Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold313
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 790584
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
File 5 of 6
Found at i:545574 original size:33 final size:33
Alignment explanation
Indices: 545537--545601 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 33
545527 TTGGAAGCAA
* *
545537 TGTATCGATACAAT-TCATCATGTATCGATACAT
1 TGTATCAATACAATGT-ACCATGTATCGATACAT
545570 TGTATCAATACAATGTACCATGTATCGATACA
1 TGTATCAATACAATGTACCATGTATCGATACA
545602 AATAGTGATA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 28 0.97
34 1 0.03
ACGTcount: A:0.35, C:0.18, G:0.12, T:0.34
Consensus pattern (33 bp):
TGTATCAATACAATGTACCATGTATCGATACAT
Found at i:549224 original size:236 final size:234
Alignment explanation
Indices: 548853--549573 Score: 739
Period size: 236 Copynumber: 3.1 Consensus size: 234
548843 CCAATCGTGG
* * * * *
548853 TTTTATTTCTAAAATACTGATTTTTCGCCATCGAGGATACTCCAACCCC-TTATTTCAAAGGGGA
1 TTTTATTTCTAAAATATTGATTTTTTGACATCGAGGATACTCTAACCCCGTTATTTCATAGGGGA
** * *
548917 TACTCCAA-CCTTAGTTTTATTTCT-AAACACCGATTTTTCATAATCAGGGATACTCTAACCCCG
66 TACTCCAACCCCGA-TTTTATTTCTAAAACA-CGATTTTTCATCATCAGGGATACTCCAACCCCG
* *
548980 TTATTTTCGAGGGGACGTTCCAACTCCGGTTTTATTTCTAAAATATCAATTTTCCACCATTG-GG
129 TTATTTTCGAGGGGAC-TTCCAACTCCGGTTTTATTTCTAAAATATCGATTTTTCACCATTGAGG
*
549044 ATACTCCAACCCTGTTATTTTTGATGGAATACTTCAACCCCGA
193 ATACTCCAACCCTGTTATTTTTGAAGG-ATACTTCAACCCCGA
**
549087 TTTTATTTCTAAAATATTGATTTTTTGACATCGACAATACTCTAACCCCGTTATTTCCATA-GGG
1 TTTTATTTCTAAAATATTGATTTTTTGACATCGAGGATACTCTAACCCCGTTATTT-CATAGGGG
* *
549151 ATACTCCAACCCCGATTTTATTTCTAAAATATCAATTTTTCATCATCAGGGATACTCCAACCCCG
65 ATACTCCAACCCCGATTTTATTTCTAAAACA-CGATTTTTCATCATCAGGGATACTCCAACCCCG
* ** * *
549216 TTATTTTCGAGGGCATACTT-CAAC-CCTAATTTTATTTCTAAAATACCGATTTTTCACCATCGA
129 TTATTTTCGAGGG--GACTTCCAACTCC-GGTTTTATTTCTAAAATATCGATTTTTCACCATTGA
* * * * *
549279 GGATCCTTCAA-CCTCGTTATTTTTGAAGGATAC-TCTAATCTCGG
191 GGATACTCCAACCCT-GTTATTTTTGAAGGATACTTC-AACCCCGA
* * * * * *
549323 TTTTATTTCTAAAACATCGA-TTTTTCACCATCGGGGACACTCTAACCCCGTTATTT-TTGAGGG
1 TTTTATTTCTAAAATATTGATTTTTTGA-CATCGAGGATACTCTAACCCCGTTATTTCAT-AGGG
* ** * * * *
549386 GATACTCTAACATCGGTTTTTTTTCTAAAACACTGATTTTTCACCATCGGGGATACTCCAACCCC
64 GATACTCCAACCCCGATTTTATTTCTAAAACAC-GATTTTTCATCATCAGGGATACTCCAACCCC
* * * * *
549451 ATTAATTTT-GAGGGGACACTCCAACTCTGGTTTTATTTCTAAACTATCGATTTTTCACCATTGT
128 GTT-ATTTTCGAGGGGAC-TTCCAACTCCGGTTTTATTTCTAAAATATCGATTTTTCACCATTGA
** * * **
549515 GGATACTCCAACCCCATTA-TTTTCAAGGGTATACTCCAACCCTAA
191 GGATACTCCAACCCTGTTATTTTTGAA-GG-ATACTTCAACCCCGA
549560 TTTTATTTCTAAAA
1 TTTTATTTCTAAAA
549574 CACCGATTTT
Statistics
Matches: 400, Mismatches: 65, Indels: 41
0.79 0.13 0.08
Matches are distributed among these distances:
234 46 0.12
235 47 0.12
236 251 0.63
237 53 0.13
238 3 0.01
ACGTcount: A:0.27, C:0.24, G:0.12, T:0.37
Consensus pattern (234 bp):
TTTTATTTCTAAAATATTGATTTTTTGACATCGAGGATACTCTAACCCCGTTATTTCATAGGGGA
TACTCCAACCCCGATTTTATTTCTAAAACACGATTTTTCATCATCAGGGATACTCCAACCCCGTT
ATTTTCGAGGGGACTTCCAACTCCGGTTTTATTTCTAAAATATCGATTTTTCACCATTGAGGATA
CTCCAACCCTGTTATTTTTGAAGGATACTTCAACCCCGA
Found at i:549581 original size:79 final size:78
Alignment explanation
Indices: 548775--549607 Score: 690
Period size: 79 Copynumber: 10.6 Consensus size: 78
548765 TTCATTGATA
* ** *
548775 TTTTATTTCTAAAACATGGA-TTTTCTACCATCGGGGATACT-CTGCCCCATTA-TTTCTGAGGG
1 TTTTATTTCTAAAACATCGATTTTTC-ACCATC-GGGATACTCCAACCCCGTTATTTTC-GAGGG
* * *
548837 GATATTCCAATCGTGG
63 GATACTCCAACCCTGG
* * *
548853 TTTTATTTCTAAAATA-CTGATTTTTCGCCATCGAGGATACTCCAACCCC-TTA-TTTCAAAGGG
1 TTTTATTTCTAAAACATC-GATTTTTCACCATCG-GGATACTCCAACCCCGTTATTTTC-GAGGG
* *
548915 GATACTCCAACCTTAG
63 GATACTCCAACCCTGG
* ** *
548931 TTTTATTTCT-AAACACCGATTTTTCATAATCAGGGATACTCTAACCCCGTTATTTTCGAGGGGA
1 TTTTATTTCTAAAACATCGATTTTTCACCATC-GGGATACTCCAACCCCGTTATTTTCGAGGGGA
***
548995 CGTTCCAACTCC-GG
65 TACTCCAAC-CCTGG
* * * * * * * *
549009 TTTTATTTCTAAAATATCAATTTTCCACCATTGGGATACTCCAACCCTGTTATTTTTGATGGAAT
1 TTTTATTTCTAAAACATCGATTTTTCACCATCGGGATACTCCAACCCCGTTATTTTCGAGGGGAT
* * *
549074 ACTTCAACCCCGA
66 ACTCCAACCCTGG
* * * ** * * *
549087 TTTTATTTCTAAAATATTGATTTTTTGA-CATCGACAATACTCTAACCCCGTTA-TTTCCATAGG
1 TTTTATTTCTAAAACATCGA-TTTTTCACCATCG-GGATACTCCAACCCCGTTATTTTCGA-GGG
* *
549150 GATACTCCAACCCCGA
63 GATACTCCAACCCTGG
* * * *
549166 TTTTATTTCTAAAATATCAATTTTTCATCATCAGGGATACTCCAACCCCGTTATTTTCGAGGGCA
1 TTTTATTTCTAAAACATCGATTTTTCACCATC-GGGATACTCCAACCCCGTTATTTTCGAGGGGA
* **
549231 TACTTCAACCCTAA
65 TACTCCAACCCTGG
* * * * * * *
549245 TTTTATTTCTAAAATACCGATTTTTCACCATCGAGGATCCTTCAACCTCGTTATTTTTGA-AGGA
1 TTTTATTTCTAAAACATCGATTTTTCACCATCG-GGATACTCCAACCCCGTTATTTTCGAGGGGA
* *
549309 TACTCTAA-TCTCGG
65 TACTCCAACCCT-GG
* * *
549323 TTTTATTTCTAAAACATCGATTTTTCACCATCGGGGACACTCTAACCCCGTTATTTTTGAGGGGA
1 TTTTATTTCTAAAACATCGATTTTTCACCATC-GGGATACTCCAACCCCGTTATTTTCGAGGGGA
* *
549388 TACTCTAA-CATCGG
65 TACTCCAACCCT-GG
* *
549402 TTTTTTTTCTAAAACA-CTGATTTTTCACCATCGGGGATACTCCAACCCCATTAATTTT-GAGGG
1 TTTTATTTCTAAAACATC-GATTTTTCACCATC-GGGATACTCCAACCCCGTT-ATTTTCGAGGG
* *
549465 GACACTCCAACTCTGG
63 GATACTCCAACCCTGG
* * * *
549481 TTTTATTTCT-AAACTATCGATTTTTCACCATTGTGGATACTCCAACCCCATTATTTTCAAGGGT
1 TTTTATTTCTAAAAC-ATCGATTTTTCACCATCG-GGATACTCCAACCCCGTTATTTTCGAGGGG
**
549545 ATACTCCAACCCTAA
64 ATACTCCAACCCTGG
* * *
549560 TTTTATTTCTAAAACACCGATTTTCCACCATTAGGGATACTCCAACCC
1 TTTTATTTCTAAAACATCGATTTTTCACCA-TCGGGATACTCCAACCC
549608 TATTATCTCC
Statistics
Matches: 617, Mismatches: 108, Indels: 59
0.79 0.14 0.08
Matches are distributed among these distances:
77 34 0.06
78 226 0.37
79 338 0.55
80 19 0.03
ACGTcount: A:0.27, C:0.24, G:0.13, T:0.36
Consensus pattern (78 bp):
TTTTATTTCTAAAACATCGATTTTTCACCATCGGGATACTCCAACCCCGTTATTTTCGAGGGGAT
ACTCCAACCCTGG
Found at i:551319 original size:52 final size:52
Alignment explanation
Indices: 551245--551345 Score: 148
Period size: 52 Copynumber: 1.9 Consensus size: 52
551235 CCAAACGAAG
* *
551245 TCCACATTAGCTAGCACATGTATAGAGAGTTCAAGCCTTATAAAATCCAAAA
1 TCCACATTAGCTAGCACATGTATAGAGAGGTCAAGCCCTATAAAATCCAAAA
* * * *
551297 TCCATATTAGCTGGCACCTGTATAGGGAGGTCAAGCCCTATAAAATCCA
1 TCCACATTAGCTAGCACATGTATAGAGAGGTCAAGCCCTATAAAATCCA
551346 TGTCTATTCT
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
52 43 1.00
ACGTcount: A:0.36, C:0.23, G:0.17, T:0.25
Consensus pattern (52 bp):
TCCACATTAGCTAGCACATGTATAGAGAGGTCAAGCCCTATAAAATCCAAAA
Found at i:551473 original size:51 final size:51
Alignment explanation
Indices: 551418--551516 Score: 126
Period size: 51 Copynumber: 1.9 Consensus size: 51
551408 GCAGTCGTGT
* *
551418 AGGGAGGTCAAGCCCTATGGAATCCAAGTCCACACTAGCTGGCACTTGCAC
1 AGGGAGGTCAAGCACTATAGAATCCAAGTCCACACTAGCTGGCACTTGCAC
* * * * * *
551469 AGGGAGTTCAAGCATTATATAATCTAAGTTCACACTAGTTGGCACTTG
1 AGGGAGGTCAAGCACTATAGAATCCAAGTCCACACTAGCTGGCACTTG
551517 TATAAGACAG
Statistics
Matches: 40, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
51 40 1.00
ACGTcount: A:0.29, C:0.23, G:0.23, T:0.24
Consensus pattern (51 bp):
AGGGAGGTCAAGCACTATAGAATCCAAGTCCACACTAGCTGGCACTTGCAC
Found at i:556779 original size:102 final size:102
Alignment explanation
Indices: 556601--556788 Score: 227
Period size: 102 Copynumber: 1.8 Consensus size: 102
556591 GACAGATAAT
* * * * ***
556601 TTTGACAAAGAAAAAGTTCAAACCTTGATAAATTTCAAAGAGTGTGGTTGGAGTATTCTTTTGAA
1 TTTGACAAAGAAAAAGTTCAAACCTTGACAAATTTCAAAGAGCGAGGTTAGAGTATTCCCCTGAA
*
556666 AAGATGGGGTTGGAGTATCCCGATTAAGGACAAATAC
66 AAGATGAGGTTGGAGTATCCCGATTAAGGACAAATAC
* * *
556703 TTTGACAAAGGAAAAGTTCAAACCTTGACAGATTTCTAAGAGCGAGGTTAGAGTA-TCCCCT-AC
1 TTTGACAAAGAAAAAGTTCAAACCTTGACAAATTTCAAAGAGCGAGGTTAGAGTATTCCCCTGA-
* *
556766 AAAGGTCGAGGTTGTAGTATCCC
65 AAAGAT-GAGGTTGGAGTATCCC
556789 CGTGAATAAA
Statistics
Matches: 71, Mismatches: 13, Indels: 4
0.81 0.15 0.05
Matches are distributed among these distances:
100 1 0.01
101 8 0.11
102 62 0.87
ACGTcount: A:0.35, C:0.14, G:0.23, T:0.28
Consensus pattern (102 bp):
TTTGACAAAGAAAAAGTTCAAACCTTGACAAATTTCAAAGAGCGAGGTTAGAGTATTCCCCTGAA
AAGATGAGGTTGGAGTATCCCGATTAAGGACAAATAC
Found at i:563795 original size:14 final size:15
Alignment explanation
Indices: 563768--563797 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
563758 ACTACATATT
563768 ATAACAAGGAAATAA
1 ATAACAAGGAAATAA
563783 ATAACAA-GAAATAA
1 ATAACAAGGAAATAA
563797 A
1 A
563798 AAAAATCAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.53
15 7 0.47
ACGTcount: A:0.70, C:0.07, G:0.10, T:0.13
Consensus pattern (15 bp):
ATAACAAGGAAATAA
Found at i:564907 original size:58 final size:58
Alignment explanation
Indices: 564845--565073 Score: 180
Period size: 58 Copynumber: 4.0 Consensus size: 58
564835 TCTAAAAAGT
* *
564845 ATGAAAATGCACAAAAGTCCCTAGATTATAAAAAATGACCT-AATTAACCCTAACATAC
1 ATGAAAATGCACAAAAGTCCCTAGATCATAAAAAATGACCTAAATT-ACCCCAACATAC
* * * * * *
564903 ATGAAATTGCATATAAGTCCTTAGATCATGAAAAATGACTTAAATTACCCCAACATAC
1 ATGAAAATGCACAAAAGTCCCTAGATCATAAAAAATGACCTAAATTACCCCAACATAC
* * * * ** * * *
564961 ATG-AAATGTACAAAAGTCCCCAAATAATGGAAAATAACCTAAATGA-CCCAACATTC
1 ATGAAAATGCACAAAAGTCCCTAGATCATAAAAAATGACCTAAATTACCCCAACATAC
* * ** * * *
565017 AT-AAAATTGCATAGAAGTCTTTAGATCATTAAAAAA-AACCTAAATGACCCTAACATA
1 ATGAAAA-TGCACAAAAGTCCCTAGATCA-TAAAAAATGACCTAAATTACCCCAACATA
565074 TATGCAATTG
Statistics
Matches: 133, Mismatches: 33, Indels: 10
0.76 0.19 0.06
Matches are distributed among these distances:
56 14 0.11
57 55 0.41
58 60 0.45
59 4 0.03
ACGTcount: A:0.47, C:0.19, G:0.10, T:0.24
Consensus pattern (58 bp):
ATGAAAATGCACAAAAGTCCCTAGATCATAAAAAATGACCTAAATTACCCCAACATAC
Found at i:565035 original size:57 final size:56
Alignment explanation
Indices: 564875--565035 Score: 153
Period size: 57 Copynumber: 2.8 Consensus size: 56
564865 CTAGATTATA
* ** * *
564875 AAAAATGACCTAATTAACCCTAACATACATGAAATTGCATATAAGTCCTTAGATCATG
1 AAAAATGACCTAAATAACCC-AACATACATGAAATTGCATA-AAGTCCCCAAATAATG
* * *
564933 AAAAATGACTTAAATTACCCCAACATACATGAAATGTACA-AAAGTCCCCAAATAATG
1 AAAAATGACCTAAA-TAACCCAACATACATGAAAT-TGCATAAAGTCCCCAAATAATG
* * * * *
564990 GAAAATAACCTAAATGACCCAACATTCATAAAATTGCATAGAAGTC
1 AAAAATGACCTAAATAACCCAACATACATGAAATTGCATA-AAGTC
565036 TTTAGATCAT
Statistics
Matches: 83, Mismatches: 16, Indels: 9
0.77 0.15 0.08
Matches are distributed among these distances:
55 3 0.04
56 17 0.20
57 28 0.34
58 27 0.33
59 8 0.10
ACGTcount: A:0.47, C:0.20, G:0.10, T:0.24
Consensus pattern (56 bp):
AAAAATGACCTAAATAACCCAACATACATGAAATTGCATAAAGTCCCCAAATAATG
Found at i:565061 original size:114 final size:115
Alignment explanation
Indices: 564849--565073 Score: 272
Period size: 114 Copynumber: 2.0 Consensus size: 115
564839 AAAAGTATGA
* * * * * *
564849 AAATGCACAAAAGTCCCTAGATTATAAAAAATGACCTAATTAACCCTAACATACATGAAATTGCA
