Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold312
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1822960
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
File 7 of 12
Found at i:989100 original size:16 final size:16
Alignment explanation
Indices: 989067--989117 Score: 57
Period size: 17 Copynumber: 3.1 Consensus size: 16
989057 CTCAAAATAG
*
989067 AAAAACAAAAATAAAAA
1 AAAAACAAAAA-GAAAA
*
989084 AAAAGAGAAAAAGAAAA
1 AAAA-ACAAAAAGAAAA
*
989101 AAAAACAAAATGAAAA
1 AAAAACAAAAAGAAAA
989117 A
1 A
989118 GAAATTGCAG
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
16 11 0.38
17 12 0.41
18 6 0.21
ACGTcount: A:0.84, C:0.04, G:0.08, T:0.04
Consensus pattern (16 bp):
AAAAACAAAAAGAAAA
Found at i:989118 original size:22 final size:23
Alignment explanation
Indices: 989059--989121 Score: 74
Period size: 24 Copynumber: 2.7 Consensus size: 23
989049 AAAGTTTCCT
*
989059 CAAAATAGAAAAACAAAAATAAAA
1 CAAAAT-GAAAAAGAAAAATAAAA
* *
989083 AAAAAGAGAAAAAGAAAAA-AAAA
1 CAAAA-TGAAAAAGAAAAATAAAA
989106 CAAAATGAAAAAGAAA
1 CAAAATGAAAAAGAAA
989122 TTGCAGATAG
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
22 10 0.30
23 8 0.24
24 15 0.45
ACGTcount: A:0.81, C:0.05, G:0.10, T:0.05
Consensus pattern (23 bp):
CAAAATGAAAAAGAAAAATAAAA
Found at i:990430 original size:84 final size:84
Alignment explanation
Indices: 990256--990459 Score: 239
Period size: 84 Copynumber: 2.4 Consensus size: 84
990246 CATTTAGATA
* * * ** * * *
990256 ACATTGGCATTTACATCATTTCATATGCACCTGCCACCTGATGCTTGTATTTGCATTGTTTCATG
1 ACATTGGTATTCACATCATATCATATGCATTTGCCACCTAATGCCTGTATTTCCATTGTTTCATG
* * *
990321 CATATTTGTATTTTATATG
66 CATATTTGTATCTTACACG
* *
990340 AAATTGGTATTCACATCATATCATATGCATTTGCCACCTAATGCCTGTATTTCCATTGTTTCATT
1 ACATTGGTATTCACATCATATCATATGCATTTGCCACCTAATGCCTGTATTTCCATTGTTTCATG
*
990405 CATATTTGTGTCTTACACG
66 CATATTTGTATCTTACACG
* **
990424 ACATTGGTA-TCTACATCATACCCCATGCATTTGCCA
1 ACATTGGTATTC-ACATCATATCATATGCATTTGCCA
990460 TTTTATTGAT
Statistics
Matches: 101, Mismatches: 18, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
83 2 0.02
84 99 0.98
ACGTcount: A:0.25, C:0.22, G:0.13, T:0.41
Consensus pattern (84 bp):
ACATTGGTATTCACATCATATCATATGCATTTGCCACCTAATGCCTGTATTTCCATTGTTTCATG
CATATTTGTATCTTACACG
Found at i:991223 original size:88 final size:85
Alignment explanation
Indices: 991064--991332 Score: 254
Period size: 88 Copynumber: 3.0 Consensus size: 85
991054 AAAGGGGCAT
* * * * * * *
991064 GGTGCAGCCCATACATTCCTAATTATATCCCTTTTATCCAACCA-CTAGATGGTATCAGTGCATC
1 GGTGTAGCCCACACATT-CTAATTATATCCC-CTTATCTAACCATC-AGA-GGTTTTAATGCATC
991128 ACAAAGCCTAATTTCCTTAGGATAA
62 ACAAAGCCTAATTTCCTTAGG-TAA
991153 GGTGTAGCCCACACATTCGTAATTATATCCCCTTATCTAACCATCAGACGGTTTTAATGCATCAC
1 GGTGTAGCCCACACATTC-TAATTATATCCCCTTATCTAACCATCAGA-GGTTTTAATGCATCAC
*
991218 AAAGCCTAATTTCCTTGGGGTAA
64 AAAGCCTAATTTCCTT-AGGTAA
* * * * * *
991241 GGTATAGCCCACATATTCTAAATCATATCCCCTTCACCCTAACCAAT-AGATGTTATTGATGCAT
1 GGTGTAGCCCACACATTCT-AATTATATCCCCTT-A-TCTAACC-ATCAGAGGTT-TTAATGCAT
* *
991305 TACAAAGCCTTATTTCCTTGAGGTAA
61 CACAAAGCCTAATTTCCTT-AGGTAA
991331 GG
1 GG
991333 GTATCCCTAT
Statistics
Matches: 154, Mismatches: 18, Indels: 15
0.82 0.10 0.08
Matches are distributed among these distances:
87 1 0.01
88 75 0.49
89 34 0.22
90 42 0.27
91 2 0.01
ACGTcount: A:0.30, C:0.25, G:0.14, T:0.31
Consensus pattern (85 bp):
GGTGTAGCCCACACATTCTAATTATATCCCCTTATCTAACCATCAGAGGTTTTAATGCATCACAA
AGCCTAATTTCCTTAGGTAA
Found at i:991321 original size:90 final size:88
Alignment explanation
Indices: 991122--991332 Score: 257
Period size: 88 Copynumber: 2.4 Consensus size: 88
991112 ATGGTATCAG
* * * *
991122 TGCATCACAAAGCCTAATTTCCTTAGGATAAGGTGTAGCCCACACATTCGTAATTATATCCCCTT
1 TGCATCACAAAGCCTAATTTCCTTGGGGTAAGGTATAGCCCACACATTCGTAATCATATCCCCTT
*
991187 ATCTAACCATCAGACGGTTTTAA
66 ACCTAACCATCAGACGGTTTTAA
*
991210 TGCATCACAAAGCCTAATTTCCTTGGGGTAAGGTATAGCCCACATATTC-TAAATCATATCCCCT
1 TGCATCACAAAGCCTAATTTCCTTGGGGTAAGGTATAGCCCACACATTCGT-AATCATATCCCCT
* *
991274 TCACCCTAACCAAT-AGA-TGTTATTGA
65 T-A-CCTAACC-ATCAGACGGTT-TTAA
* * *
991300 TGCATTACAAAGCCTTATTTCCTTGAGGTAAGG
1 TGCATCACAAAGCCTAATTTCCTTGGGGTAAGG
991333 GTATCCCTAT
Statistics
Matches: 107, Mismatches: 11, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
87 1 0.01
88 58 0.54
89 4 0.04
90 42 0.39
91 2 0.02
ACGTcount: A:0.30, C:0.24, G:0.15, T:0.31
Consensus pattern (88 bp):
TGCATCACAAAGCCTAATTTCCTTGGGGTAAGGTATAGCCCACACATTCGTAATCATATCCCCTT
ACCTAACCATCAGACGGTTTTAA
Found at i:991928 original size:66 final size:69
Alignment explanation
Indices: 991849--992001 Score: 215
Period size: 66 Copynumber: 2.2 Consensus size: 69
991839 CAAACTCTCC
* * *
991849 CCACCATCGTTTGACTGTATCTAGTCAAAC-TCTTTTCATCATTG-TT-A-TATCTAGTCAAACT
1 CCACCATCATTTGACTGTATCTAGTCAAACTTCTTTCCATCATCGTTTGACTATCTAGTCAAA-T
991910 TCTTT
65 TCTTT
991915 CCACCATCATTTGACTGTATCTAGTCAAACTTCTTTCCATCATCGTTTGACTGTATCTAGTCAAA
1 CCACCATCATTTGACTGTATCTAGTCAAACTTCTTTCCATCATCGTTTGAC--TATCTAGTCAAA
991980 TTCTTT
64 TTCTTT
*
991986 CCACCCTCATTTGACT
1 CCACCATCATTTGACT
992002 ATATTGGTGT
Statistics
Matches: 77, Mismatches: 4, Indels: 7
0.88 0.05 0.08
Matches are distributed among these distances:
66 29 0.38
67 12 0.16
68 2 0.03
69 1 0.01
71 21 0.27
72 12 0.16
ACGTcount: A:0.24, C:0.27, G:0.09, T:0.41
Consensus pattern (69 bp):
CCACCATCATTTGACTGTATCTAGTCAAACTTCTTTCCATCATCGTTTGACTATCTAGTCAAATT
CTTT
Found at i:991938 original size:36 final size:35
Alignment explanation
Indices: 991804--992001 Score: 199
Period size: 35 Copynumber: 5.7 Consensus size: 35
991794 TCTTACCAAA
* * * * * *
991804 CAAACTCTTCCCACTATCATTTTACTATACCTGGT
1 CAAACTCTTTCCACCATCATTTGACTGTATCTAGT
** *
991839 CAAACTCTCCCCACCATCGTTTGACTGTATCTAGT
1 CAAACTCTTTCCACCATCATTTGACTGTATCTAGT
* * *
991874 CAAACTCTTT---TCATCA-TTG-TTATATCTAGT
1 CAAACTCTTTCCACCATCATTTGACTGTATCTAGT
991904 CAAACTTCTTTCCACCATCATTTGACTGTATCTAGT
1 CAAAC-TCTTTCCACCATCATTTGACTGTATCTAGT
* *
991940 CAAACTTCTTTCCATCATCGTTTGACTGTATCTAGT
1 CAAAC-TCTTTCCACCATCATTTGACTGTATCTAGT
* *
991976 CAAATTCTTTCCACCCTCATTTGACT
1 CAAACTCTTTCCACCATCATTTGACT
992002 ATATTGGTGT
Statistics
Matches: 135, Mismatches: 22, Indels: 12
0.80 0.13 0.07
Matches are distributed among these distances:
30 14 0.10
31 8 0.06
32 4 0.03
34 5 0.04
35 57 0.42
36 47 0.35
ACGTcount: A:0.24, C:0.29, G:0.08, T:0.39
Consensus pattern (35 bp):
CAAACTCTTTCCACCATCATTTGACTGTATCTAGT
Found at i:992075 original size:47 final size:48
Alignment explanation
Indices: 991992--992131 Score: 165
Period size: 48 Copynumber: 2.9 Consensus size: 48
991982 CTTTCCACCC
* * * * *
991992 TCATTTGACTATATTGGTGTTAGTACCTAGTTAAACTCTTCTCA-CCT
1 TCATTTGACTATATTGGTGTTAGGACTTGGTCAAACTCTTCTCATCAT
* ** *
992039 TTATTTGACTATATTGGTGTTAGGGGTTGGTCAAACTCTTTTCATCAT
1 TCATTTGACTATATTGGTGTTAGGACTTGGTCAAACTCTTCTCATCAT
* * *
992087 TCGTTTGACTGTATTGGTGTTAGGACTTGGTCAAACTCTTTTCAT
1 TCATTTGACTATATTGGTGTTAGGACTTGGTCAAACTCTTCTCAT
992132 TTCGGCCTAA
Statistics
Matches: 78, Mismatches: 14, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
47 36 0.46
48 42 0.54
ACGTcount: A:0.21, C:0.16, G:0.19, T:0.44
Consensus pattern (48 bp):
TCATTTGACTATATTGGTGTTAGGACTTGGTCAAACTCTTCTCATCAT
Found at i:992238 original size:45 final size:44
Alignment explanation
Indices: 992181--992428 Score: 202
Period size: 44 Copynumber: 5.6 Consensus size: 44
992171 TTCATCCTGA
**
992181 TTTGACATATGGTTATGACCCTGGTCAAA-TCTGCCTCATTTTCTG
1 TTTGACATATGGTTACCACCCTGGTCAAACTCT-CCTCA-TTTCTG
* * * *
992226 TTTGACATATGGTTACCACCTTGGTTAAACTCTTCTCATTTCGG
1 TTTGACATATGGTTACCACCCTGGTCAAACTCTCCTCATTTCTG
* * **
992270 TTTGACATATGGTTACCACCCTGGTTAAATTCTTTTCA-TTCTG
1 TTTGACATATGGTTACCACCCTGGTCAAACTCTCCTCATTTCTG
* * * *
992313 ATTTGACGTATAGTTACCACTCTAGTCAAA-TCTGCCTC-TTTCCTG
1 -TTTGACATATGGTTACCACCCTGGTCAAACTCT-CCTCATTT-CTG
* * *** *
992358 TTTCACATATGATTACCATTTTGGTCAAACGTAT-CTCATTT-TGG
1 TTTGACATATGGTTACCACCCTGGTCAAAC-TCTCCTCATTTCT-G
*
992402 TTTGACGTATGGTTACCACCCTGGTCA
1 TTTGACATATGGTTACCACCCTGGTCA
992429 GATTCTTGTT
Statistics
Matches: 163, Mismatches: 31, Indels: 19
0.77 0.15 0.09
Matches are distributed among these distances:
43 8 0.05
44 115 0.71
45 35 0.21
46 5 0.03
ACGTcount: A:0.21, C:0.23, G:0.16, T:0.40
Consensus pattern (44 bp):
TTTGACATATGGTTACCACCCTGGTCAAACTCTCCTCATTTCTG
Found at i:992265 original size:133 final size:132
Alignment explanation
Indices: 992112--992433 Score: 394
Period size: 133 Copynumber: 2.4 Consensus size: 132
992102 GGTGTTAGGA
* ** * * *
992112 CTTGGTCAAACTCTTTTCATTTCGGCCTAACGTATGGTTACCACCCTAGACAGATTCCTTTCATC
1 CTTGGTCAAACTCTTCTCATTTCGGTTTGACGTATGGTTACCACCCTGGTCAGATTCCTTTCATC
* ** * * * *
992177 CTGATTTGACATATGGTTATGACCCTGGTCAAATCTGCCTCATTTTCTGTTTGACATATGGTTAC
66 CTGATTTGACATATAGTTACCACCCTAGTCAAATCTGCCTC-TTTCCTGTTTCACATATGATTAC
992242 CAC
130 CAC
* * * * * *
992245 CTTGGTTAAACTCTTCTCATTTCGGTTTGACATATGGTTACCACCCTGGTTAAATTCTTTTCATT
1 CTTGGTCAAACTCTTCTCATTTCGGTTTGACGTATGGTTACCACCCTGGTCAGATTCCTTTCATC
* *
992310 CTGATTTGACGTATAGTTACCACTCTAGTCAAATCTGCCTCTTTCCTGTTTCACATATGATTACC
66 CTGATTTGACATATAGTTACCACCCTAGTCAAATCTGCCTCTTTCCTGTTTCACATATGATTACC
*
992375 AT
131 AC
* * *
992377 TTTGGTCAAACGT-ATCTCATTTTGGTTTGACGTATGGTTACCACCCTGGTCAGATTC
1 CTTGGTCAAAC-TCTTCTCATTTCGGTTTGACGTATGGTTACCACCCTGGTCAGATTC
992434 TTGTTATGTT
Statistics
Matches: 159, Mismatches: 29, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
132 70 0.44
133 89 0.56
ACGTcount: A:0.21, C:0.24, G:0.16, T:0.39
Consensus pattern (132 bp):
CTTGGTCAAACTCTTCTCATTTCGGTTTGACGTATGGTTACCACCCTGGTCAGATTCCTTTCATC
CTGATTTGACATATAGTTACCACCCTAGTCAAATCTGCCTCTTTCCTGTTTCACATATGATTACC
AC
Found at i:992461 original size:132 final size:131
Alignment explanation
Indices: 992112--992475 Score: 390
Period size: 132 Copynumber: 2.7 Consensus size: 131
992102 GGTGTTAGGA
* * ** * * * *
992112 CTTGGTCAAACTCTTTTCATTTCGGCCTAACGTATGGTTACCACCCTAGACAGATTCCTTTCATC
1 CTTGGTCAAACTCATCTCATTTCGGTTTGACGTATGGTTACCACCCTGGTCAGATT-CTTTTAT-
* * ** * * *
992177 CTGATTTGACATATGGTTATGACCCTGGTCAAATCTGCCTCATTTTCTGTTTGACATATGGTTAC
64 TTGATTTGACGTATGGTTACCACCCTGGTCAAATCTGCCTCATTTCCTGTTTCACATATGATTAC
992242 CAC
129 CAC
* * * * *
992245 CTTGGTTAAACTCTTCTCATTTCGGTTTGACATATGGTTACCACCCTGGTTAAATTCTTTTCATT
1 CTTGGTCAAACTCATCTCATTTCGGTTTGACGTATGGTTACCACCCTGGTCAGATTCTTTT-ATT
* * *
992310 CTGATTTGACGTATAGTTACCACTCTAGTCAAATCTGCCTC-TTTCCTGTTTCACATATGATTAC
65 -TGATTTGACGTATGGTTACCACCCTGGTCAAATCTGCCTCATTTCCTGTTTCACATATGATTAC
*
992374 CAT
129 CAC
* *
992377 TTTGGTCAAACGT-ATCTCATTTTGGTTTGACGTATGGTTACCACCCTGGTCAGATTCTTGTTAT
1 CTTGGTCAAAC-TCATCTCATTTCGGTTTGACGTATGGTTACCACCCTGGTCAGATTCTT-TTAT
* * *
992441 GTTGATATGATGTATGGTTACTACCCTGGTCAAAT
64 -TTGATTTGACGTATGGTTACCACCCTGGTCAAAT
992476 TTTTTTCCCT
Statistics
Matches: 191, Mismatches: 35, Indels: 11
0.81 0.15 0.05
Matches are distributed among these distances:
132 105 0.55
133 86 0.45
ACGTcount: A:0.22, C:0.23, G:0.16, T:0.40
Consensus pattern (131 bp):
CTTGGTCAAACTCATCTCATTTCGGTTTGACGTATGGTTACCACCCTGGTCAGATTCTTTTATTT
GATTTGACGTATGGTTACCACCCTGGTCAAATCTGCCTCATTTCCTGTTTCACATATGATTACCA
C
Found at i:992961 original size:84 final size:83
Alignment explanation
Indices: 992795--992976 Score: 208
Period size: 84 Copynumber: 2.2 Consensus size: 83
992785 TAGTCAACTT
* * *
992795 TTCATCTC-TGTTTACTTGTCGGTTCAGTCCCGATAAACCCATTACCCCTATAGTGACTTGTCAG
1 TTCATCTCTTGTTTACTTGTCGGCTCAGTCCCGATAAACCCATTACCCCTATAGTGACTGGCCAG
** * *
992859 CTCAGTCTCTAATCAACC
66 CTCAAACTCCAATAAACC
* * *
992877 TTCATCTCATTGTTTACTTGTCGGCTCAGTCCTCGGTAAACTCATTA-CCTTATAGTGACTGGCC
1 TTCATCTC-TTGTTTACTTGTCGGCTCAGTCC-CGATAAACCCATTACCCCTATAGTGACTGGCC
*
992941 AGCTCAAACTCCGATAAACC
64 AGCTCAAACTCCAATAAACC
*
992961 TTTATC-CTTTGTTTAC
1 TTCATCTC-TTGTTTAC
992977 CTATCGACTC
Statistics
Matches: 84, Mismatches: 13, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
82 8 0.10
83 9 0.11
84 55 0.65
85 12 0.14
ACGTcount: A:0.22, C:0.29, G:0.14, T:0.36
Consensus pattern (83 bp):
TTCATCTCTTGTTTACTTGTCGGCTCAGTCCCGATAAACCCATTACCCCTATAGTGACTGGCCAG
CTCAAACTCCAATAAACC
Found at i:995451 original size:20 final size:21
Alignment explanation
Indices: 995422--995462 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
995412 TTGGATTGAT
995422 GATGATTTTG-A-TGAAAAAC
1 GATGATTTTGAAGTGAAAAAC
995441 GATGTATTTTGAAGTGAAAAAC
1 GATG-ATTTTGAAGTGAAAAAC
995463 AAGAAATTTG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 4 0.21
20 6 0.32
21 1 0.05
22 8 0.42
ACGTcount: A:0.41, C:0.05, G:0.22, T:0.32
Consensus pattern (21 bp):
GATGATTTTGAAGTGAAAAAC
Found at i:996337 original size:13 final size:13
Alignment explanation
Indices: 996319--996344 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
996309 CATTTTATGG
996319 TGTATCGATACAT
1 TGTATCGATACAT
996332 TGTATCGATACAT
1 TGTATCGATACAT
996345 ACTGTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:996453 original size:13 final size:13
Alignment explanation
Indices: 996435--996459 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
996425 ACAATGCAAC
996435 ATGTATCGATACA
1 ATGTATCGATACA
996448 ATGTATCGATAC
1 ATGTATCGATAC
996460 TGTGCAACAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:996454 original size:33 final size:33
Alignment explanation
Indices: 996417--996482 Score: 114
Period size: 33 Copynumber: 2.0 Consensus size: 33
996407 TCTTTTTCAA
996417 GTATCGATACAATGCAACATGTATCGATACAAT
1 GTATCGATACAATGCAACATGTATCGATACAAT
**
996450 GTATCGATACTGTGCAACATGTATCGATACAAT
1 GTATCGATACAATGCAACATGTATCGATACAAT
996483 TAAATGTGTA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.36, C:0.18, G:0.17, T:0.29
Consensus pattern (33 bp):
GTATCGATACAATGCAACATGTATCGATACAAT
Found at i:997393 original size:33 final size:33
Alignment explanation
Indices: 997356--997420 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 33
997346 TACAAGCCAA
* *
997356 TGTATCGATACA-ATTTTTTGTGTATCGATACAT
1 TGTATCGATACATA-CTTTGGTGTATCGATACAT
997389 TGTATCGATACATACTTTGGTGTATCGATACA
1 TGTATCGATACATACTTTGGTGTATCGATACA
997421 AGTTTGGCTA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 28 0.97
34 1 0.03
ACGTcount: A:0.28, C:0.14, G:0.17, T:0.42
Consensus pattern (33 bp):
TGTATCGATACATACTTTGGTGTATCGATACAT
Found at i:997394 original size:13 final size:13
Alignment explanation
Indices: 997376--997401 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
997366 CAATTTTTTG
997376 TGTATCGATACAT
1 TGTATCGATACAT
997389 TGTATCGATACAT
1 TGTATCGATACAT
997402 ACTTTGGTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:999995 original size:13 final size:13
Alignment explanation
Indices: 999979--1000015 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
999969 AATCCCCCTA
*
999979 TATCGATACAGTG
1 TATCGATACAATG
999992 TATCGATACAATG
1 TATCGATACAATG
*
1000005 TCTCGATACAA
1 TATCGATACAA
1000016 AGAAAAATGT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.35, C:0.19, G:0.16, T:0.30
Consensus pattern (13 bp):
TATCGATACAATG
Found at i:1006210 original size:13 final size:13
Alignment explanation
Indices: 1006192--1006217 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1006182 CAAGTTTTTG
1006192 TGTATCGATACAT
1 TGTATCGATACAT
1006205 TGTATCGATACAT
1 TGTATCGATACAT
1006218 ACTTTGGTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1006214 original size:33 final size:33
Alignment explanation
Indices: 1006172--1006236 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 33
1006162 TACAAGCCAA
* *
1006172 TGTATCGATACA-AGTTTTTGTGTATCGATACAT
1 TGTATCGATACATA-CTTTGGTGTATCGATACAT
1006205 TGTATCGATACATACTTTGGTGTATCGATACA
1 TGTATCGATACATACTTTGGTGTATCGATACA
1006237 AGTTTGGCTA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 28 0.97
34 1 0.03
ACGTcount: A:0.28, C:0.14, G:0.18, T:0.40
Consensus pattern (33 bp):
TGTATCGATACATACTTTGGTGTATCGATACAT
Found at i:1006717 original size:162 final size:162
Alignment explanation
Indices: 1006450--1006773 Score: 612
Period size: 162 Copynumber: 2.0 Consensus size: 162
1006440 CATTTTAAGC
*
1006450 CTTGAAAACAATTATACGTAACTAGAAAACATTTGGTGAATCAAAAATCATTTTGTACAAAATTT
1 CTTGAAAACAATTATACGTAACTAGAAAACATTTGGTGAATCAAAAATCATTTAGTACAAAATTT
1006515 ATAAAGTACTTAATTGAATAAAACATATTTTTGGTATTTTCAAAATAATTTCCGGTTTTATTCAA
66 ATAAAGTACTTAATTGAATAAAACATATTTTTGGTATTTTCAAAATAATTTCCGGTTTTATTCAA
*
1006580 TCCTTTGTTATATCAAAACCAAGATCTTAACA
131 TCCTTTGTTATATCAAAACCAAGATCCTAACA
