Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold312
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1822960
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
File 3 of 12
Found at i:349028 original size:64 final size:64
Alignment explanation
Indices: 348890--349129 Score: 387
Period size: 64 Copynumber: 3.8 Consensus size: 64
348880 GCATCTTTCT
*
348890 CCTTTTCAAAAGCCCACACAAGTCGGTGGCAACCCTTCTCCAAAGCCCACACAAGTCGGTGGCAA
1 CCTTTTCTAAAGCCCACACAAGTCGGTGGCAACCCTTCT-CAAAGCCCACACAAGTCGGTGGCAA
*
348955 CCCTTTTCTAAAGCCCACACAAGTCGGTGGCAACCC-CCTCAAAGCCCACACAAGTCGGTGGCAA
1 -CCTTTTCTAAAGCCCACACAAGTCGGTGGCAACCCTTCTCAAAGCCCACACAAGTCGGTGGCAA
*
349019 CCTTCTTCTAAAGCCCACACAAGTCGGTGGCAACCCTTCTCAAAGCCCACACAAGTTGGTGGCAA
1 CCTT-TTCTAAAGCCCACACAAGTCGGTGGCAACCCTTCTCAAAGCCCACACAAGTCGGTGGCAA
* *
349084 CCCTCTCTAAAGCCCACACAAGTCGGTGGCAACCCTTCT--AAGCCCA
1 CCTTTTCTAAAGCCCACACAAGTCGGTGGCAACCCTTCTCAAAGCCCA
349130 ATATCGCTGG
Statistics
Matches: 166, Mismatches: 6, Indels: 8
0.92 0.03 0.04
Matches are distributed among these distances:
62 7 0.04
63 4 0.02
64 90 0.54
65 31 0.19
66 34 0.20
ACGTcount: A:0.28, C:0.37, G:0.18, T:0.17
Consensus pattern (64 bp):
CCTTTTCTAAAGCCCACACAAGTCGGTGGCAACCCTTCTCAAAGCCCACACAAGTCGGTGGCAA
Found at i:349229 original size:43 final size:43
Alignment explanation
Indices: 349117--349441 Score: 380
Period size: 43 Copynumber: 7.1 Consensus size: 43
349107 CGGTGGCAAC
* *
349117 CCTTCTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCA
1 CCTT-TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGG---CA
* *
349164 TCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA
1 -C--CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
349210 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
1 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
* *
349253 CCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA
1 ----C--CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
* *
349302 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTAGCAA
1 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGC-A
* * *
349346 CTTCTTCTTTAAGTCCAATGTAGTTGGCCTTGAATCAGCACATTGGCA
1 ---C--CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
349394 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
1 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
349437 CCTTT
1 CCTTT
349442 TCCATCTTTA
Statistics
Matches: 243, Mismatches: 20, Indels: 33
0.82 0.07 0.11
Matches are distributed among these distances:
43 121 0.50
44 1 0.00
45 3 0.01
46 2 0.01
47 2 0.01
48 2 0.01
49 109 0.45
50 3 0.01
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.31
Consensus pattern (43 bp):
CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
Found at i:349284 original size:92 final size:92
Alignment explanation
Indices: 349117--349494 Score: 621
Period size: 92 Copynumber: 4.1 Consensus size: 92
349107 CGGTGGCAAC
* * *
349117 CCTTCTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCATCATCTTTAAGTCCAATG
1 CCTT-TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATG
349182 TAGCTGGCCTTGAATCAGCACATTGGCA
65 TAGCTGGCCTTGAATCAGCACATTGGCA
349210 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGT
1 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGT
349275 AGCTGGCCTTGAATCAGCACATTGGCA
66 AGCTGGCCTTGAATCAGCACATTGGCA
* * * *
349302 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTAGCAACTTCTTCTTTAAGTCCAATGT
1 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGT
*
349367 AGTTGGCCTTGAATCAGCACATTGGCA
66 AGCTGGCCTTGAATCAGCACATTGGCA
*
349394 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTTCAA
1 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACC--TT-CATCTTTAAGTCCAA
*
349459 TGTAGCTGGCCTTGAATCAGCACATTGACA
63 TGTAGCTGGCCTTGAATCAGCACATTGGCA
349489 TCCTTT
1 -CCTTT
349495 TTCTCATCTT
Statistics
Matches: 266, Mismatches: 15, Indels: 5
0.93 0.05 0.02
Matches are distributed among these distances:
92 214 0.80
93 4 0.02
94 2 0.01
95 41 0.15
96 5 0.02
ACGTcount: A:0.26, C:0.25, G:0.17, T:0.31
Consensus pattern (92 bp):
CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGT
AGCTGGCCTTGAATCAGCACATTGGCA
Found at i:349436 original size:184 final size:187
Alignment explanation
Indices: 349117--349717 Score: 659
Period size: 184 Copynumber: 3.0 Consensus size: 187
349107 CGGTGGCAAC
* *
349117 CCTTCTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCATCATCTTTAAGTCCAATG
1 CCTT-TAAGCCCAATATCGCTGGCCTTGAATCAGCATATTAGCAACATCATCTTTAAGTCCAATG
349182 TAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATA
65 TAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATA
*
349247 TTGGCACC-TT-CATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA-
130 TTGGCACCTTTCCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGACAT
* * *
349302 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTAGCAACTTCTTCTTTAAGTCCAATGT
1 CCTTTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTAGCAACATCATCTTTAAGTCCAATGT
*
349367 AGTTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATAT
66 AGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATAT
*
349432 TGGCACCTTTTCCATCTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTGACATCCTTTTT
131 TGGCACC-TTTCCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGACA--------
349497 CT
187 -T
* * * *
349499 CATCTTTAAGCCCAATATCGTTGGCCGTGAATAAACATATTGGCATCTTTATCACTTTTCTCATC
1 C--CTTTAAGCCCAATATCGCTGGCCTTGAAT---C--A---GCAT-ATTAGCA--------A-C
* * *
349564 TTCATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCTA
46 ATCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C--CTTTAAGTCCA
* * * *
349629 ATGTCGCTGGCCTTGAATCAGCATATTGGCATCTTTTCCATCTTTAAGTTCAATGTAGCTGGCCT
105 ATATAGCTGGCCTTGAATCAGCATATTGGCA-CCTTTCCATCTTTAAGTCCAATGTAGCTGGCCT
*
349694 TGAATCAGCACATTCACAT
169 TGAATCAGCACATTGACAT
349713 CCTTT
1 CCTTT
349718 TTCTCTTCTT
Statistics
Matches: 355, Mismatches: 21, Indels: 53
0.83 0.05 0.12
Matches are distributed among these distances:
184 127 0.36
185 4 0.01
186 2 0.01
187 43 0.12
197 1 0.00
199 26 0.07
202 1 0.00
204 1 0.00
207 4 0.01
208 5 0.01
212 4 0.01
214 2 0.01
216 1 0.00
217 45 0.13
221 1 0.00
223 87 0.25
224 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.16, T:0.33
Consensus pattern (187 bp):
CCTTTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTAGCAACATCATCTTTAAGTCCAATGT
AGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATAT
TGGCACCTTTCCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGACAT
Found at i:349473 original size:52 final size:55
Alignment explanation
Indices: 349395--349879 Score: 304
Period size: 49 Copynumber: 8.7 Consensus size: 55
349385 ACATTGGCAC
* *
349395 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-CC-TTTTC-CAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCTCAT
* *
349447 CTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCTCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCTCAT
* * * * * * *
349502 CTTTAAGCCCAATATCGTTGGCCGTGAATAAACATATTGGCATCTTTATCACTTTTCTCATCTTC
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATT-G-A-C---ATC-C-TTT-T--TC-TC
349567 AT
54 AT
* * *
349569 CTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCA-CC----T-TCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCTCAT
* * * * *
349618 CTTTAAGTCTAATGTCGCTGGCCTTGAATCAGCATATTGGCAT-C-TTTTC-CAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCTCAT
* * * *
349670 CTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTCACATCCTTTTTCTCTT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCTCAT
* * * * * *
349725 CTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTGGCATCTTTATCACTTTTCTCATCTTC
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATT-G-A-C---ATC-C-TTT-T--TC-TC
349790 AT
54 AT
* * *
349792 CTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCA-CC----T-TCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCTCAT
* * * *
349841 CTTTAAGTCTAATGTCGCTAGCCTTGAATCAGCACATTG
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTG
349880 GCACATTTAT
Statistics
Matches: 349, Mismatches: 49, Indels: 73
0.74 0.10 0.15
Matches are distributed among these distances:
49 86 0.25
51 2 0.01
52 79 0.23
53 3 0.01
54 10 0.03
55 64 0.18
56 1 0.00
57 2 0.01
58 2 0.01
59 2 0.01
60 2 0.01
61 8 0.02
62 2 0.01
63 6 0.02
64 4 0.01
66 6 0.02
67 70 0.20
ACGTcount: A:0.24, C:0.25, G:0.15, T:0.36
Consensus pattern (55 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCTCAT
Found at i:349662 original size:116 final size:116
Alignment explanation
Indices: 349444--349890 Score: 368
Period size: 116 Copynumber: 3.9 Consensus size: 116
349434 GCACCTTTTC
* * *
349444 CATCTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCTCATCTTTAAG
1 CATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCA-CC----T-TCATCTTTAAG
* *
349509 CCCAATATCGTTGGCCGTGAATAAACATATTGGCATCTTTATCACTTTTCTCATCTT
60 CCCAATATCGCTGGCCGTGAATCAACATATTGGCATCTTTATCACTTTTCTCATCTT
* *
349566 CATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCTAAT
1 CATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGCCCAAT
* * * * **
349631 GTCGCTGGCCTTGAATCAGCATATTGGCATCTTT-TC-CATCTT-T-AAGTT
66 ATCGCTGGCCGTGAATCAACATATTGGCATCTTTATCAC-TTTTCTCATCTT
* * * * ** * * *** *
349679 CA-ATGT-AG--C--TGGC-CTTGAATCAGCACATTCA-CATCCTT--TTTC-TCTTCTTTAAGC
1 CATCTTTAAGTCCAATGTCGCTGGCCT-TG-A-A-TCAGCA-CATTGGCACCTTCATCTTTAAGC
*
349733 CCAATATCGTTGGCCGTGAATCAACATATTGGCATCTTTATCACTTTTCTCATCTT
61 CCAATATCGCTGGCCGTGAATCAACATATTGGCATCTTTATCACTTTTCTCATCTT
* *
349789 CATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCTAAT
1 CATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGCCCAAT
* * * * *
349854 GTCGCTAGCCTTGAATCAGCACATTGGCA-CATTTATC
66 ATCGCTGGCCGTGAATCAACATATTGGCATC-TTTATC
349891 TTTAAACCCA
Statistics
Matches: 249, Mismatches: 54, Indels: 50
0.71 0.15 0.14
Matches are distributed among these distances:
106 4 0.02
107 48 0.19
108 7 0.03
109 6 0.02
110 11 0.04
111 4 0.02
112 4 0.02
113 11 0.04
114 6 0.02
115 8 0.03
116 91 0.37
117 5 0.02
121 2 0.01
122 42 0.17
ACGTcount: A:0.23, C:0.25, G:0.15, T:0.36
Consensus pattern (116 bp):
CATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGCCCAAT
ATCGCTGGCCGTGAATCAACATATTGGCATCTTTATCACTTTTCTCATCTT
Found at i:349733 original size:223 final size:223
Alignment explanation
Indices: 349346--349883 Score: 926
Period size: 223 Copynumber: 2.4 Consensus size: 223
349336 ATATTAGCAA
* * * *
349346 CTTCTTCTTTAAGTCCAATGTAGTTGGCCTTGAATCAGCACATTGGCA----C--CTTTAAGTCC
1 CTTCATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCT
* *
349405 AATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTTCAATGTAGCTGGCC
66 AATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTTCAATGTAGCTGGCC
*
349470 TTGAATCAGCACATTGACATCCTTTTTCTCATCTTTAAGCCCAATATCGTTGGCCGTGAATAAAC
131 TTGAATCAGCACATTCACATCCTTTTTCTCATCTTTAAGCCCAATATCGTTGGCCGTGAATAAAC
349535 ATATTGGCATCTTTATCACTTTTCTCAT
196 ATATTGGCATCTTTATCACTTTTCTCAT
349563 CTTCATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCT
1 CTTCATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCT
*
349628 AATGTCGCTGGCCTTGAATCAGCATATTGGCATCTTTTCCATCTTTAAGTTCAATGTAGCTGGCC
66 AATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTTCAATGTAGCTGGCC
* *
349693 TTGAATCAGCACATTCACATCCTTTTTCTCTTCTTTAAGCCCAATATCGTTGGCCGTGAATCAAC
131 TTGAATCAGCACATTCACATCCTTTTTCTCATCTTTAAGCCCAATATCGTTGGCCGTGAATAAAC
349758 ATATTGGCATCTTTATCACTTTTCTCAT
196 ATATTGGCATCTTTATCACTTTTCTCAT
349786 CTTCATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCT
1 CTTCATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCT
* *
349851 AATGTCGCTAGCCTTGAATCAGCACATTGGCAC
66 AATGTCGCTGGCCTTGAATCAGCATATTGGCAC
349884 ATTTATCTTT
Statistics
Matches: 302, Mismatches: 13, Indels: 6
0.94 0.04 0.02
Matches are distributed among these distances:
217 45 0.15
221 1 0.00
223 256 0.85
ACGTcount: A:0.23, C:0.25, G:0.15, T:0.36
Consensus pattern (223 bp):
CTTCATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCT
AATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTTCAATGTAGCTGGCC
TTGAATCAGCACATTCACATCCTTTTTCTCATCTTTAAGCCCAATATCGTTGGCCGTGAATAAAC
ATATTGGCATCTTTATCACTTTTCTCAT
Found at i:349764 original size:107 final size:101
Alignment explanation
Indices: 349566--349771 Score: 259
Period size: 107 Copynumber: 2.0 Consensus size: 101
349556 TTCTCATCTT
* ** * *
349566 CATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCTAAT
1 CATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTCACACCTTCATCTTTAAGCCCAAT
* * *
349631 GTCGCTGGCCTTGAATCAGCATATTGGCATCTTTTC
66 ATCGCTGGCCGTGAATCAACATATTGGCATCTTTTC
* *
349667 CATCTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTCACATCCTTTTTCTCTTCTTTAAG
1 CATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTCACA-CC----T-TCATCTTTAAG
*
349732 CCCAATATCGTTGGCCGTGAATCAACATATTGGCATCTTT
60 CCCAATATCGCTGGCCGTGAATCAACATATTGGCATCTTT
349772 ATCACTTTTC
Statistics
Matches: 88, Mismatches: 11, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
101 41 0.47
102 2 0.02
106 1 0.01
107 44 0.50
ACGTcount: A:0.23, C:0.25, G:0.16, T:0.36
Consensus pattern (101 bp):
CATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTCACACCTTCATCTTTAAGCCCAAT
ATCGCTGGCCGTGAATCAACATATTGGCATCTTTTC
Found at i:349858 original size:49 final size:49
Alignment explanation
Indices: 349786--349895 Score: 184
Period size: 49 Copynumber: 2.2 Consensus size: 49
349776 CTTTTCTCAT
*
349786 CTTCATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCAC
1 CTTCATCTTTAAGTCCAATGTCGCTAGCCTTGAATCAGCACATTGGCAC
*
349835 CTTCATCTTTAAGTCTAATGTCGCTAGCCTTGAATCAGCACATTGGCAC
1 CTTCATCTTTAAGTCCAATGTCGCTAGCCTTGAATCAGCACATTGGCAC
* *
349884 ATTTATCTTTAA
1 CTTCATCTTTAA
349896 ACCCAATATC
Statistics
Matches: 57, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
49 57 1.00
ACGTcount: A:0.25, C:0.25, G:0.15, T:0.35
Consensus pattern (49 bp):
CTTCATCTTTAAGTCCAATGTCGCTAGCCTTGAATCAGCACATTGGCAC
Found at i:350601 original size:13 final size:13
Alignment explanation
Indices: 350583--350607 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
350573 CATAAAGTGT
350583 TGTATCGATACAA
1 TGTATCGATACAA
350596 TGTATCGATACA
1 TGTATCGATACA
350608 TAAGTTTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:350687 original size:13 final size:13
Alignment explanation
Indices: 350669--350693 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
350659 ATTACTCAAA
350669 TGTATCGATACAT
1 TGTATCGATACAT
350682 TGTATCGATACA
1 TGTATCGATACA
350694 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:356759 original size:19 final size:19
Alignment explanation
Indices: 356735--356785 Score: 93
Period size: 19 Copynumber: 2.7 Consensus size: 19
356725 TTTCAATGAT
356735 TTGTATCGATACATAAGTG
1 TTGTATCGATACATAAGTG
*
356754 TTGTATCGATACATAAGTT
1 TTGTATCGATACATAAGTG
356773 TTGTATCGATACA
1 TTGTATCGATACA
356786 ATGTATCGCT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 31 1.00
ACGTcount: A:0.31, C:0.12, G:0.18, T:0.39
Consensus pattern (19 bp):
TTGTATCGATACATAAGTG
Found at i:356856 original size:13 final size:13
Alignment explanation
Indices: 356838--356862 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
356828 ATTACTCAAA
356838 TGTATCGATACAT
1 TGTATCGATACAT
356851 TGTATCGATACA
1 TGTATCGATACA
356863 CTGATCTTCG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:356940 original size:52 final size:52
Alignment explanation
Indices: 356873--356998 Score: 216
Period size: 52 Copynumber: 2.4 Consensus size: 52
356863 CTGATCTTCG
* *
356873 ATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATGAAATGT
1 ATCGATACATGCAGGCAAATTTACCCAGACGTATCGATACACTATGAAATGT
* *
356925 ATCGATACATACAGGCAAATTTACCCAGACGTATCGATATACTATGAAATGT
1 ATCGATACATGCAGGCAAATTTACCCAGACGTATCGATACACTATGAAATGT
356977 ATCGATACATGCAGGCAAATTT
1 ATCGATACATGCAGGCAAATTT
356999 TCATATTTTG
Statistics
Matches: 69, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
52 69 1.00
ACGTcount: A:0.37, C:0.19, G:0.17, T:0.27
Consensus pattern (52 bp):
ATCGATACATGCAGGCAAATTTACCCAGACGTATCGATACACTATGAAATGT
Found at i:362529 original size:11 final size:12
Alignment explanation
Indices: 362498--362533 Score: 56
Period size: 12 Copynumber: 3.1 Consensus size: 12
362488 AAAAGTAAAC
362498 ACAAAACAAAAA
1 ACAAAACAAAAA
362510 ACAAAACAAAAA
1 ACAAAACAAAAA
*
362522 AC-ACACAAAAA
1 ACAAAACAAAAA
362533 A
1 A
362534 GTGCAAAGGC
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
11 9 0.39
12 14 0.61
ACGTcount: A:0.81, C:0.19, G:0.00, T:0.00
Consensus pattern (12 bp):
ACAAAACAAAAA
Found at i:363912 original size:31 final size:29
Alignment explanation
Indices: 363815--363919 Score: 122
Period size: 30 Copynumber: 3.5 Consensus size: 29
363805 ATACCTTCTT
* *
363815 AAAGTCCACGACACAGTGGCATTTTTTCCC
1 AAAGTCCACAACTCAGTGGCATTTTTT-CC
*
363845 AAAGCCCACAACTCAGTGGCATTTTTCTCC
1 AAAGTCCACAACTCAGTGGCATTTTT-TCC
363875 AAAGTCCACAACTCAGTGGCAATCTCTTTT-C
1 AAAGTCCACAACTCAGTGGC-AT-T-TTTTCC
*
363906 AAAGTCCACGACTC
1 AAAGTCCACAACTC
363920 TATGGCACCT
Statistics
Matches: 66, Mismatches: 5, Indels: 7
0.85 0.06 0.09
Matches are distributed among these distances:
30 44 0.67
31 17 0.26
32 2 0.03
33 3 0.05
ACGTcount: A:0.29, C:0.31, G:0.14, T:0.26
Consensus pattern (29 bp):
AAAGTCCACAACTCAGTGGCATTTTTTCC
Found at i:363982 original size:33 final size:33
Alignment explanation
Indices: 363935--364101 Score: 248
Period size: 33 Copynumber: 5.1 Consensus size: 33
363925 CACCTTTTTC
*
363935 TTCTC-AAAGCCCACACAAGTCGGTGGCAACCT
1 TTCTCTAAAGCCCACACAAGTCGGTGGCAACCA
* *
363967 TTTTCTAAAGCCCACACAAGTTGGTGGCAACC-
1 TTCTCTAAAGCCCACACAAGTCGGTGGCAACCA
** *
363999 CCCTCTAAAGCCCACACAAGTCGGCGGCAACCA
1 TTCTCTAAAGCCCACACAAGTCGGTGGCAACCA
*
364032 TTCTCTAAAGCCCACACAAGTTGGTGGCAACCA
1 TTCTCTAAAGCCCACACAAGTCGGTGGCAACCA
*
364065 TTCTCTAAAGCCCACACAAGTCGGTGGCAACCC
1 TTCTCTAAAGCCCACACAAGTCGGTGGCAACCA
364098 TTCT
1 TTCT
364102 AAGCCTAATA
Statistics
Matches: 120, Mismatches: 13, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
32 31 0.26
33 89 0.74
ACGTcount: A:0.28, C:0.34, G:0.18, T:0.20
Consensus pattern (33 bp):
TTCTCTAAAGCCCACACAAGTCGGTGGCAACCA
Found at i:364009 original size:65 final size:66
Alignment explanation
Indices: 363940--364101 Score: 263
Period size: 65 Copynumber: 2.5 Consensus size: 66
363930 TTTTCTTCTC
* *
363940 AAAGCCCACACAAGTCGGTGGCAACCTTTTTCTAAAGCCCACACAAGTTGGTGGCAACC-CCCTC
1 AAAGCCCACACAAGTCGGTGGCAACCATTCTCTAAAGCCCACACAAGTTGGTGGCAACCACCCTC
364004 T
66 T
* **
364005 AAAGCCCACACAAGTCGGCGGCAACCATTCTCTAAAGCCCACACAAGTTGGTGGCAACCATTCTC
1 AAAGCCCACACAAGTCGGTGGCAACCATTCTCTAAAGCCCACACAAGTTGGTGGCAACCACCCTC
364070 T
66 T
*
364071 AAAGCCCACACAAGTCGGTGGCAACCCTTCT
1 AAAGCCCACACAAGTCGGTGGCAACCATTCT
364102 AAGCCTAATA
Statistics
Matches: 89, Mismatches: 7, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
65 56 0.63
66 33 0.37
ACGTcount: A:0.29, C:0.34, G:0.19, T:0.19
Consensus pattern (66 bp):
AAAGCCCACACAAGTCGGTGGCAACCATTCTCTAAAGCCCACACAAGTTGGTGGCAACCACCCTC
T
Found at i:364210 original size:43 final size:43
Alignment explanation
Indices: 364115--364653 Score: 493
Period size: 49 Copynumber: 11.7 Consensus size: 43
364105 CCTAATATCA
*
364115 CTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAG
1 CTGGCCTTGAATCAGCATATTGGCA-C-----CTTTAAGTCCAATATAG
* * *
364164 CTGGCCTTGAATCAACACATTGGCACCTTTAAGTCCAATATCG
1 CTGGCCTTGAATCAGCATATTGGCACCTTTAAGTCCAATATAG
* *
364207 CTGGCCTTGAATCAGCATATTGGCACCTTAATCTTTAAGTCTAATGTAG
1 CTGGCCTTGAATCAGCATATTGGCA-C-----CTTTAAGTCCAATATAG
*
364256 CTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATAG
1 CTGGCCTTGAATCAGCATATTGGCACCTTTAAGTCCAATATAG
* ** *
364299 CTGGCCTTGAATTAGCATATTAACACCTTTATCTTTAAGTCCAATGTAG
1 CTGGCCTTGAATCAGCATATTGGCA-C-----CTTTAAGTCCAATATAG
* * *
364348 CTAGCCTTGAATCAACACATTGGCACCTTTAAGTCCAATATAG
1 CTGGCCTTGAATCAGCATATTGGCACCTTTAAGTCCAATATAG
*
364391 CTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAG
1 CTGGCCTTGAATCAGCATATTGGCA-C-----CTTTAAGTCCAATATAG
* *
364440 CTGGCCCTGAATCAGCACATTGGCACCTTTAAGTCCAATATAG
1 CTGGCCTTGAATCAGCATATTGGCACCTTTAAGTCCAATATAG
* * *
364483 CTGGCCTTAAATCAACATATTGGCACCTTTATCTTTAAGTCCAATGTAG
1 CTGGCCTTGAATCAGCATATTGGCA-C-----CTTTAAGTCCAATATAG
* * * *
364532 CTGGCCTTGAATCAGCACATTGGCACCTTCAAGCCCAATATCG
1 CTGGCCTTGAATCAGCATATTGGCACCTTTAAGTCCAATATAG
* * **
364575 TTGGCCATGAATCAGCATATTGGCATCTTCACCTTTAAGTCCAATAGCG
1 CTGGCCTTGAATCAGCATATTGG------CACCTTTAAGTCCAATATAG
*
364624 CTGGCCTTGAATTAGCATATTGGCACCTTT
1 CTGGCCTTGAATCAGCATATTGGCACCTTT
364654 TCCGTCTTGA
Statistics
Matches: 408, Mismatches: 52, Indels: 66
0.78 0.10 0.13
