Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold313
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 790584
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
File 1 of 6
Found at i:1406 original size:79 final size:78
Alignment explanation
Indices: 1277--1934 Score: 481
Period size: 79 Copynumber: 8.4 Consensus size: 78
1267 AAAATATCGA
* * * * * ** *
1277 TTTTCTACCATCGCGGACAGTCCAACCACGTTATTTTTGAGGCAAAACTCCAACCACAATTTTAT
1 TTTTC-ACCATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACC-CAATTTTAT
*
1342 TTCTAAAACACTGAT
64 TTCTAAAACACTAAT
* *
1357 TTTTCACCATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCTGATTTCATT
1 TTTTCACCATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCC-AATTTTATT
* *
1422 TCTAGAACACTGA-
65 TCTAAAACACTAAT
** * * * * * * * **
1435 TTTTGGCCATCAGGGATAC-CCAAGCCCATTATTTCCGAAGGAATACTCTAACCCTGGTTTTATT
1 TTTTCACCATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCC-AATTTTATT
* *
1499 TATAGAACA-TCAAT
65 TCTAAAACACT-AAT
* ** * * * *
1513 TTTTCACTATCAAGGATACTCTAACCTCGCTATTTTCGAGGGGATACTCTAACCCCAATTTTATT
1 TTTTCACCATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAA-CCCAATTTTATT
*
1578 TTTAAAACACTAAT
65 TCTAAAACACTAAT
* * * **
1592 TTTTCACCATCGGGGATACTCTAACCCCGTTA-TTTCTGAGAGTATACTCCAACCTCGGTTTTAT
1 TTTTCACCATCGGGGATACTCCAACCCCGTTATTTTC-GAGGGGATACTCCAACC-CAATTTTAT
*
1656 TCCTAAAACA-TCAAT
64 TTCTAAAACACT-AAT
* ** * * * *
1671 TTTCCACCATCGGGGATACTCCAATGCTGTTA-TTTCCAAGGTATACTCCAACCCCAATTTTA-T
1 TTTTCACCATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAA-CCCAATTTTATT
* **
1734 TCATAAAACATTGCT
65 TC-TAAAACACTAAT
* ** * * * *
1749 TTTCCACCATCAAGGATACTCCAACCCTGTTATTTTCGAGAGGATACTCTAACCTCGATTTTATT
1 TTTTCACCATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACC-CAATTTTATT
**
1814 TCTAAAACACCGAT
65 TCTAAAACACTAAT
* * * * * *
1828 TTTCCACAATCGGGGACACTCCAACTCCATTA-TTTCTGAGGGGATACTCCAACCCTATTTTTAT
1 TTTTCACCATCGGGGATACTCCAACCCCGTTATTTTC-GAGGGGATACTCCAACCC-AATTTTAT
*
1892 TT-TCAAAATA-TCAAT
64 TTCT-AAAACACT-AAT
* * *
1907 TTCTCACCATTGGGGATACTCTAACCCC
1 TTTTCACCATCGGGGATACTCCAACCCC
1935 ATTTTTATCT
Statistics
Matches: 460, Mismatches: 99, Indels: 39
0.77 0.17 0.07
Matches are distributed among these distances:
76 1 0.00
77 48 0.10
78 101 0.22
79 298 0.65
80 12 0.03
ACGTcount: A:0.28, C:0.26, G:0.13, T:0.33
Consensus pattern (78 bp):
TTTTCACCATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCAATTTTATTT
CTAAAACACTAAT
Found at i:1861 original size:157 final size:155
Alignment explanation
Indices: 1335--1892 Score: 529
Period size: 157 Copynumber: 3.6 Consensus size: 155
1325 TCCAACCACA
** * *
1335 ATTTTATTTCTAAAACACTGATTTTTCACCATCGGGGATACTCCAACCCCGTTATTTTCGAGGGG
1 ATTTTATTTCTAAAACACCAATTTTCCACCATCGGGGATACTCCAACTCCGTTATTTTCGAGGGG
** * * ** *
1400 ATACTCCAACCCTGATTTCATTTCTAGAACACTGATTTTGGCCATCAGGGATAC-CCAAGCCCAT
66 ATACTCCAACCCCAATTTTA-TTCTAAAACACTGATTTTCACCATCAGGGATACTCCAA-CCCGT
*
1464 TATTTCCGA-AGGAATACTCTAACC-CTG
129 TATTTTCGAGAGG-ATACTCTAACCTC-G
* * * * * * ** * *
1491 GTTTTATTTATAGAACATCAATTTTTCACTATCAAGGATACTCTAAC-CTCGCTATTTTCGAGGG
1 ATTTTATTTCTAAAACACCAATTTTCCACCATCGGGGATACTCCAACTC-CGTTATTTTCGAGGG
* * * * *
1555 GATACTCTAACCCCAATTTTATTTTTAAAACACTAATTTTTCACCATCGGGGATACTCTAACCCC
65 GATACTCCAACCCCAATTTTA-TTCTAAAACACTGA-TTTTCACCATCAGGGATACTCCAA-CCC
* *
1620 GTTA-TTTCTGAGAGTATACTCCAACCTCG
127 GTTATTTTC-GAGAGGATACTCTAACCTCG
* * * * * *
1649 GTTTTATTCCTAAAACATCAATTTTCCACCATCGGGGATACTCCAA-TGCTGTTA-TTTCCAAGG
1 ATTTTATTTCTAAAACACCAATTTTCCACCATCGGGGATACTCCAACT-CCGTTATTTTCGAGGG
* * * *
1712 TATACTCCAACCCCAATTTTATTCATAAAACATTGCTTTTCCACCATCAAGGATACTCCAACCCT
65 GATACTCCAACCCCAATTTTATTC-TAAAACACTGATTTT-CACCATCAGGGATACTCCAACCC-
1777 GTTATTTTCGAGAGGATACTCTAACCTCG
127 GTTATTTTCGAGAGGATACTCTAACCTCG
* * * *
1806 ATTTTATTTCTAAAACACCGATTTTCCACAATCGGGGACACTCCAACTCCATTA-TTTCTGAGGG
1 ATTTTATTTCTAAAACACCAATTTTCCACCATCGGGGATACTCCAACTCCGTTATTTTC-GAGGG
* *
1870 GATACTCCAACCCTATTTTTATT
65 GATACTCCAACCCCAATTTTATT
1893 TTCAAAATAT
Statistics
Matches: 325, Mismatches: 63, Indels: 26
0.79 0.15 0.06
Matches are distributed among these distances:
155 1 0.00
156 89 0.27
157 140 0.43
158 91 0.28
159 4 0.01
ACGTcount: A:0.28, C:0.25, G:0.13, T:0.34
Consensus pattern (155 bp):
ATTTTATTTCTAAAACACCAATTTTCCACCATCGGGGATACTCCAACTCCGTTATTTTCGAGGGG
ATACTCCAACCCCAATTTTATTCTAAAACACTGATTTTCACCATCAGGGATACTCCAACCCGTTA
TTTTCGAGAGGATACTCTAACCTCG
Found at i:1892 original size:236 final size:236
Alignment explanation
Indices: 1323--1937 Score: 665
Period size: 236 Copynumber: 2.6 Consensus size: 236
1313 TTGAGGCAAA
* *
1323 ACTCCAACCACAATTTTATTTCTAAAACACTGATTTTTCACCATCGGGGATACTCCAACCCCGTT
1 ACTCTAACCCCAATTTTATTTCTAAAACACTGATTTTTCACCATCGGGGATACTCCAACCCCGTT
* * * * ** *
1388 ATTT-TCGAGGGGATACTCCAACCCTGATTTCATTTCTAGAACA-CTGATTTT-GGCCATCAGGG
66 ATTTCT-GAGGGGATACTCCAACCCTCATTTTA-TTCTAAAACATC-AATTTTCCACCATCGGGG
* *** * *
1450 ATAC-CCAAGCCCATTATTTCCGAAGGAATACTCTAACCCTGGTTTTATTTATAGAACATCAATT
128 ATACTCCAAGCCCATTATTTCCGAAGGAATACTCCAACCCCAATTTTATTCATAAAACATCAATT
* * * *
1514 TTTCACTATCAAGGATACTCTAACCTCGCTATTTTCGAGGGGAT
193 TTCCACCATCAAGGATACTCCAACCTCGCTATTTTCGAGAGGAT
* * *
1558 ACTCTAACCCCAATTTTATTTTTAAAACACTAATTTTTCACCATCGGGGATACTCTAACCCCGTT
1 ACTCTAACCCCAATTTTATTTCTAAAACACTGATTTTTCACCATCGGGGATACTCCAACCCCGTT
* * *
1623 ATTTCTGAGAGTATACTCCAA-CCTCGGTTTTATTCCTAAAACATCAATTTTCCACCATCGGGGA
66 ATTTCTGAGGGGATACTCCAACCCTC-ATTTTATT-CTAAAACATCAATTTTCCACCATCGGGGA
** * ***
1687 TACTCCAATG-CTGTTATTTCC-AAGGTATACTCCAACCCCAATTTTATTCATAAAACATTGCTT
129 TACTCCAA-GCCCATTATTTCCGAAGGAATACTCCAACCCCAATTTTATTCATAAAACATCAATT
*
1750 TTCCACCATCAAGGATACTCCAACC-CTGTTATTTTCGAGAGGAT
193 TTCCACCATCAAGGATACTCCAACCTC-GCTATTTTCGAGAGGAT
* * * * * * * *
1794 ACTCTAACCTCGATTTTATTTCTAAAACACCGATTTTCCACAATCGGGGACACTCCAACTCCATT
1 ACTCTAACCCCAATTTTATTTCTAAAACACTGATTTTTCACCATCGGGGATACTCCAACCCCGTT
* * *
1859 ATTTCTGAGGGGATACTCCAACCCT-ATTTTTATTTTCAAAATATCAA-TTTCTCACCATTGGGG
66 ATTTCTGAGGGGATACTCCAACCCTCA-TTTTATTCT-AAAACATCAATTTTC-CACCATCGGGG
* *
1922 ATACTCTAACCCCATT
128 ATACTCCAAGCCCATT
1938 TTTATCTCCA
Statistics
Matches: 314, Mismatches: 53, Indels: 25
0.80 0.14 0.06
Matches are distributed among these distances:
234 5 0.02
235 99 0.32
236 193 0.61
237 16 0.05
238 1 0.00
ACGTcount: A:0.28, C:0.26, G:0.12, T:0.33
Consensus pattern (236 bp):
ACTCTAACCCCAATTTTATTTCTAAAACACTGATTTTTCACCATCGGGGATACTCCAACCCCGTT
ATTTCTGAGGGGATACTCCAACCCTCATTTTATTCTAAAACATCAATTTTCCACCATCGGGGATA
CTCCAAGCCCATTATTTCCGAAGGAATACTCCAACCCCAATTTTATTCATAAAACATCAATTTTC
CACCATCAAGGATACTCCAACCTCGCTATTTTCGAGAGGAT
Found at i:3948 original size:44 final size:44
Alignment explanation
Indices: 3898--4040 Score: 155
Period size: 44 Copynumber: 3.2 Consensus size: 44
3888 GTTGGATTAG
* *
3898 ACCCTAGTCAAACTTTTATCATTTTAGTTT-AATGTATGGTTACC
1 ACCCTAGTCAAACTTTTCTCATTTTAATTTGAA-GTATGGTTACC
* * * * *
3942 ACCCTAGTTAGATTTTTCTTATTCTAATTTGAAGTATGGTTACC
1 ACCCTAGTCAAACTTTTCTCATTTTAATTTGAAGTATGGTTACC
* *
3986 ACCCTAGTCAAACTTTTCTCATTTCAATTCGGACA-TATGGTTACC
1 ACCCTAGTCAAACTTTTCTCATTTTAATT-TGA-AGTATGGTTACC
*
4031 ACCCTGGTCA
1 ACCCTAGTCA
4041 GATTCTTTTT
Statistics
Matches: 81, Mismatches: 15, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
44 57 0.70
45 23 0.28
46 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.13, T:0.40
Consensus pattern (44 bp):
ACCCTAGTCAAACTTTTCTCATTTTAATTTGAAGTATGGTTACC
Found at i:4301 original size:79 final size:79
Alignment explanation
Indices: 4192--4831 Score: 510
Period size: 79 Copynumber: 8.1 Consensus size: 79
4182 AAAGAGAAAG
* * * *
4192 TCCAACCACGTTATTTTTGAGGCGAAACTCCAACCAC-AATTTTATTTCTAAAACACTGATTTTT
1 TCCAACCCCGTTATTTTCGAGGGGATACTCCAACC-CTAATTTTATTTCTAAAACACTGATTTTT
4256 CACCATCGGGGATAC
65 CACCATCGGGGATAC
* * * *
4271 TCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCTGATTTCATTTCTAGAACACTGA-TTTTG
1 TCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCTAATTTTATTTCTAAAACACTGATTTTTC
* *
4335 GCCATCAGGGATAC
66 ACCATCGGGGATAC
* * * * * * * ** * * *
4349 CCCAAGCCCATTATTTCCGAAGGAATACTCTAACCCTGGTTTTATTTATAGAACA-TCAATTTTT
1 TCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCTAATTTTATTTCTAAAACACT-GATTTTT
* **
4413 CACTATCAAGGATAC
65 CACCATCGGGGATAC
* * * * * *
4428 TCTAACCTCGCTATTTTCGAGGGGATACTCTAACCCCAATTTTATTTTTAAAACACTGATTTTTC
1 TCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCTAATTTTATTTCTAAAACACTGATTTTTC
4493 ACCATCGGGGATAC
66 ACCATCGGGGATAC
* * * *** * *
4507 TCTAACCCCGTTA-TTTCTGAGAGTATACTCCAACCTCGGTTTTTATTCCTAAAACA-TCAATTT
1 TCCAACCCCGTTATTTTC-GAGGGGATACTCCAACC-CTAATTTTATTTCTAAAACACT-GATTT
*
4570 TCCACCATCGGGGATAC
63 TTCACCATCGGGGATAC
** * * * * * * *
4587 TCCAATGCTGTTA-TTTCCAAGGTATACTCCAACCCCAATTTTA-TTCATAAAACATTGATTTTC
1 TCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCTAATTTTATTTC-TAAAACACTGATTTTT
**
4650 CACCATCAAGGATAC
65 CACCATCGGGGATAC
* * * * * *
4665 TCCAACCCTGTTATTTTCGAGAGGATACTCTAA-CCTCGATTTTATTTCTAAAACACCGATTTTC
1 TCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCT-AATTTTATTTCTAAAACACTGATTTTT
* *
4729 CACAATCGGGGACAC
65 CACCATCGGGGATAC
* * * * *
4744 TCCAACTCCATTA-TTTCTGAGGGGATACTCCAACCCTATTTTTATTT-TCAAAATA-TCAATTT
1 TCCAACCCCGTTATTTTC-GAGGGGATACTCCAACCCTAATTTTATTTCT-AAAACACT-GATTT
* *
4806 CTCACCATTGGGGATAC
63 TTCACCATCGGGGATAC
*
4823 TCTAACCCC
1 TCCAACCCC
4832 ATTTTTATCT
Statistics
Matches: 444, Mismatches: 101, Indels: 32
0.77 0.18 0.06
Matches are distributed among these distances:
77 3 0.01
78 117 0.26
79 269 0.61
80 55 0.12
ACGTcount: A:0.28, C:0.26, G:0.13, T:0.33
Consensus pattern (79 bp):
TCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCTAATTTTATTTCTAAAACACTGATTTTTC
ACCATCGGGGATAC
Found at i:4772 original size:316 final size:316
Alignment explanation
Indices: 4231--4831 Score: 691
Period size: 316 Copynumber: 1.9 Consensus size: 316
4221 CCAACCACAA
* * * * *
4231 TTTTATTTCTAAAACACTGATTTTTCACCATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGA
1 TTTTATTCCTAAAACACTAATTTTCCACCATCGGGGATACTCCAACCCCGTTATTTTCCAAGGGA
** * ** *
4296 TACTCCAACCCTGATTTCATTTCTAGAACACTGATTTTGGCCATCAGGGATACCCCAAGCCCATT
66 TACTCCAACCCCAATTTCATTTCTAAAACACTGATTTTCACCATCAAGGATACCCCAAGCCCATT
* * * * * *
4361 ATTTCCGAAGGAATACTCTAACCCTGGTTTTATTTATAGAACATCAATTTTTCACTATCAAGGAT
131 ATTTCCGAAGGAATACTCTAACCCTGATTTTATTTATAAAACACCAATTTTCCACAATCAAGGAC
* * * *
4426 ACTCTAACCTCGCTATTTTCGAGGGGATACTCTAACCCCAATTTTATTTTTAAAACA-CTGATTT
196 ACTCCAACCTCGCTATTTTCGAGGGGATACTCCAACCCCAATTTTATTTTCAAAACATC-AATTT
*
4490 TTCACCATCGGGGATACTCTAACCCCGTTATTTCTGAGAGTATACTCCAACCTCGGT
260 CTCACCATCGGGGATACTCTAACCCCGTTATTTCTGAGAGTATACTCCAACCTCGGT
** * *
4547 TTTTATTCCTAAAACA-TCAATTTTCCACCATCGGGGATACTCCAATGCTGTTA-TTTCCAAGGT
1 TTTTATTCCTAAAACACT-AATTTTCCACCATCGGGGATACTCCAACCCCGTTATTTTCCAAGGG
* * *
4610 ATACTCCAACCCCAATTTTA-TTCATAAAACATTGATTTTCCACCATCAAGGATACTCCAA-CCC
65 ATACTCCAACCCCAATTTCATTTC-TAAAACACTGATTTT-CACCATCAAGGATACCCCAAGCCC
* * * *
4673 TGTTATTTTCGAGAGG-ATACTCTAA-CCTCGATTTTATTTCTAAAACACCGATTTTCCACAATC
128 -ATTATTTCCGA-AGGAATACTCTAACCCT-GATTTTATTTATAAAACACCAATTTTCCACAATC
** * * *
4736 GGGGACACTCCAA-CTC-C-ATTATTTCTGAGGGGATACTCCAACCCTATTTTTATTTTCAAAAT
190 AAGGACACTCCAACCTCGCTA-T-TTTC-GAGGGGATACTCCAACCCCAATTTTATTTTCAAAAC
*
4798 ATCAATTTCTCACCATTGGGGATACTCTAACCCC
252 ATCAATTTCTCACCATCGGGGATACTCTAACCCC
4832 ATTTTTATCT
Statistics
Matches: 236, Mismatches: 39, Indels: 20
0.80 0.13 0.07
Matches are distributed among these distances:
313 1 0.00
314 5 0.02
315 51 0.22
316 175 0.74
317 4 0.02
ACGTcount: A:0.28, C:0.26, G:0.13, T:0.34
Consensus pattern (316 bp):
TTTTATTCCTAAAACACTAATTTTCCACCATCGGGGATACTCCAACCCCGTTATTTTCCAAGGGA
TACTCCAACCCCAATTTCATTTCTAAAACACTGATTTTCACCATCAAGGATACCCCAAGCCCATT
ATTTCCGAAGGAATACTCTAACCCTGATTTTATTTATAAAACACCAATTTTCCACAATCAAGGAC
ACTCCAACCTCGCTATTTTCGAGGGGATACTCCAACCCCAATTTTATTTTCAAAACATCAATTTC
TCACCATCGGGGATACTCTAACCCCGTTATTTCTGAGAGTATACTCCAACCTCGGT
Found at i:6845 original size:44 final size:44
Alignment explanation
Indices: 6795--6937 Score: 139
Period size: 44 Copynumber: 3.2 Consensus size: 44
6785 GTTGGATTAG
*
6795 ACCCTAGTCAAACTTTTATCATTTT-AGTTT-AATGTATGGTTACC
1 ACCCTAGTCAAACTTTTCTCATTTTGA-TTTGAA-GTATGGTTACC
* * * * *
6839 ACCCTAGTTAGATTTTTCTTATTCTGATTTGAAGTATGGTTACC
1 ACCCTAGTCAAACTTTTCTCATTTTGATTTGAAGTATGGTTACC
** *
6883 ACCCTAGTCAAACTTTTCTCATTTCAATTCGGACA-TATGGTTACC
1 ACCCTAGTCAAACTTTTCTCATTTTGATT-TGA-AGTATGGTTACC
*
6928 ACCCTGGTCA
1 ACCCTAGTCA
6938 GATTCTTTTT
Statistics
Matches: 80, Mismatches: 15, Indels: 7
0.78 0.15 0.07
Matches are distributed among these distances:
44 55 0.69
45 24 0.30
46 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.13, T:0.40
Consensus pattern (44 bp):
ACCCTAGTCAAACTTTTCTCATTTTGATTTGAAGTATGGTTACC
Found at i:7451 original size:34 final size:35
Alignment explanation
Indices: 7382--7454 Score: 87
Period size: 34 Copynumber: 2.1 Consensus size: 35
7372 GGTGTTTGTG
*
7382 GAAAGAATAAGCACAAAGGAATACAAATGAGCTTT
1 GAAAGAATAAGCACAAAGGAATACAAAAGAGCTTT
* **
7417 GAAAGAATAA-CAACAAA-GAGTACAAAAGCTCTTT
1 GAAAGAATAAGC-ACAAAGGAATACAAAAGAGCTTT
7451 GAAA
1 GAAA
7455 TGAAGAAAAT
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
34 18 0.55
35 15 0.45
ACGTcount: A:0.53, C:0.12, G:0.18, T:0.16
Consensus pattern (35 bp):
GAAAGAATAAGCACAAAGGAATACAAAAGAGCTTT
Found at i:7796 original size:19 final size:19
Alignment explanation
Indices: 7768--7817 Score: 57
Period size: 20 Copynumber: 2.6 Consensus size: 19
7758 CTTTTCAAGG
*
7768 TGTATTGATACTATA-AACA
1 TGTATCGATACTA-ACAACA
*
7787 TGTATCGATACTAAGCAATA
1 TGTATCGATACTAA-CAACA
7807 TGTATCGATAC
1 TGTATCGATAC
7818 ATCTGGGTGT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
18 1 0.04
19 12 0.44
20 14 0.52
ACGTcount: A:0.38, C:0.14, G:0.14, T:0.34
Consensus pattern (19 bp):
TGTATCGATACTAACAACA
Found at i:8257 original size:88 final size:87
Alignment explanation
Indices: 8108--8356 Score: 286
Period size: 88 Copynumber: 2.8 Consensus size: 87
8098 GATCCTAACA
* *
8108 GTATGGTTACCACCCTAGTCAAATGCCTTTCCTTTCTATTTGATGTATGGTTACCACCCTAGTCA
1 GTATGGTTACCACCCTGGTCAAAT-CCTTTTCTTTCTATTTGATGTATGGTTACCACCCTAGTCA
* * * * *
8173 TA-TGCTTCTCCTTTTGATTTGAT
65 AACT-CTTCTCATTTCGATCTGAC
* * *
8196 GTATGGTTACCACCCTGGTCATATCCATTTTCTTTCTATTTAACGTATGGTTACCACCCTAGTCA