1 AAATGCACAAAAGTCCCCAAATAATAAAAAATAACCTAAATAACCCTAACATACATAAAATTGCA
* ** * *
564914 TATAAGTCCTTAGATCATGAAAAATGACTTAAATTACCCCAACATACATG
66 TAGAAGTCCTTAGATCATGAAAAAAAACCTAAATGACCCCAACATACATG
* ** * *
564964 AAATGTACAAAAGTCCCCAAATAATGGAAAATAACCTAAATGACCC-AACATTCATAAAATTGCA
1 AAATGCACAAAAGTCCCCAAATAATAAAAAATAACCTAAATAACCCTAACATACATAAAATTGCA
* * *
565028 TAGAAGTCTTTAGATCATTAAAAAAAACCTAAATGACCCTAACATA
66 TAGAAGTCCTTAGATCATGAAAAAAAACCTAAATGACCCCAACATA
565074 TATGCAATTG
Statistics
Matches: 91, Mismatches: 19, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
114 54 0.59
115 37 0.41
ACGTcount: A:0.47, C:0.20, G:0.09, T:0.24
Consensus pattern (115 bp):
AAATGCACAAAAGTCCCCAAATAATAAAAAATAACCTAAATAACCCTAACATACATAAAATTGCA
TAGAAGTCCTTAGATCATGAAAAAAAACCTAAATGACCCCAACATACATG
Found at i:565146 original size:20 final size:20
Alignment explanation
Indices: 565118--565160 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
565108 AGTAATGGAG
* *
565118 AATAACTAAAATGTCATAAA
1 AATAACTAAAATGACACAAA
*
565138 AATACCTAAAATGACACAAA
1 AATAACTAAAATGACACAAA
565158 AAT
1 AAT
565161 CCTTAAGGCA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.60, C:0.14, G:0.05, T:0.21
Consensus pattern (20 bp):
AATAACTAAAATGACACAAA
Found at i:566604 original size:21 final size:21
Alignment explanation
Indices: 566571--566611 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
566561 ACAATACATC
*
566571 TGCAATTATATCGATACAACA
1 TGCAATTACATCGATACAACA
* *
566592 TGCAATTGCATCGATGCAAC
1 TGCAATTACATCGATACAAC
566612 TGTAATCCAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.37, C:0.22, G:0.15, T:0.27
Consensus pattern (21 bp):
TGCAATTACATCGATACAACA
Found at i:567765 original size:20 final size:20
Alignment explanation
Indices: 567740--567779 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
567730 CGAAGAGACC
567740 AAAACATTCCCTAAAGTGCA
1 AAAACATTCCCTAAAGTGCA
567760 AAAACATTCCCTAAAGTGCA
1 AAAACATTCCCTAAAGTGCA
567780 CCTTTGACAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.45, C:0.25, G:0.10, T:0.20
Consensus pattern (20 bp):
AAAACATTCCCTAAAGTGCA
Found at i:570031 original size:22 final size:22
Alignment explanation
Indices: 569990--570050 Score: 61
Period size: 22 Copynumber: 2.7 Consensus size: 22
569980 ATAAAAAAGA
* *
569990 AAAAAAAAAGAGAAAGAAAGG-C
1 AAAAAAATAGA-AAAAAAAGGTC
*
570012 AAGAAAAATAGAAAAAAAAGGTG
1 AA-AAAAATAGAAAAAAAAGGTC
*
570035 AAAAAAATAGCAAAAA
1 AAAAAAATAGAAAAAA
570051 CTAAGCTAGC
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
22 23 0.70
23 10 0.30
ACGTcount: A:0.74, C:0.03, G:0.18, T:0.05
Consensus pattern (22 bp):
AAAAAAATAGAAAAAAAAGGTC
Found at i:570350 original size:11 final size:11
Alignment explanation
Indices: 570334--570358 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
570324 TTGTTTCATG
570334 CTTGATTTAGC
1 CTTGATTTAGC
570345 CTTGATTTAGC
1 CTTGATTTAGC
570356 CTT
1 CTT
570359 CATGATCCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.16, C:0.20, G:0.16, T:0.48
Consensus pattern (11 bp):
CTTGATTTAGC
Found at i:571131 original size:156 final size:154
Alignment explanation
Indices: 570833--571416 Score: 570
Period size: 156 Copynumber: 3.7 Consensus size: 154
570823 ATATTAATCA
* *
570833 TTTTTTAATCTTTTATATTCCTATGGAGGTCCGTAGGGGTATAAAAGATTTCAAAAACTTTTCGT
1 TTTTTTAATCTTTTATATTCCTATGAAGGTCCATAGGGGTATAAAAGATTTCAAAAACTTTTCGT
* * *
570898 ATCTTTTCGGGTTTTCATTAAGATACGAAATGGTATTTTTCAAAAACAAATAAATTAAATTAAAT
66 ATCTTTTTGGGTTTCCATTAAGATACGAAATGGTATTTTTCGAAAACAAATAAATTAAATTAAAT
*
570963 TAACACTCTCATAATTGAATAAAT
131 TAACACTTTCATAATTGAATAAAT
*
570987 GTTTTTCTAATCTTTTATATTCCTATGAAGGTCTATAGGGGTATAAAAGATTTCAAAAACTTTT-
1 -TTTTT-TAATCTTTTATATTCCTATGAAGGTCCATAGGGGTATAAAAGATTTCAAAAACTTTTC
* * * * *
571051 GATATCATTTTGGGTTTCCAATACAG-TACGAAAAGGTATTTTTCGAAAGCAAATAAATAAAATT
64 G-TATCTTTTTGGGTTTCCATTA-AGATACGAAATGGTATTTTTCGAAAACAAATAAATTAAATT
* ** *
571115 AAATTAATACTTTCATAA-CCAAGAGGAACTT
127 AAATTAACACTTTCATAATTGAATA--AA--T
* * *** *
571146 TAATTTTTTATCTTTTATATTCTTAT-AAGGGTTGGTAGGGGGTATAAAAGATTTTAAAAACTTT
1 T--TTTTTAATCTTTTATATTCCTATGAA-GGTCCATA-GGGGTATAAAAGATTTCAAAAACTTT
* * *
571210 TCGTATCTTTTTGGGCTTCCATTAAGATACGAAATGATA-TTTTCGAAATA-AAACAAATTTAAA
62 TCGTATCTTTTTGGGTTTCCATTAAGATACGAAATGGTATTTTTCGAAA-ACAAATAAA-TTAAA
* *
571273 -TAAATTAACACTTTCGTAATTAAGGCAAACTCTAATCACC
125 TTAAATTAACACTTTCATAATT---G--AA---TAA--A-T
** * * *
571313 TTTTTTAATCTTTTATATTCCTATGGTGGTCCAAAGGGGTATAAAAAATTTCAAAAACTTTTTGT
1 TTTTTTAATCTTTTATATTCCTATGAAGGTCCATAGGGGTATAAAAGATTTCAAAAACTTTTCGT
* * * *
571378 ATCTTTTTGAGTTTCCATTATGGTACGAAATGATATTTT
66 ATCTTTTTGGGTTTCCATTAAGATACGAAATGGTATTTT
571417 CGAGAAAGAG
Statistics
Matches: 349, Mismatches: 52, Indels: 46
0.78 0.12 0.10
Matches are distributed among these distances:
155 9 0.03
156 121 0.35
157 4 0.01
158 3 0.01
159 57 0.16
160 62 0.18
161 1 0.00
164 58 0.17
165 30 0.09
166 1 0.00
167 1 0.00
168 2 0.01
ACGTcount: A:0.35, C:0.12, G:0.13, T:0.40
Consensus pattern (154 bp):
TTTTTTAATCTTTTATATTCCTATGAAGGTCCATAGGGGTATAAAAGATTTCAAAAACTTTTCGT
ATCTTTTTGGGTTTCCATTAAGATACGAAATGGTATTTTTCGAAAACAAATAAATTAAATTAAAT
TAACACTTTCATAATTGAATAAAT
Found at i:572633 original size:20 final size:20
Alignment explanation
Indices: 572608--572661 Score: 83
Period size: 20 Copynumber: 2.7 Consensus size: 20
572598 CTACCACTGT
*
572608 TTGTATCGATACATGGT-ATA
1 TTGTATCGATACATGATGA-A
572628 TTGTATCGATACATGATGAA
1 TTGTATCGATACATGATGAA
572648 TTGTATCGATACAT
1 TTGTATCGATACAT
572662 TACTTGTAAC
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
20 31 0.97
21 1 0.03
ACGTcount: A:0.31, C:0.11, G:0.19, T:0.39
Consensus pattern (20 bp):
TTGTATCGATACATGATGAA
Found at i:578835 original size:13 final size:13
Alignment explanation
Indices: 578817--578856 Score: 62
Period size: 13 Copynumber: 3.1 Consensus size: 13
578807 AACCCAGATG
*
578817 TTGTATCGATATA
1 TTGTATCGATACA
578830 TTGTATCGATACA
1 TTGTATCGATACA
*
578843 TTGTAACGATACA
1 TTGTATCGATACA
578856 T
1 T
578857 GGGTTACTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.33, C:0.12, G:0.15, T:0.40
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:581413 original size:33 final size:32
Alignment explanation
Indices: 581371--581434 Score: 92
Period size: 32 Copynumber: 2.0 Consensus size: 32
581361 ACACCCAGAA
* *
581371 GTATCGATACATTATGCTTTCTATCGATACATT
1 GTATCGATACATGAT-CATTCTATCGATACATT
*
581404 GTATCGATACATGATCATTGTATCGATACAT
1 GTATCGATACATGATCATTCTATCGATACAT
581435 GGACAATTGT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 14 0.50
33 14 0.50
ACGTcount: A:0.30, C:0.17, G:0.14, T:0.39
Consensus pattern (32 bp):
GTATCGATACATGATCATTCTATCGATACATT
Found at i:581424 original size:19 final size:18
Alignment explanation
Indices: 581399--581456 Score: 89
Period size: 19 Copynumber: 3.1 Consensus size: 18
581389 TTCTATCGAT
581399 ACATTGTATCGATACATG
1 ACATTGTATCGATACATG
581417 ATCATTGTATCGATACATGG
1 A-CATTGTATCGATACAT-G
581437 ACAATTGTATCGATACATG
1 AC-ATTGTATCGATACATG
581456 A
1 A
581457 AACTAGCAGT
Statistics
Matches: 37, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
18 1 0.03
19 19 0.51
20 17 0.46
ACGTcount: A:0.34, C:0.16, G:0.17, T:0.33
Consensus pattern (18 bp):
ACATTGTATCGATACATG
Found at i:581445 original size:20 final size:20
Alignment explanation
Indices: 581400--581455 Score: 89
Period size: 20 Copynumber: 2.9 Consensus size: 20
581390 TCTATCGATA
581400 CATTGTATCGATACAT-GAT
1 CATTGTATCGATACATGGAT
581419 CATTGTATCGATACATGGA-
1 CATTGTATCGATACATGGAT
581438 CAATTGTATCGATACATG
1 C-ATTGTATCGATACATG
581456 AAACTAGCAG
Statistics
Matches: 35, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
19 17 0.49
20 18 0.51
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.34
Consensus pattern (20 bp):
CATTGTATCGATACATGGAT
Found at i:581521 original size:13 final size:13
Alignment explanation
Indices: 581503--581527 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
581493 TACATGGTAC
581503 ATTGTATCGATAT
1 ATTGTATCGATAT
581516 ATTGTATCGATA
1 ATTGTATCGATA
581528 CATGATGAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.08, G:0.16, T:0.44
Consensus pattern (13 bp):
ATTGTATCGATAT
Found at i:581526 original size:33 final size:33
Alignment explanation
Indices: 581484--581552 Score: 104
Period size: 33 Copynumber: 2.1 Consensus size: 33
581474 CTACCACTGT
* *
581484 TTGTATCGATACATGGT-ACATTGTATCGATATA
1 TTGTATCGATACATGATGA-ATTGTATCGATACA
581517 TTGTATCGATACATGATGAATTGTATCGATACA
1 TTGTATCGATACATGATGAATTGTATCGATACA
581550 TTG
1 TTG
581553 CTTGTAACGA
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
33 32 0.97
34 1 0.03
ACGTcount: A:0.30, C:0.12, G:0.19, T:0.39
Consensus pattern (33 bp):
TTGTATCGATACATGATGAATTGTATCGATACA
Found at i:586349 original size:21 final size:21
Alignment explanation
Indices: 586320--586373 Score: 67
Period size: 20 Copynumber: 2.6 Consensus size: 21
586310 GGTGGTTTTA
586320 TATCAATACATTTCGAC-CATG
1 TATCAATACATTTC-ACTCATG
* *
586341 TATCGATACA-TTCACTTATG
1 TATCAATACATTTCACTCATG
586361 TATCAATACATTT
1 TATCAATACATTT
586374 AATGTTTGTA
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
19 2 0.07
20 15 0.54
21 11 0.39
ACGTcount: A:0.33, C:0.20, G:0.07, T:0.39
Consensus pattern (21 bp):
TATCAATACATTTCACTCATG
Found at i:592989 original size:40 final size:40
Alignment explanation
Indices: 592932--593055 Score: 151
Period size: 43 Copynumber: 3.0 Consensus size: 40
592922 AGGTTTAAAG
* *
592932 AAAAAAAATTTTGTTTTAGTACTCCCCCTTAATGACTACTC
1 AAAAAAAA-TTTCTTTTAGTACTCCCCCTTAATAACTACTC
* *
592973 AAAAAAAA-TTCATTTTAGTACTCTCCCTTAATAACTATTCCCC
1 AAAAAAAATTTC-TTTTAGTACTCCCCCTTAATAACTA---CTC
*
593016 AAAAAAAATTTCTTTTAGTACTCCCCTTTAATAACTACTC
1 AAAAAAAATTTCTTTTAGTACTCCCCCTTAATAACTACTC
593056 CCCTCTTTTT
Statistics
Matches: 71, Mismatches: 7, Indels: 11
0.80 0.08 0.12
Matches are distributed among these distances:
39 2 0.03
40 25 0.35
41 8 0.11
43 33 0.46
44 3 0.04
ACGTcount: A:0.36, C:0.23, G:0.04, T:0.36
Consensus pattern (40 bp):
AAAAAAAATTTCTTTTAGTACTCCCCCTTAATAACTACTC
Found at i:594918 original size:3 final size:3
Alignment explanation
Indices: 594912--594946 Score: 52
Period size: 3 Copynumber: 11.7 Consensus size: 3
594902 GTCAACTTCT
* *
594912 TCA TCA TTA TCA TCA TCA TCA TCA TCT TCA TCA TC
1 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TC
594947 TTTGACGGTT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.29, C:0.31, G:0.00, T:0.40
Consensus pattern (3 bp):
TCA
Found at i:594946 original size:9 final size:9
Alignment explanation
Indices: 594909--594948 Score: 55
Period size: 9 Copynumber: 4.4 Consensus size: 9
594899 CGAGTCAACT
594909 TCTTCATCA
1 TCTTCATCA
594918 T-TATCATCA
1 TCT-TCATCA
*
594927 TCATCATCA
1 TCTTCATCA
594936 TCTTCATCA
1 TCTTCATCA
594945 TCTT
1 TCTT
