Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold319
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 718924
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
File 1 of 5
Found at i:4461 original size:20 final size:19
Alignment explanation
Indices: 4436--4489 Score: 81
Period size: 19 Copynumber: 2.8 Consensus size: 19
4426 TTCACTTAGG
4436 GTATGTATCGATACAATTGA
1 GTATGTATCGATACAA-TGA
*
4456 GTATGTATCGATATAATGA
1 GTATGTATCGATACAATGA
*
4475 GCATGTATCGATACA
1 GTATGTATCGATACA
4490 TTGTATCGAT
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
19 16 0.52
20 15 0.48
ACGTcount: A:0.35, C:0.11, G:0.20, T:0.33
Consensus pattern (19 bp):
GTATGTATCGATACAATGA
Found at i:4496 original size:13 final size:13
Alignment explanation
Indices: 4478--4502 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
4468 ATAATGAGCA
4478 TGTATCGATACAT
1 TGTATCGATACAT
4491 TGTATCGATACA
1 TGTATCGATACA
4503 GAGCATAATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:18898 original size:19 final size:19
Alignment explanation
Indices: 18874--18911 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
18864 TCCAATCCCC
18874 TTAAAATCATATATTTTGG
1 TTAAAATCATATATTTTGG
18893 TTAAAATCATATATTTTGG
1 TTAAAATCATATATTTTGG
18912 GCCTTTATAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.37, C:0.05, G:0.11, T:0.47
Consensus pattern (19 bp):
TTAAAATCATATATTTTGG
Found at i:19716 original size:23 final size:23
Alignment explanation
Indices: 19664--19716 Score: 61
Period size: 23 Copynumber: 2.3 Consensus size: 23
19654 AAATAATAAT
*
19664 AATAATAAAATACAAAAAAGAGA
1 AATAAAAAAATACAAAAAAGAGA
* * * *
19687 GACAAAAAAATACAAAAAATATA
1 AATAAAAAAATACAAAAAAGAGA
19710 AATAAAA
1 AATAAAA
19717 TAAAAAGTAG
Statistics
Matches: 23, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.75, C:0.06, G:0.06, T:0.13
Consensus pattern (23 bp):
AATAAAAAAATACAAAAAAGAGA
Found at i:22232 original size:97 final size:97
Alignment explanation
Indices: 22100--22283 Score: 289
Period size: 97 Copynumber: 1.9 Consensus size: 97
22090 AAATTTTATT
* * * *
22100 GATACTCTAATCCCGCTTTTAAACTCATTAGAGTTTAAATCTTATTCTCGCTTAAATTGTTATCA
1 GATACTCCAATCCCGCTTTTAAACTCATCAAAGTTTAAATCTTATTCTCGCTTAAATTGTCATCA
22165 TCGAGGACACTCCAAACCCATTCCTCTGAGGG
66 TCGAGGACACTCCAAACCCATTCCTCTGAGGG
*
22197 GATACTCCAA-CCTCGCTTTTAAACTCATCAAAGTTTTAATCTTATTCTCGCTTAAATTGTCATC
1 GATACTCCAATCC-CGCTTTTAAACTCATCAAAGTTTAAATCTTATTCTCGCTTAAATTGTCATC
* *
22261 ATCGGGGACACTCCAACCCCATT
65 ATCGAGGACACTCCAAACCCATT
22284 ATTCCGAAGA
Statistics
Matches: 79, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
96 2 0.03
97 77 0.97
ACGTcount: A:0.28, C:0.27, G:0.12, T:0.34
Consensus pattern (97 bp):
GATACTCCAATCCCGCTTTTAAACTCATCAAAGTTTAAATCTTATTCTCGCTTAAATTGTCATCA
TCGAGGACACTCCAAACCCATTCCTCTGAGGG
Found at i:26749 original size:20 final size:20
Alignment explanation
Indices: 26724--26788 Score: 81
Period size: 20 Copynumber: 3.6 Consensus size: 20
26714 TACAAGCCAA
26724 TGTATCGATACAATTTTTTG
1 TGTATCGATACAATTTTTTG
26744 TGTATCGATAC-A-----T-
1 TGTATCGATACAATTTTTTG
26757 TGTATCGATACAATTTTTTG
1 TGTATCGATACAATTTTTTG
26777 TGTATCGATACA
1 TGTATCGATACA
26789 TTGTATCGAT
Statistics
Matches: 38, Mismatches: 0, Indels: 14
0.73 0.00 0.27
Matches are distributed among these distances:
13 11 0.29
14 2 0.05
19 2 0.05
20 23 0.61
ACGTcount: A:0.28, C:0.12, G:0.15, T:0.45
Consensus pattern (20 bp):
TGTATCGATACAATTTTTTG
Found at i:26762 original size:13 final size:13
Alignment explanation
Indices: 26744--26802 Score: 55
Period size: 13 Copynumber: 4.0 Consensus size: 13
26734 CAATTTTTTG
26744 TGTATCGATACAT
1 TGTATCGATACAT
26757 TGTATCGATACAATTTTTT
1 TGTATCGATAC-A-----T
26776 GTGTATCGATACAT
1 -TGTATCGATACAT
26790 TGTATCGATACAT
1 TGTATCGATACAT
26803 ACTTGGTGTA
Statistics
Matches: 39, Mismatches: 0, Indels: 14
0.74 0.00 0.26
Matches are distributed among these distances:
13 24 0.62
14 2 0.05
19 2 0.05
20 11 0.28
ACGTcount: A:0.29, C:0.14, G:0.15, T:0.42
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:26766 original size:33 final size:33
Alignment explanation
Indices: 26724--26820 Score: 160
Period size: 33 Copynumber: 3.0 Consensus size: 33
26714 TACAAGCCAA
26724 TGTATCGATACAATTTTTTGTGTATCGATACAT
1 TGTATCGATACAATTTTTTGTGTATCGATACAT
26757 TGTATCGATACAATTTTTTGTGTATCGATACAT
1 TGTATCGATACAATTTTTTGTGTATCGATACAT
** *
26790 TGTATCGATAC-ATACTTGGTGTATCGATACA
1 TGTATCGATACAATTTTTTGTGTATCGATACA
26821 AGTTTGGCTA
Statistics
Matches: 61, Mismatches: 3, Indels: 1
0.94 0.05 0.02
Matches are distributed among these distances:
32 17 0.28
33 44 0.72
ACGTcount: A:0.28, C:0.13, G:0.16, T:0.42
Consensus pattern (33 bp):
TGTATCGATACAATTTTTTGTGTATCGATACAT
Found at i:29383 original size:13 final size:13
Alignment explanation
Indices: 29361--29399 Score: 60
Period size: 13 Copynumber: 3.0 Consensus size: 13
29351 ATAATCCCCC
* *
29361 TGTATCGATACAG
1 TGTATTGATACAA
29374 TGTATTGATACAA
1 TGTATTGATACAA
29387 TGTATTGATACAA
1 TGTATTGATACAA
29400 AGAAAAATGT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.36, C:0.10, G:0.18, T:0.36
Consensus pattern (13 bp):
TGTATTGATACAA
Found at i:29456 original size:20 final size:20
Alignment explanation
Indices: 29431--29483 Score: 106
Period size: 20 Copynumber: 2.6 Consensus size: 20
29421 GAATTTCCAG
29431 ATGTATCGATACACAGAAAC
1 ATGTATCGATACACAGAAAC
29451 ATGTATCGATACACAGAAAC
1 ATGTATCGATACACAGAAAC
29471 ATGTATCGATACA
1 ATGTATCGATACA
29484 TTTTGGACAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.43, C:0.19, G:0.15, T:0.23
Consensus pattern (20 bp):
ATGTATCGATACACAGAAAC
Found at i:31218 original size:28 final size:28
Alignment explanation
Indices: 31178--31248 Score: 97
Period size: 28 Copynumber: 2.5 Consensus size: 28
31168 GAATAAAGCT
** *
31178 GGGGTTGGAGTATCCCCTCGGAAGTAAC
1 GGGGTTGGAGTATCCCCGAGGAAATAAC
*
31206 GGGGTTGGAGTATCCCCGATGAAATAAC
1 GGGGTTGGAGTATCCCCGAGGAAATAAC
*
31234 GAGGTTGGAGTATCC
1 GGGGTTGGAGTATCC
31249 TCGATTGTGA
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 38 1.00
ACGTcount: A:0.24, C:0.18, G:0.35, T:0.23
Consensus pattern (28 bp):
GGGGTTGGAGTATCCCCGAGGAAATAAC
Found at i:31293 original size:159 final size:159
Alignment explanation
Indices: 31130--31514 Score: 461
Period size: 160 Copynumber: 2.4 Consensus size: 159
31120 AAATAACGGG
* * ** * ** *
31130 GTTGGAGTATCCCCAATTATGAGAAATCAATATTTTGGGAATAAAGCTGGGGTTGGAGTATCCCC
1 GTTGGAGTATCCCCGATTAT-AGAAATCAACATTTTGAAAATAAAACCAGGATTGGAGTATCCCC
* *
31195 TCGGAAGTAACGGGGTTGGAGTATCCCCGATGAAATAACGAGGTTGGAGTATCCTCGATTGTGAA
65 TCGGAAATAACGGGGTTGGAGTATCCCCGATG-AATAACGAGGTTGGAGTATCCCCGATTGTGAA
31260 -AAATTGGT-ATTTTTGGAAATAAAATCGGA
