Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold318
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 411206
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
File 1 of 3
Found at i:7785 original size:52 final size:51
Alignment explanation
Indices: 7700--7823 Score: 212
Period size: 52 Copynumber: 2.4 Consensus size: 51
7690 ATATGAAAAG
* *
7700 TTGCTTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAA
1 TTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAA
*
7751 TTTGCCTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAA
1 -TTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAA
7803 TTGCCTGCATGTATCGATACA
1 TTGCCTGCATGTATCGATACA
7824 AAGATCAGTG
Statistics
Matches: 69, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
51 21 0.30
52 48 0.70
ACGTcount: A:0.28, C:0.18, G:0.19, T:0.35
Consensus pattern (51 bp):
TTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAA
Found at i:7836 original size:51 final size:51
Alignment explanation
Indices: 7700--7843 Score: 202
Period size: 52 Copynumber: 2.8 Consensus size: 51
7690 ATATGAAAAG
*
7700 TTGCTTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAAT
1 TTGCCTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTGGGCAAAT
* *
7752 TTGCCTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAA-
1 TTGCCTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTGGGCAAAT
*
7803 TTGCCTGCATGTATCGATACA-AAGATCAGTGTATCGATACA
1 TTGCCTGCATGTATCGATACATTA-AT-AGTGTATCGATACA
7844 ATGTATCGAT
Statistics
Matches: 84, Mismatches: 6, Indels: 5
0.88 0.06 0.05
Matches are distributed among these distances:
50 2 0.02
51 34 0.40
52 48 0.57
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34
Consensus pattern (51 bp):
TTGCCTGCATGTATCGATACATTAATAGTGTATCGATACATCTGGGCAAAT
Found at i:7850 original size:13 final size:13
Alignment explanation
Indices: 7832--7856 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7822 CAAAGATCAG
7832 TGTATCGATACAA
1 TGTATCGATACAA
7845 TGTATCGATACA
1 TGTATCGATACA
7857 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:7934 original size:33 final size:33
Alignment explanation
Indices: 7897--7963 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
7887 AGTAGCTTAA
7897 ATTGTATCGATACAAAAAAATATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
* ***
7930 ATTGTATCGATACAACATTTTATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
7963 A
1 A
7964 AATCGTTGAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.40, C:0.13, G:0.12, T:0.34
Consensus pattern (33 bp):
ATTGTATCGATACAAAAAAATATGTATCGATAC
Found at i:7937 original size:13 final size:13
Alignment explanation
Indices: 7919--7943 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7909 CAAAAAAATA
7919 TGTATCGATACAT
1 TGTATCGATACAT
7932 TGTATCGATACA
1 TGTATCGATACA
7944 ACATTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:9133 original size:21 final size:21
Alignment explanation
Indices: 9104--9148 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
9094 AAGTTTTCAT
*
9104 TTTTCTTAGCTAAC-TCATTA
1 TTTTCTTAGCCAACTTCATTA
*
9124 TTTTCATTAGCCAACTTCTTTA
1 TTTTC-TTAGCCAACTTCATTA
9146 TTT
1 TTT
9149 CAACTTGCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 8 0.38
22 8 0.38
ACGTcount: A:0.22, C:0.20, G:0.04, T:0.53
Consensus pattern (21 bp):
TTTTCTTAGCCAACTTCATTA
Found at i:11385 original size:13 final size:13
Alignment explanation
Indices: 11367--11392 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
11357 CAATTTTTTG
11367 TGTATCGATACAT
1 TGTATCGATACAT
11380 TGTATCGATACAT
1 TGTATCGATACAT
11393 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:12123 original size:42 final size:37
Alignment explanation
Indices: 12077--12178 Score: 107
Period size: 37 Copynumber: 2.6 Consensus size: 37
12067 TTGCCTATCA
*
12077 GCTTTGACCCGAGAGACTTCTTTACCTTTTGTCTA-CTCGTCG
1 GCTTTGACCCGAGAGA-TT-TTT---TTGTGTCTACCT-GTCG
*
12119 GCTTTAACCCGAGAGATTTTTTTGTGTCTACCTGTCG
1 GCTTTGACCCGAGAGATTTTTTTGTGTCTACCTGTCG
**
12156 GCTTTGACCTTAGAGATTTTTTT
1 GCTTTGACCCGAGAGATTTTTTT
12179 TTTGTTTGCT
Statistics
Matches: 54, Mismatches: 5, Indels: 7
0.82 0.08 0.11
Matches are distributed among these distances:
37 32 0.59
38 2 0.04
40 3 0.06
41 2 0.04
42 15 0.28
ACGTcount: A:0.16, C:0.23, G:0.20, T:0.42
Consensus pattern (37 bp):
GCTTTGACCCGAGAGATTTTTTTGTGTCTACCTGTCG
Found at i:12199 original size:38 final size:40
Alignment explanation
Indices: 12157--12245 Score: 110
Period size: 42 Copynumber: 2.2 Consensus size: 40
12147 TACCTGTCGG
** *
12157 CTTTGACCTTAGAGA-TTTTTT-TTTTGTTTGCTTGTCAA
1 CTTTGACCTTAGAGACTTTTTTCTTTAATTTGCTTATCAA
*
12195 CTTTGACCCTAGAGACTTTTTTACCTTTAATTTGCTTATCAA
1 CTTTGACCTTAGAGACTTTTTT--CTTTAATTTGCTTATCAA
12237 CTTTGACCT
1 CTTTGACCT
12246 GGGGTCTTAA
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
38 14 0.33
39 6 0.14
42 22 0.52
ACGTcount: A:0.19, C:0.19, G:0.12, T:0.49
Consensus pattern (40 bp):
CTTTGACCTTAGAGACTTTTTTCTTTAATTTGCTTATCAA
Found at i:12635 original size:42 final size:42
Alignment explanation
Indices: 12573--12991 Score: 285
Period size: 42 Copynumber: 10.2 Consensus size: 42
12563 CCAAAGACTT
** * *
12573 CTTTAGTCTATCTATCAGCTTTGACT-GTGGAGACTTTTTTAC
1 CTTTAGTCTGCCTATCGGCTTTGACTCG-GGAGACTTCTTTAC
** *
12615 CTTTAGTCTGCCTATTAGCTTTGACTCGAGAGACTTCTTTAC
1 CTTTAGTCTGCCTATCGGCTTTGACTCGGGAGACTTCTTTAC
* * * * *
12657 CTTTAGTCTACTTGTCGACTTTGAC-CAGGGAAACTTCTTTAC
1 CTTTAGTCTGCCTATCGGCTTTGACTC-GGGAGACTTCTTTAC
* * * *
12699 CTTTTGTCTGCTTGTCGGCTTTGACTCGGAAGACTTCTTTAC
1 CTTTAGTCTGCCTATCGGCTTTGACTCGGGAGACTTCTTTAC
* * ** *
12741 CTTTTA-TTTGCCTGTCGGCTTTGACTCATGAGACCTCTTTAC
1 C-TTTAGTCTGCCTATCGGCTTTGACTCGGGAGACTTCTTTAC
*
12783 CTTTAGTCTGCCTATCGGCTTTGACTCGGGAGACTTCTATATC
1 CTTTAGTCTGCCTATCGGCTTTGACTCGGGAGACTTCTTTA-C
* * ** * * **
12826 CGTTA-TCTACCCGTCGGCTTTGGCCCAAGAGACTTCTTTAC
1 CTTTAGTCTGCCTATCGGCTTTGACTCGGGAGACTTCTTTAC
* * *
12867 CTTTTGTCTGCCTGTCGGGTTTGA--C------CTTC---AC
1 CTTTAGTCTGCCTATCGGCTTTGACTCGGGAGACTTCTTTAC
* * * *
12898 CTTTTGTCTGCCCATCGGCTTTGACCCAGGAGACTTCTTTAC
1 CTTTAGTCTGCCTATCGGCTTTGACTCGGGAGACTTCTTTAC
** * * * *
12940 CATTTTTTCTGCCTATTGACTTTGATTCGAGAGACTTCTTTATC
1 C-TTTAGTCTGCCTATCGGCTTTGACTCGGGAGACTTCTTTA-C
12984 CTTT-GTCT
1 CTTTAGTCT
12992 ACCCGTTGGC
Statistics
Matches: 299, Mismatches: 58, Indels: 40
0.75 0.15 0.10
Matches are distributed among these distances:
31 23 0.08
33 1 0.00
34 4 0.01
39 4 0.01
40 1 0.00
41 9 0.03
42 210 0.70
43 45 0.15
44 2 0.01
ACGTcount: A:0.16, C:0.25, G:0.18, T:0.41
Consensus pattern (42 bp):
CTTTAGTCTGCCTATCGGCTTTGACTCGGGAGACTTCTTTAC
Found at i:12903 original size:31 final size:31
Alignment explanation
Indices: 12865--12923 Score: 91
Period size: 31 Copynumber: 1.9 Consensus size: 31
12855 AGACTTCTTT
** *
12865 ACCTTTTGTCTGCCTGTCGGGTTTGACCTTC
1 ACCTTTTGTCTGCCCATCGGCTTTGACCTTC
12896 ACCTTTTGTCTGCCCATCGGCTTTGACC
1 ACCTTTTGTCTGCCCATCGGCTTTGACC
12924 CAGGAGACTT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.08, C:0.32, G:0.20, T:0.39
Consensus pattern (31 bp):
ACCTTTTGTCTGCCCATCGGCTTTGACCTTC
Found at i:13570 original size:10 final size:10
Alignment explanation
Indices: 13555--13599 Score: 58
Period size: 10 Copynumber: 4.6 Consensus size: 10
13545 GTCGGTTTGT
13555 TAAAAAATAA
1 TAAAAAATAA
13565 TAAAAAATAA
1 TAAAAAATAA
13575 -AATAAAATAA
1 TAA-AAAATAA
*
13585 TAAAACATAA
1 TAAAAAATAA
13595 -AAAAA
1 TAAAAA
13600 GAGAAGCTAA
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
9 6 0.19
10 23 0.74
11 2 0.06
ACGTcount: A:0.80, C:0.02, G:0.00, T:0.18
Consensus pattern (10 bp):
TAAAAAATAA
Found at i:13581 original size:20 final size:20
Alignment explanation
Indices: 13558--13596 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
13548 GGTTTGTTAA
13558 AAAATAATAAAAAATAAAAT
1 AAAATAATAAAAAATAAAAT
*
13578 AAAATAATAAAACATAAAA
1 AAAATAATAAAAAATAAAA
13597 AAAGAGAAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.79, C:0.03, G:0.00, T:0.18
Consensus pattern (20 bp):
AAAATAATAAAAAATAAAAT
Found at i:13913 original size:30 final size:30
Alignment explanation
Indices: 13878--13951 Score: 114
Period size: 29 Copynumber: 2.5 Consensus size: 30
13868 ACAATTGTTG
13878 CAATGAAGACAAAAAACAAAATAGCTGCTA
1 CAATGAAGACAAAAAACAAAATAGCTGCTA
* *
13908 CAATGAAGAC-AAAAACAAAATAGTTGGTA
1 CAATGAAGACAAAAAACAAAATAGCTGCTA
*
13937 CAATGAAGATAAAAA
1 CAATGAAGACAAAAA
13952 TGAAACAGCA
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
29 26 0.65
30 14 0.35
ACGTcount: A:0.58, C:0.12, G:0.15, T:0.15
Consensus pattern (30 bp):
CAATGAAGACAAAAAACAAAATAGCTGCTA
Found at i:18664 original size:20 final size:21
Alignment explanation
Indices: 18620--18674 Score: 76
Period size: 20 Copynumber: 2.7 Consensus size: 21
18610 AAATGGTCTA
18620 GTATCGATACATTGCAAGCAT
1 GTATCGATACATTGCAAGCAT
***
18641 GTATCGATACATT-CACTTAT
1 GTATCGATACATTGCAAGCAT
18661 GTATCGATACATTG
1 GTATCGATACATTG
18675 TTGTATCAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
20 17 0.57
21 13 0.43
ACGTcount: A:0.31, C:0.18, G:0.16, T:0.35
Consensus pattern (21 bp):
GTATCGATACATTGCAAGCAT
Found at i:23876 original size:52 final size:52
Alignment explanation
Indices: 23814--23950 Score: 170
Period size: 52 Copynumber: 2.7 Consensus size: 52
23804 ATTGCCTACT
* * * *
23814 TGTATTGATACATTGAAAAATGTATCGATACATTTGAGTCAGAAACCCAGAA
1 TGTATTGATACAATGAAAAATGTATAGATATATTTGAGTCAAAAACCCAGAA
* * * * *
23866 TGTATCGATACAATGAAAAATATGTAGATATATTTGGGTCAAAAACCTAGAA
1 TGTATTGATACAATGAAAAATGTATAGATATATTTGAGTCAAAAACCCAGAA
*
23918 TGTATTG--ACAATGAAAAATGTATTGATATATTT
1 TGTATTGATACAATGAAAAATGTATAGATATATTT
23951 TCTTTCCAGA
Statistics
Matches: 72, Mismatches: 13, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
50 23 0.32
52 49 0.68
ACGTcount: A:0.42, C:0.09, G:0.17, T:0.32
Consensus pattern (52 bp):
TGTATTGATACAATGAAAAATGTATAGATATATTTGAGTCAAAAACCCAGAA
Found at i:24694 original size:59 final size:57
Alignment explanation
Indices: 24586--24724 Score: 147
Period size: 59 Copynumber: 2.4 Consensus size: 57
24576 TTTTCATGCA
* *
24586 TTTTTGTCATTTTAGTCATTTTCCATAACATAGGGATTTTCATGATATTTTATACATAT
1 TTTTTGTCATTTTAGTCATTTTCCATAACATAAGGATTTTCAGGATATTTTATA-A-AT
* * * * *
24645 TTTTTGTTATTTTAGTTATTTTCTATAACTTAAGGA-TTTCTAGGTTATTTTATAAATT
1 TTTTTGTCATTTTAGTCATTTTCCATAACATAAGGATTTTC-AGGATATTTTATAAA-T
24703 TTTTATGTCA-TTTAGGTCATTT
1 TTTT-TGTCATTTTA-GTCATTT
24725 CTCATGATCT
Statistics
Matches: 67, Mismatches: 9, Indels: 8
0.80 0.11 0.10
Matches are distributed among these distances:
57 1 0.01
58 14 0.21
59 52 0.78
ACGTcount: A:0.25, C:0.09, G:0.11, T:0.55
Consensus pattern (57 bp):
TTTTTGTCATTTTAGTCATTTTCCATAACATAAGGATTTTCAGGATATTTTATAAAT
Found at i:24772 original size:58 final size:57
Alignment explanation
Indices: 24691--24975 Score: 266
Period size: 58 Copynumber: 5.1 Consensus size: 57
24681 TTTCTAGGTT
* * * *
24691 ATTTTATAAATTTTTTATGTCATTTAGGTCATTTCTCATGATCTAGGGACTTGGATGCA
1 ATTTTATGAA-TTTTGATGTCATTTAGGTCATTT-TCATGATTTAGGGACTTTGATGCA
* * * * *
24750 ATTTTATGAATTTTAATTTCATTTAAGTCATTTTCCATGATTTAGAGACTTTAATGCA
1 ATTTTATGAATTTTGATGTCATTTAGGTCATTTT-CATGATTTAGGGACTTTGATGCA
* * * **
24808 ATTTTATAAATTTTGATGTCA--T---T--TTTT-GTGATTTAGGAACTTTGATATA
1 ATTTTATGAATTTTGATGTCATTTAGGTCATTTTCATGATTTAGGGACTTTGATGCA
* * * *
24857 ATTTTATGAATTTTGATATCATTTAGGTCATTTTTAATGATATAGGGACTTTGATGCG
1 ATTTTATGAATTTTGATGTCATTTAGGTCA-TTTTCATGATTTAGGGACTTTGATGCA
* *
24915 ATTTTATGAATTTT-ATGTCATGTT-GGTCATTTTCCATGATTTAGGGATTTTTATGCA
1 ATTTTATGAATTTTGATGTCAT-TTAGGTCATTTT-CATGATTTAGGGACTTTGATGCA
24972 ATTT
1 ATTT
24976 CATACCTTTC
Statistics
Matches: 183, Mismatches: 31, Indels: 26
0.76 0.13 0.11
Matches are distributed among these distances:
49 35 0.19
51 5 0.03
53 1 0.01
54 1 0.01
56 5 0.03
57 38 0.21
58 89 0.49
59 9 0.05
ACGTcount: A:0.27, C:0.08, G:0.15, T:0.49
Consensus pattern (57 bp):
ATTTTATGAATTTTGATGTCATTTAGGTCATTTTCATGATTTAGGGACTTTGATGCA
Found at i:24830 original size:49 final size:49
Alignment explanation
Indices: 24776--24880 Score: 122
Period size: 49 Copynumber: 2.1 Consensus size: 49
24766 TTTCATTTAA
*
24776 GTCATTTTCCATGATTTA-GAGACTTTAATGCAATTTTATAAATTTTGAT
1 GTCATTTTCCATGATTTAGGA-ACTTTAATACAATTTTATAAATTTTGAT
*** * * *
24825 GTCATTTTTTGTGATTTAGGAACTTTGATATAATTTTATGAATTTTGAT
1 GTCATTTTCCATGATTTAGGAACTTTAATACAATTTTATAAATTTTGAT
*
24874 ATCATTT
1 GTCATTT
24881 AGGTCATTTT
Statistics
Matches: 47, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
49 45 0.96
50 2 0.04
ACGTcount: A:0.29, C:0.08, G:0.13, T:0.50
Consensus pattern (49 bp):
GTCATTTTCCATGATTTAGGAACTTTAATACAATTTTATAAATTTTGAT
Found at i:27559 original size:2 final size:2
Alignment explanation
Indices: 27552--27581 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
27542 TAAGTCACTA
*
27552 AT AT AT AT AT AG AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
27582 TCAAACATAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (2 bp):
AT
Found at i:30189 original size:24 final size:24
Alignment explanation
Indices: 30157--30203 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
30147 TTTTGGCTAT
* *
30157 ATATATATTGTTATAGTAATATGG
1 ATATATATTCTCATAGTAATATGG
*
30181 ATATATATTCTCATAGTTATATG
1 ATATATATTCTCATAGTAATATG
