Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold313
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 790584
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
File 3 of 6
Found at i:240651 original size:34 final size:35
Alignment explanation
Indices: 240468--240702 Score: 293
Period size: 34 Copynumber: 6.8 Consensus size: 35
240458 GCAACCTTCA
*
240468 AAAGTCCACAACTCTGTGGCAC-CTTTTTCCTTCTT
1 AAAGCCCACAACTCTGTGGCACTCTTTTTCCTT-TT
* * *
240503 AAAGCCCATAACTTTGTGGCACTC-TTTTCCTTCT
1 AAAGCCCACAACTCTGTGGCACTCTTTTTCCTTTT
* *
240537 -AAGTCCACAACTCTGTGGCAC-CTTTCTTCTTTTT
1 AAAGCCCACAACTCTGTGGCACTCTTT-TTCCTTTT
240571 AAAGCCCACAACTCTGTGGCACTCTTTTTCCTTTTT
1 AAAGCCCACAACTCTGTGGCACTCTTTTTCC-TTTT
*
240607 AAAGCCCACAACACTGTGGCACTCTTTTTCCTTTT
1 AAAGCCCACAACTCTGTGGCACTCTTTTTCCTTTT
* *
240642 -AAGCCCACAACTCCGTGGCACTCTTTTTTCTTTT
1 AAAGCCCACAACTCTGTGGCACTCTTTTTCCTTTT
* * *
240676 -AAGTCCACAACTCCGTGGCACCCTTTT
1 AAAGCCCACAACTCTGTGGCACTCTTTT
240703 AAGCCCACAA
Statistics
Matches: 177, Mismatches: 17, Indels: 13
0.86 0.08 0.06
Matches are distributed among these distances:
32 1 0.01
33 20 0.11
34 63 0.36
35 54 0.31
36 39 0.22
ACGTcount: A:0.20, C:0.31, G:0.12, T:0.37
Consensus pattern (35 bp):
AAAGCCCACAACTCTGTGGCACTCTTTTTCCTTTT
Found at i:240667 original size:27 final size:28
Alignment explanation
Indices: 240636--240750 Score: 97
Period size: 34 Copynumber: 3.9 Consensus size: 28
240626 CACTCTTTTT
240636 CCTTTTAAGCCCACAACTCCGTGGCACTC
1 CCTTTTAAGCCCACAACTCCGTGGCAC-C
* *
240665 TTTTTTCTTTTAAGTCCACAACTCCGTGGCA-C
1 -----CCTTTTAAGCCCACAACTCCGTGGCACC
* *
240697 CCTTTTAAGCCCACAAGTCGGTGGCACC
1 CCTTTTAAGCCCACAACTCCGTGGCACC
* * *
240725 CCTTTCAAAGCCCACAAGTCAGTGGC
1 CCTTT-TAAGCCCACAACTCCGTGGC
240751 TACCTTCAAA
Statistics
Matches: 71, Mismatches: 8, Indels: 9
0.81 0.09 0.10
Matches are distributed among these distances:
27 22 0.31
28 6 0.08
29 18 0.25
32 1 0.01
34 24 0.34
ACGTcount: A:0.22, C:0.35, G:0.17, T:0.27
Consensus pattern (28 bp):
CCTTTTAAGCCCACAACTCCGTGGCACC
Found at i:240740 original size:29 final size:29
Alignment explanation
Indices: 240680--240797 Score: 104
Period size: 29 Copynumber: 4.2 Consensus size: 29
240670 TCTTTTAAGT
* * *
240680 CCACAACTCCGTGGCACCCTTT--TAAGC
1 CCACAAGTCGGTGGCACCCTTTCAAAAGC
240707 CCACAAGTCGGTGGCACCCCTTTC-AAAGC
1 CCACAAGTCGGTGGCA-CCCTTTCAAAAGC
*
240736 CCACAAGTCAGTGGCTA-CC-TTCAAAAGC
1 CCACAAGTCGGTGGC-ACCCTTTCAAAAGC
* * *
240764 ACACAAGTTGAT-GCAACCCTTTCAAAAGC
1 CCACAAGTCGGTGGC-ACCCTTTCAAAAGC
240793 CCACA
1 CCACA
240798 CAAGTTGATG
Statistics
Matches: 75, Mismatches: 10, Indels: 10
0.79 0.11 0.11
Matches are distributed among these distances:
27 20 0.27
28 23 0.31
29 31 0.41
30 1 0.01
ACGTcount: A:0.30, C:0.36, G:0.16, T:0.19
Consensus pattern (29 bp):
CCACAAGTCGGTGGCACCCTTTCAAAAGC
Found at i:241971 original size:13 final size:13
Alignment explanation
Indices: 241953--242004 Score: 61
Period size: 13 Copynumber: 4.1 Consensus size: 13
241943 TTTCAACAAT
241953 TTGTATCGATACA
1 TTGTATCGATACA
241966 TTGTATCGATACA
1 TTGTATCGATACA
***
241979 -AAAATCGATACA
1 TTGTATCGATACA
*
241991 ATGTATCGATACA
1 TTGTATCGATACA
242004 T
1 T
242005 AAGTTTTGTA
Statistics
Matches: 31, Mismatches: 7, Indels: 2
0.77 0.17 0.05
Matches are distributed among these distances:
12 9 0.29
13 22 0.71
ACGTcount: A:0.38, C:0.15, G:0.13, T:0.33
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:242016 original size:19 final size:19
Alignment explanation
Indices: 241992--242050 Score: 67
Period size: 19 Copynumber: 3.4 Consensus size: 19
241982 ATCGATACAA
241992 TGTATCGATACATAAGTTT
1 TGTATCGATACATAAGTTT
*
242011 TGTATCGGTAC--AA----
1 TGTATCGATACATAAGTTT
242024 TGTATCGATACATAAGTTT
1 TGTATCGATACATAAGTTT
242043 TGTATCGA
1 TGTATCGA
242051 CACAATGTAT
Statistics
Matches: 32, Mismatches: 2, Indels: 12
0.70 0.04 0.26
Matches are distributed among these distances:
13 10 0.31
15 2 0.06
17 2 0.06
19 18 0.56
ACGTcount: A:0.31, C:0.12, G:0.19, T:0.39
Consensus pattern (19 bp):
TGTATCGATACATAAGTTT
Found at i:242028 original size:32 final size:32
Alignment explanation
Indices: 241982--242067 Score: 145
Period size: 32 Copynumber: 2.7 Consensus size: 32
241972 CGATACAAAA
241982 ATCGATACAATGTATCGATACATAAGTTTTGT
1 ATCGATACAATGTATCGATACATAAGTTTTGT
*
242014 ATCGGTACAATGTATCGATACATAAGTTTTGT
1 ATCGATACAATGTATCGATACATAAGTTTTGT
* *
242046 ATCGACACAATGTATCGTTACA
1 ATCGATACAATGTATCGATACA
242068 AAGCTACTGC
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
32 50 1.00
ACGTcount: A:0.34, C:0.15, G:0.16, T:0.35
Consensus pattern (32 bp):
ATCGATACAATGTATCGATACATAAGTTTTGT
Found at i:245497 original size:79 final size:79
Alignment explanation
Indices: 245395--246115 Score: 665
Period size: 79 Copynumber: 9.2 Consensus size: 79
245385 TAAGAATGGG
* * * *
245395 GTTTTAAAAATAAAATCGAGGTTGGAGTATCCCCTCAAAAATAACTGGGTTAGAGTATCCTCGAT
1 GTTTTAGAAATAAAACCGGGGTTGGAGTATCCCCTCAAAAATAACAGGGTTAGAGTATCCTCGAT
245460 GGTGAAAAATCGAT
66 GGTGAAAAATCGAT
* * * * * * * **
245474 ATTTTAGAAATAAAATCGGGGTTGGAATATCCTCTCCAAAATAACACGGTTGGACCATTCC-CGA
1 GTTTTAGAAATAAAACCGGGGTTGGAGTATCCCCTCAAAAATAACAGGGTTAGAGTA-TCCTCGA
*
245538 TGGTGGAAAATC-AT
65 TGGTGAAAAATCGAT
* * * * * * * *
245552 GTTTTAGAAATAAAATCGAGGTTAGAGTATCCCCTCGAATATAGC-GAGGTTGGAGTATCCCCGA
1 GTTTTAGAAATAAAACCGGGGTTGGAGTATCCCCTCAAAAATAACAG-GGTTAGAGTATCCTCGA
245616 TGGTGAAAAATC-AT
65 TGGTGAAAAATCGAT
* * ** * *
245630 GTTTTAGAAATAAAACC-AGGTTGGGAGTGTCCCCTCTGAAATAAC-GAGATTGGAGTAT-CTCC
1 GTTTTAGAAATAAAACCGGGGTT-GGAGTATCCCCTCAAAAATAACAG-GGTTAGAGTATCCT-C
* *
245692 GATGGTCG-AAAATAGGT
63 GATGGT-GAAAAATCGAT
* * *
245709 GTTTTAGAAATAAAACCAGGGTTGGAGTATCCCCTCGAAAATAACAGGATTAGAGTATCC-CTGA
1 GTTTTAGAAATAAAACCGGGGTTGGAGTATCCCCTCAAAAATAACAGGGTTAGAGTATCCTC-GA
245773 TGGTGAAAAATCGAT
65 TGGTGAAAAATCGAT
* ** *
245788 GTTTTAGAAATAAAATCGGGGTTGGAGTATCCCCTCAAAAATAATGGGGTTAGAGTATGCTCGAT
1 GTTTTAGAAATAAAACCGGGGTTGGAGTATCCCCTCAAAAATAACAGGGTTAGAGTATCCTCGAT
245853 GGTGAAAAATC-AGT
66 GGTGAAAAATCGA-T
* * * * * *
245867 GTTTTACAAATAAAACCGAGGTTGAAGTATCCCCTCAGAAATAACGGGGTTAAAGTATCCT-GAT
1 GTTTTAGAAATAAAACCGGGGTTGGAGTATCCCCTCAAAAATAACAGGGTTAGAGTATCCTCGAT
*
245931 GGTGGAAAATCGAT
66 GGTGAAAAATCGAT
* * * * * * *
245945 GTTTTAGAAGTAAAACCAGGGTTGGAGTATCCTCTCGAAAATAACAAGGTTGGAGTATCCCCGAT
1 GTTTTAGAAATAAAACCGGGGTTGGAGTATCCCCTCAAAAATAACAGGGTTAGAGTATCCTCGAT
* *
246010 GGT-AGAAACTCGGT
66 GGTGA-AAAATCGAT
* * ** * * * * * * * *
246024 ATTTTAGAAATAAAACCAGGGTTAAAGTATCTCCTTAGAAATAACAAGATCAGAGTTTCCCCGAT
1 GTTTTAGAAATAAAACCGGGGTTGGAGTATCCCCTCAAAAATAACAGGGTTAGAGTATCCTCGAT
*
246089 GGTGGAAAATCGAT
66 GGTGAAAAATCGAT
* *
246103 ATTTTAGGAATAA
1 GTTTTAGAAATAA
246116 GAAAAACATT
Statistics
Matches: 533, Mismatches: 91, Indels: 36
0.81 0.14 0.05
Matches are distributed among these distances:
77 9 0.02
78 184 0.35
79 330 0.62
80 10 0.02
ACGTcount: A:0.35, C:0.15, G:0.23, T:0.27
Consensus pattern (79 bp):
GTTTTAGAAATAAAACCGGGGTTGGAGTATCCCCTCAAAAATAACAGGGTTAGAGTATCCTCGAT
GGTGAAAAATCGAT
Found at i:245580 original size:157 final size:156
Alignment explanation
Indices: 245395--246115 Score: 720
Period size: 157 Copynumber: 4.6 Consensus size: 156
245385 TAAGAATGGG
* * * *
245395 GTTTTAAAAATAAAATCGAGGTTGGAGTATCCCCTCAAAAATAACTGGGTTAGAGTATCCTCGAT
1 GTTTTAGAAATAAAA-CGAGGTTAGAGTATCCCCTCAAAAATAACAGGGTTAGAGTATCCCCGAT
* * * *
245460 GGTGAAAAATCGATATTTTAGAAATAAAATCGGGGTTGGAATATCCTCTCCAAAATAACACGGTT
65 GGTGAAAAATCGATGTTTTAGAAATAAAATCGGGGTTGGAGTATCCCCTCAAAAATAACA-GGTT
**
245525 GGACCATTCCCGATGGTGGAAAATCA-T
129 GGAGTATTCCCGATGGTGGAAAATCAGT
* * * *
245552 GTTTTAGAAATAAAATCGAGGTTAGAGTATCCCCTCGAATATAGC-GAGGTTGGAGTATCCCCGA
1 GTTTTAGAAATAAAA-CGAGGTTAGAGTATCCCCTCAAAAATAACAG-GGTTAGAGTATCCCCGA
** * ** *
245616 TGGTGAAAAATC-ATGTTTTAGAAATAAAA-CCAGGTTGGGAGTGTCCCCTCTGAAATAACGAGA
64 TGGTGAAAAATCGATGTTTTAGAAATAAAATCGGGGTT-GGAGTATCCCCTCAAAAATAAC-AGG
*
245679 TTGGAGTA-TCTCCGATGGTCGAAAAT-AGGT
127 TTGGAGTATTC-CCGATGGTGGAAAATCA-GT
* * * * *
245709 GTTTTAGAAATAAAACCAGGGTTGGAGTATCCCCTCGAAAATAACAGGATTAGAGTATCCCTGAT
1 GTTTTAGAAATAAAACGA-GGTTAGAGTATCCCCTCAAAAATAACAGGGTTAGAGTATCCCCGAT
**
245774 GGTGAAAAATCGATGTTTTAGAAATAAAATCGGGGTTGGAGTATCCCCTCAAAAATAATGGGGTT
65 GGTGAAAAATCGATGTTTTAGAAATAAAATCGGGGTTGGAGTATCCCCTCAAAAATAA-CAGGTT
* * * *
245839 AGAGTATGCTCGATGGTGAAAAATCAGT
129 GGAGTATTCCCGATGGTGGAAAATCAGT
* * * * *
245867 GTTTTACAAATAAAACCGAGGTT-GAAGTATCCCCTCAGAAATAACGGGGTTAAAGTAT-CCTGA
1 GTTTTAGAAATAAAA-CGAGGTTAG-AGTATCCCCTCAAAAATAACAGGGTTAGAGTATCCCCGA
* * * * * *
245930 TGGTGGAAAATCGATGTTTTAGAAGTAAAACCAGGGTTGGAGTATCCTCTCGAAAATAACAAGGT
64 TGGTGAAAAATCGATGTTTTAGAAATAAAATCGGGGTTGGAGTATCCCCTCAAAAATAAC-AGGT
* * * *
245995 TGGAGTATCCCCGATGGTAGAAACTCGGT
128 TGGAGTATTCCCGATGGTGGAAAATCAGT
* * * * * * * * * *
246024 ATTTTAGAAATAAAACCAGGGTTAAAGTATCTCCTTAGAAATAACAAGATCAGAGTTTCCCCGAT
1 GTTTTAGAAATAAAACGA-GGTTAGAGTATCCCCTCAAAAATAACAGGGTTAGAGTATCCCCGAT
* * *
246089 GGTGGAAAATCGATATTTTAGGAATAA
65 GGTGAAAAATCGATGTTTTAGAAATAA
246116 GAAAAACATT
Statistics
Matches: 468, Mismatches: 77, Indels: 37
0.80 0.13 0.06
Matches are distributed among these distances:
155 8 0.02
156 59 0.13
157 259 0.55
158 133 0.28
159 9 0.02
ACGTcount: A:0.35, C:0.15, G:0.23, T:0.27
Consensus pattern (156 bp):
GTTTTAGAAATAAAACGAGGTTAGAGTATCCCCTCAAAAATAACAGGGTTAGAGTATCCCCGATG
GTGAAAAATCGATGTTTTAGAAATAAAATCGGGGTTGGAGTATCCCCTCAAAAATAACAGGTTGG
AGTATTCCCGATGGTGGAAAATCAGT
Found at i:246091 original size:236 final size:232
Alignment explanation
Indices: 245339--246108 Score: 805
Period size: 236 Copynumber: 3.3 Consensus size: 232
245329 AAAAACGAGA
* * * * ***
245339 TTAGAGTATCTCCTT-GAAA-ACTACAAGGTTGGAGTATCCCCAATGGT-AAGAATGGGGTTTTA
1 TTAGAGTATC-CCTTAGAAATA--ACGAGGTTAGAGTATCCCCGATGGTGAAAAATCATGTTTTA
* * * *
245401 AAAATAAAATCGAGGTTGGAGTATCCCCTCAAAAATAACTGGGTTAGAGTATCCTCGATGGTGAA
63 AAAATAAAACCGAGGTTGGAGTATCCCCTCAGAAATAACGGGGTTAGAGTATCCT-GATGGTGGA
* * * * * * **
245466 AAATCGATATTTTAGAAATAAAATCGGGGTTGGAATATCCTCTCCAAAATAACACGGTTGGACCA
127 AAATCGATGTTTTAGAAATAAAACCAGGGTTGGAGTATCCTCTCGAAAATAACAAGGTTGGAGTA
*
245531 TTCCCGATGGTGGAAAATC-ATGTTTTAGAAATAAAATCGAGG
192 TCCCCGATGGT-GAAAATCGATGTTTTAGAAATAAAATCG-GG
* * * * *
245573 TTAGAGTATCCCCTCGAATATAGCGAGGTTGGAGTATCCCCGATGGTGAAAAATCATGTTTTAGA
1 TTAGAGTATCCCTTAGAA-ATAACGAGGTTAGAGTATCCCCGATGGTGAAAAATCATGTTTTAAA
* * * * * * *
245638 AATAAAACC-AGGTTGGGAGTGTCCCCTCTGAAATAACGAGATTGGAGTATCTCCGATGGTCGAA
65 AATAAAACCGAGGTT-GGAGTATCCCCTCAGAAATAACGGGGTTAGAGTATC-CTGATGGTGGAA
* * * *
245702 AATAGGTGTTTTAGAAATAAAACCAGGGTTGGAGTATCCCCTCGAAAATAAC-AGGATTAGAGTA
128 AATCGATGTTTTAGAAATAAAACCAGGGTTGGAGTATCCTCTCGAAAATAACAAGG-TTGGAGTA
*
245766 TCCCTGATGGTGAAAAATCGATGTTTTAGAAATAAAATCGGGG
192 TCCCCGATGGTG-AAAATCGATGTTTTAGAAATAAAATC-GGG
* * * * * * * *
245809 TTGGAGTATCCCCTCAAAAATAATGGGGTTAGAGTATGCTCGATGGTGAAAAATCAGTGTTTTAC
1 TTAGAGTAT-CCCTTAGAAATAACGAGGTTAGAGTATCCCCGATGGTGAAAAATCA-TGTTTTAA
* *
245874 AAATAAAACCGAGGTTGAAGTATCCCCTCAGAAATAACGGGGTTAAAGTATCCTGATGGTGGAAA
64 AAATAAAACCGAGGTTGGAGTATCCCCTCAGAAATAACGGGGTTAGAGTATCCTGATGGTGGAAA
*
245939 ATCGATGTTTTAGAAGTAAAACCAGGGTTGGAGTATCCTCTCGAAAATAACAAGGTTGGAGTATC
129 ATCGATGTTTTAGAAATAAAACCAGGGTTGGAGTATCCTCTCGAAAATAACAAGGTTGGAGTATC
* * * *
246004 CCCGATGGTAGAAACTCGGTATTTTAGAAATAAAACCAGGG
194 CCCGATGGT-GAAAATCGATGTTTTAGAAATAAAATC-GGG
* * * * * * *
246045 TTAAAGTATCTCCTTAGAAATAACAAGATCAGAGTTTCCCCGATGGTGGAAAATCGATATTTTA
1 TTAGAGTATC-CCTTAGAAATAACGAGGTTAGAGTATCCCCGATGGTGAAAAATC-ATGTTTTA
246109 GGAATAAGAA
Statistics
Matches: 439, Mismatches: 80, Indels: 32
0.80 0.15 0.06
Matches are distributed among these distances:
233 3 0.01
234 43 0.10
235 123 0.28
236 208 0.47
237 57 0.13
238 5 0.01
ACGTcount: A:0.35, C:0.15, G:0.23, T:0.27
Consensus pattern (232 bp):
TTAGAGTATCCCTTAGAAATAACGAGGTTAGAGTATCCCCGATGGTGAAAAATCATGTTTTAAAA
ATAAAACCGAGGTTGGAGTATCCCCTCAGAAATAACGGGGTTAGAGTATCCTGATGGTGGAAAAT
CGATGTTTTAGAAATAAAACCAGGGTTGGAGTATCCTCTCGAAAATAACAAGGTTGGAGTATCCC
CGATGGTGAAAATCGATGTTTTAGAAATAAAATCGGG
Found at i:248365 original size:20 final size:20
Alignment explanation
Indices: 248356--248393 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
248346 CAGTACATTG
248356 TTCATTGTATCGATACATCA
1 TTCATTGTATCGATACATCA
248376 TTCATTGTATCGATACAT
1 TTCATTGTATCGATACAT
248394 TCTATCTATA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.29, C:0.18, G:0.11, T:0.42
Consensus pattern (20 bp):
TTCATTGTATCGATACATCA
Found at i:248495 original size:20 final size:19
Alignment explanation
Indices: 248440--248515 Score: 89
Period size: 20 Copynumber: 3.8 Consensus size: 19
248430 ATATATTTTG
*
248440 CATTGTATCGATACAATACT
1 CATTGTATCGATAC-ATGCT
248460 CATTGTATCGATACATGGCT
1 CATTGTATCGATACAT-GCT
*
248480 CATTGTATCGATACATTGCA
1 CATTGTATCGATACA-TGCT
* *
248500 AAATGTATCGATACAT
1 CATTGTATCGATACAT
248516 TCAGGCATTT
Statistics
Matches: 50, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
19 3 0.06
20 46 0.92
21 1 0.02
ACGTcount: A:0.33, C:0.18, G:0.14, T:0.34
Consensus pattern (19 bp):
