Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold312
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1822960
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
File 5 of 12
Found at i:637427 original size:33 final size:33
Alignment explanation
Indices: 637390--637465 Score: 118
Period size: 33 Copynumber: 2.3 Consensus size: 33
637380 TCTAGGATTT
637390 TATCGATACAATGTATCGATACAAAG-ATCAATG
1 TATCGATACAATGTATCGATACAAAGAAT-AATG
**
637423 TATCGATACAATGTATCGATACATTGAATAATG
1 TATCGATACAATGTATCGATACAAAGAATAATG
637456 TATCGATACA
1 TATCGATACA
637466 TTTCTTTAGC
Statistics
Matches: 40, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
33 38 0.95
34 2 0.05
ACGTcount: A:0.41, C:0.14, G:0.14, T:0.30
Consensus pattern (33 bp):
TATCGATACAATGTATCGATACAAAGAATAATG
Found at i:639847 original size:20 final size:20
Alignment explanation
Indices: 639822--639928 Score: 88
Period size: 20 Copynumber: 4.8 Consensus size: 20
639812 AATTTACAAT
639822 TTGTATCGATACATTGTTCA
1 TTGTATCGATACATTGTTCA
639842 TTGTATCGATACATTCTGGGTTTTACCTA
1 TTGTATCGATACA-T-T--G--TT--C-A
* *
639871 GATGTATCGATACATTGTTTA
1 -TTGTATCGATACATTGTTCA
*
639892 TTGTATAGATACATTGTTCA
1 TTGTATCGATACATTGTTCA
*
639912 TTGTATTGATACATTGT
1 TTGTATCGATACATTGT
639929 ATCGATACAT
Statistics
Matches: 71, Mismatches: 6, Indels: 20
0.73 0.06 0.21
Matches are distributed among these distances:
20 46 0.65
21 2 0.03
22 1 0.01
24 3 0.04
26 3 0.04
28 2 0.03
29 2 0.03
30 12 0.17
ACGTcount: A:0.25, C:0.12, G:0.17, T:0.46
Consensus pattern (20 bp):
TTGTATCGATACATTGTTCA
Found at i:639926 original size:13 final size:13
Alignment explanation
Indices: 639910--639939 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
639900 ATACATTGTT
*
639910 CATTGTATTGATA
1 CATTGTATCGATA
639923 CATTGTATCGATA
1 CATTGTATCGATA
639936 CATT
1 CATT
639940 CAGGGTTTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.30, C:0.13, G:0.13, T:0.43
Consensus pattern (13 bp):
CATTGTATCGATA
Found at i:642426 original size:78 final size:79
Alignment explanation
Indices: 642304--642886 Score: 470
Period size: 79 Copynumber: 7.4 Consensus size: 79
642294 TATTTCTGAG
* * * *
642304 GGGATACT-TCAACCCCGATTTTTTTTCCAAAACACCAATTTTTCATAATCAGAGATACTACAAT
1 GGGATACTCT-AACCCCGATTTTATTTCCAAAACACCAATTTTTCATAATCAGGGATACTCCAAC
*
642368 CCTGTTATTTTCGAA
65 CCTATTATTTTCGAA
* * * * * *
642383 GGGATGCTCCAACCCAG-TTTTATTTCTAAAACACCAATTTTTCATAATC-GTAGATACTCCAAT
1 GGGATACTCTAACCCCGATTTTATTTCCAAAACACCAATTTTTCATAATCAG-GGATACTCCAAC
*
642446 CCTATTATTTTTG-A
65 CCTATTATTTTCGAA
* * * **
642460 GGGAATACTTTAACCCC-AGTTTTATTTCCAAAATACTAATTTTT-ATAATTGGGGATACTCCAA
1 GGG-ATACTCTAACCCCGA-TTTTATTTCCAAAACACCAATTTTTCATAATCAGGGATACTCCAA
* *
642523 -CCTCGTTATTTTTG-A
64 CCCT-ATTATTTTCGAA
* * * *
642538 GGAGATACTCAAACCCCGATTTTATTTCTAAAACACCAATTTTTCACAATCGGGGATACTCCAAC
1 GG-GATACTCTAACCCCGATTTTATTTCCAAAACACCAATTTTTCATAATCAGGGATACTCCAAC
* *
642603 CCCATTA-TTTCTGAG
65 CCTATTATTTTC-GAA
* * * * * *
642618 GGGTTACTCTAACCCCGTTTTTATTTCCAAAATACCAAATTTTCATAATTAGGGATACTGCAACC
1 GGGATACTCTAACCCCGATTTTATTTCCAAAACACCAATTTTTCATAATCAGGGATACTCCAACC
* * *
642683 CCATTATTTCCGAG
66 CTATTATTTTCGAA
* * * ** * *
642697 GGGATACTCTAACCCTGATTTTTTTTCCAAAACATCAATTTTTCACCATCTGGGATACTCCAATG
1 GGGATACTCTAACCCCGATTTTATTTCCAAAACACCAATTTTTCATAATCAGGGATACTCCAA-C
*
642762 CC-ATTA-TTTCTGAG
65 CCTATTATTTTC-GAA
* * * ** * * * ** *
642776 GGGATACTCTAATCCTGATTTTATTTTCTGAACACCGATTTTCCACAATTGGGGATACTCCAGCC
1 GGGATACTCTAACCCCGATTTTATTTCCAAAACACCAATTTTTCATAATCAGGGATACTCCAACC
* *
642841 CTTTTATTTTTGAA
66 CTATTATTTTCGAA
* * *
642855 AGGATACTCCAACCCCG-TCTTTATCTCCAAAA
1 GGGATACTCTAACCCCGAT-TTTATTTCCAAAA
642887 TATTAAATTT
Statistics
Matches: 407, Mismatches: 78, Indels: 38
0.78 0.15 0.07
Matches are distributed among these distances:
77 8 0.02
78 130 0.32
79 257 0.63
80 12 0.03
ACGTcount: A:0.29, C:0.23, G:0.12, T:0.36
Consensus pattern (79 bp):
GGGATACTCTAACCCCGATTTTATTTCCAAAACACCAATTTTTCATAATCAGGGATACTCCAACC
CTATTATTTTCGAA
Found at i:642561 original size:157 final size:155
Alignment explanation
Indices: 642293--642801 Score: 567
Period size: 157 Copynumber: 3.2 Consensus size: 155
642283 ATTAATGTTT
* * * * * *
642293 TTATTTCTGAGGGGATACTTCAACCCCGATTTTTTTTCCAAAACACCAATTTTTCATAATCAGAG
1 TTATTTCTGAGGGGATACTTTAACCCCGATTTTATTTCCAAAATACAAATTTTT-ATAATTAGGG
* *
642358 ATACTACAATCCT-GTTATTTTCGAAGGGATGCTCCAACCCAG-TTTTATTTCTAAAACACCAAT
65 ATACTACAA-CCTCGTTATTTTCG-AGGGATACTCAAACCCAGATTTTATTTCTAAAACACCAAT
* *
642421 TTTTCATAATCGTAGATACTCCAATCCTA
128 TTTTCACAATCGTGGATACTCCAATCC-A
* * * *
642450 TTATTTTTGAGGGAATACTTTAACCCC-AGTTTTATTTCCAAAATACTAATTTTTATAATTGGGG
1 TTATTTCTGAGGGGATACTTTAACCCCGA-TTTTATTTCCAAAATACAAATTTTTATAATTAGGG
* * *
642514 ATACTCCAACCTCGTTATTTTTGAGGAGATACTCAAACCCCGATTTTATTTCTAAAACACCAATT
65 ATACTACAACCTCGTTATTTTCGAGG-GATACTCAAACCCAGATTTTATTTCTAAAACACCAATT
* *
642579 TTTCACAATCGGGGATACTCCAACCCCA
129 TTTCACAATCGTGGATACTCCAA-TCCA
* * * *
642607 TTATTTCTGAGGGGTTACTCTAACCCCGTTTTTATTTCCAAAATACCAAATTTTCATAATTAGGG
1 TTATTTCTGAGGGGATACTTTAACCCCGATTTTATTTCCAAAATA-CAAATTTTTATAATTAGGG
* * * * * * * * *
642672 ATACTGCAACCCCATTATTTCCGAGGGGATACTCTAACCCTGATTTTTTTTCCAAAACATCAATT
65 ATACTACAACCTCGTTATTTTCGA-GGGATACTCAAACCCAGATTTTATTTCTAAAACACCAATT
*
642737 TTTCACCATC-TGGGATACTCCAATGCCA
129 TTTCACAATCGT-GGATACTCCAAT-CCA
* * *
642765 TTATTTCTGAGGGGATACTCTAATCCTGATTTTATTT
1 TTATTTCTGAGGGGATACTTTAACCCCGATTTTATTT
642802 TCTGAACACC
Statistics
Matches: 299, Mismatches: 43, Indels: 19
0.83 0.12 0.05
Matches are distributed among these distances:
155 6 0.02
156 37 0.12
157 128 0.43
158 126 0.42
159 2 0.01
ACGTcount: A:0.29, C:0.22, G:0.12, T:0.37
Consensus pattern (155 bp):
TTATTTCTGAGGGGATACTTTAACCCCGATTTTATTTCCAAAATACAAATTTTTATAATTAGGGA
TACTACAACCTCGTTATTTTCGAGGGATACTCAAACCCAGATTTTATTTCTAAAACACCAATTTT
TCACAATCGTGGATACTCCAATCCA
Found at i:642740 original size:158 final size:158
Alignment explanation
Indices: 642293--642801 Score: 596
Period size: 158 Copynumber: 3.2 Consensus size: 158
642283 ATTAATGTTT
* * *
642293 TTATTTCTGAGGGGATACT-TCAACCCCGATTTTT-TTTCCAAAACACCAATTTTTCATAATCAG
1 TTATTTCTGAGGGGATACTCT-AACCCCG-TTTTTATTTCCAAAATACCAAATTTTCATAATTAG
* * * * * *
642356 AGATACTACAATCCTGTTATTTTCGAAGGGATGCTCCAACCCAG-TTTTATTTCTAAAACACCAA
64 GGATACTACAACCCCGTTATTTTCGAGGGGATACTCAAACCCAGATTTTATTTCTAAAACACCAA
* ** *
642420 TTTTTCATAATCGTAGATACTCCAATCCTA
129 TTTTTCACAATCGGGGATACTCCAATCCCA
* * * * * *
642450 TTATTTTTGAGGGAATACTTTAACCCCAG-TTTTATTTCCAAAATA-CTAATTTTTATAATTGGG
1 TTATTTCTGAGGGGATACTCTAACCCC-GTTTTTATTTCCAAAATACCAAATTTTCATAATTAGG
* * * * *
642513 GATACTCCAACCTCGTTATTTTTGAGGAGATACTCAAACCCCGATTTTATTTCTAAAACACCAAT
65 GATACTACAACCCCGTTATTTTCGAGGGGATACTCAAACCCAGATTTTATTTCTAAAACACCAAT
*
642578 TTTTCACAATCGGGGATACTCCAACCCCA
130 TTTTCACAATCGGGGATACTCCAATCCCA
*
642607 TTATTTCTGAGGGGTTACTCTAACCCCGTTTTTATTTCCAAAATACCAAATTTTCATAATTAGGG
1 TTATTTCTGAGGGGATACTCTAACCCCGTTTTTATTTCCAAAATACCAAATTTTCATAATTAGGG
* * * * * * * *
642672 ATACTGCAACCCCATTATTTCCGAGGGGATACTCTAACCCTGATTTTTTTTCCAAAACATCAATT
66 ATACTACAACCCCGTTATTTTCGAGGGGATACTCAAACCCAGATTTTATTTCTAAAACACCAATT
* * *
642737 TTTCACCATCTGGGATACTCCAATGCCA
131 TTTCACAATCGGGGATACTCCAATCCCA
* * *
642765 TTATTTCTGAGGGGATACTCTAATCCTGATTTTATTT
1 TTATTTCTGAGGGGATACTCTAACCCCGTTTTTATTT
642802 TCTGAACACC
Statistics
Matches: 296, Mismatches: 50, Indels: 11
0.83 0.14 0.03
Matches are distributed among these distances:
156 50 0.17
157 117 0.40
158 129 0.44
ACGTcount: A:0.29, C:0.22, G:0.12, T:0.37
Consensus pattern (158 bp):
TTATTTCTGAGGGGATACTCTAACCCCGTTTTTATTTCCAAAATACCAAATTTTCATAATTAGGG
ATACTACAACCCCGTTATTTTCGAGGGGATACTCAAACCCAGATTTTATTTCTAAAACACCAATT
TTTCACAATCGGGGATACTCCAATCCCA
Found at i:642860 original size:158 final size:157
Alignment explanation
Indices: 642293--642886 Score: 545
Period size: 158 Copynumber: 3.8 Consensus size: 157
642283 ATTAATGTTT
* * * ** *
642293 TTATTTCTGAGGGGATACT-TCAACCCCGATTTTTTTTCCAAAACACCAATTTTTCATAATCAGA
1 TTATTTCTGAGGGGATACTCT-AACCCCGATTTTATTTCCAAAACACCAAATTTTCACAATTGGG
* * * * * * * *
642357 GATACTACAATCCTGTTATTTTCGAAGGGATGCTCCAACCCAG-TTTTATTTCTAAAACACCAAT
65 GATACT-CCACCCTATTATTTTTGAAGGGATACTCAAACCCCGATTTTATTTCCAAAACACCAAT
* ** * *
642421 TTTTCATAATCGTAGATACTCCAATCCTA
129 TTTTCACAATCGGGGATACTCCAACCCCA
* * * * * * *
642450 TTATTTTTGAGGGAATACTTTAACCCC-AGTTTTATTTCCAAAATA-CTAATTTTTATAATTGGG
1 TTATTTCTGAGGGGATACTCTAACCCCGA-TTTTATTTCCAAAACACCAAATTTTCACAATTGGG
* * *
642513 GATACTCCAACCTCGTTATTTTTG-AGGAGATACTCAAACCCCGATTTTATTTCTAAAACACCAA
65 GATACTCCACCCT-ATTATTTTTGAAGG-GATACTCAAACCCCGATTTTATTTCCAAAACACCAA
642577 TTTTTCACAATCGGGGATACTCCAACCCCA
128 TTTTTCACAATCGGGGATACTCCAACCCCA
* * * * *
642607 TTATTTCTGAGGGGTTACTCTAACCCCGTTTTTATTTCCAAAATACCAAATTTTCATAATTAGGG
1 TTATTTCTGAGGGGATACTCTAACCCCGATTTTATTTCCAAAACACCAAATTTTCACAATTGGGG
* * ** * * * * *
642672 ATACTGCAACCCCATTATTTCCGAGGGGATACTCTAACCCTGATTTTTTTTCCAAAACATCAATT
66 ATACT-CCACCCTATTATTTTTGAAGGGATACTCAAACCCCGATTTTATTTCCAAAACACCAATT
* * **
642737 TTTCACCATCTGGGATACTCCAATGCCA
130 TTTCACAATCGGGGATACTCCAACCCCA
* * * ** *
642765 TTATTTCTGAGGGGATACTCTAATCCTGATTTTATTTTCTGAACACC-GATTTTCCACAATTGGG
1 TTATTTCTGAGGGGATACTCTAACCCCGATTTTATTTCCAAAACACCAAATTTT-CACAATTGGG
* * * *
642829 GATACTCCAGCCCTTTTATTTTTGAAAGGATACTCCAACCCCG-TCTTTATCTCCAAAA
65 GATACTCCA-CCCTATTATTTTTGAAGGGATACTCAAACCCCGAT-TTTATTTCCAAAA
642887 TATTAAATTT
Statistics
Matches: 358, Mismatches: 67, Indels: 23
0.80 0.15 0.05
Matches are distributed among these distances:
155 8 0.02
156 40 0.11
157 129 0.36
158 175 0.49
159 6 0.02
ACGTcount: A:0.29, C:0.23, G:0.12, T:0.36
Consensus pattern (157 bp):
TTATTTCTGAGGGGATACTCTAACCCCGATTTTATTTCCAAAACACCAAATTTTCACAATTGGGG
ATACTCCACCCTATTATTTTTGAAGGGATACTCAAACCCCGATTTTATTTCCAAAACACCAATTT
TTCACAATCGGGGATACTCCAACCCCA
Found at i:644685 original size:21 final size:20
Alignment explanation
Indices: 644643--644685 Score: 50
Period size: 21 Copynumber: 2.1 Consensus size: 20
644633 GTTAAGAAGT
*
644643 TTGGTGAAAATATCAGCTAA
1 TTGGTGAAAATATCAGCAAA
* *
644663 TTGGTGCAAAGTATCTGCAAA
1 TTGGTG-AAAATATCAGCAAA
644684 TT
1 TT
644686 CGAGTACAAC
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
20 6 0.32
21 13 0.68
ACGTcount: A:0.35, C:0.12, G:0.21, T:0.33
Consensus pattern (20 bp):
TTGGTGAAAATATCAGCAAA
Found at i:647590 original size:15 final size:15
Alignment explanation
Indices: 647570--647599 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
647560 TTGAACTTAA
647570 TTCTATAAATAGGCT
1 TTCTATAAATAGGCT
647585 TTCTATAAATAGGCT
1 TTCTATAAATAGGCT
647600 ATTGTCTCTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.33, C:0.13, G:0.13, T:0.40
Consensus pattern (15 bp):
TTCTATAAATAGGCT
Found at i:650788 original size:44 final size:43
Alignment explanation
Indices: 650692--651169 Score: 300
Period size: 44 Copynumber: 11.0 Consensus size: 43
650682 TTTGATTAGT
* * * ** *
650692 GTGGTAACCATACGTCAGACAGAAAGGAAAA-TATTCAACTAGG
1 GTGGTAACCATACGTCAAACA-AAATGAAAAGAATTTGACCAGG
* * * *
650735 GTGGGAACCATACGTCAAATCAAAATTAAAAGAGTTTGACTAGG
1 GTGGTAACCATACGTCAAA-CAAAATGAAAAGAATTTGACCAGG
* * *
650779 GTGGTAACCATATGTCAAACATGAATGAAAAGAACTTGACCAGG
1 GTGGTAACCATACGTCAAACA-AAATGAAAAGAATTTGACCAGG
* ** * * ** * * *
650823 GTGATAACCATATTTCGAGCAGGATGGAAAGAATCTGACTAGG
1 GTGGTAACCATACGTCAAACAAAATGAAAAGAATTTGACCAGG
* * * * * *
650866 GTGGAAACCATACATCAGATCGAAATAAAAAGAGTTTGACCAGG
1 GTGGTAACCATACGTCA-AACAAAATGAAAAGAATTTGACCAGG
** * * *
650910 GTGGTAACCATATATCAAACATAAT-AGAAAGCACTTGACCAGG
1 GTGGTAACCATACGTCAAACAAAATGA-AAAGAATTTGACCAGG
** ** * * *
650953 GTGGTAACCATACGTCAAGTAGTATAAAAAGAATCTGACCTGG
1 GTGGTAACCATACGTCAAACAAAATGAAAAGAATTTGACCAGG
* * * * * *
650996 GTGTTAACCATACATCAGACTAAAATGAGAAGAGTTTGACCATG
1 GTGGTAACCATACGTCAAAC-AAAATGAAAAGAATTTGACCAGG
*
651040 GTGGTAACCATACGTCAAACATAAATGAAAAGAACTTGACCAGG
1 GTGGTAACCATACGTCAAACA-AAATGAAAAGAATTTGACCAGG
* ** * *
651084 GTGGTAACCATA-GTTAAGTATGAA-GAAAAGAATCTGACCAGG
1 GTGGTAACCATACGTCAAACA-AAATGAAAAGAATTTGACCAGG
** * * * *
651126 GTCATAACCAT-CTGTCAGACCCAAATGGAAAGAGTTTGACCAGG
1 GTGGTAACCATAC-GTCA-AACAAAATGAAAAGAATTTGACCAGG
651170 TCCTAACTCC
Statistics
Matches: 331, Mismatches: 92, Indels: 23
0.74 0.21 0.05
Matches are distributed among these distances:
42 26 0.08
43 133 0.40
44 172 0.52
ACGTcount: A:0.40, C:0.16, G:0.23, T:0.21
Consensus pattern (43 bp):
GTGGTAACCATACGTCAAACAAAATGAAAAGAATTTGACCAGG
Found at i:650854 original size:87 final size:85
Alignment explanation
Indices: 650763--651095 Score: 289
Period size: 87 Copynumber: 3.8 Consensus size: 85
650753 ATCAAAATTA
* * * *
650763 AAAGAGTTTGACTAGGGTGGTAACCATATGTCAAACATGAATGAAAAGAACTTGACCAGGGTGAT