594949 TGACGGTTGA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
8 1 0.04
9 26 0.96
ACGTcount: A:0.25, C:0.30, G:0.00, T:0.45
Consensus pattern (9 bp):
TCTTCATCA
Found at i:596418 original size:13 final size:13
Alignment explanation
Indices: 596400--596425 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
596390 CAATTTTTTG
596400 TGTATCGATACAT
1 TGTATCGATACAT
596413 TGTATCGATACAT
1 TGTATCGATACAT
596426 ACTTGGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:597180 original size:75 final size:75
Alignment explanation
Indices: 597093--597247 Score: 274
Period size: 75 Copynumber: 2.1 Consensus size: 75
597083 ATAAAAATAA
597093 TTTTAACAAATTCGTACATTCTCCCCCTCAATAAAGTGATTCACGCATTCTCCACTTTTATTAAT
1 TTTTAACAAATTCGTACATTCTCCCCCTCAATAAAGTGATTCACGCATTCTCCACTTTTATTAAT
*
597158 ATGTCTCCCC
66 AAGTCTCCCC
* *
597168 TTTTAACAAATTCGTACATTCTCCCCCTTAATAAAGTGATTCACGCATTCTCCCCTTTTATTAAT
1 TTTTAACAAATTCGTACATTCTCCCCCTCAATAAAGTGATTCACGCATTCTCCACTTTTATTAAT
597233 AAGTCTCCCC
66 AAGTCTCCCC
*
597243 CTTTA
1 TTTTA
597248 TCAAGCAATT
Statistics
Matches: 76, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
75 76 1.00
ACGTcount: A:0.26, C:0.29, G:0.06, T:0.38
Consensus pattern (75 bp):
TTTTAACAAATTCGTACATTCTCCCCCTCAATAAAGTGATTCACGCATTCTCCACTTTTATTAAT
AAGTCTCCCC
Found at i:597272 original size:22 final size:22
Alignment explanation
Indices: 597244--597287 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
597234 AGTCTCCCCC
597244 TTTATCAAGCAATTCATATCAA
1 TTTATCAAGCAATTCATATCAA
597266 TTTATCAAGCAATTCATATCAA
1 TTTATCAAGCAATTCATATCAA
597288 AAATTTATTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.41, C:0.18, G:0.05, T:0.36
Consensus pattern (22 bp):
TTTATCAAGCAATTCATATCAA
Found at i:602107 original size:52 final size:52
Alignment explanation
Indices: 602016--602114 Score: 137
Period size: 52 Copynumber: 1.9 Consensus size: 52
602006 CCCGAAATAT
* **
602016 GAAAATTTGCCTGCATGTATCGATACATTATAAAATGTATCGATACATCTGG
1 GAAAATATGCCTGCATGTATCGATACAAGATAAAATGTATCGATACATCTGG
* *
602068 GAAAATATGCCTGCATGTATCGATACAAAGAT-TAGTGTATCGATACA
1 GAAAATATGCCTGCATGTATCGATAC-AAGATAAAATGTATCGATACA
602115 GTGTATCGAT
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
52 38 0.93
53 3 0.07
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.30
Consensus pattern (52 bp):
GAAAATATGCCTGCATGTATCGATACAAGATAAAATGTATCGATACATCTGG
Found at i:602119 original size:13 final size:13
Alignment explanation
Indices: 602101--602127 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
602091 TACAAAGATT
602101 AGTGTATCGATAC
1 AGTGTATCGATAC
602114 AGTGTATCGATAC
1 AGTGTATCGATAC
602127 A
1 A
602128 TTTGAGTAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.33, C:0.15, G:0.22, T:0.30
Consensus pattern (13 bp):
AGTGTATCGATAC
Found at i:602205 original size:33 final size:33
Alignment explanation
Indices: 602168--602234 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
602158 AGTAGCTTAA
602168 ATTGTATCGATACAAAAAAATATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
* ***
602201 ATTGTATCGATACAACACTTTATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
602234 A
1 A
602235 AATCGTTGAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.40, C:0.15, G:0.12, T:0.33
Consensus pattern (33 bp):
ATTGTATCGATACAAAAAAATATGTATCGATAC
Found at i:602208 original size:13 final size:13
Alignment explanation
Indices: 602190--602214 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
602180 CAAAAAAATA
602190 TGTATCGATACAT
1 TGTATCGATACAT
602203 TGTATCGATACA
1 TGTATCGATACA
602215 ACACTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:602652 original size:13 final size:13
Alignment explanation
Indices: 602634--602672 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
602624 ATAATCCCCC
*
602634 TGTATCGATACAG
1 TGTATCGATACAA
602647 TGTATCGATACAA
1 TGTATCGATACAA
602660 TGTATCGATACAA
1 TGTATCGATACAA
602673 AGAAAAATGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:610310 original size:13 final size:13
Alignment explanation
Indices: 610292--610318 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
610282 TATTATGAAC
610292 ATGTATCGATACA
1 ATGTATCGATACA
610305 ATGTATCGATACA
1 ATGTATCGATACA
610318 A
1 A
610319 AGCATAATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:613227 original size:30 final size:30
Alignment explanation
Indices: 613192--613265 Score: 87
Period size: 30 Copynumber: 2.5 Consensus size: 30
613182 TTTGATTGAG
*
613192 TATAGTCCAA-TGATGAAAGACTTGACCAAA
1 TATAGT-CAAGTGAGGAAAGACTTGACCAAA
* *
613222 TATAGTTAAGTGAGGAAAGACTTGACCAAG
1 TATAGTCAAGTGAGGAAAGACTTGACCAAA
* *
613252 TATAGCCGAGTGAG
1 TATAGTCAAGTGAG
613266 AGTGATGCAC
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
29 2 0.05
30 35 0.95
ACGTcount: A:0.39, C:0.14, G:0.24, T:0.23
Consensus pattern (30 bp):
TATAGTCAAGTGAGGAAAGACTTGACCAAA
Found at i:613503 original size:90 final size:88
Alignment explanation
Indices: 613377--613583 Score: 258
Period size: 90 Copynumber: 2.3 Consensus size: 88
613367 AATGGCTAAA
* *
613377 GAAA-AGGGATATGATTGGGGAATGTGTGAGCTGCACCTTGCCCAAAGGAAACTAGGCTTTGTGA
1 GAAAGAGGGATATGATT-GGGAATGTGTGGGCTGCACCATGCCCAAAGGAAACTAGGCTTTGTGA
*
613441 TGCATCAACACCATCTAGTGGTT-A
65 T-CATCAACACCATCTAGTGGTTGG
* * * * *
613465 GATGAAG-GGGATATGATTAGGGAATATGTGGGTTGCACCATGCCCCAAGGAAATTGGGCTTTGT
1 GA--AAGAGGGATATGATT-GGGAATGTGTGGGCTGCACCATGCCCAAAGGAAACTAGGCTTTGT
* *
613529 GATCATTAATACCATCTAGTGGTTGG
63 GATCATCAACACCATCTAGTGGTTGG
613555 GAAAGAGGGATATGATTGGGAATGTGTGG
1 GAAAGAGGGATATGATTGGGAATGTGTGG
613584 ACTCCAAATT
Statistics
Matches: 102, Mismatches: 12, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
88 16 0.16
89 30 0.29
90 56 0.55
ACGTcount: A:0.29, C:0.13, G:0.32, T:0.27
Consensus pattern (88 bp):
GAAAGAGGGATATGATTGGGAATGTGTGGGCTGCACCATGCCCAAAGGAAACTAGGCTTTGTGAT
CATCAACACCATCTAGTGGTTGG
Found at i:614025 original size:88 final size:89
Alignment explanation
Indices: 613925--614411 Score: 365
Period size: 88 Copynumber: 5.6 Consensus size: 89
613915 CAGATATGCA
* * *
613925 TGAAATGATGCAAATGCAAGCATCAATAAAGTGGAAAATGAC-TATGAAATGACGCAAATACCAA
1 TGAAACGATGCAAATGCAAGCATCAATAAAGTGGCAAATGACATATGAAATGATGCAAATACCAA
613989 TGTCATCTAAAATGCAAATGTAGG
66 TGTCATCTAAAATGCAAATGTAGG
* * * ** * * *
614013 TGAAACGATGCAAATACAAGCATCAATAAAATAGCAAATG-CACCTGAAACGATGCAAATGCGAA
1 TGAAACGATGCAAATGCAAGCATCAATAAAGTGGCAAATGACATATGAAATGATGCAAATACCAA
* * *
614077 TGTTATCAAAACTATG--AATGT-GCA
66 TGTCATCTAAA--ATGCAAATGTAG-G
* * * * * *
614101 TGAAATGATGCAATTGCAAGTATCAATAAAAG-GGCAAAT-ACATATGATATGATACAGATACCA
1 TGAAACGATGCAAATGCAAGCATCAAT-AAAGTGGCAAATGACATATGAAATGATGCAAATACCA
* * * *
614164 A-GTCATGTAAAATGAAAATAT-GCA
65 ATGTCATCTAAAATGCAAATGTAG-G
* * * * * * *
614188 TGAAACAATGCAAATACAGGCATCAGTAAAGTGGCGAATG-CATATTAAAT-ATTGCAAATGCCA
1 TGAAACGATGCAAATGCAAGCATCAATAAAGTGGCAAATGACATATGAAATGA-TGCAAATACCA
* * * *
614251 ATGTTATCT-GAATGCAAATGCATG
65 ATGTCATCTAAAATGCAAATGTAGG
* * * * * * * *
614275 TAAAATGATTCAAATGCAAGCATCAACAAAGGGGCAAACG-CATATGCAATGATGCAAATACCAC
1 TGAAACGATGCAAATGCAAGCATCAATAAAGTGGCAAATGACATATGAAATGATGCAAATACCAA
* *
614339 TATCATTTAAAATGCAAATGTAGG
66 TGTCATCTAAAATGCAAATGTAGG
* * * *
614363 TGAGACAATGCAAATGCAATCATCAATAGAA-TGACAAATG-CATATGAAA
1 TGAAACGATGCAAATGCAAGCATCAATA-AAGTGGCAAATGACATATGAAA
614412 ATTTACAAAT
Statistics
Matches: 298, Mismatches: 85, Indels: 32
0.72 0.20 0.08
Matches are distributed among these distances:
85 3 0.01
86 5 0.02
87 119 0.40
88 163 0.55
89 5 0.02
90 3 0.01
ACGTcount: A:0.45, C:0.15, G:0.18, T:0.22
Consensus pattern (89 bp):
TGAAACGATGCAAATGCAAGCATCAATAAAGTGGCAAATGACATATGAAATGATGCAAATACCAA
TGTCATCTAAAATGCAAATGTAGG
Found at i:614050 original size:44 final size:41
Alignment explanation
Indices: 613924--614071 Score: 120
Period size: 44 Copynumber: 3.4 Consensus size: 41
613914 GCAGATATGC
* * * *
613924 ATGAAATGATGCAAATGCAAGCATCAATAAAGTGGAAAATGACT
1 ATGAAACGATGCAAATACAAGCATCAATAAAAT-GCAAATG--T
* *
613968 ATGAAATGACGCAAATACCAATGTCATC--TAAAATGCAAATGT
1 ATGAAACGATGCAAATA-CAA-G-CATCAATAAAATGCAAATGT
*
614010 AGGTGAAACGATGCAAATACAAGCATCAATAAAATAGCAAATGC
1 A--TGAAACGATGCAAATACAAGCATCAATAAAAT-GCAAATGT
614054 ACCTGAAACGATGCAAAT
1 A--TGAAACGATGCAAAT
614072 GCGAATGTTA
Statistics
Matches: 87, Mismatches: 9, Indels: 16
0.78 0.08 0.14
Matches are distributed among these distances:
41 4 0.05
42 3 0.03
43 9 0.10
44 58 0.67
45 8 0.09
46 1 0.01
47 4 0.05
ACGTcount: A:0.47, C:0.16, G:0.18, T:0.20
Consensus pattern (41 bp):
ATGAAACGATGCAAATACAAGCATCAATAAAATGCAAATGT
Found at i:614423 original size:175 final size:172
Alignment explanation
Indices: 613918--614423 Score: 470
Period size: 175 Copynumber: 2.9 Consensus size: 172
613908 AATGGTGCAG
* * *
613918 ATATGCATGAAATGATGCAAATGCAAGCATCAATAAAGTGGAAAATG-ACTATGAAATGACGCAA
1 ATATGCATGAAATGATGCAAATGCAAGCATCAATAAAGGGGCAAATGCA-TATG-AATGATGCAA
* *
613982 ATACCAATGTCATCTAAAATGCAAATGTAGGTGAAACGATGCAAATACAAGCATCAATAAAAT-A
64 ATACC-ATATCATCTAAAATGCAAATGTAGGTGAAACAATGCAAATACAAGCATCAAT-AAATGA
** *** *
614046 GCAAATGCACCTGAAACGATGCAAATGCGAATGTTATCAAAACTATGA
127 -CAAATGCATATGAAAATTTGCAAATGCCAATGTTATCAAAAC-ATGA
* * * * * * *
614094 ATGTGCATGAAATGATGCAATTGCAAGTATCAATAAAAGGGCAAATACATATGATATGATACAGA
1 ATATGCATGAAATGATGCAAATGCAAGCATCAATAAAGGGGCAAATGCATATGA-ATGATGCAAA
* * * * * * *
614159 TACCA-AGTCATGTAAAATGAAAATAT-GCATGAAACAATGCAAATACAGGCATCAGTAAAGTGG
65 TACCATA-TCATCTAAAATGCAAATGTAG-GTGAAACAATGCAAATACAAGCATCAATAAA-TGA
* * **
614222 CGAATGCATAT-TAAATATTGCAAATGCCAATGTTATC-TGA-ATGCA
127 CAAATGCATATGAAAAT-TTGCAAATGCCAATGTTATCAAAACATG-A
* * *
614267 A-ATGCATGTAAAATGATTCAAATGCAAGCATCAACAAAGGGGCAAACGCATATGCAATGATGCA
1 ATATGCATG--AAATGATGCAAATGCAAGCATCAATAAAGGGGCAAATGCATATG-AATGATGCA
* * * *
614331 AATACCACTATCATTTAAAATGCAAATGTAGGTGAGACAATGCAAATGCAATCATCAATAGAATG
63 AATACCA-TATCATCTAAAATGCAAATGTAGGTGAAACAATGCAAATACAAGCATCAATA-AATG
*
614396 ACAAATGCATATGAAAATTTACAAATGC
126 ACAAATGCATATGAAAATTTGCAAATGC
614424 TAATACAGTC
Statistics
Matches: 262, Mismatches: 52, Indels: 33
0.76 0.15 0.10
Matches are distributed among these distances:
172 9 0.03
173 2 0.01
174 57 0.22
175 130 0.50
176 63 0.24
177 1 0.00
ACGTcount: A:0.45, C:0.15, G:0.18, T:0.23
Consensus pattern (172 bp):
ATATGCATGAAATGATGCAAATGCAAGCATCAATAAAGGGGCAAATGCATATGAATGATGCAAAT
ACCATATCATCTAAAATGCAAATGTAGGTGAAACAATGCAAATACAAGCATCAATAAATGACAAA
TGCATATGAAAATTTGCAAATGCCAATGTTATCAAAACATGA
Found at i:615483 original size:20 final size:20
Alignment explanation
Indices: 615460--615510 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 20
615450 ACTATCTGCA
615460 CTTTTTTTTTTCATTTCATT
1 CTTTTTTTTTTCATTTCATT
* * *
615480 CTTTTTTGTTTCTTTTCCTT
1 CTTTTTTTTTTCATTTCATT
615500 -TTTTTTCTTTT
1 CTTTTTT-TTTT
615511 TTTTTGGAGA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
19 6 0.23