CATTGTATCGATACATGCT
Found at i:248507 original size:40 final size:40
Alignment explanation
Indices: 248440--248515 Score: 107
Period size: 40 Copynumber: 1.9 Consensus size: 40
248430 ATATATTTTG
** *
248440 CATTGTATCGATACAATACTCATTGTATCGATACATGGCT
1 CATTGTATCGATACAATACAAAATGTATCGATACATGGCT
* *
248480 CATTGTATCGATACATTGCAAAATGTATCGATACAT
1 CATTGTATCGATACAATACAAAATGTATCGATACAT
248516 TCAGGCATTT
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 31 1.00
ACGTcount: A:0.33, C:0.18, G:0.14, T:0.34
Consensus pattern (40 bp):
CATTGTATCGATACAATACAAAATGTATCGATACATGGCT
Found at i:251058 original size:51 final size:51
Alignment explanation
Indices: 251003--251118 Score: 146
Period size: 51 Copynumber: 2.3 Consensus size: 51
250993 TTATTTTCGA
* * * *
251003 GGGGATACTACAGC-CTCGATTTTA-TTTCTAAAATACCAATTTTTCATAATC
1 GGGGATACTACAACTC-CGATTTTATTTTC-AAAACACCAATTTCTCACAATC
*
251054 GGGGATACTCCAACTCCGATTTTATTTTCAAAACACCAATTTCTCACAATC
1 GGGGATACTACAACTCCGATTTTATTTTCAAAACACCAATTTCTCACAATC
*
251105 GGGGATACTCCAAC
1 GGGGATACTACAAC
251119 CCCGTTATTT
Statistics
Matches: 58, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
51 53 0.91
52 5 0.09
ACGTcount: A:0.31, C:0.24, G:0.13, T:0.32
Consensus pattern (51 bp):
GGGGATACTACAACTCCGATTTTATTTTCAAAACACCAATTTCTCACAATC
Found at i:251139 original size:79 final size:79
Alignment explanation
Indices: 251054--251437 Score: 468
Period size: 79 Copynumber: 4.9 Consensus size: 79
251044 TTTCATAATC
* * * *
251054 GGGGATACTCCAACTCCGATTTTATTTTCAAAACACC-AATTTCTCACAATCGGGGATACTCCAA
1 GGGGATACTCCAACCCCGATTTTAGTTTCAAAACACCGATTTTCT-ATAATCGGGGATACTCCAA
251118 CCCCGTTATTTTC-A
65 CCCCGTTATTTTCGA
** *** * * * *
251132 CAAGGATACTCCAACCCCGGCCTTA-TTTCTAAAGCATCAATTTTCTACAATCGGGGATACTCCA
1 -GGGGATACTCCAACCCCGATTTTAGTTTC-AAAACACCGATTTTCTATAATCGGGGATACTCCA
251196 ACCCCGTTATTTTCGA
64 ACCCCGTTATTTTCGA
* *
251212 GGGGATACTCCAACCCCGATTTTAGTTTCAAAATACCGATTTTCTATAATCAGGGATACTCCAAC
1 GGGGATACTCCAACCCCGATTTTAGTTTCAAAACACCGATTTTCTATAATCGGGGATACTCCAAC
*
251277 CCTGTTATTTTCGA
66 CCCGTTATTTTCGA
* * *
251291 GGGGATACTCCAACCCCGATTTTAGTTTCAAAATACCGATTTTCAATAATCAGGGATACTCCAAC
1 GGGGATACTCCAACCCCGATTTTAGTTTCAAAACACCGATTTTCTATAATCGGGGATACTCCAAC
**
251356 CTTGTTATTTTCGA
66 CCCGTTATTTTCGA
* * * * * * *
251370 GGGGATACTCCAATCCTGATTTTACTTCCAAAACACTGATTTTCCATAATCGGGGATACTCCAGC
1 GGGGATACTCCAACCCCGATTTTAGTTTCAAAACACCGATTTTCTATAATCGGGGATACTCCAAC
251435 CCC
66 CCC
251438 ATTGTTATCT
Statistics
Matches: 267, Mismatches: 34, Indels: 8
0.86 0.11 0.03
Matches are distributed among these distances:
78 4 0.01
79 252 0.94
80 11 0.04
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.31
Consensus pattern (79 bp):
GGGGATACTCCAACCCCGATTTTAGTTTCAAAACACCGATTTTCTATAATCGGGGATACTCCAAC
CCCGTTATTTTCGA
Found at i:252850 original size:20 final size:20
Alignment explanation
Indices: 252825--252900 Score: 98
Period size: 20 Copynumber: 3.7 Consensus size: 20
252815 AAAAACCCAG
*
252825 AATGTATTAATACAATGATA
1 AATGTATTGATACAATGATA
*
252845 AATGTATTGATATAATGATA
1 AATGTATTGATACAATGATA
*
252865 AATGTATTGATACAATTATA
1 AATGTATTGATACAATGATA
*
252885 AGTATGTATCGATACA
1 A--ATGTATTGATACA
252901 TTTACTTATG
Statistics
Matches: 49, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
20 37 0.76
22 12 0.24
ACGTcount: A:0.45, C:0.05, G:0.13, T:0.37
Consensus pattern (20 bp):
AATGTATTGATACAATGATA
Found at i:253825 original size:20 final size:21
Alignment explanation
Indices: 253792--253832 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 21
253782 TCGTTACAAA
253792 GAAAATTGTATTGATACATTT
1 GAAAATTGTATTGATACATTT
*
253813 GAAAATT-TGTTGATACATTT
1 GAAAATTGTATTGATACATTT
253833 ACTTATGTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 12 0.63
21 7 0.37
ACGTcount: A:0.37, C:0.05, G:0.15, T:0.44
Consensus pattern (21 bp):
GAAAATTGTATTGATACATTT
Found at i:258584 original size:15 final size:16
Alignment explanation
Indices: 258559--258595 Score: 58
Period size: 15 Copynumber: 2.4 Consensus size: 16
258549 TAAAAATAAT
258559 AATATAATTATAATTA
1 AATATAATTATAATTA
*
258575 AATA-AATTATTATTA
1 AATATAATTATAATTA
258590 AATATA
1 AATATA
258596 TGGTACTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
15 14 0.74
16 5 0.26
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (16 bp):
AATATAATTATAATTA
Found at i:266337 original size:20 final size:20
Alignment explanation
Indices: 266314--266351 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
266304 TTAAAATTTA
266314 ATCT-TTTTTGCATCAAAACT
1 ATCTGTTTTT-CATCAAAACT
266334 ATCTGTTTTTCATCAAAA
1 ATCTGTTTTTCATCAAAA
266352 TCATCAACAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.32, C:0.18, G:0.05, T:0.45
Consensus pattern (20 bp):
ATCTGTTTTTCATCAAAACT
Found at i:268956 original size:19 final size:20
Alignment explanation
Indices: 268914--268985 Score: 85
Period size: 20 Copynumber: 3.6 Consensus size: 20
268904 ACACCCAAAT
*
268914 GTATCGATACATGTTACTTA
1 GTATCGATACATGTTACATA
268934 GTATCGATACATGTT-CATA
1 GTATCGATACATGTTACATA
** *
268953 GTATCGATACACCTTGAAAT-
1 GTATCGATACATGTT-ACATA
268973 GTATCGATACATG
1 GTATCGATACATG
268986 AAACTGGCAG
Statistics
Matches: 44, Mismatches: 6, Indels: 4
0.81 0.11 0.07
Matches are distributed among these distances:
19 16 0.36
20 26 0.59
21 2 0.05
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.35
Consensus pattern (20 bp):
GTATCGATACATGTTACATA
Found at i:269435 original size:13 final size:13
Alignment explanation
Indices: 269417--269441 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
269407 ATTTTGTTTA
269417 GTATCGATACATT
1 GTATCGATACATT
269430 GTATCGATACAT
1 GTATCGATACAT
269442 AAAACTGGCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
GTATCGATACATT
Found at i:270081 original size:35 final size:36
Alignment explanation
Indices: 270011--270098 Score: 114
Period size: 36 Copynumber: 2.6 Consensus size: 36
270001 CGAAGTGATT
*
270011 GAGAGGTTCTATCTTAGCCTTTGAAAAAGATAGGGA
1 GAGAGGTTCTATCTTAGCCTGTGAAAAAGATAGGGA
270047 GAGAGGTTCTATCTTAG-CTCGTG-AAAAGATA-GG-
1 GAGAGGTTCTATCTTAGCCT-GTGAAAAAGATAGGGA
*
270080 GAG-GTTTCTATCTTAGCCT
1 GAGAGGTTCTATCTTAGCCT
270099 TAAAAGATAC
Statistics
Matches: 48, Mismatches: 2, Indels: 7
0.84 0.04 0.12
Matches are distributed among these distances:
32 12 0.25
33 5 0.10
34 2 0.04
35 10 0.21
36 19 0.40
ACGTcount: A:0.28, C:0.14, G:0.27, T:0.31
Consensus pattern (36 bp):
GAGAGGTTCTATCTTAGCCTGTGAAAAAGATAGGGA
Found at i:271951 original size:20 final size:20
Alignment explanation
Indices: 271926--271980 Score: 110
Period size: 20 Copynumber: 2.8 Consensus size: 20
271916 TGTCAATTTT
271926 ATGTATCGATACAATACATG
1 ATGTATCGATACAATACATG
271946 ATGTATCGATACAATACATG
1 ATGTATCGATACAATACATG
271966 ATGTATCGATACAAT
1 ATGTATCGATACAAT
271981 GTATCAATAC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 35 1.00
ACGTcount: A:0.40, C:0.15, G:0.15, T:0.31
Consensus pattern (20 bp):
ATGTATCGATACAATACATG
Found at i:274182 original size:34 final size:33
Alignment explanation
Indices: 274134--274354 Score: 248
Period size: 34 Copynumber: 6.5 Consensus size: 33
274124 TGGTAAAAAC
*
274134 CACCATTTAATCAACAATGGCAACCTACCAAAT
1 CACCATTTAATCAACAATGGTAACCTACCAAAT
*
274167 CTACCATTTAGTCAACAATGGTAAGCC-ACCAAAT
1 C-ACCATTTAATCAACAATGGTAA-CCTACCAAAT
* *
274201 CACCCATTTAATCAATAATGGTAAGCTACCAAAT
1 CA-CCATTTAATCAACAATGGTAACCTACCAAAT
** * * *
274235 TTCTCATTTAATCAATAATGGTAAGCTATCAAAT
1 CAC-CATTTAATCAACAATGGTAACCTACCAAAT
* * *
274269 CTCTCATTTAGTCAACAATGGCAAACC-ACCAAAT
1 CAC-CATTTAATCAACAATGG-TAACCTACCAAAT
*
274303 CACCCATTTAATCAACAATGGTAAACTACCAAAT
1 CA-CCATTTAATCAACAATGGTAACCTACCAAAT
274337 CACCATTTAATCAACAAT
1 CACCATTTAATCAACAAT
274355 TCTCCCACTT
Statistics
Matches: 162, Mismatches: 18, Indels: 16
0.83 0.09 0.08
Matches are distributed among these distances:
33 23 0.14
34 133 0.82
35 6 0.04
ACGTcount: A:0.41, C:0.25, G:0.08, T:0.26
Consensus pattern (33 bp):
CACCATTTAATCAACAATGGTAACCTACCAAAT
Found at i:274278 original size:102 final size:101
Alignment explanation
Indices: 274134--274354 Score: 327
Period size: 102 Copynumber: 2.2 Consensus size: 101
274124 TGGTAAAAAC
* *
274134 CACCATTTAATCAACAATGGCAACCTACCAAATCTACCATTTAGTCAACAATGGTAAGCCACCAA
1 CACCATTTAATCAACAATGGCAACCTACCAAATCTACCATTTAGTCAACAATGGCAAACCACCAA
* *
274199 ATCACCCATTTAATCAATAATGGTAAGCTACCAAAT
66 ATCACCCATTTAATCAACAATGGTAAACTACCAAAT
** * * * *
274235 TTCTCATTTAATCAATAATGGTAAGCTATCAAATCT-CTCATTTAGTCAACAATGGCAAACCACC
1 CAC-CATTTAATCAACAATGGCAACCTACCAAATCTAC-CATTTAGTCAACAATGGCAAACCACC
274299 AAATCACCCATTTAATCAACAATGGTAAACTACCAAAT
64 AAATCACCCATTTAATCAACAATGGTAAACTACCAAAT
274337 CACCATTTAATCAACAAT
1 CACCATTTAATCAACAAT
274355 TCTCCCACTT
Statistics
Matches: 105, Mismatches: 13, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
101 16 0.15
102 89 0.85
ACGTcount: A:0.41, C:0.25, G:0.08, T:0.26
Consensus pattern (101 bp):
CACCATTTAATCAACAATGGCAACCTACCAAATCTACCATTTAGTCAACAATGGCAAACCACCAA
ATCACCCATTTAATCAACAATGGTAAACTACCAAAT
Found at i:278817 original size:34 final size:33
Alignment explanation
Indices: 278769--278989 Score: 239
Period size: 34 Copynumber: 6.5 Consensus size: 33
278759 TGGTAAAAAC
**
278769 CACCATTTAATCAACAATGACAACCTACCAAAT
1 CACCATTTAATCAACAATGGTAACCTACCAAAT
* *
278802 CTACCATTTAGTCAACAATGGTAA-GTCACCAAAT
1 C-ACCATTTAATCAACAATGGTAACCT-ACCAAAT
* *
278836 CACCCATTTAATCAATAATGGTAAGCTACCAAAT
1 CA-CCATTTAATCAACAATGGTAACCTACCAAAT
** * *
278870 TTCTCATTTAATTAACAATGGTAAGCTACCAAAT
1 CAC-CATTTAATCAACAATGGTAACCTACCAAAT
* * *
278904 CTCCCATTTAGTCAACAATGGCAAACC-ACCAAAT
1 C-ACCATTTAATCAACAATGG-TAACCTACCAAAT
*
278938 CACCCATTTAATCAACAATGGTAAACTACCAAAT
1 CA-CCATTTAATCAACAATGGTAACCTACCAAAT
278972 CACCATTTAATCAACAAT
1 CACCATTTAATCAACAAT
278990 TATAACATAA
Statistics
Matches: 158, Mismatches: 21, Indels: 18
0.80 0.11 0.09
Matches are distributed among these distances:
33 23 0.15
34 130 0.82
35 5 0.03
ACGTcount: A:0.41, C:0.26, G:0.07, T:0.26
Consensus pattern (33 bp):
CACCATTTAATCAACAATGGTAACCTACCAAAT
Found at i:278887 original size:68 final size:67
Alignment explanation
Indices: 278771--278989 Score: 271
Period size: 68 Copynumber: 3.2 Consensus size: 67
278761 GTAAAAACCA
* * *
278771 CCATTTAATCAACAATGACAACCTACCAAATCTACCATTTAGTCAACAATGGTAAG-TCACCAAA
1 CCATTTAATCAACAATGGCAAACTACCAAAT-TACCATTTAATCAACAATGGTAAGCT-ACCAAA
278835 TCAC
64 TCAC
* * * * *
278839 CCATTTAATCAATAATGGTAAGCTACCAAATTTCTCATTTAATTAACAATGGTAAGCTACCAAAT
1 CCATTTAATCAACAATGGCAAACTACCAAATTAC-CATTTAATCAACAATGGTAAGCTACCAAAT
*
278904 CTC
65 CAC
* * * *
278907 CCATTTAGTCAACAATGGCAAACCACCAAATCACCCATTTAATCAACAATGGTAAACTACCAAAT
1 CCATTTAATCAACAATGGCAAACTACCAAATTA-CCATTTAATCAACAATGGTAAGCTACCAAAT
278972 CA-
65 CAC
278974 CCATTTAATCAACAAT
1 CCATTTAATCAACAAT
278990 TATAACATAA
Statistics
Matches: 129, Mismatches: 19, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
67 17 0.13
68 110 0.85
69 2 0.02
ACGTcount: A:0.41, C:0.26, G:0.07, T:0.26
Consensus pattern (67 bp):
CCATTTAATCAACAATGGCAAACTACCAAATTACCATTTAATCAACAATGGTAAGCTACCAAATC
AC
Found at i:278913 original size:102 final size:101
Alignment explanation
Indices: 278769--278989 Score: 325
Period size: 102 Copynumber: 2.2 Consensus size: 101
278759 TGGTAAAAAC
* **
278769 CACCATTTAATCAACAATGACAACCTACCAAATCTACCATTTAGTCAACAATGGTAAGTCACCAA
1 CACCATTTAATCAACAATGACAACCTACCAAATCTACCATTTAGTCAACAATGGCAAACCACCAA
* *
278834 ATCACCCATTTAATCAATAATGGTAAGCTACCAAAT
66 ATCACCCATTTAATCAACAATGGTAAACTACCAAAT
** * ** * *
278870 TTCTCATTTAATTAACAATGGTAAGCTACCAAATCTCCCATTTAGTCAACAATGGCAAACCACCA
1 CAC-CATTTAATCAACAATGACAACCTACCAAATCTACCATTTAGTCAACAATGGCAAACCACCA
278935 AATCACCCATTTAATCAACAATGGTAAACTACCAAAT
65 AATCACCCATTTAATCAACAATGGTAAACTACCAAAT
278972 CACCATTTAATCAACAAT
1 CACCATTTAATCAACAAT
278990 TATAACATAA
Statistics
Matches: 104, Mismatches: 15, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
101 15 0.14
102 89 0.86
ACGTcount: A:0.41, C:0.26, G:0.07, T:0.26
Consensus pattern (101 bp):
CACCATTTAATCAACAATGACAACCTACCAAATCTACCATTTAGTCAACAATGGCAAACCACCAA
ATCACCCATTTAATCAACAATGGTAAACTACCAAAT
Found at i:279570 original size:23 final size:23
Alignment explanation
Indices: 279511--279570 Score: 59
Period size: 23 Copynumber: 2.6 Consensus size: 23
279501 AATAAATTTT
*
279511 TAAAATTAAATTTTATTTATTAA
1 TAAAATTAAATTTTATTCATTAA
* ** *
279534 TATAATTATCTTTTGTTCATT-A
1 TAAAATTAAATTTTATTCATTAA
279556 TGAAAATTAAATTTT
1 T-AAAATTAAATTTT
279571 TGCTAATTGT
Statistics
Matches: 28, Mismatches: 8, Indels: 2
0.74 0.21 0.05
Matches are distributed among these distances:
22 2 0.07
23 26 0.93
ACGTcount: A:0.40, C:0.03, G:0.03, T:0.53
Consensus pattern (23 bp):
TAAAATTAAATTTTATTCATTAA
Found at i:280951 original size:20 final size:20
Alignment explanation
Indices: 280926--281056 Score: 84
Period size: 20 Copynumber: 6.7 Consensus size: 20
280916 CTGCCAGTTT
**
280926 CATGTATCGATACAATTGTC
1 CATGTATCGATACAATTGAA
280946 CATGTATCGATACAA-TGAA
1 CATGTATCGATACAATTGAA
*
280965 CATGTATTGATAC------A
1 CATGTATCGATACAATTGAA
