTTTATTTGGGTG
1 CAAATTAAAAGTTAAGAGCTTATTTGGATG
* *
174464 CAAATTAAAGGTTAAGAGCTTATTTGTATG
1 CAAATTAAAAGTTAAGAGCTTATTTGGATG
174494 C-AA-TAAAAGT
1 CAAATTAAAAGT
174504 ATAATGGTTC
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
28 6 0.18
29 2 0.06
30 26 0.76
ACGTcount: A:0.39, C:0.06, G:0.21, T:0.34
Consensus pattern (30 bp):
CAAATTAAAAGTTAAGAGCTTATTTGGATG
Found at i:179318 original size:15 final size:15
Alignment explanation
Indices: 179298--179357 Score: 50
Period size: 15 Copynumber: 3.8 Consensus size: 15
179288 TGAATTAATT
179298 TTTAAATATTTATTA
1 TTTAAATATTTATTA
179313 TTTAAAT-TTATATTA
1 TTTAAATATT-TATTA
* * *
179328 TATAATATAAATAATTAA
1 TTTAA-AT-ATTTATT-A
179346 TTTAAATATTTA
1 TTTAAATATTTA
179358 AATTTATTTT
Statistics
Matches: 34, Mismatches: 6, Indels: 9
0.69 0.12 0.18
Matches are distributed among these distances:
14 2 0.06
15 16 0.47
16 5 0.15
17 5 0.15
18 6 0.18
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (15 bp):
TTTAAATATTTATTA
Found at i:179366 original size:51 final size:50
Alignment explanation
Indices: 179261--179357 Score: 130
Period size: 51 Copynumber: 2.0 Consensus size: 50
179251 TTTAAATAAA
179261 ATTTAAATTTAAATATTATAATTATAATGAATTAATTTTTAAATATTTATT
1 ATTTAAATTTAAATATTATAATTATAATGAATTAA-TTTTAAATATTTATT
*
179312 ATTTAAATTT--ATATTATATAATATAAAT-AATTAA-TTTAAATATTTA
1 ATTTAAATTTAAATATTATA-ATTAT-AATGAATTAATTTTAAATATTTA
179358 AATTTATTTT
Statistics
Matches: 43, Mismatches: 1, Indels: 7
0.84 0.02 0.14
Matches are distributed among these distances:
48 12 0.28
49 8 0.19
50 10 0.23
51 13 0.30
ACGTcount: A:0.47, C:0.00, G:0.01, T:0.52
Consensus pattern (50 bp):
ATTTAAATTTAAATATTATAATTATAATGAATTAATTTTAAATATTTATT
Found at i:179438 original size:17 final size:17
Alignment explanation
Indices: 179412--179458 Score: 57
Period size: 17 Copynumber: 3.0 Consensus size: 17
179402 TTAAATTTTA
179412 ATTTATTAAATTTAAAT
1 ATTTATTAAATTTAAAT
*
179429 ATTTAATAAA--T-AAT
1 ATTTATTAAATTTAAAT
179443 A-TTATTAAATTTAAAT
1 ATTTATTAAATTTAAAT
179459 TTAATTTTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 7
0.74 0.06 0.21
Matches are distributed among these distances:
13 7 0.28
14 4 0.16
15 2 0.08
16 3 0.12
17 9 0.36
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (17 bp):
ATTTATTAAATTTAAAT
Found at i:180499 original size:8 final size:8
Alignment explanation
Indices: 180486--180518 Score: 50
Period size: 8 Copynumber: 4.2 Consensus size: 8
180476 AAAGTGGAAG
180486 AAAAAAGA
1 AAAAAAGA
180494 AAAAAA-A
1 AAAAAAGA
180501 AAAAAAGA
1 AAAAAAGA
*
180509 AAAAAGGA
1 AAAAAAGA
180517 AA
1 AA
180519 GTGTCCCTAG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
7 7 0.30
8 16 0.70
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (8 bp):
AAAAAAGA
Found at i:182582 original size:33 final size:33
Alignment explanation
Indices: 182542--182616 Score: 98
Period size: 32 Copynumber: 2.3 Consensus size: 33
182532 TAAAAAATTA
* *
182542 AAATATAATATGATAAATTTTTTAAAATTTATAT