* *
1006612 CTTGAAAACATTTATACTTAACTAGAAAACATTTGGTGAATCAAAAATCATTTAGTACAAAATTT
1 CTTGAAAACAATTATACGTAACTAGAAAACATTTGGTGAATCAAAAATCATTTAGTACAAAATTT
1006677 ATAAAGTACTTAATTGAATAAAACATATTTTTGGTATTTTCAAAATAATTTCCGGTTTTATTCAA
66 ATAAAGTACTTAATTGAATAAAACATATTTTTGGTATTTTCAAAATAATTTCCGGTTTTATTCAA
1006742 TCCTTTGTTATATCAAAACCAAGATCCTAACA
131 TCCTTTGTTATATCAAAACCAAGATCCTAACA
1006774 GTATCGATAC
Statistics
Matches: 158, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
162 158 1.00
ACGTcount: A:0.41, C:0.13, G:0.09, T:0.37
Consensus pattern (162 bp):
CTTGAAAACAATTATACGTAACTAGAAAACATTTGGTGAATCAAAAATCATTTAGTACAAAATTT
ATAAAGTACTTAATTGAATAAAACATATTTTTGGTATTTTCAAAATAATTTCCGGTTTTATTCAA
TCCTTTGTTATATCAAAACCAAGATCCTAACA
Found at i:1006873 original size:13 final size:13
Alignment explanation
Indices: 1006852--1006948 Score: 74
Period size: 13 Copynumber: 8.4 Consensus size: 13
1006842 CGATACATGG
*
1006852 TACAATGTATCGA
1 TACATTGTATCGA
1006865 TACATTGTATCGA
1 TACATTGTATCGA
* *
1006878 TAC-CTG-A-AGA
1 TACATTGTATCGA
1006888 -A-A-TGTATCGA
1 TACATTGTATCGA
1006898 TACATTGTATCGA
1 TACATTGTATCGA
*
1006911 TACA-TG-A-AGA
1 TACATTGTATCGA
1006921 -A-A-TGTATCGA
1 TACATTGTATCGA
1006931 TACATTGTATCGA
1 TACATTGTATCGA
1006944 TACAT
1 TACAT
1006949 GAAGAAATGT
Statistics
Matches: 67, Mismatches: 6, Indels: 22
0.71 0.06 0.23
Matches are distributed among these distances:
8 5 0.07
9 4 0.06
10 8 0.12
11 4 0.06
12 6 0.09
13 40 0.60
ACGTcount: A:0.37, C:0.14, G:0.16, T:0.32
Consensus pattern (13 bp):
TACATTGTATCGA
Found at i:1006878 original size:33 final size:32
Alignment explanation
Indices: 1006836--1006968 Score: 205
Period size: 33 Copynumber: 4.0 Consensus size: 32
1006826 CTATCACTAT
1006836 TTGTATCGATACATG-GTACAATGTATCGATACA
1 TTGTATCGATACATGAG-A-AATGTATCGATACA
*
1006869 TTGTATCGATACCTGAAGAAATGTATCGATACA
1 TTGTATCGATACATG-AGAAATGTATCGATACA
1006902 TTGTATCGATACATGAAGAAATGTATCGATACA
1 TTGTATCGATACATG-AGAAATGTATCGATACA
1006935 TTGTATCGATACATGAAGAAATGTATCGATACA
1 TTGTATCGATACATG-AGAAATGTATCGATACA
1006968 T
1 T
1006969 AGCTTGTAAC
Statistics
Matches: 96, Mismatches: 2, Indels: 4
0.94 0.02 0.04
Matches are distributed among these distances:
33 94 0.98
34 1 0.01
35 1 0.01
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.32
Consensus pattern (32 bp):
TTGTATCGATACATGAGAAATGTATCGATACA
Found at i:1006928 original size:20 final size:20
Alignment explanation
Indices: 1006870--1006968 Score: 91
Period size: 20 Copynumber: 5.7 Consensus size: 20
1006860 ATCGATACAT
*
1006870 TGTATCGATACCTGAAGAAA
1 TGTATCGATACATGAAGAAA
1006890 TGTATCGATACAT-------
1 TGTATCGATACATGAAGAAA
1006903 TGTATCGATACATGAAGAAA
1 TGTATCGATACATGAAGAAA
1006923 TGTATCGATACAT-------
1 TGTATCGATACATGAAGAAA
1006936 TGTATCGATACATGAAGAAA
1 TGTATCGATACATGAAGAAA
1006956 TGTATCGATACAT
1 TGTATCGATACAT
1006969 AGCTTGTAAC
Statistics
Matches: 64, Mismatches: 1, Indels: 28
0.69 0.01 0.30
Matches are distributed among these distances:
13 26 0.41
20 38 0.59
ACGTcount: A:0.38, C:0.13, G:0.18, T:0.30
Consensus pattern (20 bp):
TGTATCGATACATGAAGAAA
Found at i:1014979 original size:22 final size:22
Alignment explanation
Indices: 1014952--1015003 Score: 67
Period size: 19 Copynumber: 2.5 Consensus size: 22
1014942 AATTTTTACA
1014952 TAAGGGGGAGAAGATAATT-GTT
1 TAAGGGGGAGAAGAT-ATTCGTT
1014974 TAA-GGGG-G-AGATATTCGTT
1 TAAGGGGGAGAAGATATTCGTT
1014993 TAAGGGGGAGA
1 TAAGGGGGAGA
1015004 TTTTTTTTGA
Statistics
Matches: 26, Mismatches: 0, Indels: 8
0.76 0.00 0.24
Matches are distributed among these distances:
18 3 0.12
19 10 0.38
20 5 0.19
21 5 0.19
22 3 0.12
ACGTcount: A:0.33, C:0.02, G:0.40, T:0.25
Consensus pattern (22 bp):
TAAGGGGGAGAAGATATTCGTT
Found at i:1015560 original size:20 final size:20
Alignment explanation
Indices: 1015537--1015601 Score: 63
Period size: 20 Copynumber: 3.6 Consensus size: 20
1015527 CACACCCAGA
*
1015537 TGTATCGATACATGCTGCCT
1 TGTATCAATACATGCTGCCT
1015557 TGTATCAATACA-------T
1 TGTATCAATACATGCTGCCT
*
1015570 TGTATCGATACATGCTGCCT
1 TGTATCAATACATGCTGCCT
1015590 TGTATCAATACA
1 TGTATCAATACA
1015602 ATGTATCGAT
Statistics
Matches: 35, Mismatches: 3, Indels: 14
0.67 0.06 0.27
Matches are distributed among these distances:
13 12 0.34
20 23 0.66
ACGTcount: A:0.28, C:0.22, G:0.15, T:0.35
Consensus pattern (20 bp):
TGTATCAATACATGCTGCCT
Found at i:1015579 original size:33 final size:33
Alignment explanation
Indices: 1015536--1015616 Score: 153
Period size: 33 Copynumber: 2.5 Consensus size: 33
1015526 ACACACCCAG
1015536 ATGTATCGATACATGCTGCCTTGTATCAATACA
1 ATGTATCGATACATGCTGCCTTGTATCAATACA
*
1015569 TTGTATCGATACATGCTGCCTTGTATCAATACA
1 ATGTATCGATACATGCTGCCTTGTATCAATACA
1015602 ATGTATCGATACATG
1 ATGTATCGATACATG
1015617 TTCAATGTAT
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
33 46 1.00
ACGTcount: A:0.30, C:0.20, G:0.16, T:0.35
Consensus pattern (33 bp):
ATGTATCGATACATGCTGCCTTGTATCAATACA
Found at i:1015648 original size:21 final size:19
Alignment explanation
Indices: 1015599--1015656 Score: 80
Period size: 19 Copynumber: 2.9 Consensus size: 19
1015589 TTGTATCAAT
*
1015599 ACAATGTATCGATACATGT
1 ACAATGTATCGATACATGG
*
1015618 TCAATGTATCGATACATGG
1 ACAATGTATCGATACATGG
1015637 ACAAATTGTATCGATACATG
1 AC-AA-TGTATCGATACATG
1015657 AAATTGGCAG
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
19 18 0.53
20 2 0.06
21 14 0.41
ACGTcount: A:0.36, C:0.16, G:0.17, T:0.31
Consensus pattern (19 bp):
ACAATGTATCGATACATGG
Found at i:1021549 original size:55 final size:55
Alignment explanation
Indices: 1021473--1021576 Score: 181
Period size: 55 Copynumber: 1.9 Consensus size: 55
1021463 GTATGAAATT
1021473 ATGAAATGAAAGCATGAAATCCAATGCAATGCAATGACACGAATGGAATTATGAA
1 ATGAAATGAAAGCATGAAATCCAATGCAATGCAATGACACGAATGGAATTATGAA
* * *
1021528 ATGAAATGAAAGCATGGAATCCAATGCAATGCAATGACAGGTATGGAAT
1 ATGAAATGAAAGCATGAAATCCAATGCAATGCAATGACACGAATGGAAT
1021577 CCAATGCAAT
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
55 46 1.00
ACGTcount: A:0.45, C:0.12, G:0.22, T:0.20
Consensus pattern (55 bp):
ATGAAATGAAAGCATGAAATCCAATGCAATGCAATGACACGAATGGAATTATGAA
Found at i:1021693 original size:32 final size:27
Alignment explanation
Indices: 1021639--1021704 Score: 71
Period size: 30 Copynumber: 2.3 Consensus size: 27
1021629 CTAATTCAAT
1021639 TTTTTTAATTTTGATTTTATTTTATTATTA
1 TTTTTTAATTTTGATTTTATTTT-TTA--A
1021669 TTTTTTAATATATTG-TTTTAATTTTTTAA
1 TTTTTTAAT-T-TTGATTTT-ATTTTTTAA
1021698 TTTTTTA
1 TTTTTTA
1021705 TTTCTTTATT
Statistics
Matches: 33, Mismatches: 0, Indels: 7
0.82 0.00 0.17
Matches are distributed among these distances:
29 8 0.24
30 9 0.27
31 8 0.24
32 8 0.24
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.73
Consensus pattern (27 bp):
TTTTTTAATTTTGATTTTATTTTTTAA
Found at i:1022324 original size:42 final size:42
Alignment explanation
Indices: 1022250--1022930 Score: 250
Period size: 42 Copynumber: 16.1 Consensus size: 42
1022240 AAAAGGTGGA
* * ** * *
1022250 AAAGTCTCTAGGGTCAAAATCGACAAGCAGACTGAGGGTAGG
1 AAAGTCTCCAAGGTCAAAGCCGACAGGCAGACTGAGGATAGG
* * * * *
1022292 AAAGTCTCTAAGGTCAAAGTCGATAGGTAGACTTTTA-GATGAGG
1 AAAGTCTCCAAGGTCAAAGCCGACAGGCAGAC--TGAGGAT-AGG
* * * * * *
1022336 -CAGTCTCCAAGGTCACAGTCGATAGGCAAACTGATAGG-TAAG
1 AAAGTCTCCAAGGTCAAAGCCGACAGGCAGACTG--AGGATAGG
* * *
1022378 AAAGTCTCTAAGGTCAAAGCCGACAGGCAAACTTTA-GATAAGG
1 AAAGTCTCCAAGGTCAAAGCCGACAGGCAGAC-TGAGGAT-AGG
* * * * * * *
1022421 -TAGTCTCCAAGGTTAAAACCGATAAGCAGACTGAAGGGTAAG
1 AAAGTCTCCAAGGTCAAAGCCGACAGGCAGACTG-AGGATAGG
* * ** * * *
1022463 AAAGTTTCCAGGGTCAAAGTTGATAGGCAGACTAAGGATAGA
1 AAAGTCTCCAAGGTCAAAGCCGACAGGCAGACTGAGGATAGG
** * * ** *
1022505 AAAGTCTCCAAGGTCAGTGTCAACAGGTTGACTTTA-GATGAGG
1 AAAGTCTCCAAGGTCAAAGCCGACAGGCAGAC-TGAGGAT-AGG
* * * * *
1022548 -CAGTCTCC-AGAGTCAAAGCCGACAAGCAAACTGAAGGGTAAG
1 AAAGTCTCCAAG-GTCAAAGCCGACAGGCAGACTG-AGGATAGG
* * *
1022590 AAAGTCTCTAAGGTCAAAGCCGACAAGCAGACTTTA-GATGAGG
1 AAAGTCTCCAAGGTCAAAGCCGACAGGCAGAC-TGAGGAT-AGG
* * * *
1022633 -CAGTTTCCAAGGTCAAAGCCGACAGGCAAACTGAGGGTAGG
1 AAAGTCTCCAAGGTCAAAGCCGACAGGCAGACTGAGGATAGG
* ** * *
1022674 AAAGTCTCTAAGGTCAAAGCTAATAGGCAGACTTTA-GATGAGG
1 AAAGTCTCCAAGGTCAAAGCCGACAGGCAGAC-TGAGGAT-AGG
* * * * * * * *
1022717 -CAGTCTCTAGGGCCAAAGTCGGCAGACAGACTTTA-GATAAGG
1 AAAGTCTCCAAGGTCAAAGCCGACAGGCAGAC-TGAGGAT-AGG
* * *
1022759 CAA-TCTTCATGGTCAAAGCCGACAGGCAGACTGAAGG-TAGG
1 AAAGTCTCCAAGGTCAAAGCCGACAGGCAGACTG-AGGATAGG
* ** *
1022800 AAAGTCTCC-AGGATCAAAGCTGACAAACAGACTTTA-GATGAGG
1 AAAGTCTCCAAGG-TCAAAGCCGACAGGCAGAC-TGAGGAT-AGG
* * * *
1022843 -CAGTCTCCAGGGTCAAAGCCGACAGACAGACTTTA-GATGAGG
1 AAAGTCTCCAAGGTCAAAGCCGACAGGCAGAC-TGAGGAT-AGG
* ** * * * *
1022885 -CAGTCTTTAAGGTCAAAGCTGATAGGCAGACTAAGGGTAGG
1 AAAGTCTCCAAGGTCAAAGCCGACAGGCAGACTGAGGATAGG
1022926 AAAGT
1 AAAGT
1022931 TTCCTAGGCT
Statistics
Matches: 475, Mismatches: 127, Indels: 74
0.70 0.19 0.11
Matches are distributed among these distances:
41 25 0.05
42 309 0.65
43 131 0.28
44 10 0.02
ACGTcount: A:0.35, C:0.18, G:0.27, T:0.19
Consensus pattern (42 bp):
AAAGTCTCCAAGGTCAAAGCCGACAGGCAGACTGAGGATAGG
Found at i:1022349 original size:43 final size:43
Alignment explanation
Indices: 1022293--1022433 Score: 149
Period size: 43 Copynumber: 3.3 Consensus size: 43
1022283 GAGGGTAGGA
* * * *
1022293 AAGTCTCTAAGGTCAAAGTCGATAGGTAGACTTTTAGATGAGG
1 AAGTCTCCAAGGTCAAAGTCGATAGGCAAACTTTTAGATAAGG
* * ** * *
1022336 CAGTCTCCAAGGTCACAGTCGATAGGCAAACTGATAGGTAAGA
1 AAGTCTCCAAGGTCAAAGTCGATAGGCAAACTTTTAGATAAGG
* * *
1022379 AAGTCTCTAAGGTCAAAGCCGACAGGCAAAC-TTTAGATAAGG
1 AAGTCTCCAAGGTCAAAGTCGATAGGCAAACTTTTAGATAAGG
*
1022421 TAGTCTCCAAGGT
1 AAGTCTCCAAGGT
1022434 TAAAACCGAT
Statistics
Matches: 77, Mismatches: 21, Indels: 1
0.78 0.21 0.01
Matches are distributed among these distances:
42 18 0.23
43 59 0.77
ACGTcount: A:0.34, C:0.18, G:0.26, T:0.23
Consensus pattern (43 bp):
AAGTCTCCAAGGTCAAAGTCGATAGGCAAACTTTTAGATAAGG
Found at i:1022369 original size:85 final size:85
Alignment explanation
Indices: 1022252--1022495 Score: 256
Period size: 85 Copynumber: 2.9 Consensus size: 85
1022242 AAGGTGGAAA
* * * * * *
1022252 AGTCTCTAGGGTCAAAATCGACAAGCAGACTGAGGGTAGGAAAGTCTCTAAGGTCAAAGTCGATA
1 AGTCTCCAAGGTCAAAACCGATAAGCAAACTGAGGGTAAGAAAGTCTCTAAGGTCAAAGTCGATA
* *
1022317 GGTAGACTTTTAGATGAGGC
66 GGCAGACTTTTAGATAAGGC
* ** * * * *
1022337 AGTCTCCAAGGTCACAGTCGATAGGCAAACTGATAGGTAAGAAAGTCTCTAAGGTCAAAGCCGAC
1 AGTCTCCAAGGTCAAAACCGATAAGCAAACTGA-GGGTAAGAAAGTCTCTAAGGTCAAAGTCGAT
* *
1022402 AGGCAAAC-TTTAGATAAGGT
65 AGGCAGACTTTTAGATAAGGC
* * * * * *
1022422 AGTCTCCAAGGTTAAAACCGATAAGCAGACTGAAGGGTAAGAAAGTTTCCAGGGTCAAAGTTGAT
1 AGTCTCCAAGGTCAAAACCGATAAGCAAACTG-AGGGTAAGAAAGTCTCTAAGGTCAAAGTCGAT
1022487 AGGCAGACT
65 AGGCAGACT
1022496 AAGGATAGAA
Statistics
Matches: 127, Mismatches: 29, Indels: 5
0.79 0.18 0.03
Matches are distributed among these distances:
85 93 0.73
86 34 0.27
ACGTcount: A:0.35, C:0.17, G:0.27, T:0.21
Consensus pattern (85 bp):
AGTCTCCAAGGTCAAAACCGATAAGCAAACTGAGGGTAAGAAAGTCTCTAAGGTCAAAGTCGATA
GGCAGACTTTTAGATAAGGC
Found at i:1022594 original size:85 final size:83
Alignment explanation
Indices: 1022505--1022723 Score: 287
Period size: 85 Copynumber: 2.6 Consensus size: 83
1022495 TAAGGATAGA
* ** **
1022505 AAAGTCTCCAAGGTCAGTGTCAACAGGTTGACTTTAGATGAGGCAGTCTCC-AGAGTCAAAGCCG
1 AAAGTCTCTAAGGTCAAAG-CAACAGGCAGACTTTAGATGAGGCAGTCTCCAAG-GTCAAAGCCG
1022569 ACAAGCAAACTGAAGGGTAAG
64 ACAAGCAAACTG-AGGGTAAG
* * *
1022590 AAAGTCTCTAAGGTCAAAGCCGACAAGCAGACTTTAGATGAGGCAGTTTCCAAGGTCAAAGCCGA
1 AAAGTCTCTAAGGTCAAAG-CAACAGGCAGACTTTAGATGAGGCAGTCTCCAAGGTCAAAGCCGA
* *
1022655 CAGGCAAACTGAGGGTAGG
65 CAAGCAAACTGAGGGTAAG
*
1022674 AAAGTCTCTAAGGTCAAAGCTAATAGGCAGACTTTAGATGAGGCAGTCTC
1 AAAGTCTCTAAGGTCAAAGC-AACAGGCAGACTTTAGATGAGGCAGTCTC
1022724 TAGGGCCAAA
Statistics
Matches: 117, Mismatches: 15, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
83 1 0.01
84 51 0.44
85 63 0.54
86 2 0.02
ACGTcount: A:0.34, C:0.20, G:0.27, T:0.19
Consensus pattern (83 bp):
AAAGTCTCTAAGGTCAAAGCAACAGGCAGACTTTAGATGAGGCAGTCTCCAAGGTCAAAGCCGAC
AAGCAAACTGAGGGTAAG
Found at i:1022658 original size:127 final size:127
Alignment explanation
Indices: 1022378--1022664 Score: 301
Period size: 127 Copynumber: 2.3 Consensus size: 127
1022368 GATAGGTAAG
* * *
1022378 AAAGTCTCTAAGGTCAAAGCCGACAGGCAAACTTTAGATAAGGTAGTCTCCAAGGTTAAAACCGA
1 AAAGTCTCCAAGGTCAAAGCCGACAGGCAAACTTTAGATAAGGCAGTCTCCAAGGTCAAAACCGA
* * * * ** * *
1022443 TAAGCAGACTGAAGGGTAAGAAAGTTTCCAGGGTCAAAGTTGATAGGCAGACTAAGGATAGA
66 CAAGCAAACTGAAGGGTAAGAAAGTCTCCAAGGTCAAAGCCGACAAGCAGACTAAGGATAGA
** * * *** * *
1022505 AAAGTCTCCAAGGTCAGTGTCAACAGGTTGACTTTAGATGAGGCAGTCTCC-AGAGTCAAAGCCG
1 AAAGTCTCCAAGGTCAAAGCCGACAGGCAAACTTTAGATAAGGCAGTCTCCAAG-GTCAAAACCG
* *
1022569 ACAAGCAAACTGAAGGGTAAGAAAGTCTCTAAGGTCAAAGCCGACAAGCAGACTTTA-GAT-GA
65 ACAAGCAAACTGAAGGGTAAGAAAGTCTCCAAGGTCAAAGCCGACAAGCAGAC-TAAGGATAGA
** *
1022631 GGCAGTTTCCAAGGTCAAAGCCGACAGGCAAACT
1 -AAAGTCTCCAAGGTCAAAGCCGACAGGCAAACT
1022665 GAGGGTAGGA
Statistics
Matches: 125, Mismatches: 32, Indels: 6
0.77 0.20 0.04
Matches are distributed among these distances:
126 4 0.03
127 119 0.95
128 2 0.02
ACGTcount: A:0.37, C:0.19, G:0.26, T:0.19
Consensus pattern (127 bp):
AAAGTCTCCAAGGTCAAAGCCGACAGGCAAACTTTAGATAAGGCAGTCTCCAAGGTCAAAACCGA
CAAGCAAACTGAAGGGTAAGAAAGTCTCCAAGGTCAAAGCCGACAAGCAGACTAAGGATAGA
Found at i:1022734 original size:84 final size:85
Alignment explanation
Indices: 1022534--1022734 Score: 296
Period size: 84 Copynumber: 2.4 Consensus size: 85
1022524 TCAACAGGTT
*
1022534 GACTTTAGATGAGGCAGTCTCCAGAGTCAAAGCCGACAAGCAAACTGAAGGGTAAGAAAGTCTCT
1 GACTTTAGATGAGGCAGTCTCCAGGGTCAAAGCCGACAAGCAAACTGAAGGGTAAGAAAGTCTCT
*
1022599 AAGGTCAAAGCCGACAAGCA
66 AAGGTCAAAGCCAACAAGCA
* * * *
1022619 GACTTTAGATGAGGCAGTTTCCAAGGTCAAAGCCGACAGGCAAACTG-AGGGTAGGAAAGTCTCT
1 GACTTTAGATGAGGCAGTCTCCAGGGTCAAAGCCGACAAGCAAACTGAAGGGTAAGAAAGTCTCT
* * *
1022683 AAGGTCAAAGCTAATAGGCA
66 AAGGTCAAAGCCAACAAGCA
* *
1022703 GACTTTAGATGAGGCAGTCTCTAGGGCCAAAG
1 GACTTTAGATGAGGCAGTCTCCAGGGTCAAAG
1022735 TCGGCAGACA
Statistics
Matches: 103, Mismatches: 13, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
84 60 0.58
85 43 0.42
ACGTcount: A:0.35, C:0.19, G:0.28, T:0.18
Consensus pattern (85 bp):
GACTTTAGATGAGGCAGTCTCCAGGGTCAAAGCCGACAAGCAAACTGAAGGGTAAGAAAGTCTCT
AAGGTCAAAGCCAACAAGCA
Found at i:1022760 original size:126 final size:126
Alignment explanation
Indices: 1022604--1022930 Score: 444
Period size: 126 Copynumber: 2.6 Consensus size: 126
1022594 TCTCTAAGGT
*
1022604 CAAAGCCGACA-AGCAGACTTTAGATGAGGCAGT-TTCCAAGGTCAAAGCCGACAGGCAAACTGA
1 CAAAGCCGACAGA-CAGACTTTAGATGAGGCAGTCTT-CAAGGTCAAAGCCGACAGGCAGACTGA
* ** *
1022667 GGGTAGGAAAGTCTCTAAGG-TCAAAGCTAATAGGCAGACTTTAGATGAGGCAGTCTCTAGGGC
64 GGGTAGGAAAGTCTC-AAGGATCAAAGCTAACAAACAGACTTTAGATGAGGCAGTCTCCAGGGC
* * * * * *
1022730 CAAAGTCGGCAGACAGACTTTAGATAAGGCAATCTTCATGGTCAAAGCCGACAGGCAGACTGAAG
1 CAAAGCCGACAGACAGACTTTAGATGAGGCAGTCTTCAAGGTCAAAGCCGACAGGCAGACTGAGG
* * *
1022795 GTAGGAAAGTCTCCAGGATCAAAGCTGACAAACAGACTTTAGATGAGGCAGTCTCCAGGGT
66 GTAGGAAAGTCTCAAGGATCAAAGCTAACAAACAGACTTTAGATGAGGCAGTCTCCAGGGC
* * * *
1022856 CAAAGCCGACAGACAGACTTTAGATGAGGCAGTCTTTAAGGTCAAAGCTGATAGGCAGACTAAGG
1 CAAAGCCGACAGACAGACTTTAGATGAGGCAGTCTTCAAGGTCAAAGCCGACAGGCAGACTGAGG
1022921 GTAGGAAAGT
66 GTAGGAAAGT
1022931 TTCCTAGGCT
Statistics
Matches: 174, Mismatches: 24, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
125 3 0.02
126 168 0.97
127 3 0.02
ACGTcount: A:0.34, C:0.19, G:0.28, T:0.18
Consensus pattern (126 bp):
CAAAGCCGACAGACAGACTTTAGATGAGGCAGTCTTCAAGGTCAAAGCCGACAGGCAGACTGAGG
GTAGGAAAGTCTCAAGGATCAAAGCTAACAAACAGACTTTAGATGAGGCAGTCTCCAGGGC
Found at i:1024290 original size:14 final size:14
Alignment explanation
Indices: 1024281--1024326 Score: 58
Period size: 14 Copynumber: 3.4 Consensus size: 14
1024271 AATTTTTTTC
1024281 TTTTTCTTTTTTAT
1 TTTTTCTTTTTTAT
*
1024295 TTTTTCTTTTTAAT
1 TTTTTCTTTTTTAT
* *
1024309 TTTAT-TTTTTTCT
1 TTTTTCTTTTTTAT
1024322 TTTTT
1 TTTTT
1024327 TATGCATAAC
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
13 10 0.37
14 17 0.63
ACGTcount: A:0.09, C:0.07, G:0.00, T:0.85
Consensus pattern (14 bp):
TTTTTCTTTTTTAT
Found at i:1024297 original size:20 final size:20
Alignment explanation
Indices: 1024272--1024325 Score: 74
Period size: 20 Copynumber: 2.7 Consensus size: 20
1024262 TTTTCATTCA
*