Matches are distributed among these distances:
43 189 0.46
44 4 0.01
48 5 0.01
49 210 0.51
ACGTcount: A:0.27, C:0.24, G:0.17, T:0.31
Consensus pattern (43 bp):
CTGGCCTTGAATCAGCATATTGGCACCTTTAAGTCCAATATAG
Found at i:364265 original size:92 final size:92
Alignment explanation
Indices: 364115--364653 Score: 855
Period size: 92 Copynumber: 5.9 Consensus size: 92
364105 CCTAATATCA
*
364115 CTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAAC
1 CTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGC
*
364180 ACATTGGCACCTTTAAGTCCAATATCG
66 ACATTGGCACCTTTAAGTCCAATATAG
* *
364207 CTGGCCTTGAATCAGCATATTGGCACCTTAATCTTTAAGTCTAATGTAGCTGGCCTTGAATCAGC
1 CTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGC
364272 ACATTGGCACCTTTAAGTCCAATATAG
66 ACATTGGCACCTTTAAGTCCAATATAG
* ** * *
364299 CTGGCCTTGAATTAGCATATTAACACCTTTATCTTTAAGTCCAATGTAGCTAGCCTTGAATCAAC
1 CTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGC
364364 ACATTGGCACCTTTAAGTCCAATATAG
66 ACATTGGCACCTTTAAGTCCAATATAG
*
364391 CTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCTGGCCCTGAATCAGC
1 CTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGC
364456 ACATTGGCACCTTTAAGTCCAATATAG
66 ACATTGGCACCTTTAAGTCCAATATAG
* *
364483 CTGGCCTTAAATCAACATATTGGCACCTTTATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGC
1 CTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGC
* * *
364548 ACATTGGCACCTTCAAGCCCAATATCG
66 ACATTGGCACCTTTAAGTCCAATATAG
* * * * * * *
364575 TTGGCCATGAATCAGCATATTGGCATCTTCACCTTTAAGTCCAATAG-CGCTGGCCTTGAATTAG
1 CTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAAT-GTAGCTGGCCTTGAATCAG
*
364639 CATATTGGCACCTTT
65 CACATTGGCACCTTT
364654 TCCGTCTTGA
Statistics
Matches: 412, Mismatches: 34, Indels: 2
0.92 0.08 0.00
Matches are distributed among these distances:
92 411 1.00
93 1 0.00
ACGTcount: A:0.27, C:0.24, G:0.17, T:0.31
Consensus pattern (92 bp):
CTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGC
ACATTGGCACCTTTAAGTCCAATATAG
Found at i:365521 original size:14 final size:14
Alignment explanation
Indices: 365502--365528 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
365492 TTTTGTCCAA
365502 ATGTATCGATACAT
1 ATGTATCGATACAT
365516 ATGTATCGATACA
1 ATGTATCGATACA
365529 AGGCCCCAAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.15, G:0.15, T:0.33
Consensus pattern (14 bp):
ATGTATCGATACAT
Found at i:365611 original size:19 final size:21
Alignment explanation
Indices: 365565--365618 Score: 76
Period size: 19 Copynumber: 2.7 Consensus size: 21
365555 TTTCAACAAT
365565 TTGTATCGATACAAACAGTAA
1 TTGTATCGATACAAACAGTAA
* *
365586 ATGTATCGATACATA-AGT-A
1 TTGTATCGATACAAACAGTAA
365605 TTGTATCGATACAA
1 TTGTATCGATACAA
365619 TGTATCACTA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
19 13 0.45
20 3 0.10
21 13 0.45
ACGTcount: A:0.41, C:0.13, G:0.15, T:0.31
Consensus pattern (21 bp):
TTGTATCGATACAAACAGTAA
Found at i:365672 original size:20 final size:20
Alignment explanation
Indices: 365647--365701 Score: 67
Period size: 20 Copynumber: 2.8 Consensus size: 20
365637 CTGCCAAGGA
365647 AATGTATCGATACATT-ATTC
1 AATGTATCGATACATTGA-TC
*
365667 AATGTATCAATACATTGATC
1 AATGTATCGATACATTGATC
**
365687 TTTGTATCGATACAT
1 AATGTATCGATACAT
365702 CTAGGAATTT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
20 29 0.97
21 1 0.03
ACGTcount: A:0.35, C:0.15, G:0.11, T:0.40
Consensus pattern (20 bp):
AATGTATCGATACATTGATC
Found at i:369136 original size:13 final size:13
Alignment explanation
Indices: 369118--369142 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
369108 TTCAATGATT
369118 TGTATCGATACAA
1 TGTATCGATACAA
369131 TGTATCGATACA
1 TGTATCGATACA
369143 TAAGTGTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:369232 original size:13 final size:13
Alignment explanation
Indices: 369214--369238 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
369204 ATTACTCAAA
369214 TGTATCGATACAT
1 TGTATCGATACAT
369227 TGTATCGATACA
1 TGTATCGATACA
369239 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:369291 original size:52 final size:52
Alignment explanation
Indices: 369247--369375 Score: 240
Period size: 52 Copynumber: 2.5 Consensus size: 52
369237 CACTGATCTT
*
369247 TGTATCGATACATGTAGGCAAATTTGCCCAGATGTATCGATACACTATGAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATGAAA
*
369299 TGTATCGATACATACAGGCAAATTTGCCCAGATGTATCGATACACTATGAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATGAAA
369351 TGTATCGATACATGCAGGCAAATTT
1 TGTATCGATACATGCAGGCAAATTT
369376 TCATATTTCG
Statistics
Matches: 74, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 74 1.00
ACGTcount: A:0.35, C:0.18, G:0.19, T:0.29
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATGAAA
Found at i:373488 original size:20 final size:20
Alignment explanation
Indices: 373463--373503 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
373453 TCATCCCTTG
373463 TGTCGTCCATAGCTTGCACT
1 TGTCGTCCATAGCTTGCACT
373483 TGTCGTCCATAGCTTGCACT
1 TGTCGTCCATAGCTTGCACT
373503 T
1 T
373504 ATAGTCATCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.15, C:0.29, G:0.20, T:0.37
Consensus pattern (20 bp):
TGTCGTCCATAGCTTGCACT
Found at i:375487 original size:34 final size:33
Alignment explanation
Indices: 375406--376213 Score: 222
Period size: 34 Copynumber: 26.0 Consensus size: 33
375396 TCTATGGCAC
* * *
375406 CCTTTTAAGTCCACAACTCCGTGGCACC-TTTC
1 CCTTTAAAGTCCACAACTCCATGGCACCTTTTT
* *
375438 CCTTTTAAAGCCCACAACTTCATGGCACTCTTTTT
1 CC-TTTAAAGTCCACAACTCCATGGCAC-CTTTTT
*
375473 CCTTTAAAGTCCACAACTCCATGGCACCTTCTT
1 CCTTTAAAGTCCACAACTCCATGGCACCTTTTT
* * * *** *
375506 CTTTTCAAAGTCTATAACTTTGTGGTA-C-----
1 CCTTT-AAAGTCCACAACTCCATGGCACCTTTTT
* ** **
375534 CCTTTTAAGTCCACAACAT-TGTGGC-GTTTTTT
1 CCTTTAAAGTCCACAAC-TCCATGGCACCTTTTT
* * * *
375566 TCTTCAAAGTCCACGACTCCGTGGCACTCTTTTCT
1 CCTTTAAAGTCCACAACTCCATGGCAC-CTTTT-T
*
375601 CC-TTAAAGCCCACAACTCCATGGCACC-----
1 CCTTTAAAGTCCACAACTCCATGGCACCTTTTT
* *
375628 CCTGT-AAGTCCACAACTCCGTGGCA-C-----
1 CCTTTAAAGTCCACAACTCCATGGCACCTTTTT
* * * *
375654 CCTTTTAAGCCCACAACTCCGTGGCA-TTTTTT
1 CCTTTAAAGTCCACAACTCCATGGCACCTTTTT
* * ** *
375686 TCTTCAAAGTCCATGACTCTATGGCA-CTCTTTT
1 CCTTTAAAGTCCACAACTCCATGGCACCT-TTTT
* * *
375719 CTCTTTAAAGCCCATAACTCCATGGTACC----T
1 C-CTTTAAAGTCCACAACTCCATGGCACCTTTTT
**
375749 -CTTT-AAGTCCACAACTCTGTGGCA-C-----
1 CCTTTAAAGTCCACAACTCCATGGCACCTTTTT
* * ***
375774 CCTTTTAAGCCCACAACTTTGTGGCACTCTTTTT
1 CCTTTAAAGTCCACAACTCCATGGCAC-CTTTTT
*
375808 CCTTTTAAGTCCACAACTCCATGGCA-C-----
1 CCTTTAAAGTCCACAACTCCATGGCACCTTTTT
* * *
375835 CCTTTTAAGCCCACAACTCCGTGGCACTCTTTTT
1 CCTTTAAAGTCCACAACTCCATGGCAC-CTTTTT
* * *
375869 CCTTTTAAGCCCACAACTCCATGGCATTCTTTTT
1 CCTTTAAAGTCCACAACTCCATGGCA-CCTTTTT
* *
375903 CCTTTTAAGTCCATAACTCCATGGCA-C-----
1 CCTTTAAAGTCCACAACTCCATGGCACCTTTTT
* * *
375930 CCTTTTAAGCCCACAACTCTATGGCACTCTTTTT
1 CCTTTAAAGTCCACAACTCCATGGCAC-CTTTTT
* * * *
375964 CCTTTTAAGCCCATAACTCCGTGGCA-C-----
1 CCTTTAAAGTCCACAACTCCATGGCACCTTTTT
* * *
375991 CCTTTTAAGCCCACAACTCCGTGGCACTCTTTTT
1 CCTTTAAAGTCCACAACTCCATGGCAC-CTTTTT
* * * *
376025 CCTTTTAAGCCCATAACTCCGTGGCA-C-----
1 CCTTTAAAGTCCACAACTCCATGGCACCTTTTT
* * *
376052 CCTTTTAAGCCCACAACTCCGTGGCA-CTAGTTTT
1 CCTTTAAAGTCCACAACTCCATGGCACCT--TTTT
* * * **
376086 CCTTTTAAGCCCACAACTCCGTGGCATTTTTTTT
1 CCTTTAAAGTCCACAACTCCATGGCA-CCTTTTT
* *
376120 CCTTTTAAGTCCACAACTCCGTGGCA-C-----
1 CCTTTAAAGTCCACAACTCCATGGCACCTTTTT
* * * *
376147 CCTTTTAAGTCCACAACTCCGTGGCATCTTTCT
1 CCTTTAAAGTCCACAACTCCATGGCACCTTTTT
* * * *
376180 CCTTTTAAGCCCACAAGT-CAGTGGCACCCTTTT
1 CCTTTAAAGTCCACAACTCCA-TGGCACCTTTTT
376213 C
1 C
376214 AAAAGCCCAC
Statistics
Matches: 615, Mismatches: 89, Indels: 143
0.73 0.11 0.17
Matches are distributed among these distances:
26 10 0.02
27 210 0.34
28 11 0.02
29 4 0.01
30 1 0.00
31 1 0.00
32 44 0.07
33 62 0.10
34 263 0.43
35 8 0.01
36 1 0.00
ACGTcount: A:0.21, C:0.33, G:0.12, T:0.33
Consensus pattern (33 bp):
CCTTTAAAGTCCACAACTCCATGGCACCTTTTT
Found at i:375646 original size:61 final size:61
Alignment explanation
Indices: 375572--376111 Score: 340
Period size: 61 Copynumber: 8.9 Consensus size: 61
375562 TTTTTCTTCA
* * * *
375572 AAGTCCACGACTCCGTGGCACTCTTTTCTCCTTAAAGCCCACAACTCCATGGCACCCCTGT
1 AAGTCCACAACTCCGTGGCACTCTTTTCTCCTTTAAGCCCACAACTCCGTGGCACCCCTTT
***
375633 AAGTCCACAACTCCGTGGCAC-C----CT--TTTAAGCCCACAACTCCGTGGCATTTTTTTCTTC
1 AAGTCCACAACTCCGTGGCACTCTTTTCTCCTTTAAGCCCACAACTCCGTGGCA----CCCCTT-
*
375691 A
61 T
** ** * * * *
375692 AAGTCCATGACTCTATGGCACTCTTTTCT-CTTTAAAGCCCATAACTCCATGGTACCTCTTT
1 AAGTCCACAACTCCGTGGCACTCTTTTCTCCTTT-AAGCCCACAACTCCGTGGCACCCCTTT
* **
375753 AAGTCCACAACTCTGTGGCAC-C----CT--TTTAAGCCCACAACTTTGTGGCACTCTTTTTCCT
1 AAGTCCACAACTCCGTGGCACTCTTTTCTCCTTTAAGCCCACAACTCCGTGGCAC-C-----CC-
375811 TTT
59 TTT
*
375814 AAGTCCACAACTCCATGGCAC-C----CT--TTTAAGCCCACAACTCCGTGGCACTCTTTTTCCT
1 AAGTCCACAACTCCGTGGCACTCTTTTCTCCTTTAAGCCCACAACTCCGTGGCAC-C-----CC-
375872 TTT
59 TTT
* * * * * * *
375875 AAGCCCACAACTCCATGGCATTCTTTT-TCCTTTTAAGTCCATAACTCCATGGCACCCTTTT
1 AAGTCCACAACTCCGTGGCACTCTTTTCTCC-TTTAAGCCCACAACTCCGTGGCACCCCTTT
* ** * *
375936 AAGCCCACAACTCTATGGCACTCTTTT-TCCTTTTAAGCCCATAACTCCGTGGCACCCTTTT
1 AAGTCCACAACTCCGTGGCACTCTTTTCTCC-TTTAAGCCCACAACTCCGTGGCACCCCTTT
* * *
375997 AAGCCCACAACTCCGTGGCACTCTTTT-TCCTTTTAAGCCCATAACTCCGTGGCACCCTTTT
1 AAGTCCACAACTCCGTGGCACTCTTTTCTCC-TTTAAGCCCACAACTCCGTGGCACCCCTTT
* * *
376058 AAGCCCACAACTCCGTGGCACTAGTTTTC-CTTTTAAGCCCACAACTCCGTGGCA
1 AAGTCCACAACTCCGTGGCACT-CTTTTCTCCTTTAAGCCCACAACTCCGTGGCA
376112 TTTTTTTTCC
Statistics
Matches: 404, Mismatches: 46, Indels: 58
0.80 0.09 0.11
Matches are distributed among these distances:
54 37 0.09
55 4 0.01
56 4 0.01
58 2 0.00
59 17 0.04
60 4 0.01
61 280 0.69
62 11 0.03
64 2 0.00
65 4 0.01
66 17 0.04
67 1 0.00
68 21 0.05
ACGTcount: A:0.22, C:0.34, G:0.13, T:0.31
Consensus pattern (61 bp):
AAGTCCACAACTCCGTGGCACTCTTTTCTCCTTTAAGCCCACAACTCCGTGGCACCCCTTT
Found at i:375686 original size:27 final size:27
Alignment explanation
Indices: 375606--376270 Score: 306
Period size: 27 Copynumber: 22.0 Consensus size: 27
375596 TTTCTCCTTA
* * *
375606 AAGCCCACAACTCCATGGCACCCCTGT
1 AAGCCCACAACTCCGTGGCACCCTTTT
*
375633 AAGTCCACAACTCCGTGGCACCCTTTT
1 AAGCCCACAACTCCGTGGCACCCTTTT
***
375660 AAGCCCACAACTCCGTGGCATTTTTTTCTT
1 AAGCCCACAACTCCGTGGCA--CCCTT-TT
* ** **
375690 CAAAGTCCATGACTCTATGGCACTCTTTTCTCTTT
1 --AAGCCCACAACTCCGTGGCAC-C----CT-TTT
* * *
375725 AAAGCCCATAACTCCATGGTA-CCTCTTT
1 -AAGCCCACAACTCCGTGGCACCCT-TTT
* *
375753 AAGTCCACAACTCTGTGGCACCCTTTT
1 AAGCCCACAACTCCGTGGCACCCTTTT
**
375780 AAGCCCACAACTTTGTGGCACTCTTTTTCCTTTT
1 AAGCCCACAACTCCGTGGCA--C-----CCTTTT
* *
375814 AAGTCCACAACTCCATGGCACCCTTTT
1 AAGCCCACAACTCCGTGGCACCCTTTT
375841 AAGCCCACAACTCCGTGGCACTCTTTTTCCTTTT
1 AAGCCCACAACTCCGTGGCA--C-----CCTTTT
*
375875 AAGCCCACAACTCCATGGCATTCTTTTTCCTTTT
1 AAGCCCACAACTCCGTGGCA--C-----CCTTTT
* * *
375909 AAGTCCATAACTCCATGGCACCCTTTT
1 AAGCCCACAACTCCGTGGCACCCTTTT
**
375936 AAGCCCACAACTCTATGGCACTCTTTTTCCTTTT
1 AAGCCCACAACTCCGTGGCA--C-----CCTTTT
*
375970 AAGCCCATAACTCCGTGGCACCCTTTT
1 AAGCCCACAACTCCGTGGCACCCTTTT
375997 AAGCCCACAACTCCGTGGCACTCTTTTTCCTTTT
1 AAGCCCACAACTCCGTGGCA--C-----CCTTTT
*
376031 AAGCCCATAACTCCGTGGCACCCTTTT
1 AAGCCCACAACTCCGTGGCACCCTTTT
376058 AAGCCCACAACTCCGTGGCACTAGTTTTCCTTTT
1 AAGCCCACAACTCCGTGGCAC-------CCTTTT
*
376092 AAGCCCACAACTCCGTGGCATTTTTTTTCCTTTT
1 AAGCCCACAACTCCGTGGCA-------CCCTTTT
*
376126 AAGTCCACAACTCCGTGGCACCCTTTT
1 AAGCCCACAACTCCGTGGCACCCTTTT
*
376153 AAGTCCACAACTCCGTGGCATCTTTCTCCTTTT
1 AAGCCCACAACTCCGTGGCA-----C-CCTTTT
* *
376186 AAGCCCACAAGTCAGTGGCACCCTTTT
1 AAGCCCACAACTCCGTGGCACCCTTTT
* * *
376213 CAAAAGCCCACAAGTCGGTGGCACCTCTTTCA
1 ---AAGCCCACAACTCCGTGGCACC-CTTT-T
* * *
376245 AAGCCCACAAGTCAGTGGCAACCTTT
1 AAGCCCACAACTCCGTGGCACCCTTT
376271 AAAAGCACAT
Statistics
Matches: 517, Mismatches: 56, Indels: 129
0.74 0.08 0.18
Matches are distributed among these distances:
27 208 0.40
28 14 0.03
29 26 0.05
30 23 0.04
31 4 0.01
32 21 0.04
33 23 0.04
34 194 0.38
35 3 0.01
36 1 0.00
ACGTcount: A:0.22, C:0.34, G:0.13, T:0.31
Consensus pattern (27 bp):
AAGCCCACAACTCCGTGGCACCCTTTT
Found at i:375687 original size:120 final size:120
Alignment explanation
Indices: 375385--375840 Score: 475
Period size: 120 Copynumber: 3.7 Consensus size: 120
375375 AGGGCGAGTC
* * * ** * * *
375385 AAGTCCACGACTCTATGGCACCCTTTTAAGTCCACAACTCCGTGGCACCTTTCCCTTTTAAAGCC
1 AAGTCCACAACTCTGTGGCACCCTTTTAAGCCCACAACTCCGTGGCATTTTTTCC-TTCAAAGTC
* *
375450 CACAACTTCATGGCACTCTTTT-TCCTTTAAAGTCCACAACTCCATGGCACCTTCTTCTTTT
65 CACAACTCCATGGCACTCTTTTCTCC-TTAAAGCCCACAACTCCATGGCACC--C--C-TTT
* * * * * * * *
375511 CAAAGTCTATAACTTTGTGGTACCCTTTTAAGTCCACAACAT-TGTGGCGTTTTTTTCTTCAAAG
1 --AAGTCCACAACTCTGTGGCACCCTTTTAAGCCCACAAC-TCCGTGGCATTTTTTCCTTCAAAG
* * *
375575 TCCACGACTCCGTGGCACTCTTTTCTCCTTAAAGCCCACAACTCCATGGCACCCCTGT
63 TCCACAACTCCATGGCACTCTTTTCTCCTTAAAGCCCACAACTCCATGGCACCCCTTT
* *
375633 AAGTCCACAACTCCGTGGCACCCTTTTAAGCCCACAACTCCGTGGCATTTTTTTCTTCAAAGTCC
1 AAGTCCACAACTCTGTGGCACCCTTTTAAGCCCACAACTCCGTGGCATTTTTTCCTTCAAAGTCC
** * * * * *
375698 ATGACTCTATGGCACTCTTTTCTCTTTAAAGCCCATAACTCCATGGTACCTCTTT
66 ACAACTCCATGGCACTCTTTTCTCCTTAAAGCCCACAACTCCATGGCACCCCTTT
** **
375753 AAGTCCACAACTCTGTGGCACCCTTTTAAGCCCACAACTTTGTGGCACTCTTTTTCCTTTTAAGT
1 AAGTCCACAACTCTGTGGCACCCTTTTAAGCCCACAACTCCGTGGCA-T-TTTTTCCTTCAAAGT
*
375818 CCACAACTCCATGGCACCCTTTT
64 CCACAACTCCATGGCACTCTTTT
375841 AAGCCCACAA
Statistics
Matches: 278, Mismatches: 45, Indels: 16
0.82 0.13 0.05
Matches are distributed among these distances:
119 1 0.00
120 146 0.53
121 1 0.00
122 33 0.12
123 1 0.00
125 1 0.00
127 50 0.18
128 44 0.16
129 1 0.00
ACGTcount: A:0.22, C:0.32, G:0.13, T:0.33
Consensus pattern (120 bp):
AAGTCCACAACTCTGTGGCACCCTTTTAAGCCCACAACTCCGTGGCATTTTTTCCTTCAAAGTCC
ACAACTCCATGGCACTCTTTTCTCCTTAAAGCCCACAACTCCATGGCACCCCTTT
Found at i:375903 original size:95 final size:92
Alignment explanation
Indices: 375632--376243 Score: 455
Period size: 95 Copynumber: 6.6 Consensus size: 92
375622 GGCACCCCTG
* * * * * ** *
375632 TAAGTCCACAACTCCGTGGCACCCTTTTAAGCCCACAACTCCGTGGCATTTTTTTCTTCAAAGTC
1 TAAGCCCACAACTCCATGGCACCCTTTTAAGCCCACAACTCCGTGGCACTCTTTCCTTTTAAGCC
** **
375697 CATGACTCTATGGCA-CTCTTTTCTCTTT
66 CACAACTCCGTGGCATCT-TTTTC-CTTT
* * * * *
375725 AAAGCCCATAACTCCATGGTA-CCTCTTTAAGTCCACAACTCTGTGGCA--C---CCTTTTAAGC
1 TAAGCCCACAACTCCATGGCACCCT-TTTAAGCCCACAACTCCGTGGCACTCTTTCCTTTTAAGC
**
375784 CCACAACTTTGTGGCACTCTTTTTCCTTT
65 CCACAACTCCGTGGCA-TCTTTTTCCTTT
*
375813 TAAGTCCACAACTCCATGGCACCCTTTTAAGCCCACAACTCCGTGGCACTCTTTTTCCTTTTAAG
1 TAAGCCCACAACTCCATGGCACCCTTTTAAGCCCACAACTCCGTGGCACTC--TTTCCTTTTAAG
*
375878 CCCACAACTCCATGGCATTCTTTTTCCTTT
64 CCCACAACTCCGTGGCA-TCTTTTTCCTTT
* * **
375908 TAAGTCCATAACTCCATGGCACCCTTTTAAGCCCACAACTCTATGGCACTCTTTTTCCTTTTAAG
1 TAAGCCCACAACTCCATGGCACCCTTTTAAGCCCACAACTCCGTGGCACTC--TTTCCTTTTAAG
*
375973 CCCATAACTCCGTGGCA-C-----CCTTT
64 CCCACAACTCCGTGGCATCTTTTTCCTTT
* *
375996 TAAGCCCACAACTCCGTGGCACTCTTTTTCCTTTTAAGCCCATAACTCCGTGGCA--C---CCTT
1 TAAGCCCACAACTCCATGGCA--C-----CCTTTTAAGCCCACAACTCCGTGGCACTCTTTCCTT
376056 TTAAGCCCACAACTCCGTGGCA-CTAGTTTTCCTTT
59 TTAAGCCCACAACTCCGTGGCATCT--TTTTCCTTT
* * *
376091 TAAGCCCACAACTCCGTGGCATTTTTTTTCCTTTTAAGTCCACAACTCCGTGGCA--C---CCTT
1 TAAGCCCACAACTCCATGGCA-------CCCTTTTAAGCCCACAACTCCGTGGCACTCTTTCCTT
* *
376151 TTAAGTCCACAACTCCGTGGCATCTTTCTCCTTT
59 TTAAGCCCACAACTCCGTGGCATCTTTTTCCTTT
* * *
376185 TAAGCCCACAAGT-CAGTGGCACCCTTTTCAAAAGCCCACAAGTCGGTGGCACCTCTTTC
1 TAAGCCCACAACTCCA-TGGCACCCTTTT---AAGCCCACAACTCCGTGGCA-CTCTTTC
376244 AAAGCCCACA
Statistics
Matches: 428, Mismatches: 50, Indels: 79
0.77 0.09 0.14
Matches are distributed among these distances:
87 6 0.01
88 109 0.25
89 8 0.02
90 21 0.05
92 3 0.01
93 41 0.10
94 25 0.06
95 211 0.49
96 3 0.01
100 1 0.00
ACGTcount: A:0.21, C:0.33, G:0.13, T:0.32
Consensus pattern (92 bp):
TAAGCCCACAACTCCATGGCACCCTTTTAAGCCCACAACTCCGTGGCACTCTTTCCTTTTAAGCC
CACAACTCCGTGGCATCTTTTTCCTTT
Found at i:375932 original size:156 final size:149
Alignment explanation
Indices: 375707--376264 Score: 656
Period size: 156 Copynumber: 3.6 Consensus size: 149
375697 CATGACTCTA
* * * *
375707 TGGCACTC-TTTTCTCTTTAAAGCCCATAACTCCATGGTA-CCTCTTTAAGTCCACAACTCTGTG
1 TGGCACTCTTTTTC-CTTTTAAGCCCACAACTCCATGGCACCCT-TTTAAGTCCACAACTCCGTG
* *
375770 GCACCCTTTTAAGCCCACAACTTTGTGGCACTCTTTTTCCTTTTAAGTCCACAACTCCATGGCAC
64 GCACCCTTTTAAGCCCACAACTCTGTGGCACTCTTTTTCCTTTTAAGTCCACAACTCCGTGGCAC
375835 CCTTTTAAGCCCACAACTCCG
129 CCTTTTAAGCCCACAACTCCG
*
375856 TGGCACTCTTTTTCCTTTTAAGCCCACAACTCCATGGCATTCTTTTTCCTTTTAAGTCCATAACT
1 TGGCACTCTTTTTCCTTTTAAGCCCACAACTCCATGGCA--C-----CCTTTTAAGTCCACAACT
* * * *
375921 CCATGGCACCCTTTTAAGCCCACAACTCTATGGCACTCTTTTTCCTTTTAAGCCCATAACTCCGT
59 CCGTGGCACCCTTTTAAGCCCACAACTCTGTGGCACTCTTTTTCCTTTTAAGTCCACAACTCCGT
375986 GGCACCCTTTTAAGCCCACAACTCCG
124 GGCACCCTTTTAAGCCCACAACTCCG
* * *
376012 TGGCACTCTTTTTCCTTTTAAGCCCATAACTCCGTGGCACCCTTTTAAGCCCACAACTCCGTGGC
1 TGGCACTCTTTTTCCTTTTAAGCCCACAACTCCATGGCACCCTTTTAAGTCCACAACTCCGTGGC
* * *
376077 ACTAGTTTTCCTTTTAAGCCCACAACTCCGTGGCATTTTTTTTCCTTTTAAGTCCACAACTCCGT
66 AC-------CCTTTTAAGCCCACAACTCTGTGGCACTCTTTTTCCTTTTAAGTCCACAACTCCGT
*
376142 GGCACCCTTTTAAGTCCACAACTCCG
124 GGCACCCTTTTAAGCCCACAACTCCG
* * * * *
376168 TGGCA-TCTTTCTCCTTTTAAGCCCACAAGT-CAGTGGCACCCTTTTCAAAAGCCCACAAGTCGG
1 TGGCACTCTTTTTCCTTTTAAGCCCACAACTCCA-TGGCACCCTTTT---AAGTCCACAACTCCG
* * *
376231 TGGCACCTCTTTCAAAGCCCACAAGTCAGTGGCA
62 TGGCACC-CTTT-TAAGCCCACAACTCTGTGGCA
376265 ACCTTTAAAA
Statistics
Matches: 355, Mismatches: 32, Indels: 40
0.83 0.07 0.09
Matches are distributed among these distances:
149 54 0.15
150 5 0.01
151 1 0.00
152 4 0.01
153 18 0.05
154 2 0.01
155 34 0.10
156 215 0.61
157 3 0.01
158 19 0.05
ACGTcount: A:0.22, C:0.33, G:0.13, T:0.32
Consensus pattern (149 bp):
TGGCACTCTTTTTCCTTTTAAGCCCACAACTCCATGGCACCCTTTTAAGTCCACAACTCCGTGGC
ACCCTTTTAAGCCCACAACTCTGTGGCACTCTTTTTCCTTTTAAGTCCACAACTCCGTGGCACCC
TTTTAAGCCCACAACTCCG
Found at i:376209 original size:60 final size:60
Alignment explanation
Indices: 376086--376270 Score: 200
Period size: 60 Copynumber: 3.1 Consensus size: 60
376076 CACTAGTTTT
* * * * *
376086 CCTTTTAAGCCCACAACTCCGTGGCATTTTTTTTCCTTTTAAGTCCACAACTCCGTGGCAC
1 CCTTTTAAGCCCACAACTCCGTGGCA-TCTTTCTCCTTTTAAGCCCACAAGTCAGTGGCAC
*
376147 CCTTTTAAGTCCACAACTCCGTGGCATCTTTCTCCTTTTAAGCCCACAAGTCAGTGGCAC
1 CCTTTTAAGCCCACAACTCCGTGGCATCTTTCTCCTTTTAAGCCCACAAGTCAGTGGCAC
* * * *
376207 CCTTTTCAAAAGCCCACAAGTCGGTGGCA-C---CT-CTTTCAAAGCCCACAAGTCAGTGGCAA
1 CCTTTT---AAGCCCACAACTCCGTGGCATCTTTCTCCTTT-TAAGCCCACAAGTCAGTGGCAC
376266 CCTTT
1 CCTTT
376271 AAAAGCACAT
Statistics
Matches: 109, Mismatches: 11, Indels: 10
0.84 0.08 0.08
Matches are distributed among these distances:
58 4 0.04
59 27 0.25
60 35 0.32
61 25 0.23
62 1 0.01
63 17 0.16
ACGTcount: A:0.23, C:0.33, G:0.15, T:0.29
Consensus pattern (60 bp):
CCTTTTAAGCCCACAACTCCGTGGCATCTTTCTCCTTTTAAGCCCACAAGTCAGTGGCAC
Found at i:376257 original size:29 final size:30
Alignment explanation
Indices: 376186--376270 Score: 129
Period size: 30 Copynumber: 2.9 Consensus size: 30
376176 TTCTCCTTTT
376186 AAGCCCACAAGTCAGTGGCACCCTTTTCAA
1 AAGCCCACAAGTCAGTGGCACCCTTTTCAA
*
376216 AAGCCCACAAGTCGGTGGCA-CCTCTTTC-A
1 AAGCCCACAAGTCAGTGGCACCCT-TTTCAA
*
376245 AAGCCCACAAGTCAGTGGCAACCTTT
1 AAGCCCACAAGTCAGTGGCACCCTTT
376271 AAAAGCACAT
Statistics
Matches: 51, Mismatches: 2, Indels: 5
0.88 0.03 0.09
Matches are distributed among these distances:
29 25 0.49
30 26 0.51
ACGTcount: A:0.28, C:0.33, G:0.19, T:0.20
Consensus pattern (30 bp):
AAGCCCACAAGTCAGTGGCACCCTTTTCAA
Found at i:376315 original size:59 final size:59
Alignment explanation
Indices: 376186--376310 Score: 150
Period size: 57 Copynumber: 2.2 Consensus size: 59
376176 TTCTCCTTTT
* * * *
376186 AAGCCCACAAGTCAGTGGCACCCTTTTCAAAAGCCCACAAGTCGGTGGCACCTCTTTCA
1 AAGCCCACAAGTCAGTGGCAACCTTTTCAAAAGCACACAAATCGGTGGCACCTCTTTAA
* *
376245 AAGCCCACAAGTCAGTGGCAACC-TTT-AAAAGCACATAAATTGGT-GCAACCAT-TTTAA
1 AAGCCCACAAGTCAGTGGCAACCTTTTCAAAAGCACACAAATCGGTGGC-ACC-TCTTTAA
376302 AAGCCCACA
1 AAGCCCACA
376311 CAAGTTGGTG
Statistics
Matches: 58, Mismatches: 6, Indels: 6
0.83 0.09 0.09
Matches are distributed among these distances:
56 2 0.03
57 30 0.52
58 4 0.07
59 22 0.38
ACGTcount: A:0.34, C:0.30, G:0.17, T:0.20
Consensus pattern (59 bp):
AAGCCCACAAGTCAGTGGCAACCTTTTCAAAAGCACACAAATCGGTGGCACCTCTTTAA
Found at i:376439 original size:39 final size:39
Alignment explanation
Indices: 376385--376671 Score: 277
Period size: 39 Copynumber: 6.9 Consensus size: 39
376375 GTCATTAAGA
* * *
376385 CCAATGTCGCTGGCCTTGAATAAGCACATTGGCACAAGC