1 GTATGGTTACCACCCTGGTCAAATCC-TTTTCTTTCTATTTGATGTATGGTTACCACCCTAGTCA
* *
8261 AACTTTTCTCATTTCGGTCTGAC
65 AACTCTTCTCATTTCGATCTGAC
* * * *
8284 ATATGGTTACCACCCTGGTCAGATGCTTCTT-ATTCTGATTTGATGTATGGTTACCACCCTAGTC
1 GTATGGTTACCACCCTGGTCAAATCCTT-TTCTTTCT-ATTTGATGTATGGTTACCACCCTAGTC
8348 AAATCTCTT
64 AAA-CTCTT
8357 TTCTTCCTGT
Statistics
Matches: 137, Mismatches: 19, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
87 8 0.06
88 124 0.91
89 5 0.04
ACGTcount: A:0.20, C:0.24, G:0.15, T:0.40
Consensus pattern (87 bp):
GTATGGTTACCACCCTGGTCAAATCCTTTTCTTTCTATTTGATGTATGGTTACCACCCTAGTCAA
ACTCTTCTCATTTCGATCTGAC
Found at i:8359 original size:132 final size:131
Alignment explanation
Indices: 8103--8380 Score: 344
Period size: 132 Copynumber: 2.1 Consensus size: 131
8093 ACCAAGATCC
* * **
8103 TAACAGTATGGTTACCACCCTAGTCAAATGCCTTTCCTTTCTATTTGATGTATGGTTACCACCCT
1 TAAC-GTATGGTTACCACCCTAGTCAAA-GCCTTTCCTTTCGATCTGACATATGGTTACCACCCT
* * * * * *
8168 AGTCATATGCTTCTCCTTTTGATTTGATGTATGGTTACCACCCTGGTCATATCCATTTTCTTTCT
64 AGTCAGATGCTTCTCATTCTGATTTGATGTATGGTTACCACCCTAGTCAAATCCATTTTCTTCCT
8233 ATT
129 ATT
* *
8236 TAACGTATGGTTACCACCCTAGTCAAA-CTTTTCTCATTTCGGTCTGACATATGGTTACCACCCT
1 TAACGTATGGTTACCACCCTAGTCAAAGCCTTTC-C-TTTCGATCTGACATATGGTTACCACCCT
* *
8300 GGTCAGATGCTTCTTATTCTGATTTGATGTATGGTTACCACCCTAGTCAAATCTC-TTTTCTTCC
64 AGTCAGATGCTTCTCATTCTGATTTGATGTATGGTTACCACCCTAGTCAAATC-CATTTTCTTCC
*
8364 TGTT
128 TATT
* *
8368 TGACATATGGTTA
1 TAACGTATGGTTA
8381 TTGTAGACAC
Statistics
Matches: 125, Mismatches: 17, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
130 5 0.04
131 1 0.01
132 114 0.91
133 5 0.04
ACGTcount: A:0.21, C:0.24, G:0.15, T:0.41
Consensus pattern (131 bp):
TAACGTATGGTTACCACCCTAGTCAAAGCCTTTCCTTTCGATCTGACATATGGTTACCACCCTAG
TCAGATGCTTCTCATTCTGATTTGATGTATGGTTACCACCCTAGTCAAATCCATTTTCTTCCTAT
T
Found at i:8370 original size:44 final size:44
Alignment explanation
Indices: 8108--8380 Score: 250
Period size: 44 Copynumber: 6.2 Consensus size: 44
8098 GATCCTAACA
* * * *
8108 GTATGGTTACCACCCTAGTCAAATGCCTTTCCTTTCTATTTGAT
1 GTATGGTTACCACCCTAGTCAAATGCTTTTTCTTTCTGTTTGAC
* * * *
8152 GTATGGTTACCACCCTAGTCATATGCTTCTCCTTT-TGATTTGAT
1 GTATGGTTACCACCCTAGTCAAATGCTTTTTCTTTCTG-TTTGAC
* * * * * *
8196 GTATGGTTACCACCCTGGTCATATCCATTTTCTTTCTATTTAAC
1 GTATGGTTACCACCCTAGTCAAATGCTTTTTCTTTCTGTTTGAC
* *
8240 GTATGGTTACCACCCTAGTCAAA--CTTTTCTCATTTCGGTCTGAC
1 GTATGGTTACCACCCTAGTCAAATGCTTTT-TC-TTTCTGTTTGAC
* * * * * *
8284 ATATGGTTACCACCCTGGTCAGATGCTTCTT-ATTCTGATTTGAT
1 GTATGGTTACCACCCTAGTCAAATGCTTTTTCTTTCTG-TTTGAC
*
8328 GTATGGTTACCACCCTAGTCAAAT-CTCTTTTCTTCCTGTTTGAC
1 GTATGGTTACCACCCTAGTCAAATGCT-TTTTCTTTCTGTTTGAC
*
8372 ATATGGTTA
1 GTATGGTTA
8381 TTGTAGACAC
Statistics
Matches: 185, Mismatches: 35, Indels: 18
0.78 0.15 0.08
Matches are distributed among these distances:
42 4 0.02
43 9 0.05
44 162 0.88
45 6 0.03
46 4 0.02
ACGTcount: A:0.20, C:0.24, G:0.15, T:0.41
Consensus pattern (44 bp):
GTATGGTTACCACCCTAGTCAAATGCTTTTTCTTTCTGTTTGAC
Found at i:8664 original size:20 final size:21
Alignment explanation
Indices: 8624--8670 Score: 60
Period size: 20 Copynumber: 2.3 Consensus size: 21
8614 TTCTATGATT
*
8624 TGTATCGATACAATTAGTGAA
1 TGTATCGATACAATAAGTGAA
*
8645 TGTATTGATAC-ATAAGTGAA
1 TGTATCGATACAATAAGTGAA
*
8665 AGTATC
1 TGTATC
8671 AAAACATGTA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
20 12 0.55
21 10 0.45
ACGTcount: A:0.38, C:0.09, G:0.19, T:0.34
Consensus pattern (21 bp):
TGTATCGATACAATAAGTGAA
Found at i:8750 original size:20 final size:20
Alignment explanation
Indices: 8721--8772 Score: 59
Period size: 20 Copynumber: 2.6 Consensus size: 20
8711 GTTAAAAAAT
* **
8721 TGTATGGATACATAAGTAAA
1 TGTATCGATACATAACCAAA
**
8741 TGTATCGATACATTTCCAAA
1 TGTATCGATACATAACCAAA
8761 TGTATCGATACA
1 TGTATCGATACA
8773 ATTTACTTTG
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.38, C:0.13, G:0.15, T:0.33
Consensus pattern (20 bp):
TGTATCGATACATAACCAAA
Found at i:9787 original size:20 final size:21
Alignment explanation
Indices: 9748--9787 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
9738 CAGCCCTTGA
* *
9748 TCATGCATTTTTTGCTATGTT
1 TCATGCACTTTTAGCTATGTT
9769 TCATGCACTTTTAGC-ATGT
1 TCATGCACTTTTAGCTATGT
9788 CCAGCATCCC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.17, C:0.17, G:0.15, T:0.50
Consensus pattern (21 bp):
TCATGCACTTTTAGCTATGTT
Found at i:11558 original size:33 final size:33
Alignment explanation
Indices: 11520--11585 Score: 87
Period size: 33 Copynumber: 2.0 Consensus size: 33
11510 TATAGTACCC
* *
11520 ATGTATCGACACAAAGAACTCAATATCGATACA
1 ATGTATCAACACAAAGAACGCAATATCGATACA
* * *
11553 ATGTATCAATACTAAGAACGCAGTATCGATACA
1 ATGTATCAACACAAAGAACGCAATATCGATACA
11586 TCTGGGCTTC
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 28 1.00
ACGTcount: A:0.44, C:0.20, G:0.14, T:0.23
Consensus pattern (33 bp):
ATGTATCAACACAAAGAACGCAATATCGATACA
Found at i:18226 original size:44 final size:44
Alignment explanation
Indices: 18140--18454 Score: 256
Period size: 44 Copynumber: 7.2 Consensus size: 44
18130 GATCCTAACA
* * *
18140 GTATGGTTACCACCCTGGTCAAATCCCTTTCCT-TTCTG-TTTGAT
1 GTATGGTTACCACCTTGGTCAAAT-CC-TTCTTATTCTGATTTGAC
* *
18184 GTATGGTTACTACCTTGGT-AAGATGCTTCTTATTCTGATTTGAC
1 GTATGGTTACCACCTTGGTCAA-ATCCTTCTTATTCTGATTTGAC
*
18228 GTATGGTTACCACC-TGGTCAAATCCCTTTCCT-TTCT-ATTTGAC
1 GTATGGTTACCACCTTGGTCAAAT-CC-TTCTTATTCTGATTTGAC
* * * * *
18271 GTATGGTTGCCACCTTGGTCAAA-CTTTTCTCATTTTGATCTGAC
1 GTATGGTTACCACCTTGGTCAAATC-CTTCTTATTCTGATTTGAC
* * * * * * **
18315 ATATGGTTACCACCTTGGTTAGATGCTTCTCAATCTGATTTGGT
1 GTATGGTTACCACCTTGGTCAAATCCTTCTTATTCTGATTTGAC
* *
18359 GTATGGTTACCACCCTGGTCAAATCCCTCTCTT-TTTTG-TTTGAC
1 GTATGGTTACCACCTTGGTCAAAT-CCT-TCTTATTCTGATTTGAC
* *
18403 GTATGGTTACCACCTTGCTCAAATCTCTT-TTCTTCCTG-TTTGAC
1 GTATGGTTACCACCTTGGTCAAATC-CTTCTTATT-CTGATTTGAC
18447 GTATGGTT
1 GTATGGTT
18455 CTTATAGACA
Statistics
Matches: 217, Mismatches: 38, Indels: 32
0.76 0.13 0.11
Matches are distributed among these distances:
42 10 0.05
43 41 0.19
44 154 0.71
45 9 0.04
46 3 0.01
ACGTcount: A:0.18, C:0.23, G:0.17, T:0.42
Consensus pattern (44 bp):
GTATGGTTACCACCTTGGTCAAATCCTTCTTATTCTGATTTGAC
Found at i:18451 original size:88 final size:87
Alignment explanation
Indices: 18140--18454 Score: 309
Period size: 88 Copynumber: 3.6 Consensus size: 87
18130 GATCCTAACA
* * *
18140 GTATGGTTACCACCCTGGTCAAATCCCTTTCCTTTCTGTTTGATGTATGGTTACTACCTTGGT-A
1 GTATGGTTACCACCTTGGTCAAATCCCTTTCCTTTCTGTTTGACGTATGGTTACCACCTTGGTCA
* *
18204 AGATGCTTCTTATTCTGATTTGAC
66 A-ATCCTTCTT-TTTTGATTTGAC
* *
18228 GTATGGTTACCACC-TGGTCAAATCCCTTTCCTTTCTATTTGACGTATGGTTGCCACCTTGGTCA
1 GTATGGTTACCACCTTGGTCAAATCCCTTTCCTTTCTGTTTGACGTATGGTTACCACCTTGGTCA
* * *
18292 AA-CTTTTCTCATTTTGATCTGAC
66 AATC-CTTCT-TTTTTGATTTGAC
* * * * ** ** *
18315 ATATGGTTACCACCTTGGTTAGAT-GC-TTCTCAATCTGATTTGGTGTATGGTTACCACCCTGGT
1 GTATGGTTACCACCTTGGTCAAATCCCTTTC-CTTTCTG-TTTGACGTATGGTTACCACCTTGGT
18378 CAAATCCCTCTCTTTTTTG-TTTGAC
64 CAAAT-CCT-TCTTTTTTGATTTGAC
* * * *
18403 GTATGGTTACCACCTTGCTCAAATCTCTTTTCTTCCTGTTTGACGTATGGTT
1 GTATGGTTACCACCTTGGTCAAATCCCTTTCCTTTCTGTTTGACGTATGGTT
18455 CTTATAGACA
Statistics
Matches: 182, Mismatches: 34, Indels: 22
0.76 0.14 0.09
Matches are distributed among these distances:
86 3 0.02
87 77 0.42
88 85 0.47
89 11 0.06
90 6 0.03
ACGTcount: A:0.18, C:0.23, G:0.17, T:0.42
Consensus pattern (87 bp):
GTATGGTTACCACCTTGGTCAAATCCCTTTCCTTTCTGTTTGACGTATGGTTACCACCTTGGTCA
AATCCTTCTTTTTTGATTTGAC
Found at i:18739 original size:20 final size:21
Alignment explanation
Indices: 18700--18747 Score: 62
Period size: 20 Copynumber: 2.3 Consensus size: 21
18690 TTTATGATTG
* *
18700 GTATCGATACAATTAGTGAAT
1 GTATCGATACAATAAGTGAAA
*
18721 GTATTGATAC-ATAAGTGAAA
1 GTATCGATACAATAAGTGAAA
18741 GTATCGA
1 GTATCGA
18748 AACATGTCTC
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
20 14 0.61
21 9 0.39
ACGTcount: A:0.40, C:0.08, G:0.21, T:0.31
Consensus pattern (21 bp):
GTATCGATACAATAAGTGAAA
Found at i:18830 original size:20 final size:20
Alignment explanation
Indices: 18801--18852 Score: 68
Period size: 20 Copynumber: 2.6 Consensus size: 20
18791 GTCAAAAAAT
*
18801 TGTATTGATACATAAGTAAA
1 TGTATTGATACATAAGGAAA
* **
18821 TGTATCGATACATTTGGAAA
1 TGTATTGATACATAAGGAAA
18841 TGTATTGATACA
1 TGTATTGATACA
18853 ATTTTCTTTG
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.38, C:0.08, G:0.17, T:0.37
Consensus pattern (20 bp):
TGTATTGATACATAAGGAAA
Found at i:21751 original size:44 final size:44
Alignment explanation
Indices: 21632--21772 Score: 153
Period size: 44 Copynumber: 3.2 Consensus size: 44
21622 CAATAATTAT
* * *
21632 CACCTTGGTTAAACTTTTCTTAGTTTAGTCTGACGTATGGTTAC
1 CACCTTGGTTAAACTTTTCTTAGTTCAATTTGACGTATGGTTAC
* * * * *
21676 CACCCTAGTCAAATCCCTTTTC-T--TTCTATTTGATGTATGGTTAC
1 CACCTTGGTTAAA---CTTTTCTTAGTTCAATTTGACGTATGGTTAC
*
21720 CACCTTGGTTAAACTTTTCTTAGTTCAATTTGACATATGGTTAC
1 CACCTTGGTTAAACTTTTCTTAGTTCAATTTGACGTATGGTTAC
21764 CACCTTGGT
1 CACCTTGGT
21773 CAGATTCTTC
Statistics
Matches: 77, Mismatches: 14, Indels: 12
0.75 0.14 0.12
Matches are distributed among these distances:
41 6 0.08
42 1 0.01
44 63 0.82
46 1 0.01
47 6 0.08
ACGTcount: A:0.21, C:0.21, G:0.15, T:0.43
Consensus pattern (44 bp):
CACCTTGGTTAAACTTTTCTTAGTTCAATTTGACGTATGGTTAC
Found at i:22674 original size:13 final size:13
Alignment explanation
Indices: 22633--22681 Score: 54
Period size: 13 Copynumber: 4.2 Consensus size: 13
22623 CCGTGACAAG
22633 CAATGTATCGATA
1 CAATGTATCGATA
*
22646 AAAT-T-TC-AT-
1 CAATGTATCGATA
22655 C-ATGTATCGATA
1 CAATGTATCGATA
22667 CAATGTATCGATA
1 CAATGTATCGATA
22680 CA
1 CA
22682 TTGTCCCATG
Statistics
Matches: 29, Mismatches: 2, Indels: 10
0.71 0.05 0.24
Matches are distributed among these distances:
8 2 0.07
9 1 0.03
10 4 0.14
11 4 0.14
12 2 0.07
13 16 0.55
ACGTcount: A:0.39, C:0.16, G:0.12, T:0.33
Consensus pattern (13 bp):
CAATGTATCGATA
Found at i:22700 original size:33 final size:34
Alignment explanation
Indices: 22633--22702 Score: 90
Period size: 33 Copynumber: 2.1 Consensus size: 34
22623 CCGTGACAAG
*
22633 CAATGTATCGATAAAATTTCATCATGTATCGATA
1 CAATGTATCGATAAAATTTCACCATGTATCGATA
* *
22667 CAATGTATCGAT-ACATTGTC-CCATGTATTGATA
1 CAATGTATCGATAAAATT-TCACCATGTATCGATA
22700 CAA
1 CAA
22703 ATAGTGATAG
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
33 18 0.56
34 14 0.44
ACGTcount: A:0.36, C:0.17, G:0.13, T:0.34
Consensus pattern (34 bp):
CAATGTATCGATAAAATTTCACCATGTATCGATA
Found at i:22757 original size:20 final size:19
Alignment explanation
Indices: 22731--22803 Score: 85
Period size: 20 Copynumber: 3.7 Consensus size: 19
22721 CTGTCAGTTT
*
22731 CATGTATCGATACAATTG-T
1 CATGTATCGATACAA-TGAG
22750 CTATGTATCGATACAATGAG
1 C-ATGTATCGATACAATGAG
*
22770 CATGTATCGATACAAAGCAG
1 CATGTATCGATACAATG-AG
*
22790 TATGTATCGATACA
1 CATGTATCGATACA
22804 TCTGGAAGTG
Statistics
Matches: 48, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
19 18 0.38
20 30 0.62
ACGTcount: A:0.36, C:0.16, G:0.18, T:0.30
Consensus pattern (19 bp):
CATGTATCGATACAATGAG
Found at i:23292 original size:18 final size:18
Alignment explanation
Indices: 23255--23288 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
23245 CCCCCTTAAA
*
23255 TAAAAAAATCTCTCCTCT
1 TAAAAAAATCTCTCCCCT
23273 TAAAAAAAT-TCTCCCC
1 TAAAAAAATCTCTCCCC
23289 CTTACTCAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.41, C:0.29, G:0.00, T:0.29
Consensus pattern (18 bp):
TAAAAAAATCTCTCCCCT
Found at i:25198 original size:13 final size:13
Alignment explanation
Indices: 25180--25218 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
25170 AAATAGTACC
25180 CAATGTATCGATA
1 CAATGTATCGATA
*
25193 CAATGTATCAATA
1 CAATGTATCGATA
25206 CAATGTATCGATA
1 CAATGTATCGATA
25219 AAAGGAATGT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.41, C:0.15, G:0.13, T:0.31
Consensus pattern (13 bp):
CAATGTATCGATA
Found at i:31391 original size:21 final size:21
Alignment explanation
Indices: 31365--31419 Score: 78
Period size: 20 Copynumber: 2.7 Consensus size: 21
31355 GTTAGAAGCA
*
31365 ATGTATCGATACAATT-TCATC
1 ATGTATCGATACAATTGTC-CC
31386 ATGTATCGATAC-ATTGTCCC
1 ATGTATCGATACAATTGTCCC
31406 ATGTATCGATACAA
1 ATGTATCGATACAA
31420 ATAGTGATAG
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
20 16 0.52
21 15 0.48
ACGTcount: A:0.33, C:0.20, G:0.13, T:0.35
Consensus pattern (21 bp):
ATGTATCGATACAATTGTCCC
Found at i:31516 original size:20 final size:20
Alignment explanation
Indices: 31449--31520 Score: 85
Period size: 20 Copynumber: 3.6 Consensus size: 20
31439 TTCCAGTTTC
*
31449 ATGTATCGATACAATTGT-CT
1 ATGTATCGATACAA-TGTAGT
*
31469 ATGTATCGATACAATG-AGC
1 ATGTATCGATACAATGTAGT
* *
31488 ATATATCGATACAAAGTAGT
1 ATGTATCGATACAATGTAGT
31508 ATGTATCGATACA
1 ATGTATCGATACA
31521 TCTGGAAGTG
Statistics
Matches: 44, Mismatches: 6, Indels: 4
0.81 0.11 0.07
Matches are distributed among these distances:
19 16 0.36
20 28 0.64
ACGTcount: A:0.38, C:0.14, G:0.17, T:0.32
Consensus pattern (20 bp):
ATGTATCGATACAATGTAGT
Found at i:32938 original size:24 final size:24
Alignment explanation
Indices: 32911--32963 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 24
32901 CAAACGGCAA
* * *
32911 AAATAACATGCAAATTAAAGCAGT
1 AAATAACAAGAAAATTAAAGCAGC
**
32935 AAATGGCAAGAAAATTAAAGCAGC
1 AAATAACAAGAAAATTAAAGCAGC
32959 AAATA
1 AAATA
32964 GTAAAGTCAA
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.57, C:0.11, G:0.15, T:0.17
Consensus pattern (24 bp):
AAATAACAAGAAAATTAAAGCAGC
Found at i:33372 original size:26 final size:26
Alignment explanation
Indices: 33320--33385 Score: 71
Period size: 26 Copynumber: 2.5 Consensus size: 26
33310 GGAGGAGAGG
* * *
33320 AGAAAAAAGAAATCAAAAAATATCAA
1 AGAAAAAAGAAAGCAAAAAAAAACAA
33346 AGAAAAAA-AAAGCAAAACAAAAACAA
1 AGAAAAAAGAAAGCAAAA-AAAAACAA
*
33372 ATAGAAAAAGAAAG
1 AGA-AAAAAGAAAG
33386 AAATCGAAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
25 8 0.24
26 16 0.48
27 5 0.15
28 4 0.12
ACGTcount: A:0.76, C:0.08, G:0.11, T:0.06
Consensus pattern (26 bp):
AGAAAAAAGAAAGCAAAAAAAAACAA
Found at i:33716 original size:35 final size:36
Alignment explanation
Indices: 33642--33736 Score: 126
Period size: 36 Copynumber: 2.7 Consensus size: 36
33632 ATCTTACAAA
