Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold316
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 597962
ACGTcount: A:0.36, C:0.15, G:0.14, T:0.35
File 1 of 5
Found at i:1433 original size:5 final size:5
Alignment explanation
Indices: 1419--1448 Score: 51
Period size: 5 Copynumber: 6.0 Consensus size: 5
1409 TCCAGATATG
*
1419 GAAAA TAAAA GAAAA GAAAA GAAAA GAAAA
1 GAAAA GAAAA GAAAA GAAAA GAAAA GAAAA
1449 CGGAGAATAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.80, C:0.00, G:0.17, T:0.03
Consensus pattern (5 bp):
GAAAA
Found at i:1703 original size:16 final size:16
Alignment explanation
Indices: 1670--1704 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
1660 TTTGGTCTGA
* *
1670 TTTTATTTTTTTTTAT
1 TTTTATTTTTTGTGAT
1686 TTTTATTTTTTGTGAT
1 TTTTATTTTTTGTGAT
1702 TTT
1 TTT
1705 AGGCTATTCA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.11, C:0.00, G:0.06, T:0.83
Consensus pattern (16 bp):
TTTTATTTTTTGTGAT
Found at i:2708 original size:44 final size:42
Alignment explanation
Indices: 2660--2767 Score: 135
Period size: 44 Copynumber: 2.5 Consensus size: 42
2650 CAGGTACGTC
* *
2660 GATATAGGTACTTTTGACACAAGTACCTTTAGCATAAGTACTTT
1 GATATAGGTACTTTTGACA-AA-TACATTTAACATAAGTACTTT
2704 GATATAGGTACTTTTAGTACAAATACATTTAACATAAGTACTTT
1 GATATAGGTACTTTT-G-ACAAATACATTTAACATAAGTACTTT
* *
2748 GATACAAGTACCTTTTGACA
1 GATATAGGTA-CTTTTGACA
2768 GCAACGTTTC
Statistics
Matches: 57, Mismatches: 4, Indels: 7
0.84 0.06 0.10
Matches are distributed among these distances:
43 3 0.05
44 43 0.75
45 8 0.14
46 3 0.05
ACGTcount: A:0.35, C:0.15, G:0.14, T:0.36
Consensus pattern (42 bp):
GATATAGGTACTTTTGACAAATACATTTAACATAAGTACTTT
Found at i:14454 original size:24 final size:24
Alignment explanation
Indices: 14427--14487 Score: 61
Period size: 24 Copynumber: 2.5 Consensus size: 24
14417 GTTATGGGTT
* *
14427 GAAAAAAAAAAG-TTAGGTAAAAAA
1 GAAAAAAAAAAGATGAAG-AAAAAA
* * *
14451 GAAAGAAAGAAGATGAAGAAGAAA
1 GAAAAAAAAAAGATGAAGAAAAAA
14475 GAAAAAAAAAAGA
1 GAAAAAAAAAAGA
14488 AAAAAATATG
Statistics
Matches: 29, Mismatches: 7, Indels: 2
0.76 0.18 0.05
Matches are distributed among these distances:
24 26 0.90
25 3 0.10
ACGTcount: A:0.72, C:0.00, G:0.21, T:0.07
Consensus pattern (24 bp):
GAAAAAAAAAAGATGAAGAAAAAA
Found at i:14851 original size:24 final size:23
Alignment explanation
Indices: 14837--14880 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
14827 TTGCATTTGT
*
14837 TTTTTTTT-TATTATTATCATATA
1 TTTTTTTTGTTTTATT-TCATATA
14860 TTTTTTTTGTTTTATTT-ATAT
1 TTTTTTTTGTTTTATTTCATAT
14881 GTATATATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
22 4 0.21
23 9 0.47
24 6 0.32
ACGTcount: A:0.20, C:0.02, G:0.02, T:0.75
Consensus pattern (23 bp):
TTTTTTTTGTTTTATTTCATATA
Found at i:22335 original size:27 final size:27
Alignment explanation
Indices: 22296--22841 Score: 860
Period size: 27 Copynumber: 20.0 Consensus size: 27
22286 AGTGTGACCT
* * *
22296 CTTTAAAGCCCACAACTTCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
22323 CTTTTAAGTCCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
*
22350 CTTTTAAAGTCCACAACTCCGTGGCATC
1 CTTTT-AAGTCCACAACTCCGTGGCACC
*
22378 CTTTTAAGTCCACAACTCTGTGG-ACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
22404 CTTTTAAAGTCCACAACTCCGTGGCACC
1 CTTTT-AAGTCCACAACTCCGTGGCACC
* *
22432 CTTTTTAGTCCACAACTCTGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
22459 CTTTTAAGTCCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
*
22486 TTTTTAAGTCCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
22513 CTTTTAAGTCCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
*
22540 CTTTTAAGTCCACAACTCTGTGGCATCC
1 CTTTTAAGTCCACAACTCCGTGGCA-CC
*
22568 CTGTTTAAGACCACAACTCCGTGGCACC
1 CT-TTTAAGTCCACAACTCCGTGGCACC
* * **
22596 CTTTTAAGTCCATAACTTCGTGGCATT
1 CTTTTAAGTCCACAACTCCGTGGCACC
22623 CTTTTAAGTCCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
*
22650 TTTTTAAGTCCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
22677 CTTTTAAGTCCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
22704 CTTTTAAGTCCACAACTCCGTGGCATCC
1 CTTTTAAGTCCACAACTCCGTGGCA-CC
22732 CTTTTAAGTCCACAACTCCGTGGCATCC
1 CTTTTAAGTCCACAACTCCGTGGCA-CC
*
22760 CTTTTAAGTCCACAACTCTGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
*
22787 CTTTTAAGTCCACAACTCCGTGGCATC
1 CTTTTAAGTCCACAACTCCGTGGCACC
* *
22814 CTTTTAAATCCACAACTCTGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
22841 C
1 C
22842 ATTTCAAAGC
Statistics
Matches: 480, Mismatches: 33, Indels: 12
0.91 0.06 0.02
Matches are distributed among these distances:
26 7 0.01
27 356 0.74
28 96 0.20
29 21 0.04
ACGTcount: A:0.23, C:0.34, G:0.15, T:0.28
Consensus pattern (27 bp):
CTTTTAAGTCCACAACTCCGTGGCACC
Found at i:22643 original size:164 final size:163
Alignment explanation
Indices: 22296--22841 Score: 893
Period size: 164 Copynumber: 3.3 Consensus size: 163
22286 AGTGTGACCT
* * * *
22296 CTTTAAAGCCCACAACTTCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAAGTC
1 CTTTTAAGTCCACAACTCCGTGGCACCTTTTTAAGTCCACAACTCCGTGGCACCCTTTT-AAGTC
*
22361 CACAACTCCGTGGCATCCTTTTAAGTCCACAACTCTGTGG-A-CCCTTTTAAAGTCCACAACTCC
65 CACAACTCCGTGGCACCCTTTTAAGTCCACAACTCTGTGGCATCCCTTTT-AAGTCCACAACTCC
*
22424 GTGGCACCCTTTTTAGTCCACAACTCTGTGGCACC
129 GTGGCACCCTTTTAAGTCCACAACTCTGTGGCACC
22459 CTTTTAAGTCCACAACTCCGTGGCACCTTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCC
1 CTTTTAAGTCCACAACTCCGTGGCACCTTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCC
*
22524 ACAACTCCGTGGCACCCTTTTAAGTCCACAACTCTGTGGCATCCCTGTTTAAGACCACAACTCCG
66 ACAACTCCGTGGCACCCTTTTAAGTCCACAACTCTGTGGCATCCCT-TTTAAGTCCACAACTCCG
* **
22589 TGGCACCCTTTTAAGTCCATAACT-TCGTGGCATT
130 TGGCACCCTTTTAAGTCCACAACTCT-GTGGCACC
22623 CTTTTAAGTCCACAACTCCGTGGCACCTTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCC
1 CTTTTAAGTCCACAACTCCGTGGCACCTTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCC
*
22688 ACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCATCCCTTTTAAGTCCACAACTCCGT
66 ACAACTCCGTGGCACCCTTTTAAGTCCACAACTCTGTGGCATCCCTTTTAAGTCCACAACTCCGT
22753 GGCATCCCTTTTAAGTCCACAACTCTGTGGCACC
131 GGCA-CCCTTTTAAGTCCACAACTCTGTGGCACC
* *
22787 CTTTTAAGTCCACAACTCCGTGGCATCC-TTTTAAATCCACAACTCTGTGGCACCC
1 CTTTTAAGTCCACAACTCCGTGGCA-CCTTTTTAAGTCCACAACTCCGTGGCACCC
22842 ATTTCAAAGC
Statistics
Matches: 359, Mismatches: 17, Indels: 13
0.92 0.04 0.03
Matches are distributed among these distances:
162 44 0.12
163 79 0.22
164 230 0.64
165 6 0.02
ACGTcount: A:0.23, C:0.34, G:0.15, T:0.28
Consensus pattern (163 bp):
CTTTTAAGTCCACAACTCCGTGGCACCTTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCC
ACAACTCCGTGGCACCCTTTTAAGTCCACAACTCTGTGGCATCCCTTTTAAGTCCACAACTCCGT
GGCACCCTTTTAAGTCCACAACTCTGTGGCACC
Found at i:22879 original size:32 final size:32
Alignment explanation
Indices: 22824--23767 Score: 1545
Period size: 32 Copynumber: 29.8 Consensus size: 32
22814 CTTTTAAATC
* *
22824 CACAACTCTGTGGC-ACCCATTTCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
22855 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
22887 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
*
22919 CACAAGTCGGTGGCAACCCATTCCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
*
22951 CACAAGTCGGTGGCAACCCATTCCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
*
22983 CACAAGTCGGTGGCAACCCATTCCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
23015 CACAAGTCGGTGGCAACCCATTTCAAAG-CCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
23046 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
23078 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
23110 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
23142 CACAAGTCGGTGGCAACCCA-TTCTAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTC-AAAGCCCA
*
23174 CACAAGTAGGTGGCAACCCATTTCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
**
23206 CACAAGTCGGTGGCAACCTTTTTCAAAGCCC-
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
* *
23237 CAGAAGTTGGTGGC-ACCCATTTC-AAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
*
23267 CACAAGTCGGTGGCAA-CCATTTCAAAGCACA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
23298 CACAAGTCGGTGGCAACCCATTTC-AAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
*
23329 CACAAGTCGGTGGCAACCCATTCCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
*
23361 CACAAGTCGGTGGCAACCCA-TCCAAAG-CCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
*
23391 CACAAGTCGGTGGCAACCCATTCCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
23423 CACAAGTCGGTGGCAA-CCATTTCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
23454 CACAAGTCGGTGGCAACCCATTTC-AAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
23485 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
23517 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
23549 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
23581 CACAAGTCGGTGGCAACCCA-TTCTAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTC-AAAGCCCA
*
23613 CACAAGTAGGTGGCAACCCATTTCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
** *
23645 CACAAGTCGGTGGCAACCTTTTTCAAAGCCCC
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
* * *
23677 CAGAAGTTGGTGGCAACCCATTTAAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
* *
23709 CGCAAGTCGGTGGCAACCCATTTAAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
* * *
23741 CGCAAGTCAGTGGCAACCCTTTTCAAA
1 CACAAGTCGGTGGCAACCCATTTCAAA
23768 TCACCATTTT
Statistics
Matches: 863, Mismatches: 35, Indels: 29
0.93 0.04 0.03
Matches are distributed among these distances:
29 6 0.01
30 49 0.06
31 188 0.22
32 614 0.71
33 6 0.01
ACGTcount: A:0.31, C:0.34, G:0.19, T:0.16
Consensus pattern (32 bp):
CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
Found at i:28466 original size:20 final size:19
Alignment explanation
Indices: 28441--28491 Score: 57
Period size: 20 Copynumber: 2.6 Consensus size: 19
28431 TGAGCTAACA
28441 ATTATAATTAATATAATTGT
1 ATTATAATTAATATAA-TGT
* *
28461 ATTATAATAAAAATAATGT
1 ATTATAATTAATATAATGT
* *
28480 AATACAATTAAT
1 ATTATAATTAAT
28492 TTATCATTTT
Statistics
Matches: 25, Mismatches: 6, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
19 11 0.44
20 14 0.56
ACGTcount: A:0.53, C:0.02, G:0.04, T:0.41
Consensus pattern (19 bp):
ATTATAATTAATATAATGT
Found at i:28537 original size:14 final size:14
Alignment explanation
Indices: 28500--28545 Score: 67
Period size: 14 Copynumber: 3.3 Consensus size: 14
28490 ATTTATCATT
28500 TTATAATTATGTTTA
1 TTATAATTA-GTTTA
28515 -TATAATTAGTTTA
1 TTATAATTAGTTTA
*
28528 TTATAATTAGTTAA
1 TTATAATTAGTTTA
28542 TTAT
1 TTAT
28546 TATGTTAACT
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
13 5 0.17
14 24 0.83
ACGTcount: A:0.37, C:0.00, G:0.07, T:0.57
Consensus pattern (14 bp):
TTATAATTAGTTTA
Found at i:29157 original size:23 final size:24
Alignment explanation
Indices: 29108--29158 Score: 68
Period size: 23 Copynumber: 2.2 Consensus size: 24
29098 AATTTTAAAA
*
29108 TAAATTTATTAAAATATTTTTACT
1 TAAATTTATTAAAATATTATTACT
* *
29132 TAAATTTATT-AATTATTATTATT