1 AAATATAA-ATGATAAATATATTAAAATTTATAT
* *
182576 -AATATAAATTATTAATATATTAAAATTTATAT
1 AAATATAAATGATAAATATATTAAAATTTATAT
182608 AAATATAAA
1 AAATATAAA
182617 ATATTTTAAA
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
32 21 0.58
33 15 0.42
ACGTcount: A:0.55, C:0.00, G:0.01, T:0.44
Consensus pattern (33 bp):
AAATATAAATGATAAATATATTAAAATTTATAT
Found at i:182605 original size:18 final size:18
Alignment explanation
Indices: 182583--182631 Score: 59
Period size: 17 Copynumber: 2.8 Consensus size: 18
182573 TATAATATAA
182583 ATTATTAATATATTAAAAT
1 ATTATTAA-ATATTAAAAT
182602 -TTATATAAATA-TAAAAT
1 ATTAT-TAAATATTAAAAT
182619 ATT-TTAAATATTA
1 ATTATTAAATATTA
182632 TTATAAAATA
Statistics
Matches: 27, Mismatches: 0, Indels: 8
0.77 0.00 0.23
Matches are distributed among these distances:
16 6 0.22
17 9 0.33
18 9 0.33
19 3 0.11
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (18 bp):
ATTATTAAATATTAAAAT
Found at i:182616 original size:17 final size:17
Alignment explanation
Indices: 182564--182618 Score: 64
Period size: 17 Copynumber: 3.4 Consensus size: 17
182554 ATAAATTTTT
182564 TAAAATTTATAT-AATA
1 TAAAATTTATATAAATA
182580 T-AAA-TTAT-TAATATA
1 TAAAATTTATATAA-ATA
182595 TTAAAATTTATATAAATA
1 -TAAAATTTATATAAATA
182613 TAAAAT
1 TAAAAT
182619 ATTTTAAATA
Statistics
Matches: 33, Mismatches: 0, Indels: 11
0.75 0.00 0.25
Matches are distributed among these distances:
13 1 0.03
14 5 0.15
15 6 0.18
16 2 0.06
17 9 0.27
18 7 0.21
19 3 0.09
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (17 bp):
TAAAATTTATATAAATA
Found at i:183028 original size:25 final size:25
Alignment explanation
Indices: 182982--183031 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
182972 TATTTTTTTT
*
182982 ATAAAATTTTTATAATTAAATTTAA
1 ATAAAATTTTTATAATCAAATTTAA
*
183007 ATAAAATTTTT-TTATCATAATTTAA
1 ATAAAATTTTTATAATCA-AATTTAA
183032 GTTGAGTCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
24 4 0.18
25 18 0.82
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (25 bp):
ATAAAATTTTTATAATCAAATTTAA
Found at i:191011 original size:20 final size:21
Alignment explanation
Indices: 190932--191010 Score: 72
Period size: 20 Copynumber: 3.7 Consensus size: 21
190922 AATTTCCAAA
*
190932 ATGTATCGATACATGT-TTCT
1 ATGTATCGATACATCTATTCT
* *
190952 GTGTATCGATACATCTGGAAATTCA
1 ATGTATCGATACATCT----ATTCT
190977 ATGTATCGATACAT-TATTCT
1 ATGTATCGATACATCTATTCT
*
190997 TTGTATCGATACAT
1 ATGTATCGATACAT
191011 TGTATCGATA
Statistics
Matches: 48, Mismatches: 6, Indels: 10
0.75 0.09 0.16
Matches are distributed among these distances:
20 31 0.65
24 1 0.02
25 16 0.33
ACGTcount: A:0.29, C:0.15, G:0.15, T:0.41
Consensus pattern (21 bp):
ATGTATCGATACATCTATTCT
Found at i:193547 original size:13 final size:13
Alignment explanation
Indices: 193529--193554 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
193519 TACACCAAGT
193529 ATGTATCGATACA
1 ATGTATCGATACA
193542 ATGTATCGATACA
1 ATGTATCGATACA