* *
33642 AAACAACAAAGAAAAAATGAGAGAAAGTAACAATCG
1 AAACAACAAAGAAAAAAAGAGAGAAAGCAACAATCG
33678 AAACAACAAAGAAAAAAAGAGAGAAAGCATA-AAT-G
1 AAACAACAAAGAAAAAAAGAGAGAAAGCA-ACAATCG
*
33713 AAACAA-TAAGAAAAAAAGA-AGAAA
1 AAACAACAAAGAAAAAAAGAGAGAAA
33737 ATGGAACCGA
Statistics
Matches: 55, Mismatches: 3, Indels: 5
0.87 0.05 0.08
Matches are distributed among these distances:
33 5 0.09
34 12 0.22
35 7 0.13
36 30 0.55
37 1 0.02
ACGTcount: A:0.69, C:0.08, G:0.16, T:0.06
Consensus pattern (36 bp):
AAACAACAAAGAAAAAAAGAGAGAAAGCAACAATCG
Found at i:34195 original size:21 final size:20
Alignment explanation
Indices: 34170--34338 Score: 80
Period size: 14 Copynumber: 9.5 Consensus size: 20
34160 TGGAATGATG
34170 GGCATGGAATAAAAAAATGAA
1 GGCATGGAAT-AAAAAATGAA
**
34191 GGCAT--AAT--ATGATG--
1 GGCATGGAATAAAAAATGAA
34205 GGCATGGAATATAAAAATGAA
1 GGCATGGAATA-AAAAATGAA
*
34226 GGCATGGAAT----GATG--
1 GGCATGGAATAAAAAATGAA
34240 GGCATGGAATATAAAAATGAA
1 GGCATGGAATA-AAAAATGAA
*
34261 GGCATGGAAT----GATG--
1 GGCATGGAATAAAAAATGAA
34275 GGCATGGAATAAAAAATGAA
1 GGCATGGAATAAAAAATGAA
**
34295 GGCAT--AAT--ATGATG--
1 GGCATGGAATAAAAAATGAA
*
34309 GGCATGGAATAAAAATTGAA
1 GGCATGGAATAAAAAATGAA
34329 GGCATGGAAT
1 GGCATGGAAT
34339 GATGGATAAA
Statistics
Matches: 109, Mismatches: 13, Indels: 53
0.62 0.07 0.30
Matches are distributed among these distances:
14 30 0.28
16 20 0.18
18 9 0.08
19 10 0.09
20 15 0.14
21 25 0.23
ACGTcount: A:0.45, C:0.06, G:0.29, T:0.20
Consensus pattern (20 bp):
GGCATGGAATAAAAAATGAA
Found at i:34295 original size:34 final size:34
Alignment explanation
Indices: 34158--34343 Score: 286
Period size: 35 Copynumber: 5.4 Consensus size: 34
34148 ATAAAAAAAA
34158 CATGGAATGATGGGCATGGAATAAAAAAATGAAGG
1 CATGGAATGATGGGCATGGAAT-AAAAAATGAAGG
*
34193 CAT-AATATGATGGGCATGGAATATAAAAATGAAGG
1 CATGGA-ATGATGGGCATGGAATA-AAAAATGAAGG
34228 CATGGAATGATGGGCATGGAATATAAAAATGAAGG
1 CATGGAATGATGGGCATGGAATA-AAAAATGAAGG
34263 CATGGAATGATGGGCATGGAATAAAAAATGAAGG
1 CATGGAATGATGGGCATGGAATAAAAAATGAAGG
* *
34297 CAT-AATATGATGGGCATGGAATAAAAATTGAAGG
1 CATGGA-ATGATGGGCATGGAATAAAAAATGAAGG
34331 CATGGAATGATGG
1 CATGGAATGATGG
34344 ATAAAGATGA
Statistics
Matches: 141, Mismatches: 5, Indels: 11
0.90 0.03 0.07
Matches are distributed among these distances:
33 1 0.01
34 53 0.38
35 86 0.61
36 1 0.01
ACGTcount: A:0.44, C:0.06, G:0.30, T:0.20
Consensus pattern (34 bp):
CATGGAATGATGGGCATGGAATAAAAAATGAAGG
Found at i:35645 original size:79 final size:79
Alignment explanation
Indices: 35553--36056 Score: 812
Period size: 79 Copynumber: 6.4 Consensus size: 79
35543 GTTAAGTTTC
*
35553 TCAATTTTTCACAATCGGGGATACTCCAATCCCGTTATTTTCGAGGGGATACTCCAACCCCGGTT
1 TCAATTTTTCACAATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGTT
*
35618 TTATTTCTAAAATA
66 TTATTTCTAAAACA
* * *
35632 TTAATTTTTCACAATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCTAACCCCGGTT
1 TCAATTTTTCACAATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGTT
35697 TTATTTCTAAAACA
66 TTATTTCTAAAACA
* *
35711 CCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGTT
1 TCAATTTTTCACAATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGTT
*
35776 TTATTTCTAAAATA
66 TTATTTCTAAAACA
* * * *
35790 TTAATTTTTCACAATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCAGCT
1 TCAATTTTTCACAATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGTT
35855 TTATTTCTAAAACA
66 TTATTTCTAAAACA
* * * *
35869 TCAATTTTTCATAATCGGGGATACTCCAATCCCGTTATTTTCGAGGGGATACTCTAACCCCAGTT
1 TCAATTTTTCACAATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGTT
35934 TTATTTCTAAAACA
66 TTATTTCTAAAACA
* *
35948 CCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTTCGA-GGGATACTCCAACCCCGGTT
1 TCAATTTTTCACAATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGTT
* *
36012 TTATTTTTAAAATA
66 TTATTTCTAAAACA
*
36026 TTAATTTTTCACAATCGGGGATACTCCAACC
1 TCAATTTTTCACAATCGGGGATACTCCAACC
36057 TCGGTTTTAT
Statistics
Matches: 392, Mismatches: 33, Indels: 1
0.92 0.08 0.00
Matches are distributed among these distances:
78 58 0.15
79 334 0.85
ACGTcount: A:0.27, C:0.25, G:0.14, T:0.33
Consensus pattern (79 bp):
TCAATTTTTCACAATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGTT
TTATTTCTAAAACA
Found at i:35970 original size:237 final size:236
Alignment explanation
Indices: 35555--36056 Score: 896
Period size: 237 Copynumber: 2.1 Consensus size: 236
35545 TAAGTTTCTC
* * * *
35555 AATTTTTCACAATCGGGGATACTCCAATCCCGTTATTTTCGAGGGGATACTCCAACCCCGGTTTT
1 AATTTTTCACAATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCAGCTTT
* *
35620 ATTTCTAAAATATTAATTTTTCACAATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACT
66 ATTTCTAAAACATCAATTTTTCACAATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACT
*
35685 CTAACCCCGGTTTTATTTCTAAAACACCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATT
131 CTAACCCCAGTTTTATTTCTAAAACACCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATT
35750 TTCGAGGGGATACTCCAACCCCGGTTTTATTTCTAAAATATT
196 TTCGA-GGGATACTCCAACCCCGGTTTTATTTCTAAAATATT
35792 AATTTTTCACAATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCAGCTTT
1 AATTTTTCACAATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCAGCTTT
* * *
35857 ATTTCTAAAACATCAATTTTTCATAATCGGGGATACTCCAATCCCGTTATTTTCGAGGGGATACT
66 ATTTCTAAAACATCAATTTTTCACAATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACT
35922 CTAACCCCAGTTTTATTTCTAAAACACCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATT
131 CTAACCCCAGTTTTATTTCTAAAACACCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATT
*
35987 TTCGAGGGATACTCCAACCCCGGTTTTATTTTTAAAATATT
196 TTCGAGGGATACTCCAACCCCGGTTTTATTTCTAAAATATT
36028 AATTTTTCACAATCGGGGATACTCCAACC
1 AATTTTTCACAATCGGGGATACTCCAACC
36057 TCGGTTTTAT
Statistics
Matches: 254, Mismatches: 11, Indels: 1
0.95 0.04 0.00
Matches are distributed among these distances:
236 64 0.25
237 190 0.75
ACGTcount: A:0.27, C:0.25, G:0.15, T:0.33
Consensus pattern (236 bp):
AATTTTTCACAATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCAGCTTT
ATTTCTAAAACATCAATTTTTCACAATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACT
CTAACCCCAGTTTTATTTCTAAAACACCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATT
TTCGAGGGATACTCCAACCCCGGTTTTATTTCTAAAATATT
Found at i:36056 original size:51 final size:51
Alignment explanation
Indices: 35992--36176 Score: 203
Period size: 51 Copynumber: 3.6 Consensus size: 51
35982 TTATTTTCGA
* *
35992 GGGATACTCCAACCCCGGTTTTATTTTTAAAATATTAATTTTTCACAATCG
1 GGGATACTCCAACCCCGGTTTTATTTTTAAAACATTAATTTTTCATAATCG
* * *
36043 GGGATACTCCAACCTCGGTTTTATTTCTAAAACATCAATTTTTCATAATCG
1 GGGATACTCCAACCCCGGTTTTATTTTTAAAACATTAATTTTTCATAATCG
* * * * ** *
36094 GGGATAATCTAACCCCGATTTTATTTTTTAGAACA-TCGTTTTCCATAATCG
1 GGGATACTCCAACCCCGGTTTTA-TTTTTAAAACATTAATTTTTCATAATCG
* * *
36145 GGGATACTCTAGCCCC-GTTGTTATCTTTAAAA
1 GGGATACTCCAACCCCGGTT-TTATTTTTAAAA
36177 TACTATTTTT
Statistics
Matches: 112, Mismatches: 20, Indels: 5
0.82 0.15 0.04
Matches are distributed among these distances:
50 9 0.08
51 94 0.84
52 9 0.08
ACGTcount: A:0.28, C:0.21, G:0.14, T:0.38
Consensus pattern (51 bp):
GGGATACTCCAACCCCGGTTTTATTTTTAAAACATTAATTTTTCATAATCG
Found at i:42474 original size:61 final size:62
Alignment explanation
Indices: 42270--42642 Score: 449
Period size: 61 Copynumber: 6.3 Consensus size: 62
42260 TAGCCCTTCC
* * *
42270 AGTCCTCAAAGAGCAGGACGTCTTTTCCTTTTAAAGCCCATACAAGTTGGTGGCACCCTT-T
1 AGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTCT
* *
42331 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACTTTTCT
1 AGTCCTCAAAGAGCAGGACGCC-TTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTCT
* ** * * *
42394 AGTCCTCAAAGAGCAGGACGCCATCGCCTCTCAAAGCCCACACAAGTTGGTGGCA-TTTTCT
1 AGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTCT
* * *
42455 AGTCCTCAAAGAGTAGGACGCC---T-C--TTAAAGCCCACACAGGTTGGTGGCACC-TTCC
1 AGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTCT
* *
42510 AGTCCTCAAAGAGCAGGACACCTTTTCATTTTAAAGCCCACACAAGTTGGTGGCACCTTTC-
1 AGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTCT
* *
42571 AGTCCTCAAAGAGCATGA---C---TCCTTTTAAAGCCTACACAAGTTGGTGGCA-CTTTC-
1 AGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTCT
42625 AGTCCTCAAAGAGCAGGA
1 AGTCCTCAAAGAGCAGGA
42643 TGCTCTCTCC
Statistics
Matches: 279, Mismatches: 23, Indels: 27
0.85 0.07 0.08
Matches are distributed among these distances:
54 22 0.08
55 74 0.27
57 1 0.00
58 2 0.01
61 91 0.33
62 66 0.24
63 23 0.08
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (62 bp):
AGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTCT
Found at i:42575 original size:116 final size:116
Alignment explanation
Indices: 42264--42642 Score: 476
Period size: 116 Copynumber: 3.2 Consensus size: 116
42254 CTCTTTTAGC
* *
42264 CCTTCCAGTCCTCAAAGAGCAGGACGTCTTTTCCTTTTAAAGCCCATACAAGTTGGTGGCACCCT
1 CCTTCCAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCA-CCT
42329 TT-AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCA
65 TTCAGTCCTCAAAGAGCAGGACGCC----T-C-TT-AAAGCCCACACAAGTTGGTGGCA
* * * ** * * *
42387 CTTTTCTAGTCCTCAAAGAGCAGGACGCCATCGCCTCTCAAAGCCCACACAAGTTGGTGGCA-TT
1 C-CTTCCAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCT
* *
42451 TTCTAGTCCTCAAAGAGTAGGACGCCTCTTAAAGCCCACACAGGTTGGTGGCA
65 TTC-AGTCCTCAAAGAGCAGGACGCCTCTTAAAGCCCACACAAGTTGGTGGCA
* *
42504 CCTTCCAGTCCTCAAAGAGCAGGACACCTTTTCATTTTAAAGCCCACACAAGTTGGTGGCACCTT
1 CCTTCCAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTT
* * * *
42569 TCAGTCCTCAAAGAGCATGACTCCTTTTAAAGCCTACACAAGTTGGTGGCA
66 TCAGTCCTCAAAGAGCAGGACGCCTCTTAAAGCCCACACAAGTTGGTGGCA
*
42620 -CTTTCAGTCCTCAAAGAGCAGGA
1 CCTTCCAGTCCTCAAAGAGCAGGA
42643 TGCTCTCTCC
Statistics
Matches: 223, Mismatches: 29, Indels: 16
0.83 0.11 0.06
Matches are distributed among these distances:
115 22 0.10
116 94 0.42
117 27 0.12
118 2 0.01
119 1 0.00
120 1 0.00
122 3 0.01
123 1 0.00
124 72 0.32
ACGTcount: A:0.26, C:0.29, G:0.20, T:0.25
Consensus pattern (116 bp):
CCTTCCAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTT
TCAGTCCTCAAAGAGCAGGACGCCTCTTAAAGCCCACACAAGTTGGTGGCA
Found at i:42732 original size:54 final size:56
Alignment explanation
Indices: 42659--42799 Score: 169
Period size: 54 Copynumber: 2.5 Consensus size: 56
42649 CTCCTTTCGC
*
42659 CCTTTAGTCCTCAAAGAGCAGGACGCC-TTTC-AAAGCCCACAAAAGTTGGTGGCA
1 CCTTCAGTCCTCAAAGAGCAGGACGCCTTTTCTAAAGCCCACAAAAGTTGGTGGCA
* * *
42713 CCTTCAGTCCTTAAGGAGCAGGACGCCTTTTTCTTTTAAAGCCCACACAAGTTGGTGGCA
1 CCTTCAGTCCTCAAAGAGCAGGACGCC-TTTTC---TAAAGCCCACAAAAGTTGGTGGCA
* *
42773 CTTTTCAGTCCTCAAAAAGCAGGACGC
1 C-CTTCAGTCCTCAAAGAGCAGGACGC
42800 TCTCTCCTTT
Statistics
Matches: 72, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
54 24 0.33
56 4 0.06
60 23 0.32
61 21 0.29
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (56 bp):
CCTTCAGTCCTCAAAGAGCAGGACGCCTTTTCTAAAGCCCACAAAAGTTGGTGGCA
Found at i:42732 original size:93 final size:94
Alignment explanation
Indices: 42565--42735 Score: 263
Period size: 93 Copynumber: 1.8 Consensus size: 94
42555 GTTGGTGGCA
* * * * * *
42565 CCTTTCAGTCCTCAAAGAGCATGACTCCTTTTAAAGCCTACACAAGTTGGTGGCACTTTCAGTCC
1 CCTTTCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACAAAAGTTGGTGGCACCTTCAGTCC
42630 TCAAAGAGCAGGATGCTCTCTCCTTTCGC
66 TCAAAGAGCAGGATGCTCTCTCCTTTCGC
42659 CCTTT-AGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACAAAAGTTGGTGGCACCTTCAGTCC
1 CCTTTCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACAAAAGTTGGTGGCACCTTCAGTCC
* *
42723 TTAAGGAGCAGGA
66 TCAAAGAGCAGGA
42736 CGCCTTTTTC
Statistics
Matches: 69, Mismatches: 8, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
93 64 0.93
94 5 0.07
ACGTcount: A:0.26, C:0.29, G:0.20, T:0.25
Consensus pattern (94 bp):
CCTTTCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACAAAAGTTGGTGGCACCTTCAGTCC
TCAAAGAGCAGGATGCTCTCTCCTTTCGC
Found at i:42794 original size:154 final size:152
Alignment explanation
Indices: 42510--43431 Score: 956
Period size: 154 Copynumber: 5.9 Consensus size: 152
42500 GGCACCTTCC
*
42510 AGTCCTCAAAGAGCAGGACACCTTTTCATTTTAAAGCCCACACAAGTTGGTGGCACCTTTCAGTC
1 AGTCCTCAAAGAGCAGGACGCC-TTTC-----AAAGCCCACACAAGTTGGTGGCACC-TTCAGTC
* *
42575 CTCAAAGAGC---ATGAC-TCCTTTTAAAGCCTACACAAGTTGGTGGCAC-TTTCAGTCCTCAAA
59 CTCAAAGAGCAGGATGCCTTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAA
* *
42635 GAGCAGGATGCTCTCTCCTTTCGCCCTTT
124 GAGCAGGACGCTCTCTCCTTTCACCCTTT
* * *
42664 AGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACAAAAGTTGGTGGCACCTTCAGTCCTTAAGG
1 AGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTCAGTCCTCAAAG
* * *
42729 AGCAGGACGCCTTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAAAGCA
66 AGCAGGATGCC--TTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCA
42794 GGACGCTCTCTCCTTTCACCCTTT
129 GGACGCTCTCTCCTTTCACCCTTT
42818 AGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTCAGTCCTCAAAG
1 AGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTCAGTCCTCAAAG
* * * *
42883 AGTAGGATG----CCTTTCAAAGCCCATACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCATG
66 AGCAGGATGCCTTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGG
*
42944 ACGCTTTCTCCTTTCACCCTTT
131 ACGCTCTCTCCTTTCACCCTTT
* * * * *
42966 ACTCCTCAACGAGCAGGACGCCTTTTAAAGCCCACATAAGTTGGTGGCACTTTTCAGTCCTCAAA
1 AGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCAC-CTTCAGTCCTCAAA
*
43031 GAGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGC
65 GAGCAGGATGCC--TTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGC
* * * *
43096 AAGACGCCTTTTAAAGCCCACACAAGTTGGTGGCA-CTTTT
128 AGGACG-C---T----CTCTC-C---TT--T--CACCCTTT
**
43136 CAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCATTTTCCAGT
1 -AGTCCTCAAAGAGCAGGACGCC-TTT-C----AAAGCCCACACAAGTTGGTGGCACCTT-CAGT
* *
43201 CCTCAAAGAGCAGGA---C-GCCTTTCAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAA
58 CCTCAAAGAGCAGGATGCCTTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAA
* * *
43262 AGAGCAGGACGCTCTCCCCTTTCGCCTTTT
123 AGAGCAGGACGCTCTCTCCTTTCACCCTTT
* * * *
43292 CAGTCCTCAAAGAGCAGGATGCTTTCTTTTTAAAGCCCAAACAAGTTGGTGGCACTTTTCAGTCC
1 -AGTCCTCAAAGAGCAGGACGC---C-TTTCAAAGCCCACACAAGTTGGTGGCAC-CTTCAGTCC
* * * *
43357 TCAAAGAGCAGGATGCTTTCTTTTTGCAAATCCCACACTAGTTGGTGGCA-TCTTTCAGTCCTCA
