Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold317
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 576627
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.33
File 6 of 7
Found at i:499652 original size:227 final size:228
Alignment explanation
Indices: 499320--499746 Score: 612
Period size: 227 Copynumber: 1.9 Consensus size: 228
499310 CCAATATAGC
* * **
499320 TGGCCTTGAATCAGCACATTGGCACCTTTCCCATCTTTAAGTTCAATGTAGCTGGCTTTGAATCA
1 TGGCCTTGAATCAGCACATTGGCACCTTTCCCATCTTCAAGTTCAATGTAGCTGACCGTGAATCA
499385 GCACATTGACATCCTTTTTCTCATCTTTAAGCCTAATATCGTTGGCCGTGAATCAACATATTGG-
66 GCACATTGACATCCTTTTTCTCATCTTTAAGCCTAATATCGTTGGCCGTGAATCAACATATTGGT
** * * *
499449 CATCTTTATCACTTTTC-TCATCTTCATCTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATAT
131 CAT-TTTATCACTCGTCATCATCATCATCTTTAAGTCCAATATTGCAGGCCTTGAATCAGCATAG
499513 TGGCACCTTCATCATCTTTAAAACCCAATGTTGT
195 TGGCACCTTCATCATCTTTAAAACCCAATGTTGT
** * *
499547 TGGCCTTGAATCAGCACATTGGCATTTTTCTCATCTTCAAG-TCTAATGTCGCTGACCGTGAATC
1 TGGCCTTGAATCAGCACATTGGCACCTTTCCCATCTTCAAGTTC-AATGTAGCTGACCGTGAATC
*
499611 AGCACATTGACATCCTTTTTCTCATCTTTGAA--CTCAATATCGTTGGCCGTGAATCAACGTATT
65 AGCACATTGACATCCTTTTTCTCATCTTT-AAGCCT-AATATCGTTGGCCGTGAATCAACATATT
* * * * *
499674 GGTCCTTTTATCACTCGTCATCCTCATCATCTTTAAGTCCAGTGTTGCAGGCCTTGAATCTGCAT
128 GGTCATTTTATCACTCGTCATCATCATCATCTTTAAGTCCAATATTGCAGGCCTTGAATCAGCAT
499739 AGTGGCAC
193 AGTGGCAC
499747 ATTATAATGA
Statistics
Matches: 176, Mismatches: 19, Indels: 9
0.86 0.09 0.04
Matches are distributed among these distances:
226 4 0.02
227 122 0.69
228 50 0.28
ACGTcount: A:0.23, C:0.25, G:0.16, T:0.36
Consensus pattern (228 bp):
TGGCCTTGAATCAGCACATTGGCACCTTTCCCATCTTCAAGTTCAATGTAGCTGACCGTGAATCA
GCACATTGACATCCTTTTTCTCATCTTTAAGCCTAATATCGTTGGCCGTGAATCAACATATTGGT
CATTTTATCACTCGTCATCATCATCATCTTTAAGTCCAATATTGCAGGCCTTGAATCAGCATAGT
GGCACCTTCATCATCTTTAAAACCCAATGTTGT
Found at i:500152 original size:31 final size:31
Alignment explanation
Indices: 500112--500329 Score: 152
Period size: 31 Copynumber: 6.6 Consensus size: 31
500102 AATTTTAAGT
* *
500112 CCACGACTCCGTCGCACCTTCTTTTCAAAGC
1 CCACAACTCCGTGGCACCTTCTTTTCAAAGC
*
500143 CCACAACTCCGTGGCACTCTTTTTCCCTTTT-AAAGT
1 CCACAACTCCGTGGCAC-C---TT--CTTTTCAAAGC
* * ** *
500179 CCACAACCCCGTGGCACCTTGTTCCTTTTAAGT
1 CCACAACTCCGTGGCACCTTCTT--TTCAAAGC
* * *
500212 CCACGACTCCGTGGCACATTGC-TTTCAAAGT
1 CCACAACTCCGTGGCACCTT-CTTTTCAAAGC
* * *
500243 CCGCGACTCTGTGGCACCTTCTTTTCAAAGC
1 CCACAACTCCGTGGCACCTTCTTTTCAAAGC
* *
500274 CCACAACTCCGTGGCTCTCTTTTTCTCTTTTAAAGC
1 CCACAACTCCGTGGCAC-C---TTCT-TTTCAAAGC
500310 CCACAACTCCGTGGCACCTT
1 CCACAACTCCGTGGCACCTT
500330 GTTCTTTTTA
Statistics
Matches: 149, Mismatches: 22, Indels: 31
0.74 0.11 0.15
Matches are distributed among these distances:
30 3 0.02
31 59 0.40
32 8 0.05
33 22 0.15
35 8 0.05
36 44 0.30
37 5 0.03
ACGTcount: A:0.19, C:0.36, G:0.15, T:0.30
Consensus pattern (31 bp):
CCACAACTCCGTGGCACCTTCTTTTCAAAGC
Found at i:500183 original size:36 final size:34
Alignment explanation
Indices: 500132--500383 Score: 189
Period size: 36 Copynumber: 7.4 Consensus size: 34
500122 GTCGCACCTT
500132 CTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCC
1 CTTTT-AAAGCCCACAACTCCGTGGCAC-CTTTTT-C
* * *
500169 CTTTTAAAGTCCACAACCCCGTGGCACCTTGTTC
1 CTTTTAAAGCCCACAACTCCGTGGCACCTTTTTC
* * * *
500203 CTTTT-AAGTCCACGACTCCGTGGCA-C--ATTG
1 CTTTTAAAGCCCACAACTCCGTGGCACCTTTTTC
* * * * *
500233 CTTTCAAAGTCCGCGACTCTGTGGCACC---TT-
1 CTTTTAAAGCCCACAACTCCGTGGCACCTTTTTC
*
500263 CTTTTCAAAGCCCACAACTCCGTGGCTCTCTTTTTC
1 CTTTT-AAAGCCCACAACTCCGTGGCAC-CTTTTTC
*
500299 TCTTTTAAAGCCCACAACTCCGTGGCACCTTGTT-
1 -CTTTTAAAGCCCACAACTCCGTGGCACCTTTTTC
* * * * **
500333 CTTTTTAAGTCCACAACTTCGTGGCATCTTTCACC
1 CTTTTAAAGCCCACAACTCCGTGGCACCTTT-TTC
500368 CTTTCTAAAGCCCACA
1 CTTT-TAAAGCCCACA
500384 CAAGTCGGTG
Statistics
Matches: 176, Mismatches: 27, Indels: 25
0.77 0.12 0.11
Matches are distributed among these distances:
30 10 0.06
31 37 0.21
32 3 0.02
33 44 0.25
34 6 0.03
35 16 0.09
36 50 0.28
37 10 0.06
ACGTcount: A:0.20, C:0.34, G:0.14, T:0.32
Consensus pattern (34 bp):
CTTTTAAAGCCCACAACTCCGTGGCACCTTTTTC
Found at i:500342 original size:131 final size:131
Alignment explanation
Indices: 500108--500358 Score: 412
Period size: 131 Copynumber: 1.9 Consensus size: 131
500098 GACGAATTTT
500108 AAGTCCACGACTCCGTCGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTT
1 AAGTCCACGACTCCGTCGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTT
* *
500173 TAAAGTCCACAACCCCGTGGCACCTTGTTCCTTTTAAGTCCACGACTCCGTGGCACATTGCTTTC
66 TAAAGCCCACAACCCCGTGGCACCTTGTTCCTTTTAAGTCCACAACTCCGTGGCACATTGCTTTC
500238 A
131 A
* * * * *
500239 AAGTCCGCGACTCTGTGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCTCTCTTTTTCTCTTT
1 AAGTCCACGACTCCGTCGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTT
* * *
500304 TAAAGCCCACAACTCCGTGGCACCTTGTTCTTTTTAAGTCCACAACTTCGTGGCA
66 TAAAGCCCACAACCCCGTGGCACCTTGTTCCTTTTAAGTCCACAACTCCGTGGCA
500359 TCTTTCACCC
Statistics
Matches: 110, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
131 110 1.00
ACGTcount: A:0.20, C:0.34, G:0.15, T:0.31
Consensus pattern (131 bp):
AAGTCCACGACTCCGTCGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTT
TAAAGCCCACAACCCCGTGGCACCTTGTTCCTTTTAAGTCCACAACTCCGTGGCACATTGCTTTC
A
Found at i:500413 original size:33 final size:33
Alignment explanation
Indices: 500367--500536 Score: 245
Period size: 33 Copynumber: 5.2 Consensus size: 33
500357 CATCTTTCAC
500367 CCTT-TCTAAAGCCCACACAAGTCGGTGGCAAA
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
500399 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
* * *
500432 CCTTCCCTAAAGCCCACACAAGTTGGTGGCAAC
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
** *
500465 CCCACTCTAAAGCCCACACAAGTTGGTGGC-AA
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
* *
500497 CCATTCTCTAAAGCCCACGCAAGTCGGTGGCAAC
1 CC-TTCTCTAAAGCCCACACAAGTCGGTGGCAAA
500531 CCTTCT
1 CCTTCT
500537 AAGCCCAATA
Statistics
Matches: 123, Mismatches: 12, Indels: 5
0.88 0.09 0.04
Matches are distributed among these distances:
32 7 0.06
33 113 0.92
34 3 0.02
ACGTcount: A:0.28, C:0.35, G:0.18, T:0.19
Consensus pattern (33 bp):
CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
Found at i:500600 original size:49 final size:47
Alignment explanation
Indices: 500536--501035 Score: 484
Period size: 43 Copynumber: 10.8 Consensus size: 47
500526 GCAACCCTTC
* *
500536 TAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCA-C-TCTTCTT
*
500585 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAC-CTTC--
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACTCTTCTT
* * *
500629 -AAGTCTAATATCGCTGGCCTTGAATCAGCACATT-G-ACAC--CTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACTCTTCTT
*
500671 TAAGTCCAATATAACTGGCCTTGAATCAGCACATTGGCAC-CTTC--
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACTCTTCTT
* *
500715 -AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCA-C-TCTTCTT
*
500763 TAAGTCCAATTGTAGCTGGCCTTGAATCAGCACATTGGCAC-CTTC--
1 TAAGTCCAA-TATAGCTGGCCTTGAATCAGCACATTGGCACTCTTCTT
* * *
500808 -AAGTCTAATATCGCTGGCCTTGAATCAGCATATTGGCAC-CTTCAACTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACTCTT---CTT
* * * *
500856 TAAGTCCAATGTTGGTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCA-C-TCTTCTT
* *
500905 TAAGTCCAATGTAGCTGGCCTTGAATTAGCACATTGGCA--C--CTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACTCTTCTT
* * * *
500948 TAAGTCCAATATAGCTGGCCTTTAATCTGCACATTAGCACCTTTCCCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCA-C--T--CTTCTT
* * *
501000 TAAGTTCAATGTAGCTGGCTTTGAATCAGCACATTG
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTG
501036 ACATCATTTT
Statistics
Matches: 380, Mismatches: 38, Indels: 63
0.79 0.08 0.13
Matches are distributed among these distances:
40 1 0.00
41 2 0.01
42 2 0.01
43 165 0.43
44 10 0.03
45 3 0.01
46 10 0.03
47 4 0.01
48 1 0.00
49 117 0.31
50 29 0.08
52 36 0.09
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.31
Consensus pattern (47 bp):
TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACTCTTCTT
Found at i:500700 original size:86 final size:89
Alignment explanation
Indices: 500531--500990 Score: 527
Period size: 92 Copynumber: 5.0 Consensus size: 89
500521 CGGTGGCAAC
* * * *
500531 CCTTCTAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATG
1 CCTTC-AAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACC-AC--CTTTAAGTCCAATG
500596 TAGCTGGCCTTGAATCAGCACATTGGCA
62 TAGCTGGCCTTGAATCAGCACATTGGCA
* * *
500624 CCTTCAAGTCTAATATCGCTGGCCTTGAATCAGCACATT-G-A-CACCTTTAAGTCCAATATAAC
1 CCTTCAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCACCTTTAAGTCCAATGTAGC
500686 TGGCCTTGAATCAGCACATTGGCA
66 TGGCCTTGAATCAGCACATTGGCA
* *
500710 CCTTCAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATTG
1 CCTTCAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACC-AC--CTTTAAGTCCAA-TG
500775 TAGCTGGCCTTGAATCAGCACATTGGCA
62 TAGCTGGCCTTGAATCAGCACATTGGCA
* * *
500803 CCTTCAAGTCTAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCAACTTTAAGTCCAATGT
1 CCTTCAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCA-C--CACCTTTAAGTCCAATGT
* * *
500868 TGGTGGCCTTGAATCAGCATATTGGCA
63 AGCTGGCCTTGAATCAGCACATTGGCA
* * *
500895 CCTTCTTCTTTAAGTCCAATGTAGCTGGCCTTGAATTAGCACATTGG---CACCTTTAAGTCCAA
1 -C--CTTC---AAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCACCTTTAAGTCCAA
* * * *
500957 TATAGCTGGCCTTTAATCTGCACATTAGCA
60 TGTAGCTGGCCTTGAATCAGCACATTGGCA
500987 CCTT
1 CCTT
500991 TCCCATCTTT
Statistics
Matches: 320, Mismatches: 31, Indels: 36
0.83 0.08 0.09
Matches are distributed among these distances:
86 77 0.24
87 1 0.00
88 2 0.01
89 5 0.02
90 2 0.01
91 2 0.01
92 106 0.33
93 88 0.28
94 1 0.00
95 4 0.01
96 1 0.00
98 31 0.10
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.31
Consensus pattern (89 bp):
CCTTCAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCACCTTTAAGTCCAATGTAGC
TGGCCTTGAATCAGCACATTGGCA
Found at i:501024 original size:95 final size:92
Alignment explanation
Indices: 500853--501035 Score: 240
Period size: 95 Copynumber: 2.0 Consensus size: 92
500843 GCACCTTCAA
* * * * * *
500853 CTTTAAGTCCAATGTTGGTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTAGCACCTTCATCTTTAAGTCCAATGTA
*
500918 GCTGGCCTTGAATTAGCACATTGGCAC
66 GCTGGCCTTGAATCAGCACATTGGCAC
* * *
500945 CTTTAAGTCCAATATAGCTGGCCTTTAATCTGCACATTAGCACCTTTCCCATCTTTAAGTTCAAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTAGCACC-TT--CATCTTTAAGTCCAAT
*
501010 GTAGCTGGCTTTGAATCAGCACATTG
63 GTAGCTGGCCTTGAATCAGCACATTG
501036 ACATCATTTT
Statistics
Matches: 77, Mismatches: 11, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
92 37 0.48
93 2 0.03
95 38 0.49
ACGTcount: A:0.24, C:0.23, G:0.18, T:0.34
Consensus pattern (92 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTAGCACCTTCATCTTTAAGTCCAATGTA
GCTGGCCTTGAATCAGCACATTGGCAC
Found at i:501156 original size:67 final size:68
Alignment explanation
Indices: 501048--501174 Score: 159
Period size: 67 Copynumber: 1.9 Consensus size: 68
501038 ATCATTTTTC
* * *
501048 TCATCTTTAAGCCTAATATCATTGGCCGTGAATCAACATATTAGCATCTTTATCA-CTTTTCTCA
1 TCATCTTTAAGCCTAATATCACTGGCCGTGAATCAACATATTAGCACCTTCATCATCTTTTCTCA
501112 TCT
66 TCT
** * * *
501115 TCATCTTTAAGTCC-AATATTGCTGGCCTTGAATCAGCATATTGGCACCTTCATCATCTTT
1 TCATCTTTAAG-CCTAATATCACTGGCCGTGAATCAACATATTAGCACCTTCATCATCTTT
501175 AAAACCCAAT
Statistics
Matches: 50, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
67 44 0.88
68 6 0.12
ACGTcount: A:0.25, C:0.24, G:0.11, T:0.39
Consensus pattern (68 bp):
TCATCTTTAAGCCTAATATCACTGGCCGTGAATCAACATATTAGCACCTTCATCATCTTTTCTCA
TCT
Found at i:501224 original size:53 final size:52
Alignment explanation
Indices: 501115--501311 Score: 153
Period size: 53 Copynumber: 3.7 Consensus size: 52
501105 TTTCTCATCT
** * * * **
501115 TCATCTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATATTGGCA-CCTTC
1 TCATCTTTAAACCCAATATTGCTGGCCGTGAATCAACACATTGGCATTTTTC
* * *
501166 ATCATCTTTAAAACCCAATGTTGTTGGCCTTGAATCAACACATTGGCATTTTTC
1 -TCATCTTT-AAACCCAATATTGCTGGCCGTGAATCAACACATTGGCATTTTTC
* ** * * * * * *
501220 TCATCTTCAAGTCTAATGTCGCTGACCGTGAATCAGCACATTGACATCATTTTTC
1 TCATCTTTAAACCCAATATTGCTGGCCGTGAATCAACACATTG---GCATTTTTC
* *
501275 TCATCTTTGAACCCAATATTGTTGGCCGTGAATCAAC
1 TCATCTTTAAACCCAATATTGCTGGCCGTGAATCAAC
501312 GTATTGGTCT
Statistics
Matches: 112, Mismatches: 28, Indels: 7
0.76 0.19 0.05
Matches are distributed among these distances:
52 35 0.31
53 39 0.35
54 3 0.03
55 35 0.31
ACGTcount: A:0.26, C:0.24, G:0.15, T:0.35
Consensus pattern (52 bp):
TCATCTTTAAACCCAATATTGCTGGCCGTGAATCAACACATTGGCATTTTTC
Found at i:501826 original size:36 final size:34
Alignment explanation
Indices: 501747--502001 Score: 196
Period size: 31 Copynumber: 7.7 Consensus size: 34
501737 TGGGGATGAA
*
501747 TTTT-AAGTCCACGACTCCGTGGCACC---TT-C
1 TTTTAAAGTCCACAACTCCGTGGCACCTTGTTCC
* *
501776 TTTTCAAAGCCCACAACTCCGTGGCACGCTTTTTCCC
1 TTTT-AAAGTCCACAACTCCGTGGCAC-CTTGTT-CC
* *
501813 TTTTAAAGTCCACAACCCCGTGGCCCCTTGTTCC
1 TTTTAAAGTCCACAACTCCGTGGCACCTTGTTCC
* * *
501847 TTTT-ATGTCCACGACTCCGTGGCA-C--ATTCC
1 TTTTAAAGTCCACAACTCCGTGGCACCTTGTTCC
* * * *
501877 TTTCAAAGTCCGCGACTCTGTGGCACC---TT-C
1 TTTTAAAGTCCACAACTCCGTGGCACCTTGTTCC
* *
501907 TTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCC
1 TTTT-AAAGTCCACAACTCCGTGGCAC-CTTGTT-CC
*
501944 TTTTAAAGCCCACAACTCCGTGGCACCTTGTT-C
1 TTTTAAAGTCCACAACTCCGTGGCACCTTGTTCC
* * *
501977 TTTTTAAGTCCAAAACTTCGTGGCA
1 TTTTAAAGTCCACAACTCCGTGGCA
502002 TCTTTCACCC
Statistics
Matches: 184, Mismatches: 25, Indels: 30
0.77 0.10 0.13
Matches are distributed among these distances:
29 4 0.02
30 11 0.06
31 56 0.30
32 4 0.02
33 38 0.21
34 6 0.03
35 14 0.08
36 41 0.22
37 10 0.05
ACGTcount: A:0.19, C:0.34, G:0.15, T:0.31
Consensus pattern (34 bp):
TTTTAAAGTCCACAACTCCGTGGCACCTTGTTCC
Found at i:501988 original size:131 final size:131
Alignment explanation
Indices: 501751--501988 Score: 404
Period size: 131 Copynumber: 1.8 Consensus size: 131
501741 GATGAATTTT
501751 AAGTCCACGACTCCGTGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACGCTTTTTCCCTTT
1 AAGTCCACGACTCCGTGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACGCTTTTTCCCTTT
* * *
501816 TAAAGTCCACAACCCCGTGGCCCCTTGTTCCTTTTATGTCCACGACTCCGTGGCACATTCCTTTC
66 TAAAGCCCACAACCCCGTGGCACCTTGTTCCTTTTAAGTCCACGACTCCGTGGCACATTCCTTTC
501881 A
131 A
* * *
501882 AAGTCCGCGACTCTGTGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTT
1 AAGTCCACGACTCCGTGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACGCTTTTTCCCTTT
* *
501947 TAAAGCCCACAACTCCGTGGCACCTTGTTCTTTTTAAGTCCA
66 TAAAGCCCACAACCCCGTGGCACCTTGTTCCTTTTAAGTCCA
501989 AAACTTCGTG
Statistics
Matches: 99, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
131 99 1.00
ACGTcount: A:0.19, C:0.35, G:0.15, T:0.31
Consensus pattern (131 bp):
AAGTCCACGACTCCGTGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACGCTTTTTCCCTTT
TAAAGCCCACAACCCCGTGGCACCTTGTTCCTTTTAAGTCCACGACTCCGTGGCACATTCCTTTC
A
Found at i:502057 original size:33 final size:33
Alignment explanation
Indices: 502008--502146 Score: 208
Period size: 33 Copynumber: 4.2 Consensus size: 33
501998 GGCATCTTTC
502008 ACCCTT-TCTAAAGCCCACACAAGTCGGTGGCA
1 ACCCTTCTCTAAAGCCCACACAAGTCGGTGGCA
* * *
502040 AACCTTCCCTAAAGCCCACACAAGTTGGTGGCA
1 ACCCTTCTCTAAAGCCCACACAAGTCGGTGGCA
** *
502073 ACCCCACTCTAAAGCCCACACAAGTGGGTGGCA
1 ACCCTTCTCTAAAGCCCACACAAGTCGGTGGCA
*
502106 ACCCTTCTCTAAAGCCCACGCAAGTCGGTGGCA
1 ACCCTTCTCTAAAGCCCACACAAGTCGGTGGCA
502139 ACCCTTCT
1 ACCCTTCT
502147 AAGCCCAAGG
Statistics
Matches: 94, Mismatches: 12, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
32 5 0.05
33 89 0.95
ACGTcount: A:0.27, C:0.36, G:0.19, T:0.18
Consensus pattern (33 bp):
ACCCTTCTCTAAAGCCCACACAAGTCGGTGGCA
Found at i:502210 original size:49 final size:49
Alignment explanation
Indices: 502146--502693 Score: 598
Period size: 49 Copynumber: 11.7 Consensus size: 49
502136 GCAACCCTTC
* *
502146 TAAGCCCAAGGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
*
502195 TAAGTCCAATGTAGCTGGCCTTAAATCAGCATATTGGCA-C--CTTC--
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
* * * *
502239 -AAGTCTAATATCGCTGGCCTTGAATCAACATATTGGCA----C--CTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
* * *
502281 TAAGTCCAATATAACTGGCCTTGAATCAACATATTGGCACCTTCTTCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
* * *
502330 TAAGTCTAATGTAGCTGGCCTTGAATCAACACATTGGCA-C--CTTC--
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
* * *
502374 -AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCTCCTTCTTCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
*
502422 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA-C--CTTC--
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
* * * *
502466 -AAGTCTAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
502514 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
* *
502563 TAAGTCCAATGTAGCTGGCCTTGAATTAGCACATTGGCA----C--CTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
* *
502606 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACC--TT-CTTCTT
* * * *
502658 TAAGTTCAATGTAGCTAGCTTTGAATCAGCACATTG
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTG
502694 ACATCCTTTT
Statistics
Matches: 425, Mismatches: 44, Indels: 57
0.81 0.08 0.11
Matches are distributed among these distances:
40 1 0.00
42 1 0.00
43 173 0.41
44 2 0.00
45 1 0.00
46 19 0.04
47 1 0.00
48 3 0.01
49 189 0.44
50 1 0.00
52 34 0.08
ACGTcount: A:0.26, C:0.25, G:0.18, T:0.32
Consensus pattern (49 bp):
TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
Found at i:502314 original size:22 final size:20
Alignment explanation
Indices: 502252--502318 Score: 57
Period size: 19 Copynumber: 3.2 Consensus size: 20
502242 TCTAATATCG
502252 CTGGCCTTGAATCAACATAT
1 CTGGCCTTGAATCAACATAT
* * *
502272 -TGGCACCTTTAAGTCCAATATAA
1 CTGG--CCTTGAA-T-CAACATAT
502295 CTGGCCTTGAATCAACATAT
1 CTGGCCTTGAATCAACATAT
502315 -TGGC
1 CTGGC
502319 ACCTTCTTCT
Statistics
Matches: 36, Mismatches: 6, Indels: 11
0.68 0.11 0.21
Matches are distributed among these distances:
19 7 0.19
20 6 0.17
21 7 0.19
22 7 0.19
23 6 0.17
24 3 0.08
ACGTcount: A:0.30, C:0.24, G:0.16, T:0.30
Consensus pattern (20 bp):
CTGGCCTTGAATCAACATAT
Found at i:502336 original size:92 final size:92
Alignment explanation
Indices: 502146--502649 Score: 591
Period size: 92 Copynumber: 5.5 Consensus size: 92
502136 GCAACCCTTC
* * *
502146 TAAGCCCAAGGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGTAGCT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCA----C--CTTTAAGTCCAATATAGCT
*
502211 GGCCTTAAATCAGCATATTGGCA-C--CTTC--
60 GGCCTTGAATCAGCATATTGGCACCTTCTTCTT
* * * * *
502239 -AAGTCTAATATCGCTGGCCTTGAATCAACATATTGGCACCTTTAAGTCCAATATAACTGGCCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTTAAGTCCAATATAGCTGGCCTT
*
502303 GAATCAACATATTGGCACCTTCTTCTT
66 GAATCAGCATATTGGCACCTTCTTCTT
* * * * *
502330 TAAGTCTAATGTAGCTGGCCTTGAATCAACACATTGGCACCTTCAAGTCCAATATCGCTGGCCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTTAAGTCCAATATAGCTGGCCTT
*
502395 GAATCAGCATATTGGCTCCTTCTTCTT