1024272 ATTTTTTTCTTTTT-CTTTT
1 ATTTTTTTCTTTTTAATTTT
*
1024291 TTATTTTTTCTTTTTAATTTT
1 AT-TTTTTTCTTTTTAATTTT
1024312 ATTTTTTTCTTTTT
1 ATTTTTTTCTTTTT
1024326 TTATGCATAA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
19 1 0.03
20 24 0.80
21 5 0.17
ACGTcount: A:0.09, C:0.07, G:0.00, T:0.83
Consensus pattern (20 bp):
ATTTTTTTCTTTTTAATTTT
Found at i:1039546 original size:1 final size:1
Alignment explanation
Indices: 1039540--1039593 Score: 54
Period size: 1 Copynumber: 54.0 Consensus size: 1
1039530 AAATCTTCAC
* * * ***
1039540 TTTTTTTTTTGTTTTTTTTTGTTTTTTCTTTTTTTTTTTACCTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1039594 ACAATTGCCA
Statistics
Matches: 44, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
1 44 1.00
ACGTcount: A:0.02, C:0.06, G:0.04, T:0.89
Consensus pattern (1 bp):
T
Found at i:1039556 original size:10 final size:10
Alignment explanation
Indices: 1039541--1039578 Score: 60
Period size: 10 Copynumber: 3.8 Consensus size: 10
1039531 AATCTTCACT
1039541 TTTTTTTTTG
1 TTTTTTTTTG
1039551 TTTTTTTTTG
1 TTTTTTTTTG
1039561 TTTTTTCTTT-
1 TTTTTT-TTTG
1039571 TTTTTTTT
1 TTTTTTTT
1039579 ACCTTTTTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
9 2 0.07
10 22 0.81
11 3 0.11
ACGTcount: A:0.00, C:0.03, G:0.05, T:0.92
Consensus pattern (10 bp):
TTTTTTTTTG
Found at i:1039566 original size:17 final size:16
Alignment explanation
Indices: 1039540--1039578 Score: 60
Period size: 17 Copynumber: 2.4 Consensus size: 16
1039530 AAATCTTCAC
*
1039540 TTTTTTTTTTGTTTTT
1 TTTTTTTTTTCTTTTT
1039556 TTTTGTTTTTTCTTTTT
1 TTTT-TTTTTTCTTTTT
1039573 TTTTTT
1 TTTTTT
1039579 ACCTTTTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 6 0.29
17 15 0.71
ACGTcount: A:0.00, C:0.03, G:0.05, T:0.92
Consensus pattern (16 bp):
TTTTTTTTTTCTTTTT
Found at i:1048316 original size:55 final size:55
Alignment explanation
Indices: 1048237--1048340 Score: 190
Period size: 55 Copynumber: 1.9 Consensus size: 55
1048227 GTATGAAATT
*
1048237 ATGAAATGAAAGCATGAAATCCAATGCAATGCAATGACATGTATGGAATTATGAA
1 ATGAAATGAAAGCATGAAATCCAATGCAATGCAATGACATATATGGAATTATGAA
*
1048292 ATGAAATGAAAGCATGGAATCCAATGCAATGCAATGACATATATGGAAT
1 ATGAAATGAAAGCATGAAATCCAATGCAATGCAATGACATATATGGAAT
1048341 CCAATGCAAT
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
55 47 1.00
ACGTcount: A:0.45, C:0.12, G:0.20, T:0.23
Consensus pattern (55 bp):
ATGAAATGAAAGCATGAAATCCAATGCAATGCAATGACATATATGGAATTATGAA
Found at i:1048317 original size:50 final size:50
Alignment explanation
Indices: 1048223--1048336 Score: 129
Period size: 55 Copynumber: 2.2 Consensus size: 50
1048213 ATGAGTGAGC
* * *
1048223 ACATGTATGAAATTATGAAATGAAAGCATGAAATCCAATGCAATGCAATG
1 ACATGTATGAAATTATGAAATGAAAGAAAGAAATCCAATCCAATGCAATG
* *
1048273 ACATGTATGGAATTATGAAATGAAATGAAAGCATGGAATCCAATGCAATGCAATG
1 ACATGTATGAAATTATGAAATGAAA-GAAAG-A---AATCCAATCCAATGCAATG
*
1048328 ACATATATG
1 ACATGTATG
1048337 GAATCCAATG
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
50 24 0.44
51 3 0.05
52 1 0.02
55 27 0.49
ACGTcount: A:0.45, C:0.11, G:0.19, T:0.25
Consensus pattern (50 bp):
ACATGTATGAAATTATGAAATGAAAGAAAGAAATCCAATCCAATGCAATG
Found at i:1048450 original size:12 final size:11
Alignment explanation
Indices: 1048423--1048494 Score: 60
Period size: 12 Copynumber: 6.5 Consensus size: 11
1048413 AATTTTGATT
*
1048423 TTATTTTTTTA
1 TTATTTTTTAA
1048434 TTATTTTTTAA
1 TTATTTTTTAA
1048445 TATATTTTTTAA
1 T-TATTTTTTAA
*
1048457 --ATTTTTAAA
1 TTATTTTTTAA
*
1048466 TT-TTTATTTAT
1 TTATTT-TTTAA
*
1048477 TTATTTATTTAT
1 TTATTT-TTTAA
1048489 TTATTT
1 TTATTT
1048495 CTATTATTAA
Statistics
Matches: 52, Mismatches: 4, Indels: 9
0.80 0.06 0.14
Matches are distributed among these distances:
9 8 0.15
10 3 0.06
11 16 0.31
12 25 0.48
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (11 bp):
TTATTTTTTAA
Found at i:1048460 original size:21 final size:20
Alignment explanation
Indices: 1048405--1048462 Score: 55
Period size: 21 Copynumber: 2.8 Consensus size: 20
1048395 TATTAATTTA
*
1048405 ATTTTTTAAATTTTGATTTTAT
1 ATTTTTTAAATTTT--TTATAT
*
1048427 -TTTTTTATTATTTTTTAATAT
1 ATTTTTTA-AATTTTTT-ATAT
1048448 ATTTTTTAAATTTTT
1 ATTTTTTAAATTTTT
1048463 AAATTTTTAT
Statistics
Matches: 30, Mismatches: 3, Indels: 7
0.75 0.08 0.17
Matches are distributed among these distances:
20 2 0.07
21 16 0.53
22 12 0.40
ACGTcount: A:0.26, C:0.00, G:0.02, T:0.72
Consensus pattern (20 bp):
ATTTTTTAAATTTTTTATAT
Found at i:1048475 original size:20 final size:20
Alignment explanation
Indices: 1048405--1048464 Score: 57
Period size: 20 Copynumber: 2.9 Consensus size: 20
1048395 TATTAATTTA
* * *
1048405 ATTTTTTAAATTTTGATTTT
1 ATTTTTTAAATTTTTAATAT
*
1048425 ATTTTTTTATTATTTTTTAATAT
1 A-TTTTTTA--AATTTTTAATAT
1048448 ATTTTTTAAATTTTTAA
1 ATTTTTTAAATTTTTAA
1048465 ATTTTTATTT
Statistics
Matches: 32, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
20 9 0.28
21 7 0.22
22 7 0.22
23 9 0.28
ACGTcount: A:0.28, C:0.00, G:0.02, T:0.70
Consensus pattern (20 bp):
ATTTTTTAAATTTTTAATAT
Found at i:1048477 original size:4 final size:4
Alignment explanation
Indices: 1048468--1048494 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
1048458 TTTTTAAATT
1048468 TTTA TTTA TTTA TTTA TTTA TTTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTT
1048495 CTATTATTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (4 bp):
TTTA
Found at i:1048481 original size:43 final size:44
Alignment explanation
Indices: 1048405--1048487 Score: 107
Period size: 43 Copynumber: 1.9 Consensus size: 44
1048395 TATTAATTTA
** *
1048405 ATTTTTTAAATTTTGATTTTATTTTTTTATTATTT-TTTAATAT
1 ATTTTTTAAATTTTGAAATTATTTATTTATTATTTATTTAATAT
*
1048448 ATTTTTTAAATTTTTAAATT-TTTATTTATTTATTTATTTA
1 ATTTTTTAAATTTTGAAATTATTTATTTA-TTATTTATTTA
1048488 TTTATTTCTA
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
42 7 0.21
43 23 0.68
44 4 0.12
ACGTcount: A:0.28, C:0.00, G:0.01, T:0.71
Consensus pattern (44 bp):
ATTTTTTAAATTTTGAAATTATTTATTTATTATTTATTTAATAT
Found at i:1050571 original size:22 final size:22
Alignment explanation
Indices: 1050546--1050602 Score: 96
Period size: 22 Copynumber: 2.6 Consensus size: 22
1050536 TTTTACTATT
*
1050546 CATCACTGTTCATGTATCGATA
1 CATCACTGTTCATGTATCAATA
1050568 CATCACTGTTCATGTATCAATA
1 CATCACTGTTCATGTATCAATA
*
1050590 CATCACTGCTCAT
1 CATCACTGTTCAT
1050603 AACTATACAT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
22 33 1.00
ACGTcount: A:0.28, C:0.26, G:0.11, T:0.35
Consensus pattern (22 bp):
CATCACTGTTCATGTATCAATA
Found at i:1051102 original size:36 final size:33
Alignment explanation
Indices: 1051041--1051127 Score: 95
Period size: 36 Copynumber: 2.6 Consensus size: 33
1051031 TTAAGTGATT
****
1051041 GAGAGGTTCTATCTTAGTTTTTGAAAAAGATAGAG
1 GAGAGGTTCTATCTTAGCCCGTG-AAAAGATA-AG
1051076 AGAGAGGTTCTATCTTAGCCCGTGAAAAGATAAG
1 -GAGAGGTTCTATCTTAGCCCGTGAAAAGATAAG
*
1051110 GA-AGTTTCTATCTTAGCC
1 GAGAGGTTCTATCTTAGCC
1051128 TTGAAAGATG
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
32 15 0.33
33 2 0.04
34 2 0.04
35 8 0.17
36 19 0.41
ACGTcount: A:0.32, C:0.13, G:0.24, T:0.31
Consensus pattern (33 bp):
GAGAGGTTCTATCTTAGCCCGTGAAAAGATAAG
Found at i:1052765 original size:21 final size:21
Alignment explanation
Indices: 1052723--1052781 Score: 70
Period size: 21 Copynumber: 2.8 Consensus size: 21
1052713 GAACTAGAGG
1052723 AGAAAATGAATGAGTTAGAAA
1 AGAAAATGAATGAGTTAGAAA
1052744 AGAAAA-GAAATGAGTT-GCAAA
1 AGAAAATG-AATGAGTTAG-AAA
1052765 ATGAAAATG-ATGAGTTA
1 A-GAAAATGAATGAGTTA
1052782 ACTAATAAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 9
0.79 0.00 0.21
Matches are distributed among these distances:
20 2 0.06
21 25 0.76
22 5 0.15
23 1 0.03
ACGTcount: A:0.54, C:0.02, G:0.24, T:0.20
Consensus pattern (21 bp):
AGAAAATGAATGAGTTAGAAA
Found at i:1054265 original size:13 final size:13
Alignment explanation
Indices: 1054244--1054282 Score: 60
Period size: 13 Copynumber: 3.0 Consensus size: 13
1054234 AAGAAATTTA
1054244 TATCGATACATTG
1 TATCGATACATTG
* *
1054257 TATCAATACAATG
1 TATCGATACATTG
1054270 TATCGATACATTG
1 TATCGATACATTG
1054283 CTTTACTATG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.36, C:0.15, G:0.13, T:0.36
Consensus pattern (13 bp):
TATCGATACATTG
Found at i:1054449 original size:18 final size:17
Alignment explanation
Indices: 1054418--1054452 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
1054408 GCCACTCATT
1054418 AATCTTTCAACAATTGG
1 AATCTTTCAACAATTGG
*
1054435 AATCATTTCATCAATTGG
1 AATC-TTTCAACAATTGG
1054453 CAACAATTGG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.34, C:0.17, G:0.11, T:0.37
Consensus pattern (17 bp):
AATCTTTCAACAATTGG
Found at i:1056192 original size:22 final size:22
Alignment explanation
Indices: 1056167--1056223 Score: 105
Period size: 22 Copynumber: 2.6 Consensus size: 22
1056157 TTTCACTGTT
1056167 CATCACTGTTCATGTATCGATA
1 CATCACTGTTCATGTATCGATA
*
1056189 CATCATTGTTCATGTATCGATA
1 CATCACTGTTCATGTATCGATA
1056211 CATCACTGTTCAT
1 CATCACTGTTCAT
1056224 CACTATACAA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
22 33 1.00
ACGTcount: A:0.26, C:0.23, G:0.12, T:0.39
Consensus pattern (22 bp):
CATCACTGTTCATGTATCGATA
Found at i:1060107 original size:16 final size:16
Alignment explanation
Indices: 1060088--1060119 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
1060078 GCAACGCTTG
1060088 CTTTGAGCATAATGAT
1 CTTTGAGCATAATGAT
1060104 CTTTGAGCATAATGAT
1 CTTTGAGCATAATGAT
1060120 AATGACGAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.31, C:0.12, G:0.19, T:0.38
Consensus pattern (16 bp):
CTTTGAGCATAATGAT
Found at i:1061897 original size:13 final size:13
Alignment explanation
Indices: 1061879--1061903 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1061869 ATATTGCTTA
1061879 GTATCGATACATT
1 GTATCGATACATT
1061892 GTATCGATACAT
1 GTATCGATACAT
1061904 GTTCATAGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
GTATCGATACATT
Found at i:1061986 original size:13 final size:13
Alignment explanation
Indices: 1061968--1062007 Score: 62
Period size: 13 Copynumber: 3.1 Consensus size: 13
1061958 TAAACTCACT
1061968 TAGTATCGATACA
1 TAGTATCGATACA
*
1061981 TAGTATTGATACA
1 TAGTATCGATACA
*
1061994 TTGTATCGATACA
1 TAGTATCGATACA
1062007 T
1 T
1062008 GGTGAATTAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.35, C:0.12, G:0.15, T:0.38
Consensus pattern (13 bp):
TAGTATCGATACA
Found at i:1063117 original size:106 final size:106
Alignment explanation
Indices: 1062851--1063447 Score: 633
Period size: 106 Copynumber: 5.6 Consensus size: 106
1062841 AAAATTTCAA
* * * *
1062851 AACCCCATTGTTCATAAAAAAAACTCAAATTTCCTCTTTATTCCTAAATATTTTCATAATTTTAT
1 AACCCTATTCTTCAT-AAAAAAACTCAAATTTCCTTTTTGTTCCTAAATATTTTCATAATTTTAT
* *
1062916 CTTTAGGAAGACTCCAACCCCA-TA-TCT-AAGAGGATACTCT
65 CTTTAGGGAGACTCCAACCCCACTACTCTAAAG-GGATACTCC
* *
1062956 AA-CCTCATT-TTCTATAAAAAAACTCAAGTTTCCTCTTTGTTCCTAAATATTTTCATAATTTTA
1 AACCCT-ATTCTTC-ATAAAAAAACTCAAATTTCCTTTTTGTTCCTAAATATTTTCATAATTTTA
* *
1063019 TCTTTAGGGAGACTCCAACTCTACTACTCTAAAGGGATACTCC
64 TCTTTAGGGAGACTCCAACCCCACTACTCTAAAGGGATACTCC
* * * *
1063062 AACCCTATTCTACGTAAAAAAACTCAAATTTCCTTTTTGTTCCAAAATATTTTCATAATATTATC
1 AACCCTATTCTTCATAAAAAAACTCAAATTTCCTTTTTGTTCCTAAATATTTTCATAATTTTATC
** * * *
1063127 TTT-GGAGAGACTTTAACCCTACTACTTTGAAGGGATACGT-C
66 TTTAGG-GAGACTCCAACCCCACTACTCTAAAGGGATAC-TCC
1063168 AA-CCTAAGTTCTTCATAAAAAAAAAACTCAAATTTCCTTTTTGTTCCTAAATATTTT-ATAATT
1 AACCCT-A-TTCTTCAT---AAAAAAACTCAAATTTCCTTTTTGTTCCTAAATATTTTCATAATT
* * * ** * *
1063231 TTGTCTATAGGGAAACTCCAACCCCACTACTCTAGGGGGATATTCT
61 TTATCTTTAGGGAGACTCCAACCCCACTACTCTAAAGGGATACTCC
* * * **
1063277 AACCCCATTCTTCATAAAACAACTCAAATTTTCTTTTCATTCCTAAATATTTTCATAATTTTATC
1 AACCCTATTCTTCATAAAAAAACTCAAATTTCCTTTTTGTTCCTAAATATTTTCATAATTTTATC
* * * *
1063342 TTT-GGAGAAACTCCAACCCCACTACTATGAAGGTATACTCC
66 TTTAGG-GAGACTCCAACCCCACTACTCTAAAGGGATACTCC
** * *
1063383 AACCCCGTTCTTCATAAAAAAACTCAAATCTT-CTCTTTT-TTCTTAAATATTGTCATAATTTTA
1 AACCCTATTCTTCATAAAAAAACTCAAAT-TTCCT-TTTTGTTCCTAAATATTTTCATAATTTTA
1063446 TC
64 TC
1063448 CCTGAGGATA
Statistics
Matches: 418, Mismatches: 53, Indels: 41
0.82 0.10 0.08
Matches are distributed among these distances:
104 71 0.17
105 50 0.12
106 190 0.45
107 20 0.05
108 9 0.02
109 37 0.09
110 41 0.10
ACGTcount: A:0.33, C:0.22, G:0.08, T:0.37
Consensus pattern (106 bp):
AACCCTATTCTTCATAAAAAAACTCAAATTTCCTTTTTGTTCCTAAATATTTTCATAATTTTATC
TTTAGGGAGACTCCAACCCCACTACTCTAAAGGGATACTCC
Found at i:1063305 original size:215 final size:212
Alignment explanation
Indices: 1062851--1063447 Score: 703
Period size: 215 Copynumber: 2.8 Consensus size: 212
1062841 AAAATTTCAA
* *
1062851 AACCCCATTGTTCATAAAAAAAACTCAAATTTCCTCTTTATTCCTAAATATTTTCATAATTTTAT
1 AACCCCATTCTTCAT-AAAAAAACTCAAATTTCCTTTTTATTCCTAAATATTTTCATAATTTTAT
*
1062916 CTTTAGGA-AGACTCCAACCCCA-TA-TCT-AAGAGGATACTCTAACCTCA-TT-TTC-TATAAA
65 CTTT-GGAGAGACTCCAACCCCACTACTATGAAG-GGATACTC-AACCTCAGTTCTTCATA-AAA
* * * * *
1062974 AAAACTCAAGTTTCCTCTTTGTTCCTAAATATTTTCATAATTTTATCTTTAGGGAGACTCCAACT
126 AAAACTCAAATTTCCTTTTTGTTCCTAAATATTTT-ATAATTTTATCTATAGGGAAACTCCAACC
*
1063039 CTACTACTCTAAAGGGATACTCC
190 CCACTACTCTAAAGGGATACTCC
* * * * * *
1063062 AACCCTATTCTACGTAAAAAAACTCAAATTTCCTTTTTGTTCCAAAATATTTTCATAATATTATC
1 AACCCCATTCTTCATAAAAAAACTCAAATTTCCTTTTTATTCCTAAATATTTTCATAATTTTATC
** * * *
1063127 TTTGGAGAGACTTTAACCCTACTACTTTGAAGGGATACGTCAACCTAAGTTCTTCATAAAAAAAA
66 TTTGGAGAGACTCCAACCCCACTACTATGAAGGGATAC-TCAACCTCAGTTCTTCAT--AAAAAA
*
1063192 AACTCAAATTTCCTTTTTGTTCCTAAATATTTTATAATTTTGTCTATAGGGAAACTCCAACCCCA
128 AACTCAAATTTCCTTTTTGTTCCTAAATATTTTATAATTTTATCTATAGGGAAACTCCAACCCCA
** * *
1063257 CTACTCTAGGGGGATATTCT
193 CTACTCTAAAGGGATACTCC
* * *
1063277 AACCCCATTCTTCATAAAACAACTCAAATTTTCTTTTCATTCCTAAATATTTTCATAATTTTATC
1 AACCCCATTCTTCATAAAAAAACTCAAATTTCCTTTTTATTCCTAAATATTTTCATAATTTTATC
* * *
1063342 TTTGGAGAAACTCCAACCCCACTACTATGAAGGTATACTCCAACC-CCGTTCTTCAT-AAAAAAA
66 TTTGGAGAGACTCCAACCCCACTACTATGAAGGGATACT-CAACCTCAGTTCTTCATAAAAAAAA
* *
1063405 CTCAAATCTT-CTCTTTT-TTCTTAAATATTGTCATAATTTTATC
130 CTCAAAT-TTCCT-TTTTGTTCCTAAATATT-TTATAATTTTATC
1063448 CCTGAGGATA
Statistics
Matches: 328, Mismatches: 44, Indels: 27
0.82 0.11 0.07
Matches are distributed among these distances:
209 3 0.01
210 60 0.18
211 40 0.12
212 31 0.09
213 7 0.02
214 13 0.04
215 137 0.42
216 36 0.11
217 1 0.00
ACGTcount: A:0.33, C:0.22, G:0.08, T:0.37
Consensus pattern (212 bp):
AACCCCATTCTTCATAAAAAAACTCAAATTTCCTTTTTATTCCTAAATATTTTCATAATTTTATC
TTTGGAGAGACTCCAACCCCACTACTATGAAGGGATACTCAACCTCAGTTCTTCATAAAAAAAAC
TCAAATTTCCTTTTTGTTCCTAAATATTTTATAATTTTATCTATAGGGAAACTCCAACCCCACTA
CTCTAAAGGGATACTCC
Found at i:1063511 original size:321 final size:320
Alignment explanation
Indices: 1062866--1063485 Score: 754
Period size: 321 Copynumber: 1.9 Consensus size: 320
1062856 CATTGTTCAT
*
1062866 AAAAAAAACTCAAATTTCCTCTTTATTCCTAAATATTTTCATAATTTTATCTTTAGGAAGACTCC
1 AAAAAAAACTCAAATTTCCTCTTTATTCCTAAATATTTTCATAATTTTATCTATAGGAAGACTCC
* * *
1062931 AACCCCATATCTAAGAGGATACTCTAACCTCATTTTCTATAAAAAAACTCAAGTTTCCTCTTTGT
66 AACCCCATATCTAAGAGGATACTCTAACCCCATTTTCTATAAAAAAACTCAAATTTCCTCTTTAT
* * * *
1062996 TCCTAAATATTTTCATAATTTTATCTTTAGGGAGACTCCAACTCTACTACTCTAAAGGGATACTC
131 TCCTAAATATTTTCATAATTTTATCTTTAGGGAAACTCCAACCCCACTACTATAAAGGGATACTC
* * *
1063061 CAACCCTATTCTACGTAAAAAAACTCAAATTTCCTTTTTGTTCCAAAATATTTTCATAATATTAT
196 CAACCCCATTCTACATAAAAAAACTCAAATTTCCTTTTTGTTCCAAAATATTGTCATAATATTAT
** *** ***
1063126 CTTTGGAGAGACTTTAACCCTACTACTTTGAAGGGATACGTCAACCTAAGTTCTTCATAA
261 CCCTGGAGAGACCCCAACCCTACTACTCCAAAGGGATACGTCAACCTAAGTTCTTCATAA
* * *
1063186 AAAAAAAACTCAAATTTCCTTTTTGTTCCTAAATATTTT-ATAATTTTGTCTATAGGGAA-ACTC
1 AAAAAAAACTCAAATTTCCTCTTTATTCCTAAATATTTTCATAATTTTATCTATA-GGAAGACTC
* * * * *
1063249 CAACCCCACTACTCTAGGGGGATATTCTAACCCCATTCTTC-ATAAAACAACTCAAATTTTCT-T
65 CAACCCCA-TA-TCTAAGAGGATACTCTAACCCCATT-TTCTATAAAAAAACTCAAATTTCCTCT
* *
1063312 TTCATTCCTAAATATTTTCATAATTTTATCTTT-GGAGAAACTCCAACCCCACTACTATGAAGGT
127 TT-ATTCCTAAATATTTTCATAATTTTATCTTTAGG-GAAACTCCAACCCCACTACTATAAAGGG
* * **
1063376 ATACTCCAACCCCGTTCTTCATAAAAAAACTCAAATCTT-CTCTTTT-TTCTTAAATATTGTCAT
190 ATACTCCAACCCCATTCTACATAAAAAAACTCAAAT-TTCCT-TTTTGTTCCAAAATATTGTCAT
* * * *
1063439 AATTTTATCCCT-GAGGATACCCCAACTCC-ACTTCTCCAAAGTGATAC
253 AATATTATCCCTGGA-GAGACCCCAAC-CCTACTACTCCAAAGGGATAC
1063486 TTCAGCCCCG