60 TCAAAGAGCAGGATGCCTTCCTTTT--AAAGCCCACACAAGTTGGTGGCACT-TTTCAGTCCTCA
*
43421 AAGAGTAGGAC
122 AAGAGCAGGAC
43432 CCCTTTTCTT
Statistics
Matches: 659, Mismatches: 59, Indels: 94
0.81 0.07 0.12
Matches are distributed among these distances:
147 15 0.02
148 138 0.21
149 22 0.03
150 3 0.00
153 33 0.05
154 171 0.26
155 55 0.08
156 27 0.04
157 1 0.00
158 4 0.01
159 9 0.01
160 43 0.07
162 1 0.00
163 5 0.01
164 1 0.00
167 3 0.00
169 1 0.00
170 5 0.01
171 74 0.11
172 3 0.00
174 1 0.00
176 3 0.00
177 41 0.06
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.27
Consensus pattern (152 bp):
AGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTCAGTCCTCAAAG
AGCAGGATGCCTTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGG
ACGCTCTCTCCTTTCACCCTTT
Found at i:42877 original size:54 final size:54
Alignment explanation
Indices: 42813--42951 Score: 208
Period size: 54 Copynumber: 2.6 Consensus size: 54
42803 CTCCTTTCAC
*
42813 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA
1 CCTTCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA
* * *
42867 CCTTCAGTCCTCAAAGAGTAGGATGCCTTTCAAAGCCCATACAAGTTGGTGGCA
1 CCTTCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA
* *
42921 CTTTTCAGTCCTCAAAGAGCATGACG-CTTTC
1 C-CTTCAGTCCTCAAAGAGCAGGACGCCTTTC
42952 TCCTTTCACC
Statistics
Matches: 76, Mismatches: 8, Indels: 2
0.88 0.09 0.02
Matches are distributed among these distances:
54 56 0.74
55 20 0.26
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (54 bp):
CCTTCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA
Found at i:43050 original size:94 final size:94
Alignment explanation
Indices: 42874--43051 Score: 268
Period size: 94 Copynumber: 1.9 Consensus size: 94
42864 GCACCTTCAG
* * *
42874 TCCTCAAAGAGTAGGATGCCTTTCAAAGCCCATACAAGTTGGTGGCACTTTTCAGTCCTCAAAGA
1 TCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGA
*
42939 GCATGACGCTTTCTCCTTTCACCCTTTAC
66 GCAGGACGCTTTCTCCTTTCACCCTTTAC
* * *
42968 TCCTCAACGAGCAGGACGCCTTTTAAAGCCCACATAAGTTGGTGGCACTTTTCAGTCCTCAAAGA
1 TCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGA
*
43033 GCAGGATGCCTTT-TCCTTT
66 GCAGGACG-CTTTCTCCTTT
43052 TAAAGCCCAC
Statistics
Matches: 75, Mismatches: 8, Indels: 2
0.88 0.09 0.02
Matches are distributed among these distances:
94 71 0.95
95 4 0.05
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (94 bp):
TCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGA
GCAGGACGCTTTCTCCTTTCACCCTTTAC
Found at i:43056 original size:61 final size:60
Alignment explanation
Indices: 42986--43273 Score: 436
Period size: 61 Copynumber: 4.9 Consensus size: 60
42976 GAGCAGGACG
* *
42986 CCTTTTAAAGCCCACATAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGATGCCTTTT
1 CCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGACGCC-TTT
* *
43047 CCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAAGACG-----
1 CCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGACGCCTTT
43102 CCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGACGCCTTTT
1 CCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGACGCC-TTT
43163 CCTTTTAAAGCCCACACAAGTTGGTGGCA-TTTTCCAGTCCTCAAAGAGCAGGACGCCTTT
1 CCTTTTAAAGCCCACACAAGTTGGTGGCACTTTT-CAGTCCTCAAAGAGCAGGACGCCTTT
43223 -C----AAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGACGC
1 CCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGACGC
43274 TCTCCCCTTT
Statistics
Matches: 213, Mismatches: 6, Indels: 22
0.88 0.02 0.09
Matches are distributed among these distances:
55 98 0.46
56 4 0.02
59 1 0.00
60 7 0.03
61 103 0.48
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.25
Consensus pattern (60 bp):
CCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGACGCCTTT
Found at i:43131 original size:55 final size:55
Alignment explanation
Indices: 42968--43273 Score: 434
Period size: 55 Copynumber: 5.3 Consensus size: 55
42958 CACCCTTTAC
* *
42968 TCCTCAACGAGCAGGACGCCTTTTAAAGCCCACATAAGTTGGTGGCACTTTTCAG
1 TCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCAG
* *
43023 TCCTCAAAGAGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTCAG
1 TCCTCAAAGAGCAGGA---C---GCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCAG
*
43084 TCCTCAAAGAGCAAGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCAG
1 TCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCAG
43139 TCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCA-TTTTCCAG
1 TCCTCAAAGAGCAGGACG------CCTTTTAAAGCCCACACAAGTTGGTGGCACTTTT-CAG
*
43200 TCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACTTTTCAG
1 TCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCAG
43255 TCCTCAAAGAGCAGGACGC
1 TCCTCAAAGAGCAGGACGC
43274 TCTCCCCTTT
Statistics
Matches: 228, Mismatches: 9, Indels: 28
0.86 0.03 0.11
Matches are distributed among these distances:
55 118 0.52
56 4 0.02
58 2 0.01
60 4 0.02
61 100 0.44
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (55 bp):
TCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCAG
Found at i:43162 original size:27 final size:27
Alignment explanation
Indices: 43078--43163 Score: 66
Period size: 27 Copynumber: 3.1 Consensus size: 27
43068 TGGTGGCACC
*
43078 TTTCAGTCCTCAAAGAGCAAGACGCCT
1 TTTCAGTCCTCAAAGAGCAGGACGCCT
* * * * ** **
43105 TTTAAAGCCCACACA-AGTTGGTGGCACT
1 TTT-CAGTCCTCAAAGAGCAGGACGC-CT
43133 TTTCAGTCCTCAAAGAGCAGGACGCCT
1 TTTCAGTCCTCAAAGAGCAGGACGCCT
43160 TTTC
1 TTTC
43164 CTTTTAAAGC
Statistics
Matches: 39, Mismatches: 17, Indels: 6
0.63 0.27 0.10
Matches are distributed among these distances:
27 21 0.54
28 18 0.46
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.26
Consensus pattern (27 bp):
TTTCAGTCCTCAAAGAGCAGGACGCCT
Found at i:43283 original size:116 final size:116
Alignment explanation
Indices: 42968--43273 Score: 542
Period size: 116 Copynumber: 2.6 Consensus size: 116
42958 CACCCTTTAC
* *
42968 TCCTCAACGAGCAGGACGCCTTTTAAAGCCCACATAAGTTGGTGGCACTTTTCAGTCCTCAAAGA
1 TCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGA
*
43033 GCAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTCAG
66 GCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTCAG
*
43084 TCCTCAAAGAGCAAGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGA
1 TCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGA
*
43149 GCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCA-TTTTCCAG
66 GCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTT-CAG
*
43200 TCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGA
1 TCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGA
43265 GCAGGACGC
66 GCAGGACGC
43274 TCTCCCCTTT
Statistics
Matches: 182, Mismatches: 7, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
115 3 0.02
116 179 0.98
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (116 bp):
TCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGA
GCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTCAG
Found at i:43321 original size:30 final size:30
Alignment explanation
Indices: 43287--43380 Score: 72
Period size: 28 Copynumber: 3.2 Consensus size: 30
43277 CCCCTTTCGC
43287 CTTTTCAGTCCTCAAAGAGCAGGATGCTTT
1 CTTTTCAGTCCTCAAAGAGCAGGATGCTTT
* * ** *
43317 CTTTTTAAAG-CC-CAAACAAGTTGG-TGGC--A
1 C-TTTT-CAGTCCTCAAA-GAGCAGGAT-GCTTT
43346 CTTTTCAGTCCTCAAAGAGCAGGATGCTTT
1 CTTTTCAGTCCTCAAAGAGCAGGATGCTTT
43376 CTTTT
1 CTTTT
43381 TGCAAATCCC
Statistics
Matches: 45, Mismatches: 10, Indels: 18
0.62 0.14 0.25
Matches are distributed among these distances:
27 2 0.04
28 12 0.27
29 6 0.13
30 11 0.24
31 12 0.27
32 2 0.04
ACGTcount: A:0.24, C:0.22, G:0.19, T:0.34
Consensus pattern (30 bp):
CTTTTCAGTCCTCAAAGAGCAGGATGCTTT
Found at i:43354 original size:215 final size:213
Alignment explanation
Indices: 43078--43492 Score: 588
Period size: 215 Copynumber: 1.9 Consensus size: 213
43068 TGGTGGCACC
*
43078 TTTCAGTCCTCAAAGAGCAAGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCT
1 TTTCAGTCCTCAAAGAGCAAGACGCCTTTTAAAGCCCAAACAAGTTGGTGGCACTTTTCAGTCCT
43143 CAAAGAGCAGGACGCCTTTTCCTTTT-AAAGCCCACACAAGTTGGTGGCAT-TTTCCAGTCCTCA
66 CAAAGAGCAGGACG-C-TTTCCTTTTCAAAGCCCACACAAGTTGGTGGCATCTTT-CAGTCCTCA
* *
43206 AAGAGCAGGA-CGC-C-TTTCAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCA
128 AAGAGCAGGACCCCTCTTTTCAAAGACCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCA
43268 GGACGCTCTCCCCTTTCGCCT
193 GGACGCTCTCCCCTTTCGCCT
* *
43289 TTTCAGTCCTCAAAGAGCAGGATGCTTTCTTTTTAAAGCCCAAACAAGTTGGTGGCACTTTTCAG
1 TTTCAGTCCTCAAAGAGCAAGACGC---C-TTTTAAAGCCCAAACAAGTTGGTGGCACTTTTCAG
* * * *
43354 TCCTCAAAGAGCAGGATGCTTTCTTTTTGCAAATCCCACACTAGTTGGTGGCATCTTTCAGTCCT
62 TCCTCAAAGAGCAGGACGCTTTCCTTTT-CAAAGCCCACACAAGTTGGTGGCATCTTTCAGTCCT
* *
43419 CAAAGAGTAGGACCCCTTTTCTTTTCAAAGACCACACGAGTTGGTGGCACTTTTCAGTCCTCAAA
126 CAAAGAGCAGGACCCC---TCTTTTCAAAGACCACACAAGTTGGTGGCACTTTTCAGTCCTCAAA
*
43484 GAGTAGGAC
188 GAGCAGGAC
43493 ACACTTCTTC
Statistics
Matches: 179, Mismatches: 12, Indels: 16
0.86 0.06 0.08
Matches are distributed among these distances:
211 23 0.13
213 8 0.04
214 2 0.01
215 91 0.51
216 5 0.03
220 1 0.01
221 49 0.27
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.28
Consensus pattern (213 bp):
TTTCAGTCCTCAAAGAGCAAGACGCCTTTTAAAGCCCAAACAAGTTGGTGGCACTTTTCAGTCCT
CAAAGAGCAGGACGCTTTCCTTTTCAAAGCCCACACAAGTTGGTGGCATCTTTCAGTCCTCAAAG
AGCAGGACCCCTCTTTTCAAAGACCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGA
CGCTCTCCCCTTTCGCCT
Found at i:43364 original size:99 final size:96
Alignment explanation
Indices: 43192--43369 Score: 286
Period size: 99 Copynumber: 1.8 Consensus size: 96
43182 GTTGGTGGCA
*
43192 TTTTCCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACTTTTCAGTC
1 TTTTCCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCAAACAAGTTGGTGGCACTTTTCAGTC
43257 CTCAAAGAGCAGGACGCTCTCCCCTTTCGCC
66 CTCAAAGAGCAGGACGCTCTCCCCTTTCGCC
* *
43288 TTTT-CAGTCCTCAAAGAGCAGGATGCTTTCTTTTTAAAGCCCAAACAAGTTGGTGGCACTTTTC
1 TTTTCCAGTCCTCAAAGAGCAGGACGC---C-TTTCAAAGCCCAAACAAGTTGGTGGCACTTTTC
43352 AGTCCTCAAAGAGCAGGA
62 AGTCCTCAAAGAGCAGGA
43370 TGCTTTCTTT
Statistics
Matches: 75, Mismatches: 3, Indels: 5
0.90 0.04 0.06
Matches are distributed among these distances:
95 21 0.28
96 4 0.05
98 1 0.01
99 49 0.65
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.26
Consensus pattern (96 bp):
TTTTCCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCAAACAAGTTGGTGGCACTTTTCAGTC
CTCAAAGAGCAGGACGCTCTCCCCTTTCGCC
Found at i:43492 original size:61 final size:59
Alignment explanation
Indices: 43287--43491 Score: 268
Period size: 61 Copynumber: 3.4 Consensus size: 59
43277 CCCCTTTCGC
* *
43287 CTTTTCAGTCCTCAAAGAGCAGGATGCTTTCTTTTTAAAGCCCAAACAAGTTGGTGGCA
1 CTTTTCAGTCCTCAAAGAGCAGGATGCTTTCTTTTCAAAGCCCACACAAGTTGGTGGCA
* *
43346 CTTTTCAGTCCTCAAAGAGCAGGATGCTTTCTTTTTGCAAATCCCACACTAGTTGGTGGCA
1 CTTTTCAGTCCTCAAAGAGCAGGATGCTTTC-TTTT-CAAAGCCCACACAAGTTGGTGGCA
* ** * *
43407 -TCTTTCAGTCCTCAAAGAGTAGGACCCCTTTTCTTTTCAAAGACCACACGAGTTGGTGGCA
1 CT-TTTCAGTCCTCAAAGAGCAGGA-TGC-TTTCTTTTCAAAGCCCACACAAGTTGGTGGCA
*
43468 CTTTTCAGTCCTCAAAGAGTAGGA
1 CTTTTCAGTCCTCAAAGAGCAGGA
43492 CACACTTCTT
Statistics
Matches: 130, Mismatches: 10, Indels: 10
0.87 0.07 0.07
Matches are distributed among these distances:
59 31 0.24
60 5 0.04
61 84 0.65
62 6 0.05
63 4 0.03
ACGTcount: A:0.25, C:0.24, G:0.20, T:0.31
Consensus pattern (59 bp):
CTTTTCAGTCCTCAAAGAGCAGGATGCTTTCTTTTCAAAGCCCACACAAGTTGGTGGCA
Found at i:43522 original size:42 final size:40
Alignment explanation
Indices: 43475--43565 Score: 114
Period size: 42 Copynumber: 2.2 Consensus size: 40
43465 GCACTTTTCA
43475 GTCCTCAAAGAGTAGGACAC-ACTTC-TTCCCCTTTTTCACTTT
1 GTCCTCAAAGAGTAGGAC-CTACTTCATT-CCCTTTTT--CTTT
* *
43517 GTCCTCAAGGAGTAGGACCTATTTCATTCCCTTTTTCTTT
1 GTCCTCAAAGAGTAGGACCTACTTCATTCCCTTTTTCTTT
43557 GTCCTCAAA
1 GTCCTCAAA
43566 AAAATGGGAC
Statistics
Matches: 44, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
40 12 0.27
41 1 0.02
42 29 0.66
43 2 0.05
ACGTcount: A:0.21, C:0.29, G:0.13, T:0.37
Consensus pattern (40 bp):
GTCCTCAAAGAGTAGGACCTACTTCATTCCCTTTTTCTTT
Found at i:44224 original size:21 final size:20
Alignment explanation
Indices: 44199--44368 Score: 64
Period size: 14 Copynumber: 9.5 Consensus size: 20
44189 TGGAATGATG
44199 GGCATGGAATAAAAAAATGAA
1 GGCATGGAAT-AAAAAATGAA
**
44220 GGCAT--AAT--ATGATG--
1 GGCATGGAATAAAAAATGAA
44234 GGCATGGAATATAAAAATGAA
1 GGCATGGAATA-AAAAATGAA
*
44255 GGCATGGAAT----GATG--
1 GGCATGGAATAAAAAATGAA
44269 GGCATGGAATATAAAAATGAA
1 GGCATGGAATA-AAAAATGAA
* *
44290 GGCATGCAAT----GAT--A
1 GGCATGGAATAAAAAATGAA
44304 GGCATGGAATAAAAAAATGAA
1 GGCATGGAAT-AAAAAATGAA
**
44325 GGCAT--AAT--ATGATG--
1 GGCATGGAATAAAAAATGAA
*
44339 GGCATGGAATAAAAATTGAA
1 GGCATGGAATAAAAAATGAA
44359 GGCATGGAAT
1 GGCATGGAAT
44369 GATGGATAAA
Statistics
Matches: 107, Mismatches: 15, Indels: 55
0.60 0.08 0.31
Matches are distributed among these distances:
14 30 0.28
16 19 0.18
18 3 0.03
19 15 0.14
20 10 0.09
21 30 0.28
ACGTcount: A:0.46, C:0.06, G:0.28, T:0.20
Consensus pattern (20 bp):
GGCATGGAATAAAAAATGAA
Found at i:44233 original size:35 final size:35
Alignment explanation
Indices: 44187--44373 Score: 263
Period size: 35 Copynumber: 5.4 Consensus size: 35
44177 ATAAAAAAAA
*
44187 CATGGAATGATGGGCATGGAATAAAAAAATGAAGG
1 CATGAAATGATGGGCATGGAATAAAAAAATGAAGG
*
44222 CAT-AATATGATGGGCATGGAATATAAAAATGAAGG
1 CATGAA-ATGATGGGCATGGAATAAAAAAATGAAGG
* *
44257 CATGGAATGATGGGCATGGAATATAAAAATGAAGG
1 CATGAAATGATGGGCATGGAATAAAAAAATGAAGG
* *
44292 CATGCAATGATAGGCATGGAATAAAAAAATGAAGG
1 CATGAAATGATGGGCATGGAATAAAAAAATGAAGG
*
44327 CAT-AATATGATGGGCATGGAAT-AAAAATTGAAGG
1 CATGAA-ATGATGGGCATGGAATAAAAAAATGAAGG
*
44361 CATGGAATGATGG
1 CATGAAATGATGG
44374 ATAAAGATGA
Statistics
Matches: 138, Mismatches: 10, Indels: 9
0.88 0.06 0.06
Matches are distributed among these distances:
34 23 0.17
35 114 0.83
36 1 0.01
ACGTcount: A:0.44, C:0.06, G:0.29, T:0.20
Consensus pattern (35 bp):
CATGAAATGATGGGCATGGAATAAAAAAATGAAGG
Found at i:45675 original size:79 final size:79
Alignment explanation
Indices: 45583--46169 Score: 881
Period size: 79 Copynumber: 7.4 Consensus size: 79
45573 GTTAAGTTTC
* *
45583 TCAATTTTTCACAAACGGGGATACTCCAATCCCGTTATTTTCGAGGGGATACTCCAACCCCGGTT
1 TCAATTTTTCACAATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGTT
*
45648 TTATTTCTAAAATA
66 TTATTTCTAAAACA
* *