20 20 0.77
ACGTcount: A:0.04, C:0.16, G:0.02, T:0.78
Consensus pattern (20 bp):
CTTTTTTTTTTCATTTCATT
Found at i:619211 original size:155 final size:153
Alignment explanation
Indices: 619030--619522 Score: 596
Period size: 155 Copynumber: 3.2 Consensus size: 153
619020 TGAGGATATT
* *
619030 TTCGATTTAAAAGTGCCTGATACCCCTAAAGGACTTAAAAAGGA-TATAGATGAGATGAACCTAT
1 TTCGATGTAAAAGTGCCCGATACCCCTAAAGGAC-TAAAAAGGATTATAGATGAGATGAACCTAT
* * * *
619094 CCTAAATACCCACCTTCGACACAAAAGCGGACTTGGTGACAACCTAAGACTTGGTTCTAAAAAAA
65 CCTAAATACCCACCTTCGACATAAAAGCGGACTCGATGACAACCTAAGACTT-GTTCTAAGAAAA
*
619159 TTATGAAAATACCTTTAGGGGATACC
129 TTATGAAAATACC-TTAGGAGATACC
* * * * * *
619185 TTCGATGTAGAAGTGCCCGATACCCCTAAAAGACTAAAAAAGATTGTGGATGGGATGAACCTATC
1 TTCGATGTAAAAGTGCCCGATACCCCTAAAGGACTAAAAAGGATTATAGATGAGATGAACCTATC
* * * * * * *
619250 CTAAATACCCATCTTCGGCATAAAAGCGGACCCAATGACATCCTAAGACTCTATTTTAAGAAAAT
66 CTAAATACCCACCTTCGACATAAAAGCGGACTCGATGACAACCTAAGACT-TGTTCTAAGAAAAT
*
619315 TATGAAAA-AGCCCTTAGGAGATACT
130 TATGAAAATA--CCTTAGGAGATACC
* * * * *
619340 TTCGACGTAGAAGTGCCCAATA-CCCTAAAGGACCTAAAAAGGATTATAGATAAGATAAACCTAT
1 TTCGATGTAAAAGTGCCCGATACCCCTAAAGGA-CTAAAAAGGATTATAGATGAGATGAACCTAT
* * * *
619404 CCTAAATACACACCTTTGACATAAAAGAGGACTCGATGACAACCTAAGACTCAGTTCTAAGAAAA
65 CCTAAATACCCACCTTCGACATAAAAGCGGACTCGATGACAACCTAAGACT-TGTTCTAAGAAAA
*
619469 TTATGAAAATAACCCTAGGAGATACC
129 TTATGAAAAT-ACCTTAGGAGATACC
*
619495 TTCGATGTAAAAGTGCCTGATACCCCTA
1 TTCGATGTAAAAGTGCCCGATACCCCTA
619523 GTGGATACTA
Statistics
Matches: 283, Mismatches: 47, Indels: 15
0.82 0.14 0.04
Matches are distributed among these distances:
154 18 0.06
155 256 0.90
156 8 0.03
157 1 0.00
ACGTcount: A:0.39, C:0.21, G:0.17, T:0.24
Consensus pattern (153 bp):
TTCGATGTAAAAGTGCCCGATACCCCTAAAGGACTAAAAAGGATTATAGATGAGATGAACCTATC
CTAAATACCCACCTTCGACATAAAAGCGGACTCGATGACAACCTAAGACTTGTTCTAAGAAAATT
ATGAAAATACCTTAGGAGATACC
Found at i:621630 original size:144 final size:145
Alignment explanation
Indices: 621479--621765 Score: 418
Period size: 144 Copynumber: 2.0 Consensus size: 145
621469 GAATCAAATG
* * *
621479 ATAATATTTGATAAATTTTAAAAATTAAAAACCAAGAAAAATTCCCTCGAAAATATTTACCA-AA
1 ATAATATTTGATAAATTTTAAAAATTAAAAACCAAGAAAAATCCCCCCAAAAATATTTA-CAGAA
* **
621543 TAGAAAACTTCGTATTTTAAAAACAAGGGAATTTTAAG-A-AAAAAACTCATGAAGATGAGTGAA
65 TAAAAAACTTCGTATTTTAAAAACAA-AAAATTTTAAGAATAAAAAACTCATGAAGATGAGTGAA
621606 TTTTTAAAAATTGAATA
129 TTTTTAAAAATTGAATA
621623 ATAATATTTGATAAATTTTAAAAATTAAAAACCAAGAAAAATCCCCCCAAAAATATTTACAGAAT
1 ATAATATTTGATAAATTTTAAAAATTAAAAACCAAGAAAAATCCCCCCAAAAATATTTACAGAAT
**
621688 AAAAAACTTCGTATTTTCGAAACAAAAAATTTTAAGAAAAAAATAAAAAACTCATGAAGATGAGT
66 AAAAAACTTCGTATTTTAAAAACAAAAAATTTTAAG-----AATAAAAAACTCATGAAGATGAGT
621753 GAATTTTTAAAAA
126 GAATTTTTAAAAA
621766 CTAATTTAAA
Statistics
Matches: 127, Mismatches: 8, Indels: 10
0.88 0.06 0.07
Matches are distributed among these distances:
143 11 0.09
144 81 0.64
149 1 0.01
150 34 0.27
ACGTcount: A:0.53, C:0.10, G:0.09, T:0.29
Consensus pattern (145 bp):
ATAATATTTGATAAATTTTAAAAATTAAAAACCAAGAAAAATCCCCCCAAAAATATTTACAGAAT
AAAAAACTTCGTATTTTAAAAACAAAAAATTTTAAGAATAAAAAACTCATGAAGATGAGTGAATT
TTTAAAAATTGAATA
Found at i:621889 original size:16 final size:16
Alignment explanation
Indices: 621864--621894 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
621854 GAAACTTCGT
*
621864 AATTTGAAAAGAAAAA
1 AATTTCAAAAGAAAAA
621880 AATTTCAAAAGAAAA
1 AATTTCAAAAGAAAA
621895 TCAATAAGTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.68, C:0.03, G:0.10, T:0.19
Consensus pattern (16 bp):
AATTTCAAAAGAAAAA
Found at i:624312 original size:29 final size:28
Alignment explanation
Indices: 624272--624326 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 28
624262 ATCTTTTATG
*
624272 ATTTTGAAACTTCTT-TGTCATTTCATGT
1 ATTTTAAAACTT-TTATGTCATTTCATGT
624300 ATTTTAAAGACTTTTATGTCATTTCAT
1 ATTTTAAA-ACTTTTATGTCATTTCAT
624327 TCATTTTTAG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
28 9 0.38
29 15 0.62
ACGTcount: A:0.25, C:0.13, G:0.09, T:0.53
Consensus pattern (28 bp):
ATTTTAAAACTTTTATGTCATTTCATGT
Found at i:624400 original size:30 final size:30
Alignment explanation
Indices: 624290--624400 Score: 90
Period size: 30 Copynumber: 3.8 Consensus size: 30
624280 ACTTCTTTGT
* * *
624290 CATTTCATGTATTTTAAAG--ACTTTTATG
1 CATTTCATGCATTTTAGAGTTACTATTATG
*
624318 TCATTTCATTCATTTTTAGAAGTTACTA-TAT-
1 -CATTTCATGCA-TTTTAG-AGTTACTATTATG
* * *
624349 AATTTCATACATTGT--AGTTACTATTATG
1 CATTTCATGCATTTTAGAGTTACTATTATG
624377 CATTTCATGCATTTTAGAGTTACT
1 CATTTCATGCATTTTAGAGTTACT
624401 TTAGTCATTT
Statistics
Matches: 64, Mismatches: 10, Indels: 15
0.72 0.11 0.17
Matches are distributed among these distances:
26 8 0.12
27 3 0.05
28 12 0.19
29 12 0.19
30 21 0.33
31 2 0.03
32 3 0.05
33 3 0.05
ACGTcount: A:0.29, C:0.13, G:0.10, T:0.49
Consensus pattern (30 bp):
CATTTCATGCATTTTAGAGTTACTATTATG
Found at i:624854 original size:57 final size:57
Alignment explanation
Indices: 624723--624854 Score: 149
Period size: 57 Copynumber: 2.3 Consensus size: 57
624713 ACTTTTCTAG
* *
624723 AATTTTATGCATTTTAAGACTATTTTAGTAATTTTCTATGTTTAAGGGACTATCAAGC
1 AATTTTATGCATTTT-AGACCATTTTAGTAATTTTCTATGATTAAGGGACTATCAAGC
* ** * * * * *
624781 AATTTCATAAAATTTAGGCCATTTTAGTAATTTT-TCATGATTAAGGGACTATTATGT
1 AATTTTATGCATTTTAGACCATTTTAGTAATTTTCT-ATGATTAAGGGACTATCAAGC
624838 AATTTTATGCATTTTAG
1 AATTTTATGCATTTTAG
624855 CATCATTCTA
Statistics
Matches: 59, Mismatches: 14, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
56 1 0.02
57 47 0.80
58 11 0.19
ACGTcount: A:0.32, C:0.09, G:0.14, T:0.45
Consensus pattern (57 bp):
AATTTTATGCATTTTAGACCATTTTAGTAATTTTCTATGATTAAGGGACTATCAAGC
Found at i:625896 original size:9 final size:10
Alignment explanation
Indices: 625882--625912 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
625872 AATTTTGTCT
*
625882 ATTTTTTGCA
1 ATTTTTTGAA
625892 ATTTTTTGAA
1 ATTTTTTGAA
625902 ATTTTTTGAA
1 ATTTTTTGAA
625912 A
1 A
625913 AACTTGAGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.29, C:0.03, G:0.10, T:0.58
Consensus pattern (10 bp):
ATTTTTTGAA
Found at i:626575 original size:164 final size:162
Alignment explanation
Indices: 626352--626783 Score: 391
Period size: 156 Copynumber: 2.6 Consensus size: 162
626342 AAATTCATTC
* * * * * * * *
626352 ATTTTTCATTTTTCCTTAGAATTCCTCCTATTTTTGATATATAGAGGTTTGTTCTCCGTAATTGT
1 ATTTTTCATTTTTTCTT-GAAATCCTCATATTTTTTAAATATAGAGTTTTCTACTCCGTAATTGT
* *
626417 TTCGGAAGGATTTTTATCAATTTAAAATTTTTAAAAATCATCAAATATTATCATTTAATTCACAT
65 TTCGG-AGGATTTTT-TCAATTTAAAATTTTTAAAATTCATCAAATATTATCATTTAATTCAAAT
* *
626482 TAAATTAATTTTG-AAAATTCCATTTATTTCCTGA
128 TAAATCAATTTTGAAAAATTCCATTTATTTCATGA
626516 ATTTTTCATTTTTTTCTTGAAATCCTCATATTTTTTAAATATAGAGTTTTCTACTCCGTAAATGT
1 ATTTTTCA-TTTTTTCTTGAAATCCTCATATTTTTTAAATATAGAGTTTTCTACTCCGT-AAT-T
* * ** *
626581 TTTTAGGAGGA-TTTTTC---TT---A-GCTTAAAATTTATCAAATATTATCATTTAATTCAAAT
63 GTTTCGGAGGATTTTTTCAATTTAAAATTTTTAAAATTCATCAAATATTATCATTTAATTCAAAT
* * *
626638 TAAATCAGTTTTGAAAAATTTCTTTTATTTCATGA
128 TAAATCAATTTTGAAAAATTCCATTTATTTCATGA
* * * * *
626673 ATTTTTCATTTTTT-TTGAGATCCTTATGTTTTCAAATTCAAA-ATACGGAGTTTTCTATTCCAT
1 ATTTTTCATTTTTTCTTGAAATCCTCATATTTT----TT-AAATATA--GAGTTTTCTACTCCGT
* * *
626736 AAATGTTTTCGGGGGGATTTTTTTTAATTTAAAATTTTTAAAATTCAT
59 AATTG-TTTC-GGAGGA-TTTTTTCAATTTAAAATTTTTAAAATTCAT
626784 ATAACTTTGT
Statistics
Matches: 213, Mismatches: 33, Indels: 38
0.75 0.12 0.13
Matches are distributed among these distances:
155 15 0.07
156 49 0.23
157 27 0.13
159 6 0.03
160 10 0.05
161 19 0.09
163 7 0.03
164 46 0.22
165 15 0.07
166 8 0.04
169 1 0.00
170 10 0.05
ACGTcount: A:0.30, C:0.11, G:0.09, T:0.49
Consensus pattern (162 bp):
ATTTTTCATTTTTTCTTGAAATCCTCATATTTTTTAAATATAGAGTTTTCTACTCCGTAATTGTT
TCGGAGGATTTTTTCAATTTAAAATTTTTAAAATTCATCAAATATTATCATTTAATTCAAATTAA
ATCAATTTTGAAAAATTCCATTTATTTCATGA
Found at i:627009 original size:14 final size:13
Alignment explanation
Indices: 626984--627039 Score: 51
Period size: 14 Copynumber: 4.2 Consensus size: 13
626974 TCATAAAAAA
*
626984 TTTTATTTTAATT
1 TTTTAATTTAATT
626997 TTTATAATTTAATCT
1 TTT-TAATTTAAT-T
*
627012 TTTTTA-TTAATT
1 TTTTAATTTAATT
*
627024 TTTTCAATATAATT
1 TTTT-AATTTAATT
627038 TT
1 TT
627040 ACGCATATTA
Statistics
Matches: 35, Mismatches: 4, Indels: 7
0.76 0.09 0.15
Matches are distributed among these distances:
12 5 0.14
13 9 0.26
14 17 0.49
15 4 0.11
ACGTcount: A:0.29, C:0.04, G:0.00, T:0.68
Consensus pattern (13 bp):
TTTTAATTTAATT
Found at i:628887 original size:139 final size:140
Alignment explanation
Indices: 628423--628915 Score: 556
Period size: 136 Copynumber: 3.5 Consensus size: 140
628413 GGTTATCATT
* * * *
628423 GGAGTATAGAAATCTTCAAAA-TTTTTCGTATCTTTTTGGTTCTCTATTAAGGTAA-GAAATGAA
1 GGAGTATAGAAATCTTCAAAACTTTTT-GTATCTTTTCGATTCTCCATTAAAG-AATGAAATGAA
* * *
628486 TTTTTGAAATTAAAAAATTAAATAAAAAATTATTA-CTTTAATTTTTCAAGGTTTCTAATATTCA
64 TTTTTAAAATTTAAAAATTAAAT-AAAAATTATTATC-TTAATTTTTCAAGGTTTCTAATATTCC
**
628550 TATGGTTTTCCATA
127 TATGGTTTTCTGTA
* * * *
628564 GGAGTATAGAAATCTTCAAAACTTTGTGTATCTTTGTAG-TTATCC----AAGTATGAAATGAAT
1 GGAGTATAGAAATCTTCAAAACTTTTTGTATCTTT-TCGATTCTCCATTAAAGAATGAAATGAAT
* * *
628624 TTTTGAAA-TTAAAAGATTAAATAAAAATTATTGTCTTAATTTTTCAGGGTTTCTAATATTCCTA
65 TTTTAAAATTTAAAA-ATTAAATAAAAATTATTATCTTAATTTTTCAAGGTTTCTAATATTCCTA
628688 TGGTTTTCTGTA
129 TGGTTTTCTGTA
* * * * * * * *
628700 GGGGTGTAGAAATCTTCAAAAGTTTTCGTATCTTTTCAATTTTTCATTAAAGAATAAAATGAATT
1 GGAGTATAGAAATCTTCAAAACTTTTTGTATCTTTTCGATTCTCCATTAAAGAATGAAATGAATT
* * *
628765 TTTAAAATTTAAAAATTAAATAAAAATTATTATCTTAATTTGTCAAGATTTCT-GTATTCCTATG
66 TTTAAAATTTAAAAATTAAATAAAAATTATTATCTTAATTTTTCAAGGTTTCTAATATTCCTATG
628829 GTTTTCTGTA
131 GTTTTCTGTA
* * * * *
628839 GGAGTATAGAAATTTTCAAAACTTTTTATATCTTTTCGATTCTCCATTAAGGTATGAAATAAGAT
1 GGAGTATAGAAATCTTCAAAACTTTTTGTATCTTTTCGATTCTCCATTAAAGAATGAAATGA-AT
*
628904 TTTCAAAATTTA
65 TTTTAAAATTTA
628916 TAACTTATAT
Statistics
Matches: 297, Mismatches: 43, Indels: 25
0.81 0.12 0.07
Matches are distributed among these distances:
135 1 0.00
136 87 0.29
137 27 0.09
139 69 0.23
140 68 0.23
141 39 0.13
142 6 0.02
ACGTcount: A:0.36, C:0.09, G:0.12, T:0.43
Consensus pattern (140 bp):
GGAGTATAGAAATCTTCAAAACTTTTTGTATCTTTTCGATTCTCCATTAAAGAATGAAATGAATT
TTTAAAATTTAAAAATTAAATAAAAATTATTATCTTAATTTTTCAAGGTTTCTAATATTCCTATG
GTTTTCTGTA
Found at i:630813 original size:13 final size:13
Alignment explanation
Indices: 630795--630825 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
630785 ACAATTCATC
630795 ATGTATCGATACA
1 ATGTATCGATACA
630808 ATGTATCGATACA
1 ATGTATCGATACA
*
630821 TTGTA
1 ATGTA
630826 CCATGTATAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.35, C:0.13, G:0.16, T:0.35
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:630831 original size:33 final size:33