129 GAAATTGGTGATTTTTGGAAATAAAATCGGA
* *** *
31289 GTTGGAGTATCCCCGATTAAAGGAAAATTGGCGTTTTGAAAATAAAACCAGGATTGGAGTATCCC
1 GTTGGAGTATCCCCGATTATA-G-AAATCAACATTTTGAAAATAAAACCAGGATTGGAGTATCCC
* * *
31354 CTCGGAAATAACGGGGTTGGAGTATCCCCGATGATTAATGGGGTTGGAGTATCCCCGATTGTGAA
64 CTCGGAAATAACGGGGTTGGAGTATCCCCGATGAATAACGAGGTTGGAGTATCCCCGATTGTGAA
*
31419 GAAATTGGTGTTTTTTGGAAATAAAATCGGA
129 GAAATTGGTGATTTTTGGAAATAAAATCGGA
* * *** * *
31450 GTTAGAGTATCCCCGATTATAGAAAATTAGTGTTTTGAAAATAAAATC-GGAGTTGGAATATCCC
1 GTTGGAGTATCCCCGATTATAG-AAATCAACATTTTGAAAATAAAACCAGGA-TTGGAGTATCCC
31514 C
64 C
31515 GATTATGGAG
Statistics
Matches: 196, Mismatches: 25, Indels: 9
0.85 0.11 0.04
Matches are distributed among these distances:
158 1 0.01
159 50 0.26
160 106 0.54
161 39 0.20
ACGTcount: A:0.31, C:0.14, G:0.26, T:0.29
Consensus pattern (159 bp):
GTTGGAGTATCCCCGATTATAGAAATCAACATTTTGAAAATAAAACCAGGATTGGAGTATCCCCT
CGGAAATAACGGGGTTGGAGTATCCCCGATGAATAACGAGGTTGGAGTATCCCCGATTGTGAAGA
AATTGGTGATTTTTGGAAATAAAATCGGA
Found at i:31306 original size:52 final size:52
Alignment explanation
Indices: 31237--31518 Score: 161
Period size: 52 Copynumber: 5.3 Consensus size: 52
31227 AAATAACGAG
*
31237 GTTGGAGTATCCTCGATTGTGAAAAATTGGTATTTTTGGAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTGTGAAAAATTGGTATTTTTGGAAATAAAATCGGA
** * ** * *
31289 GTTGGAGTATCCCCGATTAAAGGAAAATTGG-CGTTTTGAAAATAAAACCAGGA
1 GTTGGAGTATCCCCGATT-GTGAAAAATTGGTATTTTTGGAAATAAAATC-GGA
* **** * * *
31342 -TTGGAGTATCCCC--TCG-GAAATAACGGGGTTGG-AGTATCCCCGATGAT-TAAT-GGG
1 GTTGGAGTATCCCCGATTGTGAAA-AA-----TTGGTA-T-TTTTGGA-AATAAAATCGGA
*
31396 GTTGGAGTATCCCCGATTGTGAAGAAATTGGTGTTTTTTGGAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTGTGAA-AAATTGGT-ATTTTTGGAAATAAAATCGGA
* * * * *
31450 GTTAGAGTATCCCCGATTAT-AGAAAATTAGT-GTTTTGAAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTGTGA-AAAATTGGTATTTTTGGAAATAAAATCGGA
*
31501 GTTGGAATATCCCCGATT
1 GTTGGAGTATCCCCGATT
31519 ATGGAGAATT
Statistics
Matches: 171, Mismatches: 38, Indels: 43
0.68 0.15 0.17
Matches are distributed among these distances:
48 3 0.02
49 2 0.01
50 1 0.01
51 34 0.20
52 46 0.27
53 30 0.18
54 28 0.16
55 13 0.08
56 4 0.02
57 4 0.02
58 5 0.03
59 1 0.01
ACGTcount: A:0.32, C:0.12, G:0.26, T:0.30
Consensus pattern (52 bp):
GTTGGAGTATCCCCGATTGTGAAAAATTGGTATTTTTGGAAATAAAATCGGA
Found at i:31368 original size:160 final size:160
Alignment explanation
Indices: 31181--31514 Score: 512
Period size: 160 Copynumber: 2.1 Consensus size: 160
31171 TAAAGCTGGG
*
31181 GTTGGAGTATCCCCTCGGAAGTAACGGGGTTGGAGTATCCCCGATGAAATAACGAGGTTGGAGTA
1 GTTGGAGTATCCCCTCGGAAATAACGGGGTTGGAGTATCCCCGATG-AATAACGAGGTTGGAGTA
* *
31246 TCCTCGATTGTGAA-AAATTGGT-ATTTTTGGAAATAAAATCGGAGTTGGAGTATCCCCGATTAA
65 TCCCCGATTGTGAAGAAATTGGTGATTTTTGGAAATAAAATCGGAGTTAGAGTATCCCCGATTAA
*
31309 AGGAAAATTGGCGTTTTGAAAATAAAACCAGGA
130 A-GAAAATTAGCGTTTTGAAAATAAAACC-GGA
* * *
31342 -TTGGAGTATCCCCTCGGAAATAACGGGGTTGGAGTATCCCCGATGATTAATGGGGTTGGAGTAT
1 GTTGGAGTATCCCCTCGGAAATAACGGGGTTGGAGTATCCCCGATGAATAACGAGGTTGGAGTAT
* *
31406 CCCCGATTGTGAAGAAATTGGTGTTTTTTGGAAATAAAATCGGAGTTAGAGTATCCCCGATTATA
66 CCCCGATTGTGAAGAAATTGGTGATTTTTGGAAATAAAATCGGAGTTAGAGTATCCCCGATTAAA
* *
31471 GAAAATTAGTGTTTTGAAAATAAAATCGGA
131 GAAAATTAGCGTTTTGAAAATAAAACCGGA
*
31501 GTTGGAATATCCCC
1 GTTGGAGTATCCCC
31515 GATTATGGAG
Statistics
Matches: 158, Mismatches: 12, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
159 31 0.20
160 88 0.56
161 39 0.25
ACGTcount: A:0.31, C:0.14, G:0.27, T:0.28
Consensus pattern (160 bp):
GTTGGAGTATCCCCTCGGAAATAACGGGGTTGGAGTATCCCCGATGAATAACGAGGTTGGAGTAT
CCCCGATTGTGAAGAAATTGGTGATTTTTGGAAATAAAATCGGAGTTAGAGTATCCCCGATTAAA
GAAAATTAGCGTTTTGAAAATAAAACCGGA
Found at i:31375 original size:28 final size:27
Alignment explanation
Indices: 31342--31411 Score: 86
Period size: 27 Copynumber: 2.6 Consensus size: 27
31332 AAAACCAGGA
**
31342 TTGGAGTATCCCCTCGGAAATAACGGGG
1 TTGGAGTATCCCCGAGG-AATAACGGGG
* * *
31370 TTGGAGTATCCCCGATGATTAATGGGG
1 TTGGAGTATCCCCGAGGAATAACGGGG
31397 TTGGAGTATCCCCGA
1 TTGGAGTATCCCCGA
31412 TTGTGAAGAA
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
27 23 0.62
28 14 0.38
ACGTcount: A:0.23, C:0.20, G:0.31, T:0.26
Consensus pattern (27 bp):
TTGGAGTATCCCCGAGGAATAACGGGG
Found at i:31496 original size:51 final size:53
Alignment explanation
Indices: 31400--31526 Score: 161
Period size: 51 Copynumber: 2.4 Consensus size: 53
31390 AATGGGGTTG
* * *
31400 GAGTATCCCCGATTGTGAAGAAATTGGTGTTTTTTGGAAATAAAATCGGAGTTA
1 GAGTATCCCCGATTATGAAGAAATTAGTG-TTTTTGAAAATAAAATCGGAGTTA
*
31454 GAGTATCCCCGATTAT--AGAAAATTAGTG-TTTTGAAAATAAAATCGGAGTTG
1 GAGTATCCCCGATTATGAAG-AAATTAGTGTTTTTGAAAATAAAATCGGAGTTA
* *
31505 GAATATCCCCGATTATGGAGAA
1 GAGTATCCCCGATTATGAAGAA
31527 TTGATAAACT
Statistics
Matches: 65, Mismatches: 5, Indels: 8
0.83 0.06 0.10
Matches are distributed among these distances:
51 36 0.55
52 4 0.06
53 10 0.15
54 15 0.23
ACGTcount: A:0.35, C:0.11, G:0.24, T:0.31
Consensus pattern (53 bp):
GAGTATCCCCGATTATGAAGAAATTAGTGTTTTTGAAAATAAAATCGGAGTTA
Found at i:33904 original size:13 final size:13
Alignment explanation
Indices: 33886--33911 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
33876 ACAAAGATCC
33886 ATGTATCGATACA
1 ATGTATCGATACA
33899 ATGTATCGATACA
1 ATGTATCGATACA
33912 CAGAAAAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:33907 original size:33 final size:33
Alignment explanation
Indices: 33865--33931 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
33855 AAAATTTCCA
***
33865 AATGTATCGATACAAAGATCCATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
*
33898 AATGTATCGATACACAGAAAAATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
33931 A
1 A
33932 TTTCCTTGGC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.43, C:0.16, G:0.15, T:0.25
Consensus pattern (33 bp):
AATGTATCGATACAAAGAAAAATGTATCGATAC
Found at i:33975 original size:19 final size:18
Alignment explanation
Indices: 33951--34018 Score: 83
Period size: 19 Copynumber: 3.9 Consensus size: 18
33941 CAGTAGCTAA
33951 TTATGTATCGATACAATAC
1 TTATGTATCGATACAA-AC
33970 TTATGTATCGATAC--A-
1 TTATGTATCGATACAAAC
33985 -T-TGTATCGATACAAAAC
1 TTATGTATCGATAC-AAAC
34002 TTATGTATCGATACAAA
1 TTATGTATCGATACAAA
34019 TTGTTGAATT
Statistics
Matches: 43, Mismatches: 0, Indels: 13
0.77 0.00 0.23
Matches are distributed among these distances:
13 11 0.26
14 1 0.02
16 2 0.05
18 4 0.09
19 25 0.58
ACGTcount: A:0.38, C:0.15, G:0.12, T:0.35
Consensus pattern (18 bp):
TTATGTATCGATACAAAC
Found at i:33991 original size:13 final size:13
Alignment explanation
Indices: 33973--33997 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
33963 ACAATACTTA
33973 TGTATCGATACAT