1 AAAGAGTTTGACCAGGGTGGTAACCATACGTCAAACATGAATAAAAAGAACTTGACCAGGGTGGT
* **
650828 AACCATATTTCGAGCAGGATGG
66 AACCATATATC-AGCAAAAT-G
* * * * * * **
650850 AAAGAATCTGACTAGGGTGGAAACCATACATC--AGATCGAAATAAAAAGAGTTTGACCAGGGTG
1 AAAGAGTTTGACCAGGGTGGTAACCATACGTCAAACAT-G-AATAAAAAGAACTTGACCAGGGTG
* *
650913 GTAACCATATATCAAACATAATAG
64 GTAACCATATATC-AGCAAAAT-G
* ** * *
650937 AAAGCA-CTTGACCAGGGTGGTAACCATACGTCAAGTA-GTATAAAAAGAA-TCTGACCTGGGTG
1 AAAG-AGTTTGACCAGGGTGGTAACCATACGTCAAACATGAATAAAAAGAACT-TGACCAGGGTG
* *
650999 TTAACCATACATCAGACTAAAATG
64 GTAACCATATATCAG-C-AAAATG
* * *
651023 AGAAGAGTTTGACCATGGTGGTAACCATACGTCAAACATAAATGAAAAGAACTTGACCAGGGTGG
1 A-AAGAGTTTGACCAGGGTGGTAACCATACGTCAAACATGAATAAAAAGAACTTGACCAGGGTGG
651088 TAACCATA
65 TAACCATA
651096 GTTAAGTATG
Statistics
Matches: 195, Mismatches: 39, Indels: 23
0.76 0.15 0.09
Matches are distributed among these distances:
85 5 0.03
86 35 0.18
87 125 0.64
88 28 0.14
89 2 0.01
ACGTcount: A:0.40, C:0.16, G:0.23, T:0.22
Consensus pattern (85 bp):
AAAGAGTTTGACCAGGGTGGTAACCATACGTCAAACATGAATAAAAAGAACTTGACCAGGGTGGT
AACCATATATCAGCAAAATG
Found at i:651005 original size:130 final size:130
Alignment explanation
Indices: 650740--651169 Score: 473
Period size: 130 Copynumber: 3.3 Consensus size: 130
650730 CTAGGGTGGG
* * * *
650740 AACCATACGTCAAATCAAAATTAAAAGAGTTTGACTAGGGTGGTAACCATATGTCAAACATGAAT
1 AACCATACATCAGATCAAAATGAAAAGAGTTTGACCAGGGTGGTAACCATATGTCAAACAT-AAT
* * * * * **
650805 -GAAAAGAACTTGACCAGGGTGATAACCATATTTCGAGCAGGATGGAAAGAATCTGA-CTAGGGT
65 AGAAAAGAACTTGACCAGGGTGGTAACCATA-GTCAAGTAGTATAAAAAGAATCTGACCT-GGGT
650868 GGA-
128 -GAT
* * *
650871 AACCATACATCAGATCGAAATAAAAAGAGTTTGACCAGGGTGGTAACCATATATCAAACATAATA
1 AACCATACATCAGATCAAAATGAAAAGAGTTTGACCAGGGTGGTAACCATATGTCAAACATAATA
* *
650936 G-AAAGCACTTGACCAGGGTGGTAACCATACGTCAAGTAGTATAAAAAGAATCTGACCTGGGTGT
66 GAAAAGAACTTGACCAGGGTGGTAACCATA-GTCAAGTAGTATAAAAAGAATCTGACCTGGGTGA
651000 T
130 T
* * *
651001 AACCATACATCAGA-CTAAAATGAGAAGAGTTTGACCATGGTGGTAACCATACGTCAAACATAA-
1 AACCATACATCAGATC-AAAATGAAAAGAGTTTGACCAGGGTGGTAACCATATGTCAAACATAAT
* *
651064 ATGAAAAGAACTTGACCAGGGTGGTAACCATAGTTAAGTA-TGA-AGAAAAGAATCTGACCAGGG
65 A-GAAAAGAACTTGACCAGGGTGGTAACCATAGTCAAGTAGT-ATA-AAAAGAATCTGACCTGGG
*
651127 TCAT
127 TGAT
* * * *
651131 AACCAT-CTGTCAGACCCAAATGGAAAGAGTTTGACCAGG
1 AACCATAC-ATCAGATCAAAATGAAAAGAGTTTGACCAGG
651170 TCCTAACTCC
Statistics
Matches: 257, Mismatches: 32, Indels: 21
0.83 0.10 0.07
Matches are distributed among these distances:
129 6 0.02
130 165 0.64
131 86 0.33
ACGTcount: A:0.40, C:0.17, G:0.22, T:0.21
Consensus pattern (130 bp):
AACCATACATCAGATCAAAATGAAAAGAGTTTGACCAGGGTGGTAACCATATGTCAAACATAATA
GAAAAGAACTTGACCAGGGTGGTAACCATAGTCAAGTAGTATAAAAAGAATCTGACCTGGGTGAT
Found at i:651250 original size:47 final size:47
Alignment explanation
Indices: 651152--651263 Score: 143
Period size: 47 Copynumber: 2.4 Consensus size: 47
651142 AGACCCAAAT
* *
651152 GGAAAGAGTTTGACCAGGTCCTAACTCCAATATAATCAAACAAGGGT
1 GGAAAGAGTTTGACCAGGTCCTAACGCCAATATAATCAAACAAGGGA
* * * * *
651199 GGAAAGAGTTTGACCAGGTCTTAACGCCAATATAGTTAAACGATGGA
1 GGAAAGAGTTTGACCAGGTCCTAACGCCAATATAATCAAACAAGGGA
*
651246 GGAAAAGAGTTTAACCAG
1 GG-AAAGAGTTTGACCAG
651264 ATATAGTTAA
Statistics
Matches: 56, Mismatches: 8, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
47 42 0.75
48 14 0.25
ACGTcount: A:0.38, C:0.16, G:0.24, T:0.21
Consensus pattern (47 bp):
GGAAAGAGTTTGACCAGGTCCTAACGCCAATATAATCAAACAAGGGA
Found at i:652058 original size:88 final size:87
Alignment explanation
Indices: 651909--652134 Score: 206
Period size: 88 Copynumber: 2.6 Consensus size: 87
651899 GTAGATATGC
* * ** * * *
651909 GTGAAACGATGCAAATGAAAGCATCAATAAAGTGGCAAATGCTTATGAAATGGTGTAAATACCAA
1 GTGAAACGATGCAAATGAAAGCATCAATAAAATAGCAAATGCACATGAAACGATGCAAATACCAA
651974 TGTCATCTAAAATGCAAATGTAG
66 TGTCATC-AAAATGCAAATGTAG
* * * * *
651997 GTGAAACGATGCAAATGCAGGGATCAATAAAATAGCAAATGCACATGCAACGATGCAAATACGAA
1 GTGAAACGATGCAAATGAAAGCATCAATAAAATAGCAAATGCACATGAAACGATGCAAATACCAA
* * *
652062 TGTTATCAAAACTATC-AGTGT-G
66 TGTCATCAAAA-T-GCAAATGTAG
* * * * *
652084 CGTGAAATGACGCAACTGCAAGCATCAATAAAA-AGGCAAATGCAGATGAAA
1 -GTGAAACGATGCAAATGAAAGCATCAATAAAATA-GCAAATGCACATGAAA
652135 ATATGCATGA
Statistics
Matches: 112, Mismatches: 22, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
87 6 0.05
88 105 0.94
89 1 0.01
ACGTcount: A:0.44, C:0.15, G:0.21, T:0.20
Consensus pattern (87 bp):
GTGAAACGATGCAAATGAAAGCATCAATAAAATAGCAAATGCACATGAAACGATGCAAATACCAA
TGTCATCAAAATGCAAATGTAG
Found at i:653463 original size:13 final size:13
Alignment explanation
Indices: 653445--653470 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
653435 TTATTCAATT
653445 TATCGATACATTG
1 TATCGATACATTG
653458 TATCGATACATTG
1 TATCGATACATTG
653471 ATCTTTGTAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TATCGATACATTG
Found at i:658508 original size:21 final size:20
Alignment explanation
Indices: 658462--658510 Score: 62
Period size: 21 Copynumber: 2.4 Consensus size: 20
658452 CGTTGGGCCA
*
658462 CATGTATCGATACAATTCAG
1 CATGTATCGATACAATTAAG
* *
658482 CATGTATCGATACCATTTAAT
1 CATGTATCGATA-CAATTAAG
658503 CATGTATC
1 CATGTATC
658511 AATATAGTCG
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
20 12 0.48
21 13 0.52
ACGTcount: A:0.33, C:0.20, G:0.12, T:0.35
Consensus pattern (20 bp):
CATGTATCGATACAATTAAG
Found at i:662093 original size:32 final size:33
Alignment explanation
Indices: 662050--662114 Score: 87
Period size: 33 Copynumber: 2.0 Consensus size: 33
662040 CATTTCAAGG
* *
662050 TGTATCAATACTATG-AACATGTATTGATACAT
1 TGTATCAATACTAAGCAACATGTATCGATACAT
* *
662082 TGTATCGATACTAAGCAATATGTATCGATACAT
1 TGTATCAATACTAAGCAACATGTATCGATACAT
662115 CTGGTTGTGC
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
32 13 0.46
33 15 0.54
ACGTcount: A:0.37, C:0.14, G:0.14, T:0.35
Consensus pattern (33 bp):
TGTATCAATACTAAGCAACATGTATCGATACAT
Found at i:663044 original size:24 final size:25
Alignment explanation
Indices: 662997--663044 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 25
662987 ATAGCAAGGC
*
662997 AAACATTCATTACAATCATGAAAGT
1 AAACATTCATTACAATCATCAAAGT
* *
663022 AAACATT-ATTTCAGTCATCAAAG
1 AAACATTCATTACAATCATCAAAG
663045 AAATTCGAGT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 13 0.65
25 7 0.35
ACGTcount: A:0.46, C:0.17, G:0.08, T:0.29
Consensus pattern (25 bp):
AAACATTCATTACAATCATCAAAGT
Found at i:669897 original size:20 final size:20
Alignment explanation
Indices: 669869--669945 Score: 102
Period size: 20 Copynumber: 3.9 Consensus size: 20
669859 TTTTACCCAG
* *
669869 ATGTTTCGATATATTCTTCA
1 ATGTATCGATACATTCTTCA
* *
669889 ATGTATCGATACATAT-ATGA
1 ATGTATCGATACAT-TCTTCA
669909 ATGTATCGATACATTCTTCA
1 ATGTATCGATACATTCTTCA
669929 ATGTATCGATACATTCT
1 ATGTATCGATACATTCT
669946 GTCTTTTTAC
Statistics
Matches: 49, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
19 1 0.02
20 47 0.96
21 1 0.02
ACGTcount: A:0.31, C:0.16, G:0.12, T:0.42
Consensus pattern (20 bp):
ATGTATCGATACATTCTTCA
Found at i:669922 original size:91 final size:91
Alignment explanation
Indices: 669797--669970 Score: 285
Period size: 91 Copynumber: 1.9 Consensus size: 91
669787 TGCATTGAAA
* * *
669797 AATGTATCGTTACATGTATGAAAGTATCAATACATTCTTCAATGTGTCGATACATTATGTCTTTT
1 AATGTATCGATACATATATGAAAGTATCAATACATTCTTCAATGTATCGATACATTATGTCTTTT
*
669862 TACCCAGATGTTTCGATATATTCTTC
66 TACCCAGATGTATCGATATATTCTTC
* * *
669888 AATGTATCGATACATATATGAATGTATCGATACATTCTTCAATGTATCGATACATTCTGTCTTTT
1 AATGTATCGATACATATATGAAAGTATCAATACATTCTTCAATGTATCGATACATTATGTCTTTT
669953 TACCCAGATGTATCGATA
66 TACCCAGATGTATCGATA
669971 CATCTAGTTA
Statistics
Matches: 76, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
91 76 1.00
ACGTcount: A:0.30, C:0.17, G:0.13, T:0.40
Consensus pattern (91 bp):
AATGTATCGATACATATATGAAAGTATCAATACATTCTTCAATGTATCGATACATTATGTCTTTT
TACCCAGATGTATCGATATATTCTTC
Found at i:678689 original size:23 final size:23
Alignment explanation
Indices: 678657--678703 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
678647 TCAAGGCTAG
*
678657 TTCTTTAACACCTACACCAATAT
1 TTCTTCAACACCTACACCAATAT
678680 TTCTTCAACACCTACACCAATAT
1 TTCTTCAACACCTACACCAATAT
678703 T
1 T
678704 AGTCATGGAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.34, C:0.32, G:0.00, T:0.34
Consensus pattern (23 bp):
TTCTTCAACACCTACACCAATAT
Found at i:683948 original size:10 final size:10
Alignment explanation
Indices: 683933--684009 Score: 50
Period size: 10 Copynumber: 7.6 Consensus size: 10
683923 TCCTTCGTAC
683933 AAAAAAAACA
1 AAAAAAAACA
683943 AAAAAAAAC-
1 AAAAAAAACA
* *
683952 TAAAAAAATA
1 AAAAAAAACA
* *
683962 GAAAAAACCA
1 AAAAAAAACA
*
683972 AAAGCAAAA-A
1 AAA-AAAAACA
* *
683982 AATAAAAATA
1 AAAAAAAACA
683992 AATAAACAAACA
1 AA-AAA-AAACA
684004 AAAAAA
1 AAAAAA
684010 GGGTCTAGAT
Statistics
Matches: 50, Mismatches: 12, Indels: 10
0.69 0.17 0.14
Matches are distributed among these distances:
9 11 0.22
10 25 0.50
11 8 0.16
12 6 0.12
ACGTcount: A:0.82, C:0.09, G:0.03, T:0.06
Consensus pattern (10 bp):
AAAAAAAACA
Found at i:685286 original size:28 final size:28
Alignment explanation
Indices: 685255--685651 Score: 402
Period size: 28 Copynumber: 13.8 Consensus size: 28
685245 GTTCATCTCA
* * *
685255 TCAAAGCCCATAGGTCAATGGCATCCTT
1 TCAAAGCCCACAAGTCAGTGGCATCCTT
685283 TCAAAGCCCACAAGTCAGTGGCAT-CTAT
1 TCAAAGCCCACAAGTCAGTGGCATCCT-T
* * * *
685311 TCAAAGCCCATAAGTTAGTGACACCCTT
1 TCAAAGCCCACAAGTCAGTGGCATCCTT
*
685339 TCAAAGCCCACAAGTTAGTGGCATCCTT
1 TCAAAGCCCACAAGTCAGTGGCATCCTT
* * *
685367 TCAAAGACCACAAGTTAATGGCATCCTT
1 TCAAAGCCCACAAGTCAGTGGCATCCTT
* * * *
685395 TCAAAGCCCATAAGTCAGTGACACCCAT
1 TCAAAGCCCACAAGTCAGTGGCATCCTT
*
685423 TCAAAGCCCACAAGTCAGTGGTATACCTTT
1 TCAAAGCCCACAAGTCAGTGGCAT-CC-TT
* *
685453 TCAAAGCCCATACAAATCAGTGGCACCCTT
1 TCAAAGCCC--ACAAGTCAGTGGCATCCTT
* * *
685483 CCAAAGCCCACAAGTCAGGGGCACCCTT
1 TCAAAGCCCACAAGTCAGTGGCATCCTT
* ** *
685511 TTAAAGCCCACAAGTCAGTGATACCCTT
1 TCAAAGCCCACAAGTCAGTGGCATCCTT
*
685539 TCAAAGCCCACAAGTCGGTGGCATCCTT
1 TCAAAGCCCACAAGTCAGTGGCATCCTT
*
685567 TCAAAGCCCACAAGTCAGTGACA-CGCTT
1 TCAAAGCCCACAAGTCAGTGGCATC-CTT
* *
685595 TCAAAGCCCACACAAGTCGGTGGCAACTCTTT
1 TCAAAG-CC-CACAAGTCAGTGGC-A-TCCTT
*
685627 TCAAAGTCCACACAAGTTAGTGGCA
1 TCAAAG-CC-CACAAGTCAGTGGCA
685652 CTTTTTTTTT
Statistics
Matches: 309, Mismatches: 48, Indels: 21
0.82 0.13 0.06
Matches are distributed among these distances:
27 3 0.01
28 228 0.74
29 6 0.02
30 32 0.10
31 4 0.01
32 35 0.11
33 1 0.00
ACGTcount: A:0.31, C:0.30, G:0.17, T:0.22
Consensus pattern (28 bp):
TCAAAGCCCACAAGTCAGTGGCATCCTT
Found at i:685398 original size:84 final size:84
Alignment explanation
Indices: 685255--685651 Score: 454
Period size: 84 Copynumber: 4.6 Consensus size: 84
685245 GTTCATCTCA
* * *
685255 TCAAAGCCCATAGGTCAATGGCATCCTTTCAAAGCCCACAAGTCAGTGGCAT-CTATTCAAAGCC
1 TCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCCT-TTCAAAGCC
* *
685319 CATAAGTTAGTGACACCCTT
65 CACAAGTCAGTGACACCCTT
* * * *
685339 TCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGACCACAAGTTAATGGCATCCTTTCAAAGCCC
1 TCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCC
* *
685404 ATAAGTCAGTGACACCCAT
66 ACAAGTCAGTGACACCCTT
* * * *
685423 TCAAAGCCCACAAGTCAGTGGTATACCTTTTCAAAGCCCATACAAATCAGTGGCACCCTTCCAAA
1 TCAAAGCCCACAAGTCAGTGGCAT-CC-TTTCAAAGCCC--ACAAGTCAGTGGCATCCTTTCAAA
* *
685488 GCCCACAAGTCAGGGGCACCCTT
62 GCCCACAAGTCAGTGACACCCTT
* ** * *
685511 TTAAAGCCCACAAGTCAGTGATACCCTTTCAAAGCCCACAAGTCGGTGGCATCCTTTCAAAGCCC
1 TCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCC
*
685576 ACAAGTCAGTGACACGCTT
66 ACAAGTCAGTGACACCCTT
* * *
685595 TCAAAGCCCACACAAGTCGGTGGCAACTCTTTTCAAAGTCCACACAAGTTAGTGGCA
1 TCAAAG-CC-CACAAGTCAGTGGC-A-TCCTTTCAAAG-CC-CACAAGTCAGTGGCA
685652 CTTTTTTTTT
Statistics
Matches: 263, Mismatches: 39, Indels: 16
0.83 0.12 0.05
Matches are distributed among these distances:
84 139 0.53
85 6 0.02
86 32 0.12
87 3 0.01
88 68 0.26
89 2 0.01
90 13 0.05
ACGTcount: A:0.31, C:0.30, G:0.17, T:0.22
Consensus pattern (84 bp):
TCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCC
ACAAGTCAGTGACACCCTT
Found at i:686563 original size:20 final size:20
Alignment explanation
Indices: 686540--686577 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
686530 TACATGTATG
686540 AATGTATCGATACATTCTTT
1 AATGTATCGATACATTCTTT
*
686560 AATGTGTCGATACATTCT
1 AATGTATCGATACATTCT
686578 GTCTTTTTAC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.29, C:0.16, G:0.13, T:0.42
Consensus pattern (20 bp):
AATGTATCGATACATTCTTT
Found at i:686617 original size:20 final size:20
Alignment explanation
Indices: 686592--686668 Score: 100