Alignment explanation
Indices: 630775--630838 Score: 85
Period size: 33 Copynumber: 1.9 Consensus size: 33
630765 GTTACAAGCT
* *
630775 ATGTATCGATACAATTCATCATGTATCGATACA
1 ATGTATCGATACAATTCACCATGTATAGATACA
*
630808 ATGTATCGATAC-ATTGTACCATGTATAGATA
1 ATGTATCGATACAATT-CACCATGTATAGATA
630839 GAAACAGTGG
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
32 3 0.11
33 24 0.89
ACGTcount: A:0.36, C:0.16, G:0.14, T:0.34
Consensus pattern (33 bp):
ATGTATCGATACAATTCACCATGTATAGATACA
Found at i:630895 original size:20 final size:20
Alignment explanation
Indices: 630869--630924 Score: 80
Period size: 20 Copynumber: 2.9 Consensus size: 20
630859 ACTACCAATC
*
630869 TCATGTATCGATACAATT-G
1 TCATGTATCGATACAATTAA
630888 TCCATGTATCGATACAATTAA
1 T-CATGTATCGATACAATTAA
630909 T-ATGTATCGATACAAT
1 TCATGTATCGATACAAT
630925 GTATTGATAC
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
19 16 0.47
20 17 0.50
21 1 0.03
ACGTcount: A:0.36, C:0.16, G:0.12, T:0.36
Consensus pattern (20 bp):
TCATGTATCGATACAATTAA
Found at i:633259 original size:20 final size:23
Alignment explanation
Indices: 633234--633280 Score: 66
Period size: 22 Copynumber: 2.2 Consensus size: 23
633224 TCCAGTTGAT
633234 GATTTTG-A-TGAAAAA-TGAAA
1 GATTTTGAAGTGAAAAAGTGAAA
633254 GATTTTGAAGTGAAAAAGTGAAA
1 GATTTTGAAGTGAAAAAGTGAAA
633277 -ATTT
1 GATTT
633281 GTGGAAAATT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
20 7 0.29
21 1 0.04
22 11 0.46
23 5 0.21
ACGTcount: A:0.47, C:0.00, G:0.21, T:0.32
Consensus pattern (23 bp):
GATTTTGAAGTGAAAAAGTGAAA
Found at i:633421 original size:13 final size:13
Alignment explanation
Indices: 633403--633428 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
633393 TAGTACCCAC
633403 TGTATCGATACAA
1 TGTATCGATACAA
633416 TGTATCGATACAA
1 TGTATCGATACAA
633429 GGAATATTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:634625 original size:21 final size:20
Alignment explanation
Indices: 634579--634631 Score: 72
Period size: 19 Copynumber: 2.6 Consensus size: 20
634569 GTAGCCAAAC
**
634579 TTGTATCGATACACCAAGTA
1 TTGTATCGATACACCAAAAA
634599 -TGTATCGATACACCAAAAAA
1 TTGTATCGATACACC-AAAAA
634619 TTGTATCGATACA
1 TTGTATCGATACA
634632 TTGGCCTGTA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
19 14 0.48
20 3 0.10
21 12 0.41
ACGTcount: A:0.40, C:0.19, G:0.13, T:0.28
Consensus pattern (20 bp):
TTGTATCGATACACCAAAAA
Found at i:638697 original size:15 final size:16
Alignment explanation
Indices: 638675--638712 Score: 60
Period size: 15 Copynumber: 2.4 Consensus size: 16
638665 GATAAAAATG
*
638675 TCCAAAATGAGGAAGC
1 TCCAAAATGAAGAAGC
638691 T-CAAAATGAAGAAGC
1 TCCAAAATGAAGAAGC
638706 TCCAAAA
1 TCCAAAA
638713 GAAATTGATG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
15 14 0.70
16 6 0.30
ACGTcount: A:0.50, C:0.18, G:0.18, T:0.13
Consensus pattern (16 bp):
TCCAAAATGAAGAAGC
Found at i:640621 original size:13 final size:13
Alignment explanation
Indices: 640603--640628 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
640593 TGATGTTGAA
640603 ATGAATGATTTTG
1 ATGAATGATTTTG
640616 ATGAATGATTTTG
1 ATGAATGATTTTG
640629 TGTTTTTATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.23, T:0.46
Consensus pattern (13 bp):
ATGAATGATTTTG
Found at i:640806 original size:13 final size:13
Alignment explanation
Indices: 640788--640852 Score: 112
Period size: 13 Copynumber: 5.0 Consensus size: 13
640778 ACATTTTTCT
640788 TTGTATCGATACA
1 TTGTATCGATACA
640801 TTGTATCGATACA
1 TTGTATCGATACA
*
640814 CTGTATCGATACA
1 TTGTATCGATACA
640827 TTGTATCGATACA
1 TTGTATCGATACA
*
640840 CTGTATCGATACA
1 TTGTATCGATACA
640853 GGGGGATTAT
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 49 1.00
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.35
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:640825 original size:26 final size:26
Alignment explanation
Indices: 640789--640852 Score: 128
Period size: 26 Copynumber: 2.5 Consensus size: 26
640779 CATTTTTCTT
640789 TGTATCGATACATTGTATCGATACAC
1 TGTATCGATACATTGTATCGATACAC
640815 TGTATCGATACATTGTATCGATACAC
1 TGTATCGATACATTGTATCGATACAC
640841 TGTATCGATACA
1 TGTATCGATACA
640853 GGGGGATTAT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 38 1.00
ACGTcount: A:0.31, C:0.19, G:0.16, T:0.34
Consensus pattern (26 bp):
TGTATCGATACATTGTATCGATACAC
Found at i:641016 original size:20 final size:19
Alignment explanation
Indices: 640975--641017 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 19
640965 ATCTTTTGCA
640975 AAATACTTGTTTTTCACTTC
1 AAATACTTGTTTTTCAC-TC
640995 AAATCACTTCGTTTTTCA-TC
1 AAAT-ACTT-GTTTTTCACTC
641015 AAA
1 AAA
641018 ACCAGCATCA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
20 9 0.43
21 4 0.19
22 8 0.38
ACGTcount: A:0.30, C:0.21, G:0.05, T:0.44
Consensus pattern (19 bp):
AAATACTTGTTTTTCACTC
Found at i:642273 original size:13 final size:13
Alignment explanation
Indices: 642255--642280 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
642245 CAATTTTTTG
642255 TGTATCGATACAT
1 TGTATCGATACAT
642268 TGTATCGATACAT
1 TGTATCGATACAT
642281 ACTTGGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:642295 original size:32 final size:33
Alignment explanation
Indices: 642235--642298 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 33
642225 TACAAGCCAA
** *
642235 TGTATCGATACAATTTTTTGTGTATCGATACAT
1 TGTATCGATACAATACTTGGTGTATCGATACAT
642268 TGTATCGATAC-ATACTTGGTGTATCGATACA
1 TGTATCGATACAATACTTGGTGTATCGATACA
642299 AGTTTGGCTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 17 0.61
33 11 0.39
ACGTcount: A:0.28, C:0.14, G:0.17, T:0.41
Consensus pattern (33 bp):
TGTATCGATACAATACTTGGTGTATCGATACAT
Found at i:643027 original size:21 final size:21
Alignment explanation
Indices: 642986--643029 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
642976 CTCCCCTTTA
* *
642986 TCTCCCCCGTTTATTAATAAT
1 TCTCCCCCGTTAATCAATAAT
643007 TCTCCCCC-TTAATCAAGTAAT
1 TCTCCCCCGTTAATCAA-TAAT
643028 TC
1 TC
643030 ATATCAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 6 0.30
21 14 0.70
ACGTcount: A:0.25, C:0.32, G:0.05, T:0.39
Consensus pattern (21 bp):
TCTCCCCCGTTAATCAATAAT
Found at i:644585 original size:13 final size:13
Alignment explanation
Indices: 644567--644592 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
644557 ATAATCACCC
644567 TGTATCGATACAA
1 TGTATCGATACAA
644580 TGTATCGATACAA
1 TGTATCGATACAA
644593 AGAAAAATGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:648543 original size:21 final size:21
Alignment explanation
Indices: 648497--648541 Score: 65
Period size: 21 Copynumber: 2.1 Consensus size: 21
648487 AAGTTTTCAT
648497 TTTTC-TTAGCTAACTCATTA
1 TTTTCATTAGCTAACTCATTA
*
648517 TTTTCATTAGCTAACTTCTTTA
1 TTTTCATTAGCTAAC-TCATTA
648539 TTT
1 TTT
648542 CAACTTGCAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 5 0.23
21 9 0.41
22 8 0.36
ACGTcount: A:0.22, C:0.18, G:0.04, T:0.56
Consensus pattern (21 bp):
TTTTCATTAGCTAACTCATTA
Found at i:650751 original size:13 final size:13
Alignment explanation
Indices: 650733--650758 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
650723 TACAAGCCAA
650733 TGTATCGATACAT
1 TGTATCGATACAT
650746 TGTATCGATACAT
1 TGTATCGATACAT
650759 ACTTGGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:653068 original size:13 final size:13
Alignment explanation
Indices: 653050--653075 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
653040 TACACCAAGT
653050 ATGTATCGATACA
1 ATGTATCGATACA
653063 ATGTATCGATACA
1 ATGTATCGATACA
653076 CCAAAAAATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:653094 original size:34 final size:32
Alignment explanation
Indices: 653032--653096 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 32
653022 TAGCCAAACT
**
653032 TGTATCGATACACCAAGTATGTATCGATACAA
1 TGTATCGATACACCAAAAATGTATCGATACAA
653064 TGTATCGATACACCAAAAAATTGTATCGATACA
1 TGTATCGATACACC-AAAAA-TGTATCGATACA
653097 TTGGCCTGTA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
32 14 0.48
33 3 0.10
34 12 0.41
ACGTcount: A:0.40, C:0.18, G:0.14, T:0.28
Consensus pattern (32 bp):
TGTATCGATACACCAAAAATGTATCGATACAA
Found at i:660658 original size:133 final size:132
Alignment explanation
Indices: 660434--660765 Score: 349
Period size: 133 Copynumber: 2.5 Consensus size: 132
660424 TTGGGTTTGG
* * * * *
660434 AGTATCCCCT-CAGAGATAGTAGGGTTAGAGTATCTCCT----ATGTAAAATTCAGTGCTGTAG-
1 AGTATCCTCTCCA-AGATGGTAGGGTTAGAGTATC-CCTAGAGATGAAAAATTCAATG-TTTAGA
* * * ** * *
660493 AAGTAAAAACGGGGTTGGAGTATCCCTTGAGATGAAAATTTTTGTGTTTTAGAAGTAAAAATAG-
63 AAATAAAAACGGGGTTGAAGTATCCCCTGAGATGAAAATTTCAGTATTTTAAAAGTAAAAA-AGA
*
660557 GGTTGG
127 GGTTGA
* *
660563 AGTATTCC-CTCGAAGATGGTAGGGTT-GAGGTATCCCTAGAGATGAAAACTTCAATGTTTTAGA
1 AGTA-TCCTCTCCAAGATGGTAGGGTTAGA-GTATCCCTAGAGATGAAAAATTCAATG-TTTAGA
* *
660626 AAATAAAAATGGGGTTGAAGTATCCCCTGAGATGAAAATTTCAGTATTTTAAAAGTAAAAACGAG
63 AAATAAAAACGGGGTTGAAGTATCCCCTGAGATGAAAATTTCAGTATTTTAAAAGTAAAAAAGAG
660691 GTTGA
128 GTTGA
* * * *
660696 AGTATCCTTTCCAAGATGGTAGGGTTAGAGTATCCCTTGAGATGAAAAATTCGATGTTTAGGAAA
1 AGTATCCTCTCCAAGATGGTAGGGTTAGAGTATCCCTAGAGATGAAAAATTCAATGTTTAGAAAA
660761 TAAAA
66 TAAAA
660766 TGTTAGGATC
Statistics
Matches: 169, Mismatches: 23, Indels: 19
0.80 0.11 0.09
Matches are distributed among these distances:
128 5 0.03
129 23 0.14
130 4 0.02
132 33 0.20
133 102 0.60
134 2 0.01
ACGTcount: A:0.35, C:0.11, G:0.24, T:0.30
Consensus pattern (132 bp):
AGTATCCTCTCCAAGATGGTAGGGTTAGAGTATCCCTAGAGATGAAAAATTCAATGTTTAGAAAA
TAAAAACGGGGTTGAAGTATCCCCTGAGATGAAAATTTCAGTATTTTAAAAGTAAAAAAGAGGTT
GA
Found at i:660676 original size:53 final size:53
Alignment explanation
Indices: 660584--660702 Score: 152
Period size: 53 Copynumber: 2.3 Consensus size: 53
660574 GAAGATGGTA
* * *
660584 GGGTTGAGGTAT-CCCTAGAGATGAAAACTTCAATGTTTTAGAAAATAAAAATG
1 GGGTTGAAGTATCCCCTAGAGATGAAAACTTCAATATTTTA-AAAATAAAAACG
* * *
660637 GGGTTGAAGTATCCCCT-GAGATGAAAATTTCAGTATTTTAAAAGTAAAAACG
1 GGGTTGAAGTATCCCCTAGAGATGAAAACTTCAATATTTTAAAAATAAAAACG
*
660689 AGGTTGAAGTATCC
1 GGGTTGAAGTATCC
660703 TTTCCAAGAT
Statistics
Matches: 58, Mismatches: 7, Indels: 3
0.85 0.10 0.04
Matches are distributed among these distances:
52 23 0.40
53 31 0.53
54 4 0.07
ACGTcount: A:0.38, C:0.11, G:0.23, T:0.29
Consensus pattern (53 bp):
GGGTTGAAGTATCCCCTAGAGATGAAAACTTCAATATTTTAAAAATAAAAACG
Found at i:661057 original size:20 final size:19
Alignment explanation
Indices: 661028--661066 Score: 60
Period size: 20 Copynumber: 2.0 Consensus size: 19
661018 AGGTCAAAAC
*
661028 CCTTAAATGTATCCATACA
1 CCTTAAATGTATCAATACA
661047 CCTTCAAATGTATCAATACA
1 CCTT-AAATGTATCAATACA
661067 TAATGCACAG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 4 0.22
20 14 0.78
ACGTcount: A:0.38, C:0.26, G:0.05, T:0.31
Consensus pattern (19 bp):
CCTTAAATGTATCAATACA