280979 -ATGTATCGATACAA-TGAA
1 CATGTATCGATACAATTGAA
280997 CATGTATCGATACATTATATTGATA
1 CATGTATCGATAC---A-ATTGA-A
*
281022 CATTGTATCGATACAA-AGCAA
1 CA-TGTATCGATACAATTG-AA
*
281043 GATGTATCGATACA
1 CATGTATCGATACA
281057 TCTGGGTGTG
Statistics
Matches: 91, Mismatches: 6, Indels: 28
0.73 0.05 0.22
Matches are distributed among these distances:
13 11 0.12
14 1 0.01
18 1 0.01
19 26 0.29
20 27 0.30
21 3 0.03
22 3 0.03
23 2 0.02
24 3 0.03
25 3 0.03
26 11 0.12
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (20 bp):
CATGTATCGATACAATTGAA
Found at i:280984 original size:13 final size:13
Alignment explanation
Indices: 280966--281037 Score: 50
Period size: 13 Copynumber: 6.1 Consensus size: 13
280956 TACAATGAAC
*
280966 ATGTATTGATACA
1 ATGTATCGATACA
280979 ATGTATCGATAC-
1 ATGTATCGATACA
280991 A---AT-GA-AC-
1 ATGTATCGATACA
280998 ATGTATCGATACA
1 ATGTATCGATACA
* * *
281011 TTATATTGATACA
1 ATGTATCGATACA
*
281024 TTGTATCGATACA
1 ATGTATCGATACA
281037 A
1 A
281038 AGCAAGATGT
Statistics
Matches: 46, Mismatches: 7, Indels: 12
0.71 0.11 0.18
Matches are distributed among these distances:
7 3 0.07
8 2 0.04
9 2 0.04
10 2 0.04
11 2 0.04
12 3 0.07
13 32 0.70
ACGTcount: A:0.39, C:0.12, G:0.14, T:0.35
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:280988 original size:32 final size:32
Alignment explanation
Indices: 280947--281010 Score: 119
Period size: 32 Copynumber: 2.0 Consensus size: 32
280937 ACAATTGTCC
*
280947 ATGTATCGATACAATGAACATGTATTGATACA
1 ATGTATCGATACAATGAACATGTATCGATACA
280979 ATGTATCGATACAATGAACATGTATCGATACA
1 ATGTATCGATACAATGAACATGTATCGATACA
281011 TTATATTGAT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.41, C:0.14, G:0.16, T:0.30
Consensus pattern (32 bp):
ATGTATCGATACAATGAACATGTATCGATACA
Found at i:281022 original size:32 final size:32
Alignment explanation
Indices: 280950--281023 Score: 112
Period size: 32 Copynumber: 2.3 Consensus size: 32
280940 ATTGTCCATG
* *
280950 TATCGATACAATGAACATGTATTGATACAATG
1 TATCGATACAATGAACATGTATCGATACAATA
*
280982 TATCGATACAATGAACATGTATCGATACATTA
1 TATCGATACAATGAACATGTATCGATACAATA
*
281014 TATTGATACA
1 TATCGATACA
281024 TTGTATCGAT
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 38 1.00
ACGTcount: A:0.41, C:0.14, G:0.14, T:0.32
Consensus pattern (32 bp):
TATCGATACAATGAACATGTATCGATACAATA
Found at i:281033 original size:45 final size:46
Alignment explanation
Indices: 280969--281057 Score: 144
Period size: 45 Copynumber: 2.0 Consensus size: 46
280959 AATGAACATG
*
280969 TATTGATACAATGTATCGATACAATG-AACATGTATCGATACATTA
1 TATTGATACAATGTATCGATACAAAGCAACATGTATCGATACATTA
* *
281014 TATTGATACATTGTATCGATACAAAGCAAGATGTATCGATACAT
1 TATTGATACAATGTATCGATACAAAGCAACATGTATCGATACAT
281058 CTGGGTGTGT
Statistics
Matches: 40, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
45 24 0.60
46 16 0.40
ACGTcount: A:0.39, C:0.13, G:0.15, T:0.33
Consensus pattern (46 bp):
TATTGATACAATGTATCGATACAAAGCAACATGTATCGATACATTA
Found at i:281823 original size:24 final size:25
Alignment explanation
Indices: 281794--281871 Score: 63
Period size: 24 Copynumber: 3.0 Consensus size: 25
281784 AATTTAAATC
281794 TAAATATCTAAAAAAAATAATATAA
1 TAAATATCTAAAAAAAATAATATAA
*
281819 T-AATAACATAAAACATAAAATAA-ATATA
1 TAAATATC-T-AAA-A-AAAATAATATA-A
*
281847 TAAATATGT-AAAAAAATATATATAA
1 TAAATATCTAAAAAAAATA-ATATAA
281872 CACAAAAAAA
Statistics
Matches: 42, Mismatches: 3, Indels: 16
0.69 0.05 0.26
Matches are distributed among these distances:
24 11 0.26
25 5 0.12
26 8 0.19
27 4 0.10
28 10 0.24
29 4 0.10
ACGTcount: A:0.67, C:0.04, G:0.01, T:0.28
Consensus pattern (25 bp):
TAAATATCTAAAAAAAATAATATAA
Found at i:281849 original size:20 final size:19
Alignment explanation
Indices: 281826--281881 Score: 58
Period size: 20 Copynumber: 2.8 Consensus size: 19
281816 TAATAATAAC
281826 ATAAAACATAAAATAAATAT
1 ATAAAACATAAAA-AAATAT
**
281846 ATAAATATGTAAAAAAATAT
1 ATAAA-ACATAAAAAAATAT
* *
281866 ATATAACACAAAAAAA
1 ATAAAACATAAAAAAA
281882 AATTAAAAAA
Statistics
Matches: 29, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
19 8 0.28
20 15 0.52
21 6 0.21
ACGTcount: A:0.70, C:0.05, G:0.02, T:0.23
Consensus pattern (19 bp):
ATAAAACATAAAAAAATAT
Found at i:281902 original size:13 final size:13
Alignment explanation
Indices: 281886--281911 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
281876 AAAAAAAATT
281886 AAAAAAACCAAAA
1 AAAAAAACCAAAA
281899 AAAAAAACCAAAA
1 AAAAAAACCAAAA
281912 TAACCTAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.85, C:0.15, G:0.00, T:0.00
Consensus pattern (13 bp):
AAAAAAACCAAAA
Found at i:281911 original size:22 final size:22
Alignment explanation
Indices: 281875--281922 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 22
281865 TATATAACAC
**
281875 AAAAAAAAATTAAAAAAACCAA
1 AAAAAAAAACCAAAAAAACCAA
* *
281897 AAAAAAAAACCAAAATAACCTA
1 AAAAAAAAACCAAAAAAACCAA
281919 AAAA
1 AAAA
281923 TGTGTAAAGT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.79, C:0.12, G:0.00, T:0.08
Consensus pattern (22 bp):
AAAAAAAAACCAAAAAAACCAA
Found at i:282962 original size:16 final size:15
Alignment explanation
Indices: 282941--282983 Score: 52
Period size: 16 Copynumber: 2.7 Consensus size: 15
282931 ACTTTCTAGC
282941 AATTTACTTTTATCTT
1 AATTTACTTTT-TCTT
282957 AATTTA-TTTTTCTT
1 AATTTACTTTTTCTT
282971 ACGATTTACTTTT
1 A--ATTTACTTTT
282984 CTTGTAATTT
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
14 5 0.21
15 4 0.17
16 11 0.46
17 4 0.17
ACGTcount: A:0.23, C:0.12, G:0.02, T:0.63
Consensus pattern (15 bp):
AATTTACTTTTTCTT
Found at i:282999 original size:16 final size:16
Alignment explanation
Indices: 282956--282999 Score: 52
Period size: 16 Copynumber: 2.8 Consensus size: 16
282946 ACTTTTATCT
282956 TAATTTATTTTTCTTA
1 TAATTTATTTTTCTTA
** * *
282972 CGATTTACTTTTCTTG
1 TAATTTATTTTTCTTA
282988 TAATTTATTTTT
1 TAATTTATTTTT
283000 ACTGCTCTTT
Statistics
Matches: 21, Mismatches: 7, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.20, C:0.09, G:0.05, T:0.66
Consensus pattern (16 bp):
TAATTTATTTTTCTTA
Found at i:284039 original size:15 final size:17
Alignment explanation
Indices: 284008--284039 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
283998 CATGTGAGAC
284008 ATATGAATTATAATTTT
1 ATATGAATTATAATTTT
284025 ATAT-AATTA-AATTTT
1 ATATGAATTATAATTTT
284040 GAATTTGATA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 6 0.40
16 5 0.33
17 4 0.27
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.53
Consensus pattern (17 bp):
ATATGAATTATAATTTT
Found at i:285512 original size:31 final size:31
Alignment explanation
Indices: 285474--285535 Score: 97
Period size: 31 Copynumber: 2.0 Consensus size: 31
285464 AGGCAAGCCT
* *
285474 ACACCAATTAATGTTATCACCACTTTCCTAA
1 ACACCAATTAATGATATCACCAATTTCCTAA
*
285505 ACACCAATTAGTGATATCACCAATTTCCTAA
1 ACACCAATTAATGATATCACCAATTTCCTAA
285536 TAATTCTCTA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.37, C:0.27, G:0.05, T:0.31
Consensus pattern (31 bp):
ACACCAATTAATGATATCACCAATTTCCTAA
Found at i:286089 original size:22 final size:25
Alignment explanation
Indices: 286064--286113 Score: 61
Period size: 24 Copynumber: 2.1 Consensus size: 25
286054 TTATTTTTAT
*
286064 ATTT-ATATATTTT-TA-TAATTAA
1 ATTTAATAAATTTTGTATTAATTAA
286086 ATTTTAATAAATTTTGTATTAATTAA
1 A-TTTAATAAATTTTGTATTAATTAA
286112 AT
1 AT
286114 AATAATTAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
22 1 0.04
23 3 0.13
24 8 0.35
25 3 0.13
26 8 0.35
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (25 bp):
ATTTAATAAATTTTGTATTAATTAA
Found at i:286119 original size:26 final size:24
Alignment explanation
Indices: 286072--286119 Score: 60
Period size: 26 Copynumber: 1.9 Consensus size: 24
286062 ATATTTATAT
**
286072 ATTTTTATAATTAAATTTTAATAA
1 ATTTTTATAATTAAATAATAATAA
286096 ATTTTGTATTAATTAAATAATAAT
1 ATTTT-TA-TAATTAAATAATAAT
286120 TAAAATTAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 5 0.25
25 2 0.10
26 13 0.65
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (24 bp):
ATTTTTATAATTAAATAATAATAA
Found at i:287313 original size:9 final size:9
Alignment explanation
Indices: 287296--287338 Score: 50
Period size: 9 Copynumber: 4.6 Consensus size: 9
287286 ATATTCAGAT
287296 TAAAAAATA
1 TAAAAAATA
*
287305 TAAATAATA
1 TAAAAAATA
287314 TAAAAAATTA
1 TAAAAAA-TA
*
287324 TAAAATTATA
1 TAAAA-AATA
287334 TAAAA
1 TAAAA
287339 TTAAATTAAC
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
9 14 0.48
10 14 0.48
11 1 0.03
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (9 bp):
TAAAAAATA
Found at i:287319 original size:18 final size:20
Alignment explanation
Indices: 287296--287338 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
287286 ATATTCAGAT
287296 TAAAAAA-TAT-AAATAATA
1 TAAAAAATTATAAAATAATA
*
287314 TAAAAAATTATAAAATTATA
1 TAAAAAATTATAAAATAATA
287334 TAAAA
1 TAAAA
287339 TTAAATTAAC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 7 0.32
19 3 0.14
20 12 0.55
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (20 bp):
TAAAAAATTATAAAATAATA
Found at i:292218 original size:27 final size:27
Alignment explanation
Indices: 292188--292259 Score: 85
Period size: 27 Copynumber: 2.6 Consensus size: 27
292178 TTTATAAAGC
*
292188 TTAATTAAAAATTT-ATATGT-AAAATGT
1 TTAATTAAAAATTTCATACGTGAAAA--T
*
292215 TTAATTGAAAATTTCATACGTGAAAAT
1 TTAATTAAAAATTTCATACGTGAAAAT
292242 TTAATTAAAAAATTTCAT
1 TTAATT-AAAAATTTCAT
292260 GGGGAAAGGT
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
27 20 0.51
28 15 0.38
29 4 0.10
ACGTcount: A:0.47, C:0.04, G:0.07, T:0.42
Consensus pattern (27 bp):
TTAATTAAAAATTTCATACGTGAAAAT
Found at i:293943 original size:46 final size:46
Alignment explanation
Indices: 293838--293932 Score: 172
Period size: 46 Copynumber: 2.1 Consensus size: 46
293828 AATAATAAGG
* *
293838 ATAGAAAAGATGTAAATATAACCATACCTTAAGTCATTGTTCAAAT
1 ATAGAAAAGATTTACATATAACCATACCTTAAGTCATTGTTCAAAT
293884 ATAGAAAAGATTTACATATAACCATACCTTAAGTCATTGTTCAAAT
1 ATAGAAAAGATTTACATATAACCATACCTTAAGTCATTGTTCAAAT
293930 ATA
1 ATA
293933 TAACCTATTT
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 47 1.00
ACGTcount: A:0.45, C:0.14, G:0.09, T:0.32
Consensus pattern (46 bp):
ATAGAAAAGATTTACATATAACCATACCTTAAGTCATTGTTCAAAT
Found at i:294771 original size:28 final size:28
Alignment explanation
Indices: 294730--294955 Score: 249
Period size: 28 Copynumber: 7.9 Consensus size: 28
294720 TTTTTTACCT
294730 AGTGGCACCCTTTCAAAGCCCACAAGTC
1 AGTGGCACCCTTTCAAAGCCCACAAGTC
* *
294758 AGTGGCACCTTTTCAAAGCCCACAAGTT
1 AGTGGCACCCTTTCAAAGCCCACAAGTC
*
294786 AGTGGCATACCCTTTCAAAGCCCACACAAATC
1 AGTGGC--ACCCTTTCAAAG-CC-CACAAGTC
* * *
294818 AGTGGCACCCTTCCAAATCCCACAAGTT
1 AGTGGCACCCTTTCAAAGCCCACAAGTC
* * *
294846 AATGGCATCCTTTCAAAGCCCATAAGTC
1 AGTGGCACCCTTTCAAAGCCCACAAGTC
* * *
294874 AGTGGCACCTTTTCACAA-TCCACAAGTT
1 AGTGGCACCCTTTCA-AAGCCCACAAGTC
*
294902 AGTGGTACTCC-TTCAAAGCCCACAAGTC
1 AGTGGCAC-CCTTTCAAAGCCCACAAGTC
294930 AGTGGCATCCCCTTTCAAAGCCCACA
1 AGTGGCA--CCCTTTCAAAGCCCACA
294956 CAAGTTGGTG
Statistics
Matches: 162, Mismatches: 26, Indels: 18
0.79 0.13 0.09
Matches are distributed among these distances:
27 2 0.01
28 104 0.64
29 7 0.04
30 35 0.22
31 2 0.01
32 12 0.07
ACGTcount: A:0.30, C:0.33, G:0.15, T:0.22
Consensus pattern (28 bp):
AGTGGCACCCTTTCAAAGCCCACAAGTC
Found at i:294958 original size:116 final size:115
Alignment explanation
Indices: 294732--294961 Score: 308
Period size: 116 Copynumber: 2.0 Consensus size: 115
294722 TTTTACCTAG
294732 TGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACCTTTTCAAAGCCCACAAGTTAGTGGCATACC
1 TGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACCTTTTCAAAGCCCACAAGTTAGTGG-ATACC
*
294797 CTTTCAAAGCCCACACAAATCAGTGGCACCCTTCCAAATCCCACAAGTTAA
65 CTTTCAAAGCCCACACAAATCAGTGGCACCCTTCCAAACCCCACAAGTTAA
* * *
294848 TGGCATCCTTTCAAAGCCCATAAGTCAGTGGCACCTTTTCACAA-TCCACAAGTTAGTGG-TACT
1 TGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACCTTTTCA-AAGCCCACAAGTTAGTGGATAC-
* *
294911 CC-TTCAAAG-CC-CACAAGTCAGTGGCATCCCCTTTCAAAGCCCACACAAGTT
64 CCTTTCAAAGCCCACACAAATCAGTGGCA--CCCTTCCAAA-CCC-CACAAGTT
294962 GGTGGCTTCA
Statistics
Matches: 102, Mismatches: 6, Indels: 12
0.85 0.05 0.10
Matches are distributed among these distances:
112 14 0.14
113 2 0.02
114 19 0.19
115 4 0.04
116 61 0.60
117 2 0.02
ACGTcount: A:0.30, C:0.33, G:0.15, T:0.23
Consensus pattern (115 bp):
TGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACCTTTTCAAAGCCCACAAGTTAGTGGATACCC
TTTCAAAGCCCACACAAATCAGTGGCACCCTTCCAAACCCCACAAGTTAA
Found at i:295012 original size:144 final size:141
Alignment explanation
Indices: 294730--294998 Score: 323
Period size: 144 Copynumber: 1.9 Consensus size: 141
294720 TTTTTTACCT
* *
294730 AGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACCTTTTCAAAGCCCACAAGTTAGTGGCATA
1 AGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACCTCTTCAAAGCCCACAAGTCAGTGGCATA
* *
294795 CCCTTTCAAAGCCCACACAAATCAGTGGCACCCTTCCAAATCCCACAAGTTAATGGCATCCTTTC
66 CCCTTTCAAAGCCCACACAAATCAGTGG---CCTTCCAAAGCCCACAAGTTAATGACATCCTTTC