45662 TTAATTTTTCACAATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGGTT
1 TCAATTTTTCACAATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGTT
*
45727 TTATTTCCAAAACA
66 TTATTTCTAAAACA
* * * *
45741 CCAATTTTTCATAATCGGGGATACTCCAACCCCTTTATTTTCGAGGGGATACTCCAACCCCGGTC
1 TCAATTTTTCACAATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGTT
*
45806 TTATTTCTAAAATA
66 TTATTTCTAAAACA
* * * *
45820 TTAATTTTTCACAATCGGAGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGGCT
1 TCAATTTTTCACAATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGTT
45885 TTATTTCTAAAACA
66 TTATTTCTAAAACA
* * *
45899 TCAATTTTTCATAAT-GAGGGATACTCCAATCCCGTTA-TTTCTGATGGGATACTCCAACCCCGG
1 TCAATTTTTCACAATCG-GGGATACTCCAACCCCGTTATTTTC-GAGGGGATACTCCAACCCCGG
45962 TTTTATTTCTAAAACA
64 TTTTATTTCTAAAACA
* * *
45978 CCAATTTGTCATAATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGTT
1 TCAATTTTTCACAATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGTT
* *
46043 TTATTTCAAAAATA
66 TTATTTCTAAAACA
* * * *
46057 TTAATTTTTCACAATCGGGGATACTCAAACCCCGTTATTTCCGAGGGGATACTCCACCCCCGGTT
1 TCAATTTTTCACAATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGTT
46122 TTATTTCTAAAACA
66 TTATTTCTAAAACA
* *
46136 TCAATTTTTCATAATCGGGGATACTCTAACCCCG
1 TCAATTTTTCACAATCGGGGATACTCCAACCCCG
46170 ATTTTATTTT
Statistics
Matches: 456, Mismatches: 48, Indels: 8
0.89 0.09 0.02
Matches are distributed among these distances:
78 4 0.01
79 447 0.98
80 5 0.01
ACGTcount: A:0.27, C:0.26, G:0.15, T:0.32
Consensus pattern (79 bp):
TCAATTTTTCACAATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGTT
TTATTTCTAAAACA
Found at i:46000 original size:237 final size:237
Alignment explanation
Indices: 45585--46169 Score: 983
Period size: 237 Copynumber: 2.5 Consensus size: 237
45575 TAAGTTTCTC
* * *
45585 AATTTTTCACAAACGGGGATACTCCAATCCCGTTATTTTCGAGGGGATACTCCAACCCCGGTTTT
1 AATTTTTCACAATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGGTTTT
* * *
45650 ATTTCTAAAATATTAATTTTTCACAATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACT
66 ATTTCTAAAACATCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACT
* *
45715 CCAACCCCGGTTTTATTTCCAAAACACCAATTTTTCATAATCGGGGATACTCCAACCCCTTTATT
131 CCAACCCCGGTTTTATTTCCAAAACACCAATTTGTCATAATCGGGGATACTCCAACCCCGTTATT
*
45780 TTCGAGGGGATACTCCAACCCCGGTCTTATTTCTAAAATATT
196 TTCGAGGGGATACTCCAACCCCGGTCTTATTTCAAAAATATT
* *
45822 AATTTTTCACAATCGGAGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGGCTTT
1 AATTTTTCACAATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGGTTTT
* * *
45887 ATTTCTAAAACATCAATTTTTCATAAT-GAGGGATACTCCAATCCCGTTATTTCTGATGGGATAC
66 ATTTCTAAAACATCAATTTTTCATAATCG-GGGATACTCCAACCCCGTTATTTCCGAGGGGATAC
*
45951 TCCAACCCCGGTTTTATTTCTAAAACACCAATTTGTCATAATCGGGGATACTCCAACCCCGTTAT
130 TCCAACCCCGGTTTTATTTCCAAAACACCAATTTGTCATAATCGGGGATACTCCAACCCCGTTAT
*
46016 TTTCGAGGGGATACTCCAACCCCGGTTTTATTTCAAAAATATT
195 TTTCGAGGGGATACTCCAACCCCGGTCTTATTTCAAAAATATT
* *
46059 AATTTTTCACAATCGGGGATACTCAAACCCCGTTATTTCCGAGGGGATACTCCACCCCCGGTTTT
1 AATTTTTCACAATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGGTTTT
*
46124 ATTTCTAAAACATCAATTTTTCATAATCGGGGATACTCTAACCCCG
66 ATTTCTAAAACATCAATTTTTCATAATCGGGGATACTCCAACCCCG
46170 ATTTTATTTT
Statistics
Matches: 324, Mismatches: 22, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
236 1 0.00
237 322 0.99
238 1 0.00
ACGTcount: A:0.27, C:0.26, G:0.15, T:0.32
Consensus pattern (237 bp):
AATTTTTCACAATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGGTTTT
ATTTCTAAAACATCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACT
CCAACCCCGGTTTTATTTCCAAAACACCAATTTGTCATAATCGGGGATACTCCAACCCCGTTATT
TTCGAGGGGATACTCCAACCCCGGTCTTATTTCAAAAATATT
Found at i:46177 original size:51 final size:49
Alignment explanation
Indices: 46101--46244 Score: 144
Period size: 51 Copynumber: 2.8 Consensus size: 49
46091 TTATTTCCGA
* * *
46101 GGGGATACTCCACCCCCGGTTTTATTTCTAAAACATCAATTTTTCATAATC
1 GGGGATACTCTAACCCC-GTTTTATTTCTAAAACA-CAATTTTCCATAATC
* * **
46152 GGGGATACTCTAACCCCGATTTTATTTTTTAGAACACCGTTTTCCATAATC
1 GGGGATACTCTAACCCCG-TTTTA-TTTCTAAAACACAATTTTCCATAATC
* * * *
46203 GGGGATACTCTAGCCCCGTTGTTATCTCTAAAATACTATTTT
1 GGGGATACTCTAACCCCGTT-TTATTTCTAAAACACAATTTT
46245 TTTCTCGTCA
Statistics
Matches: 76, Mismatches: 14, Indels: 7
0.78 0.14 0.07
Matches are distributed among these distances:
50 15 0.20
51 52 0.68
52 9 0.12
ACGTcount: A:0.26, C:0.24, G:0.14, T:0.37
Consensus pattern (49 bp):
GGGGATACTCTAACCCCGTTTTATTTCTAAAACACAATTTTCCATAATC
Found at i:52362 original size:32 final size:33
Alignment explanation
Indices: 52300--52363 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 33
52290 CACACACAGA
*
52300 TGTATCGATATATATTGCTTAGTATCAATACAT
1 TGTATCGATACATATTGCTTAGTATCAATACAT
* *
52333 TGTATCGATACATGTT-CTTTGTATCAATACA
1 TGTATCGATACATATTGCTTAGTATCAATACA
52364 CCATGAAATG
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 14 0.50
33 14 0.50
ACGTcount: A:0.31, C:0.14, G:0.12, T:0.42
Consensus pattern (33 bp):
TGTATCGATACATATTGCTTAGTATCAATACAT
Found at i:53079 original size:19 final size:19
Alignment explanation
Indices: 53055--53104 Score: 82
Period size: 19 Copynumber: 2.6 Consensus size: 19
53045 AAATAGAAAA
*
53055 TGTATCAATACATAAGTGT
1 TGTATCGATACATAAGTGT
*
53074 TGTATCGATACATAAGTTT
1 TGTATCGATACATAAGTGT
53093 TGTATCGATACA
1 TGTATCGATACA
53105 ATGTATTGCT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.34, C:0.12, G:0.16, T:0.38
Consensus pattern (19 bp):
TGTATCGATACATAAGTGT
Found at i:53155 original size:21 final size:21
Alignment explanation
Indices: 53129--53170 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
53119 AGCTACTGCC
53129 AAGGAAATGTATCGATACATT
1 AAGGAAATGTATCGATACATT
*
53150 AAGGAAATGTATTGATACATT
1 AAGGAAATGTATCGATACATT
53171 GTATCGATAC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.43, C:0.07, G:0.19, T:0.31
Consensus pattern (21 bp):
AAGGAAATGTATCGATACATT
Found at i:55696 original size:51 final size:51
Alignment explanation
Indices: 55636--55910 Score: 195
Period size: 51 Copynumber: 5.3 Consensus size: 51
55626 TTATTTCCGA
** *
55636 GGGGATACTCCAACCTCGATTTTATTTTTAAAACACCAGTTCTCCACAATC
1 GGGGATACTCCAACCTCGATTTTATTTCCAAAACACCATTTCTCCACAATC
*
55687 GGGGATACTCCAA-CTCCGATTTTATTTCCAAAACACTGATTTCT-CACAATC
1 GGGGATACTCCAACCT-CGATTTTATTTCCAAAACAC-CATTTCTCCACAATC
* ***** * * ** *
55738 GGGGATACTCCAACCCCGTTATTTTATCAGGGATACTCCCA--TC-CCGTTATTTC
1 GGGGATACTCCAACCTCG--ATTTTATTTCCAAAAC-ACCATTTCTCC-ACA-ATC
** *
55791 TGAGGGGATACTCCAACCTCGATTTTATTTCTGAAACACCAATTCTCCACAATC
1 ---GGGGATACTCCAACCTCGATTTTATTTCCAAAACACCATTTCTCCACAATC
* *
55845 GGGGATACACCAA-CTCTGATTTTATTTCCAAAACACTGATTTCT-CACAATC
1 GGGGATACTCCAACCTC-GATTTTATTTCCAAAACAC-CATTTCTCCACAATC
* *
55896 GAGGATACTCAAACC
1 GGGGATACTCCAACC
55911 CTGTTATTTC
Statistics
Matches: 172, Mismatches: 34, Indels: 35
0.71 0.14 0.15
Matches are distributed among these distances:
50 5 0.03
51 102 0.59
52 13 0.08
53 16 0.09
54 14 0.08
55 3 0.02
56 19 0.11
ACGTcount: A:0.29, C:0.28, G:0.13, T:0.30
Consensus pattern (51 bp):
GGGGATACTCCAACCTCGATTTTATTTCCAAAACACCATTTCTCCACAATC
Found at i:55798 original size:28 final size:29
Alignment explanation
Indices: 55738--55808 Score: 92
Period size: 28 Copynumber: 2.5 Consensus size: 29
55728 TCTCACAATC
55738 GGGGATACTCCAACCCCGTTATTTTATCA
1 GGGGATACTCCAACCCCGTTATTTTATCA
* * * *
55767 -GGGATACTCCCATCCCGTTA-TTTCTGA
1 GGGGATACTCCAACCCCGTTATTTTATCA
55794 GGGGATACTCCAACC
1 GGGGATACTCCAACC
55809 TCGATTTTAT
Statistics
Matches: 35, Mismatches: 6, Indels: 3
0.80 0.14 0.07
Matches are distributed among these distances:
27 5 0.14
28 30 0.86
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.28
Consensus pattern (29 bp):
GGGGATACTCCAACCCCGTTATTTTATCA
Found at i:55902 original size:158 final size:158
Alignment explanation
Indices: 55610--55919 Score: 539
Period size: 158 Copynumber: 2.0 Consensus size: 158
55600 TTTTCATCGC
* *
55610 GGATACTCCCATCCCGTTATTTCCGAGGGGATACTCCAACCTCGATTTTATTTTTAAAACACCAG
1 GGATACTCCCATCCCGTTATTTCCGAGGGGATACTCCAACCTCGATTTTATTTCTAAAACACCAA
* *
55675 TTCTCCACAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAACACTGATTTCTCACAATCGG
66 TTCTCCACAATCGGGGATACACCAACTCCGATTTTATTTCCAAAACACTGATTTCTCACAATCGA
*
55740 GGATACTCCAACCCCGTTATTTTATCAG
131 GGATACTCAAACCCCGTTATTTTATCAG
* *
55768 GGATACTCCCATCCCGTTATTTCTGAGGGGATACTCCAACCTCGATTTTATTTCTGAAACACCAA
1 GGATACTCCCATCCCGTTATTTCCGAGGGGATACTCCAACCTCGATTTTATTTCTAAAACACCAA
*
55833 TTCTCCACAATCGGGGATACACCAACTCTGATTTTATTTCCAAAACACTGATTTCTCACAATCGA
66 TTCTCCACAATCGGGGATACACCAACTCCGATTTTATTTCCAAAACACTGATTTCTCACAATCGA
*
55898 GGATACTCAAACCCTGTTATTT
131 GGATACTCAAACCCCGTTATTT
55920 CCGAGGGGAT
Statistics
Matches: 143, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
158 143 1.00
ACGTcount: A:0.27, C:0.28, G:0.14, T:0.31
Consensus pattern (158 bp):
GGATACTCCCATCCCGTTATTTCCGAGGGGATACTCCAACCTCGATTTTATTTCTAAAACACCAA
TTCTCCACAATCGGGGATACACCAACTCCGATTTTATTTCCAAAACACTGATTTCTCACAATCGA
GGATACTCAAACCCCGTTATTTTATCAG
Found at i:56138 original size:130 final size:126
Alignment explanation
Indices: 55767--56141 Score: 331
Period size: 130 Copynumber: 2.9 Consensus size: 126
55757 TATTTTATCA
* * * * * *
55767 GGGATACTCCCATCCCGTTATTTCTGAGGGGATACTCCAACCTCGATTTTATTTCTGAAACACCA
1 GGGATACTCCAACCCCGTTATTT-TCAGGGGATACTCCAACC-CGATTTTATTTCTAAAACATCT
* * * * * *
55832 ATTCTCCACAATCGGGGATACACCAACTCTGATTTTATTTCCAAAACACTGATTTCTCACAATCG
64 ATTTTCCACAATCAGGG-TACTCCAACCCTG-TTTTATTTCCAAAATATTGATTTCTCACAATCG
* * * * * *
55897 AGGATACTCAAACCCTGTTATTTCCGAGGGGATACTCCAACCCCGACTTTATTTCTAAAATAT-T
1 GGGATACTCCAACCCCGTTATTTTC-AGGGGATACTCCAA-CCCGATTTTATTTCTAAAACATCT
* * * * ** * *
55961 GA-TTTCTTACAATCGAGGATACTTCGACCCTGGCCTTATTTCTAAAATATTGATTTCTCATAAT
64 -ATTTTC-CACAATC-AGGGTACTCCAACCCT-GTTTTATTTCCAAAATATTGATTTCTCACAAT
56025 CG
125 CG
* *
56027 GGGATACTCCAACCCCATTATTTTCACGGGGATACTCCAATCCCGATTTTATTTTTAAAACATCT
1 GGGATACTCCAACCCCGTTATTTTCA-GGGGATACTCCAA-CCCGATTTTATTTCTAAAACATCT
* * *
56092 ATTTTCCATAATCAAGGGTACTCCAACCCCGTTGTTATCTCCAAAATATT
64 ATTTTCCACAATC-AGGGTACTCCAACCCTGTT-TTATTTCCAAAATATT
56142 AAATTTTTCA
Statistics
Matches: 189, Mismatches: 46, Indels: 20
0.74 0.18 0.08
Matches are distributed among these distances:
129 5 0.03
130 174 0.92
131 10 0.05
ACGTcount: A:0.28, C:0.26, G:0.13, T:0.33
Consensus pattern (126 bp):
GGGATACTCCAACCCCGTTATTTTCAGGGGATACTCCAACCCGATTTTATTTCTAAAACATCTAT
TTTCCACAATCAGGGTACTCCAACCCTGTTTTATTTCCAAAATATTGATTTCTCACAATCG
Found at i:62386 original size:61 final size:61
Alignment explanation
Indices: 62254--62717 Score: 587
Period size: 61 Copynumber: 7.6 Consensus size: 61
62244 CTCTTTTAGC
* * * *
62254 CCTTCCAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCA
1 CCTTTCAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTT-AAAGCCCACACAAGTTGGTGGCA
62316 CCTTT-AGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCA
1 CCTTTCAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCA
* * * *
62376 CCTTTCAGTCCTCAATGAGTAGGACGCCTTTTCTTTTTAAAGCCCACACGAGTTGGTGGCA
1 CCTTTCAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCA
* * * * * *
62437 CCCTCCAGTCCTCAACGAGTAGGATGCCTTTTTCTTTTAAAGCCCACACAAGTTGGTGGCA
1 CCTTTCAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCA
* * * * *
62498 CTTTTCTAGTCCTCAAATAGTAGGACGCCTTTTCCTTTCAAAGCCCACACATGTTGGTGGCA
1 CCTTTC-AGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCA
** ** * *
62560 TTTTTTGGTCCTCAAAGAGCAGGATGCCTTTT-CTTTCAAAGCCCACACAAGTTGGTGGCA
1 CCTTTCAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCA
* * *
62620 -TTTTCTAGTCCTCAAAGAGCAGGACCCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCA
1 CCTTTC-AGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCA
*
62681 -CTTCCTAGTCCTCAAAGAGCAGGACG-CTCTTTCCTTT
1 CCTTTC-AGTCCTCAAAGAGCAGGACGCCT-TTTCCTTT
62718 CGCCTTTTTG
Statistics
Matches: 356, Mismatches: 41, Indels: 11
0.87 0.10 0.03
Matches are distributed among these distances:
59 4 0.01
60 78 0.22
61 217 0.61
62 57 0.16
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.30
Consensus pattern (61 bp):
CCTTTCAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCA
Found at i:62693 original size:244 final size:245
Alignment explanation
Indices: 62260--62704 Score: 648
Period size: 244 Copynumber: 1.8 Consensus size: 245
62250 TAGCCCTTCC
* *
62260 AGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCTTTAGTC
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCTTTAGTC
*
62325 CTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCA
66 CTCAAAGAGCAGGACGCCTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCA
* * * * * * *
62390 ATGAGTAGGACGCCTTTTCTTTTTAAAGCCCACACGAGTTGGTGGCACCCTCCAGTCCTCAACGA
131 AAGAGCAGGACCCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCACCCTCCAGTCCTCAAAGA
*
62455 GTAGGATGCCTTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCT
196 GCAGGATGCCTTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCT
* * ** *
62505 AGTCCTCAAATAGTAGGACGCC-TTTTCCTTTCAAAGCCCACAC-ATGTTGGTGGCATTTTTTGG
1 AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGA-GTTGGTGGCA-CCTTTAG
* *
62568 TCCTCAAAGAGCAGGATGCCTTTT-CTTTCAAAGCCCACACAAGTTGGTGGCA-TTTTCTAGTCC
64 TCCTCAAAGAGCAGGACGCCTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTC-AGTCC
*
62631 TCAAAGAGCAGGACCCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCA-CTTCCTAGTCCTCA
128 TCAAAGAGCAGGACCCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCACCCTCC-AGTCCTCA
62695 AAGAGCAGGA
192 AAGAGCAGGA
62705 CGCTCTTTCC
Statistics
Matches: 177, Mismatches: 19, Indels: 9
0.86 0.09 0.04
Matches are distributed among these distances:
243 9 0.05
244 122 0.69
245 46 0.26
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.29
Consensus pattern (245 bp):
AGTCCTCAAAGAGCAGGACGCCTTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCTTTAGTC
CTCAAAGAGCAGGACGCCTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCA
AAGAGCAGGACCCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCACCCTCCAGTCCTCAAAGA
GCAGGATGCCTTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCT
Found at i:62811 original size:154 final size:159
Alignment explanation
Indices: 62561--62859 Score: 430
Period size: 154 Copynumber: 1.9 Consensus size: 159
62551 TTGGTGGCAT