Period size: 20 Copynumber: 3.9 Consensus size: 20
686582 TTTTACCCAG
*
686592 ATGTATTGATACATTTTTAA
1 ATGTATCGATACATTTTTAA
* * *
686612 ATGTATCGATACATGTATGA
1 ATGTATCGATACATTTTTAA
* *
686632 ATGTATCGATACATTCTTCA
1 ATGTATCGATACATTTTTAA
686652 ATGTATCGATACATTTT
1 ATGTATCGATACATTTT
686669 GTTTTTTTAC
Statistics
Matches: 48, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.32, C:0.12, G:0.13, T:0.43
Consensus pattern (20 bp):
ATGTATCGATACATTTTTAA
Found at i:686635 original size:71 final size:71
Alignment explanation
Indices: 686510--686648 Score: 190
Period size: 71 Copynumber: 2.0 Consensus size: 71
686500 AAAAGTCACA
* * * *
686510 TTTTTACCCAGAAGTATCGATACATGTATGAATGTATCGATACATTCTTTAATGTGTCGATACAT
1 TTTTTACCCAGAAGTATCGATACATGTATAAATGTATCGATACATTCATGAATGTATCGATACAT
686575 TCTGTC
66 TCTGTC
* * * *
686581 TTTTTACCCAGATGTATTGATACATTTTTAAATGTATCGATACATGT-ATGAATGTATCGATACA
1 TTTTTACCCAGAAGTATCGATACATGTATAAATGTATCGATACAT-TCATGAATGTATCGATACA
686645 TTCT
65 TTCT
686649 TCAATGTATC
Statistics
Matches: 59, Mismatches: 8, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
71 58 0.98
72 1 0.02
ACGTcount: A:0.29, C:0.15, G:0.14, T:0.41
Consensus pattern (71 bp):
TTTTTACCCAGAAGTATCGATACATGTATAAATGTATCGATACATTCATGAATGTATCGATACAT
TCTGTC
Found at i:686678 original size:91 final size:91
Alignment explanation
Indices: 686523--686716 Score: 309
Period size: 91 Copynumber: 2.1 Consensus size: 91
686513 TTACCCAGAA
* *
686523 GTATCGATACATGTATGAATGTATCGATACATTCTTTAATGTGTCGATACATTCTGTCTTTTTAC
1 GTATCGATACATGTATGAATGTATCGATACATTCTTCAATGTATCGATACATTCTGTCTTTTTAC
* **
686588 CCAGATGTATTGATACATT-TTTAAAT
66 CCAGATGTATCGATACATTGAAT-AAT
* *
686614 GTATCGATACATGTATGAATGTATCGATACATTCTTCAATGTATCGATACATTTTGTTTTTTTAC
1 GTATCGATACATGTATGAATGTATCGATACATTCTTCAATGTATCGATACATTCTGTCTTTTTAC
686679 CCAGATGTATCGATACATTGAATAAT
66 CCAGATGTATCGATACATTGAATAAT
686705 GTATCGATACAT
1 GTATCGATACAT
686717 CTAGTTAAAA
Statistics
Matches: 95, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
91 94 0.99
92 1 0.01
ACGTcount: A:0.30, C:0.14, G:0.14, T:0.41
Consensus pattern (91 bp):
GTATCGATACATGTATGAATGTATCGATACATTCTTCAATGTATCGATACATTCTGTCTTTTTAC
CCAGATGTATCGATACATTGAATAAT
Found at i:692633 original size:155 final size:154
Alignment explanation
Indices: 692336--693024 Score: 638
Period size: 155 Copynumber: 4.4 Consensus size: 154
692326 AAGTTTTAAT
* * * ** * * *
692336 AAAATTACAAAAATACC-CTTAGAGGATACCATT-GATGTAGGAGTACCCAATACCCCTAAAAGA
1 AAAATTACAAAAATACCTCTAAG-GGATA-CTTTCGACGTAAAAGTACTCGATACCCCTAAAGGA
* * * *
692399 CTTAAAAAGGATTATGAATGGGATGAACCTATCCTAAAGATCTACCTTTGACATAAATGCAGACC
64 CTTAAAAAGGA-TATAAATGGGATGAACCTATCCTAAATATCTACCTTCGACATAAAAGCAGACC
* * *
692464 CAGTGACAACCTAGGACTTGGTTCTAG
128 CGGTGACAACCTAGGACTCGATTCTAG
** * * *
692491 AAAATTATGAAAATGCCTCTAAGGAATACTTTCGACGTAAAAGTACTTGATACCCCTAAAGGACT
1 AAAATTACAAAAATACCTCTAAGGGATACTTTCGACGTAAAAGTACTCGATACCCCTAAAGGACT
* * ** *
692556 TAAAAAGGATCATAAATGGGATGATCCTATCCTAAATATCTACCTTCAACATAAAAGTGGACTCG
66 TAAAAAGGAT-ATAAATGGGATGAACCTATCCTAAATATCTACCTTCGACATAAAAGCAGACCCG
** * * *
692621 GTGATGATCTAGGAGTTGATTCT-G
130 GTGACAACCTAGGACTCGATTCTAG
* * * * *
692645 AAAAATTACAAAAATGCCTCT-AGGTGATACCTTCGATGTAAAAGTACCCAATACCCCTAAAGGA
1 -AAAATTACAAAAATACCTCTAAGG-GATACTTTCGACGTAAAAGTACTCGATACCCCTAAAGGA
* * * * * *
692709 CTTGAAAAGGGT-TAAGA-GATGATGAACCTATCCTAAATATTTACCTTTGGCATAAAAGCAGAC
64 CTTAAAAAGGATATAA-ATG-GGATGAACCTATCCTAAATATCTACCTTCGACATAAAAGCAGAC
* * * *
692772 CTGGTGATAACCTAGGCCTCAATTCTGAG
127 CCGGTGACAACCTAGGACTCGATTCT-AG
* * * * * * * * *
692801 AATATTATAAAAATACCCCTAAAGGATACTTTCGACGTAAAAGTACTTGGTGCCCTTAAAAGACT
1 AAAATTACAAAAATACCTCTAAGGGATACTTTCGACGTAAAAGTACTCGATACCCCTAAAGGACT
* * *
692866 TAAAAAGGATAATAAATGAGATGAACCTATCCTAAATATCTACCTTCGGCATAAAAG-TGAACCC
66 TAAAAAGGAT-ATAAATGGGATGAACCTATCCTAAATATCTACCTTCGACATAAAAGCAG-ACCC
* * *
692930 GATGACAACCTAAGACTCGATTCTAA
129 GGTGACAACCTAGGACTCGATTCTAG
* * * *
692956 AAAATTACGAAAATATCGCTAGGGGATAGCTTT-GACGTAAAAGTACTCGATACCCCTAAAGGAC
1 AAAATTACAAAAATACCTCTAAGGGATA-CTTTCGACGTAAAAGTACTCGATACCCCTAAAGGAC
693020 TTAAA
65 TTAAA
693025 GGATTTATAG
Statistics
Matches: 426, Mismatches: 93, Indels: 30
0.78 0.17 0.05
Matches are distributed among these distances:
153 4 0.01
154 63 0.15
155 285 0.67
156 70 0.16
157 4 0.01
ACGTcount: A:0.39, C:0.19, G:0.17, T:0.25
Consensus pattern (154 bp):
AAAATTACAAAAATACCTCTAAGGGATACTTTCGACGTAAAAGTACTCGATACCCCTAAAGGACT
TAAAAAGGATATAAATGGGATGAACCTATCCTAAATATCTACCTTCGACATAAAAGCAGACCCGG
TGACAACCTAGGACTCGATTCTAG
Found at i:692898 original size:310 final size:306
Alignment explanation
Indices: 692336--693024 Score: 824
Period size: 310 Copynumber: 2.2 Consensus size: 306
692326 AAGTTTTAAT
** *
692336 AAAATTACAAAAATACCCTTAGAGGATACCATTGATGTAGGAGTACCCAATACCCCTAAAAGACT
1 AAAATTACAAAAATACCC-TAG-GGATACC-TTGATGTAAAAGTACCCAATACCCCTAAAGGACT
* *
692401 TAAAAAGGATTATGAATGGGATGAACCTATCCTAAAGATCTACCTTTGACATAAATGCAGACCCA
63 TAAAAAGGATTAAGAAT-GGATGAACCTATCCTAAAGATCTACCTTTGACATAAAAGCAGACCCA
*** * * *
692466 GTGACAACCTAGGACTTGGTTCTAGAAAATTATGAAAATGCCTCTAAGGAATACTTTCGACGTAA
127 GTGACAACCTAGGACTCAATTCTAGAAAATTATAAAAATACCCCTAAGGAATACTTTCGACGTAA
* * * *
692531 AAGTACTTGATACCCCTAAAGGACTTAAAAAGGATCATAAATGGGATGATCCTATCCTAAATATC
192 AAGTACTTGATACCCCTAAAAGACTTAAAAAGGATAATAAATGAGATGAACCTATCCTAAATATC
* * * ** * * * * *
692596 TACCTTCAACATAAAAGTGGACTCGGTGATGATCTAGGAGTTGATTCTGA
257 TACCTTCAACATAAAAGTGAACCCGATGACAACCTAAGACTCGATTCTAA
*
692646 AAAATTACAAAAATGCCTCTAGGTGATACCTTCGATGTAAAAGTACCCAATACCCCTAAAGGACT
1 AAAATTACAAAAATACC-CTAGG-GATACCTT-GATGTAAAAGTACCCAATACCCCTAAAGGACT
* * * * * **
692711 TGAAAAGGGTTAAGAGAT-GATGAACCTATCCTAAATATTTACCTTTGGCATAAAAGCAGACCTG
63 TAAAAAGGATTAAGA-ATGGATGAACCTATCCTAAAGATCTACCTTTGACATAAAAGCAGACCCA
* * *
692775 GTGATAACCTAGGCCTCAATTCTGAGAATATTATAAAAATACCCCTAAAGG-ATACTTTCGACGT
127 GTGACAACCTAGGACTCAATTCT-AGAAAATTATAAAAATACCCCT-AAGGAATACTTTCGACGT
* * *
692839 AAAAGTACTTGGTGCCCTTAAAAGACTTAAAAAGGATAATAAATGAGATGAACCTATCCTAAATA
190 AAAAGTACTTGATACCCCTAAAAGACTTAAAAAGGATAATAAATGAGATGAACCTATCCTAAATA
**
692904 TCTACCTTCGGCATAAAAGTGAACCCGATGACAACCTAAGACTCGATTCTAA
255 TCTACCTTCAACATAAAAGTGAACCCGATGACAACCTAAGACTCGATTCTAA
* * * * * *
692956 AAAATTACGAAAATATCGCTAGGGGATAGCTTTGACGTAAAAGTACTCGATACCCCTAAAGGACT
1 AAAATTACAAAAATA-CCCTA-GGGATA-CCTTGATGTAAAAGTACCCAATACCCCTAAAGGACT
693021 TAAA
63 TAAA
693025 GGATTTATAG
Statistics
Matches: 321, Mismatches: 49, Indels: 18
0.83 0.13 0.05
Matches are distributed among these distances:
309 61 0.19
310 247 0.77
311 13 0.04
ACGTcount: A:0.39, C:0.19, G:0.17, T:0.25
Consensus pattern (306 bp):
AAAATTACAAAAATACCCTAGGGATACCTTGATGTAAAAGTACCCAATACCCCTAAAGGACTTAA
AAAGGATTAAGAATGGATGAACCTATCCTAAAGATCTACCTTTGACATAAAAGCAGACCCAGTGA
CAACCTAGGACTCAATTCTAGAAAATTATAAAAATACCCCTAAGGAATACTTTCGACGTAAAAGT
ACTTGATACCCCTAAAAGACTTAAAAAGGATAATAAATGAGATGAACCTATCCTAAATATCTACC
TTCAACATAAAAGTGAACCCGATGACAACCTAAGACTCGATTCTAA
Found at i:693406 original size:149 final size:154
Alignment explanation
Indices: 693221--693676 Score: 591
Period size: 149 Copynumber: 2.9 Consensus size: 154
693211 ATAAAAGATT
* *
693221 AAAAGGATGATTAAAATTTATTTTGGTTATGAAAGTGTTAATTTAGTTATTTATTTATTTAATTT
1 AAAAAGATGATTAAAATTTATTTTGGTTATGAAAGTGTTAATTTAATTATTTATTTATTTAATTT
*
693286 TAAAAAATATCATTTTGTACCTTAATAGAAGCCTGAAAAGATACGAAAAGTTTTTGGAAATCTCT
66 TAAAAAATATCATTTTGTACCTTAATAGAAGCCTGAAAAGATACGAAAAGTTTTTGAAAATCTCT
*
693351 TATACCCTT-A-C-AG-ATAT-TA
131 TATACCCTTAACCAAGAATATAAA
* *
693370 AAAAAGATGATTAGAATTTATTTTGGATATGAAAGTGTTAATTTAATTATTTATTTATTTAATTT
1 AAAAAGATGATTAAAATTTATTTTGGTTATGAAAGTGTTAATTTAATTATTTATTTATTTAATTT
* * * *
693435 CAAAAAATATCATTTCGTACCTTAATGGAAGCCCGAAAAGATACGAAAAGTTTTTGAAAATCTCT
66 TAAAAAATATCATTTTGTACCTTAATAGAAGCCTGAAAAGATACGAAAAGTTTTTGAAAATCTCT
*
693500 TAAACCCTTAAGGATGCCCATAGAAATATAAAAGATTA
131 TATACCCTT-A--A---CCA-AG-AATAT---A-A--A
*
693538 AAAAAGATTGATTAAAATTTATTTTGGTTATCAAAGTGTTAATTTAATTATTTATTTATTTAATT
1 AAAAAGA-TGATTAAAATTTATTTTGGTTATGAAAGTGTTAATTTAATTATTTATTTATTTAATT
*
693603 TTAAAAAATATCATTTTGTGCCTTAATAGAAG-CTCGAAAAGATACGAAAAGTTTTTTGAAAATC
65 TTAAAAAATATCATTTTGTACCTTAATAGAAGCCT-GAAAAGATACGAAAAG-TTTTTGAAAATC
*
693667 TTTTATACCC
128 TCTTATACCC
693677 CTACGGATGC
Statistics
Matches: 264, Mismatches: 21, Indels: 23
0.86 0.07 0.07
Matches are distributed among these distances:
149 129 0.49
153 1 0.00
157 1 0.00
159 2 0.01
161 4 0.02
168 9 0.03
169 98 0.37
170 20 0.08
ACGTcount: A:0.40, C:0.09, G:0.12, T:0.39
Consensus pattern (154 bp):
AAAAAGATGATTAAAATTTATTTTGGTTATGAAAGTGTTAATTTAATTATTTATTTATTTAATTT
TAAAAAATATCATTTTGTACCTTAATAGAAGCCTGAAAAGATACGAAAAGTTTTTGAAAATCTCT
TATACCCTTAACCAAGAATATAAA
Found at i:695526 original size:160 final size:162
Alignment explanation
Indices: 695309--696034 Score: 801
Period size: 160 Copynumber: 4.5 Consensus size: 162
695299 CGGAGAAAGG
* * ** *
695309 AAAATTTCAAGG-AAAAATTCAAAATTCATGGAAATGAATGAATTTAAGAAAACTAAATTAATTT
1 AAAATTTCAAGGAAAAAATTCAAAATTTATGAAAATGAATGAATTTTTGAAAACTAAATTAATAT
*
695373 AAAATAAATAATAATATTTGACAAATTTTAAAAATTAAAAACCAAGAAAAATCCTCCCAAAAAAA
66 AAAATAAATAATAATATTTGACGAATTTTAAAAATTAAAAACCAAGAAAAATCCTCCCAAAAAAA
*
695438 TTTATGGAGTAGAAAACTCCGTATTTTGAA-A
131 TTTACGGAGTAGAAAACTCCGTATTTTGAAGA
*
695469 AAAA-TTCAAGGAAAAAATT-AGAAAGTTATGAAAATGAATGAATTTTTGAAAACTAAATTAATA
1 AAAATTTCAAGGAAAAAATTCA-AAATTTATGAAAATGAATGAATTTTTGAAAACTAAATTAATA
*
695532 TAAAATAAATAATAATATTTGATGAATTTTAAAAATTAAAAACCAAGAAAAA---TCCCAAAAAA
65 TAAAATAAATAATAATATTTGACGAATTTTAAAAATTAAAAACCAAGAAAAATCCTCCCAAAAAA
* *
695594 ATTTTACAGAGTAGAAAACTCTG-ATTTTGGAAAAAGA
130 A-TTTACGGAGTAGAAAACTCCGTATTTT-G---AAGA
* * * * *
695631 AAAATTTTAA-GAAAAAATTCAACATTTATGGAAATGAATGAATTTTAG-AAACTGAATTAATAT
1 AAAATTTCAAGGAAAAAATTCAAAATTTATGAAAATGAATGAATTTTTGAAAACTAAATTAATAT
* * * *
695694 GAAATAAATAATAATATTTGATGAATTTTAAAAATTAAAAACTAAGAAAAATTCTCCC-AAAAAA
66 AAAATAAATAATAATATTTGACGAATTTTAAAAATTAAAAACCAAGAAAAATCCTCCCAAAAAAA
* **
695758 TTTACGGAGTAGAAATCTCCGTATTTCAAAAAAAGA
131 TTTACGGAGTAGAAAACTCCGTATTT----TGAAGA
* * *
695794 AAAATTTCAAGGAAAAAATTTAAAATTTATGAAAATAAATGAATTTTTGAAAA-AAGAATTAATA
1 AAAATTTCAAGGAAAAAATTCAAAATTTATGAAAATGAATGAATTTTTGAAAACTA-AATTAATA
* * *
695858 TAAAATAAATAATAATATTTAGTC-AATTTTAAGAATT--AAA--AAGAAAAATCACT--TAAAA
65 TAAAATAAATAATAATATTT-GACGAATTTTAAAAATTAAAAACCAAGAAAAATC-CTCCCAAAA
* * * *
695916 AAATTTATGGAGTAAAAAACCCCATA-TTTGAA-A
128 AAATTTACGGAGTAGAAAACTCCGTATTTTGAAGA
* * * * *
695949 AAAATTTCAAGGAAAAAATTCAAAAATTTATGAAAATGAATAAATTTTTTAGAACTGATTTAATA
1 AAAATTTCAAGGAAAAAATTC-AAAATTTATGAAAATGAATGAATTTTTGAAAACTAAATTAATA
** * *
696014 GGAATTAAATGATAATATTTG
65 TAAAATAAATAATAATATTTG
696035 TGAAATTTTG
Statistics
Matches: 483, Mismatches: 57, Indels: 57
0.81 0.10 0.10
Matches are distributed among these distances:
155 22 0.05
156 53 0.11
157 16 0.03
158 19 0.04
159 8 0.02
160 99 0.20
161 98 0.20
162 57 0.12
163 31 0.06
164 37 0.08
165 42 0.09
166 1 0.00
ACGTcount: A:0.53, C:0.07, G:0.10, T:0.30
Consensus pattern (162 bp):
AAAATTTCAAGGAAAAAATTCAAAATTTATGAAAATGAATGAATTTTTGAAAACTAAATTAATAT
AAAATAAATAATAATATTTGACGAATTTTAAAAATTAAAAACCAAGAAAAATCCTCCCAAAAAAA
TTTACGGAGTAGAAAACTCCGTATTTTGAAGA
Found at i:695898 original size:326 final size:323
Alignment explanation
Indices: 695282--695899 Score: 881
Period size: 326 Copynumber: 1.9 Consensus size: 323
695272 ATTTATGGAA
* * *
695282 TAGAAAACTAGATTTTTCGGAGAAAGGAAAATTTCAAGGAAAAATTCAAAATTCATGGAAATGAA
1 TAGAAAACTAGATTTTTCGGAAAAAGAAAAATTTCAAGAAAAAATTCAAAATTCATGGAAATGAA
*
695347 TGAATTTAAGAAAACTAAATTAATTTAAAATAAATAATAATATTTGACAAATTTTAAAAATTAAA
66 TGAATTTAAGAAAACTAAATTAATATAAAATAAATAATAATATTTGACAAATTTTAAAAATTAAA
* **
695412 AACCAAGAAAAATCCTCCCAAAAAAATTTATGGAGTAGAAAACTCCGTATTTTGAAAAAAATTCA
131 AACCAAGAAAAATCCTCCCAAAAAAATTTACGGAGTAGAAAACTCCGTATTTAAAAAAAAATTCA
* *
695477 AGGAAAAAATTAGAAAGTTATGAAAATGAATGAATTTTTGAAAACTAAATTAATATAAAATAAAT
196 AGGAAAAAATTAGAAAGTTATGAAAATAAATGAATTTTTGAAAACAAAATTAATATAAAATAAAT
*
695542 AATAATATTTGATGAATTTTAAAAATTAAAAACCAAGAAAAATCCCAAAAAAATTTTACAGAG
261 AATAATATTTGATCAATTTTAAAAATTAAAAACCAAGAAAAATCCCAAAAAAATTTTACAGAG
* * * *
695605 TAGAAAACTCTGA-TTTT-GGAAAAAGAAAAATTTTAAGAAAAAATTCAACATTTATGGAAATGA
1 TAGAAAACT-AGATTTTTCGGAAAAAGAAAAATTTCAAGAAAAAATTCAAAATTCATGGAAATGA
* * * **
695668 ATGAATTTTAG-AAACTGAATTAATATGAAATAAATAATAATATTTGATGAATTTTAAAAATTAA
65 ATGAATTTAAGAAAACTAAATTAATATAAAATAAATAATAATATTTGACAAATTTTAAAAATTAA
* * *
695732 AAACTAAGAAAAATTCTCCC-AAAAAATTTACGGAGTAGAAATCTCCGTATTTCAAAAAAAGAAA
130 AAACCAAGAAAAATCCTCCCAAAAAAATTTACGGAGTAGAAAACTCCGTATTT----AAAA-AAA
*
695796 AATTTCAAGGAAAAAATTTA-AAATTTATGAAAATAAATGAATTTTTGAAAA-AAGAATTAATAT