294860 AAAGCCCATAAGTC
128 AAAGCCCATAAGTC
* * * *
294874 AGTGGCACCTTTTCACAA-TCCACAAGTTAGTGGTA-CTCCTTCAAAGCCCACAAGTCAGTGGCA
1 AGTGGCACCCTTTCA-AAGCCCACAAGTCAGTGGCACCT-CTTCAAAGCCCACAAGTCAGTGGCA
* * ** *
294937 TCCCCTTTCAAAGCCCACACAAGTTGGTGG-CTT-CAAAGCCCACATAAGTTAGTGACA-CCTTT
64 TACCCTTTCAAAGCCCACACAAATCAGTGGCCTTCCAAAGCCCAC--AAGTTAATGACATCCTTT
294999 TTTTAAATGC
Statistics
Matches: 108, Mismatches: 13, Indels: 12
0.81 0.10 0.09
Matches are distributed among these distances:
139 9 0.08
140 8 0.07
141 10 0.09
143 2 0.02
144 77 0.71
145 2 0.02
ACGTcount: A:0.29, C:0.31, G:0.16, T:0.23
Consensus pattern (141 bp):
AGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACCTCTTCAAAGCCCACAAGTCAGTGGCATA
CCCTTTCAAAGCCCACACAAATCAGTGGCCTTCCAAAGCCCACAAGTTAATGACATCCTTTCAAA
GCCCATAAGTC
Found at i:295172 original size:48 final size:48
Alignment explanation
Indices: 295103--295330 Score: 287
Period size: 48 Copynumber: 4.8 Consensus size: 48
295093 GGCACCTTTA
* *
295103 TTAGCTTAATGTCGCTGGCCTTGAATCAGTACATTGTCCACTTTTCCC
1 TTAGCTCAATGTCGCTGGCCTTGAATCAGCACATTGTCCACTTTTCCC
* * * *
295151 TTAGCTCAATGTCGTTAGCCTTGAATCAGCACATTGCCCATTTTTCCC
1 TTAGCTCAATGTCGCTGGCCTTGAATCAGCACATTGTCCACTTTTCCC
* * *
295199 TTAGCTCAATTTCGCTGGCCTTGAATAAGCACATTGTCCACTTTTCCT
1 TTAGCTCAATGTCGCTGGCCTTGAATCAGCACATTGTCCACTTTTCCC
* * *
295247 TTAACTCAATGTCACTGGCCTTGAATCAGCACATTGTCCATTTTTCCC
1 TTAGCTCAATGTCGCTGGCCTTGAATCAGCACATTGTCCACTTTTCCC
* * * **
295295 TTCGCTCGATG-CTGTTGGCCTTGAATTTGCACATTG
1 TTAGCTCAATGTC-GCTGGCCTTGAATCAGCACATTG
295331 GCACTCCTCT
Statistics
Matches: 153, Mismatches: 26, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
47 1 0.01
48 152 0.99
ACGTcount: A:0.20, C:0.27, G:0.16, T:0.37
Consensus pattern (48 bp):
TTAGCTCAATGTCGCTGGCCTTGAATCAGCACATTGTCCACTTTTCCC
Found at i:296274 original size:20 final size:19
Alignment explanation
Indices: 296250--296324 Score: 80
Period size: 19 Copynumber: 3.8 Consensus size: 19
296240 ACACACCCAG
*
296250 ATGTATCGATACATGCTGCC
1 ATGTATCGATACATG-TGCA
* *
296270 TTGTATCGATACATGTTCA
1 ATGTATCGATACATGTGCA
296289 ATGTATCGATACATG-GACAA
1 ATGTATCGATACATGTG-C-A
296309 ATTGTATCGATACATG
1 A-TGTATCGATACATG
296325 AAAATGGCAG
Statistics
Matches: 47, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
19 17 0.36
20 16 0.34
21 14 0.30
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.33
Consensus pattern (19 bp):
ATGTATCGATACATGTGCA
Found at i:296385 original size:13 final size:13
Alignment explanation
Indices: 296369--296402 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
296359 CGATACATTG
296369 TACAATGTATCGA
1 TACAATGTATCGA
*
296382 TACATTGTATCGA
1 TACAATGTATCGA
296395 TAC-ATGTA
1 TACAATGTA
296403 GAAATGTATC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Consensus pattern (13 bp):
TACAATGTATCGA
Found at i:296395 original size:33 final size:33
Alignment explanation
Indices: 296353--296419 Score: 109
Period size: 33 Copynumber: 2.0 Consensus size: 33
296343 CTATCACTAT
*
296353 TTGTATCGATACATTGTA-CAATGTATCGATACA
1 TTGTATCGATACA-TGTAGAAATGTATCGATACA
296386 TTGTATCGATACATGTAGAAATGTATCGATACA
1 TTGTATCGATACATGTAGAAATGTATCGATACA
296419 T
1 T
296420 AGCTTGTAAC
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
32 4 0.12
33 28 0.88
ACGTcount: A:0.34, C:0.13, G:0.16, T:0.36
Consensus pattern (33 bp):
TTGTATCGATACATGTAGAAATGTATCGATACA
Found at i:304224 original size:22 final size:20
Alignment explanation
Indices: 304196--304248 Score: 63
Period size: 19 Copynumber: 2.6 Consensus size: 20
304186 AATTTTTACA
304196 TAAGGGGGAGAAGATAACTGTT
1 TAAGGGGGAGAAGAT-AC-GTT
* *
304218 TAAGGGGGAG-ATATTCGTT
1 TAAGGGGGAGAAGATACGTT
304237 TAAGGGGGAGAA
1 TAAGGGGGAGAA
304249 TTTTTTTTTA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
19 13 0.46
20 2 0.07
21 3 0.11
22 10 0.36
ACGTcount: A:0.34, C:0.04, G:0.40, T:0.23
Consensus pattern (20 bp):
TAAGGGGGAGAAGATACGTT
Found at i:304820 original size:13 final size:13
Alignment explanation
Indices: 304802--304828 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
304792 CCATGCTGCC
304802 TTGTATCGATACA
1 TTGTATCGATACA
304815 TTGTATCGATACA
1 TTGTATCGATACA
304828 T
1 T
304829 GTTCAATGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:304865 original size:21 final size:20
Alignment explanation
Indices: 304814--304869 Score: 69
Period size: 19 Copynumber: 2.8 Consensus size: 20
304804 GTATCGATAC
**
304814 ATTGTATCGATACATGTTCA
1 ATTGTATCGATACATGGACA
304834 A-TGTATCGATACATGGACAA
1 ATTGTATCGATACATGGAC-A
*
304854 ATTGTATTGATACATG
1 ATTGTATCGATACATG
304870 AAAATGGCAG
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
19 15 0.48
20 3 0.10
21 13 0.42
ACGTcount: A:0.34, C:0.12, G:0.18, T:0.36
Consensus pattern (20 bp):
ATTGTATCGATACATGGACA
Found at i:307093 original size:13 final size:13
Alignment explanation
Indices: 307075--307103 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
307065 CCATGCTGCC
307075 TTGTATCGATACA
1 TTGTATCGATACA
307088 TTGTATCGATACA
1 TTGTATCGATACA
307101 TTG
1 TTG
307104 AACATGTATC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.28, C:0.14, G:0.17, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:307138 original size:21 final size:20
Alignment explanation
Indices: 307087--307147 Score: 72
Period size: 19 Copynumber: 3.1 Consensus size: 20
307077 GTATCGATAC
* *
307087 ATTGTATCGATACATTGAAC
1 ATTGTATCGATACATGGAAA
307107 A-TGTATCGATACATGGACAA
1 ATTGTATCGATACATGGA-AA
*
307127 ATTGTATTGATACAT-GAAA
1 ATTGTATCGATACATGGAAA
307146 AT
1 AT
307148 GGCAGTAGCT
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
19 19 0.53
20 5 0.14
21 12 0.33
ACGTcount: A:0.39, C:0.11, G:0.16, T:0.33
Consensus pattern (20 bp):
ATTGTATCGATACATGGAAA
Found at i:308089 original size:20 final size:20
Alignment explanation
Indices: 308064--308118 Score: 74
Period size: 20 Copynumber: 2.8 Consensus size: 20
308054 TTTTACCTAG
* * *
308064 ATGTATCAATACATTTTTTA
1 ATGTATCGATACATTTATGA
*
308084 ATGTATCGATACATGTATGA
1 ATGTATCGATACATTTATGA
308104 ATGTATCGATACATT
1 ATGTATCGATACATT
308119 CTGTTTTTTT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.35, C:0.11, G:0.13, T:0.42
Consensus pattern (20 bp):
ATGTATCGATACATTTATGA
Found at i:308168 original size:20 final size:20
Alignment explanation
Indices: 308145--308301 Score: 100
Period size: 20 Copynumber: 7.3 Consensus size: 20
308135 AATATATCAG
308145 TACATTTTTCAATGTATCGA
1 TACATTTTTCAATGTATCGA
* * * * *
308165 TACATGTATGAATGTATTGG
1 TACATTTTTCAATGTATCGA
*
308185 TACATATTTCAATGTATCGA
1 TACATTTTTCAATGTATCGA
* * *
308205 TACATGTATGAATGTATCGA
1 TACATTTTTCAATGTATCGA
308225 TACATTTTGTCTTTTTATCCAGATGTATCGA
1 TACA--------TTTT-T-CA-ATGTATCGA
308256 TACATTTTTCAATGTATCGA
1 TACATTTTTCAATGTATCGA
**
308276 TACATTCAT-ACATGTATCGA
1 TACATTTTTCA-ATGTATCGA
308296 TACATT
1 TACATT
308302 CTGTCTTTTT
Statistics
Matches: 107, Mismatches: 18, Indels: 24
0.72 0.12 0.16
Matches are distributed among these distances:
19 1 0.01
20 82 0.77
21 2 0.02
22 1 0.01
23 4 0.04
28 2 0.02
29 1 0.01
30 1 0.01
31 13 0.12
ACGTcount: A:0.31, C:0.14, G:0.13, T:0.42
Consensus pattern (20 bp):
TACATTTTTCAATGTATCGA
Found at i:308199 original size:40 final size:40
Alignment explanation
Indices: 308144--308221 Score: 147
Period size: 40 Copynumber: 1.9 Consensus size: 40
308134 AAATATATCA
*
308144 GTACATTTTTCAATGTATCGATACATGTATGAATGTATTG
1 GTACATATTTCAATGTATCGATACATGTATGAATGTATTG
308184 GTACATATTTCAATGTATCGATACATGTATGAATGTAT
1 GTACATATTTCAATGTATCGATACATGTATGAATGTAT
308222 CGATACATTT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.32, C:0.10, G:0.17, T:0.41
Consensus pattern (40 bp):
GTACATATTTCAATGTATCGATACATGTATGAATGTATTG
Found at i:308292 original size:71 final size:71
Alignment explanation
Indices: 308176--308332 Score: 230
Period size: 71 Copynumber: 2.2 Consensus size: 71
308166 ACATGTATGA
* * * *
308176 ATGTATTGGTACATATTTCAATGTATCGATACATGTATGAATGTATCGATACATTTTGTCTTTTT
1 ATGTATCGATACATTTTTCAATGTATCGATACATGTATGAATGTATCGATACATTCTGTCTTTTT
308241 AT-CCAG
66 -TCCCAG
308247 ATGTATCGATACATTTTTCAATGTATCGATACAT-TCAT-ACATGTATCGATACATTCTGTCTTT
1 ATGTATCGATACATTTTTCAATGTATCGATACATGT-ATGA-ATGTATCGATACATTCTGTCTTT
308310 TTTCCCAG
64 TTTCCCAG
308318 ATGTATCGATACATT
1 ATGTATCGATACATT
308333 CATACATGTA
Statistics
Matches: 79, Mismatches: 4, Indels: 6
0.89 0.04 0.07
Matches are distributed among these distances:
70 3 0.04
71 76 0.96
ACGTcount: A:0.28, C:0.16, G:0.13, T:0.43
Consensus pattern (71 bp):
ATGTATCGATACATTTTTCAATGTATCGATACATGTATGAATGTATCGATACATTCTGTCTTTTT
TCCCAG
Found at i:312982 original size:20 final size:21
Alignment explanation
Indices: 312957--313009 Score: 65
Period size: 20 Copynumber: 2.6 Consensus size: 21
312947 ATCAATACAT
*
312957 TGTATCGATACATG-ACCA-AA
1 TGTATCGATACATGCA-AAGAA
*
312977 TGTATCGATACTTGCAAAGAA
1 TGTATCGATACATGCAAAGAA
312998 TGTATCGATACA
1 TGTATCGATACA
313010 GGTGATTGGC
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
20 14 0.50
21 14 0.50
ACGTcount: A:0.38, C:0.17, G:0.17, T:0.28
Consensus pattern (21 bp):
TGTATCGATACATGCAAAGAA
Found at i:318683 original size:8 final size:8
Alignment explanation
Indices: 318670--318708 Score: 69
Period size: 8 Copynumber: 4.8 Consensus size: 8
318660 ATTTGATTAA
318670 ATTTTGTG
1 ATTTTGTG
318678 ATTTTGTG
1 ATTTTGTG
318686 ATTTTGTG
1 ATTTTGTG
318694 ATTTTGTG
1 ATTTTGTG
318702 ATGTTTG
1 AT-TTTG
318709 ATGTTGAAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
8 26 0.87
9 4 0.13
ACGTcount: A:0.13, C:0.00, G:0.26, T:0.62
Consensus pattern (8 bp):
ATTTTGTG
Found at i:318925 original size:13 final size:13
Alignment explanation
Indices: 318906--318943 Score: 60
Period size: 13 Copynumber: 2.9 Consensus size: 13
318896 CAGCATTCTC
318906 TGTATCGATACA-
1 TGTATCGATACAG
318918 TGGTATCGATACAG
1 T-GTATCGATACAG
318932 TGTATCGATACA
1 TGTATCGATACA
318944 AAGGGTTTAT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
12 1 0.04
13 22 0.92
14 1 0.04
ACGTcount: A:0.32, C:0.16, G:0.21, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAG
Found at i:321315 original size:20 final size:19
Alignment explanation
Indices: 321286--321324 Score: 69
Period size: 20 Copynumber: 2.0 Consensus size: 19
321276 AGGTCAAAAC
321286 CCTTAAATGTATCGATACA
1 CCTTAAATGTATCGATACA
321305 CCTTCAAATGTATCGATACA
1 CCTT-AAATGTATCGATACA
321325 TAATGCACAG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 4 0.21
20 15 0.79
ACGTcount: A:0.36, C:0.23, G:0.10, T:0.31
Consensus pattern (19 bp):
CCTTAAATGTATCGATACA
Found at i:321352 original size:13 final size:13
Alignment explanation
Indices: 321334--321358 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
321324 ATAATGCACA
321334 GTATCGATACATT
1 GTATCGATACATT
321347 GTATCGATACAT
1 GTATCGATACAT
321359 GACCAAATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
GTATCGATACATT
Found at i:321371 original size:20 final size:21
Alignment explanation
Indices: 321346--321398 Score: 65
Period size: 20 Copynumber: 2.6 Consensus size: 21
321336 ATCGATACAT
*
321346 TGTATCGATACATG-ACCA-AA
1 TGTATCGATACATGCA-AAGAA
*
321366 TGTATCGATACTTGCAAAGAA
1 TGTATCGATACATGCAAAGAA
321387 TGTATCGATACA
1 TGTATCGATACA
321399 GGTGATTGGC
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
20 14 0.50
21 14 0.50
ACGTcount: A:0.38, C:0.17, G:0.17, T:0.28
Consensus pattern (21 bp):
TGTATCGATACATGCAAAGAA
Found at i:329831 original size:51 final size:51
Alignment explanation
Indices: 329764--329877 Score: 151
Period size: 51 Copynumber: 2.2 Consensus size: 51
329754 AAATAACGGG
*
329764 GTTGGAGTATCCCCGATTGT-GAGAAATTGGTGTTTT-GAAAATAAAACCGGA
1 GTTGGAGTATCCCCGATTGTGGA-AAATTGGTATTTTAG-AAATAAAACCGGA
* * * *
329815 GTTGGAATATCTCCGATTGTGGAAAATTGGTATTTTAGAAATAAAATCGGG
1 GTTGGAGTATCCCCGATTGTGGAAAATTGGTATTTTAGAAATAAAACCGGA
329866 GTTGGAGTATCC
1 GTTGGAGTATCC
329878 TCTCAAAAAT
Statistics
Matches: 54, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
51 51 0.94
52 3 0.06
ACGTcount: A:0.31, C:0.11, G:0.27, T:0.32
Consensus pattern (51 bp):
GTTGGAGTATCCCCGATTGTGGAAAATTGGTATTTTAGAAATAAAACCGGA
Found at i:329831 original size:121 final size:124
Alignment explanation
Indices: 329601--329930 Score: 357
Period size: 121 Copynumber: 2.6 Consensus size: 124
329591 GATGTTCTAG
* * * * *
329601 AAATAAATATCGAGATTGGAGTATCCCCTC-GAAAATAACAGGGTTGGAGTATCCCTGATTAT-A
1 AAATAAA-ATCGGGGTTGGAGTATCCCTTCAG-AAATAACAGGGTTGGAGTATCCCCGATTGTGA
* * * * *
329664 GGAAATCGATATTTTGAAAATAAAATCGGAGTTAGAGTATCCCCGATTGTGG-AAATTGG-T
64 -GAAATTGGTGTTTTGAAAATAAAACCGGAGTTAGAATATCCCCGATTGTGGAAAATTGGTT
* * *
329724 -AATAAAGTCGGGGTTGGAGCATCCCTTCAGAAATAACGGGGTTGGAGTATCCCCGATTGTGAGA
1 AAATAAAATCGGGGTTGGAGTATCCCTTCAGAAATAACAGGGTTGGAGTATCCCCGATTGTGAGA
* *
329788 AATTGGTGTTTTGAAAATAAAACCGGAGTTGGAATATCTCCGATTGTGGAAAATTGGTATTTT
66 AATTGGTGTTTTGAAAATAAAACCGGAGTTAGAATATCCCCGATTGTGGAAAATTGG----TT
* *
329851 AGAAATAAAATCGGGGTTGGAGTAT-CCTCTCAAAAATAACAGGATTGGAGTATCCCCGATTGTG
1 --AAATAAAATCGGGGTTGGAGTATCCCT-TCAGAAATAACAGGGTTGGAGTATCCCCGATTGTG