66 GAATCAGCATATTGGCACCTTCTTCTT
* * * *
502422 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCAAGTCTAATATCGCTGGCCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTTAAGTCCAATATAGCTGGCCTT
*
502487 GAATCAGCATATTGGCACCTTCATCTT
66 GAATCAGCATATTGGCACCTTCTTCTT
*
502514 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGTAGCT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCA----C--CTTTAAGTCCAATATAGCT
* *
502579 GGCCTTGAATTAGCACATTGGCA----C--CTT
60 GGCCTTGAATCAGCATATTGGCACCTTCTTCTT
*
502606 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTT
502650 TCCATCTTTA
Statistics
Matches: 368, Mismatches: 31, Indels: 31
0.86 0.07 0.07
Matches are distributed among these distances:
86 42 0.11
87 1 0.00
88 2 0.01
89 4 0.01
92 281 0.76
94 1 0.00
96 1 0.00
98 36 0.10
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.32
Consensus pattern (92 bp):
TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTTAAGTCCAATATAGCTGGCCTT
GAATCAGCATATTGGCACCTTCTTCTT
Found at i:502649 original size:43 final size:43
Alignment explanation
Indices: 502157--502649 Score: 500
Period size: 43 Copynumber: 10.8 Consensus size: 43
502147 AAGCCCAAGG
*
502157 TAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATG
1 TAGCTGGCCTTGAATCAGCATATTGGCA----C--CTTTAAGTCCAATA
* * *
502206 TAGCTGGCCTTAAATCAGCATATTGGCACCTTCAAGTCTAATA
1 TAGCTGGCCTTGAATCAGCATATTGGCACCTTTAAGTCCAATA
* *
502249 TCGCTGGCCTTGAATCAACATATTGGCACCTTTAAGTCCAATA
1 TAGCTGGCCTTGAATCAGCATATTGGCACCTTTAAGTCCAATA
* * * *
502292 TAACTGGCCTTGAATCAACATATTGGCACCTTCTTCTTTAAGTCTAATG
1 TAGCTGGCCTTGAATCAGCATATTGGCA----C--CTTTAAGTCCAATA
* * *
502341 TAGCTGGCCTTGAATCAACACATTGGCACCTTCAAGTCCAATA
1 TAGCTGGCCTTGAATCAGCATATTGGCACCTTTAAGTCCAATA
* * *
502384 TCGCTGGCCTTGAATCAGCATATTGGCTCCTTCTTCTTTAAGTCCAATG
1 TAGCTGGCCTTGAATCAGCATATTGG---C-AC--CTTTAAGTCCAATA
* * *
502433 TAGCTGGCCTTGAATCAGCACATTGGCACCTTCAAGTCTAATA
1 TAGCTGGCCTTGAATCAGCATATTGGCACCTTTAAGTCCAATA
* *
502476 TCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATG
1 TAGCTGGCCTTGAATCAGCATATTGGCA----C--CTTTAAGTCCAATA
*
502525 TAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATG
1 TAGCTGGCCTTGAATCAGCATATTGGCA----C--CTTTAAGTCCAATA
* *
502574 TAGCTGGCCTTGAATTAGCACATTGGCACCTTTAAGTCCAATA
1 TAGCTGGCCTTGAATCAGCATATTGGCACCTTTAAGTCCAATA
502617 TAGCTGGCCTTGAATCAGCATATTGGCACCTTT
1 TAGCTGGCCTTGAATCAGCATATTGGCACCTTT
502650 TCCATCTTTA
Statistics
Matches: 384, Mismatches: 42, Indels: 42
0.82 0.09 0.09
Matches are distributed among these distances:
43 190 0.49
45 4 0.01
46 2 0.01
47 3 0.01
49 185 0.48
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.32
Consensus pattern (43 bp):
TAGCTGGCCTTGAATCAGCATATTGGCACCTTTAAGTCCAATA
Found at i:502682 original size:52 final size:55
Alignment explanation
Indices: 502603--502940 Score: 187
Period size: 52 Copynumber: 6.1 Consensus size: 55
502593 ACATTGGCAC
* * *
502603 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-CC-TTTTC-CAT
1 CTTTAAGTCCAATATAGCTAGCCTTGAATCAGCACATTGACATCCTTTTTCTCAT
* * *
502655 CTTTAAGTTCAATGTAGCTAGCTTTGAATCAGCACATTGACATCCTTTTTCTCAT
1 CTTTAAGTCCAATATAGCTAGCCTTGAATCAGCACATTGACATCCTTTTTCTCAT
* * * * * * * *
502710 CTTTAGGCCCAATATCGTTGGCCGTGAATCAACATATTGGCATCTTTATCACTTTTCTCATCTTC
1 CTTTAAGTCCAATATAGCTAGCCTTGAATCAGCACATT-G-A-C---ATC-C-TTT-T--TC-TC
502775 AT
54 AT
* * * *
502777 CTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATATTGGCA-CC---TTCATCAT
1 CTTTAAGTCCAATATAGCTAGCCTTGAATCAGCACATTGACATCCTTTTTC-TCAT
** * * * * *
502829 CTTTAAAACCCAATGTTGTTGGCCTTGAATCAGCACATTGGCA---TTTTTCTCAT
1 CTTT-AAGTCCAATATAGCTAGCCTTGAATCAGCACATTGACATCCTTTTTCTCAT
* * * *
502882 CTTCAAGTCTAATGTCA-CT-GACCGTGAATCAGCACATTGACATCCTTTTTCTCAT
1 CTTTAAGTCCAATAT-AGCTAG-CCTTGAATCAGCACATTGACATCCTTTTTCTCAT
502937 CTTT
1 CTTT
502941 GAACTCAATA
Statistics
Matches: 223, Mismatches: 39, Indels: 45
0.73 0.13 0.15
Matches are distributed among these distances:
51 1 0.00
52 74 0.33
53 42 0.19
54 9 0.04
55 43 0.19
56 1 0.00
57 1 0.00
58 1 0.00
59 1 0.00
60 1 0.00
61 4 0.02
62 1 0.00
63 3 0.01
64 2 0.01
66 3 0.01
67 36 0.16
ACGTcount: A:0.24, C:0.25, G:0.14, T:0.37
Consensus pattern (55 bp):
CTTTAAGTCCAATATAGCTAGCCTTGAATCAGCACATTGACATCCTTTTTCTCAT
Found at i:502814 original size:67 final size:68
Alignment explanation
Indices: 502706--502832 Score: 175
Period size: 67 Copynumber: 1.9 Consensus size: 68
502696 ATCCTTTTTC
* * * *
502706 TCATCTTTAGGCCCAATATCGTTGGCCGTGAATCAACATATTGGCATCTTTATCA-CTTTTCTCA
1 TCATCTTTAAGCCCAATATCGCTGGCCGTGAATCAACATATTGGCACCTTCATCATCTTTTCTCA
502770 TCT
66 TCT
* * * *
502773 TCATCTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATATTGGCACCTTCATCATCTTT
1 TCATCTTTAAGCCCAATATCGCTGGCCGTGAATCAACATATTGGCACCTTCATCATCTTT
502833 AAAACCCAAT
Statistics
Matches: 51, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
67 47 0.92
68 4 0.08
ACGTcount: A:0.23, C:0.25, G:0.13, T:0.39
Consensus pattern (68 bp):
TCATCTTTAAGCCCAATATCGCTGGCCGTGAATCAACATATTGGCACCTTCATCATCTTTTCTCA
TCT
Found at i:502952 original size:227 final size:228
Alignment explanation
Indices: 502621--503047 Score: 580
Period size: 227 Copynumber: 1.9 Consensus size: 228
502611 CCAATATAGC
* * **
502621 TGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTTCAATGTAGCTAGCTTTGAATCA
1 TGGCCTTGAATCAGCACATTGGCACCTTTTCCATCTTCAAGTTCAATGTAGCTAGCCGTGAATCA
* *
502686 GCACATTGACATCCTTTTTCTCATCTTTAGGCCCAATATCGTTGGCCGTGAATCAACATATTGG-
66 GCACATTGACATCCTTTTTCTCATCTTTAGACCCAATATCGTTGGCCATGAATCAACATATTGGT
** * * *
502750 CATCTTTATCACTTTTC-TCATCTTCATCTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATAT
131 CAT-TTTATCACTCGTCATCATCATCATCTTTAAGTCCAATATTGCAGGCCTTGAATCAGCATAG
502814 TGGCACCTTCATCATCTTTAAAACCCAATGTTGT
195 TGGCACCTTCATCATCTTTAAAACCCAATGTTGT
*
502848 TGGCCTTGAATCAGCACATTGGCA-TTTTTCTCATCTTCAAG-TCTAATGTCA-CT-GACCGTGA
1 TGGCCTTGAATCAGCACATTGGCACCTTTTC-CATCTTCAAGTTC-AATGT-AGCTAG-CCGTGA
* *
502909 ATCAGCACATTGACATCCTTTTTCTCATCTTT-GAACTCAATATCGTTGGCCATGAATCAACGTA
62 ATCAGCACATTGACATCCTTTTTCTCATCTTTAG-ACCCAATATCGTTGGCCATGAATCAACATA
* * * * *
502973 TTGGTCCTTTTATCACTCGTCATCCTCATCATCTTTAAGTCCAGTGTTGCAGGCCTTGAATCTGC
126 TTGGTCATTTTATCACTCGTCATCATCATCATCTTTAAGTCCAATATTGCAGGCCTTGAATCAGC
503038 ATAGTGGCAC
191 ATAGTGGCAC
503048 ATTATAATGA
Statistics
Matches: 174, Mismatches: 19, Indels: 13
0.84 0.09 0.06
Matches are distributed among these distances:
226 9 0.05
227 116 0.67
228 49 0.28
ACGTcount: A:0.24, C:0.25, G:0.15, T:0.36
Consensus pattern (228 bp):
TGGCCTTGAATCAGCACATTGGCACCTTTTCCATCTTCAAGTTCAATGTAGCTAGCCGTGAATCA
GCACATTGACATCCTTTTTCTCATCTTTAGACCCAATATCGTTGGCCATGAATCAACATATTGGT
CATTTTATCACTCGTCATCATCATCATCTTTAAGTCCAATATTGCAGGCCTTGAATCAGCATAGT
GGCACCTTCATCATCTTTAAAACCCAATGTTGT
Found at i:503484 original size:36 final size:34
Alignment explanation
Indices: 503405--503684 Score: 192
Period size: 31 Copynumber: 8.4 Consensus size: 34
503395 TGGGGATGAA
* *
503405 TTTT-AAGTCCACGACTCCGTGGCACC---TT-C
1 TTTTAAAGCCCACAACTCCGTGGCACCTTTTTCC
503434 TTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCC
1 TTTT-AAAGCCCACAACTCCGTGGCAC-CTTTTT-CC
* * * ** *
503471 TTTTAAAGTCCACAACCCCATGGTGCCTTGTTCC
1 TTTTAAAGCCCACAACTCCGTGGCACCTTTTTCC
* *
503505 TTTT-AAGTCCACGACTCCGTGGCACC---TTCC
1 TTTTAAAGCCCACAACTCCGTGGCACCTTTTTCC
* * * *
503535 TTTCAAAGTCCACGACTCTGTGGCACC---TT-C
1 TTTTAAAGCCCACAACTCCGTGGCACCTTTTTCC
503565 TTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCTC
1 TTTT-AAAGCCCACAACTCCGTGGCAC-CTTTTTC-C
* *
503602 TTTTAAAGCCCACAACTCCGTGGCACCATGTT-C
1 TTTTAAAGCCCACAACTCCGTGGCACCTTTTTCC
* * * * **
503635 TTTTTAAGTCCACAACTTCGTGGCATCTTTGACCC
1 TTTTAAAGCCCACAACTCCGTGGCACCTTT-TTCC
503670 TTTCTAAAGCCCACA
1 TTT-TAAAGCCCACA
503685 CAAGTCGGTG
Statistics
Matches: 201, Mismatches: 31, Indels: 31
0.76 0.12 0.12
Matches are distributed among these distances:
29 4 0.02
30 11 0.05
31 61 0.30
32 2 0.01
33 42 0.21
34 6 0.03
35 17 0.08
36 48 0.24
37 10 0.05
ACGTcount: A:0.20, C:0.34, G:0.14, T:0.32
Consensus pattern (34 bp):
TTTTAAAGCCCACAACTCCGTGGCACCTTTTTCC
Found at i:503525 original size:69 final size:68
Alignment explanation
Indices: 503405--503684 Score: 245
Period size: 69 Copynumber: 4.2 Consensus size: 68
503395 TGGGGATGAA
* * * ** *
503405 TTTT-AAGTCCACGACTCCGTGGCACCTTCTT-TTCAAAGCCCACAACTCCGTGGCACTCTTTTT
1 TTTTAAAGCCCACAACTCCGTGGCACCTTGTTCTTTTAAGTCCACAACTCCGTGGCACTCTTTTT
503468 CCC
66 CCC
* * * ** *
503471 TTTTAAAGTCCACAACCCCATGGTGCCTTGTTCCTTTTAAGTCCACGACTCCGTGGCAC-C---T
1 TTTTAAAGCCCACAACTCCGTGGCACCTTGTT-CTTTTAAGTCCACAACTCCGTGGCACTCTTTT
503532 T-CC
65 TCCC
* * * * * ** *
503535 TTTCAAAGTCCACGACTCTGTGGCACCTTCTT-TTCAAAGCCCACAACTCCGTGGCACTCTTTTT
1 TTTTAAAGCCCACAACTCCGTGGCACCTTGTTCTTTTAAGTCCACAACTCCGTGGCACTCTTTTT
*
503599 CTC
66 CCC
* * *
503602 TTTTAAAGCCCACAACTCCGTGGCACCATGTTCTTTTTAAGTCCACAACTTCGTGGCA-TCTTTG
1 TTTTAAAGCCCACAACTCCGTGGCACCTTGTTC-TTTTAAGTCCACAACTCCGTGGCACTCTTTT
*
503666 ACCC
65 TCCC
503670 TTTCTAAAGCCCACA
1 TTT-TAAAGCCCACA
503685 CAAGTCGGTG
Statistics
Matches: 167, Mismatches: 36, Indels: 19
0.75 0.16 0.09
Matches are distributed among these distances:
62 21 0.13
63 1 0.01
64 26 0.16
65 2 0.01
66 6 0.04
67 48 0.29
68 11 0.07
69 52 0.31
ACGTcount: A:0.20, C:0.34, G:0.14, T:0.32
Consensus pattern (68 bp):
TTTTAAAGCCCACAACTCCGTGGCACCTTGTTCTTTTAAGTCCACAACTCCGTGGCACTCTTTTT
CCC
Found at i:503643 original size:131 final size:131
Alignment explanation
Indices: 503409--503659 Score: 403
Period size: 131 Copynumber: 1.9 Consensus size: 131
503399 GATGAATTTT
503409 AAGTCCACGACTCCGTGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTT
1 AAGTCCACGACTCCGTGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTT
* ** * *
503474 TAAAGTCCACAACCCCATGGTGCCTTGTTCCTTTTAAGTCCACGACTCCGTGGCACCTTCCTTTC
66 TAAAGCCCACAACCCCATGGCACCATGTTCCTTTTAAGTCCACAACTCCGTGGCACCTTCCTTTC
503539 A
131 A
* *
503540 AAGTCCACGACTCTGTGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCTCTTT
1 AAGTCCACGACTCCGTGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTT
* * * *
503605 TAAAGCCCACAACTCCGTGGCACCATGTTCTTTTTAAGTCCACAACTTCGTGGCA
66 TAAAGCCCACAACCCCATGGCACCATGTTCCTTTTAAGTCCACAACTCCGTGGCA
503660 TCTTTGACCC
Statistics
Matches: 109, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
131 109 1.00
ACGTcount: A:0.20, C:0.34, G:0.15, T:0.31
Consensus pattern (131 bp):
AAGTCCACGACTCCGTGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTT
TAAAGCCCACAACCCCATGGCACCATGTTCCTTTTAAGTCCACAACTCCGTGGCACCTTCCTTTC
A
Found at i:503714 original size:33 final size:33
Alignment explanation
Indices: 503668--503836 Score: 218
Period size: 33 Copynumber: 5.2 Consensus size: 33
503658 CATCTTTGAC
503668 CCTT-TCTAAAGCCCACACAAGTCGGTGGCAAA
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
*
503700 CGTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
* ** *
503733 CCTTCCCTAAAGCCCACACAAGTTAGTGGCAAC
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
** *
503766 CCCACTCTAAAGCCCACACAAGTTGGTGGC-AA
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
* *
503798 CCATTCTCTAAAG-CCACGCAAGTCGGTGGCAAC
1 CC-TTCTCTAAAGCCCACACAAGTCGGTGGCAAA
503831 CCTTCT
1 CCTTCT
503837 AAGCCCAATA
Statistics
Matches: 118, Mismatches: 16, Indels: 6
0.84 0.11 0.04
Matches are distributed among these distances:
32 25 0.21
33 93 0.79
ACGTcount: A:0.29, C:0.34, G:0.18, T:0.19
Consensus pattern (33 bp):
CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
Found at i:503717 original size:69 final size:69
Alignment explanation
Indices: 503405--503717 Score: 172
Period size: 69 Copynumber: 4.7 Consensus size: 69
503395 TGGGGATGAA
* * *
503405 TTTT-AAGTCCACGACTCCGTGGCAC--C-TTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTT
1 TTTTAAAGCCCACAACTCCGTGGCACAACGTTCTTCT-AAAGCCCACAACTCCGTGGCACTCTTT
**
503466 TTCCC
65 GACCC
* * * ** *** * * *
503471 TTTTAAAGTCCACAACCCCATGGTGCCTTGTTCCTT-TTAAGTCCACGACTCCGTGGCAC-C-TT
1 TTTTAAAGCCCACAACTCCGTGGCACAACGTT-CTTCTAAAGCCCACAACTCCGTGGCACTCTTT
503533 ---CC
65 GACCC
* * * * *
503535 TTTCAAAGTCCACGACTCTGTGGCAC--C-TTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTT
1 TTTTAAAGCCCACAACTCCGTGGCACAACGTTCTTCT-AAAGCCCACAACTCCGTGGCACTCTTT
** *
503597 TTCTC
65 GACCC
* * * * * *
503602 TTTTAAAGCCCACAACTCCGTGGCACCATGTTCTTTTTAAGTCCACAACTTCGTGGCA-TCTTTG
1 TTTTAAAGCCCACAACTCCGTGGCACAACGTTCTTCTAAAGCCCACAACTCCGTGGCACTCTTTG
503666 ACCC
66 ACCC
* *
503670 TTTCTAAAGCCCACACAAGTCGGTGGCA-AACGTTC-TCTAAAGCCCACA
1 TTT-TAAAG-CC-CACAACTCCGTGGCACAACGTTCTTCTAAAGCCCACA
503718 CAAGTCGGTG
Statistics
Matches: 190, Mismatches: 39, Indels: 33
0.73 0.15 0.13
Matches are distributed among these distances:
60 3 0.02
61 3 0.02
62 19 0.10
63 1 0.01
64 23 0.12
66 4 0.02
67 41 0.22
68 11 0.06
69 52 0.27
70 17 0.09
71 16 0.08
ACGTcount: A:0.21, C:0.34, G:0.15, T:0.30
Consensus pattern (69 bp):
TTTTAAAGCCCACAACTCCGTGGCACAACGTTCTTCTAAAGCCCACAACTCCGTGGCACTCTTTG
ACCC
Found at i:503900 original size:49 final size:49
Alignment explanation
Indices: 503836--504383 Score: 607
Period size: 49 Copynumber: 11.7 Consensus size: 49
503826 GCAACCCTTC
* *
503836 TAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
*
503885 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA-C--CTTC--
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
* * *
503929 -ATGTCTAATGTCGCTGGCCTTGAATCAGCATATTGGCA----C--CTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
* * *
503971 TAAGTCCAATATAACTGGCCTTGAATCAACATATTGGCACCTTCTTCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
* * *
504020 TAAGTCTAATGTAGCTGGCCTTGAATCAACACATTGGCA-C--CTTC--
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
* * *
504064 -AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCTCCTTCTTCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
*
504112 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA-C--CTTC--
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
* * * *
504156 -AAGTCTAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
504204 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
* *
504253 TAAGTCCAATGTAGCTGGCCTTGAATTAGCACATTGGCA----C--CTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
* * *
504296 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACATTTTCCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCAC--CTT-CTTCTT
* * *
504348 TAAGTTCAATGTAGCTGGCTTTGAATCAGCACATTG
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTG
504384 ACATCTTTTT
Statistics
Matches: 424, Mismatches: 45, Indels: 57
0.81 0.09 0.11
Matches are distributed among these distances:
40 1 0.00
42 1 0.00
43 171 0.40
44 2 0.00
45 1 0.00
46 19 0.04
47 1 0.00
48 3 0.01
49 189 0.45
50 1 0.00
52 35 0.08
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.32
Consensus pattern (49 bp):
TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
Found at i:503970 original size:21 final size:21
Alignment explanation
Indices: 503946--504013 Score: 59
Period size: 21 Copynumber: 3.2 Consensus size: 21
503936 ATGTCGCTGG
*
503946 CCTTGAATCAGCATATTGGCA
1 CCTTGAATCAACATATTGGCA
* * *
503967 CCTTTAAGTCCAATATAACTGG--
1 CCTTGAA-T-CAACAT-ATTGGCA
503989 CCTTGAATCAACATATTGGCA
1 CCTTGAATCAACATATTGGCA
504010 CCTT
1 CCTT
504014 CTTCTTTAAG
Statistics
Matches: 35, Mismatches: 7, Indels: 10
0.67 0.13 0.19
Matches are distributed among these distances:
19 4 0.11
20 5 0.14
21 11 0.31
22 7 0.20
23 4 0.11
24 4 0.11
ACGTcount: A:0.29, C:0.25, G:0.15, T:0.31
Consensus pattern (21 bp):
CCTTGAATCAACATATTGGCA
Found at i:504027 original size:92 final size:92
Alignment explanation
Indices: 503836--504335 Score: 592
Period size: 92 Copynumber: 5.4 Consensus size: 92
503826 GCAACCCTTC
* * *
503836 TAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGTAGCT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCA----C--CTTTAAGTCCAATATAGCT
*
503901 GGCCTTGAATCAGCACATTGGCA-C--CTTC--
60 GGCCTTGAATCAGCATATTGGCACCTTCTTCTT
* * * *
503929 -ATGTCTAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTTAAGTCCAATATAACTGGCCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTTAAGTCCAATATAGCTGGCCTT
*
503993 GAATCAACATATTGGCACCTTCTTCTT
66 GAATCAGCATATTGGCACCTTCTTCTT
* * * * *
504020 TAAGTCTAATGTAGCTGGCCTTGAATCAACACATTGGCACCTTCAAGTCCAATATCGCTGGCCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTTAAGTCCAATATAGCTGGCCTT
*
504085 GAATCAGCATATTGGCTCCTTCTTCTT
66 GAATCAGCATATTGGCACCTTCTTCTT
* * * *
504112 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCAAGTCTAATATCGCTGGCCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTTAAGTCCAATATAGCTGGCCTT
*
504177 GAATCAGCATATTGGCACCTTCATCTT
66 GAATCAGCATATTGGCACCTTCTTCTT
*
504204 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGTAGCT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCA----C--CTTTAAGTCCAATATAGCT
* *
504269 GGCCTTGAATTAGCACATTGGCA----C--CTT
60 GGCCTTGAATCAGCATATTGGCACCTTCTTCTT
*
504296 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCAC
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCAC
504336 ATTTTCCATC
Statistics
Matches: 364, Mismatches: 31, Indels: 29
0.86 0.07 0.07
Matches are distributed among these distances:
86 38 0.10
87 1 0.00
88 2 0.01
89 4 0.01
92 281 0.77
94 1 0.00
96 1 0.00
98 36 0.10
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.32
Consensus pattern (92 bp):
TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTTAAGTCCAATATAGCTGGCCTT
GAATCAGCATATTGGCACCTTCTTCTT
Found at i:504363 original size:52 final size:55
Alignment explanation
Indices: 504293--504665 Score: 221
Period size: 52 Copynumber: 6.7 Consensus size: 55
504283 ACATTGGCAC
504293 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-C-ATTTTC-CAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCTATTTTCTCAT
* * * * * *
504345 CTTTAAGTTCAATGTAGCTGGCTTTGAATCAGCACATTGACATCTTTTTTCTCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCTATTTTCTCAT
* * * * *
504400 CTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTGGCATCTTTATCACTTTTCTCATCTTC
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATC----T-A---TT-T--TC-TC
504465 AT
54 AT
* * *
504467 CTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATATTGGCA-C---CTTATCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCTATTTTCTCAT
** * * * *
504518 CTTTAAAACCCAATGTTGTTGGCCTTGAATCAGCACATTGGCA--T-TTTTCTCAT
1 CTTT-AAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCTATTTTCTCAT
* * * * * * * *
504571 CTTCAAGTCTAATGTCGCTGACCGTGAATCAGCACATTGACATCCT-TTTTCTCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCAT-CTATTTTCTCAT
* * * * * *
504626 CTTTGAA-CCCAATATCGTTGGCCGTGAATCAACGTATTGG
1 CTTT-AAGTCCAATATAGCTGGCCTTGAATCAGCATATTGG
504666 TCCTTTTATC
Statistics
Matches: 249, Mismatches: 50, Indels: 41
0.73 0.15 0.12
Matches are distributed among these distances:
51 8 0.03
52 101 0.41
53 10 0.04
54 6 0.02
55 74 0.30
56 2 0.01
59 1 0.00
63 2 0.01
64 1 0.00
66 3 0.01
67 41 0.16
ACGTcount: A:0.25, C:0.24, G:0.15, T:0.36
Consensus pattern (55 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCTATTTTCTCAT
Found at i:504504 original size:67 final size:67
Alignment explanation
Indices: 504396--504521 Score: 182
Period size: 67 Copynumber: 1.9 Consensus size: 67
504386 ATCTTTTTTC
* *