1 TGTATCGATACAT
33986 TGTATCGATACA
1 TGTATCGATACA
33998 AAACTTATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:33995 original size:32 final size:32
Alignment explanation
Indices: 33954--34016 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
33944 TAGCTAATTA
*
33954 TGTATCGATACAATACTTATGTATCGATACAT
1 TGTATCGATACAAAACTTATGTATCGATACAT
33986 TGTATCGATACAAAACTTATGTATCGATACA
1 TGTATCGATACAAAACTTATGTATCGATACA
34017 AATTGTTGAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.37, C:0.16, G:0.13, T:0.35
Consensus pattern (32 bp):
TGTATCGATACAAAACTTATGTATCGATACAT
Found at i:34910 original size:55 final size:54
Alignment explanation
Indices: 34826--35558 Score: 1078
Period size: 55 Copynumber: 13.3 Consensus size: 54
34816 ATAAACTGTA
* * * * * *
34826 TCCTGCTCATTGAGGAGTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT-AAAGGTG
34881 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT-AAAGGTG
*
34936 TCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAA-AGGTG
* *
34991 TCCTGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGGGTGGGCTTTGAAAGGTG
1 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTT-AAAGGTG
*
35046 TCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT-AAAGGTG
*
35101 TCCTGCTCTTTGAGGACTAGAAA-ATGCCACCAACTTGTGTGGGCTTTGAAAGGTG
1 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTT-AAAGGTG
*
35156 TCCTGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTAAGAGGTG
1 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTAA-AGGTG
* * *
35211 TCTTGCTCTTTGAGGACTGGAAGGCGCCACCAACTTGTGTGGGCTTTAAAAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT-AAAGGTG
* *
35266 TCCTGCTCTTTGAGGACTGGAAGGCGCCACCAACTTGTGTGGGCTTTAAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAA-AGGTG
*
35321 TCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAA-AGGTG
* *
35376 TCCTGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGGGTGGGCTTTGAAAGGTG
1 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTT-AAAGGTG
* *
35431 TCCTGCTCTTTGGGGATTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAA-AGGTG
*
35486 TCCTACTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAA-AGGTG
35541 TCCTGCTCTTTGAGGACT
1 TCCTGCTCTTTGAGGACT
35559 AAAAAGCGGA
Statistics
Matches: 628, Mismatches: 37, Indels: 26
0.91 0.05 0.04
Matches are distributed among these distances:
54 19 0.03
55 591 0.94
56 18 0.03
ACGTcount: A:0.20, C:0.20, G:0.31, T:0.29
Consensus pattern (54 bp):
TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAGGTG
Found at i:34990 original size:29 final size:28
Alignment explanation
Indices: 34900--35540 Score: 132
Period size: 28 Copynumber: 23.2 Consensus size: 28
34890 TTGAGGACTG
34900 AAAGGTGCCACCAACTTGTGTGGGCTTT
1 AAAGGTGCCACCAACTTGTGTGGGCTTT
** * *
34928 GAAAGGTGTCCTGC-TCTT-TG-GGGAC-TG
1 -AAAGGTG-CCACCAACTTGTGTGGG-CTTT
34955 AAAGGTGCCACCAACTTGTGTGGGCTTT
1 AAAGGTGCCACCAACTTGTGTGGGCTTT
** * * * **
34983 AAGAGGTGTCCTGC-TCTT-TGAGGACTGG
1 AA-AGGTG-CCACCAACTTGTGTGGGCTTT
* *
35011 AAA-ATGCCACCAACTTGGGTGGGCTTT
1 AAAGGTGCCACCAACTTGTGTGGGCTTT
** * *
35038 GAAAGGTGTCCTGC-TCTT-TG-GGGAC-TG
1 -AAAGGTG-CCACCAACTTGTGTGGG-CTTT
35065 AAAGGTGCCACCAACTTGTGTGGGCTTT
1 AAAGGTGCCACCAACTTGTGTGGGCTTT
** * * * **
35093 AAAAGGTGTCCTGC-TCTT-TGAGGACTAG
1 -AAAGGTG-CCACCAACTTGTGTGGGCTTT
*
35121 AAA-ATGCCACCAACTTGTGTGGGCTTT
1 AAAGGTGCCACCAACTTGTGTGGGCTTT
** * * * **
35148 GAAAGGTGTCCTGC-TCTT-TGAGGACTGG
1 -AAAGGTG-CCACCAACTTGTGTGGGCTTT
*
35176 AAA-ATGCCACCAACTTGTGTGGGCTTT
1 AAAGGTGCCACCAACTTGTGTGGGCTTT
*** * * * *
35203 AAGAGGTGTCTTGC-TCTT-TGAGGAC-TG
1 AA-AGGTG-CCACCAACTTGTGTGGGCTTT
* *
35230 GAAGGCGCCACCAACTTGTGTGGGCTTT
1 AAAGGTGCCACCAACTTGTGTGGGCTTT
** * * * *
35258 AAAAGGTGTCCTGC-TCTT-TGAGGAC-TG
1 -AAAGGTG-CCACCAACTTGTGTGGGCTTT
* *
35285 GAAGGCGCCACCAACTTGTGTGGGCTTT
1 AAAGGTGCCACCAACTTGTGTGGGCTTT
** * *
35313 AAGAGGTGTCCTGC-TCTT-TG-GGGAC-TG
1 AA-AGGTG-CCACCAACTTGTGTGGG-CTTT
35340 AAAGGTGCCACCAACTTGTGTGGGCTTT
1 AAAGGTGCCACCAACTTGTGTGGGCTTT
** * * * **
35368 AAGAGGTGTCCTGC-TCTT-TGAGGACTGG
1 AA-AGGTG-CCACCAACTTGTGTGGGCTTT
* *
35396 AAA-ATGCCACCAACTTGGGTGGGCTTT
1 AAAGGTGCCACCAACTTGTGTGGGCTTT
** * * *
35423 GAAAGGTGTCCTGC-TCTT-TG-GGGATTG
1 -AAAGGTG-CCACCAACTTGTGTGGGCTTT
35450 AAAGGTGCCACCAACTTGTGTGGGCTTT
1 AAAGGTGCCACCAACTTGTGTGGGCTTT
* * * *
35478 AAGAGGTGTCCTA-C-TCTT-TGAGGAC-TG
1 AA-AGGTG-CC-ACCAACTTGTGTGGGCTTT
35505 AAAGGTGCCACCAACTTGTGTGGGCTTT
1 AAAGGTGCCACCAACTTGTGTGGGCTTT
35533 AAGAGGTG
1 AA-AGGTG
35541 TCCTGCTCTT
Statistics
Matches: 405, Mismatches: 144, Indels: 126
0.60 0.21 0.19
Matches are distributed among these distances:
24 1 0.00
25 32 0.08
26 81 0.20
27 83 0.20
28 91 0.22
29 84 0.21
30 32 0.08
31 1 0.00
ACGTcount: A:0.21, C:0.20, G:0.31, T:0.29
Consensus pattern (28 bp):
AAAGGTGCCACCAACTTGTGTGGGCTTT
Found at i:36565 original size:12 final size:11
Alignment explanation
Indices: 36542--36598 Score: 53
Period size: 12 Copynumber: 4.8 Consensus size: 11
36532 CTTTTCTCTC
*
36542 TTTTTCTTTGT
1 TTTTTTTTTGT
36553 TTTGTTTTTTGT
1 TTT-TTTTTTGT
36565 TTTTTTTTCCT-T
1 TTTTTTTT--TGT
36577 TTTTTTTTTGCT
1 TTTTTTTTTG-T
36589 CTTTTTTTTT
1 -TTTTTTTTT
36599 TTGAAGAGAA
Statistics
Matches: 39, Mismatches: 1, Indels: 10
0.78 0.02 0.20
Matches are distributed among these distances:
10 1 0.03
11 8 0.21
12 20 0.51
13 10 0.26
ACGTcount: A:0.00, C:0.09, G:0.07, T:0.84
Consensus pattern (11 bp):
TTTTTTTTTGT
Found at i:36570 original size:15 final size:14
Alignment explanation
Indices: 36542--36601 Score: 50
Period size: 15 Copynumber: 4.0 Consensus size: 14
36532 CTTTTCTCTC
*
36542 TTTTTCTTTGTTTTG
1 TTTTT-TTTTTTTTG
36557 TTTTTTGTTTTTTT-
1 TTTTTT-TTTTTTTG
36571 TTCCTTTTTTTTTTTG
1 TT--TTTTTTTTTTTG
*
36587 CTCTTTTTTTTTTTG
1 -TTTTTTTTTTTTTG
36602 AAGAGAAGGT
Statistics
Matches: 38, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
14 3 0.08
15 30 0.79
16 4 0.11
17 1 0.03
ACGTcount: A:0.00, C:0.08, G:0.08, T:0.83
Consensus pattern (14 bp):
TTTTTTTTTTTTTG
Found at i:36571 original size:16 final size:15
Alignment explanation
Indices: 36552--36601 Score: 59
Period size: 15 Copynumber: 3.3 Consensus size: 15
36542 TTTTTCTTTG
36552 TTTTGTT-TTTTGTTT
1 TTTTGTTCTTTT-TTT
36567 TTTT-TTCCTTTTTTT
1 TTTTGTT-CTTTTTTT
*
36582 TTTTGCTCTTTTTTT
1 TTTTGTTCTTTTTTT
36597 TTTTG
1 TTTTG
36602 AAGAGAAGGT
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
14 2 0.06
15 24 0.77
16 5 0.16
ACGTcount: A:0.00, C:0.08, G:0.08, T:0.84
Consensus pattern (15 bp):
TTTTGTTCTTTTTTT
Found at i:49205 original size:28 final size:28
Alignment explanation
Indices: 49165--49236 Score: 99
Period size: 28 Copynumber: 2.6 Consensus size: 28
49155 GGAATAAAGC