1 TAAATTTATTAAAATATTATTACT
29155 TAAA
1 TAAA
29159 AATTTAGTGA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
23 14 0.58
24 10 0.42
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (24 bp):
TAAATTTATTAAAATATTATTACT
Found at i:29397 original size:25 final size:27
Alignment explanation
Indices: 29354--29403 Score: 68
Period size: 25 Copynumber: 1.9 Consensus size: 27
29344 TATCTTTAAA
**
29354 ATTTTTAAAATAATGATAAT-TAATTT
1 ATTTTTAAAATAAAAATAATATAATTT
29380 ATTTTT-AAATAAAAATAATATAAT
1 ATTTTTAAAATAAAAATAATATAAT
29404 ATATAAGTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 11 0.52
26 10 0.48
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (27 bp):
ATTTTTAAAATAAAAATAATATAATTT
Found at i:29878 original size:21 final size:21
Alignment explanation
Indices: 29854--29895 Score: 61
Period size: 19 Copynumber: 2.1 Consensus size: 21
29844 TATTTTTCCG
*
29854 AAAACAAATTGCA-C-TTGAA
1 AAAAAAAATTGCACCTTTGAA
29873 AAAAAAAATTGCACCTTTGAA
1 AAAAAAAATTGCACCTTTGAA
29894 AA
1 AA
29896 GTGTACGCTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 12 0.60
20 1 0.05
21 7 0.35
ACGTcount: A:0.55, C:0.14, G:0.10, T:0.21
Consensus pattern (21 bp):
AAAAAAAATTGCACCTTTGAA
Found at i:30221 original size:22 final size:23
Alignment explanation
Indices: 30183--30226 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 23
30173 TTTTATTAAG
30183 ATAAAAATAAATAAATT-ATTAC
1 ATAAAAATAAATAAATTGATTAC
*
30205 ATAAATATATAAT-AATTGATTA
1 ATAAAAATA-AATAAATTGATTA
30227 AAAGATTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
22 12 0.63
23 7 0.37
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.36
Consensus pattern (23 bp):
ATAAAAATAAATAAATTGATTAC
Found at i:31393 original size:470 final size:470
Alignment explanation
Indices: 30507--31442 Score: 1818
Period size: 470 Copynumber: 2.0 Consensus size: 470
30497 TTCATCCTAT
30507 TGAACGGTGTAGACTACACAATTGCTTGTGACCTCGATAGTTTTATTTCTTTTTGCTCGAAGTGA
1 TGAACGGTGTAGACTACACAATTGCTTGTGACCTCGATAGTTTTATTTCTTTTTGCTCGAAGTGA
30572 AATCAAATAATTAAGCTTAGACTTATGCAGTTTCTTGAAAGATTTCAATAACTTACCATACAAAA
66 AATCAAATAATTAAGCTTAGACTTATGCAGTTTCTTGAAAGATTTCAATAACTTACCATACAAAA
30637 TATTTGTTTGTAATACAGTTATATTCAAAGATCCGAATCAAAAATACTAGGTGTAGACACAAAAT
131 TATTTGTTTGTAATACAGTTATATTCAAAGATCCGAATCAAAAATACTAGGTGTAGACACAAAAT
*
30702 TTTGTCCGATCATTTTTTTTAAGATACTCATTTTTTTAATAAATCAGGTTATCTTTAATTTAGAG
196 TTTGTCCGATCATTTTTTTTAAGATACTCATTTTTTTAATAAATCAGGTCATCTTTAATTTAGAG
30767 TTGTAGGATCCAAATTAATTGAACTTATTTCTTTTAATTTGGATTTTAAAAAAAAGAAGGGTGCA
261 TTGTAGGATCCAAATTAATTGAACTTATTTCTTTTAATTTGGATTTTAAAAAAAAGAAGGGTGCA
30832 ACACGAGGACTTCCCAAGAGGTTACCCATCCTAGTACTACTCTTGCCCAAGCACGCTTAACTACG
326 ACACGAGGACTTCCCAAGAGGTTACCCATCCTAGTACTACTCTTGCCCAAGCACGCTTAACTACG
30897 GAGTTCTGATGGGATCCGACGCATTAGTGCTGGTATGGTCGCACCCATCCCTTGTTGCAACAACA
391 GAGTTCTGATGGGATCCGACGCATTAGTGCTGGTATGGTCGCACCCATCCCTTGTTGCAACAACA
30962 AACTACAAATGCTTG
456 AACTACAAATGCTTG
30977 TGAACGGTGTAGACTACACAATTGCTTGTGACCTCGATAGTTTTATTTCTTTTTGCTCGAAGTGA
1 TGAACGGTGTAGACTACACAATTGCTTGTGACCTCGATAGTTTTATTTCTTTTTGCTCGAAGTGA
*
31042 AATCAAATAATTAAGCTTAGACTTATGCAGTTTCTTGAAAGATTTTAATAACTTACCATACAAAA
66 AATCAAATAATTAAGCTTAGACTTATGCAGTTTCTTGAAAGATTTCAATAACTTACCATACAAAA
31107 TATTTGTTTGTAATACAGTTATATTCAAAGATCCGAATCAAAAATACTAGGTGTAGACACAAAAT
131 TATTTGTTTGTAATACAGTTATATTCAAAGATCCGAATCAAAAATACTAGGTGTAGACACAAAAT
31172 TTTGTCCGATCATTTTTTTTAAGATACTCATTTTTTTAATAAATCAGGTCATCTTTAATTTAGAG
196 TTTGTCCGATCATTTTTTTTAAGATACTCATTTTTTTAATAAATCAGGTCATCTTTAATTTAGAG
31237 TTGTAGGATCCAAATTAATTGAACTTATTTCTTTTAATTTGGATTTTAAAAAAAAGAAGGGTGCA
261 TTGTAGGATCCAAATTAATTGAACTTATTTCTTTTAATTTGGATTTTAAAAAAAAGAAGGGTGCA
* *
31302 ACACGAGGATTTCCCAAGAGGTTACCCATCCTAGTACTACTTTTGCCCAAGCACGCTTAACTACG
326 ACACGAGGACTTCCCAAGAGGTTACCCATCCTAGTACTACTCTTGCCCAAGCACGCTTAACTACG
**
31367 GAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGGTCGCACCCATCCCTTGTTGCAACAACA
391 GAGTTCTGATGGGATCCGACGCATTAGTGCTGGTATGGTCGCACCCATCCCTTGTTGCAACAACA
31432 AACTACAAATG
456 AACTACAAATG
31443 TCATTCTTCC
Statistics
Matches: 460, Mismatches: 6, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
470 460 1.00
ACGTcount: A:0.32, C:0.17, G:0.16, T:0.34
Consensus pattern (470 bp):
TGAACGGTGTAGACTACACAATTGCTTGTGACCTCGATAGTTTTATTTCTTTTTGCTCGAAGTGA
AATCAAATAATTAAGCTTAGACTTATGCAGTTTCTTGAAAGATTTCAATAACTTACCATACAAAA
TATTTGTTTGTAATACAGTTATATTCAAAGATCCGAATCAAAAATACTAGGTGTAGACACAAAAT
TTTGTCCGATCATTTTTTTTAAGATACTCATTTTTTTAATAAATCAGGTCATCTTTAATTTAGAG
TTGTAGGATCCAAATTAATTGAACTTATTTCTTTTAATTTGGATTTTAAAAAAAAGAAGGGTGCA
ACACGAGGACTTCCCAAGAGGTTACCCATCCTAGTACTACTCTTGCCCAAGCACGCTTAACTACG
GAGTTCTGATGGGATCCGACGCATTAGTGCTGGTATGGTCGCACCCATCCCTTGTTGCAACAACA
AACTACAAATGCTTG
Found at i:32522 original size:22 final size:23
Alignment explanation
Indices: 32497--32543 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 23
32487 TTTTAATATG
32497 TCCAGCATCTCATTGAATG-TTA
1 TCCAGCATCTCATTGAATGATTA
* * *
32519 TCCATCATTTCATTGTATGATTA
1 TCCAGCATCTCATTGAATGATTA
32542 TC
1 TC
32544 ATATATGTCA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
22 16 0.76
23 5 0.24
ACGTcount: A:0.26, C:0.21, G:0.11, T:0.43
Consensus pattern (23 bp):
TCCAGCATCTCATTGAATGATTA
Found at i:35157 original size:39 final size:40
Alignment explanation
Indices: 35109--35204 Score: 122
Period size: 39 Copynumber: 2.4 Consensus size: 40
35099 AAAGTTGAGT
* *
35109 TGGCCAGCAAGAATGACAATGTTGTTTCC-AGTGCAGCCA
1 TGGCGAGCAAGAATGACAATGTTGTTTCCTAGTGAAGCCA
* *
35148 TGGCGAGCAAGAATGATATTGTTGTTTCCATTAGTGAAGCCA
1 TGGCGAGCAAGAATGACAATGTTGTTTCC--TAGTGAAGCCA
*
35190 TAGCGAGCAAGAATG
1 TGGCGAGCAAGAATG
35205 GTGATGTTTC
Statistics
Matches: 49, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
39 26 0.53
42 23 0.47
ACGTcount: A:0.30, C:0.18, G:0.27, T:0.25
Consensus pattern (40 bp):
TGGCGAGCAAGAATGACAATGTTGTTTCCTAGTGAAGCCA
Found at i:35202 original size:42 final size:39
Alignment explanation
Indices: 35114--35204 Score: 119
Period size: 42 Copynumber: 2.3 Consensus size: 39
35104 TGAGTTGGCC
* *
35114 AGCAAGAATGACAATGTTGTTTCCAGTGCAGCCATGGCG
1 AGCAAGAATGACAATGTTGTTTCCAGTGAAGCCATAGCG
* *
35153 AGCAAGAATGATATTGTTGTTTCCATTAGTGAAGCCATAGCG
1 AGCAAGAATGACAATGTTGTTTCC---AGTGAAGCCATAGCG
35195 AGCAAGAATG
1 AGCAAGAATG
35205 GTGATGTTTC
Statistics
Matches: 45, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
39 22 0.49
42 23 0.51
ACGTcount: A:0.32, C:0.16, G:0.26, T:0.25
Consensus pattern (39 bp):
AGCAAGAATGACAATGTTGTTTCCAGTGAAGCCATAGCG
Found at i:35213 original size:39 final size:40
Alignment explanation
Indices: 35138--35216 Score: 97
Period size: 42 Copynumber: 1.9 Consensus size: 40
35128 TGTTGTTTCC
* * * *
35138 AGTGCAGCCATGGCGAGCAAGAATGATATTGTTGTTTCCATT
1 AGTGAAGCCATAGCGAGCAAGAATG--AGTGATGTTTCCATT
35180 AGTGAAGCCATAGCGAGCAAGAATG-GTGATGTTTCCA
1 AGTGAAGCCATAGCGAGCAAGAATGAGTGATGTTTCCA
35217 GAGAAGCTGA
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
39 10 0.30
42 23 0.70
ACGTcount: A:0.29, C:0.16, G:0.28, T:0.27
Consensus pattern (40 bp):
AGTGAAGCCATAGCGAGCAAGAATGAGTGATGTTTCCATT
Found at i:39551 original size:50 final size:50
Alignment explanation
Indices: 39476--39573 Score: 196
Period size: 50 Copynumber: 2.0 Consensus size: 50
39466 AGGACTAAGG
39476 CAACTTTAGGTACATATATCGTAACTAAATCCATCCCTAATCATATATAT
1 CAACTTTAGGTACATATATCGTAACTAAATCCATCCCTAATCATATATAT
39526 CAACTTTAGGTACATATATCGTAACTAAATCCATCCCTAATCATATAT
1 CAACTTTAGGTACATATATCGTAACTAAATCCATCCCTAATCATATAT
39574 CAATATAACC
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 48 1.00
ACGTcount: A:0.38, C:0.22, G:0.06, T:0.34
Consensus pattern (50 bp):
CAACTTTAGGTACATATATCGTAACTAAATCCATCCCTAATCATATATAT
Found at i:45266 original size:16 final size:16
Alignment explanation
Indices: 45232--45266 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
45222 TTAATTATAA
* *
45232 TATAATATAAAATATT
1 TATAATATAAAAAACT
45248 TATAATATAAAAAACT
1 TATAATATAAAAAACT
45264 TAT
1 TAT
45267 TTTATTTATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.40
Consensus pattern (16 bp):
TATAATATAAAAAACT
Found at i:45978 original size:15 final size:17
Alignment explanation
Indices: 45937--45978 Score: 52
Period size: 16 Copynumber: 2.5 Consensus size: 17
45927 AAATAAAGTT
45937 ATATTTAATAATATTTA
1 ATATTTAATAATATTTA
*
45954 ATA-AT-ATAATATTTTA
1 ATATTTAATAATA-TTTA
45970 ATATTTAAT
1 ATATTTAAT
45979 TTAAAATGAA
Statistics
Matches: 20, Mismatches: 2, Indels: 5
0.74 0.07 0.19
Matches are distributed among these distances:
15 6 0.30
16 8 0.40
17 4 0.20
18 2 0.10
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (17 bp):
ATATTTAATAATATTTA
Found at i:46105 original size:16 final size:16
Alignment explanation
Indices: 46084--46114 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
46074 AGCAAGTTAA
*
46084 TTAACCTAATTAACAT
1 TTAACCTAATGAACAT
46100 TTAACCTAATGAACA
1 TTAACCTAATGAACA
46115 GGTTTCATGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.45, C:0.19, G:0.03, T:0.32
Consensus pattern (16 bp):
TTAACCTAATGAACAT
Found at i:48934 original size:20 final size:20
Alignment explanation
Indices: 48895--48950 Score: 78
Period size: 20 Copynumber: 2.8 Consensus size: 20
48885 TTCTACAATT
*
48895 TGTATCGATACAACAAGTCAA
1 TGTATCGATAC-ATAAGTCAA
*
48916 TGTATCAATACATAAGTCAA
1 TGTATCGATACATAAGTCAA
48936 TGTATCGATAC-TAAG
1 TGTATCGATACATAAG
48951 GCTTATTGTA
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
19 4 0.12
20 18 0.56
21 10 0.31
ACGTcount: A:0.41, C:0.16, G:0.14, T:0.29
Consensus pattern (20 bp):
TGTATCGATACATAAGTCAA
Found at i:52138 original size:52 final size:52
Alignment explanation
Indices: 52058--52245 Score: 213
Period size: 52 Copynumber: 3.7 Consensus size: 52
52048 ATTTAACTGG
* * *
52058 ATGTATCGATACATTGAAGAATATATCGATACATTTGGGTTAAAACCCTAGA
1 ATGTATCGATACAATGAAGAATGTATCGATACATTTGGGATAAAACCCTAGA
* * * *
52110 ATGTATTGATACAATGAAGAATGCATCGATACATTTAGGACGAAAACCC-AGA
1 ATGTATCGATACAATGAAGAATGTATCGATACATTTGGGA-TAAAACCCTAGA
* * *
52162 ATATATCGATACAATGAA-AATGTATCGATAAATTT-GGATCAAA-CCTAGA
1 ATGTATCGATACAATGAAGAATGTATCGATACATTTGGGATAAAACCCTAGA
* * * *
52211 ATGTATCAATACAATAAAAAATGTATTGATACATT
1 ATGTATCGATACAATGAAGAATGTATCGATACATT
52246 CTCTTTTCAG
Statistics
Matches: 115, Mismatches: 18, Indels: 8
0.82 0.13 0.06
Matches are distributed among these distances:
48 2 0.02
49 21 0.18
50 17 0.15
51 15 0.13
52 53 0.46
53 7 0.06
ACGTcount: A:0.43, C:0.13, G:0.15, T:0.29
Consensus pattern (52 bp):
ATGTATCGATACAATGAAGAATGTATCGATACATTTGGGATAAAACCCTAGA
Found at i:52242 original size:101 final size:104
Alignment explanation
Indices: 52061--52245 Score: 250
Period size: 101 Copynumber: 1.8 Consensus size: 104
52051 TAACTGGATG
* * * ** *
52061 TATCGATACATTGAAGAATATATCGATACATTTGGGTTAAAACCCTAGAATGTATTGATACAATG
1 TATCGATACAATGAAGAATATATCGATAAATTTGGGATAAAACCCTAGAATGTATCAATACAATA
*
52126 AAGAATGCATCGATACATTTAGGACGAAAACCCAGAATA
66 AAAAATGCATCGATACATTTAGGACGAAAACCCAGAATA
* *
52165 TATCGATACAATGAA-AATGTATCGATAAATTT-GGATCAAA-CCTAGAATGTATCAATACAATA
1 TATCGATACAATGAAGAATATATCGATAAATTTGGGATAAAACCCTAGAATGTATCAATACAATA