504396 TCATCTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTGGCATCTTTATCA-CTTTTCTCA
1 TCATCTTTAAGCCCAATATCGCTGGCCGTGAATCAACATATTGGCA-CCTTATCATCTTTTCTCA
504460 TCT
65 TCT
* * * *
504463 TCATCTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATATTGGCACCTTATCATCTTT
1 TCATCTTTAAGCCCAATATCGCTGGCCGTGAATCAACATATTGGCACCTTATCATCTTT
504522 AAAACCCAAT
Statistics
Matches: 52, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
66 7 0.13
67 45 0.87
ACGTcount: A:0.24, C:0.25, G:0.13, T:0.39
Consensus pattern (67 bp):
TCATCTTTAAGCCCAATATCGCTGGCCGTGAATCAACATATTGGCACCTTATCATCTTTTCTCAT
CT
Found at i:504639 original size:226 final size:227
Alignment explanation
Indices: 504311--504736 Score: 603
Period size: 226 Copynumber: 1.9 Consensus size: 227
504301 CCAATATAGC
* * * **
504311 TGGCCTTGAATCAGCATATTGGCACATTTTCCATCTTTAAGTTCAATGTAGCTGGCTTTGAATCA
1 TGGCCTTGAATCAGCACATTGGCACATTTTCCATCTTCAAGTTCAATGTAGCTGACCGTGAATCA
*
504376 GCACATTGACATCTTTTTTCTCATCTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTGG-
66 GCACATTGACATCCTTTTTCTCATCTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTGGT
** *
504440 CATCTTTATCACTTTTC-TCATCT-TCATCTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATA
131 CAT-TTTATCACTCGTCATCAT-TATCATCTTTAAGTCCAATATTGCAGGCCTTGAATCAGCATA
*
504503 TTGGCACCTTATCATCTTTAAAACCCAATGTTGT
194 GTGGCACCTTATCATCTTTAAAACCCAATGTTGT
* *
504537 TGGCCTTGAATCAGCACATTGGCA-TTTTTCTCATCTTCAAG-TCTAATGTCGCTGACCGTGAAT
1 TGGCCTTGAATCAGCACATTGGCACATTTTC-CATCTTCAAGTTC-AATGTAGCTGACCGTGAAT
*
504600 CAGCACATTGACATCCTTTTTCTCATCTTTGAA-CCCAATATCGTTGGCCGTGAATCAACGTATT
64 CAGCACATTGACATCCTTTTTCTCATCTTT-AAGCCCAATATCGTTGGCCGTGAATCAACATATT
* * * * *
504664 GGTCCTTTTATCACTCGTCATCCTTATCATCTTTAAGTCCAGTGTTGCAGGCCTTGAATCTGCAT
128 GGTCATTTTATCACTCGTCATCATTATCATCTTTAAGTCCAATATTGCAGGCCTTGAATCAGCAT
504729 AGTGGCAC
193 AGTGGCAC
504737 ATTGCAATGA
Statistics
Matches: 176, Mismatches: 18, Indels: 11
0.86 0.09 0.05
Matches are distributed among these distances:
225 7 0.04
226 120 0.68
227 49 0.28
ACGTcount: A:0.23, C:0.24, G:0.16, T:0.37
Consensus pattern (227 bp):
TGGCCTTGAATCAGCACATTGGCACATTTTCCATCTTCAAGTTCAATGTAGCTGACCGTGAATCA
GCACATTGACATCCTTTTTCTCATCTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTGGT
CATTTTATCACTCGTCATCATTATCATCTTTAAGTCCAATATTGCAGGCCTTGAATCAGCATAGT
GGCACCTTATCATCTTTAAAACCCAATGTTGT
Found at i:505185 original size:36 final size:33
Alignment explanation
Indices: 505094--505339 Score: 181
Period size: 36 Copynumber: 7.5 Consensus size: 33
505084 TGGGGATGAA
* * *
505094 TTTT-AAGTCCACGACTCTGTGGCACC--TTCT
1 TTTTAAAGTCCACAACTCCGTGGCACCTTTTCC
* * * *
505124 TTTTAAAGCCCGCAACTGCGAGGCACTCTTTTTCCC
1 TTTTAAAGTCCACAACTCCGTGGCAC-C-TTTT-CC
*
505160 TTTTAAAGTCCACAACCCCGTGGCACCTTGTTCC
1 TTTTAAAGTCCACAACTCCGTGGCACCTT-TTCC
*
505194 TTTT-AAGTCCACGACTCCGTGGCACC---TCC
1 TTTTAAAGTCCACAACTCCGTGGCACCTTTTCC
* * * **
505223 TTTCAAAGTCCGCGACTCTATGGCACC--TT-C
1 TTTTAAAGTCCACAACTCCGTGGCACCTTTTCC
*
505253 TTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCC
1 TTTT-AAAGTCCACAACTCCGTGGCAC-C-TTTT-CC
*
505290 TTTTAAAGCCCACAACTCCGTGGCACCTTATT-C
1 TTTTAAAGTCCACAACTCCGTGGCACCTT-TTCC
*
505323 TTTTTAAGTCCACAACT
1 TTTTAAAGTCCACAACT
505340 TCATGGCATC
Statistics
Matches: 173, Mismatches: 26, Indels: 31
0.75 0.11 0.13
Matches are distributed among these distances:
29 6 0.03
30 27 0.16
31 33 0.19
32 2 0.01
33 36 0.21
34 10 0.06
35 10 0.06
36 44 0.25
37 5 0.03
ACGTcount: A:0.20, C:0.34, G:0.14, T:0.32
Consensus pattern (33 bp):
TTTTAAAGTCCACAACTCCGTGGCACCTTTTCC
Found at i:505261 original size:31 final size:30
Alignment explanation
Indices: 505198--505279 Score: 92
Period size: 31 Copynumber: 2.7 Consensus size: 30
505188 TGTTCCTTTT
*
505198 AAGTCCACGACTCCGTGGCACCTCCTTTCA
1 AAGTCCACGACTCCATGGCACCTCCTTTCA
* * *
505228 AAGTCCGCGACTCTATGGCACCTTCTTTTCA
1 AAGTCCACGACTCCATGGCACC-TCCTTTCA
* * *
505259 AAGCCCACAACTCCGTGGCAC
1 AAGTCCACGACTCCATGGCAC
505280 TCTTTTTCCC
Statistics
Matches: 42, Mismatches: 9, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
30 19 0.45
31 23 0.55
ACGTcount: A:0.22, C:0.38, G:0.17, T:0.23
Consensus pattern (30 bp):
AAGTCCACGACTCCATGGCACCTCCTTTCA
Found at i:505331 original size:130 final size:130
Alignment explanation
Indices: 505098--505335 Score: 386
Period size: 130 Copynumber: 1.8 Consensus size: 130
505088 GATGAATTTT
* * * *
505098 AAGTCCACGACTCTGTGGCACCTTCTTTTTAAAGCCCGCAACTGCGAGGCACTCTTTTTCCCTTT
1 AAGTCCACGACTCTATGGCACCTTCTTTTCAAAGCCCACAACTCCGAGGCACTCTTTTTCCCTTT
* *
505163 TAAAGTCCACAACCCCGTGGCACCTTGTTCCTTTTAAGTCCACGACTCCGTGGCACCTCCTTTCA
66 TAAAGCCCACAACCCCGTGGCACCTTATTCCTTTTAAGTCCACGACTCCGTGGCACCTCCTTTCA
* *
505228 AAGTCCGCGACTCTATGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTT
1 AAGTCCACGACTCTATGGCACCTTCTTTTCAAAGCCCACAACTCCGAGGCACTCTTTTTCCCTTT
* *
505293 TAAAGCCCACAACTCCGTGGCACCTTATTCTTTTTAAGTCCAC
66 TAAAGCCCACAACCCCGTGGCACCTTATTCCTTTTAAGTCCAC
505336 AACTTCATGG
Statistics
Matches: 98, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
130 98 1.00
ACGTcount: A:0.20, C:0.34, G:0.15, T:0.31
Consensus pattern (130 bp):
AAGTCCACGACTCTATGGCACCTTCTTTTCAAAGCCCACAACTCCGAGGCACTCTTTTTCCCTTT
TAAAGCCCACAACCCCGTGGCACCTTATTCCTTTTAAGTCCACGACTCCGTGGCACCTCCTTTCA
Found at i:505372 original size:36 final size:34
Alignment explanation
Indices: 505252--505372 Score: 118
Period size: 36 Copynumber: 3.4 Consensus size: 34
505242 ATGGCACCTT
*
505252 CTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCC
1 CTTTT-AAAGCCCACAACTCCGTGGCA-TC-TTTACC
* **
505289 CTTTTAAAGCCCACAACTCCGTGGCA-CCTTATT
1 CTTTTAAAGCCCACAACTCCGTGGCATCTTTACC
* * * *
505322 CTTTTTAAGTCCACAACTTCATGGCATCTTTCACC
1 CTTTTAAAGCCCACAACTCCGTGGCATCTTT-ACC
505357 CTTTCTAAAGCCCACA
1 CTTT-TAAAGCCCACA
505373 CAAGTCGGTG
Statistics
Matches: 68, Mismatches: 13, Indels: 7
0.77 0.15 0.08
Matches are distributed among these distances:
33 24 0.35
34 4 0.06
35 5 0.07
36 30 0.44
37 5 0.07
ACGTcount: A:0.23, C:0.35, G:0.10, T:0.32
Consensus pattern (34 bp):
CTTTTAAAGCCCACAACTCCGTGGCATCTTTACC
Found at i:505397 original size:33 final size:33
Alignment explanation
Indices: 505356--505525 Score: 227
Period size: 33 Copynumber: 5.2 Consensus size: 33
505346 CATCTTTCAC
505356 CCTT-TCTAAAGCCCACACAAGTCGGTGGCAAA
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
*
505388 CGTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
* ** *
505421 CCTTCCCTAAAGCCCACACAAGTTAGTGGCAAC
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
** *
505454 CCCACTCTAAAGCCCACACAAGTTGGTGGC-AA
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
* *
505486 CCATTCTCTAAAGCCCACGCAAGTCGGTGGCAAC
1 CC-TTCTCTAAAGCCCACACAAGTCGGTGGCAAA
505520 CCTTCT
1 CCTTCT
505526 AAGCCCAATA
Statistics
Matches: 119, Mismatches: 16, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
32 6 0.05
33 110 0.92
34 3 0.03
ACGTcount: A:0.29, C:0.34, G:0.18, T:0.19
Consensus pattern (33 bp):
CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
Found at i:505589 original size:49 final size:49
Alignment explanation
Indices: 505525--505937 Score: 441
Period size: 49 Copynumber: 8.7 Consensus size: 49
505515 GCAACCCTTC
* *
505525 TAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
* *
505574 TAACTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA-C--CTTC--
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
*
505618 -AAGTCCAATATCA-CTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
1 TAAGTCCAATGT-AGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
*
505666 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA-C--CTTC--
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
* * * *
505710 -AAGTCTAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
* *
505758 TAAGTTCAATGTAGCTGGCCTTGAATCAGTATATTGGCACCTTCTTCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
* * *
505807 TAAGTCCAATGTAGCTGGCCTTGAATTAGCACATCGGCA----C--CTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
** * * * *
505850 TAAGTCCAACATAGCTAGCCTTGAATCAGCATGTTAGCACCTTTTCCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACC--TT-CTTCTT
* * *
505902 TAAGTTCAATGTAGCTGGCTTTGAATCAGCACATTG
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTG
505938 ACATCCTTTT
Statistics
Matches: 300, Mismatches: 41, Indels: 43
0.78 0.11 0.11
Matches are distributed among these distances:
43 101 0.34
44 3 0.01
45 1 0.00
46 15 0.05
48 3 0.01
49 145 0.48
50 1 0.00
52 31 0.10
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.32
Consensus pattern (49 bp):
TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
Found at i:505616 original size:21 final size:21
Alignment explanation
Indices: 505592--505659 Score: 50
Period size: 21 Copynumber: 3.2 Consensus size: 21
505582 ATGTAGCTGG
505592 CCTTGAATCAGCACATTGGCA
1 CCTTGAATCAGCACATTGGCA
* ** *
505613 CCTTCAAGTCCAATATCACTGG--
1 CCTTGAA-T-CAGCA-CATTGGCA
*
505635 CCTTGAATCAGCATATTGGCA
1 CCTTGAATCAGCACATTGGCA
505656 CCTT
1 CCTT
505660 CTTCTTTAAG
Statistics
Matches: 33, Mismatches: 9, Indels: 10
0.63 0.17 0.19
Matches are distributed among these distances:
19 4 0.12
20 3 0.09
21 11 0.33
22 7 0.21
23 3 0.09
24 5 0.15
ACGTcount: A:0.26, C:0.29, G:0.16, T:0.28
Consensus pattern (21 bp):
CCTTGAATCAGCACATTGGCA
Found at i:505687 original size:92 final size:92
Alignment explanation
Indices: 505520--505801 Score: 467
Period size: 92 Copynumber: 3.1 Consensus size: 92
505510 CGGTGGCAAC
* *
505520 CCTTCTAAGCCCAATAT-AGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAACTCCAAT
1 CCTTC-AAGTCCAATATCA-CTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAAT
505584 GTAGCTGGCCTTGAATCAGCACATTGGCA
64 GTAGCTGGCCTTGAATCAGCACATTGGCA
505613 CCTTCAAGTCCAATATCACTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGT
1 CCTTCAAGTCCAATATCACTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGT
505678 AGCTGGCCTTGAATCAGCACATTGGCA
66 AGCTGGCCTTGAATCAGCACATTGGCA
* * * *
505705 CCTTCAAGTCTAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTTCAATGT
1 CCTTCAAGTCCAATATCACTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGT
* *
505770 AGCTGGCCTTGAATCAGTATATTGGCA
66 AGCTGGCCTTGAATCAGCACATTGGCA
505797 CCTTC
1 CCTTC
505802 TTCTTTAAGT
Statistics
Matches: 180, Mismatches: 8, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
92 174 0.97
93 6 0.03
ACGTcount: A:0.24, C:0.27, G:0.17, T:0.32
Consensus pattern (92 bp):
CCTTCAAGTCCAATATCACTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGT
AGCTGGCCTTGAATCAGCACATTGGCA
Found at i:505784 original size:141 final size:141
Alignment explanation
Indices: 505525--505937 Score: 507
Period size: 141 Copynumber: 2.9 Consensus size: 141
505515 GCAACCCTTC
* * * * *
505525 TAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAACTCCAATGTAGCT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA-C--CTTC---AAGTCCAATATAGCT
* * *
505590 GGCCTTGAATCAGCACATTGGCACC-T--TC---AAGTCCAATATCA-CTGGCCTTGAATCAGCA
60 GGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTTCAATGT-AGCTGGCCTTGAATCAGCA
505648 TATTGGCACCTTCTTCTT
124 TATTGGCACCTTCTTCTT
* *
505666 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCAAGTCTAATATCGCTGGCCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCAAGTCCAATATAGCTGGCCTT
*
505731 GAATCAGCATATTGGCACCTTCATCTTTAAGTTCAATGTAGCTGGCCTTGAATCAGTATATTGGC
66 GAATCAGCATATTGGCACCTTCATCTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCATATTGGC
505796 ACCTTCTTCTT
131 ACCTTCTTCTT
* * * * *
505807 TAAGTCCAATGTAGCTGGCCTTGAATTAGCACATCGGCACCTTTAAGTCCAACATAGCTAGCCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCAAGTCCAATATAGCTGGCCTT
* * * *
505872 GAATCAGCATGTTAGCACCTTTTCCATCTTTAAGTTCAATGTAGCTGGCTTTGAATCAGCACATT
66 GAATCAGCATATTGGCACC--TT-CATCTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCATATT
505937 G
128 G
505938 ACATCCTTTT
Statistics
Matches: 239, Mismatches: 23, Indels: 17
0.86 0.08 0.06
Matches are distributed among these distances:
135 35 0.15
136 1 0.00
138 6 0.03
140 2 0.01
141 154 0.64
143 2 0.01
144 39 0.16
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.32
Consensus pattern (141 bp):
TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCAAGTCCAATATAGCTGGCCTT
GAATCAGCATATTGGCACCTTCATCTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCATATTGGC
ACCTTCTTCTT
Found at i:505933 original size:95 final size:92
Alignment explanation
Indices: 505755--505935 Score: 236
Period size: 92 Copynumber: 1.9 Consensus size: 92
505745 GCACCTTCAT
* ** * * * *
505755 CTTTAAGTTCAATGTAGCTGGCCTTGAATCAGTATATTGGCACCTTCTTCTTTAAGTCCAATGTA
1 CTTTAAGTCCAACATAGCTAGCCTTGAATCAGCATATTAGCACCTTCATCTTTAAGTCCAATGTA
*
505820 GCTGGCCTTGAATTAGCACATCGGCAC
66 GCTGGCCTTGAATCAGCACATCGGCAC
* *
505847 CTTTAAGTCCAACATAGCTAGCCTTGAATCAGCATGTTAGCACCTTTTCCATCTTTAAGTTCAAT
1 CTTTAAGTCCAACATAGCTAGCCTTGAATCAGCATATTAGCACC--TT-CATCTTTAAGTCCAAT
*
505912 GTAGCTGGCTTTGAATCAGCACAT
63 GTAGCTGGCCTTGAATCAGCACAT
505936 TGACATCCTT
Statistics
Matches: 75, Mismatches: 11, Indels: 3
0.84 0.12 0.03
Matches are distributed among these distances:
92 37 0.49
94 2 0.03
95 36 0.48
ACGTcount: A:0.25, C:0.23, G:0.18, T:0.34
Consensus pattern (92 bp):
CTTTAAGTCCAACATAGCTAGCCTTGAATCAGCATATTAGCACCTTCATCTTTAAGTCCAATGTA
GCTGGCCTTGAATCAGCACATCGGCAC
Found at i:506058 original size:67 final size:68
Alignment explanation
Indices: 505950--506076 Score: 184
Period size: 67 Copynumber: 1.9 Consensus size: 68
505940 ATCCTTTTTC
* * *
505950 TCATCTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTGGCATCTTTATCA-CTTTTCTCA
1 TCATCTTTAAGCCCAATATCGCTGGCCGTGAATCAACATATTGGCACCTTCATCATCTTTTCTCA
506014 TCT
66 TCT
* * * *
506017 TCATCTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATATTGGCACCTTCATCATCTTT
1 TCATCTTTAAGCCCAATATCGCTGGCCGTGAATCAACATATTGGCACCTTCATCATCTTT
506077 AAAACCCAAT
Statistics
Matches: 52, Mismatches: 7, Indels: 1
0.87 0.12 0.02
Matches are distributed among these distances:
67 48 0.92
68 4 0.08
ACGTcount: A:0.24, C:0.25, G:0.13, T:0.39
Consensus pattern (68 bp):
TCATCTTTAAGCCCAATATCGCTGGCCGTGAATCAACATATTGGCACCTTCATCATCTTTTCTCA
TCT
Found at i:506728 original size:36 final size:34
Alignment explanation
Indices: 506649--506927 Score: 192
Period size: 36 Copynumber: 8.4 Consensus size: 34
506639 TGGGGATGAA
* * *
506649 TTTT-AAGTCCACGACTCCGTGGCACC---TTCT
1 TTTTAAAGCCCACAACTCCGTGGCACCTTTTTCC
*
506679 TTTTAAAGCCCACAACTCCGAGGCACTCTTTTTCCC
1 TTTTAAAGCCCACAACTCCGTGGCAC-CTTTTT-CC
* * *
506715 TTTTAAAGTCCACAACCCCGTGGCACCTTGTTCC
1 TTTTAAAGCCCACAACTCCGTGGCACCTTTTTCC
* *
506749 TTTT-AAGTCCACGACTCCGTGGCACC----TCC
1 TTTTAAAGCCCACAACTCCGTGGCACCTTTTTCC
* * * * **
506778 TTTCAAAGTCCGCGACTCTATGGCACC---TT-C
1 TTTTAAAGCCCACAACTCCGTGGCACCTTTTTCC
506808 TTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCC
1 TTTT-AAAGCCCACAACTCCGTGGCAC-CTTTTT-CC
506845 TTTTAAAGCCCACAACTCCGTGGCACCTTATTT--
1 TTTTAAAGCCCACAACTCCGTGGCACCTT-TTTCC
* * * * **
506878 TTTTTAAGTCCACAACTTCGTGGCATCTTTCACCC
1 TTTTAAAGCCCACAACTCCGTGGCACCTTT-TTCC
506913 TTTCTAAAGCCCACA
1 TTT-TAAAGCCCACA
506928 CAAGTCGGTG
Statistics
Matches: 201, Mismatches: 28, Indels: 34
0.76 0.11 0.13
Matches are distributed among these distances:
29 6 0.03
30 27 0.13
31 36 0.18
32 3 0.01
33 45 0.22
34 6 0.03
35 15 0.07
36 58 0.29
37 5 0.02
ACGTcount: A:0.21, C:0.34, G:0.13, T:0.32
Consensus pattern (34 bp):
TTTTAAAGCCCACAACTCCGTGGCACCTTTTTCC
Found at i:506886 original size:130 final size:130
Alignment explanation
Indices: 506653--506902 Score: 392
Period size: 130 Copynumber: 1.9 Consensus size: 130
506643 GATGAATTTT
* *
506653 AAGTCCACGACTCCGTGGCACCTTCTTTTTAAAGCCCACAACTCCGAGGCACTCTTTTTCCCTTT
1 AAGTCCACGACTCCATGGCACCTTCTTTTCAAAGCCCACAACTCCGAGGCACTCTTTTTCCCTTT
* * *
506718 TAAAGTCCACAACCCCGTGGCACCTTGTTCCTTTTAAGTCCACGACTCCGTGGCACCTCCTTTCA
66 TAAAGCCCACAACCCCGTGGCACCTTATTCCTTTTAAGTCCACAACTCCGTGGCACCTCCTTTCA
* * *
506783 AAGTCCGCGACTCTATGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTT
1 AAGTCCACGACTCCATGGCACCTTCTTTTCAAAGCCCACAACTCCGAGGCACTCTTTTTCCCTTT
* ** *
506848 TAAAGCCCACAACTCCGTGGCACCTTATTTTTTTTAAGTCCACAACTTCGTGGCA
66 TAAAGCCCACAACCCCGTGGCACCTTATTCCTTTTAAGTCCACAACTCCGTGGCA
506903 TCTTTCACCC
Statistics
Matches: 108, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
130 108 1.00
ACGTcount: A:0.21, C:0.34, G:0.14, T:0.30
Consensus pattern (130 bp):
AAGTCCACGACTCCATGGCACCTTCTTTTCAAAGCCCACAACTCCGAGGCACTCTTTTTCCCTTT
TAAAGCCCACAACCCCGTGGCACCTTATTCCTTTTAAGTCCACAACTCCGTGGCACCTCCTTTCA
Found at i:506901 original size:69 final size:67
Alignment explanation
Indices: 506649--506927 Score: 268
Period size: 69 Copynumber: 4.2 Consensus size: 67
506639 TGGGGATGAA
* *
506649 TTTT-AAGTCCACGACTCCGTGGCACCTTCTTTTTAAAGCCCACAACTCCGAGGCACTCTTTTTC
1 TTTTAAAGTCCACAACTCCGTGGCACCTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTC
506713 CC
66 CC
* * * * *
506715 TTTTAAAGTCCACAACCCCGTGGCACCTTGTTCCTTTTAAGTCCACGACTCCGTGGCAC-C----
1 TTTTAAAGTCCACAACTCCGTGGCACCTTCTT--TTTAAAGCCCACAACTCCGTGGCACTCTTTT
506775 T-CC
64 TCCC
* * * ** *
506778 TTTCAAAGTCCGCGACTCTATGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTC
1 TTTTAAAGTCCACAACTCCGTGGCACCTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTC
506843 CC
66 CC
* * * * * *
506845 TTTTAAAGCCCACAACTCCGTGGCACCTTATTTTTTTTAAGTCCACAACTTCGTGGCA-TCTTTC
1 TTTTAAAGTCCACAACTCCGTGGCACC-T-TCTTTTTAAAGCCCACAACTCCGTGGCACTCTTTT
*
506909 ACCC
64 TCCC
*
506913 TTTCTAAAGCCCACA
1 TTT-TAAAGTCCACA
506928 CAAGTCGGTG
Statistics
Matches: 170, Mismatches: 31, Indels: 21
0.77 0.14 0.09
Matches are distributed among these distances:
61 21 0.12
62 1 0.01
63 27 0.16
64 1 0.01
66 5 0.03
67 47 0.28
68 13 0.08
69 55 0.32
ACGTcount: A:0.21, C:0.34, G:0.13, T:0.32
Consensus pattern (67 bp):
TTTTAAAGTCCACAACTCCGTGGCACCTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTC
CC
Found at i:506957 original size:33 final size:33
Alignment explanation
Indices: 506911--507080 Score: 227
Period size: 33 Copynumber: 5.2 Consensus size: 33
506901 CATCTTTCAC
506911 CCTT-TCTAAAGCCCACACAAGTCGGTGGCAAA
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
*
506943 CGTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
* ** *
506976 CCTTCCCTAAAGCCCACACAAGTTAGTGGCAAC
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
** *
507009 CCCACTCTAAAGCCCACACAAGTTGGTGGC-AA
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
* *
507041 CCATTCTCTAAAGCCCACGCAAGTCGGTGGCAAC
1 CC-TTCTCTAAAGCCCACACAAGTCGGTGGCAAA
507075 CCTTCT
1 CCTTCT
507081 AAGCCCAATA
Statistics
Matches: 119, Mismatches: 16, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
32 6 0.05
33 110 0.92
34 3 0.03
ACGTcount: A:0.29, C:0.34, G:0.18, T:0.19
Consensus pattern (33 bp):
CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
Found at i:507144 original size:49 final size:49
Alignment explanation
Indices: 507080--507627 Score: 591
Period size: 49 Copynumber: 11.7 Consensus size: 49
507070 GCAACCCTTC
* *
507080 TAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCTTCTT
* * * *
507129 TAACTCCAATGTAGCTAGCCTTCAATCAGCACATTGGCA-C--CTTC--
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCTTCTT
* *
507173 -AAGTCTAATATCGCTGGCCTTGAATCAGCACATTGGCA----C--CTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCTTCTT
* *
507215 TAAGTCCAATATAACTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCTTCTT
* *
507264 TAAGTCTAATGTAGCTGGCCTTGAATCAGCACATTGGCA-C--CTTC--
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCTTCTT
* *
507308 -AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCTTCTT
*
507356 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA-C--CTTC--
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCTTCTT
* * *
507400 -AAGTCTAATATCGCTGGCCTTGAATCAGCATC-TTGGCACCTTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCA-CATTGGCACCTTCTTCTT
* *
507448 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCTTCTT
* *
507497 TAAGTCCAATGTAGCTGGCCTTGAATTAGCACATTGGCA----C--CTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCTTCTT
* * *
507540 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACATTTTCCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCAC--CTT-CTTCTT
* * *
507592 TAAGTTCAATGTAGCTGGCTTTGAATCAGCACATTG
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTG
507628 ACATCCTTTT
Statistics
Matches: 422, Mismatches: 45, Indels: 61
0.80 0.09 0.12
Matches are distributed among these distances:
40 1 0.00
42 1 0.00
43 172 0.41
44 3 0.01
45 1 0.00
46 19 0.05
47 1 0.00
48 3 0.01
49 185 0.44
50 1 0.00
52 35 0.08
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.32
Consensus pattern (49 bp):
TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCTTCTT
Found at i:507207 original size:43 final size:43
Alignment explanation
Indices: 507133--507579 Score: 473
Period size: 43 Copynumber: 9.8 Consensus size: 43
507123 CTTCTTTAAC
* * *
507133 TCCAATGTAGCTAGCCTTCAATCAGCACATTGGCACCTTCAAG
1 TCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCAAG
* * *
507176 TCTAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTTAAG
1 TCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCAAG
* *
507219 TCCAATATAACTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAG
1 TCCAATATAGCTGGCCTTGAATCAGCACATTGGCA-C--CTTC---AAG
* *
507268 TCTAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCAAG
1 TCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCAAG
* *
507311 TCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAG
1 TCCAATATAGCTGGCCTTGAATCAGCACATTGGCA-C--CTTC---AAG
*
507360 TCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCAAG
1 TCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCAAG
* *
507403 TCTAATATCGCTGGCCTTGAATCAGCATC-TTGGCACCTTCATCTTTAAG
1 TCCAATATAGCTGGCCTTGAATCAGCA-CATTGGCACC-T--TC---AAG
* *
507452 TCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAG
1 TCCAATATAGCTGGCCTTGAATCAGCACATTGGCA-C--CTTC---AAG
* * *
507501 TCCAATGTAGCTGGCCTTGAATTAGCACATTGGCACCTTTAAG
1 TCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCAAG
*
507544 TCCAATATAGCTGGCCTTGAATCAGCATATTGGCAC
1 TCCAATATAGCTGGCCTTGAATCAGCACATTGGCAC
507580 ATTTTCCATC
Statistics
Matches: 346, Mismatches: 35, Indels: 46
0.81 0.08 0.11
Matches are distributed among these distances:
43 173 0.50
44 4 0.01
46 20 0.06
48 3 0.01
49 143 0.41
50 1 0.00
51 1 0.00
52 1 0.00
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.31
Consensus pattern (43 bp):
TCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCAAG
Found at i:507269 original size:92 final size:92
Alignment explanation
Indices: 507185--507579 Score: 568
Period size: 92 Copynumber: 4.3 Consensus size: 92
507175 GTCTAATATC
* *
507185 GCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATAACTGGCCTTGAATCAGCATATT
1 GCTGGCCTTGAATCAGCACATTGGCACCTTCAAGTCCAATATAGCTGGCCTTGAATCAGCATATT
*
507250 GGCACCTTCTTCTTTAAGTCTAATGTA
66 GGCACCTTCTTCTTTAAGTCCAATGTA
*
507277 GCTGGCCTTGAATCAGCACATTGGCACCTTCAAGTCCAATATCGCTGGCCTTGAATCAGCATATT
1 GCTGGCCTTGAATCAGCACATTGGCACCTTCAAGTCCAATATAGCTGGCCTTGAATCAGCATATT
507342 GGCACCTTCTTCTTTAAGTCCAATGTA
66 GGCACCTTCTTCTTTAAGTCCAATGTA
* * *
507369 GCTGGCCTTGAATCAGCACATTGGCACCTTCAAGTCTAATATCGCTGGCCTTGAATCAGCATCTT
1 GCTGGCCTTGAATCAGCACATTGGCACCTTCAAGTCCAATATAGCTGGCCTTGAATCAGCATATT
*
507434 GGCACCTTCATCTTTAAGTCCAATGTA
66 GGCACCTTCTTCTTTAAGTCCAATGTA
* * *
507461 GCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGTAGCTGGCCTTGAATTAG
1 GCTGGCCTTGAATCAGCACATTGGCA-C--CTTC---AAGTCCAATATAGCTGGCCTTGAATCAG
* *
507526 CACATTGGCA----C--CTTTAAGTCCAATATA
60 CATATTGGCACCTTCTTCTTTAAGTCCAATGTA
*
507553 GCTGGCCTTGAATCAGCATATTGGCAC
1 GCTGGCCTTGAATCAGCACATTGGCAC
507580 ATTTTCCATC
Statistics
Matches: 282, Mismatches: 15, Indels: 13
0.91 0.05 0.04
Matches are distributed among these distances:
91 1 0.00
92 243 0.86
93 1 0.00
94 1 0.00
95 4 0.01
98 32 0.11
ACGTcount: A:0.25, C:0.26, G:0.19, T:0.31
Consensus pattern (92 bp):
GCTGGCCTTGAATCAGCACATTGGCACCTTCAAGTCCAATATAGCTGGCCTTGAATCAGCATATT
GGCACCTTCTTCTTTAAGTCCAATGTA
Found at i:507419 original size:184 final size:184
Alignment explanation
Indices: 507080--507579 Score: 667
Period size: 184 Copynumber: 2.7 Consensus size: 184
507070 GCAACCCTTC
* * *
507080 TAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAACTCCAATGTAGCT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACC-TCTTC--TAAGTCCAATGTAGCT
* * * *
507145 AGCCTTCAATCAGCACATTGGCACCTTC---AAGTCTAATATCGCTGGCCTTGAATCAGCACATT
63 GGCCTTGAATCAGCACATTGGCACCTTCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATT
* *
507207 GGCACCTTTAAGTCCAATATAACTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
128 GGCACCTTCAAGTCCAATATAACTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* * * *
507264 TAAGTCTAATGTAGCTGGCCTTGAATCAGCACATTGGCA-C-CTTC-AAGTCCAATATCGCTGGC
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTCTTCTAAGTCCAATGTAGCTGGC
* *
507326 CTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATT
66 CTTGAATCAGCACATTGGCA-C--CTTCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATT
* ** *
507391 GGCACCTTCAAGTCTAATATCGCTGGCCTTGAATCAGCATCTTGGCACCTTCATCTT
128 GGCACCTTCAAGTCCAATATAACTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
507448 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGTAGCT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACC-TCTTC--TAAGTCCAATGTAGCT
* *
507513 GGCCTTGAATTAGCACATTGGCA-C--CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATT
63 GGCCTTGAATCAGCACATTGGCACCTTCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATT
507575 GGCAC
128 GGCAC
507580 ATTTTCCATC
Statistics
Matches: 277, Mismatches: 27, Indels: 24
0.84 0.08 0.07
Matches are distributed among these distances:
178 32 0.12
179 1 0.00
181 8 0.03
183 1 0.00
184 195 0.70
185 1 0.00
186 1 0.00
187 4 0.01
190 34 0.12
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.31
Consensus pattern (184 bp):
TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTCTTCTAAGTCCAATGTAGCTGGC
CTTGAATCAGCACATTGGCACCTTCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGC
ACCTTCAAGTCCAATATAACTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
Found at i:507468 original size:141 final size:141
Alignment explanation
Indices: 507185--507627 Score: 561
Period size: 141 Copynumber: 3.2 Consensus size: 141
507175 GTCTAATATC
* *
507185 GCTGGCCTTGAATCAGCACATTGGCA----C--CTTTAAGTCCAATATAACTGGCCTTGAATCAG
1 GCTGGCCTTGAATCAGCACATTGGCACCTTCTTCTTTAAGTCCAATGTAGCTGGCCTTGAATCAG
* *
507244 CATATTGGCACCTTCTTCTTTAAGTCTAATGTAGCTGGCCTTGAATCAGCA-CATTGGCACC-T-
66 CACATTGGCA-C--CTTC---AAGTCTAATATAGCTGGCCTTGAATCAGCATC-TTGGCACCTTC
* *
507306 -TC---AAGTCCAATATC
124 ATCTTTAAGTCCAATGTA
*
507320 GCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGTAGCTGGCCTTGAATCAG
1 GCTGGCCTTGAATCAGCACATTGGCACCTTCTTCTTTAAGTCCAATGTAGCTGGCCTTGAATCAG
*
507385 CACATTGGCACCTTCAAGTCTAATATCGCTGGCCTTGAATCAGCATCTTGGCACCTTCATCTTTA
66 CACATTGGCACCTTCAAGTCTAATATAGCTGGCCTTGAATCAGCATCTTGGCACCTTCATCTTTA
507450 AGTCCAATGTA
131 AGTCCAATGTA
* *
507461 GCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGTAGCTGGCCTTGAATTAG
1 GCTGGCCTTGAATCAGCACATTGGCACCTTCTTCTTTAAGTCCAATGTAGCTGGCCTTGAATCAG
* * * *
507526 CACATTGGCACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACATTTTCCATCT
66 CACATTGGCACCTTCAAGTCTAATATAGCTGGCCTTGAATCAGCATCTTGGCAC--CTT-CATCT
*
507591 TTAAGTTCAATGTA
128 TTAAGTCCAATGTA
*
507605 GCTGGCTTTGAATCAGCACATTG
1 GCTGGCCTTGAATCAGCACATTG
507628 ACATCCTTTT
Statistics
Matches: 275, Mismatches: 17, Indels: 23
0.87 0.05 0.07
Matches are distributed among these distances:
135 61 0.22
136 2 0.01
138 6 0.02
139 1 0.00
140 1 0.00
141 163 0.59
143 2 0.01
144 39 0.14
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.32
Consensus pattern (141 bp):
GCTGGCCTTGAATCAGCACATTGGCACCTTCTTCTTTAAGTCCAATGTAGCTGGCCTTGAATCAG
CACATTGGCACCTTCAAGTCTAATATAGCTGGCCTTGAATCAGCATCTTGGCACCTTCATCTTTA
AGTCCAATGTA
Found at i:507607 original size:52 final size:54
Alignment explanation
Indices: 507537--507823 Score: 201
Period size: 52 Copynumber: 5.1 Consensus size: 54
507527 ACATTGGCAC
507537 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-CATTTTC-CAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCATTTTCTCAT
* * * * * *
507589 CTTTAAGTTCAATGTAGCTGGCTTTGAATCAGCACATTGACATCCTTTTTCTCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-CCATTTTCTCAT
* * * * *
507644 CTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTGGCATCTTTATCACTTTTCTCATCTTC
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-C-----CA---TT-T--TC-TC
507709 AT
53 AT
*
507711 CTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATATTGGCACC---TTCATCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCATTTTC-TCAT
** * * * * *
507763 CTTTAAAACCCAATGTTGTTGGCCTTGAATCAGCACATTGGCA--TTTTTCTCAT
1 CTTT-AAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCATTTTCTCAT
*
507816 CTTCAAGT
1 CTTTAAGT
507824 TTAATGTCGC
Statistics
Matches: 185, Mismatches: 31, Indels: 38
0.73 0.12 0.15
Matches are distributed among these distances:
52 49 0.26
53 40 0.22
54 10 0.05
55 37 0.20
60 1 0.01
61 1 0.01
63 2 0.01
64 1 0.01
66 3 0.02
67 41 0.22
ACGTcount: A:0.25, C:0.24, G:0.14, T:0.37
Consensus pattern (54 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCATTTTCTCAT
Found at i:507748 original size:67 final size:68
Alignment explanation
Indices: 507640--507766 Score: 184
Period size: 67 Copynumber: 1.9 Consensus size: 68
507630 ATCCTTTTTC
* * *
507640 TCATCTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTGGCATCTTTATCA-CTTTTCTCA
1 TCATCTTTAAGCCCAATATCGCTGGCCGTGAATCAACATATTGGCACCTTCATCATCTTTTCTCA
507704 TCT
66 TCT
* * * *
507707 TCATCTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATATTGGCACCTTCATCATCTTT
1 TCATCTTTAAGCCCAATATCGCTGGCCGTGAATCAACATATTGGCACCTTCATCATCTTT
507767 AAAACCCAAT
Statistics
Matches: 52, Mismatches: 7, Indels: 1
0.87 0.12 0.02
Matches are distributed among these distances:
67 48 0.92
68 4 0.08
ACGTcount: A:0.24, C:0.25, G:0.13, T:0.39
Consensus pattern (68 bp):
TCATCTTTAAGCCCAATATCGCTGGCCGTGAATCAACATATTGGCACCTTCATCATCTTTTCTCA
TCT
Found at i:507884 original size:227 final size:228
Alignment explanation
Indices: 507555--507981 Score: 601
Period size: 227 Copynumber: 1.9 Consensus size: 228
507545 CCAATATAGC
* * * **
507555 TGGCCTTGAATCAGCATATTGGCACATTTTCCATCTTTAAGTTCAATGTAGCTGGCTTTGAATCA
1 TGGCCTTGAATCAGCACATTGGCACATTTTCCATCTTCAAGTTCAATGTAGCTGACCGTGAATCA
*
507620 GCACATTGACATCCTTTTTCTCATCTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTGG-
66 CCACATTGACATCCTTTTTCTCATCTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTGGT
** * * *
507684 CATCTTTATCACTTTTC-TCATCTTCATCTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATAT
131 CAT-TTTATCACTCGTCATCATCATCATCTTTAAGTCCAATATTGCAGGCCTTGAATCAGCATAG
507748 TGGCACCTTCATCATCTTTAAAACCCAATGTTGT
195 TGGCACCTTCATCATCTTTAAAACCCAATGTTGT
* * *
507782 TGGCCTTGAATCAGCACATTGGCA-TTTTTCTCATCTTCAAGTTTAATGTCGCTGACCGTGAATC
1 TGGCCTTGAATCAGCACATTGGCACATTTTC-CATCTTCAAGTTCAATGTAGCTGACCGTGAATC
* *
507846 ACCACATTGACATCTTTTTTCTCATCTTTGAA-CCCAATATCGTTGGCCGTGAATCAACGTATTG
65 ACCACATTGACATCCTTTTTCTCATCTTT-AAGCCCAATATCGTTGGCCGTGAATCAACATATTG
* * * * * *
507910 GTCCTTTTATCACTCGTCATCTTCATCATCTTTAAGTCTAGTGTTGCAGGCCTTGAATCTGCATA
129 GTCATTTTATCACTCGTCATCATCATCATCTTTAAGTCCAATATTGCAGGCCTTGAATCAGCATA
507975 GTGGCAC
194 GTGGCAC
507982 ATTGCAATGA
Statistics
Matches: 174, Mismatches: 22, Indels: 7
0.86 0.11 0.03
Matches are distributed among these distances:
226 5 0.03
227 120 0.69
228 49 0.28
ACGTcount: A:0.23, C:0.24, G:0.15, T:0.37
Consensus pattern (228 bp):
TGGCCTTGAATCAGCACATTGGCACATTTTCCATCTTCAAGTTCAATGTAGCTGACCGTGAATCA
CCACATTGACATCCTTTTTCTCATCTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTGGT
CATTTTATCACTCGTCATCATCATCATCTTTAAGTCCAATATTGCAGGCCTTGAATCAGCATAGT
GGCACCTTCATCATCTTTAAAACCCAATGTTGT
Found at i:508467 original size:31 final size:31
Alignment explanation
Indices: 508325--508575 Score: 144
Period size: 31 Copynumber: 7.6 Consensus size: 31
508315 GATGAATTTT
* * *
508325 AAGTCCACGACTCCGTGGCACCTTCTTTTTA
1 AAGTCCACAACTCCGTGGCACCTTCCTTTCA
* * * * *
508356 AAGCCCGCAACTGCGAGGCACTCTTTTTCCCTTTTA
1 AAGTCCACAACTCCGTGGCAC-C---TT-CCTTTCA
* *
508392 AAGTCCACAACCCCGTGGCACCTTGTTCCTTT-T
1 AAGTCCACAACTCCGTGGCACC---TTCCTTTCA
*
508425 AAGTCCACGACTCCGTGGCACCTTCCTTTCA
1 AAGTCCACAACTCCGTGGCACCTTCCTTTCA
* * * * *
508456 AAGTCCGCGACTCTGTGGCACCATCTTTTCA
1 AAGTCCACAACTCCGTGGCACCTTCCTTTCA
* * *
508487 AAGCCCACAACTCCGTGACACTCTTTTTCCCTTTTA
1 AAGTCCACAACTCCGTGGCAC-C---TT-CCTTTCA
* * **
508523 AAGCCCACAACTCCGTGGCACCTTGTTCTTTTT
1 AAGTCCACAACTCCGTGGCACC-T-TCCTTTCA
*
508556 AAGTCCACAACTTCGTGGCA
1 AAGTCCACAACTCCGTGGCA
508576 TCTTTCACCC
Statistics
Matches: 175, Mismatches: 33, Indels: 22
0.76 0.14 0.10
Matches are distributed among these distances:
30 7 0.04
31 59 0.34
32 2 0.01
33 45 0.26
34 6 0.03
35 9 0.05
36 47 0.27
ACGTcount: A:0.20, C:0.34, G:0.16, T:0.30
Consensus pattern (31 bp):
AAGTCCACAACTCCGTGGCACCTTCCTTTCA
Found at i:508559 original size:131 final size:131
Alignment explanation
Indices: 508325--508575 Score: 385
Period size: 131 Copynumber: 1.9 Consensus size: 131
508315 GATGAATTTT
* * * * *
508325 AAGTCCACGACTCCGTGGCACCTTCTTTTTAAAGCCCGCAACTGCGAGGCACTCTTTTTCCCTTT
1 AAGTCCACGACTCCGTGGCACCATCTTTTCAAAGCCCACAACTCCGAGACACTCTTTTTCCCTTT
* *
508390 TAAAGTCCACAACCCCGTGGCACCTTGTTCCTTTTAAGTCCACGACTCCGTGGCACCTTCCTTTC
66 TAAAGCCCACAACCCCGTGGCACCTTGTTCCTTTTAAGTCCACAACTCCGTGGCACCTTCCTTTC
508455 A
131 A
* * *
508456 AAGTCCGCGACTCTGTGGCACCATCTTTTCAAAGCCCACAACTCCGTGACACTCTTTTTCCCTTT
1 AAGTCCACGACTCCGTGGCACCATCTTTTCAAAGCCCACAACTCCGAGACACTCTTTTTCCCTTT
* * *
508521 TAAAGCCCACAACTCCGTGGCACCTTGTTCTTTTTAAGTCCACAACTTCGTGGCA
66 TAAAGCCCACAACCCCGTGGCACCTTGTTCCTTTTAAGTCCACAACTCCGTGGCA
508576 TCTTTCACCC
Statistics
Matches: 107, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
131 107 1.00
ACGTcount: A:0.20, C:0.34, G:0.16, T:0.30
Consensus pattern (131 bp):
AAGTCCACGACTCCGTGGCACCATCTTTTCAAAGCCCACAACTCCGAGACACTCTTTTTCCCTTT
TAAAGCCCACAACCCCGTGGCACCTTGTTCCTTTTAAGTCCACAACTCCGTGGCACCTTCCTTTC
A
Found at i:508631 original size:33 final size:33
Alignment explanation
Indices: 508584--508720 Score: 170
Period size: 33 Copynumber: 4.2 Consensus size: 33
508574 CATCTTTCAC
508584 CCTT-TCTAAAGCCCACACAAGTCGGTGGCAAA
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
* ** *
508616 CCTTCCCTAAAGCCCACACAAGTTAGTGGCAAC
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
** *
508649 CCCACTCTAAAGCCCACACAAGTTGGTGGC-AA
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
* *
508681 CCATTCTCTAAAGCCCACGCAAGTCGGTGGCAAC
1 CC-TTCTCTAAAGCCCACACAAGTCGGTGGCAAA
508715 CCTTCT
1 CCTTCT
508721 AAGCCCAATA
Statistics
Matches: 88, Mismatches: 14, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
32 7 0.08
33 78 0.89
34 3 0.03
ACGTcount: A:0.28, C:0.35, G:0.18, T:0.19
Consensus pattern (33 bp):
CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
Found at i:508677 original size:66 final size:66
Alignment explanation
Indices: 508588--508716 Score: 197
Period size: 66 Copynumber: 2.0 Consensus size: 66
508578 TTTCACCCTT
*
508588 TCTAAAGCCCACACAAGTCGGTGGCAAACC-TTCCCTAAAGCCCACACAAGTTAGTGGCAACCCC
1 TCTAAAGCCCACACAAGTCGGTGGC-AACCATTCCCTAAAGCCCACACAAGTCAGTGGCAACCCC
508652 AC
65 AC
* * * *
508654 TCTAAAGCCCACACAAGTTGGTGGCAACCATTCTCTAAAGCCCACGCAAGTCGGTGGCAACCC
1 TCTAAAGCCCACACAAGTCGGTGGCAACCATTCCCTAAAGCCCACACAAGTCAGTGGCAACCC
508717 TTCTAAGCCC
Statistics
Matches: 57, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
65 4 0.07
66 53 0.93
ACGTcount: A:0.30, C:0.35, G:0.19, T:0.16
Consensus pattern (66 bp):
TCTAAAGCCCACACAAGTCGGTGGCAACCATTCCCTAAAGCCCACACAAGTCAGTGGCAACCCCA
C
Found at i:508778 original size:49 final size:49
Alignment explanation
Indices: 508720--509175 Score: 447
Period size: 49 Copynumber: 9.7 Consensus size: 49
508710 GCAACCCTTC
* *
508720 TAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCCTCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCCTCTT
* *
508769 TAAGTCCAATGTAGCTAGCCTTGAATCAGCACATTGG---C-T-C-CTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCCTCTT
* * *
508812 CAAGTCTAATATCGCTGGCCTTGAATCAGCACATTGGCA-----C-CTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCCTCTT
* * * *
508855 TAAGTCCAATATAACTGGGCTTGAATCAGCATATTGGCACCTTCTTCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCCTCTT
* * * *
508904 TAAGTCTAATGTACCTGGCCTTGGATCAGCACATTGGCACC-T--TC--
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCCTCTT
* * *
508948 -AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCCTCTT
* * *
508996 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCCTCTT
* * *
509045 TAAGTCCAATGTAGCTGGCCTTAAATTAGCACATTGGCA-----C-CTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCCTCTT
*
509088 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACC--TTCC-TCTT
* ** * *
509140 TAAGTTCAACGTAGCTGGCTTTAAATCAGCACATTG
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTG
509176 ACATCCTTTT
Statistics
Matches: 339, Mismatches: 45, Indels: 43
0.79 0.11 0.10
Matches are distributed among these distances:
43 144 0.42
44 2 0.01
45 1 0.00
46 5 0.01
48 1 0.00
49 152 0.45
50 1 0.00
52 33 0.10
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.32
Consensus pattern (49 bp):
TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCCTCTT
Found at i:508834 original size:43 final size:43
Alignment explanation
Indices: 508766--509131 Score: 372
Period size: 43 Copynumber: 8.1 Consensus size: 43
508756 GCACCTTCCT
* * *
508766 CTTTAAGTCCAATGTAGCTAGCCTTGAATCAGCACATTGGCTC
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCAC
* * *
508809 CTTCAAGTCTAATATCGCTGGCCTTGAATCAGCACATTGGCAC
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCAC
* * *
508852 CTTTAAGTCCAATATAACTGGGCTTGAATCAGCATATTGGCACCTTC
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCA----C
* * * *
508899 TTCTTTAAGTCTAATGTACCTGGCCTTGGATCAGCACATTGGCAC
1 --CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCAC
* * *
508944 CTTCAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTC
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCA----C
* *
508991 ATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTC
1 --CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCA----C
* * *
509040 TTCTTTAAGTCCAATGTAGCTGGCCTTAAATTAGCACATTGGCAC