** *
62561 TTTTTGGTCCTCAAAGAGCAGGATGCCTTTTCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCT
1 TTTTTGGTCCTCAAAGAGCAGGATGCC--TTCTTTCAAAGCCCACACAAGCCGGTGGCACTTTCT
*
62626 AGTCCTCAAAGAGCAGGACCCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTC-CTAGT
64 AGTCCTCAAAGAGCAAGACCCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTCTC-AGT
62690 CCTCAAAGAGCAGGACGCTCTTTCCTTTCGCC
128 CCTCAAAGAGCAGGACGCTCTTTCCTTTCGCC
*
62722 TTTTT-GTCCTTAAAGAGCAGGATGCC-T-TTT-AAAGCCCACACAAGCCGGTGGCACTTTC-AG
1 TTTTTGGTCCTCAAAGAGCAGGATGCCTTCTTTCAAAGCCCACACAAGCCGGTGGCACTTTCTAG
* ** * * *
62782 TCCTTAAAGAGCAAGATGCCTTCTCCTTTTAAAGCCCACATAAGTTGGTGGCACTTTTCAGTCTT
66 TCCTCAAAGAGCAAGACCCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTCTCAGTCCT
62847 CAAAGAGCAGGAC
131 CAAAGAGCAGGAC
62860 ACCTTTAAAG
Statistics
Matches: 126, Mismatches: 11, Indels: 9
0.86 0.08 0.06
Matches are distributed among these distances:
154 71 0.56
155 26 0.21
156 3 0.02
157 1 0.01
160 20 0.16
161 5 0.04
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.29
Consensus pattern (159 bp):
TTTTTGGTCCTCAAAGAGCAGGATGCCTTCTTTCAAAGCCCACACAAGCCGGTGGCACTTTCTAG
TCCTCAAAGAGCAAGACCCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTCTCAGTCCT
CAAAGAGCAGGACGCTCTTTCCTTTCGCC
Found at i:62898 original size:54 final size:54
Alignment explanation
Indices: 62727--62913 Score: 180
Period size: 54 Copynumber: 3.3 Consensus size: 54
62717 TCGCCTTTTT
* ** **
62727 GTCCTTAAAGAGCAGGATGCCTTTTAAAGCCCACACAAGCCGGTGGCACTTT-CA
1 GTCCTCAAAGAGCAGGACACC-TTTAAAGCCCACACAAGTTGGTGGCACTTTCCA
* * * * *
62781 GTCCTTAAAGAGCAAGATGCCTTCTCCTTTTAAAGCCCACATAAGTTGGTGGCACTTTTCA
1 GTCCTCAAAGAGC-AG--G---ACACC-TTTAAAGCCCACACAAGTTGGTGGCACTTTCCA
*
62842 GTCTTCAAAGAGCAGGACACCTTTAAAGCCCACACAAGTTGGTGGCA-TTTCCCA
1 GTCCTCAAAGAGCAGGACACCTTTAAAGCCCACACAAGTTGGTGGCACTTT-CCA
62896 GTCCTCAAAGAGCAGGAC
1 GTCCTCAAAGAGCAGGAC
62914 GCTCTCTCCT
Statistics
Matches: 112, Mismatches: 13, Indels: 16
0.79 0.09 0.11
Matches are distributed among these distances:
53 3 0.03
54 57 0.51
55 5 0.04
57 1 0.01
58 1 0.01
60 32 0.29
61 13 0.12
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (54 bp):
GTCCTCAAAGAGCAGGACACCTTTAAAGCCCACACAAGTTGGTGGCACTTTCCA
Found at i:62955 original size:56 final size:56
Alignment explanation
Indices: 62878--62992 Score: 221
Period size: 56 Copynumber: 2.1 Consensus size: 56
62868 AGCCCACACA
62878 AGTTGGTGGCATTTCCCAGTCCTCAAAGAGCAGGACGCTCTCTCCTTTCGCCCTTT
1 AGTTGGTGGCATTTCCCAGTCCTCAAAGAGCAGGACGCTCTCTCCTTTCGCCCTTT
*
62934 AGTTGGTGGCATTTCCTAGTCCTCAAAGAGCAGGACGCTCTCTCCTTTCGCCCTTT
1 AGTTGGTGGCATTTCCCAGTCCTCAAAGAGCAGGACGCTCTCTCCTTTCGCCCTTT
62990 AGT
1 AGT
62993 CCTCAAAGAG
Statistics
Matches: 58, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 58 1.00
ACGTcount: A:0.17, C:0.30, G:0.22, T:0.31
Consensus pattern (56 bp):
AGTTGGTGGCATTTCCCAGTCCTCAAAGAGCAGGACGCTCTCTCCTTTCGCCCTTT
Found at i:63021 original size:264 final size:269
Alignment explanation
Indices: 62474--63242 Score: 948
Period size: 264 Copynumber: 2.8 Consensus size: 269
62464 CTTTTTCTTT
* * * *
62474 TAAAGCCCACACAAGTTGGTGGCACTTTTCTAGTCCTCAAATAGTAGGACGCCTTTTCCTTTCAA
1 TAAAGCCCACACAAGTTGGTGGCACTTTTCTAGTCCTCAAAGAGCAGGAAGCCTTTTCCTTTTAA
* * **
62539 AGCCCACACATGTTGGTGGCATTTTTTGGTCCTCAAAGAGCAGGATGCCTTTTCTTTCAAAGCCC
66 AGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGA--CC----CTTTCAAAGCCC
* * *
62604 ACACAAGTTGGTGGCATTTTCTAGTCCTCAAAGAGCAGGAC-CCCTTCTCCTTTTAAAGCCCACA
125 ACACAAGTTGGTGGCATTTCCCAGTCCTCAAAGAGCAGGACGCTC-TCTCC-TTT-AAGCCCACA
* * * *
62668 CAAGTTGGTGGCACTTCCTAGTCCTCAAAGAGCAGGACGCTCTTTCCTTTCGCCTTTTTGTCCTT
187 CAAGTTGGTGGCACTTCCTAGTCCTCAAAGAGCAGGACGCTCTCTCCTTTCGCCCTTTAGTCCTC
* * *
62733 AAAGAGCAGGATGCCTTT
252 AAAGAGAAGGAAGCCTTC
** * * * *
62751 TAAAGCCCACACAAGCCGGTGGCAC-TTTC-AGTCCTTAAAGAGCAAGATGCCTTCTCCTTTTAA
1 TAAAGCCCACACAAGTTGGTGGCACTTTTCTAGTCCTCAAAGAGCAGGAAGCCTTTTCCTTTTAA
* *
62814 AGCCCACATAAGTTGGTGGCACTTTTCAGTCTTCAAAGAGCAGGACACCTTT-AAAGCCCACACA
66 AGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGAC-CCTTTCAAAGCCCACACA
* ***
62878 AGTTGGTGGCATTTCCCAGTCCTCAAAGAGCAGGACGCTCTCTCCTTT-CG-CC-CTTTAGTTGG
130 AGTTGGTGGCATTTCCCAGTCCTCAAAGAGCAGGACGCTCTCTCCTTTAAGCCCACACAAGTTGG
*
62940 TGGCATTTCCTAGTCCTCAAAGAGCAGGACGCTCTCTCCTTTCGCCCTTTAGTCCTCAAAGAGAA
195 TGGCACTTCCTAGTCCTCAAAGAGCAGGACGCTCTCTCCTTTCGCCCTTTAGTCCTCAAAGAGAA
63005 GGAAGCCTTC
260 GGAAGCCTTC
63015 TAAAGCCCACACAAGTTGGTGGCACTTTTCTAGTCCTCAAAGAGCAGGAAGCCTTTTCCTTTTCA
1 TAAAGCCCACACAAGTTGGTGGCACTTTTCTAGTCCTCAAAGAGCAGGAAGCCTTTTCCTTTT-A
* * * * *
63080 AAGCCCACACAAGTTGGTGGCACCTTTCCGTCCTCAATGAGCAGGATGCCTTTCAAAGCCCACAT
65 AAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGA-CCCTTTCAAAGCCCACAC
* * *
63145 GAGTTGGTGGCA--CCCTCTAGTCCTCAAAGAGCAGGATGCGT-TCTCCTTTTAAAGCCCACACA
129 AAGTTGGTGGCATTTCC-C-AGTCCTCAAAGAGCAGGACGC-TCTCTCC-TTT-AAGCCCACACA
63207 AGTTGGTGGCACTATCC-AGTCCTCAAAGAGCAGGAC
189 AGTTGGTGGCACT-TCCTAGTCCTCAAAGAGCAGGAC
63243 ACACTTCCTT
Statistics
Matches: 425, Mismatches: 51, Indels: 36
0.83 0.10 0.07
Matches are distributed among these distances:
264 97 0.23
265 6 0.01
266 31 0.07
267 48 0.11
268 49 0.12
269 55 0.13
270 6 0.01
271 1 0.00
272 2 0.00
273 33 0.08
274 4 0.01
275 66 0.16
276 4 0.01
277 23 0.05
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.27
Consensus pattern (269 bp):
TAAAGCCCACACAAGTTGGTGGCACTTTTCTAGTCCTCAAAGAGCAGGAAGCCTTTTCCTTTTAA
AGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGACCCTTTCAAAGCCCACACAA
GTTGGTGGCATTTCCCAGTCCTCAAAGAGCAGGACGCTCTCTCCTTTAAGCCCACACAAGTTGGT
GGCACTTCCTAGTCCTCAAAGAGCAGGACGCTCTCTCCTTTCGCCCTTTAGTCCTCAAAGAGAAG
GAAGCCTTC
Found at i:63228 original size:61 final size:60
Alignment explanation
Indices: 63010--63241 Score: 269
Period size: 61 Copynumber: 3.9 Consensus size: 60
63000 GAGAAGGAAG
* * * *
63010 CCTTCTAAAGCCCACACAAGTTGGTGGCACTTTTCTAGTCCTCAAAGAGCAGGAAGCCTTTT
1 CCTTTTAAAGCCCACACAAGTTGGTGGCAC-TTTCCAGTCCTCAAAGAGCAGGATG-CGTTT
*
63072 CCTTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCC-GTCCTCAATGAGCAGGAT--G---
1 CCTTTT-AAAGCCCACACAAGTTGGTGGCA-CTTTCCAGTCCTCAAAGAGCAGGATGCGTTT
* ** ** *
63128 CCTTTCAAAGCCCACATGAGTTGGTGGCACCCTCTAGTCCTCAAAGAGCAGGATGCGTTCT
1 CCTTTTAAAGCCCACACAAGTTGGTGGCACTTTCCAGTCCTCAAAGAGCAGGATGCGTT-T
*
63189 CCTTTTAAAGCCCACACAAGTTGGTGGCACTATCCAGTCCTCAAAGAGCAGGA
1 CCTTTTAAAGCCCACACAAGTTGGTGGCACTTTCCAGTCCTCAAAGAGCAGGA
63242 CACACTTCCT
Statistics
Matches: 143, Mismatches: 18, Indels: 19
0.79 0.10 0.11
Matches are distributed among these distances:
54 3 0.02
55 38 0.27
56 5 0.03
57 1 0.01
61 47 0.33
62 21 0.15
63 27 0.19
64 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.21, T:0.25
Consensus pattern (60 bp):
CCTTTTAAAGCCCACACAAGTTGGTGGCACTTTCCAGTCCTCAAAGAGCAGGATGCGTTT
Found at i:63238 original size:116 final size:119
Alignment explanation
Indices: 62990--63241 Score: 361
Period size: 118 Copynumber: 2.2 Consensus size: 119
62980 TTCGCCCTTT
* **
62990 AGTCCTCAAAGAGAAGGAAGCCTTCTAAAGCCCACACAAGTTGGTGGCACTTTTCTAGTCCTCAA
1 AGTCCTCAAAGAGCAGGAAGCCTTCTAAAGCCCACACAAGTTGGTGGCACTCCTCTAGTCCTCAA
* *
63055 AGAGCAGGAAGCCTTTTCCTTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCC
66 AGAGCAGGAAGCCTTCTCCTTTTCAAAGCCCACACAAGTTGGTGGCACCTATCC
* * **
63109 -GTCCTCAATGAGCAGGATGCCTT-TCAAAGCCCACATGAGTTGGTGGCAC-CCTCTAGTCCTCA
1 AGTCCTCAAAGAGCAGGAAGCCTTCT-AAAGCCCACACAAGTTGGTGGCACTCCTCTAGTCCTCA
* *
63171 AAGAGCAGGATGCGTTCTCCTTTT-AAAGCCCACACAAGTTGGTGGCA-CTATCC
65 AAGAGCAGGAAGCCTTCTCCTTTTCAAAGCCCACACAAGTTGGTGGCACCTATCC
63224 AGTCCTCAAAGAGCAGGA
1 AGTCCTCAAAGAGCAGGA
63242 CACACTTCCT
Statistics
Matches: 119, Mismatches: 12, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
115 5 0.04
116 39 0.33
117 33 0.28
118 42 0.35
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (119 bp):
AGTCCTCAAAGAGCAGGAAGCCTTCTAAAGCCCACACAAGTTGGTGGCACTCCTCTAGTCCTCAA
AGAGCAGGAAGCCTTCTCCTTTTCAAAGCCCACACAAGTTGGTGGCACCTATCC
Found at i:74135 original size:14 final size:14
Alignment explanation
Indices: 74116--74168 Score: 92
Period size: 14 Copynumber: 3.9 Consensus size: 14
74106 CCTCCACAAA
74116 AAAAAAAACAAAAC
1 AAAAAAAACAAAAC
74130 AAAAAAAACAAAAC
1 AAAAAAAACAAAAC
74144 AAAAAAAA-AAAAC
1 AAAAAAAACAAAAC
74157 -AAAAAAACAAAA
1 AAAAAAAACAAAA
74169 AAAGAAGAAG
Statistics
Matches: 38, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
12 7 0.18
13 9 0.24
14 22 0.58
ACGTcount: A:0.89, C:0.11, G:0.00, T:0.00
Consensus pattern (14 bp):
AAAAAAAACAAAAC
Found at i:74140 original size:26 final size:25
Alignment explanation
Indices: 74111--74171 Score: 95
Period size: 26 Copynumber: 2.4 Consensus size: 25
74101 GGCGTCCTCC
*
74111 ACAAAAAAAAAAACAAAACAAAAAAA
1 ACAAAAAAAAAAAAAAAAC-AAAAAA
74137 ACAAAACAAAAAAAAAAAACAAAAAA
1 ACAAAA-AAAAAAAAAAAACAAAAAA
74163 ACAAAAAAA
1 ACAAAAAAA
74172 GAAGAAGGAA
Statistics
Matches: 33, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
25 3 0.09
26 18 0.55
27 12 0.36
ACGTcount: A:0.89, C:0.11, G:0.00, T:0.00
Consensus pattern (25 bp):
ACAAAAAAAAAAAAAAAACAAAAAA
Found at i:74154 original size:32 final size:32
Alignment explanation
Indices: 74113--74200 Score: 108
Period size: 32 Copynumber: 2.7 Consensus size: 32
74103 CGTCCTCCAC
74113 AAAAAAAAAAACAAAACAAAAAAAACAA-AACA
1 AAAAAAAAAAACAAAACAAAAAAAA-AAGAACA
*
74145 AAAAAAAAAAACAAAA-AAACAAAAAAAGAAGA
1 AAAAAAAAAAACAAAACAAA-AAAAAAAGAACA
*
74177 AGGAAAAAAAAACAACAACAAAAA
1 A-AAAAAAAAAACAA-AACAAAAA
74201 GGGTCCGGAT
Statistics
Matches: 49, Mismatches: 2, Indels: 8
0.83 0.03 0.14
Matches are distributed among these distances:
31 5 0.10
32 25 0.51
33 12 0.24
34 4 0.08
35 3 0.06
ACGTcount: A:0.85, C:0.10, G:0.05, T:0.00
Consensus pattern (32 bp):
AAAAAAAAAAACAAAACAAAAAAAAAAGAACA
Found at i:74169 original size:14 final size:13
Alignment explanation
Indices: 74113--74200 Score: 88
Period size: 14 Copynumber: 6.5 Consensus size: 13
74103 CGTCCTCCAC
74113 AAAAAAAAAAACA
1 AAAAAAAAAAACA
74126 AAACAAAAAAAACA
1 AAA-AAAAAAAACA
74140 AAACAAAAAAAA-A
1 AAA-AAAAAAAACA
*
74153 AAACAAAAAAACA
1 AAAAAAAAAAACA
**
74166 AAAAAAGAAGAAGGA
1 AAAAAA-AA-AAACA
*
74181 AAAAAAAACAACA
1 AAAAAAAAAAACA
74194 ACAAAAA
1 A-AAAAA
74201 GGGTCCGGAT
Statistics
Matches: 63, Mismatches: 7, Indels: 9
0.80 0.09 0.11
Matches are distributed among these distances:
12 7 0.11
13 16 0.25
14 31 0.49
15 9 0.14
ACGTcount: A:0.85, C:0.10, G:0.05, T:0.00
Consensus pattern (13 bp):
AAAAAAAAAAACA
Found at i:74188 original size:1 final size:1
Alignment explanation
Indices: 74113--74171 Score: 64
Period size: 1 Copynumber: 59.0 Consensus size: 1
74103 CGTCCTCCAC
* * * * * *
74113 AAAAAAAAAAACAAAACAAAAAAAACAAAACAAAAAAAAAAAACAAAAAAACAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
74172 GAAGAAGGAA
Statistics
Matches: 46, Mismatches: 12, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
1 46 1.00
ACGTcount: A:0.90, C:0.10, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:74199 original size:13 final size:12
Alignment explanation
Indices: 74111--74200 Score: 65
Period size: 13 Copynumber: 7.0 Consensus size: 12
74101 GGCGTCCTCC
*
74111 ACAAAAAAAAAA
1 ACAAAACAAAAA
74123 ACAAAACAAAAAAA
1 ACAAAAC--AAAAA
74137 ACAAAACAAAAAA
1 ACAAAAC-AAAAA
*
74150 AAAAAACAAAAAA
1 ACAAAAC-AAAAA
*
74163 ACAAAA-AAAGA
1 ACAAAACAAAAA
* *
74174 AGAAGGAAAAAAAA
1 ACAA--AACAAAAA
74188 ACAACAACAAAAA
1 ACAA-AACAAAAA
74201 GGGTCCGGAT
Statistics
Matches: 64, Mismatches: 9, Indels: 9
0.78 0.11 0.11
Matches are distributed among these distances:
11 7 0.11
12 6 0.09
13 32 0.50
14 19 0.30
ACGTcount: A:0.84, C:0.11, G:0.04, T:0.00
Consensus pattern (12 bp):
ACAAAACAAAAA
Found at i:75697 original size:30 final size:30
Alignment explanation
Indices: 75629--75799 Score: 183
Period size: 30 Copynumber: 5.9 Consensus size: 30
75619 TTACCCTTCA
* * *
75629 AAAGCCTACAAATCAGTGGCAACC--TTCA
1 AAAGCCCACAAGTCAGTGGCAACCTTTTCC
* * *
75657 AAAGCACACAAGTCAGTGGCACCCTTTTTC
1 AAAGCCCACAAGTCAGTGGCAACCTTTTCC
* *
75687 AAAGCCCACAAATCAGTGGCAACC--TTCA
1 AAAGCCCACAAGTCAGTGGCAACCTTTTCC
* * *
75715 AAAGCCCACAGGTCAATGGC-ATCTTTTCC
1 AAAGCCCACAAGTCAGTGGCAACCTTTTCC
*
75744 AAAGCCCACAAGTCAGTGGCACCCTTTTCC
1 AAAGCCCACAAGTCAGTGGCAACCTTTTCC
75774 AAAGCCCACAAGGT-AGTGGCAACCTT
1 AAAGCCCACAA-GTCAGTGGCAACCTT
75800 CAAAAGCACA
Statistics
Matches: 116, Mismatches: 21, Indels: 10
0.79 0.14 0.07
Matches are distributed among these distances:
27 2 0.02
28 39 0.34
29 21 0.18
30 52 0.45
31 2 0.02
ACGTcount: A:0.33, C:0.31, G:0.17, T:0.19
Consensus pattern (30 bp):
AAAGCCCACAAGTCAGTGGCAACCTTTTCC
Found at i:75709 original size:58 final size:57
Alignment explanation
Indices: 75629--75769 Score: 201
Period size: 58 Copynumber: 2.5 Consensus size: 57
75619 TTACCCTTCA
* * *
75629 AAAGCCTACAAATCAGTGGCAACCTTCAAAAGCACACAAGTCAGTGGCACCCTTTTTC
1 AAAGCCCACAAATCAGTGGCAACCTTCAAAAGCACACAAGTCAATGGCA-CCTTTTCC
* * *
75687 AAAGCCCACAAATCAGTGGCAACCTTCAAAAGCCCACAGGTCAATGGCATCTTTTCC
1 AAAGCCCACAAATCAGTGGCAACCTTCAAAAGCACACAAGTCAATGGCACCTTTTCC
* *
75744 AAAGCCCACAAGTCAGTGGCACCCTT
1 AAAGCCCACAAATCAGTGGCAACCTT
75770 TTCCAAAGCC
Statistics
Matches: 75, Mismatches: 8, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
57 30 0.40
58 45 0.60
ACGTcount: A:0.33, C:0.31, G:0.16, T:0.19
Consensus pattern (57 bp):
AAAGCCCACAAATCAGTGGCAACCTTCAAAAGCACACAAGTCAATGGCACCTTTTCC
Found at i:75822 original size:27 final size:30
Alignment explanation
Indices: 75739--75850 Score: 83
Period size: 30 Copynumber: 3.8 Consensus size: 30
75729 AATGGCATCT
* **
75739 TTTCCAAAGCC-CACAAGTCAGTGGC-ACCC
1 TTTCAAAAGCCACACAAGTTGGT-GCAACCC
* * *
75768 TTTTCCAAAGCC-CACAAGGTAGTGGCAA-CC
1 -TTTCAAAAGCCACACAAGTTGGT-GCAACCC
*
75798 -TTCAAAAG-CACATAAGTTGGTGCAACCC
1 TTTCAAAAGCCACACAAGTTGGTGCAACCC
75826 TTTCAAAAGCCCACACAAGTTGGTG
1 TTTCAAAAG-CCACACAAGTTGGTG
75851 GCATCTTCTT
Statistics
Matches: 69, Mismatches: 7, Indels: 11
0.79 0.08 0.13
Matches are distributed among these distances:
27 5 0.07
28 17 0.25
29 8 0.12
30 25 0.36
31 14 0.20
ACGTcount: A:0.31, C:0.29, G:0.19, T:0.21
Consensus pattern (30 bp):
TTTCAAAAGCCACACAAGTTGGTGCAACCC
Found at i:75835 original size:87 final size:87
Alignment explanation
Indices: 75623--75840 Score: 246
Period size: 87 Copynumber: 2.5 Consensus size: 87
75613 CATTCCTTAC
* * * * *