1 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACAAGC
*
376424 CCAATATCGCTGGCCTTGAATCAGCATATTGACACAAGC
1 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACAAGC
*
376463 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTCTAAGA
1 CCAATATCGCTGGCCTTGAATCAGCATATTGGCA--------C-AAGC
* * ** *
376511 CCAATGTCGCTGGCCTTGAATCAGCACATTGGCATGAGT
1 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACAAGC
*
376550 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTCTAAGA
1 CCAATATCGCTGGCCTTGAATCAGCATATTGGCA--------C-AAGC
* * *
376598 CCAATGTCGCTGGCCTTGAATCAGCACATTGGCATAAGC
1 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACAAGC
*
376637 CCAATATCGCTGGCCTTCAATCAGCATATTGGCAC
1 CCAATATCGCTGGCCTTGAATCAGCATATTGGCAC
376672 CTTGTCTTTA
Statistics
Matches: 206, Mismatches: 24, Indels: 36
0.77 0.09 0.14
Matches are distributed among these distances:
39 136 0.66
47 1 0.00
48 69 0.33
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (39 bp):
CCAATATCGCTGGCCTTGAATCAGCATATTGGCACAAGC
Found at i:376562 original size:126 final size:126
Alignment explanation
Indices: 376337--376580 Score: 427
Period size: 126 Copynumber: 1.9 Consensus size: 126
376327 TCTTCTAAGT
376337 CCAATATCGCTGGCCTTAAATCAGCATATTGGCACCTTGTCATTAAGACCAATGTCGCTGGCCTT
1 CCAATATCGCTGGCCTTAAATCAGCATATTGGCACCTTGTCATTAAGACCAATGTCGCTGGCCTT
376402 GAATAAGCACATTGGCACAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGACACAAGC
66 GAATAAGCACATTGGCACAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGACACAAGC
*
376463 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTC-TCTAAGACCAATGTCGCTGGCCT
1 CCAATATCGCTGGCCTTAAATCAGCATATTGGCACCTTGTCAT-TAAGACCAATGTCGCTGGCCT
* ** *
376527 TGAATCAGCACATTGGCATGAGTCCAATATCGCTGGCCTTGAATCAGCATATTG
65 TGAATAAGCACATTGGCACAAGCCCAATATCGCTGGCCTTGAATCAGCATATTG
376581 GCACCTTGTC
Statistics
Matches: 112, Mismatches: 5, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
125 1 0.01
126 111 0.99
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.26
Consensus pattern (126 bp):
CCAATATCGCTGGCCTTAAATCAGCATATTGGCACCTTGTCATTAAGACCAATGTCGCTGGCCTT
GAATAAGCACATTGGCACAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGACACAAGC
Found at i:376755 original size:87 final size:87
Alignment explanation
Indices: 376424--376747 Score: 513
Period size: 87 Copynumber: 3.7 Consensus size: 87
376414 TGGCACAAGC
* * * *
376424 CCAATATCGCTGGCCTTGAATCAGCATATTGACACAAGCCCAATATCGCTGGCCTTGAATCAGCA
1 CCAATGTCGCTGGCCTTGAATCAGCACATTGGCATAAGCCCAATATCGCTGGCCTTGAATCAGCA
376489 TATTGGCACCTTGTCTCTAAGA
66 TATTGGCACCTTGTCTCTAAGA
* *
376511 CCAATGTCGCTGGCCTTGAATCAGCACATTGGCATGAGTCCAATATCGCTGGCCTTGAATCAGCA
1 CCAATGTCGCTGGCCTTGAATCAGCACATTGGCATAAGCCCAATATCGCTGGCCTTGAATCAGCA
376576 TATTGGCACCTTGTCTCTAAGA
66 TATTGGCACCTTGTCTCTAAGA
*
376598 CCAATGTCGCTGGCCTTGAATCAGCACATTGGCATAAGCCCAATATCGCTGGCCTTCAATCAGCA
1 CCAATGTCGCTGGCCTTGAATCAGCACATTGGCATAAGCCCAATATCGCTGGCCTTGAATCAGCA
*
376663 TATTGGCACCTTGTCTTTAAGA
66 TATTGGCACCTTGTCTCTAAGA
** * * * * *
376685 CCAATGTCGCTGGCCTTGAATCAAAACATTGGCCTAAACCCAATATCGTTGACCGTGAATCAG
1 CCAATGTCGCTGGCCTTGAATCAGCACATTGGCATAAGCCCAATATCGCTGGCCTTGAATCAG
376748 TGTATTGGTC
Statistics
Matches: 219, Mismatches: 18, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
87 219 1.00
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.27
Consensus pattern (87 bp):
CCAATGTCGCTGGCCTTGAATCAGCACATTGGCATAAGCCCAATATCGCTGGCCTTGAATCAGCA
TATTGGCACCTTGTCTCTAAGA
Found at i:377508 original size:20 final size:20
Alignment explanation
Indices: 377483--377537 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 20
377473 CTGCCAAGGA
377483 AATGTATCGATACATT-ATTC
1 AATGTATCGATACATTGA-TC
377503 AATGTATCGATACATTGATC
1 AATGTATCGATACATTGATC
**
377523 TTTGTATCGATACAT
1 AATGTATCGATACAT
377538 CTGGGAATTT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
20 31 0.97
21 1 0.03
ACGTcount: A:0.33, C:0.15, G:0.13, T:0.40
Consensus pattern (20 bp):
AATGTATCGATACATTGATC
Found at i:380152 original size:13 final size:13
Alignment explanation
Indices: 380134--380158 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
380124 TTCAATGATT
380134 TGTATCGATACAA
1 TGTATCGATACAA
380147 TGTATCGATACA
1 TGTATCGATACA
380159 TAAGTGTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:380307 original size:52 final size:52
Alignment explanation
Indices: 380263--380391 Score: 240
Period size: 52 Copynumber: 2.5 Consensus size: 52
380253 CACTGATCTT
*
380263 TGTATCGATACATGTAGGCAAATTTGCCCAGATGTATCGATACACTATGAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATGAAA
*
380315 TGTATCGATACATACAGGCAAATTTGCCCAGATGTATCGATACACTATGAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATGAAA
380367 TGTATCGATACATGCAGGCAAATTT
1 TGTATCGATACATGCAGGCAAATTT
380392 TCATATTTCG
Statistics
Matches: 74, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 74 1.00
ACGTcount: A:0.35, C:0.18, G:0.19, T:0.29
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATGAAA
Found at i:387022 original size:13 final size:13
Alignment explanation
Indices: 387007--387057 Score: 61
Period size: 13 Copynumber: 3.9 Consensus size: 13
386997 ATCACACAAA
387007 AAAAAC-AAAAAC
1 AAAAACAAAAAAC
*
387019 AAAAACCAAAAAAA
1 AAAAA-CAAAAAAC
387033 AAAAACAAAAAAC
1 AAAAACAAAAAAC
387046 ACAAAA-AAAAAA
1 A-AAAACAAAAAA
387058 AGAGAATGCA
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
12 5 0.15
13 15 0.44
14 14 0.41
ACGTcount: A:0.86, C:0.14, G:0.00, T:0.00
Consensus pattern (13 bp):
AAAAACAAAAAAC
Found at i:387031 original size:22 final size:23
Alignment explanation
Indices: 387000--387058 Score: 88
Period size: 21 Copynumber: 2.7 Consensus size: 23
386990 AAGGAAAATC
387000 ACACAAAAAAAACAAAAAC-AAAA
1 ACACAAAAAAAA-AAAAACAAAAA
387023 AC-C-AAAAAAAAAAAACAAAAA
1 ACACAAAAAAAAAAAAACAAAAA
387044 ACACAAAAAAAAAAA
1 ACACAAAAAAAAAAA
387059 GAGAATGCAA
Statistics
Matches: 33, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
20 6 0.18
21 13 0.39
22 2 0.06
23 12 0.36
ACGTcount: A:0.85, C:0.15, G:0.00, T:0.00
Consensus pattern (23 bp):
ACACAAAAAAAAAAAAACAAAAA
Found at i:387681 original size:31 final size:28
Alignment explanation
Indices: 387627--387683 Score: 78
Period size: 31 Copynumber: 1.9 Consensus size: 28
387617 ATTTTGTTGG
*
387627 AAATAAACCATTATCTTTCTTGTCAAAT
1 AAATAAACCATTATCTTTATTGTCAAAT
387655 AAATCAAACCATATCATCTTTATTGTCAA
1 AAAT-AAACCAT-T-ATCTTTATTGTCAA
387684 GCAAGCCTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
28 4 0.16
29 7 0.28
30 1 0.04
31 13 0.52
ACGTcount: A:0.40, C:0.19, G:0.04, T:0.37
Consensus pattern (28 bp):
AAATAAACCATTATCTTTATTGTCAAAT
Found at i:388371 original size:30 final size:31
Alignment explanation
Indices: 388336--388573 Score: 288
Period size: 30 Copynumber: 7.8 Consensus size: 31
388326 TCTTCTAATC
* *
388336 TCTCTTCTT-AAAGTCCAGGACTTAGTGGCA
1 TCTCTTCTTCAAAGTCCACGACTCAGTGGCA
* *
388366 TCTCTTC-CCAAAGTCCACGACTCAATGGCA
1 TCTCTTCTTCAAAGTCCACGACTCAGTGGCA
* *
388396 TCTTTTCTTCAAAGTCCACAACTCAGTGGCA
1 TCTCTTCTTCAAAGTCCACGACTCAGTGGCA
* *
388427 TCTCTT-TTCTAAGTCCATGACTCAGTGGCA
1 TCTCTTCTTCAAAGTCCACGACTCAGTGGCA
* *
388457 TCCTTTTCTTCCAAGTCCACGACTCAGTGGCA
1 T-CTCTTCTTCAAAGTCCACGACTCAGTGGCA
* * *
388489 TTTTTTTCTTCAAAGTCCACAACTCAGTGGCA
1 -TCTCTTCTTCAAAGTCCACGACTCAGTGGCA
*
388521 TCTCTTC-TCAAAGTCCACGACTCAATGGCA
1 TCTCTTCTTCAAAGTCCACGACTCAGTGGCA
*
388551 TCTCTTC-CCAAAGTCCACGACTC
1 TCTCTTCTTCAAAGTCCACGACTC
388574 TATGGCACCC
Statistics
Matches: 180, Mismatches: 23, Indels: 10
0.85 0.11 0.05
Matches are distributed among these distances:
30 96 0.53
31 34 0.19
32 49 0.27
33 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.14, T:0.31
Consensus pattern (31 bp):
TCTCTTCTTCAAAGTCCACGACTCAGTGGCA
Found at i:388517 original size:94 final size:91
Alignment explanation
Indices: 388336--388580 Score: 348
Period size: 94 Copynumber: 2.7 Consensus size: 91
388326 TCTTCTAATC
* * *
388336 TCTCTTCTTAAAGTCCAGGACTTAGTGGCATCTCTTCCCAAAGTCCACGACTCAATGGCATCTTT
1 TCTCTTCTCAAAGTCCACGACTCAGTGGCATCTCTTCCCAAAGTCCACGACTCAATGGCATCTTT
388401 TCTTCAAAGTCCACAACTCAGTGGCA
66 TCTTCAAAGTCCACAACTCAGTGGCA
* * * * *
388427 TCTCTTTTCTAAGTCCATGACTCAGTGGCATCCTTTTCTTCC-AAGTCCACGACTCAGTGGCATT
1 TCTCTTCTCAAAGTCCACGACTCAGTGGCAT-CTCTTC--CCAAAGTCCACGACTCAATGGCA-T
*
388491 TTTTTCTTCAAAGTCCACAACTCAGTGGCA
62 CTTTTCTTCAAAGTCCACAACTCAGTGGCA
* *
388521 TCTCTTCTCAAAGTCCACGACTCAATGGCATCTCTTCCCAAAGTCCACGACTCTATGGCA
1 TCTCTTCTCAAAGTCCACGACTCAGTGGCATCTCTTCCCAAAGTCCACGACTCAATGGCA
388581 CCCTTTTAAG
Statistics
Matches: 134, Mismatches: 15, Indels: 9
0.85 0.09 0.06
Matches are distributed among these distances:
91 28 0.21
92 23 0.17
93 24 0.18
94 59 0.44
ACGTcount: A:0.24, C:0.31, G:0.15, T:0.31
Consensus pattern (91 bp):
TCTCTTCTCAAAGTCCACGACTCAGTGGCATCTCTTCCCAAAGTCCACGACTCAATGGCATCTTT
TCTTCAAAGTCCACAACTCAGTGGCA
Found at i:388655 original size:34 final size:32
Alignment explanation
Indices: 388581--389371 Score: 127
Period size: 34 Copynumber: 25.5 Consensus size: 32
388571 CTCTATGGCA
* *
388581 CCCTTTTAAGTCCACAACTCCGTGGCACCTTT
1 CCCTTTAAAGTCCACAACTCCATGGCACCTTT
* *
388613 CCCTTTTAAAGCCCACAACTTCATGGCACTCTTTT
1 CCC-TTTAAAGTCCACAACTCCATGGCAC-C-TTT
*
388648 TCCTTTAAAGTCCACAACTCCATGGCACCTTCT
1 CCCTTTAAAGTCCACAACTCCATGGCACCTT-T
* * * * ** *
388681 TCTTTTCAAAGTCTATAACTCTGTGG-----TA
1 CCCTTT-AAAGTCCACAACTCCATGGCACCTTT
* * ** **
388709 CCCTTTTAAGTCCACAACACTGTGGCATTTTT
1 CCCTTTAAAGTCCACAACTCCATGGCACCTTT
** * * *
388741 TTCTTCAAAGTCCACGACTCCGTGGCACTCTTTT
1 CCCTTTAAAGTCCACAACTCCATGGCAC-C-TTT
* *
388775 CTCTTTAAAGCCCACAACTCCATGGCA-C---
1 CCCTTTAAAGTCCACAACTCCATGGCACCTTT
* **
388803 CCCTGT-AAGTCCACAACTCTGTGGCA-----
1 CCCTTTAAAGTCCACAACTCCATGGCACCTTT
* * * **
388829 CCCTTTTAAGCCCACAACTCCGTGGCATTTTT
1 CCCTTTAAAGTCCACAACTCCATGGCACCTTT
** * ** **
388861 TTCTTCAAAGTCCATGACTCTGTGGCACTCTTTT
1 CCCTTTAAAGTCCACAACTCCATGGCAC-C-TTT
* * *
388895 CTCTTTAAAGCCCATAACTCCATGGCACC--T
1 CCCTTTAAAGTCCACAACTCCATGGCACCTTT
**
388925 --CTTT-AAGTCCACAACTCTGTGGCA-----
1 CCCTTTAAAGTCCACAACTCCATGGCACCTTT
* * ***
388949 CCCTTTTAAGCCCACAACTTTGTGGCACTCTTTT
1 CCCTTTAAAGTCCACAACTCCATGGCAC-C-TTT
* *
388983 TCCTTTTAAGTCCACAACTCCATGGCA-----
1 CCCTTTAAAGTCCACAACTCCATGGCACCTTT
* * * *
389010 CCCTTTTAAGCCCACAACTCCGTCGCACTCTTTTT
1 CCCTTTAAAGTCCACAACTCCATGGCAC-C--TTT
* * *
389045 CCTTTTAAA-CCCACAACTCCATGGCATTCTTTT
1 CCCTTTAAAGTCCACAACTCCATGGCA--CCTTT
* * * *
389078 TCCTTTTAAGTCCATAACTCCGTGGCA-----
1 CCCTTTAAAGTCCACAACTCCATGGCACCTTT
* * *
389105 CCCTTTTAAGCCCACAACTCTATGGCACTCTTTT
1 CCCTTTAAAGTCCACAACTCCATGGCAC-C-TTT
* * * * *
389139 TCCTTTTAAGCCCATAACTCCGTGGCA-----
1 CCCTTTAAAGTCCACAACTCCATGGCACCTTT
* * *
389166 CCCTTTTAAGCCCACAACTCCGTGGCACTCTTTT
1 CCCTTTAAAGTCCACAACTCCATGGCAC-C-TTT
* * * * *
389200 TCCTTTTAAGCCCATAACTCCGTGGCA-----
1 CCCTTTAAAGTCCACAACTCCATGGCACCTTT
* * * *
389227 CCCTTTTAAGCCCACAACTCCGTGGCACTAGTTT
1 CCCTTTAAAGTCCACAACTCCATGGCAC--CTTT
* * * * **
389261 TCCTTTTAAGCCCACAACTCCGTGGCATTTTTTT
1 CCCTTTAAAGTCCACAACTCCATGGCA--CCTTT
* * *
389295 TCCTTTTAAGTCCACAACTCCGTGGCA-----
1 CCCTTTAAAGTCCACAACTCCATGGCACCTTT
* * *
389322 CCCTTTTAAGTCCACAACTCCGTGGCATCTTT
1 CCCTTTAAAGTCCACAACTCCATGGCACCTTT
* *
389354 CTCCTTTTAAGCCCACAA
1 C-CCTTTAAAGTCCACAA
389372 GTCAGTGGCA
Statistics
Matches: 584, Mismatches: 105, Indels: 139
0.71 0.13 0.17
Matches are distributed among these distances:
26 9 0.02
27 205 0.35
28 12 0.02
29 1 0.00
30 1 0.00
32 47 0.08
33 53 0.09
34 243 0.42
35 12 0.02
36 1 0.00
ACGTcount: A:0.21, C:0.33, G:0.12, T:0.33
Consensus pattern (32 bp):
CCCTTTAAAGTCCACAACTCCATGGCACCTTT
Found at i:388761 original size:93 final size:93
Alignment explanation
Indices: 388644--388828 Score: 221
Period size: 93 Copynumber: 2.0 Consensus size: 93
388634 CATGGCACTC
* * * * **
388644 TTTTTCCTTTAAAGTCCACAACTCCATGGCAC-CTTCTTCT-TTTCAAAGTCTATAACTCTGTGG
1 TTTTTCCTTCAAAGTCCACAACTCCATGGCACTCTT-TTCTCTTT-AAAGCCCACAACTCCATGG
* * *
388707 TACCCTTTTAAGTCCACAACACTGTGGCAT
64 CACCCCTGTAAGTCCACAACACTGTGGCAT
* * *
388737 TTTTTTCTTCAAAGTCCACGACTCCGTGGCACTCTTTTCTCTTTAAAGCCCACAACTCCATGGCA
1 TTTTTCCTTCAAAGTCCACAACTCCATGGCACTCTTTTCTCTTTAAAGCCCACAACTCCATGGCA
*
388802 CCCCTGTAAGTCCACAACTCTGTGGCA
66 CCCCTGTAAGTCCACAACACTGTGGCA
388829 CCCTTTTAAG
Statistics
Matches: 77, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
93 71 0.92
94 6 0.08
ACGTcount: A:0.23, C:0.31, G:0.13, T:0.34
Consensus pattern (93 bp):
TTTTTCCTTCAAAGTCCACAACTCCATGGCACTCTTTTCTCTTTAAAGCCCACAACTCCATGGCA
CCCCTGTAAGTCCACAACACTGTGGCAT
Found at i:388827 original size:61 final size:61
Alignment explanation
Indices: 388748--389287 Score: 356
Period size: 61 Copynumber: 8.9 Consensus size: 61
388738 TTTTTCTTCA
* * * *
388748 AAGTCCACGACTCCGTGGCACTCTTTTCTCTTTAAAGCCCACAACTCCATGGCACCCCTGT
1 AAGTCCACAACTCCGTGGCACTCTTTTCTCTTTTAAGCCCACAACTCCGTGGCACCCCTTT
* ***
388809 AAGTCCACAACTCTGTGGCA--C----C-CTTTTAAGCCCACAACTCCGTGGCATTTTTTTCTTC
1 AAGTCCACAACTCCGTGGCACTCTTTTCTCTTTTAAGCCCACAACTCCGTGGCA----CCCCTT-
*
388867 A
61 T
** * * * * *
388868 AAGTCCATGACTCTGTGGCACTCTTTTCTCTTTAAAGCCCATAACTCCATGGCACCTCTTT
1 AAGTCCACAACTCCGTGGCACTCTTTTCTCTTTTAAGCCCACAACTCCGTGGCACCCCTTT
* **
388929 AAGTCCACAACTCTGTGGCA--C----C-CTTTTAAGCCCACAACTTTGTGGCACTCTTTTTCCT
1 AAGTCCACAACTCCGTGGCACTCTTTTCTCTTTTAAGCCCACAACTCCGTGGCAC-C-----CC-
388987 TTT
59 TTT
* *
388990 AAGTCCACAACTCCATGGCA--C----C-CTTTTAAGCCCACAACTCCGTCGCACTCTTTTTCCT
1 AAGTCCACAACTCCGTGGCACTCTTTTCTCTTTTAAGCCCACAACTCCGTGGCAC-C-----CC-
389048 TTT
59 TTT
** * * * * *
389051 AAACCCACAACTCCATGGCATTCTTTT-TCCTTTTAAGTCCATAACTCCGTGGCACCCTTTT
1 AAGTCCACAACTCCGTGGCACTCTTTTCT-CTTTTAAGCCCACAACTCCGTGGCACCCCTTT
* ** * *
389112 AAGCCCACAACTCTATGGCACTCTTTT-TCCTTTTAAGCCCATAACTCCGTGGCACCCTTTT
1 AAGTCCACAACTCCGTGGCACTCTTTTCT-CTTTTAAGCCCACAACTCCGTGGCACCCCTTT
* * *
389173 AAGCCCACAACTCCGTGGCACTCTTTT-TCCTTTTAAGCCCATAACTCCGTGGCACCCTTTT
1 AAGTCCACAACTCCGTGGCACTCTTTTCT-CTTTTAAGCCCACAACTCCGTGGCACCCCTTT
* *
389234 AAGCCCACAACTCCGTGGCACTAGTTTTC-CTTTTAAGCCCACAACTCCGTGGCA
1 AAGTCCACAACTCCGTGGCACT-CTTTTCTCTTTTAAGCCCACAACTCCGTGGCA
389288 TTTTTTTTCC
Statistics
Matches: 406, Mismatches: 44, Indels: 58
0.80 0.09 0.11
Matches are distributed among these distances:
54 44 0.11
55 3 0.01
58 2 0.00
59 20 0.05
60 1 0.00
61 279 0.69
62 9 0.02
63 1 0.00
65 1 0.00
66 22 0.05
67 1 0.00
68 23 0.06
ACGTcount: A:0.21, C:0.34, G:0.13, T:0.31
Consensus pattern (61 bp):
AAGTCCACAACTCCGTGGCACTCTTTTCTCTTTTAAGCCCACAACTCCGTGGCACCCCTTT
Found at i:388856 original size:120 final size:121
Alignment explanation
Indices: 388473--389016 Score: 555
Period size: 120 Copynumber: 4.5 Consensus size: 121
388463 TCTTCCAAGT
* * * *
388473 CCACGACTCAGTGGCATTTTTTTCTTCAAAGTCCACAACTCAGTGGCA-TCTCTTCTC---AAAG
1 CCACAACTCCGTGGCATTTTTTTCTTCAAAGTCCACAACTCCGTGGCACTCTTTTCTCTTTAAAG
* * * ** * * *
388534 TCCACGACTCAATGGCATCTCTTCC-CAAAGTCCACGACTCTATGGCACCCTTTTAAGT
66 CCCACAACTCCATGGCA-C-C-TCCTTTAAGTCCACAACTCTGTGGCACCCTTTTAAGC
** ** * * * *
388592 CCACAACTCCGTGGCACCTTTCCCTTTTAAAGCCCACAACTTCATGGCACTCTTTT-TCCTTTAA
1 CCACAACTCCGTGGCATTTTTTTC-TTCAAAGTCCACAACTCCGTGGCACTCTTTTCT-CTTTAA
* * * * *
388656 AGTCCACAACTCCATGGCACCTTCTTCTTTTCAAAGTCTATAACTCTGTGGTACCCTTTTAAGT
64 AGCCCACAACTCCATGGCACC-TC--C-TTT--AAGTCCACAACTCTGTGGCACCCTTTTAAGC
* * *
388720 CCACAACACTGTGGCATTTTTTTCTTCAAAGTCCACGACTCCGTGGCACTCTTTTCTCTTTAAAG
1 CCACAACTCCGTGGCATTTTTTTCTTCAAAGTCCACAACTCCGTGGCACTCTTTTCTCTTTAAAG
*
388785 CCCACAACTCCATGGCACC-CCTGTAAGTCCACAACTCTGTGGCACCCTTTTAAGC
66 CCCACAACTCCATGGCACCTCCTTTAAGTCCACAACTCTGTGGCACCCTTTTAAGC
** *
388840 CCACAACTCCGTGGCATTTTTTTCTTCAAAGTCCATGACTCTGTGGCACTCTTTTCTCTTTAAAG
1 CCACAACTCCGTGGCATTTTTTTCTTCAAAGTCCACAACTCCGTGGCACTCTTTTCTCTTTAAAG
*
388905 CCCATAACTCCATGGCACCT-CTTTAAGTCCACAACTCTGTGGCACCCTTTTAAGC
66 CCCACAACTCCATGGCACCTCCTTTAAGTCCACAACTCTGTGGCACCCTTTTAAGC
** * ** * *
388960 CCACAACTTTGTGGCACTCTTTTTCCTTTTAAGTCCACAACTCCATGGCACCCTTTT
1 CCACAACTCCGTGGCA-T-TTTTTTCTTCAAAGTCCACAACTCCGTGGCACTCTTTT
389017 AAGCCCACAA
Statistics
Matches: 355, Mismatches: 54, Indels: 29
0.81 0.12 0.07
Matches are distributed among these distances:
119 18 0.05
120 174 0.49
121 7 0.02
122 36 0.10
123 2 0.01
124 20 0.06
125 1 0.00
127 52 0.15
128 45 0.13
ACGTcount: A:0.22, C:0.33, G:0.13, T:0.32
Consensus pattern (121 bp):
CCACAACTCCGTGGCATTTTTTTCTTCAAAGTCCACAACTCCGTGGCACTCTTTTCTCTTTAAAG
CCCACAACTCCATGGCACCTCCTTTAAGTCCACAACTCTGTGGCACCCTTTTAAGC
Found at i:388862 original size:27 final size:27
Alignment explanation
Indices: 388777--389446 Score: 307
Period size: 27 Copynumber: 22.1 Consensus size: 27
388767 ACTCTTTTCT
* *
388777 CTTTAAAGCCCACAACTCCATGGCACC
1 CTTTTAAGCCCACAACTCCGTGGCACC
* * * *
388804 CCTGTAAGTCCACAACTCTGTGGCACC
1 CTTTTAAGCCCACAACTCCGTGGCACC
**
388831 CTTTTAAGCCCACAACTCCGTGGCATTTT
1 CTTTTAAGCCCACAACTCCGTGGCA--CC
* * ** *
388860 TTTCTTCAAAGTCCATGACTCTGTGGCACTC
1 CTT-TT--AAGCCCACAACTCCGTGGCAC-C
* *
388891 TTTTCTCTTTAAAGCCCATAACTCCATGGCA-C
1 ----CT-TTT-AAGCCCACAACTCCGTGGCACC
* *
388923 CTCTTTAAGTCCACAACTCTGTGGCACC
1 CT-TTTAAGCCCACAACTCCGTGGCACC
**
388951 CTTTTAAGCCCACAACTTTGTGGCACTCTTTTTC
1 CTTTTAAGCCCACAACTCCGTGGCA--C-----C
* *
388985 CTTTTAAGTCCACAACTCCATGGCACC
1 CTTTTAAGCCCACAACTCCGTGGCACC
*
389012 CTTTTAAGCCCACAACTCCGTCGCACTCTTTTTC
1 CTTTTAAGCCCACAACTCCGTGGCA--C-----C
* *
389046 CTTTTAAACCCACAACTCCATGGCATTCTTTTTC
1 CTTTTAAGCCCACAACTCCGTGGCA--C-----C
* *
389080 CTTTTAAGTCCATAACTCCGTGGCACC
1 CTTTTAAGCCCACAACTCCGTGGCACC
**
389107 CTTTTAAGCCCACAACTCTATGGCACTCTTTTTC
1 CTTTTAAGCCCACAACTCCGTGGCA--C-----C
*
389141 CTTTTAAGCCCATAACTCCGTGGCACC
1 CTTTTAAGCCCACAACTCCGTGGCACC
389168 CTTTTAAGCCCACAACTCCGTGGCACTCTTTTTC
1 CTTTTAAGCCCACAACTCCGTGGCA--C-----C
*
389202 CTTTTAAGCCCATAACTCCGTGGCACC
1 CTTTTAAGCCCACAACTCCGTGGCACC
389229 CTTTTAAGCCCACAACTCCGTGGCACTAGTTTTC
1 CTTTTAAGCCCACAACTCCGTGGCAC-------C
*
389263 CTTTTAAGCCCACAACTCCGTGGCATTTTTTTTC
1 CTTTTAAGCCCACAACTCCGTGGCA-------CC
*
389297 CTTTTAAGTCCACAACTCCGTGGCACC
1 CTTTTAAGCCCACAACTCCGTGGCACC
*
389324 CTTTTAAGTCCACAACTCCGTGGCATCTTTCTC
1 CTTTTAAGCCCACAACTCCGTGGCA-----C-C
* *
389357 CTTTTAAGCCCACAAGTCAGTGGCACC
1 CTTTTAAGCCCACAACTCCGTGGCACC
* *
389384 CTTTTCAAAAGCCCACAAGTCGGTGGCACCC
1 CTTTT---AAGCCCACAACTCCGTGGCA-CC
* * * *
389415 CTTTCAAAGCCCACAAGTCAGTGGCAAC
1 CTTT-TAAGCCCACAACTCCGTGGCACC
389443 CTTT
1 CTTT
389447 AAAAGCACAT
Statistics
Matches: 513, Mismatches: 65, Indels: 129
0.73 0.09 0.18
Matches are distributed among these distances:
27 207 0.40
28 15 0.03
29 25 0.05
30 21 0.04
31 6 0.01
32 22 0.04
33 23 0.04
34 190 0.37
35 3 0.01
36 1 0.00
ACGTcount: A:0.22, C:0.34, G:0.13, T:0.31
Consensus pattern (27 bp):
CTTTTAAGCCCACAACTCCGTGGCACC
Found at i:389080 original size:95 final size:95
Alignment explanation
Indices: 388950--389172 Score: 338
Period size: 95 Copynumber: 2.3 Consensus size: 95
388940 TCTGTGGCAC
**
388950 CCTTTTAAGCCCACAACTTTGTGGCACTCTTTTTCCTTTTAAGTCCACAACTCCATGGCACCCTT
1 CCTTTTAAGCCCACAACTCCGTGGCACTCTTTTTCCTTTTAAGTCCACAACTCCATGGCACCCTT
*
389015 TTAAGCCCACAACTCCGTCGCACTCTTTTT
66 TTAAGCCCACAACTCCATCGCACTCTTTTT
* * * * *
389045 CCTTTTAAACCCACAACTCCATGGCATTCTTTTTCCTTTTAAGTCCATAACTCCGTGGCACCCTT
1 CCTTTTAAGCCCACAACTCCGTGGCACTCTTTTTCCTTTTAAGTCCACAACTCCATGGCACCCTT
* *
389110 TTAAGCCCACAACTCTATGGCACTCTTTTT
66 TTAAGCCCACAACTCCATCGCACTCTTTTT
* *
389140 CCTTTTAAGCCCATAACTCCGTGGCACCCTTTT
1 CCTTTTAAGCCCACAACTCCGTGGCACTCTTTT
389173 AAGCCCACAA
Statistics
Matches: 113, Mismatches: 15, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
95 113 1.00
ACGTcount: A:0.21, C:0.34, G:0.10, T:0.35
Consensus pattern (95 bp):
CCTTTTAAGCCCACAACTCCGTGGCACTCTTTTTCCTTTTAAGTCCACAACTCCATGGCACCCTT
TTAAGCCCACAACTCCATCGCACTCTTTTT
Found at i:389103 original size:156 final size:149
Alignment explanation
Indices: 388877--389440 Score: 659
Period size: 156 Copynumber: 3.7 Consensus size: 149
388867 AAAGTCCATG
* * *
388877 ACTCTGTGGCACTC-TTTTCTCTTTAAAGCCCATAACTCCATGGCA-CCTCTTTAAGTCCACAAC
1 ACTCCGTGGCACTCTTTTTC-CTTTTAAGCCCACAACTCCATGGCACCCT-TTTAAGTCCACAAC
* * *
388940 TCTGTGGCACCCTTTTAAGCCCACAACTTTGTGGCACTCTTTTTCCTTTTAAGTCCACAACTCCA
64 TCCGTGGCACCCTTTTAAGCCCACAACTCTGTGGCACTCTTTTTCCTTTTAAGTCCACAACTCCG
389005 TGGCACCCTTTTAAGCCCACA
129 TGGCACCCTTTTAAGCCCACA
* *
389026 ACTCCGTCGCACTCTTTTTCCTTTTAAACCCACAACTCCATGGCATTCTTTTTCCTTTTAAGTCC
1 ACTCCGTGGCACTCTTTTTCCTTTTAAGCCCACAACTCCATGGCA--C-----CCTTTTAAGTCC
* * * *
389091 ATAACTCCGTGGCACCCTTTTAAGCCCACAACTCTATGGCACTCTTTTTCCTTTTAAGCCCATAA
59 ACAACTCCGTGGCACCCTTTTAAGCCCACAACTCTGTGGCACTCTTTTTCCTTTTAAGTCCACAA
389156 CTCCGTGGCACCCTTTTAAGCCCACA
124 CTCCGTGGCACCCTTTTAAGCCCACA
* * *
389182 ACTCCGTGGCACTCTTTTTCCTTTTAAGCCCATAACTCCGTGGCACCCTTTTAAGCCCACAACTC