1 --CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCAC
*
509085 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCAC
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCAC
509128 CTTT
1 CTTT
509132 TCCATCTTTA
Statistics
Matches: 275, Mismatches: 36, Indels: 24
0.82 0.11 0.07
Matches are distributed among these distances:
43 151 0.55
45 2 0.01
47 2 0.01
49 120 0.44
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.32
Consensus pattern (43 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCAC
Found at i:508909 original size:92 final size:91
Alignment explanation
Indices: 508766--509131 Score: 401
Period size: 92 Copynumber: 4.0 Consensus size: 91
508756 GCACCTTCCT
* * * * * *
508766 CTTTAAGTCCAATGTAGCTAGCCTTGAATCAGCACATTGG---C-TC-CTTCAAGTCTAATATCG
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTCTTTAAGTCCAATATAG
508826 CTGGCCTTGAATCAGCACATTGGCAC
66 CTGGCCTTGAATCAGCACATTGGCAC
* * * *
508852 CTTTAAGTCCAATATAACTGGGCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCTAATGTA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTC-TCTTTAAGTCCAATATA
* *
508917 CCTGGCCTTGGATCAGCACATTGGCAC
65 GCTGGCCTTGAATCAGCACATTGGCAC
* * *
508944 CTTCAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTC-TCTTTAAGTCCAATATA
*
509009 GCTGGCCTTGAATCAGCATATTGGCACCTTC
65 GCTGGCCTTGAATCAGCACATTGGCA----C
* * * *
509040 TTCTTTAAGTCCAATGTAGCTGGCCTTAAATTAGCACATTGGCA----C-CTTTAAGTCCAATAT
1 --CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTCTTTAAGTCCAATAT
*
509100 AGCTGGCCTTGAATCAGCATATTGGCAC
64 AGCTGGCCTTGAATCAGCACATTGGCAC
509128 CTTT
1 CTTT
509132 TCCATCTTTA
Statistics
Matches: 242, Mismatches: 26, Indels: 24
0.83 0.09 0.08
Matches are distributed among these distances:
86 39 0.16
88 1 0.00
89 1 0.00
90 2 0.01
92 161 0.67
94 1 0.00
96 1 0.00
98 36 0.15
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.32
Consensus pattern (91 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTCTTTAAGTCCAATATAG
CTGGCCTTGAATCAGCACATTGGCAC
Found at i:509167 original size:52 final size:55
Alignment explanation
Indices: 509085--509203 Score: 145
Period size: 52 Copynumber: 2.2 Consensus size: 55
509075 ACATTGGCAC
* * * *
509085 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-CC-TTTTC-CAT
1 CTTTAAGTCCAACATAGCTGGCCTTAAATCAGCACATTGACATCCTTTTTCTCAT
* * *
509137 CTTTAAGTTCAACGTAGCTGGCTTTAAATCAGCACATTGACATCCTTTTTCTCAT
1 CTTTAAGTCCAACATAGCTGGCCTTAAATCAGCACATTGACATCCTTTTTCTCAT
*
509192 CTTTAAGCCCAA
1 CTTTAAGTCCAA
509204 TATCGTTGGC
Statistics
Matches: 55, Mismatches: 9, Indels: 3
0.82 0.13 0.04
Matches are distributed among these distances:
52 35 0.64
53 2 0.04
54 5 0.09
55 13 0.24
ACGTcount: A:0.26, C:0.25, G:0.13, T:0.35
Consensus pattern (55 bp):
CTTTAAGTCCAACATAGCTGGCCTTAAATCAGCACATTGACATCCTTTTTCTCAT
Found at i:509444 original size:55 final size:52
Alignment explanation
Indices: 509307--509449 Score: 142
Period size: 55 Copynumber: 2.7 Consensus size: 52
509297 GGCACCTTCA
* * *
509307 TCATCTTTAAAACCCAATGTTGTTGGCCTTGAATCAGCACATTGGCATTTTTC
1 TCATCTTT-AAACCCAATGTCGTTGGCCGTGAATCAGCACATTGACATTTTTC
** ** * * *
509360 TCATCTTCCAGTCTAATGTCGCTGACCGTGAATCAGCACATTGACATCCTTTTTC
1 TCATCTTTAAACCCAATGTCGTTGGCCGTGAATCAGCACATTGACA---TTTTTC
* *
509415 TCATCTTTGAACCCAATATCGTTGGCCGTGAATCA
1 TCATCTTTAAACCCAATGTCGTTGGCCGTGAATCA
509450 ACGTATTGGT
Statistics
Matches: 69, Mismatches: 18, Indels: 4
0.76 0.20 0.04
Matches are distributed among these distances:
52 29 0.42
53 7 0.10
55 33 0.48
ACGTcount: A:0.24, C:0.26, G:0.15, T:0.35
Consensus pattern (52 bp):
TCATCTTTAAACCCAATGTCGTTGGCCGTGAATCAGCACATTGACATTTTTC
Found at i:509750 original size:31 final size:31
Alignment explanation
Indices: 509710--509927 Score: 150
Period size: 31 Copynumber: 6.6 Consensus size: 31
509700 CATTTTAAGT
* *
509710 CCACGACTCCGTGGCACCTTCTTTTCAAAAC
1 CCACAACTCCGTGGCACCTTCTTTTCAAAGC
* *
509741 CCACAACTCCGTGGCACTCTTTCTCCCTTTTAAAGT
1 CCACAACTCCGTGGCAC-C-TTCT---TTTCAAAGC
* * * ** *
509777 CCACAACCCCATGGCACCTTGTTCCTTTTAAGT
1 CCACAACTCCGTGGCACCTTCTT--TTCAAAGC
* * *
509810 CCACGACTCCGTGGCACCTTCCTTTCAAAGT
1 CCACAACTCCGTGGCACCTTCTTTTCAAAGC
* * * *
509841 CCGCGACTCTGTGGAACCTTCTTTTCAAAGC
1 CCACAACTCCGTGGCACCTTCTTTTCAAAGC
*
509872 CCACAACTCCGTGGCACTCTTTTTCCCTTTT-AAAAC
1 CCACAACTCCGTGGCAC-C---TT--CTTTTCAAAGC
509908 CCACAACTCCGTGGCACCTT
1 CCACAACTCCGTGGCACCTT
509928 GTTCTTTTTA
Statistics
Matches: 149, Mismatches: 25, Indels: 25
0.75 0.13 0.13
Matches are distributed among these distances:
31 62 0.42
32 4 0.03
33 29 0.19
34 3 0.02
35 4 0.03
36 42 0.28
37 5 0.03
ACGTcount: A:0.21, C:0.37, G:0.13, T:0.29
Consensus pattern (31 bp):
CCACAACTCCGTGGCACCTTCTTTTCAAAGC
Found at i:509940 original size:131 final size:131
Alignment explanation
Indices: 509706--509956 Score: 394
Period size: 131 Copynumber: 1.9 Consensus size: 131
509696 GAAGCATTTT
*
509706 AAGTCCACGACTCCGTGGCACCTTCTTTTCAAAACCCACAACTCCGTGGCACTCTTTCTCCCTTT
1 AAGTCCACGACTCCGTGGAACCTTCTTTTCAAAACCCACAACTCCGTGGCACTCTTTCTCCCTTT
** *
509771 TAAAGTCCACAACCCCATGGCACCTTGTTCCTTTTAAGTCCACGACTCCGTGGCACCTTCCTTTC
66 TAAAACCCACAACCCCATGGCACCTTGTTCCTTTTAAGTCCACAACTCCGTGGCACCTTCCTTTC
509836 A
131 A
* * * *
509837 AAGTCCGCGACTCTGTGGAACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTT
1 AAGTCCACGACTCCGTGGAACCTTCTTTTCAAAACCCACAACTCCGTGGCACTCTTTCTCCCTTT
* * * *
509902 TAAAACCCACAACTCCGTGGCACCTTGTTCTTTTTAAGTCCACAACTTCGTGGCA
66 TAAAACCCACAACCCCATGGCACCTTGTTCCTTTTAAGTCCACAACTCCGTGGCA
509957 TCTTTCACCC
Statistics
Matches: 108, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
131 108 1.00
ACGTcount: A:0.21, C:0.35, G:0.14, T:0.30
Consensus pattern (131 bp):
AAGTCCACGACTCCGTGGAACCTTCTTTTCAAAACCCACAACTCCGTGGCACTCTTTCTCCCTTT
TAAAACCCACAACCCCATGGCACCTTGTTCCTTTTAAGTCCACAACTCCGTGGCACCTTCCTTTC
A
Found at i:509954 original size:69 final size:69
Alignment explanation
Indices: 509741--509981 Score: 248
Period size: 69 Copynumber: 3.6 Consensus size: 69
509731 TTTTCAAAAC
* * * *
509741 CCACAACTCCGTGGCACTCTTTCTCCCTTTTAAAGTCCACAACCCCATGGCACCTTGTTCCTTTT
1 CCACAACTCCGTGGCACTCTTTCTCCCTTTTAAAGCCCACAACTCCGTGGCACCTTGTTCTTTTT
509806 AAGT
66 AAGT
* * * * * * *
509810 CCACGACTCCGTGGCAC-C--T-T-CCTTTCAAAGTCCGCGACTCTGTGGAACC---TTCTTTTC
1 CCACAACTCCGTGGCACTCTTTCTCCCTTTTAAAGCCCACAACTCCGTGGCACCTTGTTCTTTT-
* *
509867 AAAGC
65 TAAGT
* *
509872 CCACAACTCCGTGGCACTCTTTTTCCCTTTTAAAACCCACAACTCCGTGGCACCTTGTTCTTTTT
1 CCACAACTCCGTGGCACTCTTTCTCCCTTTTAAAGCCCACAACTCCGTGGCACCTTGTTCTTTTT
509937 AAGT
66 AAGT
* *
509941 CCACAACTTCGTGGCA-TCTTTCACCCTTTCTAAAGCCCACA
1 CCACAACTCCGTGGCACTCTTTCTCCCTTT-TAAAGCCCACA
509982 CAAGTCGGTG
Statistics
Matches: 137, Mismatches: 25, Indels: 20
0.75 0.14 0.11
Matches are distributed among these distances:
61 6 0.04
62 19 0.14
63 1 0.01
64 22 0.16
65 2 0.01
66 2 0.01
67 22 0.16
68 12 0.09
69 44 0.32
70 7 0.05
ACGTcount: A:0.21, C:0.36, G:0.13, T:0.31
Consensus pattern (69 bp):
CCACAACTCCGTGGCACTCTTTCTCCCTTTTAAAGCCCACAACTCCGTGGCACCTTGTTCTTTTT
AAGT
Found at i:510011 original size:33 final size:33
Alignment explanation
Indices: 509965--510134 Score: 245
Period size: 33 Copynumber: 5.2 Consensus size: 33
509955 CATCTTTCAC
*
509965 CCTT-TCTAAAGCCCACACAAGTCGGTGGCAAA
1 CCTTCTCTAAAGCCCACACAAGTTGGTGGCAAA
*
509997 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
1 CCTTCTCTAAAGCCCACACAAGTTGGTGGCAAA
* *
510030 CCTTCCCTAAAGCCCACACAAGTTGGTGGCAAC
1 CCTTCTCTAAAGCCCACACAAGTTGGTGGCAAA
**
510063 CCCACTCTAAAGCCCACACAAGTTGGTGGC-AA
1 CCTTCTCTAAAGCCCACACAAGTTGGTGGCAAA
* *
510095 CCATTCTCTAAAGCCCACGCAAGTTGGTGGCAAC
1 CC-TTCTCTAAAGCCCACACAAGTTGGTGGCAAA
510129 CCTTCT
1 CCTTCT
510135 AAGCCCAATA
Statistics
Matches: 124, Mismatches: 11, Indels: 5
0.89 0.08 0.04
Matches are distributed among these distances:
32 7 0.06
33 114 0.92
34 3 0.02
ACGTcount: A:0.28, C:0.34, G:0.18, T:0.19
Consensus pattern (33 bp):
CCTTCTCTAAAGCCCACACAAGTTGGTGGCAAA
Found at i:510199 original size:49 final size:49
Alignment explanation
Indices: 510134--510681 Score: 544
Period size: 49 Copynumber: 11.7 Consensus size: 49
510124 GCAACCCTTC
* * *
510134 TAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCTTCTT
* *
510183 TAAGTCTAATGTAGCTGGCCTTGAATCAGAACATTGGCA-C--CTTC--
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCTTCTT
* * * *
510227 -AAGTCTAATATCGCTGGCCTTGAATCAGCATATTGGCA----C--CTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCTTCTT
* * *
510269 TAAGTCCAATATAACTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCTTCTT
* *
510318 TAAGTCTAATGTAGTTGGCCTTGAATCAGCACATTGGCA-C--CTTC--
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCTTCTT
* * * *
510362 -AAGTCCAATATCGCTGGCCTTGAATCAGCATATTAGCACCTTCTTCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCTTCTT
*
510410 TAAGTCCAATGTAGTTGGCCTTGAATCAGCACATTGGCA-C--CTTC--
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCTTCTT
* * * * * *
510454 -AAGTCTAATATCGCTGGCCTTGAATCAGCATATTTGCACCTTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCTTCTT
*
510502 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCTTCTT
*
510551 TAAGTCCAATGTAGCTGGCCTTGAATTAGCACATTGGCA----C--CTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCTTCTT
* * * * *
510594 TAAGTCCAATATAGCTGGCCTTTAATCAGCACATTAGCATCTTTCCCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA-CCTT--CTTCTT
* **
510646 TAAGTTCAATGTAGCTGGTTTTGAATCAGCACATTG
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTG
510682 ACATCCTTTT
Statistics
Matches: 417, Mismatches: 52, Indels: 57
0.79 0.10 0.11
Matches are distributed among these distances:
40 1 0.00
42 1 0.00
43 171 0.41
44 2 0.00
45 1 0.00
46 19 0.05
47 1 0.00
48 3 0.01
49 184 0.44
50 1 0.00
52 33 0.08
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.33
Consensus pattern (49 bp):
TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCTTCTT
Found at i:510323 original size:92 final size:92
Alignment explanation
Indices: 510134--510624 Score: 538
Period size: 92 Copynumber: 5.3 Consensus size: 92
510124 GCAACCCTTC
* * * *
510134 TAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCTAATGTAGCT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCA----C--CTTTAAGTCCAATATAGCT
* *
510199 GGCCTTGAATCAGAACATTGGCA-C--CTTC--
60 GGCCTTGAATCAGCATATTGGCACCTTCTTCTT
* * * *
510227 -AAGTCTAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTAAGTCCAATATAACTGGCCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTTAAGTCCAATATAGCTGGCCTT
510291 GAATCAGCATATTGGCACCTTCTTCTT
66 GAATCAGCATATTGGCACCTTCTTCTT
* * * * *
510318 TAAGTCTAATGTAGTTGGCCTTGAATCAGCACATTGGCACCTTCAAGTCCAATATCGCTGGCCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTTAAGTCCAATATAGCTGGCCTT
*
510383 GAATCAGCATATTAGCACCTTCTTCTT
66 GAATCAGCATATTGGCACCTTCTTCTT
* * * * *
510410 TAAGTCCAATGTAGTTGGCCTTGAATCAGCACATTGGCACCTTCAAGTCTAATATCGCTGGCCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTTAAGTCCAATATAGCTGGCCTT
* *
510475 GAATCAGCATATTTGCACCTTCATCTT
66 GAATCAGCATATTGGCACCTTCTTCTT
*
510502 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGTAGCT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCA----C--CTTTAAGTCCAATATAGCT
* *
510567 GGCCTTGAATTAGCACATTGGCA----C--CTT
60 GGCCTTGAATCAGCATATTGGCACCTTCTTCTT
* *
510594 TAAGTCCAATATAGCTGGCCTTTAATCAGCA
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCA
510625 CATTAGCATC
Statistics
Matches: 355, Mismatches: 31, Indels: 25
0.86 0.08 0.06
Matches are distributed among these distances:
86 37 0.10
87 1 0.00
88 1 0.00
89 4 0.01
92 275 0.77
94 1 0.00
96 1 0.00
98 35 0.10
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.32
Consensus pattern (92 bp):
TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTTAAGTCCAATATAGCTGGCCTT
GAATCAGCATATTGGCACCTTCTTCTT
Found at i:510381 original size:135 final size:137
Alignment explanation
Indices: 510134--510628 Score: 577
Period size: 135 Copynumber: 3.6 Consensus size: 137
510124 GCAACCCTTC
* *
510134 TAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCTAATGTAGCT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCTTCTTTAAGTCTAATGTAGCT
* *
510199 GGCCTTGAATCAGAACATTGGCACCTTCAAGTCTAATATCGCTGGCCTTGAATCAGCATATTGGC
66 GGCCTTGAATCAGCACATTGGCACCTTCAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGC
510264 A-C-CTT
131 ACCTCTT
* * *
510269 TAAGTCCAATATAACTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCTAATGTAGTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCTTCTTTAAGTCTAATGTAGCT
*
510334 GGCCTTGAATCAGCACATTGGCACCTTCAAGTCCAATATCGCTGGCCTTGAATCAGCATATTAGC
66 GGCCTTGAATCAGCACATTGGCACCTTCAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGC
510399 ACCTTCTTCTT
131 A-C--C-TCTT
* * * *
510410 TAAGTCCAATGTAGTTGGCCTTGAATCAGCACATTGGCA-C--CTTC---AAGTCTAATATCGCT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCTTCTTTAAGTCTAATGTAGCT
* * * *
510469 GGCCTTGAATCAGCATATTTGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCAT
66 GGCCTTGAATCAGCACATTGGCACC-T--TC---AAGTCCAATATCGCTGGCCTTGAATCAGCAT
510534 ATTGGCACCTTCTTCTT
125 ATTGGCA-C--C-TCTT
* * * *
510551 TAAGTCCAATGTAGCTGGCCTTGAATTAGCACATTGGCA----C--CTTTAAGTCCAATATAGCT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCTTCTTTAAGTCTAATGTAGCT
*
510610 GGCCTTTAATCAGCACATT
66 GGCCTTGAATCAGCACATT
510629 AGCATCTTTC
Statistics
Matches: 321, Mismatches: 24, Indels: 24
0.87 0.07 0.07
Matches are distributed among these distances:
135 160 0.50
136 1 0.00
138 7 0.02
139 1 0.00
140 2 0.01
141 150 0.47
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.32
Consensus pattern (137 bp):
TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCTTCTTTAAGTCTAATGTAGCT
GGCCTTGAATCAGCACATTGGCACCTTCAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGC
ACCTCTT
Found at i:510625 original size:43 final size:43
Alignment explanation
Indices: 510548--510637 Score: 135
Period size: 43 Copynumber: 2.1 Consensus size: 43
510538 GCACCTTCTT
* * *
510548 CTTTAAGTCCAATGTAGCTGGCCTTGAATTAGCACATTGGCAC
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTAGCAC
* *
510591 CTTTAAGTCCAATATAGCTGGCCTTTAATCAGCACATTAGCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTAGCAC
510634 CTTT
1 CTTT
510638 CCCATCTTTA
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
43 42 1.00
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.33
Consensus pattern (43 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTAGCAC
Found at i:510677 original size:95 final size:93
Alignment explanation
Indices: 510499--510690 Score: 251
Period size: 95 Copynumber: 2.0 Consensus size: 93
510489 GCACCTTCAT
* * * *
510499 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTAGCACCTTCATCTTTAAGTCCAATGTA
* *
510564 GCTGGCCTTGAATTAGCACATTGGCA-C
66 GCTGGCCTTGAATCAGCACATTGACATC
* * *
510591 CTTTAAGTCCAATATAGCTGGCCTTTAATCAGCACATTAGCATCTTTCCCATCTTTAAGTTCAAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTAGCA-CCTT--CATCTTTAAGTCCAAT
**
510656 GTAGCTGGTTTTGAATCAGCACATTGACATC
63 GTAGCTGGCCTTGAATCAGCACATTGACATC
510687 CTTT
1 CTTT
510691 TTCTCATCTT
Statistics
Matches: 85, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
92 38 0.45
93 3 0.04
95 39 0.46
96 5 0.06
ACGTcount: A:0.25, C:0.23, G:0.17, T:0.35
Consensus pattern (93 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTAGCACCTTCATCTTTAAGTCCAATGTA
GCTGGCCTTGAATCAGCACATTGACATC
Found at i:510802 original size:67 final size:68
Alignment explanation
Indices: 510694--510820 Score: 177
Period size: 67 Copynumber: 1.9 Consensus size: 68
510684 ATCCTTTTTC
* * *
510694 TCATCTTTAAGCCTAATATCGTTGGCCGTGAATCAACATATTGGCATCTTTATCA-CTTTTCTCA
1 TCATCTTTAAGCCTAATATCGCTGGCCGTGAATCAACATATTGGCACCTTCATCATCTTTTCTCA
510758 TCT
66 TCT
* * *
510761 TCATCTTTAAGTCC-AATATTGCTGGCCTTGAATCAGCATATTGGCACCTTCATCATCTTT
1 TCATCTTTAAG-CCTAATATCGCTGGCCGTGAATCAACATATTGGCACCTTCATCATCTTT
510821 AAAACCCAAT
Statistics
Matches: 52, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
67 46 0.88
68 6 0.12
ACGTcount: A:0.24, C:0.24, G:0.13, T:0.39
Consensus pattern (68 bp):
TCATCTTTAAGCCTAATATCGCTGGCCGTGAATCAACATATTGGCACCTTCATCATCTTTTCTCA
TCT
Found at i:510948 original size:227 final size:228
Alignment explanation
Indices: 510609--511035 Score: 565
Period size: 227 Copynumber: 1.9 Consensus size: 228
510599 CCAATATAGC
* * ****
510609 TGGCCTTTAATCAGCACATTAGCATCTTTCCCATCTTTAAGTTCAATGTAGCTGGTTTTGAATCA
1 TGGCCTTGAATCAGCACATTAGCATCTTTCCCATCTTCAAGTTCAATGTAGCTGACCGTGAATCA
* * *
510674 GCACATTGACATCCTTTTTCTCATCTTTAAGCCTAATATCGTTGGCCGTGAATCAACATATTGG-
66 GCACATTGACATCATTTTTCTCATCTTTAAGCCCAATATCATTGGCCGTGAATCAACATATTGGT
** * * *
510738 CATCTTTATCACTTTTC-TCATCTTCATCTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATAT
131 C-TCTTTATCACTCGTCATCATCATCATCTTTAAGTCCAATATTGCAGGCCTTGAATCAGCATAG
510802 TGGCACCTTCATCATCTTTAAAACCCAATGTTGT
195 TGGCACCTTCATCATCTTTAAAACCCAATGTTGT
* * * * *
510836 TGGCCTTGAATCAGCACATTGGCATTTTTCTCATCTTCAAG-TCTATTGTCGCTGACCGTGAATC
1 TGGCCTTGAATCAGCACATTAGCATCTTTCCCATCTTCAAGTTC-AATGTAGCTGACCGTGAATC
*
510900 AGCACATTGACATCATTTTTCTCATCTTTGAA-CCCAATATCATTGGCCGTGAATCAACGTATTG
65 AGCACATTGACATCATTTTTCTCATCTTT-AAGCCCAATATCATTGGCCGTGAATCAACATATTG
* * * * * *
510964 GTCTTTTTATCACTCGTCATCCTCATCATCTTTAAGTCTAGTGTTGCAGGCCTTGAATCTGCATA
129 GTCTCTTTATCACTCGTCATCATCATCATCTTTAAGTCCAATATTGCAGGCCTTGAATCAGCATA
511029 GTGGCAC
194 GTGGCAC
511036 ATTGCAATGA
Statistics
Matches: 170, Mismatches: 26, Indels: 7
0.84 0.13 0.03
Matches are distributed among these distances:
226 2 0.01
227 120 0.71
228 48 0.28
ACGTcount: A:0.24, C:0.24, G:0.15, T:0.37
Consensus pattern (228 bp):
TGGCCTTGAATCAGCACATTAGCATCTTTCCCATCTTCAAGTTCAATGTAGCTGACCGTGAATCA
GCACATTGACATCATTTTTCTCATCTTTAAGCCCAATATCATTGGCCGTGAATCAACATATTGGT
CTCTTTATCACTCGTCATCATCATCATCTTTAAGTCCAATATTGCAGGCCTTGAATCAGCATAGT
GGCACCTTCATCATCTTTAAAACCCAATGTTGT
Found at i:511472 original size:36 final size:34
Alignment explanation
Indices: 511393--511629 Score: 192
Period size: 31 Copynumber: 7.2 Consensus size: 34
511383 TGGGGATGAA
* *
511393 TTTT-AAGTCCACGACTCCGTGGCACC---TT-C
1 TTTTAAAGCCCACAACTCCGTGGCACCTTTTTCC
511422 TTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCC
1 TTTT-AAAGCCCACAACTCCGTGGCAC-CTTTTT-CC
* * * *
511459 TTTTAAAGTCCACAACCCCGTGGCCCCTTGTTCC
1 TTTTAAAGCCCACAACTCCGTGGCACCTTTTTCC
* * *
511493 TTTT-ATGTCCACGACTCCGTGGCACC---TTCC
1 TTTTAAAGCCCACAACTCCGTGGCACCTTTTTCC
* * * * *
511523 TTTCAAAGTCCGCGACTCTGTGGCACC-TTTT--
1 TTTTAAAGCCCACAACTCCGTGGCACCTTTTTCC
*
511554 TTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCC
1 TTTTAAAGCCCACAACTCCGTGGCAC-CTTTTT-CC
* *
511590 TTTTAAAGCCCACAACTCCGTGGCACCTTGTTCT
1 TTTTAAAGCCCACAACTCCGTGGCACCTTTTTCC
511624 TTTTAA
1 TTTTAA
511630 GTCCAAAACT
Statistics
Matches: 171, Mismatches: 21, Indels: 27
0.78 0.10 0.12
Matches are distributed among these distances:
29 4 0.02
30 7 0.04
31 60 0.35
32 2 0.01
33 24 0.14
34 13 0.08
35 12 0.07
36 44 0.26
37 5 0.03
ACGTcount: A:0.18, C:0.35, G:0.14, T:0.33
Consensus pattern (34 bp):
TTTTAAAGCCCACAACTCCGTGGCACCTTTTTCC
Found at i:511634 original size:131 final size:131
Alignment explanation
Indices: 511397--511634 Score: 404
Period size: 131 Copynumber: 1.8 Consensus size: 131
511387 GATGAATTTT
511397 AAGTCCACGACTCCGTGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTT
1 AAGTCCACGACTCCGTGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTT
* * *
511462 TAAAGTCCACAACCCCGTGGCCCCTTGTTCCTTTTATGTCCACGACTCCGTGGCACCTTCCTTTC
66 TAAAGCCCACAACCCCGTGGCACCTTGTTCCTTTTAAGTCCACGACTCCGTGGCACCTTCCTTTC
511527 A
131 A
* * *
511528 AAGTCCGCGACTCTGTGGCACCTTTTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTT
1 AAGTCCACGACTCCGTGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTT
* *
511593 TAAAGCCCACAACTCCGTGGCACCTTGTTCTTTTTAAGTCCA
66 TAAAGCCCACAACCCCGTGGCACCTTGTTCCTTTTAAGTCCA
511635 AAACTTCGAG
Statistics
Matches: 99, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
131 99 1.00
ACGTcount: A:0.18, C:0.35, G:0.15, T:0.32
Consensus pattern (131 bp):
AAGTCCACGACTCCGTGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTT
TAAAGCCCACAACCCCGTGGCACCTTGTTCCTTTTAAGTCCACGACTCCGTGGCACCTTCCTTTC
A
Found at i:511703 original size:33 final size:33
Alignment explanation
Indices: 511654--511792 Score: 208
Period size: 33 Copynumber: 4.2 Consensus size: 33
511644 GGCATCTTTC
511654 ACCCTT-TCTAAAGCCCACACAAGTCGGTGGCA
1 ACCCTTCTCTAAAGCCCACACAAGTCGGTGGCA
* * *
511686 AACCTTCCCTAAAGCCCACACAAGTTGGTGGCA
1 ACCCTTCTCTAAAGCCCACACAAGTCGGTGGCA
** *
511719 ACCCCACTCTAAAGCCCACACAAGTTGGTGGCA
1 ACCCTTCTCTAAAGCCCACACAAGTCGGTGGCA
*
511752 ACCCTTCTCTAAAGCCCACGCAAGTCGGTGGCA
1 ACCCTTCTCTAAAGCCCACACAAGTCGGTGGCA
511785 ACCCTTCT
1 ACCCTTCT
511793 AAGCCCAAGA
Statistics
Matches: 95, Mismatches: 11, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
32 5 0.05
33 90 0.95
ACGTcount: A:0.27, C:0.36, G:0.18, T:0.19
Consensus pattern (33 bp):
ACCCTTCTCTAAAGCCCACACAAGTCGGTGGCA
Found at i:511857 original size:49 final size:49
Alignment explanation
Indices: 511803--512247 Score: 488
Period size: 49 Copynumber: 9.5 Consensus size: 49
511793 AAGCCCAAGA
*
511803 TAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATG
1 TAGCTGGCCTTGAATCAGCACATTGGCACCTTCTTCTTTAAGTCCAATG
* * * *
511852 TAGCTGGCCTTAAATCAGCATATTGGCA-C--CTTC---AAGTCTAATA
1 TAGCTGGCCTTGAATCAGCACATTGGCACCTTCTTCTTTAAGTCCAATG
* * *
511895 TCGCTGGCCTTGAATCAGCACATTGGCA----C--CGTTAAGTCCAATA
1 TAGCTGGCCTTGAATCAGCACATTGGCACCTTCTTCTTTAAGTCCAATG
** * *
511938 TAATTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCTAATG
1 TAGCTGGCCTTGAATCAGCACATTGGCACCTTCTTCTTTAAGTCCAATG
* *
511987 TAGCTGGCCTTGAATCAGCACATTGGCA----C--CTTAAAGTCCAATA
1 TAGCTGGCCTTGAATCAGCACATTGGCACCTTCTTCTTTAAGTCCAATG
* * *
512030 TCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATG
1 TAGCTGGCCTTGAATCAGCACATTGGCACCTTCTTCTTTAAGTCCAATG
*
512079 TAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATG
1 TAGCTGGCCTTGAATCAGCACATTGGCACCTTCTTCTTTAAGTCCAATG
* *
512128 TAGCTGGCCTTGAATTAGCACATTGGCA----C--CTTTAAGTCCAATA
1 TAGCTGGCCTTGAATCAGCACATTGGCACCTTCTTCTTTAAGTCCAATG
* *
512171 TAGCTGGCCTTGAATCAGCACATTGGCACCTTTCCCATCTTTAAGTTCAATG
1 TAGCTGGCCTTGAATCAGCACATTGGCACC-TT--CTTCTTTAAGTCCAATG
*
512223 TAGCTGGCTTTGAATCAGCACATTG
1 TAGCTGGCCTTGAATCAGCACATTG
512248 ACATCCTTTT
Statistics
Matches: 339, Mismatches: 33, Indels: 45
0.81 0.08 0.11
Matches are distributed among these distances:
40 1 0.00
42 1 0.00
43 143 0.42
45 2 0.01
46 4 0.01
47 2 0.01
48 1 0.00
49 148 0.44
50 1 0.00
52 36 0.11
ACGTcount: A:0.25, C:0.24, G:0.18, T:0.32
Consensus pattern (49 bp):
TAGCTGGCCTTGAATCAGCACATTGGCACCTTCTTCTTTAAGTCCAATG
Found at i:511903 original size:43 final size:44
Alignment explanation
Indices: 511787--512202 Score: 444
Period size: 43 Copynumber: 9.1 Consensus size: 44
511777 CGGTGGCAAC
* *
511787 CCTTCTAAGCCCAAGATAGCTGGCCTTGAATCAGCATATTGGCA
1 CCTTCTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
* *
511831 CCTTCTTCTTTAAGTCCAATGTAGCTGGCCTTAAATCAGCATATTGGCA
1 -C--CTTC--TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
* * *
511880 CCTTC-AAGTCTAATATCGCTGGCCTTGAATCAGCACATTGGCA
1 CCTTCTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
* **
511923 CCGT-TAAGTCCAATATAATTGGCCTTGAATCAGCATATTGGCA
1 CCTTCTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
* * *
511966 CCTTCTTCTTTAAGTCTAATGTAGCTGGCCTTGAATCAGCACATTGGCA
1 -C--CTTC--TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
* *
512015 CCTT-AAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCA
1 CCTTCTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
*
512058 CCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCA
1 CC-T--TC--TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
* * *
512107 CCTTCTTCTTTAAGTCCAATGTAGCTGGCCTTGAATTAGCACATTGGCA
1 -C--CTTC--TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
*
512156 CCTT-TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCA
1 CCTTCTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
512199 CCTT
1 CCTT
512203 TCCCATCTTT
Statistics
Matches: 318, Mismatches: 33, Indels: 42
0.81 0.08 0.11
Matches are distributed among these distances:
43 146 0.46
44 2 0.01
45 1 0.00
46 13 0.04
47 4 0.01
48 3 0.01
49 146 0.46
50 1 0.00
51 1 0.00
52 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.31
Consensus pattern (44 bp):
CCTTCTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
Found at i:511984 original size:92 final size:88
Alignment explanation
Indices: 511840--512202 Score: 423
Period size: 92 Copynumber: 4.0 Consensus size: 88
511830 ACCTTCTTCT
* * * *
511840 TTAAGTCCAATGTAGCTGGCCTTAAATCAGCATATTGGCACCTTC---AAGTCTAATATCGCTGG
1 TTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTTAAGTCCAATATAGCTGG
511902 CCTTGAATCAGCACATTGGCACC
66 CCTTGAATCAGCACATTGGCACC
** * *
511925 GTTAAGTCCAATATAATTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCTAATGTAG
1 -TTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-C--CTTCTTTAAGTCCAATATAG
511990 CTGGCCTTGAATCAGCACATTGGCACC
62 CTGGCCTTGAATCAGCACATTGGCACC
* *
512017 TTAAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAG
1 TT-AAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACC-T--TCTTTAAGTCCAATATAG
*
512082 CTGGCCTTGAATCAGCATATTGGCACCTTCTTC
62 CTGGCCTTGAATCAGCACATTGGCA----C--C
* * *
512115 TTTAAGTCCAATGTAGCTGGCCTTGAATTAGCACATTGGCA-C--CTTTAAGTCCAATATAGCTG
1 -TTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTTAAGTCCAATATAGCTG
512177 GCCTTGAATCAGCACATTGGCACC
65 GCCTTGAATCAGCACATTGGCACC
512201 TT
1 TT
512203 TCCCATCTTT
Statistics
Matches: 243, Mismatches: 17, Indels: 35
0.82 0.06 0.12
Matches are distributed among these distances:
85 2 0.01
86 37 0.15
87 1 0.00
88 1 0.00
89 5 0.02
90 1 0.00
91 3 0.01
92 154 0.63
96 1 0.00
97 1 0.00
98 35 0.14
99 2 0.01
ACGTcount: A:0.26, C:0.25, G:0.18, T:0.31
Consensus pattern (88 bp):
TTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTTAAGTCCAATATAGCTGG
CCTTGAATCAGCACATTGGCACC
Found at i:512236 original size:52 final size:54
Alignment explanation
Indices: 512157--512521 Score: 208
Period size: 52 Copynumber: 6.6 Consensus size: 54
512147 ACATTGGCAC
*
512157 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCA-CC-TTTCCCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACATCCTTTTCCCAT
* * * *
512209 CTTTAAGTTCAATGTAGCTGGCTTTGAATCAGCACATTGACATCCTTTTTCTCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACATCC-TTTTCCCAT
* * * * *
512264 CTTTAAG-CCTAATATCGTTGGCCGTGAATCAACATATTGGCATCTTTATCACTTTTCTCATCTT
1 CTTTAAGTCC-AATATAGCTGGCCTTGAATCAGCACATT-G-A-C---ATC-CTTTTC-C--C--
512328 CAT
53 -AT
* * * *
512331 CTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATATTGGCA-CC--TTCATCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACATCCTTTTC-CCAT
** * * * * *
512383 CTTTAAAACCCAATGTTGTTGGCCTTGAATCAGCACATTGGCAT--TTTTCTCAT
1 CTTT-AAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACATCCTTTTCCCAT
* * *** * *
512436 CTTCAAGTCTAATGCCGCTGACCGTGAATCAGCACATTGACATCCTTTTTCCCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACATCC-TTTTCCCAT
* * * *
512491 CTTTGAACT-CAATATCGTTGGCCGTGAATCA
1 CTTT-AAGTCCAATATAGCTGGCCTTGAATCA
512522 ACGTATTGGT
Statistics
Matches: 243, Mismatches: 44, Indels: 49
0.72 0.13 0.15
Matches are distributed among these distances:
52 74 0.30
53 42 0.17
54 4 0.02
55 64 0.26
56 4 0.02
57 4 0.02
58 1 0.00
59 1 0.00
60 1 0.00
61 9 0.04
62 1 0.00
64 2 0.01
66 1 0.00
67 33 0.14
68 2 0.01
ACGTcount: A:0.24, C:0.25, G:0.15, T:0.36
Consensus pattern (54 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACATCCTTTTCCCAT
Found at i:512368 original size:67 final size:68
Alignment explanation
Indices: 512260--512386 Score: 177
Period size: 67 Copynumber: 1.9 Consensus size: 68
512250 ATCCTTTTTC
* * *
512260 TCATCTTTAAGCCTAATATCGTTGGCCGTGAATCAACATATTGGCATCTTTATCA-CTTTTCTCA
1 TCATCTTTAAGCCTAATATCGCTGGCCGTGAATCAACATATTGGCACCTTCATCATCTTTTCTCA
512324 TCT
66 TCT
* * *
512327 TCATCTTTAAGTCC-AATATTGCTGGCCTTGAATCAGCATATTGGCACCTTCATCATCTTT
1 TCATCTTTAAG-CCTAATATCGCTGGCCGTGAATCAACATATTGGCACCTTCATCATCTTT
512387 AAAACCCAAT
Statistics
Matches: 52, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
67 46 0.88
68 6 0.12
ACGTcount: A:0.24, C:0.24, G:0.13, T:0.39
Consensus pattern (68 bp):
TCATCTTTAAGCCTAATATCGCTGGCCGTGAATCAACATATTGGCACCTTCATCATCTTTTCTCA
TCT
Found at i:512507 original size:227 final size:228
Alignment explanation
Indices: 512175--512601 Score: 594
Period size: 227 Copynumber: 1.9 Consensus size: 228
512165 CCAATATAGC
* * * **
512175 TGGCCTTGAATCAGCACATTGGCACCTTTCCCATCTTTAAGTTCAATGTAGCTGGCTTTGAATCA
1 TGGCCTTGAATCAGCACATTGGCACCTTTCCCATCTTCAAGTTCAATGCAGCTGACCGTGAATCA
*
512240 GCACATTGACATCCTTTTTCTCATCTTTAAGCCTAATATCGTTGGCCGTGAATCAACATATTGG-
66 GCACATTGACATCCTTTTTCCCATCTTTAAGCCTAATATCGTTGGCCGTGAATCAACATATTGGT
** * * *
512304 CATCTTTATCACTTTTC-TCATCTTCATCTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATAT
131 CAT-TTTATCACTCGTCATCATCATCATCTTTAAGTCCAATATTGCAGGCCTTGAATCAGCATAG
512368 TGGCACCTTCATCATCTTTAAAACCCAATGTTGT
195 TGGCACCTTCATCATCTTTAAAACCCAATGTTGT
** * *
512402 TGGCCTTGAATCAGCACATTGGCATTTTTCTCATCTTCAAG-TCTAATGCCGCTGACCGTGAATC
1 TGGCCTTGAATCAGCACATTGGCACCTTTCCCATCTTCAAGTTC-AATGCAGCTGACCGTGAATC
*
512466 AGCACATTGACATCCTTTTTCCCATCTTTGAA--CTCAATATCGTTGGCCGTGAATCAACGTATT
65 AGCACATTGACATCCTTTTTCCCATCTTT-AAGCCT-AATATCGTTGGCCGTGAATCAACATATT
* * * * *
512529 GGTCCTTTTATCACTCGTCATCCTCATCATCTTTAAGTCCAGTGTTGCAGGCCTTGAATCTGCAT
128 GGTCATTTTATCACTCGTCATCATCATCATCTTTAAGTCCAATATTGCAGGCCTTGAATCAGCAT
512594 AGTGGCAC
193 AGTGGCAC
512602 ATTATAATGA
Statistics
Matches: 174, Mismatches: 21, Indels: 9
0.85 0.10 0.04
Matches are distributed among these distances:
226 4 0.02
227 120 0.69
228 50 0.29
ACGTcount: A:0.23, C:0.26, G:0.16, T:0.36
Consensus pattern (228 bp):
TGGCCTTGAATCAGCACATTGGCACCTTTCCCATCTTCAAGTTCAATGCAGCTGACCGTGAATCA
GCACATTGACATCCTTTTTCCCATCTTTAAGCCTAATATCGTTGGCCGTGAATCAACATATTGGT
CATTTTATCACTCGTCATCATCATCATCTTTAAGTCCAATATTGCAGGCCTTGAATCAGCATAGT
GGCACCTTCATCATCTTTAAAACCCAATGTTGT
Found at i:513007 original size:31 final size:31
Alignment explanation
Indices: 512967--513184 Score: 159
Period size: 31 Copynumber: 6.6 Consensus size: 31
512957 AATTTTAAGT
* *
512967 CCACGACTCCGTCGCACCTTCTTTTCAAAGC
1 CCACAACTCCGTGGCACCTTCTTTTCAAAGC
*
512998 CCACAACTCCGTGGCACTCTTTTTCCCTTTT-AAAGT
1 CCACAACTCCGTGGCAC-C---TT--CTTTTCAAAGC
* * ** *
513034 CCACAACCCCGTGGCACCTTATTCCTTTTAAGT
1 CCACAACTCCGTGGCACCTTCTT--TTCAAAGC
* * *
513067 CCACGACTCCGTGGCACCTTCCTTTCAAAGT
1 CCACAACTCCGTGGCACCTTCTTTTCAAAGC
* * * *
513098 CCGCGACTCTGTGGCACCTTATTTTCAAAGC
1 CCACAACTCCGTGGCACCTTCTTTTCAAAGC
* *
513129 CCACAACTCCGTGGCTCTCTTTTTCTCTTTTAAAGC
1 CCACAACTCCGTGGCAC-C---TTCT-TTTCAAAGC
513165 CCACAACTCCGTGGCACCTT
1 CCACAACTCCGTGGCACCTT
513185 GTTCTTTTTA
Statistics
Matches: 149, Mismatches: 24, Indels: 27
0.75 0.12 0.14
Matches are distributed among these distances:
30 2 0.01
31 60 0.40
32 8 0.05
33 23 0.15
35 7 0.05
36 44 0.30
37 5 0.03
ACGTcount: A:0.19, C:0.37, G:0.14, T:0.30
Consensus pattern (31 bp):
CCACAACTCCGTGGCACCTTCTTTTCAAAGC
Found at i:513038 original size:36 final size:34
Alignment explanation
Indices: 512987--513238 Score: 205
Period size: 36 Copynumber: 7.4 Consensus size: 34
512977 GTCGCACCTT
512987 CTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCC
1 CTTTT-AAAGCCCACAACTCCGTGGCAC-CTTTTT-C
* * *
513024 CTTTTAAAGTCCACAACCCCGTGGCACCTTATTC
1 CTTTTAAAGCCCACAACTCCGTGGCACCTTTTTC
* *
513058 CTTTT-AAGTCCACGACTCCGTGGCACC---TTC
1 CTTTTAAAGCCCACAACTCCGTGGCACCTTTTTC
* * * * * *
513088 CTTTCAAAGTCCGCGACTCTGTGGCACC-TTAT-
1 CTTTTAAAGCCCACAACTCCGTGGCACCTTTTTC
* *
513120 -TTTCAAAGCCCACAACTCCGTGGCTCTCTTTTTC
1 CTTTTAAAGCCCACAACTCCGTGGCAC-CTTTTTC
*
513154 TCTTTTAAAGCCCACAACTCCGTGGCACCTTGTT-
1 -CTTTTAAAGCCCACAACTCCGTGGCACCTTTTTC
* * * * **
513188 CTTTTTAAGTCCACAACTTCGTGGCATCTTTCACC
1 CTTTTAAAGCCCACAACTCCGTGGCACCTTT-TTC
513223 CTTTCTAAAGCCCACA
1 CTTT-TAAAGCCCACA
513239 CAAGTCGGTG
Statistics
Matches: 177, Mismatches: 27, Indels: 23
0.78 0.12 0.10
Matches are distributed among these distances:
30 7 0.04
31 41 0.23
32 1 0.01
33 50 0.28
34 6 0.03
35 14 0.08
36 53 0.30
37 5 0.03
ACGTcount: A:0.20, C:0.35, G:0.13, T:0.32
Consensus pattern (34 bp):
CTTTTAAAGCCCACAACTCCGTGGCACCTTTTTC
Found at i:513197 original size:131 final size:131
Alignment explanation
Indices: 512963--513213 Score: 394
Period size: 131 Copynumber: 1.9 Consensus size: 131
512953 GACGAATTTT
*
512963 AAGTCCACGACTCCGTCGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTT
1 AAGTCCACGACTCCGTCGCACCTTATTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTT
* *
513028 TAAAGTCCACAACCCCGTGGCACCTTATTCCTTTTAAGTCCACGACTCCGTGGCACCTTCCTTTC
66 TAAAGCCCACAACCCCGTGGCACCTTATTCCTTTTAAGTCCACAACTCCGTGGCACCTTCCTTTC
513093 A
131 A
* * * * *
513094 AAGTCCGCGACTCTGTGGCACCTTATTTTCAAAGCCCACAACTCCGTGGCTCTCTTTTTCTCTTT
1 AAGTCCACGACTCCGTCGCACCTTATTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTT
* * * *
513159 TAAAGCCCACAACTCCGTGGCACCTTGTTCTTTTTAAGTCCACAACTTCGTGGCA
66 TAAAGCCCACAACCCCGTGGCACCTTATTCCTTTTAAGTCCACAACTCCGTGGCA
513214 TCTTTCACCC
Statistics
Matches: 108, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
131 108 1.00
ACGTcount: A:0.20, C:0.35, G:0.14, T:0.31
Consensus pattern (131 bp):
AAGTCCACGACTCCGTCGCACCTTATTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTT
TAAAGCCCACAACCCCGTGGCACCTTATTCCTTTTAAGTCCACAACTCCGTGGCACCTTCCTTTC
A
Found at i:513263 original size:33 final size:33
Alignment explanation
Indices: 513222--513391 Score: 245
Period size: 33 Copynumber: 5.2 Consensus size: 33
513212 CATCTTTCAC
513222 CCTT-TCTAAAGCCCACACAAGTCGGTGGCAAA
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
513254 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
* * *
513287 CCTTCCCTAAAGCCCACACAAGTTGGTGGCAAC
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
** *
513320 CCCACTCTAAAGCCCACACAAGTTGGTGGC-AA
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
* *
513352 CCATTCTCTAAAGCCCACGCAAGTCGGTGGCAAC
1 CC-TTCTCTAAAGCCCACACAAGTCGGTGGCAAA
513386 CCTTCT
1 CCTTCT
513392 AAGCCCAATA
Statistics
Matches: 123, Mismatches: 12, Indels: 5
0.88 0.09 0.04
Matches are distributed among these distances:
32 7 0.06
33 113 0.92
34 3 0.02
ACGTcount: A:0.28, C:0.35, G:0.18, T:0.19
Consensus pattern (33 bp):
CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
Found at i:513455 original size:49 final size:47
Alignment explanation
Indices: 513391--513890 Score: 484
Period size: 43 Copynumber: 10.8 Consensus size: 47
513381 GCAACCCTTC
* *
513391 TAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCA-C-TCTTCTT
*
513440 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAC-CTTC--
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACTCTTCTT
* * *
513484 -AAGTCTAATATCGCTGGCCTTGAATCAGCACATT-G-ACAC--CTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACTCTTCTT
*
513526 TAAGTCCAATATAACTGGCCTTGAATCAGCACATTGGCAC-CTTC--
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACTCTTCTT
* *
513570 -AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCA-C-TCTTCTT
*
513618 TAAGTCCAATTGTAGCTGGCCTTGAATCAGCACATTGGCAC-CTTC--
1 TAAGTCCAA-TATAGCTGGCCTTGAATCAGCACATTGGCACTCTTCTT
* * *
513663 -AAGTCTAATATCGCTGGCCTTGAATCAGCATATTGGCAC-CTTCAACTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACTCTT---CTT
* * * *
513711 TAAGTCCAATGTTGGTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCA-C-TCTTCTT
* *
513760 TAAGTCCAATGTAGCTGGCCTTGAATTAGCACATTGGCA--C--CTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACTCTTCTT
* * * *
513803 TAAGTCCAATATAGCTGGCCTTTAATCTGCACATTAGCACCTTTCCCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCA-C--T--CTTCTT
* * *
513855 TAAGTTCAATGTAGCTGGCTTTGAATCAGCACATTG
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTG
513891 ACATCATTTT
Statistics
Matches: 380, Mismatches: 38, Indels: 63
0.79 0.08 0.13
Matches are distributed among these distances:
40 1 0.00
41 2 0.01
42 2 0.01
43 165 0.43
44 10 0.03
45 3 0.01
46 10 0.03
47 4 0.01
48 1 0.00
49 117 0.31
50 29 0.08
52 36 0.09
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.31
Consensus pattern (47 bp):
TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACTCTTCTT
Found at i:513555 original size:86 final size:89
Alignment explanation
Indices: 513386--513845 Score: 527
Period size: 92 Copynumber: 5.0 Consensus size: 89
513376 CGGTGGCAAC
* * * *
513386 CCTTCTAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATG
1 CCTTC-AAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACC-AC--CTTTAAGTCCAATG
513451 TAGCTGGCCTTGAATCAGCACATTGGCA
62 TAGCTGGCCTTGAATCAGCACATTGGCA
* * *
513479 CCTTCAAGTCTAATATCGCTGGCCTTGAATCAGCACATT-G-A-CACCTTTAAGTCCAATATAAC
1 CCTTCAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCACCTTTAAGTCCAATGTAGC
513541 TGGCCTTGAATCAGCACATTGGCA
66 TGGCCTTGAATCAGCACATTGGCA
* *
513565 CCTTCAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATTG
1 CCTTCAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACC-AC--CTTTAAGTCCAA-TG
513630 TAGCTGGCCTTGAATCAGCACATTGGCA
62 TAGCTGGCCTTGAATCAGCACATTGGCA
* * *
513658 CCTTCAAGTCTAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCAACTTTAAGTCCAATGT
1 CCTTCAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCA-C--CACCTTTAAGTCCAATGT
* * *
513723 TGGTGGCCTTGAATCAGCATATTGGCA
63 AGCTGGCCTTGAATCAGCACATTGGCA
* * *
513750 CCTTCTTCTTTAAGTCCAATGTAGCTGGCCTTGAATTAGCACATTGG---CACCTTTAAGTCCAA
1 -C--CTTC---AAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCACCTTTAAGTCCAA
* * * *
513812 TATAGCTGGCCTTTAATCTGCACATTAGCA
60 TGTAGCTGGCCTTGAATCAGCACATTGGCA
513842 CCTT
1 CCTT
513846 TCCCATCTTT
Statistics
Matches: 320, Mismatches: 31, Indels: 36
0.83 0.08 0.09
Matches are distributed among these distances:
86 77 0.24
87 1 0.00
88 2 0.01
89 5 0.02
90 2 0.01
91 2 0.01
92 106 0.33
93 88 0.28
94 1 0.00
95 4 0.01
96 1 0.00
98 31 0.10
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.31
Consensus pattern (89 bp):
CCTTCAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCACCTTTAAGTCCAATGTAGC
TGGCCTTGAATCAGCACATTGGCA
Found at i:513879 original size:95 final size:92
Alignment explanation
Indices: 513708--513890 Score: 240
Period size: 95 Copynumber: 2.0 Consensus size: 92
513698 GCACCTTCAA
* * * * * *
513708 CTTTAAGTCCAATGTTGGTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTAGCACCTTCATCTTTAAGTCCAATGTA
*
513773 GCTGGCCTTGAATTAGCACATTGGCAC