75623 CCTTCAAAAGC-CTACAAATCAGTGGCAACC-TTCAAAAGCACACAAGTCAGTGGCACCCTTTTT
1 CCTTCAAAAGCAC-ACAAGTCAATGGCACCCTTTCAAAAGCCCACAAGTCAGTGGCACCCTTTTC
75686 CAAAGCCCACAAATCAGTGGCAA
65 CAAAGCCCACAAATCAGTGGCAA
* * * * *
75709 CCTTCAAAAGCCCACAGGTCAATGGCATCTTTTCCAAAGCCCACAAGTCAGTGGCACCCTTTTCC
1 CCTTCAAAAGCACACAAGTCAATGGCACCCTTTCAAAAGCCCACAAGTCAGTGGCACCCTTTTCC
*
75774 AAAGCCCACAAGGT-AGTGGCAA
66 AAAGCCCACAA-ATCAGTGGCAA
* ***
75796 CCTTCAAAAGCACATAAGTTGGT-GCAACCCTTTCAAAAGCCCACA
1 CCTTCAAAAGCACACAAGTCAATGGC-ACCCTTTCAAAAGCCCACA
75841 CAAGTTGGTG
Statistics
Matches: 110, Mismatches: 18, Indels: 7
0.81 0.13 0.05
Matches are distributed among these distances:
86 25 0.23
87 84 0.76
88 1 0.01
ACGTcount: A:0.33, C:0.31, G:0.16, T:0.19
Consensus pattern (87 bp):
CCTTCAAAAGCACACAAGTCAATGGCACCCTTTCAAAAGCCCACAAGTCAGTGGCACCCTTTTCC
AAAGCCCACAAATCAGTGGCAA
Found at i:76379 original size:32 final size:30
Alignment explanation
Indices: 76343--76401 Score: 75
Period size: 32 Copynumber: 1.9 Consensus size: 30
76333 GAAATCAAAT
76343 ACAAAGAGCT-TAGAAAAATAATAACAATATGA
1 ACAAA-AGCTCTAGAAAAAT-ATAA-AATATGA
*
76375 ACAAAAGCTCTTGAAAAATATAAAATA
1 ACAAAAGCTCTAGAAAAATATAAAATA
76402 CTTTGATCTA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
30 4 0.16
31 8 0.32
32 13 0.52
ACGTcount: A:0.59, C:0.10, G:0.10, T:0.20
Consensus pattern (30 bp):
ACAAAAGCTCTAGAAAAATATAAAATATGA
Found at i:76701 original size:19 final size:20
Alignment explanation
Indices: 76661--76712 Score: 88
Period size: 19 Copynumber: 2.6 Consensus size: 20
76651 TACAAGCCAA
76661 TGTATCGATACATATTTTTTG
1 TGTATCGATACATA-TTTTTG
76682 TGTATCGATACATA-TTTTG
1 TGTATCGATACATATTTTTG
76701 TGTATCGATACA
1 TGTATCGATACA
76713 AGTTTGGCTA
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
19 17 0.55
21 14 0.45
ACGTcount: A:0.27, C:0.12, G:0.15, T:0.46
Consensus pattern (20 bp):
TGTATCGATACATATTTTTG
Found at i:77257 original size:98 final size:98
Alignment explanation
Indices: 77088--77421 Score: 400
Period size: 98 Copynumber: 3.4 Consensus size: 98
77078 GATCCTAACA
*
77088 AAGTCCAATGTCGCTGGCCATGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATATCGCTG
1 AAGTCCAATGTCGCTGGCCATGAATCAGCACATTGGCACCTTCATCTTTAAGTCTAATATCGCTG
*
77153 ACCTTGAATCAGCATATTGGCACCTTTATCTTT
66 ACCTTGAATCAGCACATTGGCACCTTTATCTTT
* * * *
77186 AAGTCCAATGTCCCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGACTGATATCGCTG
1 AAGTCCAATGTCGCTGGCCATGAATCAGCACATTGGCACCTTCATCTTTAAGTCTAATATCGCTG
* * **
77251 ACCTTGAATCAGTACATCGGCACCTCAACCATCTTT
66 ACCTTGAATCAGCACATTGGCACCT---TTATCTTT
* * * * * * * *
77287 AAGCCCAATATCGCTGGTCTTGAATCAGCATATTGGCA-CGTCATCTTCAAGTCTAATGTCGCTG
1 AAGTCCAATGTCGCTGGCCATGAATCAGCACATTGGCACCTTCATCTTTAAGTCTAATATCGCTG
* * *
77351 ACCGTGAATCAGCACATTGGCATTCTTTTTATCTTC
66 ACCTTGAATCAGCACATTGGCA--C-CTTTATCTTT
* *
77387 AAGTCTAATGTCGCTGACCATGAATCAGCACATTG
1 AAGTCCAATGTCGCTGGCCATGAATCAGCACATTG
77422 ACATCCTTTT
Statistics
Matches: 196, Mismatches: 34, Indels: 10
0.82 0.14 0.04
Matches are distributed among these distances:
98 82 0.42
100 73 0.37
101 39 0.20
102 1 0.01
103 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.17, T:0.31
Consensus pattern (98 bp):
AAGTCCAATGTCGCTGGCCATGAATCAGCACATTGGCACCTTCATCTTTAAGTCTAATATCGCTG
ACCTTGAATCAGCACATTGGCACCTTTATCTTT
Found at i:77432 original size:52 final size:49
Alignment explanation
Indices: 77088--77421 Score: 355
Period size: 49 Copynumber: 6.7 Consensus size: 49
77078 GATCCTAACA
* *
77088 AAGTCCAATGTCGCTGGCCATGAATCAGCACATTGGCACCTTCATCTTT
1 AAGTCCAATGTCGCTGACCTTGAATCAGCACATTGGCACCTTCATCTTT
* * *
77137 AAGTCCAATATCGCTGACCTTGAATCAGCATATTGGCACCTTTATCTTT
1 AAGTCCAATGTCGCTGACCTTGAATCAGCACATTGGCACCTTCATCTTT
* *
77186 AAGTCCAATGTCCCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTT
1 AAGTCCAATGTCGCTGACCTTGAATCAGCACATTGGCACCTTCATCTTT
* ** * * * *
77235 AAGACTGATATCGCTGACCTTGAATCAGTACATCGGCACCTCAACCATCTTT
1 AAGTCCAATGTCGCTGACCTTGAATCAGCACATTGGCACCT---TCATCTTT
* * ** * * *
77287 AAGCCCAATATCGCTGGTCTTGAATCAGCATATTGGCA-CGTCATCTTC
1 AAGTCCAATGTCGCTGACCTTGAATCAGCACATTGGCACCTTCATCTTT
* * * * *
77335 AAGTCTAATGTCGCTGACCGTGAATCAGCACATTGGCATTCTTTTTATCTTC
1 AAGTCCAATGTCGCTGACCTTGAATCAGCACATTGGCA--C-CTTCATCTTT
* *
77387 AAGTCTAATGTCGCTGACCATGAATCAGCACATTG
1 AAGTCCAATGTCGCTGACCTTGAATCAGCACATTG
77422 ACATCCTTTT
Statistics
Matches: 237, Mismatches: 41, Indels: 11
0.82 0.14 0.04
Matches are distributed among these distances:
48 37 0.16
49 121 0.51
51 1 0.00
52 78 0.33
ACGTcount: A:0.26, C:0.27, G:0.17, T:0.31
Consensus pattern (49 bp):
AAGTCCAATGTCGCTGACCTTGAATCAGCACATTGGCACCTTCATCTTT
Found at i:78111 original size:19 final size:19
Alignment explanation
Indices: 78087--78138 Score: 95
Period size: 19 Copynumber: 2.7 Consensus size: 19
78077 TTTCAACGAT
78087 TTGTATCGATACATAAGTG
1 TTGTATCGATACATAAGTG
*
78106 TTGTATCGATACATAAGTT
1 TTGTATCGATACATAAGTG
78125 TTGTATCGATACAT
1 TTGTATCGATACAT
78139 TGTATTGATA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 32 1.00
ACGTcount: A:0.31, C:0.12, G:0.17, T:0.40
Consensus pattern (19 bp):
TTGTATCGATACATAAGTG
Found at i:78166 original size:33 final size:32
Alignment explanation
Indices: 78106--78171 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 32
78096 TACATAAGTG
78106 TTGTATCGATACATAAGTTTTGTATCGATACA
1 TTGTATCGATACATAAGTTTTGTATCGATACA
*
78138 TTGTATTGATACACTAA-TCTTTGTATCGATACA
1 TTGTATCGATACA-TAAGT-TTTGTATCGATACA
78171 T
1 T
78172 GCAGGGAAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
32 13 0.42
33 18 0.58
ACGTcount: A:0.30, C:0.14, G:0.14, T:0.42
Consensus pattern (32 bp):
TTGTATCGATACATAAGTTTTGTATCGATACA
Found at i:79577 original size:15 final size:15
Alignment explanation
Indices: 79557--79587 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
79547 ATTTTGTTTG
*
79557 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
79572 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
79587 G
1 G
79588 GATATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Found at i:79611 original size:22 final size:22
Alignment explanation
Indices: 79585--79631 Score: 94
Period size: 22 Copynumber: 2.1 Consensus size: 22
79575 CTTCCTCATT
79585 TTGGATATTTTTATCTTGCTCC
1 TTGGATATTTTTATCTTGCTCC
79607 TTGGATATTTTTATCTTGCTCC
1 TTGGATATTTTTATCTTGCTCC
79629 TTG
1 TTG
79632 TGTGATGCTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.13, C:0.17, G:0.15, T:0.55
Consensus pattern (22 bp):
TTGGATATTTTTATCTTGCTCC
Found at i:81441 original size:21 final size:21
Alignment explanation
Indices: 81412--81456 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
81402 AAGTTTTTAT
*
81412 TTTTCTTAGCTAAC-TCATTA
1 TTTTCTTAGCCAACGTCATTA
*
81432 TTTTCATTAGCCAACGTCTTTA
1 TTTTC-TTAGCCAACGTCATTA
81454 TTT
1 TTT
81457 CAACTTGCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 8 0.38
22 8 0.38
ACGTcount: A:0.22, C:0.20, G:0.07, T:0.51
Consensus pattern (21 bp):
TTTTCTTAGCCAACGTCATTA
Found at i:83349 original size:244 final size:242
Alignment explanation
Indices: 82916--83399 Score: 914
Period size: 244 Copynumber: 2.0 Consensus size: 242
82906 ATACCAATTG
*
82916 AAAGCTTATCAAGTAACGAACCAAGAGGGGGGGTGAATTGGTTCTTTTCGAATTTTTGGTTTTGA
1 AAAGCTTATCAAGTAACGAACCAAGAGGGGGGGTGAATTGGTTCTTTTCGAATTTTGGGTTTTGA
82981 AACAACACAATTCGAAATGAAAAGAGATTAGGGAAGGAAAACTTGACACAAGATATTTATAGAGG
66 AACAACACAATTCGAAATGAAAAGAGATTAGGGAAGGAAAACTTGACACAAGATATTTATAGAGG
83046 TTCGGTCCAAACACGGCACCTACGTCCTCTCTCCTCGACACTTCCTCGTCGAGTGATTACCCAAT
131 TTCGGTCCAAACACGGCACCTACGTCCTCTCTCCTCGACACTTCCTCGTCGAGTGATTACCCAAT
83111 TCACTAACCGAATTGATTACCTTTAAGGCAAAGGTATAACCTTACTA
196 TCACTAACCGAATTGATTACCTTTAAGGCAAAGGTATAACCTTACTA
*
83158 AAAGCTTTATCAAGTAATGAACCAAGAGGGGGGGTGAATTGGTTCTTTTCGAATTTTCGGGTTTT
1 AAAGC-TTATCAAGTAACGAACCAAGAGGGGGGGTGAATTGGTTCTTTTCGAATTTT-GGGTTTT
*
83223 GAAACAACATAATTCGAAATGAAAAGAGATTAGGGAAGGAAAACTTGACACAAGATATTTATAGA
64 GAAACAACACAATTCGAAATGAAAAGAGATTAGGGAAGGAAAACTTGACACAAGATATTTATAGA
*
83288 GGTTCGGTCCAAACACGGCACCTACGTCCTCTCTCCTCGACACTTCCTTGTCGAGTGATTACCCA
129 GGTTCGGTCCAAACACGGCACCTACGTCCTCTCTCCTCGACACTTCCTCGTCGAGTGATTACCCA
83353 ATTCACTAACCGAATTGATTACCTTTAAGGCAAAGGTATAACCTTAC
194 ATTCACTAACCGAATTGATTACCTTTAAGGCAAAGGTATAACCTTAC
83400 AACTCGTATC
Statistics
Matches: 236, Mismatches: 4, Indels: 2
0.98 0.02 0.01
Matches are distributed among these distances:
242 5 0.02
243 50 0.21
244 181 0.77
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.27
Consensus pattern (242 bp):
AAAGCTTATCAAGTAACGAACCAAGAGGGGGGGTGAATTGGTTCTTTTCGAATTTTGGGTTTTGA
AACAACACAATTCGAAATGAAAAGAGATTAGGGAAGGAAAACTTGACACAAGATATTTATAGAGG
TTCGGTCCAAACACGGCACCTACGTCCTCTCTCCTCGACACTTCCTCGTCGAGTGATTACCCAAT
TCACTAACCGAATTGATTACCTTTAAGGCAAAGGTATAACCTTACTA
Found at i:83618 original size:32 final size:30
Alignment explanation
Indices: 83582--83640 Score: 75
Period size: 32 Copynumber: 1.9 Consensus size: 30
83572 GAAATCAAAT
83582 ACAAAGAGCT-TAGAAAAATAATAACAATATGA
1 ACAAA-AGCTCTAGAAAAAT-ATAA-AATATGA
*
83614 ACAAAAGCTCTTGAAAAATATAAAATA
1 ACAAAAGCTCTAGAAAAATATAAAATA
83641 CTTTGATCTA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
30 4 0.16
31 8 0.32
32 13 0.52
ACGTcount: A:0.59, C:0.10, G:0.10, T:0.20
Consensus pattern (30 bp):
ACAAAAGCTCTAGAAAAATATAAAATATGA
Found at i:83889 original size:10 final size:10
Alignment explanation
Indices: 83874--83908 Score: 61
Period size: 10 Copynumber: 3.5 Consensus size: 10
83864 TTGAAAAATA
83874 TAGCCGTTAC
1 TAGCCGTTAC
83884 TAGCCGTTAC
1 TAGCCGTTAC
83894 TAGCCGTTAC
1 TAGCCGTTAC
*
83904 AAGCC
1 TAGCC
83909 AATGTATTGA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
10 24 1.00
ACGTcount: A:0.23, C:0.31, G:0.20, T:0.26
Consensus pattern (10 bp):
TAGCCGTTAC
Found at i:86498 original size:13 final size:13
Alignment explanation
Indices: 86480--86504 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
86470 ATAATCCCCC
86480 TGTATCGATACAT
1 TGTATCGATACAT
86493 TGTATCGATACA
1 TGTATCGATACA
86505 AAGAAAAATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:88605 original size:15 final size:15
Alignment explanation
Indices: 88580--88615 Score: 54
Period size: 15 Copynumber: 2.3 Consensus size: 15
88570 CATCAATTTC
*
88580 TTTTGGAGCTTCTTCA
1 TTTT-GAGCTTCCTCA
88596 TTTTGAGCTTCCTCA
1 TTTTGAGCTTCCTCA
88611 TTTTG
1 TTTTG
88616 GACATTTTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 15 0.79
16 4 0.21
ACGTcount: A:0.11, C:0.19, G:0.17, T:0.53
Consensus pattern (15 bp):
TTTTGAGCTTCCTCA
Found at i:92347 original size:32 final size:30
Alignment explanation
Indices: 92311--92369 Score: 75
Period size: 32 Copynumber: 1.9 Consensus size: 30
92301 AAAATCAAAT
92311 ACAAAGAGCT-TAGAAAAATAATAACAATATGA
1 ACAAA-AGCTCTAGAAAAAT-ATAA-AATATGA
*
92343 ACAAAAGCTCTTGAAAAATATAAAATA
1 ACAAAAGCTCTAGAAAAATATAAAATA
92370 CTTTGGTCTA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
30 4 0.16
31 8 0.32
32 13 0.52
ACGTcount: A:0.59, C:0.10, G:0.10, T:0.20
Consensus pattern (30 bp):
ACAAAAGCTCTAGAAAAATATAAAATATGA
Found at i:92668 original size:13 final size:13
Alignment explanation
Indices: 92650--92675 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
92640 CAATTTTTTG
92650 TGTATCGATACAT
1 TGTATCGATACAT
92663 TGTATCGATACAT
1 TGTATCGATACAT
92676 ACTTGGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:92690 original size:32 final size:33
Alignment explanation
Indices: 92630--92693 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 33
92620 TACAAGCCAA
** *
92630 TGTATCGATACAATTTTTTGTGTATCGATACAT
1 TGTATCGATACAATACTTGGTGTATCGATACAT
92663 TGTATCGATAC-ATACTTGGTGTATCGATACA
1 TGTATCGATACAATACTTGGTGTATCGATACA
92694 AGTTTGGCTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 17 0.61
33 11 0.39
ACGTcount: A:0.28, C:0.14, G:0.17, T:0.41
Consensus pattern (33 bp):
TGTATCGATACAATACTTGGTGTATCGATACAT
Found at i:93293 original size:32 final size:30
Alignment explanation
Indices: 93257--93315 Score: 75
Period size: 32 Copynumber: 1.9 Consensus size: 30
93247 GAAATCAAAT
93257 ACAAAGAGCT-TAGAAAAATAATAACAATATGA
1 ACAAA-AGCTCTAGAAAAAT-ATAA-AATATGA
*
93289 ACAAAAGCTCTTGAAAAATATAAAATA
1 ACAAAAGCTCTAGAAAAATATAAAATA
93316 CTTTGATCTA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
30 4 0.16
31 8 0.32
32 13 0.52
ACGTcount: A:0.59, C:0.10, G:0.10, T:0.20
Consensus pattern (30 bp):
ACAAAAGCTCTAGAAAAATATAAAATATGA
Found at i:93614 original size:13 final size:13
Alignment explanation
Indices: 93596--93621 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
93586 ATATTTTTTG
93596 TGTATCGATACAT
1 TGTATCGATACAT
93609 TGTATCGATACAT
1 TGTATCGATACAT
93622 ATTTTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:93632 original size:32 final size:33
Alignment explanation
Indices: 93575--93639 Score: 114
Period size: 32 Copynumber: 2.0 Consensus size: 33
93565 TACAAGCCAA
93575 TGTATCGATACATATTTTTTGTGTATCGATACAT
1 TGTATCGATACATA-TTTTTGTGTATCGATACAT
93609 TGTATCGATACATA-TTTTGTGTATCGATACA
1 TGTATCGATACATATTTTTGTGTATCGATACA
93640 AGTTTGGCTA
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
32 17 0.55
34 14 0.45
ACGTcount: A:0.28, C:0.12, G:0.15, T:0.45
Consensus pattern (33 bp):
TGTATCGATACATATTTTTGTGTATCGATACAT
Found at i:93633 original size:19 final size:19
Alignment explanation
Indices: 93575--93639 Score: 70
Period size: 19 Copynumber: 3.6 Consensus size: 19
93565 TACAAGCCAA
93575 TGTATCGATACATATTTTTTG
1 TGTATCGATACATA--TTTTG
93596 TGTATCGATAC--A---T-
1 TGTATCGATACATATTTTG
93609 TGTATCGATACATATTTTG
1 TGTATCGATACATATTTTG
93628 TGTATCGATACA
1 TGTATCGATACA
93640 AGTTTGGCTA
Statistics
Matches: 38, Mismatches: 0, Indels: 14
0.73 0.00 0.27
Matches are distributed among these distances:
13 11 0.29
14 1 0.03
15 1 0.03
18 1 0.03
19 13 0.34
21 11 0.29
ACGTcount: A:0.28, C:0.12, G:0.15, T:0.45
Consensus pattern (19 bp):
TGTATCGATACATATTTTG
Found at i:93959 original size:946 final size:945
Alignment explanation
Indices: 92120--94014 Score: 3481
Period size: 946 Copynumber: 2.0 Consensus size: 945
92110 GGCAAAGGTA
*
92120 TAAC-CTTACAACTCGTATCTTTTACGTGCTTAGATACCAACCTTACAATCTCTTTGCAAACTAT
1 TAACACTTACAACTCGTATCTTTTACGGGCTTAGATACCAACCTTACAATCTCTTTGCAAACTAT
92184 ACCACAAGTTCCAAAGAGATTCTCTCTCAAGGTTTACCACAACCTTATGACAACAAGGATTTTTC
66 ACCACAAGTTCCAAAGAGATTCTCTCTCAAGGTTTACCACAACCTTATGACAACAAGGATTTTTC