Found at i:661094 original size:13 final size:13
Alignment explanation
Indices: 661076--661100 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
661066 ATAATGCACA
661076 GTATCGATACATT
1 GTATCGATACATT
661089 GTATCGATACAT
1 GTATCGATACAT
661101 GACCAAATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
GTATCGATACATT
Found at i:661223 original size:33 final size:32
Alignment explanation
Indices: 661163--661224 Score: 90
Period size: 33 Copynumber: 1.9 Consensus size: 32
661153 TAACTGTTTT
*
661163 TATCGATACATACAAGATGTATTGATACAATG
1 TATCGATACATACAAGATGTATCGATACAATG
661195 TATCGATACATGACCAA-ATGTATCGATACA
1 TATCGATACAT-A-CAAGATGTATCGATACA
661225 TTGGCTTGTA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
32 11 0.41
33 13 0.48
34 3 0.11
ACGTcount: A:0.40, C:0.16, G:0.15, T:0.29
Consensus pattern (32 bp):
TATCGATACATACAAGATGTATCGATACAATG
Found at i:662817 original size:3 final size:3
Alignment explanation
Indices: 662798--662831 Score: 50
Period size: 3 Copynumber: 11.3 Consensus size: 3
662788 CATCAAGGAC
* *
662798 GAT GAA GAT GGT GAT GAT GAT GAT GAT GAT GAT G
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT G
662832 GTGACTCAGA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.32, C:0.00, G:0.38, T:0.29
Consensus pattern (3 bp):
GAT
Found at i:667309 original size:20 final size:21
Alignment explanation
Indices: 667279--667318 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 21
667269 TCTGAAAAAT
667279 TTCAGAATGTATCGATACATG
1 TTCAGAATGTATCGATACATG
667300 TTCA-AATGTATCGATACAT
1 TTCAGAATGTATCGATACAT
667319 CTGGAAAACT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 15 0.79
21 4 0.21
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Consensus pattern (21 bp):
TTCAGAATGTATCGATACATG
Found at i:667844 original size:21 final size:21
Alignment explanation
Indices: 667807--667850 Score: 54
Period size: 20 Copynumber: 2.1 Consensus size: 21
667797 GCAGCACTCA
* *
667807 CCAGGTCGCGATCGGC-ACCC
1 CCAGGTCGCAACCGGCAACCC
667827 CCAGGTCGCAACCGGGCAACCC
1 CCAGGTCGCAACC-GGCAACCC
667849 CC
1 CC
667851 GCACTCACAG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 11 0.55
21 3 0.15
22 6 0.30
ACGTcount: A:0.18, C:0.48, G:0.27, T:0.07
Consensus pattern (21 bp):
CCAGGTCGCAACCGGCAACCC
Found at i:669810 original size:20 final size:19
Alignment explanation
Indices: 669778--669816 Score: 60
Period size: 20 Copynumber: 2.0 Consensus size: 19
669768 AGGTCAAAAC
669778 CCTTAAATGTATCGATACA
1 CCTTAAATGTATCGATACA
*
669797 CCTTCAAATTTATCGATACA
1 CCTT-AAATGTATCGATACA
669817 TAATGCATAG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 4 0.22
20 14 0.78
ACGTcount: A:0.36, C:0.23, G:0.08, T:0.33
Consensus pattern (19 bp):
CCTTAAATGTATCGATACA
Found at i:669863 original size:20 final size:22
Alignment explanation
Indices: 669838--669890 Score: 67
Period size: 21 Copynumber: 2.5 Consensus size: 22
669828 ATCAATACAT
*
669838 TGTATCGATACATGAC-CA-AA
1 TGTATCGATACATGACAAAGAA
*
669858 TGTATCGATAC-TTACAAAGAA
1 TGTATCGATACATGACAAAGAA
669879 TGTATCGATACA
1 TGTATCGATACA
669891 GGTGATTGGC
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
19 3 0.11
20 12 0.43
21 13 0.46
ACGTcount: A:0.40, C:0.17, G:0.15, T:0.28
Consensus pattern (22 bp):
TGTATCGATACATGACAAAGAA
Found at i:670774 original size:13 final size:13
Alignment explanation
Indices: 670756--670781 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
670746 CATTTTGGAA
670756 TGTATCGATACAT
1 TGTATCGATACAT
670769 TGTATCGATACAT
1 TGTATCGATACAT
670782 CTTGTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:670778 original size:33 final size:32
Alignment explanation
Indices: 670736--670799 Score: 94
Period size: 33 Copynumber: 2.0 Consensus size: 32
670726 TACAAGCCAA
*
670736 TGTATCGATACATTTTG-GAATGTATCGATACAT
1 TGTATCGATACATCTTGTG--TGTATCGATACAT
670769 TGTATCGATACATCTTGTGTGTATCGATACA
1 TGTATCGATACATCTTGTGTGTATCGATACA
670800 AACAGTTAAG
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
32 12 0.41
33 16 0.55
34 1 0.03
ACGTcount: A:0.28, C:0.14, G:0.19, T:0.39
Consensus pattern (32 bp):
TGTATCGATACATCTTGTGTGTATCGATACAT
Found at i:670888 original size:20 final size:21
Alignment explanation
Indices: 670841--670893 Score: 65
Period size: 20 Copynumber: 2.6 Consensus size: 21
670831 GCCAATCACT
*
670841 TGTATCGATACATTCTTTACA
1 TGTATCGATACATTCTGTACA
*
670862 AGTATCGATACATT-TGGT-CA
1 TGTATCGATACATTCT-GTACA
670882 TGTATCGATACA
1 TGTATCGATACA
670894 ATGTATCGAT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
20 14 0.50
21 14 0.50
ACGTcount: A:0.30, C:0.17, G:0.15, T:0.38
Consensus pattern (21 bp):
TGTATCGATACATTCTGTACA
Found at i:670899 original size:13 final size:13
Alignment explanation
Indices: 670881--670905 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
670871 ACATTTGGTC
670881 ATGTATCGATACA
1 ATGTATCGATACA
670894 ATGTATCGATAC
1 ATGTATCGATAC
670906 TATGCATTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:673227 original size:21 final size:21
Alignment explanation
Indices: 673197--673238 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
673187 TGGTTTTTGT
*
673197 TGATGATTTTGATG-GAAAAA
1 TGATGATTTTGAAGTGAAAAA
673217 TGATGTATTTTGAAGTGAAAAA
1 TGATG-ATTTTGAAGTGAAAAA
673239 CAAGAAATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 5 0.26
21 8 0.42
22 6 0.32
ACGTcount: A:0.40, C:0.00, G:0.24, T:0.36
Consensus pattern (21 bp):
TGATGATTTTGAAGTGAAAAA
Found at i:677968 original size:13 final size:13
Alignment explanation
Indices: 677950--677974 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
677940 ATTACTCAAA
677950 TGTATCGATACAT
1 TGTATCGATACAT
677963 TGTATCGATACA
1 TGTATCGATACA
677975 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:678028 original size:52 final size:52
Alignment explanation
Indices: 677983--678108 Score: 207
Period size: 52 Copynumber: 2.4 Consensus size: 52
677973 CACTGATCTT
* *
677983 TGTATCGATACATGCAGGCAAATTTGCCCATATGTATCAATACACTATGAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATGAAA
*
678035 TGTATCGATGCATGCAGGCAAATTTGCCCAGATGTATCGATACACTATGAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATGAAA
* *
678087 TGTATTGATACGTGCAGGCAAA
1 TGTATCGATACATGCAGGCAAA
678109 ATTTCATATT
Statistics
Matches: 68, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
52 68 1.00
ACGTcount: A:0.34, C:0.18, G:0.20, T:0.28
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATGAAA
Found at i:681959 original size:13 final size:13
Alignment explanation
Indices: 681941--681965 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
681931 ATATTTAGTC
681941 ATGTATCGATACA
1 ATGTATCGATACA
681954 ATGTATCGATAC
1 ATGTATCGATAC
681966 TGTGCATTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:683151 original size:79 final size:79
Alignment explanation
Indices: 682971--683205 Score: 254
Period size: 79 Copynumber: 3.0 Consensus size: 79
682961 TAAAAAATAA
* * * * *
682971 GGTTGGAGTATCTAATCGAAAATGATGGGGTTAGAGTATCGTCGAGATGAAAAATTAAATATTTT
1 GGTTGGAGTATCTCATCGAAAATGGTGGGGTTAGAGTATCCTCGAGATGAAAATTTAAATGTTTT
*
683036 GAAAGTAAAAACGG
66 GGAAGTAAAAACGG
* * * * *
683050 GATTGGAGTATCCCCTCGAAAATGGTGGGGTTAGAGTATCCTCAAGATGAAAATTTCAATGTTTT
1 GGTTGGAGTATCTCATCGAAAATGGTGGGGTTAGAGTATCCTCGAGATGAAAATTTAAATGTTTT
*
683115 GGAAGTAAAAAGGG
66 GGAAGTAAAAACGG
* * * * ** * * *
683129 GGTTGGAGTATCTCTTCAAAAATGGTAGGATTAGTCTATCCCTGGAGATGAAAATTTTAGTGTTT
1 GGTTGGAGTATCTCATCGAAAATGGTGGGGTTAGAGTAT-CCTCGAGATGAAAATTTAAATGTTT
* *
683194 TAGAAGTGAAAA
65 TGGAAGTAAAAA
683206 TGGGTGTTAG
Statistics
Matches: 129, Mismatches: 26, Indels: 1
0.83 0.17 0.01
Matches are distributed among these distances:
79 98 0.76
80 31 0.24
ACGTcount: A:0.35, C:0.09, G:0.26, T:0.30
Consensus pattern (79 bp):
GGTTGGAGTATCTCATCGAAAATGGTGGGGTTAGAGTATCCTCGAGATGAAAATTTAAATGTTTT
GGAAGTAAAAACGG
Found at i:685662 original size:52 final size:52
Alignment explanation
Indices: 685587--685724 Score: 181
Period size: 50 Copynumber: 2.7 Consensus size: 52
685577 AATTGCCTAC
* * * **
685587 ATGTATCGATACATTGAAGAATATATCGATACATTTGGGTCAAAAACTTAGA
1 ATGTATCGATACAATGAAAAATATATCGATACATTTGAGTCAAAAACCCAGA
*
685639 ATGTATCGATATAATG-AAAA-ATATCGATACATTTGAGTCAAAAACCCAGA
1 ATGTATCGATACAATGAAAAATATATCGATACATTTGAGTCAAAAACCCAGA
* * *
685689 ATGTATCAATGCAATGAAAAATGTATCGATACATTT
1 ATGTATCGATACAATGAAAAATATATCGATACATTT
685725 TCTTTCTAGA
Statistics
Matches: 74, Mismatches: 10, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
50 40 0.54
51 7 0.09
52 27 0.36
ACGTcount: A:0.43, C:0.12, G:0.15, T:0.30
Consensus pattern (52 bp):
ATGTATCGATACAATGAAAAATATATCGATACATTTGAGTCAAAAACCCAGA
Found at i:686796 original size:264 final size:266
Alignment explanation
Indices: 686388--686904 Score: 650
Period size: 264 Copynumber: 1.9 Consensus size: 266
686378 TTCTTTGAAG
* * *
686388 ACTAAAAGGATAAAAAGTGCCACCAGCTCGTGTGGGCTTTGAAAAGAATAAGGTATCCTGCTCTT
1 ACTAAAAGGATAAAAAGTGCCACCAGCTCGTGTGGGCCTTGAAAAGAAAAAGGCATCCTGCTCTT
* * * * *
686453 TAAGGACAAAAAAGGATAAAAGGGGTGCCACCAACTTGTGTGGGCTTTAAAAAAACGTCCTACTC
66 TAAGAACAAAAAAGAATAAAAGGGGTGCCACCAACTTGTGTAGGCTTTAAAAAAACATCCTACGC
* * *
686518 TTTAAAGACTAAAAGGATAAAAGGTGCCACCAGCTTGCGTGGGCTTTAGAAAG-A-CGTCCTACT
131 TTTAAAGACTAAAAGGATAAAAGGTGCCACCAGATTGCGTGGACTTTAGAAAGAAGCATCCTACT
*
686581 CTTTAAAGACTAAAAGGATAAAAGGTGCCACCAGCTTGCGTGGGCTTTAGAAAGACATCCTACTC
196 CTTTAAAGACTAAAAGGATAAAAGGTGCCACCAACTTGCGTGGGCTTTA-AAAGACATCCTACTC
686646 TTTCAGA
260 TTTCAGA
*
686653 ACTAAAAGGA-AAGAAAGTGCCACCAGCTTGTGTGGGCCTT-AAAAGAAAAAGGCAT-CTAGCTC
1 ACTAAAAGGATAA-AAAGTGCCACCAGCTCGTGTGGGCCTTGAAAAGAAAAAGGCATCCT-GCTC
* * * * ** * *
686715 TTTGAA-AACTAAAAAGAATAAAAGGGTTGCCACCAGCTTGTTTAGGCTTTCGAAAGATATCCTA
64 TTT-AAGAACAAAAAAGAATAAAAGGGGTGCCACCAACTTGTGTAGGCTTTAAAAAAACATCCTA
* * * *
686779 CGCTTTGAGGACTAAAAGGATAAAAGGTGCCACTAGATTGTGTGGACTTTAGAAAGAAAAAGGCA
128 CGCTTTAAAGACTAAAAGGATAAAAGGTGCCACCAGATTGCGTGGACTTTAGAAAG---AA-GCA
* * * * *
686844 TCTTACTCTTTGAGGACTAAAATGATAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGA
189 TCCTACTCTTTAAAGACTAAAAGGATAAAAGGTGCCACCAACTTGCGTGGGCTTTAAAAGA
686905 AAAAGCCATC
Statistics
Matches: 213, Mismatches: 30, Indels: 14
0.83 0.12 0.05
Matches are distributed among these distances:
263 2 0.01
264 117 0.55
265 37 0.17
268 1 0.00
269 5 0.02
270 51 0.24
ACGTcount: A:0.36, C:0.18, G:0.23, T:0.24
Consensus pattern (266 bp):
ACTAAAAGGATAAAAAGTGCCACCAGCTCGTGTGGGCCTTGAAAAGAAAAAGGCATCCTGCTCTT
TAAGAACAAAAAAGAATAAAAGGGGTGCCACCAACTTGTGTAGGCTTTAAAAAAACATCCTACGC
TTTAAAGACTAAAAGGATAAAAGGTGCCACCAGATTGCGTGGACTTTAGAAAGAAGCATCCTACT
CTTTAAAGACTAAAAGGATAAAAGGTGCCACCAACTTGCGTGGGCTTTAAAAGACATCCTACTCT
TTCAGA
Found at i:686804 original size:200 final size:198
Alignment explanation
Indices: 686380--686914 Score: 512
Period size: 200 Copynumber: 2.7 Consensus size: 198
686370 ACATCCAGTT