** *
49165 CGGGGTTGGAGTATCCCCTCGGAAGTAA
1 CGGGGTTGGAGTATCCCCGAGGAAATAA
*
49193 CGGGGTTGGAGTATCCCCGATGAAATAA
1 CGGGGTTGGAGTATCCCCGAGGAAATAA
*
49221 CGAGGTTGGAGTATCC
1 CGGGGTTGGAGTATCC
49237 TCGATTGTGA
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.24, C:0.19, G:0.35, T:0.22
Consensus pattern (28 bp):
CGGGGTTGGAGTATCCCCGAGGAAATAA
Found at i:49294 original size:52 final size:52
Alignment explanation
Indices: 49225--49506 Score: 152
Period size: 52 Copynumber: 5.3 Consensus size: 52
49215 AAATAACGAG
*
49225 GTTGGAGTATCCTCGATTGTGAAAAATTGGTATTTTTGGAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTGTGAAAAATTGGTATTTTTGGAAATAAAATCGGA
* ** * ** * *
49277 GTTAGAGTATCCCCGATTAAAGGAAAATTGG-CGTTTTGAAAATAAAACCAGGA
1 GTTGGAGTATCCCCGATT-GTGAAAAATTGGTATTTTTGGAAATAAAATC-GGA
* **** * * *
49330 -TTGGAGTATCCCC--TCG-GAAATAACGGGGTTGG-AGTATCACCGATGAT-TAAT-GGG
1 GTTGGAGTATCCCCGATTGTGAAA-AA-----TTGGTA-T-TTTTGGA-AATAAAATCGGA
*
49384 GTTGGAGTATCCCCGATTGTGAAGAAATTGGTGTTTTTTGGAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTGTGAA-AAATTGGT-ATTTTTGGAAATAAAATCGGA
* * * * *
49438 GTTAGAGTATCCCCGATTAT-AGAAAATTAGT-GTTTTGAAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTGTGA-AAAATTGGTATTTTTGGAAATAAAATCGGA
*
49489 GTTGGAATATCCCCGATT
1 GTTGGAGTATCCCCGATT
49507 ATGGAGAATT
Statistics
Matches: 169, Mismatches: 40, Indels: 43
0.67 0.16 0.17
Matches are distributed among these distances:
48 3 0.02
49 2 0.01
50 1 0.01
51 34 0.20
52 44 0.26
53 30 0.18
54 28 0.17
55 13 0.08
56 4 0.02
57 4 0.02
58 5 0.03
59 1 0.01
ACGTcount: A:0.33, C:0.12, G:0.25, T:0.30
Consensus pattern (52 bp):
GTTGGAGTATCCCCGATTGTGAAAAATTGGTATTTTTGGAAATAAAATCGGA
Found at i:49356 original size:160 final size:160
Alignment explanation
Indices: 49157--49502 Score: 518
Period size: 160 Copynumber: 2.2 Consensus size: 160
49147 ATATTTTGGG
* * * *
49157 AATAAAGCCGGGGTTGGAGTATCCCCTCGGAAGTAACGGGGTTGGAGTATCCCCGATGAAATAAC
1 AATAAAACCGGAGTTGGAGTATCCCCTCGGAAATAACGGGGTTGGAGTATCACCGATG-AATAAC
*
49222 GAGGTTGGAGTATCCTCGATTGTGAA-AAATTGGT-ATTTTTGGAAATAAAATCGGAGTTAGAGT
65 GAGGTTGGAGTATCCCCGATTGTGAAGAAATTGGTGATTTTTGGAAATAAAATCGGAGTTAGAGT
*
49285 ATCCCCGATTAAAGGAAAATTGGCGTTTTGAA
130 ATCCCCGATTAAA-GAAAATTAGCGTTTTGAA
* *
49317 AATAAAACCAGGA-TTGGAGTATCCCCTCGGAAATAACGGGGTTGGAGTATCACCGATGATTAAT
1 AATAAAACC-GGAGTTGGAGTATCCCCTCGGAAATAACGGGGTTGGAGTATCACCGATGAATAAC
* *
49381 GGGGTTGGAGTATCCCCGATTGTGAAGAAATTGGTGTTTTTTGGAAATAAAATCGGAGTTAGAGT
65 GAGGTTGGAGTATCCCCGATTGTGAAGAAATTGGTGATTTTTGGAAATAAAATCGGAGTTAGAGT
* *
49446 ATCCCCGATTATAGAAAATTAGTGTTTTGAA
130 ATCCCCGATTAAAGAAAATTAGCGTTTTGAA
* *
49477 AATAAAATCGGAGTTGGAATATCCCC
1 AATAAAACCGGAGTTGGAGTATCCCC
49503 GATTATGGAG
Statistics
Matches: 168, Mismatches: 14, Indels: 8
0.88 0.07 0.04
Matches are distributed among these distances:
159 31 0.18
160 95 0.57
161 42 0.25
ACGTcount: A:0.32, C:0.14, G:0.27, T:0.28
Consensus pattern (160 bp):
AATAAAACCGGAGTTGGAGTATCCCCTCGGAAATAACGGGGTTGGAGTATCACCGATGAATAACG
AGGTTGGAGTATCCCCGATTGTGAAGAAATTGGTGATTTTTGGAAATAAAATCGGAGTTAGAGTA
TCCCCGATTAAAGAAAATTAGCGTTTTGAA
Found at i:49484 original size:51 final size:53
Alignment explanation
Indices: 49388--49514 Score: 161
Period size: 51 Copynumber: 2.4 Consensus size: 53
49378 AATGGGGTTG
* * *
49388 GAGTATCCCCGATTGTGAAGAAATTGGTGTTTTTTGGAAATAAAATCGGAGTTA
1 GAGTATCCCCGATTATGAAGAAATTAGTG-TTTTTGAAAATAAAATCGGAGTTA
*
49442 GAGTATCCCCGATTAT--AGAAAATTAGTG-TTTTGAAAATAAAATCGGAGTTG
1 GAGTATCCCCGATTATGAAG-AAATTAGTGTTTTTGAAAATAAAATCGGAGTTA
* *
49493 GAATATCCCCGATTATGGAGAA
1 GAGTATCCCCGATTATGAAGAA
49515 TTGATAAACT
Statistics
Matches: 65, Mismatches: 5, Indels: 8
0.83 0.06 0.10
Matches are distributed among these distances:
51 36 0.55
52 4 0.06
53 10 0.15
54 15 0.23
ACGTcount: A:0.35, C:0.11, G:0.24, T:0.31
Consensus pattern (53 bp):
GAGTATCCCCGATTATGAAGAAATTAGTGTTTTTGAAAATAAAATCGGAGTTA
Found at i:51893 original size:13 final size:13
Alignment explanation
Indices: 51875--51900 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
51865 ACAAAGATCC
51875 ATGTATCGATACA
1 ATGTATCGATACA
51888 ATGTATCGATACA
1 ATGTATCGATACA
51901 CAGAAAAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:51896 original size:33 final size:33
Alignment explanation
Indices: 51854--51920 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
51844 AAAATTTCCA
***
51854 AATGTATCGATACAAAGATCCATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
*
51887 AATGTATCGATACACAGAAAAATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
51920 A
1 A
51921 TTTCCTTGGC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.43, C:0.16, G:0.15, T:0.25
Consensus pattern (33 bp):
AATGTATCGATACAAAGAAAAATGTATCGATAC
Found at i:51964 original size:19 final size:18
Alignment explanation
Indices: 51940--52007 Score: 83
Period size: 19 Copynumber: 3.9 Consensus size: 18
51930 CAGTAGCTAA
51940 TTATGTATCGATACAATAC
1 TTATGTATCGATACAA-AC
51959 TTATGTATCGATAC--A-
1 TTATGTATCGATACAAAC
51974 -T-TGTATCGATACAAAAC
1 TTATGTATCGATAC-AAAC
51991 TTATGTATCGATACAAA
1 TTATGTATCGATACAAA
52008 TTGTTGAATT
Statistics
Matches: 43, Mismatches: 0, Indels: 13
0.77 0.00 0.23
Matches are distributed among these distances:
13 11 0.26
14 1 0.02
16 2 0.05
18 4 0.09
19 25 0.58
ACGTcount: A:0.38, C:0.15, G:0.12, T:0.35
Consensus pattern (18 bp):
TTATGTATCGATACAAAC
Found at i:51980 original size:13 final size:13
Alignment explanation
Indices: 51962--51986 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
51952 ACAATACTTA
51962 TGTATCGATACAT
1 TGTATCGATACAT
51975 TGTATCGATACA
1 TGTATCGATACA
51987 AAACTTATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:51984 original size:32 final size:32
Alignment explanation
Indices: 51943--52005 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
51933 TAGCTAATTA
*
51943 TGTATCGATACAATACTTATGTATCGATACAT
1 TGTATCGATACAAAACTTATGTATCGATACAT
51975 TGTATCGATACAAAACTTATGTATCGATACA
1 TGTATCGATACAAAACTTATGTATCGATACA
52006 AATTGTTGAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.37, C:0.16, G:0.13, T:0.35
Consensus pattern (32 bp):
TGTATCGATACAAAACTTATGTATCGATACAT
Found at i:53752 original size:15 final size:15
Alignment explanation
Indices: 53732--53762 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
53722 ATTTCGTTTG
*
53732 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
53747 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
53762 G
1 G
53763 GACATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Found at i:56537 original size:24 final size:24
Alignment explanation
Indices: 56509--56557 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
56499 GATGCTCTCG