Statistics
Matches: 253, Mismatches: 37, Indels: 19
0.82 0.12 0.06
Matches are distributed among these distances:
319 25 0.10
320 50 0.20
321 167 0.66
322 11 0.04
ACGTcount: A:0.33, C:0.23, G:0.08, T:0.36
Consensus pattern (320 bp):
AAAAAAAACTCAAATTTCCTCTTTATTCCTAAATATTTTCATAATTTTATCTATAGGAAGACTCC
AACCCCATATCTAAGAGGATACTCTAACCCCATTTTCTATAAAAAAACTCAAATTTCCTCTTTAT
TCCTAAATATTTTCATAATTTTATCTTTAGGGAAACTCCAACCCCACTACTATAAAGGGATACTC
CAACCCCATTCTACATAAAAAAACTCAAATTTCCTTTTTGTTCCAAAATATTGTCATAATATTAT
CCCTGGAGAGACCCCAACCCTACTACTCCAAAGGGATACGTCAACCTAAGTTCTTCATAA
Found at i:1064478 original size:24 final size:24
Alignment explanation
Indices: 1064434--1064479 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
1064424 TGATGACAAA
* *
1064434 ATTAAAAGTTAAAAATGATTTATT
1 ATTAAAAGTCAAAAATAATTTATT
1064458 ATTAAAA-TCAAAAATTAATTTA
1 ATTAAAAGTCAAAAA-TAATTTA
1064480 GAAAATCAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 6 0.32
24 13 0.68
ACGTcount: A:0.54, C:0.02, G:0.04, T:0.39
Consensus pattern (24 bp):
ATTAAAAGTCAAAAATAATTTATT
Found at i:1064503 original size:20 final size:20
Alignment explanation
Indices: 1064461--1064504 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
1064451 ATTTATTATT
**
1064461 AAAATCAAAAATTAATTTAG
1 AAAATCAAAAAAAAATTTAG
1064481 AAAATCAAAATAAAAATTT-G
1 AAAATCAAAA-AAAAATTTAG
1064501 AAAA
1 AAAA
1064505 ATAATTTTGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 15 0.71
21 6 0.29
ACGTcount: A:0.66, C:0.05, G:0.05, T:0.25
Consensus pattern (20 bp):
AAAATCAAAAAAAAATTTAG
Found at i:1065501 original size:23 final size:23
Alignment explanation
Indices: 1065454--1065504 Score: 77
Period size: 23 Copynumber: 2.2 Consensus size: 23
1065444 GAAAAAAAAT
*
1065454 AATAATAAATAAATTTGCACGAA
1 AATAATAAATAAATTTGCACAAA
1065477 AATAATAAATAAATTTGGC-CAAA
1 AATAATAAATAAATTT-GCACAAA
1065500 AATAA
1 AATAA
1065505 ACACACAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
23 24 0.92
24 2 0.08
ACGTcount: A:0.59, C:0.08, G:0.08, T:0.25
Consensus pattern (23 bp):
AATAATAAATAAATTTGCACAAA
Found at i:1065982 original size:92 final size:91
Alignment explanation
Indices: 1065832--1066007 Score: 316
Period size: 92 Copynumber: 1.9 Consensus size: 91
1065822 TGAAAATCGG
* *
1065832 GGTTGGAGTATCCTCTTAGAAATGTGGGTTAGATTACCCCTAAAAATGACAATTTGATATTTTCA
1 GGTTGGACTATCCTCTTAGAAATGTGGGTTAGATTACCCCCAAAAATGACAATTTGATATTTTCA
1065897 TAAATCAAATTTTAGTGCACAAACGA
66 TAAATCAAATTTTAGTGCACAAACGA
*
1065923 GGTTGGACTATCCTTTTAGAAATGTGGTGTTAGATTACCCCCAAAAATGACAATTTGATATTTTC
1 GGTTGGACTATCCTCTTAGAAATGTGG-GTTAGATTACCCCCAAAAATGACAATTTGATATTTTC
1065988 ATAAATCAAATTTTAGTGCA
65 ATAAATCAAATTTTAGTGCA
1066008 AAGATAGGGT
Statistics
Matches: 81, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
91 25 0.31
92 56 0.69
ACGTcount: A:0.34, C:0.14, G:0.17, T:0.35
Consensus pattern (91 bp):
GGTTGGACTATCCTCTTAGAAATGTGGGTTAGATTACCCCCAAAAATGACAATTTGATATTTTCA
TAAATCAAATTTTAGTGCACAAACGA
Found at i:1066019 original size:92 final size:90
Alignment explanation
Indices: 1065831--1066027 Score: 315
Period size: 92 Copynumber: 2.2 Consensus size: 90
1065821 ATGAAAATCG
* *
1065831 GGGTTGGAGTATCCTCTTAGAAATGTGGGTTAGATTACCCCTAAAAATGACAATTTGATATTTTC
1 GGGTTGGACTATCCTCTTAGAAATGTGGGTTAGATTACCCCCAAAAATGACAATTTGATATTTTC
*
1065896 ATAAATCAAATTTTAGTGCACAAAC
66 ATAAATCAAATTTTAGTGCACAAAA
*
1065921 GAGGTTGGACTATCCTTTTAGAAATGTGGTGTTAGATTACCCCCAAAAATGACAATTTGATATTT
1 G-GGTTGGACTATCCTCTTAGAAATGTGG-GTTAGATTACCCCCAAAAATGACAATTTGATATTT
1065986 TCATAAATCAAATTTTAGTGCA-AAGATA
64 TCATAAATCAAATTTTAGTGCACAA-A-A
1066014 GGGTTGGACTATCC
1 GGGTTGGACTATCC
1066028 CGTCAGAAAG
Statistics
Matches: 99, Mismatches: 4, Indels: 6
0.91 0.04 0.06
Matches are distributed among these distances:
90 1 0.01
91 27 0.27
92 70 0.71
93 1 0.01
ACGTcount: A:0.34, C:0.14, G:0.19, T:0.34
Consensus pattern (90 bp):
GGGTTGGACTATCCTCTTAGAAATGTGGGTTAGATTACCCCCAAAAATGACAATTTGATATTTTC
ATAAATCAAATTTTAGTGCACAAAA
Found at i:1066070 original size:92 final size:93
Alignment explanation
Indices: 1065874--1066216 Score: 283
Period size: 92 Copynumber: 3.7 Consensus size: 93
1065864 ATTACCCCTA
* *
1065874 AAAATGACAATTTGATATTTTCATAAATCAAATTTTAGTGCACAA-A-CGAGGTTGGACTATCCT
1 AAAATGACAATTTGATATTTTCATAAATCAAATTTTAGTGCA-AAGATAGAGGTTGGACTATCCC
* * * * * *
1065937 TTTAGAAATG-TG-GTGTTAGATTACCCCCA
65 CTCAGAAAGGATGAG-GTTGGA-TATCCCCG
*
1065966 AAAATGACAATTTGATATTTTCATAAATCAAATTTTAGTGCAAAGATAG-GGTTGGACTATCCCG
1 AAAATGACAATTTGATATTTTCATAAATCAAATTTTAGTGCAAAGATAGAGGTTGGACTATCCCC
*
1066030 TCAGAAA-GATGAGGTTGGAGTATACCCG
66 TCAGAAAGGATGAGGTTGGA-TATCCCCG
* * * * ** ** * * *
1066058 AATATGATAATTTTATGTTTTCATAAATTGAACATTAGTGTAAAAAT-GAGGTTGGAGTATCCCC
1 AAAATGACAATTTGATATTTTCATAAATCAAATTTTAGTGCAAAGATAGAGGTTGGACTATCCCC
1066122 TC-GAAAGGATGAGGTTGGA-ATGCCCCTG
66 TCAGAAAGGATGAGGTTGGATAT-CCCC-G
* * * * * ** * * *
1066150 AAGATGGCAATTTGATGTTTTCATCAATCGAATTTTAGTATAAAGACAG-GGTTAGAGTATCCCC
1 AAAATGACAATTTGATATTTTCATAAATCAAATTTTAGTGCAAAGATAGAGGTTGGACTATCCCC
1066214 TCA
66 TCA
1066217 AAGATGATGG
Statistics
Matches: 207, Mismatches: 34, Indels: 19
0.80 0.13 0.07
Matches are distributed among these distances:
90 2 0.01
91 11 0.05
92 191 0.92
93 3 0.01
ACGTcount: A:0.34, C:0.14, G:0.20, T:0.32
Consensus pattern (93 bp):
AAAATGACAATTTGATATTTTCATAAATCAAATTTTAGTGCAAAGATAGAGGTTGGACTATCCCC
TCAGAAAGGATGAGGTTGGATATCCCCG
Found at i:1066338 original size:80 final size:80
Alignment explanation
Indices: 1066197--1066385 Score: 213
Period size: 80 Copynumber: 2.4 Consensus size: 80
1066187 GTATAAAGAC
* * * * *
1066197 AGGGTTAGAGTATCCCCTCAAAGATGATGGGATTAAATTATTCCCAAAGACAAAAAATTTGGT-T
1 AGGGTTGGAGTATCCCCTCAAAGATGGTAGGATTAAAGTATCCCCAAAGACAAAAAATTTGGTAT
1066261 TTTAGGAAGTAAAAAT
66 TTT-GGAAGTAAAAAT
* * ** *
1066277 AGGGTTGGAGTATCCCCTCAAAGATGGTAAGG-TTAGAGTATCCCCAAGGATGAAAATTTTGGTA
1 AGGGTTGGAGTATCCCCTCAAAGATGGT-AGGATTAAAGTATCCCCAAAGACAAAAAATTTGGTA
*
1066341 TTTTTGAAGTAAAAAT
65 TTTTGGAAGTAAAAAT
*
1066357 AGGGTTGGAGTA-CCTTCCTCGAAGATGGT
1 AGGGTTGGAGTATCC--CCTCAAAGATGGT
1066386 GGGGTTCCCT
Statistics
Matches: 93, Mismatches: 12, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
79 2 0.02
80 73 0.78
81 18 0.19
ACGTcount: A:0.34, C:0.12, G:0.24, T:0.29
Consensus pattern (80 bp):
AGGGTTGGAGTATCCCCTCAAAGATGGTAGGATTAAAGTATCCCCAAAGACAAAAAATTTGGTAT
TTTGGAAGTAAAAAT
Found at i:1069860 original size:13 final size:13
Alignment explanation
Indices: 1069842--1069866 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1069832 TAATACTTCA
1069842 TGTATCGATACAG
1 TGTATCGATACAG
1069855 TGTATCGATACA
1 TGTATCGATACA
1069867 AACAGTGATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAG
Found at i:1070212 original size:20 final size:21
Alignment explanation
Indices: 1070175--1070213 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
1070165 TTAAAAAAAT
*
1070175 AAAACTTGTTTACGATTTTTC
1 AAAACTTATTTACGATTTTTC
1070196 AAAACTTATTT-CGATTTT
1 AAAACTTATTTACGATTTT
1070214 ATCCATACTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.31, C:0.13, G:0.08, T:0.49
Consensus pattern (21 bp):
AAAACTTATTTACGATTTTTC
Found at i:1072458 original size:13 final size:13
Alignment explanation
Indices: 1072436--1072473 Score: 58
Period size: 13 Copynumber: 2.9 Consensus size: 13
1072426 TAGTAACCCA
1072436 TGTATCGATACAT
1 TGTATCGATACAT
*
1072449 TGTATGGATACAT
1 TGTATCGATACAT
*
1072462 TATATCGATACA
1 TGTATCGATACA
1072474 AAGAACATTG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.34, C:0.13, G:0.16, T:0.37
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1078130 original size:97 final size:97
Alignment explanation
Indices: 1077861--1078106 Score: 386
Period size: 97 Copynumber: 2.5 Consensus size: 97
1077851 TTTTTGATTG
* * * *
1077861 AAAAACGGGGTTGGAGTATCCCCTCAGAGGAAT-GGGTTGGAGTGTCCTCGATGATGACAATTTA
1 AAAAGCGGGGTTGGAGTATCCCCTCGGAGGAATGGGGTTGAAGTGTCCCCGATGATGACAATTTA
*
1077925 AGTGATAATAAAATTTAAATTTTGATGCGTTT
66 AGTGATAATAAAATTTAAATTTTGATACGTTT
* * *
1077957 AAAAGCAGGGTTGGAGTATCCTCTCGGAAGAATGGGGTTGAAGTGTCCCCGATGATGACAATTTA
1 AAAAGCGGGGTTGGAGTATCCCCTCGGAGGAATGGGGTTGAAGTGTCCCCGATGATGACAATTTA
* *
1078022 AGTGAGAATAAAATTTAAATTTTTATACGTTT
66 AGTGATAATAAAATTTAAATTTTGATACGTTT
*
1078054 AAAAGTGGGGTTGGAGTATCCCCTCGGAGGAATGGGGTTGAAGTGTCCCCGAT
1 AAAAGCGGGGTTGGAGTATCCCCTCGGAGGAATGGGGTTGAAGTGTCCCCGAT
1078107 AAATAAAATT
Statistics
Matches: 135, Mismatches: 14, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
96 28 0.21
97 107 0.79
ACGTcount: A:0.30, C:0.13, G:0.28, T:0.29
Consensus pattern (97 bp):
AAAAGCGGGGTTGGAGTATCCCCTCGGAGGAATGGGGTTGAAGTGTCCCCGATGATGACAATTTA
AGTGATAATAAAATTTAAATTTTGATACGTTT
Found at i:1080348 original size:20 final size:20
Alignment explanation
Indices: 1080301--1080372 Score: 65
Period size: 20 Copynumber: 3.6 Consensus size: 20
1080291 AAAAAGACAT
*
1080301 AATGTATCGATACATTGA-A
1 AATGTATCGATACATTCATA
*
1080320 GAATATATCGATACATTCATA
1 -AATGTATCGATACATTCATA
* * * * *
1080341 CATGTATCGTTATATTGAAA
1 AATGTATCGATACATTCATA
1080361 AATGTATCGATA
1 AATGTATCGATA
1080373 AATCTGGGTA
Statistics
Matches: 41, Mismatches: 10, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
20 40 0.98
21 1 0.02
ACGTcount: A:0.40, C:0.11, G:0.14, T:0.35
Consensus pattern (20 bp):
AATGTATCGATACATTCATA
Found at i:1081071 original size:28 final size:28
Alignment explanation
Indices: 1080980--1082108 Score: 1370
Period size: 28 Copynumber: 39.5 Consensus size: 28
1080970 CACCGACACA
* * * *
1080980 TGTGGGCTTTGAAAAGAGTTACTATTGGCT
1 TGTGGGCTTTGAAAAG-G-TGCCACTGACT
*
1081010 TGTGGGCTTTGAAAAGAGTGTCACTGACT
1 TGTGGGCTTTGAAAAG-GTGCCACTGACT
*
1081039 TGTGGGCTTTGAAAAGGTGCCACTCACT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
*
1081067 TGTGGGCTTTG-AAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAAGG-TGCCACTGACT
*
1081095 TGTGGGCTTTGAAAAAGTGCCACTGACT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
1081123 TGTGGGCTTTG-AAAGAGTGCCACTGACT
1 TGTGGGCTTTGAAAAG-GTGCCACTGACT
* *
1081151 CGTGGGCTTTGAAAAGGTGCCACCGACT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
1081179 TGCGTGGGCTTT-AAAAGGGTGCCACTGACT
1 T--GTGGGCTTTGAAAA-GGTGCCACTGACT
* *
1081209 TGCGTGGGCTTTGAAATGATGCCACTGACT
1 T--GTGGGCTTTGAAAAGGTGCCACTGACT
1081239 TGTGGGCTTTG-AAAGAGTGCCACTGACT
1 TGTGGGCTTTGAAAAG-GTGCCACTGACT
*
1081267 CGTGGGCTTTGAAGAAGGTGCCACTGACT
1 TGTGGGCTTTGAA-AAGGTGCCACTGACT
*
1081296 CGTGGGCTTTGAAAAGGTGCCACTGACT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
*
1081324 TGCGTGGGCTTTAAAAAGGTGCCACTGACT
1 T--GTGGGCTTTGAAAAGGTGCCACTGACT
1081354 TGCGTGGGCTTTG-AAAGGATGCCACTGACT
1 T--GTGGGCTTTGAAAAGG-TGCCACTGACT
*
1081384 TGTGGGCTTTG-AAAGAGTGCCACTAACT
1 TGTGGGCTTTGAAAAG-GTGCCACTGACT
*
1081412 CGTGGGCTTTGAAAAGGTGCCACTGACT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
* *
1081440 CGTGGGC-TTGAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
1081467 TGTGGGCTTTGAAAAGAGTGCCACTGACT
1 TGTGGGCTTTGAAAAG-GTGCCACTGACT
* *
1081496 TGTGGGCTTTGAAAGGAGTTGCCACCGACTT
1 TGTGGGCTTTGAAA--AGGTGCCACTGAC-T
* *
1081527 GTGTGGGCTTTGAAAGGAGTGCCACTAACTT
1 -TGTGGGCTTTGAAAAG-GTGCCACTGAC-T
1081558 GTGTGGGCTTTG-AAAGGATGCCACTGACTT
1 -TGTGGGCTTTGAAAAGG-TGCCACTGAC-T
* *
1081588 GTGTGGGGTTTG-AAAGGATGCCACTAACT
1 -TGTGGGCTTTGAAAAGG-TGCCACTGACT
* *
1081617 TGTGGGCTTCGAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
* *
1081645 TGTGGGC-TTCAAAAGGGCGCCACTGACT
1 TGTGGGCTTTGAAAA-GGTGCCACTGACT
* *
1081673 TGTGGGCTCTGAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
* *
1081701 TGTGGGCTTTGAAAGGGTACCACTGACT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
*
1081729 TGTGGGCTTTGAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
* *
1081757 TGTGGGCTCTGAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
* *
1081785 TGTGGGCTCTGAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
** * *
1081813 TGTCAGCTTTGAAAGGGTACCACTGACT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
1081841 TGTGGGCTTTG-AAAGAGTGCCACTGACT
1 TGTGGGCTTTGAAAAG-GTGCCACTGACT
*
1081869 TGTGGGC-TTGAAAAGGTGCCACTGATT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
*
1081896 TATGGGCTTTG-AAAGAGTGCCACTGACT
1 TGTGGGCTTTGAAAAG-GTGCCACTGACT
* *
1081924 TGTGGGCCTTG-AAAGAGTGCTACTGACT
1 TGTGGGCTTTGAAAAG-GTGCCACTGACT
1081952 TGTGGGCTTTG-AAAGAGTGCCACTGACT
1 TGTGGGCTTTGAAAAG-GTGCCACTGACT
* *
1081980 TGTGGGCTTTGAAAGGGTGCCACTAACT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
1082008 TGTGGGCTTTGAAAAGAGTGCCACTGACT
1 TGTGGGCTTTGAAAAG-GTGCCACTGACT
1082037 TGTGGGCTTTGAAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAA-GGTGCCACTGACT
1082066 TGTGGGCTTTGAAAAGAGTGCCACTGACT
1 TGTGGGCTTTGAAAAG-GTGCCACTGACT
*
1082095 CGTGGGCTTTGAAA
1 TGTGGGCTTTGAAA
1082109 GGGATGAACA
Statistics
Matches: 988, Mismatches: 76, Indels: 71
0.87 0.07 0.06
Matches are distributed among these distances:
27 67 0.07
28 524 0.53
29 187 0.19
30 168 0.17
31 28 0.03
32 14 0.01
ACGTcount: A:0.22, C:0.19, G:0.32, T:0.28
Consensus pattern (28 bp):
TGTGGGCTTTGAAAAGGTGCCACTGACT
Found at i:1083369 original size:8 final size:8
Alignment explanation
Indices: 1083346--1083392 Score: 60
Period size: 8 Copynumber: 5.9 Consensus size: 8
1083336 TTTTGGCTAT
1083346 TTTTTCTTG
1 TTTTT-TTG
*
1083355 GTTTTTTG
1 TTTTTTTG
1083363 TTTTTTTG
1 TTTTTTTG
*
1083371 TTTTGTT-
1 TTTTTTTG
1083378 TTTTTTTG
1 TTTTTTTG
1083386 TTTTTTT
1 TTTTTTT
1083393 TTTGGGGTGT
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
7 6 0.18
8 23 0.70
9 4 0.12
ACGTcount: A:0.00, C:0.02, G:0.13, T:0.85
Consensus pattern (8 bp):
TTTTTTTG
Found at i:1083374 original size:13 final size:13
Alignment explanation
Indices: 1083358--1083396 Score: 53
Period size: 13 Copynumber: 3.0 Consensus size: 13
1083348 TTTCTTGGTT
1083358 TTTTGTTTTTTTG
1 TTTTGTTTTTTTG
1083371 TTTTGTTTTTTT-
1 TTTTGTTTTTTTG
*
1083383 TTGTTTTTTTTTTG
1 TT-TTGTTTTTTTG
1083397 GGGTGTAAAG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
12 2 0.09
13 21 0.91
ACGTcount: A:0.00, C:0.00, G:0.13, T:0.87
Consensus pattern (13 bp):
TTTTGTTTTTTTG
Found at i:1083379 original size:11 final size:10
Alignment explanation
Indices: 1083325--1083394 Score: 61
Period size: 10 Copynumber: 6.5 Consensus size: 10
1083315 GACCCCTTTC
*
1083325 TTTTTCTTTT
1 TTTTTGTTTT
1083335 TTTTTGGCTATTT
1 TTTTT-G-T-TTT
1083348 TTTCTTGGTTTT
1 TTT-TT-GTTTT
1083360 TTGTTT-TTTT
1 TT-TTTGTTTT
*
1083370 GTTTTGTTTT
1 TTTTTGTTTT
1083380 TTTTTGTTTT
1 TTTTTGTTTT
1083390 TTTTT
1 TTTTT
1083395 TGGGGTGTAA
Statistics
Matches: 51, Mismatches: 3, Indels: 12
0.77 0.05 0.18
Matches are distributed among these distances:
9 3 0.06
10 28 0.55
12 8 0.16
13 8 0.16
14 4 0.08
ACGTcount: A:0.01, C:0.04, G:0.11, T:0.83
Consensus pattern (10 bp):
TTTTTGTTTT
Found at i:1083381 original size:15 final size:14
Alignment explanation
Indices: 1083326--1083395 Score: 68
Period size: 15 Copynumber: 4.7 Consensus size: 14
1083316 ACCCCTTTCT
1083326 TTTTCTTTTTTTTTGG
1 TTTT-TTTTTTTTT-G
* * * *
1083342 CTATTTTTTCTTGG
1 TTTTTTTTTTTTTG
1083356 TTTTTTGTTTTTTTG
1 TTTTTT-TTTTTTTG
1083371 TTTTGTTTTTTTTTG
1 TTTT-TTTTTTTTTG
1083386 TTTTTTTTTT
1 TTTTTTTTTT
1083396 GGGGTGTAAA
Statistics
Matches: 44, Mismatches: 8, Indels: 6
0.76 0.14 0.10
Matches are distributed among these distances:
14 11 0.25
15 29 0.66
16 4 0.09
ACGTcount: A:0.01, C:0.04, G:0.11, T:0.83
Consensus pattern (14 bp):
TTTTTTTTTTTTTG
Found at i:1083395 original size:21 final size:21
Alignment explanation
Indices: 1083325--1083396 Score: 65
Period size: 21 Copynumber: 3.3 Consensus size: 21
1083315 GACCCCTTTC
*
1083325 TTTTTCTTTTTTTTTGGCTATTTT
1 TTTTTGTTTTTTTTT-G-T-TTTT
* *
1083349 TTCTTGGTTTTTTGTT-TTTTT
1 TT-TTTGTTTTTTTTTGTTTTT
*
1083370 GTTTTGTTTTTTTTTGTTTTT
1 TTTTTGTTTTTTTTTGTTTTT
1083391 TTTTTG
1 TTTTTG
1083397 GGGTGTAAAG
Statistics
Matches: 39, Mismatches: 7, Indels: 7
0.74 0.13 0.13
Matches are distributed among these distances:
20 11 0.28
21 15 0.38
22 1 0.03
24 2 0.05
25 10 0.26
ACGTcount: A:0.01, C:0.04, G:0.12, T:0.82
Consensus pattern (21 bp):
TTTTTGTTTTTTTTTGTTTTT
Found at i:1094408 original size:10 final size:10
Alignment explanation
Indices: 1094393--1094421 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
1094383 TTCGTATACA
1094393 AAAAAAAAAC
1 AAAAAAAAAC
1094403 AAAAAAAAAC
1 AAAAAAAAAC
1094413 AAAAAAAAA
1 AAAAAAAAA