1 ACTCCGTGGCACTCTTTTTCCTTTTAAGCCCACAACTCCATGGCACCCTTTTAAGTCCACAACTC
* * *
389247 CGTGGCACTAGTTTTCCTTTTAAGCCCACAACTCCGTGGCATTTTTTTTCCTTTTAAGTCCACAA
66 CGTGGCAC-------CCTTTTAAGCCCACAACTCTGTGGCACTCTTTTTCCTTTTAAGTCCACAA
*
389312 CTCCGTGGCACCCTTTTAAGTCCACA
124 CTCCGTGGCACCCTTTTAAGCCCACA
* * *
389338 ACTCCGTGGCA-TCTTTCTCCTTTTAAGCCCACAAGT-CAGTGGCACCCTTTTCAAAAGCCCACA
1 ACTCCGTGGCACTCTTTTTCCTTTTAAGCCCACAACTCCA-TGGCACCCTTTT---AAGTCCACA
* * * * *
389401 AGTCGGTGGCACCCCTTTCAAAGCCCACAAGTCAGTGGCA
62 ACTCCGTGGCA-CCCTTT-TAAGCCCACAACTCTGTGGCA
389441 ACCTTTAAAA
Statistics
Matches: 359, Mismatches: 34, Indels: 40
0.83 0.08 0.09
Matches are distributed among these distances:
149 59 0.16
150 5 0.01
152 5 0.01
153 18 0.05
154 2 0.01
155 34 0.09
156 214 0.60
157 3 0.01
158 18 0.05
159 1 0.00
ACGTcount: A:0.22, C:0.34, G:0.13, T:0.31
Consensus pattern (149 bp):
ACTCCGTGGCACTCTTTTTCCTTTTAAGCCCACAACTCCATGGCACCCTTTTAAGTCCACAACTC
CGTGGCACCCTTTTAAGCCCACAACTCTGTGGCACTCTTTTTCCTTTTAAGTCCACAACTCCGTG
GCACCCTTTTAAGCCCACA
Found at i:389205 original size:95 final size:95
Alignment explanation
Indices: 389011--389328 Score: 304
Period size: 95 Copynumber: 3.3 Consensus size: 95
389001 TCCATGGCAC
* * *
389011 CCTTTTAAGCCCACAACTCCGTCGCACTCTTTTTCCTTTTAAACCCACAACTCCATGGCATTCTT
1 CCTTTTAAGCCCACAACTCCGTGGCACTCTTTTTCCTTTTAAGCCCACAACTCCGTGGCA--C--
* *
389076 TTTCCTTTTAAGTCCATAACTCCGTGGCA-C-----
62 --TCCTTTTAAGCCCACAACTCCGTGGCATCTTTTT
** *
389106 CCTTTTAAGCCCACAACTCTATGGCACTCTTTTTCCTTTTAAGCCCATAACTCCGTGGCAC-CCT
1 CCTTTTAAGCCCACAACTCCGTGGCACTCTTTTTCCTTTTAAGCCCACAACTCCGTGGCACTCCT
389170 TTTAAGCCCACAACTCCGTGGCACTCTTTTT
66 TTTAAGCCCACAACTCCGTGGCA-TCTTTTT
*
389201 CCTTTTAAGCCCATAACTCCGTGGCA--C-----CCTTTTAAGCCCACAACTCCGTGGCACTAGT
1 CCTTTTAAGCCCACAACTCCGTGGCACTCTTTTTCCTTTTAAGCCCACAACTCCGTGGCAC----
*
389259 TTTCCTTTTAAGCCCACAACTCCGTGGCATTTTTTTT
62 --TCCTTTTAAGCCCACAACTCCGTGGCA-TCTTTTT
* *
389296 CCTTTTAAGTCCACAACTCCGTGGCACCCTTTT
1 CCTTTTAAGCCCACAACTCCGTGGCACTCTTTT
389329 AAGTCCACAA
Statistics
Matches: 187, Mismatches: 16, Indels: 34
0.79 0.07 0.14
Matches are distributed among these distances:
88 50 0.27
90 1 0.01
93 2 0.01
95 133 0.71
97 1 0.01
ACGTcount: A:0.20, C:0.34, G:0.12, T:0.34
Consensus pattern (95 bp):
CCTTTTAAGCCCACAACTCCGTGGCACTCTTTTTCCTTTTAAGCCCACAACTCCGTGGCACTCCT
TTTAAGCCCACAACTCCGTGGCATCTTTTT
Found at i:389329 original size:95 final size:86
Alignment explanation
Indices: 389201--389440 Score: 237
Period size: 95 Copynumber: 2.6 Consensus size: 86
389191 CACTCTTTTT
*
389201 CCTTTTAAGCCCATAACTCCGTGGCACCCTTTTAAGCCCACAACTCCGTGGCACTAGTTTTCCTT
1 CCTTTTAAGCCCACAACTCCGTGGCACCCTTTTAAGCCCACAACTCCGTGGCACT--TTTTCCTT
*
389266 TTAAGCCCACAACTCCGTGGCATTTTTTTT
64 TTAAGCCCACAACTCCGTGGCA-------C
* * *
389296 CCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCATCTTTCTCCTTT
1 CCTTTTAAGCCCACAACTCCGTGGCACCCTTTTAAGCCCACAACTCCGTGGCA-CTTTTTCCTTT
* *
389361 TAAGCCCACAAGTCAGTGGCAC
65 TAAGCCCACAACTCCGTGGCAC
* * * * *
389383 CCTTTTCAAAAGCCCACAAGTCGGTGGCACCCCTTTCAAAGCCCACAAGTCAGTGGCA
1 CCTTTT---AAGCCCACAACTCCGTGGCA-CCCTTT-TAAGCCCACAACTCCGTGGCA
389441 ACCTTTAAAA
Statistics
Matches: 125, Mismatches: 14, Indels: 15
0.81 0.09 0.10
Matches are distributed among these distances:
87 6 0.05
90 17 0.14
91 6 0.05
92 17 0.14
94 27 0.22
95 50 0.40
96 2 0.02
ACGTcount: A:0.23, C:0.34, G:0.15, T:0.28
Consensus pattern (86 bp):
CCTTTTAAGCCCACAACTCCGTGGCACCCTTTTAAGCCCACAACTCCGTGGCACTTTTTCCTTTT
AAGCCCACAACTCCGTGGCAC
Found at i:389385 original size:60 final size:60
Alignment explanation
Indices: 389262--389446 Score: 200
Period size: 60 Copynumber: 3.1 Consensus size: 60
389252 CACTAGTTTT
* * * * *
389262 CCTTTTAAGCCCACAACTCCGTGGCATTTTTTTTCCTTTTAAGTCCACAACTCCGTGGCAC
1 CCTTTTAAGCCCACAACTCCGTGGCA-TCTTTCTCCTTTTAAGCCCACAAGTCAGTGGCAC
*
389323 CCTTTTAAGTCCACAACTCCGTGGCATCTTTCTCCTTTTAAGCCCACAAGTCAGTGGCAC
1 CCTTTTAAGCCCACAACTCCGTGGCATCTTTCTCCTTTTAAGCCCACAAGTCAGTGGCAC
* * * *
389383 CCTTTTCAAAAGCCCACAAGTCGGTGGCA-C---C-CCTTTCAAAGCCCACAAGTCAGTGGCAA
1 CCTTTT---AAGCCCACAACTCCGTGGCATCTTTCTCCTTT-TAAGCCCACAAGTCAGTGGCAC
389442 CCTTT
1 CCTTT
389447 AAAAGCACAT
Statistics
Matches: 109, Mismatches: 11, Indels: 10
0.84 0.08 0.08
Matches are distributed among these distances:
58 5 0.05
59 26 0.24
60 35 0.32
61 25 0.23
62 1 0.01
63 17 0.16
ACGTcount: A:0.23, C:0.34, G:0.15, T:0.29
Consensus pattern (60 bp):
CCTTTTAAGCCCACAACTCCGTGGCATCTTTCTCCTTTTAAGCCCACAAGTCAGTGGCAC
Found at i:389433 original size:29 final size:30
Alignment explanation
Indices: 389362--389452 Score: 134
Period size: 30 Copynumber: 3.1 Consensus size: 30
389352 TTCTCCTTTT
*
389362 AAGCCCACAAGTCAGTGGCACCCTTTTCAA
1 AAGCCCACAAGTCAGTGGCACCCCTTTCAA
*
389392 AAGCCCACAAGTCGGTGGCACCCCTTTC-A
1 AAGCCCACAAGTCAGTGGCACCCCTTTCAA
*
389421 AAGCCCACAAGTCAGTGGCA-ACCTTT-AA
1 AAGCCCACAAGTCAGTGGCACCCCTTTCAA
389449 AAGC
1 AAGC
389453 ACATAAATTG
Statistics
Matches: 56, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
28 10 0.18
29 20 0.36
30 26 0.46
ACGTcount: A:0.31, C:0.33, G:0.19, T:0.18
Consensus pattern (30 bp):
AAGCCCACAAGTCAGTGGCACCCCTTTCAA
Found at i:389615 original size:39 final size:39
Alignment explanation
Indices: 389561--389847 Score: 268
Period size: 39 Copynumber: 6.9 Consensus size: 39
389551 GTCTTTAAGA
* * *
389561 CCAATGTCGCTGGCCTTGAATAAGCACATTGGCACAAGC
1 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACAAGC
389600 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACAAGC
1 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACAAGC
*
389639 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGA
1 CCAATATCGCTGGCCTTGAATCAGCATATTGGCA------C---AAGC
* * * ** *
389687 CCAATGTCGCTGGCCTTGAATTAGCACATTGGCATGAGT
1 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACAAGC
*
389726 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTCTAAGA
1 CCAATATCGCTGGCCTTGAATCAGCATATTGGCA--------C-AAGC
* * **
389774 CCAATGTCGCTGGCCTTGAATCAGCACATTGGCGTAAGC
1 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACAAGC
*
389813 CCAATATCACTGGCCTTGAATCAGCATATTGGCAC
1 CCAATATCGCTGGCCTTGAATCAGCATATTGGCAC
389848 CTTGTCTTTA
Statistics
Matches: 204, Mismatches: 26, Indels: 36
0.77 0.10 0.14
Matches are distributed among these distances:
39 136 0.67
45 1 0.00
48 67 0.33
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (39 bp):
CCAATATCGCTGGCCTTGAATCAGCATATTGGCACAAGC
Found at i:389691 original size:87 final size:87
Alignment explanation
Indices: 389600--389931 Score: 504
Period size: 87 Copynumber: 3.8 Consensus size: 87
389590 TGGCACAAGC
* *
389600 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACAAGCCCAATATCGCTGGCCTTGAATCAGCA
1 CCAATGTCGCTGGCCTTGAATCAGCACATTGGCACAAGCCCAATATCGCTGGCCTTGAATCAGCA
389665 TATTGGCACCTTGTCTTTAAGA
66 TATTGGCACCTTGTCTTTAAGA
* ** *
389687 CCAATGTCGCTGGCCTTGAATTAGCACATTGGCATGAGTCCAATATCGCTGGCCTTGAATCAGCA
1 CCAATGTCGCTGGCCTTGAATCAGCACATTGGCACAAGCCCAATATCGCTGGCCTTGAATCAGCA
*
389752 TATTGGCACCTTGTCTCTAAGA
66 TATTGGCACCTTGTCTTTAAGA
** *
389774 CCAATGTCGCTGGCCTTGAATCAGCACATTGGCGTAAGCCCAATATCACTGGCCTTGAATCAGCA
1 CCAATGTCGCTGGCCTTGAATCAGCACATTGGCACAAGCCCAATATCGCTGGCCTTGAATCAGCA
389839 TATTGGCACCTTGTCTTTAAGA
66 TATTGGCACCTTGTCTTTAAGA
* * * * *
389861 CCAATGTCGCTGGCCTTGAATCAGAACATTGGC-CTAAACCCAATATCGTTGACCGTGAATCAGC
1 CCAATGTCGCTGGCCTTGAATCAGCACATTGGCAC-AAGCCCAATATCGCTGGCCTTGAATCAGC
*
389925 GTATTGG
65 ATATTGG
389932 TCCTTTTAGC
Statistics
Matches: 223, Mismatches: 21, Indels: 2
0.91 0.09 0.01
Matches are distributed among these distances:
87 223 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.27
Consensus pattern (87 bp):
CCAATGTCGCTGGCCTTGAATCAGCACATTGGCACAAGCCCAATATCGCTGGCCTTGAATCAGCA
TATTGGCACCTTGTCTTTAAGA
Found at i:389738 original size:126 final size:126
Alignment explanation
Indices: 389513--389760 Score: 460
Period size: 126 Copynumber: 2.0 Consensus size: 126
389503 TCTTCTAAGT
389513 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTCGCTGGCCTT
1 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTCGCTGGCCTT
389578 GAATAAGCACATTGGCACAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACAAGC
66 GAATAAGCACATTGGCACAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACAAGC
389639 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTCGCTGGCCTT
1 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTCGCTGGCCTT
* ** *
389704 GAATTAGCACATTGGCATGAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCAC
66 GAATAAGCACATTGGCACAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCAC
389761 CTTGTCTCTA
Statistics
Matches: 118, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
126 118 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.27
Consensus pattern (126 bp):
CCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTCGCTGGCCTT
GAATAAGCACATTGGCACAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACAAGC
Found at i:390684 original size:20 final size:20
Alignment explanation
Indices: 390659--390713 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 20
390649 CTGCCAAGGA
390659 AATGTATCGATACATT-ATTC
1 AATGTATCGATACATTGA-TC
390679 AATGTATCGATACATTGATC
1 AATGTATCGATACATTGATC
**
390699 TTTGTATCGATACAT
1 AATGTATCGATACAT
390714 CTGGGAATTT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
20 31 0.97
21 1 0.03
ACGTcount: A:0.33, C:0.15, G:0.13, T:0.40
Consensus pattern (20 bp):
AATGTATCGATACATTGATC
Found at i:398844 original size:47 final size:47
Alignment explanation
Indices: 398727--398844 Score: 155
Period size: 47 Copynumber: 2.5 Consensus size: 47
398717 AGTTACTGCT
* * * * * * *
398727 AGTTTCTCATGGAAACTGCTGCTACTATGGAAGCTTGAGTTGCTGTC
1 AGTTACTCGTGGAAGCTGCTGCTGCCATGGAAGCTGGAATTGCTGTC
*
398774 GGTTACTCGTGGAAGCTGCTGCTGCCATGGAAGCTGGAATTGCTGTC
1 AGTTACTCGTGGAAGCTGCTGCTGCCATGGAAGCTGGAATTGCTGTC
*
398821 AGTTGCTCGTGGAAGCTGCTGCTG
1 AGTTACTCGTGGAAGCTGCTGCTG
398845 GTGGATGTTG
Statistics
Matches: 61, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
47 61 1.00
ACGTcount: A:0.18, C:0.20, G:0.31, T:0.31
Consensus pattern (47 bp):
AGTTACTCGTGGAAGCTGCTGCTGCCATGGAAGCTGGAATTGCTGTC
Found at i:400670 original size:42 final size:42
Alignment explanation
Indices: 399986--400667 Score: 744
Period size: 42 Copynumber: 16.1 Consensus size: 42
399976 TAAATTAGGC
* * *
399986 AGTCTTCAAGGTCAAAGCCGACAGGCAGACTGAAGGATAGAAA
1 AGTCTCCAAGGTCAAAGCCGACAGGCAGACT-AAGGGTAGGAA
*
400029 AGTCTCCAAGGTCAAAGCCGACAGGCAGACTGAGGGATAGGAA
1 AGTCTCCAAGGTCAAAGCCGACAGGCAGACTAAGGG-TAGGAA
* * * *
400072 AGTCTCCAAGGTCAAAGCCGATAAGCAAACTTTAAGGATAGGAA
1 AGTCTCCAAGGTCAAAGCCGACAGGCAGAC--TAAGGGTAGGAA
400116 AGTCTCC-AGGATCAAAGCCGACAGGCAGACTAAGGGTAGGAA
1 AGTCTCCAAGG-TCAAAGCCGACAGGCAGACTAAGGGTAGGAA
*** * *
400158 AGTCTCC-AGAGTCAAAATTGACAGGCAAACTAAGGATAGGAA
1 AGTCTCCAAG-GTCAAAGCCGACAGGCAGACTAAGGGTAGGAA
* * * * *
400200 AGTCTCCAAGGTCAAAGCCGACAAGTAGACTGAGGGAAAGAA
1 AGTCTCCAAGGTCAAAGCCGACAGGCAGACTAAGGGTAGGAA
*
400242 AGTCTCCAAGGTCAAAGTCGACAGGCAGACTAAGGGTAGGAA
1 AGTCTCCAAGGTCAAAGCCGACAGGCAGACTAAGGGTAGGAA
* *
400284 AGTCTCCAAGGTCAAAGCCGATAGGCAGACTATGGGATAGGAA
1 AGTCTCCAAGGTCAAAGCCGACAGGCAGACTAAGGG-TAGGAA
* **
400327 AGTCTCC-AGGTCAAAGCCGACAGACAGACTAAGGGATAGGCT
1 AGTCTCCAAGGTCAAAGCCGACAGGCAGACTAAGGG-TAGGAA
* *
400369 AGTCTCCAAGGTCAAAGCCGACAAGCAGACTAAGGGTAGAAA
1 AGTCTCCAAGGTCAAAGCCGACAGGCAGACTAAGGGTAGGAA
* * * *
400411 AGTCTCCAAGGTCAAAGCCAATAGGCAAACTAAGGGTAGAAA
1 AGTCTCCAAGGTCAAAGCCGACAGGCAGACTAAGGGTAGGAA
* * * * * * * *
400453 AGTCT-CAAGGTTAAAGTCGACAGACTGACTGAGAGAAAGAA
1 AGTCTCCAAGGTCAAAGCCGACAGGCAGACTAAGGGTAGGAA
** * * * * *
400494 AGTCTTTAAAGTCAAAACCAACGGGCAGACTAAGTGATAGGAA
1 AGTCTCCAAGGTCAAAGCCGACAGGCAGACTAAG-GGTAGGAA
** * * *
400537 AGTCTTTAGGGTCAAAGCCG-TAGGCAGACTAAAGGTAGGAA
1 AGTCTCCAAGGTCAAAGCCGACAGGCAGACTAAGGGTAGGAA
* * *
400578 AGTCTCCAGGGTCAAAACCGACAGGCAGACTAAGGGTAGAAA
1 AGTCTCCAAGGTCAAAGCCGACAGGCAGACTAAGGGTAGGAA
* * *
400620 AGTCTCTAGGGTCAAAGCTGACAGGCAGACTAAGGGTAGGAA
1 AGTCTCCAAGGTCAAAGCCGACAGGCAGACTAAGGGTAGGAA
400662 AGTCTC
1 AGTCTC
400668 TAGAAGTTTA
Statistics
Matches: 533, Mismatches: 95, Indels: 23
0.82 0.15 0.04
Matches are distributed among these distances:
41 53 0.10
42 320 0.60
43 127 0.24
44 29 0.05
45 4 0.01
ACGTcount: A:0.38, C:0.19, G:0.28, T:0.15
Consensus pattern (42 bp):
AGTCTCCAAGGTCAAAGCCGACAGGCAGACTAAGGGTAGGAA
Found at i:410994 original size:19 final size:19
Alignment explanation
Indices: 410955--411038 Score: 108
Period size: 19 Copynumber: 4.7 Consensus size: 19
410945 TTTCAACGAT
410955 TTGTATCGATACATAAAGTG
1 TTGTATCGATACAT-AAGTG
410975 TTGTATCGATACATAAGTG
1 TTGTATCGATACATAAGTG
410994 TTGTATCGATAC--AA---
1 TTGTATCGATACATAAGTG
*
411008 -TGTATCGATACATAAGTT
1 TTGTATCGATACATAAGTG
411026 TTGTATCGATACA
1 TTGTATCGATACA
411039 ATATAAGCTA
Statistics
Matches: 58, Mismatches: 0, Indels: 13
0.82 0.00 0.18
Matches are distributed among these distances:
13 11 0.19
15 2 0.03
17 2 0.03
19 29 0.50
20 14 0.24
ACGTcount: A:0.33, C:0.12, G:0.18, T:0.37
Consensus pattern (19 bp):
TTGTATCGATACATAAGTG
Found at i:411013 original size:13 final size:13
Alignment explanation
Indices: 410995--411019 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
410985 ACATAAGTGT
410995 TGTATCGATACAA
1 TGTATCGATACAA
411008 TGTATCGATACA
1 TGTATCGATACA
411020 TAAGTTTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:411017 original size:32 final size:32
Alignment explanation
Indices: 410976--411040 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
410966 CATAAAGTGT
410976 TGTATCGATACATAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAGTGTTGTATCGATACAA
*
411008 TGTATCGATACATAAGTTTTGTATCGATACAA
1 TGTATCGATACATAAGTGTTGTATCGATACAA
411040 T
1 T
411041 ATAAGCTACT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.34, C:0.12, G:0.17, T:0.37
Consensus pattern (32 bp):
TGTATCGATACATAAGTGTTGTATCGATACAA
Found at i:411112 original size:52 final size:52
Alignment explanation
Indices: 411056--411188 Score: 230
Period size: 52 Copynumber: 2.6 Consensus size: 52
411046 CTACTGCCAA
* *
411056 AAAATGTATTGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTAT
1 AAAATGTATCGATACATGCAGGCAAATTTGCCCACATGTATCGATACACTAT
*
411108 AAAATGTATCGATACATGCAGGCAAATTTGCCCTCATGTATCGATACACTAT
1 AAAATGTATCGATACATGCAGGCAAATTTGCCCACATGTATCGATACACTAT
*
411160 TAAATGTATCGATACATGCAGGCAAATTT
1 AAAATGTATCGATACATGCAGGCAAATTT
411189 TCATATTTTG
Statistics
Matches: 77, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
52 77 1.00
ACGTcount: A:0.36, C:0.18, G:0.17, T:0.29
Consensus pattern (52 bp):
AAAATGTATCGATACATGCAGGCAAATTTGCCCACATGTATCGATACACTAT
Found at i:414875 original size:9 final size:9
Alignment explanation
Indices: 414857--414888 Score: 50
Period size: 8 Copynumber: 3.8 Consensus size: 9
414847 AGTAGAAATC
414857 AAAAAT-TA
1 AAAAATATA
414865 AAAAATATA
1 AAAAATATA
414874 AAAAATA-A
1 AAAAATATA
414882 AAAAATA
1 AAAAATA
414889 AAATTAATAG
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
8 14 0.61
9 9 0.39
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (9 bp):
AAAAATATA
Found at i:415597 original size:82 final size:82
Alignment explanation
Indices: 415460--415629 Score: 214
Period size: 82 Copynumber: 2.1 Consensus size: 82
415450 CAATTGAAAA
* * * * * **
415460 CTCCAGCAGCTTCAGGTAGTAGCAACATCCATCAATACCGGCAACAGCTCGAGCCTTTTCCGGCC
1 CTCCAGCAACTTCAGGCAGTAGCAACATCCATCAATACCGCCAACAGCTCAAGCCTCTTCCAACC
* * *
415525 CACGAACATGGTAGCAG
66 AACGAACACGGCAGCAG
* * *
415542 CTCCAGCAACTTCAGGCAGTAGCAGCATCCATCAATACTGCCAGCAGCTCAAGCCTCTTCCAACC
1 CTCCAGCAACTTCAGGCAGTAGCAACATCCATCAATACCGCCAACAGCTCAAGCCTCTTCCAACC
*
415607 AATGAACACGGCAGCAG
66 AACGAACACGGCAGCAG
415624 CTCCAG
1 CTCCAG
415630 TAGCATCCAT
Statistics
Matches: 74, Mismatches: 14, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
82 74 1.00
ACGTcount: A:0.28, C:0.35, G:0.20, T:0.17
Consensus pattern (82 bp):
CTCCAGCAACTTCAGGCAGTAGCAACATCCATCAATACCGCCAACAGCTCAAGCCTCTTCCAACC
AACGAACACGGCAGCAG
Found at i:429634 original size:28 final size:28
Alignment explanation
Indices: 429594--429650 Score: 105
Period size: 28 Copynumber: 2.0 Consensus size: 28
429584 TGGAGAAGTC
429594 TTCCCAAATCCAGTCAATGCAAATAGTG
1 TTCCCAAATCCAGTCAATGCAAATAGTG
*
429622 TTCCCAAATCCAGTCAATGCAGATAGTG
1 TTCCCAAATCCAGTCAATGCAAATAGTG
429650 T
1 T
429651 AAAAAAATAT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.33, C:0.25, G:0.16, T:0.26
Consensus pattern (28 bp):
TTCCCAAATCCAGTCAATGCAAATAGTG
Found at i:429658 original size:28 final size:28
Alignment explanation
Indices: 429599--429658 Score: 75
Period size: 28 Copynumber: 2.1 Consensus size: 28
429589 AAGTCTTCCC
****
429599 AAATCCAGTCAATGCAAATAGTGTTCCC
1 AAATCCAGTCAATGCAAATAGTGTAAAA
*
429627 AAATCCAGTCAATGCAGATAGTGTAAAA
1 AAATCCAGTCAATGCAAATAGTGTAAAA
429655 AAAT
1 AAAT
429659 ATATGCATAA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.43, C:0.18, G:0.15, T:0.23
Consensus pattern (28 bp):
AAATCCAGTCAATGCAAATAGTGTAAAA
Found at i:430800 original size:42 final size:42
Alignment explanation
Indices: 430740--430840 Score: 121
Period size: 42 Copynumber: 2.4 Consensus size: 42
430730 TGTCTATCGG
* * * * * **
430740 CTTTGACCCTAGAAACTGCCTCATCTAAAGTTTGCCTGTCAA
1 CTTTGACCTTGGAGACTGCCTCATCCAAAGTCTGCCAATCAA
* *
430782 CTTTGACCTTGGAGACTGCCTTATCCAAAGTCTGCCAATCGA
1 CTTTGACCTTGGAGACTGCCTCATCCAAAGTCTGCCAATCAA
430824 CTTTGACCTTGGAGACT
1 CTTTGACCTTGGAGACT
430841 TTCCTATCCC
Statistics
Matches: 50, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
42 50 1.00
ACGTcount: A:0.24, C:0.28, G:0.18, T:0.31
Consensus pattern (42 bp):
CTTTGACCTTGGAGACTGCCTCATCCAAAGTCTGCCAATCAA
Found at i:430849 original size:42 final size:43
Alignment explanation
Indices: 430767--434483 Score: 1353
Period size: 43 Copynumber: 87.5 Consensus size: 43
430757 GCCTCATCTA
* * * * *
430767 AAGTTTGCCTGTCAACTTTGACCTTGGAGAC-TGCCTTAT-CCA
1 AAGTCTGCCTGTCGACTTTGACCTTAGAGACTTTCC-TATCCCT
** *
430809 AAGTCTGCCAATCGACTTTGACCTTGGAGACTTTCCTATCCCT
1 AAGTCTGCCTGTCGACTTTGACCTTAGAGACTTTCCTATCCCT
* * * * * *
430852 AAGTCTGTCTGCCGGCCTTGACCTTGGCGACTTTCCTATCCCT
1 AAGTCTGCCTGTCGACTTTGACCTTAGAGACTTTCCTATCCCT
* * * *
430895 TAGTTTGCTTGTC-AGCTTTGACC-TAGAGA-TTGCCTCAT--CT
1 AAGTCTGCCTGTCGA-CTTTGACCTTAGAGACTTTCCT-ATCCCT
*
430935 AAAGTCTGCTTGTC-AGCTTTGA-CTCTAGAGACTTTCCTATCCCT
1 -AAGTCTGCCTGTCGA-CTTTGACCT-TAGAGACTTTCCTATCCCT
* * *
430979 AAGTGTG-CTAGTTCG-CTTTGACCCTGGAGACTTTCCTATCCCT
1 AAGTCTGCCT-G-TCGACTTTGACCTTAGAGACTTTCCTATCCCT
* * * * * *
431022 TAGTCTGCCTGTTGGCTTTGATGC-TGGAGAC-TGCCTCAT--CT
1 AAGTCTGCCTGTCGACTTTGA-CCTTAGAGACTTTCCT-ATCCCT
* * *
431063 AAAGTCTGCCTATCAACTTTGATCC-TAAAGACTTTCCTATCCCT
1 -AAGTCTGCCTGTCGACTTTGA-CCTTAGAGACTTTCCTATCCCT
* **
431107 AAGTCTACCTGTC-AGCTTTGACCCTTAGAGACTTTTTTATCCC-
1 AAGTCTGCCTGTCGA-CTTTGA-CCTTAGAGACTTTCCTATCCCT
* * * *
431150 ATAGTCTGCTTGTCGTCTTTGACCTTAAAGAC-TACCTCAT--CT
1 A-AGTCTGCCTGTCGACTTTGACCTTAGAGACTTTCCT-ATCCCT
* *
431192 AAAGTTTGCCTATCGACTTTGACCTTAGAGAC-TTCCTATCCCT
1 -AAGTCTGCCTGTCGACTTTGACCTTAGAGACTTTCCTATCCCT
* * **
431235 AAGTCTGCCTGTCAACTTTGACCCT-GTAGACTTTTTTAT-CCT
1 AAGTCTGCCTGTCGACTTTGACCTTAG-AGACTTTCCTATCCCT
* * * * * ***
431277 TATTCTGCCTGTC-AGCTTTGACC-TGGAGAC-TGCCTCTTTTT
1 AAGTCTGCCTGTCGA-CTTTGACCTTAGAGACTTTCCTATCCCT
* * * * *
431318 AAGTCTGCTTGTCCG-CTTTGA-CTCTGGAGA-ATACC--TCCTTTT
1 AAGTCTGCCTGT-CGACTTTGACCT-TAGAGACTTTCCTATCC--CT
* * *
431360 AAGTCTGTCTGTCGCCTTTGACCTTAGAGATTTTCCTATCCCT
1 AAGTCTGCCTGTCGACTTTGACCTTAGAGACTTTCCTATCCCT
* * * * * *
431403 TAGTATGCCTGTTGGCTTTCACC-TAGAGA-TTGCCTTAT--CT
1 AAGTCTGCCTGTCGACTTTGACCTTAGAGACTTTCC-TATCCCT
* * * * * * *
431443 AAAGTTTGCATGTTGGCTTTAACCCTAGAGACTTTCCAATCCCT
1 -AAGTCTGCCTGTCGACTTTGACCTTAGAGACTTTCCTATCCCT
* * * * *
431487 AAGTCTGCCTATTGGCTTTGACCTTGGAGACTTTTCTATCCCT
1 AAGTCTGCCTGTCGACTTTGACCTTAGAGACTTTCCTATCCCT
* * * *
431530 TAGTCTGCCTGTCTG-CTTTCACCTTGGAGA-TTGCCTCAT--CT
1 AAGTCTGCCTGTC-GACTTTGACCTTAGAGACTTTCCT-ATCCCT
* * * * * *
431571 AAAGTCTGCTTATCGGCTTTGGCCCTAGAAACTTTCCTATCCCT
1 -AAGTCTGCCTGTCGACTTTGACCTTAGAGACTTTCCTATCCCT
* *
431615 AAGTCTGCCTGTC-AGCTTTGACCCTT-TAGACTTTTCTAT-CCT
1 AAGTCTGCCTGTCGA-CTTTGA-CCTTAGAGACTTTCCTATCCCT
* * * * * *
431657 ATAGTCTGCTTGTCGGCTTTGACCCTAAAGAC-TGCC--TCCTTTT
1 A-AGTCTGCCTGTCGACTTTGACCTTAGAGACTTTCCTATCC--CT
* * * * * *
431700 AAGTCTGCTTGTCGGCTTTGAGCTTGGATAC-TGCC--TCCTCTT
1 AAGTCTGCCTGTCGACTTTGACCTTAGAGACTTTCCTATCC-C-T
* * *
431742 AAGTTTGCCTATCGGCTTTGACCTT-GAAGACTTTCCTATCCCT
1 AAGTCTGCCTGTCGACTTTGACCTTAG-AGACTTTCCTATCCCT
* * * * * *
431785 TAGTCTGCCTGTGGGCTTTGACCCTGGAGAC-TGCCTCAT--CT
1 AAGTCTGCCTGTCGACTTTGACCTTAGAGACTTTCCT-ATCCCT
* * * *
431826 AAAGTCTGCGTGTCAACTTTGACCCTAGAGAC-TGCCTCAT--CT
1 -AAGTCTGCCTGTCGACTTTGACCTTAGAGACTTTCCT-ATCCCT