* *
329915 AAAAACTGGTGTTTTG
63 AGAAATTGGTGTTTTG
329931 GGAATAAATT
Statistics
Matches: 173, Mismatches: 22, Indels: 17
0.82 0.10 0.08
Matches are distributed among these distances:
121 88 0.51
122 15 0.09
127 1 0.01
129 3 0.02
130 66 0.38
ACGTcount: A:0.33, C:0.13, G:0.25, T:0.29
Consensus pattern (124 bp):
AAATAAAATCGGGGTTGGAGTATCCCTTCAGAAATAACAGGGTTGGAGTATCCCCGATTGTGAGA
AATTGGTGTTTTGAAAATAAAACCGGAGTTAGAATATCCCCGATTGTGGAAAATTGGTT
Found at i:329937 original size:79 final size:79
Alignment explanation
Indices: 329816--329989 Score: 231
Period size: 79 Copynumber: 2.2 Consensus size: 79
329806 AAAACCGGAG
* * * * *
329816 TTGGAATATCTCCGATTGTGGAAAATTGGTATTTTAGAAATAAAATCGGGGTTGGAGTATCCTCT
1 TTGGAGTATCCCCGATTGTGAAAAACTGGTATTTTAGAAATAAAATCGGGGTTGGAGTATCCCCT
329881 CAAAAATAACAGGA
66 CAAAAATAACAGGA
* * * * *
329895 TTGGAGTATCCCCGATTGTGAAAAACTGGTGTTTTGGGAATAAATTCGTGGTTGGAGTATCCCCT
1 TTGGAGTATCCCCGATTGTGAAAAACTGGTATTTTAGAAATAAAATCGGGGTTGGAGTATCCCCT
** *
329960 CGCAAATAACGGGA
66 CAAAAATAACAGGA
329974 TTGGAGTATCCCCGAT
1 TTGGAGTATCCCCGAT
329990 GACATTACGG
Statistics
Matches: 82, Mismatches: 13, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
79 82 1.00
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.30
Consensus pattern (79 bp):
TTGGAGTATCCCCGATTGTGAAAAACTGGTATTTTAGAAATAAAATCGGGGTTGGAGTATCCCCT
CAAAAATAACAGGA
Found at i:330009 original size:107 final size:107
Alignment explanation
Indices: 329863--330285 Score: 372
Period size: 107 Copynumber: 3.9 Consensus size: 107
329853 AAATAAAATC
* * * * * * **
329863 GGGGTTGGAGTATCCTCTCA-AAAATAACAGGATTGGAGTATCCCCGATTGTGAAAAACTGGTGT
1 GGGGTTGGAGTATCCTC-GATGAAATAACGGGGTTAGAGTATCCCCGATTATGAAAAACTAATGT
* ** * * *
329927 TTTGGGA-ATAAATTCGTGGTTGGAGTATCCCCTCGCAAATAAC
65 TTT-AGATATAAAGCCGGGGTTGGAGTATCCCCTCGGAAATAAA
* * * * * * * *
329970 GGGATTGGAGTATCCCCGATGACATTACGGGGTTGGAGTA-CCTTCGATTATGAACAA-TCAATA
1 GGGGTTGGAGTATCCTCGATGAAATAACGGGGTTAGAGTATCC-CCGATTATGAAAAACT-AATG
*
330033 TTTTAGATATAAAGCCGGGGTTGGAGTATCCCCTCGGAAATAAT
64 TTTTAGATATAAAGCCGGGGTTGGAGTATCCCCTCGGAAATAAA
* * *
330077 GGGGTGGGAATATCCTCGATGAAATAATGGGGTTAGAGTACCTCCCCGATTATGAAAAAAAAACA
1 GGGGTTGGAGTATCCTCGATGAAATAACGGGGTTAGAGTA--TCCCCGATTATG----AAAAAC-
*
330142 AAAT-TTTTAGATATAAAGCCGGGGTTGGAGTATCCCCTCGGAAATAAA
59 TAATGTTTTAGATATAAAGCCGGGGTTGGAGTATCCCCTCGGAAATAAA
* * * * *
330190 GGGGTTGGAGTATCCTCGATGAAATAACGGGGTTAGAGTATCTCCAATTGTGAAAAATTAGTGTT
1 GGGGTTGGAGTATCCTCGATGAAATAACGGGGTTAGAGTATCCCCGATTATGAAAAACTAATGTT
* ** *
330255 TT-GAAAATAAAATCGGAGTTGGAGTATCCCC
66 TTAG-ATATAAAGCCGGGGTTGGAGTATCCCC
330286 GATTGCGGTA
Statistics
Matches: 256, Mismatches: 45, Indels: 30
0.77 0.14 0.09
Matches are distributed among these distances:
106 9 0.04
107 141 0.55
109 8 0.03
110 2 0.01
111 9 0.04
113 84 0.33
114 3 0.01
ACGTcount: A:0.31, C:0.15, G:0.26, T:0.27
Consensus pattern (107 bp):
GGGGTTGGAGTATCCTCGATGAAATAACGGGGTTAGAGTATCCCCGATTATGAAAAACTAATGTT
TTAGATATAAAGCCGGGGTTGGAGTATCCCCTCGGAAATAAA
Found at i:330176 original size:113 final size:109
Alignment explanation
Indices: 329944--330234 Score: 388
Period size: 113 Copynumber: 2.7 Consensus size: 109
329934 ATAAATTCGT
* * * * * * *
329944 GGTTGGAGTATCCCCTCGCAAATAACGGGATTGGAGTATCCCCGATGACATTACGGGGTTGGAGT
1 GGTTGGAGTATCCCCTCGGAAATAAAGGGGTTGGAGTATCCTCGATGAAATAACGGGGTTAGAGT
* * * *
330009 ACCT--TCGATTATGAACAATCAATATTTTAGATATAAAGCCGG
66 ACCTCCCCGATTATGAAAAAACAAAATTTTAGATATAAAGCCGG
* * * *
330051 GGTTGGAGTATCCCCTCGGAAATAATGGGGTGGGAATATCCTCGATGAAATAATGGGGTTAGAGT
1 GGTTGGAGTATCCCCTCGGAAATAAAGGGGTTGGAGTATCCTCGATGAAATAACGGGGTTAGAGT
330116 ACCTCCCCGATTATGAAAAAAAAACAAAATTTTTAGATATAAAGCCGG
66 ACCTCCCCGATTATG---AAAAAACAAAA-TTTTAGATATAAAGCCGG
330164 GGTTGGAGTATCCCCTCGGAAATAAAGGGGTTGGAGTATCCTCGATGAAATAACGGGGTTAGAGT
1 GGTTGGAGTATCCCCTCGGAAATAAAGGGGTTGGAGTATCCTCGATGAAATAACGGGGTTAGAGT
*
330229 ATCTCC
66 ACCTCC
330235 AATTGTGAAA
Statistics
Matches: 159, Mismatches: 19, Indels: 6
0.86 0.10 0.03
Matches are distributed among these distances:
107 59 0.37
109 8 0.05
112 8 0.05
113 84 0.53
ACGTcount: A:0.31, C:0.17, G:0.26, T:0.26
Consensus pattern (109 bp):
GGTTGGAGTATCCCCTCGGAAATAAAGGGGTTGGAGTATCCTCGATGAAATAACGGGGTTAGAGT
ACCTCCCCGATTATGAAAAAACAAAATTTTAGATATAAAGCCGG
Found at i:330197 original size:28 final size:28
Alignment explanation
Indices: 330162--330231 Score: 90
Period size: 28 Copynumber: 2.5 Consensus size: 28
330152 ATATAAAGCC
330162 GGGGTTGGAGTATCCCCTCG-GAAATAAA
1 GGGGTTGGAGTAT-CCCTCGAGAAATAAA
*
330190 GGGGTTGGAGTAT-CCTCGATGAAATAAC
1 GGGGTTGGAGTATCCCTCGA-GAAATAAA
*
330218 GGGGTTAGAGTATC
1 GGGGTTGGAGTATC
330232 TCCAATTGTG
Statistics
Matches: 37, Mismatches: 2, Indels: 5
0.84 0.05 0.11
Matches are distributed among these distances:
26 5 0.14
28 32 0.86
ACGTcount: A:0.27, C:0.14, G:0.34, T:0.24
Consensus pattern (28 bp):
GGGGTTGGAGTATCCCTCGAGAAATAAA
Found at i:330282 original size:51 final size:51
Alignment explanation
Indices: 330225--330364 Score: 140
Period size: 51 Copynumber: 2.7 Consensus size: 51
330215 AACGGGGTTA
* * *
330225 GAGTATCTCCAATTGTGAAAAATT-AGTG-TTTTGAAAATAAAATCGGAGTTG
1 GAGTATCCCCAATTGCGAAAAATTGA-TGCTTTAG-AAATAAAATCGGAGTTG
* **
330276 GAGTATCCCCGATTGCGGTAAATTGATGCTTTAGAAATAAAATCGGAGTTG
1 GAGTATCCCCAATTGCGAAAAATTGATGCTTTAGAAATAAAATCGGAGTTG
** ** * *
330327 GAGTATCCCTGATTAAGAAAAATTGATGTTTTGGAAAT
1 GAGTATCCCCAATTGCGAAAAATTGATGCTTTAGAAAT
330365 GGAACTGGGA
Statistics
Matches: 74, Mismatches: 13, Indels: 4
0.81 0.14 0.04
Matches are distributed among these distances:
51 69 0.93
52 5 0.07
ACGTcount: A:0.35, C:0.10, G:0.23, T:0.32
Consensus pattern (51 bp):
GAGTATCCCCAATTGCGAAAAATTGATGCTTTAGAAATAAAATCGGAGTTG
Found at i:332710 original size:20 final size:20
Alignment explanation
Indices: 332685--332758 Score: 98
Period size: 20 Copynumber: 3.7 Consensus size: 20
332675 AAAATGCCTG
*
332685 AATGTATCGATACATTGTAA
1 AATGTATCGATACAATGTAA
*
332705 AATGTATCGATACAATG-AGC
1 AATGTATCGATACAATGTA-A
332725 AATGTATCGATACAATGCT-A
1 AATGTATCGATACAATG-TAA
332745 AATGTATCGATACA
1 AATGTATCGATACA
332759 TCTAGGTAGA
Statistics
Matches: 48, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
19 1 0.02
20 47 0.98
ACGTcount: A:0.41, C:0.14, G:0.16, T:0.30
Consensus pattern (20 bp):
AATGTATCGATACAATGTAA
Found at i:332796 original size:13 final size:13
Alignment explanation
Indices: 332778--332803 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
332768 ACCCAGAATA
332778 TATCGATACAATG
1 TATCGATACAATG
332791 TATCGATACAATG
1 TATCGATACAATG
332804 AACAATGTAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
TATCGATACAATG
Found at i:333610 original size:41 final size:40
Alignment explanation
Indices: 333557--333649 Score: 104
Period size: 42 Copynumber: 2.4 Consensus size: 40
333547 AGGACAAATG
* *
333557 AAAAAAAGG-AAAATGAAA-TGGGTCCTACTCTTTGAGGAT
1 AAAAAAAGGAAAAAT-AAAGTGCGTCCTACTCTTTGAGGAC
*
333596 AAAAGAAAGAGAAAAATAAAGTGCGTCCTGCTCTTTGAGGAC
1 AAAA-AAAG-GAAAAATAAAGTGCGTCCTACTCTTTGAGGAC
333638 --AAAAAGGAAAAA
1 AAAAAAAGGAAAAA
333650 AAGGGAATGA
Statistics
Matches: 47, Mismatches: 3, Indels: 9
0.80 0.05 0.15
Matches are distributed among these distances:
38 6 0.13
39 8 0.17
40 6 0.13
41 4 0.09
42 23 0.49
ACGTcount: A:0.48, C:0.11, G:0.23, T:0.18
Consensus pattern (40 bp):
AAAAAAAGGAAAAATAAAGTGCGTCCTACTCTTTGAGGAC
Found at i:333797 original size:61 final size:61
Alignment explanation
Indices: 333689--334015 Score: 328
Period size: 61 Copynumber: 5.5 Consensus size: 61
333679 GGGCAAAGGA
* * *
333689 GAAAAGGAAAAGGCATCCTACTCTTTGAGGACTA-AAAAGTGCCACCAACTCTGTGGGCTTT
1 GAAAA-GAAAAGGCGTCCTGCTCTTTGAGGACTAGAAAAGTGCCACCAACTGTGTGGGCTTT
*
333750 GAAAAGAAAAGGCGTCCTGCTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGCGCTTT
1 GAAAAGAAAAGGCGTCCTGCTCTTTGAGGACTAGAAAAGTGCCACCAAC-TGTGTGGGCTTT
* *
333812 ------AAAAGGCGTCCTGCTCTTTGAAGACTGGAAAA-TGCCACCAACTTGTGTGGGCTTT
1 GAAAAGAAAAGGCGTCCTGCTCTTTGAGGACTAGAAAAGTGCCACCAAC-TGTGTGGGCTTT
* * * * * * *
333867 AAAAAGAAAAGACGTCTTGCTCTTTGAGGACTAGAATA-TGCCATCAACTTTTATGGGCTTT
1 GAAAAGAAAAGGCGTCCTGCTCTTTGAGGACTAGAAAAGTGCCACCAAC-TGTGTGGGCTTT
* * *
333928 -AAAAGGAAAAGGCATCCTGCTCTTTGTGGACT-GGAAAGTGCCACCAACCTGTGTGGGC--T
1 GAAAA-GAAAAGGCGTCCTGCTCTTTGAGGACTAGAAAAGTGCCACCAA-CTGTGTGGGCTTT
*
333987 G----TAAAAGGCGTCCTGCTCTTTGAGGACTA
1 GAAAAGAAAAGGCGTCCTGCTCTTTGAGGACTA
334016 AAGGGTGAAA
Statistics
Matches: 226, Mismatches: 27, Indels: 31
0.80 0.10 0.11
Matches are distributed among these distances:
55 46 0.20
56 30 0.13
59 1 0.00
60 33 0.15
61 105 0.46
62 11 0.05
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.26
Consensus pattern (61 bp):
GAAAAGAAAAGGCGTCCTGCTCTTTGAGGACTAGAAAAGTGCCACCAACTGTGTGGGCTTT
Found at i:333830 original size:116 final size:116
Alignment explanation
Indices: 333696--334015 Score: 359
Period size: 116 Copynumber: 2.8 Consensus size: 116
333686 GGAGAAAAGG
* * *
333696 AAAAGGCATCCTACTCTTTGAGGACTAAAAAGTGCCACCAACTCTGTGGGCTTTGAAAAGAAAAG
1 AAAAGGCATCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTGTGTGGGCTTTGAAAAGAAAAG
*
333761 GCGTCCTGCTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGCGCTTT-
66 GCGTCCTGCTCTTTGAGGACTAGAAAA-TGCCACCAACTTGTATGCGCTTTA
* * *
333812 AAAAGGCGTCCTGCTCTTTGAAGACTGGAAAA-TGCCACCAACTTGTGTGGGCTTTAAAAAGAAA
1 AAAAGGCATCCTGCTCTTTGAGGACT-GAAAAGTGCCACCAAC-TGTGTGGGCTTTGAAAAGAAA
* * * * * *
333876 AGACGTCTTGCTCTTTGAGGACTAGAATATGCCATCAACTTTTATGGGCTTTAAAA
64 AGGCGTCCTGCTCTTTGAGGACTAGAAAATGCCACCAACTTGTATGCGCTTT---A
* * *
333932 GGAAAAGGCATCCTGCTCTTTGTGGACTGGAAAGTGCCACCAACCTGTGTGGGC--TG----TAA
1 --AAAAGGCATCCTGCTCTTTGAGGACTGAAAAGTGCCACCAA-CTGTGTGGGCTTTGAAAAGAA
333991 AAGGCGTCCTGCTCTTTGAGGACTA
63 AAGGCGTCCTGCTCTTTGAGGACTA
334016 AAGGGTGAAA
Statistics
Matches: 173, Mismatches: 21, Indels: 20
0.81 0.10 0.09
Matches are distributed among these distances:
116 77 0.45
117 49 0.28
120 1 0.01
121 4 0.02
122 41 0.24
123 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.26
Consensus pattern (116 bp):
AAAAGGCATCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTGTGTGGGCTTTGAAAAGAAAAG
GCGTCCTGCTCTTTGAGGACTAGAAAATGCCACCAACTTGTATGCGCTTTA
Found at i:334304 original size:61 final size:60
Alignment explanation
Indices: 334036--334463 Score: 428
Period size: 61 Copynumber: 7.3 Consensus size: 60
334026 GGAGAGAAAG
* * * * *
334036 TCCTGCTCTTTGAAGATTGGGAAGTGCCGCCAACTTGTGTGGGCTTTAAAAGGTGAAA-GCA
1 TCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTAAAA-G-AAAAGGCA
* * *
334097 TCCTACTCTTTGAGGACTGGAAAATGCCACACCAACTTGTGTGGGCTTT----G-AAAGGCG
1 TCCTGCTCTTTGAGGACTGGAAAGTG-C-CACCAACTTGTGTGGGCTTTAAAAGAAAAGGCA
* * * *
334154 TCTTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTT--AAG---AGGCG
1 TCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCA
* * *
334209 TCCTGCTTTTTGAGGA-TTGAAAGGTGCCACCAACTTGTGTGGGTTTTAAAAAGAAAAGGCA
1 TCCTGCTCTTTGAGGACTGGAAA-GTGCCACCAACTTGTGTGGGCTTT-AAAAGAAAAGGCA
* * *
334270 TCCTGTTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTTAAAAGAAAAGGTA
1 TCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGC-TTTAAAAGAAAAGGCA
* * * *
334331 TCCTACTCTTTGAGGTCTGGAAGGTGCCACCAACTTGTGTGGGCTTTGCAAAGAGAAA-GCA
1 TCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTT-AAAAGA-AAAGGCA
334392 TCCTGCTCTTTGAGGA-T-GAGAAGTGCCACCAACTTGTGTGGGCTTT-----AAAAGGCA
1 TCCTGCTCTTTGAGGACTGGA-AAGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCA
334446 TCCTGCTCTTTGAGGACT
1 TCCTGCTCTTTGAGGACT
334464 AAAGGGCGAA
Statistics
Matches: 315, Mismatches: 33, Indels: 44
0.80 0.08 0.11
Matches are distributed among these distances:
53 3 0.01
54 24 0.08
55 62 0.20
56 4 0.01
57 26 0.08
58 4 0.01
59 2 0.01
60 29 0.09
61 130 0.41
62 12 0.04
63 19 0.06
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (60 bp):
TCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCA
Found at i:334831 original size:116 final size:112
Alignment explanation
Indices: 334482--335190 Score: 793
Period size: 116 Copynumber: 6.2 Consensus size: 112
334472 AAAAGAGAGA
* *
334482 GCGTCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAA-GCA
1 GCGTCCTACTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTT--AA-GA-AAAGGCA
* * *
334546 TCCTGCTTTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAG
62 TCCTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTAAAAG
* *
334598 GCGTCCTACTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAG---AGGCGTCCT
1 GCGTCCTACTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTAAGAAAAGGCATCCT
*
334660 GCTCTTTGAGGACTGAAAGGTGCCGCCAACTTGTGTGGGCTTTGAAAA-
66 GCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTT-AAAAG
* *
334708 GCGTCCTGCTCTTTGAGGACT-GAAAGGTGCCGCCAACTTGTGTGGGCTTTAAAAAGAAAAGGCA
1 GCGTCCTACTCTTTGAGGACTGGAAA-GTGCCACCAACTTGTGTGGGCTTT---AAGAAAAGGCA
* *
334772 TCCTACTCTTTGAGGTCTGGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAG
62 TCCTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTAAAAG
* * * * * *
334824 GCATCCTGCTCTTTGAGGACT-AAAAGAAATGCCACCAACTTCTGTAGGCTTT--G-AAAGGCGT