190 AA-TTCAAGGAAAAAA-TTAGAAAGTTATGAAAATAAATGAATTTTTGAAAACAA-AATTAATAT
*
695859 AAAATAAATAATAATATTT-AGTCAATTTTAAGAATTAAAAA
252 AAAATAAATAATAATATTTGA-TCAATTTTAAAAATTAAAAA
695900 GAAAAATCAC
Statistics
Matches: 261, Mismatches: 24, Indels: 17
0.86 0.08 0.06
Matches are distributed among these distances:
320 30 0.11
321 66 0.25
322 50 0.19
323 13 0.05
324 4 0.02
325 7 0.03
326 88 0.34
327 3 0.01
ACGTcount: A:0.53, C:0.07, G:0.11, T:0.29
Consensus pattern (323 bp):
TAGAAAACTAGATTTTTCGGAAAAAGAAAAATTTCAAGAAAAAATTCAAAATTCATGGAAATGAA
TGAATTTAAGAAAACTAAATTAATATAAAATAAATAATAATATTTGACAAATTTTAAAAATTAAA
AACCAAGAAAAATCCTCCCAAAAAAATTTACGGAGTAGAAAACTCCGTATTTAAAAAAAAATTCA
AGGAAAAAATTAGAAAGTTATGAAAATAAATGAATTTTTGAAAACAAAATTAATATAAAATAAAT
AATAATATTTGATCAATTTTAAAAATTAAAAACCAAGAAAAATCCCAAAAAAATTTTACAGAG
Found at i:695952 original size:161 final size:159
Alignment explanation
Indices: 695303--696034 Score: 744
Period size: 161 Copynumber: 4.6 Consensus size: 159
695293 ATTTTTCGGA
* * * **
695303 GAAAGGAAAATTTCAAGG-AAAAATTCAAAATTCATGGAAATGAATGAATTTAAGAAAACTAAAT
1 GAAAGAAAAATTTCAAGGAAAAAATTCAAAATTTATGAAAATGAATGAATTTTTGAAAACTAAAT
*
695367 TAATTTAAAATAAATAATAATATTTGA-CAAATTTTAAAAATTAAAAACCAAGAAAAATCCTCCC
66 TAATATAAAATAAATAATAATATTTGATC-AATTTTAAAAATT-AAAA-CAAGAAAAATCCT-CC
* * *
695431 AAAAAAATTTATGGAGTAGAAAACTCCGTATTTT
127 AAAAAAATTTACGGAGTAGAAAACCCCATA-TTT
*
695465 G-AA-AAAAA-TTCAAGGAAAAAATT-AGAAAGTTATGAAAATGAATGAATTTTTGAAAACTAAA
1 GAAAGAAAAATTTCAAGGAAAAAATTCA-AAATTTATGAAAATGAATGAATTTTTGAAAACTAAA
*
695526 TTAATATAAAATAAATAATAATATTTGATGAATTTTAAAAATTAAAAACCAAGAAAAAT-C-CCA
65 TTAATATAAAATAAATAATAATATTTGATCAATTTTAAAAATT-AAAA-CAAGAAAAATCCTCCA
* **
695589 AAAAAATTTTACAGAGTAGAAAACTCTGAT-TTT
128 AAAAAA-TTTACGGAGTAGAAAAC-CCCATATTT
* * * * *
695622 GGAAAAAGAAAAATTTTAA-GAAAAAATTCAACATTTATGGAAATGAATGAATTTTAG-AAACTG
1 -G--AAAGAAAAATTTCAAGGAAAAAATTCAAAATTTATGAAAATGAATGAATTTTTGAAAACTA
* * *
695685 AATTAATATGAAATAAATAATAATATTTGATGAATTTTAAAAATTAAAAACTAAGAAAAATTCTC
63 AATTAATATAAAATAAATAATAATATTTGATCAATTTTAAAAATT-AAAAC-AAGAAAAATCCTC
* * * *
695750 CCAAAAAATTTACGGAGTAGAAATCTCCGTATTT
126 CAAAAAAATTTACGGAGTAGAAAACCCCATATTT
* * * *
695784 CAAAAAAAGAAAAATTTCAAGGAAAAAATTTAAAATTTATGAAAATAAATGAATTTTTGAAAA-A
1 ----GAAAGAAAAATTTCAAGGAAAAAATTCAAAATTTATGAAAATGAATGAATTTTTGAAAACT
*
695848 AGAATTAATATAAAATAAATAATAATATTT-AGTCAATTTTAAGAATT-AAA-AAGAAAAATCAC
62 A-AATTAATATAAAATAAATAATAATATTTGA-TCAATTTTAAAAATTAAAACAAGAAAAATC-C
* * *
695910 T-TAAAAAAATTTATGGAGTAAAAAACCCCATATTT
124 TCCAAAAAAATTTACGGAGTAGAAAACCCCATATTT
* * * * *
695945 G-AA-AAAAATTTCAAGGAAAAAATTCAAAAATTTATGAAAATGAATAAATTTTTTAGAACTGAT
1 GAAAGAAAAATTTCAAGGAAAAAATTC-AAAATTTATGAAAATGAATGAATTTTTGAAAACTAAA
** * *
696008 TTAATAGGAATTAAATGATAATATTTG
65 TTAATATAAAATAAATAATAATATTTG
696035 TGAAATTTTG
Statistics
Matches: 481, Mismatches: 62, Indels: 59
0.80 0.10 0.10
Matches are distributed among these distances:
155 21 0.04
156 53 0.11
157 12 0.02
158 16 0.03
159 10 0.02
160 99 0.21
161 104 0.22
162 59 0.12
163 30 0.06
164 34 0.07
165 43 0.09
ACGTcount: A:0.53, C:0.07, G:0.10, T:0.30
Consensus pattern (159 bp):
GAAAGAAAAATTTCAAGGAAAAAATTCAAAATTTATGAAAATGAATGAATTTTTGAAAACTAAAT
TAATATAAAATAAATAATAATATTTGATCAATTTTAAAAATTAAAACAAGAAAAATCCTCCAAAA
AAATTTACGGAGTAGAAAACCCCATATTT
Found at i:699298 original size:33 final size:32
Alignment explanation
Indices: 699261--699323 Score: 90
Period size: 33 Copynumber: 1.9 Consensus size: 32
699251 CACCTTCAGA
*
699261 TGTATCGATACATAATGCACAGTATCGATACAT
1 TGTATCGATACATAA-CCACAGTATCGATACAT
* *
699294 TGTATCGATACATGACCACTGTATCGATAC
1 TGTATCGATACATAACCACAGTATCGATAC
699324 TTGCAAAGAT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
32 13 0.48
33 14 0.52
ACGTcount: A:0.33, C:0.21, G:0.16, T:0.30
Consensus pattern (32 bp):
TGTATCGATACATAACCACAGTATCGATACAT
Found at i:699300 original size:13 final size:13
Alignment explanation
Indices: 699282--699306 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
699272 ATAATGCACA
699282 GTATCGATACATT
1 GTATCGATACATT
699295 GTATCGATACAT
1 GTATCGATACAT
699307 GACCACTGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
GTATCGATACATT
Found at i:708522 original size:51 final size:52
Alignment explanation
Indices: 708464--708602 Score: 147
Period size: 52 Copynumber: 2.7 Consensus size: 52
708454 TTCTGGAAAA
* *
708464 AAATATATCGATAAATT-TATCATTGTATTGATAAATTATGGG-TTTTGACCC
1 AAATATATCGATAAATTCT-TCATTGTATCGATAAATTATGGGTTTTTAACCC
* * * * *
708515 AAATATATCAATACATTCTTTATTGTATCGATACATTCTGGGTTTTTAACCC
1 AAATATATCGATAAATTCTTCATTGTATCGATAAATTATGGGTTTTTAACCC
* * * * *
708567 AAATGTATCGATACATTCTTTAATGTATCAATAAAT
1 AAATATATCGATAAATTCTTCATTGTATCGATAAAT
708603 GCATGCAAAT
Statistics
Matches: 74, Mismatches: 12, Indels: 3
0.83 0.13 0.03
Matches are distributed among these distances:
51 34 0.46
52 40 0.54
ACGTcount: A:0.35, C:0.13, G:0.11, T:0.41
Consensus pattern (52 bp):
AAATATATCGATAAATTCTTCATTGTATCGATAAATTATGGGTTTTTAACCC
Found at i:708583 original size:52 final size:51
Alignment explanation
Indices: 708485--708602 Score: 155
Period size: 52 Copynumber: 2.3 Consensus size: 51
708475 TAAATTTATC
* *
708485 ATTGTATTGATAAATTATGGGTTTTGACCCAAATATATCAATACATTCTTT
1 ATTGTATCGATAAATTATGGGTTTTAACCCAAATATATCAATACATTCTTT
* * * *
708536 ATTGTATCGATACATTCTGGGTTTTTAACCCAAATGTATCGATACATTCTTT
1 ATTGTATCGATAAATTATGGG-TTTTAACCCAAATATATCAATACATTCTTT
* *
708588 AATGTATCAATAAAT
1 ATTGTATCGATAAAT
708603 GCATGCAAAT
Statistics
Matches: 57, Mismatches: 9, Indels: 1
0.85 0.13 0.01
Matches are distributed among these distances:
51 18 0.32
52 39 0.68
ACGTcount: A:0.33, C:0.14, G:0.12, T:0.42
Consensus pattern (51 bp):
ATTGTATCGATAAATTATGGGTTTTAACCCAAATATATCAATACATTCTTT
Found at i:709500 original size:20 final size:21
Alignment explanation
Indices: 709475--709514 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
709465 TCTAAACAAC
709475 CCATGTT-CATGCATTTTAAG
1 CCATGTTCCATGCATTTTAAG
709495 CCATGTTCCATGCATTTTAA
1 CCATGTTCCATGCATTTTAA
709515 CATGTCCAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 7 0.37
21 12 0.63
ACGTcount: A:0.25, C:0.23, G:0.12, T:0.40
Consensus pattern (21 bp):
CCATGTTCCATGCATTTTAAG
Found at i:712281 original size:51 final size:51
Alignment explanation
Indices: 712224--712336 Score: 127
Period size: 51 Copynumber: 2.2 Consensus size: 51
712214 ACAATGGGGC
* * * *
712224 TAGAGTATCCCCGATTATGGAAAATCGGTGTTTTGGAAATAAAATCAGAGT
1 TAGAGTATCCCCGATTATGAAAAATCGATGTTTTAGAAATAAAACCAGAGT
* * * ** * *
712275 TGGAGTATCCTCGATTGTGAAAAATTTATGTTTTAGAAATAAAACCGGGGT
1 TAGAGTATCCCCGATTATGAAAAATCGATGTTTTAGAAATAAAACCAGAGT
712326 TAGAGTATCCC
1 TAGAGTATCCC
712337 TTGGAAATAA
Statistics
Matches: 49, Mismatches: 13, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
51 49 1.00
ACGTcount: A:0.34, C:0.12, G:0.23, T:0.31
Consensus pattern (51 bp):
TAGAGTATCCCCGATTATGAAAAATCGATGTTTTAGAAATAAAACCAGAGT
Found at i:712448 original size:79 final size:79
Alignment explanation
Indices: 712273--712492 Score: 268
Period size: 79 Copynumber: 2.8 Consensus size: 79
712263 TAAAATCAGA
** * *
712273 GTTGGAGTAT-CCTCGATTGTGAAAAATTTATGTTTTAGAAATAAAACCGGGGTTAGAGTAT-CC
1 GTTGGAGTATCCCT-GATTGTGAAAAATCGATGTTTTAGAAATAAAACTGGGGTTGGAGTATCCC
* * *
712336 CTTGGAAATAATGGG
65 CTCGAAAATAACGGG
* * *
712351 GTTGGAGTATCCCCGATTGT-AGAAAATCGATATTTT-GAAAATAAAATTGGGGTTGGAGTATCC
1 GTTGGAGTATCCCTGATTGTGA-AAAATCGATGTTTTAG-AAATAAAACTGGGGTTGGAGTATCC
712414 CCTCGAAAATAACGGG
64 CCTCGAAAATAACGGG
* **
712430 GTTGGAGTATCCCTGATTGTGAAAAATCGATGCTTTAGAAATAAGGCTGGGGTTGGAGTATCC
1 GTTGGAGTATCCCTGATTGTGAAAAATCGATGTTTTAGAAATAAAACTGGGGTTGGAGTATCC
712493 TCAATTGTGA
Statistics
Matches: 120, Mismatches: 16, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
77 2 0.02
78 47 0.39
79 69 0.57
80 2 0.02
ACGTcount: A:0.31, C:0.12, G:0.27, T:0.30
Consensus pattern (79 bp):
GTTGGAGTATCCCTGATTGTGAAAAATCGATGTTTTAGAAATAAAACTGGGGTTGGAGTATCCCC
TCGAAAATAACGGG
Found at i:712500 original size:51 final size:51
Alignment explanation
Indices: 712426--712544 Score: 143
Period size: 51 Copynumber: 2.3 Consensus size: 51
712416 TCGAAAATAA
* * * *
712426 CGGGGTTGGAGTATCCCTGATTGTGAAAAATCGATGCTTTAGAAAT-AAGG
1 CGGGGTTGGAGTATCCCTAATTGTGAAAAATCAATACTTTAGAAATAAAGT
* * *
712476 CTGGGGTTGGAGTAT-CCTCAATTGTGAGAAATCAATATTTTGGAAATAAAGT
1 C-GGGGTTGGAGTATCCCT-AATTGTGAAAAATCAATACTTTAGAAATAAAGT
712528 CGGGGTTGGAGTATCCC
1 CGGGGTTGGAGTATCCC
712545 CTCAGAAATA
Statistics
Matches: 58, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
50 4 0.07
51 48 0.83
52 6 0.10
ACGTcount: A:0.29, C:0.13, G:0.29, T:0.29
Consensus pattern (51 bp):
CGGGGTTGGAGTATCCCTAATTGTGAAAAATCAATACTTTAGAAATAAAGT
Found at i:712630 original size:28 final size:28
Alignment explanation
Indices: 712528--712632 Score: 151
Period size: 28 Copynumber: 3.8 Consensus size: 28
712518 GAAATAAAGT
712528 CGGGGTTGGAGTATCCCCTC-A-GAAATAA
1 CGGGGTTGGAGTAT--CCTCGATGAAATAA
*
712556 CGGGGTTGGAGTATCCTCAATGAAATAA
1 CGGGGTTGGAGTATCCTCGATGAAATAA
712584 CGGGGTTGGAGTATCCTCGATGAAATAA
1 CGGGGTTGGAGTATCCTCGATGAAATAA
* *
712612 CGGGGTTCGAGCATCCTCGAT
1 CGGGGTTGGAGTATCCTCGAT
712633 TATGAAAAAT
Statistics
Matches: 72, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
26 4 0.06
27 1 0.01
28 67 0.93
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (28 bp):
CGGGGTTGGAGTATCCTCGATGAAATAA
Found at i:712659 original size:186 final size:185
Alignment explanation
Indices: 712399--712762 Score: 448
Period size: 186 Copynumber: 2.0 Consensus size: 185
712389 AAATAAAATT
* * *
712399 GGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCTGATTGTGAAAAATCGATGCT
1 GGGGTTGGAGTAT-CCCTCGAAAATAACGGGGTTCGAGCATCCCTGATTATGAAAAATCGATGCT
** ** * * * *
712464 TTAGAAAT-AAGGCTGGGGTTGGAGTATCCTCAATTGT-GAGAAATCAATATTTTGGAAATAAAG
65 TTAGAAATAAAATC-GAAGTTGAAGTATCCCCAATTGTGGA-AAATCAATATTTTAGAAATAAAA
* * *
712527 TCGGGGTTGGAGTATCCCCTCAGAAATAACGGGGTTGGAGTATCCTCAATGAAATAAC
128 CCGGGGTTAGAGTATCCCCTCAGAAATAACGGGGTTGGAGTATCCCCAATGAAATAAC
*
712585 GGGGTTGGAGTAT-CCTCGATGAAATAACGGGGTTCGAGCAT-CCTCGATTATGAAAAATTGATG
1 GGGGTTGGAGTATCCCTCGA--AAATAACGGGGTTCGAGCATCCCT-GATTATGAAAAATCGATG
* * * **
712648 TTTTGGAAATAAAATCGAAGTTGAAGTATCCCCGATTGTGGAAAATTGATATTTTAGAAATAAAA
63 CTTTAGAAATAAAATCGAAGTTGAAGTATCCCCAATTGTGGAAAATCAATATTTTAGAAATAAAA
**
712713 CCGGGGTTAGAGTATCCCCTTGGAAATAACGGGGTTGGAGTATCCCCAAT
128 CCGGGGTTAGAGTATCCCCTCAGAAATAACGGGGTTGGAGTATCCCCAAT
712763 TGTAAAAAAT
Statistics
Matches: 151, Mismatches: 22, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
184 6 0.04
185 3 0.02
186 137 0.91
187 5 0.03
ACGTcount: A:0.31, C:0.14, G:0.27, T:0.27
Consensus pattern (185 bp):
GGGGTTGGAGTATCCCTCGAAAATAACGGGGTTCGAGCATCCCTGATTATGAAAAATCGATGCTT
TAGAAATAAAATCGAAGTTGAAGTATCCCCAATTGTGGAAAATCAATATTTTAGAAATAAAACCG
GGGTTAGAGTATCCCCTCAGAAATAACGGGGTTGGAGTATCCCCAATGAAATAAC
Found at i:712727 original size:51 final size:50
Alignment explanation
Indices: 712612--712731 Score: 132
Period size: 51 Copynumber: 2.3 Consensus size: 50
712602 GATGAAATAA
* * * * *
712612 CGGGGTTCGAGCATCCTCGATTATGAAAAATTGATGTTTTGGAAATAAAAT
1 CGGGGTT-GAGTATCCCCGATTATGAAAAATTGATATTTTAGAAATAAAAC
** * *
712663 CGAAGTTGAAGTATCCCCGATTGTGGAAAATTGATATTTTAGAAATAAAAC
1 CGGGGTTG-AGTATCCCCGATTATGAAAAATTGATATTTTAGAAATAAAAC
712714 CGGGGTTAGAGTATCCCC
1 CGGGGTT-GAGTATCCCC
712732 TTGGAAATAA
Statistics
Matches: 56, Mismatches: 11, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
50 1 0.02
51 54 0.96
52 1 0.02
ACGTcount: A:0.33, C:0.14, G:0.23, T:0.29
Consensus pattern (50 bp):
CGGGGTTGAGTATCCCCGATTATGAAAAATTGATATTTTAGAAATAAAAC
Found at i:715210 original size:13 final size:13
Alignment explanation
Indices: 715192--715221 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
715182 GTAAACCCAA
715192 AATGTATCGATAC
1 AATGTATCGATAC
715205 AATGTATCGATAC
1 AATGTATCGATAC
715218 AATG
1 AATG
715222 AATAATGTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.40, C:0.13, G:0.17, T:0.30
Consensus pattern (13 bp):
AATGTATCGATAC
Found at i:715230 original size:20 final size:20
Alignment explanation
Indices: 715203--715259 Score: 87
Period size: 20 Copynumber: 2.9 Consensus size: 20
715193 ATGTATCGAT
715203 ACAATGTATCGATACAATGA
1 ACAATGTATCGATACAATGA
* * *
715223 ATAATGTATCAATATAATGA
1 ACAATGTATCGATACAATGA
715243 ACAATGTATCGATACAA
1 ACAATGTATCGATACAA
715260 ATTGTGAAAA
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.47, C:0.12, G:0.12, T:0.28
Consensus pattern (20 bp):
ACAATGTATCGATACAATGA
Found at i:716149 original size:29 final size:29
Alignment explanation
Indices: 716101--716158 Score: 89
Period size: 29 Copynumber: 2.0 Consensus size: 29
716091 TAAACCTTCA
* *