30204 TACTTATAGG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.36, C:0.04, G:0.13, T:0.47
Consensus pattern (24 bp):
ATATATATTCTCATAGTAATATGG
Found at i:31798 original size:22 final size:23
Alignment explanation
Indices: 31754--31803 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 23
31744 TGAATAGTTA
*
31754 ATTTTATTTATAAAGGATCAATC
1 ATTTTATTTATAAAGAATCAATC
* *
31777 ATTTT-TTTATAAATAATTAATC
1 ATTTTATTTATAAAGAATCAATC
31799 -TTTTA
1 ATTTTA
31804 CCCATTGAAG
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
21 4 0.17
22 14 0.61
23 5 0.22
ACGTcount: A:0.38, C:0.06, G:0.04, T:0.52
Consensus pattern (23 bp):
ATTTTATTTATAAAGAATCAATC
Found at i:32407 original size:22 final size:22
Alignment explanation
Indices: 32343--32408 Score: 87
Period size: 22 Copynumber: 3.0 Consensus size: 22
32333 TCACAACAAC
* *
32343 AATATGTACATATGACTATAAC
1 AATATGTACATATGATTATAAT
*
32365 AATATGTACATATGATAATAAT
1 AATATGTACATATGATTATAAT
* *
32387 AATATGCACATATAATTATAAT
1 AATATGTACATATGATTATAAT
32409 TGAATGTATA
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 38 1.00
ACGTcount: A:0.48, C:0.09, G:0.08, T:0.35
Consensus pattern (22 bp):
AATATGTACATATGATTATAAT
Found at i:32907 original size:22 final size:22
Alignment explanation
Indices: 32880--32966 Score: 120
Period size: 22 Copynumber: 4.0 Consensus size: 22
32870 AAAGCATGTT
32880 TACATTTTAATATAAACATATG
1 TACATTTTAATATAAACATATG
*
32902 AACATTTTAATATAAACATATG
1 TACATTTTAATATAAACATATG
* *
32924 TACATTTTACTATAAGCATATG
1 TACATTTTAATATAAACATATG
* * *
32946 TCCATGTTACTATAAACATAT
1 TACATTTTAATATAAACATAT
32967 ATATATTATT
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 58 1.00
ACGTcount: A:0.43, C:0.13, G:0.06, T:0.39
Consensus pattern (22 bp):
TACATTTTAATATAAACATATG
Found at i:34789 original size:20 final size:20
Alignment explanation
Indices: 34752--34789 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
34742 AGCCTTTGAT
*
34752 CATGCATTTTCACTATGTTG
1 CATGCATTTTAACTATGTTG
34772 CATGCACTTTTAAC-ATGT
1 CATGCA-TTTTAACTATGT
34790 CTGGTATCTC
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 10 0.62
21 6 0.38
ACGTcount: A:0.24, C:0.21, G:0.13, T:0.42
Consensus pattern (20 bp):
CATGCATTTTAACTATGTTG
Found at i:38017 original size:26 final size:28
Alignment explanation
Indices: 37978--38035 Score: 66
Period size: 28 Copynumber: 2.1 Consensus size: 28
37968 GAATTTTTAC
* *
37978 TTTTCATTAAAC-TTGTA-CATATGAAA
1 TTTTCATTAAACTTTCTATAATATGAAA
* *
38004 TTTTTATTAGACTTTCTATAATATGAAA
1 TTTTCATTAAACTTTCTATAATATGAAA
38032 TTTT
1 TTTT
38036 AACTTTTTGC
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
26 10 0.38
27 4 0.15
28 12 0.46
ACGTcount: A:0.34, C:0.09, G:0.07, T:0.50
Consensus pattern (28 bp):
TTTTCATTAAACTTTCTATAATATGAAA
Found at i:38590 original size:20 final size:21
Alignment explanation
Indices: 38559--38597 Score: 71
Period size: 20 Copynumber: 1.9 Consensus size: 21
38549 AGGTCAAAAC
38559 CCTAGAAAGTATCGATACAAG
1 CCTAGAAAGTATCGATACAAG
38580 CCTAG-AAGTATCGATACA
1 CCTAGAAAGTATCGATACA
38598 TATTGCTTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 13 0.72
21 5 0.28
ACGTcount: A:0.41, C:0.21, G:0.18, T:0.21
Consensus pattern (21 bp):
CCTAGAAAGTATCGATACAAG
Found at i:38630 original size:33 final size:32
Alignment explanation
Indices: 38587--38650 Score: 83
Period size: 32 Copynumber: 2.0 Consensus size: 32
38577 AAGCCTAGAA
* *
38587 GTATCGATACATATTGCTTTATATCGATACATT
1 GTATCAATACATATT-CATTATATCGATACATT
* *
38620 GTATCAATACATGTTCATTGTATCGATACAT
1 GTATCAATACATATTCATTATATCGATACAT
38651 CAAGAATTGT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
32 14 0.52
33 13 0.48
ACGTcount: A:0.31, C:0.16, G:0.12, T:0.41
Consensus pattern (32 bp):
GTATCAATACATATTCATTATATCGATACATT
Found at i:45232 original size:59 final size:60
Alignment explanation
Indices: 44958--45394 Score: 415
Period size: 61 Copynumber: 7.3 Consensus size: 60
44948 ATCCTTTCAT
* * *
44958 TCCTCAAAGAGCAGGACA-C-ATTCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTCTAG
1 TCCTCAAAGAGCAGGACATCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTT-TCG
* *** * * *
45017 TCCTCAAAGAACAGGATGCCTTTTCCTTTTAAAGCTCACTCAAGTTGGTGGCA-ATTTCCAG
1 TCCTCAAAGAGCAGGACATCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTT-C-G
* * *
45078 TCCTCAAAAAGCAGGACATCTTTTCCTTTTAAAGCCCACACAATTTGGTGGCACCTTTCAA
1 TCCTCAAAGAGCAGGACATCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTC-G
* **** *
45139 TTCTCAAAGAGCAGGGTGCCTTTT-CTTTTAAAGCCCACACAAGTTGGT-ACACCTTTCG
1 TCCTCAAAGAGCAGGACATCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTCG
* *
45197 TCCTCAAAGAGCAGGACATCTTTTCCTTTTAAAGCCCACACAAGTTGTTGGCACCTTCCAG
1 TCCTCAAAGAGCAGGACATCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTC-G
* ** * * *
45258 TCCTCAAAGAGCATG--ATGATTT-CTTTTCAAAGTCCACAGAAGTTGGTGGCACCTTCTAG
1 TCCTCAAAGAGCAGGACATCTTTTCCTTTT-AAAGCCCACACAAGTTGGTGGCACCTT-TCG
* * * ** *
45317 TCCTTAAAAAGCAAGACAT-TTTCTCCTTGCAAAGCCCACACAAGTTGGTGGCACCTTCTAG
1 TCCTCAAAGAGCAGGACATCTTT-TCCTTTTAAAGCCCACACAAGTTGGTGGCACCTT-TCG
* *
45378 TCCCCAAAGAGCCGGAC
1 TCCTCAAAGAGCAGGAC
45395 GCACTTTATT
Statistics
Matches: 307, Mismatches: 57, Indels: 26
0.79 0.15 0.07
Matches are distributed among these distances:
58 24 0.08
59 89 0.29
60 35 0.11
61 153 0.50
62 6 0.02
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.27
Consensus pattern (60 bp):
TCCTCAAAGAGCAGGACATCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTCG
Found at i:45388 original size:239 final size:238
Alignment explanation
Indices: 44958--45389 Score: 586
Period size: 239 Copynumber: 1.8 Consensus size: 238
44948 ATCCTTTCAT
*
44958 TCCTCAAAGAGCAGGACACATTCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTCTAGTCCTCA
1 TCCTCAAAGAGCAGGACACATTCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTCCAGTCCTCA
* * *
45023 AAGAACAGGATGCCTTTTCCTTTTAAAGCTCACTCAAGTTGGTGGCAATTTCCAGTCCTCAAAAA
66 AAGAACAGGATG-CATTTCCTTTTAAAGCTCACACAAGTTGGTGGCAACTTCCAGTCCTCAAAAA
* ** * * *
45088 GCAGGACATCTTTTCCTTTTAAAGCCCACACAATTTGGTGGCACCTTTCAATTCTCAAAGAGCAG
130 GCAAGACATCTTTTCCTTGCAAAGCCCACACAAGTTGGTGGCACCTTTCAATCCCCAAAGAGCAG
45153 GGTGCCTTTTCTTTTAAAGCCCACACAAGTTGGTACACCTTTCG
195 GGTGCCTTTTCTTTTAAAGCCCACACAAGTTGGTACACCTTTCG
* * *
45197 TCCTCAAAGAGCAGGACATCTTTTCCTTTTAAAGCCCACACAAGTTGTTGGCACCTTCCAGTCCT
1 TCCTCAAAGAGCAGGACA-C-ATTCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTCCAGTCCT
* * * * * *
45262 CAAAGAGCATGATG-ATTT-CTTTTCAAAG-TCCACAGAAGTTGGTGGCACCTTCTAGTCCTTAA
64 CAAAGAACAGGATGCATTTCCTTTT-AAAGCT-CACACAAGTTGGTGGCAACTTCCAGTCCTCAA
*
45324 AAAGCAAGACAT-TTTCTCCTTGCAAAGCCCACACAAGTTGGTGGCACC-TTCTAGTCCCCAAAG
127 AAAGCAAGACATCTTT-TCCTTGCAAAGCCCACACAAGTTGGTGGCACCTTTC-AATCCCCAAAG
45387 AGC
190 AGC
45390 CGGACGCACT
Statistics
Matches: 167, Mismatches: 20, Indels: 12
0.84 0.10 0.06
Matches are distributed among these distances:
238 12 0.07
239 102 0.61
240 1 0.01
241 52 0.31
ACGTcount: A:0.28, C:0.27, G:0.17, T:0.28
Consensus pattern (238 bp):
TCCTCAAAGAGCAGGACACATTCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTCCAGTCCTCA
AAGAACAGGATGCATTTCCTTTTAAAGCTCACACAAGTTGGTGGCAACTTCCAGTCCTCAAAAAG
CAAGACATCTTTTCCTTGCAAAGCCCACACAAGTTGGTGGCACCTTTCAATCCCCAAAGAGCAGG
GTGCCTTTTCTTTTAAAGCCCACACAAGTTGGTACACCTTTCG
Found at i:45442 original size:41 final size:41
Alignment explanation
Indices: 45382--45700 Score: 206
Period size: 42 Copynumber: 8.0 Consensus size: 41
45372 TTCTAGTCCC
* * *
45382 CAAAGAGCCGGACGCACTTTATTTCCTTTTCCCTTTATCCT
1 CAAAGAGCAGGACGTACTTTATTTCCTTTTTCCTTTATCCT
* *
45423 CAAAGAGCAGGACGTACTTTATTTCCTTTTCTCTTTTGTCCT
1 CAAAGAGCAGGACGTACTTTATTTCCTTTT-TCCTTTATCCT
* * *
45465 CAAAGAGCATGAC--ACATTTAATTTCCTTCTTTTCTTTTGTCCT
1 CAAAGAGCAGGACGTAC-TTT-ATTTCC-T-TTTTCCTTTATCCT
** * *
45508 CAAAGAATAGGACGTATTTTATTTCCTTTTTTCCTTTTTCCT
1 CAAAGAGCAGGACGTACTTTATTTCC-TTTTTCCTTTATCCT
* * *
45550 CGAAGAGCAGGATGTAC------TCCTTTTTCCTTTTTCCT
1 CAAAGAGCAGGACGTACTTTATTTCCTTTTTCCTTTATCCT
* ** *
45585 CAAGGAGCAGGACCCA-TTTCA-TT-CTCTTTGCCTTTATCCT
1 CAAAGAGCAGGACGTACTTT-ATTTCCT-TTTTCCTTTATCCT
** * *
45625 TGAAGAGCAAGACGTAC------TCC-TTTTCCTTTGTCCT
1 CAAAGAGCAGGACGTACTTTATTTCCTTTTTCCTTTATCCT
* *
45659 CAAAGAGCAGGACGCATTTTATTTCCTTTTTTCCTTTATCCT
1 CAAAGAGCAGGACGTACTTTATTTCC-TTTTTCCTTTATCCT
45701 TAAGGAGTAG
Statistics
Matches: 216, Mismatches: 38, Indels: 47
0.72 0.13 0.16
Matches are distributed among these distances:
34 24 0.11
35 27 0.12
36 4 0.02
39 2 0.01
40 28 0.13
41 31 0.14
42 63 0.29
43 30 0.14
44 6 0.03
45 1 0.00
ACGTcount: A:0.20, C:0.25, G:0.13, T:0.41
Consensus pattern (41 bp):
CAAAGAGCAGGACGTACTTTATTTCCTTTTTCCTTTATCCT
Found at i:45642 original size:75 final size:76
Alignment explanation
Indices: 45493--45701 Score: 233
Period size: 75 Copynumber: 2.8 Consensus size: 76
45483 TAATTTCCTT
* ** ** * * * * *
45493 CTTTTCTTTTGTCCTCAAAGAATAGGACGTATTTTATTTCCTTTTTTCCTTTTTCCTCGAAGAGC
1 CTTTTCCTTTGTCCTCAAAGAGCAGGACCCATTTCATTTCCTCTTTGCCTTTATCCTTGAAGAGC
* *
45558 AGGATGTACTC
66 AAGACGTACTC
* *
45569 CTTTTTCCTTTTTCCTCAAGGAGCAGGACCCATTTCA-TT-CTCTTTGCCTTTATCCTTGAAGAG
1 C-TTTTCCTTTGTCCTCAAAGAGCAGGACCCATTTCATTTCCTCTTTGCCTTTATCCTTGAAGAG
45632 CAAGACGTACTC
65 CAAGACGTACTC
* * * *
45644 CTTTTCCTTTGTCCTCAAAGAGCAGGACGCATTTTATTTCCTTTTTTCCTTTATCCTT
1 CTTTTCCTTTGTCCTCAAAGAGCAGGACCCATTTCATTTCCTCTTTGCCTTTATCCTT
45702 AAGGAGTAGG
Statistics
Matches: 110, Mismatches: 20, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
74 31 0.28
75 33 0.30
76 19 0.17
77 27 0.25
ACGTcount: A:0.19, C:0.25, G:0.13, T:0.43
Consensus pattern (76 bp):
CTTTTCCTTTGTCCTCAAAGAGCAGGACCCATTTCATTTCCTCTTTGCCTTTATCCTTGAAGAGC
AAGACGTACTC
Found at i:45665 original size:34 final size:34
Alignment explanation
Indices: 45536--45672 Score: 112
Period size: 35 Copynumber: 3.8 Consensus size: 34
45526 TTATTTCCTT
* *
45536 TTTTCCTTTTTCCTCGAAGAGCAGGATGTACTCC
1 TTTTCCTTTTTCCTCAAAGAGCAGGACGTACTCC
* * *
45570 TTTTTCCTTTTTCCTCAAGGAGCAGGACCCATTTCATTCTC
1 -TTTTCCTTTTTCCTCAAAGAGCAGGA--C--GT-ACTC-C
* * ** *
45611 TTTGCCTTTATCCTTGAAGAGCAAGACGTACTCC
1 TTTTCCTTTTTCCTCAAAGAGCAGGACGTACTCC
*
45645 TTTTCCTTTGTCCTCAAAGAGCAGGACG
1 TTTTCCTTTTTCCTCAAAGAGCAGGACG
45673 CATTTTATTT
Statistics
Matches: 78, Mismatches: 18, Indels: 13
0.72 0.17 0.12
Matches are distributed among these distances:
34 24 0.31
35 27 0.35
36 1 0.01
38 1 0.01
39 1 0.01
40 23 0.29
41 1 0.01
ACGTcount: A:0.20, C:0.27, G:0.17, T:0.36
Consensus pattern (34 bp):
TTTTCCTTTTTCCTCAAAGAGCAGGACGTACTCC
Found at i:45713 original size:42 final size:42
Alignment explanation
Indices: 45645--45900 Score: 106
Period size: 42 Copynumber: 6.6 Consensus size: 42
45635 GACGTACTCC
* * *
45645 TTTTCCTTTGTCCTCAAAGAGCAGGACGCATTTTATTTCCTT
1 TTTTCCTTTATCCTCAAAGAGCAGGACCCATTTCATTTCCTT
* * *
45687 TTTTCCTTTATCCTTAAGGAGTAGGACCCATTTCA-----TT
1 TTTTCCTTTATCCTCAAAGAGCAGGACCCATTTCATTTCCTT
* * * * * *
45724 TTTTCCTTTGTTCTCGAAGAGCA--A--GATAT-A-CT-CTT
1 TTTTCCTTTATCCTCAAAGAGCAGGACCCATTTCATTTCCTT
* * * * * *
45759 TTTTCCTTTGTCCACAAGGAGTATGACCCATTTCA-TT-CTC
1 TTTTCCTTTATCCTCAAAGAGCAGGACCCATTTCATTTCCTT
* * * *
45799 TTTTCCTTTGTCCTCGAAGAGTAGGA--CA--T-A-CTCC--
1 TTTTCCTTTATCCTCAAAGAGCAGGACCCATTTCATTTCCTT
** * * * *
45833 TTTTAGTTTGTCCACAAAGAGCAGGACGCATTTTATTTCCTT
1 TTTTCCTTTATCCTCAAAGAGCAGGACCCATTTCATTTCCTT
45875 TTTTCCTTTATCCTCAAAGAGCAGGA
1 TTTTCCTTTATCCTCAAAGAGCAGGA
45901 TGTACTCCTT
Statistics
Matches: 159, Mismatches: 38, Indels: 34
0.69 0.16 0.15
Matches are distributed among these distances:
32 1 0.01
33 3 0.02
34 21 0.13
35 23 0.14
36 4 0.03
37 20 0.13
38 3 0.02
39 4 0.03
40 29 0.18
42 51 0.32
ACGTcount: A:0.22, C:0.23, G:0.15, T:0.40
Consensus pattern (42 bp):
TTTTCCTTTATCCTCAAAGAGCAGGACCCATTTCATTTCCTT
Found at i:45779 original size:188 final size:189
Alignment explanation
Indices: 45446--45894 Score: 569
Period size: 188 Copynumber: 2.3 Consensus size: 189
45436 GTACTTTATT
* * * * *
45446 TCCTTTTCTCTTTTGTCCTCAAAGAGCATGACACATTTAATTTCCTTCTTTTCTTTTGTCCTCAA
1 TCCTTTTC-C-TTTGTCCTCAAAGAGCAGGACGCATTTTATTTCCTT-TTTTCCTTTATCCTCAA
** * * *
45511 AGAATAGGACGTATTTTATTTCCTTTTTTCCTTTTTCCTCGAAGAGCAGGATGTACTCCTTTTTC
63 AGAATAGGAC----TCCATTTCATTTTTTCCTTTTTCCTCGAAGAGCAAGATATACTCCTTTTTC
* * * *
45576 CTTTTTCCTCAAGGAGCAGGACCCATTTCATTCTCTTTGCCTTTATCCTTGAAGAGCAAGACGTA
124 CTTTGTCCACAAGGAGCAGGACCCATTTCATTCTCTTTGCCTTTATCCTCGAAGAGCAAGACATA
45641 C
189 C
* *
45642 TCCTTTTCCTTTGTCCTCAAAGAGCAGGACGCATTTTATTTCCTTTTTTCCTTTATCCTTAAGGA
1 TCCTTTTCCTTTGTCCTCAAAGAGCAGGACGCATTTTATTTCCTTTTTTCCTTTATCCTCAAAGA
* *
45707 GTAGGAC-CCATTTCATTTTTTCCTTTGTT-CTCGAAGAGCAAGATATACTCTTTTTTCCTTTGT
66 ATAGGACTCCATTTCATTTTTTCCTTT-TTCCTCGAAGAGCAAGATATACTCCTTTTTCCTTTGT
* * * * * *
45770 CCACAAGGAGTATGACCCATTTCATTCTCTTTTCCTTTGTCCTCGAAGAGTAGGACATAC
130 CCACAAGGAGCAGGACCCATTTCATTCTCTTTGCCTTTATCCTCGAAGAGCAAGACATAC
** *
45830 TCCTTTTAGTTTGTCCACAAAGAGCAGGACGCATTTTATTTCCTTTTTTCCTTTATCCTCAAAGA
1 TCCTTTTCCTTTGTCCTCAAAGAGCAGGACGCATTTTATTTCCTTTTTTCCTTTATCCTCAAAGA
45895 GCAGGATGTA
Statistics
Matches: 223, Mismatches: 29, Indels: 10
0.85 0.11 0.04
Matches are distributed among these distances:
188 157 0.70
189 2 0.01
193 22 0.10
194 33 0.15
195 1 0.00
196 8 0.04
ACGTcount: A:0.21, C:0.24, G:0.14, T:0.41
Consensus pattern (189 bp):