* * *
431868 AAAGTCTGCCTATCGACTTTAACCTTGGAGACTTTCCTATCCCT
1 -AAGTCTGCCTGTCGACTTTGACCTTAGAGACTTTCCTATCCCT
* *
431912 AAGTCTGCCTGTCGGCTTTGACTTTAGAGACTCTT-CTATCCCT
1 AAGTCTGCCTGTCGACTTTGACCTTAGAGACT-TTCCTATCCCT
* * * * * *
431955 TAGTCTGCTTATC-AGCTTTGACCCTAGAGAC-TACC--TCCTTTT
1 AAGTCTGCCTGTCGA-CTTTGACCTTAGAGACTTTCCTATCC--CT
* * * * * *
431997 AAGCCTACCAGTTGGCTTTGACCCTAGAGACTTTCCTATCCCT
1 AAGTCTGCCTGTCGACTTTGACCTTAGAGACTTTCCTATCCCT
* * * *
432040 AAGTTTGCCTGTC-AGCCTTGACCCTGTA-A-ACTTTTCTA-CCCC
1 AAGTCTGCCTGTCGA-CTTTGA-CCT-TAGAGACTTTCCTATCCCT
* * * *
432082 ATAGTCTGCCTGTC-AGCTTTGACC-TGGATAC-TACC--TCCTTTT
1 A-AGTCTGCCTGTCGA-CTTTGACCTTAGAGACTTTCCTATCC--CT
* * * * * *
432124 AAGTCTACTTATCGGCTTTGAGCC-TAGGAGAC-TGCC--TCCTTTT
1 AAGTCTGCCTGTCGACTTTGA-CCTTA-GAGACTTTCCTATCC--CT
* * * * *
432167 AAGTCTGCCTATTGGCTTTGACCTTGGAGACTTTCCTATCTCT
1 AAGTCTGCCTGTCGACTTTGACCTTAGAGACTTTCCTATCCCT
* * * * *
432210 TAGTTTGCCTGTCGGCTTTGACC-TGGAGAC-TACCTCAT--CT
1 AAGTCTGCCTGTCGACTTTGACCTTAGAGACTTTCCT-ATCCCT
* * * *
432250 AAAGTCTGCTTGTCAACTTTGACCCTAGAGAC-TGCCTCAT--CT
1 -AAGTCTGCCTGTCGACTTTGACCTTAGAGACTTTCCT-ATCCCT
* * * *
432292 AAAGTTTGCCTATCGGCTTTAACCTTAGAGACTTTCCTATCCCT
1 -AAGTCTGCCTGTCGACTTTGACCTTAGAGACTTTCCTATCCCT
* * * *
432336 AAGTTTGCTTGTC-AGCTTTGACTTTAGAGACTTTTCTATCCCT
1 AAGTCTGCCTGTCGA-CTTTGACCTTAGAGACTTTCCTATCCCT
* * * * * * * * * **
432379 TAGCCTGCTTATCCG-CTTCGACCCTGGAGAC-TGCCTCT-TTT
1 AAGTCTGCCTGT-CGACTTTGACCTTAGAGACTTTCCTATCCCT
* * * * ** *
432420 AAGTCTGCCAGTTGGCTTTGGCCCAAAAGACTTTCCTATCCCT
1 AAGTCTGCCTGTCGACTTTGACCTTAGAGACTTTCCTATCCCT
* * * * * **
432463 TAGTTTGCCTGTCGGCTTTGACCCTAGAGAC-TACCTCAT-TTT
1 AAGTCTGCCTGTCGACTTTGACCTTAGAGACTTTCCT-ATCCCT
* * * * *
432505 AAGTTTGTCTGTCGACTTTGAACC-TCGATACTTTTCTATCCCT
1 AAGTCTGCCTGTCGACTTTG-ACCTTAGAGACTTTCCTATCCCT
* * * * * * **
432548 TAGTCTGCTTATCGGCTTTGA-CTCTAGAGAC-TACCACAT-TTT
1 AAGTCTGCCTGTCGACTTTGACCT-TAGAGACTTTCC-TATCCCT
* * *
432590 CAGTCTACCTGTCGACTTTGACCCTAGAGACTTTCCTATCCCT
1 AAGTCTGCCTGTCGACTTTGACCTTAGAGACTTTCCTATCCCT
* * * *
432633 TAGTCTGCCTGTTGGCTTTGACCTTAGAGAC-TGCCTCAT--CT
1 AAGTCTGCCTGTCGACTTTGACCTTAGAGACTTTCCT-ATCCCT
* * * *
432674 AAAATCTGCGTGTC-AGCTTTGACCCT-GAAGAC-TGCCTCAT--CT
1 -AAGTCTGCCTGTCGA-CTTTGACCTTAG-AGACTTTCCT-ATCCCT
* *
432716 AAAGTCTACCTGTCGACTTTGACCTTTGAGACTTTCCTATCCCT
1 -AAGTCTGCCTGTCGACTTTGACCTTAGAGACTTTCCTATCCCT
* * *
432760 AAGTCTGCCTGTCGGCTTTGACCTTGGATACTTTCCTATCCCT
1 AAGTCTGCCTGTCGACTTTGACCTTAGAGACTTTCCTATCCCT
* * * * *
432803 AAGTCT-TCTCGTCGGCTTTAACCATGGAGACTTTCCTATCCCT
1 AAGTCTGCCT-GTCGACTTTGACCTTAGAGACTTTCCTATCCCT
* * ** * * * *
432846 TAGTTTATCTATCGACTTTGACCTTGGAAAC-TGCCTCAT--CT
1 AAGTCTGCCTGTCGACTTTGACCTTAGAGACTTTCCT-ATCCCT
* * * * *
432887 AAAGTTTGCCTATTGACTTTAACCTT-GAAAACTTTCCTATCCCT
1 -AAGTCTGCCTGTCGACTTTGACCTTAG-AGACTTTCCTATCCCT
* *
432931 AAGTCTGCCTGTC-AGCTTTGACCTTGGTGACTTTCCTATCCCT
1 AAGTCTGCCTGTCGA-CTTTGACCTTAGAGACTTTCCTATCCCT
* * * *
432974 TAGTCTGCATGTCGGCTTTGACCCTAGAGAC-TTCCTCAT--CT
1 AAGTCTGCCTGTCGACTTTGACCTTAGAGACTTTCCT-ATCCCT
* * * *
433015 AAAATCTACCTATC-AGCTTTGACCTTGGAGACTTTCCTATCCCT
1 -AAGTCTGCCTGTCGA-CTTTGACCTTAGAGACTTTCCTATCCCT
** * * * *
433059 AAGTCTGCCTGTCGGTTTTAACCCTAAAGACTTTTCTATCCCT
1 AAGTCTGCCTGTCGACTTTGACCTTAGAGACTTTCCTATCCCT
** * * * * * *
433102 TTGTCTGCCTATCAGGCTTTGTCCTTCGCGAC-TACCTCAT--CT
1 AAGTCTGCCTGTC-GACTTTGACCTTAGAGACTTTCCT-ATCCCT
* * * *
433144 AAAGTCTACTTGTC-AGCTTTGACCCTAGGAGACTTTCTTATCCCT
1 -AAGTCTGCCTGTCGA-CTTTGACCTTA-GAGACTTTCCTATCCCT
* * * * * **
433189 TAGTCTGTCTATCGACTTTGACCTTAGAGAC-TACATTAT-TTT
1 AAGTCTGCCTGTCGACTTTGACCTTAGAGACTTTC-CTATCCCT
* * * * *
433231 AAGTCTACCTATCG-CTTTGACCTGA-AAAC-TGCCTCAT--CT
1 AAGTCTGCCTGTCGACTTTGACCTTAGAGACTTTCCT-ATCCCT
* * * * * *
433270 AAAGTCTACCTGTTGGCTTTGACCCTAGAGA-ATGCCTCAT--CT
1 -AAGTCTGCCTGTCGACTTTGACCTTAGAGACTTTCCT-ATCCCT
** * * *
433312 AAAGTCTATCTATCGACTTCGACCTTGGAGACTTTCCTATCCCT
1 -AAGTCTGCCTGTCGACTTTGACCTTAGAGACTTTCCTATCCCT
* * * * *
433356 AAGTCTACTTGTCGGCTTTGACATTGGAGACTTTCCTATCCCT
1 AAGTCTGCCTGTCGACTTTGACCTTAGAGACTTTCCTATCCCT
* * * * * *
433399 TAGTCTGCCTTTTGGCTTTGACCCTAGAGAC-TACCTCAT--CT
1 AAGTCTGCCTGTCGACTTTGACCTTAGAGACTTTCCT-ATCCCT
* * * * * *
433440 AAATTTTGCCTATTGGA-TTTGACCCTAGAGACTTTTCTATCCCT
1 -AAGTCTGCCT-GTCGACTTTGACCTTAGAGACTTTCCTATCCCT
* * * *
433484 AAGTCTACCTATCGACTTTGACCCTAGAGTCTTTCCTATCCCT
1 AAGTCTGCCTGTCGACTTTGACCTTAGAGACTTTCCTATCCCT
* * * * *
433527 TAGTCTGTCTGTCGGCTTTGACCCTAGAGAC-TACCTCAT--CT
1 AAGTCTGCCTGTCGACTTTGACCTTAGAGACTTTCCT-ATCCCT
* * * * * *
433568 AAAGTCTGCTTGTCGGCTCTGACCCTGGAAACTTTCCTATCCCT
1 -AAGTCTGCCTGTCGACTTTGACCTTAGAGACTTTCCTATCCCT
* *
433612 AAGTCTGCCTATC-AGCTTTGACCTTTGAGACTTTCCTA-CCACT
1 AAGTCTGCCTGTCGA-CTTTGACCTTAGAGACTTTCCTATCC-CT
* * *
433655 TAGTCTGCCTGTCGGACTTTGACCCTAGAGACTGT-CTCAT--CT
1 AAGTCTGCCTGTC-GACTTTGACCTTAGAGACTTTCCT-ATCCCT
* * *
433697 AAAGTCTGCCTGTCAACTTTGACCCT-GAAGACTTTCCTATCTCT
1 -AAGTCTGCCTGTCGACTTTGACCTTAG-AGACTTTCCTATCCCT
* * * * *
433741 AAGTCTACCTGTCGACCTTGACCATGGAGACTTTCTTATCCCT
1 AAGTCTGCCTGTCGACTTTGACCTTAGAGACTTTCCTATCCCT
* * * **
433784 TAGTCTGCCTGTC-AGCTTTGACCCTAGAGAC-TACCTCAT-TTT
1 AAGTCTGCCTGTCGA-CTTTGACCTTAGAGACTTTCCT-ATCCCT
* * *
433826 AAGTCTGCCTGTCGGCTTTGACCCTAGAGACTTTTCTATCCCT
1 AAGTCTGCCTGTCGACTTTGACCTTAGAGACTTTCCTATCCCT
* * * * * **
433869 TAGTTTGCTTGTCGACTTTGACCCTAGAGAC-TACCTCAT-TTT
1 AAGTCTGCCTGTCGACTTTGACCTTAGAGACTTTCCT-ATCCCT
* * *
433911 AAGTCTACATGTC-AGTTTTGA-CTCTAGAGACTTTCCTATCCCT
1 AAGTCTGCCTGTCGA-CTTTGACCT-TAGAGACTTTCCTATCCCT
* * * *
433954 TAGTCTACTTGTCGACTTTGACCTTAGAGAC-TACCTCAT--CT
1 AAGTCTGCCTGTCGACTTTGACCTTAGAGACTTTCCT-ATCCCT
* * * * * ** *
433995 AAAGTTTACCTGTCGGCTTTCACCTTGGAGACTTTCCCCTCCTT
1 -AAGTCTGCCTGTCGACTTTGACCTTAGAGACTTTCCTATCCCT
* ** * * *
434039 AAGTCTGCTTGTCGGTTTTGACCCTGGAGACATTCCTA-CCCTT
1 AAGTCTGCCTGTCGACTTTGACCTTAGAGACTTTCCTATCCC-T
* * * * * *
434082 TAGTCTGCTTGTC-AGCTTTAACCCTGGAGAC-TACC--TCCCT
1 AAGTCTGCCTGTCGA-CTTTGACCTTAGAGACTTTCCTATCCCT
* * *
434122 CAA-TCTGCCTATCGGCTTTGACTCGT-GAGACTTTCCT-TCCCT
1 -AAGTCTGCCTGTCGACTTTGAC-CTTAGAGACTTTCCTATCCCT
* * * * *
434164 CAGTTTGCATGTCGGCTTTGACCTT-GAAGAC-TGCCTCAT--CT
1 AAGTCTGCCTGTCGACTTTGACCTTAG-AGACTTTCCT-ATCCCT
* * **
434205 AAAGTCTACCTGTC-AGCTTTGACCCTAGAGACTTTCCCCTCCCT
1 -AAGTCTGCCTGTCGA-CTTTGACCTTAGAGACTTTCCTATCCCT
* * * * * * *
434249 AAGTATGCCTATCGGCTTTGACCCTAAAAACTTTCCTA-CTCTT
1 AAGTCTGCCTGTCGACTTTGACCTTAGAGACTTTCCTATC-CCT
* * * * *
434292 CAGTCTGCCTATC-AGCTTTGACCCTGGAGAC-TGCC--TCCCT
1 AAGTCTGCCTGTCGA-CTTTGACCTTAGAGACTTTCCTATCCCT
* * * * * * * * *
434332 CAGTTTGCCTATCGAATTTAACCCTGAAAAACTTT-CTTTCCCT
1 AAGTCTGCCTGTCGACTTTGA-CCTTAGAGACTTTCCTATCCCT
* * * * *
434375 CAGTCTAGCTTGTCGACTTTAACCCTAGTAGACTTTTCTA-CCCT
1 AAGTCT-GCCTGTCGACTTTGACCTTAG-AGACTTTCCTATCCCT
* * * * *
434419 TAGTCTGCCTATC-AGCTTTGACCCTAAAGACTTTCCTA-CTCT
1 AAGTCTGCCTGTCGA-CTTTGACCTTAGAGACTTTCCTATCCCT
* * *
434461 CAGTGTGCCTGTCGGCTTTGACC
1 AAGTCTGCCTGTCGACTTTGACC
434484 CTAAACACTA
Statistics
Matches: 2792, Mismatches: 638, Indels: 490
0.71 0.16 0.12
Matches are distributed among these distances:
39 2 0.00
40 77 0.03
41 209 0.07
42 979 0.35
43 1342 0.48
44 164 0.06
45 19 0.01
ACGTcount: A:0.19, C:0.28, G:0.17, T:0.36
Consensus pattern (43 bp):
AAGTCTGCCTGTCGACTTTGACCTTAGAGACTTTCCTATCCCT
Found at i:430955 original size:127 final size:127
Alignment explanation
Indices: 430772--434195 Score: 1237
Period size: 128 Copynumber: 26.9 Consensus size: 127
430762 ATCTAAAGTT
** * * *** *
430772 TGCCTGTCAACTTTGACCTTGGAGACTGCCTTATCCAAAGTCTGCCAATC-GACTTTGACCTTGG
1 TGCCTGTCGGCTTTGACC-TGGAGACTGCCTCATCTAAAGTCTGCTTGTCAG-CTTTGACCTTAG
* * * * *
430836 AGACTTTCCTATCCCTAAGTCTGTCTGCCGGCCTTGACCTTGGCGACTTTCCTATCCCTTAGTT
64 AGACTTTCCTATCCCTAAGTCTGCCTGTCGGCTTTGACCTTGGAGACTTTCCTATCCCTTAGTC
* * * *
430900 TGCTTGTCAGCTTTGACCTAGAGATTGCCTCATCTAAAGTCTGCTTGTCAGCTTTGA-CTCTAGA
1 TGCCTGTCGGCTTTGACCTGGAGACTGCCTCATCTAAAGTCTGCTTGTCAGCTTTGACCT-TAGA
* *
430964 GACTTTCCTATCCCTAAGTGTG-CTAGTTC-GCTTTGACCCTGGAGACTTTCCTATCCCTTAGTC
65 GACTTTCCTATCCCTAAGTCTGCCT-G-TCGGCTTTGACCTTGGAGACTTTCCTATCCCTTAGTC
* * * * * *
431027 TGCCTGTTGGCTTTGATGCTGGAGACTGCCTCATCTAAAGTCTGCCTATCAACTTTGATCC-TAA
1 TGCCTGTCGGCTTTGA-CCTGGAGACTGCCTCATCTAAAGTCTGCTTGTCAGCTTTGA-CCTTAG
* * * ** *
431091 AGACTTTCCTATCCCTAAGTCTACCTGTCAGCTTTGACCCTTAGAGACTTTTTTATCCCATAGTC
64 AGACTTTCCTATCCCTAAGTCTGCCTGTCGGCTTTGA-CCTTGGAGACTTTCCTATCCCTTAGTC
* * ** * * * *
431156 TGCTTGTCGTCTTTGACCTTAAAGACTACCTCATCTAAAGTTTGCCTATC-GACTTTGACCTTAG
1 TGCCTGTCGGCTTTGACC-TGGAGACTGCCTCATCTAAAGTCTGCTTGTCAG-CTTTGACCTTAG
** * * ** *
431220 AGAC-TTCCTATCCCTAAGTCTGCCTGTCAACTTTGACCCTGTAGACTTTTTTAT-CCTTATTC
64 AGACTTTCCTATCCCTAAGTCTGCCTGTCGGCTTTGACCTTGGAGACTTTCCTATCCCTTAGTC
* * * * * *
431282 TGCCTGTCAGCTTTGACCTGGAGACTGCCTCTTTTTAAGTCTGCTTGTCCGCTTTGA-CTCTGGA
1 TGCCTGTCGGCTTTGACCTGGAGACTGCCTCATCTAAAGTCTGCTTGTCAGCTTTGACCT-TAGA
* * * * * * * *
431346 GA-ATACC--TCCTTTTAAGTCTGTCTGTCGCCTTTGACCTTAGAGATTTTCCTATCCCTTAGTA
65 GACTTTCCTATCC--CTAAGTCTGCCTGTCGGCTTTGACCTTGGAGACTTTCCTATCCCTTAGTC
* * * * * * * ** * *
431408 TGCCTGTTGGCTTTCACCTAGAGATTGCCTTATCTAAAGTTTGCATGTTGGCTTTAACCCTAGAG
1 TGCCTGTCGGCTTTGACCTGGAGACTGCCTCATCTAAAGTCTGCTTGTCAGCTTTGACCTTAGAG
* * * *
431473 ACTTTCCAATCCCTAAGTCTGCCTATTGGCTTTGACCTTGGAGACTTTTCTATCCCTTAGTC
66 ACTTTCCTATCCCTAAGTCTGCCTGTCGGCTTTGACCTTGGAGACTTTCCTATCCCTTAGTC
* * * * * * *
431535 TGCCTGTCTGCTTTCACCTTGGAGATTGCCTCATCTAAAGTCTGCTTATCGGCTTTGGCCCTAGA
1 TGCCTGTCGGCTTTGACC-TGGAGACTGCCTCATCTAAAGTCTGCTTGTCAGCTTTGACCTTAGA
* * * *
431600 AACTTTCCTATCCCTAAGTCTGCCTGTCAGCTTTGACCCTT-TAGACTTTTCTAT-CCTATAGTC
65 GACTTTCCTATCCCTAAGTCTGCCTGTCGGCTTTGA-CCTTGGAGACTTTCCTATCCCT-TAGTC
* ** * * * * * *
431663 TGCTTGTCGGCTTTGACCCTAAAGACTGCCTCCTTTTAAGTCTGCTTGTCGGCTTTGAGCTTGGA
1 TGCCTGTCGGCTTTGA-CCTGGAGACTGCCTCATCTAAAGTCTGCTTGTCAGCTTTGACCTTAGA
* * * * *
431728 TAC-TGCC--TCCTCTTAAGTTTGCCTATCGGCTTTGACCTTGAAGACTTTCCTATCCCTTAGTC
65 GACTTTCCTATCC-C-TAAGTCTGCCTGTCGGCTTTGACCTTGGAGACTTTCCTATCCCTTAGTC
* * * *
431790 TGCCTGTGGGCTTTGACCCTGGAGACTGCCTCATCTAAAGTCTGCGTGTCAACTTTGACCCTAGA
1 TGCCTGTCGGCTTTGA-CCTGGAGACTGCCTCATCTAAAGTCTGCTTGTCAGCTTTGACCTTAGA
* * * * *
431855 GAC-TGCCTCAT--CTAAAGTCTGCCTATCGACTTTAACCTTGGAGACTTTCCTATCCCTAAGTC
65 GACTTTCCT-ATCCCT-AAGTCTGCCTGTCGGCTTTGACCTTGGAGACTTTCCTATCCCTTAGTC
* * * * * *
431917 TGCCTGTCGGCTTTGACTTTAGAGACT-CTTCTATCCCT-TAGTCTGCTTATCAGCTTTGACCCT
1 TGCCTGTCGGCTTTGAC-CTGGAGACTGCCTC-AT--CTAAAGTCTGCTTGTCAGCTTTGACCTT
* * * * * * * * *
431980 AGAGAC-TACC--TCCTTTTAAGCCTACCAGTTGGCTTTGACCCTAGAGACTTTCCTATCCCTAA
62 AGAGACTTTCCTATCC--CTAAGTCTGCCTGTCGGCTTTGACCTTGGAGACTTTCCTATCCCTTA
*
432042 GTT
125 GTC
* * * * ** * * * * *
432045 TGCCTGTCAGCCTTGACCCTGTAAACT-TTTCTACCCCATAGTCTGCCTGTCAGCTTTGACC-TG
1 TGCCTGTCGGCTTTGA-CCTGGAGACTGCCTC-A-TCTAAAGTCTGCTTGTCAGCTTTGACCTTA
* * * * * * * * *
432108 GATAC-TACC--TCCTTTTAAGTCTACTTATCGGCTTTGAGCCTAGGAGAC-TGCC--TCCTTTT
63 GAGACTTTCCTATCC--CTAAGTCTGCCTGTCGGCTTTGA-CCTTGGAGACTTTCCTATCC-CTT
432167 AAGTC
124 -AGTC
* * * ** * * * *
432172 TGCCTATTGGCTTTGACCTTGGAGACTTTCCT-ATCTCTTAGTTTGCCTGTCGGCTTTGACC-TG
1 TGCCTGTCGGCTTTGACC-TGGAGAC-TGCCTCATCT-AAAGTCTGCTTGTCAGCTTTGACCTTA
* * ** * * * *
432235 GAGAC-TACCTCAT--CTAAAGTCTGCTTGTCAACTTTGACCCTAGAGAC-TGCCTCAT--CTAA
63 GAGACTTTCCT-ATCCCT-AAGTCTGCCTGTCGGCTTTGACCTTGGAGACTTTCCT-ATCCCT-T
*
432294 AGTT
124 AGTC
* * * * * *
432298 TGCCTATCGGCTTTAACCTTAGAGACTTTCCT-ATCCCT-AAGTTTGCTTGTCAGCTTTGACTTT
1 TGCCTGTCGGCTTTGACC-TGGAGAC-TGCCTCAT--CTAAAGTCTGCTTGTCAGCTTTGACCTT
* * * * * * * * * **
432361 AGAGACTTTTCTATCCCTTAGCCTGCTTATCCGCTTCGACCCTGGAGAC-TGCC--TCTTTTAAG
62 AGAGACTTTCCTATCCCTAAGTCTGCCTGTCGGCTTTGACCTTGGAGACTTTCCTATCCCTT-AG
432423 TC
126 TC
* * * *** * * * * * *
432425 TGCCAGTTGGCTTTGGCCCAAAAGACTTTCCT-ATCCCT-TAGTTTGCCTGTCGGCTTTGACCCT
1 TGCCTGTCGGCTTT-GACCTGGAGAC-TGCCTCAT--CTAAAGTCTGCTTGTCAGCTTTGACCTT
* ** * * * * * *
432488 AGAGAC-TACCTCAT-TTTAAGTTTGTCTGTCGACTTTGAACC-TCGATACTTTTCTATCCCTTA
62 AGAGACTTTCCT-ATCCCTAAGTCTGCCTGTCGGCTTTG-ACCTTGGAGACTTTCCTATCCCTTA
432550 GTC
125 GTC
* * * * * * ** * * *
432553 TGCTTATCGGCTTTGACTCTAGAGACTACCACATTTTCAGTCTACCTGTC-GACTTTGACCCTAG
1 TGCCTGTCGGCTTTGAC-CTGGAGACTGCCTCATCTAAAGTCTGCTTGTCAG-CTTTGACCTTAG
* * * * * *
432617 AGACTTTCCTATCCCTTAGTCTGCCTGTTGGCTTTGACCTTAGAGAC-TGCCTCAT--CTAAAAT
64 AGACTTTCCTATCCCTAAGTCTGCCTGTCGGCTTTGACCTTGGAGACTTTCCT-ATCCCT-TAGT
432679 C
127 C
* * * * * *
432680 TGCGTGTCAGCTTTGACCCTGAAGACTGCCTCATCTAAAGTCTACCTGTC-GACTTTGACCTTTG
1 TGCCTGTCGGCTTTGA-CCTGGAGACTGCCTCATCTAAAGTCTGCTTGTCAG-CTTTGACCTTAG
* *
432744 AGACTTTCCTATCCCTAAGTCTGCCTGTCGGCTTTGACCTTGGATACTTTCCTATCCCTAAGTC
64 AGACTTTCCTATCCCTAAGTCTGCCTGTCGGCTTTGACCTTGGAGACTTTCCTATCCCTTAGTC
* * * * ** *
432808 T-TCTCGTCGGCTTTAACCATGGAGACTTTCCT-ATCCCT-TAGT-TTATCTATC-GACTTTGAC
1 TGCCT-GTCGGCTTTGACC-TGGAGAC-TGCCTCAT--CTAAAGTCTGCT-TGTCAG-CTTTGAC
* * * * * * * * * *
432868 CTTGGAAAC-TGCCTCAT--CTAAAGTTTGCCTATTGACTTTAACCTTGAAAACTTTCCTATCCC
59 CTTAGAGACTTTCCT-ATCCCT-AAGTCTGCCTGTCGGCTTTGACCTTGGAGACTTTCCTATCCC
*
432930 TAAGTC
122 TTAGTC
* * * * * * *
432936 TGCCTGTCAGCTTTGACCTTGGTGACTTTCCT-ATCCCT-TAGTCTGCATGTCGGCTTTGACCCT
1 TGCCTGTCGGCTTTGACC-TGGAGAC-TGCCTCAT--CTAAAGTCTGCTTGTCAGCTTTGACCTT
* * * * *
432999 AGAGAC-TTCCTCAT--CTAAAATCTACCTATCAGCTTTGACCTTGGAGACTTTCCTATCCCTAA
62 AGAGACTTTCCT-ATCCCT-AAGTCTGCCTGTCGGCTTTGACCTTGGAGACTTTCCTATCCCTTA
433061 GTC
125 GTC
* * ** ** ** * * *
433064 TGCCTGTCGGTTTTAACCCTAAAGACT-TTTCTATCCCT-TTGTCTGCCTATCAGGCTTTGTCCT
1 TGCCTGTCGGCTTTGA-CCTGGAGACTGCCTC-AT--CTAAAGTCTGCTTGTCA-GCTTTGACCT
* * * * * * * *
433127 TCGCGAC-TACCTCAT--CTAAAGTCTACTTGTCAGCTTTGACCCTAGGAGACTTTCTTATCCCT
61 TAGAGACTTTCCT-ATCCCT-AAGTCTGCCTGTCGGCTTTGA-CCTTGGAGACTTTCCTATCCCT
433189 TAGTC
123 TAGTC
* * * * * * * * * * * * *
433194 TGTCTATCGACTTTGACCTTAGAGACTACATTATTTTAAGTCTACCTATC-GCTTTGACCTGA-A
1 TGCCTGTCGGCTTTGACC-TGGAGACTGCCTCATCTAAAGTCTGCTTGTCAGCTTTGACCTTAGA
* * * * * * * * *
433257 AAC-TGCCTCAT--CTAAAGTCTACCTGTTGGCTTTGACCCTAGAGA-ATGCCTCAT--CTAAAG
65 GACTTTCCT-ATCCCT-AAGTCTGCCTGTCGGCTTTGACCTTGGAGACTTTCCT-ATCCCT-TAG
433316 TC
126 TC
** * * * * * * *
433318 TATCTATCGACTTCGACCTTGGAGACTTTCCT-ATCCCT-AAGTCTACTTGTCGGCTTTGACATT
1 TGCCTGTCGGCTTTGACC-TGGAGAC-TGCCTCAT--CTAAAGTCTGCTTGTCAGCTTTGACCTT
* * * * * * * *
433381 GGAGACTTTCCTATCCCTTAGTCTGCCTTTTGGCTTTGACCCTAGAGAC-TACCTCAT--CTAAA
62 AGAGACTTTCCTATCCCTAAGTCTGCCTGTCGGCTTTGACCTTGGAGACTTTCCT-ATCCCT-TA
* *
433443 TTT
125 GTC
* * * * ** * * * *
433446 TGCCTATTGGATTTGACCCTAGAGACT-TTTCTATCCCT-AAGTCTACCTATC-GACTTTGACCC
1 TGCCTGTCGGCTTTGA-CCTGGAGACTGCCTC-AT--CTAAAGTCTGCTTGTCAG-CTTTGACCT
* * * * * * *
433508 TAGAGTCTTTCCTATCCCTTAGTCTGTCTGTCGGCTTTGACCCTAGAGAC-TACCTCAT--CTAA
61 TAGAGACTTTCCTATCCCTAAGTCTGCCTGTCGGCTTTGACCTTGGAGACTTTCCT-ATCCCT-T
433570 AGTC
124 AGTC
* * * * * *
433574 TGCTTGTCGGCTCTGACCCTGGAAACTTTCCT-ATCCCT-AAGTCTGCCTATCAGCTTTGACCTT
1 TGCCTGTCGGCTTTGA-CCTGGAGAC-TGCCTCAT--CTAAAGTCTGCTTGTCAGCTTTGACCTT
* * * * *
433637 TGAGACTTTCCTA-CCACTTAGTCTGCCTGTCGGACTTTGACCCTAGAGACTGT-CTCAT--CTA
62 AGAGACTTTCCTATCC-CTAAGTCTGCCTGTCGG-CTTTGACCTTGGAGACTTTCCT-ATCCCT-
*
433698 AAGTC
123 TAGTC
** * * * * * * *
433703 TGCCTGTCAACTTTGACCCTGAAGACTTTCCT-ATCTCTAAGTCTACCTGTC-GACCTTGACCAT
1 TGCCTGTCGGCTTTGA-CCTGGAGAC-TGCCTCATCT-AAAGTCTGCTTGTCAG-CTTTGACCTT
* * * * * * * *
433766 GGAGACTTTCTTATCCCTTAGTCTGCCTGTCAGCTTTGACCCTAGAGAC-TACCTCAT--TTTAA
62 AGAGACTTTCCTATCCCTAAGTCTGCCTGTCGGCTTTGACCTTGGAGACTTTCCT-ATCCCTT-A
433828 GTC
125 GTC
* ** * * *
433831 TGCCTGTCGGCTTTGACCCTAGAGACT-TTTCTATCCCT-TAGTTTGCTTGTC-GACTTTGACCC
1 TGCCTGTCGGCTTTGA-CCTGGAGACTGCCTC-AT--CTAAAGTCTGCTTGTCAG-CTTTGACCT
* ** * * * * *
433893 TAGAGAC-TACCTCAT-TTTAAGTCTACATGTCAGTTTTGA-CTCTAGAGACTTTCCTATCCCTT
61 TAGAGACTTTCCT-ATCCCTAAGTCTGCCTGTCGGCTTTGACCT-TGGAGACTTTCCTATCCCTT
433955 AGTC
124 AGTC
* * * * * * * * * * *
433959 TACTTGTCGACTTTGACCTTAGAGACTACCTCATCTAAAGTTTACCTGTCGGCTTTCACCTTGGA
1 TGCCTGTCGGCTTTGACC-TGGAGACTGCCTCATCTAAAGTCTGCTTGTCAGCTTTGACCTTAGA
** * * * * *
434024 GACTTTCCCCTCCTTAAGTCTGCTTGTCGGTTTTGACCCTGGAGACATTCCTA-CCCTTTAGTC
65 GACTTTCCTATCCCTAAGTCTGCCTGTCGGCTTTGACCTTGGAGACTTTCCTATCCC-TTAGTC
* * * * * * * * * *
434087 TGCTTGTCAGCTTTAACCCTGGAGACTACCTC-CCTCAA-TCTGCCTATCGGCTTTGACTCGT-G
1 TGCCTGTCGGCTTTGA-CCTGGAGACTGCCTCATCTAAAGTCTGCTTGTCAGCTTTGAC-CTTAG
* * * *
434149 AGACTTTCCT-TCCCTCAGTTTGCATGTCGGCTTTGACCTTGAAGACT
64 AGACTTTCCTATCCCTAAGTCTGCCTGTCGGCTTTGACCTTGGAGACT
434196 GCCTCATCTA
Statistics
Matches: 2584, Mismatches: 558, Indels: 311
0.75 0.16 0.09
Matches are distributed among these distances:
123 5 0.00
124 34 0.01
125 126 0.05
126 255 0.10
127 750 0.29
128 1057 0.41
129 302 0.12
130 54 0.02
131 1 0.00
ACGTcount: A:0.19, C:0.28, G:0.17, T:0.36
Consensus pattern (127 bp):
TGCCTGTCGGCTTTGACCTGGAGACTGCCTCATCTAAAGTCTGCTTGTCAGCTTTGACCTTAGAG
ACTTTCCTATCCCTAAGTCTGCCTGTCGGCTTTGACCTTGGAGACTTTCCTATCCCTTAGTC
Found at i:431633 original size:85 final size:85
Alignment explanation
Indices: 430728--434271 Score: 1058
Period size: 85 Copynumber: 41.7 Consensus size: 85
430718 ATGCCCTCAA
* * * * *
430728 TCTGTCTATCGGCTTTGACCCTAGAAAC-TGCCTCAT--CTAAAGTTTGCCTGTCAACTTTGACC
1 TCTGCCTATCGGCTTTGACCCTAGAGACTTTCCT-ATCCCT-AAGTCTGCCTGTCAGCTTTGACC
* *
430790 TTGGAGACTGCCTTATCCAAAG
64 TTGGAGACTGCCTCATCTAAAG
* * * * * * * *
430812 TCTGCCAATCGACTTTGACCTTGGAGACTTTCCTATCCCTAAGTCTGTCTGCCGGCCTTGACCTT
1 TCTGCCTATCGGCTTTGACCCTAGAGACTTTCCTATCCCTAAGTCTGCCTGTCAGCTTTGACCTT
* * *
430877 GGCGACTTTCCT-ATCCCT-TAG
66 GGAGAC-TGCCTCAT--CTAAAG
* * * * * *
430898 TTTGCTTGTCAGCTTTGA-CCTAGAGA-TTGCCTCAT--CTAAAGTCTGCTTGTCAGCTTTGA-C
1 TCTGCCTATCGGCTTTGACCCTAGAGACTTTCCT-ATCCCT-AAGTCTGCCTGTCAGCTTTGACC
* *
430958 TCTAGAGACTTTCCT-ATCCCT-AAG
64 T-TGGAGAC-TGCCTCAT--CTAAAG
* * * ** *
430982 TGTG-CTAGTTC-GCTTTGACCCTGGAGACTTTCCTATCCCTTAGTCTGCCTGTTGGCTTTGATG
1 TCTGCCTA--TCGGCTTTGACCCTAGAGACTTTCCTATCCCTAAGTCTGCCTGTCAGCTTTGA-C
431045 C-TGGAGACTGCCTCATCTAAAG
63 CTTGGAGACTGCCTCATCTAAAG
** * * *
431067 TCTGCCTATCAACTTTGATCCTAAAGACTTTCCTATCCCTAAGTCTACCTGTCAGCTTTGACCCT
1 TCTGCCTATCGGCTTTGACCCTAGAGACTTTCCTATCCCTAAGTCTGCCTGTCAGCTTTGA-CCT
* *** * * *
431132 TAGAGACTTTTTTATCCCATAG
65 TGGAGACTGCCTCAT-CTAAAG
* * * * * * * *
431154 TCTGCTTGTCGTCTTTGACCTTAAAGAC-TACCTCAT--CTAAAGTTTGCCTATC-GACTTTGAC
1 TCTGCCTATCGGCTTTGACCCTAGAGACTTTCCT-ATCCCT-AAGTCTGCCTGTCAG-CTTTGAC
* *
431215 CTTAGAGACTTCCT-ATCCCT-AAG
63 CTTGGAGACTGCCTCAT--CTAAAG
* ** ** * *
431238 TCTGCCTGTCAACTTTGACCCT-GTAGACTTTTTTAT-CCTTATTCTGCCTGTCAGCTTTGACC-
1 TCTGCCTATCGGCTTTGACCCTAG-AGACTTTCCTATCCCTAAGTCTGCCTGTCAGCTTTGACCT
* * *
431300 TGGAGACTGCCTCTTTTTAAG
65 TGGAGACTGCCTCATCTAAAG
* * * * * * * * *
431321 TCTGCTTGTCCGCTTTGACTCTGGAGA-ATACC--TCCTTTTAAGTCTGTCTGTC-GCCTTTGAC
1 TCTGCCTATCGGCTTTGACCCTAGAGACTTTCCTATCC--CTAAGTCTGCCTGTCAG-CTTTGAC
* * * *
431382 CTTAGAGATTTTCCT-ATCCCT-TAG
63 CTTGGAGA-CTGCCTCAT--CTAAAG
* * * * * * * ** *
431406 TATGCCTGTTGGCTTTCA-CCTAGAGA-TTGCCTTAT--CTAAAGTTTGCATGTTGGCTTTAACC
1 TCTGCCTATCGGCTTTGACCCTAGAGACTTTCC-TATCCCT-AAGTCTGCCTGTCAGCTTTGACC
* * * *
431467 CTAGAGACTTTCCAATC-CCT-AAG
64 TTGGAGAC-TGCC--TCATCTAAAG
* * * * * * *
431490 TCTGCCTATTGGCTTTGACCTTGGAGACTTTTCTATCCCTTAGTCTGCCTGTCTGCTTTCACCTT
1 TCTGCCTATCGGCTTTGACCCTAGAGACTTTCCTATCCCTAAGTCTGCCTGTCAGCTTTGACCTT
*
431555 GGAGATTGCCTCATCTAAAG
66 GGAGACTGCCTCATCTAAAG
* * *
431575 TCTGCTTATCGGCTTTGGCCCTAGAAACTTTCCTATCCCTAAGTCTGCCTGTCAGCTTTGACCCT
1 TCTGCCTATCGGCTTTGACCCTAGAGACTTTCCTATCCCTAAGTCTGCCTGTCAGCTTTGA-CCT
* ** *
431640 T-TAGACT-TTTCTATCCTATAG
65 TGGAGACTGCCTC-AT-CTAAAG
* * * * * * * *
431661 TCTGCTTGTCGGCTTTGACCCTAAAGAC-TGCC--TCCTTTTAAGTCTGCTTGTCGGCTTTGAGC
1 TCTGCCTATCGGCTTTGACCCTAGAGACTTTCCTATCC--CTAAGTCTGCCTGTCAGCTTTGACC
* * *
431723 TTGGATACTGCCTCCTCTTAAG
64 TTGGAGACTGCCTCATCTAAAG
* * * ** *
431745 TTTGCCTATCGGCTTTGA-CCTTGAAGACTTTCCTATCCCTTAGTCTGCCTGTGGGCTTTGACCC
1 TCTGCCTATCGGCTTTGACCCTAG-AGACTTTCCTATCCCTAAGTCTGCCTGTCAGCTTTGACCT
431809 TGGAGACTGCCTCATCTAAAG
65 TGGAGACTGCCTCATCTAAAG
* * ** * * *
431830 TCTGCGTGTCAACTTTGACCCTAGAGAC-TGCCTCAT--CTAAAGTCTGCCTATC-GACTTTAAC
1 TCTGCCTATCGGCTTTGACCCTAGAGACTTTCCT-ATCCCT-AAGTCTGCCTGTCAG-CTTTGAC
*
431891 CTTGGAGACTTTCCT-ATCCCT-AAG
63 CTTGGAGAC-TGCCTCAT--CTAAAG
* ** * * * *
431915 TCTGCCTGTCGGCTTTGACTTTAGAGACTCTT-CTATCCCTTAGTCTGCTTATCAGCTTTGACCC
1 TCTGCCTATCGGCTTTGACCCTAGAGACT-TTCCTATCCCTAAGTCTGCCTGTCAGCTTTGACCT
* * * * *
431979 TAGAGACTACCTCCTTTTAAG
65 TGGAGACTGCCTCATCTAAAG
* * * * * *
432000 CCTACC-AGTTGGCTTTGACCCTAGAGACTTTCCTATCCCTAAGTTTGCCTGTCAGCCTTGACCC
1 TCTGCCTA-TCGGCTTTGACCCTAGAGACTTTCCTATCCCTAAGTCTGCCTGTCAGCTTTGACCT
* * ** * * *
432064 TGTAAACT-TTTCTACCCCATAG
65 TGGAGACTGCCTC-A-TCTAAAG
* * * * * * * * * *