716101 AGATACAACTATTTTCAAAGATCACTATG
1 AGATACAACTATTATAAAAGATCACTATG
*
716130 AGATACAACTATTATAAAAGTTCACTATG
1 AGATACAACTATTATAAAAGATCACTATG
716159 TGGTATGAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.43, C:0.16, G:0.10, T:0.31
Consensus pattern (29 bp):
AGATACAACTATTATAAAAGATCACTATG
Found at i:720158 original size:13 final size:13
Alignment explanation
Indices: 720140--720165 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
720130 CAGGGTAGCT
720140 TTGTATCGATACA
1 TTGTATCGATACA
720153 TTGTATCGATACA
1 TTGTATCGATACA
720166 ACACTTATGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:721089 original size:13 final size:13
Alignment explanation
Indices: 721071--721095 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
721061 CAATTCTTCA
721071 TATATCGATACAT
1 TATATCGATACAT
721084 TATATCGATACA
1 TATATCGATACA
721096 ATGTGCCGTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.16, G:0.08, T:0.36
Consensus pattern (13 bp):
TATATCGATACAT
Found at i:721350 original size:21 final size:22
Alignment explanation
Indices: 721307--721356 Score: 68
Period size: 21 Copynumber: 2.3 Consensus size: 22
721297 ATTTTTACTT
*
721307 AAAAACATTTGATTTAAAGCTC
1 AAAAACATTTGATTCAAAGCTC
721329 AAAAACATTTG-TTCATAA-CTC
1 AAAAACATTTGATTCA-AAGCTC
721350 AAAAACA
1 AAAAACA
721357 CTTATTGAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
21 13 0.50
22 13 0.50
ACGTcount: A:0.50, C:0.16, G:0.06, T:0.28
Consensus pattern (22 bp):
AAAAACATTTGATTCAAAGCTC
Found at i:723131 original size:17 final size:18
Alignment explanation
Indices: 723109--723146 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
723099 TTGTCTCATC
723109 TTTTTCTTT-CTTTTCTT
1 TTTTTCTTTACTTTTCTT
723126 TTTTTCTTTACTTTTCTT
1 TTTTTCTTTACTTTTCTT
723144 TTT
1 TTT
723147 CTTTGTTATC
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 9 0.45
18 11 0.55
ACGTcount: A:0.03, C:0.16, G:0.00, T:0.82
Consensus pattern (18 bp):
TTTTTCTTTACTTTTCTT
Found at i:723133 original size:13 final size:14
Alignment explanation
Indices: 723110--723144 Score: 54
Period size: 13 Copynumber: 2.6 Consensus size: 14
723100 TGTCTCATCT
*
723110 TTTTCTTTCTTTTC
1 TTTTCTTTCTTTAC
723124 TTTT-TTTCTTTAC
1 TTTTCTTTCTTTAC
723137 TTTTCTTT
1 TTTTCTTT
723145 TTCTTTGTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
13 12 0.63
14 7 0.37
ACGTcount: A:0.03, C:0.17, G:0.00, T:0.80
Consensus pattern (14 bp):
TTTTCTTTCTTTAC
Found at i:724667 original size:15 final size:14
Alignment explanation
Indices: 724620--724667 Score: 51
Period size: 15 Copynumber: 3.2 Consensus size: 14
724610 AGAAAAAACT
*
724620 AAAGAGAAAAAAGA
1 AAAGAAAAAAAAGA
*
724634 CAAAGAAAAAAATAAA
1 -AAAGAAAAAAA-AGA
724650 AAAGAAAGAAAAAGA
1 AAAGAAA-AAAAAGA
724665 AAA
1 AAA
724668 ATAAGTTCTA
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
15 22 0.79
16 6 0.21
ACGTcount: A:0.81, C:0.02, G:0.15, T:0.02
Consensus pattern (14 bp):
AAAGAAAAAAAAGA
Found at i:725092 original size:58 final size:56
Alignment explanation
Indices: 724962--725340 Score: 305
Period size: 58 Copynumber: 6.6 Consensus size: 56
724952 ACCATTTTAC
* * **
724962 AATTTCATGCATTTTGGAGTCATTTAAGTCATTTTCTATGATTTAAAGACTATTATGT
1 AATTTCATGCATTTTAG-GTCATTTTAGTCATTTTC-ATGATTTAGGGACTATTATGT
** * *
725020 AATTTTGTGCATTTTAAGGTCATTTTAGTTATTTTCAATCATTTAGGGACTATTATGT
1 AATTTCATGCATTTT-AGGTCATTTTAGTCATTTTC-ATGATTTAGGGACTATTATGT
* ** * * * * * **
725078 AATTTCATGTATTTTAGCACCATTTTAGTTATTCTCCATGATCTAGGCACTATTTTAC
1 AATTTCATGCATTTTAG-GTCATTTTAGTCATT-TTCATGATTTAGGGACTATTATGT
* * * ** * *
725136 AATTTCATACATTTTGGAGTCAATTTAGTCATTTTCACAATTTAGGGACCATTATGC
1 AATTTCATGCATTTTAG-GTCATTTTAGTCATTTTCATGATTTAGGGACTATTATGT
* * * *
725193 AAATTCATGCATTTAAGGACATTTTAGTCATTTTTCATGATTTAGGTA-TATTATGT
1 AATTTCATGCATTTTAGGTCATTTTAGTCA-TTTTCATGATTTAGGGACTATTATGT
* * ** *
725249 AATTTCATGCATTTTAGGACCA--TTAGTTATTTTCCATGATTTAGTAACTATTATGA
1 AATTTCATGCATTTTAGG-TCATTTTAGTCATTTT-CATGATTTAGGGACTATTATGT
* * *
725305 AATTTCATGAATTTTAAGACAATTTTAGTCATTTTC
1 AATTTCATGCATTTTAGGTC-ATTTTAGTCATTTTC
725341 CTTGATAAAG
Statistics
Matches: 252, Mismatches: 59, Indels: 21
0.76 0.18 0.06
Matches are distributed among these distances:
54 4 0.02
55 18 0.07
56 57 0.23
57 48 0.19
58 122 0.48
59 3 0.01
ACGTcount: A:0.29, C:0.12, G:0.13, T:0.46
Consensus pattern (56 bp):
AATTTCATGCATTTTAGGTCATTTTAGTCATTTTCATGATTTAGGGACTATTATGT
Found at i:725273 original size:28 final size:27
Alignment explanation
Indices: 725176--725320 Score: 66
Period size: 28 Copynumber: 5.1 Consensus size: 27
725166 ATTTTCACAA
* *
725176 TTTAGGGACCATTATGCAAATTCATGCAT
1 TTTA-GGACCATTATGTAATTTCATG-AT
* * *
725205 TTAAGGA-CATTTTAGTCATTTTTCATGA-
1 TTTAGGACCATTAT-GT-A-ATTTCATGAT
*
725233 TTTAGGTA-TATTATGTAATTTCATGCAT
1 TTTAGG-ACCATTATGTAATTTCATG-AT
*
725261 TTTAGGACCATTA-GTTATTTTCCATGA-
1 TTTAGGACCATTATG-TAATTT-CATGAT
* * *
725288 TTTAGTAACTATTATGAAATTTCATGAAT
1 TTTAG-GACCATTATGTAATTTCATG-AT
725317 TTTA
1 TTTA
725321 AGACAATTTT
Statistics
Matches: 88, Mismatches: 15, Indels: 26
0.68 0.12 0.20
Matches are distributed among these distances:
26 7 0.08
27 18 0.20
28 38 0.43
29 19 0.22
30 6 0.07
ACGTcount: A:0.30, C:0.11, G:0.14, T:0.45
Consensus pattern (27 bp):
TTTAGGACCATTATGTAATTTCATGAT
Found at i:726448 original size:13 final size:13
Alignment explanation
Indices: 726430--726455 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
726420 CAATTTTTGG
726430 TGTATCGATACAT
1 TGTATCGATACAT
726443 TGTATCGATACAT
1 TGTATCGATACAT
726456 ACTTGGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:726467 original size:32 final size:33
Alignment explanation
Indices: 726410--726473 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 33
726400 TACAAGCCAA
**
726410 TGTATCGATACAATTTTTGGTGTATCGATACAT
1 TGTATCGATACAATACTTGGTGTATCGATACAT
726443 TGTATCGATAC-ATACTTGGTGTATCGATACA
1 TGTATCGATACAATACTTGGTGTATCGATACA
726474 AGTTTTGCTA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 18 0.62
33 11 0.38
ACGTcount: A:0.28, C:0.14, G:0.19, T:0.39
Consensus pattern (33 bp):
TGTATCGATACAATACTTGGTGTATCGATACAT
Found at i:729007 original size:13 final size:13
Alignment explanation
Indices: 728989--729014 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
728979 ATAATCACCC
728989 TGTATCGATACAA
1 TGTATCGATACAA
729002 TGTATCGATACAA
1 TGTATCGATACAA
729015 AGAAAAATGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:732954 original size:21 final size:21
Alignment explanation
Indices: 732925--732969 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
732915 AAGTTTTTAT
*
732925 TTTTCTTAGCTAAC-TCATTA
1 TTTTCTTAGCCAACTTCATTA
*
732945 TTTTCATTAGCCAACTTCTTTA
1 TTTTC-TTAGCCAACTTCATTA
732967 TTT
1 TTT
732970 CAACTTGCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 8 0.38
22 8 0.38
ACGTcount: A:0.22, C:0.20, G:0.04, T:0.53
Consensus pattern (21 bp):
TTTTCTTAGCCAACTTCATTA
Found at i:735228 original size:32 final size:33
Alignment explanation
Indices: 735168--735231 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 33
735158 TACAAGCCAA
** *
735168 TGTATCGATACAGTTTTTGGTGTGTCGATACAT
1 TGTATCGATACAGTACTTGGTGTATCGATACAT
735201 TGTATCGATACA-TACTTGGTGTATCGATACA
1 TGTATCGATACAGTACTTGGTGTATCGATACA
735232 AGTTTGGCTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 16 0.57
33 12 0.43
ACGTcount: A:0.25, C:0.14, G:0.22, T:0.39
Consensus pattern (33 bp):
TGTATCGATACAGTACTTGGTGTATCGATACAT
Found at i:736801 original size:13 final size:13
Alignment explanation
Indices: 736780--736832 Score: 55
Period size: 13 Copynumber: 4.5 Consensus size: 13
736770 CAATACATGG
*
736780 TACAATGTATCGA
1 TACATTGTATCGA
736793 TACATTGTATCGA
1 TACATTGTATCGA
736806 TACA-TG-AT-G-
1 TACATTGTATCGA
736815 -A-ATTGTATCGA
1 TACATTGTATCGA
736826 TACATTG
1 TACATTG
736833 CTTGTAACGG
Statistics
Matches: 33, Mismatches: 1, Indels: 12
0.72 0.02 0.26
Matches are distributed among these distances:
7 1 0.03
8 3 0.09
9 2 0.06
10 2 0.06
11 2 0.06
12 3 0.09
13 20 0.61
ACGTcount: A:0.34, C:0.13, G:0.17, T:0.36
Consensus pattern (13 bp):
TACATTGTATCGA
Found at i:736809 original size:33 final size:33
Alignment explanation
Indices: 736766--736832 Score: 91
Period size: 33 Copynumber: 2.0 Consensus size: 33
736756 ACCACTGTTC
*
736766 GTATCAATACATGGT-ACAATGTATCGATACATT
1 GTATCAATACATGATGA-AATGTATCGATACATT
* *
736799 GTATCGATACATGATGAATTGTATCGATACATT
1 GTATCAATACATGATGAAATGTATCGATACATT
736832 G
1 G
736833 CTTGTAACGG
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
33 29 0.97
34 1 0.03
ACGTcount: A:0.34, C:0.13, G:0.18, T:0.34
Consensus pattern (33 bp):
GTATCAATACATGATGAAATGTATCGATACATT
Found at i:738826 original size:20 final size:21
Alignment explanation
Indices: 738785--738827 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
738775 TATTAAAAAG
738785 TTAGCTAATGAAAATAATGAA
1 TTAGCTAATGAAAATAATGAA
738806 TTAGCTAA-GAAAAATAA-GAA
1 TTAGCTAATG-AAAATAATGAA
738826 TT
1 TT
738828 TGCATGATTC
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 6 0.29
21 15 0.71
ACGTcount: A:0.53, C:0.05, G:0.14, T:0.28
Consensus pattern (21 bp):
TTAGCTAATGAAAATAATGAA
Found at i:743214 original size:21 final size:22
Alignment explanation
Indices: 743178--743218 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
743168 TTTTTTAAGA
743178 TTTGACAAAGGGGGAGAAATGC
1 TTTGACAAAGGGGGAGAAATGC
*
743200 TTTGATAAA-GGGGAGAAAT
1 TTTGACAAAGGGGGAGAAAT
743219 ATGTTTATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 10 0.56
22 8 0.44
ACGTcount: A:0.39, C:0.05, G:0.34, T:0.22
Consensus pattern (22 bp):
TTTGACAAAGGGGGAGAAATGC
Found at i:743831 original size:13 final size:13
Alignment explanation
Indices: 743813--743839 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
743803 ATATTATGCT
743813 TTGTATCGATACA
1 TTGTATCGATACA
743826 TTGTATCGATACA
1 TTGTATCGATACA
743839 T
1 T
743840 GTTCATTATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:743873 original size:20 final size:19
Alignment explanation
Indices: 743823--743879 Score: 78
Period size: 19 Copynumber: 2.9 Consensus size: 19
743813 TTGTATCGAT
*
743823 ACATTGTATCGATACATGT
1 ACATTGTATCGATACATGG
* *
743842 TCATTATATCGATACATGG
1 ACATTGTATCGATACATGG
743861 ACAATTGTATCGATACATG
1 AC-ATTGTATCGATACATG
743880 AAAATGGCAG
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
19 17 0.53
20 15 0.47
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.35
Consensus pattern (19 bp):
ACATTGTATCGATACATGG
Found at i:745227 original size:13 final size:13
Alignment explanation
Indices: 745209--745238 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
745199 GATACATGGC
745209 ACATTGTATCGAT
1 ACATTGTATCGAT
*
745222 ACATTGTGTCGAT
1 ACATTGTATCGAT
745235 ACAT
1 ACAT
745239 GATGAATTGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.30, C:0.17, G:0.17, T:0.37
Consensus pattern (13 bp):
ACATTGTATCGAT
Found at i:745239 original size:33 final size:32
Alignment explanation
Indices: 745197--745260 Score: 85
Period size: 33 Copynumber: 1.9 Consensus size: 32
745187 ATTGTTTATA
745197 TCGATACATG-GCACATTGTATCGATACATTGTG
1 TCGATACATGAG-A-ATTGTATCGATACATTGTG
*
745230 TCGATACATGATGAATTGTATTGATACATTG
1 TCGATACATGA-GAATTGTATCGATACATTG
745261 CTTTAAACGA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
33 26 0.93
34 1 0.04
35 1 0.04
ACGTcount: A:0.30, C:0.14, G:0.20, T:0.36
Consensus pattern (32 bp):
TCGATACATGAGAATTGTATCGATACATTGTG
Found at i:750244 original size:21 final size:20
Alignment explanation
Indices: 750212--750296 Score: 89
Period size: 21 Copynumber: 4.1 Consensus size: 20
750202 ATTTGAATGA
* *
750212 AATGATGTATTTACTGGATG
1 AATGATGCATTTATTGGATG
* *
750232 AATGAATGCATTTGTTGGATAA
1 AATG-ATGCATTTATTGGAT-G
*
750254 AATGATGCATTTGTTGGATG
1 AATGATGCATTTATTGGATG
*
750274 AATAAATGCATTTATTGGATG
1 AAT-GATGCATTTATTGGATG
750295 AA
1 AA
750297 AAGATATAAC
Statistics
Matches: 55, Mismatches: 7, Indels: 5
0.82 0.10 0.07
Matches are distributed among these distances:
20 7 0.13
21 44 0.80
22 4 0.07
ACGTcount: A:0.34, C:0.05, G:0.24, T:0.38
Consensus pattern (20 bp):
AATGATGCATTTATTGGATG
Found at i:750272 original size:42 final size:43
Alignment explanation
Indices: 750211--750298 Score: 124
Period size: 42 Copynumber: 2.1 Consensus size: 43
750201 CATTTGAATG
* * *
750211 AAATGATGTATTTACTGGATGAATGAATGCATTTGTTGGAT-A
1 AAATGATGCATTTACTGGATGAATAAATGCATTTATTGGATGA
**
750253 AAATGATGCATTTGTTGGATGAATAAATGCATTTATTGGATGA
1 AAATGATGCATTTACTGGATGAATAAATGCATTTATTGGATGA
750296 AAA
1 AAA
750299 GATATAACTT
Statistics
Matches: 40, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
42 36 0.90
43 4 0.10
ACGTcount: A:0.36, C:0.05, G:0.23, T:0.36
Consensus pattern (43 bp):