TCCTTTTCCTTTGTCCTCAAAGAGCAGGACGCATTTTATTTCCTTTTTTCCTTTATCCTCAAAGA
ATAGGACTCCATTTCATTTTTTCCTTTTTCCTCGAAGAGCAAGATATACTCCTTTTTCCTTTGTC
CACAAGGAGCAGGACCCATTTCATTCTCTTTGCCTTTATCCTCGAAGAGCAAGACATAC
Found at i:45920 original size:35 final size:37
Alignment explanation
Indices: 45874--45977 Score: 122
Period size: 35 Copynumber: 2.8 Consensus size: 37
45864 TTTATTTCCT
* *
45874 TTTTTCCTTTATCCTCAAAGAGCAGGATG-TAC-TCC
1 TTTTTCTTTTATCCTCAAAGAGTAGGATGTTACATCC
* *
45909 TTTTTCTTTTATCCTCAAAGAGTAGGACCTGTTTCATTC
1 TTTTTCTTTTATCCTCAAAGAGTAGGA--TGTTACATCC
*
45948 TCTTTTCTTTTGTCCTCAAAGAGTAGGATG
1 T-TTTTCTTTTATCCTCAAAGAGTAGGATG
45978 CCCCTTCTTT
Statistics
Matches: 59, Mismatches: 5, Indels: 7
0.83 0.07 0.10
Matches are distributed among these distances:
35 25 0.42
37 2 0.03
38 4 0.07
39 3 0.05
40 25 0.42
ACGTcount: A:0.21, C:0.21, G:0.15, T:0.42
Consensus pattern (37 bp):
TTTTTCTTTTATCCTCAAAGAGTAGGATGTTACATCC
Found at i:45977 original size:75 final size:75
Alignment explanation
Indices: 45644--45976 Score: 287
Period size: 75 Copynumber: 4.4 Consensus size: 75
45634 AGACGTACTC
* * ** *
45644 CTTTTCCTTTGTCCTCAAAGAGCAGGACGCATTTTATTTCCTTTTTTCCTTTATCCTTAAGGAGT
1 CTTTTCCTTTGTCCTCAAAGAGCA-G--G-A-TATA-CTCC-TTTTTCCTTTATCCACAAAGAGT
45709 AGGACCCATTTCA-T-T
59 AGGACCCATTTCATTCT
* * * * * * *
45724 -TTTTCCTTTGTTCTCGAAGAGCAAGATATACTCTTTTTTCCTTTGTCCACAAGGAGTATGACCC
1 CTTTTCCTTTGTCCTCAAAGAGCAGGATATACTCCTTTTTCCTTTATCCACAAAGAGTAGGACCC
45788 ATTTCATTCT
66 ATTTCATTCT
* * * ** * * *
45798 CTTTTCCTTTGTCCTCGAAGAGTAGGACATACTCC-TTTTAGTTTGTCCACAAAGAGCAGGACGC
1 CTTTTCCTTTGTCCTCAAAGAGCAGGATATACTCCTTTTTCCTTTATCCACAAAGAGTAGGACCC
*
45862 ATTTTATTTCCT
66 ATTTCA-TT-CT
* * * * * *
45874 TTTTTCCTTTATCCTCAAAGAGCAGGATGTACTCCTTTTTCTTTTATCCTCAAAGAGTAGGACCT
1 CTTTTCCTTTGTCCTCAAAGAGCAGGATATACTCCTTTTTCCTTTATCCACAAAGAGTAGGACCC
*
45939 GTTTCATTCT
66 ATTTCATTCT
* *
45949 CTTTTCTTTTGTCCTCAAAGAGTAGGAT
1 CTTTTCCTTTGTCCTCAAAGAGCAGGAT
45977 GCCCCTTCTT
Statistics
Matches: 206, Mismatches: 41, Indels: 17
0.78 0.16 0.06
Matches are distributed among these distances:
72 32 0.16
73 3 0.01
74 32 0.16
75 58 0.28
76 34 0.17
77 26 0.13
79 21 0.10
ACGTcount: A:0.21, C:0.23, G:0.15, T:0.41
Consensus pattern (75 bp):
CTTTTCCTTTGTCCTCAAAGAGCAGGATATACTCCTTTTTCCTTTATCCACAAAGAGTAGGACCC
ATTTCATTCT
Found at i:49079 original size:51 final size:51
Alignment explanation
Indices: 49001--49168 Score: 165
Period size: 51 Copynumber: 3.3 Consensus size: 51
48991 ATTTTTGAAG
* * * *
49001 GGATACTCCAATCTCAATTTTTATTTCTAAAACATCGATTTTGTACAATCGA
1 GGATACTCCAACCCCGA-TTTTATTTCTAAAACATCGATTTTCTACAATCGA
* ** * * * * *
49053 GGATATTTTAACCTCGATTTTATTTCTAAAATATCAATTTTCCACAATCGG
1 GGATACTCCAACCCCGATTTTATTTCTAAAACATCGATTTTCTACAATCGA
* * * * *
49104 GGATACTCCAACCCCGATTTTATTTTTGAAACATTGATTTTTTACCATCGA
1 GGATACTCCAACCCCGATTTTATTTCTAAAACATCGATTTTCTACAATCGA
*
49155 GGATACTCTAACCC
1 GGATACTCCAACCC
49169 TGTTATTTCC
Statistics
Matches: 92, Mismatches: 24, Indels: 1
0.79 0.21 0.01
Matches are distributed among these distances:
51 80 0.87
52 12 0.13
ACGTcount: A:0.30, C:0.21, G:0.11, T:0.38
Consensus pattern (51 bp):
GGATACTCCAACCCCGATTTTATTTCTAAAACATCGATTTTCTACAATCGA
Found at i:49196 original size:79 final size:79
Alignment explanation
Indices: 49106--49334 Score: 282
Period size: 79 Copynumber: 2.9 Consensus size: 79
49096 ACAATCGGGG
* * * * * *
49106 ATACTCCAACCCCGATTTTATTTTTGAAACATTGATTTTTTACCATCGAGGATACTCTAACCCTG
1 ATACTCCAACCCCGATTTTATTTCTAAAACATCGATTTTTCATCATCGGGGATACTCTAACCCTG
*
49171 TTATTTCCT-AGGGA
66 TTATTT-CTGAGGAA
* * * *
49185 ATACTCTAACCCC-AGTTTTATTTCTAAAACATCGATTTTCCATAATCGGGGATACTCCAACCCT
1 ATACTCCAACCCCGA-TTTTATTTCTAAAACATCGATTTTTCATCATCGGGGATACTCTAACCCT
*
49249 ATTATTTCTGAGGAA
65 GTTATTTCTGAGGAA
* * * *
49264 ACACTCCAACCTCGATTTTATTTCTAAAACACCGATTCTTCATCATCGGGGATACTCTAACCCTG
1 ATACTCCAACCCCGATTTTATTTCTAAAACATCGATTTTTCATCATCGGGGATACTCTAACCCTG
49329 TTATTT
66 TTATTT
49335 TCGAAAGGAT
Statistics
Matches: 126, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
78 3 0.02
79 122 0.97
80 1 0.01
ACGTcount: A:0.28, C:0.25, G:0.11, T:0.36
Consensus pattern (79 bp):
ATACTCCAACCCCGATTTTATTTCTAAAACATCGATTTTTCATCATCGGGGATACTCTAACCCTG
TTATTTCTGAGGAA
Found at i:49349 original size:79 final size:77
Alignment explanation
Indices: 49106--49371 Score: 259
Period size: 79 Copynumber: 3.4 Consensus size: 77
49096 ACAATCGGGG
* * * * * * *
49106 ATACTCCAACCCCGATTTTATTTTTGAAACATTGATTTTTTACCATCGAGGATACTCTAACCCTG
1 ATACTCCAACCTCGATTTTATTTCTAAAACATCGA-TTTTCATCATCGGGGATACTCTAACCCTG
* *
49171 TTATTTCCTAGGGA
65 TTATTT-CGAAGGA
* * * *
49185 ATACTCTAACC-CCAGTTTTATTTCTAAAACATCGATTTTCCATAATCGGGGATACTCCAACCCT
1 ATACTCCAACCTCGA-TTTTATTTCTAAAACATCGATTTT-CATCATCGGGGATACTCTAACCCT
*
49249 ATTATTTCTG-AGGAA
64 GTTATTTC-GAAGG-A
* *
49264 ACACTCCAACCTCGATTTTATTTCTAAAACACCGATTCTTCATCATCGGGGATACTCTAACCCTG
1 ATACTCCAACCTCGATTTTATTTCTAAAACATCGATT-TTCATCATCGGGGATACTCTAACCCTG
49329 TTATTTTCGAAAGG-
65 TTA-TTTCG-AAGGA
* * *
49343 ATACTCCAACCTTGTTTTTATCTCTAAAA
1 ATACTCCAACCTCGATTTTATTTCTAAAA
49372 TATTAAATTT
Statistics
Matches: 154, Mismatches: 24, Indels: 18
0.79 0.12 0.09
Matches are distributed among these distances:
78 9 0.06
79 134 0.87
80 8 0.05
81 3 0.02
ACGTcount: A:0.29, C:0.24, G:0.11, T:0.36
Consensus pattern (77 bp):
ATACTCCAACCTCGATTTTATTTCTAAAACATCGATTTTCATCATCGGGGATACTCTAACCCTGT
TATTTCGAAGGA
Found at i:50408 original size:34 final size:35
Alignment explanation
Indices: 50370--50436 Score: 102
Period size: 37 Copynumber: 1.9 Consensus size: 35
50360 CCTTACAACA
50370 CTATC-TTTC-AAGGCTAAGATAGAAACCTCTCTCT
1 CTATCTTTTCAAAGGCTAAGATAG-AACCTCTCTCT
50404 CTATCTTTTTCAAAGGCTAAGATAGAACCTCTC
1 CTATC-TTTTCAAAGGCTAAGATAGAACCTCTC
50437 AATCACTTAG
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
34 5 0.17
36 12 0.40
37 13 0.43
ACGTcount: A:0.30, C:0.25, G:0.12, T:0.33
Consensus pattern (35 bp):
CTATCTTTTCAAAGGCTAAGATAGAACCTCTCTCT
Found at i:50912 original size:13 final size:13
Alignment explanation
Indices: 50894--50919 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
50884 CAATTTTTTG
50894 TGTATCGATACAT
1 TGTATCGATACAT
50907 TGTATCGATACAT
1 TGTATCGATACAT
50920 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:50984 original size:21 final size:21
Alignment explanation
Indices: 50958--51033 Score: 100
Period size: 21 Copynumber: 3.7 Consensus size: 21
50948 CTGCCAAGAA
50958 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACATCTTTTTC
****
50979 ATGTATCGATACAT-TGCAAC
1 ATGTATCGATACATCTTTTTC
50999 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACATCTTTTTC
*
51020 ATATATCGATACAT
1 ATGTATCGATACAT
51034 TGCAACATGT
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
20 16 0.36
21 29 0.64
ACGTcount: A:0.30, C:0.18, G:0.11, T:0.41
Consensus pattern (21 bp):
ATGTATCGATACATCTTTTTC
Found at i:51003 original size:20 final size:20
Alignment explanation
Indices: 50978--51051 Score: 94
Period size: 20 Copynumber: 3.6 Consensus size: 20
50968 ACATCTTTTT
50978 CATGTATCGATACATTGCAA
1 CATGTATCGATACATTGCAA
****
50998 CATGTATCGATACATCTTTTT
1 CATGTATCGATACAT-TGCAA
*
51019 CATATATCGATACATTGCAA
1 CATGTATCGATACATTGCAA
51039 CATGTATCGATAC
1 CATGTATCGATAC
51052 TTTGAATTGT
Statistics
Matches: 43, Mismatches: 10, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
20 28 0.65
21 15 0.35
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.35
Consensus pattern (20 bp):
CATGTATCGATACATTGCAA
Found at i:51015 original size:41 final size:41
Alignment explanation
Indices: 50958--51051 Score: 179
Period size: 41 Copynumber: 2.3 Consensus size: 41
50948 CTGCCAAGAA
*
50958 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTCATATATCGATACATTGCAAC
50999 ATGTATCGATACATCTTTTTCATATATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTCATATATCGATACATTGCAAC
51040 ATGTATCGATAC
1 ATGTATCGATAC
51052 TTTGAATTGT
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 52 1.00
ACGTcount: A:0.31, C:0.19, G:0.12, T:0.38
Consensus pattern (41 bp):
ATGTATCGATACATCTTTTTCATATATCGATACATTGCAAC
Found at i:52826 original size:13 final size:13
Alignment explanation
Indices: 52808--52832 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
52798 ACTGAAGCAA
52808 TGTATCGATACAT
1 TGTATCGATACAT
52821 TGTATCGATACA
1 TGTATCGATACA
52833 ATCTGGAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:55992 original size:34 final size:35
Alignment explanation
Indices: 55954--56020 Score: 102
Period size: 37 Copynumber: 1.9 Consensus size: 35
55944 CCTTACAACA
55954 CTATC-TTTC-AAGGCTAAGATAGAAACCTCTCTCT
1 CTATCTTTTCAAAGGCTAAGATAG-AACCTCTCTCT
55988 CTATCTTTTTCAAAGGCTAAGATAGAACCTCTC
1 CTATC-TTTTCAAAGGCTAAGATAGAACCTCTC
56021 AATCACTTAG
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
34 5 0.17
36 12 0.40
37 13 0.43
ACGTcount: A:0.30, C:0.25, G:0.12, T:0.33
Consensus pattern (35 bp):
CTATCTTTTCAAAGGCTAAGATAGAACCTCTCTCT
Found at i:56496 original size:13 final size:13
Alignment explanation
Indices: 56478--56503 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
56468 CAATTTTTTG
56478 TGTATCGATACAT
1 TGTATCGATACAT
56491 TGTATCGATACAT
1 TGTATCGATACAT
56504 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:56568 original size:21 final size:21
Alignment explanation
Indices: 56542--56617 Score: 100
Period size: 21 Copynumber: 3.7 Consensus size: 21
56532 CTGCCAAGAA
56542 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACATCTTTTTC
****
56563 ATGTATCGATACAT-TGCAAC
1 ATGTATCGATACATCTTTTTC
56583 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACATCTTTTTC
*
56604 ATATATCGATACAT
1 ATGTATCGATACAT
56618 TGCAACATGT
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
20 16 0.36
21 29 0.64
ACGTcount: A:0.30, C:0.18, G:0.11, T:0.41
Consensus pattern (21 bp):
ATGTATCGATACATCTTTTTC
Found at i:56587 original size:20 final size:20
Alignment explanation
Indices: 56562--56635 Score: 94
Period size: 20 Copynumber: 3.6 Consensus size: 20
56552 ACATCTTTTT
56562 CATGTATCGATACATTGCAA
1 CATGTATCGATACATTGCAA
****
56582 CATGTATCGATACATCTTTTT
1 CATGTATCGATACAT-TGCAA
*
56603 CATATATCGATACATTGCAA
1 CATGTATCGATACATTGCAA
56623 CATGTATCGATAC
1 CATGTATCGATAC
56636 TTTGAATTGT
Statistics
Matches: 43, Mismatches: 10, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
20 28 0.65
21 15 0.35
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.35
Consensus pattern (20 bp):
CATGTATCGATACATTGCAA
Found at i:56599 original size:41 final size:41
Alignment explanation
Indices: 56542--56635 Score: 179
Period size: 41 Copynumber: 2.3 Consensus size: 41
56532 CTGCCAAGAA
*
56542 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTCATATATCGATACATTGCAAC
56583 ATGTATCGATACATCTTTTTCATATATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTCATATATCGATACATTGCAAC
56624 ATGTATCGATAC
1 ATGTATCGATAC
56636 TTTGAATTGT
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 52 1.00
ACGTcount: A:0.31, C:0.19, G:0.12, T:0.38
Consensus pattern (41 bp):
ATGTATCGATACATCTTTTTCATATATCGATACATTGCAAC
Found at i:57396 original size:11 final size:12
Alignment explanation
Indices: 57374--57398 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
57364 TTCTTCTTTT
57374 TTTCATCAAAAA
1 TTTCATCAAAAA
57386 TTTCATCAAAAA
1 TTTCATCAAAAA
57398 T
1 T
57399 AGTTTTTATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.48, C:0.16, G:0.00, T:0.36
Consensus pattern (12 bp):
TTTCATCAAAAA
Found at i:60000 original size:13 final size:13
Alignment explanation
Indices: 59982--60011 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
59972 GATACATGGG
*
59982 ACATTGTATCTAT
1 ACATTGTATCGAT
59995 ACATTGTATCGAT
1 ACATTGTATCGAT
60008 ACAT
1 ACAT
60012 AGTAAAATGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.33, C:0.17, G:0.10, T:0.40
Consensus pattern (13 bp):
ACATTGTATCGAT
Found at i:60008 original size:33 final size:33
Alignment explanation
Indices: 59966--60034 Score: 93
Period size: 33 Copynumber: 2.1 Consensus size: 33
59956 CTAAGTGAAA
* * * *
59966 TGTATCGATACATGGGACATTGTATCTATACAT
1 TGTATCGATACATAGGAAAATGTATCGATACAT
*
59999 TGTATCGATACATAGTAAAATGTATCGATACAT
1 TGTATCGATACATAGGAAAATGTATCGATACAT
60032 TGT
1 TGT
60035 GCCCAATAGC
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.33, C:0.13, G:0.17, T:0.36
Consensus pattern (33 bp):
TGTATCGATACATAGGAAAATGTATCGATACAT
Found at i:60471 original size:23 final size:23
Alignment explanation
Indices: 60427--60471 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
60417 TGCATTCAAC
*
60427 TTTGGGTTACAATCTCTTAAGAA
1 TTTGGGGTACAATCTCTTAAGAA
*
60450 TTTGGGGTATAAT-TCTTGAAGA
1 TTTGGGGTACAATCTCTT-AAGA
60472 GATTGAGAGG
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 4 0.21
23 15 0.79
ACGTcount: A:0.29, C:0.09, G:0.22, T:0.40
Consensus pattern (23 bp):
TTTGGGGTACAATCTCTTAAGAA
Found at i:63807 original size:79 final size:79
Alignment explanation
Indices: 63706--63885 Score: 213
Period size: 79 Copynumber: 2.3 Consensus size: 79
63696 AAATTTAATA
* * ** * *
63706 TTTTGGAGATAAAGAT-GGGGTTGGAGTATCCCCTCAGAAATAACG-GGATTGGAGTATTCTCGA
1 TTTTGGAAATAAA-ATCGGGGTTGGAGTATCCCCTCAAAAATAACGAGG-TTAAAGTATCCCCGA
* *
63769 TTGT-GAAAAATTGGTG
64 TTGTAG-AAAATCGATG
* *