56509 TCGGTTTTCATTTTAAACAACTCA
1 TCGGTTTTCATTTTAAACAACTCA
56533 TCGGTTTTCATTTTAAACAACTCA
1 TCGGTTTTCATTTTAAACAACTCA
56557 T
1 T
56558 AGTCAAGAGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.29, C:0.20, G:0.08, T:0.43
Consensus pattern (24 bp):
TCGGTTTTCATTTTAAACAACTCA
Found at i:57882 original size:13 final size:13
Alignment explanation
Indices: 57864--57889 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
57854 CAATTTTTTG
57864 TGTATCGATACAT
1 TGTATCGATACAT
57877 TGTATCGATACAT
1 TGTATCGATACAT
57890 ACTTGGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:58404 original size:33 final size:33
Alignment explanation
Indices: 58362--58452 Score: 110
Period size: 33 Copynumber: 2.8 Consensus size: 33
58352 CACTACTTAG
*
58362 TGGCATCCTTTTTCTTCAAATTCCATGACTCAA
1 TGGCATCCTTTTTCTTCAAAGTCCATGACTCAA
** * *
58395 TGGCATCCTTTTTCTTCCCAGTCCATGACTTAG
1 TGGCATCCTTTTTCTTCAAAGTCCATGACTCAA
* * *
58428 TGACTTCCATTTTCTTCAAAGTCCA
1 TGGCATCCTTTTTCTTCAAAGTCCA
58453 CAACTTCGTG
Statistics
Matches: 48, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
33 48 1.00
ACGTcount: A:0.21, C:0.29, G:0.11, T:0.40
Consensus pattern (33 bp):
TGGCATCCTTTTTCTTCAAAGTCCATGACTCAA
Found at i:58504 original size:27 final size:27
Alignment explanation
Indices: 58474--58532 Score: 82
Period size: 27 Copynumber: 2.2 Consensus size: 27
58464 CACTCTTTTT
* *
58474 CCTTTAAAGTTCATAACTCCGTGGCAC
1 CCTTTAAAGTCCACAACTCCGTGGCAC
*
58501 CCTTTTAAGTCCACAACTCCGTGGCAC
1 CCTTTAAAGTCCACAACTCCGTGGCAC
*
58528 TCTTT
1 CCTTT
58533 TTCCTTTTAA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.22, C:0.32, G:0.14, T:0.32
Consensus pattern (27 bp):
CCTTTAAAGTCCACAACTCCGTGGCAC
Found at i:58506 original size:34 final size:33
Alignment explanation
Indices: 58437--59388 Score: 299
Period size: 34 Copynumber: 30.5 Consensus size: 33
58427 GTGACTTCCA
* * *
58437 TTTTCTTCAAAGTCCACAACTTCGTGCCACTCT
1 TTTTCTTTAAAGTCCACAACTCCGTGGCACTCT
* *
58470 TTTTCCTTTAAAGTTCATAACTCCGTGGCAC-C-
1 TTTT-CTTTAAAGTCCACAACTCCGTGGCACTCT
*
58502 ----CTTTTAAGTCCACAACTCCGTGGCACTCT
1 TTTTCTTTAAAGTCCACAACTCCGTGGCACTCT
* * *
58531 TTTTCCTTTTAAGTCCATAACTTCGTGGCA---T
1 TTTT-CTTTAAAGTCCACAACTCCGTGGCACTCT
* *
58562 TTTTCTTTTTAAGTCCACAAACTCCATGGCA----
1 TTTTC-TTTAAAGTCCAC-AACTCCGTGGCACTCT
* * *
58593 TTTT-TTT-AAGTCCACAACTTCTTGGCGC-C-
1 TTTTCTTTAAAGTCCACAACTCCGTGGCACTCT
* * *
58622 ----CTTTTAAGCCCACAACTCCGTGGCACTTT
1 TTTTCTTTAAAGTCCACAACTCCGTGGCACTCT
* * ** *
58651 TTTTCCTTTTAAGTCCATAACTTTGTGGTACTCT
1 TTTT-CTTTAAAGTCCACAACTCCGTGGCACTCT
* * * *
58685 TTTCCCTTTTAAGTCCACAACTCCATGGCACCCT
1 TTT-TCTTTAAAGTCCACAACTCCGTGGCACTCT
* *
58719 TTTTCTTTTAAGTCCACAACTCCATGGCA-TCTT
1 TTTTCTTTAAAGTCCACAACTCCGTGGCACTC-T
* ** *
58752 TTTTCCTTTTAAGTCCACAACTTAGTGGCACTTT
1 TTTT-CTTTAAAGTCCACAACTCCGTGGCACTCT
* * *
58786 TTTTCTTTTTAAGTCAACAACTCTGTGGCAC-C-
1 TTTTC-TTTAAAGTCCACAACTCCGTGGCACTCT
** *
58818 --TT-TTT-AAGTCCACAACTTTGTGGCACGC-
1 TTTTCTTTAAAGTCCACAACTCCGTGGCACTCT
* * *
58846 ---T-TTT-AAGTCCATAACTCCATGGCACCCT
1 TTTTCTTTAAAGTCCACAACTCCGTGGCACTCT
* ** *
58874 TTTTACTTTTTAAGTCCACAACTCTATGGTAC-C-
1 TTTT-C-TTTAAAGTCCACAACTCCGTGGCACTCT
* *
58907 ----CTTTTAAGTACACAACTCCGTGGCAC-C-
1 TTTTCTTTAAAGTCCACAACTCCGTGGCACTCT
* *
58934 ----CTTTTAAGTCCACAACTTCGTGGCA-TC-
1 TTTTCTTTAAAGTCCACAACTCCGTGGCACTCT
* * *
58961 TTTTCTTTTTAAGTCCACAACTCCGTTGTAC-CTT
1 TTTTC-TTTAAAGTCCACAACTCCGTGGCACTC-T
* ** *
58995 TTTTCCTTTTAAGTCCACAACTTAGTGGCACTTT
1 TTTT-CTTTAAAGTCCACAACTCCGTGGCACTCT
* **
59029 TTTTCCTTTTAAGTCCACAACTCTTTGGCA-TCT
1 TTTT-CTTTAAAGTCCACAACTCCGTGGCACTCT
*
59062 TTTTCTTTTCAAAG-CTCACAAACTCCATGGCAC-C-
1 TTTTC-TTT-AAAGTC-CAC-AACTCCGTGGCACTCT
*
59096 ----GTTT-AAGTCCACAA-TGCCGTGGCAC-C-
1 TTTTCTTTAAAGTCCACAACT-CCGTGGCACTCT
* *
59122 ----CTTTTAAGTCCACAACTCCGTGGCACCCT
1 TTTTCTTTAAAGTCCACAACTCCGTGGCACTCT
* * * * *
59151 TTTTCTTTTAAGTCTATAACTTCGTTGCA-TCCT
1 TTTTCTTTAAAGTCCACAACTCCGTGGCACT-CT
* * * *
59184 TTTTCCTTTTAAGTCCACAGCTCAGTGGCACCCT
1 TTTT-CTTTAAAGTCCACAACTCCGTGGCACTCT
** *
59218 TTTTCCTTGT-AAGTCCACAACTCAATGGCACCCT
1 TTTT-CTT-TAAAGTCCACAACTCCGTGGCACTCT
** * * *
59252 TTTTCCTTTTGAGTCCATAACTCGGTGGCAC-AT
1 TTTT-CTTTAAAGTCCACAACTCCGTGGCACTCT
* *
59285 TTTTCTTTTCAAAG-CTCATAACTTCGTGGCACTC-
1 TTTTC-TTT-AAAGTC-CACAACTCCGTGGCACTCT
*
59319 ---T-TTT-AAGTCCACAACTCTGTGGCAC-C-
1 TTTTCTTTAAAGTCCACAACTCCGTGGCACTCT
*
59345 ----CTTTTAAGTCCACAACTCCGTGGCAC-CT
1 TTTTCTTTAAAGTCCACAACTCCGTGGCACTCT
*
59373 CTTTC--TAAAGTCCACA
1 TTTTCTTTAAAGTCCACA
59389 CAAGTCGGTG
Statistics
Matches: 734, Mismatches: 107, Indels: 159
0.73 0.11 0.16
Matches are distributed among these distances:
25 1 0.00
26 21 0.03
27 198 0.27
28 18 0.02
29 9 0.01
30 13 0.02
31 23 0.03
32 36 0.05
33 83 0.11
34 300 0.41
35 32 0.04
ACGTcount: A:0.21, C:0.29, G:0.12, T:0.38
Consensus pattern (33 bp):
TTTTCTTTAAAGTCCACAACTCCGTGGCACTCT
Found at i:58529 original size:61 final size:61
Alignment explanation
Indices: 58446--59388 Score: 375
Period size: 68 Copynumber: 15.1 Consensus size: 61
58436 ATTTTCTTCA
* * * * *
58446 AAGTCCACAACTTCGTGCCACTCTTTTTCCTTTAAAGTTCATAACTCCGTGGCACCCTTTT
1 AAGTCCACAACTCCGTGGCACTCTTTTTCCTTTTAAGTCCACAACTCCGTGGCACCCTTTT
* * * *
58507 AAGTCCACAACTCCGTGGCACTCTTTTTCCTTTTAAGTCCATAACTTCGTGGCATTTTTCTTTTT
1 AAGTCCACAACTCCGTGGCACTCTTTTTCCTTTTAAGTCCACAACTCCGTGGCA----CCCTTTT
* * * *
58572 AAGTCCACAAACTCCATGGCA-----TTT--TTTTAAGTCCACAACTTCTTGGCGCCCTTTT
1 AAGTCCAC-AACTCCGTGGCACTCTTTTTCCTTTTAAGTCCACAACTCCGTGGCACCCTTTT
* * * ** *
58627 AAGCCCACAACTCCGTGGCACTTTTTTTCCTTTTAAGTCCATAACTTTGTGGTACTCTTTTCCCT
1 AAGTCCACAACTCCGTGGCACTCTTTTTCCTTTTAAGTCCACAACTCCGTGG----C---ACCCT
58692 TTT
59 TTT
* * *
58695 AAGTCCACAACTCCATGGCACCCTTTTT-CTTTTAAGTCCACAACTCCATGGCATCTTTTTTCCT
1 AAGTCCACAACTCCGTGGCACTCTTTTTCCTTTTAAGTCCACAACTCCGTGGCA-C------CCT
58759 TTT
59 TTT
** * * * * *
58762 AAGTCCACAACTTAGTGGCACTTTTTTTCTTTTTAAGTCAACAACTCTGTGGCACCTTTTT
1 AAGTCCACAACTCCGTGGCACTCTTTTTCCTTTTAAGTCCACAACTCCGTGGCACCCTTTT
** * * *
58823 AAGTCCACAACTTTGTGGCA--C-----GCTTTTAAGTCCATAACTCCATGGCACCCTTTT
1 AAGTCCACAACTCCGTGGCACTCTTTTTCCTTTTAAGTCCACAACTCCGTGGCACCCTTTT
* * **** * * ** *
58877 TACTTTTTAAGTCC---ACAACTCTATGGTACCCTTTTAAGTACACAACTCCGTGGCACCCTTTT
1 AAGTCCACAACTCCGTGGC-ACTCT-T--TTTCCTTTTAAGTCCACAACTCCGTGGCACCCTTTT
* * * *
58939 AAGTCCACAACTTCGTGGCA-TC-TTTTCTTTTTAAGTCCACAACTCCGTTGTACCTTTTTTCCT
1 AAGTCCACAACTCCGTGGCACTCTTTTTCCTTTTAAGTCCACAACTCCGTGGCA-C------CCT
59002 TTT
59 TTT
** * ** *
59005 AAGTCCACAACTTAGTGGCACTTTTTTTCCTTTTAAGTCCACAACTCTTTGGCATCTTTTTCTTT
1 AAGTCCACAACTCCGTGGCACTCTTTTTCCTTTTAAGTCCACAACTCCGTGGCA-C----CCTTT
59070 T
61 T
* *
59071 CAAAG-CTCACAAACTCCATGGCA--------CCGTTTAAGTCCACAA-TGCCGTGGCACCCTTT