AAATGATGCATTTACTGGATGAATAAATGCATTTATTGGATGA
Found at i:750687 original size:3 final size:3
Alignment explanation
Indices: 750679--750707 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
750669 GAGACTCGTC
750679 TAT TAT TAT TAT TAT TAT T-T TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
750708 GGGCACTTGG
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 2 0.08
3 23 0.92
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TAT
Found at i:751946 original size:13 final size:13
Alignment explanation
Indices: 751928--751961 Score: 68
Period size: 13 Copynumber: 2.6 Consensus size: 13
751918 TTAAATAATA
751928 TTCATATTTTATG
1 TTCATATTTTATG
751941 TTCATATTTTATG
1 TTCATATTTTATG
751954 TTCATATT
1 TTCATATT
751962 AATGTTTCTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.24, C:0.09, G:0.06, T:0.62
Consensus pattern (13 bp):
TTCATATTTTATG
Found at i:751973 original size:25 final size:26
Alignment explanation
Indices: 751928--751977 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 26
751918 TTAAATAATA
*
751928 TTCATATTTTATGTTCATATTTTATG
1 TTCATATTTAATGTTCATATTTTATG
751954 TTCATA-TTAATGTTTC-TATTTTAT
1 TTCATATTTAATG-TTCATATTTTAT
751978 ATTATAATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
25 13 0.59
26 9 0.41
ACGTcount: A:0.24, C:0.08, G:0.06, T:0.62
Consensus pattern (26 bp):
TTCATATTTAATGTTCATATTTTATG
Found at i:754504 original size:16 final size:16
Alignment explanation
Indices: 754485--754515 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
754475 TCTCGAGCTC
*
754485 GAAAGAACCCGAACCA
1 GAAAGAACCCAAACCA
754501 GAAAGAACCCAAACC
1 GAAAGAACCCAAACC
754516 CGAGACTAAC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.52, C:0.32, G:0.16, T:0.00
Consensus pattern (16 bp):
GAAAGAACCCAAACCA
Found at i:755580 original size:30 final size:30
Alignment explanation
Indices: 755546--755602 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
755536 AAGTAAAGAG
* * *
755546 AGTGATAAATAGTGATGAATAGTGATAAAC
1 AGTGATAAACAATGATGAACAGTGATAAAC
755576 AGTGATAAACAATGATGAACAGTGATA
1 AGTGATAAACAATGATGAACAGTGATA
755603 CATATCGATA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.47, C:0.05, G:0.23, T:0.25
Consensus pattern (30 bp):
AGTGATAAACAATGATGAACAGTGATAAAC
Found at i:755585 original size:10 final size:10
Alignment explanation
Indices: 755546--755602 Score: 69
Period size: 10 Copynumber: 5.7 Consensus size: 10
755536 AAGTAAAGAG
*
755546 AGTGATAAAT
1 AGTGATAAAC
* *
755556 AGTGATGAAT
1 AGTGATAAAC
755566 AGTGATAAAC
1 AGTGATAAAC
755576 AGTGATAAAC
1 AGTGATAAAC
* *
755586 AATGATGAAC
1 AGTGATAAAC
755596 AGTGATA
1 AGTGATA
755603 CATATCGATA
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
10 40 1.00
ACGTcount: A:0.47, C:0.05, G:0.23, T:0.25
Consensus pattern (10 bp):
AGTGATAAAC
Found at i:755628 original size:14 final size:14
Alignment explanation
Indices: 755609--755636 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
755599 GATACATATC
755609 GATACATGAATAGT
1 GATACATGAATAGT
755623 GATACATGAATAGT
1 GATACATGAATAGT
755637 AATATATCAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.07, G:0.21, T:0.29
Consensus pattern (14 bp):
GATACATGAATAGT
Found at i:755722 original size:19 final size:20
Alignment explanation
Indices: 755678--755727 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
755668 TGCCAATTTT
* **
755678 ATGTATCGATATAATTTATG
1 ATGTATCGATATAATTGAAC
755698 ATGTATCGATATAA-TGAAC
1 ATGTATCGATATAATTGAAC
755717 ATGTATCGATA
1 ATGTATCGATA
755728 CATTATATCA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
19 13 0.48
20 14 0.52
ACGTcount: A:0.38, C:0.08, G:0.16, T:0.38
Consensus pattern (20 bp):
ATGTATCGATATAATTGAAC
Found at i:756716 original size:138 final size:138
Alignment explanation
Indices: 756455--756772 Score: 537
Period size: 138 Copynumber: 2.3 Consensus size: 138
756445 TTATAACAAC
*
756455 TAATCATTTTCTCCCCCCTTACTAAAATATCTCCCCCAAAATTATAAACTCTTCTCCCCCTTTCT
1 TAATCATTTTCT-CCCCCTTACTAAAATATCTCCCCCAAAATTATAAACTCTTATCCCCCTTTCT
*** *
756520 ATTAGGCCAAAACTATTCTTCCTTTTTTGTTATTCTTGTAACTAATACCAAGAGTTTATACATGT
65 ATTAGGCCAAAACTATTCTTCCCCCTTTGTTATTCTTATAACTAATACCAAGAGTTTATACATGT
*
756585 TCTCCCCTT
130 TCTCCCCCT
* *
756594 TAATCATTTTCTCCCCCTTATTAAAATATCTCCCCCAAAATTATAAACTCTTATCCCTCTTTCTA
1 TAATCATTTTCTCCCCCTTACTAAAATATCTCCCCCAAAATTATAAACTCTTATCCCCCTTTCTA
* *
756659 TTAGGCCAAAACTATTCTTCCCCCTTTGTTATTCTTATAACTAATATCGAGAGTTTATACATGTT
66 TTAGGCCAAAACTATTCTTCCCCCTTTGTTATTCTTATAACTAATACCAAGAGTTTATACATGTT
756724 CTCCCCCT
131 CTCCCCCT
756732 TAATCATTTTCTCCCCCTTACTAAAATATCTCCCCCAAAAT
1 TAATCATTTTCTCCCCCTTACTAAAATATCTCCCCCAAAAT
756773 ATGTTCTCAC
Statistics
Matches: 168, Mismatches: 11, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
138 156 0.93
139 12 0.07
ACGTcount: A:0.27, C:0.29, G:0.04, T:0.39
Consensus pattern (138 bp):
TAATCATTTTCTCCCCCTTACTAAAATATCTCCCCCAAAATTATAAACTCTTATCCCCCTTTCTA
TTAGGCCAAAACTATTCTTCCCCCTTTGTTATTCTTATAACTAATACCAAGAGTTTATACATGTT
CTCCCCCT
Found at i:756802 original size:38 final size:38
Alignment explanation
Indices: 756754--756844 Score: 137
Period size: 38 Copynumber: 2.4 Consensus size: 38
756744 CCCCCTTACT
* *
756754 AAAATATCTCCCCCAAAATATGTTCTCACCAATAAACA
1 AAAATCTCTCCCCCAAAATAAGTTCTCACCAATAAACA
**
756792 AAAATCTCTCCCCCTTAATAAGTTCTCACCAATAAACA
1 AAAATCTCTCCCCCAAAATAAGTTCTCACCAATAAACA
*
756830 AAAATCTTTCCCCCA
1 AAAATCTCTCCCCCA
756845 TTTTATTATA
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
38 47 1.00
ACGTcount: A:0.41, C:0.32, G:0.02, T:0.25
Consensus pattern (38 bp):
AAAATCTCTCCCCCAAAATAAGTTCTCACCAATAAACA
Found at i:758982 original size:21 final size:21
Alignment explanation
Indices: 758958--759015 Score: 75
Period size: 21 Copynumber: 2.8 Consensus size: 21
758948 TTTATTAGTT
*
758958 AACTCA-TCATTTTCATTTTGC
1 AACTCATTCATTTTC-TTTTCC
758979 AACTCATTTC-TTTTCTTTTCC
1 AACTCA-TTCATTTTCTTTTCC
759000 AACTCATTCATTTTCT
1 AACTCATTCATTTTCT
759016 CCTCTAGTTC
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
20 3 0.09
21 23 0.70
22 5 0.15
23 2 0.06
ACGTcount: A:0.21, C:0.26, G:0.02, T:0.52
Consensus pattern (21 bp):
AACTCATTCATTTTCTTTTCC
Found at i:761165 original size:24 final size:24
Alignment explanation
Indices: 761137--761201 Score: 94
Period size: 24 Copynumber: 2.7 Consensus size: 24
761127 GTATCATTAT
* * * *
761137 ATGAACAGTGATGAATAGTTATAC
1 ATGAACAGTGATAAACAATGATAC
761161 ATGAACAGTGATAAACAATGATAC
1 ATGAACAGTGATAAACAATGATAC
761185 ATGAACAGTGATAAACA
1 ATGAACAGTGATAAACA
761202 GTAATGTATA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 37 1.00
ACGTcount: A:0.48, C:0.11, G:0.18, T:0.23
Consensus pattern (24 bp):
ATGAACAGTGATAAACAATGATAC
Found at i:762457 original size:13 final size:13
Alignment explanation
Indices: 762439--762464 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
762429 ACATAAGTGT
762439 TGTATCGATACAA
1 TGTATCGATACAA
762452 TGTATCGATACAA
1 TGTATCGATACAA
762465 AGCTACCCTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:762529 original size:13 final size:13
Alignment explanation
Indices: 762511--762538 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
762501 CATTATTCAA
762511 TGTATCGATACAT
1 TGTATCGATACAT
762524 TGTATCGATACAT
1 TGTATCGATACAT
762537 TG
1 TG
762539 ATCTTTGTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.14, G:0.18, T:0.39
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:762533 original size:33 final size:33
Alignment explanation
Indices: 762491--762557 Score: 100
Period size: 33 Copynumber: 2.0 Consensus size: 33
762481 GGCAAGGAAA
762491 TGTATCGATACATT-ATTCAATGTATCGATACAT
1 TGTATCGATACATTGA-TCAATGTATCGATACAT
**
762524 TGTATCGATACATTGATCTTTGTATCGATACAT
1 TGTATCGATACATTGATCAATGTATCGATACAT
762557 T
1 T
762558 TGAGAATTTT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
33 30 0.97
34 1 0.03
ACGTcount: A:0.30, C:0.15, G:0.13, T:0.42
Consensus pattern (33 bp):
TGTATCGATACATTGATCAATGTATCGATACAT
Found at i:776430 original size:15 final size:14
Alignment explanation
Indices: 776401--776451 Score: 57
Period size: 15 Copynumber: 3.4 Consensus size: 14
776391 CGTCCTCCGT
* *
776401 AAAAAAAAGAGACA
1 AAAAAAAAAAAACA
776415 AAAAAATAAAAAACA
1 AAAAAA-AAAAAACA
776430 AAAAGAAAAAAAACA
1 AAAA-AAAAAAAACA
776445 ACAAAAA
1 A-AAAAA
776452 GGGTCCGGAT
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
14 6 0.19
15 21 0.66
16 5 0.16
ACGTcount: A:0.84, C:0.08, G:0.06, T:0.02
Consensus pattern (14 bp):
AAAAAAAAAAAACA
Found at i:776438 original size:18 final size:18
Alignment explanation
Indices: 776416--776452 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
776406 AAAGAGACAA
*
776416 AAAAATAAAAAACAAAAAG
1 AAAAA-AAACAACAAAAAG
776435 AAAAAAAACAACAAAAAG
1 AAAAAAAACAACAAAAAG
776453 GGTCCGGATG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 12 0.71
19 5 0.29
ACGTcount: A:0.84, C:0.08, G:0.05, T:0.03
Consensus pattern (18 bp):
AAAAAAAACAACAAAAAG
Found at i:776442 original size:25 final size:25
Alignment explanation
Indices: 776404--776451 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
776394 CCTCCGTAAA
* * *
776404 AAAAAGAGACAAAAAAATAAAAAAC
1 AAAAAGAAAAAAAAAAACAAAAAAC
*
776429 AAAAAGAAAAAAAACAACAAAAA
1 AAAAAGAAAAAAAAAAACAAAAA
776452 GGGTCCGGAT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.83, C:0.08, G:0.06, T:0.02
Consensus pattern (25 bp):
AAAAAGAAAAAAAAAAACAAAAAAC
Found at i:777922 original size:28 final size:28
Alignment explanation
Indices: 777881--778398 Score: 473
Period size: 28 Copynumber: 18.4 Consensus size: 28
777871 CCTCACCTTC
* * * *
777881 CAAATCCCAAAAGTCAATGGCATCTTTT
1 CAAAGCCCACAAGTCAGTGGCAACTTTT
** *
777909 CAAAGCCCACAAGTCAGCAGCAACCTTT
1 CAAAGCCCACAAGTCAGTGGCAACTTTT
* * *
777937 AAAAGCCCACAAGTCAGTTGCACCTTTT
1 CAAAGCCCACAAGTCAGTGGCAACTTTT
*
777965 CAAAGCCCACAAGTCAAGTGGCAAC-CTT
1 CAAAGCCCACAAGTC-AGTGGCAACTTTT
* * *
777993 CAGAAGCCCACAAGTCGGTGGCACCCCTTT
1 CA-AAGCCCACAAGTCAGTGGCA-ACTTTT
*
778023 CAAAGCCCACAAGTCAGTGGCAAC-CTT
1 CAAAGCCCACAAGTCAGTGGCAACTTTT
* *
778050 CAAAAGCCTACAAGTCAGTGGCATCTTTT
1 C-AAAGCCCACAAGTCAGTGGCAACTTTT
*
778079 CAAAGCCCACAAGTCAGTGGCAAC-CTT
1 CAAAGCCCACAAGTCAGTGGCAACTTTT
* * * *
778106 CAAAATCTCACAAGTTAGTGGCATCTTTT
1 C-AAAGCCCACAAGTCAGTGGCAACTTTT
* * *
778135 CAAAGCCCACGAGTCAGTGGTAACCTTT
1 CAAAGCCCACAAGTCAGTGGCAACTTTT
* *
778163 -AAGAGCCCACAAGTTAGTGGCATCTTTT
1 CAA-AGCCCACAAGTCAGTGGCAACTTTT
778191 CAAAGCCCACAAGTCAGTGGCAAGC--TT
1 CAAAGCCCACAAGTCAGTGGCAA-CTTTT
* * * *
778218 CAGAAGCCCATAAGTCGGTGGCACCCCTTT
1 CA-AAGCCCACAAGTCAGTGGCA-ACTTTT
*
778248 CAAAGCCCACAAGTCAGTGGCAAC-CTT
1 CAAAGCCCACAAGTCAGTGGCAACTTTT
* *
778275 CAAAAGCCCACAAGTTAGTGGCATCTTTT
1 C-AAAGCCCACAAGTCAGTGGCAACTTTT
* *
778304 CAAAGCCCACAAGTCAATGGCAACCTTT
1 CAAAGCCCACAAGTCAGTGGCAACTTTT
* *
778332 -AAAGCCCACAAGGCAGTGGCAAC-CTT
1 CAAAGCCCACAAGTCAGTGGCAACTTTT
* *
778358 CAAAAGCACACAAGTC-GAT-GCAACCCTTT
1 C-AAAGCCCACAAGTCAG-TGGCAA-CTTTT
778387 CAAAAGCCCACA
1 C-AAAGCCCACA
778399 CAAGTTGGTG
Statistics
Matches: 400, Mismatches: 68, Indels: 43
0.78 0.13 0.08
Matches are distributed among these distances:
26 2 0.00
27 41 0.10
28 266 0.67
29 83 0.21
30 8 0.02
ACGTcount: A:0.32, C:0.30, G:0.18, T:0.20
Consensus pattern (28 bp):
CAAAGCCCACAAGTCAGTGGCAACTTTT
Found at i:777965 original size:56 final size:56
Alignment explanation
Indices: 777875--778398 Score: 642
Period size: 56 Copynumber: 9.3 Consensus size: 56
777865 GACTTTCCTC
* * * * **
777875 ACCTTCCAAATCCCAAAAGTCAATGGCATCTTTTCAAAGCCCACAAGTCAGCAGCA
1 ACCTTCAAAAGCCCACAAGTCAGTGGCATCTTTTCAAAGCCCACAAGTCAGTGGCA
* * *
777931 ACCTTTAAAAGCCCACAAGTCAGTTGCACCTTTTCAAAGCCCACAAGTCAAGTGGCA
1 ACCTTCAAAAGCCCACAAGTCAGTGGCATCTTTTCAAAGCCCACAAGTC-AGTGGCA
* * * *
777988 ACCTTCAGAAGCCCACAAGTCGGTGGCACCCCTTTCAAAGCCCACAAGTCAGTGGCA
1 ACCTTCAAAAGCCCACAAGTCAGTGGCA-TCTTTTCAAAGCCCACAAGTCAGTGGCA
*
778045 ACCTTCAAAAGCCTACAAGTCAGTGGCATCTTTTCAAAGCCCACAAGTCAGTGGCA
1 ACCTTCAAAAGCCCACAAGTCAGTGGCATCTTTTCAAAGCCCACAAGTCAGTGGCA
* * * * *
778101 ACCTTCAAAATCTCACAAGTTAGTGGCATCTTTTCAAAGCCCACGAGTCAGTGGTA
1 ACCTTCAAAAGCCCACAAGTCAGTGGCATCTTTTCAAAGCCCACAAGTCAGTGGCA
* * *
778157 ACCTTTAAGAGCCCACAAGTTAGTGGCATCTTTTCAAAGCCCACAAGTCAGTGGCA
1 ACCTTCAAAAGCCCACAAGTCAGTGGCATCTTTTCAAAGCCCACAAGTCAGTGGCA
* * * * * *
778213 AGCTTCAGAAGCCCATAAGTCGGTGGCACCCCTTTCAAAGCCCACAAGTCAGTGGCA
1 ACCTTCAAAAGCCCACAAGTCAGTGGCA-TCTTTTCAAAGCCCACAAGTCAGTGGCA
* *
778270 ACCTTCAAAAGCCCACAAGTTAGTGGCATCTTTTCAAAGCCCACAAGTCAATGGCA
1 ACCTTCAAAAGCCCACAAGTCAGTGGCATCTTTTCAAAGCCCACAAGTCAGTGGCA
* * * * *
778326 ACCTT-TAAAGCCCACAAGGCAGTGGCAAC-CTTCAAAAGCACACAAGTC-GAT-GCA
1 ACCTTCAAAAGCCCACAAGTCAGTGGCATCTTTTC-AAAGCCCACAAGTCAG-TGGCA
778380 ACCCTTTCAAAAGCCCACA
1 A-CC-TTCAAAAGCCCACA