432086 TCTGCCTGTCAGCTTTGA-CCTGGATAC-TACC--TCCTTTTAAGTCTACTTATCGGCTTTGAGC
1 TCTGCCTATCGGCTTTGACCCTAGAGACTTTCCTATCC--CTAAGTCTGCCTGTCAGCTTTGA-C
* * * *
432147 CTAGGAGACTGCCTCCTTTTAAG
63 CTTGGAGACTGCCTCATCTAAAG
* * * * * * *
432170 TCTGCCTATTGGCTTTGACCTTGGAGACTTTCCTATCTCTTAGTTTGCCTGTCGGCTTTGACC-T
1 TCTGCCTATCGGCTTTGACCCTAGAGACTTTCCTATCCCTAAGTCTGCCTGTCAGCTTTGACCTT
*
432234 GGAGACTACCTCATCTAAAG
66 GGAGACTGCCTCATCTAAAG
* * ** * * * * *
432254 TCTGCTTGTCAACTTTGACCCTAGAGAC-TGCCTCAT--CTAAAGTTTGCCTATCGGCTTTAACC
1 TCTGCCTATCGGCTTTGACCCTAGAGACTTTCCT-ATCCCT-AAGTCTGCCTGTCAGCTTTGACC
* *
432316 TTAGAGACTTTCCT-ATCCCT-AAG
64 TTGGAGAC-TGCCTCAT--CTAAAG
* * * * ** * * * * * * * *
432339 TTTGCTTGTCAGCTTTGACTTTAGAGACTTTTCTATCCCTTAGCCTGCTTATCCGCTTCGACCCT
1 TCTGCCTATCGGCTTTGACCCTAGAGACTTTCCTATCCCTAAGTCTGCCTGTCAGCTTTGACCTT
* *
432404 GGAGACTGCCTC-TTTTAAG
66 GGAGACTGCCTCATCTAAAG
* * * * * * * *
432423 TCTGCC-AGTTGGCTTTGGCCCAAAAGACTTTCCTATCCCTTAGTTTGCCTGTCGGCTTTGACCC
1 TCTGCCTA-TCGGCTTTGACCCTAGAGACTTTCCTATCCCTAAGTCTGCCTGTCAGCTTTGACCT
* * * *
432487 TAGAGACTACCTCATTTTAAG
65 TGGAGACTGCCTCATCTAAAG
* * * * * * * * * * * *
432508 TTTGTCTGTCGACTTTGAACCTCGATACTTTTCTATCCCTTAGTCTGCTTATCGGCTTTGA-CTC
1 TCTGCCTATCGGCTTTGACCCTAGAGACTTTCCTATCCCTAAGTCTGCCTGTCAGCTTTGACCT-
* * * * **
432572 TAGAGACTACCACATTTTCAG
65 TGGAGACTGCCTCATCTAAAG
* * * * **
432593 TCTACCTGTCGACTTTGACCCTAGAGACTTTCCTATCCCTTAGTCTGCCTGTTGGCTTTGACCTT
1 TCTGCCTATCGGCTTTGACCCTAGAGACTTTCCTATCCCTAAGTCTGCCTGTCAGCTTTGACCTT
* *
432658 AGAGACTGCCTCATCTAAAA
66 GGAGACTGCCTCATCTAAAG
* * * * *
432678 TCTGCGTGTCAGCTTTGACCCT-GAAGAC-TGCCTCAT--CTAAAGTCTACCTGTC-GACTTTGA
1 TCTGCCTATCGGCTTTGACCCTAG-AGACTTTCCT-ATCCCT-AAGTCTGCCTGTCAG-CTTTGA
* *
432738 CCTTTGAGACTTTCCT-ATCCCT-AAG
62 CCTTGGAGAC-TGCCTCAT--CTAAAG
* * * * * * * *
432763 TCTGCCTGTCGGCTTTGACCTTGGATACTTTCCTATCCCTAAGTCT-TCTCGTCGGCTTTAACCA
1 TCTGCCTATCGGCTTTGACCCTAGAGACTTTCCTATCCCTAAGTCTGCCT-GTCAGCTTTGACCT
* *
432827 TGGAGACTTTCCT-ATCCCT-TAG
65 TGGAGAC-TGCCTCAT--CTAAAG
* ** * * * * * * * * *
432849 TTTATCTATCGACTTTGACCTTGGAAAC-TGCCTCAT--CTAAAGTTTGCCTAT-TGACTTTAAC
1 TCTGCCTATCGGCTTTGACCCTAGAGACTTTCCT-ATCCCT-AAGTCTGCCTGTCAG-CTTTGAC
* * *
432910 CTTGAAAACTTTCCT-ATCCCT-AAG
63 CTTGGAGAC-TGCCTCAT--CTAAAG
* * * * * * * * *
432934 TCTGCCTGTCAGCTTTGACCTTGGTGACTTTCCTATCCCTTAGTCTGCATGTCGGCTTTGACCCT
1 TCTGCCTATCGGCTTTGACCCTAGAGACTTTCCTATCCCTAAGTCTGCCTGTCAGCTTTGACCTT
* * *
432999 AGAGACTTCCTCATCTAAAA
66 GGAGACTGCCTCATCTAAAG
* * * * * * * *
433019 TCTACCTATCAGCTTTGACCTTGGAGACTTTCCTATCCCTAAGTCTGCCTGTCGGTTTTAACCCT
1 TCTGCCTATCGGCTTTGACCCTAGAGACTTTCCTATCCCTAAGTCTGCCTGTCAGCTTTGACCTT
** ** **
433084 AAAGACT-TTTCTATCCCT-TTG
66 GGAGACTGCCTC-AT--CTAAAG
* * * * * * *
433105 TCTGCCTATCAGGCTTTGTCCTTCGCGAC-TACCTCAT--CTAAAGTCTACTTGTCAGCTTTGAC
1 TCTGCCTATC-GGCTTTGACCCTAGAGACTTTCCT-ATCCCT-AAGTCTGCCTGTCAGCTTTGA-
* ** * *
433167 CCTAGGAGACTTTCTTATCCCT-TAG
62 CCTTGGAGACTGCCTCAT--CTAAAG
* * * * * ** * *
433192 TCTGTCTATCGACTTTGACCTTAGAGAC-TACATTAT-TTTAAGTCTACCTATC-GCTTTGACC-
1 TCTGCCTATCGGCTTTGACCCTAGAGACTTTC-CTATCCCTAAGTCTGCCTGTCAGCTTTGACCT
* *
433253 TGAAAACTGCCTCATCTAAAG
65 TGGAGACTGCCTCATCTAAAG
* * * * * ** * *
433274 TCTACCTGTTGGCTTTGACCCTAGAGA-ATGCCTCAT--CTAAAGTCTATCTATC-GACTTCGAC
1 TCTGCCTATCGGCTTTGACCCTAGAGACTTTCCT-ATCCCT-AAGTCTGCCTGTCAG-CTTTGAC
*
433335 CTTGGAGACTTTCCT-ATCCCT-AAG
63 CTTGGAGAC-TGCCTCAT--CTAAAG
* * * ** * * * ** *
433359 TCTACTTGTCGGCTTTGACATTGGAGACTTTCCTATCCCTTAGTCTGCCTTTTGGCTTTGACCCT
1 TCTGCCTATCGGCTTTGACCCTAGAGACTTTCCTATCCCTAAGTCTGCCTGTCAGCTTTGACCTT
* * *
433424 AGAGACTACCTCATCTAAAT
66 GGAGACTGCCTCATCTAAAG
* * * * * * *
433444 TTTGCCTATTGGATTTGACCCTAGAGACTTTTCTATCCCTAAGTCTACCTATC-GACTTTGACCC
1 TCTGCCTATCGGCTTTGACCCTAGAGACTTTCCTATCCCTAAGTCTGCCTGTCAG-CTTTGACCT
* * * *
433508 TAGAGTCTTTCCT-ATCCCT-TAG
65 TGGAGAC-TGCCTCAT--CTAAAG
* * * * * *
433530 TCTGTCTGTCGGCTTTGACCCTAGAGAC-TACCTCAT--CTAAAGTCTGCTTGTCGGCTCTGACC
1 TCTGCCTATCGGCTTTGACCCTAGAGACTTTCCT-ATCCCT-AAGTCTGCCTGTCAGCTTTGACC
* * *
433592 CTGGAAACTTTCCT-ATCCCT-AAG
64 TTGGAGAC-TGCCTCAT--CTAAAG
* * * * *
433615 TCTGCCTATCAGCTTTGACCTTTGAGACTTTCCTA-CCACTTAGTCTGCCTGTCGGACTTTGACC
1 TCTGCCTATCGGCTTTGACCCTAGAGACTTTCCTATCC-CTAAGTCTGCCTGTCAG-CTTTGACC
* * *
433679 CTAGAGACTGTCTCATCTAAAG
64 TTGGAGACTGCCTCATCTAAAG
* ** * * *
433701 TCTGCCTGTCAACTTTGACCCT-GAAGACTTTCCTATCTCTAAGTCTACCTGTC-GACCTTGACC
1 TCTGCCTATCGGCTTTGACCCTAG-AGACTTTCCTATCCCTAAGTCTGCCTGTCAG-CTTTGACC
* ** * *
433764 ATGGAGACTTTCTTATCCCT-TAG
64 TTGGAGACTGCCTCAT--CTAAAG
* * * ** * *
433787 TCTGCCTGTCAGCTTTGACCCTAGAGAC-TACCTCAT-TTTAAGTCTGCCTGTCGGCTTTGACCC
1 TCTGCCTATCGGCTTTGACCCTAGAGACTTTCCT-ATCCCTAAGTCTGCCTGTCAGCTTTGACCT
* ** *
433850 TAGAGACT-TTTCTATCCCT-TAG
65 TGGAGACTGCCTC-AT--CTAAAG
* * * * * ** * * *
433872 TTTGCTTGTCGACTTTGACCCTAGAGAC-TACCTCAT-TTTAAGTCTACATGTCAGTTTTGA-CT
1 TCTGCCTATCGGCTTTGACCCTAGAGACTTTCCT-ATCCCTAAGTCTGCCTGTCAGCTTTGACCT
* * *
433934 CTAGAGACTTTCCT-ATCCCT-TAG
65 -TGGAGAC-TGCCTCAT--CTAAAG
* * * * * * * * * *
433957 TCTACTTGTCGACTTTGACCTTAGAGAC-TACCTCAT--CTAAAGTTTACCTGTCGGCTTTCACC
1 TCTGCCTATCGGCTTTGACCCTAGAGACTTTCCT-ATCCCT-AAGTCTGCCTGTCAGCTTTGACC
* * *
434019 TTGGAGACTTTCC-CCTCCTTAAG
64 TTGGAGAC-TGCCTCAT-CTAAAG
* * * * * * * * *
434042 TCTGCTTGTCGGTTTTGACCCTGGAGACATTCCTA-CCCTTTAGTCTGCTTGTCAGCTTTAACCC
1 TCTGCCTATCGGCTTTGACCCTAGAGACTTTCCTATCCC-TAAGTCTGCCTGTCAGCTTTGACCT
* * *
434106 TGGAGACTACCTC-CCTCAA-
65 TGGAGACTGCCTCATCTAAAG
* * * * *
434125 TCTGCCTATCGGCTTTGACTCGT-GAGACTTTCCT-TCCCTCAGTTTGCATGTCGGCTTTGACCT
1 TCTGCCTATCGGCTTTGAC-CCTAGAGACTTTCCTATCCCTAAGTCTGCCTGTCAGCTTTGACCT
*
434188 TGAAGACTGCCTCATCTAAAG
65 TGGAGACTGCCTCATCTAAAG
* * * ** * * *
434209 TCTACCTGTCAGCTTTGACCCTAGAGACTTTCCCCTCCCTAAGTATGCCTATCGGCTTTGACC
1 TCTGCCTATCGGCTTTGACCCTAGAGACTTTCCTATCCCTAAGTCTGCCTGTCAGCTTTGACC
434272 CTAAAAACTT
Statistics
Matches: 2626, Mismatches: 635, Indels: 397
0.72 0.17 0.11
Matches are distributed among these distances:
80 1 0.00
81 5 0.00
82 78 0.03
83 149 0.06
84 486 0.19
85 1196 0.46
86 585 0.22
87 121 0.05
88 5 0.00
ACGTcount: A:0.19, C:0.28, G:0.17, T:0.36
Consensus pattern (85 bp):
TCTGCCTATCGGCTTTGACCCTAGAGACTTTCCTATCCCTAAGTCTGCCTGTCAGCTTTGACCTT
GGAGACTGCCTCATCTAAAG
Found at i:431806 original size:508 final size:508
Alignment explanation
Indices: 430772--432051 Score: 1346
Period size: 508 Copynumber: 2.5 Consensus size: 508
430762 ATCTAAAGTT
* * * * *** * * *
430772 TGCCTGTCAACTTTGACCTTGGAGACTGCCTTATCCAAAGTCTGCCAATCGACTTTGACCTTGGA
1 TGCCTGTCAGCTTTGACCCTGGAGACTGCCTCATCTAAAGTCTGCGTGTCAACTTTGACCCTAGA
* * * * * *
430837 GACTTTCCT-ATCCCTAAGTCTGTCTGCCGGCC-TTGACCTTGGCGACTTTCCTATCCCTTAGTT
66 GA-ATACCTCAT-CTTAAGTCTGTCTGTC-GCCTTTGACCTTGGAGACTTTCCTATCCCTTAGTA
* * * * * *
430900 TGCTTGTCAGCTTTGACCTAGAGATTGCCTCATCTAAAGTCTGCTTGTCAGCTTTGACTCTAGAG
128 TGCCTGTCGGCTTTCACCTAGAGATTGCCTCATCTAAAGTCTGCATGTCAGCTTTAACCCTAGAG
* *
430965 ACTTTCCTATCCCTAAGTGTGCTAGTTCGCTTTGACCCTGGAGACTTTCCTATCCCTTAGTCTGC
193 ACTTTCCAATCCCTAAGTCTGCTAGTTCGCTTTGACCCTGGAGACTTTCCTATCCCTTAGTCTGC
* * *
431030 CTGTTGGCTTTGATGCTGGAGACTGCCTCATCTAAAGTCTGCCTATCAACTTTGATCCTAAAGAC
258 CTGTTGGCTTTCATCCTGGAGACTGCCTCATCTAAAGTCTGCCTATCAACTTTGACCCTAAAGAC
*
431095 TTTCCTATCCCTAAGTCTACCTGTCAGCTTTGACCCTTAGAGACTTTTTTATCCCATAGTCTGCT
323 TTTCCTATCCCTAAGTCTACCTGTCAGCTTTGACCCTTAGAGACTTTTCTATCCCATAGTCTGCT
* * *
431160 TGTCGTCTTTGACCTTAAAGACTACCTCATCTAAAGTTTGCCTATCGACTTTGACCTTAGAGACT
388 TGTCGGCTTTGACCCTAAAGACTACCTCATCTAAAGTCTGCCTATCGACTTTGACCTTAGAGACT
* * * ** *
431225 TCCTATCCCTAAGTCTGCCTGTCAACTTTGACCCTGTAGACTTTTTTATCCTTATTC
453 GCC-ATCCCTAAGTCTGCCTATCAACTTTGACCCTGAAGACTTTCCTATCCTTAGTC
* * * * ** * *
431282 TGCCTGTCAGCTTTGA-CCTGGAGACTGCCTCTTTTTAAGTCTGCTTGTCCGCTTTGACTCTGGA
1 TGCCTGTCAGCTTTGACCCTGGAGACTGCCTCATCTAAAGTCTGCGTGTCAACTTTGACCCTAGA
* * * *
431346 GAATACCTCCTTTTAAGTCTGTCTGTCGCCTTTGACCTTAGAGATTTTCCTATCCCTTAGTATGC
66 GAATACCTCATCTTAAGTCTGTCTGTCGCCTTTGACCTTGGAGACTTTCCTATCCCTTAGTATGC
* * * **
431411 CTGTTGGCTTTCACCTAGAGATTGCCTTATCTAAAGTTTGCATGTTGGCTTTAACCCTAGAGACT
131 CTGTCGGCTTTCACCTAGAGATTGCCTCATCTAAAGTCTGCATGTCAGCTTTAACCCTAGAGACT
* * *
431476 TTCCAATCCCTAAGTCTGCCTA-TTGGCTTTGACCTTGGAGACTTTTCTATCCCTTAGTCTGCCT
196 TTCCAATCCCTAAGTCTG-CTAGTTCGCTTTGACCCTGGAGACTTTCCTATCCCTTAGTCTGCCT
* * ** *
431540 GTCT-GCTTTCA-CCTTGGAGATTGCCTCATCTAAAGTCTGCTTATCGGCTTTGGCCCTAGAA-A
260 GT-TGGCTTTCATCC-TGGAGACTGCCTCATCTAAAGTCTGCCTATCAACTTTGACCCTA-AAGA
* * *
431602 CTTTCCTATCCCTAAGTCTGCCTGTCAGCTTTGACCCTT-TAGACTTTTCTATCCTATAGTCTGC
322 CTTTCCTATCCCTAAGTCTACCTGTCAGCTTTGACCCTTAGAGACTTTTCTATCCCATAGTCTGC
* * * * * * * * * *
431666 TTGTCGGCTTTGACCCTAAAGACTGCCTCCTTTTAAGTCTGCTTGTCGGCTTTGAGCTTGGATAC
387 TTGTCGGCTTTGACCCTAAAGACTACCTCATCTAAAGTCTGCCTATCGACTTTGACCTTAGAGAC
* ** *
431731 TGCC-TCCTCTTAAGTTTGCCTATCGGCTTTGACCTTGAAGACTTTCCTATCCCTTAGTC
452 TGCCATCC-C-TAAGTCTGCCTATCAACTTTGACCCTGAAGACTTTCCTAT-CCTTAGTC
**
431790 TGCCTGTGGGCTTTGACCCTGGAGACTGCCTCATCTAAAGTCTGCGTGTCAACTTTGACCCTAGA
1 TGCCTGTCAGCTTTGACCCTGGAGACTGCCTCATCTAAAGTCTGCGTGTCAACTTTGACCCTAGA
* * * * * * * * *
431855 GACTGCCTCATCTAAAGTCTGCCTATCGACTTTAACCTTGGAGACTTTCCTATCCCTAAGTCTGC
66 GAATACCTCATCTTAAGTCTGTCTGTCGCCTTTGACCTTGGAGACTTTCCTATCCCTTAGTATGC
* * * * * * * *
431920 CTGTCGGCTTTGACTTTAGAGACT-CTTCTATCCCT-TAGTCTGCTTATCAGCTTTGACCCTAGA
131 CTGTCGGCTTTCAC-CTAGAGATTGCCTC-AT--CTAAAGTCTGCATGTCAGCTTTAACCCTAGA
* * * * * * * * *
431983 GAC-TACC--TCCTTTTAAGCCTACCAGTTGGCTTTGACCCTAGAGACTTTCCTATCCCTAAGTT
192 GACTTTCCAATCC--CTAAGTCTGCTAGTTCGCTTTGACCCTGGAGACTTTCCTATCCCTTAGTC
432045 TGCCTGT
255 TGCCTGT
432052 CAGCCTTGAC
Statistics
Matches: 632, Mismatches: 121, Indels: 34
0.80 0.15 0.04
Matches are distributed among these distances:
505 3 0.00
506 1 0.00
507 113 0.18
508 265 0.42
509 152 0.24
510 72 0.11
511 24 0.04
512 2 0.00
ACGTcount: A:0.18, C:0.28, G:0.18, T:0.36
Consensus pattern (508 bp):
TGCCTGTCAGCTTTGACCCTGGAGACTGCCTCATCTAAAGTCTGCGTGTCAACTTTGACCCTAGA
GAATACCTCATCTTAAGTCTGTCTGTCGCCTTTGACCTTGGAGACTTTCCTATCCCTTAGTATGC
CTGTCGGCTTTCACCTAGAGATTGCCTCATCTAAAGTCTGCATGTCAGCTTTAACCCTAGAGACT
TTCCAATCCCTAAGTCTGCTAGTTCGCTTTGACCCTGGAGACTTTCCTATCCCTTAGTCTGCCTG
TTGGCTTTCATCCTGGAGACTGCCTCATCTAAAGTCTGCCTATCAACTTTGACCCTAAAGACTTT
CCTATCCCTAAGTCTACCTGTCAGCTTTGACCCTTAGAGACTTTTCTATCCCATAGTCTGCTTGT
CGGCTTTGACCCTAAAGACTACCTCATCTAAAGTCTGCCTATCGACTTTGACCTTAGAGACTGCC
ATCCCTAAGTCTGCCTATCAACTTTGACCCTGAAGACTTTCCTATCCTTAGTC
Found at i:432546 original size:933 final size:930
Alignment explanation
Indices: 430736--432569 Score: 1903
Period size: 933 Copynumber: 2.0 Consensus size: 930
430726 AATCTGTCTA
*
430736 TCGGCTTTGACCCTAGAAACTGCCTCATCTAAAGTTTGCCTGTCAACTTTGACCTTGGAGACTGC
1 TCGGCTTTGACCCTAGAAACTGCCTCATCTAAAGTCTGCCTGTCAACTTTGACCTTGGAGACTGC
* * *
430801 CTTATCCAAAGTCTGCCAATCGACTTTGACCTTGGAGACTTTCCTATCCCTAAGTCTGTCTGCCG
66 CTCATCCAAAGTCTGCCAATCGACTTTGACCTTGAAGACTTTCCTATCCCTAAGTCTGCCTGCCG
* * * * * * * *
430866 GCCTTGACCTTGGCGACTTTCCTATCCCTTAGTTTGCTTGTCAGCTTTGACCTAGAGATTGCCTC
131 GCCTTGACCCTGGAGACTTGCCTAT-CCTAAGTCTGCGTGTCAACTTTGACCTAGAGACTGCCTC
* * * *
430931 ATCTAAAGTCTGCTTGTCAGCTTTGACTCTAGAGACTTTCCTATCCCTAAGTGTGCTAGTTCGCT
195 ATCTAAAGTCTGCCTATCAGCTTTAACTCTAGAGACTTTCCTATCCCTAAGTCTGCTAGTTCGCT
* * ** ** * *
430996 TTGACCCTGGAGACTTTCCTATCCCTTAGTCTGCCTGTTGGCTTTGATGCTGGAGACTGCCTCAT
260 TTGACCCTAGAGACTTTCCTATCCCTTAGTCTGCCTATCAGCTTTGACCCTAGAGACTACCTCAT
* * * *
431061 CTAAAGTCTGCCTATCAACTTTGATCCTAAAGACTTTCCTATCCCTAAGTCTACCTGTCAGCTTT
325 CTAAAGCCTACCTATCAACTTTGACCCTAAAGACTTTCCTATCCCTAAGTCTACCTGTCAGCCTT
* * *
431126 GACCCTTAGAGACTTTTTTATCCCATAGTCTGCTTGTCGTCTTTGACCTTAAAGACTACCTCATC
390 GACCCTTAGAGACTTTTCTACCCCATAGTCTGCCTGTCGTCTTTGACCTTAAAGACTACCTCATC
* * * *
431191 TAAAGTTTGCCTATCGACTTTGACCTTAGAGACTTCCTATCCCTAAGTCTGCCTGTCAACTTTGA
455 TAAAGTCTACCTATCGACTTTGACCTTAGAGACTGCC-ATCCCTAAGTCTGCCTATCAACTTTGA
* ** * * * *
431256 CCCTGTAGACTTTTTTATCCTTATTCTGCCTGTCAGCTTTGACCTGGAGACTGCCTCTTTTTAAG
519 CCCTGGAGACTTTCCTATCCTTATTCTGCCTGTCAGCTTTGACCTGGAGACTACCTCATCTAAAG
** * * * * * * * *
431321 TCTGCTTGTCCGCTTTGACTCTGGAGAATACCTCCTTTTAAGTCTGTCTGTCGCCTTTGACCTTA
584 TCTGCTTGTCAACTTTGACCCTAGAGAATACCTCATCTAAAGTCTGCCTATCGCCTTTAACCTTA
* * ** **
431386 GAGATTTTCCTATCCCTTAGTATGCCTGTTGGCTTTCACCTAGAGATTGCCTTATCTAAAGTTTG
649 GAGACTTTCCTATCCCTAAGTATGCCTGTCAGCTTTCACCTAGAGATTGCCTTATCTAAAGCCTG
* ** * * ****
431451 CATGTTGGCTTTAACCCTAGAGACTTTCCAATCCCTAAGTCTGCCTATTGGCTTTGACCTTGGAG
714 CATATCCGCTTCAACCCTAGAGACTTGCC-ATCCCTAAGTCTGCCTATTGGCTTTGACCCAAAAG
* * * * * *
431516 ACTTTTCTATCCCTTAGTCTGCCTGTCTGCTTTCACCTTGGAGATTGCCTCATCTAAAGTCTGCT
778 ACTTTCCTATCCCTTAGTCTGCCTGTCGGCTTTCACCCTAGAGACTACCTCATCTAAAGTCTGCT
* ** *
431581 TATCGGCTTTGGCCCTAGAAACTTTCCTATCCCTAAGTCTGCCTGTCAGCTTTGACCCTTTAGAC
843 TATCGACTTTGAACCTAGAAACTTTCCTATCCCTAAGTCTGCCTATCAGCTTTGACCCTTTAGAC
431646 TTTTCTATCCTATAGTCTGCTTG
908 TTTTCTATCCTATAGTCTGCTTG
* * * * ** * *
431669 TCGGCTTTGACCCTA-AAGACTGCCTCCTTTTAAGTCTGCTTGTCGGCTTTGAGCTTGGATACTG
1 TCGGCTTTGACCCTAGAA-ACTGCCTCATCTAAAGTCTGCCTGTCAACTTTGACCTTGGAGACTG
* ** * * * * **
431733 CCTCCTCTTAAGTTTGCCTATCGGCTTTGACCTTGAAGACTTTCCTATCCCTTAGTCTGCCTGTG
65 CCTCATCCAAAGTCTGCCAATCGACTTTGACCTTGAAGACTTTCCTATCCCTAAGTCTGCCTGCC
*
431798 GGCTTTGACCCTGGAGAC-TGCCTCAT-CTAAAGTCTGCGTGTCAACTTTGACCCTAGAGACTGC
130 GGCCTTGACCCTGGAGACTTGCCT-ATCCT-AAGTCTGCGTGTCAACTTTGA-CCTAGAGACTGC
*
431861 CTCATCTAAAGTCTGCCTATC-GACTTTAAC-CTTGGAGACTTTCCTATCCCTAAGTCTGCCT-G
192 CTCATCTAAAGTCTGCCTATCAG-CTTTAACTC-TAGAGACTTTCCTATCCCTAAGTCTG-CTAG
** *
431923 -TCGGCTTTGACTTTAGAGACTCTT-CTATCCCTTAGTCTGCTTATCAGCTTTGACCCTAGAGAC
254 TTC-GCTTTGACCCTAGAGACT-TTCCTATCCCTTAGTCTGCCTATCAGCTTTGACCCTAGAGAC
* * * *** * * *
431986 TACCTCCTTTTAAGCCTACC-AGTTGGCTTTGACCCTAGAGACTTTCCTATCCCTAAGTTTGCCT
317 TACCTCATCTAAAGCCTACCTA-TCAACTTTGACCCTAAAGACTTTCCTATCCCTAAGTCTACCT
** *
432050 GTCAGCCTTGACCCTGTA-A-ACTTTTCTACCCCATAGTCTGCCTGTCAG-CTTTGACC-TGGAT
381 GTCAGCCTTGACCCT-TAGAGACTTTTCTACCCCATAGTCTGCCTGTC-GTCTTTGACCTTAAAG
* * * * * *
432111 ACTACCTCCTTTTAAGTCTACTTATCGGCTTTGAGCC-TAGGAGACTGCC-TCCTTTTAAGTCTG
444 ACTACCTCATCTAAAGTCTACCTATCGACTTTGA-CCTTA-GAGACTGCCATCC--CTAAGTCTG
*** * *
432174 CCTATTGGCTTTGACCTTGGAGACTTTCCTATCTCTTAGTT-TGCCTGTCGGCTTTGACCTGGAG
505 CCTATCAACTTTGACCCTGGAGACTTTCCTATC-CTTA-TTCTGCCTGTCAGCTTTGACCTGGAG
* * *
432238 ACTACCTCATCTAAAGTCTGCTTGTCAACTTTGACCCTAGAGACTGCCTCATCTAAAGTTTGCCT
568 ACTACCTCATCTAAAGTCTGCTTGTCAACTTTGACCCTAGAGAATACCTCATCTAAAGTCTGCCT
* * * * *
432303 ATCGGCTTTAACCTTAGAGACTTTCCTATCCCTAAGTTTGCTTGTCAGCTTTGACTTTAGAGACT
633 ATCGCCTTTAACCTTAGAGACTTTCCTATCCCTAAGTATGCCTGTCAGCTTTCAC-CTAGAGA-T
** * * * * **
432368 TTTC-TATCCCT-TAGCCTGCTTATCCGCTTCGACCCTGGAGAC-TGCC-TCTTTTAAGTCTGCC
696 TGCCTTAT--CTAAAGCCTGCATATCCGCTTCAACCCTAGAGACTTGCCATC-CCTAAGTCTGCC
* * *
432429 -AGTTGGCTTTGGCCCAAAAGACTTTCCTATCCCTTAGTTTGCCTGTCGGCTTTGACCCTAGAGA
758 TA-TTGGCTTTGACCCAAAAGACTTTCCTATCCCTTAGTCTGCCTGTCGGCTTTCACCCTAGAGA
* * * * * * * * *
432493 CTACCTCATTTTAAGTTTG-TCTGTCGACTTTGAACCTCGATACTTTTCTATCCCTTAGTCTGCT
822 CTACCTCATCTAAAGTCTGCT-TATCGACTTTGAACCTAGAAACTTTCCTATCCCTAAGTCTGCC
*
432557 TATCGGCTTTGAC
886 TATCAGCTTTGAC
432570 TCTAGAGACT
Statistics
Matches: 725, Mismatches: 151, Indels: 50
0.78 0.16 0.05
Matches are distributed among these distances:
930 3 0.00
931 33 0.05
932 107 0.15
933 536 0.74
934 20 0.03
935 24 0.03
936 2 0.00
ACGTcount: A:0.18, C:0.28, G:0.18, T:0.36
Consensus pattern (930 bp):
TCGGCTTTGACCCTAGAAACTGCCTCATCTAAAGTCTGCCTGTCAACTTTGACCTTGGAGACTGC
CTCATCCAAAGTCTGCCAATCGACTTTGACCTTGAAGACTTTCCTATCCCTAAGTCTGCCTGCCG
GCCTTGACCCTGGAGACTTGCCTATCCTAAGTCTGCGTGTCAACTTTGACCTAGAGACTGCCTCA
TCTAAAGTCTGCCTATCAGCTTTAACTCTAGAGACTTTCCTATCCCTAAGTCTGCTAGTTCGCTT
TGACCCTAGAGACTTTCCTATCCCTTAGTCTGCCTATCAGCTTTGACCCTAGAGACTACCTCATC
TAAAGCCTACCTATCAACTTTGACCCTAAAGACTTTCCTATCCCTAAGTCTACCTGTCAGCCTTG
ACCCTTAGAGACTTTTCTACCCCATAGTCTGCCTGTCGTCTTTGACCTTAAAGACTACCTCATCT
AAAGTCTACCTATCGACTTTGACCTTAGAGACTGCCATCCCTAAGTCTGCCTATCAACTTTGACC
CTGGAGACTTTCCTATCCTTATTCTGCCTGTCAGCTTTGACCTGGAGACTACCTCATCTAAAGTC
TGCTTGTCAACTTTGACCCTAGAGAATACCTCATCTAAAGTCTGCCTATCGCCTTTAACCTTAGA
GACTTTCCTATCCCTAAGTATGCCTGTCAGCTTTCACCTAGAGATTGCCTTATCTAAAGCCTGCA
TATCCGCTTCAACCCTAGAGACTTGCCATCCCTAAGTCTGCCTATTGGCTTTGACCCAAAAGACT
TTCCTATCCCTTAGTCTGCCTGTCGGCTTTCACCCTAGAGACTACCTCATCTAAAGTCTGCTTAT
CGACTTTGAACCTAGAAACTTTCCTATCCCTAAGTCTGCCTATCAGCTTTGACCCTTTAGACTTT
TCTATCCTATAGTCTGCTTG
Found at i:432923 original size:171 final size:171
Alignment explanation
Indices: 432690--433918 Score: 461
Period size: 171 Copynumber: 7.2 Consensus size: 171
432680 TGCGTGTCAG
* * *
432690 CTTTGACCCTGAAGACTGCCTCATCTAAAGTCTACCTGTCGACTTTGACCTTTGAGACTTTCCTA
1 CTTTGACCCTGAAGACTGCCTCATCTAAAGTCTACCTATCGACTTTAACCTTTGAAACTTTCCTA
* *
432755 TCCCTAAGTCTGCCTGTCGGCTTTGACCTTGGAT-ACTTTCCTATCCCTAAGTCTTC-TCGTCGG
66 TCCCTAAGTCTGCCTGTCAGCTTTGACCTTGG-TGACTTTCCTATCCCTAAGTCTGCAT-GTCGG
*
432818 CTTTAACCATGGAGACTTTCCTATCCCTTAGTTTATCTATCGA
129 CTTTAACCATAGAGACTTTCCTATCCCTTAGTTTATCTATCGA
* * * *
432861 CTTTGACCTTGGAA-ACTGCCTCATCTAAAGTTTGCCTATTGACTTTAACC-TTGAAAACTTTCC
1 CTTTGACCCT-GAAGACTGCCTCATCTAAAGTCTACCTATCGACTTTAACCTTTG-AAACTTTCC
*
432924 TATCCCTAAGTCTGCCTGTCAGCTTTGACCTTGGTGACTTTCCTATCCCTTAGTCTGCATGTCGG
64 TATCCCTAAGTCTGCCTGTCAGCTTTGACCTTGGTGACTTTCCTATCCCTAAGTCTGCATGTCGG
* * * * * *
432989 CTTTGACCCTAGAGAC-TTCCTCAT--CTAAAATCTACCTATC-A
129 CTTTAACCATAGAGACTTTCCT-ATCCCT-TAGTTTATCTATCGA
* * * * * ** * *
433030 GCTTTGACCTTGGAGACTTTCCT-ATCCCT-AAGTCTGCCTGTCGGTTTTAACC-CTAAAGACTT
1 -CTTTGACCCTGAAGAC-TGCCTCAT--CTAAAGTCTACCTATCGACTTTAACCTTTGAA-ACTT
* ** * * * * * * *
433092 TTCTATCCCTTTGTCTGCCTATCAGGCTTTGTCCTTCGCGAC-TACCTCAT--CTAAAGTCTACT
61 TCCTATCCCTAAGTCTGCCTGTCA-GCTTTGACCTTGGTGACTTTCCT-ATCCCT-AAGTCTGCA
* * * * * *
433154 TGTCAGCTTTGACCCTAGGAGACTTTCTTATCCCTTAGTCTGTCTATCGA
123 TGTCGGCTTTAACCATA-GAGACTTTCCTATCCCTTAGTTTATCTATCGA
* * * * * * * *
433204 CTTTGA-CCTTAGAGACTACATTATTTTAAGTCTACCTATCG-CTTTGACC--TGAAAAC-TGCC
1 CTTTGACCCTGA-AGACTGCCTCATCTAAAGTCTACCTATCGACTTTAACCTTTG-AAACTTTCC
* ** * * * * * *
433264 TCAT--CTAAAGTCTACCTGTTGGCTTTGACCCTAGAGA-ATGCCTCAT--CTAAAGTCTATC-T
64 T-ATCCCT-AAGTCTGCCTGTCAGCTTTGACCTTGGTGACTTTCCT-ATCCCT-AAGTCT-GCAT
* * ** * * * * * *
433323 ATCGACTTCGACCTTGGAGACTTTCCTATCCCTAAGTCTA-CTTGTCGG
124 GTCGGCTTTAACCATAGAGACTTTCCTATCCCTTAGTTTATC-TATCGA
** * * * * * * * * * * * *
433371 CTTTGACATTGGAGACTTTCCT-ATCCCT-TAGTCTGCCTTTTGGCTTTGACCCTAGAGAC-TAC
1 CTTTGACCCTGAAGAC-TGCCTCAT--CTAAAGTCTACCTATCGACTTTAACCTTTGAAACTTTC
* * * ** * * * * * * * *
433433 CTCAT--CTAAATTTTGCCTATTGGATTTGACCCTAGAGACTTTTCTATCCCTAAGTCTACCTAT
63 CT-ATCCCT-AAGTCTGCCTGTCAGCTTTGACCTTGGTGACTTTCCTATCCCTAAGTCTGCATGT
* * * * * * * *
433496 CGACTTTGACCCTAGAGTCTTTCCTATCCCTTAGTCTGTCTGTCGG
126 CGGCTTTAACCATAGAGACTTTCCTATCCCTTAGTTTATCTATCGA
* * * * * * * * *
433542 CTTTGACCCT-AGAGACTACCTCATCTAAAGTCTGCTTGTCGGCTCTGACCCTGGAAACTTTCCT
1 CTTTGACCCTGA-AGACTGCCTCATCTAAAGTCTACCTATCGACTTTAACCTTTGAAACTTTCCT
* * * * *
433606 ATCCCTAAGTCTGCCTATCAGCTTTGACCTTTGAGACTTTCCTA-CCACTTAGTCTGCCTGTCGG
65 ATCCCTAAGTCTGCCTGTCAGCTTTGACCTTGGTGACTTTCCTATCC-CTAAGTCTGCATGTCGG
* * * * * ** * *
433670 ACTTTGACCCTAGAGACTGT-CTCAT--CTAAAGTCTGCCTGTCAA
129 -CTTTAACCATAGAGACTTTCCT-ATCCCT-TAGTTTATCTATCGA
* * * * * * * * *
433713 CTTTGACCCTGAAGACTTTCCT-ATCTCTAAGTCTACCTGTCGACCTTGACCATGGAGACTTTCT
1 CTTTGACCCTGAAGAC-TGCCTCATCT-AAAGTCTACCTATCGACTTTAACCTTTGAAACTTTCC
* * * * * ** *
433777 TATCCCTTAGTCTGCCTGTCAGCTTTGACCCTAGAGAC-TACCTCAT-TTTAAGTCTGCCTGTCG
64 TATCCCTAAGTCTGCCTGTCAGCTTTGACCTTGGTGACTTTCCT-ATCCCTAAGTCTGCATGTCG
* * * * *
433840 GCTTTGACCCTAGAGACTTTTCTATCCCTTAGTTT-GCTTGTCGA
128 GCTTTAACCATAGAGACTTTCCTATCCCTTAGTTTATC-TATCGA
* * *
433884 CTTTGACCCT-AGAGACTACCTCATTTTAAGTCTAC
1 CTTTGACCCTGA-AGACTGCCTCATCTAAAGTCTAC
433919 ATGTCAGTTT
Statistics
Matches: 833, Mismatches: 163, Indels: 125
0.74 0.15 0.11
Matches are distributed among these distances:
166 1 0.00
167 37 0.04
168 55 0.07
169 28 0.03
170 151 0.18
171 393 0.47
172 140 0.17
173 25 0.03
174 3 0.00
ACGTcount: A:0.20, C:0.28, G:0.16, T:0.36
Consensus pattern (171 bp):
CTTTGACCCTGAAGACTGCCTCATCTAAAGTCTACCTATCGACTTTAACCTTTGAAACTTTCCTA
TCCCTAAGTCTGCCTGTCAGCTTTGACCTTGGTGACTTTCCTATCCCTAAGTCTGCATGTCGGCT
TTAACCATAGAGACTTTCCTATCCCTTAGTTTATCTATCGA
Found at i:433436 original size:128 final size:128
Alignment explanation
Indices: 432135--434485 Score: 897
Period size: 128 Copynumber: 18.4 Consensus size: 128
432125 AGTCTACTTA
* * * * * * * * *
432135 TCGGCTTTGAGCCTAGGAGACTGCCTCCTTTTAAGTCTGCCTATTGGCTTTGACCTTGGAGACTT
1 TCGGCTTTGACCCTA-GAGACTACCTCATCTAAAGTCTGCCTGTCGACTTTGACCCTGGAGACTT
* * * * * * * * *
432200 TCCTATCTCTTAGTTTGCCTGTCGGCTTTGAC-CTGGAGAC-TACCTCAT--CTAAAGTCTGCTT
65 TCCTATCCCTAAGTCTACCTGTCGACTTTGACATTGGAGACTTTCCT-ATCCCT-TAGTCTGCCT