63785 TTTTGGAAATAAAATCGAGGTTGGAGTATCTCCTCAAAAATAACGAGGTTAAAGTATCCCCGATT
1 TTTTGGAAATAAAATCGGGGTTGGAGTATCCCCTCAAAAATAACGAGGTTAAAGTATCCCCGATT
63850 GTAGAAAATCGATG
66 GTAGAAAATCGATG
*
63864 TTTTAGAAATAAAATCGGGGTT
1 TTTTGGAAATAAAATCGGGGTT
63886 AGGGTGTCCC
Statistics
Matches: 86, Mismatches: 12, Indels: 6
0.83 0.12 0.06
Matches are distributed among these distances:
78 2 0.02
79 81 0.94
80 3 0.03
ACGTcount: A:0.33, C:0.11, G:0.26, T:0.30
Consensus pattern (79 bp):
TTTTGGAAATAAAATCGGGGTTGGAGTATCCCCTCAAAAATAACGAGGTTAAAGTATCCCCGATT
GTAGAAAATCGATG
Found at i:63896 original size:51 final size:50
Alignment explanation
Indices: 63831--63997 Score: 210
Period size: 51 Copynumber: 3.3 Consensus size: 50
63821 AAAATAACGA
* *
63831 GGTTAAAGTATCCCCGATTGTAGAAAATCGATGTTTTAGAAATAAAATCGG
1 GGTTAGAGTATCCCCGATTGTGGAAAAT-GATGTTTTAGAAATAAAATCGG
* * * *
63882 GGTTAGGGTGTCCCCGA-TGATGGAAAATTGGTGTTTTGGAAATAAAATCGG
1 GGTTAGAGTATCCCCGATTG-TGGAAAA-TGATGTTTTAGAAATAAAATCGG
* *
63933 GGTTAGAGTATCCCCGATTGTGGAAAATTAGTATTTTAGAAATAAAATCGG
1 GGTTAGAGTATCCCCGATTGTGGAAAATGA-TGTTTTAGAAATAAAATCGG
*
63984 GGTTGGAGTATCCC
1 GGTTAGAGTATCCC
63998 TTCAAAAATA
Statistics
Matches: 99, Mismatches: 13, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
50 3 0.03
51 93 0.94
52 3 0.03
ACGTcount: A:0.32, C:0.11, G:0.27, T:0.30
Consensus pattern (50 bp):
GGTTAGAGTATCCCCGATTGTGGAAAATGATGTTTTAGAAATAAAATCGG
Found at i:64100 original size:78 final size:79
Alignment explanation
Indices: 63930--64261 Score: 443
Period size: 78 Copynumber: 4.2 Consensus size: 79
63920 GAAATAAAAT
* * * * * * * *
63930 CGGGGTTAGAGTATCCCCGATTGTGGAAAATTAGTATTTTAGAAATAAAATCGGGGTTGGAGTAT
1 CGGGGTTGGAGTATCCCCGATTGTGAAAAATCAATGTTTTGGAAATAAAACCAGGGTTGGAGTAT
63995 CCCTTCAAAAATAA
66 CCCTTCAAAAATAA
*
64009 CGAGGTTGGAGTATCCCCGATTGTGAAAAATCAATGTTTTGGAAATAAAACCAGGGTTGGAGTAT
1 CGGGGTTGGAGTATCCCCGATTGTGAAAAATCAATGTTTTGGAAATAAAACCAGGGTTGGAGTAT
64074 CCC-TCAAAAATAA
66 CCCTTCAAAAATAA
* * * * *
64087 CGGGGTTGGAGTATCTCCAATTGTGAAAAATCGATGTTTTGAAAATAAAACCAGGGTTGGTGTAT
1 CGGGGTTGGAGTATCCCCGATTGTGAAAAATCAATGTTTTGGAAATAAAACCAGGGTTGGAGTAT
* **
64152 CCTTTCTGAAATAA
66 CCCTTCAAAAATAA
* * * **
64166 TGGGGTTGGAGTAT-CCCGATTGTGTAAAATCAATGTTTTGGATATAAAACTGGGGTTGGAGTAT
1 CGGGGTTGGAGTATCCCCGATTGTGAAAAATCAATGTTTTGGAAATAAAACCAGGGTTGGAGTAT
64230 CCCTTCAAAAATAA
66 CCCTTCAAAAATAA
*
64244 CGAGGTTGGAGTATCCCC
1 CGGGGTTGGAGTATCCCC
64262 TTGGAAATAA
Statistics
Matches: 218, Mismatches: 33, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
78 135 0.62
79 83 0.38
ACGTcount: A:0.32, C:0.14, G:0.25, T:0.29
Consensus pattern (79 bp):
CGGGGTTGGAGTATCCCCGATTGTGAAAAATCAATGTTTTGGAAATAAAACCAGGGTTGGAGTAT
CCCTTCAAAAATAA
Found at i:64117 original size:157 final size:157
Alignment explanation
Indices: 63930--64261 Score: 445
Period size: 157 Copynumber: 2.1 Consensus size: 157
63920 GAAATAAAAT
* * * * *
63930 CGGGGTTAGAGTATCCCCGATTGTGGAAAATTAGTAT-TTTAG-AAATAAAATCGGGGTTGGAGT
1 CGGGGTTGGAGTATCCCCAATTGT-GAAAAATAG-ATGTTTAGAAAATAAAACCAGGGTTGGAGT
63993 ATCCCTTCAAAAATAACGAGGTTGGAGTATCCCCGATTGTGAAAAATCAATGTTTTGGAAATAAA
64 ATCCCTTCAAAAATAACGAGGTTGGAGTAT-CCCGATTGTGAAAAATCAATGTTTTGGAAATAAA
64058 ACCAGGGTTGGAGTATCCC-TCAAAAATAA
128 ACCAGGGTTGGAGTATCCCTTCAAAAATAA
* * * *
64087 CGGGGTTGGAGTATCTCCAATTGTGAAAAATCGATGTTTTGAAAATAAAACCAGGGTTGGTGTAT
1 CGGGGTTGGAGTATCCCCAATTGTGAAAAATAGATGTTTAGAAAATAAAACCAGGGTTGGAGTAT
* ** * * * * *
64152 CCTTTCTGAAATAATGGGGTTGGAGTATCCCGATTGTGTAAAATCAATGTTTTGGATATAAAACT
66 CCCTTCAAAAATAACGAGGTTGGAGTATCCCGATTGTGAAAAATCAATGTTTTGGAAATAAAACC
*
64217 GGGGTTGGAGTATCCCTTCAAAAATAA
131 AGGGTTGGAGTATCCCTTCAAAAATAA
*
64244 CGAGGTTGGAGTATCCCC
1 CGGGGTTGGAGTATCCCC
64262 TTGGAAATAA
Statistics
Matches: 152, Mismatches: 20, Indels: 6
0.85 0.11 0.03
Matches are distributed among these distances:
155 2 0.01
156 60 0.39
157 90 0.59
ACGTcount: A:0.32, C:0.14, G:0.25, T:0.29
Consensus pattern (157 bp):
CGGGGTTGGAGTATCCCCAATTGTGAAAAATAGATGTTTAGAAAATAAAACCAGGGTTGGAGTAT
CCCTTCAAAAATAACGAGGTTGGAGTATCCCGATTGTGAAAAATCAATGTTTTGGAAATAAAACC
AGGGTTGGAGTATCCCTTCAAAAATAA
Found at i:64250 original size:28 final size:27
Alignment explanation
Indices: 64218--64287 Score: 88
Period size: 28 Copynumber: 2.5 Consensus size: 27
64208 TATAAAACTG
64218 GGGTTGGAGTATCCCTTCAAAAATAAC-
1 GGGTTGGAGTATCCCTT-AAAAATAACA
**
64245 GAGGTTGGAGTATCCCCTTGGAAATAACA
1 G-GGTTGGAGTAT-CCCTTAAAAATAACA
64274 GGGTTGGAGTATCC
1 GGGTTGGAGTATCC
64288 TCGATTGTGA
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
27 3 0.08
28 29 0.76
29 6 0.16
ACGTcount: A:0.29, C:0.17, G:0.29, T:0.26
Consensus pattern (27 bp):
GGGTTGGAGTATCCCTTAAAAATAACA
Found at i:64330 original size:107 final size:106
Alignment explanation
Indices: 64159--64368 Score: 296
Period size: 107 Copynumber: 2.0 Consensus size: 106
64149 TATCCTTTCT
** * * * * *
64159 GAAATAATGGGGTTGGAGTATCCCGATTGTGTAAAATCAATGTTTTGGATATAAAACTGGGGTTG
1 GAAATAACAGGGTTGGAGTATCCCGATTGTGAAAAATCAATGTTTTGGAAACAAAACCGAGGTTG
* *
64224 GAGTATCCCTTCAAAAATAA-CGAGGTTGGAGTATCCCCTTG
66 GAGTATCCCCTCAAAAACAACCG-GGTTGGAGTATCCCCTTG
*
64265 GAAATAACAGGGTTGGAGTATCCTCGATTGTGAAAAATCGATGTTTTGGAAACAAAACCGAGGTT
1 GAAATAACAGGGTTGGAGTATCC-CGATTGTGAAAAATCAATGTTTTGGAAACAAAACCGAGGTT
*
64330 GGAGTATCCCCTCGAAAACAACCGGGTTGGAGTATCCCC
65 GGAGTATCCCCTCAAAAACAACCGGGTTGGAGTATCCCC
64369 AATTGCGAAA
Statistics
Matches: 91, Mismatches: 11, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
106 21 0.23
107 68 0.75
108 2 0.02
ACGTcount: A:0.31, C:0.16, G:0.26, T:0.27
Consensus pattern (106 bp):
GAAATAACAGGGTTGGAGTATCCCGATTGTGAAAAATCAATGTTTTGGAAACAAAACCGAGGTTG
GAGTATCCCCTCAAAAACAACCGGGTTGGAGTATCCCCTTG
Found at i:66789 original size:30 final size:30
Alignment explanation
Indices: 66753--66846 Score: 100
Period size: 30 Copynumber: 3.5 Consensus size: 30
66743 TACATTGAGA
66753 AATGTATCGATACATCTGGGTAAAATCTAG
1 AATGTATCGATACATCTGGGTAAAATCTAG
**
66783 AATGTATCGAT--A--T-AAT-AAA-C---
1 AATGTATCGATACATCTGGGTAAAATCTAG
66803 AATGTATCGATACATCTGGGTAAAATCTAG
1 AATGTATCGATACATCTGGGTAAAATCTAG
66833 AATGTATCGATACA
1 AATGTATCGATACA
66847 ATGAACAATG
Statistics
Matches: 50, Mismatches: 4, Indels: 20
0.68 0.05 0.27
Matches are distributed among these distances:
20 11 0.22
22 1 0.02
23 1 0.02
24 4 0.08
25 2 0.04
26 4 0.08
27 1 0.02
28 1 0.02
30 25 0.50
ACGTcount: A:0.40, C:0.13, G:0.17, T:0.30
Consensus pattern (30 bp):
AATGTATCGATACATCTGGGTAAAATCTAG
Found at i:66807 original size:50 final size:50
Alignment explanation
Indices: 66732--66866 Score: 218
Period size: 50 Copynumber: 2.7 Consensus size: 50
66722 AAAAATGCCT
* *
66732 GAATGTATCGATACATTGAGA-AATGTATCGATACATCTGGGTAAAATCTA
1 GAATGTATCGATACAAT-AAACAATGTATCGATACATCTGGGTAAAATCTA
*
66782 GAATGTATCGATATAATAAACAATGTATCGATACATCTGGGTAAAATCTA
1 GAATGTATCGATACAATAAACAATGTATCGATACATCTGGGTAAAATCTA
*
66832 GAATGTATCGATACAATGAACAATGTATCGATACA
1 GAATGTATCGATACAATAAACAATGTATCGATACA
66867 AATTATGGGA
Statistics
Matches: 79, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
49 2 0.03
50 77 0.97
ACGTcount: A:0.41, C:0.13, G:0.18, T:0.29
Consensus pattern (50 bp):
GAATGTATCGATACAATAAACAATGTATCGATACATCTGGGTAAAATCTA
Found at i:70522 original size:20 final size:21
Alignment explanation
Indices: 70497--70535 Score: 71
Period size: 20 Copynumber: 1.9 Consensus size: 21
70487 ATTTTCTAGA
70497 ATGTATCGATACAT-TGAATG
1 ATGTATCGATACATGTGAATG
70517 ATGTATCGATACATGTGAA
1 ATGTATCGATACATGTGAA
70536 AAAACCTAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 14 0.78
21 4 0.22
ACGTcount: A:0.36, C:0.10, G:0.21, T:0.33
Consensus pattern (21 bp):
ATGTATCGATACATGTGAATG
Found at i:70589 original size:13 final size:13
Alignment explanation
Indices: 70567--70603 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
70557 AATGTTCTAA
70567 GTATCGATACACT
1 GTATCGATACACT
* *
70580 GTATCAATACATT
1 GTATCGATACACT
70593 GTATCGATACA
1 GTATCGATACA
70604 GGGTTACTAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.35, C:0.19, G:0.14, T:0.32
Consensus pattern (13 bp):
GTATCGATACACT
Found at i:73192 original size:19 final size:19
Alignment explanation
Indices: 73168--73223 Score: 76
Period size: 19 Copynumber: 2.9 Consensus size: 19
73158 TGTAACGATA
73168 CATTGTATCGATACATGCT
1 CATTGTATCGATACATGCT
**
73187 CATTGTATCGATACACACT
1 CATTGTATCGATACATGCT
*
73206 CAATTGTATCAATACATG
1 C-ATTGTATCGATACATG
73224 AAATTGGCAG
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
19 18 0.58
20 13 0.42
ACGTcount: A:0.32, C:0.21, G:0.12, T:0.34
Consensus pattern (19 bp):
CATTGTATCGATACATGCT
Found at i:74052 original size:21 final size:21
Alignment explanation
Indices: 74028--74070 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
74018 CATCAATTCC
74028 TAGAGCTTACA-AAAAATGTTT
1 TAGAG-TTACATAAAAATGTTT
*
74049 TAGAGTTACATATAAATGTTT
1 TAGAGTTACATAAAAATGTTT
74070 T
1 T
74071 TCAAGTATTC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 5 0.25
21 15 0.75
ACGTcount: A:0.40, C:0.07, G:0.14, T:0.40
Consensus pattern (21 bp):
TAGAGTTACATAAAAATGTTT
Found at i:74337 original size:33 final size:33
Alignment explanation
Indices: 74280--74344 Score: 85
Period size: 33 Copynumber: 2.0 Consensus size: 33
74270 TATCACTGTT
* * *
74280 TGTATCGATACATAGGACATTGTATCGATACAA
1 TGTATCGATACATAGGAAAATGTATCAATACAA
* *
74313 TGTATCGATATATAGTAAAATGTATCAATACA
1 TGTATCGATACATAGGAAAATGTATCAATACA
74345 TTGAACCCAA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
33 27 1.00
ACGTcount: A:0.40, C:0.12, G:0.15, T:0.32
Consensus pattern (33 bp):
TGTATCGATACATAGGAAAATGTATCAATACAA
Found at i:75091 original size:33 final size:33
Alignment explanation
Indices: 75045--75111 Score: 100
Period size: 33 Copynumber: 2.0 Consensus size: 33
75035 TTACCACTGT
75045 TTATATCGATACAT-AGGACATTGTATCGATACA
1 TTATATCGATACATGAGGA-ATTGTATCGATACA
* *
75078 TTATATCGCTACATGATGAATTGTATCGATACA
1 TTATATCGATACATGAGGAATTGTATCGATACA
75111 T
1 T
75112 GATGAATTGT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
33 28 0.90
34 3 0.10
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.36
Consensus pattern (33 bp):
TTATATCGATACATGAGGAATTGTATCGATACA
Found at i:75110 original size:20 final size:20
Alignment explanation
Indices: 75081--75131 Score: 93
Period size: 20 Copynumber: 2.5 Consensus size: 20
75071 CGATACATTA
*
75081 TATCGCTACATGATGAATTG
1 TATCGATACATGATGAATTG
75101 TATCGATACATGATGAATTG
1 TATCGATACATGATGAATTG
75121 TATCGATACAT
1 TATCGATACAT
75132 TGCTTATAAC
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.33, C:0.14, G:0.18, T:0.35
Consensus pattern (20 bp):
TATCGATACATGATGAATTG
Found at i:81314 original size:13 final size:13
Alignment explanation
Indices: 81296--81322 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
81286 ACAACATTCC
81296 TTGTATCGATACA
1 TTGTATCGATACA
81309 TTGTATCGATACA
1 TTGTATCGATACA
81322 T
1 T
81323 GGGTTACTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:83861 original size:19 final size:19
Alignment explanation
Indices: 83832--83893 Score: 79
Period size: 20 Copynumber: 3.2 Consensus size: 19
83822 TGTTTTGTAT
*
83832 TGATACATTGTATCAATACA
1 TGAT-CATTGTATCGATACA
*
83852 TGTTCATTGTATCGATACA
1 TGATCATTGTATCGATACA
*
83871 TGGATAATTGTATCGATACA
1 T-GATCATTGTATCGATACA
83891 TGA
1 TGA
83894 AACTGGCAGT
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
19 17 0.46
20 20 0.54
ACGTcount: A:0.34, C:0.13, G:0.16, T:0.37
Consensus pattern (19 bp):
TGATCATTGTATCGATACA
Found at i:83946 original size:20 final size:20
Alignment explanation
Indices: 83921--83974 Score: 83
Period size: 20 Copynumber: 2.7 Consensus size: 20
83911 CTACCAATGT
83921 TTGTATCGATACAT-AGGACA
1 TTGTATCGATACATGAGGA-A
*
83941 TTGTATCGATACATGATGAA
1 TTGTATCGATACATGAGGAA
83961 TTGTATCGATACAT
1 TTGTATCGATACAT
83975 TGCTTATAAC
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
20 29 0.91
21 3 0.09
ACGTcount: A:0.33, C:0.13, G:0.19, T:0.35
Consensus pattern (20 bp):
TTGTATCGATACATGAGGAA
Found at i:93719 original size:16 final size:17
Alignment explanation
Indices: 93698--93736 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 17
93688 TTTATATTTT
*
93698 ATATAATATAATAAT-A
1 ATATAATAAAATAATAA
*
93714 ATATAATAAAATATTAA
1 ATATAATAAAATAATAA
93731 ATATAA
1 ATATAA
93737 CAAATTATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 13 0.65
17 7 0.35
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (17 bp):
ATATAATAAAATAATAA
Found at i:94634 original size:24 final size:24
Alignment explanation
Indices: 94602--94648 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 24
94592 AATTATAACT
**
94602 TAATAAATTTTAAATTACTTTTTA
1 TAATAAATTAAAAATTACTTTTTA
* *
94626 TAATTAATTAAAAATTTCTTTTT
1 TAATAAATTAAAAATTACTTTTT
94649 TTAAAAAAAA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.40, C:0.04, G:0.00, T:0.55
Consensus pattern (24 bp):
TAATAAATTAAAAATTACTTTTTA
Found at i:101032 original size:32 final size:32
Alignment explanation
Indices: 100996--101065 Score: 97
Period size: 32 Copynumber: 2.2 Consensus size: 32
100986 CATTTTTAAC
*
100996 AAATTTGATGAATA-TTGAACAAAATTACTTAT
1 AAATTTGATGAATATTTG-ACAAAATTACGTAT
* *
101028 AAATTTGATGAATATTTGACATAATTACGTGT
1 AAATTTGATGAATATTTGACAAAATTACGTAT
101060 AAATTT
1 AAATTT
101066 AATATTTATC