* *
92249 TACAAACAAAGTTTTCCTCTAACTAGGCTTGTGTTTGTGGGAATTTAAGCTCAAAATCAAATACA
131 TACAAACAAAGTTTGCCTCTAACTAGGCTTGTGTTTGTGAGAATTTAAGCTCAAAATCAAATACA
*
92314 AAGAGCTTAGAAAAATAATAACAATATGAACAAAAGCTCTTGAAAAATATAAAATACTTTGGTCT
196 AAGAGCTTAGAAAAATAATAACAATATGAACAAAAGCTCTTGAAAAATATAAAATACTTTGATCT
* *
92379 AAGAAAACTTTGAATGCTAGATGTTTCTTGCTTGGTTCTACTTCTTTCTTCTTGTGTTTTGCAGC
261 AAGAAAACTTTGAATGCTAGATGTTGCTTGCTTGGTTCTACTTCTCTCTTCTTGTGTTTTGCAGC
* * *
92444 TGGAAGCTCTTATTTATAGGCTTGAATGTTGTTGTAGTCGTTGGAGTTTGATTGGTGGAGTTTCT
326 TGGAAGCTCTTATTTATAGGCTTCAATGTTGTTGTAGCCGTTGGAGTTTGATTAGTGGAGTTTCT
92509 AGCCGTTATTGGCTTGTTTGGAGCTTATTTTAATGATTTCCCGTGTGAATGTATCGATACAATTT
391 AGCCGTTATTGGCTTGTTTGGAGCTTATTTTAATGATTTCCCGTGTGAATGTATCGATACAATTT
92574 TTGATGTATCGATACATATTTGAAAAATATAGCCGTTACTAGCCGTTACAAGCCAATGTATCGAT
456 TTGATGTATCGATACATATTTGAAAAATATAGCCGTTACTAGCCGTTACAAGCCAATGTATCGAT
92639 ACAATTTTTTGTGTATCGATACATTGTATCGATACATACTTGGTGTATCGATACAAGTTTGGCTA
521 ACAATTTTTTGTGTATCGATACATTGTATCGATACATACTTGGTGTATCGATACAAGTTTGGCTA
92704 CTGCCAAGAATTCCCAATGACATGTATCGATACATCTTTTTCATGTATCGATACATTGCAACATG
586 CTGCCAAGAATTCCCAATGACATGTATCGATACATCTTTTTCATGTATCGATACATTGCAACATG
*
92769 TATCGATACTTTGAATTGTGTATCGCTACTTTTAAGGGTTTTGACAATTTTAGCCTAAGTCAACC
651 TATCGATACTTTGAATTGTGTATCGATACTTTTAAGGGTTTTGACAATTTTAGCCTAAGTCAACC
*
92834 TTAATGTATCGATACAAATACCTATGTATCGATACTTTGATATATTTTAACTTAAAAAGCAATCA
716 TTAATGTATCGATACAAATACCTATGTATCGATACTTTGATATAATTTAACTTAAAAAGCAATCA
92899 TTTTAAGCCTTGAAAACATTTGTAATCAACTAGAAAACATTTGGTGAATCAAAAATCATTTGGTA
781 TTTTAAGCCTTGAAAACATTTGTAATCAACTAGAAAACATTTGGTGAATCAAAAATCATTTGGTA
* *
92964 CAAAATTTATTAAGTACTTAATTGAATAAAACATATTTTTCGTATTTTCAAAAATAATTTCCGGT
846 AAAAATTTATTAAGTACTTAATTGAATAAAACATATTTTTCGCATTTTC-AAAATAATTTCCGGT
93029 TTTATTCAATCCTTTGTTATATCAAAACCAAGATCC
910 TTTATTCAATCCTTTGTTATATCAAAACCAAGATCC
93065 TAACACTTACAACTCGTATCTTTTACGGGCTTAGATACCAACCTTACAATCTCTTTGCAAACTAT
1 TAACACTTACAACTCGTATCTTTTACGGGCTTAGATACCAACCTTACAATCTCTTTGCAAACTAT
* *
93130 ACCACAAGTTCCAAAGATATTCTCTCTCAAGGTTTACCACAGCCTTATGACAACAAGGATTTTTC
66 ACCACAAGTTCCAAAGAGATTCTCTCTCAAGGTTTACCACAACCTTATGACAACAAGGATTTTTC
*
93195 TACAAACAAAGTTTGCCTCTAACTAGGCTTGTGTTTGTGAGAATTTAAGCTCGAAATCAAATACA
131 TACAAACAAAGTTTGCCTCTAACTAGGCTTGTGTTTGTGAGAATTTAAGCTCAAAATCAAATACA
93260 AAGAGCTTAGAAAAATAATAACAATATGAACAAAAGCTCTTGAAAAATATAAAATACTTTGATCT
196 AAGAGCTTAGAAAAATAATAACAATATGAACAAAAGCTCTTGAAAAATATAAAATACTTTGATCT
*
93325 AAGAAAACTTTGAATGCTAGATGTTGCTTGCTTGGTTCTACTTCTCTCTTCTTGTGTTTTGCTGC
261 AAGAAAACTTTGAATGCTAGATGTTGCTTGCTTGGTTCTACTTCTCTCTTCTTGTGTTTTGCAGC
93390 TGGAAGCTCTTATTTATAGGCTTCAATGTTGTTGTAGCCGTTGGAGTTTGATTAGTGGAGTTTCT
326 TGGAAGCTCTTATTTATAGGCTTCAATGTTGTTGTAGCCGTTGGAGTTTGATTAGTGGAGTTTCT
*
93455 AGCCGTTATTGGCTTGTTTGGAGTTTATTTTAATGATTTCCCGTGTGAATGTATCGATACAATTT
391 AGCCGTTATTGGCTTGTTTGGAGCTTATTTTAATGATTTCCCGTGTGAATGTATCGATACAATTT
*
93520 TTGATGTATCGATACATATTTG-AAAATATAGCCGTTTCTAGCCGTTACAAGCCAATGTATCGAT
456 TTGATGTATCGATACATATTTGAAAAATATAGCCGTTACTAGCCGTTACAAGCCAATGTATCGAT
* *
93584 ACATATTTTTTGTGTATCGATACATTGTATCGATACATATTTTGTGTATCGATACAAGTTTGGCT
521 ACA-ATTTTTTGTGTATCGATACATTGTATCGATACATACTTGGTGTATCGATACAAGTTTGGCT
*
93649 ACTGCCAAGAAATT-CCAATGTCATGTATCGATACATCTTTTTCATGTATCGATACATTGCAACA
585 ACTGCCAAG-AATTCCCAATGACATGTATCGATACATCTTTTTCATGTATCGATACATTGCAACA
*
93713 TGTATCGATACTTTGAATTGTGTATCGATACTTTTAAGGGTTTTGACAATTTTATCCTAAGTCAA
649 TGTATCGATACTTTGAATTGTGTATCGATACTTTTAAGGGTTTTGACAATTTTAGCCTAAGTCAA
* *
93778 CCTTAATGTATCGATACAAATACCTATGTATCGATACTTTGATATAATTTATCTTAAAAATCAAT
714 CCTTAATGTATCGATACAAATACCTATGTATCGATACTTTGATATAATTTAACTTAAAAAGCAAT
* * *
93843 CATTTTAAGCCTTGAAAACATTTGTACTTAACTAGAAAATATTTGGTGAATCAAAAATCATTTGG
779 CATTTTAAGCCTTGAAAACATTTGTAATCAACTAGAAAACATTTGGTGAATCAAAAATCATTTGG
*
93908 TAAAAAATTTATTAAGTACTTAATTGAATAAAACATATTTTTGGCATTTTCAAAATAATTTCCGG
844 TAAAAAATTTATTAAGTACTTAATTGAATAAAACATATTTTTCGCATTTTCAAAATAATTTCCGG
93973 TTTTATTCAATCCTTTGTTATATCAAAACCAAGATCC
909 TTTTATTCAATCCTTTGTTATATCAAAACCAAGATCC
94010 TAACA
1 TAACA
94015 AAGTCCAATG
Statistics
Matches: 918, Mismatches: 29, Indels: 6
0.96 0.03 0.01
Matches are distributed among these distances:
945 104 0.11
946 810 0.88
947 4 0.00
ACGTcount: A:0.32, C:0.16, G:0.15, T:0.37
Consensus pattern (945 bp):
TAACACTTACAACTCGTATCTTTTACGGGCTTAGATACCAACCTTACAATCTCTTTGCAAACTAT
ACCACAAGTTCCAAAGAGATTCTCTCTCAAGGTTTACCACAACCTTATGACAACAAGGATTTTTC
TACAAACAAAGTTTGCCTCTAACTAGGCTTGTGTTTGTGAGAATTTAAGCTCAAAATCAAATACA
AAGAGCTTAGAAAAATAATAACAATATGAACAAAAGCTCTTGAAAAATATAAAATACTTTGATCT
AAGAAAACTTTGAATGCTAGATGTTGCTTGCTTGGTTCTACTTCTCTCTTCTTGTGTTTTGCAGC
TGGAAGCTCTTATTTATAGGCTTCAATGTTGTTGTAGCCGTTGGAGTTTGATTAGTGGAGTTTCT
AGCCGTTATTGGCTTGTTTGGAGCTTATTTTAATGATTTCCCGTGTGAATGTATCGATACAATTT
TTGATGTATCGATACATATTTGAAAAATATAGCCGTTACTAGCCGTTACAAGCCAATGTATCGAT
ACAATTTTTTGTGTATCGATACATTGTATCGATACATACTTGGTGTATCGATACAAGTTTGGCTA
CTGCCAAGAATTCCCAATGACATGTATCGATACATCTTTTTCATGTATCGATACATTGCAACATG
TATCGATACTTTGAATTGTGTATCGATACTTTTAAGGGTTTTGACAATTTTAGCCTAAGTCAACC
TTAATGTATCGATACAAATACCTATGTATCGATACTTTGATATAATTTAACTTAAAAAGCAATCA
TTTTAAGCCTTGAAAACATTTGTAATCAACTAGAAAACATTTGGTGAATCAAAAATCATTTGGTA
AAAAATTTATTAAGTACTTAATTGAATAAAACATATTTTTCGCATTTTCAAAATAATTTCCGGTT
TTATTCAATCCTTTGTTATATCAAAACCAAGATCC
Found at i:94088 original size:49 final size:49
Alignment explanation
Indices: 94015--94348 Score: 328
Period size: 49 Copynumber: 6.7 Consensus size: 49
94005 GATCCTAACA
* * *
94015 AAGTCCAATGTCGCTGGCCATGAATAAGCACATTGGCACCTTCATCTTT
1 AAGTCCAATGTCGCTGACCTTGAATCAGCACATTGGCACCTTCATCTTT
* * *
94064 AAGTCCAATATCGCTGACCTTGAATCAGCATATTGGCACCTTTATCTTT
1 AAGTCCAATGTCGCTGACCTTGAATCAGCACATTGGCACCTTCATCTTT
94113 AAGTCCAATGTCGCTGACCTTGAATCAGCACATTGGCACCTTCATCTTT
1 AAGTCCAATGTCGCTGACCTTGAATCAGCACATTGGCACCTTCATCTTT
* ** * ** * *
94162 AAGACCGGTATCGCTGACCTTGAATCAATACATCGGCACCTCAACCATCTTT
1 AAGTCCAATGTCGCTGACCTTGAATCAGCACATTGGCACCT---TCATCTTT
* * ** * * *
94214 AAGCCCAATATCGCTGGTCTTGAATCAGCATATTGGCA-CGTCATCTTC
1 AAGTCCAATGTCGCTGACCTTGAATCAGCACATTGGCACCTTCATCTTT
* * * * * * * *
94262 AAGTCTAATGTCGCTGACCGTGAATTAGTACATTGTCATTCTTTTTATCTTC
1 AAGTCCAATGTCGCTGACCTTGAATCAGCACATTGGCA--C-CTTCATCTTT
* *
94314 AAGTCTAATGTCGCTGACCATGAATCAGCACATTG
1 AAGTCCAATGTCGCTGACCTTGAATCAGCACATTG
94349 ACATCCTTTT
Statistics
Matches: 233, Mismatches: 45, Indels: 11
0.81 0.16 0.04
Matches are distributed among these distances:
48 34 0.15
49 123 0.53
51 1 0.00
52 75 0.32
ACGTcount: A:0.26, C:0.26, G:0.17, T:0.31
Consensus pattern (49 bp):
AAGTCCAATGTCGCTGACCTTGAATCAGCACATTGGCACCTTCATCTTT
Found at i:94318 original size:52 final size:52
Alignment explanation
Indices: 94256--94359 Score: 163
Period size: 52 Copynumber: 2.0 Consensus size: 52
94246 TTGGCACGTC
* * * * *
94256 ATCTTCAAGTCTAATGTCGCTGACCGTGAATTAGTACATTGTCATTCTTTTT
1 ATCTTCAAGTCTAATGTCGCTGACCATGAATCAGCACATTGACATCCTTTTT
94308 ATCTTCAAGTCTAATGTCGCTGACCATGAATCAGCACATTGACATCCTTTTT
1 ATCTTCAAGTCTAATGTCGCTGACCATGAATCAGCACATTGACATCCTTTTT
94360 CTCATCTTTA
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
52 47 1.00
ACGTcount: A:0.25, C:0.22, G:0.14, T:0.38
Consensus pattern (52 bp):
ATCTTCAAGTCTAATGTCGCTGACCATGAATCAGCACATTGACATCCTTTTT
Found at i:95038 original size:19 final size:19
Alignment explanation
Indices: 95014--95062 Score: 89
Period size: 19 Copynumber: 2.6 Consensus size: 19
95004 TTTCAACGAT
95014 TTGTATCGATACATAAGTG
1 TTGTATCGATACATAAGTG
*
95033 TTGTATCGATACATAAGTT
1 TTGTATCGATACATAAGTG
95052 TTGTATCGATA
1 TTGTATCGATA
95063 TATTGTATTG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.31, C:0.10, G:0.18, T:0.41
Consensus pattern (19 bp):
TTGTATCGATACATAAGTG
Found at i:95093 original size:33 final size:32
Alignment explanation
Indices: 95033--95095 Score: 92
Period size: 33 Copynumber: 1.9 Consensus size: 32
95023 TACATAAGTG
95033 TTGTATCGATACATAAGTTTTGTATCGATATA
1 TTGTATCGATACATAAGTTTTGTATCGATATA
*
95065 TTGTATTGATACACTAA-TCTTTGTATCGATA
1 TTGTATCGATACA-TAAGT-TTTGTATCGATA
95096 CATGCAGGCA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
32 13 0.46
33 15 0.54
ACGTcount: A:0.30, C:0.11, G:0.14, T:0.44
Consensus pattern (32 bp):
TTGTATCGATACATAAGTTTTGTATCGATATA
Found at i:95122 original size:52 final size:52
Alignment explanation
Indices: 95086--95214 Score: 222
Period size: 52 Copynumber: 2.5 Consensus size: 52
95076 CACTAATCTT
*
95086 TGTATCGATACATGCAGGCAAATTTGCCTAGATGTATCGATACACTATGAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATGAAA
* *
95138 TGTATTGATACATACAGGCAAATTTGCCCAGATGTATCGATACACTATGAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATGAAA
*
95190 TGTATCGATATATGCAGGCAAATTT
1 TGTATCGATACATGCAGGCAAATTT
95215 TCATATTTTG
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
52 71 1.00
ACGTcount: A:0.35, C:0.16, G:0.19, T:0.30
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATGAAA
Found at i:99943 original size:20 final size:23
Alignment explanation
Indices: 99918--99964 Score: 66
Period size: 22 Copynumber: 2.2 Consensus size: 23
99908 TTCTGTTGAT
99918 GATTTTG-A-TGAAAAA-TGAAA
1 GATTTTGAAGTGAAAAAGTGAAA
99938 GATTTTGAAGTGAAAAAGTGAAA
1 GATTTTGAAGTGAAAAAGTGAAA
99961 -ATTT
1 GATTT
99965 GTGGAAAATT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
20 7 0.29
21 1 0.04
22 11 0.46
23 5 0.21
ACGTcount: A:0.47, C:0.00, G:0.21, T:0.32
Consensus pattern (23 bp):
GATTTTGAAGTGAAAAAGTGAAA
Found at i:101689 original size:33 final size:33
Alignment explanation
Indices: 101652--101718 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
101642 TTCAACGATT
101652 TGTATCGATACATAAAATGTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
*** *
101685 TGTATCGATACATATTTTTTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
101718 T
1 T
101719 TTAAGCTACT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.34, C:0.12, G:0.13, T:0.40
Consensus pattern (33 bp):
TGTATCGATACATAAAATGTTGTATCGATACAA
Found at i:101690 original size:13 final size:13
Alignment explanation
Indices: 101672--101696 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
101662 CATAAAATGT
101672 TGTATCGATACAA
1 TGTATCGATACAA
101685 TGTATCGATACA
1 TGTATCGATACA
101697 TATTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:101742 original size:33 final size:33
Alignment explanation
Indices: 101705--101816 Score: 115
Period size: 33 Copynumber: 3.4 Consensus size: 33
101695 CATATTTTTT
101705 TGTATCGATACAATTTAAGCTACTGCCAAAAAA
1 TGTATCGATACAATTTAAGCTACTGCCAAAAAA
* * * *
101738 TGTATCGATAC-ATTACTCAAATG-TA-T-CGATACAT
1 TGTATCGATACAATT--T--AA-GCTACTGCCAAAAAA
101772 TGTATCGATACAATTTAAGCTACTGCCAAAAAA
1 TGTATCGATACAATTTAAGCTACTGCCAAAAAA
101805 TGTATCGATACA
1 TGTATCGATACA
101817 TTACTCAAAT
Statistics
Matches: 62, Mismatches: 8, Indels: 18
0.70 0.09 0.20
Matches are distributed among these distances:
30 1 0.02
31 4 0.06
32 4 0.06
33 28 0.45
34 16 0.26
35 4 0.06
36 4 0.06
37 1 0.02
ACGTcount: A:0.39, C:0.18, G:0.12, T:0.30
Consensus pattern (33 bp):
TGTATCGATACAATTTAAGCTACTGCCAAAAAA
Found at i:101777 original size:13 final size:13
Alignment explanation
Indices: 101759--101783 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
101749 ATTACTCAAA
101759 TGTATCGATACAT
1 TGTATCGATACAT
101772 TGTATCGATACA
1 TGTATCGATACA
101784 ATTTAAGCTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:101782 original size:67 final size:67
Alignment explanation
Indices: 101704--101850 Score: 294
Period size: 67 Copynumber: 2.2 Consensus size: 67
101694 ACATATTTTT
101704 TTGTATCGATACAATTTAAGCTACTGCCAAAAAATGTATCGATACATTACTCAAATGTATCGATA
1 TTGTATCGATACAATTTAAGCTACTGCCAAAAAATGTATCGATACATTACTCAAATGTATCGATA
101769 CA
66 CA
101771 TTGTATCGATACAATTTAAGCTACTGCCAAAAAATGTATCGATACATTACTCAAATGTATCGATA
1 TTGTATCGATACAATTTAAGCTACTGCCAAAAAATGTATCGATACATTACTCAAATGTATCGATA
101836 CA
66 CA
101838 TTGTATCGATACA
1 TTGTATCGATACA
101851 CTGATCTTTG
Statistics
Matches: 80, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
67 80 1.00
ACGTcount: A:0.38, C:0.18, G:0.12, T:0.32
Consensus pattern (67 bp):
TTGTATCGATACAATTTAAGCTACTGCCAAAAAATGTATCGATACATTACTCAAATGTATCGATA
CA
Found at i:101844 original size:13 final size:13
Alignment explanation
Indices: 101826--101850 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
101816 ATTACTCAAA
101826 TGTATCGATACAT
1 TGTATCGATACAT
101839 TGTATCGATACA
1 TGTATCGATACA
101851 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:101952 original size:52 final size:52
Alignment explanation
Indices: 101859--101986 Score: 249
Period size: 52 Copynumber: 2.5 Consensus size: 52
101849 CACTGATCTT
101859 TGTATCGATACATGCAGGC-AATTTGCCCAGATGTATCGATACATTATTAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACATTATTAAA
101910 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACATTATTAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACATTATTAAA
101962 TGTATCGATACATGCAGGCAAATTT
1 TGTATCGATACATGCAGGCAAATTT
101987 TCATATTTCG
Statistics
Matches: 76, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
51 19 0.25
52 57 0.75
ACGTcount: A:0.34, C:0.17, G:0.18, T:0.31
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACATTATTAAA
Found at i:105159 original size:33 final size:33
Alignment explanation
Indices: 105122--105188 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
105112 TTCAACGATT
105122 TGTATCGATACATAAAATGTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
*** *
105155 TGTATCGATACATATTTTTTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
105188 T
1 T
105189 TTAAGCTACT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.34, C:0.12, G:0.13, T:0.40
Consensus pattern (33 bp):
TGTATCGATACATAAAATGTTGTATCGATACAA
Found at i:105160 original size:13 final size:13
Alignment explanation
Indices: 105142--105166 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
105132 CATAAAATGT
105142 TGTATCGATACAA
1 TGTATCGATACAA
105155 TGTATCGATACA
1 TGTATCGATACA
105167 TATTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:105247 original size:13 final size:13
Alignment explanation
Indices: 105229--105253 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
105219 ATTACTCAAA
105229 TGTATCGATACAT
1 TGTATCGATACAT
105242 TGTATCGATACA
1 TGTATCGATACA
105254 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Done.