* *
52227 AAAAATGTATTGATACATT
66 AAAAATGCATCGATACATT
52246 CTCTTTTCAG
Statistics
Matches: 70, Mismatches: 11, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
101 35 0.50
102 6 0.09
103 15 0.21
104 14 0.20
ACGTcount: A:0.43, C:0.13, G:0.15, T:0.29
Consensus pattern (104 bp):
TATCGATACAATGAAGAATATATCGATAAATTTGGGATAAAACCCTAGAATGTATCAATACAATA
AAAAATGCATCGATACATTTAGGACGAAAACCCAGAATA
Found at i:53207 original size:392 final size:391
Alignment explanation
Indices: 52423--53208 Score: 1493
Period size: 392 Copynumber: 2.0 Consensus size: 391
52413 TGTATCGATA
*
52423 CATCTAGGTAAAAATATGCCAAAAGTTCTTTTTCACCGGCCACTATTGGTGCCTAACGATTGTCA
1 CATCTAGGTAAAAATATGCCAAAAGTTCTTTTTCACCGGCCACTATTGGTGCCCAACGATTGTCA
*
52488 TCCCCCATTTTATTCGTTTACCTATATATATTCGATTTCACCACCTTTGGGCATGTCTTAGATTG
66 TCCCCCATTTTATTCGTTTACCTATATATATTCGATTTCACCACCTTTGGGCATGTCTCAGATTG
52553 CTCCAAATTGGCCTTGATAAAATAAGGTGTCTACAATACTGGACCATTTCAAGGTAAAATTTTGC
131 CTCCAAATTGGCCTTGATAAAATAAGGTGTCTACAATACTGGACCATTTCAAGGTAAAATTTTGC
52618 ATTCTAGAAAAATTATATCGATACATAAGTGAATGCATCGATACTATGCTTACAATGTATTGATA
196 ATTCTAGAAAAATTATATCGATACATAAGTGAATGCATCGATACTATGCTTACAATGTATTGATA
52683 CATCACTCATTGTATCGATACATTCTGAGTTTTTGACCCAAATATATCAATCATTCTTCAATATA
261 CATCACTCATTGTATCGATACATTCTGAGTTTTTGACCCAAATATATCAATCATTCTTCAATATA
*
52748 TCGATACATGCAAACAATTTTACACATTTTATGATATTTTTATCTTTGCCATACTACATTCAATG
326 TCGATACATGCAAACAATTTTACACATTTTATGACATTTTTATCTTTGCCATACTACATTCAATG
52813 C
391 C
52814 CATCTAGGTAAAAATATGCCAAAAGTTCTTTTTCACCGGCCACTATTGGTGCCCAACGATTGTCA
1 CATCTAGGTAAAAATATGCCAAAAGTTCTTTTTCACCGGCCACTATTGGTGCCCAACGATTGTCA
52879 TCCCCCATTTTATTCGTTTACCTATATATATATTCGATTTCACCACCTTTGGGCATGTCTCAGAT
66 TCCCCCATTTTATTCGTTTACC--TATATATATTCGATTTCACCACCTTTGGGCATGTCTCAGAT
52944 TGCTCCAAATTGGCCTTGATAAAATAAGGTGTCTACAATACTGGACCATTTCAAGGTAAAATTTT
129 TGCTCCAAATTGGCCTTGATAAAATAAGGTGTCTACAATACTGGACCATTTCAAGGTAAAATTTT
* *
53009 GCATTCTAGAAAAATTATATCGATGCCTAAGTGAATGCATCGATAC-ATGCTTACAATGTATTGA
194 GCATTCTAGAAAAATTATATCGATACATAAGTGAATGCATCGATACTATGCTTACAATGTATTGA
53073 TACATCACTCATTGTATCGATACATTCTGAGTTTTTGACCCAAATATATCAATCATTCTTCAATA
259 TACATCACTCATTGTATCGATACATTCTGAGTTTTTGACCCAAATATATCAATCATTCTTCAATA
*
53138 TATCGATACATGCAAACAATTTTACACATTTTGTGACATTTTTATCTTTGCCATACTACATTCAA
324 TATCGATACATGCAAACAATTTTACACATTTTATGACATTTTTATCTTTGCCATACTACATTCAA
53203 TGC
389 TGC
53206 CAT
1 CAT
53209 ACTCAAATGA
Statistics
Matches: 387, Mismatches: 6, Indels: 3
0.98 0.02 0.01
Matches are distributed among these distances:
391 86 0.22
392 152 0.39
393 149 0.39
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (391 bp):
CATCTAGGTAAAAATATGCCAAAAGTTCTTTTTCACCGGCCACTATTGGTGCCCAACGATTGTCA
TCCCCCATTTTATTCGTTTACCTATATATATTCGATTTCACCACCTTTGGGCATGTCTCAGATTG
CTCCAAATTGGCCTTGATAAAATAAGGTGTCTACAATACTGGACCATTTCAAGGTAAAATTTTGC
ATTCTAGAAAAATTATATCGATACATAAGTGAATGCATCGATACTATGCTTACAATGTATTGATA
CATCACTCATTGTATCGATACATTCTGAGTTTTTGACCCAAATATATCAATCATTCTTCAATATA
TCGATACATGCAAACAATTTTACACATTTTATGACATTTTTATCTTTGCCATACTACATTCAATG
C
Found at i:59906 original size:27 final size:27
Alignment explanation
Indices: 59876--59946 Score: 108
Period size: 27 Copynumber: 2.7 Consensus size: 27
59866 TTTATTCATC
*
59876 GGGGATACTCCAATCCCATTCCTCCGA
1 GGGGATACTCCAATCCCACTCCTCCGA
* *
59903 GGGGATACTCCAATCCCACTCTTTCGA
1 GGGGATACTCCAATCCCACTCCTCCGA
59930 GGGGATACTCCAA-CCCA
1 GGGGATACTCCAATCCCA
59947 GCTTTTAAAC
Statistics
Matches: 41, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
26 4 0.10
27 37 0.90
ACGTcount: A:0.24, C:0.35, G:0.20, T:0.21
Consensus pattern (27 bp):
GGGGATACTCCAATCCCACTCCTCCGA
Found at i:66274 original size:33 final size:34
Alignment explanation
Indices: 66198--66287 Score: 128
Period size: 33 Copynumber: 2.6 Consensus size: 34
66188 TTTAGTGGCA
* *
66198 TTTCTTTTCAAAGTCCACAACTTCGTGGCAACCCT
1 TTTCTTTT-AAAGTCCACAACTCCATGGCAACCCT
*
66233 TTTCTTTTAAAGTCCACAACTCCATGGCAA-CTT
1 TTTCTTTTAAAGTCCACAACTCCATGGCAACCCT
*
66266 TTTCTTTTAAAGTCCATAACTC
1 TTTCTTTTAAAGTCCACAACTC
66288 TGTGGCATCG
Statistics
Matches: 51, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
33 23 0.45
34 20 0.39
35 8 0.16
ACGTcount: A:0.26, C:0.28, G:0.09, T:0.38
Consensus pattern (34 bp):
TTTCTTTTAAAGTCCACAACTCCATGGCAACCCT
Found at i:66344 original size:27 final size:27
Alignment explanation
Indices: 66269--66780 Score: 477
Period size: 27 Copynumber: 18.7 Consensus size: 27
66259 GCAACTTTTT
* * *
66269 CTTTTAAAGTCCATAACTCTGTGGCATC
1 CTTTT-AAGTCCACAACTCCGTGGCACC
* * * *
66297 GTTTTAAAGTCCAAAAATCCGTGGCATC
1 CTTTT-AAGTCCACAACTCCGTGGCACC
*
66325 CTTTTAAGTTCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
* *
66352 CTTTAAAGTCCACAACTCTGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
* ** *
66379 CTTTTAAACTCCACAACTCTATGGCATC
1 CTTTT-AAGTCCACAACTCCGTGGCACC
* *
66407 CTTTTAAGTCCATAACTCCATGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
* * *
66434 TTTTTAAGTCCAC-ACTCTAGTGGCATC
1 CTTTTAAGTCCACAACTC-CGTGGCACC
* *
66461 TTTTTAAAGTCCATAACTCCGTGGCACC
1 CTTTT-AAGTCCACAACTCCGTGGCACC
* *
66489 CTTTTAAGCCCACAACTCCGTGGCATC
1 CTTTTAAGTCCACAACTCCGTGGCACC
* **
66516 CTTTCAAAGTCCACAACTTTGTGGCACC
1 CTTT-TAAGTCCACAACTCCGTGGCACC
* * *
66544 CCTTTAAGTCCACAACTCTGTGGCAGC
1 CTTTTAAGTCCACAACTCCGTGGCACC
* * *
66571 CTTTAAAGTCCATAACTTCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
* *
66598 CTCTTAAGTCCACAACTTCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
* * *
66625 CTTTTAAGTCCATAACTCTGTAGCAGCC
1 CTTTTAAGTCCACAACTCCGTGGCA-CC
* *
66653 CTTTTAAAGTCCGCAGCTCCGTGGCACC
1 CTTTT-AAGTCCACAACTCCGTGGCACC
**
66681 CTTTTAAGTCCACAACTTTGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
* * * *
66708 TTTTTAGGTTCACAACTCCGTGGCATC
1 CTTTTAAGTCCACAACTCCGTGGCACC
* * *
66735 TTTTTAAAGTCCACAACTCTGTGGTACC
1 CTTTT-AAGTCCACAACTCCGTGGCACC
* * *
66763 TTTTTTAGTCTACAACTC
1 CTTTTAAGTCCACAACTC
66781 TATGATAACC
Statistics
Matches: 399, Mismatches: 77, Indels: 17
0.81 0.16 0.03
Matches are distributed among these distances:
26 4 0.01
27 249 0.62
28 127 0.32
29 19 0.05
ACGTcount: A:0.24, C:0.30, G:0.15, T:0.31
Consensus pattern (27 bp):
CTTTTAAGTCCACAACTCCGTGGCACC
Found at i:66395 original size:55 final size:55
Alignment explanation
Indices: 66269--66780 Score: 466
Period size: 55 Copynumber: 9.3 Consensus size: 55
66259 GCAACTTTTT
* * ** * * * *
66269 CTTTTAAAGTCCATAACTCTGTGGCATCGTTTTAAAGTCCAAAAATCCGTGGCATC
1 CTTTTAAAGTCCACAACTCCGTGGCA-CCCTTTAAAGTCCACAACTCTGTGGCACC
*
66325 CTTTT-AAGTTCACAACTCCGTGGCACCCTTTAAAGTCCACAACTCTGTGGCACC
1 CTTTTAAAGTCCACAACTCCGTGGCACCCTTTAAAGTCCACAACTCTGTGGCACC
* ** * * * **
66379 CTTTTAAACTCCACAACTCTATGGCATCCTTTTAAGTCCATAACTCCATGGCA-C
1 CTTTTAAAGTCCACAACTCCGTGGCACCCTTTAAAGTCCACAACTCTGTGGCACC
* * ** * *
66433 CTTTTTAAGTCCAC-ACTCTAGTGGCATCTTTTTAAAGTCCATAACTCCGTGGCACC
1 CTTTTAAAGTCCACAACTC-CGTGGCA-CCCTTTAAAGTCCACAACTCTGTGGCACC
* * *
66489 CTTTT-AAGCCCACAACTCCGTGGCATCCTTTCAAAGTCCACAACTTTGTGGCACC
1 CTTTTAAAGTCCACAACTCCGTGGCACCCTTT-AAAGTCCACAACTCTGTGGCACC
* * * *
66544 CCTTT-AAGTCCACAACTCTGTGGCAGCCTTTAAAGTCCATAACT-TCGTGGCACC
1 CTTTTAAAGTCCACAACTCCGTGGCACCCTTTAAAGTCCACAACTCT-GTGGCACC
* * * * *
66598 CTCTT-AAGTCCACAACTTCGTGGCACCCTTTTAAGTCCATAACTCTGTAGCAGCC
1 CTTTTAAAGTCCACAACTCCGTGGCACCCTTTAAAGTCCACAACTCTGTGGCA-CC
* * * *
66653 CTTTTAAAGTCCGCAGCTCCGTGGCACCCTTTTAAGTCCACAACTTTGTGGCA-C
1 CTTTTAAAGTCCACAACTCCGTGGCACCCTTTAAAGTCCACAACTCTGTGGCACC
* * * ** *
66707 CTTTTTAGGTTCACAACTCCGTGGCATCTTTTTAAAGTCCACAACTCTGTGGTA-C
1 CTTTTAAAGTCCACAACTCCGTGGCA-CCCTTTAAAGTCCACAACTCTGTGGCACC
** *
66762 CTTTTTTAGTCTACAACTC
1 CTTTTAAAGTCCACAACTC
66781 TATGATAACC
Statistics
Matches: 377, Mismatches: 68, Indels: 23
0.81 0.15 0.05
Matches are distributed among these distances:
53 5 0.01
54 134 0.36
55 182 0.48
56 56 0.15
ACGTcount: A:0.24, C:0.30, G:0.15, T:0.31
Consensus pattern (55 bp):
CTTTTAAAGTCCACAACTCCGTGGCACCCTTTAAAGTCCACAACTCTGTGGCACC
Found at i:66404 original size:82 final size:81
Alignment explanation
Indices: 66271--66815 Score: 522
Period size: 82 Copynumber: 6.7 Consensus size: 81
66261 AACTTTTTCT
* * * * * * *
66271 TTTAAAGTCCATAACTCTGTGGCATCGTTTTAAAGTCCAAAAATCCGTGGCATCCTTTTAAGTTC
1 TTTAAAGTCCACAACTCTGTGGCACCCTTTT-AAGTCCACAACTCTGTGGCATCCTTTTAAGTCC
66336 ACAACTCCGTGGCACCC
65 ACAACTCCGTGGCACCC
* *
66353 TTTAAAGTCCACAACTCTGTGGCACCCTTTTAAACTCCACAACTCTATGGCATCCTTTTAAGTCC
1 TTTAAAGTCCACAACTCTGTGGCACCCTTTT-AAGTCCACAACTCTGTGGCATCCTTTTAAGTCC
* * *
66418 ATAACTCCATGGCACCT
65 ACAACTCCGTGGCACCC
* * * * * * *
66435 TTTTAAGTCCAC-ACTCTAGTGGCATCTTTTTAAAGTCCATAACTCCGTGGCACCCTTTTAAGCC
1 TTTAAAGTCCACAACTCT-GTGGCACCCTTTT-AAGTCCACAACTCTGTGGCATCCTTTTAAGTC
*
66499 CACAACTCCGTGGCATCC
64 CACAACTCCGTGGCACCC
* * * *
66517 TTTCAAAGTCCACAACTTTGTGGCACCCCTTTAAGTCCACAACTCTGTGGCAGCCTTTAAAGTCC
1 TTT-AAAGTCCACAACTCTGTGGCACCCTTTTAAGTCCACAACTCTGTGGCATCCTTTTAAGTCC
* *
66582 ATAACTTCGTGGCACCC
65 ACAACTCCGTGGCACCC
* * *
66599 TCTT-AAGTCCACAACT-TCGTGGCACCCTTTTAAGTCCATAACTCTGTAGCAGCCCTTTTAAAG
1 T-TTAAAGTCCACAACTCT-GTGGCACCCTTTTAAGTCCACAACTCTGTGGCA-TCCTTTT-AAG
* *
66662 TCCGCAGCTCCGTGGCACCC
62 TCCACAACTCCGTGGCACCC
* * * * * * *
66682 TTTTAAGTCCACAACTTTGTGGCACCTTTTTAGGTTCACAACTCCGTGGCATCTTTTTAAAGTCC
1 TTTAAAGTCCACAACTCTGTGGCACCCTTTTAAGTCCACAACTCTGTGGCATCCTTTT-AAGTCC
* * *
66747 ACAACTCTGTGGTACCT
65 ACAACTCCGTGGCACCC
** * * ** * * *
66764 TTTTTAGTCTACAACTCTATGATAACCTTTTAAGTCCACTACT-TATGGCATC
1 TTTAAAGTCCACAACTCTGTGGCACCCTTTTAAGTCCACAACTCTGTGGCATC
66816 ATTTCAAAGC
Statistics
Matches: 381, Mismatches: 73, Indels: 19
0.81 0.15 0.04
Matches are distributed among these distances:
80 1 0.00
81 54 0.14
82 242 0.64
83 79 0.21
84 5 0.01
ACGTcount: A:0.24, C:0.30, G:0.14, T:0.32
Consensus pattern (81 bp):
TTTAAAGTCCACAACTCTGTGGCACCCTTTTAAGTCCACAACTCTGTGGCATCCTTTTAAGTCCA
CAACTCCGTGGCACCC
Found at i:66794 original size:27 final size:27
Alignment explanation
Indices: 66682--66810 Score: 82
Period size: 27 Copynumber: 4.8 Consensus size: 27
66672 CGTGGCACCC
* * **
66682 TTTTAAGTCCACAACTTTGTGGCACCT
1 TTTTAAGTCCACAACTCTATGATACCT
* * ** ** *
66709 TTTTAGGTTCACAACTCCGTGGCATCT
1 TTTTAAGTCCACAACTCTATGATACCT
* *
66736 TTTTAAAGTCCACAACTCTGTGGTACCT
1 TTTT-AAGTCCACAACTCTATGATACCT
* *
66764 TTTTTAGTCTACAACTCTATGATAACC-
1 TTTTAAGTCCACAACTCTATGAT-ACCT
*
66791 TTTTAAGTCCACTACT-TATG
1 TTTTAAGTCCACAACTCTATG
66811 GCATCATTTC
Statistics
Matches: 83, Mismatches: 17, Indels: 5
0.79 0.16 0.05
Matches are distributed among these distances:
26 4 0.05
27 54 0.65
28 25 0.30
ACGTcount: A:0.24, C:0.24, G:0.13, T:0.39
Consensus pattern (27 bp):
TTTTAAGTCCACAACTCTATGATACCT
Found at i:66841 original size:28 final size:28
Alignment explanation
Indices: 66809--67189 Score: 566
Period size: 28 Copynumber: 13.6 Consensus size: 28
66799 CCACTACTTA
*
66809 TGGCATCATTTCAAAGCCCACAAGTTAG
1 TGGCATCATTTCAAAGCCCACAAGTCAG
*
66837 TGGCATCATTTCAAAGCCCACAAGTTAG
1 TGGCATCATTTCAAAGCCCACAAGTCAG
*
66865 TGGCATCATTTCAAAGCCCACAAGTTAG
1 TGGCATCATTTCAAAGCCCACAAGTCAG
66893 TGGCATCATTTCAAAGCCCACAAGTCAG
1 TGGCATCATTTCAAAGCCCACAAGTCAG