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
32 31 0.91
33 3 0.09
ACGTcount: A:0.43, C:0.06, G:0.11, T:0.40
Consensus pattern (32 bp):
AAATTTGATGAATATTTGACAAAATTACGTAT
Found at i:101480 original size:17 final size:18
Alignment explanation
Indices: 101458--101505 Score: 53
Period size: 17 Copynumber: 2.7 Consensus size: 18
101448 GATTTTTTAT
*
101458 ATAAAATTAAAATAAT-A
1 ATAAAATAAAAATAATCA
* *
101475 ATAAAATGAAAACAATCA
1 ATAAAATAAAAATAATCA
*
101493 AAAAAATAAAAAT
1 ATAAAATAAAAAT
101506 CAAAAACAAA
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
17 14 0.56
18 11 0.44
ACGTcount: A:0.73, C:0.04, G:0.02, T:0.21
Consensus pattern (18 bp):
ATAAAATAAAAATAATCA
Found at i:101506 original size:15 final size:16
Alignment explanation
Indices: 101483--101521 Score: 53
Period size: 15 Copynumber: 2.5 Consensus size: 16
101473 TAATAAAATG
*
101483 AAAACAATCAAAAA-A
1 AAAAAAATCAAAAACA
*
101498 ATAAAAATCAAAAACA
1 AAAAAAATCAAAAACA
101514 AAAAAAAT
1 AAAAAAAT
101522 TAATTAAAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
15 12 0.60
16 8 0.40
ACGTcount: A:0.79, C:0.10, G:0.00, T:0.10
Consensus pattern (16 bp):
AAAAAAATCAAAAACA
Found at i:102296 original size:20 final size:20
Alignment explanation
Indices: 102271--102342 Score: 90
Period size: 20 Copynumber: 3.6 Consensus size: 20
102261 TACCCAGATA
102271 TATCGATACATTTTTCAATG
1 TATCGATACATTTTTCAATG
* * * *
102291 TATCGATGCATGTATGAATG
1 TATCGATACATTTTTCAATG
* *
102311 TATCGATAAATTCTTCAATG
1 TATCGATACATTTTTCAATG
102331 TATCGATACATT
1 TATCGATACATT
102343 CTGTCTTTTT
Statistics
Matches: 41, Mismatches: 11, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.32, C:0.14, G:0.14, T:0.40
Consensus pattern (20 bp):
TATCGATACATTTTTCAATG
Found at i:111008 original size:83 final size:83
Alignment explanation
Indices: 110909--111215 Score: 397
Period size: 83 Copynumber: 3.7 Consensus size: 83
110899 TGGCATCCCT
* * *
110909 TTTTAAGTCCACAACTCCGTGGCAACCTTTT-AAGTCCACGATTTAGTGGCATTCCTTTTTAAGT
1 TTTTAAGTCCACAACTCTGTGGCAACCTTTTAAAGTCCACGACTTCGTGGCA-TCCTTTTTAAGT
110973 CCATAACTCCGTGGCAACC
65 CCATAACTCCGTGGCAACC
* *
110992 TTTTAAGTCCATAACTCTGTGGCAACCTTTT-AAGTCCACCG-CTCCGTGGCATCCTTTTTAAGT
1 TTTTAAGTCCACAACTCTGTGGCAACCTTTTAAAGTCCA-CGACTTCGTGGCATCCTTTTTAAGT
* * *
111055 CCATAGCTCTGTGGCATCC
65 CCATAACTCCGTGGCAACC
* * * * *
111074 TTTTAAGTCTACAAATCAGTGGCATCCTTTTAAAGTCCACAACTTCGTGGCATCC-TTTTAAGTC
1 TTTTAAGTCCACAACTCTGTGGCAACCTTTTAAAGTCCACGACTTCGTGGCATCCTTTTTAAGTC
* *
111138 CACAACTCCGTGGTAACC
66 CATAACTCCGTGGCAACC
* * *
111156 TTTTAAAGTCCACAACTCTGTGGCATCCTTTTAAAGTCCACAACTCCGTGGCATCCTTTT
1 TTTT-AAGTCCACAACTCTGTGGCAACCTTTTAAAGTCCACGACTTCGTGGCATCCTTTT
111216 AAAATCCACA
Statistics
Matches: 195, Mismatches: 24, Indels: 9
0.86 0.11 0.04
Matches are distributed among these distances:
82 81 0.42
83 109 0.56
84 5 0.03
ACGTcount: A:0.23, C:0.28, G:0.15, T:0.33
Consensus pattern (83 bp):
TTTTAAGTCCACAACTCTGTGGCAACCTTTTAAAGTCCACGACTTCGTGGCATCCTTTTTAAGTC
CATAACTCCGTGGCAACC
Found at i:111173 original size:28 final size:27
Alignment explanation
Indices: 110899--111383 Score: 398
Period size: 28 Copynumber: 17.4 Consensus size: 27
110889 CACGATTTAA
110899 TGGCATCCCTTTTTAAGTCCACAACTCCG
1 TGGCAT-CC-TTTTAAGTCCACAACTCCG
* * * **
110928 TGGCAACCTTTTAAGTCCACGATTTAG
1 TGGCATCCTTTTAAGTCCACAACTCCG
*
110955 TGGCATTCCTTTTTAAGTCCATAACTCCG
1 TGGCA-TCC-TTTTAAGTCCACAACTCCG
* * *
110984 TGGCAACCTTTTAAGTCCATAACTCTG
1 TGGCATCCTTTTAAGTCCACAACTCCG
* **
111011 TGGCAACCTTTTAAGTCCACCGCTCCG
1 TGGCATCCTTTTAAGTCCACAACTCCG
* * *
111038 TGGCATCCTTTTTAAGTCCATAGCTCTG
1 TGGCATCC-TTTTAAGTCCACAACTCCG
* * *
111066 TGGCATCCTTTTAAGTCTACAAATCAG
1 TGGCATCCTTTTAAGTCCACAACTCCG
*
111093 TGGCATCCTTTTAAAGTCCACAACTTCG
1 TGGCATCCTTTT-AAGTCCACAACTCCG
111121 TGGCATCCTTTTAAGTCCACAACTCCG
1 TGGCATCCTTTTAAGTCCACAACTCCG
* * *
111148 TGGTAACCTTTTAAAGTCCACAACTCTG
1 TGGCATCCTTTT-AAGTCCACAACTCCG
111176 TGGCATCCTTTTAAAGTCCACAACTCCG
1 TGGCATCCTTTT-AAGTCCACAACTCCG
* **
111204 TGGCATCCTTTTAAAATCCACAACTTTG
1 TGGCATCCTTTT-AAGTCCACAACTCCG
* * * * *
111232 TGGTATCCTTTGAAAGCCCACAAGTCAG
1 TGGCATCCTTT-TAAGTCCACAACTCCG
* * *
111260 TGGCAT-CTTTTCCAAGCCCACAAATCAG
1 TGGCATCCTTTT--AAGTCCACAACTCCG
* * * *
111288 TGGCA-CACTTTCAAAGCCCACAAGTCAG
1 TGGCATC-CTTT-TAAGTCCACAACTCCG
* * * * **
111316 TGGCACCCTTTGAAAGCCCACAAGTTAG
1 TGGCATCCTTT-TAAGTCCACAACTCCG
* * *
111344 TGGCATCCTTTCAAAGTCCACAAGTCAG
1 TGGCATCCTTT-TAAGTCCACAACTCCG
111372 TGGCATCCTTTT
1 TGGCATCCTTTT
111384 CCAAGCCCAC
Statistics
Matches: 385, Mismatches: 59, Indels: 26
0.82 0.13 0.06
Matches are distributed among these distances:
27 122 0.32
28 234 0.61
29 29 0.08
ACGTcount: A:0.25, C:0.28, G:0.16, T:0.30
Consensus pattern (27 bp):
TGGCATCCTTTTAAGTCCACAACTCCG
Found at i:111216 original size:83 final size:83
Alignment explanation
Indices: 110906--111547 Score: 451
Period size: 84 Copynumber: 7.7 Consensus size: 83
110896 TAATGGCATC
* * * * * *
110906 CCTTTTTAAGTCCACAACTCCGTGGCAACCTTTT-AAGTCCACGATTTAGTGGCATTCCTTTTTA
1 CCTTTTAAAGTCCACAACTCTGTGGCATCCTTTTAAAGTCCACAACTCAGTGGCA-TCC-TTTTA
*
110970 AGTCCATAACTCCGTGGCAA
64 AGTCCACAACTCCGTGGCAA
* * ** *
110990 CCTTTT-AAGTCCATAACTCTGTGGCAACCTTTT-AAGTCCACCGCTCCGTGGCATCCTTTTTAA
1 CCTTTTAAAGTCCACAACTCTGTGGCATCCTTTTAAAGTCCACAACTCAGTGGCATCC-TTTTAA
* * * *
111053 GTCCATAGCTCTGTGGCAT
65 GTCCACAACTCCGTGGCAA
* * *
111072 CCTTTT-AAGTCTACAAATCAGTGGCATCCTTTTAAAGTCCACAACTTC-GTGGCATCCTTTTAA
1 CCTTTTAAAGTCCACAACTCTGTGGCATCCTTTTAAAGTCCACAAC-TCAGTGGCATCCTTTTAA
*
111135 GTCCACAACTCCGTGGTAA
65 GTCCACAACTCCGTGGCAA
*
111154 CCTTTTAAAGTCCACAACTCTGTGGCATCCTTTTAAAGTCCACAACTCCGTGGCATCCTTTTAAA
1 CCTTTTAAAGTCCACAACTCTGTGGCATCCTTTTAAAGTCCACAACTCAGTGGCATCCTTTT-AA
* ** * *
111219 ATCCACAACTTTGTGGTAT
65 GTCCACAACTCCGTGGCAA
* * * * * * * *
111238 CCTTTGAAAGCCCACAAGTCAGTGGCAT-CTTTTCCAAGCCCACAAATCAGTGGCA-CACTTTCA
1 CCTTTTAAAGTCCACAACTCTGTGGCATCCTTTT-AAAGTCCACAACTCAGTGGCATC-CTTT-T
* * * *
111301 AAGCCCACAAGTCAGTGGCAC
63 AAGTCCACAACTCCGTGGCAA
* * * * *
111322 CCTTTGAAAGCCCACAAGT-TAGTGGCATCCTTTCAAAGTCCACAAGTCAGTGGCATCCTTTTCC
1 CCTTTTAAAGTCCACAACTCT-GTGGCATCCTTTTAAAGTCCACAACTCAGTGGCATCCTTTT--
* * ** *
111386 AAGCCCACAAATTAGTGGCAC
63 AAGTCCACAACTCCGTGGCAA
* * * * * * * * * * *
111407 CCATTCAAAGCCCACAAGTCAGTGGCATCTTTTTCCAAGCCCACAAATCAGTGGCACCCTTTCAA
1 CCTTTTAAAGTCCACAACTCTGTGGCATCCTTTT-AAAGTCCACAACTCAGTGGCATCCTTT-TA
* * *
111472 AG-CCTACAAGTCAGTGGCAC
64 AGTCC-ACAACTCCGTGGCAA
* * * * *
111492 CCTTTCAAAGTTCACAAGT-TAGTGGCATCCTTTTCAAA-TCCCACAAGTTAGTGGCA
1 CCTTTTAAAGTCCACAACTCT-GTGGCATCCTTTT-AAAGT-CCACAACTCAGTGGCA
111548 CCCCTTTTTA
Statistics
Matches: 465, Mismatches: 74, Indels: 37
0.81 0.13 0.06
Matches are distributed among these distances:
82 82 0.18
83 113 0.24
84 134 0.29
85 113 0.24
86 23 0.05
ACGTcount: A:0.26, C:0.29, G:0.16, T:0.29
Consensus pattern (83 bp):
CCTTTTAAAGTCCACAACTCTGTGGCATCCTTTTAAAGTCCACAACTCAGTGGCATCCTTTTAAG
TCCACAACTCCGTGGCAA
Found at i:111224 original size:56 final size:56
Alignment explanation
Indices: 110899--111525 Score: 488
Period size: 56 Copynumber: 11.2 Consensus size: 56
110889 CACGATTTAA
* * * *
110899 TGGCATCCCTTTTTAAGTCCACAACTCCGTGGCAACCTTTT-AAGTCCACGA-TTTAG
1 TGGCAT-CCTTTTAAAGTCCACAACTCCGTGGCATCCTTTTAAAGTCCACAACTCT-G
* * * *
110955 TGGCATTCCTTTTTAAGTCCATAACTCCGTGGCAACCTTTT-AAGTCCATAACTCTG
1 TGGCA-TCCTTTTAAAGTCCACAACTCCGTGGCATCCTTTTAAAGTCCACAACTCTG
* ** * * *
111011 TGGCAACCTTTT-AAGTCCACCGCTCCGTGGCATCCTTTTTAAGTCCATAGCTCTG
1 TGGCATCCTTTTAAAGTCCACAACTCCGTGGCATCCTTTTAAAGTCCACAACTCTG
* * *
111066 TGGCATCCTTTT-AAGTCTACAAATCAGTGGCATCCTTTTAAAGTCCACAACT-TCG
1 TGGCATCCTTTTAAAGTCCACAACTCCGTGGCATCCTTTTAAAGTCCACAACTCT-G
* *
111121 TGGCATCCTTTT-AAGTCCACAACTCCGTGGTAACCTTTTAAAGTCCACAACTCTG
1 TGGCATCCTTTTAAAGTCCACAACTCCGTGGCATCCTTTTAAAGTCCACAACTCTG
* *
111176 TGGCATCCTTTTAAAGTCCACAACTCCGTGGCATCCTTTTAAAATCCACAACTTTG
1 TGGCATCCTTTTAAAGTCCACAACTCCGTGGCATCCTTTTAAAGTCCACAACTCTG
* * * * * * * * *
111232 TGGTATCCTTTGAAAGCCCACAAGTCAGTGGCAT-CTTTTCCAAGCCCACAAATCAG
1 TGGCATCCTTTTAAAGTCCACAACTCCGTGGCATCCTTTT-AAAGTCCACAACTCTG
* * * * * * * *
111288 TGGCA-CACTTTCAAAGCCCACAAGTCAGTGGCACCCTTTGAAAGCCCACAAGT-TAG
1 TGGCATC-CTTTTAAAGTCCACAACTCCGTGGCATCCTTTTAAAGTCCACAACTCT-G
* * * * * *
111344 TGGCATCCTTTCAAAGTCCACAAGTCAGTGGCATCCTTTTCCAAGCCCACAAAT-TAG
1 TGGCATCCTTTTAAAGTCCACAACTCCGTGGCATCCTTTT-AAAGTCCACAACTCT-G
* * * * * * * * * * *
111401 TGGCACCCATTCAAAGCCCACAAGTCAGTGGCATCTTTTTCCAAGCCCACAAATCAG
1 TGGCATCCTTTTAAAGTCCACAACTCCGTGGCATCCTTTT-AAAGTCCACAACTCTG
* * * * * * * *
111458 TGGCACCCTTTCAAAG-CCTACAAGTCAGTGGCACCCTTTCAAAGTTCACAAGT-TAG
1 TGGCATCCTTTTAAAGTCC-ACAACTCCGTGGCATCCTTTTAAAGTCCACAACTCT-G
111514 TGGCATCCTTTT
1 TGGCATCCTTTT
111526 CAAATCCCAC
Statistics
Matches: 489, Mismatches: 67, Indels: 30
0.83 0.11 0.05
Matches are distributed among these distances:
54 24 0.05
55 130 0.27
56 229 0.47
57 106 0.22
ACGTcount: A:0.26, C:0.29, G:0.16, T:0.29
Consensus pattern (56 bp):
TGGCATCCTTTTAAAGTCCACAACTCCGTGGCATCCTTTTAAAGTCCACAACTCTG
Found at i:111430 original size:28 final size:28
Alignment explanation
Indices: 111084--112152 Score: 748
Period size: 28 Copynumber: 37.1 Consensus size: 28
111074 TTTTAAGTCT
* * * *
111084 ACAAATCAGTGGCATCCTTTTAAAGTCC
1 ACAAGTCAGTGGCACCCTTTCAAAGCCC
* * * *
111112 ACAACTTC-GTGGCATCCTTT-TAAGTCC
1 ACAA-GTCAGTGGCACCCTTTCAAAGCCC
* * * * * *
111139 ACAACTCCGTGGTAACCTTTTAAAGTCC
1 ACAAGTCAGTGGCACCCTTTCAAAGCCC
* * * * *
111167 ACAACTCTGTGGCATCCTTTTAAAGTCC
1 ACAAGTCAGTGGCACCCTTTCAAAGCCC
* * * * **
111195 ACAACTCCGTGGCATCCTTTTAAAATCC
1 ACAAGTCAGTGGCACCCTTTCAAAGCCC
* ** * * *
111223 ACAACTTTGTGGTATCCTTTGAAAGCCC
1 ACAAGTCAGTGGCACCCTTTCAAAGCCC
* * *
111251 ACAAGTCAGTGGCATCTTTTCCAAGCCC
1 ACAAGTCAGTGGCACCCTTTCAAAGCCC
* *
111279 ACAAATCAGTGGCACACTTTCAAAGCCC
1 ACAAGTCAGTGGCACCCTTTCAAAGCCC
*
111307 ACAAGTCAGTGGCACCCTTTGAAAGCCC
1 ACAAGTCAGTGGCACCCTTTCAAAGCCC
* * *
111335 ACAAGTTAGTGGCATCCTTTCAAAGTCC
1 ACAAGTCAGTGGCACCCTTTCAAAGCCC
* *
111363 ACAAGTCAGTGGCATCCTTTTCCAAGCCC
1 ACAAGTCAGTGGCA-CCCTTTCAAAGCCC
* * *
111392 ACAAATTAGTGGCACCCATTCAAAGCCC
1 ACAAGTCAGTGGCACCCTTTCAAAGCCC
** *
111420 ACAAGTCAGTGGCATCTTTTTCCAAGCCC
1 ACAAGTCAGTGGCA-CCCTTTCAAAGCCC
* *
111449 ACAAATCAGTGGCACCCTTTCAAAGCCT
1 ACAAGTCAGTGGCACCCTTTCAAAGCCC
**
111477 ACAAGTCAGTGGCACCCTTTCAAAGTTC
1 ACAAGTCAGTGGCACCCTTTCAAAGCCC
* * *
111505 ACAAGTTAGTGGCATCCTTTTCAAATCCC
1 ACAAGTCAGTGGCA-CCCTTTCAAAGCCC
* ** *
111534 ACAAGTTAGTGGCACCCCTTTTTAAGCCT
1 ACAAGTCAGTGGCA-CCCTTTCAAAGCCC
* *** *
111563 ACAAGTCAGTGACATTATTTGAAAGCCTAC
1 ACAAGTCAGTGGCACCCTTTCAAAGCC--C
*
111593 ACAAGTCGGTGGCAACCCATTTCAAAGCCC
1 ACAAGTCAGTGGC-ACCC-TTTCAAAGCCC
*
111623 ACAAGTCAGTGGCATCCTTTCAAAGCCC
1 ACAAGTCAGTGGCACCCTTTCAAAGCCC
* *
111651 ACAAGTTAGTGGCATCCTTCTCAAAGCCCAC
1 ACAAGTCAGTGGCACCCTT-TCAAAG-CC-C
**
111682 ACAAGTTGGTGGCAACCCATTTCAAA-CCC
1 ACAAGTCAGTGGC-ACCC-TTTCAAAGCCC
* * * *
111711 TACAAGTTAGTGGCATCATTTTAAAGCCCAC
1 -ACAAGTCAGTGGCACCCTTTCAAAG-CC-C
* * * * *
111742 ACAAGTCGGTGGCAACTCATTTGAAAACCTAT
1 ACAAGTCAGTGGC-AC-CCTTTCAAAGCC--C
111774 ACAAGT-AGGTGGCAACCCATTTCAAAGCCCAC
1 ACAAGTCA-GTGGC-ACCC-TTTCAAAG-CC-C
**
111806 ACAAGTTGGTGGCAACCCATTTCAAAGCCCAC
1 ACAAGTCAGTGGC-ACCC-TTTCAAAG-CC-C
* * *
111838 ACAAGTTAGTGACAACCCATTTCAAAGCTC
1 ACAAGTCAGTGGC-ACCC-TTTCAAAGCCC
*
111868 ACAAATCAGTGGCACCCTTTCAAAGCCC
1 ACAAGTCAGTGGCACCCTTTCAAAGCCC
* *
111896 ATAAGT-AGTGGCACCTTTTCAAAGCCC
1 ACAAGTCAGTGGCACCCTTTCAAAGCCC
* * *
111923 ACAAGTTAGTGGCATCCTTTCAAAGTCC
1 ACAAGTCAGTGGCACCCTTTCAAAGCCC
*
111951 ACAAGTCAGTGGCATCCTTTTTCAAAGCCC
1 ACAAGTCAGTGGCA-CC-CTTTCAAAGCCC
* * *
111981 ACAAGTTAGTGGCACCTTTTCAAAGCTC
1 ACAAGTCAGTGGCACCCTTTCAAAGCCC
* * *
112009 ACAAGTCGGTGGCATCCTTTCAAAGTCC
1 ACAAGTCAGTGGCACCCTTTCAAAGCCC
* ** *
112037 ACAAGTTAGTGGCATCTTTTTCAAATCCC
1 ACAAGTCAGTGGCA-CCCTTTCAAAGCCC
* *
112066 ACAAGTC-GATGGCATCTTTTCAAAGCCC
1 ACAAGTCAG-TGGCACCCTTTCAAAGCCC
* * * **
112094 ACAACTCAGAGGCA-TCTTCTCAAAATCC
1 ACAAGTCAGTGGCACCCTT-TCAAAGCCC
* * * *
112122 ATAAGTCAGTGGCATCTTTTTAAAGCCC
1 ACAAGTCAGTGGCACCCTTTCAAAGCCC
112150 ACA
1 ACA
112153 TAAGTCAATG
Statistics
Matches: 848, Mismatches: 159, Indels: 68
0.79 0.15 0.06
Matches are distributed among these distances:
26 2 0.00
27 47 0.06
28 452 0.53
29 134 0.16
30 87 0.10
31 20 0.02
32 102 0.12
33 4 0.00
ACGTcount: A:0.30, C:0.29, G:0.16, T:0.25
Consensus pattern (28 bp):
ACAAGTCAGTGGCACCCTTTCAAAGCCC
Found at i:111778 original size:32 final size:31
Alignment explanation
Indices: 111591--111859 Score: 196
Period size: 32 Copynumber: 8.8 Consensus size: 31
111581 TTGAAAGCCT
* * *
111591 ACACAAGTCGGTGGCAACCCATTTCAAAGCC
1 ACACAAGTTGGTGGCAACCCATTTAAAACCC
** * * *
111622 -CACAAGTCAGTGGC-ATCC-TTTCAAAGCC
1 ACACAAGTTGGTGGCAACCCATTTAAAACCC
* * *
111650 -CACAAGTTAGTGGC-ATCC-TTCTCAAAGCCC
1 ACACAAGTTGGTGGCAACCCATT-T-AAAACCC
*
111680 ACACAAGTTGGTGGCAACCCATTTCAAACCC
1 ACACAAGTTGGTGGCAACCCATTTAAAACCC
* * * *
111711 -TACAAGTTAGTGGC-A-TCATTTTAAAGCCC
1 ACACAAGTTGGTGGCAACCCA-TTTAAAACCC
* * *
111740 ACACAAGTCGGTGGCAACTCATTTGAAAACCT
1 ACACAAGTTGGTGGCAACCCATTT-AAAACCC
* * *
111772 ATACAAGTAGGTGGCAACCCATTTCAAAGCCC
1 ACACAAGTTGGTGGCAACCCATTT-AAAACCC
*
111804 ACACAAGTTGGTGGCAACCCATTTCAAAGCCC
1 ACACAAGTTGGTGGCAACCCATTT-AAAACCC
* *