1 --AAGTC-CAC-AACTCCGTGGCACTCTTTTTCCTTTTAAGTCCACAACT-CCGTGGCACCCTTT
59126 T
61 T
* * * * *
59127 AAGTCCACAACTCCGTGGCACCCTTTTT-CTTTTAAGTCTATAACTTCGTTGCATCCTTTTTCCT
1 AAGTCCACAACTCCGTGGCACTCTTTTTCCTTTTAAGTCCACAACTCCGTGGCA--C-----CCT
59191 TTT
59 TTT
* * * * **
59194 AAGTCCACAGCTCAGTGGCACCCTTTTTCCTTGTAAGTCCACAACTCAATGGCACCCTTTTTCCT
1 AAGTCCACAACTCCGTGGCACTCTTTTTCCTTTTAAGTCCACAACTCCGTGGCA--C-----CCT
59259 TTT
59 TTT
* * * * * * *
59262 GAGTCCATAACTCGGTGGCAC-ATTTTT-CTTTTCAAAG-CTCATAACTTCGTGGCACTCTTTT
1 AAGTCCACAACTCCGTGGCACTCTTTTTCCTTTT--AAGTC-CACAACTCCGTGGCACCCTTTT
*
59323 AAGTCCACAACTCTGTGGCA--C-----CCTTTTAAGTCCACAACTCCGTGGCACCTCTTTCT
1 AAGTCCACAACTCCGTGGCACTCTTTTTCCTTTTAAGTCCACAACTCCGTGGCACC-CTTT-T
59379 AAAGTCCACA
1 -AAGTCCACA
59389 CAAGTCGGTG
Statistics
Matches: 675, Mismatches: 126, Indels: 166
0.70 0.13 0.17
Matches are distributed among these distances:
51 1 0.00
52 1 0.00
53 11 0.02
54 66 0.10
55 18 0.03
56 11 0.02
57 9 0.01
59 47 0.07
60 21 0.03
61 141 0.21
62 36 0.05
63 3 0.00
64 1 0.00
65 15 0.02
66 50 0.07
67 89 0.13
68 146 0.22
69 9 0.01
ACGTcount: A:0.21, C:0.29, G:0.12, T:0.37
Consensus pattern (61 bp):
AAGTCCACAACTCCGTGGCACTCTTTTTCCTTTTAAGTCCACAACTCCGTGGCACCCTTTT
Found at i:58629 original size:120 final size:122
Alignment explanation
Indices: 58495--58714 Score: 356
Period size: 120 Copynumber: 1.8 Consensus size: 122
58485 CATAACTCCG
*
58495 TGGCACCCTTTTAAGTCCACAACTCCGTGGCACTCTTTTTCCTTTTAAGTCCATAACTTCGTGGC
1 TGGCACCCTTTTAAGCCCACAACTCCGTGGCACTCTTTTTCCTTTTAAGTCCATAACTTCGTGGC
*
58560 A-T-TTTT-CTTTTTAAGTCCACAAACTCCATGGCATTTTTTTAAGTCCACAACTTCT
66 ACTCTTTTCCCTTTTAAGTCCAC-AACTCCATGGCATTTTTTTAAGTCCACAACTTCT
* * * *
58615 TGGCGCCCTTTTAAGCCCACAACTCCGTGGCACTTTTTTTCCTTTTAAGTCCATAACTTTGTGGT
1 TGGCACCCTTTTAAGCCCACAACTCCGTGGCACTCTTTTTCCTTTTAAGTCCATAACTTCGTGGC
58680 ACTCTTTTCCCTTTTAAGTCCACAACTCCATGGCA
66 ACTCTTTTCCCTTTTAAGTCCACAACTCCATGGCA
58715 CCCTTTTTCT
Statistics
Matches: 91, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
120 61 0.67
121 1 0.01
122 16 0.18
123 13 0.14
ACGTcount: A:0.20, C:0.29, G:0.13, T:0.38
Consensus pattern (122 bp):
TGGCACCCTTTTAAGCCCACAACTCCGTGGCACTCTTTTTCCTTTTAAGTCCATAACTTCGTGGC
ACTCTTTTCCCTTTTAAGTCCACAACTCCATGGCATTTTTTTAAGTCCACAACTTCT
Found at i:58765 original size:101 final size:100
Alignment explanation
Indices: 58622--59293 Score: 281
Period size: 101 Copynumber: 7.0 Consensus size: 100
58612 TCTTGGCGCC
* * * *
58622 CTTTTAAGCCCACAACTCCGTGGCACTTTTTTTCCTTTTAAGTCCATAACTTTGTGGTACTCTTT
1 CTTTTAAGCCCACAACTCCATGGCACTTTTTTTCCTTTTAAGTCCACAACTTAGTGGCACTCTTT
*
58687 TCCCTTTTAAGTCCACAACTCCATGGCACCCTTTTT
66 TCCCTTTTAAGTCAACAACTCCATGGCA-CCTTTTT
* *
58723 CTTTTAAGTCCACAACTCCATGGCA-TCTTTTTTCCTTTTAAGTCCACAACTTAGTGGCACTTTT
1 CTTTTAAGCCCACAACTCCATGGCACT-TTTTTTCCTTTTAAGTCCACAACTTAGTGGCACTCTT
* * **
58787 TTTCTTTTTAAGTCAACAACTCTGTGGCACC----T
65 TTCCCTTTTAAGTCAACAACTCCATGGCACCTTTTT
* *** * * * *
58819 -TTTTAAGTCCACAACTTTGTGGCAC-------GCTTTTAAGTCCATAACTCCA-TGGCACCCTT
1 CTTTTAAGCCCACAACTCCATGGCACTTTTTTTCCTTTTAAGTCCACAACT-TAGTGGCACTC-T
* * * * *
58875 TTTACTTTTTAAGTCCACAACTCTATGGTACC-----
64 TTTCCCTTTTAAGTCAACAACTCCATGGCACCTTTTT
** * *
58907 CTTTTAAGTACACAACTCCGTGGCAC-------CCTTTTAAGTCCACAACTTCGTGGCA-TCTTT
1 CTTTTAAGCCCACAACTCCATGGCACTTTTTTTCCTTTTAAGTCCACAACTTAGTGGCACTCTTT
* * * * *
58964 T-CTTTTTAAGTCCACAACTCCGTTGTACCTTTTTT
66 TCCCTTTTAAGTCAACAACTCCATGGCACC-TTTTT
* * *
58999 CCTTTTAAGTCCACAACT-TAGTGGCACTTTTTTTCCTTTTAAGTCCACAACTCT-TTGGCA-TC
1 -CTTTTAAGCCCACAACTCCA-TGGCACTTTTTTTCCTTTTAAGTCCACAACT-TAGTGGCACTC
*
59061 TTTT-TCTTTTCAAAGCTC-ACAAACTCCATGGCA-C-----
63 TTTTCCCTTTT--AAG-TCAAC-AACTCCATGGCACCTTTTT
* * * ** *
59095 CGTTTAAGTCCACAA-TGCCGTGGCAC-------CCTTTTAAGTCCACAACTCCGTGGCACCCTT
1 CTTTTAAGCCCACAACT-CCATGGCACTTTTTTTCCTTTTAAGTCCACAACTTAGTGGCACTCTT
* * * * * *
59152 TT-TCTTTTAAGTCTATAACTTCGTTGCATCCTTTTT
65 TTCCCTTTTAAGTCAACAACTCCATGGCA-CCTTTTT
* * ** * * * *
59188 CCTTTTAAGTCCACAGCT-CAGTGGCACCCTTTTTCCTTGTAAGTCCACAACTCAATGGCACCCT
1 -CTTTTAAGCCCACAACTCCA-TGGCACTTTTTTTCCTTTTAAGTCCACAACTTAGTGGCACTCT
* * * * ** *
59252 TTTTCCTTTTGAGTCCATAACTCGGTGGCACATTTTT
64 TTTCCCTTTTAAGTCAACAACTCCATGGCACCTTTTT
59289 CTTTT
1 CTTTT
59294 CAAAGCTCAT
Statistics
Matches: 456, Mismatches: 66, Indels: 99
0.73 0.11 0.16
Matches are distributed among these distances:
86 36 0.08
87 8 0.02
88 47 0.10
89 84 0.18
93 23 0.05
94 20 0.04
95 42 0.09
96 1 0.00
100 41 0.09
101 117 0.26
102 26 0.06
103 11 0.02
ACGTcount: A:0.21, C:0.28, G:0.12, T:0.39
Consensus pattern (100 bp):
CTTTTAAGCCCACAACTCCATGGCACTTTTTTTCCTTTTAAGTCCACAACTTAGTGGCACTCTTT
TCCCTTTTAAGTCAACAACTCCATGGCACCTTTTT
Found at i:58888 original size:62 final size:62
Alignment explanation
Indices: 58817--58938 Score: 181
Period size: 62 Copynumber: 2.0 Consensus size: 62
58807 TCTGTGGCAC
* * * * *
58817 CTTTTTAAGTCCACAACTTTGTGGCACGCTTTTAAGTCCATAACTCCATGGCACCCTTTTTA
1 CTTTTTAAGTCCACAACTCTATGGCACCCTTTTAAGTACACAACTCCATGGCACCCTTTTTA
* *
58879 CTTTTTAAGTCCACAACTCTATGGTACCCTTTTAAGTACACAACTCCGTGGCACCCTTTT
1 CTTTTTAAGTCCACAACTCTATGGCACCCTTTTAAGTACACAACTCCATGGCACCCTTTT
58939 AAGTCCACAA
Statistics
Matches: 53, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
62 53 1.00
ACGTcount: A:0.23, C:0.29, G:0.12, T:0.36
Consensus pattern (62 bp):
CTTTTTAAGTCCACAACTCTATGGCACCCTTTTAAGTACACAACTCCATGGCACCCTTTTTA
Found at i:58912 original size:89 final size:86
Alignment explanation
Indices: 58756--59164 Score: 297
Period size: 89 Copynumber: 4.5 Consensus size: 86
58746 CATCTTTTTT
* * * * *
58756 CCTTTTAAGTCCACAACTTAGTGGCACTTTTTTTCTTTTTAAGTCAACAACTCTGTGGCACCTTT
1 CCTTTTAAGTCCACAACTCA-TGGCAC-CTTTTTCTTTTTAAGTCCACAACTCTATGGCACCCTT
* **
58821 TTAAGTCCACAACTTTGTGGCAC
64 TTAAGTACACAACTCCGTGGCAC
* * *
58844 GCTTTTAAGTCCATAACTCCATGGCACCCTTTTTACTTTTTAAGTCCACAACTCTATGGTACCCT
1 CCTTTTAAGTCCACAACT-CATGGCA-CCTTTTT-CTTTTTAAGTCCACAACTCTATGGCACCCT
58909 TTTAAGTACACAACTCCGTGGCAC
63 TTTAAGTACACAACTCCGTGGCAC
* * ** * *
58933 CCTTTTAAGTCCACAACTTCGTGGCATC-TTTTCTTTTTAAGTCCACAACTCCGTTGTACCTTTT
1 CCTTTTAAGTCCACAAC-TCATGGCACCTTTTTCTTTTTAAGTCCACAACTCTATGGCA-C----
* **
58997 TTCCTTTTAAGTCCACAACTTAGTGGCAC
60 --CCTTTTAAGTACACAACTCCGTGGCAC
* * * *
59026 TTTTTTTCCTTTTAAGTCCACAACTCTTTGGCATCTTTTTCTTTTCAAAG-CTCACAAACTCCAT
1 -------CCTTTTAAGTCCACAACTC-ATGGCACCTTTTTCTTTT-TAAGTC-CAC-AACTCTAT
* *
59090 GGCA-CCGTTTAAGTCCACAA-TGCCGTGGCAC
55 GGCACCCTTTTAAGTACACAACT-CCGTGGCAC
*
59121 CCTTTTAAGTCCACAACTCCGTGGCACCCTTTTTC-TTTTAAGTC
1 CCTTTTAAGTCCACAACT-CATGGCA-CCTTTTTCTTTTTAAGTC
59165 TATAACTTCG
Statistics
Matches: 262, Mismatches: 32, Indels: 54
0.75 0.09 0.16
Matches are distributed among these distances:
86 23 0.09