* * * *
66921 TGGCACCCTTCCAAAGCCTACAAGTCAG
1 TGGCATCATTTCAAAGCCCACAAGTCAG
* *
66949 TGGTATCCTTTCAAAGCCCACAAGTCAG
1 TGGCATCATTTCAAAGCCCACAAGTCAG
*
66977 TGGCACTC-TTTCAAAGCCCACAAGTTAG
1 TGGCA-TCATTTCAAAGCCCACAAGTCAG
*
67005 TGGCATCATTTCAAAGCCCACAAGTCAA
1 TGGCATCATTTCAAAGCCCACAAGTCAG
* * *
67033 TGGCATCTTTTCAAAGCCCATAAGTTAG
1 TGGCATCATTTCAAAGCCCACAAGTCAG
**
67061 TGGCATTTTTTCAAAGCCCACAAGTCAG
1 TGGCATCATTTCAAAGCCCACAAGTCAG
67089 TGGCATCATTTCAAAGCCCACAAGTCAG
1 TGGCATCATTTCAAAGCCCACAAGTCAG
67117 TGGCATCATTTCAAAGCCCACAAGTCAG
1 TGGCATCATTTCAAAGCCCACAAGTCAG
*
67145 TGGCATCCTTTCAAAGCCCACAAGTCAG
1 TGGCATCATTTCAAAGCCCACAAGTCAG
* * *
67173 TAGCACCCTTTCAAAGC
1 TGGCATCATTTCAAAGC
67190 TATCGTAACG
Statistics
Matches: 326, Mismatches: 25, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
27 2 0.01
28 322 0.99
29 2 0.01
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.24
Consensus pattern (28 bp):
TGGCATCATTTCAAAGCCCACAAGTCAG
Found at i:70420 original size:52 final size:52
Alignment explanation
Indices: 70275--70400 Score: 225
Period size: 52 Copynumber: 2.4 Consensus size: 52
70265 AATATGAAAT
70275 TTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGCAAA
1 TTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGCAAA
* * *
70327 TTTTCCTGTATGTATCAATACATTTCATAGTGTATCGATACATCTGGGCAAA
1 TTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGCAAA
70379 TTTGCCTGCATGTATCGATACA
1 TTTGCCTGCATGTATCGATACA
70401 AAGATCAGTG
Statistics
Matches: 68, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
52 68 1.00
ACGTcount: A:0.27, C:0.19, G:0.17, T:0.37
Consensus pattern (52 bp):
TTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGCAAA
Found at i:70427 original size:13 final size:13
Alignment explanation
Indices: 70409--70433 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
70399 CAAAGATCAG
70409 TGTATCGATACAA
1 TGTATCGATACAA
70422 TGTATCGATACA
1 TGTATCGATACA
70434 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:70516 original size:19 final size:19
Alignment explanation
Indices: 70492--70537 Score: 83
Period size: 19 Copynumber: 2.4 Consensus size: 19
70482 ACATTATATT
70492 GATACAAAACTTATGTATC
1 GATACAAAACTTATGTATC
*
70511 GATACAACACTTATGTATC
1 GATACAAAACTTATGTATC
70530 GATACAAA
1 GATACAAA
70538 TCATTGAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.43, C:0.17, G:0.11, T:0.28
Consensus pattern (19 bp):
GATACAAAACTTATGTATC
Found at i:70800 original size:28 final size:28
Alignment explanation
Indices: 70769--71453 Score: 858
Period size: 28 Copynumber: 24.0 Consensus size: 28
70759 GGTGTCTACA
** *
70769 AAAGCCCACAAGTCAGAAGCATTCTTTC
1 AAAGCCCACAAGTCAGTGGCATCCTTTC
* *
70797 AAAGCCCACAAATCAGTGGCA-CATTTTC
1 AAAGCCCACAAGTCAGTGGCATC-CTTTC
*
70825 AAAGCCCACAAGTCAGTGGCATCATTTC
1 AAAGCCCACAAGTCAGTGGCATCCTTTC
*
70853 AAAGCCCACAAGTCAGTGGCATCATTTC
1 AAAGCCCACAAGTCAGTGGCATCCTTTC
* *
70881 AAAGCCCACAAGTCAATGGCATCTTTTC
1 AAAGCCCACAAGTCAGTGGCATCCTTTC
*
70909 AAAACCCACAAGTCAGTGGCATCCTTTC
1 AAAGCCCACAAGTCAGTGGCATCCTTTC
*
70937 AAAGCCCACAAGTCAGTGGCACCCTTTC
1 AAAGCCCACAAGTCAGTGGCATCCTTTC
* *
70965 AAAGCCCACAAGTTAATGGCATCCTTTC
1 AAAGCCCACAAGTCAGTGGCATCCTTTC
*
70993 AAAGCCCACAAGTTAGTGGCATCCTTTC
1 AAAGCCCACAAGTCAGTGGCATCCTTTC
71021 AAAGCCCACAAGTCAGTGGCATTCCCTTTC
1 AAAGCCCACAAGTCAGTGGCA-T-CCTTTC
* *
71051 AAAGCCCATAAGTCAGTGGTA-CCTTTTC
1 AAAGCCCACAAGTCAGTGGCATCC-TTTC
*
71079 AAAGCCCACAAGTCAGTGGCACCCTTTC
1 AAAGCCCACAAGTCAGTGGCATCCTTTC
** *
71107 AAAGTGCACAAGTCAGTGGTATCCTTTC
1 AAAGCCCACAAGTCAGTGGCATCCTTTC
* * *
71135 AAAGCCCACAAGTTAGTGGTACCCTTTC
1 AAAGCCCACAAGTCAGTGGCATCCTTTC
* * * *
71163 AAAGCTCATAAGTTAGTGGCATCCTTTT
1 AAAGCCCACAAGTCAGTGGCATCCTTTC
*
71191 AAAGCCCACAAGTCAGTGGCATCATTTC
1 AAAGCCCACAAGTCAGTGGCATCCTTTC
71219 AAAGCCCACAAGTCAGTGGCATCCTTTC
1 AAAGCCCACAAGTCAGTGGCATCCTTTC
71247 AAAGCCCACAAGTCAGTGGCATCCTTTC
1 AAAGCCCACAAGTCAGTGGCATCCTTTC
71275 AAAGCCCACAAGTCAGTGGCATCCCCTTTC
1 AAAGCCCACAAGTCAGTGGCAT--CCTTTC
*
71305 AAAGCCCACAAGTCAGTGGCACCCTTTC
1 AAAGCCCACAAGTCAGTGGCATCCTTTC
* *
71333 AAAGTCCACACAAGTCAGTGGAAACTCTTTTC
1 AAAG-CC-CACAAGTCAGTGG-CA-TCCTTTC
*
71365 AAAGCCTACAAGTCAGTGGCA-CCTTTTCC
1 AAAGCCCACAAGTCAGTGGCATCC-TTT-C
*
71394 AAAGCCCACACAAGTC-GATGGCAACTCTTTTC
1 AAAG-CC-CACAAGTCAG-TGGC-A-TCCTTTC
*
71426 AAAGCCCACATAAGTTAGTGGCA-CCTTT
1 AAAGCCCAC--AAGTCAGTGGCATCCTTT
71454 TTTTAAAGCC
Statistics
Matches: 581, Mismatches: 53, Indels: 45
0.86 0.08 0.07
Matches are distributed among these distances:
27 3 0.01
28 434 0.75
29 16 0.03
30 83 0.14
31 17 0.03
32 23 0.04
33 4 0.01
34 1 0.00
ACGTcount: A:0.30, C:0.29, G:0.17, T:0.23
Consensus pattern (28 bp):
AAAGCCCACAAGTCAGTGGCATCCTTTC
Found at i:81563 original size:30 final size:30
Alignment explanation
Indices: 81527--81589 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
81517 TCCTATCTCT
*
81527 TCTCCTATCATCCTTCCTATCTCTACTATC
1 TCTCCTATCATCCCTCCTATCTCTACTATC
* *
81557 TCTCCTATCATCCCTCCTATCTCTTCTTTC
1 TCTCCTATCATCCCTCCTATCTCTACTATC
81587 TCT
1 TCT
81590 TTGAGGGCTA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.13, C:0.41, G:0.00, T:0.46
Consensus pattern (30 bp):
TCTCCTATCATCCCTCCTATCTCTACTATC
Found at i:81574 original size:42 final size:42
Alignment explanation
Indices: 81483--81577 Score: 120
Period size: 42 Copynumber: 2.3 Consensus size: 42
81473 TTCTTCTCTC
* * * *
81483 CTCCTCCTGTCATCCATCCTCTCTCTATTATCTTTCCTATCT
1 CTCCTCCTATCATCCATCCTATCTCTACTATCTCTCCTATCT
* *
81525 CTTCTCCTATCATCCTTCCTATCTCTACTATCTCTCCTATCAT
1 CTCCTCCTATCATCCATCCTATCTCTACTATCTCTCCTATC-T
81568 C-CCTCCTATC
1 CTCCTCCTATC
81578 TCTTCTTTCT
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
42 43 0.96
43 2 0.04
ACGTcount: A:0.14, C:0.42, G:0.01, T:0.43
Consensus pattern (42 bp):
CTCCTCCTATCATCCATCCTATCTCTACTATCTCTCCTATCT
Found at i:84157 original size:20 final size:20
Alignment explanation
Indices: 84132--84170 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
84122 TGCTACACAG
*
84132 GCTCATCTTAGCTGAAACAA
1 GCTCATCTTAGCTAAAACAA
84152 GCTCATCTTAGCTAAAACA
1 GCTCATCTTAGCTAAAACA
84171 GTGCCAAACA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.36, C:0.26, G:0.13, T:0.26
Consensus pattern (20 bp):
GCTCATCTTAGCTAAAACAA
Found at i:84827 original size:20 final size:19
Alignment explanation
Indices: 84783--84836 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 19
84773 TTCTACAATT
*
84783 TGTATCGATACAACTAGTGAA
1 TGTATCGATAC-A-TAGTAAA
84804 TGTATCGATACATAGGTAAA
1 TGTATCGATACATA-GTAAA
*
84824 TGTATTGATACAT
1 TGTATCGATACAT
84837 GTCTCAAATG
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
19 2 0.07
20 17 0.57
21 11 0.37
ACGTcount: A:0.37, C:0.11, G:0.19, T:0.33
Consensus pattern (19 bp):
TGTATCGATACATAGTAAA
Found at i:87650 original size:20 final size:20
Alignment explanation
Indices: 87579--87655 Score: 82
Period size: 20 Copynumber: 3.5 Consensus size: 20
87569 CTACAATTTG
*
87579 TATCGATACAATAAGTTAATG
1 TATCGATAC-ATAAGTTAATA
*
87600 TATCAATACATAAGTTAATGTTA
1 TATCGATACATAAGTTAA---TA
87623 TGTATCGATACATAAGTTAATA
1 --TATCGATACATAAGTTAATA
87645 TATCGATACAT
1 TATCGATACAT
87656 GCTTGAAATT
Statistics
Matches: 48, Mismatches: 3, Indels: 11
0.77 0.05 0.18
Matches are distributed among these distances:
20 20 0.42
21 8 0.17
22 2 0.04
23 1 0.02
25 17 0.35
ACGTcount: A:0.42, C:0.10, G:0.12, T:0.36
Consensus pattern (20 bp):
TATCGATACATAAGTTAATA
Found at i:90302 original size:21 final size:21
Alignment explanation
Indices: 90269--90308 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
90259 AATTATTTCA
90269 AGATAATCGGTGACAATTAAG
1 AGATAATCGGTGACAATTAAG
*
90290 AGATACATC-GTGACTATTA
1 AGATA-ATCGGTGACAATTA
90309 CACCTTTCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 14 0.82
22 3 0.18
ACGTcount: A:0.40, C:0.12, G:0.20, T:0.28
Consensus pattern (21 bp):
AGATAATCGGTGACAATTAAG
Found at i:93829 original size:78 final size:79
Alignment explanation
Indices: 93659--93970 Score: 350
Period size: 79 Copynumber: 4.0 Consensus size: 79
93649 CCACTGATGT
* * * * * *
93659 TTTTA-TTTCTAAAATACCGATTTTCCACCATCGGGGATACTCTAATCCC-GTTATTTTCGAGGA
1 TTTTATTTTC-AAAACATCGATTTTCCACAATCGGAGATACTCTAA-CCCTGTTATTTCCGAAGA
93722 GATACTCCAACCTCGA
64 GATACTCCAACCTCGA
* * *
93738 TTTTATTTTCAAAATATCAATTTTCCACAATCGGAGATACTGC-AACCCTGTTA-TTCCAAAGAG
1 TTTTATTTTCAAAACATCGATTTTCCACAATCGGAGATACT-CTAACCCTGTTATTTCCGAAGAG
93801 ATACTCCAACCTCGA
65 ATACTCCAACCTCGA
** * * *
93816 TTTTATTTTCAAAACA-CTGATTTTTTACCATCGGAGATACTCTAACCCCGTTATTTCTGAAGAG
1 TTTTATTTTCAAAACATC-GATTTTCCACAATCGGAGATACTCTAACCCTGTTATTTCCGAAGAG
*
93880 ATACTCCAACC-CCA
65 ATACTCCAACCTCGA
* * * *
93894 GTTTTATTTTCAAAACATCGATTTTCCACAATC-GAGGATACTCCAACCCTGTTATTTCTGAGGG
1 -TTTTATTTTCAAAACATCGATTTTCCACAATCGGA-GATACTCTAACCCTGTTATTTCCGAAGA
93958 GATACTCCAACCT
64 GATACTCCAACCT
93971 TGTTATTTTC
Statistics
Matches: 200, Mismatches: 23, Indels: 19
0.83 0.10 0.08
Matches are distributed among these distances:
77 2 0.01
78 72 0.36
79 120 0.60
80 6 0.03
ACGTcount: A:0.29, C:0.25, G:0.12, T:0.34
Consensus pattern (79 bp):
TTTTATTTTCAAAACATCGATTTTCCACAATCGGAGATACTCTAACCCTGTTATTTCCGAAGAGA
TACTCCAACCTCGA
Found at i:93945 original size:157 final size:157
Alignment explanation
Indices: 93659--93949 Score: 419
Period size: 157 Copynumber: 1.9 Consensus size: 157
93649 CCACTGATGT
* * * *
93659 TTTTATTTCTAAAATACCGATTTTCCACCATCGGGGATACTCTAATCCCGTTATTTTCGAGGAGA
1 TTTTATTTCTAAAACACCGATTTTCCACCATCGGAGATACTCTAACCCCGTTATTTTCGAAGAGA
* * *
93724 TACTCCAACCTCGATTTTATTTTCAAAATATCAATTTTCCACAATCGGAGATACTGCAACCCTGT
66 TACTCCAACCCCGATTTTATTTTCAAAACATCAATTTTCCACAATCGGAGATACTCCAACCCTGT
93789 TATTCCAAAGAGATACTCCAACCTCGA
131 TATTCCAAAGAGATACTCCAACCTCGA
* **
93816 TTTTATTT-TCAAAACACTGATTTTTTACCATCGGAGATACTCTAACCCCGTTA-TTTCTGAAGA
1 TTTTATTTCT-AAAACACCGATTTTCCACCATCGGAGATACTCTAACCCCGTTATTTTC-GAAGA
*
93879 GATACTCCAACCCC-AGTTTTATTTTCAAAACATCGATTTTCCACAATC-GAGGATACTCCAACC
64 GATACTCCAACCCCGA-TTTTATTTTCAAAACATCAATTTTCCACAATCGGA-GATACTCCAACC
93942 CTGTTATT
127 CTGTTATT
93950 TCTGAGGGGA
Statistics
Matches: 119, Mismatches: 11, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
156 8 0.07
157 111 0.93
ACGTcount: A:0.30, C:0.25, G:0.11, T:0.34
Consensus pattern (157 bp):
TTTTATTTCTAAAACACCGATTTTCCACCATCGGAGATACTCTAACCCCGTTATTTTCGAAGAGA
TACTCCAACCCCGATTTTATTTTCAAAACATCAATTTTCCACAATCGGAGATACTCCAACCCTGT
TATTCCAAAGAGATACTCCAACCTCGA
Found at i:93965 original size:28 final size:28
Alignment explanation
Indices: 93929--93998 Score: 97
Period size: 28 Copynumber: 2.5 Consensus size: 28
93919 CCACAATCGA
93929 GGATACTCCAACCCTGTTA-TTTCTGAGG
1 GGATACTCCAACCCTGTTATTTTC-GAGG
*
93957 GGATACTCCAACCTTGTTATTTTCGAGG
1 GGATACTCCAACCCTGTTATTTTCGAGG
* *
93985 AGATACTCGAACCC
1 GGATACTCCAACCC
93999 CGATTTTATT
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
28 33 0.89
29 4 0.11
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.30
Consensus pattern (28 bp):
GGATACTCCAACCCTGTTATTTTCGAGG
Found at i:94026 original size:186 final size:186
Alignment explanation
Indices: 93798--94156 Score: 458