111836 ACACAAGTTAGTGACAACCCATTT
1 ACACAAGTTGGTGGCAACCCATTT
111860 CAAAGCTCAC
Statistics
Matches: 198, Mismatches: 30, Indels: 19
0.80 0.12 0.08
Matches are distributed among these distances:
28 31 0.16
29 13 0.07
30 40 0.20
31 22 0.11
32 90 0.45
33 2 0.01
ACGTcount: A:0.32, C:0.29, G:0.17, T:0.22
Consensus pattern (31 bp):
ACACAAGTTGGTGGCAACCCATTTAAAACCC
Found at i:111804 original size:64 final size:63
Alignment explanation
Indices: 111244--111983 Score: 373
Period size: 57 Copynumber: 12.7 Consensus size: 63
111234 GTATCCTTTG
* * * * * *
111244 AAAGCC-CACAAGTCAGTGGC-A-TCTTTTCCAAGCCCACA-AA-TCAGTGGC-ACAC-TTTC
1 AAAGCCACACAAGTTAGTGGCAACCCATTTCAAAGCCCACACAAGTCGGTGGCAACCCATTTC
* * ** *
111300 AAAGCC-CACAAGTCAGTGGC-ACCC-TTTGAAAG-CC-CACAAGTTAGTGGC-ATCC-TTTC
1 AAAGCCACACAAGTTAGTGGCAACCCATTTCAAAGCCCACACAAGTCGGTGGCAACCCATTTC
* * * * * **
111356 AAAGTC-CACAAGTCAGTGGC-ATCCTTTTCCAAGCCCACA-AA-TTAGTGGC-ACCCA-TTC
1 AAAGCCACACAAGTTAGTGGCAACCCATTTCAAAGCCCACACAAGTCGGTGGCAACCCATTTC
* * ** * *
111413 AAAGCC-CACAAGTCAGTGGC-ATCTTTTTCCAAGCCCACA-AA-TCAGTGGC-ACCC-TTTC
1 AAAGCCACACAAGTTAGTGGCAACCCATTTCAAAGCCCACACAAGTCGGTGGCAACCCATTTC
* * ** ** * *
111470 AAAGCC-TACAAGTCAGTGGC-ACCC-TTTCAAAG--TTCACAAGTTAGTGGC-ATCCTTTTC
1 AAAGCCACACAAGTTAGTGGCAACCCATTTCAAAGCCCACACAAGTCGGTGGCAACCCATTTC
* * ** * * * ** *
111527 AAATCC-CACAAGTTAGTGGC-ACCCCTTTTTAAG-CC-TACAAGTCAGTGAC-A-TTATTTG
1 AAAGCCACACAAGTTAGTGGCAACCCATTTCAAAGCCCACACAAGTCGGTGGCAACCCATTTC
** * *
111584 AAAGCCTACACAAGTCGGTGGCAACCCATTTCAAAG-CC-CACAAGTCAGTGGC-ATCC-TTTC
1 AAAGCC-ACACAAGTTAGTGGCAACCCATTTCAAAGCCCACACAAGTCGGTGGCAACCCATTTC
* *
111644 AAAGCC-CACAAGTTAGTGGC-ATCC-TTCTCAAAGCCCACACAAGTTGGTGGCAACCCATTTC
1 AAAGCCACACAAGTTAGTGGCAACCCATT-TCAAAGCCCACACAAGTCGGTGGCAACCCATTTC
* * * *
111705 AAA-CC-CTACAAGTTAGTGGC-A-TCATTTTAAAGCCCACACAAGTCGGTGGCAACTCATTTG
1 AAAGCCAC-ACAAGTTAGTGGCAACCCATTTCAAAGCCCACACAAGTCGGTGGCAACCCATTTC
* * *
111765 AAAACCTATACAAG-TAGGTGGCAACCCATTTCAAAGCCCACACAAGTTGGTGGCAACCCATTTC
1 AAAGCC-ACACAAGTTA-GTGGCAACCCATTTCAAAGCCCACACAAGTCGGTGGCAACCCATTTC
* * *
111829 AAAGCCCACACAAGTTAGTGACAACCCATTTCAAAGCTCACA-AA-TCAGTGGC-ACCC-TTTC
1 AAAG-CCACACAAGTTAGTGGCAACCCATTTCAAAGCCCACACAAGTCGGTGGCAACCCATTTC
* * ** *
111889 AAAGCC-CATAAG-TAGTGGC-A-CCTTTTCAAAG-CC-CACAAGTTAGTGGC-ATCC-TTTC
1 AAAGCCACACAAGTTAGTGGCAACCCATTTCAAAGCCCACACAAGTCGGTGGCAACCCATTTC
* * * **
111944 AAAGTC-CACAAGTCAGTGGCATCCTTTTTCAAAGCCCACA
1 AAAGCCACACAAGTTAGTGGCAACCCATTTCAAAGCCCACA
111984 AGTTAGTGGC
Statistics
Matches: 565, Mismatches: 80, Indels: 74
0.79 0.11 0.10
Matches are distributed among these distances:
53 2 0.00
54 7 0.01
55 40 0.07
56 88 0.16
57 143 0.25
58 51 0.09
59 30 0.05
60 84 0.15
61 31 0.05
62 16 0.03
63 3 0.01
64 66 0.12
65 4 0.01
ACGTcount: A:0.31, C:0.29, G:0.17, T:0.23
Consensus pattern (63 bp):
AAAGCCACACAAGTTAGTGGCAACCCATTTCAAAGCCCACACAAGTCGGTGGCAACCCATTTC
Found at i:112108 original size:85 final size:86
Alignment explanation
Indices: 111065--112152 Score: 755
Period size: 85 Copynumber: 12.6 Consensus size: 86
111055 CCATAGCTCT
* * * * *
111065 GTGGCATCCTTT-TAAGTCTACAAATCAGTGGCATCCTTTT-AAAGTCCACAACTTC--GTGGCA
1 GTGGCATCCTTTCAAAGTCCACAAGTCAGTGGCATCCTTTTCAAAGCCCACAA-GTCGAGTGGCA
* * *
111126 TCCTTTT--AAGTCCACAACTCC
65 T-CTTTTCAAAGCCCACAAGTCA
* * * * * * * *
111147 GTGGTAACCTTTTAAAGTCCACAACTCTGTGGCATCCTTTT-AAAGTCCACAACTC-CGTGGCAT
1 GTGGCATCCTTTCAAAGTCCACAAGTCAGTGGCATCCTTTTCAAAGCCCACAAGTCGAGTGGCAT
** * **
111210 CCTTTT-AAAATCCACAACTTT
66 -CTTTTCAAAGCCCACAAGTCA
* * * * *
111231 GTGGTATCCTTTGAAAGCCCACAAGTCAGTGGCAT-CTTTTCCAAGCCCACAAATC-AGTGGCA-
1 GTGGCATCCTTTCAAAGTCCACAAGTCAGTGGCATCCTTTTCAAAGCCCACAAGTCGAGTGGCAT
*
111293 CACTTTCAAAGCCCACAAGTCA
66 C-TTTTCAAAGCCCACAAGTCA
* * * * *
111315 GTGGCACCCTTTGAAAGCCCACAAGTTAGTGGCATCC-TTTCAAAGTCCACAAGTC-AGTGGCAT
1 GTGGCATCCTTTCAAAGTCCACAAGTCAGTGGCATCCTTTTCAAAGCCCACAAGTCGAGTGGCAT
* * *
111378 CCTTTTCCAAGCCCACAAATTA
66 -CTTTTCAAAGCCCACAAGTCA
* * * * * * *
111400 GTGGCACCCATTCAAAGCCCACAAGTCAGTGGCATCTTTTTCCAAGCCCACAAATC-AGTGGCAC
1 GTGGCATCCTTTCAAAGTCCACAAGTCAGTGGCATCCTTTTCAAAGCCCACAAGTCGAGTGGCAT
* *
111464 CCTTTCAAAGCCTACAAGTCA
66 CTTTTCAAAGCCCACAAGTCA
* * * * *
111485 GTGGCACCCTTTCAAAGTTCACAAGTTAGTGGCATCCTTTTCAAATCCCACAAGT-TAGTGGCAC
1 GTGGCATCCTTTCAAAGTCCACAAGTCAGTGGCATCCTTTTCAAAGCCCACAAGTCGAGTGGCA-
* * *
111549 CCCTTTT-TAAGCCTACAAGTCA
65 -TCTTTTCAAAGCCCACAAGTCA
* ** * * * * *
111571 GTGACATTATTTGAAAGCCTACACAAGTCGGTGGCAACCCATTTCAAAGCCCACAAGTC-AGTGG
1 GTGGCATCCTTTCAAAG--TCCACAAGTCAGTGGC-ATCCTTTTCAAAGCCCACAAGTCGAGTGG
* *
111635 CATCCTTTCAAAGCCCACAAGTTA
63 CATCTTTTCAAAGCCCACAAGTCA
* ** * * *
111659 GTGGCATCCTTCTCAAAGCCCACACAAGTTGGTGGCAACCCATTTCAAA-CCCTACAAGT-TAGT
1 GTGGCATCCTT-TCAAAG-TC-CACAAGTCAGTGGC-ATCCTTTTCAAAGCCC-ACAAGTCGAGT
*
111722 GGCATCATTTT-AAAGCCCACACAAGTCG
61 GGCATC-TTTTCAAAG-CC-CACAAGTCA
* * * * * *
111750 GTGGCAACTCATTTGAAA-ACCTATACAAGT-AGGTGGCAACCCATTTCAAAGCCCACACAAGTT
1 GTGGC-A-TCCTTTCAAAGTCC---ACAAGTCA-GTGGC-ATCCTTTTCAAAG-CC-CACAAGTC
* * *
111813 G-GTGGCAACCCATTTCAAAGCCCACACAAGTTA
57 GAGTGGC-A-TCTTTTCAAAG-CC-CACAAGTCA
* * * * *
111846 GTGACAACCCATTTCAAAG-CTCACAAATCAGTGGCA-CCCTTTCAAAGCCCATAAGT--AGTGG
1 GTGGC-ATCC-TTTCAAAGTC-CACAAGTCAGTGGCATCCTTTTCAAAGCCCACAAGTCGAGTGG
* *
111907 CACCTTTTCAAAGCCCACAAGTTA
63 CATCTTTTCAAAGCCCACAAGTCA
*
111931 GTGGCATCCTTTCAAAGTCCACAAGTCAGTGGCATCCTTTTTCAAAGCCCACAAGT-TAGTGGCA
1 GTGGCATCCTTTCAAAGTCCACAAGTCAGTGGCATCC-TTTTCAAAGCCCACAAGTCGAGTGGCA
* * *
111995 CCTTTTCAAAGCTCACAAGTCG
65 TCTTTTCAAAGCCCACAAGTCA
* * *
112017 GTGGCATCCTTTCAAAGTCCACAAGTTAGTGGCATCTTTTTCAAATCCCACAAGTCGA-TGGCAT
1 GTGGCATCCTTTCAAAGTCCACAAGTCAGTGGCATCCTTTTCAAAGCCCACAAGTCGAGTGGCAT
*
112081 CTTTTCAAAGCCCACAACTCA
66 CTTTTCAAAGCCCACAAGTCA
* * * *
112102 GAGGCAT-CTTCTCAAAATCCATAAGTCAGTGGCAT-CTTTTTAAAGCCCACA
1 GTGGCATCCTT-TCAAAGTCCACAAGTCAGTGGCATCCTTTTCAAAGCCCACA
112153 TAAGTCAATG
Statistics
Matches: 833, Mismatches: 124, Indels: 96
0.79 0.12 0.09
Matches are distributed among these distances:
82 13 0.02
83 78 0.09
84 144 0.17
85 216 0.26
86 113 0.14
87 19 0.02
88 38 0.05
89 82 0.10
90 12 0.01
91 14 0.02
92 39 0.05
93 5 0.01
94 23 0.03
95 7 0.01
96 29 0.03
97 1 0.00
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25
Consensus pattern (86 bp):
GTGGCATCCTTTCAAAGTCCACAAGTCAGTGGCATCCTTTTCAAAGCCCACAAGTCGAGTGGCAT
CTTTTCAAAGCCCACAAGTCA
Found at i:113013 original size:20 final size:20
Alignment explanation
Indices: 112966--113016 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
112956 TACCTAGAGG
* * *
112966 TATCGATACATTTTTCAATG
1 TATCGATACATGTATCAATA
* *
112986 TATTGATACATGTATGAATA
1 TATCGATACATGTATCAATA
113006 TATCGATACAT
1 TATCGATACAT
113017 TCTATCTTTT
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.35, C:0.12, G:0.12, T:0.41
Consensus pattern (20 bp):
TATCGATACATGTATCAATA
Found at i:124776 original size:130 final size:130
Alignment explanation
Indices: 124609--124864 Score: 374
Period size: 130 Copynumber: 2.0 Consensus size: 130
124599 TCATTCACGT
*
124609 TTTTATTTCTAAAATACTGATTTTCCACCATCAGGGATACTCCAACCCCGTTATTTTCGAAGGGA
1 TTTTATTTCTAAAATACTGATTTTCCACCATCAGGGATACTCCAACCCCATTATTTTCGAAGGGA
*
124674 TACT-CAAACCCCGATTTTATTTCCAAAATACCGATTTTTCACAATCA-GAGATACTCCAACCTC
66 TACTGC-AACCCCGATTTTATTTCCAAAATACCAATTTTTCACAATCAGGA-ATACTCCAACCTC
124737 GA
129 GA
* ** *
124739 TTTTATTTCTAAAATA-TCGATTTTTCACCATTGGGGATACTCCAACCCTATTATTTTCGAAGGG
1 TTTTATTTCTAAAATACT-GATTTTCCACCATCAGGGATACTCCAACCCCATTATTTTCGAAGGG
* * * *
124803 ATACTGCAACCTCGATTTTATTTTCAAAATATCAATTTTTCATAATCAGGAATACTCCAACC
65 ATACTGCAACCCCGATTTTATTTCCAAAATACCAATTTTTCACAATCAGGAATACTCCAACC
124865 CCATTATTTT
Statistics
Matches: 113, Mismatches: 10, Indels: 6
0.88 0.08 0.05
Matches are distributed among these distances:
129 1 0.01
130 109 0.96
131 3 0.03
ACGTcount: A:0.31, C:0.23, G:0.11, T:0.35
Consensus pattern (130 bp):
TTTTATTTCTAAAATACTGATTTTCCACCATCAGGGATACTCCAACCCCATTATTTTCGAAGGGA
TACTGCAACCCCGATTTTATTTCCAAAATACCAATTTTTCACAATCAGGAATACTCCAACCTCGA
Found at i:124778 original size:51 final size:51
Alignment explanation
Indices: 124669--124786 Score: 164
Period size: 51 Copynumber: 2.3 Consensus size: 51
124659 TTATTTTCGA
*
124669 AGGGATACTCAAACCCCGATTTTATTTCCAAAATACCGATTTTTCACAATC
1 AGGGATACTCCAACCCCGATTTTATTTCCAAAATACCGATTTTTCACAATC
* * * * * *
124720 AGAGATACTCCAACCTCGATTTTATTTCTAAAATATCGATTTTTCACCATT
1 AGGGATACTCCAACCCCGATTTTATTTCCAAAATACCGATTTTTCACAATC
*
124771 GGGGATACTCCAACCC
1 AGGGATACTCCAACCC
124787 TATTATTTTC
Statistics
Matches: 57, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
51 57 1.00
ACGTcount: A:0.31, C:0.25, G:0.11, T:0.32
Consensus pattern (51 bp):
AGGGATACTCCAACCCCGATTTTATTTCCAAAATACCGATTTTTCACAATC
Found at i:124806 original size:79 final size:79
Alignment explanation
Indices: 124723--125025 Score: 362
Period size: 79 Copynumber: 3.8 Consensus size: 79
124713 CACAATCAGA
* * **
124723 GATACTCCAACCTCGATTTTATTTCTAAAATATCGATTTTTCACCATTGGGGATACTCCAACCCT
1 GATACTCCAACCTCGATTTTATTTCTAAAATATCAATTTTTCACAATCAGGGATACTCCAACCCT
124788 ATTATTTTCGAAGG
66 ATTATTTTCGAAGG
* * *
124802 GATACTGCAACCTCGATTTTATTT-TCAAAATATCAATTTTTCATAATCAGGAATACTCCAACCC
1 GATACTCCAACCTCGATTTTATTTCT-AAAATATCAATTTTTCACAATCAGGGATACTCCAACCC
* *
124866 CATTATTTTCGAGGG
65 TATTATTTTCGAAGG
* * * * * *
124881 GATACTCTAACCCCGATTTTATTTCTAAAATATCGATTTTAT-ACCATC-GAGGACACTCTAACC
1 GATACTCCAACCTCGATTTTATTTCTAAAATATCAATTTT-TCACAATCAG-GGATACTCCAACC
* *
124944 CTGTTATTTTTG-AGAG
64 CTATTATTTTCGAAG-G
* * *
124960 GATACTCCAACCTCGATTTTGTTTCCAAAATATCAATTTTCCACAATCAGGGATACTCCAACCCT
1 GATACTCCAACCTCGATTTTATTTCTAAAATATCAATTTTTCACAATCAGGGATACTCCAACCCT
125025 A
66 A
125026 ATTTTGTTTC
Statistics
Matches: 185, Mismatches: 32, Indels: 14
0.80 0.14 0.06
Matches are distributed among these distances:
78 3 0.02
79 179 0.97
80 3 0.02
ACGTcount: A:0.30, C:0.23, G:0.12, T:0.35
Consensus pattern (79 bp):
GATACTCCAACCTCGATTTTATTTCTAAAATATCAATTTTTCACAATCAGGGATACTCCAACCCT
ATTATTTTCGAAGG
Found at i:124944 original size:158 final size:158
Alignment explanation
Indices: 124723--125023 Score: 444
Period size: 158 Copynumber: 1.9 Consensus size: 158
124713 CACAATCAGA
* * * *
124723 GATACTCCAACCTCGATTTTATTTCTAAAATATCGATTTTTCACCATTGGGGATACTCCAACCCT
1 GATACTCCAACCCCGATTTTATTTCTAAAATATCGATTTTTCACCATCGAGGACACTCCAACCCT
* * * *
124788 ATTATTTTCGA-AGGGATACTGCAACCTCGATTTTATTTTCAAAATATCAATTTTTCATAATCAG
66 ATTATTTTCGAGA-GGATACTCCAACCTCGATTTTATTTCCAAAATATCAATTTTCCACAATCAG
124852 GAATACTCCAACCCCATTATTTTCGAGGG
130 GAATACTCCAACCCCATTATTTTCGAGGG
* *
124881 GATACTCTAACCCCGATTTTATTTCTAAAATATCGATTTTAT-ACCATCGAGGACACTCTAACCC
1 GATACTCCAACCCCGATTTTATTTCTAAAATATCGATTTT-TCACCATCGAGGACACTCCAACCC
* * *
124945 TGTTATTTTTGAGAGGATACTCCAACCTCGATTTTGTTTCCAAAATATCAATTTTCCACAATCAG
65 TATTATTTTCGAGAGGATACTCCAACCTCGATTTTATTTCCAAAATATCAATTTTCCACAATCAG
*
125010 GGATACTCCAACCC
130 GAATACTCCAACCC
125024 TAATTTTGTT
Statistics
Matches: 127, Mismatches: 14, Indels: 4
0.88 0.10 0.03
Matches are distributed among these distances:
158 125 0.98
159 2 0.02
ACGTcount: A:0.30, C:0.24, G:0.12, T:0.35
Consensus pattern (158 bp):
GATACTCCAACCCCGATTTTATTTCTAAAATATCGATTTTTCACCATCGAGGACACTCCAACCCT
ATTATTTTCGAGAGGATACTCCAACCTCGATTTTATTTCCAAAATATCAATTTTCCACAATCAGG
AATACTCCAACCCCATTATTTTCGAGGG
Found at i:125020 original size:51 final size:51
Alignment explanation
Indices: 124959--125058 Score: 159
Period size: 51 Copynumber: 2.0 Consensus size: 51
124949 ATTTTTGAGA
*
124959 GGATACTCCAA-CCTCGATTTTGTTTCCAAAATA-TCAATTTTCCACAATCAG
1 GGATACTCCAACCCT-AATTTTGTTTCCAAAATACT-AATTTTCCACAATCAG
125010 GGATACTCCAACCCTAATTTTGTTTCCAAAATACTAATTTTCCACAATC
1 GGATACTCCAACCCTAATTTTGTTTCCAAAATACTAATTTTCCACAATC
125059 GAAAATACTC
Statistics
Matches: 46, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
51 42 0.91
52 4 0.09
ACGTcount: A:0.32, C:0.26, G:0.08, T:0.34
Consensus pattern (51 bp):
GGATACTCCAACCCTAATTTTGTTTCCAAAATACTAATTTTCCACAATCAG
Found at i:125067 original size:51 final size:52
Alignment explanation
Indices: 124961--125074 Score: 155
Period size: 51 Copynumber: 2.2 Consensus size: 52
124951 TTTTGAGAGG
* **
124961 ATACTCCAA-CCTCGATTTTGTTTCCAAAATATCAATTTTCCACAATCAGGG
1 ATACTCCAACCCTCAATTTTGTTTCCAAAATATCAATTTTCCACAATCAGAA
125012 ATACTCCAACCCT-AATTTTGTTTCCAAAATA-CTAATTTTCCACAATC-GAAA
1 ATACTCCAACCCTCAATTTTGTTTCCAAAATATC-AATTTTCCACAATCAG-AA
125063 ATACTCCAACCC
1 ATACTCCAACCC
125075 CATTCTTCTG
Statistics
Matches: 57, Mismatches: 3, Indels: 6
0.86 0.05 0.09
Matches are distributed among these distances:
50 2 0.04
51 52 0.91
52 3 0.05
ACGTcount: A:0.34, C:0.28, G:0.06, T:0.32
Consensus pattern (52 bp):
ATACTCCAACCCTCAATTTTGTTTCCAAAATATCAATTTTCCACAATCAGAA
Found at i:126835 original size:13 final size:13
Alignment explanation
Indices: 126819--126848 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
126809 ATACATTGTT
126819 CATTGTATCCATA
1 CATTGTATCCATA
*
126832 CATTGTATCGATA
1 CATTGTATCCATA
126845 CATT
1 CATT
126849 TTTCAATGTC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.30, C:0.20, G:0.10, T:0.40
Consensus pattern (13 bp):
CATTGTATCCATA
Found at i:129303 original size:79 final size:79
Alignment explanation
Indices: 129211--129418 Score: 278