87 8 0.03
88 54 0.21
89 78 0.30
90 1 0.00
93 24 0.09
94 1 0.00
95 22 0.08
99 2 0.01
100 24 0.09
101 10 0.04
102 6 0.02
103 9 0.03
ACGTcount: A:0.22, C:0.28, G:0.12, T:0.37
Consensus pattern (86 bp):
CCTTTTAAGTCCACAACTCATGGCACCTTTTTCTTTTTAAGTCCACAACTCTATGGCACCCTTTT
AAGTACACAACTCCGTGGCAC
Found at i:59033 original size:277 final size:278
Alignment explanation
Indices: 58595--59186 Score: 697
Period size: 277 Copynumber: 2.1 Consensus size: 278
58585 CCATGGCATT
* *
58595 TTTTTAAGTCCACAACTTCTTGGCGCCCTTTTAAGCCCACAACTCCGTGGCACTTTTTTTCCTTT
1 TTTTTAAGTCCACAACTTCTTGGCACCCTTTTAAGCACACAACTCCGTGGCAC------TCCTTT
* * *
58660 TAAGTCCATAACTTTGTGGTACTCTTTTCCCTTTTAAGTCCACAACTCCATGGCACCCTTTTTCT
60 TAAGTCCACAACTTCGTGGCACTCTTTTCCCTTTTAAGTCCACAACTCCATGGCACCCTTTTTCT
*
58725 TTTAAGTCCACAACTCCATGGCATCTTTTTTCCTTTTAAGTCCACAACT-TAGTGGCACTTTTTT
125 TTTAAGTCCACAACTCCATGGCATCTTTTTTCCTTTTAAGTCCACAACTCT-GTGGCA-TCTTTT
* ** * ** *
58789 TCTTTT-TAAG-TCA-ACAACTCTGTGGCACCTTTTTAAGTCCACAACT-TTGTGGCACGCTTTT
188 TCTTTTCAAAGCTCACA-AACTCCATGGCACC-GTTTAAGTCCACAA-TGCCGTGGCACCCTTTT
*
58850 AAGTCCATAACTCCATGGCACCCTTTTTAC
250 AAGTCCACAACTCCATGGCACCCTTTTT-C
* *
58880 TTTTTAAGTCCACAAC-TCTATGGTACCCTTTTAAGTACACAACTCCGTGGCAC-CCTTTTAAGT
1 TTTTTAAGTCCACAACTTCT-TGGCACCCTTTTAAGCACACAACTCCGTGGCACTCCTTTTAAGT
* * * * *
58943 CCACAACTTCGTGGCA-TCTTTT-CTTTTTAAGTCCACAACTCCGTTGTACCTTTTTTCCTTTTA
65 CCACAACTTCGTGGCACTCTTTTCCCTTTTAAGTCCACAACTCCATGGCACCCTTTTT-CTTTTA
* *
59006 AGTCCACAACT-TAGTGGCA-CTTTTTTTCCTTTTAAGTCCACAACTCTTTGGCATCTTTTTCTT
129 AGTCCACAACTCCA-TGGCATC-TTTTTTCCTTTTAAGTCCACAACTCTGTGGCATCTTTTTCTT
59069 TTCAAAGCTCACAAACTCCATGGCACCGTTTAAGTCCACAATGCCGTGGCACCCTTTTAAGTCCA
192 TTCAAAGCTCACAAACTCCATGGCACCGTTTAAGTCCACAATGCCGTGGCACCCTTTTAAGTCCA
*
59134 CAACTCCGTGGCACCCTTTTTC
257 CAACTCCATGGCACCCTTTTTC
* * *
59156 -TTTTAAGTCTATAACTTCGTT-GCATCCTTTT
1 TTTTTAAGTCCACAACTTC-TTGGCACCCTTTT
59187 TCCTTTTAAG
Statistics
Matches: 268, Mismatches: 28, Indels: 32
0.82 0.09 0.10
Matches are distributed among these distances:
275 21 0.08
276 47 0.18
277 112 0.42
278 39 0.15
279 1 0.00
284 3 0.01
285 45 0.17
ACGTcount: A:0.21, C:0.28, G:0.12, T:0.39
Consensus pattern (278 bp):
TTTTTAAGTCCACAACTTCTTGGCACCCTTTTAAGCACACAACTCCGTGGCACTCCTTTTAAGTC
CACAACTTCGTGGCACTCTTTTCCCTTTTAAGTCCACAACTCCATGGCACCCTTTTTCTTTTAAG
TCCACAACTCCATGGCATCTTTTTTCCTTTTAAGTCCACAACTCTGTGGCATCTTTTTCTTTTCA
AAGCTCACAAACTCCATGGCACCGTTTAAGTCCACAATGCCGTGGCACCCTTTTAAGTCCACAAC
TCCATGGCACCCTTTTTC
Found at i:59237 original size:155 final size:154
Alignment explanation
Indices: 58492--59249 Score: 372
Period size: 155 Copynumber: 4.9 Consensus size: 154
58482 GTTCATAACT
* * *
58492 CCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACTCTTTTTCCTTTTAAGTCCATAACTTCGT
1 CCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTTCCTTTTAAGTCCACAACTTAGT
*
58557 GGCA---TTTTTCTTTTTAAGTCCACAAACTCCA-TGGCA---TTTT-TT-T-AAG-TCCACAAC
66 GGCACTCTTTTTCCTTTTAAGTCCAC-AACT-CAGTGGCACCTTTTTCTTGTAAAGCT-CACAAC
* * * *
58611 TTC-TTGGCGCCCTTTTAAGCCCACAACT-
128 -TCAATGGC-ACCGTTTAAGTCCACAA-TG
* ** * * *
58639 CCGTGGCACTTTTTTTCCTTTTAAGTCCATAACTTTGTGGTACTCTTTTCCCTTTTAAGTCCACA
1 CCGTGGCAC-------CCTTTTAAGTCCACAACTCCGTGGCACCCTTTTTCCTTTTAAGTCCACA
* * * *
58704 ACTCCA-TGGCACCCTTTTT-CTTTTAAGTCCACAACTCCA-TGGCATCTTTTTTCCTT-TTAAG
59 ACT-TAGTGGCACTCTTTTTCCTTTTAAGTCCACAACT-CAGTGGCA-CCTTTTT-CTTGTAAAG
* * * *
58765 -TCCACAACTTAGTGGCACTTTTTTTCTTTTTAAGTCAACAACT-
120 CT-CACAACTCAATGGCAC-------C-GTTTAAGTCCACAA-TG
* * ** * * *
58808 CTGTGGCACCTTTTTAAGTCCACAACTTTGTGGCA--C-----GCTTTTAAGTCCATAACTCCA-
1 CCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTTCCTTTTAAGTCCACAACT-TAG
* * * *
58865 TGGCACCCTTTTTACTTTTTAAGTCCACAACTCTA-TGGTACC-----CTT-TTAAG-TACACAA
65 TGGCACTCTTTTT-CCTTTTAAGTCCACAACTC-AGTGGCACCTTTTTCTTGTAAAGCT-CACAA
** *
58922 CTCCGTGGCACCCTTTTAAGTCCACAACT-
127 CTCAATGGCA-CCGTTTAAGTCCACAA-TG
* * * * *
58951 TCGTGGCATCTTTTCTTTTTAAGTCCACAACTCCGTTGTACCTTTTTTCCTTTTAAGTCCACAAC
1 CCGTGGCA-C----CCTTTTAAGTCCACAACTCCGTGGCACCCTTTTTCCTTTTAAGTCCACAAC
* ** * *
59016 TTAGTGGCACTTTTTTTCCTTTTAAGTCCACAACTCTTTGGCATCTTTTTCTTTTCAAAGCTCAC
61 TTAGTGGCACTCTTTTTCCTTTTAAGTCCACAACTCAGTGGCACCTTTTTCTTGT-AAAGCTCAC
*
59081 AAACTCCATGGCACCGTTTAAGTCCACAATG
125 -AACTCAATGGCACCGTTTAAGTCCACAATG
* * *
59112 CCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTT-CTTTTAAGTCTATAACTTCGT
1 CCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTTCCTTTTAAGTCCACAACTTAGT
* *
59176 TGCA-TCCTTTTTCCTTTTAAGTCCACAGCTCAGTGGCACCCTTTTTCCTTGT-AAG-TCCACAA
66 GGCACT-CTTTTTCCTTTTAAGTCCACAACTCAGTGGCA-CCTTTTT-CTTGTAAAGCT-CACAA
59238 CTCAATGGCACC
127 CTCAATGGCACC
59250 CTTTTTCCTT
Statistics
Matches: 490, Mismatches: 62, Indels: 111
0.74 0.09 0.17
Matches are distributed among these distances:
143 21 0.04
144 2 0.00
147 9 0.02
148 22 0.04
150 22 0.04
151 1 0.00
154 90 0.18
155 126 0.26
156 50 0.10
157 30 0.06
159 7 0.01
160 4 0.01
161 33 0.07
162 50 0.10
168 1 0.00
169 22 0.04
ACGTcount: A:0.21, C:0.29, G:0.12, T:0.38
Consensus pattern (154 bp):
CCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTTCCTTTTAAGTCCACAACTTAGT
GGCACTCTTTTTCCTTTTAAGTCCACAACTCAGTGGCACCTTTTTCTTGTAAAGCTCACAACTCA
ATGGCACCGTTTAAGTCCACAATG
Found at i:59290 original size:223 final size:219
Alignment explanation
Indices: 58688--59378 Score: 661
Period size: 223 Copynumber: 3.2 Consensus size: 219
58678 GTACTCTTTT
* * *
58688 CCCTTTTAAGTCCACAACTCCATGGCACCCTTTTTCTTTTAAGTCCACAACTCCATGGCATCTTT
1 CCCTTTTAAGTCCACAACTCCGTGGCACCC--TTTCTTTTAAGTCCACAACTTCGTGGCATC--T
* ** * * * **
58753 TTTCCTTTTAAGTCCACAACTTAGTGGCACTTTTTTTCTTTTTAAGTCAACAACTCTGTGGCA-C
62 TTTCCTTTTAAGTCCACAACTCAGTGGCACCCTTTTTCCTTGTAAGTCCACAACTCAATGGCACC
** * *
58817 C----T--TTTTAAGTCCACAACTTTGTGGCA-C----GCTTTT--AAG-TCCATAACTCCATGG
127 CTTTTTCCTTTTAAGTCCACAACTCGGTGGCATCTTTTTCTTTTCAAAGCT-CAAAACTCCATGG
* * *
58868 CACCCTTTTTACTTTTTAAGTCCACAACTCTATGGTA
191 CA--C----T-C-GTTTAAGTCCACAACTCTGTGGCA
*
58905 CCCTTTTAAGTACACAACTCCGTGGCA-CC---CTTTTAAGTCCACAACTTCGTGGCATCTTTTC
1 CCCTTTTAAGTCCACAACTCCGTGGCACCCTTTCTTTTAAGTCCACAACTTCGTGGCATCTTTTC
* * * * * * * * **
58966 TTTTTAAGTCCACAACTCCGTTGTACCTTTTTTCCTTTTAAGTCCACAACTTAGTGGCACTTTTT
66 CTTTTAAGTCCACAACTCAGTGGCACCCTTTTTCCTTGTAAGTCCACAACTCAATGGCACCCTTT
**
59031 TTCCTTTTAAGTCCACAACTCTTTGGCATCTTTTTCTTTTCAAAGCTCACAAACTCCATGGCAC-
131 TTCCTTTTAAGTCCACAACTCGGTGGCATCTTTTTCTTTTCAAAGCTCA-AAACTCCATGGCACT
*
59095 CGTTTAAGTCCACAA-TGCCGTGGCA
195 CGTTTAAGTCCACAACT-CTGTGGCA
* * *
59120 CCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTTCTTTTAAGTCTATAACTTCGTTGCATCCTT
1 CCCTTTTAAGTCCACAACTCCGTGGCACCC--TTTCTTTTAAGTCCACAACTTCGTGGCAT-C-T
*