Period size: 186 Copynumber: 1.9 Consensus size: 186
93788 TTATTCCAAA
* * * * *
93798 GAGATACTCCAACCTCGATTTTATTTTCAAAACACTGATTTTTTACCATCGGAGATACTCTAACC
1 GAGATACTCCAACCCCGATTTTATTTCCAAAACACTGATTTTTCACAATCGGAGATACTCCAACC
* *
93863 CCGTTA-TTTCTGAAGAGATACTCCAACCCCAGTTTTATTTTCAAAACA-TCGATTTTCCA-CAA
66 CCATTATTTTC-GAAGAGATACTCCAACCCCAGTTTTATTTTCAAAACACT-AATTTTCCATC-A
* *
93925 TCGAGG-ATACTCCAACCCTGTTATTTCTGAGGGGATACTCCAACCTTGTTATTTTCGAG
128 TCG-GGAATACTCCAACCCCGTTATTTCTGAGAGGATACTCCAACCTTGTTATTTTCGAG
* * * *
93984 GAGATACTCGAACCCCGATTTTATTTCCAAAACA-TCGATTTTTCATAATCGGGGATACTCCAAT
1 GAGATACTCCAACCCCGATTTTATTTCCAAAACACT-GATTTTTCACAATCGGAGATACTCCAAC
* * * * *
94048 CCCATTATTTTCGAAGGGATACTCCAACCCCGGTTTTATTTTCAAAATACTAATTTTTCATCATT
65 CCCATTATTTTCGAAGAGATACTCCAACCCCAGTTTTATTTTCAAAACACTAATTTTCCATCATC
* *
94113 GGGAATACTCTAACCCCGTTATTTTTGAGAGGATACTCCAACCT
130 GGGAATACTCCAACCCCGTTATTTCTGAGAGGATACTCCAACCT
94157 CAGTTTTATT
Statistics
Matches: 148, Mismatches: 20, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
185 3 0.02
186 139 0.94
187 6 0.04
ACGTcount: A:0.28, C:0.24, G:0.13, T:0.34
Consensus pattern (186 bp):
GAGATACTCCAACCCCGATTTTATTTCCAAAACACTGATTTTTCACAATCGGAGATACTCCAACC
CCATTATTTTCGAAGAGATACTCCAACCCCAGTTTTATTTTCAAAACACTAATTTTCCATCATCG
GGAATACTCCAACCCCGTTATTTCTGAGAGGATACTCCAACCTTGTTATTTTCGAG
Found at i:94038 original size:79 final size:79
Alignment explanation
Indices: 93955--94410 Score: 463
Period size: 79 Copynumber: 5.8 Consensus size: 79
93945 TTATTTCTGA
** * *
93955 GGGGATACTCCAACCTTGTTATTTTCGAGGAGATACTCGAACCCCGATTTTATTTCCAAAACATC
1 GGGGATACTCCAACCCCGTTATTTTCGAGGAGATACTCCAACCCCGGTTTTATTTCCAAAACATC
*
94020 GATTTTTCATAATC
66 GATTTTTCACAATC
* * * *
94034 GGGGATACTCCAATCCCATTATTTTCGAAGG-GATACTCCAACCCCGGTTTTATTTTCAAAATA-
1 GGGGATACTCCAACCCCGTTATTTTCG-AGGAGATACTCCAACCCCGGTTTTATTTCCAAAACAT
* *
94097 CTAATTTTTCATC-ATT
65 C-GATTTTTCA-CAATC
* * * * * ** *
94113 GGGAATACTCTAACCCCGTTATTTTTGA-GAGGATACTCCAACCTCAGTTTTATTTTTAAAACAC
1 GGGGATACTCCAACCCCGTTATTTTCGAGGA-GATACTCCAACCCCGGTTTTATTTCCAAAACAT
94177 CGATTTTTCACAAT-
65 CGATTTTTCACAATC
** * * * *
94191 GGTGTTTAGTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCTCGGTTTTATTTTCAAAACAT
1 GG-GGATACTCCAACCCCGTTATTTTCGAGGAGATACTCCAACCCCGGTTTTATTTCCAAAACAT
* * *
94256 CAATTTTTTACAATT
65 CGATTTTTCACAATC
* * * * * *
94271 AGGGATACTTCAACCCCGTTATTTTTGAGGGGATACTCCAACCCTGGTTTTATTTCTAAAACATC
1 GGGGATACTCCAACCCCGTTATTTTCGAGGAGATACTCCAACCCCGGTTTTATTTCCAAAACATC
94336 GATTTTTCACAATC
66 GATTTTTCACAATC
* * * * * * *
94350 AGGGATACTCCAACCTCGTTATTTTCGAGAAAATACTCCAACCCTGTTTTTATCTCCAAAA
1 GGGGATACTCCAACCCCGTTATTTTCGAGGAGATACTCCAACCCCGGTTTTATTTCCAAAA
94411 TATTAAACCT
Statistics
Matches: 313, Mismatches: 54, Indels: 20
0.81 0.14 0.05
Matches are distributed among these distances:
77 1 0.00
78 5 0.02
79 301 0.96
80 6 0.02
ACGTcount: A:0.28, C:0.23, G:0.14, T:0.36
Consensus pattern (79 bp):
GGGGATACTCCAACCCCGTTATTTTCGAGGAGATACTCCAACCCCGGTTTTATTTCCAAAACATC
GATTTTTCACAATC
Found at i:94040 original size:107 final size:107
Alignment explanation
Indices: 93851--94079 Score: 295
Period size: 107 Copynumber: 2.1 Consensus size: 107
93841 TACCATCGGA
* *
93851 GATACTCTAACCCCGTTATTTCTGAAGAGATACTCCAACCCCAGTTTTATTTTCAAAACATCGAT
1 GATACTCCAACCCCGTTATTTCTGAAGAGATACTCCAACCCCAGTTTTATTTCCAAAACATCGAT
* *
93916 TTTCCACAATCGAGGATACTCCAA-CCCTGTTA-TTTCTGAGGG
66 TTTCCACAATCGAGGATACTCCAATCCC-ATTATTTTC-GAAGG
** * *
93958 GATACTCCAACCTTGTTATTT-TCGAGGAGATACTCGAACCCC-GATTTTATTTCCAAAACATCG
1 GATACTCCAACCCCGTTATTTCT-GAAGAGATACTCCAACCCCAG-TTTTATTTCCAAAACATCG
* * *
94021 ATTTTTCATAATCGGGGATACTCCAATCCCATTATTTTCGAAGG
64 ATTTTCCACAATCGAGGATACTCCAATCCCATTATTTTCGAAGG
94065 GATACTCCAACCCCG
1 GATACTCCAACCCCG
94080 GTTTTATTTT
Statistics
Matches: 105, Mismatches: 13, Indels: 8
0.83 0.10 0.06
Matches are distributed among these distances:
106 2 0.02
107 96 0.91
108 7 0.07
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.31
Consensus pattern (107 bp):
GATACTCCAACCCCGTTATTTCTGAAGAGATACTCCAACCCCAGTTTTATTTCCAAAACATCGAT
TTTCCACAATCGAGGATACTCCAATCCCATTATTTTCGAAGG
Found at i:94163 original size:265 final size:264
Alignment explanation
Indices: 93691--94237 Score: 708
Period size: 265 Copynumber: 2.1 Consensus size: 264
93681 TTCCACCATC
* * * *
93691 GGGGATACTCTAATCC-CGTTATTTTCGAGGAGATACTCCAACCTCGATTTTATTTTCAAAATAT
1 GGGGATACTCCAA-CCTCGTTATTTTCGAGGAGATACTCCAACCCCGATTTTATTTCCAAAACAT
* * *
93755 CAATTTTCCACAATCGGAGATACTGCAACCCTGTTATTCCAAAGAGATACTCCAACCTCGATTTT
65 CAATTTTCCACAATCGGAGATACTCCAACCCTATTATTCCAAAGAGATACTCCAACCCCGATTTT
* *
93820 ATTTTCAAAACACTGATTTTTTACCATCGGAGATACTCTAACCCCGTTATTTCTGAAGAGATACT
130 ATTTTCAAAACACTAATTTTTCACCATCGGAGATACTCTAACCCCGTTATTTCTGAAGAGATACT
* *
93885 CCAACCCCAGTTTTATTTTCAAAACATCGATTTTCCACAATCGAGGATACTCCAACCCTGTTA-T
195 CCAACCCCAGTTTTATTTTCAAAACACCGATTTTCCACAATCGAGGATACTCCAACCCCGTTATT
93949 TTCTGA
260 TTC-GA
* *
93955 GGGGATACTCCAACCTTGTTATTTTCGAGGAGATACTCGAACCCCGATTTTATTTCCAAAACATC
1 GGGGATACTCCAACCTCGTTATTTTCGAGGAGATACTCCAACCCCGATTTTATTTCCAAAACATC
* * * * * * * *
94020 GATTTTTCATAATCGGGGATACTCCAATCCC-ATTATTTTCGAAGGGATACTCCAACCCCGGTTT
66 AATTTTCCACAATCGGAGATACTCCAA-CCCTATTA-TTCCAAAGAGATACTCCAACCCCGATTT
* * * *
94084 TATTTTCAAAATACTAATTTTTCATCATTGG-GAATACTCTAACCCCGTTATTTTTG-AGAGGAT
129 TATTTTCAAAACACTAATTTTTCACCATCGGAG-ATACTCTAACCCCGTTATTTCTGAAGA-GAT
* * * * * ** *
94147 ACTCCAACCTCAGTTTTATTTTTAAAACACCGATTTTTCACAATGGTGTTTAGTCCAACCCCGTT
192 ACTCCAACCCCAGTTTTATTTTCAAAACACCGATTTTCCACAATCGAGGATACTCCAACCCCGTT
94212 ATTTTCGA
257 ATTTTCGA
94220 GGGGATACTCCAACCTCG
1 GGGGATACTCCAACCTCG
94238 GTTTTATTTT
Statistics
Matches: 243, Mismatches: 34, Indels: 11
0.84 0.12 0.04
Matches are distributed among these distances:
263 2 0.01
264 85 0.35
265 152 0.63
266 4 0.02
ACGTcount: A:0.28, C:0.24, G:0.14, T:0.34
Consensus pattern (264 bp):
GGGGATACTCCAACCTCGTTATTTTCGAGGAGATACTCCAACCCCGATTTTATTTCCAAAACATC
AATTTTCCACAATCGGAGATACTCCAACCCTATTATTCCAAAGAGATACTCCAACCCCGATTTTA
TTTTCAAAACACTAATTTTTCACCATCGGAGATACTCTAACCCCGTTATTTCTGAAGAGATACTC
CAACCCCAGTTTTATTTTCAAAACACCGATTTTCCACAATCGAGGATACTCCAACCCCGTTATTT
TCGA
Found at i:94388 original size:237 final size:237
Alignment explanation
Indices: 93963--94392 Score: 562
Period size: 237 Copynumber: 1.8 Consensus size: 237
93953 GAGGGGATAC
** * *
93963 TCCAACCTTGTTATTTTCGAGGAGATACTCGAACCCCGATTTTATTTCCAAAACATCGATTTTTC
1 TCCAACCCCGTTATTTTCGAGGAGATACTCCAACCCCGATTTTATTTCCAAAACATCAATTTTTC
* * * *
94028 ATAATCGGGGATACTCCAATCCCATTATTTTCGAAGGGATACTCCAACCCCGGTTTTATTTTCAA
66 ACAATCAGGGATACTCCAACCCCATTATTTTCGAAGGGATACTCCAACCCCGGTTTTATTTTAAA
* * * **
94093 AATACTAATTTTTCATCATTGGGAATACTCTAACCCCGTTATTTTTGAGAGGATACTCCAACCTC
131 AATACTAATTTTTCATCATAGGGAATACTCCAACCCCGTTATTTTCGAGAAAATACTCCAACCTC
94158 AGTTTTATTTTTAAAACACCGATTTTTCACAATGGTGTTTAG
196 AGTTTTATTTTTAAAACACCGATTTTTCACAATGGTGTTTAG
* * * * *
94200 TCCAACCCCGTTATTTTCGAGGGGATACTCCAACCTCGGTTTTATTTTCAAAACATCAATTTTTT
1 TCCAACCCCGTTATTTTCGAGGAGATACTCCAACCCCGATTTTATTTCCAAAACATCAATTTTTC
* * * * * *
94265 ACAATTAGGGATACTTCAACCCCGTTATTTTTGAGGGGATACTCCAACCCTGGTTTTATTTCTAA
66 ACAATCAGGGATACTCCAACCCCATTATTTTCGAAGGGATACTCCAACCCCGGTTTTATTT-TAA
* *
94330 AACAT-C-GATTTTTCA-CAATCAGGG-ATACTCCAACCTCGTTATTTTCGAGAAAATACTCCAA
130 AA-ATACTAATTTTTCATC-AT-AGGGAATACTCCAACCCCGTTATTTTCGAGAAAATACTCCAA
94391 CC
192 CC
94393 CTGTTTTTAT
Statistics
Matches: 163, Mismatches: 26, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
236 1 0.01
237 152 0.93
238 8 0.05
239 2 0.01
ACGTcount: A:0.28, C:0.23, G:0.13, T:0.36
Consensus pattern (237 bp):
TCCAACCCCGTTATTTTCGAGGAGATACTCCAACCCCGATTTTATTTCCAAAACATCAATTTTTC
ACAATCAGGGATACTCCAACCCCATTATTTTCGAAGGGATACTCCAACCCCGGTTTTATTTTAAA
AATACTAATTTTTCATCATAGGGAATACTCCAACCCCGTTATTTTCGAGAAAATACTCCAACCTC
AGTTTTATTTTTAAAACACCGATTTTTCACAATGGTGTTTAG
Found at i:96269 original size:23 final size:24
Alignment explanation
Indices: 96235--96279 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
96225 TGCCATAATA
96235 AAATCATCAAATGTTTAATAAAAT
1 AAATCATCAAATGTTTAATAAAAT
*
96259 AAATCAT-AAATGTTTCATAAA
1 AAATCATCAAATGTTTAATAAA
96280 CATCTAAACT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 13 0.65
24 7 0.35
ACGTcount: A:0.53, C:0.09, G:0.04, T:0.33
Consensus pattern (24 bp):
AAATCATCAAATGTTTAATAAAAT
Found at i:97759 original size:21 final size:21
Alignment explanation
Indices: 97733--97773 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
97723 GATCTTATAA
*
97733 TTGCAATAC-TTTACAATTCCT
1 TTGCAAAACATTTA-AATTCCT
97754 TTGCAAAACATTTAAATTCC
1 TTGCAAAACATTTAAATTCC
97774 ATGGGTTTCA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 14 0.78
22 4 0.22
ACGTcount: A:0.34, C:0.22, G:0.05, T:0.39
Consensus pattern (21 bp):
TTGCAAAACATTTAAATTCCT
Found at i:102934 original size:16 final size:15
Alignment explanation
Indices: 102899--102938 Score: 57
Period size: 13 Copynumber: 2.7 Consensus size: 15
102889 AATATCTTTA
102899 ATTTTAAAATAAATT
1 ATTTTAAAATAAATT
102914 A--TTAAAATAATATT
1 ATTTTAAAATAA-ATT
102928 ATTTTAAAATA
1 ATTTTAAAATA
102939 TTTATCAAGA
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
13 9 0.41
14 4 0.18
15 1 0.05
16 8 0.36
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (15 bp):
ATTTTAAAATAAATT
Found at i:102952 original size:28 final size:29
Alignment explanation
Indices: 102897--102960 Score: 85
Period size: 28 Copynumber: 2.2 Consensus size: 29
102887 AAAATATCTT
*
102897 TAATTTTAAAATAAATTATTAAAATAATA
1 TAATTTTAAAATAAATTATCAAAATAATA
* * *
102926 TTATTTTAAAAT-ATTTATCAAGATAATA
1 TAATTTTAAAATAAATTATCAAAATAATA
102954 TAATTTT
1 TAATTTT
102961 GTTCATGTAG
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
28 19 0.63
29 11 0.37
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.47
Consensus pattern (29 bp):
TAATTTTAAAATAAATTATCAAAATAATA
Found at i:103495 original size:168 final size:164
Alignment explanation
Indices: 103105--103642 Score: 578
Period size: 171 Copynumber: 3.2 Consensus size: 164
103095 TTGATAAATG
* * * * *
103105 TATTTTATTATTAAAATATTTAAAATTATCCTATAAATATTTAAAAAATATTAAAATTTAAAATT
1 TATTTTATTATTAAAATATCTAAAATTATCATGTAAATATTTAAAAAATTTTAAAATCTAAAATT
* * *
103170 ATAAAAAATAATTTTTTATGCTTAAAAAATTATCATATTTTAATACAAAAACAACAACATATATT
66 ATATAAAACAATTTTTTATGCTTAAAAAATTATCATATTTTAATAC--AAA-AGC-A-ATAT-TT
*
103235 TTTTTAGACTTATTATTTTCATATTTTTTAA-CCGATAAATA
125 TTTTTAGACTTATTATTTT-ATAATTTTTAACCCGAT-AATA
* * *
103276 TATTTTATCATTACAATATCTAAAATTATCTTGTAAATATTTAAAAAATTTTAAAATCTAAAATT
1 TATTTTATTATTAAAATATCTAAAATTATCATGTAAATATTTAAAAAATTTTAAAATCTAAAATT
* * *
103341 ATGTAAAACAATTTTTTTATGCTTAAAAAATTATTATATTTTAATACGAAAGCAATATTTTTCTT
66 ATATAAAACAA-TTTTTTATGCTTAAAAAATTATCATATTTTAATACAAAAGCAATATTTTT-TT
* *
103406 TGAGACTTATTATTTTATAATTTTGAAACCCGATAATG
129 T-AGACTTATTATTTTATAATTTT-TAACCCGATAATA
* * * *
103444 TATTTTATTATTAAAATATCTAAAATAATAATGTTAAATATTTACAAATTTTTAAAATCTAAAAT
1 TATTTTATTATTAAAATATCTAAAATTATCATG-TAAATATTTAAAAAATTTTAAAATCTAAAAT
* * * * * *
103509 TACATAAAACAAATTTTTT-GGCTTGAGAAACTATCATATTTTAATACCAAAGTTTCAAT-TTAC