Period size: 79 Copynumber: 2.6 Consensus size: 79
129201 TCATTCATGT
* * * * *
129211 TTTTATTTCCAAAACATCAATTTTTTACAATCGAGGATACTCCAACCTCGTTATTTCTGAA-GGG
1 TTTTATTTTCAAAACATCAATTTTTTATAATCGGGGATACTCCAACCCCGTTATTTC-CAAGGGG
*
129275 ATACTTCAACCCCGG
65 ATACTCCAACCCCGG
* *
129290 TTTTATTTTCAAAATACCAATTTTTCT-TAATCGGGGATACTCCAACCCCGTTATTTCCAAGGGG
1 TTTTATTTTCAAAACATCAATTTTT-TATAATCGGGGATACTCCAACCCCGTTATTTCCAAGGGG
129354 ATACTCCAACCCCGG
65 ATACTCCAACCCCGG
**
129369 TTTTA-TTTCTAAAACATCAATTTTCCATAATCGGGGATACTCCAACCCCG
1 TTTTATTTTC-AAAACATCAATTTTTTATAATCGGGGATACTCCAACCCCG
129419 GTTTTATTTC
Statistics
Matches: 113, Mismatches: 12, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
78 6 0.05
79 106 0.94
80 1 0.01
ACGTcount: A:0.28, C:0.25, G:0.12, T:0.34
Consensus pattern (79 bp):
TTTTATTTTCAAAACATCAATTTTTTATAATCGGGGATACTCCAACCCCGTTATTTCCAAGGGGA
TACTCCAACCCCGG
Found at i:129455 original size:50 final size:51
Alignment explanation
Indices: 129350--129468 Score: 177
Period size: 50 Copynumber: 2.4 Consensus size: 51
129340 TTATTTCCAA
*
129350 GGGGATACTCCAACCCCGGTTTTATTTCTAAAACATCAATTTTCCATAATC
1 GGGGATACTCCAACCCCGGTTTTATTTCTAAAACATCAATTTTCCACAATC
* * * *
129401 GGGGATACTCCAACCCCGGTTTTATTTCT-AAACATCGATTTTTCACCATT
1 GGGGATACTCCAACCCCGGTTTTATTTCTAAAACATCAATTTTCCACAATC
*
129451 GGGGATACTCTAACCCCG
1 GGGGATACTCCAACCCCG
129469 TTATTTCCAA
Statistics
Matches: 62, Mismatches: 6, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
50 33 0.53
51 29 0.47
ACGTcount: A:0.26, C:0.27, G:0.15, T:0.32
Consensus pattern (51 bp):
GGGGATACTCCAACCCCGGTTTTATTTCTAAAACATCAATTTTCCACAATC
Found at i:129539 original size:51 final size:51
Alignment explanation
Indices: 129479--129598 Score: 186
Period size: 51 Copynumber: 2.4 Consensus size: 51
129469 TTATTTCCAA
*
129479 GGGGATACTCCAACCCCGGTTTTATTTCTAAAACATCAATTTTTCACAATC
1 GGGGATACTCCAACCCCGATTTTATTTCTAAAACATCAATTTTTCACAATC
** * *
129530 GGGGATACTCCAACTACGATTTTATTTTTAAAACATCAATTTTTCACACTC
1 GGGGATACTCCAACCCCGATTTTATTTCTAAAACATCAATTTTTCACAATC
*
129581 GGGGATACTCTAACCCCG
1 GGGGATACTCCAACCCCG
129599 TTATTTCATC
Statistics
Matches: 61, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
51 61 1.00
ACGTcount: A:0.29, C:0.25, G:0.13, T:0.33
Consensus pattern (51 bp):
GGGGATACTCCAACCCCGATTTTATTTCTAAAACATCAATTTTTCACAATC
Found at i:129614 original size:28 final size:27
Alignment explanation
Indices: 129578--129651 Score: 112
Period size: 28 Copynumber: 2.7 Consensus size: 27
129568 ATTTTTCACA
129578 CTCGGGGATACTCTAACCCCGTTATTT
1 CTCGGGGATACTCTAACCCCGTTATTT
129605 CATCGGGGATACTCTAACCCCGTTATTT
1 C-TCGGGGATACTCTAACCCCGTTATTT
* *
129633 CTGAGGGGATACTCCAACC
1 CT-CGGGGATACTCTAACC
129652 TTGACTTTAT
Statistics
Matches: 43, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
27 2 0.05
28 41 0.95
ACGTcount: A:0.22, C:0.30, G:0.20, T:0.28
Consensus pattern (27 bp):
CTCGGGGATACTCTAACCCCGTTATTT
Found at i:129624 original size:130 final size:130
Alignment explanation
Indices: 129272--129626 Score: 509
Period size: 129 Copynumber: 2.7 Consensus size: 130
129262 TATTTCTGAA
* * * * ** * *
129272 GGGATACTTCAACCCCGGTTTTATTTTCAAAATACCAATTTTTCTTAATCGGGGATACTCCAACC
1 GGGATACTCCAACCCCGGTTTTATTTTTAAAACATCAATTTTTCACACTCGGGGATACTCTAACC
*
129337 CCGTTATTTCCAAGGGGATACTCCAACCCCGGTTTTATTTCTAAAACATCAATTTTCCATAATCG
66 CCGTTATTTCCAAGGGGATACTCCAACCCCGGTTTTATTTCTAAAACATCAATTTTCCACAATCG
* * *
129402 GGGATACTCCAACCCCGGTTTTATTTCT-AAACATCGATTTTTCAC-CATTGGGGATACTCTAAC
1 GGGATACTCCAACCCCGGTTTTATTTTTAAAACATCAATTTTTCACAC-TCGGGGATACTCTAAC
*
129465 CCCGTTATTTCCAAGGGGATACTCCAACCCCGGTTTTATTTCTAAAACATCAATTTTTCACAATC
65 CCCGTTATTTCCAAGGGGATACTCCAACCCCGGTTTTATTTCTAAAACATCAATTTTCCACAATC
129530 G
130 G
** *
129531 GGGATACTCCAACTACGATTTTATTTTTAAAACATCAATTTTTCACACTCGGGGATACTCTAACC
1 GGGATACTCCAACCCCGGTTTTATTTTTAAAACATCAATTTTTCACACTCGGGGATACTCTAACC
* *
129596 CCGTTATTT-CATCGGGGATACTCTAACCCCG
66 CCGTTATTTCCA-AGGGGATACTCCAACCCCG
129627 TTATTTCTGA
Statistics
Matches: 200, Mismatches: 21, Indels: 8
0.87 0.09 0.03
Matches are distributed among these distances:
129 116 0.58
130 83 0.41
131 1 0.00
ACGTcount: A:0.27, C:0.26, G:0.14, T:0.33
Consensus pattern (130 bp):
GGGATACTCCAACCCCGGTTTTATTTTTAAAACATCAATTTTTCACACTCGGGGATACTCTAACC
CCGTTATTTCCAAGGGGATACTCCAACCCCGGTTTTATTTCTAAAACATCAATTTTCCACAATCG
Found at i:129689 original size:79 final size:77
Alignment explanation
Indices: 129606--129866 Score: 265
Period size: 79 Copynumber: 3.3 Consensus size: 77
129596 CCGTTATTTC
* * * *
129606 ATCGGGGATACTCTAACCCCGTTATTTCTGAGGGGATACTCCAACCTTGACTTTATTTCTAAAAT
1 ATCGGGGATACTCCAACCCCGTTATTTCTGAGGGGATACTCCAACC-CGATTTTATTTCTAAAAC
* *
129671 ATTGATTTCTCACA
65 ATCGATTT-TCATA
** * * *
129685 ATCGGGGATACTCCAACCCTATTATTT-TCGCGGGAATACTCCATTCCCGATTTTATTT-TCAAA
1 ATCGGGGATACTCCAACCCCGTTATTTCT-GAGGGGATACTCCA-ACCCGATTTTATTTCT-AAA
129748 ACATCGATTTTCTATA
63 ACATCGATTTTC-ATA
** ** *
129764 ATCGGGGATACTCCAACCTTGTTATTTCCAAGGGGATACTCCAACCCCGATTTTTATTTCTAGAA
1 ATCGGGGATACTCCAACCCCGTTATTTCTGAGGGGATACTCCAA-CCCGA-TTTTATTTCTAAAA
129829 CATCGATTTTCCATA
64 CATCGATTTT-CATA
* *
129844 ATCGGGGATACTCTAGCCCCGTT
1 ATCGGGGATACTCCAACCCCGTT
129867 GTTATCTCCA
Statistics
Matches: 150, Mismatches: 23, Indels: 17
0.79 0.12 0.09
Matches are distributed among these distances:
78 4 0.03
79 99 0.66
80 45 0.30
81 2 0.01
ACGTcount: A:0.26, C:0.25, G:0.15, T:0.34
Consensus pattern (77 bp):
ATCGGGGATACTCCAACCCCGTTATTTCTGAGGGGATACTCCAACCCGATTTTATTTCTAAAACA
TCGATTTTCATA
Found at i:129724 original size:107 final size:106
Alignment explanation
Indices: 129530--129725 Score: 243
Period size: 107 Copynumber: 1.8 Consensus size: 106
129520 TTTCACAATC
* * * * *
129530 GGGGATACTCCAACTACGATTTTATTTTTAAAACATCAATTTTTCACACTCGGGGATACTCTAAC
1 GGGGATACTCCAACTACGACTTTATTTCTAAAACATCAATTTCTCACAATCGGGGATACTCCAAC
*
129595 CCCGTTATTTCATCGGGGATACTCTAACCCCGTTATTTCTGA
66 CCCATTATTT-ATCGGGGATACTCTAACCCCGTTATTTCTGA
* * **
129637 GGGGATACTCCAACCT-TGACTTTATTTCTAAAATATTGATTTCTCACAATCGGGGATACTCCAA
1 GGGGATACTCCAA-CTACGACTTTATTTCTAAAACATCAATTTCTCACAATCGGGGATACTCCAA
*
129701 CCCTATTATTT-TCGCGGGAATACTC
65 CCCCATTATTTATCG-GGG-ATACTC
129726 CATTCCCGAT
Statistics
Matches: 75, Mismatches: 11, Indels: 6
0.82 0.12 0.07
Matches are distributed among these distances:
105 3 0.04
106 3 0.04
107 67 0.89
108 2 0.03
ACGTcount: A:0.27, C:0.24, G:0.15, T:0.34
Consensus pattern (106 bp):
GGGGATACTCCAACTACGACTTTATTTCTAAAACATCAATTTCTCACAATCGGGGATACTCCAAC
CCCATTATTTATCGGGGATACTCTAACCCCGTTATTTCTGA
Found at i:142174 original size:1 final size:1
Alignment explanation
Indices: 142170--142232 Score: 81
Period size: 1 Copynumber: 63.0 Consensus size: 1
142160 TTCTTTTTTT
* * * * *
142170 AAAAAAACAAAAAAAACAAAAAAACAAAAAAACAAAAAAAAAAAAACAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
142233 GAGAAAAGAA
Statistics
Matches: 52, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
1 52 1.00
ACGTcount: A:0.92, C:0.08, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:142183 original size:8 final size:8
Alignment explanation
Indices: 142170--142230 Score: 92
Period size: 8 Copynumber: 7.9 Consensus size: 8
142160 TTCTTTTTTT
142170 AAAAAAAC
1 AAAAAAAC
142178 AAAAAAAAC
1 -AAAAAAAC
142187 AAAAAAAC
1 AAAAAAAC
142195 AAAAAAAC
1 AAAAAAAC
142203 -AAAAAA-
1 AAAAAAAC
142209 AAAAAAAC
1 AAAAAAAC
142217 AAAAAAA-
1 AAAAAAAC
142224 AAAAAAA
1 AAAAAAA
142231 AAGAGAAAAG
Statistics
Matches: 50, Mismatches: 0, Indels: 6
0.89 0.00 0.11
Matches are distributed among these distances:
7 19 0.38
8 23 0.46
9 8 0.16
ACGTcount: A:0.92, C:0.08, G:0.00, T:0.00
Consensus pattern (8 bp):
AAAAAAAC
Found at i:142192 original size:16 final size:15
Alignment explanation
Indices: 142171--142230 Score: 95
Period size: 15 Copynumber: 3.9 Consensus size: 15
142161 TCTTTTTTTA
142171 AAAAAACAAAAAAAAC
1 AAAAAA-AAAAAAAAC
142187 AAAAAAACAAAAAAAC
1 AAAAAAA-AAAAAAAC
142203 -AAAAAAAAAAAAAC
1 AAAAAAAAAAAAAAC
142217 AAAAAAAAAAAAAA
1 AAAAAAAAAAAAAA
142231 AAGAGAAAAG
Statistics
Matches: 42, Mismatches: 0, Indels: 5
0.89 0.00 0.11
Matches are distributed among these distances:
14 8 0.19
15 20 0.48
16 14 0.33
ACGTcount: A:0.92, C:0.08, G:0.00, T:0.00
Consensus pattern (15 bp):
AAAAAAAAAAAAAAC
Found at i:143430 original size:61 final size:62
Alignment explanation
Indices: 143213--143842 Score: 606
Period size: 61 Copynumber: 10.6 Consensus size: 62
143203 TCTCCTTTCA
* *
143213 CTTTCTAGTCCTTAAAGAGCAGGATGCC-TTTTCTTTTTAAAGCCCACACAAGTTGGTGGCA-
1 CTTTCTAGTCCTCAAAGAGCAGGACGCCTTTTTC-TTTTAAAGCCCACACAAGTTGGTGGCAC
* * *
143274 -TTTCTCAGTCCTCAAAAAGTAGGACG-C-----CTTTTAAAACCCACACAAGTTGGTGGCAC
1 CTTTCT-AGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTAAAGCCCACACAAGTTGGTGGCAC
* * * *
143330 TTTTCTAGTCCTCAAAGAGCAAGACG-CTTTTTCCTTTTAAAGCCCACACAAGTCGGTGGTAC
1 CTTTCTAGTCCTCAAAGAGCAGGACGCCTTTTT-CTTTTAAAGCCCACACAAGTTGGTGGCAC
* * ** *
143392 CTTT-TAGTCCTCGAAGAGCAGGACGCCTTTTTCTTTTAAAGCCCATACAAGTTTATTGCA-
1 CTTTCTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTAAAGCCCACACAAGTTGGTGGCAC
* * * * * *
143452 -TTTCCCAGTGCTCACAGAACAGGATG-C-----CTTTTAAAGCCCATACAAGTTGGTGGCA-
1 CTTT-CTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTAAAGCCCACACAAGTTGGTGGCAC
* *
143507 CTTTCCAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTAAAGCCCACACAAGTCGGTGGCAC
1 CTTTCTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTAAAGCCCACACAAGTTGGTGGCAC
* * * *
143569 C-TTCTAGTCCTCGAAGAGTAGGGCGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCA-
1 CTTTCTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTAAAGCCCACACAAGTTGGTGGCAC
* *
143629 -TTTCCTAGTCCTCAAAGAGCAGAACG-C----T-TTTTAAAGCCCACATAAGTTGGTGGCA-
1 CTTT-CTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTAAAGCCCACACAAGTTGGTGGCAC
* * * *
143684 CTTTCCAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCATACAAGCTGGTGGCAC
1 CTTTCTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTAAAGCCCACACAAGTTGGTGGCAC
* * * * * *
143746 C-TTC-AGTCCCCAAAGAGCAGGACACCTTCTCCTTTTAAAGCCTATACAAGTTGGTGGCA-
1 CTTTCTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTAAAGCCCACACAAGTTGGTGGCAC
* * * *
143805 CTTTTTAGTCCTCAAAGAGCAAGATGCCTTTTCCTTTT
1 CTTTCTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTT
143843 CTCCTTTGCC
Statistics
Matches: 473, Mismatches: 64, Indels: 64
0.79 0.11 0.11
Matches are distributed among these distances:
55 115 0.24
56 27 0.06
57 5 0.01
59 4 0.01
60 62 0.13
61 223 0.47
62 37 0.08
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.29
Consensus pattern (62 bp):
CTTTCTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTAAAGCCCACACAAGTTGGTGGCAC
Found at i:143597 original size:116 final size:116
Alignment explanation
Indices: 143211--143825 Score: 506
Period size: 116 Copynumber: 5.2 Consensus size: 116
143201 TTTCTCCTTT
* * *
143211 CACTTTCTAGTCCTTAAAGAGCAGGATGCCTTTTCTTTTTAAAGCCCACACAAGTTGGTGGCA-T
1 CACTTTCTAGTCCTCAAAGAGCAGG--G-C--TGCCTTTTAAAGCCCACACAAGTTGGTGGCACT
* * *
143275 TTCTCAGTCCTCAAAAAGTAGGACG-C----CTTTTAAAACCCACACAAGTTGGTGG
61 TTC-CAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGG
* * * *
143327 CACTTTTCTAGTCCTCAAAGAGCAAGACGCTTTTTCCTTTTAAAGCCCACACAAGTCGGTGGTAC
1 CAC-TTTCTAGTCCTCAAAGAGC-AG-GGC---TGCCTTTTAAAGCCCACACAAGTTGGTGGCA-
* * * ** *
143392 CTTT-TAGTCCTCGAAGAGCAGGACGCCTTTTTCTTTTAAAGCCCATACAAGTTTATTG
59 CTTTCCAGTCCTCAAAGAGCAGGACGCC-TTTTCTTTTAAAGCCCACACAAGTTGGTGG
* * * * * *
143450 CA-TTTCCCAGTGCTCACAGAACA-GGATGCCTTTTAAAGCCCATACAAGTTGGTGGCACTTTCC
1 CACTTT-CTAGTCCTCAAAGAGCAGGGCTGCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTCC
*
143513 AGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTAAAGCCCACACAAGTCGGTGG
65 AGTCCTCAAAGAGCAGGACGCC-TTTTCTTTTAAAGCCCACACAAGTTGGTGG
* * * *
143566 CACCTTCTAGTCCTCGAAGAGTAGGGCGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCA-T
1 CACTTTCTAGTCCTCAAAGAGCA-GG-G-C--TGCCTTTTAAAGCCCACACAAGTTGGTGGCACT
* *
143630 TTCCTAGTCCTCAAAGAGCAGAACG-C---T-TTTTAAAGCCCACATAAGTTGGTGG
61 TTCC-AGTCCTCAAAGAGCAGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGG
* * * * *
143682 CACTTTCCAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCATACAAGCTGGTGGCACC
1 CACTTTCTAGTCCTCAAAGAGCAGG--G-C--TGCCTTTTAAAGCCCACACAAGTTGGTGGCACT
* * * * *
143747 TT-CAGTCCCCAAAGAGCAGGACACCTTCTCCTTTTAAAGCCTATACAAGTTGGTGG
61 TTCCAGTCCTCAAAGAGCAGGACGCCTT-TTCTTTTAAAGCCCACACAAGTTGGTGG
*
143803 CACTTTTTAGTCCTCAAAGAGCA
1 CACTTTCTAGTCCTCAAAGAGCA
143826 AGATGCCTTT
Statistics
Matches: 409, Mismatches: 60, Indels: 55
0.78 0.11 0.10
Matches are distributed among these distances:
115 23 0.06
116 170 0.42
117 71 0.17
118 4 0.01
119 5 0.01
121 53 0.13
122 60 0.15
123 23 0.06
ACGTcount: A:0.26, C:0.27, G:0.19, T:0.28
Consensus pattern (116 bp):
CACTTTCTAGTCCTCAAAGAGCAGGGCTGCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTCCA
GTCCTCAAAGAGCAGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGG
Found at i:143607 original size:177 final size:176
Alignment explanation
Indices: 143215--143804 Score: 790
Period size: 177 Copynumber: 3.3 Consensus size: 176
143205 TCCTTTCACT
* * * *
143215 TTCTAGTCCTTAAAGAGCAGGATGCCTTTTCTTTTTAAAGCCCACACAAGTTGGTGGCATTTCTC
1 TTCTAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCATTTCCC
* * * *
143280 AGTCCTCAAAAAGTAGGACGCCTTTTAAAACCCACACAAGTTGGTGGCACTTTTCTAGTCCTCAA
66 AGTCCTCAAGAA-CAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCAC-TTTCCAGTCCTCAA
* *
143345 AGAGCAAGACG-CTTTTTCCTTTTAAAGCCCACACAAGTCGGTGGTACC
129 AGAGCAGGACGCCTTTTT-CTTTTAAAGCCCACACAAGTCGGTGGCACC
* * * * ** *
143393 TTTTAGTCCTCGAAGAGCAGGACGCCTTTTTCTTTTAAAGCCCATACAAGTTTATTGCATTTCCC
1 TTCTAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCATTTCCC
* * *
143458 AGTGCTCACAGAACAGGATGCCTTTTAAAGCCCATACAAGTTGGTGGCACTTTCCAGTCCTCAAA
66 AGTCCTCA-AGAACAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTCCAGTCCTCAAA
143523 GAGCAGGACGCCTTTTTCTTTTAAAGCCCACACAAGTCGGTGGCACC
130 GAGCAGGACGCCTTTTTCTTTTAAAGCCCACACAAGTCGGTGGCACC
* * * *
143570 TTCTAGTCCTCGAAGAGTAGGGCGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCATTTCCT
1 TTCTAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCATTTCCC
* * * *
143635 AGTCCTCAAAGAGCAGAACGCTTTTTAAAGCCCACATAAGTTGGTGGCACTTTCCAGTCCTCAAA
66 AGTCCTC-AAGAACAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTCCAGTCCTCAAA
* *
143700 GAGCAGGACGCCTTTTCCTTTTAAAGCCCATACAAG-CTGGTGGCACC
130 GAGCAGGACGCCTTTTTCTTTTAAAGCCCACACAAGTC-GGTGGCACC
* * * * *
143747 TTC-AGTCCCCAAAGAGCAGGACACCTTCTCCTTTTAAAGCCTATACAAGTTGGTGGCA
1 TTCTAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCA
143805 CTTTTTAGTC
Statistics
Matches: 362, Mismatches: 46, Indels: 10
0.87 0.11 0.02
Matches are distributed among these distances:
176 48 0.13
177 210 0.58
178 101 0.28
179 3 0.01
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (176 bp):
TTCTAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCATTTCCC
AGTCCTCAAGAACAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTCCAGTCCTCAAAG
AGCAGGACGCCTTTTTCTTTTAAAGCCCACACAAGTCGGTGGCACC
Found at i:144008 original size:41 final size:41
Alignment explanation
Indices: 143871--144093 Score: 162
Period size: 42 Copynumber: 5.2 Consensus size: 41
143861 CAGGACGCCT
* * *
143871 TTTCCTTTTTTCCTTTGTCCTTAAAGAGCAGGACGCACTTCA
1 TTTCCTTTTTTCCTTTGTCCTAAAAGAGCAGGACACA-TTTA
* * * *
143913 TTTCCTTCTTTTCCCTTCTAGTTCTCAAAGAGTAGGACATACTTTA
1 TTTCCTT-TTTT-CCTT-T-GTCCTAAAAGAGCAGGACACA-TTTA
*
143959 TTCTCC-TTTTTCCTTTGTCCTAAAAAAGCAGGACACATTTAA
1 TT-TCCTTTTTTCCTTTGTCCTAAAAGAGCAGGACACATTT-A
* * * * **
144001 TTTCC-TTTTTCCTTTGTCTTCAAAGGGCATGATGCATTTTA
1 TTTCCTTTTTTCCTTTGTCCTAAAAGAGCAGGACACA-TTTA
* ** * *
144042 TTTCCTTTTTTCCTTAGTCCCCAAAGAGCATGACCCATTTTA
1 TTTCCTTTTTTCCTTTGTCCTAAAAGAGCAGGACACA-TTTA
144084 TTCTCCTTTT
1 TT-TCCTTTT
144094 CCTGAATCCT
Statistics
Matches: 148, Mismatches: 24, Indels: 17
0.78 0.13 0.09
Matches are distributed among these distances:
41 36 0.24
42 61 0.41
43 12 0.08
44 8 0.05
45 5 0.03
46 23 0.16
47 3 0.02
ACGTcount: A:0.21, C:0.25, G:0.11, T:0.43
Consensus pattern (41 bp):
TTTCCTTTTTTCCTTTGTCCTAAAAGAGCAGGACACATTTA
Found at i:144108 original size:41 final size:41
Alignment explanation
Indices: 143955--144112 Score: 120
Period size: 41 Copynumber: 3.8 Consensus size: 41
143945 TAGGACATAC
*** * * * *
143955 TTTATTCTCCTTTTTCCTTTGTCCTAAAAAAGCAGGACACAT
1 TTTATT-TCCTTTTTCCTGAATCCTCAAAGAGCATGACCCAT
* *** * * **
143997 TTAATTTCCTTTTTCCTTTGTCTTCAAAGGGCATGATGCAT
1 TTTATTTCCTTTTTCCTGAATCCTCAAAGAGCATGACCCAT
* * *
144038 TTTATTTCCTTTTTTCCTTAGTCCCCAAAGAGCATGACCCAT
1 TTTATTTCC-TTTTTCCTGAATCCTCAAAGAGCATGACCCAT
144080 TTTATTCTCC-TTTTCCTGAATCCTCAAAGAGCA
1 TTTATT-TCCTTTTTCCTGAATCCTCAAAGAGCA
144113 GAACGCCCCC
Statistics
Matches: 96, Mismatches: 18, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
41 56 0.58
42 37 0.39
43 3 0.03
ACGTcount: A:0.23, C:0.25, G:0.11, T:0.42
Consensus pattern (41 bp):
TTTATTTCCTTTTTCCTGAATCCTCAAAGAGCATGACCCAT
Found at i:147237 original size:79 final size:78
Alignment explanation
Indices: 147145--147349 Score: 241
Period size: 79 Copynumber: 2.6 Consensus size: 78
147135 TCATTCATGT
* * * *
147145 TTTTATTTCCAAAACACCAATTTTTTACAATCGGAGATACTCCAACACCGTTATTTTCGAGGAGA
1 TTTTATTTTCAAAACACCAATTTTTCACAATCGGGGATACTCCAAC-CCGTTATTTTCAAGGAGA
*
147210 TACTCCAACCCAGG
65 TACTCCAACCCAGA
* * * * *
147224 TTTTATTTTCAAAATACTAATTTTTCATAATCGGGGATACTCCAACCCGTTATTTTTAAGGGGAT
1 TTTTATTTTCAAAACACCAATTTTTCACAATCGGGGATACTCCAACCCGTTATTTTCAAGGAGAT
* *
147289 ATTCCAACCCCGA
66 ACTCCAACCCAGA
* * *
147302 TTTTA-TTTCTAAAACATCAGTTTTCCACAATCGGGGGATACTCCAACC
1 TTTTATTTTC-AAAACACCAATTTTTCACAATC-GGGGATACTCCAACC
147350 TCGGTTTTAT
Statistics
Matches: 106, Mismatches: 18, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
77 4 0.04
78 47 0.44
79 55 0.52
ACGTcount: A:0.30, C:0.23, G:0.13, T:0.34
Consensus pattern (78 bp):
TTTTATTTTCAAAACACCAATTTTTCACAATCGGGGATACTCCAACCCGTTATTTTCAAGGAGAT
ACTCCAACCCAGA
Found at i:147361 original size:52 final size:51
Alignment explanation
Indices: 147283--147413 Score: 162
Period size: 52 Copynumber: 2.6 Consensus size: 51
147273 TTATTTTTAA
* *
147283 GGGGATATTCCAACCCCGATTTTATTTCTAAAACATC-AGTTTTCCACAATC
1 GGGGATACTCCAACCCCGATTTTATTTCCAAAACATCGA-TTTTCCACAATC
* * *
147334 GGGGGATACTCCAACCTCGGTTTTATTTCCAAAACATCGATTTTCCACCATC
1 -GGGGATACTCCAACCCCGATTTTATTTCCAAAACATCGATTTTCCACAATC
*
147386 GGGGATACTCTAACCCC-A--TTATTTCCAA
1 GGGGATACTCCAACCCCGATTTTATTTCCAA
147414 GGGGATATAT
Statistics
Matches: 70, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
48 10 0.14
51 15 0.21
52 44 0.63
53 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.14, T:0.31
Consensus pattern (51 bp):
GGGGATACTCCAACCCCGATTTTATTTCCAAAACATCGATTTTCCACAATC
Found at i:147508 original size:115 final size:116
Alignment explanation
Indices: 147305--147641 Score: 326
Period size: 115 Copynumber: 3.0 Consensus size: 116
147295 ACCCCGATTT
* *
147305 TATTTCTAAAACATCAGTTTTCCACAATCGGGGGATACTCCAACCTCGGTTTTATTTCCAAAACA
1 TATTTCTAAAACATCAATTTTCCACAATCGGGGGATACTCCAACCTCGATTTTATTTCCAAAACA
* * *
147370 TCGATTTTCCACCATCGGGGATACTCTAACCCCATTATTTCCAAGGGGATA
66 TCAATTTTCCACAATCGGGGATACTCCAACCCCATTATTTCCAAGGGGATA
* *
147421 TATTTCTAAAACATCAATTTTTCACAATC-GGGGATACTCTAA-CTCCGATTTTATTTCCAAAAC
1 TATTTCTAAAACATCAATTTTCCACAATCGGGGGATACTCCAACCT-CGATTTTATTTCCAAAAC
* * * *
147484 ATCAATTTTTCATAATCGGGGATACTCCAACCCCGTTA-TTCTGAA-GGG--A
65 ATCAATTTTCCACAATCGGGGATACTCCAACCCCATTATTTC-CAAGGGGATA
* ** * * *
147533 TACTTC-AACCCCAT-TATTTT---C--GC-GGGGATACTCCAATCCT-GATTTTATTTTCAAAA
1 TATTTCTAA-AACATCAATTTTCCACAATCGGGGGATACTCCAA-CCTCGATTTTATTTCCAAAA
* * * * * *
147589 CACCGATTTTCTATAATCGGGGACACTCCAACCCTATTATTTCCAAGGGGATA
64 CATCAATTTTCCACAATCGGGGATACTCCAACCCCATTATTTCCAAGGGGATA
147642 CTCCAACCCC
Statistics
Matches: 186, Mismatches: 26, Indels: 25
0.78 0.11 0.11
Matches are distributed among these distances:
106 62 0.33
107 6 0.03
108 3 0.02
109 1 0.01
111 7 0.04
112 9 0.05
114 8 0.04
115 63 0.34
116 27 0.15
ACGTcount: A:0.29, C:0.25, G:0.14, T:0.33
Consensus pattern (116 bp):
TATTTCTAAAACATCAATTTTCCACAATCGGGGGATACTCCAACCTCGATTTTATTTCCAAAACA
TCAATTTTCCACAATCGGGGATACTCCAACCCCATTATTTCCAAGGGGATA
Found at i:147637 original size:106 final size:107
Alignment explanation
Indices: 147449--147651 Score: 270
Period size: 106 Copynumber: 1.9 Consensus size: 107
147439 TTTTCACAAT
* * *
147449 CGGGGATACTCTAACTCCGATTTTATTTCCAAAACATCAATTTTTCATAATCGGGGATACTCCAA
1 CGGGGATACTCCAACTCCGATTTTATTTCCAAAACACCAATTTTTCATAATCGGGGACACTCCAA
* * *
147514 CCCCGTTATTCTGAA-GGGATACTTCAACCCCATTATTTTCG
66 CCCCATTATTCTCAAGGGGATACTCCAACCCCATTATTTTCG
* *
147555 CGGGGATACTCCAA-TCCTGATTTTATTTTCAAAACACCGA-TTTTCTATAATCGGGGACACTCC
1 CGGGGATACTCCAACTCC-GATTTTATTTCCAAAACACCAATTTTTC-ATAATCGGGGACACTCC
*
147618 AACCCTATTATT-TCCAAGGGGATACTCCAACCCC
64 AACCCCATTATTCT-CAAGGGGATACTCCAACCCC
147652 GATTTTTATT
Statistics
Matches: 84, Mismatches: 9, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
105 9 0.11
106 60 0.71
107 15 0.18
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.31
Consensus pattern (107 bp):
CGGGGATACTCCAACTCCGATTTTATTTCCAAAACACCAATTTTTCATAATCGGGGACACTCCAA
CCCCATTATTCTCAAGGGGATACTCCAACCCCATTATTTTCG
Found at i:151222 original size:11 final size:10
Alignment explanation
Indices: 151206--151230 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
151196 TGAAGAAGTG
151206 AAAAAAAACC
1 AAAAAAAACC
151216 AAAAAAAACC
1 AAAAAAAACC
151226 AAAAA
1 AAAAA
151231 CAAAATGAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.84, C:0.16, G:0.00, T:0.00
Consensus pattern (10 bp):
AAAAAAAACC
Found at i:152609 original size:30 final size:30
Alignment explanation
Indices: 152565--152654 Score: 135
Period size: 30 Copynumber: 3.0 Consensus size: 30
152555 TTTTTCTTAA
* *
152565 AAGTGCACGACTCAGTGACATGCTTTTTCT
1 AAGTCCACGACTCAGTGACATCCTTTTTCT
* *
152595 AAGTCCATGACTCAGTGACATCCTTTTTCA
1 AAGTCCACGACTCAGTGACATCCTTTTTCT
*
152625 AAGTCCACGACTCAGTGGCATCCTTTTTCT
1 AAGTCCACGACTCAGTGACATCCTTTTTCT
152655 TTTCAAAGTC
Statistics
Matches: 53, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 53 1.00
ACGTcount: A:0.23, C:0.27, G:0.17, T:0.33
Consensus pattern (30 bp):
AAGTCCACGACTCAGTGACATCCTTTTTCT
Found at i:152677 original size:32 final size:34
Alignment explanation
Indices: 152619--152683 Score: 107
Period size: 32 Copynumber: 1.9 Consensus size: 34
152609 GTGACATCCT
152619 TTTTCAAAGTCCACGACTCAGTGGCATCCTTTTTC
1 TTTTCAAAGTCCAC-ACTCAGTGGCATCCTTTTTC
152654 TTTTCAAAGTCCA-A-TCAGTGGCATCCTTTT
1 TTTTCAAAGTCCACACTCAGTGGCATCCTTTT
152684 AAAGCCCACC
Statistics
Matches: 30, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
32 16 0.53
33 1 0.03
35 13 0.43
ACGTcount: A:0.22, C:0.26, G:0.14, T:0.38
Consensus pattern (34 bp):
TTTTCAAAGTCCACACTCAGTGGCATCCTTTTTC
Found at i:152865 original size:29 final size:28
Alignment explanation
Indices: 152668--152947 Score: 205
Period size: 28 Copynumber: 9.9 Consensus size: 28
152658 CAAAGTCCAA
152668 TCAGTGGCATCC-TTTTAAAGCCCACCAA-
1 TCAGTGGCA-CCTTTTTAAAGCCCA-CAAG
** **
152696 TCAGTGGCATCC-TTCCAAAGCCCATGAG
1 TCAGTGGCA-CCTTTTTAAAGCCCACAAG
* ** **
152724 TCAGTGGCATTCTTTCCAAATTCCACAAG
1 TCAGTGGCA-CCTTTTTAAAGCCCACAAG
* * * * *
152753 TCAGTGACATCTTTCTAAAGCCCGCGAG
1 TCAGTGGCACCTTTTTAAAGCCCACAAG
152781 TCAGTGGCACCCTTTTTAAAGCCCACAA-
1 TCAGTGGCA-CCTTTTTAAAGCCCACAAG
152809 TCAGTGGCATCC-TTTTAAAGCCCACAAG
1 TCAGTGGCA-CCTTTTTAAAGCCCACAAG
* *
152837 TCAGTGGCACCATTTTTAAAGGCCGCAAG
1 TCAGTGGCACC-TTTTTAAAGCCCACAAG
* * *
152866 TCAATGGCACCCTTTCAAAGCCCACGAA-
1 TCAGTGGCACCTTTTTAAAGCCCAC-AAG
* * * *
152894 TTAGTGGCA-CTCTTTCAAAACCGACAAG
1 TCAGTGGCACCT-TTTTAAAGCCCACAAG
* *
152922 TAAGTGGCACCCTTTTAAAGCCCACA
1 TCAGTGGCACCTTTTTAAAGCCCACA
152948 CAAGTTGGTG
Statistics
Matches: 204, Mismatches: 38, Indels: 20
0.78 0.15 0.08
Matches are distributed among these distances:
27 21 0.10
28 122 0.60
29 61 0.30
ACGTcount: A:0.29, C:0.30, G:0.17, T:0.24
Consensus pattern (28 bp):
TCAGTGGCACCTTTTTAAAGCCCACAAG
Found at i:152866 original size:113 final size:112
Alignment explanation
Indices: 152666--152947 Score: 298
Period size: 113 Copynumber: 2.5 Consensus size: 112
152656 TTCAAAGTCC
* ** **
152666 AATCAGTGGCATCCTTTTAAAGCCCACCAATCAGTGGCATCCTTCCAAAGCCCATGAGTCAGTGG
1 AATCAGTGGCACCCTTTTAAAGCCCA-CAATCAGTGGCATCCTTTTAAAGCCCACAAGTCAGTGG
* ** * * *
152731 CATTCTTTCCAAATTCCACAAGTCAGTGACA-TCTTTCTAAAGCCCGCG
65 CATCCTTTCCAAAGGCCACAAGTCAATGACACCCTTTC-AAAGCCCACG
*
152779 AGTCAGTGGCACCCTTTTTAAAGCCCACAATCAGTGGCATCCTTTTAAAGCCCACAAGTCAGTGG
1 AATCAGTGGCACCC-TTTTAAAGCCCACAATCAGTGGCATCCTTTTAAAGCCCACAAGTCAGTGG
** * *
152844 CA-CCATTTTTAAAGGCCGCAAGTCAATGGCACCCTTTCAAAGCCCACG
65 CATCC-TTTCCAAAGGCCACAAGTCAATGACACCCTTTCAAAGCCCACG
* * * * * * *
152892 AATTAGTGGCACTCTTTCAAAACCGACAAGTAAGTGGCACCCTTTTAAAGCCCACA
1 AATCAGTGGCACCCTTTTAAAGCCCACAA-TCAGTGGCATCCTTTTAAAGCCCACA
152948 CAAGTTGGTG
Statistics
Matches: 141, Mismatches: 24, Indels: 8
0.82 0.14 0.05
Matches are distributed among these distances:
112 13 0.09
113 111 0.79
114 17 0.12
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.24
Consensus pattern (112 bp):
AATCAGTGGCACCCTTTTAAAGCCCACAATCAGTGGCATCCTTTTAAAGCCCACAAGTCAGTGGC
ATCCTTTCCAAAGGCCACAAGTCAATGACACCCTTTCAAAGCCCACG
Found at i:152921 original size:85 final size:82
Alignment explanation
Indices: 152668--152944 Score: 263
Period size: 85 Copynumber: 3.3 Consensus size: 82
152658 CAAAGTCCAA
* * * * * *
152668 TCAGTGGCATCC-TTTTAAAGCCCACCAA-TCAGTGGCATCCTTCCAAAGCCCATGAGTCAGTGG
1 TCAGTGGCA-CCTTTTTAAAGCCC-GCAAGTCAATGGCACCCTTTCAAAGCCCACGAATCAGTGG
*
152731 CATTCTTTCCAAATTCCACAAG
64 CA-TCTTT-CAAA-ACCACAAG
* * * * * *
152753 TCAGTGACATCTTTCTAAAGCCCGCGAGTCAGTGGCACCCTTTTTAAAGCCCAC-AATCAGTGGC
1 TCAGTGGCACCTTTTTAAAGCCCGCAAGTCAATGGCACCC-TTTCAAAGCCCACGAATCAGTGGC
* *
152817 ATCCTTTTAAAGCCCACAAG
65 AT-CTTTCAAA-ACCACAAG
* *
152837 TCAGTGGCACCATTTTTAAAGGCCGCAAGTCAATGGCACCCTTTCAAAGCCCACGAATTAGTGGC
1 TCAGTGGCACC-TTTTTAAAGCCCGCAAGTCAATGGCACCCTTTCAAAGCCCACGAATCAGTGGC
152902 ACTCTTTCAAAACCGACAAG
65 A-TCTTTCAAAACC-ACAAG
* *
152922 TAAGTGGCACCCTTTTAAAGCCC
1 TCAGTGGCACCTTTTTAAAGCCC
152945 ACACAAGTTG
Statistics
Matches: 158, Mismatches: 26, Indels: 17
0.79 0.13 0.08
Matches are distributed among these distances:
84 47 0.30
85 100 0.63
86 11 0.07
ACGTcount: A:0.28, C:0.30, G:0.18, T:0.25
Consensus pattern (82 bp):
TCAGTGGCACCTTTTTAAAGCCCGCAAGTCAATGGCACCCTTTCAAAGCCCACGAATCAGTGGCA
TCTTTCAAAACCACAAG
Done.