1 GCGTCCTACTCTTTGAGGACTGGAAAG---TGCCACCAACTTGTGTGGGCTTTAAGAAAAGGCAT
334885 CCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAG
63 CCTGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTT-AAAAG
334937 AAAAG-GTATCCTACTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTT---AAAAGG
1 ----GCG--TCCTACTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTAAGAAAAGG
* *
334998 CATCCTGCTCTTTGAGGACTAAAAGAAATGCCACCAACTTGTGTGGGCTTTGAAAG
60 CATCCTGCTCTTTGAGGACTGAAAG---TGCCACCAACTTGTGTGGGCTTTAAAAG
335054 GCGTCCT-CTTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAGGC
1 GCGTCCTAC-TCTTTGAGGACTGGAAA-GTGCCACCAACTTGTGTGGGCTTT---AAGAAAAGGC
* * * *
335117 GTCCTGCACTTTGAGGACTGGGAAGTGCCACCAACTTATGTGGGCTTTAAAAG
61 ATCCTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTAAAAG
*
335170 GTGTCCTACTCTTTGAGGACT
1 GCGTCCTACTCTTTGAGGACT
335191 AAAAAGTGAA
Statistics
Matches: 516, Mismatches: 38, Indels: 78
0.82 0.06 0.12
Matches are distributed among these distances:
109 9 0.02
110 83 0.16
111 12 0.02
112 86 0.17
113 11 0.02
114 3 0.01
115 6 0.01
116 205 0.40
117 10 0.02
118 84 0.16
119 7 0.01
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (112 bp):
GCGTCCTACTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTAAGAAAAGGCATCCT
GCTCTTTGAGGACTGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAG
Found at i:334929 original size:173 final size:173
Alignment explanation
Indices: 334485--335194 Score: 1012
Period size: 173 Copynumber: 4.1 Consensus size: 173
334475 AGAGAGAGCG
** * * *
334485 TCCTGCTCTTTGAGGACT--GGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAAGCATC
1 TCCTGCTCTTTGAGGACTAAAAGAAATGCCACCAACTTGTGTGGGCTTT-----GA-AAGGCGTC
* * *
334548 CTGCTTTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTT-----G-AAAGGCGTCCTA
60 CTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAGGCATCCTA
* * *
334606 CTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAGAGGCG
124 CTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCA
* * * *
334656 TCCTGCTCTTTGAGGACTGAAAG--GTGCCGCCAACTTGTGTGGGCTTTGAAAAGCGTCCTGCTC
1 TCCTGCTCTTTGAGGACTAAAAGAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTC
*
334719 TTTGAGGACTGAAAGGTGCCGCCAACTTGTGTGGGCTTTAAAAAGAAAAGGCATCCTACTCTTTG
66 TTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAGGCATCCTACTCTTTG
*
334784 AGGTCTGGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCA
131 AGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCA
* *
334827 TCCTGCTCTTTGAGGACTAAAAGAAATGCCACCAACTTCTGTAGGCTTTGAAAGGCGTCCTGCTC
1 TCCTGCTCTTTGAGGACTAAAAGAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTC
*
334892 TTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAGGTATCCTACTCTTTG
66 TTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAGGCATCCTACTCTTTG
334957 AGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCA
131 AGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCA
335000 TCCTGCTCTTTGAGGACTAAAAGAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCT-CTT
1 TCCTGCTCTTTGAGGACTAAAAGAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGC-T
* * *
335064 CTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAGGCGTCCTGCACTTT
65 CTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAGGCATCCTACTCTTT
* * **
335129 GAGGACTGGGAAGTGCCACCAACTTATGTGGGCTTTAAAAGGTG
130 GAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCA
*
335173 TCCTACTCTTTGAGGACTAAAA
1 TCCTGCTCTTTGAGGACTAAAA
335195 AGTGAAAGGA
Statistics
Matches: 495, Mismatches: 32, Indels: 22
0.90 0.06 0.04
Matches are distributed among these distances:
164 4 0.01
165 44 0.09
166 2 0.00
170 1 0.00
171 120 0.24
172 1 0.00
173 323 0.65
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.27
Consensus pattern (173 bp):
TCCTGCTCTTTGAGGACTAAAAGAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTC
TTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAGGCATCCTACTCTTTG
AGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCA
Found at i:335198 original size:55 final size:55
Alignment explanation
Indices: 334482--335198 Score: 782
Period size: 55 Copynumber: 12.5 Consensus size: 55
334472 AAAAGAGAGA
**
334482 GCGTCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAG
1 GCGTCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTT-AAA--AG
* * *
334540 AAAGCATCCTGCTTTTTGAGGACTGGAAAA-TGCCACCAACTTGTGTGGGCTTTGAAAG
1 ---GCGTCCTGCTCTTTGAGGACT-GAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAG
* *
334598 GCGTCCTACTCTTTGAGGACTGGAAAA-TGCCACCAACTTGTGTGGGCTTTAAGAG
1 GCGTCCTGCTCTTTGAGGACT-GAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAG
* *
334653 GCGTCCTGCTCTTTGAGGACTGAAAGGTGCCGCCAACTTGTGTGGGCTTTGAAAA-
1 GCGTCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTT-AAAAG
* *
334708 GCGTCCTGCTCTTTGAGGACTGAAAGGTGCCGCCAACTTGTGTGGGCTTTAAAAAGAAAAG
1 GCGTCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTT------AAAAG
* * * *
334769 GCATCCTACTCTTTGAGGTCTGGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAG
1 GCGTCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAG
* * * *
334824 GCATCCTGCTCTTTGAGGACT-AAAAGAAATGCCACCAACTTCTGTAGGCTTTGAAAG
1 GCGTCCTGCTCTTTGAGGACTGAAAAG---TGCCACCAACTTGTGTGGGCTTTAAAAG
*
334881 GCGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAG
1 GCGTCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTT-AAAAG
* *
334937 AAAAG-GTATCCTACTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAG
1 ----GCG--TCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAG
* *
334997 GCATCCTGCTCTTTGAGGACT-AAAAGAAATGCCACCAACTTGTGTGGGCTTTGAAAG
1 GCGTCCTGCTCTTTGAGGACTGAAAAG---TGCCACCAACTTGTGTGGGCTTTAAAAG
*
335054 GCGTCCT-CTTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAG
1 GCGTCCTGC-TCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTT------AAAAG
* ** *
335115 GCGTCCTGCACTTTGAGGACTGGGAAGTGCCACCAACTTATGTGGGCTTTAAAAG
1 GCGTCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAG
* * *
335170 GTGTCCTACTCTTTGAGGACTAAAAAGTG
1 GCGTCCTGCTCTTTGAGGACTGAAAAGTG
335199 AAAGGAGAAA
Statistics
Matches: 571, Mismatches: 52, Indels: 72
0.82 0.07 0.10
Matches are distributed among these distances:
54 12 0.02
55 255 0.45
56 9 0.02
57 90 0.16
58 10 0.02
59 1 0.00
60 13 0.02
61 177 0.31
62 4 0.01
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.27
Consensus pattern (55 bp):
GCGTCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAG
Found at i:336182 original size:21 final size:20
Alignment explanation
Indices: 336157--336231 Score: 71
Period size: 21 Copynumber: 3.6 Consensus size: 20
336147 CTTAAGCAGG
*
336157 TTCTTTTCTTTTTTATATTTT
1 TTCTTTT-TTTGTTATATTTT
*
336178 TTCTTTGTTTTGTTATGTTTT
1 TTCTTT-TTTTGTTATATTTT
* *
336199 TTGTTTTTTTGTT-TTTTTGT
1 TTCTTTTTTTGTTATATTT-T
*
336219 TTTTTTTTTTGTT
1 TTCTTTTTTTGTT
336232 TTTTGTTGTT
Statistics
Matches: 47, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
19 4 0.09
20 20 0.43
21 22 0.47
22 1 0.02
ACGTcount: A:0.04, C:0.04, G:0.09, T:0.83
Consensus pattern (20 bp):
TTCTTTTTTTGTTATATTTT
Found at i:336205 original size:7 final size:7
Alignment explanation
Indices: 336193--336255 Score: 78
Period size: 7 Copynumber: 9.1 Consensus size: 7
336183 TGTTTTGTTA
336193 TGTTTTT
1 TGTTTTT
336200 TGTTTTTT
1 TG-TTTTT
336208 TGTTTTT
1 TGTTTTT
336215 T-TGTTTT
1 TGT-TTTT
336222 T-TTTTT
1 TGTTTTT
336228 TGTTTTT
1 TGTTTTT
*
336235 TG-TTGT
1 TGTTTTT
336241 TGTTTTT
1 TGTTTTT
336248 TGTTTTT
1 TGTTTTT
336255 T
1 T
336256 TGAAAAAGAA
Statistics
Matches: 50, Mismatches: 2, Indels: 8
0.83 0.03 0.13
Matches are distributed among these distances:
6 11 0.22
7 32 0.64
8 7 0.14
ACGTcount: A:0.00, C:0.00, G:0.14, T:0.86
Consensus pattern (7 bp):
TGTTTTT
Found at i:336205 original size:28 final size:28
Alignment explanation
Indices: 336174--336255 Score: 89
Period size: 28 Copynumber: 3.0 Consensus size: 28
336164 CTTTTTTATA
336174 TTTTTTCT-TTGTTTTGTTATGTTTTTTG
1 TTTTTT-TGTTGTTTTGTTATGTTTTTTG
* * *
336202 TTTTTTTGTTTTTTTGTTTTTTTTTTTG
1 TTTTTTTGTTGTTTTGTTATGTTTTTTG
*
336230 -TTTTTTGTTGTTGTT-TTTTGTTTTTT
1 TTTTTTTGTTGTT-TTGTTATGTTTTTT
336256 TGAAAAAGAA
Statistics
Matches: 47, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
27 22 0.47
28 25 0.53
ACGTcount: A:0.01, C:0.01, G:0.13, T:0.84
Consensus pattern (28 bp):
TTTTTTTGTTGTTTTGTTATGTTTTTTG
Found at i:336206 original size:1 final size:1
Alignment explanation
Indices: 336195--336256 Score: 52
Period size: 1 Copynumber: 62.0 Consensus size: 1
336185 TTTTGTTATG
* * * * * * * *
336195 TTTTTTGTTTTTTTGTTTTTTTGTTTTTTTTTTTGTTTTTTGTTGTTGTTTTTTGTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
336257 GAAAAAGAAT
Statistics
Matches: 45, Mismatches: 16, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
1 45 1.00
ACGTcount: A:0.00, C:0.00, G:0.13, T:0.87
Consensus pattern (1 bp):
T
Found at i:336208 original size:20 final size:18
Alignment explanation
Indices: 336174--336255 Score: 78
Period size: 20 Copynumber: 4.3 Consensus size: 18
336164 CTTTTTTATA
*
336174 TTTTTTCTTTGTTTTGTTATG
1 TTTTTTGTTT-TTTT-TT-TG
*
336195 TTTTTTG-TTTTTTTGT-
1 TTTTTTGTTTTTTTTTTG
336211 TTTTTTGTTTTTTTTTTTG
1 TTTTTTG-TTTTTTTTTTG
336230 TTTTTTGTTGTTGTTTTTTG
1 TTTTTTGTT-TT-TTTTTTG
336250 TTTTTT
1 TTTTTT
336256 TGAAAAAGAA
Statistics
Matches: 53, Mismatches: 3, Indels: 11
0.79 0.04 0.16
Matches are distributed among these distances:
16 7 0.13
17 1 0.02
18 11 0.21
19 13 0.25
20 15 0.28
21 6 0.11
ACGTcount: A:0.01, C:0.01, G:0.13, T:0.84
Consensus pattern (18 bp):
TTTTTTGTTTTTTTTTTG
Found at i:347992 original size:13 final size:13
Alignment explanation
Indices: 347974--347998 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
347964 ACACAAAGTA
347974 TGTATCGATACAT
1 TGTATCGATACAT
347987 TGTATCGATACA
1 TGTATCGATACA
347999 CCATAAAATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:347995 original size:32 final size:33
Alignment explanation
Indices: 347954--348021 Score: 104
Period size: 33 Copynumber: 2.1 Consensus size: 33
347944 GTAGCCAAAC
*
347954 TTGTATCGATACA-CA-AAGTATGTATCGATACA
1 TTGTATCGATACACCATAA-AATGTATCGATACA
347986 TTGTATCGATACACCATAAAATGTATCGATACA
1 TTGTATCGATACACCATAAAATGTATCGATACA
348019 TTG
1 TTG
348022 GCTTGTAACG
Statistics
Matches: 33, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
32 13 0.39
33 18 0.55
34 2 0.06
ACGTcount: A:0.37, C:0.16, G:0.15, T:0.32
Consensus pattern (33 bp):
TTGTATCGATACACCATAAAATGTATCGATACA
Found at i:352943 original size:20 final size:19
Alignment explanation
Indices: 352897--352952 Score: 69
Period size: 20 Copynumber: 2.8 Consensus size: 19
352887 AAAACCCTTA
352897 AAAGTATCGATATACAT-TTG
1 AAAGTATCG--ATACATGTTG
352917 AAAGTATCGATACATGTTG
1 AAAGTATCGATACATGTTG
*
352936 CAATGTATCGATACATG
1 -AAAGTATCGATACATG
352953 AAAAAGATGT
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
18 6 0.18
19 3 0.09
20 24 0.73
ACGTcount: A:0.38, C:0.12, G:0.18, T:0.32
Consensus pattern (19 bp):
AAAGTATCGATACATGTTG
Found at i:353041 original size:13 final size:13
Alignment explanation
Indices: 353023--353047 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
353013 ACACAAAGTA
353023 TGTATCGATACAT
1 TGTATCGATACAT
353036 TGTATCGATACA
1 TGTATCGATACA
353048 CCATAAAATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:353044 original size:32 final size:33
Alignment explanation
Indices: 353003--353070 Score: 104
Period size: 33 Copynumber: 2.1 Consensus size: 33
352993 GTAGCCAAAC
*
353003 TTGTATCGATACA-CA-AAGTATGTATCGATACA
1 TTGTATCGATACACCATAA-AATGTATCGATACA
353035 TTGTATCGATACACCATAAAATGTATCGATACA
1 TTGTATCGATACACCATAAAATGTATCGATACA
353068 TTG
1 TTG
353071 GCTTGGAACG
Statistics
Matches: 33, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
32 13 0.39
33 18 0.55
34 2 0.06
ACGTcount: A:0.37, C:0.16, G:0.15, T:0.32
Consensus pattern (33 bp):
TTGTATCGATACACCATAAAATGTATCGATACA
Found at i:355153 original size:122 final size:122
Alignment explanation
Indices: 354924--355159 Score: 325
Period size: 122 Copynumber: 1.9 Consensus size: 122
354914 GAAATAAAAA
354924 TCGGGGTTGGAGTATCCCTTCGAAAATAACAGGGTTGGAGTATCCCTGATTATAGAAAATCAGTA
1 TCGGGGTTGGAGTATCCCTTCGAAAATAACAGGGTTGGAGTATCCCTGATTATAGAAAATCAGTA
* * * * *
354989 TTTTGAAAATAAAATCGGAGTTGGAGTATCCCTAATTGTGGAAAATTGGTAATAAAG
66 TTTTGAAAATAAAACCAGAGTTAGAATATCCCTAATTATGGAAAATTGGTAATAAAG
* **
355046 TCGGGGTTGGAGTATCCCTTC-AGAAATAACGGGGTTGGAGTATCCCTGATTAT-GAGAAATTGG
1 TCGGGGTTGGAGTATCCCTTCGA-AAATAACAGGGTTGGAGTATCCCTGATTATAGA-AAATCAG
* * *
355109 TGTTTTGGAAATAAAACCAGAGTTAGAATATCTCC-GATTATGGAAAATTGG
64 TATTTTGAAAATAAAACCAGAGTTAGAATATC-CCTAATTATGGAAAATTGG
355160 CATTTTAGAA
Statistics
Matches: 100, Mismatches: 11, Indels: 6
0.85 0.09 0.05
Matches are distributed among these distances:
121 3 0.03
122 95 0.95
123 2 0.02
ACGTcount: A:0.33, C:0.12, G:0.26, T:0.30
Consensus pattern (122 bp):
TCGGGGTTGGAGTATCCCTTCGAAAATAACAGGGTTGGAGTATCCCTGATTATAGAAAATCAGTA
TTTTGAAAATAAAACCAGAGTTAGAATATCCCTAATTATGGAAAATTGGTAATAAAG
Found at i:355192 original size:51 final size:51