65 TATATAAAAC-AATTTTTTATGCTTAAAAAATTATCATATTTTAATACAAAAG---CAATATT--
* * ** *
103572 ATTTTTTAGACTTAATATTTTTTAATTTTTAACCTAAAAAATA
124 -TTTTTTAGACTTATTATTTTATAATTTTTAACC-CGATAATA
103615 TATTTTATTATTAAAATATCTAAAATTA
1 TATTTTATTATTAAAATATCTAAAATTA
103643 CTAAGTGGTT
Statistics
Matches: 314, Mismatches: 39, Indels: 28
0.82 0.10 0.07
Matches are distributed among these distances:
166 4 0.01
167 14 0.04
168 75 0.24
169 50 0.16
170 10 0.03
171 121 0.39
172 37 0.12
173 3 0.01
ACGTcount: A:0.44, C:0.08, G:0.04, T:0.45
Consensus pattern (164 bp):
TATTTTATTATTAAAATATCTAAAATTATCATGTAAATATTTAAAAAATTTTAAAATCTAAAATT
ATATAAAACAATTTTTTATGCTTAAAAAATTATCATATTTTAATACAAAAGCAATATTTTTTTTA
GACTTATTATTTTATAATTTTTAACCCGATAATA
Found at i:104033 original size:174 final size:175
Alignment explanation
Indices: 103748--104174 Score: 462
Period size: 174 Copynumber: 2.5 Consensus size: 175
103738 TTTAAGTGTA
*
103748 AAAATTTTATTTTACATAATTTTAGATTTTGAAAATTTTTAAATATTTATC-GAATAATTTTAAA
1 AAAATTTTTTTTTACATAATTTTAGATTTTGAAAATTTTTAAATATTTATCAGAATAATTTTAAA
** ***
103812 TATTTTAATAATAAAATGTATTTATTGGATTAAAATTTACAAAATAATAA-TTCTCAAAGAAAAA
66 TATTTTAATAATAAAATACATTTACAAGATTAAAATTTACAAAATAATAAGTT-TCAAAGAAAAA
* *
103876 AAGTAAATTAATGCTTTCATATTAAAATACAACAACTTCTTATGCAT
130 AA-TAAATTAATACTTTCATATTAAAATACAACAACTTCTTAAGCAT
* * **
103923 -GAATTTTTTTTTACATAATTTTAAATTTTGAAAATTTTTAAATATTTA-CAGAATAATTTTAGT
1 AAAATTTTTTTTTACATAATTTTAGATTTTGAAAATTTTTAAATATTTATCAGAATAATTTTAAA
** *
103986 TATTTTAATAATAAAATACA-TTACCAAG-TTAAAAAATTT-TGAAATAATAAGTTTTAAAGAAA
66 TATTTTAATAATAAAATACATTTA-CAAGATT--AAAATTTACAAAATAATAAGTTTCAAAGAAA
* * * * * * *
104048 AATATATATTGATATTTTCGTATTAAAATACAATAATTTCTTAAGCAT
128 AAAATAAATTAATACTTTCATATTAAAATACAACAACTTCTTAAGCAT
* *
104096 AAAAAATTATTTTTT--ATAATTTTAGATTTT-AATATTTTTTAAAATATTTATCA-AATAATTT
1 --AAAATTTTTTTTTACATAATTTTAGATTTTGAA-AATTTTT-AAATATTTATCAGAATAATTT
**
104157 TAAATATTACAATAATAA
62 TAAATATTTTAATAATAA
104175 TTAAGAAATA
Statistics
Matches: 211, Mismatches: 30, Indels: 22
0.80 0.11 0.08
Matches are distributed among these distances:
173 44 0.21
174 115 0.55
175 40 0.19
176 12 0.06
ACGTcount: A:0.45, C:0.05, G:0.05, T:0.44
Consensus pattern (175 bp):
AAAATTTTTTTTTACATAATTTTAGATTTTGAAAATTTTTAAATATTTATCAGAATAATTTTAAA
TATTTTAATAATAAAATACATTTACAAGATTAAAATTTACAAAATAATAAGTTTCAAAGAAAAAA
ATAAATTAATACTTTCATATTAAAATACAACAACTTCTTAAGCAT
Found at i:104338 original size:13 final size:15
Alignment explanation
Indices: 104306--104343 Score: 53
Period size: 13 Copynumber: 2.6 Consensus size: 15
104296 TTGATAAATA
104306 ATTTTAAAATAATATT
1 ATTTT-AAATAATATT
104322 ATTTTAAA-AAT-TT
1 ATTTTAAATAATATT
104335 ATTTTAAAT
1 ATTTTAAAT
104344 TAAAGAGATT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
13 10 0.48
14 3 0.14
15 3 0.14
16 5 0.24
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (15 bp):
ATTTTAAATAATATT
Found at i:112281 original size:14 final size:15
Alignment explanation
Indices: 112262--112304 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
112252 TTAAAAAATT
112262 ATATTTAATAATTTA
1 ATATTTAATAATTTA
*
112277 A-ATTTTAATATTTTA
1 ATA-TTTAATAATTTA
112292 ATATTT-ATAATTT
1 ATATTTAATAATTT
112305 TTTGATATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
14 7 0.29
15 16 0.67
16 1 0.04
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (15 bp):
ATATTTAATAATTTA
Found at i:112307 original size:17 final size:16
Alignment explanation
Indices: 112265--112315 Score: 59
Period size: 17 Copynumber: 3.2 Consensus size: 16
112255 AAAAATTATA
*
112265 TTTAATAATTTAA-AT
1 TTTAATATTTTAATAT
112280 TTTAATATTTTAATAT
1 TTTAATATTTTAATAT
* *
112296 TTATAATTTTTTGATAT
1 TT-TAATATTTTAATAT
112313 TTT
1 TTT
112316 TTATTTTGAT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
15 12 0.39
16 5 0.16
17 14 0.45
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (16 bp):
TTTAATATTTTAATAT
Found at i:112315 original size:8 final size:8
Alignment explanation
Indices: 112265--112315 Score: 59
Period size: 8 Copynumber: 6.4 Consensus size: 8
112255 AAAAATTATA
*
112265 TTTAATAA
1 TTTAATAT
112273 TTTAA-AT
1 TTTAATAT
112280 TTTAATAT
1 TTTAATAT
112288 TTTAATAT
1 TTTAATAT
*
112296 TTATAATTT
1 TT-TAATAT
*
112305 TTTGATAT
1 TTTAATAT
112313 TTT
1 TTT
112316 TTATTTTGAT
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
7 6 0.16
8 24 0.65
9 7 0.19
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (8 bp):
TTTAATAT
Found at i:112573 original size:2 final size:2
Alignment explanation
Indices: 112566--112610 Score: 90
Period size: 2 Copynumber: 22.5 Consensus size: 2
112556 TTCCAGTAAC
112566 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
112608 TA T
1 TA T
112611 GAAAGTTTAA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:113481 original size:20 final size:20
Alignment explanation
Indices: 113458--113499 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
113448 ATAATTTTTT
*
113458 ATTTCA-TCACATAAAAATAA
1 ATTTCATTCAAAT-AAAATAA
*
113478 ATTTTATTCAAATAAAATAA
1 ATTTCATTCAAATAAAATAA
113498 AT
1 AT
113500 AAATTACTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 14 0.74
21 5 0.26
ACGTcount: A:0.55, C:0.10, G:0.00, T:0.36
Consensus pattern (20 bp):
ATTTCATTCAAATAAAATAA
Found at i:113497 original size:26 final size:26
Alignment explanation
Indices: 113468--113530 Score: 62
Period size: 26 Copynumber: 2.5 Consensus size: 26
113458 ATTTCATCAC
*
113468 ATAAAAATAAATT-TTATTCAAATAAA
1 ATAAAAATAAATTATT-TTCAAACAAA
113494 AT--AAATAAATTACTTTTCAAACAAA
1 ATAAAAATAAATTA-TTTTCAAACAAA
*
113519 A-AAAAATTAATT
1 ATAAAAATAAATT
113531 GACATAAATA
Statistics
Matches: 31, Mismatches: 2, Indels: 8
0.76 0.05 0.20
Matches are distributed among these distances:
24 9 0.29
25 10 0.32
26 12 0.39
ACGTcount: A:0.60, C:0.06, G:0.00, T:0.33
Consensus pattern (26 bp):
ATAAAAATAAATTATTTTCAAACAAA
Found at i:114555 original size:16 final size:16
Alignment explanation
Indices: 114536--114566 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
114526 ATATGCCTGC
114536 CATTGCCATTGCCATG
1 CATTGCCATTGCCATG
*
114552 CATTGCCATTTCCAT
1 CATTGCCATTGCCAT
114567 AGTTCATATG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.19, C:0.32, G:0.13, T:0.35
Consensus pattern (16 bp):
CATTGCCATTGCCATG
Found at i:115090 original size:23 final size:23
Alignment explanation
Indices: 115055--115101 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
115045 ATTAACAATC
* *
115055 TATTTATTAATATCGTATTTATA
1 TATTTATTAATATCATAATTATA
115078 TATTT-TTATATATCATAATTATA
1 TATTTATTA-ATATCATAATTATA
115101 T
1 T
115102 TTATATAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 3 0.14
23 18 0.86
ACGTcount: A:0.36, C:0.04, G:0.02, T:0.57
Consensus pattern (23 bp):
TATTTATTAATATCATAATTATA
Found at i:115399 original size:3 final size:3
Alignment explanation
Indices: 115391--115427 Score: 65
Period size: 3 Copynumber: 12.3 Consensus size: 3
115381 TTTCTCTTTC
*
115391 TCT TCT TCT TCT CCT TCT TCT TCT TCT TCT TCT TCT T
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT T
115428 TTCACTACGA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (3 bp):
TCT
Found at i:115782 original size:27 final size:27
Alignment explanation
Indices: 115752--115808 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 27
115742 AATAAATTTC
115752 AAAAAT-AAT-TAAAATATAATATTATAT
1 AAAAATAAATATAAAATATAA-A-TATAT
*
115779 AAAAATAAATATAAATTATAAATATAT
1 AAAAATAAATATAAAATATAAATATAT
115806 AAA
1 AAA
115809 TTTTTTTATA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
27 14 0.52
28 4 0.15
29 9 0.33
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (27 bp):
AAAAATAAATATAAAATATAAATATAT
Found at i:115954 original size:15 final size:15
Alignment explanation
Indices: 115877--115955 Score: 54
Period size: 15 Copynumber: 5.2 Consensus size: 15
115867 TTATTTATTA
*
115877 TATTTTGAA-ATAAT
1 TATTTTAAATATAAT
*
115891 ATATTATTATATATAAT
1 -TATT-TTAAATATAAT
* * *
115908 AATTTTAAAAATTAT
1 TATTTTAAATATAAT
* *
115923 T-TTTAAAATATTTAT
1 TATTTTAAATA-TAAT
115938 TATTTTAAATATAAT
1 TATTTTAAATATAAT
115953 TAT
1 TAT
115956 AATATATAAA
Statistics
Matches: 49, Mismatches: 11, Indels: 8
0.72 0.16 0.12
Matches are distributed among these distances:
14 7 0.14
15 23 0.47
16 14 0.29
17 5 0.10
ACGTcount: A:0.46, C:0.00, G:0.01, T:0.53
Consensus pattern (15 bp):
TATTTTAAATATAAT
Found at i:115955 original size:18 final size:18
Alignment explanation
Indices: 115918--115955 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
115908 AATTTTAAAA
*
115918 ATTATTTTTAAAATATTT
1 ATTATTTTTAAAATAATT
115936 ATTA-TTTTAAATATAATT
1 ATTATTTTTAAA-ATAATT
115954 AT
1 AT
115956 AATATATAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 7 0.39
18 11 0.61
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (18 bp):
ATTATTTTTAAAATAATT
Found at i:116501 original size:21 final size:19
Alignment explanation
Indices: 116476--116519 Score: 61
Period size: 21 Copynumber: 2.2 Consensus size: 19
116466 TAAAATGAAG
116476 TTTTTATTTTGAACATTTAAT
1 TTTTTATTTTGAA-A-TTAAT
*
116497 TTTTTATTTTTAAATTAAT
1 TTTTTATTTTGAAATTAAT
116516 TTTT
1 TTTT
116520 CAATTTTTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 9 0.41
20 1 0.05
21 12 0.55
ACGTcount: A:0.27, C:0.02, G:0.02, T:0.68
Consensus pattern (19 bp):
TTTTTATTTTGAAATTAAT
Found at i:117722 original size:28 final size:31
Alignment explanation
Indices: 117653--117722 Score: 85
Period size: 28 Copynumber: 2.4 Consensus size: 31
117643 AAATAATATT
117653 TATATCATATTATGTGTTAATTATATTTAAA
1 TATATCATATTATGTGTTAATTATATTTAAA
**
117684 TATATTTTATTAT-T-TTATATT-TA-TTAAA
1 TATATCATATTATGTGTTA-ATTATATTTAAA
117712 TATATCATATT
1 TATATCATATT
117723 TATATTATTT
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
28 14 0.41
29 5 0.15
30 4 0.12
31 11 0.32
ACGTcount: A:0.37, C:0.03, G:0.03, T:0.57
Consensus pattern (31 bp):
TATATCATATTATGTGTTAATTATATTTAAA
Found at i:118901 original size:24 final size:23
Alignment explanation
Indices: 118856--118901 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
118846 TTATTTTATG
*
118856 AAAAAAAACTTTATGCCTTGAAT
1 AAAAAAAACTTTATGACTTGAAT
118879 AAAAAAAA-TATTATGACTGTGAA
1 AAAAAAAACT-TTATGACT-TGAA
118902 ATGGTAAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
22 1 0.05
23 15 0.75
24 4 0.20
ACGTcount: A:0.52, C:0.09, G:0.11, T:0.28
Consensus pattern (23 bp):
AAAAAAAACTTTATGACTTGAAT
Found at i:119445 original size:49 final size:46
Alignment explanation
Indices: 119343--119446 Score: 104
Period size: 49 Copynumber: 2.2 Consensus size: 46
119333 ATCTTTATTG
* *
119343 ATTATTTTTTATTTTAATTTTATTATCATTATTATAATTAAATTTAT
1 ATTATATTTTATTTTAATTTTA-TATCATTATTATAATTAAATCTAT
*
119390 ATTTATATTTTATTATTAATTTTA-ATCGTATTATTATAATACTCAATCT-T
1 A-TTATATTTTATT-TTAATTTTATATC--ATTATTATAAT--TAAATCTAT
119440 ATTATAT
1 ATTATAT
119447 AACGGTTAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
47 4 0.08
48 11 0.23
49 26 0.54
50 2 0.04
51 5 0.10
ACGTcount: A:0.35, C:0.05, G:0.01, T:0.60
Consensus pattern (46 bp):