* * * * * * *
686380 CTTTGAAGACTAAAAGGATAAAAAGTGCCACCAGCTCGTGTGGGCTTT-GAAAAGAATAAGGTAT
1 CTTTAAAGACTAAAAGGATAAAAGGTGCCACCAGATTGCGTGGACTTTAG-AAAG---AA-GCAT
* * * * * *
686444 CCTGCTCTTTAAGGACAAAAAAGGATAAAAGGGGTGCCACCAACTTGTGTGGG-CTTTAAA-AAA
61 CCTACTCTTTCAGAAC-TAAAAGGATAAAA--AGTGCCACCAACTTGTGTGGGCCTTAAAAGAAA
* * * *
686507 ACGTC--CTACTCTTTAAAGACTAAAAGGATAAAAGGTGCCACCAGCTTGCGTGGGCTTTAGAAA
123 AAGCCATCTACTCTTTAAAGACTAAAAGAATAAAAGGTGCCACCAGCTTGCGTAGGCTTTAGAAA
* *
686570 GACGTCCTACT
188 GACATCCTACG
* *
686581 CTTTAAAGACTAAAAGGATAAAAGGTGCCACCAGCTTGCGTGGGCTTTAGAAAG-A-CATCCTAC
1 CTTTAAAGACTAAAAGGATAAAAGGTGCCACCAGATTGCGTGGACTTTAGAAAGAAGCATCCTAC
* *
686644 TCTTTCAGAACTAAAAGGA-AAGAAAGTGCCACCAGCTTGTGTGGGCCTTAAAAGAAAAAGGCAT
66 TCTTTCAGAACTAAAAGGATAA-AAAGTGCCACCAACTTGTGTGGGCCTTAAAAGAAAAAGCCAT
** *
686708 CTAGCTCTTTGAAA-ACTAAAAAGAATAAAAGGGTTGCCACCAGCTTGTTTAGGCTTTCGAAAGA
130 CTA-CTCTTT-AAAGACT-AAAAGAATAAAA-GG-TGCCACCAGCTTGCGTAGGCTTTAGAAAGA
*
686772 TATCCTACG
190 CATCCTACG
* * * *
686781 CTTTGAGGACTAAAAGGATAAAAGGTGCCACTAGATTGTGTGGACTTTAGAAAGAAAAAGGCATC
1 CTTTAAAGACTAAAAGGATAAAAGGTGCCACCAGATTGCGTGGACTTTAGAAAG---AA-GCATC
* * * * * *
686846 TTACTCTTTGAGGACTAAAATGATAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAGC
62 CTACTCTTTCAGAACTAAAAGGATAAAAAGTGCCACCAACTTGTGTGGGCCTTAAAAGAAAAAGC
686911 CATC
127 CATC
686915 CTGCTTTGTG
Statistics
Matches: 280, Mismatches: 36, Indels: 31
0.81 0.10 0.09
Matches are distributed among these distances:
192 19 0.07
193 8 0.03
194 15 0.05
195 15 0.05
196 3 0.01
197 10 0.04
198 14 0.05
199 2 0.01
200 80 0.29
201 48 0.17
202 1 0.00
204 1 0.00
206 62 0.22
207 2 0.01
ACGTcount: A:0.36, C:0.18, G:0.23, T:0.24
Consensus pattern (198 bp):
CTTTAAAGACTAAAAGGATAAAAGGTGCCACCAGATTGCGTGGACTTTAGAAAGAAGCATCCTAC
TCTTTCAGAACTAAAAGGATAAAAAGTGCCACCAACTTGTGTGGGCCTTAAAAGAAAAAGCCATC
TACTCTTTAAAGACTAAAAGAATAAAAGGTGCCACCAGCTTGCGTAGGCTTTAGAAAGACATCCT
ACG
Found at i:686864 original size:70 final size:70
Alignment explanation
Indices: 686310--687192 Score: 621
Period size: 64 Copynumber: 12.8 Consensus size: 70
686300 TGTCATGTTT
* * * * *
686310 TTTGAGGAC-AAAAGGGCTAAAAGGTGCCACCAGCTTGTGTGAGTTTTAGAAAAAGAAAAGACAT
1 TTTGAGGACTAAAA-GGATAAAAGGTGCCACCAGCTTGTGTGGGCTTTAGAAAGA-AAAAGGCAT
*
686374 CC-AGTTC
64 CCTA-CTC
* * * * *
686381 TTTGAAGACTAAAAGGATAAAAAGTGCCACCAGCTCGTGTGGGCTTT-GAAAAGAATAAGGTATC
1 TTTGAGGACTAAAAGGATAAAAGGTGCCACCAGCTTGTGTGGGCTTTAG-AAAGAAAAAGGCATC
*
686445 CTGCTC
65 CTACTC
* * * *
686451 TTTAAGGACAAAAAAGGATAAAAGGGGTGCCACCAACTTGTGTGGGCTTT---AA-AAAAA--CG
1 TTTGAGGAC-TAAAAGGATAAAA--GGTGCCACCAGCTTGTGTGGGCTTTAGAAAGAAAAAGGCA
686510 TCCTACTC
63 TCCTACTC
* * * *
686518 TTTAAAGACTAAAAGGATAAAAGGTGCCACCAGCTTGCGTGGGCTTTAGAAAG----A--CGTCC
1 TTTGAGGACTAAAAGGATAAAAGGTGCCACCAGCTTGTGTGGGCTTTAGAAAGAAAAAGGCATCC
686577 TACTC
66 TACTC
* * *
686582 TTTAAAGACTAAAAGGATAAAAGGTGCCACCAGCTTGCGTGGGCTTTAGAAAG----A--CATCC
1 TTTGAGGACTAAAAGGATAAAAGGTGCCACCAGCTTGTGTGGGCTTTAGAAAGAAAAAGGCATCC
686641 TACTC
66 TACTC
* * * *
686646 TTTCAGAACTAAAAGGA-AAGAAAGTGCCACCAGCTTGTGTGGGCCTTA-AAAGAAAAAGGCAT-
1 TTTGAGGACTAAAAGGATAA-AAGGTGCCACCAGCTTGTGTGGGCTTTAGAAAGAAAAAGGCATC
686708 CTAGCTC
65 CTA-CTC
** * * * * *
686715 TTTGAAAACTAAAAAGAATAAAAGGGTTGCCACCAGCTTGTTTAGGCTTTCGAAAG----A--TA
1 TTTGAGGACT-AAAAGGATAAAA-GG-TGCCACCAGCTTGTGTGGGCTTTAGAAAGAAAAAGGCA
*
686774 TCCTACGC
63 TCCTACTC
* * * *
686782 TTTGAGGACTAAAAGGATAAAAGGTGCCACTAGATTGTGTGGACTTTAGAAAGAAAAAGGCATCT
1 TTTGAGGACTAAAAGGATAAAAGGTGCCACCAGCTTGTGTGGGCTTTAGAAAGAAAAAGGCATCC
686847 TACTC
66 TACTC
* * *
686852 TTTGAGGACTAAAATGATAAAAGGTGCCACCAACTTGTGTGGGCTTTA-AAAGAAAAAGCCATCC
1 TTTGAGGACTAAAAGGATAAAAGGTGCCACCAGCTTGTGTGGGCTTTAGAAAGAAAAAGGCATCC
*
686916 TGCT-
66 TACTC
* * * * *
686920 TTGTGAGGACTTAAAAGGATAAAATGGGCGCCACCAACTTGTATGAGCTTTAGAAAAAAGAAAAG
1 TT-TGAGGAC-TAAAAGGATAAAA--GGTGCCACCAGCTTGTGTGGGCTTTAG-AAAGA-AAAAG
* * *
686985 ACGTCCTGCTC
60 GCATCCTACTC
* * * ** * * * *
686996 TTTAAGGATTGAAAA-GATAAAAAGTGCCACCAAATTATGTTGGCTTTAAAAAGAAAAAGGCGTC
1 TTTGAGGACT-AAAAGGATAAAAGGTGCCACCAGCTTGTGTGGGCTTTAGAAAGAAAAAGGCATC
* * *
687060 TTGCTT
65 CTACTC
* * * * *
687066 TTTAAGGACTAAAAAAGATAAAAAAGGGTGCCACTAGCTTGTGTGGGCTTCAAACAAGAAAAA-G
1 TTTGAGGACT-AAAAGGAT--AAAA-GGTGCCACCAGCTTGTGTGGGCTTTAGA-AAGAAAAAGG
** *
687130 CATTTTGCTC
61 CATCCTACTC
* * * * *
687140 TTTGAAGACTAAAAAG-TAAAAGGTGCTACCAGCTTGTGTGGGATTTAAAAAGA
1 TTTGAGGACTAAAAGGATAAAAGGTGCCACCAGCTTGTGTGGGCTTTAGAAAGA
687193 GTTTAAGTTT
Statistics
Matches: 666, Mismatches: 102, Indels: 91
0.78 0.12 0.11
Matches are distributed among these distances:
63 6 0.01
64 159 0.24
65 2 0.00
66 23 0.03
67 30 0.05
68 13 0.02
69 67 0.10
70 120 0.18
71 62 0.09
72 67 0.10
73 36 0.05
74 49 0.07
75 30 0.05
76 2 0.00
ACGTcount: A:0.37, C:0.16, G:0.23, T:0.24
Consensus pattern (70 bp):
TTTGAGGACTAAAAGGATAAAAGGTGCCACCAGCTTGTGTGGGCTTTAGAAAGAAAAAGGCATCC
TACTC
Found at i:686955 original size:206 final size:203
Alignment explanation
Indices: 686380--687192 Score: 651
Period size: 206 Copynumber: 4.0 Consensus size: 203
686370 ACATCCAGTT
* * *
686380 CTTTGAAGACTAAAAGGATAAAAAGTGCCACCAGCTCGTGTGGGCTTT-GAAAAGAATAAGGTAT
1 CTTTGAAGACTAAAAGGATAAAAGGTGCCACCAGCTTGTGTGGGCTTTAG-AAAGAA-AAGGCAT
* *
686444 CCTGCTCTTTAAGGACAAAAAAGGATAAAAGGGGTGCCACCAACTTGTGTGGGCTTT--AA-AAA
64 CCTACTCTTTAAGGAC-TAAAAGGATAAAA--GGTGCCACCAACTTGTGTGGGCTTTAAAAGAAA
* * * * *
686506 AA-CGTCCTACTCTTTAAAGAC-TAAAAGGATAAAA-GGTGCCACCAGCTTGCGTGGGCTTTAGA
126 AAGCATCCTGCTCTTTGAAGACTTAAAAGGATAAAAGGGTGCCACCAGCTTGTGTAGGCTTTAGA
* *
686568 AAGACGTCCTACT
191 AAGACATCCTACG
* *
686581 CTTTAAAGACTAAAAGGATAAAAGGTGCCACCAGCTTGCGTGGGCTTTAGAAAG---A--CATCC
1 CTTTGAAGACTAAAAGGATAAAAGGTGCCACCAGCTTGTGTGGGCTTTAGAAAGAAAAGGCATCC
* * * * *
686641 TACTCTTTCAGAACTAAAAGGA-AAGAAAGTGCCACCAGCTTGTGTGGGCCTTAAAAGAAAAAGG
66 TACTCTTTAAGGACTAAAAGGATAA-AAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAA-G
* * * * *
686705 CAT-CTAGCTCTTTGAAAACTAAAAAGAATAAAAGGGTTGCCACCAGCTTGTTTAGGCTTTCGAA
129 CATCCT-GCTCTTTGAAGACTTAAAAGGATAAAAGGG-TGCCACCAGCTTGTGTAGGCTTTAGAA
*
686769 AGATATCCTACG
192 AGACATCCTACG
* * * *
686781 CTTTGAGGACTAAAAGGATAAAAGGTGCCACTAGATTGTGTGGACTTTAGAAAGAAAAAGGCATC
1 CTTTGAAGACTAAAAGGATAAAAGGTGCCACCAGCTTGTGTGGGCTTTAGAAAG-AAAAGGCATC
* * *
686846 TTACTCTTTGAGGACTAAAATGATAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAGC
65 CTACTCTTTAAGGACTAAAAGGATAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAG-
* * * *
686911 CATCCTGCT-TTGTGAGGACTTAAAAGGATAAAATGGGCGCCACCAACTTGTAT-GAGCTTTAGA
129 CATCCTGCTCTT-TGAAGACTTAAAAGGATAAAA-GGGTGCCACCAGCTTGTGTAG-GCTTT---
* * *
686974 AAAAAGAAAAGACGTCCTGCT
188 ----AG-AAAGACATCCTACG
* * ** * * * *
686995 CTTT-AAGGATTGAAAA-GATAAAAAGTGCCACCAAATTATGTTGGCTTTAAAAAGAAAAAGGCG
1 CTTTGAA-GACT-AAAAGGATAAAAGGTGCCACCAGCTTGTGTGGGCTTTAGAAAG-AAAAGGCA
* * * * * * *
687058 TCTTGCTTTTTAAGGACTAAAAAAGATAAAAAAGGGTGCCACTAGCTTGTGTGGGCTTCAAACAA
63 TCCTACTCTTTAAGGACT-AAAAGGAT--AAAA-GGTGCCACCAACTTGTGTGGGCTT-TAA-AA
** * * * *
687123 GAAAAAGCATTTTGCTCTTTGAAGAC-TAAAAAG-TAAAA-GGTGCTACCAGCTTGTGTGGGATT
122 GAAAAAGCATCCTGCTCTTTGAAGACTTAAAAGGATAAAAGGGTGCCACCAGCTTGTGTAGGCTT
*
687185 TAAAAAGA
187 TAGAAAGA
687193 GTTTAAGTTT
Statistics
Matches: 494, Mismatches: 77, Indels: 76
0.76 0.12 0.12
Matches are distributed among these distances:
192 22 0.04
193 2 0.00
194 11 0.02
195 20 0.04
196 2 0.00
197 13 0.03
198 11 0.02
199 2 0.00
200 80 0.16
201 48 0.10
202 1 0.00
204 1 0.00
205 4 0.01
206 98 0.20
207 12 0.02
208 1 0.00
213 2 0.00
214 71 0.14
215 29 0.06
216 1 0.00
217 9 0.02
218 28 0.06
219 15 0.03
220 11 0.02
ACGTcount: A:0.37, C:0.16, G:0.23, T:0.24
Consensus pattern (203 bp):
CTTTGAAGACTAAAAGGATAAAAGGTGCCACCAGCTTGTGTGGGCTTTAGAAAGAAAAGGCATCC
TACTCTTTAAGGACTAAAAGGATAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAGCA
TCCTGCTCTTTGAAGACTTAAAAGGATAAAAGGGTGCCACCAGCTTGTGTAGGCTTTAGAAAGAC
ATCCTACG
Found at i:687011 original size:75 final size:71
Alignment explanation
Indices: 686856--687088 Score: 169
Period size: 70 Copynumber: 3.3 Consensus size: 71
686846 TTACTCTTTG
* * * * *
686856 AGGAC-TAAAATGATAAAA--GGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAGCCATCCTG
1 AGGACTTAAAA-GATAAAATGGGCGCCACCAACTTGTATGAGCTTTAAAAAAAAAAGACATCCTG
*
686918 CTTTGTG
65 CTTTGTA
*
686925 AGGACTTAAAAGGATAAAATGGGCGCCACCAACTTGTATGAGCTTTAGAAAAAAGAAAAGACGTC
1 AGGACTTAAAA-GATAAAATGGGCGCCACCAACTTGTATGAGCTTT--AAAAAA-AAAAGACATC
686990 CTGCTCTT-TA
62 CTGCT-TTGTA
* * * * *
687000 AGGA-TTGAAAAGATAAAA--AGTGCCACCAAATTATGT-TG-GCTTTAAAAAGAAAAAGGCGTC
1 AGGACTT-AAAAGATAAAATGGGCGCCACC-AACT-TGTATGAGCTTTAAAAA-AAAAAGACATC
* *
687060 TTGCTTTTTA
62 CTGCTTTGTA
*
687070 AGGACTAAAAAAGATAAAA
1 AGGACT-TAAAAGATAAAA
687089 AAGGGTGCCA
Statistics
Matches: 136, Mismatches: 14, Indels: 26
0.77 0.08 0.15
Matches are distributed among these distances:
69 7 0.05
70 36 0.26
71 13 0.10
72 34 0.25
73 5 0.04
74 17 0.12
75 22 0.16
76 2 0.01
ACGTcount: A:0.40, C:0.15, G:0.21, T:0.24
Consensus pattern (71 bp):
AGGACTTAAAAGATAAAATGGGCGCCACCAACTTGTATGAGCTTTAAAAAAAAAAGACATCCTGC
TTTGTA
Found at i:687139 original size:144 final size:141
Alignment explanation
Indices: 686786--687189 Score: 361
Period size: 144 Copynumber: 2.8 Consensus size: 141
686776 CTACGCTTTG
* * * *
686786 AGGACT-AAAAGGAT-AAAA-GGTGCCACTAGATTGTGTGGACTTTAGAAAGAAAAAGGCATCTT
1 AGGACTAAAAAAGATAAAAAGGGTGCCACTAGCTTGTGTGGGCTTTAAAAAGAAAAA-GCATCTT
* * * * *
686848 ACTCTTTGAGGACTAAAATGATAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAGCCA
65 GCTCTTTAAGGACTAAAATGATAAAAAGTGCCACCAAATTATGTGGGCTTTAAAAGAAAAAGCCA
*
686913 TCCTGCTTTGTG
130 TCCTGCTTTGTA
* * * * * * * * * *
686925 AGGACTTAAAAGGATAAAATGGGCGCCACCAACTTGTATGAGCTTTAGAAAAAAGAAAAGACGTC
1 AGGACTAAAAAAGATAAAAAGGGTGCCACTAGCTTGTGTGGGCTTTA-AAAAGA-AAAAG-CATC
* * *
686990 CTGCTCTTTAAGGATTGAAAA-GATAAAAAGTGCCACCAAATTATGTTGGCTTTAAAAAGAAAAA
63 TTGCTCTTTAAGGACT-AAAATGATAAAAAGTGCCACCAAATTATGTGGGCTTT-AAAAGAAAAA
* * * *
687054 GGCGTCTTGCTTTTTA
126 GCCATCCTGCTTTGTA
* *
687070 AGGACTAAAAAAGATAAAAAAGGGTGCCACTAGCTTGTGTGGGCTTCAAACAAGAAAAAGCATTT
1 AGGACTAAAAAAGAT-AAAAAGGGTGCCACTAGCTTGTGTGGGCTTTAAA-AAGAAAAAGCATCT
* * * ** * *
687135 TGCTCTTTGAA-GACTAAAAAG-TAAAAGGTGCTACCAGCTTGTGTGGGATTTAAAA
64 TGCTCTTT-AAGGACTAAAATGATAAAAAGTGCCACCAAATTATGTGGGCTTTAAAA
687190 AGAGTTTAAG
Statistics
Matches: 208, Mismatches: 45, Indels: 21
0.76 0.16 0.08
Matches are distributed among these distances:
139 6 0.03
140 8 0.04
141 3 0.01
142 23 0.11
143 32 0.15
144 61 0.29
145 47 0.23
146 28 0.13
ACGTcount: A:0.38, C:0.14, G:0.23, T:0.25
Consensus pattern (141 bp):
AGGACTAAAAAAGATAAAAAGGGTGCCACTAGCTTGTGTGGGCTTTAAAAAGAAAAAGCATCTTG
CTCTTTAAGGACTAAAATGATAAAAAGTGCCACCAAATTATGTGGGCTTTAAAAGAAAAAGCCAT
CCTGCTTTGTA
Found at i:691045 original size:13 final size:13
Alignment explanation