66 GCTGGCCTTGAATCAGCACATTGGCAC
* * *
513800 CTTTAAGTCCAATATAGCTGGCCTTTAATCTGCACATTAGCACCTTTCCCATCTTTAAGTTCAAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTAGCACC-TT--CATCTTTAAGTCCAAT
*
513865 GTAGCTGGCTTTGAATCAGCACATTG
63 GTAGCTGGCCTTGAATCAGCACATTG
513891 ACATCATTTT
Statistics
Matches: 77, Mismatches: 11, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
92 37 0.48
93 2 0.03
95 38 0.49
ACGTcount: A:0.24, C:0.23, G:0.18, T:0.34
Consensus pattern (92 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTAGCACCTTCATCTTTAAGTCCAATGTA
GCTGGCCTTGAATCAGCACATTGGCAC
Found at i:513935 original size:55 final size:55
Alignment explanation
Indices: 513876--514164 Score: 180
Period size: 55 Copynumber: 5.1 Consensus size: 55
513866 TAGCTGGCTT
* *
513876 TGAATCAGCACATTGACATCATTTTTCTCATCTTTAAGCCTAATATCATTGGCCG
1 TGAATCAGCACATTGACATCATTTTTCTCATCTTTAAGCCCAATATCGTTGGCCG
* * * * *
513931 TGAATCAACATATTAGCATCTTTATCACTTTTCTCATCTTCATCTTTAAGTCCAATATTGCTGGC
1 TGAATCAGCACATT-G-A-C---ATCA--TTT-T--TC-TCATCTTTAAGCCCAATATCGTTGGC
*
513996 CT
54 CG
* * * * * * *
513998 TGAATCAGCATATTGGCA-C---CTTCATCATCTTTAAAACCCAATGTTGTTGGCCT
1 TGAATCAGCACATTGACATCATTTTTC-TCATCTTT-AAGCCCAATATCGTTGGCCG
* * * * * * * *
514051 TGAATCAACACATTG---GCATTTTTCTCATCTTCAAGTCTAATGTCGCTGACCG
1 TGAATCAGCACATTGACATCATTTTTCTCATCTTTAAGCCCAATATCGTTGGCCG
514103 TGAATCAGCACATTGACATCATTTTTCTCATCTTTGAA-CCCAATATCGTTGGCCG
1 TGAATCAGCACATTGACATCATTTTTCTCATCTTT-AAGCCCAATATCGTTGGCCG
514158 TGAATCA
1 TGAATCA
514165 ACGTATTGGT
Statistics
Matches: 178, Mismatches: 35, Indels: 42
0.70 0.14 0.16
Matches are distributed among these distances:
51 1 0.01
52 37 0.21
53 36 0.20
54 4 0.02
55 46 0.26
56 3 0.02
57 1 0.01
58 1 0.01
60 1 0.01
61 5 0.03
63 3 0.02
64 2 0.01
66 3 0.02
67 35 0.20
ACGTcount: A:0.26, C:0.24, G:0.13, T:0.36
Consensus pattern (55 bp):
TGAATCAGCACATTGACATCATTTTTCTCATCTTTAAGCCCAATATCGTTGGCCG
Found at i:514011 original size:67 final size:68
Alignment explanation
Indices: 513903--514029 Score: 159
Period size: 67 Copynumber: 1.9 Consensus size: 68
513893 ATCATTTTTC
* * *
513903 TCATCTTTAAGCCTAATATCATTGGCCGTGAATCAACATATTAGCATCTTTATCA-CTTTTCTCA
1 TCATCTTTAAGCCTAATATCACTGGCCGTGAATCAACATATTAGCACCTTCATCATCTTTTCTCA
513967 TCT
66 TCT
** * * *
513970 TCATCTTTAAGTCC-AATATTGCTGGCCTTGAATCAGCATATTGGCACCTTCATCATCTTT
1 TCATCTTTAAG-CCTAATATCACTGGCCGTGAATCAACATATTAGCACCTTCATCATCTTT
514030 AAAACCCAAT
Statistics
Matches: 50, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
67 44 0.88
68 6 0.12
ACGTcount: A:0.25, C:0.24, G:0.11, T:0.39
Consensus pattern (68 bp):
TCATCTTTAAGCCTAATATCACTGGCCGTGAATCAACATATTAGCACCTTCATCATCTTTTCTCA
TCT
Found at i:514079 original size:53 final size:52
Alignment explanation
Indices: 513970--514166 Score: 144
Period size: 53 Copynumber: 3.7 Consensus size: 52
513960 TTTCTCATCT
** * * * * **
513970 TCATCTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATATTGGCA-CCTTC
1 TCATCTTTAAACCCAATATCGCTGGCCGTGAATCAACACATTGGCATTTTTC
* * * *
514021 ATCATCTTTAAAACCCAATGTTGTTGGCCTTGAATCAACACATTGGCATTTTTC
1 -TCATCTTT-AAACCCAATATCGCTGGCCGTGAATCAACACATTGGCATTTTTC
* ** * * * * *
514075 TCATCTTCAAGTCTAATGTCGCTGACCGTGAATCAGCACATTGACATCATTTTTC
1 TCATCTTTAAACCCAATATCGCTGGCCGTGAATCAACACATTG---GCATTTTTC
* *
514130 TCATCTTTGAACCCAATATCGTTGGCCGTGAATCAAC
1 TCATCTTTAAACCCAATATCGCTGGCCGTGAATCAAC
514167 GTATTGGTCT
Statistics
Matches: 113, Mismatches: 27, Indels: 7
0.77 0.18 0.05
Matches are distributed among these distances:
52 35 0.31
53 39 0.35
54 3 0.03
55 36 0.32
ACGTcount: A:0.26, C:0.25, G:0.15, T:0.35
Consensus pattern (52 bp):
TCATCTTTAAACCCAATATCGCTGGCCGTGAATCAACACATTGGCATTTTTC
Found at i:514681 original size:36 final size:34
Alignment explanation
Indices: 514602--514856 Score: 196
Period size: 31 Copynumber: 7.7 Consensus size: 34
514592 TGGGGATGAA
*
514602 TTTT-AAGTCCACGACTCCGTGGCACC---TT-C
1 TTTTAAAGTCCACAACTCCGTGGCACCTTGTTCC
* *
514631 TTTTCAAAGCCCACAACTCCGTGGCACGCTTTTTCCC
1 TTTT-AAAGTCCACAACTCCGTGGCAC-CTTGTT-CC
* *
514668 TTTTAAAGTCCACAACCCCGTGGCCCCTTGTTCC
1 TTTTAAAGTCCACAACTCCGTGGCACCTTGTTCC
* * *
514702 TTTT-ATGTCCACGACTCCGTGGCA-C--ATTCC
1 TTTTAAAGTCCACAACTCCGTGGCACCTTGTTCC
* * * *
514732 TTTCAAAGTCCGCGACTCTGTGGCACC---TT-C
1 TTTTAAAGTCCACAACTCCGTGGCACCTTGTTCC
* *
514762 TTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCC
1 TTTT-AAAGTCCACAACTCCGTGGCAC-CTTGTT-CC
*
514799 TTTTAAAGCCCACAACTCCGTGGCACCTTGTT-C
1 TTTTAAAGTCCACAACTCCGTGGCACCTTGTTCC
* * *
514832 TTTTTAAGTCCAAAACTTCGTGGCA
1 TTTTAAAGTCCACAACTCCGTGGCA
514857 TCTTTCACCC
Statistics
Matches: 184, Mismatches: 25, Indels: 30
0.77 0.10 0.13
Matches are distributed among these distances:
29 4 0.02
30 11 0.06
31 56 0.30
32 4 0.02
33 38 0.21
34 6 0.03
35 14 0.08
36 41 0.22
37 10 0.05
ACGTcount: A:0.19, C:0.34, G:0.15, T:0.31
Consensus pattern (34 bp):
TTTTAAAGTCCACAACTCCGTGGCACCTTGTTCC
Found at i:514843 original size:131 final size:131
Alignment explanation
Indices: 514606--514843 Score: 404
Period size: 131 Copynumber: 1.8 Consensus size: 131
514596 GATGAATTTT
514606 AAGTCCACGACTCCGTGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACGCTTTTTCCCTTT
1 AAGTCCACGACTCCGTGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACGCTTTTTCCCTTT
* * *
514671 TAAAGTCCACAACCCCGTGGCCCCTTGTTCCTTTTATGTCCACGACTCCGTGGCACATTCCTTTC
66 TAAAGCCCACAACCCCGTGGCACCTTGTTCCTTTTAAGTCCACGACTCCGTGGCACATTCCTTTC
514736 A
131 A
* * *
514737 AAGTCCGCGACTCTGTGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTT
1 AAGTCCACGACTCCGTGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACGCTTTTTCCCTTT
* *
514802 TAAAGCCCACAACTCCGTGGCACCTTGTTCTTTTTAAGTCCA
66 TAAAGCCCACAACCCCGTGGCACCTTGTTCCTTTTAAGTCCA
514844 AAACTTCGTG
Statistics
Matches: 99, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
131 99 1.00
ACGTcount: A:0.19, C:0.35, G:0.15, T:0.31
Consensus pattern (131 bp):
AAGTCCACGACTCCGTGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACGCTTTTTCCCTTT
TAAAGCCCACAACCCCGTGGCACCTTGTTCCTTTTAAGTCCACGACTCCGTGGCACATTCCTTTC
A
Found at i:514912 original size:33 final size:33
Alignment explanation
Indices: 514863--515001 Score: 208
Period size: 33 Copynumber: 4.2 Consensus size: 33
514853 GGCATCTTTC
514863 ACCCTT-TCTAAAGCCCACACAAGTCGGTGGCA
1 ACCCTTCTCTAAAGCCCACACAAGTCGGTGGCA
* * *
514895 AACCTTCCCTAAAGCCCACACAAGTTGGTGGCA
1 ACCCTTCTCTAAAGCCCACACAAGTCGGTGGCA
** *
514928 ACCCCACTCTAAAGCCCACACAAGTGGGTGGCA
1 ACCCTTCTCTAAAGCCCACACAAGTCGGTGGCA
*
514961 ACCCTTCTCTAAAGCCCACGCAAGTCGGTGGCA
1 ACCCTTCTCTAAAGCCCACACAAGTCGGTGGCA
514994 ACCCTTCT
1 ACCCTTCT
515002 AAGCCCAAGG
Statistics
Matches: 94, Mismatches: 12, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
32 5 0.05
33 89 0.95
ACGTcount: A:0.27, C:0.36, G:0.19, T:0.18
Consensus pattern (33 bp):
ACCCTTCTCTAAAGCCCACACAAGTCGGTGGCA
Found at i:515065 original size:49 final size:49
Alignment explanation
Indices: 515001--515548 Score: 589
Period size: 49 Copynumber: 11.7 Consensus size: 49
514991 GCAACCCTTC
* *
515001 TAAGCCCAAGGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
*
515050 TAAGTCCAATGTAGCTGGCCTTAAATCAGCATATTGGCA-C--CTTC--
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
* * * *
515094 -AAGTCTAATATCGCTGGCCTTGAATCAACATATTGGCA----C--CTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
* * *
515136 TAAGTCCAATATAACTGGCCTTGAATCAACATATTGGCACCTTCTTCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
* * *
515185 TAAGTCTAATGTAGCTGGCCTTGAATCAACACATTGGCA-C--CTTC--
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
* * * *
515229 -AAGTCCAATATCGCTGGCCTTGAATCAACATATTGGCTCCTTCTTCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
*
515277 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA-C--CTTC--
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
* * * *
515321 -AAGTCTAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
515369 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
* *
515418 TAAGTCCAATGTAGCTGGCCTTGAATTAGCACATTGGCA----C--CTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
* *
515461 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACC--TT-CTTCTT
* * * *
515513 TAAGTTCAATGTAGCTAGCTTTGAATCAGCACATTG
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTG
515549 ACATCCTTTT
Statistics
Matches: 425, Mismatches: 44, Indels: 57
0.81 0.08 0.11
Matches are distributed among these distances:
40 1 0.00
42 1 0.00
43 174 0.41
44 2 0.00
45 1 0.00
46 19 0.04
47 1 0.00
48 3 0.01
49 188 0.44
50 1 0.00
52 34 0.08
ACGTcount: A:0.26, C:0.25, G:0.18, T:0.32
Consensus pattern (49 bp):
TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
Found at i:515112 original size:43 final size:44
Alignment explanation
Indices: 514996--515503 Score: 531
Period size: 43 Copynumber: 11.1 Consensus size: 44
514986 CGGTGGCAAC
* **
514996 CCTTCTAAGCCCAAGGTAGCTGGCCTTGAATCAGCATATTGGCA
1 CCTTCTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
* *
515040 CCTTCTTCTTTAAGTCCAATGTAGCTGGCCTTAAATCAGCATATTGGCA
1 -C--CTTC--TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
* * *
515089 CCTTC-AAGTCTAATATCGCTGGCCTTGAATCAACATATTGGCA
1 CCTTCTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
* *
515132 CCTT-TAAGTCCAATATAACTGGCCTTGAATCAACATATTGGCA
1 CCTTCTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
* * * *
515175 CCTTCTTCTTTAAGTCTAATGTAGCTGGCCTTGAATCAACACATTGGCA
1 -C--CTTC--TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
* * *
515224 CCTTC-AAGTCCAATATCGCTGGCCTTGAATCAACATATTGGCTC
1 CCTTCTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGC-A
* *
515268 CTTCTTCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA
1 C--CTTC--TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
* *
515316 CCTTC-AAGTCTAATATCGCTGGCCTTGAATCAGCATATTGGCA
1 CCTTCTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
*
515359 CCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCA
1 CC-T--TC--TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
* * *
515408 CCTTCTTCTTTAAGTCCAATGTAGCTGGCCTTGAATTAGCACATTGGCA
1 -C--CTTC--TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
515457 CCTT-TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
1 CCTTCTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
515500 CCTT
1 CCTT
515504 TTCCATCTTT
Statistics
Matches: 400, Mismatches: 37, Indels: 54
0.81 0.08 0.11
Matches are distributed among these distances:
43 181 0.45
44 3 0.01
45 1 0.00
46 24 0.06
47 4 0.01
48 4 0.01
49 180 0.45
50 1 0.00
51 1 0.00
52 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.32
Consensus pattern (44 bp):
CCTTCTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
Found at i:515169 original size:22 final size:20
Alignment explanation
Indices: 515107--515173 Score: 57
Period size: 19 Copynumber: 3.2 Consensus size: 20
515097 TCTAATATCG
515107 CTGGCCTTGAATCAACATAT
1 CTGGCCTTGAATCAACATAT
* * *
515127 -TGGCACCTTTAAGTCCAATATAA
1 CTGG--CCTTGAA-T-CAACATAT
515150 CTGGCCTTGAATCAACATAT
1 CTGGCCTTGAATCAACATAT
515170 -TGGC
1 CTGGC
515174 ACCTTCTTCT
Statistics
Matches: 36, Mismatches: 6, Indels: 11
0.68 0.11 0.21
Matches are distributed among these distances:
19 7 0.19
20 6 0.17
21 7 0.19
22 7 0.19
23 6 0.17
24 3 0.08
ACGTcount: A:0.30, C:0.24, G:0.16, T:0.30
Consensus pattern (20 bp):
CTGGCCTTGAATCAACATAT
Found at i:515191 original size:92 final size:92
Alignment explanation
Indices: 515001--515504 Score: 582
Period size: 92 Copynumber: 5.5 Consensus size: 92
514991 GCAACCCTTC
* * *
515001 TAAGCCCAAGGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGTAGCT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCA----C--CTTTAAGTCCAATATAGCT
*
515066 GGCCTTAAATCAGCATATTGGCA-C--CTTC--
60 GGCCTTGAATCAGCATATTGGCACCTTCTTCTT
* * * * *
515094 -AAGTCTAATATCGCTGGCCTTGAATCAACATATTGGCACCTTTAAGTCCAATATAACTGGCCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTTAAGTCCAATATAGCTGGCCTT
*
515158 GAATCAACATATTGGCACCTTCTTCTT
66 GAATCAGCATATTGGCACCTTCTTCTT
* * * * *
515185 TAAGTCTAATGTAGCTGGCCTTGAATCAACACATTGGCACCTTCAAGTCCAATATCGCTGGCCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTTAAGTCCAATATAGCTGGCCTT
* *
515250 GAATCAACATATTGGCTCCTTCTTCTT
66 GAATCAGCATATTGGCACCTTCTTCTT
* * * *
515277 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCAAGTCTAATATCGCTGGCCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTTAAGTCCAATATAGCTGGCCTT
*
515342 GAATCAGCATATTGGCACCTTCATCTT
66 GAATCAGCATATTGGCACCTTCTTCTT
*
515369 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGTAGCT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCA----C--CTTTAAGTCCAATATAGCT
* *
515434 GGCCTTGAATTAGCACATTGGCA----C--CTT
60 GGCCTTGAATCAGCATATTGGCACCTTCTTCTT
*
515461 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTT
515505 TCCATCTTTA
Statistics
Matches: 368, Mismatches: 31, Indels: 31
0.86 0.07 0.07
Matches are distributed among these distances:
86 42 0.11
87 1 0.00
88 2 0.01
89 4 0.01
92 281 0.76
94 1 0.00
96 1 0.00
98 36 0.10
ACGTcount: A:0.26, C:0.25, G:0.18, T:0.32
Consensus pattern (92 bp):
TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTTAAGTCCAATATAGCTGGCCTT
GAATCAGCATATTGGCACCTTCTTCTT
Found at i:515537 original size:52 final size:55
Alignment explanation
Indices: 515458--515795 Score: 178
Period size: 52 Copynumber: 6.1 Consensus size: 55
515448 ACATTGGCAC
* * *
515458 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-CC-TTTTC-CAT
1 CTTTAAGTCCAATATAGCTAGCCTTGAATCAGCACATTGACATCCTTTTTCTCAT
* * *
515510 CTTTAAGTTCAATGTAGCTAGCTTTGAATCAGCACATTGACATCCTTTTTCTCAT
1 CTTTAAGTCCAATATAGCTAGCCTTGAATCAGCACATTGACATCCTTTTTCTCAT
* * * * * * * *
515565 CTTTAGGCCCAATATCGTTGGCCGTGAATCAACATATTGGCATCTTTATCACTTTTCTCATCTTC
1 CTTTAAGTCCAATATAGCTAGCCTTGAATCAGCACATT-G-A-C---ATC-C-TTT-T--TC-TC
515630 AT
54 AT
* * * * *
515632 CTTTAAGCCCAATATTGCTGGCCTTGAATCAGCATATTGGCA-CC---TTCATCAT
1 CTTTAAGTCCAATATAGCTAGCCTTGAATCAGCACATTGACATCCTTTTTC-TCAT
** * * * * *
515684 CTTTAAAACCCAATGTTGTTGGCCTTGAATCAGCACATTGGCA---TTTTTCTCAT
1 CTTT-AAGTCCAATATAGCTAGCCTTGAATCAGCACATTGACATCCTTTTTCTCAT
* * * *
515737 CTTCAAGTCTAATGTCA-CT-GACCGTGAATCAGCACATTGACATCCTTTTTCTCAT
1 CTTTAAGTCCAATAT-AGCTAG-CCTTGAATCAGCACATTGACATCCTTTTTCTCAT
515792 CTTT
1 CTTT
515796 GAACTCAATA
Statistics
Matches: 225, Mismatches: 37, Indels: 45
0.73 0.12 0.15
Matches are distributed among these distances:
51 1 0.00
52 74 0.33
53 43 0.19
54 9 0.04
55 43 0.19
56 1 0.00
57 1 0.00
58 1 0.00
59 1 0.00
60 1 0.00
61 4 0.02
62 1 0.00
63 3 0.01
64 2 0.01
66 3 0.01
67 37 0.16
ACGTcount: A:0.24, C:0.25, G:0.14, T:0.37
Consensus pattern (55 bp):
CTTTAAGTCCAATATAGCTAGCCTTGAATCAGCACATTGACATCCTTTTTCTCAT
Found at i:515669 original size:67 final size:68
Alignment explanation
Indices: 515561--515687 Score: 184
Period size: 67 Copynumber: 1.9 Consensus size: 68
515551 ATCCTTTTTC
* * * *
515561 TCATCTTTAGGCCCAATATCGTTGGCCGTGAATCAACATATTGGCATCTTTATCA-CTTTTCTCA
1 TCATCTTTAAGCCCAATATCGCTGGCCGTGAATCAACATATTGGCACCTTCATCATCTTTTCTCA
515625 TCT
66 TCT
* * *
515628 TCATCTTTAAGCCCAATATTGCTGGCCTTGAATCAGCATATTGGCACCTTCATCATCTTT
1 TCATCTTTAAGCCCAATATCGCTGGCCGTGAATCAACATATTGGCACCTTCATCATCTTT
515688 AAAACCCAAT
Statistics
Matches: 52, Mismatches: 7, Indels: 1
0.87 0.12 0.02
Matches are distributed among these distances:
67 48 0.92
68 4 0.08
ACGTcount: A:0.23, C:0.26, G:0.13, T:0.38
Consensus pattern (68 bp):
TCATCTTTAAGCCCAATATCGCTGGCCGTGAATCAACATATTGGCACCTTCATCATCTTTTCTCA
TCT
Found at i:515807 original size:227 final size:228
Alignment explanation
Indices: 515476--515902 Score: 580
Period size: 227 Copynumber: 1.9 Consensus size: 228
515466 CCAATATAGC
* * **
515476 TGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTTCAATGTAGCTAGCTTTGAATCA
1 TGGCCTTGAATCAGCACATTGGCACCTTTTCCATCTTCAAGTTCAATGTAGCTAGCCGTGAATCA
*
515541 GCACATTGACATCCTTTTTCTCATCTTTAGGCCCAATATCGTTGGCCGTGAATCAACATATTGG-
66 GCACATTGACATCCTTTTTCTCATCTTTAGACCCAATATCGTTGGCCGTGAATCAACATATTGGT
** * * *
515605 CATCTTTATCACTTTTC-TCATCTTCATCTTTAAGCCCAATATTGCTGGCCTTGAATCAGCATAT
131 CAT-TTTATCACTCGTCATCATCATCATCTTTAAGCCCAATATTGCAGGCCTTGAATCAGCATAG
515669 TGGCACCTTCATCATCTTTAAAACCCAATGTTGT
195 TGGCACCTTCATCATCTTTAAAACCCAATGTTGT
*
515703 TGGCCTTGAATCAGCACATTGGCA-TTTTTCTCATCTTCAAG-TCTAATGTCA-CT-GACCGTGA
1 TGGCCTTGAATCAGCACATTGGCACCTTTTC-CATCTTCAAGTTC-AATGT-AGCTAG-CCGTGA
* *
515764 ATCAGCACATTGACATCCTTTTTCTCATCTTT-GAACTCAATATCGTTGGCCGTGAATCAACGTA
62 ATCAGCACATTGACATCCTTTTTCTCATCTTTAG-ACCCAATATCGTTGGCCGTGAATCAACATA
* * * * * *
515828 TTGGTCCTTTTATCACTCGTCATCCTCATCATCTTTAAGTCCAGTGTTGCAGGCCTTGAATCTGC
126 TTGGTCATTTTATCACTCGTCATCATCATCATCTTTAAGCCCAATATTGCAGGCCTTGAATCAGC
515893 ATAGTGGCAC
191 ATAGTGGCAC
515903 ATTATAATGA
Statistics
Matches: 174, Mismatches: 19, Indels: 13
0.84 0.09 0.06
Matches are distributed among these distances:
226 9 0.05
227 117 0.67
228 48 0.28
ACGTcount: A:0.23, C:0.25, G:0.15, T:0.36
Consensus pattern (228 bp):
TGGCCTTGAATCAGCACATTGGCACCTTTTCCATCTTCAAGTTCAATGTAGCTAGCCGTGAATCA
GCACATTGACATCCTTTTTCTCATCTTTAGACCCAATATCGTTGGCCGTGAATCAACATATTGGT
CATTTTATCACTCGTCATCATCATCATCTTTAAGCCCAATATTGCAGGCCTTGAATCAGCATAGT
GGCACCTTCATCATCTTTAAAACCCAATGTTGT
Found at i:516310 original size:31 final size:31
Alignment explanation
Indices: 516264--516514 Score: 155
Period size: 31 Copynumber: 7.6 Consensus size: 31
516254 GATGAATTTT
*
516264 AAGTCCACGACTCCGTGGCACCTTCTTTTCA
1 AAGTCCACAACTCCGTGGCACCTTCTTTTCA
*
516295 AAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTT-A
1 AAGTCCACAACTCCGTGGCAC-C---TT--CTTTTCA
* * * ** * **
516331 AAGTCCGCAACCCCATGGTGCCTTGTTCCTTTT
1 AAGTCCACAACTCCGTGGCACCTTCTT--TTCA
* *
516364 AAGTCCACGACTCCGTGGCACCTTCCTTTCA
1 AAGTCCACAACTCCGTGGCACCTTCTTTTCA
* * *
516395 AAGTCCGCGACTCTGTGGCACCTTCTTTTCA
1 AAGTCCACAACTCCGTGGCACCTTCTTTTCA
* * *
516426 AAGCCCACAACTCTGTGGCACTCTTTTTCTCTTTTA
1 AAGTCCACAACTCCGTGGCAC-C---TTCT-TTTCA
* *
516462 AAGCCCACAACTCCGTGGCACCATGTTCTTTT-T
1 AAGTCCACAACTCCGTGGCACC---TTCTTTTCA
*
516495 AAGTCCACAACTTCGTGGCA
1 AAGTCCACAACTCCGTGGCA
516515 TCTTTGACCC
Statistics
Matches: 173, Mismatches: 33, Indels: 26
0.75 0.14 0.11
Matches are distributed among these distances:
30 2 0.01
31 67 0.39
32 6 0.03
33 37 0.21
34 3 0.02
35 13 0.08
36 40 0.23
37 5 0.03
ACGTcount: A:0.20, C:0.34, G:0.16, T:0.31
Consensus pattern (31 bp):
AAGTCCACAACTCCGTGGCACCTTCTTTTCA
Found at i:516498 original size:131 final size:131
Alignment explanation
Indices: 516264--516514 Score: 376
Period size: 131 Copynumber: 1.9 Consensus size: 131
516254 GATGAATTTT
516264 AAGTCCACGACTCCGTGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTT
1 AAGTCCACGACTCCGTGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTT
* * ** * *
516329 TAAAGTCCGCAACCCCATGGTGCCTTGTTCCTTTTAAGTCCACGACTCCGTGGCACCTTCCTTTC
66 TAAAGCCCACAACCCCATGGCACCATGTTCCTTTTAAGTCCACAACTCCGTGGCACCTTCCTTTC
516394 A
131 A
* * * *
516395 AAGTCCGCGACTCTGTGGCACCTTCTTTTCAAAGCCCACAACTCTGTGGCACTCTTTTTCTCTTT
1 AAGTCCACGACTCCGTGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTT
* * * *
516460 TAAAGCCCACAACTCCGTGGCACCATGTTCTTTTTAAGTCCACAACTTCGTGGCA
66 TAAAGCCCACAACCCCATGGCACCATGTTCCTTTTAAGTCCACAACTCCGTGGCA
516515 TCTTTGACCC
Statistics