ATTATATTTTATTTTAATTTTATATCATTATTATAATTAAATCTAT
Found at i:122481 original size:2 final size:2
Alignment explanation
Indices: 122468--122506 Score: 69
Period size: 2 Copynumber: 19.0 Consensus size: 2
122458 TATCATGCAT
122468 TA TA TCA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA T-A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
122507 AAGAATAGAA
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
2 34 0.94
3 2 0.06
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:124685 original size:2 final size:2
Alignment explanation
Indices: 124678--124704 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
124668 ATGTTTGTAC
124678 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
124705 ACCTGTATGC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:124895 original size:22 final size:23
Alignment explanation
Indices: 124867--124931 Score: 80
Period size: 22 Copynumber: 2.8 Consensus size: 23
124857 TTATTTAATT
124867 TTTATATAAT-TTTAAAAATATA
1 TTTATATAATATTTAAAAATATA
*
124889 TTTATAT-ATATTTAAATATATA
1 TTTATATAATATTTAAAAATATA
*
124911 TTAAATATAATTATTTAAAAA
1 TT-TATATAA-TATTTAAAAA
124932 ATAAAAAATG
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
21 2 0.06
22 20 0.56
23 4 0.11
24 1 0.03
25 9 0.25
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (23 bp):
TTTATATAATATTTAAAAATATA
Found at i:124897 original size:10 final size:10
Alignment explanation
Indices: 124882--124919 Score: 58
Period size: 10 Copynumber: 3.7 Consensus size: 10
124872 ATAATTTTAA
124882 AAATATATTT
1 AAATATATTT
*
124892 ATATATATTT
1 AAATATATTT
124902 AAATATATATT
1 AAATATAT-TT
124913 AAATATA
1 AAATATA
124920 ATTATTTAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
10 16 0.64
11 9 0.36
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (10 bp):
AAATATATTT
Found at i:125188 original size:20 final size:21
Alignment explanation
Indices: 125165--125204 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
125155 TTCAAGACTA
*
125165 AATTTATATTT-AATTATATT
1 AATTAATATTTAAATTATATT
125185 AATTAATATTTAAATTATAT
1 AATTAATATTTAAATTATAT
125205 CACATCATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 10 0.56
21 8 0.44
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (21 bp):
AATTAATATTTAAATTATATT
Found at i:126588 original size:2 final size:2
Alignment explanation
Indices: 126581--126606 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
126571 AACAGTAACC
126581 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
126607 GACAATGTGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:127106 original size:3 final size:3
Alignment explanation
Indices: 127098--127131 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
127088 GGAAATTTGT
127098 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA T
1 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA T
127132 AGTAATGATA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.32, C:0.32, G:0.00, T:0.35
Consensus pattern (3 bp):
TCA
Found at i:127143 original size:6 final size:6
Alignment explanation
Indices: 127142--127181 Score: 71
Period size: 6 Copynumber: 6.7 Consensus size: 6
127132 AGTAATGATA
*
127142 ATAATT ATAATT ATAATT ATAATT ATAATT ATAATA ATAA
1 ATAATT ATAATT ATAATT ATAATT ATAATT ATAATT ATAA
127182 AAGTGGATGT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 33 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (6 bp):
ATAATT
Found at i:127526 original size:8 final size:8
Alignment explanation
Indices: 127513--127541 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
127503 ATGGCTACTA
127513 TATATATT
1 TATATATT
127521 TATATATT
1 TATATATT
127529 TATATATT
1 TATATATT
127537 TATAT
1 TATAT
127542 CATCGCATGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (8 bp):
TATATATT
Found at i:128767 original size:21 final size:21
Alignment explanation
Indices: 128738--128794 Score: 80
Period size: 21 Copynumber: 2.7 Consensus size: 21
128728 TTTTATTTTA
128738 TTATAATTATATTTAAAATATT
1 TTAT-ATTATATTTAAAATATT
*
128760 TTATATTATAATTT-AATTATT
1 TTATATTAT-ATTTAAAATATT
128781 TTATATTATATTTA
1 TTATATTATATTTA
128795 CATAATCATA
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
20 4 0.12
21 20 0.62
22 8 0.25
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (21 bp):
TTATATTATATTTAAAATATT
Found at i:128929 original size:32 final size:33
Alignment explanation
Indices: 128859--128988 Score: 93
Period size: 32 Copynumber: 4.1 Consensus size: 33
128849 AAATTAAAAC
*
128859 ATAATAAAAATATAATATATAAATTTTACATAATT
1 ATAATAAAAATATAATATAT--ATTTTAAATAATT
128894 ATAATAAAAATATAATGAT-T-TTTTAAATTAA-T
1 ATAATAAAAATATAAT-ATATATTTTAAA-TAATT
* *
128926 ATAATATAAAT-TAATATA-ATATTAAA-AA-T
1 ATAATAAAAATATAATATATATTTTAAATAATT
* *
128955 AT-AT-AAAATATAA-A-ATATTTATATATTATT
1 ATAATAAAAATATAATATATATTT-TAAATAATT
128985 ATAA
1 ATAA
128989 CAAATAAAAA
Statistics
Matches: 78, Mismatches: 7, Indels: 24
0.72 0.06 0.22
Matches are distributed among these distances:
26 1 0.01
27 8 0.10
28 8 0.10
29 6 0.08
30 5 0.06
31 11 0.14
32 17 0.22
33 3 0.04
35 17 0.22
36 2 0.03
ACGTcount: A:0.57, C:0.01, G:0.01, T:0.42
Consensus pattern (33 bp):
ATAATAAAAATATAATATATATTTTAAATAATT
Found at i:128937 original size:15 final size:15
Alignment explanation
Indices: 128917--128947 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
128907 AATGATTTTT
128917 TAAATTAATATAATA
1 TAAATTAATATAATA
128932 TAAATTAATATAATA
1 TAAATTAATATAATA
128947 T
1 T
128948 TAAAAATATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (15 bp):
TAAATTAATATAATA
Found at i:133291 original size:2 final size:2
Alignment explanation
Indices: 133284--133329 Score: 92
Period size: 2 Copynumber: 23.0 Consensus size: 2
133274 TCAACTACCA
133284 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
133326 AT AT
1 AT AT
133330 TCTTTATATT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 44 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:139938 original size:30 final size:30
Alignment explanation
Indices: 139886--139943 Score: 75
Period size: 30 Copynumber: 1.9 Consensus size: 30
139876 CACAAATCAC
*
139886 AAATTTTTAATTTTATTAAATTATATTACT
1 AAATTTTTAATTTTATTAAATTAAATTACT
139916 AAATTTTT-ATTATTAATT-AATTAAATTA
1 AAATTTTTAATT-TT-ATTAAATTAAATTA
139944 TTTATGTTAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
29 3 0.12
30 19 0.76
31 3 0.12
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (30 bp):
AAATTTTTAATTTTATTAAATTAAATTACT
Found at i:142074 original size:2 final size:2
Alignment explanation
Indices: 142067--142098 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
142057 TTTGTTTAAC
142067 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
142099 TAAAGGGTTA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:142437 original size:2 final size:2
Alignment explanation
Indices: 142426--142466 Score: 75
Period size: 2 Copynumber: 21.0 Consensus size: 2
142416 CCTTAATTAT
142426 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
142467 AGCTGTGTAT
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 37 0.97
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:144421 original size:16 final size:17
Alignment explanation
Indices: 144400--144437 Score: 60
Period size: 16 Copynumber: 2.3 Consensus size: 17
144390 TGAATCGAAA
*
144400 TATTTTATATTTAGAT-
1 TATTTTAAATTTAGATC
144416 TATTTTAAATTTAGATC
1 TATTTTAAATTTAGATC
144433 TATTT
1 TATTT
144438 AGGTTTGAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
16 15 0.75
17 5 0.25
ACGTcount: A:0.32, C:0.03, G:0.05, T:0.61
Consensus pattern (17 bp):
TATTTTAAATTTAGATC
Found at i:144452 original size:16 final size:16
Alignment explanation
Indices: 144433--144468 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
144423 AATTTAGATC
*
144433 TATTTAGGTTTGAATT
1 TATTTAAGTTTGAATT
*
144449 TATTTAAGTTTTAATT
1 TATTTAAGTTTGAATT
144465 TATT
1 TATT
144469 CGAGTTTATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.28, C:0.00, G:0.11, T:0.61
Consensus pattern (16 bp):
TATTTAAGTTTGAATT
Found at i:144780 original size:15 final size:15
Alignment explanation
Indices: 144690--144791 Score: 52
Period size: 15 Copynumber: 6.6 Consensus size: 15
144680 AAGTAAAATT
144690 TTATTATAATATGTTA
1 TTATTATAATAT-TTA
*
144706 TT-TTTTATATATTTA
1 TTATTATA-ATATTTA
* *
144721 TTTATTA-AAAACTATA
1 -TTATTATAATA-TTTA
*
144737 TT-TATATATATAATTAA
1 TTAT-TATA-AT-ATTTA
*
144754 TTTTTA-AATATTTA
1 TTATTATAATATTTA
144768 TTATTATAATA-TTA
1 TTATTATAATATTTA
144782 TATATTATAA
1 T-TATTATAA
144792 ATTAATCATA
Statistics
Matches: 66, Mismatches: 9, Indels: 23
0.67 0.09 0.23
Matches are distributed among these distances:
14 14 0.21
15 27 0.41
16 14 0.21
17 9 0.14
18 2 0.03
ACGTcount: A:0.41, C:0.01, G:0.01, T:0.57
Consensus pattern (15 bp):
TTATTATAATATTTA
Found at i:147021 original size:21 final size:21
Alignment explanation
Indices: 146997--147036 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
146987 TTAGAATCAT
146997 TCATCTTATCTGTTGAAATTA
1 TCATCTTATCTGTTGAAATTA
* * *
147018 TCATTTTTTTTGTTGAAAT
1 TCATCTTATCTGTTGAAAT
147037 ATTTTATATT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.25, C:0.10, G:0.10, T:0.55
Consensus pattern (21 bp):
TCATCTTATCTGTTGAAATTA
Found at i:147093 original size:17 final size:17
Alignment explanation
Indices: 147069--147115 Score: 53
Period size: 17 Copynumber: 2.8 Consensus size: 17
147059 ATTAGTGCAT
*
147069 ATAT-ATATTTATATTA
1 ATATCATATATATATTA
*
147085 CA-ATCATATATATTTTA
1 -ATATCATATATATATTA
147102 ATATCATATATATA
1 ATATCATATATATA
147116 CATAATTTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
16 3 0.12
17 22 0.88
ACGTcount: A:0.45, C:0.06, G:0.00, T:0.49
Consensus pattern (17 bp):
ATATCATATATATATTA
Found at i:147114 original size:21 final size:20
Alignment explanation
Indices: 147067--147115 Score: 57
Period size: 21 Copynumber: 2.5 Consensus size: 20
147057 TTATTAGTGC
*
147067 ATATATATATTTATATTACA
1 ATATATATATTTATAATACA
147087 ATCATATATATTT-TAATATC-
1 AT-ATATATATTTATAATA-CA
147107 ATATATATA
1 ATATATATA
147116 CATAATTTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
19 7 0.27
20 8 0.31
21 11 0.42
ACGTcount: A:0.45, C:0.06, G:0.00, T:0.49
Consensus pattern (20 bp):
ATATATATATTTATAATACA
Found at i:147861 original size:30 final size:30
Alignment explanation
Indices: 147825--147884 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
147815 GGGTTGAATT
*
147825 TTTTTATT-TAAATTTAAATTAATTTTAAAA
1 TTTTTATTATAAATTTAAA-TAATATTAAAA
* *
147855 TTTTTATTATTATTTTAAATAATATTAAAA
1 TTTTTATTATAAATTTAAATAATATTAAAA
147885 ATTATTTTAT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
30 18 0.69
31 8 0.31
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (30 bp):
TTTTTATTATAAATTTAAATAATATTAAAA
Found at i:147922 original size:24 final size:23
Alignment explanation
Indices: 147836--147930 Score: 72
Period size: 22 Copynumber: 4.3 Consensus size: 23
147826 TTTTATTTAA
*
147836 ATTTA-AATTAATTT-TA-AAAT
1 ATTTATAATTAATTTAAATAAAT
* * *
147856 TTTTATTATTATTTTAAAT-AAT