193555 CAAAAAAATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:196211 original size:20 final size:20
Alignment explanation
Indices: 196185--196243 Score: 66
Period size: 21 Copynumber: 2.9 Consensus size: 20
196175 CATTAGGCCA
196185 AATGTATCAATACAATTCT-T
1 AATGTATCAATACAATT-TAT
* * *
196205 GATGTATCGATATAATTTAAT
1 AATGTATCAATACAATTT-AT
196226 AATGTATCAATACAATTT
1 AATGTATCAATACAATTT
196244 CAAGGTTGTA
Statistics
Matches: 31, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
19 1 0.03
20 14 0.45
21 16 0.52
ACGTcount: A:0.41, C:0.10, G:0.08, T:0.41
Consensus pattern (20 bp):
AATGTATCAATACAATTTAT
Found at i:196324 original size:13 final size:13
Alignment explanation
Indices: 196306--196333 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
196296 ATATAATTTC
196306 ACAATGTATCGAT
1 ACAATGTATCGAT
196319 ACAATGTATCGAT
1 ACAATGTATCGAT
196332 AC
1 AC
196334 TTAGCAACTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.39, C:0.18, G:0.14, T:0.29
Consensus pattern (13 bp):
ACAATGTATCGAT
Found at i:199205 original size:12 final size:12
Alignment explanation
Indices: 199188--199212 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
199178 TAAACATAAG
199188 ATCAACATCAAA
1 ATCAACATCAAA
199200 ATCAACATCAAA
1 ATCAACATCAAA
199212 A
1 A
199213 GTGCAACATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.24, G:0.00, T:0.16
Consensus pattern (12 bp):
ATCAACATCAAA
Found at i:201062 original size:26 final size:26
Alignment explanation
Indices: 201032--201087 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
201022 TGTTTGAGTT
201032 AGCTCATGTTCTTCATCTTCTTTAAG
1 AGCTCATGTTCTTCATCTTCTTTAAG
*
201058 AGCTCATGTTCTTCATCTTTTTTAAG
1 AGCTCATGTTCTTCATCTTCTTTAAG
201084 AGCT
1 AGCT
201088 TCTTAAAGTT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.20, C:0.21, G:0.12, T:0.46
Consensus pattern (26 bp):
AGCTCATGTTCTTCATCTTCTTTAAG
Found at i:203406 original size:3 final size:3
Alignment explanation
Indices: 203398--203425 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
203388 GTGTCTTGCC
203398 CAT CAT CAT CAT CAT CAT CAT CAT CAT C
1 CAT CAT CAT CAT CAT CAT CAT CAT CAT C
203426 TTTACTTTGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.32, C:0.36, G:0.00, T:0.32
Consensus pattern (3 bp):
CAT
Found at i:206159 original size:470 final size:470
Alignment explanation
Indices: 205279--206213 Score: 1789
Period size: 470 Copynumber: 2.0 Consensus size: 470
205269 TACGTATACT
*
205279 TACTTGAAAAGCATTAATTCTTTGCTTGAAAAACATTTAGACTTGTCTCTAAAACATATTTTATA
1 TACTTGAAAAACATTAATTCTTTGCTTGAAAAACATTTAGACTTGTCTCTAAAACATATTTTATA
205344 TTAAAAATCATTTTAACACATGGTTTTAGAGAAATATGAGTCATGAAAACTTATTTTGTCTTTTT
66 TTAAAAATCATTTTAACACATGGTTTTAGAGAAATATGAGTCATGAAAACTTATTTTGTCTTTTT
*
205409 CAAAGTATTCTTGCAAAATCAAATATATTTTAGTTAGTTTGTTAGATCAAAACCAAATGCTTAAC
131 CAAAGTATTCTTACAAAATCAAATATATTTTAGTTAGTTTGTTAGATCAAAACCAAATGCTTAAC
*
205474 ATCTACCCACGCAGTTTCTGCGTATGCCACCTAGGGAGTCTTTGCCCGAAGTAGGGGACTTGGTC
196 ATCTACCCACGCAGTTTCTGCGTATGCCACCTAAGGAGTCTTTGCCCGAAGTAGGGGACTTGGTC