432261 G
128 G
** * * * * * * *
432262 TCAACTTTGACCCTAGAGACTGCCTCATCTAAAGTTTGCCTATCGGCTTTAACCTTAGAGACTTT
1 TCGGCTTTGACCCTAGAGACTACCTCATCTAAAGTCTGCCTGTCGACTTTGACCCTGGAGACTTT
* * * * * * * * *
432327 CCTATCCCTAAGTTTGCTTGTC-AGCTTTGACTTTAGAGACTTTTCTATCCCTTAGCCTGCTTA
66 CCTATCCCTAAGTCTACCTGTCGA-CTTTGACATTGGAGACTTTCCTATCCCTTAGTCTGCCTG
* * * * * * * * * * ***
432390 TCCGCTTCGACCCTGGAGACTGCCTC-TTTTAAGTCTGCCAGTTGGCTTTGGCCCAAAAGACTTT
1 TCGGCTTTGACCCTAGAGACTACCTCATCTAAAGTCTGCCTGTCGACTTTGACCCTGGAGACTTT
* * * * ** * * * * *
432454 CCTATCCCTTAGTTTGCCTGTCGGCTTTGACCCTAGAGAC-TACCTCAT--TTTAAGTTTGTCTG
66 CCTATCCCTAAGTCTACCTGTCGACTTTGACATTGGAGACTTTCCT-ATCCCTT-AGTCTGCCTG
* * * * ** * * * * * *
432516 TCGACTTTGAACCTCGATACT-TTTCTATCCCT-TAGTCTGCTTATCGGCTTTGACTCTAGAGAC
1 TCGGCTTTGACCCTAGAGACTACCTC-AT--CTAAAGTCTGCCTGTCGACTTTGACCCTGGAGAC
* * ** * ** *
432579 -TACCACAT-TTTCAGTCTACCTGTCGACTTTGACCCTAGAGACTTTCCTATCCCTTAGTCTGCC
63 TTTCC-TATCCCTAAGTCTACCTGTCGACTTTGACATTGGAGACTTTCCTATCCCTTAGTCTGCC
432642 TG
127 TG
* * * * * *
432644 TTGGCTTTGACCTTAGAGACTGCCTCATCTAAAATCTGCGTGTC-AGCTTTGACCCTGAAGAC-T
1 TCGGCTTTGACCCTAGAGACTACCTCATCTAAAGTCTGCCTGTCGA-CTTTGACCCTGGAGACTT
* * * *
432707 GCCTCAT--CTAAAGTCTACCTGTCGACTTTGACCTTTGAGACTTTCCTATCCCTAAGTCTGCCT
65 TCCT-ATCCCT-AAGTCTACCTGTCGACTTTGACATTGGAGACTTTCCTATCCCTTAGTCTGCCT
432770 G
128 G
* * * * * * * *
432771 TCGGCTTTGACCTTGGATACTTTCCT-ATCCCT-AAGTCT-TCTCGTCGGCTTTAACCATGGAGA
1 TCGGCTTTGACCCTAGAGAC-TACCTCAT--CTAAAGTCTGCCT-GTCGACTTTGACCCTGGAGA
* * * * * * * * *
432833 CTTTCCTATCCCTTAGTTTATCTATCGACTTTGACCTTGGAAAC-TGCCTCAT--CTAAAGTTTG
62 CTTTCCTATCCCTAAGTCTACCTGTCGACTTTGACATTGGAGACTTTCCT-ATCCCT-TAGTCTG
*
432895 CCTA
125 CCTG
* * * * * * * *
432899 TTGACTTT-AACCTTGAAAACTTTCCT-ATCCCT-AAGTCTGCCTGTC-AGCTTTGACCTTGGTG
1 TCGGCTTTGACCCTAG-AGAC-TACCTCAT--CTAAAGTCTGCCTGTCGA-CTTTGACCCTGGAG
* * * * ** * * *
432960 ACTTTCCTATCCCTTAGTCTGCATGTCGGCTTTGACCCTAGAGAC-TTCCTCAT--CTAAAATCT
61 ACTTTCCTATCCCTAAGTCTACCTGTCGACTTTGACATTGGAGACTTTCCT-ATCCCT-TAGTCT
* *
433022 ACCTA
124 GCCTG
* * * * ** * **
433027 TCAGCTTTGACCTTGGAGACTTTCCT-ATCCCT-AAGTCTGCCTGTCGGTTTTAACCCTAAAGAC
1 TCGGCTTTGACCCTAGAGAC-TACCTCAT--CTAAAGTCTGCCTGTCGACTTTGACCCTGGAGAC
* ** * * * * * * * * * *
433090 TTTTCTATCCCTTTGTCTGCCTATCAGGCTTTGTCCTTCGCGAC-TACCTCAT--CTAAAGTCTA
63 TTTCCTATCCCTAAGTCTACCTGTC-GACTTTGACATTGGAGACTTTCCT-ATCCCT-TAGTCTG
*
433152 CTTG
125 CCTG
* ** * * * * * *
433156 TCAGCTTTGACCCTAGGAGACTTTCTTATCCCT-TAGTCTGTCTATCGACTTTGACCTTAGAGAC
1 TCGGCTTTGACCCTA-GAGACTACCTCAT--CTAAAGTCTGCCTGTCGACTTTGACCCTGGAGAC
* * ** * * * * * * *
433220 -TACATTAT-TTTAAGTCTACCTATCG-CTTTGAC-CTGAAAAC-TGCCTCAT--CTAAAGTCTA
63 TTTC-CTATCCCTAAGTCTACCTGTCGACTTTGACATTGGAGACTTTCCT-ATCCCT-TAGTCTG
433278 CCTG
125 CCTG
* * * ** * * *
433282 TTGGCTTTGACCCTAGAGAATGCCTCATCTAAAGTCTATCTATCGACTTCGACCTTGGAGACTTT
1 TCGGCTTTGACCCTAGAGACTACCTCATCTAAAGTCTGCCTGTCGACTTTGACCCTGGAGACTTT
* * *
433347 CCTATCCCTAAGTCTACTTGTCGGCTTTGACATTGGAGACTTTCCTATCCCTTAGTCTGCCTT
66 CCTATCCCTAAGTCTACCTGTCGACTTTGACATTGGAGACTTTCCTATCCCTTAGTCTGCCTG
* * * * * *
433410 TTGGCTTTGACCCTAGAGACTACCTCATCTAAATTTTGCCTATTGGA-TTTGACCCTAGAGACTT
1 TCGGCTTTGACCCTAGAGACTACCTCATCTAAAGTCTGCCT-GTCGACTTTGACCCTGGAGACTT
* * ** * * *
433474 TTCTATCCCTAAGTCTACCTATCGACTTTGACCCTAGAGTCTTTCCTATCCCTTAGTCTGTCTG
65 TCCTATCCCTAAGTCTACCTGTCGACTTTGACATTGGAGACTTTCCTATCCCTTAGTCTGCCTG
* * * *
433538 TCGGCTTTGACCCTAGAGACTACCTCATCTAAAGTCTGCTTGTCGGCTCTGACCCTGGAAACTTT
1 TCGGCTTTGACCCTAGAGACTACCTCATCTAAAGTCTGCCTGTCGACTTTGACCCTGGAGACTTT
* * * *
433603 CCTATCCCTAAGTCTGCCTATC-AGCTTTGACCTTTGAGACTTTCCTA-CCACTTAGTCTGCCTG
66 CCTATCCCTAAGTCTACCTGTCGA-CTTTGACATTGGAGACTTTCCTATCC-CTTAGTCTGCCTG
** * *
433666 TCGGACTTTGACCCTAGAGACTGTCTCATCTAAAGTCTGCCTGTCAACTTTGACCCTGAAGACTT
1 TCGG-CTTTGACCCTAGAGACTACCTCATCTAAAGTCTGCCTGTCGACTTTGACCCTGGAGACTT
* * *
433731 TCCTATCTCTAAGTCTACCTGTCGACCTTGACCA-TGGAGACTTTCTTATCCCTTAGTCTGCCTG
65 TCCTATCCCTAAGTCTACCTGTCGACTTTGA-CATTGGAGACTTTCCTATCCCTTAGTCTGCCTG
* * * * *
433795 TCAGCTTTGACCCTAGAGACTACCTCATTTTAAGTCTGCCTGTCGGCTTTGACCCTAGAGACTTT
1 TCGGCTTTGACCCTAGAGACTACCTCATCTAAAGTCTGCCTGTCGACTTTGACCCTGGAGACTTT
* * * * * ** * * * * *
433860 TCTATCCCTTAGTTTGCTTGTCGACTTTGACCCTAGAGAC-TACCTCAT--TTTAAGTCTACATG
66 CCTATCCCTAAGTCTACCTGTCGACTTTGACATTGGAGACTTTCCT-ATCCCTT-AGTCTGCCTG
* * * * * * * * *
433922 TCAGTTTTGACTCTAGAGACTTTCCT-ATCCCT-TAGTCTACTTGTCGACTTTGACCTTAGAGAC
1 TCGGCTTTGACCCTAGAGAC-TACCTCAT--CTAAAGTCTGCCTGTCGACTTTGACCCTGGAGAC
* * * * * **
433985 -TACCTCAT--CTAAAGTTTACCTGTCGGCTTTCACCTTGGAGACTTTCCCCT-CCTTAAGTCTG
63 TTTCCT-ATCCCT-AAGTCTACCTGTCGACTTTGACATTGGAGACTTTCCTATCCCTT-AGTCTG
*
434046 CTTG
125 CCTG
* * * * ** * *
434050 TCGGTTTTGACCCTGGAGACATTCCT-ACCCTTTAGTCTGCTTGTC-AGCTTTAACCCTGGAGAC
1 TCGGCTTTGACCCTAGAGAC-TACCTCA-TCTAAAGTCTGCCTGTCGA-CTTTGACCCTGGAGAC
* * * * * * *
434113 -TACC--TCCCTCAA-TCTGCCTATCGGCTTTGAC-TCGTGAGACTTTCCT-TCCCTCAGTTTGC
63 TTTCCTATCCCT-AAGTCTACCTGTCGACTTTGACATTG-GAGACTTTCCTATCCCTTAGTCTGC
*
434172 ATG
126 CTG
* * * *
434175 TCGGCTTTGA-CCTTGAAGACTGCCTCATCTAAAGTCTACCTGTC-AGCTTTGACCCTAGAGACT
1 TCGGCTTTGACCCTAG-AGACTACCTCATCTAAAGTCTGCCTGTCGA-CTTTGACCCTGGAGACT
** * * * * ** ** * *
434238 TTCCCCTCCCTAAGTATGCCTATCGGCTTTGACCCTAAAAACTTTCCTA-CTCTTCAGTCTGCCT
64 TTCCTATCCCTAAGTCTACCTGTCGACTTTGACATTGGAGACTTTCCTATCCCTT-AGTCTGCCT
*
434302 A
128 G
* * * * * * * * * * *
434303 TCAGCTTTGACCCTGGAGACTGCCTC-CCT-CAGTTTGCCTATCGAATTTAACCCTGAAAAACTT
1 TCGGCTTTGACCCTAGAGACTACCTCATCTAAAGTCTGCCTGTCGACTTTGACCCTG-GAGACTT
* * * * * * * *
434366 T-CTTTCCCTCAGTCTAGCTTGTCGACTTTAACCCTAGTAGACTTTTCTA-CCCTTAGTCTGCCT
65 TCCTATCCCTAAGTCTA-CCTGTCGACTTTGA-CATTGGAGACTTTCCTATCCCTTAGTCTGCCT
*
434429 A
128 G
* * * * * *
434430 TCAGCTTTGACCCTAAAGACTTTCCT-ACTCT-CAGTGTGCCTGTCGGCTTTGACCCT
1 TCGGCTTTGACCCTAGAGAC-TACCTCA-TCTAAAGTCTGCCTGTCGACTTTGACCCT
434486 AAACACTACC
Statistics
Matches: 1734, Mismatches: 400, Indels: 178
0.75 0.17 0.08
Matches are distributed among these distances:
123 2 0.00
124 66 0.04
125 57 0.03
126 199 0.11
127 387 0.22
128 736 0.42
129 244 0.14
130 43 0.02
ACGTcount: A:0.19, C:0.29, G:0.16, T:0.35
Consensus pattern (128 bp):
TCGGCTTTGACCCTAGAGACTACCTCATCTAAAGTCTGCCTGTCGACTTTGACCCTGGAGACTTT
CCTATCCCTAAGTCTACCTGTCGACTTTGACATTGGAGACTTTCCTATCCCTTAGTCTGCCTG
Found at i:435024 original size:9 final size:9
Alignment explanation
Indices: 435010--435048 Score: 53
Period size: 9 Copynumber: 4.4 Consensus size: 9
435000 AGTAGAAATC
*
435010 AAAAATTTA
1 AAAAATATA
435019 AAAAATATA
1 AAAAATATA
*
435028 TAAAATATA
1 AAAAATATA
435037 AAAAA-ATA
1 AAAAATATA
435045 AAAA
1 AAAA
435049 TTAATAGAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
8 7 0.26
9 20 0.74
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (9 bp):
AAAAATATA
Found at i:435054 original size:20 final size:21
Alignment explanation
Indices: 435031--435079 Score: 55
Period size: 21 Copynumber: 2.4 Consensus size: 21
435021 AAATATATAA
*
435031 AATATAAA-AAAATAAAAATT
1 AATAGAAATAAAATAAAAATT
* *
435051 AATAGAAATCAAATAAAAAAT
1 AATAGAAATAAAATAAAAATT
*
435072 AAAAGAAA
1 AATAGAAA
435080 AACATCATGA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
20 7 0.29
21 17 0.71
ACGTcount: A:0.76, C:0.02, G:0.04, T:0.18
Consensus pattern (21 bp):
AATAGAAATAAAATAAAAATT
Found at i:435064 original size:21 final size:21
Alignment explanation
Indices: 435040--435079 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
435030 AAATATAAAA
* *
435040 AAATAAAAATTAATAGAAATC
1 AAATAAAAAATAAAAGAAATC
435061 AAATAAAAAATAAAAGAAA
1 AAATAAAAAATAAAAGAAA
435080 AACATCATGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.75, C:0.03, G:0.05, T:0.17
Consensus pattern (21 bp):
AAATAAAAAATAAAAGAAATC
Found at i:435802 original size:81 final size:82
Alignment explanation
Indices: 435644--435868 Score: 283
Period size: 81 Copynumber: 2.8 Consensus size: 82
435634 TAGTAGCTTT
* *
435644 AGGCAGTAGCAGCATCCATCAATACCGATAGCAGCTCGAGCCTCTTCCAGCCCACAAACACGACA
1 AGGCAATAGCAGCATCCATCAATACCGATAGCAGCTCGAGCCTCTTCCAGCCCACGAACACGACA
* *
435709 GTAGCTCTAGCAACTTC
66 GTAACTCCAGCAACTTC
* ** * * * *
435726 A-GCAATAGCAGCATCCATCAATATCGGCAGCAACTCAAGCCTCTTCCAGCCCACGAACATGGCA
1 AGGCAATAGCAGCATCCATCAATACCGATAGCAGCTCGAGCCTCTTCCAGCCCACGAACACGACA
435790 -TCAACTCCAGCAACTTC
66 GT-AACTCCAGCAACTTC
** * * *
435807 AGGCAGCACCAGCATCCATCAATACCGATAGCAGCGCGACCCTCTTCCAGCCCACGAACACG
1 AGGCAATAGCAGCATCCATCAATACCGATAGCAGCTCGAGCCTCTTCCAGCCCACGAACACG
435869 GTAGCAGCTC
Statistics
Matches: 119, Mismatches: 22, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
80 1 0.01
81 68 0.57
82 50 0.42
ACGTcount: A:0.31, C:0.36, G:0.17, T:0.16
Consensus pattern (82 bp):
AGGCAATAGCAGCATCCATCAATACCGATAGCAGCTCGAGCCTCTTCCAGCCCACGAACACGACA
GTAACTCCAGCAACTTC
Found at i:435859 original size:82 final size:81
Alignment explanation
Indices: 435653--435906 Score: 294
Period size: 82 Copynumber: 3.1 Consensus size: 81
435643 TAGGCAGTAG
* * *
435653 CAGCATCCATCAATACCGATAGCAGCTCGAGCCTCTTCCAGCCCACAAACACGACAGT-AGCTCT
1 CAGCATCCATCAATACCGATAGCAGCTCGAGCCTCTTCCAGCCCACGAACACGGCA-TCAGCTCC
** *
435717 AGCAACTTCAGCAATAG
65 AGCAACTTCAGCAGCAC
* ** * * * *
435734 CAGCATCCATCAATATCGGCAGCAACTCAAGCCTCTTCCAGCCCACGAACATGGCATCAACTCCA
1 CAGCATCCATCAATACCGATAGCAGCTCGAGCCTCTTCCAGCCCACGAACACGGCATCAGCTCCA
435799 GCAACTTCAGGCAGCAC
66 GCAACTTCA-GCAGCAC
* * * *
435816 CAGCATCCATCAATACCGATAGCAGCGCGACCCTCTTCCAGCCCACGAACACGGTAGCAGCTCCA
1 CAGCATCCATCAATACCGATAGCAGCTCGAGCCTCTTCCAGCCCACGAACACGGCATCAGCTCCA
** *
435881 GCAGTTTCCAGTAGCAC
66 GCAACTT-CAGCAGCAC
435898 CAGCATCCA
1 CAGCATCCA
435907 CCAACACCAG
Statistics
Matches: 143, Mismatches: 27, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
80 1 0.01
81 62 0.43
82 78 0.55
83 2 0.01
ACGTcount: A:0.30, C:0.37, G:0.17, T:0.16
Consensus pattern (81 bp):
CAGCATCCATCAATACCGATAGCAGCTCGAGCCTCTTCCAGCCCACGAACACGGCATCAGCTCCA
GCAACTTCAGCAGCAC
Found at i:439739 original size:20 final size:20
Alignment explanation
Indices: 439714--439765 Score: 77
Period size: 20 Copynumber: 2.6 Consensus size: 20
439704 TTTTACCCAG
* *
439714 ATGTATCGATACATTTTTCA
1 ATGTATCGATACATGTATCA
*
439734 ATGTATCGATACATGTATGA
1 ATGTATCGATACATGTATCA
439754 ATGTATCGATAC
1 ATGTATCGATAC
439766 CTTCTGTCTT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.33, C:0.13, G:0.15, T:0.38
Consensus pattern (20 bp):
ATGTATCGATACATGTATCA
Found at i:439809 original size:52 final size:51
Alignment explanation
Indices: 439733--439922 Score: 238
Period size: 52 Copynumber: 3.7 Consensus size: 51
439723 TACATTTTTC
** *
439733 AATGTATCGATACATGTATGAATGTATCGATACCTTCTGTCTTTTTTACCCA
1 AATGTATCGATACAT-TAAAAATGTATCGATACATTCTGTCTTTTTTACCCA
439785 AATGTATCGATACATTAAAAAATGTATCGATACATTCTGTCTTTTTTACCCA
1 AATGTATCGATACATT-AAAAATGTATCGATACATTCTGTCTTTTTTACCCA
* *** *
439837 GATGTATCGATACATTCTTCAATGTATCGATACATTCTATC-TTTTTACCCA
1 AATGTATCGATACATT-AAAAATGTATCGATACATTCTGTCTTTTTTACCCA
* * *
439888 AATGTATCAATACATTGAATAATGTATCAATACAT
1 AATGTATCGATACATT-AAAAATGTATCGATACAT
439923 CTAGTTAAAA
Statistics
Matches: 121, Mismatches: 16, Indels: 3
0.86 0.11 0.02
Matches are distributed among these distances:
51 39 0.32
52 82 0.68
ACGTcount: A:0.33, C:0.18, G:0.11, T:0.39
Consensus pattern (51 bp):
AATGTATCGATACATTAAAAATGTATCGATACATTCTGTCTTTTTTACCCA
Found at i:456001 original size:52 final size:52
Alignment explanation
Indices: 455921--456051 Score: 208
Period size: 52 Copynumber: 2.5 Consensus size: 52
455911 CCCGAAATAT
** *
455921 GAAAATTTATCTGCATGTATCGATACATTTAATAGTGTATCGATACATCTCG
1 GAAAATTTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTCG
* * *
455973 GCAAATTTGCCTGCATGTATCGATACATTTTATAATGTATCGATACATCTGG
1 GAAAATTTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTCG
456025 GAAAATTTGCCTGCATGTATCGATACA
1 GAAAATTTGCCTGCATGTATCGATACA
456052 AAGATCAGTG
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
52 72 1.00
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.35
Consensus pattern (52 bp):
GAAAATTTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTCG
Found at i:456064 original size:52 final size:51
Alignment explanation
Indices: 455921--456071 Score: 196
Period size: 52 Copynumber: 2.9 Consensus size: 51
455911 CCCGAAATAT
**
455921 GAAAATTTATCTGCATGTATCGATACATTTAATAGTGTATCGATACATCTCG
1 GAAAATTTGCCTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTCG
* * * *
455973 GCAAATTTGCCTGCATGTATCGATACATTTTATAATGTATCGATACATCTGG
1 GAAAATTTGCCTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTCG
*
456025 GAAAATTTGCCTGCATGTATCGATACA-AAGATCAGTGTATCGATACA
1 GAAAATTTGCCTGCATGTATCGATACATTA-AT-AGTGTATCGATACA
456072 ATGTATCGAT
Statistics
Matches: 87, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
51 2 0.02
52 85 0.98
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.34
Consensus pattern (51 bp):
GAAAATTTGCCTGCATGTATCGATACATTAATAGTGTATCGATACATCTCG
Found at i:456078 original size:13 final size:13
Alignment explanation
Indices: 456060--456084 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
456050 CAAAGATCAG
456060 TGTATCGATACAA
1 TGTATCGATACAA
456073 TGTATCGATACA
1 TGTATCGATACA
456085 TTTAAGTGAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:456162 original size:33 final size:33
Alignment explanation
Indices: 456125--456191 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
456115 AGTAGCTTAA
456125 ATTGTATCGATACAAAAAAATATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
* ***
456158 ATTGTATCGATACAACACTTTATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
456191 A
1 A
456192 AATCGTTGAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.40, C:0.15, G:0.12, T:0.33
Consensus pattern (33 bp):
ATTGTATCGATACAAAAAAATATGTATCGATAC
Found at i:456165 original size:13 final size:13
Alignment explanation
Indices: 456147--456171 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
456137 CAAAAAAATA
456147 TGTATCGATACAT
1 TGTATCGATACAT
456160 TGTATCGATACA
1 TGTATCGATACA
456172 ACACTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:457034 original size:67 final size:68
Alignment explanation
Indices: 456909--457035 Score: 159
Period size: 67 Copynumber: 1.9 Consensus size: 68
456899 ATTGGGTTTT
* * * *
456909 AAAGATGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCAATATTGGACTTAGAGATGAAGATG
1 AAAGATGATAAAGATGCCAATATGCTGATTCAAGGCCAACAATATTGGACTTAAAGATGAAGATG
456974 AGA
66 AGA
* * * *
456977 AAAG-TGATAAAGATGCCAATCTGTTGATTCACGGCCAACGATATT-GAGCTTAAAGATGA
1 AAAGATGATAAAGATGCCAATATGCTGATTCAAGGCCAACAATATTGGA-CTTAAAGATGA
457036 GAAAAAGGAT
Statistics
Matches: 50, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
66 2 0.04
67 44 0.88
68 4 0.08
ACGTcount: A:0.38, C:0.13, G:0.25, T:0.24
Consensus pattern (68 bp):
AAAGATGATAAAGATGCCAATATGCTGATTCAAGGCCAACAATATTGGACTTAAAGATGAAGATG
AGA
Found at i:457153 original size:43 final size:43
Alignment explanation
Indices: 457092--457367 Score: 300
Period size: 43 Copynumber: 6.0 Consensus size: 43
457082 TAAAGATGGA
* *
457092 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT
457135 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT
*
457178 AAAGGTGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACACTGGACTT
1 -AA----AGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT
*
457226 AAAGATGATGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGAT
1 --A-A--A-GGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGAC-T-----T
* * *
457281 AAAGGTGCCAATATGCTGATTCAATGCCAGCTATATTGGACTT
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT
* * * *
457324 AATGGTGCCAATGTGCTGAGTCAAGGCCAGCTATATTGGGCTT
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT
457367 A
1 A
457368 GAATGGTTGC
Statistics
Matches: 205, Mismatches: 14, Indels: 28
0.83 0.06 0.11
Matches are distributed among these distances:
43 81 0.40
44 2 0.01
48 44 0.21
49 72 0.35
50 3 0.01
52 1 0.00
53 1 0.00
55 1 0.00
ACGTcount: A:0.29, C:0.19, G:0.26, T:0.26
Consensus pattern (43 bp):
AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT
Found at i:457258 original size:49 final size:48
Alignment explanation
Indices: 457048--457367 Score: 381
Period size: 49 Copynumber: 6.8 Consensus size: 48
457038 AAAAGGATGT
* * *
457048 CAATGTGCTAATTCAAGGCCAGCTACGTTGAACTTAAAGATGGAAAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT-G---AGGTGC
* *
457100 CAATATGCTGATTCAAGGCCAGCTATATTGGACTT--A-A--AGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAGGTGC
*
457143 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGGTGAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAGGTGC
*
457191 CAATGTGCTGATTCAAGGCCAGCTACACTGGACTTAAAGATGATGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGA-GGTGC
* *
457240 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT-GAGGTGC
* * *
457289 CAATATGCTGATTCAATGCCAGCTATATTGGACTT--A-AT--GGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAGGTGC
* * *
457332 CAATGTGCTGAGTCAAGGCCAGCTATATTGGGCTTA
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTA
457368 GAATGGTTGC
Statistics
Matches: 239, Mismatches: 21, Indels: 24
0.84 0.07 0.08
Matches are distributed among these distances:
43 75 0.31
45 1 0.00
46 2 0.01
47 1 0.00
48 47 0.20
49 81 0.34
50 2 0.01
52 30 0.13
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.26
Consensus pattern (48 bp):
CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAGGTGC
Found at i:457411 original size:33 final size:33
Alignment explanation
Indices: 457367--457504 Score: 226
Period size: 33 Copynumber: 4.2 Consensus size: 33
457357 TATTGGGCTT
* *
457367 AGAATGGTTGCCACCAACTTGTGTGGGCTTTAG
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
457400 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
*
457433 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAAA
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTT-AG
457467 AGAA-GGTTGCCACCGACTTGTGTGGGCTTT-G
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
457498 AGAAGGG
1 AGAAGGG
457505 AGAAAGATGC
Statistics
Matches: 99, Mismatches: 4, Indels: 5
0.92 0.04 0.05
Matches are distributed among these distances:
31 4 0.04
32 2 0.02
33 88 0.89
34 5 0.05
ACGTcount: A:0.21, C:0.17, G:0.35, T:0.27
Consensus pattern (33 bp):
AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
Found at i:457662 original size:105 final size:105
Alignment explanation
Indices: 457454--458311 Score: 1075
Period size: 105 Copynumber: 8.5 Consensus size: 105
457444 CACCGACTTG
* * * *
457454 TGTGGGCTTTAAAAG---AAGGTTGCCACCGACTTGTGTGGGCTTTGAGAAGGGAGAAAGA-TGC
1 TGTGGGCTTTAAAAGAAAAAGG-TGCCACGGA-GT-TGTGGGCTTTGAAAAGGGAAAAAGAGTGC
* *
457515 CACGGAATTGTAGACTTAAAAGGGAAAAAGAGTGCCACGGAGT
63 CACGGAGTTGTGGACTTAAAAGGGAAAAAGAGTGCCACGGAGT
457558 TGTGGGCTTTAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTGCCAC
1 TGTGGGCTTTAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTGCCAC
457623 GGAGTTGTGGACTTAAAAGGGAAAAAGAGTGCCACGGAGT
66 GGAGTTGTGGACTTAAAAGGGAAAAAGAGTGCCACGGAGT
* * *
457663 TGTGGGCTTTAAAAGAAAAAGGTGCCACGGAGTTTTGGGTTTTGAAAAGGGAAAAATAGTGCCAC
1 TGTGGGCTTTAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTGCCAC
457728 GGAGTTGTGGACTTAAAAGGGAAAAAGAGTGCCACGGAGT
66 GGAGTTGTGGACTTAAAAGGGAAAAAGAGTGCCACGGAGT
*
457768 TGTGGGCTTTAAAAGAAAAAGGTGCCACAGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTGCCAC
1 TGTGGGCTTTAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTGCCAC
457833 GGAGTTGTGGACTTAAAAGGGAAAAAGAGTGCCACGGAGT
66 GGAGTTGTGGACTTAAAAGGGAAAAAGAGTGCCACGGAGT
*
457873 TGTGGGCTTTAAAAGAAAAAGGTGCCACGGAGTTGTGGGTTTTGAAAAGGGAAAAAGAGTGCCAC
1 TGTGGGCTTTAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTGCCAC
457938 GGAGTTGTGGACTTAAAAGGGAAAAAGAGTGCCACGGAGT
66 GGAGTTGTGGACTTAAAAGGGAAAAAGAGTGCCACGGAGT
* *
457978 TGTGGGCTTTAAAAGAAAAAGGTGCCACGGAGTTGTGGG-TTTTAAAA-AGAAAAAG-GTGCCAC
1 TGTGGGCTTTAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTGCCAC
* *
458040 -GACGTTGTGGACTT-AAAGATGAAAAA-AATGCCACGGAGT
66 GGA-GTTGTGGACTTAAAAG-GGAAAAAGAGTGCCACGGAGT
* *
458079 TGTGGGC-TTAAAAG-----GGTGCCACGGAGTTGTGGAC-TT--AAAGATGAAAAA-AGTGCCA
1 TGTGGGCTTTAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAAG-GGAAAAAGAGTGCCA
* *
458134 CGGAGTTGTGGGCTTAAAA--G-----G-GTGCCATGGAGT
65 CGGAGTTGTGGACTTAAAAGGGAAAAAGAGTGCCACGGAGT
* * * *
458167 TGTGGAC-TTAAAGATGAAAAAAGTGCCACGGAGTTGTGGAC-TT--AAAGATGAAAAA-AGTGC
1 TGTGGGCTTTAAA-A-GAAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAAG-GGAAAAAGAGTGC
*
458227 CACGGAGTTGTGGGCTTAAAA--G-----G-GTGCCACGGAGT
63 CACGGAGTTGTGGACTTAAAAGGGAAAAAGAGTGCCACGGAGT
* *
458262 TGTGGAC-TTAAAGATGAAAAAAGTGCCACGGAGTTGTGGGC-TT-AAAAGGG
1 TGTGGGCTTTAAA-A-GAAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGGG
458312 TGTCACGGAG
Statistics
Matches: 704, Mismatches: 29, Indels: 51
0.90 0.04 0.07
Matches are distributed among these distances:
88 21 0.03
89 1 0.00
90 1 0.00
93 4 0.01
95 158 0.22
96 9 0.01
100 7 0.01
101 25 0.04
102 24 0.03
103 7 0.01
104 45 0.06
105 390 0.55
106 8 0.01
107 4 0.01
ACGTcount: A:0.34, C:0.12, G:0.34, T:0.21
Consensus pattern (105 bp):
TGTGGGCTTTAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTGCCAC
GGAGTTGTGGACTTAAAAGGGAAAAAGAGTGCCACGGAGT
Found at i:457998 original size:34 final size:34
Alignment explanation
Indices: 457507--458310 Score: 840
Period size: 34 Copynumber: 23.9 Consensus size: 34
457497 GAGAAGGGAG
* * *
457507 AAAGA-TGCCACGGAATTGTAGACTTAAAAGGGAA
1 AAAGAGTGCCACGGAGTTGTGGGCTTAAAA-GGAA
457541 AAAGAGTGCCACGGAGTTGTGGGCTTTAAAA-GAA
1 AAAGAGTGCCACGGAGTTGTGGGC-TTAAAAGGAA
457575 AAAG-GTGCCACGGAGTTGTGGGCTTTGAAAAGGGAA
1 AAAGAGTGCCACGGAGTTGTGGGC-TT-AAAA-GGAA
*
457611 AAAGAGTGCCACGGAGTTGTGGACTTAAAAGGGAA
1 AAAGAGTGCCACGGAGTTGTGGGCTTAAAA-GGAA
457646 AAAGAGTGCCACGGAGTTGTGGGCTTTAAAA-GAA
1 AAAGAGTGCCACGGAGTTGTGGGC-TTAAAAGGAA
* *
457680 AAAG-GTGCCACGGAGTTTTGGGTTTTGAAAAGGGAA
1 AAAGAGTGCCACGGAGTTGTGGG-CTT-AAAA-GGAA
* *
457716 AAATAGTGCCACGGAGTTGTGGACTTAAAAGGGAA
1 AAAGAGTGCCACGGAGTTGTGGGCTTAAAA-GGAA
457751 AAAGAGTGCCACGGAGTTGTGGGCTTTAAAA-GAA
1 AAAGAGTGCCACGGAGTTGTGGGC-TTAAAAGGAA
*
457785 AAAG-GTGCCACAGAGTTGTGGGCTTTGAAAAGGGAA
1 AAAGAGTGCCACGGAGTTGTGGGC-TT-AAAA-GGAA
*
457821 AAAGAGTGCCACGGAGTTGTGGACTTAAAAGGGAA
1 AAAGAGTGCCACGGAGTTGTGGGCTTAAAA-GGAA
457856 AAAGAGTGCCACGGAGTTGTGGGCTTTAAAA-GAA
1 AAAGAGTGCCACGGAGTTGTGGGC-TTAAAAGGAA
*
457890 AAAG-GTGCCACGGAGTTGTGGGTTTTGAAAAGGGAA
1 AAAGAGTGCCACGGAGTTGTGGG-CTT-AAAA-GGAA
*
457926 AAAGAGTGCCACGGAGTTGTGGACTTAAAAGGGAA
1 AAAGAGTGCCACGGAGTTGTGGGCTTAAAA-GGAA
457961 AAAGAGTGCCACGGAGTTGTGGGCTTTAAAA-GAA
1 AAAGAGTGCCACGGAGTTGTGGGC-TTAAAAGGAA
* *
457995 AAAG-GTGCCACGGAGTTGTGGGTTTTAAAAAGAA
1 AAAGAGTGCCACGGAGTTGTGGG-CTTAAAAGGAA
* *
458029 AAAG-GTGCCAC-GACGTTGTGGACTTAAAGATGAA
1 AAAGAGTGCCACGGA-GTTGTGGGCTTAAA-AGGAA
*
458063 AAA-AATGCCACGGAGTTGTGGGCTTAAAA-G--
1 AAAGAGTGCCACGGAGTTGTGGGCTTAAAAGGAA
* *
458093 ---G-GTGCCACGGAGTTGTGGACTTAAAGATGAA
1 AAAGAGTGCCACGGAGTTGTGGGCTTAAA-AGGAA
458124 AAA-AGTGCCACGGAGTTGTGGGCTTAAAA-G--
1 AAAGAGTGCCACGGAGTTGTGGGCTTAAAAGGAA
* * *
458154 ---G-GTGCCATGGAGTTGTGGACTTAAAGATGAA
1 AAAGAGTGCCACGGAGTTGTGGGCTTAAA-AGGAA
* *
458185 AAA-AGTGCCACGGAGTTGTGGACTTAAAGATGAA
1 AAAGAGTGCCACGGAGTTGTGGGCTTAAA-AGGAA
458219 AAA-AGTGCCACGGAGTTGTGGGCTTAAAA-G--
1 AAAGAGTGCCACGGAGTTGTGGGCTTAAAAGGAA
* *
458249 ---G-GTGCCACGGAGTTGTGGACTTAAAGATGAA
1 AAAGAGTGCCACGGAGTTGTGGGCTTAAA-AGGAA
458280 AAA-AGTGCCACGGAGTTGTGGGCTTAAAAGG
1 AAAGAGTGCCACGGAGTTGTGGGCTTAAAAGG
458311 GTGTCACGGA
Statistics
Matches: 676, Mismatches: 37, Indels: 115
0.82 0.04 0.14
Matches are distributed among these distances:
27 67 0.10
28 3 0.00
29 3 0.00
32 3 0.00
33 118 0.17
34 205 0.30
35 144 0.21
36 65 0.10
37 68 0.10
ACGTcount: A:0.34, C:0.12, G:0.33, T:0.21
Consensus pattern (34 bp):
AAAGAGTGCCACGGAGTTGTGGGCTTAAAAGGAA
Found at i:458108 original size:61 final size:61
Alignment explanation
Indices: 458027--458212 Score: 320
Period size: 61 Copynumber: 3.0 Consensus size: 61
458017 TTTTAAAAAG
* *
458027 AAAAAGGTGCCAC-GACGTTGTGGACTTAAAGATGAAAAAAATGCCACGGAGTTGTGGGCTT
1 AAAAGGGTGCCACGGA-GTTGTGGACTTAAAGATGAAAAAAGTGCCACGGAGTTGTGGGCTT
458088 AAAAGGGTGCCACGGAGTTGTGGACTTAAAGATGAAAAAAGTGCCACGGAGTTGTGGGCTT
1 AAAAGGGTGCCACGGAGTTGTGGACTTAAAGATGAAAAAAGTGCCACGGAGTTGTGGGCTT
* *
458149 AAAAGGGTGCCATGGAGTTGTGGACTTAAAGATGAAAAAAGTGCCACGGAGTTGTGGACTT
1 AAAAGGGTGCCACGGAGTTGTGGACTTAAAGATGAAAAAAGTGCCACGGAGTTGTGGGCTT
458210 AAA
1 AAA
458213 GATGAAAAAA
Statistics
Matches: 120, Mismatches: 4, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
61 118 0.98
62 2 0.02
ACGTcount: A:0.34, C:0.13, G:0.32, T:0.22
Consensus pattern (61 bp):
AAAAGGGTGCCACGGAGTTGTGGACTTAAAGATGAAAAAAGTGCCACGGAGTTGTGGGCTT
Found at i:458222 original size:156 final size:155
Alignment explanation
Indices: 457925--458331 Score: 611
Period size: 156 Copynumber: 2.6 Consensus size: 155
457915 TGAAAAGGGA
* *
457925 AAAAGAGTGCCACGGAGTTGTGGACTTAAA-AGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTA
1 AAAAGGGTGCCACGGAGTTGTGGACTTAAAGA-TGAAAAA-AGTGCCACGGAGTTGTGGGC-TTA
** *
457989 AAAGAAAAAGGTGCCACGGAGTTGTGGGTTTTAAAAAGAAAAAGGTGCCACGACGTTGTGGACTT
63 AAAG-----GGTGCCACGGAGTTGT-GGACTTAAAAAGAAAAAAGTGCCACGACGTTGTGGACTT
458054 AAAGATGAAAAAAATGCCACGGAGTTGTGGGCTT
122 AAAGATGAAAAAAATGCCACGGAGTTGTGGGCTT
458088 AAAAGGGTGCCACGGAGTTGTGGACTTAAAGATGAAAAAAGTGCCACGGAGTTGTGGGCTTAAAA
1 AAAAGGGTGCCACGGAGTTGTGGACTTAAAGATGAAAAAAGTGCCACGGAGTTGTGGGCTTAAAA
* *
458153 GGGTGCCATGGAGTTGTGGACTTAAAGATGAAAAAAGTGCCACGGA-GTTGTGGACTTAAAGATG
66 GGGTGCCACGGAGTTGTGGACTTAAA-AAGAAAAAAGTGCCAC-GACGTTGTGGACTTAAAGATG
*
458217 AAAAAAGTGCCACGGAGTTGTGGGCTT
129 AAAAAAATGCCACGGAGTTGTGGGCTT
458244 AAAAGGGTGCCACGGAGTTGTGGACTTAAAGATGAAAAAAGTGCCACGGAGTTGTGGGCTTAAAA
1 AAAAGGGTGCCACGGAGTTGTGGACTTAAAGATGAAAAAAGTGCCACGGAGTTGTGGGCTTAAAA
* *
458309 GGGTGTCACGGAGTCGTGGACTT
66 GGGTGCCACGGAGTTGTGGACTT
458332 TGAAGAAAAG
Statistics
Matches: 230, Mismatches: 11, Indels: 13
0.91 0.04 0.05
Matches are distributed among these distances:
155 7 0.03
156 158 0.69
157 2 0.01
161 7 0.03
162 20 0.09
163 35 0.15
164 1 0.00
ACGTcount: A:0.33, C:0.13, G:0.33, T:0.21
Consensus pattern (155 bp):
AAAAGGGTGCCACGGAGTTGTGGACTTAAAGATGAAAAAAGTGCCACGGAGTTGTGGGCTTAAAA
GGGTGCCACGGAGTTGTGGACTTAAAAAGAAAAAAGTGCCACGACGTTGTGGACTTAAAGATGAA
AAAAATGCCACGGAGTTGTGGGCTT
Found at i:458247 original size:95 final size:95
Alignment explanation
Indices: 458094--458307 Score: 410
Period size: 95 Copynumber: 2.3 Consensus size: 95
458084 GCTTAAAAGG
458094 GTGCCACGGAGTTGTGGACTTAAAGATGAAAAAAGTGCCACGGAGTTGTGGGCTTAAAAGGGTGC
1 GTGCCACGGAGTTGTGGACTTAAAGATGAAAAAAGTGCCACGGAGTTGTGGGCTTAAAAGGGTGC
*
458159 CATGGAGTTGTGGACTTAAAGATGAAAAAA
66 CACGGAGTTGTGGACTTAAAGATGAAAAAA
458189 GTGCCACGGAGTTGTGGACTTAAAGATGAAAAAAGTGCCACGGAGTTGTGGGCTTAAAAGGGTGC
1 GTGCCACGGAGTTGTGGACTTAAAGATGAAAAAAGTGCCACGGAGTTGTGGGCTTAAAAGGGTGC
458254 CACGGAGTTGTGGACTTAAAGATGAAAAAA
66 CACGGAGTTGTGGACTTAAAGATGAAAAAA
*
458284 GTGCCACGGAGTTGTGGGCTTAAA
1 GTGCCACGGAGTTGTGGACTTAAA
458308 AGGGTGTCAC
Statistics
Matches: 117, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
95 117 1.00
ACGTcount: A:0.32, C:0.13, G:0.33, T:0.22
Consensus pattern (95 bp):
GTGCCACGGAGTTGTGGACTTAAAGATGAAAAAAGTGCCACGGAGTTGTGGGCTTAAAAGGGTGC
CACGGAGTTGTGGACTTAAAGATGAAAAAA
Found at i:458254 original size:61 final size:61
Alignment explanation
Indices: 458189--458331 Score: 268
Period size: 61 Copynumber: 2.3 Consensus size: 61
458179 GATGAAAAAA
458189 GTGCCACGGAGTTGTGGACTTAAAGATGAAAAAAGTGCCACGGAGTTGTGGGCTTAAAAGG
1 GTGCCACGGAGTTGTGGACTTAAAGATGAAAAAAGTGCCACGGAGTTGTGGGCTTAAAAGG
458250 GTGCCACGGAGTTGTGGACTTAAAGATGAAAAAAGTGCCACGGAGTTGTGGGCTTAAAAGG
1 GTGCCACGGAGTTGTGGACTTAAAGATGAAAAAAGTGCCACGGAGTTGTGGGCTTAAAAGG
* *
458311 GTGTCACGGAGTCGTGGACTT
1 GTGCCACGGAGTTGTGGACTT
458332 TGAAGAAAAG
Statistics
Matches: 80, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
61 80 1.00
ACGTcount: A:0.29, C:0.14, G:0.35, T:0.22
Consensus pattern (61 bp):
GTGCCACGGAGTTGTGGACTTAAAGATGAAAAAAGTGCCACGGAGTTGTGGGCTTAAAAGG
Found at i:458360 original size:32 final size:32
Alignment explanation
Indices: 458305--458366 Score: 88
Period size: 32 Copynumber: 1.9 Consensus size: 32
458295 TTGTGGGCTT
* *
458305 AAAAGGGTGTCACGGAGTCGTGGACTTTGAAG
1 AAAAGGATGCCACGGAGTCGTGGACTTTGAAG
* *
458337 AAAAGGATGCCACTGAGTGGTGGACTTTGA
1 AAAAGGATGCCACGGAGTCGTGGACTTTGA
458367 GAAGAGATTT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
32 26 1.00
ACGTcount: A:0.29, C:0.13, G:0.35, T:0.23
Consensus pattern (32 bp):
AAAAGGATGCCACGGAGTCGTGGACTTTGAAG
Found at i:458500 original size:16 final size:17
Alignment explanation
Indices: 458469--458506 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
458459 GATGCAAATA
* *
458469 ATGATGTTATTGATGTT
1 ATGATGTCATTGATGTC
458486 ATGATGTCA-TGATGTC
1 ATGATGTCATTGATGTC
458502 ATGAT
1 ATGAT
458507 TACAGCAGAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
16 11 0.58
17 8 0.42
ACGTcount: A:0.26, C:0.05, G:0.24, T:0.45
Consensus pattern (17 bp):
ATGATGTCATTGATGTC
Found at i:459652 original size:17 final size:17
Alignment explanation
Indices: 459632--459669 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
459622 GCCTTTGCCC
*
459632 TTTTTT-TTGTGTGTGT
1 TTTTTTGTTTTGTGTGT
*
459648 TTTTTTGTTTTGTTTGT
1 TTTTTTGTTTTGTGTGT
459665 TTTTT
1 TTTTT
459670 GACTTTTTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
16 6 0.32
17 13 0.68
ACGTcount: A:0.00, C:0.00, G:0.18, T:0.82
Consensus pattern (17 bp):
TTTTTTGTTTTGTGTGT
Found at i:459681 original size:12 final size:13
Alignment explanation
Indices: 459664--459689 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
459654 GTTTTGTTTG
459664 TTTTTTGACTTTT
1 TTTTTTGACTTTT
459677 TTTTTTGACTTTT
1 TTTTTTGACTTTT
459690 GTTTGTGTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.08, C:0.08, G:0.08, T:0.77
Consensus pattern (13 bp):
TTTTTTGACTTTT
Found at i:459706 original size:31 final size:29
Alignment explanation
Indices: 459647--459707 Score: 79
Period size: 31 Copynumber: 2.0 Consensus size: 29
459637 TTTGTGTGTG
*
459647 TTTTTTTGTTTTGTTTGTTTTTTGACTTT
1 TTTTTTTGTTTTGTTTGTTGTTTGACTTT
459676 TTTTTTTGACTTTTGTTTGTGTGTTT-ACTTT
1 TTTTTTTG--TTTTGTTTGT-TGTTTGACTTT
459707 T
1 T
459708 GACTGTTCCG
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
29 8 0.29
31 16 0.57
32 4 0.14
ACGTcount: A:0.05, C:0.05, G:0.15, T:0.75
Consensus pattern (29 bp):
TTTTTTTGTTTTGTTTGTTGTTTGACTTT
Found at i:462293 original size:19 final size:20
Alignment explanation
Indices: 462255--462295 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 20
462245 ATAGGATGAC
* *
462255 AATGGATGACTCAAGGCATG
1 AATGCATGACTCAAGACATG
462275 AATGCATGA-TCAAGACATG
1 AATGCATGACTCAAGACATG
462294 AA
1 AA
462296 GTTGACAATG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 11 0.58
20 8 0.42
ACGTcount: A:0.41, C:0.15, G:0.24, T:0.20
Consensus pattern (20 bp):
AATGCATGACTCAAGACATG
Found at i:466661 original size:52 final size:52
Alignment explanation
Indices: 466591--466711 Score: 206
Period size: 52 Copynumber: 2.3 Consensus size: 52
466581 GAAAATTTAT
* *
466591 CTGCATGTATCGATACATTTAATAGTGTATCGATACATCTCGACAAATTTGC
1 CTGCATGTATCGATACATTTAATAATGTATCGATACATCTAGACAAATTTGC
* *
466643 CTGCATGTATCGATACATTTTATAATGTATCGATACATCTAGGCAAATTTGC
1 CTGCATGTATCGATACATTTAATAATGTATCGATACATCTAGACAAATTTGC
466695 CTGCATGTATCGATACA
1 CTGCATGTATCGATACA
466712 AAGATCAGTG
Statistics
Matches: 65, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 65 1.00
ACGTcount: A:0.31, C:0.19, G:0.16, T:0.35
Consensus pattern (52 bp):
CTGCATGTATCGATACATTTAATAATGTATCGATACATCTAGACAAATTTGC
Found at i:466724 original size:52 final size:51
Alignment explanation
Indices: 466591--466731 Score: 194
Period size: 52 Copynumber: 2.7 Consensus size: 51
466581 GAAAATTTAT
*
466591 CTGCATGTATCGATACATTTAATAGTGTATCGATACATCTCGACAAATTTGC
1 CTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTAGACAAATTTGC
* * *
466643 CTGCATGTATCGATACATTTTATAATGTATCGATACATCTAGGCAAATTTGC
1 CTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTAGACAAATTTGC
*
466695 CTGCATGTATCGATACA-AAGATCAGTGTATCGATACA
1 CTGCATGTATCGATACATTA-AT-AGTGTATCGATACA
466732 ATGTATCGAT
Statistics
Matches: 80, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
51 2 0.03
52 78 0.98
ACGTcount: A:0.32, C:0.18, G:0.16, T:0.33
Consensus pattern (51 bp):
CTGCATGTATCGATACATTAATAGTGTATCGATACATCTAGACAAATTTGC
Found at i:466738 original size:13 final size:13
Alignment explanation
Indices: 466720--466744 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
466710 CAAAGATCAG
466720 TGTATCGATACAA
1 TGTATCGATACAA
466733 TGTATCGATACA
1 TGTATCGATACA
466745 TTTAAGTGAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:466803 original size:13 final size:13
Alignment explanation
Indices: 466785--466811 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
466775 AGTAGCTTAA
466785 ATTGTATCGATAC
1 ATTGTATCGATAC
466798 ATTGTATCGATAC
1 ATTGTATCGATAC
466811 A
1 A
466812 ACACTTTATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.33, C:0.15, G:0.15, T:0.37
Consensus pattern (13 bp):
ATTGTATCGATAC
Found at i:467889 original size:1 final size:1
Alignment explanation
Indices: 467883--468009 Score: 101
Period size: 1 Copynumber: 127.0 Consensus size: 1
467873 CCTTCGTACC
* ** * * * * *
467883 AAAAAAAACAAAAAAAAACCAAGAAAAAAAACAAAAAAAACAAAAAAAACAAAAAAAAAACAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * * * * * * * *
467948 AAACAAAAAAAACAAAAAAAACAAAAACAAAAAAAAACAAACAAACAAACAAACAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
468010 GGTCCAAATG
Statistics
Matches: 94, Mismatches: 32, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
1 94 1.00
ACGTcount: A:0.87, C:0.13, G:0.01, T:0.00
Consensus pattern (1 bp):
A
Found at i:467896 original size:9 final size:9
Alignment explanation
Indices: 467882--468009 Score: 139
Period size: 9 Copynumber: 13.0 Consensus size: 9
467872 TCCTTCGTAC
467882 CAAAAAAAA
1 CAAAAAAAA
467891 CAAAAAAAAA
1 C-AAAAAAAA
467901 CCAAGAAAAAAAA
1 -C---AAAAAAAA
467914 CAAAAAAAA
1 CAAAAAAAA
467923 CAAAAAAAA
1 CAAAAAAAA
467932 CAAAAAAAA
1 CAAAAAAAA
*
467941 AACAAAAAAA
1 CA-AAAAAAA
467951 CAAAAAAAA
1 CAAAAAAAA
467960 CAAAAAAAA
1 CAAAAAAAA
467969 CAAAAACAAA
1 CAAAAA-AAA
*
467979 AAAAAACAAA
1 CAAAAA-AAA
467989 CAAACAAACAAA
1 C-AA-AAA-AAA
468001 CAAAAAAAA
1 CAAAAAAAA
468010 GGTCCAAATG
Statistics
Matches: 106, Mismatches: 5, Indels: 16
0.83 0.04 0.13
Matches are distributed among these distances:
9 53 0.50
10 31 0.29
11 5 0.05
12 9 0.08
13 8 0.08
ACGTcount: A:0.86, C:0.13, G:0.01, T:0.00
Consensus pattern (9 bp):
CAAAAAAAA
Found at i:467909 original size:13 final size:11
Alignment explanation
Indices: 467883--468008 Score: 131
Period size: 11 Copynumber: 11.7 Consensus size: 11
467873 CCTTCGTACC
467883 AAAAAAAACAA
1 AAAAAAAACAA
*
467894 AAAAAAACCAA
1 AAAAAAAACAA
467905 GAAAAAAAAC--
1 -AAAAAAAACAA
467915 AAAAAAAAC--
1 AAAAAAAACAA
467924 AAAAAAAACAA
1 AAAAAAAACAA
467935 AAAAAAAACAA
1 AAAAAAAACAA
467946 AAAAACAAA-AA
1 AAAAA-AAACAA
*
467957 AAACAAAA-AA
1 AAAAAAAACAA
*
467967 AACAAAAAC-A
1 AAAAAAAACAA
467977 AAAAAAAACAA
1 AAAAAAAACAA
*
467988 ACAAACAAACAA
1 A-AAAAAAACAA
468000 ACAAAAAAA
1 A-AAAAAAA
468009 AGGTCCAAAT
Statistics
Matches: 100, Mismatches: 8, Indels: 13
0.83 0.07 0.11
Matches are distributed among these distances:
9 18 0.18
10 20 0.20
11 34 0.34
12 28 0.28
ACGTcount: A:0.87, C:0.13, G:0.01, T:0.00
Consensus pattern (11 bp):
AAAAAAAACAA
Found at i:467948 original size:37 final size:36
Alignment explanation
Indices: 467882--468009 Score: 157
Period size: 37 Copynumber: 3.2 Consensus size: 36
467872 TCCTTCGTAC
467882 CAAAAAAAACAAAAAAAAACCAAGAAAAAAAACAAAAAAAA
1 CAAAAAAAAC--AAAAAAA--AA-AAAAAAAACAAAAAAAA
467923 CAAAAAAAACAAAAAAAAAACAAAAAAACAAAAAAAA
1 CAAAAAAAACAAAAAAAAAA-AAAAAAACAAAAAAAA
467960 CAAAAAAAACAAAAACAAAAAAAAACAAACAAACAAACAAA
1 CAAAAAAAACAAAAA-AAAAAAAAA-AAAC-AA-AAA-AAA
468001 CAAAAAAAA
1 CAAAAAAAA
468010 GGTCCAAATG
Statistics
Matches: 81, Mismatches: 0, Indels: 12
0.87 0.00 0.13
Matches are distributed among these distances:
36 1 0.01
37 37 0.46
38 9 0.11
39 9 0.11
40 3 0.04
41 22 0.27
ACGTcount: A:0.86, C:0.13, G:0.01, T:0.00
Consensus pattern (36 bp):
CAAAAAAAACAAAAAAAAAAAAAAAAACAAAAAAAA
Found at i:467959 original size:46 final size:46
Alignment explanation
Indices: 467882--468006 Score: 164
Period size: 46 Copynumber: 2.7 Consensus size: 46
467872 TCCTTCGTAC
* *
467882 CAAAAAAAACAAAAA-AAAACCAAGAAAAAAAACAAAAAAAACAAAAA
1 CAAAAAAAA-AAAAACAAAA-AAACAAAAAAAACAAAAAAAACAAAAA
467929 -AAACAAAAAAAAAACAAAAAAACAAAAAAAACAAAAAAAACAAAAA
1 CAAA-AAAAAAAAAACAAAAAAACAAAAAAAACAAAAAAAACAAAAA
* *
467975 CAAAAAAAAACAAACAAACAAACAAACAAAAA
1 CAAAAAAAAAAAAACAAAAAAACAAA-AAAAA
468007 AAAGGTCCAA
Statistics
Matches: 70, Mismatches: 4, Indels: 8
0.85 0.05 0.10
Matches are distributed among these distances:
46 53 0.76
47 17 0.24
ACGTcount: A:0.86, C:0.14, G:0.01, T:0.00
Consensus pattern (46 bp):
CAAAAAAAAAAAAACAAAAAAACAAAAAAAACAAAAAAAACAAAAA
Found at i:469229 original size:28 final size:28
Alignment explanation
Indices: 469198--469701 Score: 555
Period size: 28 Copynumber: 17.5 Consensus size: 28
469188 TGTTCATCTC
* *
469198 TTCAAAGCCCACAGGTCAGCGGCATCCT
1 TTCAAAGCCCACAAGTCAGTGGCATCCT
* *
469226 TTCAAAGTCCACAAGTCAGTGGCATCTT
1 TTCAAAGCCCACAAGTCAGTGGCATCCT
* *
469254 TTCAAAGCCCATAAGTCAGTGGCAGCCT
1 TTCAAAGCCCACAAGTCAGTGGCATCCT
* *
469282 TTCAAAGCCCACAAGTTAGTGGCTTCCT
1 TTCAAAGCCCACAAGTCAGTGGCATCCT
* * *
469310 TTCAAAACCCATAAGTTAGTGGCATCCT
1 TTCAAAGCCCACAAGTCAGTGGCATCCT
* * * * *
469338 TTTAAAACCCATAAATCAGTGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCATCCT
* *
469366 TCCAAAGCCCACAAGTCAGTGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCATCCT
469394 TTCAAAGCCCACAAGTCAGTGGCATACCCT
1 TTCAAAGCCCACAAGTCAGTGGCAT--CCT
*
469424 TTCAAAGCCCATAAGTCAGTGGCA-CCTT
1 TTCAAAGCCCACAAGTCAGTGGCATCC-T
* *
469452 TTCAAAGCCCACAAGACAGTGGCATCTT
1 TTCAAAGCCCACAAGTCAGTGGCATCCT
*
469480 TTCAAAGCCCACAAGTCAGTGGCATCAT
1 TTCAAAGCCCACAAGTCAGTGGCATCCT
469508 TTCAAAAGCCCACAAGTCAGTGGCATCCTT
1 TTC-AAAGCCCACAAGTCAGTGGCATCC-T
*
469538 TTTAAAGCCCACAAGTCAAG-GGCATCCTT
1 TTCAAAGCCCACAAGTC-AGTGGCATCC-T
*
469567 TTCAAAGCCCACAAGTAAGTGGCATCCT
1 TTCAAAGCCCACAAGTCAGTGGCATCCT
*
469595 TTCAAAGCCCACACAAGTCAGTGGCAACTCTTTT
1 TTCAAAG-CC-CACAAGTCAGTGGC-A-TC--CT
* * *
469629 TTCAAAGCCTATAAGTCAGTGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCATCCT
* *
469657 TTCAAAGGCCACACAAGT-TGATGGCAACTCTT
1 TTCAAA-GCC-CACAAGTCAG-TGGC-A-TCCT
469689 TTCAAAGCCCACA
1 TTCAAAGCCCACA
469702 TAAGCTAGTG
Statistics
Matches: 410, Mismatches: 47, Indels: 36
0.83 0.10 0.07
Matches are distributed among these distances:
27 2 0.00
28 237 0.58
29 75 0.18
30 58 0.14
31 6 0.01
32 22 0.05
33 2 0.00
34 8 0.02
ACGTcount: A:0.30, C:0.30, G:0.17, T:0.23
Consensus pattern (28 bp):
TTCAAAGCCCACAAGTCAGTGGCATCCT
Found at i:469701 original size:32 final size:32
Alignment explanation
Indices: 469235--469759 Score: 269
Period size: 28 Copynumber: 17.8 Consensus size: 32
469225 TTTCAAAGTC
469235 CACAAGTCAGTGGC-A-TCTTTTCAAAG-CC-
1 CACAAGTCAGTGGCAACTCTTTTCAAAGCCCA
* *
469263 CATAAGTCAGTGGCAGC-C-TTTCAAAG-CC-
1 CACAAGTCAGTGGCAACTCTTTTCAAAGCCCA
* * * *
469291 CACAAGTTAGTGGC--TTCCTTTCAAA-ACC-
1 CACAAGTCAGTGGCAACTCTTTTCAAAGCCCA
* * * *
469319 CATAAGTTAGTGGCATC-CTTTT-AAAACCCA
1 CACAAGTCAGTGGCAACTCTTTTCAAAGCCCA
* * *
469349 TA-AA-TCAGTGGC-AC-CCTTCCAAAG-CC-
1 CACAAGTCAGTGGCAACTCTTTTCAAAGCCCA
*
469375 CACAAGTCAGTGGC-AC-CCTTTCAAAG-CC-
1 CACAAGTCAGTGGCAACTCTTTTCAAAGCCCA
*
469403 CACAAGTCAGTGGCATAC-CCTTTCAAAG-CC-
1 CACAAGTCAGTGGCA-ACTCTTTTCAAAGCCCA
*
469433 CATAAGTCAGTGGC-AC-CTTTTCAAAG-CC-
1 CACAAGTCAGTGGCAACTCTTTTCAAAGCCCA
*
469461 CACAAGACAGTGGC-A-TCTTTTCAAAG-CC-
1 CACAAGTCAGTGGCAACTCTTTTCAAAGCCCA
*
469489 CACAAGTCAGTGGC-A-TCATTTCAAAAG-CC-
1 CACAAGTCAGTGGCAACTCTTTTC-AAAGCCCA
* *
469518 CACAAGTCAGTGGCATC-CTTTTTAAAG-CC-
1 CACAAGTCAGTGGCAACTCTTTTCAAAGCCCA
*
469547 CACAAGTCAAG-GGCATC-CTTTTCAAAG-CC-
1 CACAAGTC-AGTGGCAACTCTTTTCAAAGCCCA
* *
469576 CACAAGTAAGTGGC-A-TCCTTTCAAAGCCCA
1 CACAAGTCAGTGGCAACTCTTTTCAAAGCCCA
469606 CACAAGTCAGTGGCAACTCTTTTTTCAAAG-CC-
1 CACAAGTCAGTGGCAACTC--TTTTCAAAGCCCA
* * * *
469638 TATAAGTCAGTGGC-AC-CCTTTCAAAGGCCA
1 CACAAGTCAGTGGCAACTCTTTTCAAAGCCCA
*
469668 CACAAGT-TGATGGCAACTCTTTTCAAAGCCCA
1 CACAAGTCAG-TGGCAACTCTTTTCAAAGCCCA
* * * *
469700 CATAAG-CTAGTGGCACCTTTTTTTAAAAGCCCA
1 CACAAGTC-AGTGGCAAC-TCTTTTCAAAGCCCA
** *
469733 TGCAAGTC-GATGGCAACCCTTTTCAAA
1 CACAAGTCAG-TGGCAACTCTTTTCAAA
469760 TCACCACTTT
Statistics
Matches: 408, Mismatches: 52, Indels: 70
0.77 0.10 0.13
Matches are distributed among these distances:
26 1 0.00
27 9 0.02
28 182 0.45
29 75 0.18
30 57 0.14
31 5 0.01
32 45 0.11
33 25 0.06
34 9 0.02
ACGTcount: A:0.30, C:0.29, G:0.17, T:0.24
Consensus pattern (32 bp):
CACAAGTCAGTGGCAACTCTTTTCAAAGCCCA
Found at i:470669 original size:20 final size:20
Alignment explanation
Indices: 470627--470672 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
470617 TTTTACCCAG
* *
470627 ATGTATCGATACATTTTTCA
1 ATGTATCGATACATATATCA
*
470647 ATGTATCGATACATATATGA
1 ATGTATCGATACATATATCA
470667 ATGTAT
1 ATGTAT
470673 AAATACATTC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.35, C:0.11, G:0.13, T:0.41
Consensus pattern (20 bp):
ATGTATCGATACATATATCA
Done.