1 ATTTATAATTAATTTAAATAAAT
* * * *
147878 ATTAAAAATTATTTTATATAAAT
1 ATTTATAATTAATTTAAATAAAT
*
147901 ATTTATAATTAAATTTAAATAAAA
1 ATTTATAATT-AATTTAAATAAAT
147925 ATTTAT
1 ATTTAT
147931 TTTTAATAAT
Statistics
Matches: 56, Mismatches: 14, Indels: 6
0.74 0.18 0.08
Matches are distributed among these distances:
20 4 0.07
21 7 0.12
22 18 0.32
23 11 0.20
24 16 0.29
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (23 bp):
ATTTATAATTAATTTAAATAAAT
Found at i:149413 original size:13 final size:13
Alignment explanation
Indices: 149389--149435 Score: 51
Period size: 13 Copynumber: 3.6 Consensus size: 13
149379 TACAAATAAG
*
149389 ATATAATAAAAAA
1 ATATAATTAAAAA
*
149402 ATTTAATT-AAAA
1 ATATAATTAAAAA
*
149414 ATATAAATAAAAA
1 ATATAATTAAAAA
149427 ATGATAATT
1 AT-ATAATT
149436 TTTTAATTTT
Statistics
Matches: 27, Mismatches: 5, Indels: 3
0.77 0.14 0.09
Matches are distributed among these distances:
12 10 0.37
13 12 0.44
14 5 0.19
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (13 bp):
ATATAATTAAAAA
Found at i:150387 original size:18 final size:17
Alignment explanation
Indices: 150356--150400 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 17
150346 AAAATTTGTA
150356 TTCAT-TTTTTTGTGTG
1 TTCATGTTTTTTGTGTG
150372 TTCATGTTTCTTTGTGTG
1 TTCATGTTT-TTTGTGTG
*
150390 TACATGCTTTT
1 TTCATG-TTTT
150401 GTAAGTTTTA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
16 5 0.20
17 3 0.12
18 14 0.56
19 3 0.12
ACGTcount: A:0.09, C:0.11, G:0.18, T:0.62
Consensus pattern (17 bp):
TTCATGTTTTTTGTGTG
Found at i:150881 original size:18 final size:17
Alignment explanation
Indices: 150851--150886 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
150841 TTTTGACATC
150851 TTTTTGATTTATTATTT
1 TTTTTGATTTATTATTT
*
150868 TTTTTTATTATATTATTT
1 TTTTTGATT-TATTATTT
150886 T
1 T
150887 ATATTGTGTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.19, C:0.00, G:0.03, T:0.78
Consensus pattern (17 bp):
TTTTTGATTTATTATTT
Found at i:151047 original size:13 final size:13
Alignment explanation
Indices: 151031--151055 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
151021 ATATGTTATT
151031 TATATTATATATA
1 TATATTATATATA
151044 TATATTATATAT
1 TATATTATATAT
151056 CAGGTCTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (13 bp):
TATATTATATATA
Found at i:151312 original size:16 final size:15
Alignment explanation
Indices: 151289--151333 Score: 58
Period size: 16 Copynumber: 3.0 Consensus size: 15
151279 AAATCCTATT
151289 AAAATTATATTATAA
1 AAAATTATATTATAA
151304 AATAATTATA--ATAA
1 AA-AATTATATTATAA
151318 AAAATTATATTTATAA
1 AAAATTATA-TTATAA
151334 TCATTATTTC
Statistics
Matches: 26, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
13 7 0.27
14 6 0.23
15 2 0.08
16 11 0.42
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (15 bp):
AAAATTATATTATAA
Found at i:151323 original size:13 final size:14
Alignment explanation
Indices: 151289--151327 Score: 53
Period size: 13 Copynumber: 2.7 Consensus size: 14
151279 AAATCCTATT
151289 AAAATTATATTATAA
1 AAAATTATA-TATAA
151304 AATAATTATA-ATAA
1 AA-AATTATATATAA
151318 AAAATTATAT
1 AAAATTATAT
151328 TTATAATCAT
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
13 7 0.32
14 6 0.27
15 2 0.09
16 7 0.32
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (14 bp):
AAAATTATATATAA
Found at i:153699 original size:17 final size:18
Alignment explanation
Indices: 153677--153711 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
153667 AAATTGATAA
153677 AAAATAA-AAAAAATTAG
1 AAAATAAGAAAAAATTAG
153694 AAAATAATGAAAAAATTA
1 AAAATAA-GAAAAAATTA
153712 TTTTTTAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 7 0.44
19 9 0.56
ACGTcount: A:0.74, C:0.00, G:0.06, T:0.20
Consensus pattern (18 bp):
AAAATAAGAAAAAATTAG
Found at i:158391 original size:23 final size:23
Alignment explanation
Indices: 158343--158393 Score: 61
Period size: 23 Copynumber: 2.3 Consensus size: 23
158333 ATAAGGTCAT
*
158343 AATT-TAAAAATAAAAATATTAT
1 AATTATAAAAATAAAAATATTAA
*
158365 AATTATAAAAATTTAAAAT-TTAA
1 AATTATAAAAA-TAAAAATATTAA
158388 AATTAT
1 AATTAT
158394 TAAATATCAC
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
22 4 0.16
23 15 0.60
24 6 0.24
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (23 bp):
AATTATAAAAATAAAAATATTAA
Found at i:158396 original size:16 final size:17
Alignment explanation
Indices: 158352--158397 Score: 60
Period size: 16 Copynumber: 2.8 Consensus size: 17
158342 TAATTTAAAA
*
158352 ATAAAAATATTATAATT
1 ATAAAAATATTAAAATT
158369 ATAAAAAT-TTAAAATT
1 ATAAAAATATTAAAATT
*
158385 -TAAAATTATTAAA
1 ATAAAAATATTAAA
158398 TATCACTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
15 6 0.23
16 12 0.46
17 8 0.31
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (17 bp):
ATAAAAATATTAAAATT
Found at i:158608 original size:2 final size:2
Alignment explanation
Indices: 158533--158596 Score: 103
Period size: 2 Copynumber: 32.5 Consensus size: 2
158523 CAGTATGTTT
158533 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* *
158575 TG T- TT TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA T
158597 GTTTTATATA
Statistics
Matches: 59, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
1 1 0.02
2 58 0.98
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (2 bp):
TA
Found at i:159649 original size:2 final size:2
Alignment explanation
Indices: 159642--159671 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
159632 ATTCTCCTAA
159642 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
159672 TATGTTGAGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:160364 original size:33 final size:33
Alignment explanation
Indices: 160284--160365 Score: 85
Period size: 32 Copynumber: 2.5 Consensus size: 33
160274 TATATTTAAA
* *
160284 ATATTATATATTTGTATAATTTTTAACAAATCAAT
1 ATATT-TAT-TTTATATAAATTTTAACAAATCAAT
* * * *
160319 A-ATTTATGTTATATAAATTTTAACATATTATT
1 ATATTTATTTTATATAAATTTTAACAAATCAAT
160351 ATATTTATTTTATAT
1 ATATTTATTTTATAT
160366 TTATATTATT
Statistics
Matches: 39, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
32 20 0.51
33 15 0.38
34 3 0.08
35 1 0.03
ACGTcount: A:0.40, C:0.04, G:0.02, T:0.54
Consensus pattern (33 bp):
ATATTTATTTTATATAAATTTTAACAAATCAAT
Found at i:160365 original size:11 final size:11
Alignment explanation
Indices: 160347--160402 Score: 71
Period size: 11 Copynumber: 5.2 Consensus size: 11
160337 TTTAACATAT
160347 TATTATATTTA
1 TATTATATTTA
*
160358 TTTTATATTTA
1 TATTATATTTA
*
160369 TATTATTTTTA
1 TATTATATTTA
160380 TATTATATTT-
1 TATTATATTTA
160390 TAATTAT-TTTA
1 T-ATTATATTTA
160401 TA
1 TA
160403 CTGTGTAATT
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
10 5 0.13
11 34 0.87
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (11 bp):
TATTATATTTA
Found at i:160369 original size:17 final size:17
Alignment explanation
Indices: 160347--160389 Score: 63
Period size: 17 Copynumber: 2.6 Consensus size: 17
160337 TTTAACATAT
160347 TATTATATTTA-TTTTA
1 TATTATATTTATTTTTA
160363 TATT-TATATTATTTTTA
1 TATTATAT-TTATTTTTA
160380 TATTATATTT
1 TATTATATTT
160390 TAATTATTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
15 3 0.12
16 7 0.29
17 11 0.46
18 3 0.12
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (17 bp):
TATTATATTTATTTTTA
Found at i:160396 original size:16 final size:15
Alignment explanation
Indices: 160346--160402 Score: 57
Period size: 16 Copynumber: 3.9 Consensus size: 15
160336 TTTTAACATA
160346 TTATTATATT-TATT
1 TTATTATATTATATT
160360 TTA-TAT-TTATATT
1 TTATTATATTATATT
*
160373 ATTTTTATATTATATT
1 -TTATTATATTATATT
*
160389 TTAATTATTTTATA
1 TT-ATTATATTATA
160403 CTGTGTAATT
Statistics
Matches: 35, Mismatches: 3, Indels: 8
0.76 0.07 0.17
Matches are distributed among these distances:
12 2 0.06
13 7 0.20
14 5 0.14
15 5 0.14
16 16 0.46
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (15 bp):
TTATTATATTATATT
Found at i:162437 original size:23 final size:23
Alignment explanation
Indices: 162385--162455 Score: 65
Period size: 23 Copynumber: 3.0 Consensus size: 23
162375 TAAACTTTTT
* *
162385 AATTAATAATTTTTTATTAAATAA
1 AATTAATAAATTATT-TTAAATAA
162409 AA-TAATAAATTATTTTAAA-AA
1 AATTAATAAATTATTTTAAATAA
* *
162430 ATATTAATAAAATATGTTAATATAA
1 A-ATTAATAAATTATTTTAA-ATAA
162455 A
1 A
162456 TGAAATTATA
Statistics
Matches: 39, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
21 3 0.08
22 6 0.15
23 24 0.62
24 3 0.08
25 3 0.08
ACGTcount: A:0.56, C:0.00, G:0.01, T:0.42
Consensus pattern (23 bp):
AATTAATAAATTATTTTAAATAA
Found at i:163653 original size:4 final size:4
Alignment explanation
Indices: 163646--163694 Score: 50
Period size: 4 Copynumber: 12.8 Consensus size: 4
163636 TTTTCGGGCA
* *
163646 AAAG AAAG AAAGG AAA- AAAC AAAG AAAG AAAG AAAG -GAG AAA- AAAG
1 AAAG AAAG AAA-G AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG
163692 AAA
1 AAA
163695 AAAAATTATA
Statistics
Matches: 38, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
3 8 0.21
4 26 0.68
5 4 0.11
ACGTcount: A:0.76, C:0.02, G:0.22, T:0.00
Consensus pattern (4 bp):
AAAG
Found at i:164229 original size:22 final size:21
Alignment explanation
Indices: 164202--164244 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
164192 CGGATATACA
164202 TATTATGCTCATATTATTTTTT
1 TATTATGCTCA-ATTATTTTTT
* *
164224 TATTATGTTTAATTATTTTTT
1 TATTATGCTCAATTATTTTTT
164245 ATTTATGTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 10 0.53
22 9 0.47
ACGTcount: A:0.23, C:0.05, G:0.05, T:0.67
Consensus pattern (21 bp):
TATTATGCTCAATTATTTTTT
Found at i:164240 original size:21 final size:21
Alignment explanation
Indices: 164214--164253 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
164204 TTATGCTCAT
164214 ATTATTTTTT-TATTATGTTTA
1 ATTATTTTTTAT-TTATGTTTA
164235 ATTATTTTTTATTTATGTT
1 ATTATTTTTTATTTATGTT
164254 ATGTTCATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 17 0.94
22 1 0.06
ACGTcount: A:0.23, C:0.00, G:0.05, T:0.72
Consensus pattern (21 bp):
ATTATTTTTTATTTATGTTTA
Found at i:164894 original size:17 final size:17
Alignment explanation
Indices: 164872--164905 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
164862 CTAATATTAT
*
164872 ATTTATGTTATGTTTTA
1 ATTTATGTTATATTTTA
*
164889 ATTTATTTTATATTTTA
1 ATTTATGTTATATTTTA
164906 TATAAATTTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.26, C:0.00, G:0.06, T:0.68
Consensus pattern (17 bp):
ATTTATGTTATATTTTA
Found at i:164947 original size:15 final size:14
Alignment explanation
Indices: 164929--164997 Score: 68
Period size: 14 Copynumber: 4.8 Consensus size: 14
164919 TATGATTAAA
164929 TTTTAACTTAAATTT
1 TTTTAA-TTAAATTT
*
164944 TTTT-ATTAAATAT
1 TTTTAATTAAATTT
* *
164957 TTTGAAATAAATTT
1 TTTTAATTAAATTT
*
164971 TATTAATTATAATTT
1 TTTTAATTA-AATTT
164986 TATTTAATTAAA
1 T-TTTAATTAAA
164998 AATTTTATAA
Statistics
Matches: 43, Mismatches: 8, Indels: 6
0.75 0.14 0.11
Matches are distributed among these distances:
13 10 0.23
14 14 0.33
15 12 0.28
16 7 0.16
ACGTcount: A:0.41, C:0.01, G:0.01, T:0.57
Consensus pattern (14 bp):
TTTTAATTAAATTT
Done.