Indices: 691027--691051 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
691017 ATTTTGCTTA
691027 GTATCGATACATT
1 GTATCGATACATT
691040 GTATCGATACAT
1 GTATCGATACAT
691052 AAAACTGACA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
GTATCGATACATT
Found at i:691126 original size:32 final size:32
Alignment explanation
Indices: 691083--691211 Score: 143
Period size: 32 Copynumber: 4.0 Consensus size: 32
691073 TCTTTTTTTT
691083 ACTGTTCATCACTATTCATGTATCGATACATC
1 ACTGTTCATCACTATTCATGTATCGATACATC
*
691115 ACTGTTTATCACTATTCATGTATCGATACATC
1 ACTGTTCATCACTATTCATGTATCGATACATC
* * * * * *
691147 ATTGTTTATTACTGTTCATGTATC-ACTATTTATT
1 ACTGTTCATCACTATTCATGTATCGA-TA--CATC
* *
691181 ACTGTTCATCACTGTTCATGTATCGGTACAT
1 ACTGTTCATCACTATTCATGTATCGATACAT
691212 TAGATCGATA
Statistics
Matches: 82, Mismatches: 11, Indels: 8
0.81 0.11 0.08
Matches are distributed among these distances:
31 1 0.01
32 56 0.68
34 25 0.30
ACGTcount: A:0.26, C:0.20, G:0.11, T:0.43
Consensus pattern (32 bp):
ACTGTTCATCACTATTCATGTATCGATACATC
Found at i:694431 original size:3 final size:3
Alignment explanation
Indices: 694423--694447 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
694413 ATCAAAGATA
694423 ATG ATG ATG ATG ATG ATG ATG ATG A
1 ATG ATG ATG ATG ATG ATG ATG ATG A
694448 AGAACTTGAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.36, C:0.00, G:0.32, T:0.32
Consensus pattern (3 bp):
ATG
Found at i:695839 original size:13 final size:13
Alignment explanation
Indices: 695821--695846 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
695811 CAATTTTTTG
695821 TGTATCGATACAT
1 TGTATCGATACAT
695834 TGTATCGATACAT
1 TGTATCGATACAT
695847 ACTTGTTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:696596 original size:21 final size:21
Alignment explanation
Indices: 696555--696598 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
696545 TTCCCCTTTA
* *
696555 TCTCCCCCGTTTATTAATAAT
1 TCTCCCCCGTTAATCAATAAT
696576 TCTCCCCC-TTAATCAAGTAAT
1 TCTCCCCCGTTAATCAA-TAAT
696597 TC
1 TC
696599 ATATCAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 6 0.30
21 14 0.70
ACGTcount: A:0.25, C:0.32, G:0.05, T:0.39
Consensus pattern (21 bp):
TCTCCCCCGTTAATCAATAAT
Found at i:698421 original size:13 final size:13
Alignment explanation
Indices: 698403--698428 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
698393 ATAATCACCC
698403 TGTATCGATACAA
1 TGTATCGATACAA
698416 TGTATCGATACAA
1 TGTATCGATACAA
698429 AGAAAAATGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:698485 original size:20 final size:20
Alignment explanation
Indices: 698414--698493 Score: 79
Period size: 20 Copynumber: 3.8 Consensus size: 20
698404 GTATCGATAC
*
698414 AATGTATCGATACAAAGAAA
1 AATGTATCGATACATAGAAA
*
698434 AATGTATCGATACATTGAATTTCCA
1 AATGTATCGATACATAGAA-----A
*
698459 GATGTATCGATACATAGAAA
1 AATGTATCGATACATAGAAA
*
698479 CATGTATCGATACAT
1 AATGTATCGATACAT
698494 TTTGGACATT
Statistics
Matches: 50, Mismatches: 5, Indels: 10
0.77 0.08 0.15
Matches are distributed among these distances:
20 32 0.64
25 18 0.36
ACGTcount: A:0.42, C:0.14, G:0.15, T:0.29
Consensus pattern (20 bp):
AATGTATCGATACATAGAAA
Found at i:700468 original size:20 final size:20
Alignment explanation
Indices: 700445--700517 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
700435 ACAACTCAAA
700445 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
****
700465 GTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCA-AT
700486 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
700506 GTATCGATACAT
1 GTATCGATACAT
700518 AAAAAAAGAT
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.32
Consensus pattern (20 bp):
GTATCGATACATGTTGCAAT
Found at i:700496 original size:41 final size:42
Alignment explanation
Indices: 700445--700539 Score: 174
Period size: 41 Copynumber: 2.3 Consensus size: 42
700435 ACAACTCAAA
*
700445 GTATCGATACATGTTGCAATGTATCGATACAT-GAAAAAGAT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAAGAT
700486 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAAGAT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAAGAT
700528 GTATCGATACAT
1 GTATCGATACAT
700540 TTCTTGGCAG
Statistics
Matches: 52, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
41 32 0.62
42 20 0.38
ACGTcount: A:0.40, C:0.13, G:0.18, T:0.29
Consensus pattern (42 bp):
GTATCGATACATGTTGCAATGTATCGATACATAAAAAAAGAT
Found at i:700596 original size:13 final size:13
Alignment explanation
Indices: 700578--700603 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
700568 TACAGCAAGT
700578 ATGTATCGATACA
1 ATGTATCGATACA
700591 ATGTATCGATACA
1 ATGTATCGATACA
700604 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:704683 original size:15 final size:15
Alignment explanation
Indices: 704663--704701 Score: 60
Period size: 15 Copynumber: 2.6 Consensus size: 15
704653 TAAAAATGTC
*
704663 CAAAATGAGGAAGCT
1 CAAAATGAAGAAGCT
704678 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
*
704693 CCAAATGAA
1 CAAAATGAA
704702 ATTGATGTAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.51, C:0.15, G:0.21, T:0.13
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:706793 original size:20 final size:21
Alignment explanation
Indices: 706715--706792 Score: 70
Period size: 20 Copynumber: 3.6 Consensus size: 21
706705 ATGTCCAAAA
*
706715 TGTATCGATACATGTTTTTG-
1 TGTATCGATACATCTTTTTGT
** *
706735 TGTATCGATACATCTGGAAATTCT
1 TGTATCGATACATCT---TTTTGT
706759 ATGTATCGATACAT-TTTTTGT
1 -TGTATCGATACATCTTTTTGT
706780 TGTATCGATACAT
1 TGTATCGATACAT
706793 TGTATCGATA
Statistics
Matches: 46, Mismatches: 7, Indels: 10
0.73 0.11 0.16
Matches are distributed among these distances:
20 27 0.59
21 3 0.07
23 2 0.04
24 1 0.02
25 13 0.28
ACGTcount: A:0.26, C:0.13, G:0.17, T:0.45
Consensus pattern (21 bp):
TGTATCGATACATCTTTTTGT
Found at i:706797 original size:13 final size:13
Alignment explanation
Indices: 706779--706817 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
706769 ACATTTTTTG
706779 TTGTATCGATACA
1 TTGTATCGATACA
706792 TTGTATCGATACA
1 TTGTATCGATACA
*
706805 CTGTATCGATACA
1 TTGTATCGATACA
706818 GGGTGATTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:708085 original size:18 final size:16
Alignment explanation
Indices: 708044--708089 Score: 74
Period size: 16 Copynumber: 2.8 Consensus size: 16
708034 AATTACTTGA
708044 TTAAGGGGGAGATTTT
1 TTAAGGGGGAGATTTT
708060 TTAAGGGGGAGATTTT
1 TTAAGGGGGAGATTTT
708076 TTAAACGGGGGAGA
1 TT-AA-GGGGGAGA
708090 CAAAGGAGAG
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
16 18 0.64
17 2 0.07
18 8 0.29
ACGTcount: A:0.28, C:0.02, G:0.39, T:0.30
Consensus pattern (16 bp):
TTAAGGGGGAGATTTT
Found at i:708720 original size:20 final size:20
Alignment explanation
Indices: 708697--708769 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
708687 ACAACTCAAA
708697 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
****
708717 GTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCA-AT
708738 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
708758 GTATCGATACAT
1 GTATCGATACAT
708770 AAAAAAAGAT
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.32
Consensus pattern (20 bp):
GTATCGATACATGTTGCAAT
Found at i:708748 original size:41 final size:42
Alignment explanation
Indices: 708697--708791 Score: 174
Period size: 41 Copynumber: 2.3 Consensus size: 42
708687 ACAACTCAAA
*
708697 GTATCGATACATGTTGCAATGTATCGATACAT-GAAAAAGAT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAAGAT
708738 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAAGAT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAAGAT
708780 GTATCGATACAT
1 GTATCGATACAT
708792 TTCTTGGCAG
Statistics
Matches: 52, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
41 32 0.62
42 20 0.38
ACGTcount: A:0.40, C:0.13, G:0.18, T:0.29
Consensus pattern (42 bp):
GTATCGATACATGTTGCAATGTATCGATACATAAAAAAAGAT
Found at i:708848 original size:13 final size:13
Alignment explanation
Indices: 708830--708855 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
708820 TACAGCAAGT
708830 ATGTATCGATACA
1 ATGTATCGATACA
708843 ATGTATCGATACA
1 ATGTATCGATACA
708856 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:709980 original size:15 final size:15
Alignment explanation
Indices: 709960--709990 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
709950 ATTTCGTTTG
*
709960 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
709975 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
709990 G
1 G
709991 GACATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Found at i:711823 original size:21 final size:21
Alignment explanation
Indices: 711788--711838 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
711778 TATGCAAGTT
*
711788 TTCATT-TTTTCTTAGCTAAC
1 TTCATTATTTTCTTAGCCAAC
711808 -TCATTATTTTCATTAGCCAAC
1 TTCATTATTTTC-TTAGCCAAC
*
711829 TTCTTTATTT
1 TTCATTATTT
711839 CAACTTGCAA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
19 5 0.19
20 5 0.19
21 8 0.31
22 8 0.31
ACGTcount: A:0.22, C:0.20, G:0.04, T:0.55
Consensus pattern (21 bp):
TTCATTATTTTCTTAGCCAAC
Found at i:714075 original size:13 final size:13
Alignment explanation
Indices: 714057--714082 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
714047 CAATTTTTTG
714057 TGTATCGATACAT
1 TGTATCGATACAT
714070 TGTATCGATACAT
1 TGTATCGATACAT
714083 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:718651 original size:21 final size:21
Alignment explanation
Indices: 718626--718680 Score: 65
Period size: 21 Copynumber: 2.6 Consensus size: 21
718616 CACTTGCAAC
*
718626 TCATTTCTTTTCTCCTCTAAT
1 TCATTTATTTTCTCCTCTAAT
**
718647 TCATTTATTTTCTTTTCTAAT
1 TCATTTATTTTCTCCTCTAAT
* *
718668 TCACTTAATTTCT
1 TCATTTATTTTCT
718681 TTTCAAGAAT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.18, C:0.22, G:0.00, T:0.60
Consensus pattern (21 bp):
TCATTTATTTTCTCCTCTAAT
Found at i:718681 original size:21 final size:21
Alignment explanation
Indices: 718641--718684 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
718631 TCTTTTCTCC
* *
718641 TCTAATTCATTTATTTTCTTT
1 TCTAATTCACTTAATTTCTTT
718662 TCTAATTCACTTAATTTCTTT
1 TCTAATTCACTTAATTTCTTT
718683 TC
1 TC
718685 AAGAATATTA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.20, C:0.18, G:0.00, T:0.61
Consensus pattern (21 bp):
TCTAATTCACTTAATTTCTTT
Found at i:720805 original size:10 final size:10
Alignment explanation
Indices: 720781--720810 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
720771 GTATCGATAC
720781 ATGAACAGT-
1 ATGAACAGTG
720790 ATGAACAGTG
1 ATGAACAGTG
720800 ATGAACAGTG
1 ATGAACAGTG
720810 A
1 A
720811 AAAATGAGAT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 9 0.45
10 11 0.55
ACGTcount: A:0.43, C:0.10, G:0.27, T:0.20
Consensus pattern (10 bp):
ATGAACAGTG
Done.