Alignment explanation
Indices: 355078--355195 Score: 125
Period size: 51 Copynumber: 2.3 Consensus size: 51
355068 GAAATAACGG
** *
355078 GGTTGGAGTATC-CCTGATTATGAGAAATTGGTGTTTTGGAAATAAAACCA
1 GGTTGGAGTATCTCCTGATTATGAGAAATTGGCATTTTAGAAATAAAACCA
* * **
355128 GAGTTAGAATATCTCC-GATTATG-GAAAATTGGCATTTTAGAAATAAAATTGA
1 G-GTTGGAGTATCTCCTGATTATGAG-AAATTGGCATTTTAGAAATAAAA-CCA
355180 GGTTGGAGTATCTCCT
1 GGTTGGAGTATCTCCT
355196 CGAAAATAAC
Statistics
Matches: 54, Mismatches: 9, Indels: 8
0.76 0.13 0.11
Matches are distributed among these distances:
50 2 0.04
51 48 0.89
52 4 0.07
ACGTcount: A:0.33, C:0.10, G:0.24, T:0.33
Consensus pattern (51 bp):
GGTTGGAGTATCTCCTGATTATGAGAAATTGGCATTTTAGAAATAAAACCA
Found at i:355439 original size:28 final size:28
Alignment explanation
Indices: 355368--355439 Score: 94
Period size: 28 Copynumber: 2.6 Consensus size: 28
355358 AAAGCCCGGA
355368 TTGGAGTATCCCCTCG--GAAATAACGGGG
1 TTGGAGTA-CCCC-CGATGAAATAACGGGG
* *
355396 TTGGAATATCCCCGATGAAATAACGGGG
1 TTGGAGTACCCCCGATGAAATAACGGGG
355424 TTGGAGTACCCCCGAT
1 TTGGAGTACCCCCGAT
355440 TATGAAAAAA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
26 2 0.05
27 3 0.08
28 33 0.87
ACGTcount: A:0.26, C:0.22, G:0.29, T:0.22
Consensus pattern (28 bp):
TTGGAGTACCCCCGATGAAATAACGGGG
Found at i:355504 original size:109 final size:107
Alignment explanation
Indices: 355259--355558 Score: 404
Period size: 109 Copynumber: 2.8 Consensus size: 107
355249 CTAAAAGCGA
* * * * *
355259 GGTTGGAGTATCCCCTCGGCAACAACGGGATTGGAGTATCCCCGATGACATAACAGGGTTTGAGT
1 GGTTGGAGTATCCCCTCGGAAACAACGGGGTTGGAGTATCCCCGATGAAATAACGGGGTTGGAGT
* * *
355324 ACCCCCAATTATGGACAATCAATATTTTAGATATAAAGCCCG
66 ACCCCCAATTATGAAAAATAAATATTTTAGATATAAAGCCCG
* * *
355366 GATTGGAGTATCCCCTCGGAAATAACGGGGTTGGAATATCCCCGATGAAATAACGGGGTTGGAGT
1 GGTTGGAGTATCCCCTCGGAAACAACGGGGTTGGAGTATCCCCGATGAAATAACGGGGTTGGAGT
* *
355431 ACCCCCGATTATGAAAAAAATAACAT-TTTTAGATATAAAGCCGG
66 ACCCCCAATTATG--AAAAATAA-ATATTTTAGATATAAAGCCCG
* *
355475 GGTTGGAGTATCCCCTCGGAAAGAACGGGGTTGGAGTATCCCCGATGAAATAACGAGGTTGGAGT
1 GGTTGGAGTATCCCCTCGGAAACAACGGGGTTGGAGTATCCCCGATGAAATAACGGGGTTGGAGT
* * *
355540 ATCCCCAGTTGTGAAAAAT
66 ACCCCCAATTATGAAAAAT
355559 TGGTATTTTG
Statistics
Matches: 169, Mismatches: 21, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
107 75 0.44
109 92 0.54
110 2 0.01
ACGTcount: A:0.31, C:0.19, G:0.26, T:0.24
Consensus pattern (107 bp):
GGTTGGAGTATCCCCTCGGAAACAACGGGGTTGGAGTATCCCCGATGAAATAACGGGGTTGGAGT
ACCCCCAATTATGAAAAATAAATATTTTAGATATAAAGCCCG
Found at i:355506 original size:28 final size:28
Alignment explanation
Indices: 355472--355545 Score: 103
Period size: 28 Copynumber: 2.6 Consensus size: 28
355462 GATATAAAGC
**
355472 CGGGGTTGGAGTATCCCCTCGGAAAGAA
1 CGGGGTTGGAGTATCCCCGAGGAAAGAA
* *
355500 CGGGGTTGGAGTATCCCCGATGAAATAA
1 CGGGGTTGGAGTATCCCCGAGGAAAGAA
*
355528 CGAGGTTGGAGTATCCCC
1 CGGGGTTGGAGTATCCCC
355546 AGTTGTGAAA
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 41 1.00
ACGTcount: A:0.24, C:0.22, G:0.34, T:0.20
Consensus pattern (28 bp):
CGGGGTTGGAGTATCCCCGAGGAAAGAA
Found at i:355603 original size:51 final size:49
Alignment explanation
Indices: 355536--355675 Score: 154
Period size: 51 Copynumber: 2.8 Consensus size: 49
355526 AACGAGGTTG
* *
355536 GAGTATCCCCAGTTGTGAAAAATTGGTATTTTGGAAATAAAATCGGAGTT
1 GAGTATCCCCA-TTGTGAAAAATTGATGTTTTGGAAATAAAATCGGAGTT
** * *
355586 AGAGTATCCCCGATTGTGGTAAATTGATGCTTTAGAAATAAAATCGGAGTT
1 -GAGTATCCCC-ATTGTGAAAAATTGATGTTTTGGAAATAAAATCGGAGTT
* **
355637 GAAGTATCCTCTATTAAGAAAAATTGATGTTTTGGAAAT
1 G-AGTATCC-CCATTGTGAAAAATTGATGTTTTGGAAAT
355676 GGAACTGGGA
Statistics
Matches: 73, Mismatches: 13, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
50 1 0.01
51 70 0.96
52 2 0.03
ACGTcount: A:0.35, C:0.10, G:0.22, T:0.33
Consensus pattern (49 bp):
GAGTATCCCCATTGTGAAAAATTGATGTTTTGGAAATAAAATCGGAGTT
Found at i:358021 original size:20 final size:20
Alignment explanation
Indices: 357996--358070 Score: 105
Period size: 20 Copynumber: 3.6 Consensus size: 20
357986 AAAAGGGCTG
357996 AATGTATCGATACATTGTAA
1 AATGTATCGATACATTGTAA
358016 AATGTATTATCGATACATTGTAA
1 AATG---TATCGATACATTGTAA
* *
358039 AATGTATCGATACAATGCAA
1 AATGTATCGATACATTGTAA
358059 AATGTATCGATA
1 AATGTATCGATA
358071 TATCCGAGTA
Statistics
Matches: 50, Mismatches: 2, Indels: 6
0.86 0.03 0.10
Matches are distributed among these distances:
20 30 0.60
23 20 0.40
ACGTcount: A:0.41, C:0.11, G:0.15, T:0.33
Consensus pattern (20 bp):
AATGTATCGATACATTGTAA
Found at i:358029 original size:23 final size:23
Alignment explanation
Indices: 358000--358065 Score: 93
Period size: 23 Copynumber: 3.0 Consensus size: 23
357990 GGGCTGAATG
358000 TATCGATACATTGTAAAATGTAT
1 TATCGATACATTGTAAAATGTAT
358023 TATCGATACATTGTAAAATG---
1 TATCGATACATTGTAAAATGTAT
* *
358043 TATCGATACAATGCAAAATGTAT
1 TATCGATACATTGTAAAATGTAT
358066 CGATATATCC
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
20 18 0.47
23 20 0.53
ACGTcount: A:0.41, C:0.11, G:0.14, T:0.35
Consensus pattern (23 bp):
TATCGATACATTGTAAAATGTAT
Found at i:362988 original size:14 final size:13
Alignment explanation
Indices: 362965--363032 Score: 57
Period size: 14 Copynumber: 4.9 Consensus size: 13
362955 TCAAAAGTAC
362965 AAACAGAAAAAAAA
1 AAACA-AAAAAAAA
*
362979 ACACAAAAAAACAA
1 AAACAAAAAAA-AA
362993 AAA-AAACAAAACAA
1 AAACAAA-AAAA-AA
363007 AAACAAAAAAAACA
1 AAACAAAAAAAA-A
* *
363021 CACCAAAAAAAA
1 AAACAAAAAAAA
363033 GTGCCAAGGC
Statistics
Matches: 46, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
13 10 0.22
14 33 0.72
15 3 0.07
ACGTcount: A:0.82, C:0.16, G:0.01, T:0.00
Consensus pattern (13 bp):
AAACAAAAAAAAA
Found at i:362990 original size:22 final size:21
Alignment explanation
Indices: 362965--363031 Score: 75
Period size: 20 Copynumber: 3.1 Consensus size: 21
362955 TCAAAAGTAC
362965 AAACAGAAAAAAAAACACAAAA
1 AAACA-AAAAAAAAACACAAAA
*
362987 AAACAAAAAAAACAA-A-ACAA
1 AAACAAAAAAAA-AACACAAAA
*
363007 AAACAAAAAAAACACACCAAAA
1 AAACAAAAAAAAAACA-CAAAA
363029 AAA
1 AAA
363032 AGTGCCAAGG
Statistics
Matches: 38, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
19 1 0.03
20 16 0.42
21 8 0.21
22 13 0.34
ACGTcount: A:0.82, C:0.16, G:0.01, T:0.00
Consensus pattern (21 bp):
AAACAAAAAAAAAACACAAAA
Found at i:362996 original size:20 final size:20
Alignment explanation
Indices: 362971--363031 Score: 79
Period size: 19 Copynumber: 3.0 Consensus size: 20
362961 GTACAAACAG
362971 AAAAAAAAACACAAAAAAAC
1 AAAAAAAAACACAAAAAAAC
*
362991 -AAAAAAAACAAAACAAAAAC
1 AAAAAAAAACACAA-AAAAAC
363011 AAAAAAAACACACCAAAAAAA
1 AAAAAAAA-ACA-CAAAAAAA
363032 AGTGCCAAGG
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
19 12 0.34
20 6 0.17
21 7 0.20
22 8 0.23
23 2 0.06
ACGTcount: A:0.84, C:0.16, G:0.00, T:0.00
Consensus pattern (20 bp):
AAAAAAAAACACAAAAAAAC
Found at i:365075 original size:79 final size:79
Alignment explanation
Indices: 364965--365177 Score: 265
Period size: 79 Copynumber: 2.7 Consensus size: 79
364955 TCAGTATCAT
*
364965 CGATTATGAAAAATCGATG-TTCTAGAAATAAAACCGGGGTTGGAGTATCCCCTCGAAGATAACA
1 CGATTATGAAAAATCGATGATT-TAGAAATAAAACCGGGGTTGGAGTATCCCCTCGAAAATAACA
*
365029 GGGTTGGAGTATCCC
65 GGGTTGAAGTATCCC
* * * *
365044 TGATTAT-AGAAAATC-A-GTATTTTGAACATAAAATCGGGGTTGGAGTATCCCCTCAAAAATAA
1 CGATTATGA-AAAATCGATG-ATTTAGAA-ATAAAACCGGGGTTGGAGTATCCCCTCGAAAATAA
365106 CAGGGTTGAAGTATCCC
63 CAGGGTTGAAGTATCCC
* * * *
365123 CGATTGTGAAAAATCGATGATTTAGAAATAAGACCGGGGTTGAAATAT-CCCTCGA
1 CGATTATGAAAAATCGATGATTTAGAAATAAAACCGGGGTTGGAGTATCCCCTCGA
365178 TTATGAGAAA
Statistics
Matches: 113, Mismatches: 14, Indels: 15
0.80 0.10 0.11
Matches are distributed among these distances:
77 1 0.01
78 12 0.11
79 90 0.80
80 9 0.08
81 1 0.01
ACGTcount: A:0.35, C:0.16, G:0.23, T:0.26
Consensus pattern (79 bp):
CGATTATGAAAAATCGATGATTTAGAAATAAAACCGGGGTTGGAGTATCCCCTCGAAAATAACAG
GGTTGAAGTATCCC
Found at i:365172 original size:51 final size:50
Alignment explanation
Indices: 365108--365258 Score: 158
Period size: 52 Copynumber: 2.9 Consensus size: 50
365098 AAAAATAACA
*
365108 GGGTTGAAGTATCCCCGATTGTGAAAAATCGATGATTTAGAAATAAGACCG
1 GGGTTGAAGTATCCCCGATTGTGAAAAATCGAT-ATTTAGAAATAAAACCG
* * * * * * *
365159 GGGTTGAAATATCCCTCGATTATGAGAAATCAATCTTTTGGAAATAAAATCG
1 GGGTTGAAGTATCCC-CGATTGTGAAAAATCGAT-ATTTAGAAATAAAACCG
* * * *
365211 GAGTTGGAGTATCCCCGATTGTGAAAAATTGGTATTTTAGAAATAAAA
1 GGGTTGAAGTATCCCCGATTGTGAAAAATCGATA-TTTAGAAATAAAA
365259 TAGAGATTGG
Statistics
Matches: 79, Mismatches: 19, Indels: 4
0.77 0.19 0.04
Matches are distributed among these distances:
51 39 0.49
52 40 0.51
ACGTcount: A:0.36, C:0.12, G:0.23, T:0.29
Consensus pattern (50 bp):
GGGTTGAAGTATCCCCGATTGTGAAAAATCGATATTTAGAAATAAAACCG
Found at i:365259 original size:51 final size:51
Alignment explanation
Indices: 365110--365277 Score: 169
Period size: 51 Copynumber: 3.3 Consensus size: 51
365100 AAATAACAGG
* * *
365110 GTTGAAGTATCCCCGATTGTGAAAAATCGATGA-TTTAGAAATAAGACCGGG
1 GTTGAAGTATCCCCGATTGTGAAAAATCGAT-ATTTTAGAAATAAAATCGGA
* * * * * *
365161 GTTGAAATATCCCTCGATTATGAGAAATCAATCTTTTGGAAATAAAATCGGA
1 GTTGAAGTATCCC-CGATTGTGAAAAATCGATATTTTAGAAATAAAATCGGA
* * * *
365213 GTTGGAGTATCCCCGATTGTGAAAAATTGGTATTTTAGAAATAAAAT-AGA
1 GTTGAAGTATCCCCGATTGTGAAAAATCGATATTTTAGAAATAAAATCGGA
*
365263 GATTGGAGTATCCCC
1 G-TTGAAGTATCCCC
365278 TCGAAAATAA
Statistics
Matches: 95, Mismatches: 19, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
50 3 0.03
51 52 0.55
52 40 0.42
ACGTcount: A:0.36, C:0.13, G:0.22, T:0.29
Consensus pattern (51 bp):
GTTGAAGTATCCCCGATTGTGAAAAATCGATATTTTAGAAATAAAATCGGA
Found at i:365294 original size:28 final size:28
Alignment explanation
Indices: 365263--365333 Score: 94
Period size: 28 Copynumber: 2.6 Consensus size: 28
365253 ATAAAATAGA
365263 GATTGGAGTATCCCCTCGA-AAATAACAG
1 GATTGGAGTATCCCC-CGAGAAATAACAG
365291 GATTGGAGTAT-CCCCGATGAAATAACAG
1 GATTGGAGTATCCCCCGA-GAAATAACAG
*
365319 GGTTGGAGTA-CCCCC
1 GATTGGAGTATCCCCC
365334 AATTATGAAA
Statistics
Matches: 39, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
26 3 0.08
27 3 0.08
28 33 0.85
ACGTcount: A:0.31, C:0.23, G:0.25, T:0.21
Consensus pattern (28 bp):
GATTGGAGTATCCCCCGAGAAATAACAG
Found at i:365361 original size:110 final size:110
Alignment explanation
Indices: 365245--365453 Score: 285
Period size: 110 Copynumber: 1.9 Consensus size: 110
365235 AAAATTGGTA
*
365245 TTTTAGAAATAAAATAGAGATTGGAGTATCCCCTCGAAAATAAC-AGGATTGGAGTATCCCCGAT
1 TTTTAGAAATAAAATAGAGATTGGAGTATCCCCTAGAAAATAACAAGG-TTGGAGTATCCCCGAT
365309 GAAATAACAGGGTTGGAGTACCCCCAATTATGAAACAAATCAATAT
65 GAAATAACAGGGTTGGAGTACCCCCAATTATGAAACAAATCAATAT
* * * * * *
365355 TTTTAGATATAAAGTCGGGGTTGGAGTATCCCCTAGGAAATAACAAGGTTGGAGTATCCCCGATG
1 TTTTAGAAATAAAATAGAGATTGGAGTATCCCCTAGAAAATAACAAGGTTGGAGTATCCCCGATG
* * * * * *
365420 GAGTAACGGGGTTGGAGTATCCCTAATTGTGAAA
66 AAATAACAGGGTTGGAGTACCCCCAATTATGAAA
365454 AATTGGTGTT
Statistics
Matches: 85, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
110 82 0.96
111 3 0.04
ACGTcount: A:0.35, C:0.15, G:0.24, T:0.26
Consensus pattern (110 bp):
TTTTAGAAATAAAATAGAGATTGGAGTATCCCCTAGAAAATAACAAGGTTGGAGTATCCCCGATG
AAATAACAGGGTTGGAGTACCCCCAATTATGAAACAAATCAATAT
Found at i:365413 original size:28 final size:28
Alignment explanation
Indices: 365373--365442 Score: 88
Period size: 28 Copynumber: 2.5 Consensus size: 28
365363 ATAAAGTCGG
*
365373 GGTTGGAGTATCCCCTA-GGAAATAACAA
1 GGTTGGAGTATCCCCGATGG-AATAACAA
* **
365401 GGTTGGAGTATCCCCGATGGAGTAACGG
1 GGTTGGAGTATCCCCGATGGAATAACAA
365429 GGTTGGAGTATCCC
1 GGTTGGAGTATCCC
365443 TAATTGTGAA
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
28 35 0.95
29 2 0.05
ACGTcount: A:0.26, C:0.19, G:0.33, T:0.23
Consensus pattern (28 bp):
GGTTGGAGTATCCCCGATGGAATAACAA
Found at i:367861 original size:33 final size:33
Alignment explanation
Indices: 367800--367862 Score: 83
Period size: 33 Copynumber: 1.9 Consensus size: 33
367790 TTGTAAAATG
* *
367800 TATCGATACAATGAGCAACGTATTGATACAATA
1 TATCGATACAATGAGAAACGTATCGATACAATA
*
367833 TATCGATACAATGCA-AAATGTATCGATACA
1 TATCGATACAATG-AGAAACGTATCGATACA
367863 TCTGGGTAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
33 25 0.96
34 1 0.04
ACGTcount: A:0.43, C:0.16, G:0.14, T:0.27
Consensus pattern (33 bp):
TATCGATACAATGAGAAACGTATCGATACAATA
Found at i:369244 original size:20 final size:20
Alignment explanation
Indices: 369219--369288 Score: 95
Period size: 20 Copynumber: 3.4 Consensus size: 20
369209 AAAAGGGCTG
*
369219 AATGTATCGATACATTGTAA
1 AATGTATCGATACATTGCAA
369239 AATGTATTATCGATACATTGCAA
1 AATG---TATCGATACATTGCAA
*
369262 AATGTATCGATACAATGCAA
1 AATGTATCGATACATTGCAA
369282 AATGTAT
1 AATGTAT
369289 GTTAAAAACA
Statistics
Matches: 45, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
20 26 0.58
23 19 0.42
ACGTcount: A:0.41, C:0.11, G:0.14, T:0.33
Consensus pattern (20 bp):
AATGTATCGATACATTGCAA
Found at i:369382 original size:20 final size:19
Alignment explanation
Indices: 369357--369430 Score: 87
Period size: 20 Copynumber: 3.7 Consensus size: 19