778399 CAAGTTGGTG
Statistics
Matches: 404, Mismatches: 56, Indels: 15
0.85 0.12 0.03
Matches are distributed among these distances:
54 7 0.02
55 36 0.09
56 221 0.55
57 120 0.30
58 20 0.05
ACGTcount: A:0.32, C:0.30, G:0.18, T:0.20
Consensus pattern (56 bp):
ACCTTCAAAAGCCCACAAGTCAGTGGCATCTTTTCAAAGCCCACAAGTCAGTGGCA
Found at i:778297 original size:225 final size:226
Alignment explanation
Indices: 777875--778398 Score: 743
Period size: 225 Copynumber: 2.3 Consensus size: 226
777865 GACTTTCCTC
*
777875 ACCTTCCAAATCCCAAAAGTCAATGGCATCTTTTCAAAGCCCACAAGTCAGCAGCAACCTTTAAA
1 ACCTTCAAAATCCCAAAAGTCAATGGCATCTTTTCAAAGCCCACAAGTCAGCAGCAACCTTTAAA
*
777940 AGCCCACAAGTCAGTTGCACCTTTTCAAAGCCCACAAGTCAAGTGGCAACCTTCAGAAGCCCACA
66 AGCCCACAAGTCAGTGGCACCTTTTCAAAGCCCACAAGTCAAGTGGCAACCTTCAGAAGCCCACA
*
778005 AGTCGGTGGCACCCCTTTCAAAGCCCACAAGTCAGTGGCAACCTTCAAAAGCCTACAAGTCAGTG
131 AGTCGGTGGCACCCCTTTCAAAGCCCACAAGTCAGTGGCAACCTTCAAAAGCCCACAAGTCAGTG
*
778070 GCATCTTTTCAAAGCCCACAAGTCAGTGGCA
196 GCATCTTTTCAAAGCCCACAAGTCAATGGCA
* * * * * ** * *
778101 ACCTTCAAAATCTCACAAGTTAGTGGCATCTTTTCAAAGCCCACGAGTCAGTGGTAACCTTTAAG
1 ACCTTCAAAATCCCAAAAGTCAATGGCATCTTTTCAAAGCCCACAAGTCAGCAGCAACCTTTAAA
* * * *
778166 AGCCCACAAGTTAGTGGCATCTTTTCAAAGCCCACAAGTC-AGTGGCAAGCTTCAGAAGCCCATA
66 AGCCCACAAGTCAGTGGCACCTTTTCAAAGCCCACAAGTCAAGTGGCAACCTTCAGAAGCCCACA
*
778230 AGTCGGTGGCACCCCTTTCAAAGCCCACAAGTCAGTGGCAACCTTCAAAAGCCCACAAGTTAGTG
131 AGTCGGTGGCACCCCTTTCAAAGCCCACAAGTCAGTGGCAACCTTCAAAAGCCCACAAGTCAGTG
778295 GCATCTTTTCAAAGCCCACAAGTCAATGGCA
196 GCATCTTTTCAAAGCCCACAAGTCAATGGCA
* * * * * * * *
778326 ACCTT-TAAAGCCCACAAGGCAGTGGCAAC-CTTCAAAAGCACACAAGTC-G-ATGCAACCCTTT
1 ACCTTCAAAATCCCAAAAGTCAATGGCATCTTTTC-AAAGCCCACAAGTCAGCA-GCAA-CCTTT
778387 CAAAAGCCCACA
63 -AAAAGCCCACA
778399 CAAGTTGGTG
Statistics
Matches: 264, Mismatches: 30, Indels: 9
0.87 0.10 0.03
Matches are distributed among these distances:
223 7 0.03
224 35 0.13
225 130 0.49
226 92 0.35
ACGTcount: A:0.32, C:0.30, G:0.18, T:0.20
Consensus pattern (226 bp):
ACCTTCAAAATCCCAAAAGTCAATGGCATCTTTTCAAAGCCCACAAGTCAGCAGCAACCTTTAAA
AGCCCACAAGTCAGTGGCACCTTTTCAAAGCCCACAAGTCAAGTGGCAACCTTCAGAAGCCCACA
AGTCGGTGGCACCCCTTTCAAAGCCCACAAGTCAGTGGCAACCTTCAAAAGCCCACAAGTCAGTG
GCATCTTTTCAAAGCCCACAAGTCAATGGCA
Found at i:779298 original size:19 final size:19
Alignment explanation
Indices: 779274--779333 Score: 69
Period size: 19 Copynumber: 3.5 Consensus size: 19
779264 AAATAGTAAA
779274 TGTATCGATACATAAGTGT
1 TGTATCGATACATAAGTGT
*
779293 TGTATCCATAC--AA----
1 TGTATCGATACATAAGTGT
779306 TGTATCGATACATAAGTGT
1 TGTATCGATACATAAGTGT
779325 TGTATCGAT
1 TGTATCGAT
779334 GCAAAGGTAC
Statistics
Matches: 33, Mismatches: 2, Indels: 12
0.70 0.04 0.26
Matches are distributed among these distances:
13 10 0.30
15 2 0.06
17 2 0.06
19 19 0.58
ACGTcount: A:0.32, C:0.13, G:0.18, T:0.37
Consensus pattern (19 bp):
TGTATCGATACATAAGTGT
Found at i:779388 original size:19 final size:20
Alignment explanation
Indices: 779364--779415 Score: 72
Period size: 20 Copynumber: 2.6 Consensus size: 20
779354 GCCAAGGAAG
779364 TGTATCGATACATT-AT-TCA
1 TGTATCGATACATTGATCT-A
*
779383 TGTATCGATACATTGATCTT
1 TGTATCGATACATTGATCTA
779403 TGTATCGATACAT
1 TGTATCGATACAT
779416 CTGGGAATTT
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
19 14 0.47
20 15 0.50
21 1 0.03
ACGTcount: A:0.29, C:0.15, G:0.13, T:0.42
Consensus pattern (20 bp):
TGTATCGATACATTGATCTA
Found at i:779408 original size:20 final size:19
Alignment explanation
Indices: 779364--779415 Score: 70
Period size: 19 Copynumber: 2.7 Consensus size: 19
779354 GCCAAGGAAG
779364 TGTATCGATACATTATTCA
1 TGTATCGATACATTATTCA
*
779383 TGTATCGATACATTGA-TCTT
1 TGTATCGATACATT-ATTC-A
779403 TGTATCGATACAT
1 TGTATCGATACAT
779416 CTGGGAATTT
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
19 16 0.53
20 14 0.47
ACGTcount: A:0.29, C:0.15, G:0.13, T:0.42
Consensus pattern (19 bp):
TGTATCGATACATTATTCA
Found at i:780378 original size:18 final size:19
Alignment explanation
Indices: 780357--780397 Score: 57
Period size: 20 Copynumber: 2.2 Consensus size: 19
780347 AATTGTCAAA
780357 ACAC-TTAAAAGTATCGAT
1 ACACATTAAAAGTATCGAT
*
780375 ACACAATTCAAAGTATCGAT
1 ACAC-ATTAAAAGTATCGAT
780395 ACA
1 ACA
780398 TGTTGCAATG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 4 0.20
20 16 0.80
ACGTcount: A:0.46, C:0.20, G:0.10, T:0.24
Consensus pattern (19 bp):
ACACATTAAAAGTATCGAT
Found at i:780507 original size:13 final size:13
Alignment explanation
Indices: 780489--780514 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
780479 TACACCAAGT
780489 ATGTATCGATACA
1 ATGTATCGATACA
780502 ATGTATCGATACA
1 ATGTATCGATACA
780515 CCAAAACATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:787186 original size:21 final size:20
Alignment explanation
Indices: 787144--787186 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
787134 GGCAGCACCA
* *
787144 CCAGGTCGCGACCGGCATTC
1 CCAGGTCGCAACCGGCAGTC
787164 CCAGGTCGCAACCGGGCAGTC
1 CCAGGTCGCAACC-GGCAGTC
787185 CC
1 CC
787187 CACACTAACC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 12 0.60
21 8 0.40
ACGTcount: A:0.16, C:0.42, G:0.30, T:0.12
Consensus pattern (20 bp):
CCAGGTCGCAACCGGCAGTC
Found at i:788543 original size:28 final size:28
Alignment explanation
Indices: 788503--788556 Score: 108
Period size: 28 Copynumber: 1.9 Consensus size: 28
788493 AAATAATTTT
788503 TTTTTTGATATGAATTACTTGATTAAAA
1 TTTTTTGATATGAATTACTTGATTAAAA
788531 TTTTTTGATATGAATTACTTGATTAA
1 TTTTTTGATATGAATTACTTGATTAA
788557 GGGGGAGATT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.33, C:0.04, G:0.11, T:0.52
Consensus pattern (28 bp):
TTTTTTGATATGAATTACTTGATTAAAA
Found at i:789321 original size:13 final size:13
Alignment explanation
Indices: 789303--789328 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
789293 TGCACCAAGT
789303 ATGTATCGATACA
1 ATGTATCGATACA
789316 ATGTATCGATACA
1 ATGTATCGATACA
789329 CCAAAACATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:793887 original size:24 final size:20
Alignment explanation
Indices: 793867--793970 Score: 82
Period size: 20 Copynumber: 4.7 Consensus size: 20
793857 TTTTCATAAT
793867 TTGTATCGATACATTTTTCA
1 TTGTATCGATACATTTTTCA
793887 TTGTATCGATACATTCTGGGTTTTACCCA
1 TTGTATCGATACA---T---TTTT---CA
* *
793916 GATGTATCGATACATTGTTCA
1 -TTGTATCGATACATTTTTCA
* *
793937 TTGTATTGATACATTGTTCA
1 TTGTATCGATACATTTTTCA
793957 TTGTATCGATACAT
1 TTGTATCGATACAT
793971 ACTGGGTTTT
Statistics
Matches: 69, Mismatches: 5, Indels: 20
0.73 0.05 0.21
Matches are distributed among these distances:
20 44 0.64
21 2 0.03
23 1 0.01
24 3 0.04
26 4 0.06
27 1 0.01
29 2 0.03
30 12 0.17
ACGTcount: A:0.25, C:0.15, G:0.15, T:0.44
Consensus pattern (20 bp):
TTGTATCGATACATTTTTCA
Found at i:793941 original size:70 final size:70
Alignment explanation
Indices: 793867--794021 Score: 265
Period size: 70 Copynumber: 2.2 Consensus size: 70
793857 TTTTCATAAT
* *
793867 TTGTATCGATACATTTTTCATTGTATCGATACATTCTGGGTTTTACCCAGATGTATCGATACATT
1 TTGTATCGATACATTGTTCATTGTATCGATACATACTGGGTTTTACCCAGATGTATCGATACATT
793932 GTTCA
66 GTTCA
*
793937 TTGTATTGATACATTGTTCATTGTATCGATACATACTGGGTTTTACCCAGATGTATCGATACATT
1 TTGTATCGATACATTGTTCATTGTATCGATACATACTGGGTTTTACCCAGATGTATCGATACATT
*
794002 TTTCA
66 GTTCA
*
794007 ATGTATCGATACATT
1 TTGTATCGATACATT
794022 AAGGCATTTT
Statistics
Matches: 79, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
70 79 1.00
ACGTcount: A:0.26, C:0.16, G:0.15, T:0.43
Consensus pattern (70 bp):
TTGTATCGATACATTGTTCATTGTATCGATACATACTGGGTTTTACCCAGATGTATCGATACATT
GTTCA
Found at i:793947 original size:20 final size:20
Alignment explanation
Indices: 793918--793970 Score: 97
Period size: 20 Copynumber: 2.6 Consensus size: 20
793908 TTTACCCAGA
793918 TGTATCGATACATTGTTCAT
1 TGTATCGATACATTGTTCAT
*
793938 TGTATTGATACATTGTTCAT
1 TGTATCGATACATTGTTCAT
793958 TGTATCGATACAT
1 TGTATCGATACAT
793971 ACTGGGTTTT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.26, C:0.13, G:0.15, T:0.45
Consensus pattern (20 bp):
TGTATCGATACATTGTTCAT
Found at i:796458 original size:78 final size:78
Alignment explanation
Indices: 796362--797060 Score: 732
Period size: 78 Copynumber: 8.9 Consensus size: 78
796352 ATTTATGTTT
* * *
796362 TTATTTCCAAGGGGATACTCCAACCCCGGTTTTATTTTCAAAACACCAATTTTTTACAATCGAGG
1 TTATTTTCGAGGGGATACTCCAACCCCGGTTTTATTTTCAAAACACCAATTTTTCACAATCGAGG
796427 ATACTCCAACCTG
66 ATACTCCAACCTG
*
796440 TTATTTTCGAGGGGATACTCCAA-CCCGGTTTTATTTTCAAAACACTAATTTTTCACAATCGAGG
1 TTATTTTCGAGGGGATACTCCAACCCCGGTTTTATTTTCAAAACACCAATTTTTCACAATCGAGG
*
796504 ATACTCTAACCTTG
66 ATACTCCAACC-TG
* * * * * * *
796518 TCATTTCCGAGGAGATACACCAATCCCGATTTTA-TTTCTAAAACACCAATTTTTCACAATCGAA
1 TTATTTTCGAGGGGATACTCCAACCCCGGTTTTATTTTC-AAAACACCAATTTTTCACAATCGAG
796582 GATACTCCAACCCTG
65 GATACTCCAA-CCTG
* * * *
796597 TTATTTTTGAGGGGATACTCAAACCCTGGTTTTATTTTCAAAACATCAA-TTTTCACAATCGAGG
1 TTATTTTCGAGGGGATACTCCAACCCCGGTTTTATTTTCAAAACACCAATTTTTCACAATCGAGG
* **
796661 ATACTTCAAACCCA
66 ATAC-TCCAACCTG
* * * * *
796675 TTACTTTT-GAGGGGATACTCCAACCCCGATTTTATTTCCAAAATACCAATTTTTCAGAATCGGG
1 TTA-TTTTCGAGGGGATACTCCAACCCCGGTTTTATTTTCAAAACACCAATTTTTCACAATCGAG
*
796739 GATACTCTAACCTCG
65 GATACTCCAACCT-G
* * * * * * *
796754 TTATTTTCGAGGAGATACTCTAACCCCGGTTTAATTTCCAAAACACTAATCTTTCACAATTG-GG
1 TTATTTTCGAGGGGATACTCCAACCCCGGTTTTATTTTCAAAACACCAATTTTTCACAATCGAGG
*
796818 ATACTCCAACCTC
66 ATACTCCAACCTG
* *** * * *
796831 TT-TATTTCTGAGGGGATACTCTAATTTCGATTTTATTTCCAAAACACCAATTTTTCACAATTG-
1 TTAT-TTTC-GAGGGGATACTCCAACCCCGGTTTTATTTTCAAAACACCAATTTTTCACAATCGA
* **
796894 GGATGCTCCAACCCCA
64 GGATACTCCAA-CCTG
* *** * * *
796910 TTA-TTTCTGAGGGGATACTTCAACCCTAATTTTATTTCCAAAACACTAATTTTTCACAATCAAG
1 TTATTTTC-GAGGGGATACTCCAACCCCGGTTTTATTTTCAAAACACCAATTTTTCACAATCGAG
796974 GATACTCCAACCTCG
65 GATACTCCAACCT-G
* * * *
796989 TTA-TTTCTGAGGGGATACTCCAACCCTGGTTTTATTTTCAAAAAACTAATTTTTTCACAATCGG
1 TTATTTTC-GAGGGGATACTCCAACCCCGGTTTTATTTTCAAAACACCAA-TTTTTCACAATCGA
797053 GGATACTC
64 GGATACTC
797061 TAATACTCCA
Statistics
Matches: 524, Mismatches: 80, Indels: 32
0.82 0.13 0.05
Matches are distributed among these distances:
76 1 0.00
77 55 0.10
78 234 0.45
79 208 0.40
80 26 0.05
ACGTcount: A:0.30, C:0.24, G:0.13, T:0.34
Consensus pattern (78 bp):
TTATTTTCGAGGGGATACTCCAACCCCGGTTTTATTTTCAAAACACCAATTTTTCACAATCGAGG
ATACTCCAACCTG
Found at i:796692 original size:157 final size:155
Alignment explanation
Indices: 796362--797060 Score: 781
Period size: 157 Copynumber: 4.5 Consensus size: 155
796352 ATTTATGTTT
** * *
796362 TTATTTCCAAGGGGATACTCCAACCCCGGTTTTATTT-TCAAAACACCAATTTTTTACAATCGAG
1 TTATTTCTGAGGGGATACTCCAACCCCGATTTTATTTCT-AAAACACCAATTTTTCACAATCGAG
*
796426 GATACTCCAACCTGTTATTTTCGAGGGGATACTCCAACCC-GGTTTTATTTTCAAAACACTAATT
65 GATACTCCAACCTGTTATTTTCGAGGGGATACT-CAACCCTGGTTTTATTTCCAAAACACTAATT
*
796490 TTTCACAATCGAGGATACTCTAACCT-
129 TTTCACAATCGAGGATACTCCAACCTC
* * * *
796516 TGTCATTTCCGAGGAGATACACCAATCCCGATTTTATTTCTAAAACACCAATTTTTCACAATCGA
1 T-T-ATTTCTGAGGGGATACTCCAACCCCGATTTTATTTCTAAAACACCAATTTTTCACAATCGA
* * *
796581 AGATACTCCAACCCTGTTATTTTTGAGGGGATACTCAAACCCTGGTTTTATTTTCAAAACA-TCA
64 GGATACTCCAA-CCTGTTATTTTCGAGGGGATACTC-AACCCTGGTTTTATTTCCAAAACACT-A
*
796645 A-TTTTCACAATCGAGGATACTTCAAACC-C
126 ATTTTTCACAATCGAGGATAC-TCCAACCTC
* * * *
796674 ATTACTTT-TGAGGGGATACTCCAACCCCGATTTTATTTCCAAAATACCAATTTTTCAGAATCGG
1 -TTA-TTTCTGAGGGGATACTCCAACCCCGATTTTATTTCTAAAACACCAATTTTTCACAATCGA
* * * *
796738 GGATACTCTAACCTCGTTATTTTCGAGGAGATACTCTAACCCCGGTTTAATTTCCAAAACACTAA
64 GGATACTCCAACCT-GTTATTTTCGAGGGGATACTC-AACCCTGGTTTTATTTCCAAAACACTAA
* *
796803 TCTTTCACAATTG-GGATACTCCAACCTC
127 TTTTTCACAATCGAGGATACTCCAACCTC
* *** * *
796831 TTTATTTCTGAGGGGATACTCTAATTTCGATTTTATTTCCAAAACACCAATTTTTCACAATTG-G
1 -TTATTTCTGAGGGGATACTCCAACCCCGATTTTATTTCTAAAACACCAATTTTTCACAATCGAG
* ** **
796895 GATGCTCCAACCCCATTA-TTTCTGAGGGGATACTTCAACCCTAATTTTATTTCCAAAACACTAA
65 GATACTCCAA-CCTGTTATTTTC-GAGGGGATAC-TCAACCCTGGTTTTATTTCCAAAACACTAA
*
796959 TTTTTCACAATCAAGGATACTCCAACCTC
127 TTTTTCACAATCGAGGATACTCCAACCTC
* * * *
796988 GTTATTTCTGAGGGGATACTCCAACCCTGGTTTTATTT-TCAAAAAACTAATTTTTTCACAATCG
1 -TTATTTCTGAGGGGATACTCCAACCCCGATTTTATTTCT-AAAACACCAA-TTTTTCACAATCG
*
797052 GGGATACTC
63 AGGATACTC
797061 TAATACTCCA
Statistics
Matches: 462, Mismatches: 60, Indels: 41
0.82 0.11 0.07
Matches are distributed among these distances:
154 1 0.00
155 5 0.01
156 131 0.28
157 264 0.57
158 53 0.11
159 8 0.02
ACGTcount: A:0.30, C:0.24, G:0.13, T:0.34
Consensus pattern (155 bp):
TTATTTCTGAGGGGATACTCCAACCCCGATTTTATTTCTAAAACACCAATTTTTCACAATCGAGG
ATACTCCAACCTGTTATTTTCGAGGGGATACTCAACCCTGGTTTTATTTCCAAAACACTAATTTT
TCACAATCGAGGATACTCCAACCTC