* *
205539 CCAGGGCCTTTGACAGCGTCATTGCAGGAACAAGCCTGACCTTCCATCGTAGCCATGCCCCATTC
261 CCAGGGCCTTTGACAGCGTCACTGCAGGAACAAGCCTGACCTTCCAACGTAGCCATGCCCCATTC
205604 GCCACACACGTGTGCTAACTGATCGCACACATAGTGATCGGGGACCTCACTATAGATTACTTGGA
326 GCCACACACGTGTGCTAACTGATCGCACACATAGTGATCGGGGACCTCACTATAGATTACTTGGA
*
205669 CTTCGATAAGCCTAAATCATCGAGGTTGGGCAATTAGTCACCAAAAACCATGACTTGATGGCATG
391 CTTCGATAAGCCTAAATCATCGAGGTGGGGCAATTAGTCACCAAAAACCATGACTTGATGGCATG
205734 CGTGACCTGATGGCA
456 CGTGACCTGATGGCA
205749 TACTTGAAAAACATTAATTCTTTGCTTGAAAAACATTTAGACTTGTCTCTAAAACATATTTTATA
1 TACTTGAAAAACATTAATTCTTTGCTTGAAAAACATTTAGACTTGTCTCTAAAACATATTTTATA
205814 TTAAAAATCATTTTAACACATGGTTTTAGAGAAATATGAGTCATGAAAACTTATTTTGTCTTTTT
66 TTAAAAATCATTTTAACACATGGTTTTAGAGAAATATGAGTCATGAAAACTTATTTTGTCTTTTT
*
205879 CAAAGTATTCTTACAAAATCAAATATTTTTTAGTTAGTTTGTTAGATCAAAACCAAATGCTTAAC
131 CAAAGTATTCTTACAAAATCAAATATATTTTAGTTAGTTTGTTAGATCAAAACCAAATGCTTAAC
*
205944 ATCTACCCACGTAGTTTCTGCGTATGCCACCTAAGGAGTCTTTGCCCGAAGTAGGGGACTTGGTC
196 ATCTACCCACGCAGTTTCTGCGTATGCCACCTAAGGAGTCTTTGCCCGAAGTAGGGGACTTGGTC
*
206009 CCAGGGCCTTTGACAGCGTCACTGCGGGAACAAGCCTGACCTTCCAACGTAGCCATGCCCCATTC
261 CCAGGGCCTTTGACAGCGTCACTGCAGGAACAAGCCTGACCTTCCAACGTAGCCATGCCCCATTC
206074 GCCACACACGTGTGCTAACTGATCGCACACATAGTGATCGGGGACCTCACTATAGATTACTTGGA
326 GCCACACACGTGTGCTAACTGATCGCACACATAGTGATCGGGGACCTCACTATAGATTACTTGGA
206139 CTTCGATAAGCCTAAATCATCGAGGTGGGGCAATTAGTCACCAAAAACCATGACTTGATGGCATG
391 CTTCGATAAGCCTAAATCATCGAGGTGGGGCAATTAGTCACCAAAAACCATGACTTGATGGCATG
206204 CGTGACCTGA
456 CGTGACCTGA
206214 ATTTTAATCA
Statistics
Matches: 456, Mismatches: 9, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
470 456 1.00
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.30
Consensus pattern (470 bp):
TACTTGAAAAACATTAATTCTTTGCTTGAAAAACATTTAGACTTGTCTCTAAAACATATTTTATA
TTAAAAATCATTTTAACACATGGTTTTAGAGAAATATGAGTCATGAAAACTTATTTTGTCTTTTT
CAAAGTATTCTTACAAAATCAAATATATTTTAGTTAGTTTGTTAGATCAAAACCAAATGCTTAAC
ATCTACCCACGCAGTTTCTGCGTATGCCACCTAAGGAGTCTTTGCCCGAAGTAGGGGACTTGGTC
CCAGGGCCTTTGACAGCGTCACTGCAGGAACAAGCCTGACCTTCCAACGTAGCCATGCCCCATTC
GCCACACACGTGTGCTAACTGATCGCACACATAGTGATCGGGGACCTCACTATAGATTACTTGGA
CTTCGATAAGCCTAAATCATCGAGGTGGGGCAATTAGTCACCAAAAACCATGACTTGATGGCATG
CGTGACCTGATGGCA
Found at i:209150 original size:6 final size:6
Alignment explanation
Indices: 209132--209161 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
209122 ATGATGCACT
*
209132 CCCACC CCTACC CCCACC CCCACC CCCACC
1 CCCACC CCCACC CCCACC CCCACC CCCACC
209162 TCTTAGAAGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.17, C:0.80, G:0.00, T:0.03
Consensus pattern (6 bp):
CCCACC
Found at i:211233 original size:79 final size:78
Alignment explanation
Indices: 211096--211324 Score: 246
Period size: 79 Copynumber: 2.9 Consensus size: 78
211086 TGGAGATGAC
* * * *
211096 AACGGGGCTGGAGTATCCCCTGACTATGGAAAATCGGTG-TCTAGAAATAAAATCAGGGTTGGAG
1 AACGGGGTTGGAGTAT-CCCTGATTGTGAAAAATCGGTGTTCTAGAAATAAAAT-AGGGTTGGAG