369347 AAATTGCCTG
369357 AATGTATCGATA-AATTGTAA
1 AATGTATCGATACAA-TG-AA
*
369377 AATGTATCGATACAATGAGC
1 AATGTATCGATACAATGA-A
*
369397 AATATATCGATACAATGCAA
1 AATGTATCGATACAATG-AA
369417 AATGTATCGATACA
1 AATGTATCGATACA
369431 TCTGGGTAAA
Statistics
Matches: 47, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
19 1 0.02
20 43 0.91
21 3 0.06
ACGTcount: A:0.45, C:0.12, G:0.15, T:0.28
Consensus pattern (19 bp):
AATGTATCGATACAATGAA
Found at i:370120 original size:31 final size:31
Alignment explanation
Indices: 370016--370452 Score: 490
Period size: 31 Copynumber: 14.0 Consensus size: 31
370006 ATCTCTCTTC
* * *
370016 TCAAAGTCCATGACTAAGTGGCATCTTCTCT
1 TCAAAGTCCACGACTCAGTGGCATCTTTTCT
*
370047 TCCCAAAGTCCACCACTCAGTGGCATCTTTT-T
1 T--CAAAGTCCACGACTCAGTGGCATCTTTTCT
*
370079 TCTAAGTCCACGACTCAGTGGCATCTTTTCT
1 TCAAAGTCCACGACTCAGTGGCATCTTTTCT
*
370110 TCAAAGTCCACAACTCAGTGGCATCTTTTCT
1 TCAAAGTCCACGACTCAGTGGCATCTTTTCT
* * *
370141 TTAAAGTCCACAACTCAGTGGCATCTCTT-T
1 TCAAAGTCCACGACTCAGTGGCATCTTTTCT
* *
370171 TCTAAGTCCATGACTCAGTGGCATCTTTTCT
1 TCAAAGTCCACGACTCAGTGGCATCTTTTCT
*
370202 TCAAAGTCCACAACTCAGTGGCATCTTTTTTCT
1 TCAAAGTCCACGACTCAGTGGCATC--TTTTCT
*
370235 TC-AAGTCCACGACTCAATGGCATCTTTTC-
1 TCAAAGTCCACGACTCAGTGGCATCTTTTCT
* * *
370264 CCAAAGTCCATGACTCAATGGCATCTTTTCT
1 TCAAAGTCCACGACTCAGTGGCATCTTTTCT
* *
370295 TCAAAGTCCACGACTCAGCGGCATCTCTT-T
1 TCAAAGTCCACGACTCAGTGGCATCTTTTCT
* *
370325 TCTAAGTCCACGACTTAGTGGCATCCTTTTCT
1 TCAAAGTCCACGACTCAGTGGCAT-CTTTTCT
* * * *
370357 TCCAAGTCCATGACTCCGTGGCATTTTTTTCT
1 TCAAAGTCCACGACTCAGTGGCA-TCTTTTCT
* * * *
370389 TCAAAATCCACGAATCCGTGGCATTTTTTTCT
1 TCAAAGTCCACGACTCAGTGGCA-TCTTTTCT
*
370421 TCAAAGTCCATGACTCTA-TGGCACTCTTTTCT
1 TCAAAGTCCACGACTC-AGTGGCA-TCTTTTCT
370453 CTTTAAAGCC
Statistics
Matches: 348, Mismatches: 46, Indels: 23
0.83 0.11 0.06
Matches are distributed among these distances:
29 1 0.00
30 104 0.30
31 109 0.31
32 101 0.29
33 33 0.09
ACGTcount: A:0.23, C:0.29, G:0.14, T:0.35
Consensus pattern (31 bp):
TCAAAGTCCACGACTCAGTGGCATCTTTTCT
Found at i:370134 original size:61 final size:61
Alignment explanation
Indices: 370019--370450 Score: 451
Period size: 61 Copynumber: 6.9 Consensus size: 61
370009 TCTCTTCTCA
* * * *
370019 AAGTCCATGACTAAGTGGCATCTTCTCTTCCCAAAGTCCACCACTCAGTGGCATCTTTTTTCT
1 AAGTCCACGACTCAGTGGCATCTTTTCTT--CAAAGTCCACGACTCAGTGGCATCTTTTTTCT
*
370082 AAGTCCACGACTCAGTGGCATCTTTTCTTCAAAGTCCACAACTCAGTGGCATCTTTTCTT-T
1 AAGTCCACGACTCAGTGGCATCTTTTCTTCAAAGTCCACGACTCAGTGGCATCTTTT-TTCT
* * * * *
370143 AAAGTCCACAACTCAGTGGCATCTCTT-TTCTAAGTCCATGACTCAGTGGCATCTTTTCTTCA
1 -AAGTCCACGACTCAGTGGCATCTTTTCTTCAAAGTCCACGACTCAGTGGCATCTTTT-TTCT
* * ** *
370205 AAGTCCACAACTCAGTGGCATCTTTTTTCTTC-AAGTCCACGACTCAATGGCATCTTTTCCCA
1 AAGTCCACGACTCAGTGGCATC--TTTTCTTCAAAGTCCACGACTCAGTGGCATCTTTTTTCT
* * * *
370267 AAGTCCATGACTCAATGGCATCTTTTCTTCAAAGTCCACGACTCAGCGGCATCTCTTTTCT
1 AAGTCCACGACTCAGTGGCATCTTTTCTTCAAAGTCCACGACTCAGTGGCATCTTTTTTCT
* * * *
370328 AAGTCCACGACTTAGTGGCATCCTTTTCTTCCAAGTCCATGACTCCGTGGCAT-TTTTTTCTT
1 AAGTCCACGACTCAGTGGCAT-CTTTTCTTCAAAGTCCACGACTCAGTGGCATCTTTTTTC-T
* * * * *
370390 CAAAATCCACGAATCCGTGGCATTTTTTTCTTCAAAGTCCATGACTCTA-TGGCACTCTTTT
1 --AAGTCCACGACTCAGTGGCA-TCTTTTCTTCAAAGTCCACGACTC-AGTGGCA-TCTTTT
370451 CTCTTTAAAG
Statistics
Matches: 315, Mismatches: 39, Indels: 27
0.83 0.10 0.07
Matches are distributed among these distances:
60 8 0.03
61 128 0.41
62 75 0.24
63 53 0.17
64 45 0.14
65 2 0.01
66 4 0.01
ACGTcount: A:0.23, C:0.28, G:0.14, T:0.34
Consensus pattern (61 bp):
AAGTCCACGACTCAGTGGCATCTTTTCTTCAAAGTCCACGACTCAGTGGCATCTTTTTTCT
Found at i:370559 original size:33 final size:32
Alignment explanation
Indices: 370052--371395 Score: 782
Period size: 33 Copynumber: 42.3 Consensus size: 32
370042 TCTCTTCCCA
* * * *
370052 AAGTCCACCACTCAGTGGCATCTTTT--TTCT
1 AAGTCCACAACTCTGTGGCACCTTTTCCTTTT
* * * **
370082 AAGTCCACGACTCAGTGGCATCTTTT-CTTCA
1 AAGTCCACAACTCTGTGGCACCTTTTCCTTTT
* * *
370113 AAGTCCACAACTCAGTGGCATCTTTT-CTTTA
1 AAGTCCACAACTCTGTGGCACCTTTTCCTTTT
* * * *
370144 AAGTCCACAACTCAGTGGCATCTCTT--TTCT
1 AAGTCCACAACTCTGTGGCACCTTTTCCTTTT
** * * **
370174 AAGTCCATGACTCAGTGGCATCTTTT-CTTCA
1 AAGTCCACAACTCTGTGGCACCTTTTCCTTTT
* *
370205 AAGTCCACAACTCAGTGGCATCTTTT--TTCTT
1 AAGTCCACAACTCTGTGGCACCTTTTCCTT-TT
* ** * **
370236 CAAGTCCACGACTCAATGGCATCTTTTCC--CA
1 -AAGTCCACAACTCTGTGGCACCTTTTCCTTTT
** ** * **
370267 AAGTCCATGACTCAATGGCATCTTTT-CTTCA
1 AAGTCCACAACTCTGTGGCACCTTTTCCTTTT
* * * * * *
370298 AAGTCCACGACTCAGCGGCATCTCTT--TTCT
1 AAGTCCACAACTCTGTGGCACCTTTTCCTTTT
* **
370328 AAGTCCACGACT-TAGTGGCATCCTTTT-CTTCC
1 AAGTCCACAACTCT-GTGGCA-CCTTTTCCTTTT
** * ** * **
370360 AAGTCCATGACTCCGTGGCATTTTTTTCTTCA
1 AAGTCCACAACTCTGTGGCACCTTTTCCTTTT
* * ** * **
370392 AAATCCACGAA-TCCGTGGCATTTTTTTCTTCA
1 AAGTCCAC-AACTCTGTGGCACCTTTTCCTTTT
** * *
370424 AAGTCCATGACTCTATGGCACTCTTTTCTCTTTA
1 AAGTCCACAACTCTGTGGCAC-CTTTTC-CTTTT
* * *
370458 AAGCCCCACAACTCCGTGGCACC----CCTGTT
1 AAG-TCCACAACTCTGTGGCACCTTTTCCTTTT
* * *
370487 -AGCCCACACCTCTGTGGCATCCCTTTTTCTTTTT
1 AAGTCCACAACTCTGTGGCA--CC-TTTTCCTTTT
*
370521 AAGTCCACAACTCTGTGGCACCTTATTACTTTT
1 AAGTCCACAACTCTGTGGCACCTT-TTCCTTTT
*
370554 AAGTCCACAACTCTGTGGCACCTTATTACTTTT
1 AAGTCCACAACTCTGTGGCACCTT-TTCCTTTT
*
370587 AAGTCCACAACTCCG-GGCA-C----CCTTTT
1 AAGTCCACAACTCTGTGGCACCTTTTCCTTTT
* * *
370613 AAGCCCACAACTCCGTGGCACTCTTTTTCATTTT
1 AAGTCCACAACTCTGTGGCAC-C-TTTTCCTTTT
*
370647 AAGTCCACAACTCCGTGGCA-C----CCTTTT
1 AAGTCCACAACTCTGTGGCACCTTTTCCTTTT
* * *
370674 AAGTCCATAACACCGTGGCA-C----CCTTTT
1 AAGTCCACAACTCTGTGGCACCTTTTCCTTTT
* * *
370701 AAGCCCACAACACCGTGGCACTCTTTTTCCTTTT
1 AAGTCCACAACTCTGTGGCAC-C-TTTTCCTTTT
370735 AAGTCCACAACTCTGTGGCACCTTTTTCCTTTT
1 AAGTCCACAACTCTGTGGCACC-TTTTCCTTTT
* *
370768 AAGTTCACAACTCTATGGCACCTTTTTCCTTTT
1 AAGTCCACAACTCTGTGGCACC-TTTTCCTTTT
* *
370801 AAGTCCACAACTCCGTGGTACCTTGTTCCTTTT
1 AAGTCCACAACTCTGTGGCACCTT-TTCCTTTT
* * *
370834 AAGTCCACAACTCCGTGGCACTTTTTTCTTTTT
1 AAGTCCACAACTCTGTGGCAC-CTTTTCCTTTT
*
370867 AAAGCCCACAACT-TCGTGGCACTCTTTTTCCTTTT
1 -AAGTCCACAACTCT-GTGGCAC-C-TTTTCCTTTT
*
370902 AAGTCCACAACTCTATGGCA-C----CCTTTT
1 AAGTCCACAACTCTGTGGCACCTTTTCCTTTT
* *
370929 AAGCCCACAACTCCGTGGCACTCTTTTTCCTTTT
1 AAGTCCACAACTCTGTGGCAC-C-TTTTCCTTTT
* **
370963 AAGTCCACAACTCTATATCACCTTTTTCCTTTT
1 AAGTCCACAACTCTGTGGCACC-TTTTCCTTTT
* *
370996 AGGTCCACAACTCTGTGCCACCTTTTTCCTTTT
1 AAGTCCACAACTCTGTGGCACC-TTTTCCTTTT
* **
371029 AAGTCCATAACTCCATGGCACCTTGTTCCTTTT
1 AAGTCCACAACTCTGTGGCACCTT-TTCCTTTT
*
371062 AAGTCCACAACT-TCGTGGCACCTTTTTCTTTTT
1 AAGTCCACAACTCT-GTGGCACC-TTTTCCTTTT
* * *
371095 AAAGCCCACAACTTTGTGGCACTCTTTTTCTTTTT
1 -AAGTCCACAACTCTGTGGCAC-C-TTTTCCTTTT
*
371130 GAGTCCACAACTCTGTGGCA-C----CCTTTT
1 AAGTCCACAACTCTGTGGCACCTTTTCCTTTT
* **
371157 AAGTCCACAACTCCGTGGCATATTTTTCCTTTT
1 AAGTCCACAACTCTGTGGCA-CCTTTTCCTTTT
* * *
371190 AAATCCACAACTCCGTGGCACTCTTTTTCTTTTT
1 AAGTCCACAACTCTGTGGCAC-C-TTTTCCTTTT
371224 AAGTCCACAACTCTGTGGCA-C----CCTTTT
1 AAGTCCACAACTCTGTGGCACCTTTTCCTTTT
* * *
371251 AAGTGCACAACTCCGTGGCATCTTTTTCCTTTT
1 AAGTCCACAACTCTGTGGCA-CCTTTTCCTTTT
*
371284 AAATCCACAACTCTGTGGCACCTTTTTCCTTTT
1 AAGTCCACAACTCTGTGGCACC-TTTTCCTTTT
* * *
371317 AAGTTCACAACTCCGTGGCACCTTGATCCTTTT
1 AAGTCCACAACTCTGTGGCACCTT-TTCCTTTT
*
371350 AAGTCCACAACGACTCCGTGGCACCTTTTTCCTTTTT
1 AAGTCCAC-A--ACTCTGTGGCACC-TTTTCC-TTTT
*
371387 AAGCCCACA
1 AAGTCCACA
371396 CCCCCATGGC
Statistics
Matches: 1092, Mismatches: 140, Indels: 158
0.79 0.10 0.11
Matches are distributed among these distances:
26 19 0.02
27 136 0.12
28 2 0.00
29 9 0.01
30 98 0.09
31 118 0.11
32 105 0.10
33 338 0.31
34 184 0.17
35 53 0.05
36 17 0.02
37 13 0.01
ACGTcount: A:0.21, C:0.31, G:0.13, T:0.35
Consensus pattern (32 bp):
AAGTCCACAACTCTGTGGCACCTTTTCCTTTT
Found at i:370655 original size:34 final size:33
Alignment explanation
Indices: 370607--371395 Score: 810
Period size: 33 Copynumber: 24.5 Consensus size: 33
370597 CTCCGGGCAC
*
370607 CCTTTTAAGCCCACAACTCCGTGGCACTCTTTTT
1 CCTTTTAAGTCCACAACTCCGTGGCAC-CTTTTT
*
370641 CATTTTAAGTCCACAACTCCGTGGCA-C-----
1 CCTTTTAAGTCCACAACTCCGTGGCACCTTTTT
* *
370668 CCTTTTAAGTCCATAACACCGTGGCA-C-----
1 CCTTTTAAGTCCACAACTCCGTGGCACCTTTTT
* *
370695 CCTTTTAAGCCCACAACACCGTGGCACTCTTTTT
1 CCTTTTAAGTCCACAACTCCGTGGCAC-CTTTTT
*
370729 CCTTTTAAGTCCACAACTCTGTGGCACCTTTTT
1 CCTTTTAAGTCCACAACTCCGTGGCACCTTTTT
* **
370762 CCTTTTAAGTTCACAACTCTATGGCACCTTTTT
1 CCTTTTAAGTCCACAACTCCGTGGCACCTTTTT
* *
370795 CCTTTTAAGTCCACAACTCCGTGGTACCTTGTT
1 CCTTTTAAGTCCACAACTCCGTGGCACCTTTTT
*
370828 CCTTTTAAGTCCACAACTCCGTGGCACTTTTTT
1 CCTTTTAAGTCCACAACTCCGTGGCACCTTTTT
* * *
370861 CTTTTTAAAGCCCACAACTTCGTGGCACTCTTTTT
1 CCTTTT-AAGTCCACAACTCCGTGGCAC-CTTTTT
**
370896 CCTTTTAAGTCCACAACTCTATGGCA-C-----
1 CCTTTTAAGTCCACAACTCCGTGGCACCTTTTT
*
370923 CCTTTTAAGCCCACAACTCCGTGGCACTCTTTTT
1 CCTTTTAAGTCCACAACTCCGTGGCAC-CTTTTT
** **
370957 CCTTTTAAGTCCACAACTCTATATCACCTTTTT
1 CCTTTTAAGTCCACAACTCCGTGGCACCTTTTT
* * *
370990 CCTTTTAGGTCCACAACTCTGTGCCACCTTTTT
1 CCTTTTAAGTCCACAACTCCGTGGCACCTTTTT
* * *
371023 CCTTTTAAGTCCATAACTCCATGGCACCTTGTT
1 CCTTTTAAGTCCACAACTCCGTGGCACCTTTTT
*
371056 CCTTTTAAGTCCACAACTTCGTGGCACCTTTTT
1 CCTTTTAAGTCCACAACTCCGTGGCACCTTTTT
* * **
371089 CTTTTTAAAGCCCACAACTTTGTGGCACTCTTTTT
1 CCTTTT-AAGTCCACAACTCCGTGGCAC-CTTTTT
* * *
371124 CTTTTTGAGTCCACAACTCTGTGGCA-C-----
1 CCTTTTAAGTCCACAACTCCGTGGCACCTTTTT
**
371151 CCTTTTAAGTCCACAACTCCGTGGCATATTTTT
1 CCTTTTAAGTCCACAACTCCGTGGCACCTTTTT
*
371184 CCTTTTAAATCCACAACTCCGTGGCACTCTTTTT
1 CCTTTTAAGTCCACAACTCCGTGGCAC-CTTTTT
* *
371218 CTTTTTAAGTCCACAACTCTGTGGCA-C-----
1 CCTTTTAAGTCCACAACTCCGTGGCACCTTTTT
* *
371245 CCTTTTAAGTGCACAACTCCGTGGCATCTTTTT
1 CCTTTTAAGTCCACAACTCCGTGGCACCTTTTT
* *
371278 CCTTTTAAATCCACAACTCTGTGGCACCTTTTT
1 CCTTTTAAGTCCACAACTCCGTGGCACCTTTTT
* **
371311 CCTTTTAAGTTCACAACTCCGTGGCACCTTGAT
1 CCTTTTAAGTCCACAACTCCGTGGCACCTTTTT
371344 CCTTTTAAGTCCACAACGACTCCGTGGCACCTTTTT
1 CCTTTTAAGTCCAC-A--ACTCCGTGGCACCTTTTT
*
371380 CCTTTTTAAGCCCACA
1 CC-TTTTAAGTCCACA
371396 CCCCCATGGC
Statistics
Matches: 637, Mismatches: 83, Indels: 68
0.81 0.11 0.09
Matches are distributed among these distances:
27 117 0.18
28 1 0.00
29 2 0.00
32 4 0.01
33 291 0.46
34 170 0.27
35 22 0.03
36 19 0.03
37 11 0.02
ACGTcount: A:0.20, C:0.31, G:0.12, T:0.37
Consensus pattern (33 bp):
CCTTTTAAGTCCACAACTCCGTGGCACCTTTTT
Found at i:370717 original size:88 final size:87
Alignment explanation
Indices: 370517--371338 Score: 336
Period size: 94 Copynumber: 8.7 Consensus size: 87
370507 CCCTTTTTCT
* * *
370517 TTTTAAGTCCACAACTCTGTGGCAC-CTTATT-ACTTTTAAGTCCACAACTCTGTGGCACCTTAT
1 TTTTAAGCCCACAACTCCGTGGCACTCTTTTTCA-TTTTAAGTCCACAACTCTGTGGCACC----
*
370580 TACTTTTAAGTCCACAACTCCGGGCACCC
61 --CTTTTAAGTCCACAACACCGGGCACCC
*
370609 TTTTAAGCCCACAACTCCGTGGCACTCTTTTTCATTTTAAGTCCACAACTCCGTGGCACCCTTTT
1 TTTTAAGCCCACAACTCCGTGGCACTCTTTTTCATTTTAAGTCCACAACTCTGTGGCACCCTTTT
*
370674 AAGTCCATAACACCGTGGCACCC
66 AAGTCCACAACACCG-GGCACCC
* *
370697 TTTTAAGCCCACAACACCGTGGCACTCTTTTTCCTTTTAAGTCCACAACTCTGTGGCACCTTTTT
1 TTTTAAGCCCACAACTCCGTGGCACTCTTTTTCATTTTAAGTCCACAACTCTGTGGCA-C-----
* * **
370762 CCTTTTAAGTTCACAACTCTATGGCACCTTTTTCC
60 CCTTTTAAGTCCACAACAC-CGGGCA-C-----CC
* * * * *
370797 TTTTAAGTCCACAACTCCGTGGTAC-CTTGTTCCTTTTAAGTCCACAACTCCGTGGCACTTTTTT
1 TTTTAAGCCCACAACTCCGTGGCACTCTTTTTCATTTTAAGTCCACAACTCTGTGGCAC------
* * **
370861 CTTTTTAAAGCCCACAACTTCGTGGCACTCTTTTTCC
60 CCTTTT-AAGTCCACAACACCG-GGCA--C-----CC
* ** * *
370898 TTTTAAGTCCACAACTCTATGGCAC-C-----C-TTTTAAGCCCACAACTCCGTGGCACTCTTTT
1 TTTTAAGCCCACAACTCCGTGGCACTCTTTTTCATTTTAAGTCCACAACTCTGTGGCA--C----
* ****
370956 TCCTTTTAAGTCCACAACTCTATATCACCTTTTTCC
60 -CCTTTTAAGTCCACAACAC-CGGGCA-C-----CC
* * * * * * **
370992 TTTTAGGTCCACAACTCTGTGCCAC-CTTTTTCCTTTTAAGTCCATAACTCCATGGCACCTTGTT
1 TTTTAAGCCCACAACTCCGTGGCACTCTTTTTCATTTTAAGTCCACAACTCTGTGGCA-C-----
**
371056 CCTTTTAAGTCCACAACTTCGTGGCACCTTTTTC
60 CCTTTTAAGTCCACAACACCG-GGCACC-----C
** * *
371090 TTTTTAAAGCCCACAACTTTGTGGCACTCTTTTTCTTTTTGAGTCCACAACTCTGTGGCACCCTT
1 -TTTT-AAGCCCACAACTCCGTGGCACTCTTTTTCATTTTAAGTCCACAACTCTGTGGCACCCTT
* *
371155 TTAAGTCCACAACTCCGTGGCATATTTTTCC
64 TTAAGTCCACAACACCG-GGC--A----CCC
** *
371186 TTTTAAATCCACAACTCCGTGGCACTCTTTTTCTTTTTAAGTCCACAACTCTGTGGCACCCTTTT
1 TTTTAAGCCCACAACTCCGTGGCACTCTTTTTCATTTTAAGTCCACAACTCTGTGGCACCCTTTT
* *
371251 AAGTGCACAACTCCGTGGCATCTTTTTCC
66 AAGTCCACAACACCG-GGCA-C-----CC
** * * * *
371280 TTTTAAATCCACAACTCTGTGGCAC-CTTTTTCCTTTTAAGTTCACAACTCCGTGGCACC
1 TTTTAAGCCCACAACTCCGTGGCACTCTTTTTCATTTTAAGTCCACAACTCTGTGGCACC
371339 TTGATCCTTT
Statistics
Matches: 608, Mismatches: 73, Indels: 97
0.78 0.09 0.12
Matches are distributed among these distances:
87 18 0.03
88 62 0.10
89 2 0.00
92 24 0.04
93 62 0.10
94 152 0.25
95 65 0.11
96 12 0.02
97 2 0.00
98 3 0.00
99 70 0.12
100 77 0.13
101 59 0.10
ACGTcount: A:0.21, C:0.31, G:0.12, T:0.36
Consensus pattern (87 bp):
TTTTAAGCCCACAACTCCGTGGCACTCTTTTTCATTTTAAGTCCACAACTCTGTGGCACCCTTTT
AAGTCCACAACACCGGGCACCC
Done.