1094422 GAAGGGTCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.93, C:0.07, G:0.00, T:0.00
Consensus pattern (10 bp):
AAAAAAAAAC
Found at i:1095686 original size:13 final size:13
Alignment explanation
Indices: 1095668--1095717 Score: 50
Period size: 13 Copynumber: 3.9 Consensus size: 13
1095658 GAAATTATCA
1095668 TCAAGAACTTTTG
1 TCAAGAACTTTTG
* *
1095681 TCAAGAACGTTCG
1 TCAAGAACTTTTG
1095694 TCATA-AAC-TTTG
1 TCA-AGAACTTTTG
*
1095706 TCAAGAAATTTT
1 TCAAGAACTTTT
1095718 CATCAATACG
Statistics
Matches: 30, Mismatches: 4, Indels: 6
0.75 0.10 0.15
Matches are distributed among these distances:
11 1 0.03
12 8 0.27
13 20 0.67
14 1 0.03
ACGTcount: A:0.34, C:0.16, G:0.14, T:0.36
Consensus pattern (13 bp):
TCAAGAACTTTTG
Found at i:1095773 original size:28 final size:28
Alignment explanation
Indices: 1095734--1095974 Score: 241
Period size: 28 Copynumber: 8.2 Consensus size: 28
1095724 TACGACTCCT
* **
1095734 TTTCAAAGCCCACAAGTTAGTGGCATTC
1 TTTCAAAGCCCACAAGTCAGTGGCACCC
*
1095762 TTTCAAAGCCCACAAGTTAGTGGCACCC
1 TTTCAAAGCCCACAAGTCAGTGGCACCC
* * *
1095790 TTTCAAAGCTCACAACTCAGTGGCATCC
1 TTTCAAAGCCCACAAGTCAGTGGCACCC
* *
1095818 TTTCAAAGCCCGCAAGCCAGTGGCACCC
1 TTTCAAAGCCCACAAGTCAGTGGCACCC
*
1095846 TTTCAAAGTCCACAAGTCAGTGGCACCC
1 TTTCAAAGCCCACAAGTCAGTGGCACCC
* * *
1095874 TTTCAAAGCTCACAAGTCAGTGGCATCA
1 TTTCAAAGCCCACAAGTCAGTGGCACCC
*
1095902 TTCTCTAAAGCCCACACAAGTCAATGGCAACCC
1 TT-TC-AAAG-CC-CACAAGTCAGTGGC-ACCC
1095935 TTTTCAAAAGCCTACACAAGT-AGTTGGCAACCC
1 -TTTC-AAAGCC--CACAAGTCAG-TGGC-ACCC
*
1095968 TCTCAAA
1 TTTCAAA
1095975 AGTCCACACA
Statistics
Matches: 180, Mismatches: 25, Indels: 13
0.83 0.11 0.06
Matches are distributed among these distances:
28 124 0.69
29 2 0.01
30 4 0.02
31 4 0.02
32 19 0.11
33 25 0.14
34 2 0.01
ACGTcount: A:0.30, C:0.31, G:0.16, T:0.22
Consensus pattern (28 bp):
TTTCAAAGCCCACAAGTCAGTGGCACCC
Found at i:1095875 original size:84 final size:84
Alignment explanation
Indices: 1095734--1095917 Score: 269
Period size: 84 Copynumber: 2.2 Consensus size: 84
1095724 TACGACTCCT
** ** *
1095734 TTTCAAAGCCCACAAGTTAGTGGCATTCTTTCAAAGCCCACAAGTTAGTGGCACCCTTTCAAAGC
1 TTTCAAAGCCCACAAGCCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGC
*
1095799 TCACAACTCAGTGGCATCC
66 TCACAACTCAGTGGCATCA
* *
1095818 TTTCAAAGCCCGCAAGCCAGTGGCACCCTTTCAAAGTCCACAAGTCAGTGGCACCCTTTCAAAGC
1 TTTCAAAGCCCACAAGCCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGC
*
1095883 TCACAAGTCAGTGGCATCA
66 TCACAACTCAGTGGCATCA
1095902 TTCTCTAAAGCCCACA
1 TT-TC-AAAGCCCACA
1095918 CAAGTCAATG
Statistics
Matches: 88, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
84 77 0.88
85 2 0.02
86 9 0.10
ACGTcount: A:0.29, C:0.32, G:0.17, T:0.23
Consensus pattern (84 bp):
TTTCAAAGCCCACAAGCCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGC
TCACAACTCAGTGGCATCA
Found at i:1095982 original size:65 final size:62
Alignment explanation
Indices: 1095762--1096072 Score: 212
Period size: 56 Copynumber: 5.2 Consensus size: 62
1095752 AGTGGCATTC
* * * * *
1095762 TTTCAAAGCC--CACAAGTTAGTGGCACCCTT-TC-AAAG-CTCACAACTCAGTGGC-ATCC-
1 TTTCAAAGCCTACACAAG-TAGTGGCAACCTTCTCTAAAGCCACACAAGTCAATGGCAACCCT
* * * * *
1095818 TTTCAAAGCC--CGCAAGCCAGTGGCACCCTT-TC-AAAGTC-CACAAGTCAGTGGC-ACCC-
1 TTTCAAAGCCTACACAAG-TAGTGGCAACCTTCTCTAAAGCCACACAAGTCAATGGCAACCCT
* *
1095874 TTTCAAAG-CT-CACAAGTCAGTGGCATCATTCTCTAAAGCCCACACAAGTCAATGGCAACCCT
1 TTTCAAAGCCTACACAAGT-AGTGGCAACCTTCTCTAAAG-CCACACAAGTCAATGGCAACCCT
* * *
1095936 TTTCAAAAGCCTACACAAGTAGTTGGCAACCCTCTCAAAAGTCCACACAAG-CTAACGGCAACCC
1 TTTC-AAAGCCTACACAAGTAG-TGGCAACCTTCTCTAAAG-CCACACAAGTC-AATGGCAACCC
1096000 T
62 T
* * * ***
1096001 TTT-AAAGCCCACACAAATTGGTGGCAACCTTCTCTAAAGCCACACAAGTTGGTGGCAACCCT
1 TTTCAAAGCCTACAC-AAGTAGTGGCAACCTTCTCTAAAGCCACACAAGTCAATGGCAACCCT
1096063 TTT-AAA-CCTA
1 TTTCAAAGCCTA
1096073 ACGTCGCTGG
Statistics
Matches: 212, Mismatches: 27, Indels: 27
0.80 0.10 0.10
Matches are distributed among these distances:
55 1 0.00
56 72 0.34
57 3 0.01
58 4 0.02
59 1 0.00
60 13 0.06
61 7 0.03
62 28 0.13
63 30 0.14
64 9 0.04
65 44 0.21
ACGTcount: A:0.31, C:0.32, G:0.16, T:0.22
Consensus pattern (62 bp):
TTTCAAAGCCTACACAAGTAGTGGCAACCTTCTCTAAAGCCACACAAGTCAATGGCAACCCT
Found at i:1096027 original size:31 final size:30
Alignment explanation
Indices: 1095992--1096068 Score: 111
Period size: 31 Copynumber: 2.5 Consensus size: 30
1095982 ACAAGCTAAC
1095992 GGCAACCCTTTTAAAGCCCACACAAATTGGT
1 GGCAACCCTTTTAAAG-CCACACAAATTGGT
*
1096023 GGCAA-CCTTCTCTAAAGCCACACAAGTTGGT
1 GGCAACCCTT-T-TAAAGCCACACAAATTGGT
1096054 GGCAACCCTTTTAAA
1 GGCAACCCTTTTAAA
1096069 CCTAACGTCG
Statistics
Matches: 42, Mismatches: 1, Indels: 7
0.84 0.02 0.14
Matches are distributed among these distances:
30 8 0.19
31 25 0.60
32 9 0.21
ACGTcount: A:0.31, C:0.29, G:0.17, T:0.23
Consensus pattern (30 bp):
GGCAACCCTTTTAAAGCCACACAAATTGGT
Found at i:1096295 original size:91 final size:91
Alignment explanation
Indices: 1096138--1096305 Score: 225
Period size: 91 Copynumber: 1.8 Consensus size: 91
1096128 TCTAATGTCA
* ** *
1096138 CTGGCCTTGAATCAGCATATTGGCACATTTTTCTTTCTTAAGACCAATGTCTCTGGCCTTAGATC
1 CTGGCCTTGAATCAGCATATTGGAACATTTACCTCTCTTAAGACCAATGTCTCTGGCCTTAGATC
1096203 AGCACATTGGCACAAGCCCAATATCG
66 AGCACATTGGCACAAGCCCAATATCG
* *
1096229 CTGGCCTTGAATCAGCATATTGGAACCTTTACCATCT-TTAAGTCCAATGTCGT-TGGCCTT-GA
1 CTGGCCTTGAATCAGCATATTGGAACATTTACC-TCTCTTAAGACCAATGTC-TCTGGCCTTAG-
*
1096291 ATCAGCATATTGGCA
63 ATCAGCACATTGGCA
1096306 TTTTTTTCTT
Statistics
Matches: 67, Mismatches: 7, Indels: 6
0.84 0.09 0.08
Matches are distributed among these distances:
90 1 0.01
91 63 0.94
92 3 0.04
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.32
Consensus pattern (91 bp):
CTGGCCTTGAATCAGCATATTGGAACATTTACCTCTCTTAAGACCAATGTCTCTGGCCTTAGATC
AGCACATTGGCACAAGCCCAATATCG
Found at i:1096298 original size:52 final size:52
Alignment explanation
Indices: 1096220--1096540 Score: 277
Period size: 52 Copynumber: 5.9 Consensus size: 52
1096210 TGGCACAAGC
* *
1096220 CCAATATCGCTGGCCTTGAATCAGCATATTGGAACCTTTACCATCTTTAAGT
1 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCATCTTTAAGT
* * ** * *
1096272 CCAATGTCGTTGGCCTTGAATCAGCATATTGGCATTTTTTTCTTCTTTCTTAAGT
1 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCATC--T-TTAAGT
* * * * *
1096327 CCAATATCACTGGCATTGAACCAGCATATTGGCACTTTTGTCATCTTTAAG-
1 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCATCTTTAAGT
* * * *
1096378 CCTAATATCGCTGGCTTTGAATCAGCATATCGACACCTTTATTATTTTTCTCATCTTCAAGT
1 CC-AATATCGCTGGCCTTGAATCAGCATATTGGCACC--T-TTA------TCATCTTTAAGT
* ** * * * *
1096440 CCAATGTCATTGGTCTTGAATTAGCACATTGGCACCTTTGTCATCTTTAAG-
1 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCATCTTTAAGT
1096491 CCTAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCATTCTTT
1 CC-AATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCA-TCTTT
1096541 TCATCTTTAA
Statistics
Matches: 211, Mismatches: 42, Indels: 31
0.74 0.15 0.11
Matches are distributed among these distances:
51 4 0.02
52 114 0.54
53 6 0.03
54 2 0.01
55 45 0.21
58 2 0.01
59 1 0.00
61 35 0.17
62 2 0.01
ACGTcount: A:0.24, C:0.23, G:0.15, T:0.38
Consensus pattern (52 bp):
CCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCATCTTTAAGT
Found at i:1096484 original size:113 final size:111
Alignment explanation
Indices: 1096220--1096596 Score: 408
Period size: 113 Copynumber: 3.4 Consensus size: 111
1096210 TGGCACAAGC
** * * * *
1096220 CCAATATCGCTGGCCTTGAATCAGCATATTGGAACCTTTACCATCTTTAAGTCC-AATGTCGTTG
1 CCAATATCATTGG-CTTGAATCAGCATATTGGCACCTTTATCATCTTTAAG-CCTAATATCGCTG
* *
1096284 GCCTTGAATCAGCATATTGGCA--TTT-TT-TTCTTCT-TTCTTAAGT
64 GCCTTGAATCAGCATATTGGCACCTTTATTATTTTTCTCATCTTAAGT
* * * *
1096327 CCAATATCACTGGCATTGAACCAGCATATTGGCACTTTTGTCATCTTTAAGCCTAATATCGCTGG
1 CCAATATCATTGGC-TTGAATCAGCATATTGGCACCTTTATCATCTTTAAGCCTAATATCGCTGG
* * *
1096392 CTTTGAATCAGCATATCGACACCTTTATTATTTTTCTCATCTTCAAGT
65 CCTTGAATCAGCATATTGGCACCTTTATTATTTTTCTCATCTT-AAGT
* * * *
1096440 CCAATGTCATTGGTCTTGAATTAGCACATTGGCACCTTTGTCATCTTTAAGCCTAATATCGCTGG
1 CCAATATCATTGG-CTTGAATCAGCATATTGGCACCTTTATCATCTTTAAGCCTAATATCGCTGG
* *
1096505 CCTTGAATCAGCATATTGGCACCTTTATCATTCTTT-TCATCTTTAAGA
65 CCTTGAATCAGCATATTGGCACCTTTATTATT-TTTCTCATC-TTAAGT
* * * *
1096553 CCAATATCGTTGGCCGTGAATTAGCATATTGGTACCTTTATCAT
1 CCAATATCATTGG-CTTGAATCAGCATATTGGCACCTTTATCAT
1096597 TTTCTCATCC
Statistics
Matches: 228, Mismatches: 31, Indels: 16
0.83 0.11 0.06
Matches are distributed among these distances:
106 3 0.01
107 70 0.31
109 3 0.01
110 2 0.01
111 6 0.03
112 4 0.02
113 134 0.59
114 6 0.03
ACGTcount: A:0.24, C:0.23, G:0.15, T:0.38
Consensus pattern (111 bp):
CCAATATCATTGGCTTGAATCAGCATATTGGCACCTTTATCATCTTTAAGCCTAATATCGCTGGC
CTTGAATCAGCATATTGGCACCTTTATTATTTTTCTCATCTTAAGT
Found at i:1096579 original size:61 final size:61
Alignment explanation
Indices: 1096475--1096605 Score: 185
Period size: 61 Copynumber: 2.1 Consensus size: 61
1096465 ACATTGGCAC
*
1096475 CTTTGTCATCTTTAAGCCTAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCATT
1 CTTT-TCATCTTTAAGCCTAATATCGCTGGCCGTGAATCAGCATATTGGCACCTTTATCATT
* * *
1096537 CTTTTCATCTTTAAGACC-AATATCGTTGGCCGTGAATTAGCATATTGGTACCTTTATCATT
1 CTTTTCATCTTTAAG-CCTAATATCGCTGGCCGTGAATCAGCATATTGGCACCTTTATCATT
*
1096598 -TTCTCATC
1 CTTTTCATC
1096606 CTTATCATCT
Statistics
Matches: 63, Mismatches: 5, Indels: 4
0.88 0.07 0.06
Matches are distributed among these distances:
60 7 0.11
61 50 0.79
62 6 0.10
ACGTcount: A:0.23, C:0.23, G:0.14, T:0.40
Consensus pattern (61 bp):
CTTTTCATCTTTAAGCCTAATATCGCTGGCCGTGAATCAGCATATTGGCACCTTTATCATT
Found at i:1097776 original size:79 final size:79
Alignment explanation
Indices: 1097656--1097828 Score: 249
Period size: 79 Copynumber: 2.2 Consensus size: 79
1097646 ACAACGGGGC
* * * * *
1097656 TGGAGTATCCTCGATTGTGAGAAATCAATATTTTGGAAATAAAGCCAGGGTTGGAGTATCCCCTT
1 TGGAGTATCCCCGATTATGAGAAATCAATATTTTAGAAATAAAGCCAGGGTTGAAGTATCCCCTC
*
1097721 GGAAATAACAGGGT
66 GAAAATAACAGGGT
* *
1097735 TGGAGTATCCCCGATTATGAGAAATCAATATTTTA-AGAATAAAGCCGGGGTTGAAGTATCCTCT
1 TGGAGTATCCCCGATTATGAGAAATCAATATTTTAGA-AATAAAGCCAGGGTTGAAGTATCCCCT
*
1097799 CGAAAATAACGGGGT
65 CGAAAATAACAGGGT
1097814 TGGAGTATCCCCGAT
1 TGGAGTATCCCCGAT
1097829 GAGTAACGGG
Statistics
Matches: 84, Mismatches: 9, Indels: 2
0.88 0.09 0.02
Matches are distributed among these distances:
78 1 0.01
79 83 0.99
ACGTcount: A:0.32, C:0.16, G:0.25, T:0.27
Consensus pattern (79 bp):
TGGAGTATCCCCGATTATGAGAAATCAATATTTTAGAAATAAAGCCAGGGTTGAAGTATCCCCTC
GAAAATAACAGGGT
Found at i:1097815 original size:28 final size:27
Alignment explanation
Indices: 1097780--1097855 Score: 100
Period size: 27 Copynumber: 2.8 Consensus size: 27
1097770 AGAATAAAGC
*
1097780 CGGGGTTGAAGTATCCTCTCGA-AAATAA
1 CGGGGTTGGAGTATCC-C-CGATAAATAA
* *
1097808 CGGGGTTGGAGTATCCCCGATGAGTAA
1 CGGGGTTGGAGTATCCCCGATAAATAA
1097835 CGGGGTTGGAGTATCCCCGAT
1 CGGGGTTGGAGTATCCCCGAT
1097856 TGTGAAAAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
26 3 0.07
27 26 0.59
28 15 0.34
ACGTcount: A:0.24, C:0.20, G:0.33, T:0.24
Consensus pattern (27 bp):
CGGGGTTGGAGTATCCCCGATAAATAA
Found at i:1097900 original size:53 final size:51
Alignment explanation
Indices: 1097839--1097961 Score: 158
Period size: 51 Copynumber: 2.4 Consensus size: 51
1097829 GAGTAACGGG
* *
1097839 GTTGGAGTATCCCCGATTGT-GAAAAATTGGTGTTTTTTGGAAATACAATCAGA
1 GTTGGAGTATCCCCGATTGTAG-AAAATTGGTG--TTTTGAAAATAAAATCAGA
* *
1097892 GTTGGAGTATCCCCGATTATAGAAAATTGGTGTTTTGAAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTGTAGAAAATTGGTGTTTTGAAAATAAAATCAGA
* *
1097943 GTTGAAATATCCCCGATTG
1 GTTGGAGTATCCCCGATTG
1097962 CGGAGAATTG
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
51 32 0.52
53 29 0.47
54 1 0.02
ACGTcount: A:0.32, C:0.12, G:0.24, T:0.33
Consensus pattern (51 bp):
GTTGGAGTATCCCCGATTGTAGAAAATTGGTGTTTTGAAAATAAAATCAGA
Found at i:1100355 original size:21 final size:21
Alignment explanation
Indices: 1100331--1100372 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
1100321 GTATCAATAC
1100331 AATGTATCGATACACTTCCTT
1 AATGTATCGATACACTTCCTT
*
1100352 AATGTATCGATACATTTCCTT
1 AATGTATCGATACACTTCCTT
1100373 GGTAGTAGCT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.29, C:0.21, G:0.10, T:0.40
Consensus pattern (21 bp):
AATGTATCGATACACTTCCTT
Found at i:1100550 original size:12 final size:12
Alignment explanation
Indices: 1100528--1100559 Score: 55
Period size: 12 Copynumber: 2.6 Consensus size: 12
1100518 ATTTGGACAA
1100528 AAATGTTTTTTTT
1 AAAT-TTTTTTTT
1100541 AAATTTTTTTTT
1 AAATTTTTTTTT
1100553 AAATTTT
1 AAATTTT
1100560 AATCCTTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 15 0.79
13 4 0.21
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.69
Consensus pattern (12 bp):
AAATTTTTTTTT
Found at i:1101334 original size:55 final size:55
Alignment explanation
Indices: 1101195--1101387 Score: 199
Period size: 55 Copynumber: 3.4 Consensus size: 55
1101185 GTGCATCCTA
* * * * *
1101195 CTCTTTGTGGACTAAAAAGTGCCACCAACTTGTGTGGGTTTTGAAAAGAAAAATGCGTCCTA
1 CTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTT-----G-AAAA-GCGTCATG
* * *
1101257 CTCTTTAAGGACTGAAGGGTGCCACCAACTTGTGTGGGCTTT-AAAAGGCGTCATG
1 CTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAA-GCGTCATG
* * *
1101312 CTCTTTGAGGACTAAAATGTGCCACCAATTTGTGTGGGCTTTGAAAAGCGTCCTG
1 CTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGCGTCATG
*
1101367 CTCTTTGAGGACTAAAGGGTG
1 CTCTTTGAGGACTAAAAGGTG
1101388 AAAAGAGAGA
Statistics
Matches: 113, Mismatches: 17, Indels: 9
0.81 0.12 0.06
Matches are distributed among these distances:
55 73 0.65
56 4 0.04
62 36 0.32
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (55 bp):
CTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGCGTCATG
Found at i:1101467 original size:61 final size:55
Alignment explanation
Indices: 1101398--1101539 Score: 198
Period size: 61 Copynumber: 2.5 Consensus size: 55
1101388 AAAAGAGAGA
1101398 GCATCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAG
1 GCATCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTT-----G-AAAG
1101459 GCATCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAG
1 GCATCCTGCTCTTTGAGGACTAG-AAGGTGCCACCAACTTGTGTGGGCTTTGAAAG
*
1101514 GCGTCCTGCTCTTTGAGGACTA-AAGG
1 GCATCCTGCTCTTTGAGGACTAGAAGG
1101540 GTGAAAGGAG
Statistics
Matches: 78, Mismatches: 1, Indels: 11
0.87 0.01 0.12
Matches are distributed among these distances:
54 4 0.05
55 24 0.31
56 1 0.01
60 1 0.01
61 48 0.62
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (55 bp):
GCATCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAG
Found at i:1101533 original size:155 final size:155
Alignment explanation
Indices: 1101252--1101977 Score: 1099
Period size: 155 Copynumber: 4.7 Consensus size: 155
1101242 GAAAAATGCG
* * * *
1101252 TCCTACTCTTTAAGGACT-GAAGGGTGCCACCAACTTGTGTGGGCTTT------AAAAGGCGTCA
1 TCCTGCTCTTTGAGGACTAGAA-GGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCC
* * * *
1101310 TGCTCTTTGAGGACTAAAATGTGCCACCAATTTGTGTGGGCTTTGAAAAGCGTCCTGCTCTTTGA
65 TGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGA
*
1101375 GGACTAAAGGGTGAAAAGAGAGAGCA
130 GGACTAAAGGGTGAAAGGAGAGAGCA
1101401 TCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCCT
1 TCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCCT
1101466 GCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAG
66 GCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAG
*
1101531 GACTAAAGGGTGAAAGGAGAGAGCG
131 GACTAAAGGGTGAAAGGAGAGAGCA
* *
1101556 TCCAGTTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCCT
1 TCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCCT
* * * *
1101621 GCTCTTTGAGGACTGAAATGCGCCACCAACATGTGTGGGCTTTGAAAGGCATCCTGCTCTTTGAG
66 GCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAG
* *
1101686 AACTAAAAGGTGAAAGGAGAGAGCA
131 GACTAAAGGGTGAAAGGAGAGAGCA
* * *
1101711 TCCTGTTCTTTGAGGACAAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCTT
1 TCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCCT
*
1101776 GCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTAAG
66 GCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAG
* *
1101841 GGCTAAAGGGTGAAAGGAGAGAGCG
131 GACTAAAGGGTGAAAGGAGAGAGCA
* * * *
1101866 TCATGCTCTTTGAGGATTAGAAGGTGCCACCAACTTATATGGGCTTTAAAAGGAAAAGGCATCCT
1 TCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCCT
* * *
1101931 GCTCGTTGAGGACAGAGAA-GTGCCACCAACTCGTGTGGGCTTTGAAA
66 GCTCTTTGAGGACTGA-AAGGTGCCACCAACTTGTGTGGGCTTTGAAA
1101978 AGAAGAAGGC
Statistics
Matches: 528, Mismatches: 41, Indels: 10
0.91 0.07 0.02
Matches are distributed among these distances:
149 41 0.08
150 3 0.01
155 482 0.91
156 2 0.00
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (155 bp):
TCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCCT
GCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAG
GACTAAAGGGTGAAAGGAGAGAGCA
Found at i:1101796 original size:61 final size:61
Alignment explanation
Indices: 1101708--1101824 Score: 182
Period size: 61 Copynumber: 1.9 Consensus size: 61
1101698 AAAGGAGAGA
*
1101708 GCATCCTGTTCTTTGAGGACAAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAG
1 GCATCCTGCTCTTTGAGGACAAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAG
* * *
1101769 GCATCTTGCTCTTTGAGGAC-TGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGG
1 GCATCCTGCTCTTTGAGGACAAG-AAGGTGCCACCAACTTGTGTGGGCTTTAAAAGG
1101825 CGTCCTGCTC
Statistics
Matches: 51, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
60 1 0.02
61 50 0.98
ACGTcount: A:0.26, C:0.19, G:0.29, T:0.26
Consensus pattern (61 bp):
GCATCCTGCTCTTTGAGGACAAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAG
Found at i:1101992 original size:62 final size:60
Alignment explanation
Indices: 1101869--1102095 Score: 200
Period size: 62 Copynumber: 3.8 Consensus size: 60
1101859 GAGAGCGTCA
* * ** *
1101869 TGCTCTTTGAGGATTAGA-AGGTGCCACCAACTTATATGGGCTTTAAAAGGAAAAGGCATCC
1 TGCTCTTTGAGGA-CAGAGAAGTGCCACCAACTCGTGTGGGCTTTAAAA-GAAAAGGCATCC
*
1101930 TGCTCGTTGAGGACAGAGAAGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAGAAGGCATCC
1 TGCTCTTTGAGGACAGAGAAGTGCCACCAACTCGTGTGGGCTTT-AAAAGAA-AAGGCATCC
* * * * * *
1101992 TGCTATTTAAGGACTG-GAGGGTGCTACCAACTCGTGTGGGCTTT----G-AAAGGCGTCC
1 TGCTCTTTGAGGACAGAGA-AGTGCCACCAACTCGTGTGGGCTTTAAAAGAAAAGGCATCC
* * * *
1102047 TGCTCTTTGAGGACTA-AAAAGTGCCACCAACTTGTGTGAGCTTTGAAAG
1 TGCTCTTTGAGGAC-AGAGAAGTGCCACCAACTCGTGTGGGCTTTAAAAG
1102096 GCGTCATGTT
Statistics
Matches: 135, Mismatches: 21, Indels: 22
0.76 0.12 0.12
Matches are distributed among these distances:
55 41 0.30
56 2 0.01
57 1 0.01
59 1 0.01
60 3 0.02
61 39 0.29
62 48 0.36
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.25
Consensus pattern (60 bp):
TGCTCTTTGAGGACAGAGAAGTGCCACCAACTCGTGTGGGCTTTAAAAGAAAAGGCATCC
Found at i:1102076 original size:55 final size:55
Alignment explanation
Indices: 1102012--1102120 Score: 173
Period size: 55 Copynumber: 2.0 Consensus size: 55
1102002 GGACTGGAGG
* * *
1102012 GTGCTACCAACTCGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTAAAAA
1 GTGCCACCAACTCGTGTGAGCTTTGAAAGGCGTCATGCTCTTTGAGGACTAAAAA
* *
1102067 GTGCCACCAACTTGTGTGAGCTTTGAAAGGCGTCATGTTCTTTGAGGACTAAAA
1 GTGCCACCAACTCGTGTGAGCTTTGAAAGGCGTCATGCTCTTTGAGGACTAAAA
1102121 GGTGAAAAGA
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
55 49 1.00
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.28
Consensus pattern (55 bp):
GTGCCACCAACTCGTGTGAGCTTTGAAAGGCGTCATGCTCTTTGAGGACTAAAAA
Found at i:1102250 original size:210 final size:210
Alignment explanation
Indices: 1102094--1102484 Score: 674
Period size: 210 Copynumber: 1.9 Consensus size: 210
1102084 GAGCTTTGAA
* *
1102094 AGGCGTCATGTTCTTTGAGGACTAAAAGGTGAAAAGAGAAAGCGTCCTACTCTTTGAGGACTAGA
1 AGGCGTCATGCTCTTTGAGGACTAAAAGGTGAAAAGAGAAAACGTCCTACTCTTTGAGGACTAGA
* *
1102159 AGGTGCCACCAACTTGTGTGGGCTTTAAAGGGAAAAGGCATCCTACTCCTTGAGGATTGAAAGAT
66 AGGTGCCACCAACTTGTGTGAGCTTTAAAGGGAAAAGGCATCCTACTCCTTGAGGAATGAAAGAT
** **
1102224 GCCACCAACTTGTGTGGGCCTTGAAAGGCGTCTTGCTCTTTGAGGACTGGAGGGTGCCACCAACT
131 GCCACCAACTTGTGTGGGCCTTGAAAGGCGTCTTGCTCTTTGAGGACTAAAAAGTGCCACCAACT
1102289 TGTGTGAGCTTTGAA
196 TGTGTGAGCTTTGAA
* * * *
1102304 AGGCGTCCTGCTCTTTGAGGACTAAAGGGTGAAAAGAGAAAACGTCCTGCTCTTTGAGGAGTAGA
1 AGGCGTCATGCTCTTTGAGGACTAAAAGGTGAAAAGAGAAAACGTCCTACTCTTTGAGGACTAGA
1102369 AGGTGCCACCAACTTGTGTGAGCTTTAAAGGGAAAAGGCATCCTACTCCTTGAGGAATGAAAGAT
66 AGGTGCCACCAACTTGTGTGAGCTTTAAAGGGAAAAGGCATCCTACTCCTTGAGGAATGAAAGAT
1102434 GCCACCAACTTGTGTGGGCCTTGAAAGGCGTCTTGCTCTTTGAGGACTAAA
131 GCCACCAACTTGTGTGGGCCTTGAAAGGCGTCTTGCTCTTTGAGGACTAAA
1102485 GGGTGAAAGG
Statistics
Matches: 171, Mismatches: 10, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
210 171 1.00
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (210 bp):
AGGCGTCATGCTCTTTGAGGACTAAAAGGTGAAAAGAGAAAACGTCCTACTCTTTGAGGACTAGA
AGGTGCCACCAACTTGTGTGAGCTTTAAAGGGAAAAGGCATCCTACTCCTTGAGGAATGAAAGAT
GCCACCAACTTGTGTGGGCCTTGAAAGGCGTCTTGCTCTTTGAGGACTAAAAAGTGCCACCAACT
TGTGTGAGCTTTGAA
Found at i:1102282 original size:55 final size:55
Alignment explanation
Indices: 1102131--1102326 Score: 223
Period size: 55 Copynumber: 3.5 Consensus size: 55
1102121 GGTGAAAAGA
* *
1102131 GAAA-GCGTCCTACTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTT
1 GAAAGGCGTCCTGCTCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTT
* * * * * * *
1102185 AAAGGGAAAAGGCATCCTACTCCTTGAGGATTGAAAGATGCCACCAACTTGTGTGGGCCTT
1 -----G-AAAGGCGTCCTGCTCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTT
* * *
1102246 GAAAGGCGTCTTGCTCTTTGAGGACTGGAGGGTGCCACCAACTTGTGTGAGCTTT
1 GAAAGGCGTCCTGCTCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTT
1102301 GAAAGGCGTCCTGCTCTTTGAGGACT
1 GAAAGGCGTCCTGCTCTTTGAGGACT
1102327 AAAGGGTGAA
Statistics
Matches: 117, Mismatches: 18, Indels: 8
0.82 0.13 0.06
Matches are distributed among these distances:
55 69 0.59
56 1 0.01
59 1 0.01
60 3 0.03
61 43 0.37
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (55 bp):
GAAAGGCGTCCTGCTCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTT
Found at i:1102406 original size:155 final size:155
Alignment explanation
Indices: 1102247--1104372 Score: 2525
Period size: 155 Copynumber: 13.4 Consensus size: 155
1102237 GTGGGCCTTG
* * * * *
1102247 AAAGGCGTCTTGCTCTTTGAGGACTGGAGGGTGCCACCAACTTGTGTGAGCTTTGAAAGGCGTCC
1 AAAGGCATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* * *
1102312 TGCTCTTTGAGGACTAAAGGGTGAAAAGAGAAAACGTCCTGCTCTTTGAGGAGTAGAAGGTGCCA
66 TGCTCTTTGAGGACTAAAGGGTGAAAAGAGAGAGCGTCCTGCTCTTTGAGGACTAGAAGGTGCCA
* *
1102377 CCAACTTGTGTGAGCTTTAAAGGGA
131 CCAACTTGTGTGGGCTTTAAAAGGA
* * * * * *
1102402 AAAGGCATCCTACTCCTTGAGGAATGAAAGATGCCACCAACTTGTGTGGGCCTTGAAAGGCGTCT
1 AAAGGCATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* * *
1102467 TGCTCTTTGAGGACTAAAGGGTGAAAGGAGAGAGCGTCATGCTCTTTGTGGACTAGAAGGTGCCA
66 TGCTCTTTGAGGACTAAAGGGTGAAAAGAGAGAGCGTCCTGCTCTTTGAGGACTAGAAGGTGCCA
*
1102532 CCAACTTGTATGGGCTTTAAAAGGA
131 CCAACTTGTGTGGGCTTTAAAAGGA
* * *
1102557 AAAGGCATCCTGCTCGTTGAGGACAGAGAA-GTGCCACCAACTCGTGTGGGCTTTGAAAAGAAGA
1 AAAGGCATCCTGCTCTTTGAGGACTGA-AAGGTGCCACCAACTTGTGTGGGCTTT-----G-A-A
* ** * *
1102621 AGGCGTCCTGCTCTTTAAGGACTGGAGGGTGCCACCAACTCGTATGGGCTTTGAAAGGCGTCCTG
58 AGGCGTCCTGCTCTTTGAGGACTAAAGGGTG--A--AA-----A---G---AGAGA-GCGTCCTG
* *
1102686 CTCTTTGAGGACTAAAAGGTGCCACCAACTTGTATGGGCTTT------A
107 CTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGA
* *
1102729 AAAGGCGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGACGTCC
1 AAAGGCATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* * * *
1102794 TGCTCTTTGAGAAATAAAGGGTGAAAAGAGAGAGCATCCTGCTCTTTAAGGACTAGAAGGTGCCA
66 TGCTCTTTGAGGACTAAAGGGTGAAAAGAGAGAGCGTCCTGCTCTTTGAGGACTAGAAGGTGCCA
1102859 CCAACTTGTGTGGGCTTTAAAAGGA
131 CCAACTTGTGTGGGCTTTAAAAGGA
* *
1102884 AAAGGCATCTTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTATGGGCTTTGAAAGGCGTCC
1 AAAGGCATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* * * *
1102949 TACTCTTTGAGGACTAAAGGGTGAAAGGAGAGAGCAT-CTAGTTCTTTGAGGACTAGAAGGTGCC
66 TGCTCTTTGAGGACTAAAGGGTGAAAAGAGAGAGCGTCCT-GCTCTTTGAGGACTAGAAGGTGCC
1103013 ACCAACTTGTGTGGGCTTTAAAAGGA
130 ACCAACTTGTGTGGGCTTTAAAAGGA
*
1103039 AAAGGCATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACATGTGTGGGCTTTGAAAGGCGTCC
1 AAAGGCATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* * * *
1103104 TGCTCTTTGAGAACTAAAGGGTGAAAGGAGAGAGCGTCATGCTTTTTGAGGACTAGAAGGTGCCA
66 TGCTCTTTGAGGACTAAAGGGTGAAAAGAGAGAGCGTCCTGCTCTTTGAGGACTAGAAGGTGCCA
*
1103169 CCAACTTGTATGGGCTTTAAAAGGA
131 CCAACTTGTGTGGGCTTTAAAAGGA
* * *
1103194 AAAGGCATCCTGCTCGTTGAGGACAGAGAA-GTGCCACCAACTCGTGTGGGCTTTGAAAAGAAGA
1 AAAGGCATCCTGCTCTTTGAGGACTGA-AAGGTGCCACCAACTTGTGTGGGCTTT-----G-A-A
* ** * *
1103258 AGGCGTCCTGCTCTTTTAGGACTGGAGGGTGCCACCAACTCGTATGGGCTTTGAAAGGCGTCCTG
58 AGGCGTCCTGCTCTTTGAGGACTAAAGGGTG--A--AA-----A---G---AGAGA-GCGTCCTG
* *
1103323 CTCTTTGAGGACTAAAAGGTGCCACCAATTTGTGTGGGCTTT------A
107 CTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGA
*
1103366 AAAGGCGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
1 AAAGGCATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* * *
1103431 TGCTCTTTGAGAACTAAAGGGTGAAAAGAGAAAGCGTCCTGCTCTTTGAGGACTAGAAGGTGTCA
66 TGCTCTTTGAGGACTAAAGGGTGAAAAGAGAGAGCGTCCTGCTCTTTGAGGACTAGAAGGTGCCA
1103496 CCAACTTGTGTGGGCTTTAAAAGGA
131 CCAACTTGTGTGGGCTTTAAAAGGA
* * * * *
1103521 AAAGGCATCCTACTCCTTGAGGATTGAAAGATGCCACCAACTTGTGTGGGAC-TTGAAAGGCATC
1 AAAGGCATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGG-CTTTGAAAGGCGTC
* * *
1103585 TTGCTCTTTGAGGACTAAAGGGTGAAAGGAGAGAGCGTCCTGTTCTTTGAGGACTAGAAGGTGCC
65 CTGCTCTTTGAGGACTAAAGGGTGAAAAGAGAGAGCGTCCTGCTCTTTGAGGACTAGAAGGTGCC
1103650 ACCAACTTGTGTGGGCTTTAAAAGGA
130 ACCAACTTGTGTGGGCTTTAAAAGGA
* * *
1103676 AAAGGCATCCTACTCTTTGAGGACTGAAAGGTGCCACCAACATGTGTGGGCTTTGAAAGGTGTCC
1 AAAGGCATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* * * * *
1103741 TACTCTTTGAGAACTAAAGGGTGAAAGGAGAGAGTGTCCTGTTCTTTGAGGACTAGAAGGTGCCA
66 TGCTCTTTGAGGACTAAAGGGTGAAAAGAGAGAGCGTCCTGCTCTTTGAGGACTAGAAGGTGCCA
*
1103806 CCAACTTGTGTGGGCTTTAAAATGA
131 CCAACTTGTGTGGGCTTTAAAAGGA
* *
1103831 AATGGCATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCATTGAAAGGCGTCC
1 AAAGGCATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* *
1103896 TGCTCTTTGAGGACTAAAGGGTGAAAGGAGAGAGCGTCCTACTCTTTGAGGACTAGAAGGTGCCA
66 TGCTCTTTGAGGACTAAAGGGTGAAAAGAGAGAGCGTCCTGCTCTTTGAGGACTAGAAGGTGCCA
1103961 CCAACTTGTGTGGGCTTTAAAAGGA
131 CCAACTTGTGTGGGCTTTAAAAGGA
* **
1103986 AAATGCATCCTGCTCTTTGAGGACTGAGAA-GTGCCACCAACTCATGTGGGCTTTGAAAAGAAGA
1 AAAGGCATCCTGCTCTTTGAGGACTGA-AAGGTGCCACCAACTTGTGTGGGCTTTG---A-AAG-
* * ** * *
1104050 AGACGTCATGCTCTTTGAGGATTGGAGGGTGCCACCAACTTGTGTGAGCTTTGAAAGGCGTCCTG
60 -G-CGTCCTGCTCTTTGAGGACTAAAGGGTG--A--AA--------AG---AGAGA-GCGTCCTG
*
1104115 CTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTT------A
107 CTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGA
* * *
1104158 AAAGGCATCCTGCTCTTTGAGGACAGAAAGGTGCCACCAACTTATGTAGGCTTTGAAAGGCGTCC
1 AAAGGCATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* * *
1104223 TGCTCTTTAACGACTAAAGGGTGAAAAGAGAGAGCGTCCTGCTCTTTGAGGACTAGAAAGTGCCA
66 TGCTCTTTGAGGACTAAAGGGTGAAAAGAGAGAGCGTCCTGCTCTTTGAGGACTAGAAGGTGCCA
1104288 CCAACTTGTGTGGGCTTTAAAAGGA
131 CCAACTTGTGTGGGCTTTAAAAGGA
*
1104313 AAAGGCATCCTGCTCTTTGAGGACTGAAAGCTGCCACCAACTTGTGTGGGCTTTGAAAGG
1 AAAGGCATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGG
1104373 AAAAGACGTC
Statistics
Matches: 1707, Mismatches: 167, Indels: 194
0.83 0.08 0.09
Matches are distributed among these distances:
149 141 0.08
150 10 0.01
153 4 0.00
154 3 0.00
155 1044 0.61
156 10 0.01
158 1 0.00
159 3 0.00
160 2 0.00
161 9 0.01
162 80 0.05
163 3 0.00
164 3 0.00
165 76 0.04
166 9 0.01
167 2 0.00
168 3 0.00
169 1 0.00
171 6 0.00
172 145 0.08
174 3 0.00
177 9 0.01
178 140 0.08
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (155 bp):
AAAGGCATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
TGCTCTTTGAGGACTAAAGGGTGAAAAGAGAGAGCGTCCTGCTCTTTGAGGACTAGAAGGTGCCA
CCAACTTGTGTGGGCTTTAAAAGGA
Found at i:1102630 original size:62 final size:60
Alignment explanation
Indices: 1102500--1102804 Score: 304
Period size: 55 Copynumber: 5.3 Consensus size: 60
1102490 AAAGGAGAGA
* * *
1102500 GCGTCATGCTCTTTGTGGAC-TAGAAGGTGCCACCAACTTGTATGGGCTTTAAAAGGAAAAG
1 GCGTCCTGCTCTTTGAGGACAGAGAAGGTGCCACCAACTTGTATGGGCTTT-AAA-GAAAAG
* * * *
1102561 GCATCCTGCTCGTTGAGGACAGAGAA-GTGCCACCAACTCGTGTGGGCTTTGAAAAGAAGAAG
1 GCGTCCTGCTCTTTGAGGACAGAGAAGGTGCCACCAACTTGTATGGGCTTT--AAAGAA-AAG
* * * *
1102623 GCGTCCTGCTCTTTAAGGACTG-GAGGGTGCCACCAACTCGTATGGGCTTT---G-AAAG
1 GCGTCCTGCTCTTTGAGGACAGAGAAGGTGCCACCAACTTGTATGGGCTTTAAAGAAAAG
1102678 GCGTCCTGCTCTTTGAGGACTA-A-AAGGTGCCACCAACTTGTATGGGCTTT----AAAAG
1 GCGTCCTGCTCTTTGAGGAC-AGAGAAGGTGCCACCAACTTGTATGGGCTTTAAAGAAAAG
* *
1102733 GCGTCCTGCTCTTTGAGGACTGA-AAGGTGCCACCAACTTGTGTGGGCTTT---G-AAAG
1 GCGTCCTGCTCTTTGAGGACAGAGAAGGTGCCACCAACTTGTATGGGCTTTAAAGAAAAG
*
1102788 ACGTCCTGCTCTTTGAG
1 GCGTCCTGCTCTTTGAG
1102805 AAATAAAGGG
Statistics
Matches: 215, Mismatches: 20, Indels: 24
0.83 0.08 0.09
Matches are distributed among these distances:
55 118 0.55
56 1 0.00
57 1 0.00
61 43 0.20
62 52 0.24
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.26
Consensus pattern (60 bp):
GCGTCCTGCTCTTTGAGGACAGAGAAGGTGCCACCAACTTGTATGGGCTTTAAAGAAAAG
Found at i:1102683 original size:637 final size:633
Alignment explanation
Indices: 1101401--1104372 Score: 3464
Period size: 637 Copynumber: 4.7 Consensus size: 633
1101391 AGAGAGAGCA
* *
1101401 TCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCCT
1 TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTT------AAAAGGCGTCCT
* ** * *** * ** * *
1101466 GCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAG-GCGTCCTGCTCTTTGA
60 GCTCTTTGAGGACTAAAAGGTGAAAACAAAGCGTGTGCGCTTTGAAAGAG-GTCCACCACTTTGT
* * *
1101530 G-GAC--TAAAGGGTGAAAGGAGAGAGCGTCCAGTTCTTTGAGGACTAGAAGGTGCCACCAACTT
124 GAG-CTTTAAAGGGTGAAA--AGAGAGCATCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTT
* * *
1101592 GTGTGGGCTTTAAAAGGAAAAGGCATCCTGCTCTTTGAGGACTGAAATGCGCCACCAACATGTGT
186 GTGTGGGCTTT---A-GAAAAGGCATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGT
* * * *
1101657 GGGCTTTGAAAGGCATCCTGCTCTTTGAGAACTAAAAGGTGAAAGGAGAGAGCATCCTGTTCTTT
247 GGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTAAAGGGTGAAAGGAGAGAGCGTCCTGTTCTTT
* *
1101722 GAGGACAAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCTTGCTCTTTGAGG
312 GAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCCTGCTCTTTGAGG
* **
1101787 ACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTAAGGGCTAAAGGGT
377 ACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGAACTAAAGGGT
* *
1101852 GAAAGGAGAGAGCGTCATGCTCTTTGAGGATTAGAAGGTGCCACCAACTTATATGGGCTTTAAAA
442 GAAAGGAGAGAGCGTCATGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTATGGGCTTTAAAA
1101917 GGAAAAGGCATCCTGCTCGTTGAGGACAGAGAAGTGCCACCAACTCGTGTGGGCTTTGAAAAGAA
507 GGAAAAGGCATCCTGCTCGTTGAGGACAGAGAAGTGCCACCAACTCGTGTGGGCTTTGAAAAGAA
* * * *
1101982 GAAGGCATCCTGCTATTTAAGGACTGGAGGGTGCTACCAACTCGTGTGGGCTTTGAAAGGCG
572 GAAGGCGTCCTGCTCTTTAAGGACTGGAGGGTGCCACCAACTCGTATGGGCTTTGAAAGGCG
* * * * *
1102044 TCCTGCTCTTTGAGGACTAAAAAGTGCCACCAACTTGTGTGAGCTTTGAAAGGCGTCATGTTCTT
1 TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCTCTT
* * * *
1102109 TGAGGACTAAAAGGTGAAAAGAGAAAGCGTCCTACTCTTTGAGGACTAGAAGGTGCCACCAACTT
66 TGAGGACTAAAAGGTG-AAA-ACAAAGCGT-GTGCGCTTTGA--A--AG-AGGT-CCACC-ACTT
* * * * *
1102174 GTGTGGGCTTTAAA-GG-G-AAA-AG-GCATCCTACTCCTTGAGGA-TTGAAAGATGCCACCAAC
121 -TGTGAGCTTTAAAGGGTGAAAAGAGAGCATCCTGCTCTTTGAGGACTAG-AAGGTGCCACCAAC
* * * * * *
1102233 TTGTGTGGGCCTT-G-AAAGGCGTCTTGCTCTTTGAGGACTGGAGGGTGCCACCAACTTGTGTGA
184 TTGTGTGGGCTTTAGAAAAGGCATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGG
* * * *
1102296 GCTTTGAAAGGCGTCCTGCTCTTTGAGGACTAAAGGGTGAAAAGAGAAAACGTCCTGCTCTTTGA
249 GCTTTGAAAGGCGTCCTGCTCTTTGAGGACTAAAGGGTGAAAGGAGAGAGCGTCCTGTTCTTTGA
* * * * * *
1102361 GGAGTAGAAGGTGCCACCAACTTGTGTGAGCTTTAAAGGGAAAAGGCATCCTACTCCTTGAGGAA
314 GGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCCTGCTCTTTGAGGAC
* * * *
1102426 TGAAAGATGCCACCAACTTGTGTGGGCCTTGAAAGGCGTCTTGCTCTTTGAGGACTAAAGGGTGA
379 TGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGAACTAAAGGGTGA
*
1102491 AAGGAGAGAGCGTCATGCTCTTTGTGGACTAGAAGGTGCCACCAACTTGTATGGGCTTTAAAAGG
444 AAGGAGAGAGCGTCATGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTATGGGCTTTAAAAGG
1102556 AAAAGGCATCCTGCTCGTTGAGGACAGAGAAGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAGA
509 AAAAGGCATCCTGCTCGTTGAGGACAGAGAAGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAGA
1102621 AGGCGTCCTGCTCTTTAAGGACTGGAGGGTGCCACCAACTCGTATGGGCTTTGAAAGGCG
574 AGGCGTCCTGCTCTTTAAGGACTGGAGGGTGCCACCAACTCGTATGGGCTTTGAAAGGCG
*
1102681 TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTATGGGCTTTAAAAGGCGTCCTGCTCTT
1 TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCTCTT
* ** * *** * * ** * ***
1102746 TGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGACGTCCTGCTC-TT-TGAGAAAT
66 TGAGGACTAAAAGGTGAAAACAAAGCGTGTGCGCTTTGAAAGAGGTCCACCACTTTGTGAGCTTT
*
1102809 AAAGGGTGAAAAGAGAGAGCATCCTGCTCTTTAAGGACTAGAAGGTGCCACCAACTTGTGTGGGC
131 AAAGGGTG-AAA-AGAGAGCATCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGC
* *
1102874 TTTAAAAGGAAAAGGCATCTTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTATGGGCTTTG
194 TTT---A-GAAAAGGCATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTG
* *
1102939 AAAGGCGTCCTACTCTTTGAGGACTAAAGGGTGAAAGGAGAGAGCAT-CTAGTTCTTTGAGGACT
255 AAAGGCGTCCTGCTCTTTGAGGACTAAAGGGTGAAAGGAGAGAGCGTCCT-GTTCTTTGAGGACT
1103003 AGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCCTGCTCTTTGAGGACTGAAA
319 AGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCCTGCTCTTTGAGGACTGAAA
*
1103068 GGTGCCACCAACATGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGAACTAAAGGGTGAAAGGA
384 GGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGAACTAAAGGGTGAAAGGA
*
1103133 GAGAGCGTCATGCTTTTTGAGGACTAGAAGGTGCCACCAACTTGTATGGGCTTTAAAAGGAAAAG
449 GAGAGCGTCATGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTATGGGCTTTAAAAGGAAAAG
1103198 GCATCCTGCTCGTTGAGGACAGAGAAGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAGAAGGCG
514 GCATCCTGCTCGTTGAGGACAGAGAAGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAGAAGGCG
*
1103263 TCCTGCTCTTTTAGGACTGGAGGGTGCCACCAACTCGTATGGGCTTTGAAAGGCG
579 TCCTGCTCTTTAAGGACTGGAGGGTGCCACCAACTCGTATGGGCTTTGAAAGGCG
*
1103318 TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAATTTGTGTGGGCTTTAAAAGGCGTCCTGCTCTT
1 TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCTCTT
* ** * *** * ** * * *
1103383 TGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAG-GCGTCCTGCTCTTTGAGAAC--
66 TGAGGACTAAAAGGTGAAAACAAAGCGTGTGCGCTTTGAAAGAG-GTCCACCACTTTGTGAGCTT
* *
1103445 TAAAGGGTGAAAAGAGAAAGCGTCCTGCTCTTTGAGGACTAGAAGGTGTCACCAACTTGTGTGGG
130 TAAAGGGTGAAAAGAG--AGCATCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGG
* * * *
1103510 CTTTAAAAGGAAAAGGCATCCTACTCCTTGAGGATTGAAAGATGCCACCAACTTGTGTGGGAC-T
193 CTTT---A-GAAAAGGCATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGG-CTT
* *
1103574 TGAAAGGCATCTTGCTCTTTGAGGACTAAAGGGTGAAAGGAGAGAGCGTCCTGTTCTTTGAGGAC
253 TGAAAGGCGTCCTGCTCTTTGAGGACTAAAGGGTGAAAGGAGAGAGCGTCCTGTTCTTTGAGGAC
*
1103639 TAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCCTACTCTTTGAGGACTGAA
318 TAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCCTGCTCTTTGAGGACTGAA
* * *
1103704 AGGTGCCACCAACATGTGTGGGCTTTGAAAGGTGTCCTACTCTTTGAGAACTAAAGGGTGAAAGG
383 AGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGAACTAAAGGGTGAAAGG
* * * * * *
1103769 AGAGAGTGTCCTGTTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAATGAAAT
448 AGAGAGCGTCATGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTATGGGCTTTAAAAGGAAAA
* * * *
1103834 GGCATCCTGCTCTTTGAGGACTGA-AAGGTGCCACCAACTTGTGTGGGCATT-----G-A-AAGG
513 GGCATCCTGCTCGTTGAGGACAGAGAA-GTGCCACCAACTCGTGTGGGCTTTGAAAAGAAGAAGG
* ** * *
1103891 CGTCCTGCTCTTTGAGGACTAAAGGGTG-----AA-----A--GG---AGAGA-GCG
577 CGTCCTGCTCTTTAAGGACTGGAGGGTGCCACCAACTCGTATGGGCTTTGAAAGGCG
* * *
1103932 TCCTACTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAATGCATCCT
1 TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAA-G-----GCGTCCT
* ** * ** * * * ***
1103997 GCTCTTTGAGGACTGAGAA-GTGCCACCAACTCATGTGGGCTTTGAAAAGAAGAAGACGTCATGC
60 GCTCTTTGAGGACT-AAAAGGTGAAAACAAAGCGTGTGCGCTTTG-AAAGAGGTCCAC--CA--C
** ** * *
1104061 TCTT-TGAGGATTGGAGGGTGCCACCAACTTGTGTGAGCTTTGAAAGGCGTCCTGCTCTTTGAGG
119 T-TTGTGAGCTTTAAAGGGTG--A--AA--------A-----GAGA-GCATCCTGCTCTTTGAGG
* *
1104125 ACTAAAAGGTGCCACCAACTTGTGTGGGCTTT--AAAAGGCATCCTGCTCTTTGAGGACAGAAAG
165 ACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAGAAAAGGCATCCTGCTCTTTGAGGACTGAAAG
* * * * *
1104188 GTGCCACCAACTTATGTAGGCTTTGAAAGGCGTCCTGCTCTTTAACGACTAAAGGGTGAAAAGAG
230 GTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTAAAGGGTGAAAGGAG
* *
1104253 AGAGCGTCCTGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGG
295 AGAGCGTCCTGTTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGG
*
1104318 CATCCTGCTCTTTGAGGACTGAAAGCTGCCACCAACTTGTGTGGGCTTTGAAAGG
360 CATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGG
1104373 AAAAGACGTC
Statistics
Matches: 2053, Mismatches: 202, Indels: 154
0.85 0.08 0.06
Matches are distributed among these distances:
614 51 0.02
615 4 0.00
618 2 0.00
620 44 0.02
621 7 0.00
623 1 0.00
624 7 0.00
625 9 0.00
626 4 0.00
627 8 0.00
628 5 0.00
629 5 0.00
630 33 0.02
631 44 0.02
632 4 0.00
634 7 0.00
635 8 0.00
636 10 0.00
637 1614 0.79
638 7 0.00
639 7 0.00
640 7 0.00
642 4 0.00
643 131 0.06
644 6 0.00
645 3 0.00
646 4 0.00
647 5 0.00
648 5 0.00
649 3 0.00
650 4 0.00
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (633 bp):
TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCTCTT
TGAGGACTAAAAGGTGAAAACAAAGCGTGTGCGCTTTGAAAGAGGTCCACCACTTTGTGAGCTTT
AAAGGGTGAAAAGAGAGCATCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTT
TAGAAAAGGCATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGC
GTCCTGCTCTTTGAGGACTAAAGGGTGAAAGGAGAGAGCGTCCTGTTCTTTGAGGACTAGAAGGT
GCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCCTGCTCTTTGAGGACTGAAAGGTGCCA
CCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGAACTAAAGGGTGAAAGGAGAGAGCG
TCATGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTATGGGCTTTAAAAGGAAAAGGCATCCT
GCTCGTTGAGGACAGAGAAGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAGAAGGCGTCCTGCT
CTTTAAGGACTGGAGGGTGCCACCAACTCGTATGGGCTTTGAAAGGCG
Found at i:1102779 original size:110 final size:112
Alignment explanation
Indices: 1102500--1102804 Score: 341
Period size: 110 Copynumber: 2.6 Consensus size: 112
1102490 AAAGGAGAGA
* * *
1102500 GCGTCATGCTCTTTGTGGACT-AGAAGGTGCCACCAACTTGTATGGGCTTTAAAAGGAAAAGGCA
1 GCGTCCTGCTCTTTGAGGACTGA-AAGGTGCCACCAACTTGTATGGGCTTT-----G-AAAGGCG
* *
1102564 TCCTGCTCGTTGAGGACAGAGAAGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAGAAG
59 TCCTGCTCTTTGAGGACAGAGAAGTGCCACCAACTCGTATGGGCTTT----A-AAGAAG
* * * *
1102623 GCGTCCTGCTCTTTAAGGACTGGAGGGTGCCACCAACTCGTATGGGCTTTGAAAGGCGTCCTGCT
1 GCGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTATGGGCTTTGAAAGGCGTCCTGCT
*
1102688 CTTTGAGGACTA-A-AAGGTGCCACCAACTTGTATGGGCTTT-AA-AAG
66 CTTTGAGGAC-AGAGAA-GTGCCACCAACTCGTATGGGCTTTAAAGAAG
* *
1102733 GCGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGACGTCCTGCT
1 GCGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTATGGGCTTTGAAAGGCGTCCTGCT
1102798 CTTTGAG
66 CTTTGAG
1102805 AAATAAAGGG
Statistics
Matches: 163, Mismatches: 16, Indels: 19
0.82 0.08 0.10
Matches are distributed among these distances:
110 69 0.42
111 2 0.01
116 2 0.01
117 45 0.28
118 2 0.01
123 43 0.26
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.26
Consensus pattern (112 bp):
GCGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTATGGGCTTTGAAAGGCGTCCTGCT
CTTTGAGGACAGAGAAGTGCCACCAACTCGTATGGGCTTTAAAGAAG
Found at i:1102903 original size:792 final size:761
Alignment explanation
Indices: 1101249--1104371 Score: 2963
Period size: 792 Copynumber: 3.9 Consensus size: 761
1101239 AAAGAAAAAT
* * *
1101249 GCGTCCTACTCTTTAAGGACT-GAAGGGTGCCACCAACTTGTGTGGGCTTT------AAAAGGCG
1 GCGTCCTGCTCTTTGAGGACTAGAA-GGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCA
* * * * * * **
1101307 TCATGCTCTTTGAGGACTAAAATGTG-CCACCAA-T-TTGTGTGGGCTTTGAAAAGCGT-CCTGC
65 TCATGCTCTTTGAGGACTGAAAGGTGACCA-AAAGTCTTCTTTGGGC--T-AGAAG-GTGCCACC
* **
1101368 TCTTTGAGGACTAAAGGGTGAAAAGAGAGAGCATCCTGCTCTTTGAGGACTAGAAGGTGCCACCA
125 ACTTTGAGGACTAAAGGGTG--AA-AGAGAGCATCCTATTCTTTGAGGACTAGAAGGTGCCACCA
1101433 ACTTGTGTGGGCTTTAAAAGGAAAAGGCATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTT
187 ACTTGTGTGGGCTTT-----G-AAAGGCATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTT
* *
1101498 GTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTAAAGGGTGAAAGGAGAGAGCGTCCAGTT
246 GTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTAAAGGGTGAAAGGAGAGAGCGTCCTGCT
1101563 CTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCCTGCTCTTT
311 CTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCCTGCTCTTT
* * * *
1101628 GAGGACTGA-AATGCGCCACCAACAT-GTGTGGGCTTTGAAAGGCATCCTGCTCTTTGAGAACTA
376 GAGGAATGAGAA-GTGCCACCAAC-TCGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTA
* * * *
1101691 AAAGGTGAAAGGAGAGAGCATCCTGTTCTTTGAGGACAAGAAGGTGCCACCAACTTGTGTGGGCT
439 AAGGGTGAAAGGAGAGAGCGTCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCT
*
1101756 TTAAAAGGAAAAGGCATCTTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGA
504 TTAAAAGGAAAAGGCATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGA
* * * *
1101821 AAGGCGTCCTGCTCTTTAAGGGCTAAAGGGTG-AAAGGAGAGAGCGTCATGCTCTTTGAGGATTA
569 AAGGCGTCCTGCTCTTTAAGGACTAAAGGGTGAAAAGGAGAAAGCGTCCTGCTCTTTGAGGACTA
* * *
1101885 GAAGGTGCCACCAACTTATATGGGCTTTAAAAGGAAAAGGCATCCTGCTCGTTGAGGACAGAGAA
634 GAAGGTGCCACCAACTTGTATGGGCTTT---A--AAAAGGCATCCTGCTCCTTGAGGACTGA-AA
* * * **
1101950 -GTGCCACCAACTCGTGTGGGCTTTGAAAAGAAGAAGGCATCCTGCTATTTAAGGACTGGAGGGT
693 GGTGCCACCAACTTGTGTGGGCTTTG---A-AAG-A--CATCCTGCTCTTTGAGGACTAAAGGGT
* *
1102014 GCTACCAACTCGTGTGGGCTTTGAAA
751 G--A--AA--------GG---AGAGA
* * * *
1102040 GGCGTCCTGCTCTTTGAGGACTAAAAAGTGCCACCAACTTGTGTGAGCTTT-----G-AAAGGCG
1 -GCGTCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCA
* * **
1102099 TCATGTTCTTTGAGGACTAAAAGGTGAAAAGAGAAAGCGTCCTACTCTTTGAGGACTAGAAGGTG
65 TCATGCTCTTTGAGGACTGAAAGGTG--ACCA-AAA--GT-CT--TCTTTG-GG-CTAGAAGGTG
* * * * * *
1102164 CCACCAACTTGTGTGGGCTTTAAA-GG-GAAA-AG-GCATCCTACTCCTTGAGGA-TTGAAAGAT
120 CCACC-ACTT-TGAGGAC--TAAAGGGTGAAAGAGAGCATCCTATTCTTTGAGGACTAG-AAGGT
* * * * *
1102224 GCCACCAACTTGTGTGGGCCTTGAAAGGCGTCTTGCTCTTTGAGGACTGGAGGGTGCCACCAACT
180 GCCACCAACTTGTGTGGGCTTTGAAAGGCATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACT
* * * *
1102289 TGTGTGAGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTAAAGGGTGAAAAGAGAAAACGTCCTGC
245 TGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTAAAGGGTGAAAGGAGAGAGCGTCCTGC
* * * * *
1102354 TCTTTGAGGAGTAGAAGGTGCCACCAACTTGTGTGAGCTTTAAAGGGAAAAGGCATCCTACTCCT
310 TCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCCTGCTCTT
* * *
1102419 TGAGGAATGA-AAGATGCCACCAACTTGTGTGGGCCTTGAAAGGCGTCTTGCTCTTTGAGGACTA
375 TGAGGAATGAGAAG-TGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTA
* * *
1102483 AAGGGTGAAAGGAGAGAGCGTCATGCTCTTTGTGGACTAGAAGGTGCCACCAACTTGTATGGGCT
439 AAGGGTGAAAGGAGAGAGCGTCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCT
* * *
1102548 TTAAAAGGAAAAGGCATCCTGCTCGTTGAGGACAGAGAA-GTGCCACCAACTCGTGTGGGCTTTG
504 TTAAAAGGAAAAGGCATCCTGCTCTTTGAGGACTGA-AAGGTGCCACCAACTTGTGTGGGCTTT-
** *
1102612 AAAAGAAGAAGGCGTCCTGCTCTTTAAGGACTGGAGGGTGCCACCAACTCGTATGGGCTTTGAAA
567 ----G-A-AAGGCGTCCTGCTCTTTAAGGACTAAAGGGTG--A--AA-----A--GG---AGAAA
* *
1102677 GGCGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTATGGGCTTT-AAAAGGCGTCCTG
612 -GCGTCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTATGGGCTTTAAAAAGGCATCCTG
* * *
1102741 CTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGACGTCCTGCTCTTTGAGA
676 CTCCTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGACATCCTGCTCTTTGAGG
* *
1102806 AATAAAGGGTGAAAAGAGAGA
741 ACTAAAGGGTGAAAGGAGAGA
* *
1102827 GCATCCTGCTCTTTAAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCAT
1 GCGTCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCAT
* * * * * * *
1102892 CTTGCTCTTTGAGGACTGAAAGGTG-CCACCAA--CTTGTATGGGCTTTGAAAGGCGTCCTA-CT
66 CATGCTCTTTGAGGACTGAAAGGTGACCA-AAAGTCTTCTTTGGGC-TAG-AAGGTG-CC-ACCA
1102953 CTTTGAGGACTAAAGGGTGAAAGGAGAGAGCAT-CTAGTTCTTTGAGGACTAGAAGGTGCCACCA
126 CTTTGAGGACTAAAGGGTG-AA--AGAGAGCATCCTA-TTCTTTGAGGACTAGAAGGTGCCACCA
*
1103017 ACTTGTGTGGGCTTTAAAAGGAAAAGGCATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACAT
187 ACTTGTGTGGGCTTT-----G-AAAGGCATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTT
* *
1103082 GTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGAACTAAAGGGTGAAAGGAGAGAGCGTCATGCT
246 GTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTAAAGGGTGAAAGGAGAGAGCGTCCTGCT
* * *
1103147 TTTTGAGGACTAGAAGGTGCCACCAACTTGTATGGGCTTTAAAAGGAAAAGGCATCCTGCTCGTT
311 CTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCCTGCTCTTT
*
1103212 GAGGACA-GAGAAGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAGAAGGCGTCCTGCTCTTTTA
376 GAGGA-ATGAGAAGTGCCACCAACTCGTGTGGGCTTT-----G-A-AAGGCGTCCTGCTCTTTGA
** * * *
1103276 GGACTGGAGGGTGCCACCAACTCGTATGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTAAAAG
433 GGACTAAAGGGTG-----AA-----A--GG---AGAGA-GCGTCCTGCTCTTTGAGGACTAGAAG
* *
1103341 GTGCCACCAATTTGTGTGGGCTTT------AAAAGGCGTCCTGCTCTTTGAGGACTGAAAGGTGC
482 GTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCCTGCTCTTTGAGGACTGAAAGGTGC
* *
1103400 CACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGAACTAAAGGGTGAAAA-GAGAAA
547 CACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTAAGGACTAAAGGGTGAAAAGGAGAAA
* *
1103464 GCGTCCTGCTCTTTGAGGACTAGAAGGTGTCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCAT
612 GCGTCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTATGGGCTTT---A--AAAAGGCAT
* * * * *
1103529 CCTACTCCTTGAGGATTGAAAGATGCCACCAACTTGTGTGGGAC-TTGAAAGGCATCTTGCTCTT
672 CCTGCTCCTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGG-CTTTGAAAGACATCCTGCTCTT
1103593 TGAGGACTAAAGGGTGAAAGGAGAGA
736 TGAGGACTAAAGGGTGAAAGGAGAGA
*
1103619 GCGTCCTGTTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCAT
1 GCGTCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCAT
* * * * * * * *
1103684 CCTACTCTTTGAGGACTGAAAGGTG-CCACCAA--CATGTGTGGGCTTTGAAAGGTGTCCTA-CT
66 CATGCTCTTTGAGGACTGAAAGGTGACCA-AAAGTCTTCTTTGGGC-TAG-AAGGTG-CC-ACCA
* *
1103745 CTTTGAGAACTAAAGGGTGAAAGGAGAG-AGTGTCCTGTTCTTTGAGGACTAGAAGGTGCCACCA
126 CTTTGAGGACTAAAGGGTGAAA-GAGAGCA---TCCTATTCTTTGAGGACTAGAAGGTGCCACCA
1103809 ACTTGTGTGGGCTTTAAAATGAAATGGCATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTT
187 ACTTGTGTGGGC-TT----TGAAA-GGCATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTT
* *
1103874 GTGTGGGCATTGAAAGGCGTCCTGCTCTTTGAGGACTAAAGGGTGAAAGGAGAGAGCGTCCTACT
246 GTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTAAAGGGTGAAAGGAGAGAGCGTCCTGCT
*
1103939 CTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAATGCATCCTGCTCTTT
311 CTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCCTGCTCTTT
* * *
1104004 GAGGACTGAGAAGTGCCACCAACTCATGTGGGCTTTGAAAAGAAGAAGACGTCATGCTCTTTGAG
376 GAGGAATGAGAAGTGCCACCAACTCGTGTGGGCTTTG---A-AAG--G-CGTCCTGCTCTTTGAG
* ** * *
1104069 GATTGGAGGGTGCCACCAACTTGTGTGAGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTAAAAGG
434 GACTAAAGGGTG--A--AA-----G-GA-----GAGA-GCGTCCTGCTCTTTGAGGACTAGAAGG
*
1104134 TGCCACCAACTTGTGTGGGCTTT------AAAAGGCATCCTGCTCTTTGAGGACAGAAAGGTGCC
483 TGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCCTGCTCTTTGAGGACTGAAAGGTGCC
* * * *
1104193 ACCAACTTATGTAGGCTTTGAAAGGCGTCCTGCTCTTTAACGACTAAAGGGTGAAAA-GAGAGAG
548 ACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTAAGGACTAAAGGGTGAAAAGGAGAAAG
* *
1104257 CGTCCTGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATC
613 CGTCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTATGGGCTTT---A--AAAAGGCATC
* *
1104322 CTGCTCTTTGAGGACTGAAAGCTGCCACCAACTTGTGTGGGCTTTGAAAG
673 CTGCTCCTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAG
1104372 GAAAAGACGT
Statistics
Matches: 1997, Mismatches: 200, Indels: 268
0.81 0.08 0.11
Matches are distributed among these distances:
779 4 0.00
780 3 0.00
781 10 0.01
782 14 0.01
783 3 0.00
784 4 0.00
785 5 0.00
786 131 0.07
787 10 0.01
789 15 0.01
790 8 0.00
791 12 0.01
792 1345 0.67
793 15 0.01
795 3 0.00
797 5 0.00
798 49 0.02
799 59 0.03
800 6 0.00
801 9 0.00
802 57 0.03
803 9 0.00
804 9 0.00
805 7 0.00
806 1 0.00
808 4 0.00
809 99 0.05
811 4 0.00
814 6 0.00
815 91 0.05
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (761 bp):
GCGTCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCAT
CATGCTCTTTGAGGACTGAAAGGTGACCAAAAGTCTTCTTTGGGCTAGAAGGTGCCACCACTTTG
AGGACTAAAGGGTGAAAGAGAGCATCCTATTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTG
GGCTTTGAAAGGCATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAA
GGCGTCCTGCTCTTTGAGGACTAAAGGGTGAAAGGAGAGAGCGTCCTGCTCTTTGAGGACTAGAA
GGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCCTGCTCTTTGAGGAATGAGAAGTG
CCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTAAAGGGTGAAAGGAGAGA
GCGTCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCAT
CCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTT
AAGGACTAAAGGGTGAAAAGGAGAAAGCGTCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTT
GTATGGGCTTTAAAAAGGCATCCTGCTCCTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCT
TTGAAAGACATCCTGCTCTTTGAGGACTAAAGGGTGAAAGGAGAGA
Found at i:1102922 original size:61 final size:61
Alignment explanation
Indices: 1102827--1102943 Score: 182
Period size: 61 Copynumber: 1.9 Consensus size: 61
1102817 AAAAGAGAGA
*
1102827 GCATCCTGCTCTTTAAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAG
1 GCATCCTGCTCTTTAAGGACTAGAAGGTGCCACCAACTTGTATGGGCTTTAAAAGGAAAAG
* * *
1102888 GCATCTTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTATGGGCTTTGAAAGG
1 GCATCCTGCTCTTTAAGGACTAG-AAGGTGCCACCAACTTGTATGGGCTTTAAAAGG
1102944 CGTCCTACTC
Statistics
Matches: 51, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
60 1 0.02
61 50 0.98
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.26
Consensus pattern (61 bp):
GCATCCTGCTCTTTAAGGACTAGAAGGTGCCACCAACTTGTATGGGCTTTAAAAGGAAAAG
Found at i:1103267 original size:62 final size:58
Alignment explanation
Indices: 1103137--1103441 Score: 285
Period size: 55 Copynumber: 5.3 Consensus size: 58
1103127 AAAGGAGAGA
* * * *
1103137 GCGTCATGCTTTTTGAGGACTAGAAGGTGCCACCAACTTGTATGGGCTTTAAAAGGAAAAG
1 GCGTCCTGCTCTTTGAGGAC-AGAAAGTGCCACCAACTTGTGTGGGCTTT-AAA-GAAAAG
* * *
1103198 GCATCCTGCTCGTTGAGGACAGAGAAGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAGAAG
1 GCGTCCTGCTCTTTGAGGACAGA-AAGTGCCACCAACTTGTGTGGGCTTT--AAAGAA-AAG
* * ** * *
1103260 GCGTCCTGCTCTTTTAGGACTGGAGGGTGCCACCAACTCGTATGGGCTTT---G-AAAG
1 GCGTCCTGCTCTTTGAGGAC-AGAAAGTGCCACCAACTTGTGTGGGCTTTAAAGAAAAG
*
1103315 GCGTCCTGCTCTTTGAGGACTA-AAAGGTGCCACCAATTTGTGTGGGCTTT----AAAAG
1 GCGTCCTGCTCTTTGAGGAC-AGAAA-GTGCCACCAACTTGTGTGGGCTTTAAAGAAAAG
*
1103370 GCGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT---G-AAAG
1 GCGTCCTGCTCTTTGAGGACAGAAA-GTGCCACCAACTTGTGTGGGCTTTAAAGAAAAG
1103425 GCGTCCTGCTCTTTGAG
1 GCGTCCTGCTCTTTGAG
1103442 AACTAAAGGG
Statistics
Matches: 213, Mismatches: 23, Indels: 22
0.83 0.09 0.09
Matches are distributed among these distances:
54 1 0.00
55 116 0.54
56 1 0.00
57 1 0.00
60 3 0.01
61 42 0.20
62 47 0.22
63 2 0.01
ACGTcount: A:0.23, C:0.21, G:0.30, T:0.26
Consensus pattern (58 bp):
GCGTCCTGCTCTTTGAGGACAGAAAGTGCCACCAACTTGTGTGGGCTTTAAAGAAAAG
Found at i:1103344 original size:55 final size:55
Alignment explanation
Indices: 1103257--1103453 Score: 295
Period size: 55 Copynumber: 3.6 Consensus size: 55
1103247 TGAAAAGAAG
* ** * * *
1103257 AAGGCGTCCTGCTCTTTTAGGACTGGAGGGTGCCACCAACTCGTATGGGCTTTGA
1 AAGGCGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTGA
* *
1103312 AAGGCGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAATTTGTGTGGGCTTTAA
1 AAGGCGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTGA
*
1103367 AAGGCGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGA
1 AAGGCGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTGA
* *
1103422 AAGGCGTCCTGCTCTTTGAGAACTAAAGGGTG
1 AAGGCGTCCTGCTCTTTGAGGACTAAAAGGTG
1103454 AAAAGAGAAA
Statistics
Matches: 128, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
55 128 1.00
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.27
Consensus pattern (55 bp):
AAGGCGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTGA
Found at i:1103417 original size:110 final size:112
Alignment explanation
Indices: 1103137--1103453 Score: 356
Period size: 110 Copynumber: 2.8 Consensus size: 112
1103127 AAAGGAGAGA
* * *
1103137 GCGTCATGCTTTTTGAGGACT-AGAAGGTGCCACCAACTTGTATGGGCTTTAAAAGGAAAAGGCA
1 GCGTCCTGCTCTTTGAGGACTGA-AAGGTGCCACCAACTTGTATGGGCTTT-----G-AAAGGCG
*
1103201 TCCTGCTCGTTGAGGAC-AGAGAA-GTGCCACCAACTCGTGTGGGCTTTGAAAAGAAGAAG
59 TCCTGCTCTTTGAGGACTA-A-AAGGTGCCACCAACTCGTGTGGGCTTT----A-AAGAAG
* * * *
1103260 GCGTCCTGCTCTTTTAGGACTGGAGGGTGCCACCAACTCGTATGGGCTTTGAAAGGCGTCCTGCT
1 GCGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTATGGGCTTTGAAAGGCGTCCTGCT
* *
1103325 CTTTGAGGACTAAAAGGTGCCACCAATTTGTGTGGGCTTT-AA-AAG
66 CTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTAAAGAAG
*
1103370 GCGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCT
1 GCGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTATGGGCTTTGAAAGGCGTCCTGCT
* *
1103435 CTTTGAGAACTAAAGGGTG
66 CTTTGAGGACTAAAAGGTG
1103454 AAAAGAGAAA
Statistics
Matches: 174, Mismatches: 17, Indels: 19
0.83 0.08 0.09
Matches are distributed among these distances:
110 80 0.46
111 2 0.01
116 2 0.01
117 45 0.26
118 2 0.01
123 43 0.25
ACGTcount: A:0.24, C:0.21, G:0.30, T:0.26
Consensus pattern (112 bp):
GCGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTATGGGCTTTGAAAGGCGTCCTGCT
CTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTAAAGAAG
Found at i:1103848 original size:61 final size:55
Alignment explanation
Indices: 1103777--1103915 Score: 174
Period size: 61 Copynumber: 2.4 Consensus size: 55
1103767 GGAGAGAGTG
*
1103777 TCCTGTTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAATGAAATGGCA
1 TCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGC-----AATGAAA-GGCA
* *
1103838 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCATTGAAAGGCG
1 TCCTGCTCTTTGAGGACTAG-AAGGTGCCACCAACTTGTGTGGGCAATGAAAGGCA
1103893 TCCTGCTCTTTGAGGACTA-AAGG
1 TCCTGCTCTTTGAGGACTAGAAGG
1103916 GTGAAAGGAG
Statistics
Matches: 73, Mismatches: 3, Indels: 11
0.84 0.03 0.13
Matches are distributed among these distances:
54 4 0.05
55 21 0.29
56 6 0.08
60 1 0.01
61 41 0.56
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (55 bp):
TCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCAATGAAAGGCA
Found at i:1104067 original size:62 final size:59
Alignment explanation
Indices: 1103932--1104230 Score: 293
Period size: 55 Copynumber: 5.2 Consensus size: 59
1103922 GGAGAGAGCG
* * *
1103932 TCCTACTCTTTGAGGACT-AGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAATGCA
1 TCCTGCTCTTTGAGGACTGAGAAGGTGCCACCAACTTGTGTGGGCTTT-GAA--AAAAGGCA
** *
1103993 TCCTGCTCTTTGAGGACTGAGAA-GTGCCACCAACTCATGTGGGCTTTGAAAAGAAGAAGACG
1 TCCTGCTCTTTGAGGACTGAGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAA-AAG--G-CA
* * * * *
1104055 TCATGCTCTTTGAGGATTG-GAGGGTGCCACCAACTTGTGTGAGCTTTG---AAAGGCG
1 TCCTGCTCTTTGAGGACTGAGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAAAGGCA
*
1104110 TCCTGCTCTTTGAGGACT-AAAAGGTGCCACCAACTTGTGTGGGCTTT---AAAAGGCA
1 TCCTGCTCTTTGAGGACTGAGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAAAGGCA
* * * *
1104165 TCCTGCTCTTTGAGGACAGA-AAGGTGCCACCAACTTATGTAGGCTTTG---AAAGGCG
1 TCCTGCTCTTTGAGGACTGAGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAAAGGCA
1104220 TCCTGCTCTTT
1 TCCTGCTCTTT
1104231 AACGACTAAA
Statistics
Matches: 206, Mismatches: 22, Indels: 26
0.81 0.09 0.10
Matches are distributed among these distances:
55 108 0.52
56 2 0.01
58 5 0.02
59 3 0.01
60 2 0.01
61 42 0.20
62 44 0.21
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (59 bp):
TCCTGCTCTTTGAGGACTGAGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAAAGGCA
Found at i:1104432 original size:60 final size:60
Alignment explanation
Indices: 1104256--1104885 Score: 747
Period size: 60 Copynumber: 10.3 Consensus size: 60
1104246 AAAAGAGAGA
* *
1104256 GCGTCCTGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAG
1 GCGTCCTGCTCTTTGAGGACTA-AAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAG
* * * *
1104317 GCATCCTGCTCTTTGAGGACTGAAAGCTGCCACCAACTTGTGTGGGCTTTGAAAGGAAAAG
1 GCGTCCTGCTCTTTGAGGACT-AAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAG
* * * * * * * * *
1104378 ACGTCTTGCTTTTTAAGAACAAAAGGTGCCACCAACTTGTGTAGGCTTTAAAAGGAAGAG
1 GCGTCCTGCTCTTTGAGGACTAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAG
* * *
1104438 GTGTCCTGCTCTTTGAGGACTAAAGGTGCCACCAACTCGTGTGGGCGTTAAAAAGAAAAAAG
1 GCGTCCTGCTCTTTGAGGACTAAAGGTGCCACCAACTTGTGTGGGC-TTTAAAAG-AAAAAG
* * * * * *
1104500 GCATCCTGCTCTTTGAGGACTGAAGCTGCCACCAACTTGTGTGAGCTTTAAAAGGAAGAG
1 GCGTCCTGCTCTTTGAGGACTAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAG
* * *
1104560 GTGTCCTGCTCTTTGAGGACTAAAGGTGCCACCAACTCGTGTGGGCTTTAAAAAAAAAAG
1 GCGTCCTGCTCTTTGAGGACTAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAG
* * *
1104620 GCATCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTCGTGTGGGCTTTAAAAAGAAAAAAG
1 GCGTCCTGCTCTTTGAGGACTAAAGGTGCCACCAACTTGTGTGGGCTTT-AAAAG-AAAAAG
* * * * *
1104682 GCGTCCTGCTCTTTGAGAACTGAAGGTGCCACCAACTTATGTGGGCTTTAAAAGGAAGAG
1 GCGTCCTGCTCTTTGAGGACTAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAG
* * * **
1104742 GTGTCCTACTCTTTGAGGACTAAAGGTTCCACCAACTCATGTGGGCTTTAAAAAGAAAAAG
1 GCGTCCTGCTCTTTGAGGACTAAAGGTGCCACCAACTTGTGTGGGCTTT-AAAAGAAAAAG
* * ** *
1104803 GCATCTTGCTCTTTGAGGACTGGAGGTGCCACCAACTTGTGTGGGTTTTGAAAAGAAAAAAG
1 GCGTCCTGCTCTTTGAGGACTAAAGGTGCCACCAACTTGTGTGGGCTTT-AAAAG-AAAAAG
** *
1104865 GTTTCTTGCTCTTTGAGGACT
1 GCGTCCTGCTCTTTGAGGACT
1104886 GGAAGGGCTA
Statistics
Matches: 486, Mismatches: 76, Indels: 13
0.85 0.13 0.02
Matches are distributed among these distances:
60 220 0.45
61 145 0.30
62 121 0.25
ACGTcount: A:0.29, C:0.20, G:0.26, T:0.26
Consensus pattern (60 bp):
GCGTCCTGCTCTTTGAGGACTAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAG
Found at i:1104554 original size:122 final size:121
Alignment explanation
Indices: 1104259--1104891 Score: 759
Period size: 122 Copynumber: 5.2 Consensus size: 121
1104249 AGAGAGAGCG
* *
1104259 TCCTGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCCT
1 TCCTGCTCTTTGAGGACT-GAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGTCCT
* * * * *
1104324 GCTCTTTGAGGACTGAAAGCTGCCACCAACTTGTGTGGGCTTTGAAAG-GAAAAGACG
65 GCTCTTTGAGGACT-AAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAAGGCA
* * * * ** * * *
1104381 TCTTGCTTTTTAAGAACAAAAGGTGCCACCAACTTGTGTAGGCTTTAAAAGGAAGAGGTGTCCTG
1 TCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGTCCTG
* *
1104446 CTCTTTGAGGACTAAAGGTGCCACCAACTCGTGTGGGCGTTAAAAAGAAAAAAGGCA
66 CTCTTTGAGGACTAAAGGTGCCACCAACTTGTGTGGGC-TTTAAAAGAAAAAAGGCA
* * * *
1104503 TCCTGCTCTTTGAGGACTGAAGCTGCCACCAACTTGTGTGAGCTTTAAAAGGAAGAGGTGTCCTG
1 TCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGTCCTG
*
1104568 CTCTTTGAGGACTAAAGGTGCCACCAACTCGTGTGGGCTTTAAAA-AAAAAAGGCA
66 CTCTTTGAGGACTAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAAGGCA
* *
1104623 TCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTCGTGTGGGCTTTAAAAAGAAAAAAGGCGTCC
1 TCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTT-AAAAG-GAAAAGGCGTCC
* * * * * **
1104688 TGCTCTTTGAGAACTGAAGGTGCCACCAACTTATGTGGGCTTTAAAAG-GAAGAGGTG
64 TGCTCTTTGAGGACTAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAAGGCA
* * * ** * * *
1104745 TCCTACTCTTTGAGGACTAAAGGTTCCACCAACTCATGTGGGCTTTAAAAAGAAAAAGGCATCTT
1 TCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTT-AAAAGGAAAAGGCGTCCT
** * **
1104810 GCTCTTTGAGGACTGGAGGTGCCACCAACTTGTGTGGGTTTTGAAAAGAAAAAAGGTT
65 GCTCTTTGAGGACTAAAGGTGCCACCAACTTGTGTGGGCTTT-AAAAGAAAAAAGGCA
*
1104868 TCTTGCTCTTTGAGGACTGGAAGG
1 TCCTGCTCTTTGAGGACT-GAAGG
1104892 GCTAAAAGAG
Statistics
Matches: 445, Mismatches: 58, Indels: 14
0.86 0.11 0.03
Matches are distributed among these distances:
120 76 0.17
121 120 0.27
122 223 0.50
123 22 0.05
124 4 0.01
ACGTcount: A:0.29, C:0.19, G:0.26, T:0.26
Consensus pattern (121 bp):
TCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGTCCTG
CTCTTTGAGGACTAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAAGGCA
Found at i:1104587 original size:182 final size:182
Alignment explanation
Indices: 1104259--1104886 Score: 873
Period size: 182 Copynumber: 3.4 Consensus size: 182
1104249 AGAGAGAGCG
* * *
1104259 TCCTGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTT-AAAAG-GAAAAGGCATC
1 TCCTGCTCTTTGAGGACTA-AAGGTGCCACCAACTCGTGTGGGCTTTAAAAAGAAAAAAGGCATC
* * ** *
1104322 CTGCTCTTTGAGGACTGAAAGCTGCCACCAACTTGTGTGGGCTTTGAAAGGAAAAGACGTCTTGC
65 CTGCTCTTTGAGGACTG-AAGCTGCCACCAACTTGTGTGGGCTTTAAAAGGAAGAGGTGTCCTGC
* * * * * * * * **
1104387 TTTTTAAGAACAAAAGGTGCCACCAACTTGTGTAGGCTTTAAAAGGAAGAGGTG
129 TCTTTGAGGACTAAAGGTGCCACCAACTCGTGTGGGCTTTAAAAGAAAAAGGCA
*
1104441 TCCTGCTCTTTGAGGACTAAAGGTGCCACCAACTCGTGTGGGCGTTAAAAAGAAAAAAGGCATCC
1 TCCTGCTCTTTGAGGACTAAAGGTGCCACCAACTCGTGTGGGCTTTAAAAAGAAAAAAGGCATCC
*
1104506 TGCTCTTTGAGGACTGAAGCTGCCACCAACTTGTGTGAGCTTTAAAAGGAAGAGGTGTCCTGCTC
66 TGCTCTTTGAGGACTGAAGCTGCCACCAACTTGTGTGGGCTTTAAAAGGAAGAGGTGTCCTGCTC
*
1104571 TTTGAGGACTAAAGGTGCCACCAACTCGTGTGGGCTTTAAAAAAAAAAGGCA
131 TTTGAGGACTAAAGGTGCCACCAACTCGTGTGGGCTTTAAAAGAAAAAGGCA
* *
1104623 TCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTCGTGTGGGCTTTAAAAAGAAAAAAGGCGTCC
1 TCCTGCTCTTTGAGGACTAAAGGTGCCACCAACTCGTGTGGGCTTTAAAAAGAAAAAAGGCATCC
* * * *
1104688 TGCTCTTTGAGAACTGAAGGTGCCACCAACTTATGTGGGCTTTAAAAGGAAGAGGTGTCCTACTC
66 TGCTCTTTGAGGACTGAAGCTGCCACCAACTTGTGTGGGCTTTAAAAGGAAGAGGTGTCCTGCTC
* *
1104753 TTTGAGGACTAAAGGTTCCACCAACTCATGTGGGCTTTAAAAAGAAAAAGGCA
131 TTTGAGGACTAAAGGTGCCACCAACTCGTGTGGGCTTT-AAAAGAAAAAGGCA
* ** * * * ** *
1104806 TCTTGCTCTTTGAGGACTGGAGGTGCCACCAACTTGTGTGGGTTTTGAAAAGAAAAAAGGTTTCT
1 TCCTGCTCTTTGAGGACTAAAGGTGCCACCAACTCGTGTGGGCTTTAAAAAGAAAAAAGGCATCC
1104871 TGCTCTTTGAGGACTG
66 TGCTCTTTGAGGACTG
1104887 GAAGGGCTAA
Statistics
Matches: 402, Mismatches: 41, Indels: 5
0.90 0.09 0.01
Matches are distributed among these distances:
181 24 0.06
182 266 0.66
183 112 0.28
ACGTcount: A:0.29, C:0.19, G:0.26, T:0.26
Consensus pattern (182 bp):
TCCTGCTCTTTGAGGACTAAAGGTGCCACCAACTCGTGTGGGCTTTAAAAAGAAAAAAGGCATCC
TGCTCTTTGAGGACTGAAGCTGCCACCAACTTGTGTGGGCTTTAAAAGGAAGAGGTGTCCTGCTC
TTTGAGGACTAAAGGTGCCACCAACTCGTGTGGGCTTTAAAAGAAAAAGGCA
Found at i:1111138 original size:79 final size:79
Alignment explanation
Indices: 1111040--1111210 Score: 256
Period size: 79 Copynumber: 2.2 Consensus size: 79
1111030 ACGGGGCTAA
* * *
1111040 GAGTATCCTCGATTGTGAGAAATCAATATTTT-GGAAATAAAGCCGGGGTTGGAGTATCCCCTCG
1 GAGTATCCTCGATTATGAGAAATCAATATTTTAAG-AATAAAGCCGGGGTTAGAGTATCCCCTCG
*
1111104 GAAATAAC-GAGGTTG
65 AAAATAACAGA-GTTG
* *
1111119 GAGTATCCCCGATTATGAGAAATTAATATTTTAAGAATAAAGCCGGGGTTAGAGTATCCCCTCGA
1 GAGTATCCTCGATTATGAGAAATCAATATTTTAAGAATAAAGCCGGGGTTAGAGTATCCCCTCGA
1111184 AAATAACAGAGTTG
66 AAATAACAGAGTTG
1111198 GAGTATCCTCGAT
1 GAGTATCCTCGAT
1111211 GAGTAACGAG
Statistics
Matches: 83, Mismatches: 7, Indels: 4
0.88 0.07 0.04
Matches are distributed among these distances:
79 80 0.96
80 3 0.04
ACGTcount: A:0.33, C:0.16, G:0.25, T:0.27
Consensus pattern (79 bp):
GAGTATCCTCGATTATGAGAAATCAATATTTTAAGAATAAAGCCGGGGTTAGAGTATCCCCTCGA
AAATAACAGAGTTG
Found at i:1111309 original size:53 final size:51
Alignment explanation
Indices: 1111224--1111342 Score: 132
Period size: 51 Copynumber: 2.3 Consensus size: 51
1111214 TAACGAGGTA
* * * *
1111224 GGAGTACCCCCGATTGTGAAAAATTGGGGTTTTTTGGAAATAAAATCGGAGTT
1 GGAGTATCCCCGATTATGAAAAATTGGGG--TTTTGAAAATAAAATCGAAGTT
*
1111277 GGAGTATCCCCGATTAT-AGAAAATTGGTGTTTTGAAAATAAAATCGAAGTT
1 GGAGTATCCCCGATTATGA-AAAATTGGGGTTTTGAAAATAAAATCGAAGTT
* * *
1111328 AGAATATCCCTGATT
1 GGAGTATCCCCGATT
1111343 GTGGAGAATT
Statistics
Matches: 57, Mismatches: 8, Indels: 4
0.83 0.12 0.06
Matches are distributed among these distances:
51 32 0.56
52 1 0.02
53 24 0.42
ACGTcount: A:0.34, C:0.12, G:0.24, T:0.31
Consensus pattern (51 bp):
GGAGTATCCCCGATTATGAAAAATTGGGGTTTTGAAAATAAAATCGAAGTT
Found at i:1113718 original size:21 final size:21
Alignment explanation
Indices: 1113692--1113732 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
1113682 ACAAAGATCG
1113692 ATGTATCGATACACTTCCTTA
1 ATGTATCGATACACTTCCTTA
*
1113713 ATGTATCGATACATTTCCTT
1 ATGTATCGATACACTTCCTT
1113733 GGCAGTAGCT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.27, C:0.22, G:0.10, T:0.41
Consensus pattern (21 bp):
ATGTATCGATACACTTCCTTA
Done.