*
211160 TATCCCCTTGAAAAT
64 TATCCCCTCGAAAAT
* * *
211175 AACGGGGTTGGAGTATACCTGATTGTGAAAAATCGATGTTCTAGAAATAAAACTAGGGTCGGAGT
1 AACGGGGTTGGAGTATCCCTGATTGTGAAAAATCGGTGTTCTAGAAATAAAA-TAGGGTTGGAGT
211240 AT-CCCTCGAAAAT
65 ATCCCCTCGAAAAT
* * * * * * * * *
211253 AATGGGATTAGAGTATCCCCGATTGTGAAAAGATTGGTGTTGTAGAAATAAAATTGGGGTTGAAA
1 AACGGGGTTGGAGTATCCCTGATTGTGAAAA-ATCGGTGTTCTAGAAATAAAA-TAGGGTTGGAG
211318 TATCCCC
64 TATCCCC
211325 GATTATAAGA
Statistics
Matches: 125, Mismatches: 21, Indels: 7
0.82 0.14 0.05
Matches are distributed among these distances:
78 53 0.42
79 68 0.54
80 4 0.03
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.26
Consensus pattern (78 bp):
AACGGGGTTGGAGTATCCCTGATTGTGAAAAATCGGTGTTCTAGAAATAAAATAGGGTTGGAGTA
TCCCCTCGAAAAT
Found at i:211279 original size:78 final size:79
Alignment explanation
Indices: 211106--211306 Score: 237
Period size: 78 Copynumber: 2.5 Consensus size: 79
211096 AACGGGGCTG
* * * * *
211106 GAGTATCCCCTGACTATGGAAAATCGGTG-TCTAGAAATAAAATCAGGGTTGGAGTATCCCCTTG
1 GAGTATCCCC-GATTGTGAAAAATCGGTGTTCTAGAAATAAAATCAGGGTCGGAGTATCCCCTCG
* *
211170 AAAATAACGGGGTTG
65 AAAATAACGGGATTA
* * *
211185 GAGTATACCTGATTGTGAAAAATCGATGTTCTAGAAATAAAA-CTAGGGTCGGAGTAT-CCCTCG
1 GAGTATCCCCGATTGTGAAAAATCGGTGTTCTAGAAATAAAATC-AGGGTCGGAGTATCCCCTCG
*
211248 AAAATAATGGGATTA
65 AAAATAACGGGATTA
* *
211263 GAGTATCCCCGATTGTGAAAAGATTGGTGTTGTAGAAATAAAAT
1 GAGTATCCCCGATTGTGAAAA-ATCGGTGTTCTAGAAATAAAAT
211307 TGGGGTTGAA
Statistics
Matches: 102, Mismatches: 16, Indels: 7
0.82 0.13 0.06
Matches are distributed among these distances:
78 51 0.50
79 51 0.50
ACGTcount: A:0.35, C:0.13, G:0.25, T:0.27
Consensus pattern (79 bp):
GAGTATCCCCGATTGTGAAAAATCGGTGTTCTAGAAATAAAATCAGGGTCGGAGTATCCCCTCGA
AAATAACGGGATTA
Found at i:214596 original size:42 final size:41
Alignment explanation
Indices: 214458--214723 Score: 206
Period size: 41 Copynumber: 6.4 Consensus size: 41
214448 ATAGAATGGG
* * * *
214458 TCCTGCTCCTTGAGGACAAAGAAAAAAAGAAATAAAATGCA
1 TCCTGCTCTTTGAGGACAAAGGAAAAAGGAAATAAAGTGCA
* * *
214499 TCCTGCCCTTTGAAGACAAAGGAAAAACGAAATTAAATGTG--
1 TCCTGCTCTTTGAGGACAAAGGAAAAAGGAAA-TAAA-GTGCA
214540 TCCTGCAT-TTTGAGGACAAAGGAAAAAGGAGAATAAAGTGCA
1 TCCTGC-TCTTTGAGGACAAAGGAAAAAGGA-AATAAAGTGCA
* * * *
214582 TCCTGCTCTTTGAGGACAAAAGAAAAAAGAAAAAAAAGGGCA
1 TCCTGCTCTTTGAGGAC-AAAGGAAAAAGGAAATAAAGTGCA
*
214624 TCCTGTTCTTTGAGGACAAAAGGGAAAAGAAGGAAATGAAATGTG--
1 TCCTGCTCTTTGAGGAC-AAA-GG-AAA-AAGGAAAT-AAA-GTGCA
* * * * * * *
214669 TCATACTCTTTAAGGACAAAGGAGAGAGG-GA-AAA-TGCG
1 TCCTGCTCTTTGAGGACAAAGGAAAAAGGAAATAAAGTGCA
214707 TCCTGCTCTTTGAGGAC
1 TCCTGCTCTTTGAGGAC
214724 TAAAAAGTGT
Statistics
Matches: 182, Mismatches: 28, Indels: 33
0.75 0.12 0.14
Matches are distributed among these distances:
36 2 0.01
38 17 0.09
40 4 0.02
41 61 0.34
42 52 0.29
43 16 0.09
44 6 0.03
45 19 0.10
46 3 0.02
47 2 0.01
ACGTcount: A:0.42, C:0.15, G:0.24, T:0.20
Consensus pattern (41 bp):
TCCTGCTCTTTGAGGACAAAGGAAAAAGGAAATAAAGTGCA
Done.