Matches: 106, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
131 106 1.00
ACGTcount: A:0.20, C:0.34, G:0.16, T:0.31
Consensus pattern (131 bp):
AAGTCCACGACTCCGTGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTT
TAAAGCCCACAACCCCATGGCACCATGTTCCTTTTAAGTCCACAACTCCGTGGCACCTTCCTTTC
A
Found at i:516564 original size:33 final size:33
Alignment explanation
Indices: 516523--516692 Score: 227
Period size: 33 Copynumber: 5.2 Consensus size: 33
516513 CATCTTTGAC
516523 CCTT-TCTAAAGCCCACACAAGTCGGTGGCAAA
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
*
516555 CGTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
* ** *
516588 CCTTCCCTAAAGCCCACACAAGTTAGTGGCAAC
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
** *
516621 CCCACTCTAAAGCCCACACAAGTTGGTGGC-AA
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
* *
516653 CCATTCTCTAAAGCCCACGCAAGTCGGTGGCAAC
1 CC-TTCTCTAAAGCCCACACAAGTCGGTGGCAAA
516687 CCTTCT
1 CCTTCT
516693 AAGCCCAATA
Statistics
Matches: 119, Mismatches: 16, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
32 6 0.05
33 110 0.92
34 3 0.03
ACGTcount: A:0.29, C:0.34, G:0.18, T:0.19
Consensus pattern (33 bp):
CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
Found at i:516756 original size:49 final size:49
Alignment explanation
Indices: 516692--517239 Score: 598
Period size: 49 Copynumber: 11.7 Consensus size: 49
516682 GCAACCCTTC
* *
516692 TAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
*
516741 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA-C--CTTC--
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
* * *
516785 -ATGTCTAATGTCGCTGGCCTTGAATCAGCATATTGGCA----C--CTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
* * *
516827 TAAGTCCAATATAACTGGCCTTGAATCAACATATTGGCACCTTCTTCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
* * *
516876 TAAGTCTAATGTAGCTGGCCTTGAATCAACACATTGGCA-C--CTTC--
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
* * *
516920 -AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCTCCTTCTTCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
* *
516968 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTAGCA-C--CTTC--
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
* * * *
517012 -AAGTCTAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
517060 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
* *
517109 TAAGTCCAATGTAGCTGGCCTTGAATTAGCACATTGGCA----C--CTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
* * *
517152 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACATTTTCCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCAC--CTT-CTTCTT
* * *
517204 TAAGTTCAATGTAGCTGGCTTTGAATCAGCACATTG
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTG
517240 ACATCCTTTT
Statistics
Matches: 422, Mismatches: 47, Indels: 57
0.80 0.09 0.11
Matches are distributed among these distances:
40 1 0.00
42 1 0.00
43 170 0.40
44 2 0.00
45 1 0.00
46 19 0.05
47 1 0.00
48 3 0.01
49 188 0.45
50 1 0.00
52 35 0.08
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.32
Consensus pattern (49 bp):
TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
Found at i:516826 original size:21 final size:21
Alignment explanation
Indices: 516802--516869 Score: 59
Period size: 21 Copynumber: 3.2 Consensus size: 21
516792 ATGTCGCTGG
*
516802 CCTTGAATCAGCATATTGGCA
1 CCTTGAATCAACATATTGGCA
* * *
516823 CCTTTAAGTCCAATATAACTGG--
1 CCTTGAA-T-CAACAT-ATTGGCA
516845 CCTTGAATCAACATATTGGCA
1 CCTTGAATCAACATATTGGCA
516866 CCTT
1 CCTT
516870 CTTCTTTAAG
Statistics
Matches: 35, Mismatches: 7, Indels: 10
0.67 0.13 0.19
Matches are distributed among these distances:
19 4 0.11
20 5 0.14
21 11 0.31
22 7 0.20
23 4 0.11
24 4 0.11
ACGTcount: A:0.29, C:0.25, G:0.15, T:0.31
Consensus pattern (21 bp):
CCTTGAATCAACATATTGGCA
Found at i:516883 original size:92 final size:92
Alignment explanation
Indices: 516692--517191 Score: 583
Period size: 92 Copynumber: 5.4 Consensus size: 92
516682 GCAACCCTTC
* * *
516692 TAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGTAGCT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCA----C--CTTTAAGTCCAATATAGCT
*
516757 GGCCTTGAATCAGCACATTGGCA-C--CTTC--
60 GGCCTTGAATCAGCATATTGGCACCTTCTTCTT
* * * *
516785 -ATGTCTAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTTAAGTCCAATATAACTGGCCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTTAAGTCCAATATAGCTGGCCTT
*
516849 GAATCAACATATTGGCACCTTCTTCTT
66 GAATCAGCATATTGGCACCTTCTTCTT
* * * * *
516876 TAAGTCTAATGTAGCTGGCCTTGAATCAACACATTGGCACCTTCAAGTCCAATATCGCTGGCCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTTAAGTCCAATATAGCTGGCCTT
*
516941 GAATCAGCATATTGGCTCCTTCTTCTT
66 GAATCAGCATATTGGCACCTTCTTCTT
* * * * *
516968 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTAGCACCTTCAAGTCTAATATCGCTGGCCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTTAAGTCCAATATAGCTGGCCTT
*
517033 GAATCAGCATATTGGCACCTTCATCTT
66 GAATCAGCATATTGGCACCTTCTTCTT
*
517060 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGTAGCT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCA----C--CTTTAAGTCCAATATAGCT
* *
517125 GGCCTTGAATTAGCACATTGGCA----C--CTT
60 GGCCTTGAATCAGCATATTGGCACCTTCTTCTT
*
517152 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCAC
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCAC
517192 ATTTTCCATC
Statistics
Matches: 362, Mismatches: 33, Indels: 29
0.85 0.08 0.07
Matches are distributed among these distances:
86 38 0.10
87 1 0.00
88 2 0.01
89 4 0.01
92 279 0.77
94 1 0.00
96 1 0.00
98 36 0.10
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.32
Consensus pattern (92 bp):
TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTTAAGTCCAATATAGCTGGCCTT
GAATCAGCATATTGGCACCTTCTTCTT
Found at i:517219 original size:52 final size:54
Alignment explanation
Indices: 517149--517521 Score: 222
Period size: 52 Copynumber: 6.7 Consensus size: 54
517139 ACATTGGCAC
517149 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-CATTTTC-CAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCATTTTCTCAT
* * * * * *
517201 CTTTAAGTTCAATGTAGCTGGCTTTGAATCAGCACATTGACATCCTTTTTCTCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-CCATTTTCTCAT
* * * * *
517256 CTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTGGCATCTTTATCACTTTTCTCATCTTC
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-C-----CA---TT-T--TC-TC
517321 AT
53 AT
* *
517323 CTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATATTGGCACC---TTATCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCATTTTCTCAT
** * * * * *
517374 CTTTAAAACCCAATGTTGTTGGCCTTGAATCAGCACATTGGCA--TTTTTCTCAT
1 CTTT-AAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCATTTTCTCAT
* * * * * * * * *
517427 CTTCAAGTCTAATGTCGCTGACCGTGAATCAGCACATTGACATCCTTTTTCTCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-CCATTTTCTCAT
* * * * * *
517482 CTTTGAA-CCCAATATCGTTGGCCGTGAATCAACGTATTGG
1 CTTT-AAGTCCAATATAGCTGGCCTTGAATCAGCATATTGG
517522 TCCTTTTATC
Statistics
Matches: 250, Mismatches: 48, Indels: 43
0.73 0.14 0.13
Matches are distributed among these distances:
51 8 0.03
52 101 0.40
53 9 0.04
54 7 0.03
55 74 0.30
56 2 0.01
60 1 0.00
61 1 0.00
63 2 0.01
64 1 0.00
66 3 0.01
67 41 0.16
ACGTcount: A:0.25, C:0.24, G:0.15, T:0.36
Consensus pattern (54 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCATTTTCTCAT
Found at i:517360 original size:67 final size:67
Alignment explanation
Indices: 517252--517377 Score: 182
Period size: 67 Copynumber: 1.9 Consensus size: 67
517242 ATCCTTTTTC
* *
517252 TCATCTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTGGCATCTTTATCA-CTTTTCTCA
1 TCATCTTTAAGCCCAATATCGCTGGCCGTGAATCAACATATTGGCA-CCTTATCATCTTTTCTCA
517316 TCT
65 TCT
* * * *
517319 TCATCTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATATTGGCACCTTATCATCTTT
1 TCATCTTTAAGCCCAATATCGCTGGCCGTGAATCAACATATTGGCACCTTATCATCTTT
517378 AAAACCCAAT
Statistics
Matches: 52, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
66 7 0.13
67 45 0.87
ACGTcount: A:0.24, C:0.25, G:0.13, T:0.39
Consensus pattern (67 bp):
TCATCTTTAAGCCCAATATCGCTGGCCGTGAATCAACATATTGGCACCTTATCATCTTTTCTCAT
CT
Found at i:517495 original size:226 final size:227
Alignment explanation
Indices: 517167--517592 Score: 619
Period size: 226 Copynumber: 1.9 Consensus size: 227
517157 CCAATATAGC
* * * **
517167 TGGCCTTGAATCAGCATATTGGCACATTTTCCATCTTTAAGTTCAATGTAGCTGGCTTTGAATCA
1 TGGCCTTGAATCAGCACATTGGCACATTTTCCATCTTCAAGTTCAATGTAGCTGACCGTGAATCA
517232 GCACATTGACATCCTTTTTCTCATCTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTGG-
66 GCACATTGACATCCTTTTTCTCATCTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTGGT
** * * *
517296 CATCTTTATCACTTTTC-TCATCTTCATCTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATAT
131 CAT-TTTATCACTCGTCATCATCATCATCTTTAAGTCCAATATTGCAGGCCTTGAATCAGCATAG
517360 TGGCACCTTATCATCTTTAAAACCCAATGTTGT
195 TGGCACCTTATCATCTTTAAAACCCAATGTTGT
* *
517393 TGGCCTTGAATCAGCACATTGGCA-TTTTTCTCATCTTCAAG-TCTAATGTCGCTGACCGTGAAT
1 TGGCCTTGAATCAGCACATTGGCACATTTTC-CATCTTCAAGTTC-AATGTAGCTGACCGTGAAT
*
517456 CAGCACATTGACATCCTTTTTCTCATCTTTGAA-CCCAATATCGTTGGCCGTGAATCAACGTATT
64 CAGCACATTGACATCCTTTTTCTCATCTTT-AAGCCCAATATCGTTGGCCGTGAATCAACATATT
* * * * *
517520 GGTCCTTTTATCACTCGTCATCCTCATCATCTTTAAGTCCAGTGTTGCAGGCCTTGAATCTGCAT
128 GGTCATTTTATCACTCGTCATCATCATCATCTTTAAGTCCAATATTGCAGGCCTTGAATCAGCAT
517585 AGTGGCAC
193 AGTGGCAC
517593 ATTGCAATGA
Statistics
Matches: 177, Mismatches: 18, Indels: 9
0.87 0.09 0.04
Matches are distributed among these distances:
225 7 0.04
226 120 0.68
227 50 0.28
ACGTcount: A:0.23, C:0.25, G:0.16, T:0.36
Consensus pattern (227 bp):
TGGCCTTGAATCAGCACATTGGCACATTTTCCATCTTCAAGTTCAATGTAGCTGACCGTGAATCA
GCACATTGACATCCTTTTTCTCATCTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTGGT
CATTTTATCACTCGTCATCATCATCATCTTTAAGTCCAATATTGCAGGCCTTGAATCAGCATAGT
GGCACCTTATCATCTTTAAAACCCAATGTTGT
Found at i:518041 original size:36 final size:33
Alignment explanation
Indices: 517950--518195 Score: 172
Period size: 36 Copynumber: 7.5 Consensus size: 33
517940 TGGGGATGAA
* * *
517950 TTTT-AAGTCCACGACTCTGTGGCACC--TTCT
1 TTTTAAAGTCCACAACTCCGTGGCACCTTTTCC
* * * *
517980 TTTTAAAGCCCGCAACTGCGAGGCACTCTTTTTCCC
1 TTTTAAAGTCCACAACTCCGTGGCAC-C-TTTT-CC
*
518016 TTTTAAAGTCCACAACCCCGTGGCACCTTGTTCC
1 TTTTAAAGTCCACAACTCCGTGGCACCTT-TTCC
* *
518050 TTTT-AAGTCAACGACTCCGTGGCACC---TCC
1 TTTTAAAGTCCACAACTCCGTGGCACCTTTTCC
* * * **
518079 TTTCAAAGTCCGCGACTCTATGGCACC--TT-C
1 TTTTAAAGTCCACAACTCCGTGGCACCTTTTCC
*
518109 TTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCC
1 TTTT-AAAGTCCACAACTCCGTGGCAC-C-TTTT-CC
*
518146 TTTTAAAGCCCACAACTCCGTGGCACCTTATT-C
1 TTTTAAAGTCCACAACTCCGTGGCACCTT-TTCC
*
518179 TTTTTAAGTCCACAACT
1 TTTTAAAGTCCACAACT
518196 TCATGGCATC
Statistics
Matches: 171, Mismatches: 28, Indels: 31
0.74 0.12 0.13
Matches are distributed among these distances:
29 6 0.04
30 26 0.15
31 33 0.19
32 2 0.01
33 35 0.20
34 10 0.06
35 10 0.06
36 44 0.26
37 5 0.03
ACGTcount: A:0.21, C:0.33, G:0.14, T:0.32
Consensus pattern (33 bp):
TTTTAAAGTCCACAACTCCGTGGCACCTTTTCC
Found at i:518187 original size:130 final size:130
Alignment explanation
Indices: 517954--518188 Score: 380
Period size: 130 Copynumber: 1.8 Consensus size: 130
517944 GATGAATTTT
* * * *
517954 AAGTCCACGACTCTGTGGCACCTTCTTTTTAAAGCCCGCAACTGCGAGGCACTCTTTTTCCCTTT
1 AAGTCCACGACTCTATGGCACCTTCTTTTCAAAGCCCACAACTCCGAGGCACTCTTTTTCCCTTT
* *
518019 TAAAGTCCACAACCCCGTGGCACCTTGTTCCTTTTAAGTCAACGACTCCGTGGCACCTCCTTTCA
66 TAAAGCCCACAACCCCGTGGCACCTTATTCCTTTTAAGTCAACGACTCCGTGGCACCTCCTTTCA
* *
518084 AAGTCCGCGACTCTATGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTT
1 AAGTCCACGACTCTATGGCACCTTCTTTTCAAAGCCCACAACTCCGAGGCACTCTTTTTCCCTTT
* *
518149 TAAAGCCCACAACTCCGTGGCACCTTATTCTTTTTAAGTC
66 TAAAGCCCACAACCCCGTGGCACCTTATTCCTTTTAAGTC
518189 CACAACTTCA
Statistics
Matches: 95, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
130 95 1.00
ACGTcount: A:0.20, C:0.34, G:0.15, T:0.31
Consensus pattern (130 bp):
AAGTCCACGACTCTATGGCACCTTCTTTTCAAAGCCCACAACTCCGAGGCACTCTTTTTCCCTTT
TAAAGCCCACAACCCCGTGGCACCTTATTCCTTTTAAGTCAACGACTCCGTGGCACCTCCTTTCA
Found at i:518228 original size:36 final size:34
Alignment explanation
Indices: 518108--518228 Score: 118
Period size: 36 Copynumber: 3.4 Consensus size: 34
518098 ATGGCACCTT
*
518108 CTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCC
1 CTTTT-AAAGCCCACAACTCCGTGGCA-TC-TTTACC
* **
518145 CTTTTAAAGCCCACAACTCCGTGGCA-CCTTATT
1 CTTTTAAAGCCCACAACTCCGTGGCATCTTTACC
* * * *
518178 CTTTTTAAGTCCACAACTTCATGGCATCTTTCACC
1 CTTTTAAAGCCCACAACTCCGTGGCATCTTT-ACC
518213 CTTTCTAAAGCCCACA
1 CTTT-TAAAGCCCACA
518229 CAAGTCGGTG
Statistics
Matches: 68, Mismatches: 13, Indels: 7
0.77 0.15 0.08
Matches are distributed among these distances:
33 24 0.35
34 4 0.06
35 5 0.07
36 30 0.44
37 5 0.07
ACGTcount: A:0.23, C:0.35, G:0.10, T:0.32
Consensus pattern (34 bp):
CTTTTAAAGCCCACAACTCCGTGGCATCTTTACC
Found at i:518253 original size:33 final size:33
Alignment explanation
Indices: 518212--518381 Score: 227
Period size: 33 Copynumber: 5.2 Consensus size: 33
518202 CATCTTTCAC
518212 CCTT-TCTAAAGCCCACACAAGTCGGTGGCAAA
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
*
518244 CGTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
* ** *
518277 CCTTCCCTAAAGCCCACACAAGTTAGTGGCAAC
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
** *
518310 CCCACTCTAAAGCCCACACAAGTTGGTGGC-AA
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
* *
518342 CCATTCTCTAAAGCCCACGCAAGTCGGTGGCAAC
1 CC-TTCTCTAAAGCCCACACAAGTCGGTGGCAAA
518376 CCTTCT
1 CCTTCT
518382 AAGCCCAATA
Statistics
Matches: 119, Mismatches: 16, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
32 6 0.05
33 110 0.92
34 3 0.03
ACGTcount: A:0.29, C:0.34, G:0.18, T:0.19
Consensus pattern (33 bp):
CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
Found at i:518445 original size:49 final size:49
Alignment explanation
Indices: 518381--518793 Score: 450
Period size: 49 Copynumber: 8.7 Consensus size: 49
518371 GCAACCCTTC
* *
518381 TAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
* *
518430 TAACTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA-C--CTTC--
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
*
518474 -AAGTCCAATATCA-CTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
1 TAAGTCCAATGT-AGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
*
518522 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA-C--CTTC--
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
* * * *
518566 -AAGTCTAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
* *
518614 TAAGTTCAATGTAGCTGGCCTTGAATCAGTATATTGGCACCTTCTTCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
* * *
518663 TAAGTCCAATGTAGCTGGCCTTGAATTAGCACATCGGCA----C--CTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
** * * *
518706 TAAGTCCAACATAGCTAGCCTTGAATCAGCATGTTGGCACCTTTTCCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACC--TT-CTTCTT
* * *
518758 TAAGTTCAATGTAGCTGGCTTTGAATCAGCACATTG
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTG
518794 ACATCCTTTT
Statistics
Matches: 302, Mismatches: 39, Indels: 43
0.79 0.10 0.11
Matches are distributed among these distances:
43 102 0.34
44 3 0.01
45 1 0.00
46 15 0.05
48 3 0.01
49 145 0.48
50 1 0.00
52 32 0.11
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.32
Consensus pattern (49 bp):
TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
Found at i:518472 original size:21 final size:21
Alignment explanation
Indices: 518448--518515 Score: 50
Period size: 21 Copynumber: 3.2 Consensus size: 21
518438 ATGTAGCTGG
518448 CCTTGAATCAGCACATTGGCA
1 CCTTGAATCAGCACATTGGCA
* ** *
518469 CCTTCAAGTCCAATATCACTGG--
1 CCTTGAA-T-CAGCA-CATTGGCA
*
518491 CCTTGAATCAGCATATTGGCA
1 CCTTGAATCAGCACATTGGCA
518512 CCTT
1 CCTT
518516 CTTCTTTAAG
Statistics
Matches: 33, Mismatches: 9, Indels: 10
0.63 0.17 0.19
Matches are distributed among these distances:
19 4 0.12
20 3 0.09
21 11 0.33
22 7 0.21
23 3 0.09
24 5 0.15
ACGTcount: A:0.26, C:0.29, G:0.16, T:0.28
Consensus pattern (21 bp):
CCTTGAATCAGCACATTGGCA
Found at i:518543 original size:92 final size:92
Alignment explanation
Indices: 518376--518657 Score: 467
Period size: 92 Copynumber: 3.1 Consensus size: 92
518366 CGGTGGCAAC
* *
518376 CCTTCTAAGCCCAATAT-AGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAACTCCAAT
1 CCTTC-AAGTCCAATATCA-CTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAAT
518440 GTAGCTGGCCTTGAATCAGCACATTGGCA
64 GTAGCTGGCCTTGAATCAGCACATTGGCA
518469 CCTTCAAGTCCAATATCACTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGT
1 CCTTCAAGTCCAATATCACTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGT
518534 AGCTGGCCTTGAATCAGCACATTGGCA
66 AGCTGGCCTTGAATCAGCACATTGGCA
* * * *
518561 CCTTCAAGTCTAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTTCAATGT
1 CCTTCAAGTCCAATATCACTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGT
* *
518626 AGCTGGCCTTGAATCAGTATATTGGCA
66 AGCTGGCCTTGAATCAGCACATTGGCA
518653 CCTTC
1 CCTTC
518658 TTCTTTAAGT
Statistics
Matches: 180, Mismatches: 8, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
92 174 0.97
93 6 0.03
ACGTcount: A:0.24, C:0.27, G:0.17, T:0.32
Consensus pattern (92 bp):
CCTTCAAGTCCAATATCACTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGT
AGCTGGCCTTGAATCAGCACATTGGCA
Found at i:518640 original size:141 final size:141
Alignment explanation
Indices: 518381--518793 Score: 516
Period size: 141 Copynumber: 2.9 Consensus size: 141
518371 GCAACCCTTC
* * * * *
518381 TAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAACTCCAATGTAGCT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA-C--CTTC---AAGTCCAATATAGCT
* * *
518446 GGCCTTGAATCAGCACATTGGCACC-T--TC---AAGTCCAATATCA-CTGGCCTTGAATCAGCA
60 GGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTTCAATGT-AGCTGGCCTTGAATCAGCA
518504 TATTGGCACCTTCTTCTT
124 TATTGGCACCTTCTTCTT
* *
518522 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCAAGTCTAATATCGCTGGCCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCAAGTCCAATATAGCTGGCCTT
*
518587 GAATCAGCATATTGGCACCTTCATCTTTAAGTTCAATGTAGCTGGCCTTGAATCAGTATATTGGC
66 GAATCAGCATATTGGCACCTTCATCTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCATATTGGC
518652 ACCTTCTTCTT
131 ACCTTCTTCTT
* * * * *
518663 TAAGTCCAATGTAGCTGGCCTTGAATTAGCACATCGGCACCTTTAAGTCCAACATAGCTAGCCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCAAGTCCAATATAGCTGGCCTT
* * *
518728 GAATCAGCATGTTGGCACCTTTTCCATCTTTAAGTTCAATGTAGCTGGCTTTGAATCAGCACATT
66 GAATCAGCATATTGGCACC--TT-CATCTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCATATT
518793 G
128 G
518794 ACATCCTTTT
Statistics
Matches: 240, Mismatches: 22, Indels: 17
0.86 0.08 0.06
Matches are distributed among these distances:
135 35 0.15
136 1 0.00
138 6 0.03
140 2 0.01
141 155 0.65
143 2 0.01
144 39 0.16
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.32
Consensus pattern (141 bp):
TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCAAGTCCAATATAGCTGGCCTT
GAATCAGCATATTGGCACCTTCATCTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCATATTGGC
ACCTTCTTCTT
Done.