Found at i:796823 original size:235 final size:235
Alignment explanation
Indices: 796361--797060 Score: 847
Period size: 235 Copynumber: 3.0 Consensus size: 235
796351 CATTTATGTT
** * * *
796361 TTTATTTCCAAGGGGATACTCCAACCCCGGTTTTATTTTCAAAACACCAATTTTTTACAATCGAG
1 TTTATTTCTGAGGGGATACTCAAACCCTGGTTTTATTTTCAAAACACCAATTTTTCACAATCGAG
* ** * *
796426 GATAC-TCCAACCTGTTATTTTCGAGGGGATACTCCAA-CCCGGTTTTATTTTCAAAACACTAAT
66 GATACTTCAAACCCATTATTTT-GAGGGGATACTCCAACCCCGATTTTATTTCCAAAACACTAAT
* * * * * *
796489 TTTTCACAATCGAGGATACTCTAACCTTGTCATTTCCGAGGAGATACACCAATCCCGATTTTATT
130 TTTTCACAATCGAGGATACTCTAACCTCGTTATTTTCGAGGAGATACTCCAACCCCGGTTTTATT
* * *
796554 TCTAAAACACCAATTTTTCACAATCGAAGATACTCCAACC-C
195 TCCAAAACACTAATTTTTCACAATCG-GGATACTCCAACCTC
* *
796595 TGTTATTTTTGAGGGGATACTCAAACCCTGGTTTTATTTTCAAAACATCAA-TTTTCACAATCGA
1 T-TTATTTCTGAGGGGATACTCAAACCCTGGTTTTATTTTCAAAACACCAATTTTTCACAATCGA
* *
796659 GGATACTTCAAACCCATTACTTTTGAGGGGATACTCCAACCCCGATTTTATTTCCAAAATACCAA
65 GGATACTTCAAACCCATTA-TTTTGAGGGGATACTCCAACCCCGATTTTATTTCCAAAACACTAA
* * * *
796724 TTTTTCAGAATCGGGGATACTCTAACCTCGTTATTTTCGAGGAGATACTCTAACCCCGGTTTAAT
129 TTTTTCACAATCGAGGATACTCTAACCTCGTTATTTTCGAGGAGATACTCCAACCCCGGTTTTAT
* *
796789 TTCCAAAACACTAATCTTTCACAATTGGGATACTCCAACCTC
194 TTCCAAAACACTAATTTTTCACAATCGGGATACTCCAACCTC
* ** * * *
796831 TTTATTTCTGAGGGGATACTCTAA-TTTCGATTTTATTTCCAAAACACCAATTTTTCACAATTG-
1 TTTATTTCTGAGGGGATACTCAAACCCT-GGTTTTATTTTCAAAACACCAATTTTTCACAATCGA
* * * * **
796894 GGATGCTCCAACCCCATTATTTCTGAGGGGATACTTCAACCCTAATTTTATTTCCAAAACACTAA
65 GGATACTTCAAACCCATTATTT-TGAGGGGATACTCCAACCCCGATTTTATTTCCAAAACACTAA
* * * *
796959 TTTTTCACAATCAAGGATACTCCAACCTCGTTA-TTTCTGAGGGGATACTCCAACCCTGGTTTTA
129 TTTTTCACAATCGAGGATACTCTAACCTCGTTATTTTC-GAGGAGATACTCCAACCCCGGTTTTA
* *
797023 TTTTCAAAAAACTAATTTTTTCACAATCGGGGATACTC
193 TTTCCAAAACACTAA-TTTTTCACAATC-GGGATACTC
797061 TAATACTCCA
Statistics
Matches: 398, Mismatches: 57, Indels: 19
0.84 0.12 0.04
Matches are distributed among these distances:
234 27 0.07
235 236 0.59
236 126 0.32
237 9 0.02
ACGTcount: A:0.30, C:0.24, G:0.13, T:0.34
Consensus pattern (235 bp):
TTTATTTCTGAGGGGATACTCAAACCCTGGTTTTATTTTCAAAACACCAATTTTTCACAATCGAG
GATACTTCAAACCCATTATTTTGAGGGGATACTCCAACCCCGATTTTATTTCCAAAACACTAATT
TTTCACAATCGAGGATACTCTAACCTCGTTATTTTCGAGGAGATACTCCAACCCCGGTTTTATTT
CCAAAACACTAATTTTTCACAATCGGGATACTCCAACCTC
Found at i:797182 original size:139 final size:139
Alignment explanation
Indices: 796924--797184 Score: 314
Period size: 139 Copynumber: 1.9 Consensus size: 139
796914 TTCTGAGGGG
* * * *
796924 ATACTTCAACCCTAATTTTATTTCCAAAACACTAATTTTTCACAATCAAGGATACTCCAACCTCG
1 ATACTCCAACCCTAATTTTATTTCCAAAACACCAATTTTCCACAATCAAGGATACTCCAACCCCG
* * *
796989 TTATTTCTGAGGGGATACTCCAACCCTGGTTTTATTTTCAAAAAACTAATTTTTTCACAATCGGG
66 TTATTTCTGAGGGGATACTCCAACCCTAGTTTTATTCTCAAAAAACTAAATTTTTCACAATCGGG
797054 GATACTCTA
131 GATACTCTA
* * * *
797063 ATACTCCAACCCTAGTTTTATTTTCAAAACACCAATTTTCCAGAATC-AGGCATACTCCCACCCC
1 ATACTCCAACCCTAATTTTATTTCCAAAACACCAATTTTCCACAATCAAGG-ATACTCCAACCCC
* * * * *
797127 GTTATTT-TCGAGAGGG-TACTTCGACCCTATTTTTA-TCTCTAAAATATTAAATTTTTCA
65 GTTATTTCT-GAG-GGGATACTCCAACCCTAGTTTTATTCTC-AAAAAACTAAATTTTTCA
797185 TCGGGAGATG
Statistics
Matches: 102, Mismatches: 16, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
138 7 0.07
139 92 0.90
140 3 0.03
ACGTcount: A:0.31, C:0.24, G:0.10, T:0.36
Consensus pattern (139 bp):
ATACTCCAACCCTAATTTTATTTCCAAAACACCAATTTTCCACAATCAAGGATACTCCAACCCCG
TTATTTCTGAGGGGATACTCCAACCCTAGTTTTATTCTCAAAAAACTAAATTTTTCACAATCGGG
GATACTCTA
Found at i:806726 original size:18 final size:18
Alignment explanation
Indices: 806703--806738 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
806693 GATATGATTG
806703 CCAAATCACTAAAGGAGA
1 CCAAATCACTAAAGGAGA
806721 CCAAATCACTAAAGGAGA
1 CCAAATCACTAAAGGAGA
806739 GTGAACACAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.50, C:0.22, G:0.17, T:0.11
Consensus pattern (18 bp):
CCAAATCACTAAAGGAGA
Found at i:807128 original size:19 final size:18
Alignment explanation
Indices: 807096--807160 Score: 61
Period size: 19 Copynumber: 3.8 Consensus size: 18
807086 ATTTCAACGA
807096 TTTGTATCTG-TACATAAG
1 TTTGTATC-GATACATAAG
807114 TGTTGTATCGATAC--AA-
1 T-TTGTATCGATACATAAG
807130 --TGTATCGATACATAAG
1 TTTGTATCGATACATAAG
807146 TTTTGTATCGATACA
1 -TTTGTATCGATACA
807161 ATGTATCGCT
Statistics
Matches: 39, Mismatches: 0, Indels: 15
0.72 0.00 0.28
Matches are distributed among these distances:
13 11 0.28
15 2 0.05
17 2 0.05
18 2 0.05
19 22 0.56
ACGTcount: A:0.31, C:0.12, G:0.17, T:0.40
Consensus pattern (18 bp):
TTTGTATCGATACATAAG
Found at i:807133 original size:13 final size:13
Alignment explanation
Indices: 807117--807141 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
807107 ACATAAGTGT
807117 TGTATCGATACAA
1 TGTATCGATACAA
807130 TGTATCGATACA
1 TGTATCGATACA
807142 TAAGTTTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:807134 original size:32 final size:32
Alignment explanation
Indices: 807098--807168 Score: 117
Period size: 32 Copynumber: 2.2 Consensus size: 32
807088 TTCAACGATT
807098 TGTATCTG-TACATAAGTGTTGTATCGATACAA
1 TGTATC-GATACATAAGTGTTGTATCGATACAA
*
807130 TGTATCGATACATAAGTTTTGTATCGATACAA
1 TGTATCGATACATAAGTGTTGTATCGATACAA
807162 TGTATCG
1 TGTATCG
807169 CTACGAAGCT
Statistics
Matches: 37, Mismatches: 1, Indels: 2
0.93 0.03 0.05
Matches are distributed among these distances:
31 1 0.03
32 36 0.97
ACGTcount: A:0.31, C:0.13, G:0.18, T:0.38
Consensus pattern (32 bp):
TGTATCGATACATAAGTGTTGTATCGATACAA
Found at i:807210 original size:13 final size:13
Alignment explanation
Indices: 807192--807216 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
807182 ACCAAGAAAA
807192 TGTATCGATACAT
1 TGTATCGATACAT
807205 TGTATCGATACA
1 TGTATCGATACA
807217 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:812200 original size:20 final size:20
Alignment explanation
Indices: 812175--812212 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
812165 CTGCCAAGGA
* *
812175 AATGTATCGATACCTTATTC
1 AATGTATCAATACATTATTC
812195 AATGTATCAATACATTAT
1 AATGTATCAATACATTAT
812213 ATCGATACAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.37, C:0.16, G:0.08, T:0.39
Consensus pattern (20 bp):
AATGTATCAATACATTATTC
Found at i:816563 original size:10 final size:10
Alignment explanation
Indices: 816501--816544 Score: 54
Period size: 10 Copynumber: 4.4 Consensus size: 10
816491 CCTTTTTTCC
816501 AAAA-AAAAA
1 AAAACAAAAA
*
816510 AAAACAAAAC
1 AAAACAAAAA
*
816520 GAAACAAAAA
1 AAAACAAAAA
816530 AAAACAACAAA
1 AAAACAA-AAA
816541 AAAA
1 AAAA
816545 GTGAAAAAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
9 4 0.14
10 18 0.62
11 7 0.24
ACGTcount: A:0.86, C:0.11, G:0.02, T:0.00
Consensus pattern (10 bp):
AAAACAAAAA
Found at i:823040 original size:11 final size:11
Alignment explanation
Indices: 823024--823064 Score: 73
Period size: 11 Copynumber: 3.6 Consensus size: 11
823014 TTCTTTTTAT
823024 AAAAAAACAAA
1 AAAAAAACAAA
823035 AAAAAAACAAA
1 AAAAAAACAAA
823046 AAACAAAACAAA
1 AAA-AAAACAAA
823058 AAAAAAA
1 AAAAAAA
823065 GAGAGAAAAG
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
11 18 0.62
12 11 0.38
ACGTcount: A:0.90, C:0.10, G:0.00, T:0.00
Consensus pattern (11 bp):
AAAAAAACAAA
Found at i:823041 original size:12 final size:12
Alignment explanation
Indices: 823024--823064 Score: 66
Period size: 12 Copynumber: 3.5 Consensus size: 12
823014 TTCTTTTTAT
823024 AAAAAAAC-AAA
1 AAAAAAACAAAA
823035 AAAAAAACAAAA
1 AAAAAAACAAAA
*
823047 AACAAAACAAAA
1 AAAAAAACAAAA
823059 AAAAAA
1 AAAAAA
823065 GAGAGAAAAG
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
11 8 0.30
12 19 0.70
ACGTcount: A:0.90, C:0.10, G:0.00, T:0.00
Consensus pattern (12 bp):
AAAAAAACAAAA
Found at i:823048 original size:18 final size:18
Alignment explanation
Indices: 823024--823064 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
823014 TTCTTTTTAT
823024 AAAAAAACAAAA-AAAAA
1 AAAAAAACAAAACAAAAA
823041 ACAAAAAACAAAACAAAAA
1 A-AAAAAACAAAACAAAAA
823060 AAAAA
1 AAAAA
823065 GAGAGAAAAG
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 1 0.05
18 15 0.68
19 6 0.27
ACGTcount: A:0.90, C:0.10, G:0.00, T:0.00
Consensus pattern (18 bp):
AAAAAAACAAAACAAAAA
Found at i:824115 original size:34 final size:34
Alignment explanation
Indices: 824077--824178 Score: 83
Period size: 34 Copynumber: 3.2 Consensus size: 34
824067 AGCAGGACGC
824077 CTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCA
1 CTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCA
* * * ** **
824111 CTTTT-C---T--AGTCCTCAAAGAGCAGGACGC-
1 CTTTTCCTTTTAAAGCCCACACA-AGTTGGTGGCA
824139 CTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCA
1 CTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCA
824173 CTTTTC
1 CTTTTC
824179 TAGTCCTCAA
Statistics
Matches: 46, Mismatches: 14, Indels: 16
0.61 0.18 0.21
Matches are distributed among these distances:
28 12 0.26
29 7 0.15
30 1 0.02
32 1 0.02
33 7 0.15
34 18 0.39
ACGTcount: A:0.23, C:0.27, G:0.18, T:0.32
Consensus pattern (34 bp):
CTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCA
Found at i:824271 original size:61 final size:61
Alignment explanation
Indices: 824048--824315 Score: 421
Period size: 62 Copynumber: 4.4 Consensus size: 61
824038 TTTCTGCTTT
* *
824048 CACTTTTCAATCCTCAAGGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGG
1 CACTTTTCAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGG
824109 CACTTTTCTAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGG
1 CACTTTTC-AGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGG
*
824171 CACTTTTCTAGTCCTCAAAGAGCAGGACGCCTTTT-CTTTTAAAGCCTACACAAGTTGGTGG
1 CACTTTTC-AGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGG
* * * *
824232 CACTTTTCAGTCCTCAAGGAGTAGGATGCCTTTTCCTTTTCAAGCCCACACAAGTTGGTGG
1 CACTTTTCAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGG
** *
824293 CACTTCCCAGTCCTCAAAAAGCA
1 CACTTTTCAGTCCTCAAAGAGCA
824316 AGATGCTATC
Statistics
Matches: 192, Mismatches: 13, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
60 23 0.12
61 83 0.43
62 86 0.45
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.29
Consensus pattern (61 bp):
CACTTTTCAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGG
Found at i:824409 original size:62 final size:61
Alignment explanation
Indices: 824332--825043 Score: 804
Period size: 60 Copynumber: 11.7 Consensus size: 61
824322 TATCTCCTTT
* *
824332 CACCTTTTAGTCCTCAAAGAGCAGGACGCTTTTTCCTTTTGAAAGCCCACACAAGTTGGTGG
1 CACCTTCTAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTT-AAAGCCCACACAAGTTGGTGG
* * * * *
824394 CACCTTCTAGTCCTCAAAGAGTAGGATGCATTTTCCTTTCAAAGCCCACACAAGCTGGTGG
1 CACCTTCTAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGG
* * * *
824455 CACCTTC-AGTCCTCAAAGAGTAGGATGCCTTTTCCTTTTAAAGACCACACAATTTGGTGG
1 CACCTTCTAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGG
* * * * *
824515 CACCTT-TAGTCCTTAAAGAGCAAGACGCCTTTTCTTTTTAAAGCCCACATAATTTGGTGG
1 CACCTTCTAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGG
*** * * * * * *
824575 TGTCTTC-AGTCCTCAATGAGCAGGACACCTTTTCCTTTCAAAGCCCACATAAGCTAGTGG
1 CACCTTCTAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGG
* * * * * *
824635 CACCCTC-AGTCCTTAAGGAGTAGGACGCCTTTTCCTTTTAAAGCCCACAAAAGCTGGTGG
1 CACCTTCTAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGG
* * * ** * *
824695 CACCTTCCAATGCTCAAAGAGCATAATGCTTTTTCCTTTTAAAGCCCACACAAGTTGGTGG
1 CACCTTCTAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGG
* * *
824756 CACTTTTCTAGTCCTCAAAGAGTAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGG
1 CAC-CTTCTAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGG
* * * * * *
824818 CACTTTTTCAATCCTCAAAGAGTAGGATGCCTTTTCCTTTTAAAGCCTACACAAGTTGGTGG
1 CACCTTCT-AGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGG
* * * * *
824880 CACCTTCCAGTCCTTAAAAAGCAGGATG-CTTTCTCCTTATAAAGCCCACACAAGTTGGTGG
1 CACCTTCTAGTCCTCAAAGAGCAGGACGCCTTT-TCCTTTTAAAGCCCACACAAGTTGGTGG
* * *
824941 CACCTTTCTAGTCCTCAAAGAGCAGGACACCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGG
1 CACC-TTCTAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTT-AAAGCCCACACAAGTTGGTGG
** * *
825004 CATTTTTTAGTCCTTAAAGAGCAGGACGCCTTTTCCTTTT
1 CACCTTCTAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTT
825044 CTCCTTTGTC
Statistics
Matches: 554, Mismatches: 87, Indels: 18
0.84 0.13 0.03
Matches are distributed among these distances:
60 206 0.37
61 122 0.22
62 200 0.36
63 26 0.05
ACGTcount: A:0.25, C:0.26, G:0.19, T:0.30
Consensus pattern (61 bp):
CACCTTCTAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGG
Done.