59185 TTTCCTTTTAAGTCCACAGCTCAGTGGCACCCTTTTTCCTTGTAAGTCCACAACTCAATGGCACC
62 TTTCCTTTTAAGTCCACAACTCAGTGGCACCCTTTTTCCTTGTAAGTCCACAACTCAATGGCACC
* * * * *
59250 CTTTTTCCTTTTGAGTCCATAACTCGGTGGCA-CATTTTTCTTTTCAAAGCTCATAACTTCGTGG
127 CTTTTTCCTTTTAAGTCCACAACTCGGTGGCATC-TTTTTCTTTTCAAAGCTCAAAACTCCATGG
*
59314 CACTCTTTTAAGTCCACAACTCTGTGGCA
191 CACTCGTTTAAGTCCACAACTCTGTGGCA
59343 CCCTTTTAAGTCCACAACTCCGTGGCACCTCTTTCT
1 CCCTTTTAAGTCCACAACTCCGTGGCACC-CTTTCT
59379 AAAGTCCACA
Statistics
Matches: 397, Mismatches: 48, Indels: 53
0.80 0.10 0.11
Matches are distributed among these distances:
209 54 0.14
211 25 0.06
214 2 0.01
215 44 0.11
216 27 0.07
217 26 0.07
221 28 0.07
222 19 0.05
223 157 0.40
224 15 0.04
ACGTcount: A:0.21, C:0.29, G:0.12, T:0.37
Consensus pattern (219 bp):
CCCTTTTAAGTCCACAACTCCGTGGCACCCTTTCTTTTAAGTCCACAACTTCGTGGCATCTTTTC
CTTTTAAGTCCACAACTCAGTGGCACCCTTTTTCCTTGTAAGTCCACAACTCAATGGCACCCTTT
TTCCTTTTAAGTCCACAACTCGGTGGCATCTTTTTCTTTTCAAAGCTCAAAACTCCATGGCACTC
GTTTAAGTCCACAACTCTGTGGCA
Found at i:59418 original size:33 final size:33
Alignment explanation
Indices: 59355--59475 Score: 147
Period size: 33 Copynumber: 3.7 Consensus size: 33
59345 CTTTTAAGTC
* *
59355 CACAACTCCGTGGC-ACCTCTT-TCTAAAGTCCA
1 CACAAGTCGGTGGCAACC-CTTCTCTAAAGTCCA
59387 CACAAGTCGGTGGCAACCCTTCTCTAAAGTCCA
1 CACAAGTCGGTGGCAACCCTTCTCTAAAGTCCA
* * ** *
59420 CATAAGTCGGTGGCAGCTATTCTCTAAAGCCCA
1 CACAAGTCGGTGGCAACCCTTCTCTAAAGTCCA
*
59453 CACAAGTCAGTGGCAACCCTTCT
1 CACAAGTCGGTGGCAACCCTTCT
59476 AAGCCCAATG
Statistics
Matches: 75, Mismatches: 12, Indels: 3
0.83 0.13 0.03
Matches are distributed among these distances:
32 15 0.20
33 60 0.80
ACGTcount: A:0.26, C:0.33, G:0.17, T:0.23
Consensus pattern (33 bp):
CACAAGTCGGTGGCAACCCTTCTCTAAAGTCCA
Found at i:60439 original size:105 final size:105
Alignment explanation
Indices: 60257--60468 Score: 424
Period size: 105 Copynumber: 2.0 Consensus size: 105
60247 GTAAAACAAA
60257 GAAAATAACAGAAAAATTTACACAAGATAAACGCACGATAATACATAGAAAGAAGGACGATCAAA
1 GAAAATAACAGAAAAATTTACACAAGATAAACGCACGATAATACATAGAAAGAAGGACGATCAAA
60322 GTGTGTCTCACGATTTTTTTTATTAGTGATGTATAATTGT
66 GTGTGTCTCACGATTTTTTTTATTAGTGATGTATAATTGT
60362 GAAAATAACAGAAAAATTTACACAAGATAAACGCACGATAATACATAGAAAGAAGGACGATCAAA
1 GAAAATAACAGAAAAATTTACACAAGATAAACGCACGATAATACATAGAAAGAAGGACGATCAAA
60427 GTGTGTCTCACGATTTTTTTTATTAGTGATGTATAATTGT
66 GTGTGTCTCACGATTTTTTTTATTAGTGATGTATAATTGT
60467 GA
1 GA
60469 TAACAATGTT
Statistics
Matches: 107, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
105 107 1.00
ACGTcount: A:0.43, C:0.11, G:0.17, T:0.28
Consensus pattern (105 bp):
GAAAATAACAGAAAAATTTACACAAGATAAACGCACGATAATACATAGAAAGAAGGACGATCAAA
GTGTGTCTCACGATTTTTTTTATTAGTGATGTATAATTGT
Found at i:61003 original size:80 final size:79
Alignment explanation
Indices: 60653--61045 Score: 470
Period size: 79 Copynumber: 5.0 Consensus size: 79
60643 AATGGAGTTG
* * * * *
60653 GAGTATCCTCTCGAAAATAAT-GGGTTAGAGTATCCCAGATGGTGGAAAATTGATGTTTTGGAAA
1 GAGTATCCTCTCAAAAATAATAGGGTTAGAGTATCCCCGATTGTGAAAAATTGATGTTTTAGAAA
*
60717 TAAAATCGGGGTTA
66 TAAAACCGGGGTTA
* * * * * *
60731 GAGTATCCTCTCGAAAATAACAGTGTTGGAGTATCCCCGATTGTGGAAAATTGATGTTTTAGAAG
1 GAGTATCCTCTCAAAAATAATAGGGTTAGAGTATCCCCGATTGTGAAAAATTGATGTTTTAGAAA
*
60796 TAAAGCCGGGGTTA
66 TAAAACCGGGGTTA
* * * * *
60810 GAGTATCCCCTTAAAAATAA-CGAGG-TAGGAGTATCCTCGATTGTGAAAAATCGATGTTTTAGA
1 GAGTATCCTCTCAAAAATAATAG-GGTTA-GAGTATCCCCGATTGTGAAAAATTGATGTTTTAGA
** *
60873 AATAAAGTCAGGGTTA
64 AATAAAACCGGGGTTA
* * * *
60889 GAGTATCCTTTCAAAAATAATGGGGTTGGAGTATCCCCGATTGTGAAAAATTGGTGTTTTAGAAA
1 GAGTATCCTCTCAAAAATAATAGGGTTAGAGTATCCCCGATTGTGAAAAATTGATGTTTTAGAAA
60954 TAAAAACCGGGGTTA
66 T-AAAACCGGGGTTA
* * *
60969 GAGTATCCTCTCAAAAATAATAGGGTTAGAGTATCCCCGATGGTGAAAAA-TCAGTGTTTTGGAA
1 GAGTATCCTCTCAAAAATAATAGGGTTAGAGTATCCCCGATTGTGAAAAATTGA-TGTTTTAGAA
61033 ATAAAACCGGGGT
65 ATAAAACCGGGGT
61046 AACAGGGTTG
Statistics
Matches: 269, Mismatches: 39, Indels: 13
0.84 0.12 0.04
Matches are distributed among these distances:
78 22 0.08
79 178 0.66
80 69 0.26
ACGTcount: A:0.34, C:0.12, G:0.25, T:0.28
Consensus pattern (79 bp):
GAGTATCCTCTCAAAAATAATAGGGTTAGAGTATCCCCGATTGTGAAAAATTGATGTTTTAGAAA
TAAAACCGGGGTTA
Found at i:61063 original size:59 final size:59
Alignment explanation
Indices: 60990--61104 Score: 167
Period size: 59 Copynumber: 1.9 Consensus size: 59
60980 CAAAAATAAT
* *
60990 AGGGTTAGAGTATCCCCGATGGTGAAAAATCAGTGTTTTGGAAATAAAACCGGGGTAAC
1 AGGGTTAGAGTATCCCCGATGATGAAAAATCAGTGTTTTAGAAATAAAACCGGGGTAAC
* * * * *
61049 AGGGTTGGAGTATCCTCGATTATGAAAAATTAGTGTTTTAGAAATAAAATCGGGGT
1 AGGGTTAGAGTATCCCCGATGATGAAAAATCAGTGTTTTAGAAATAAAACCGGGGT
61105 TGGAGTATCC
Statistics
Matches: 49, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
59 49 1.00
ACGTcount: A:0.34, C:0.10, G:0.28, T:0.28
Consensus pattern (59 bp):
AGGGTTAGAGTATCCCCGATGATGAAAAATCAGTGTTTTAGAAATAAAACCGGGGTAAC
Found at i:61160 original size:138 final size:139
Alignment explanation
Indices: 60911--61176 Score: 392
Period size: 138 Copynumber: 1.9 Consensus size: 139
60901 AAAAATAATG
* *
60911 GGGTTGGAGTATCCCCGATTGTGAAAAATTGGTGTTTTAGAAATAAAAACCGGGGTTAGAGTATC
1 GGGTTGGAGTATCCCCGATTATGAAAAATTAGTGTTTTAGAAATAAAAACCGGGGTTAGAGTATC
* * * **
60976 CTCTCAAAAATAATAGGGTTAGAGTATCCCCGATGGTGAAAAATCAGTGTTTTGGAAATAAAACC
66 CCCTCAAAAATAATAGGGTTAGAGTATCCCCGATGGCGAAAAATCAGTATTTTAAAAATAAAACC
61041 GGGGTAACA
131 GGGGTAACA
* * *
61050 GGGTTGGAGTATCCTCGATTATGAAAAATTAGTGTTTTAGAAAT-AAAATCGGGGTTGGAGTATC
1 GGGTTGGAGTATCCCCGATTATGAAAAATTAGTGTTTTAGAAATAAAAACCGGGGTTAGAGTATC
* * *
61114 CCCTCGAAAATAAT-GGAGTTGGAGTATCCCTGATGGCGAAAAATCAGTATTTTAAAAATAAAA
66 CCCTCAAAAATAATAGG-GTTAGAGTATCCCCGATGGCGAAAAATCAGTATTTTAAAAATAAAA
61177 ACATGAATGA
Statistics
Matches: 113, Mismatches: 13, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
137 2 0.02
138 70 0.62
139 41 0.36
ACGTcount: A:0.35, C:0.12, G:0.25, T:0.28
Consensus pattern (139 bp):
GGGTTGGAGTATCCCCGATTATGAAAAATTAGTGTTTTAGAAATAAAAACCGGGGTTAGAGTATC
CCCTCAAAAATAATAGGGTTAGAGTATCCCCGATGGCGAAAAATCAGTATTTTAAAAATAAAACC
GGGGTAACA
Found at i:64000 original size:52 final size:52
Alignment explanation
Indices: 63839--64636 Score: 617
Period size: 52 Copynumber: 15.5 Consensus size: 52
63829 TACAATATTT
* * ** * *
63839 AAGTCCAATGTCGCTGGCCTTGAATCAGCATGTTGGCA--CCT-TCATCTTT
1 AAGTCTAATGTCGCTGGTCTTGAATCAGCACATTGGCATTCTTCTCATCTTC
** * * * * * *
63888 AAGTCCGATATCGCTGGCCTTGAATCAACATATTGGGA-TCTT-TAACAT-TCC
1 AAGTCTAATGTCGCTGGTCTTGAATCAGCACATTGGCATTCTTCT--CATCTTC
* * *
63939 TAAGCCTAATGTCACTGGTCTTGAATTAGCACATTGGCATTCTTCTCATCTTC
1 -AAGTCTAATGTCGCTGGTCTTGAATCAGCACATTGGCATTCTTCTCATCTTC
*
63992 AAGTCTAATATCGCTGGTCTTGAATCAGCACATTGGCATTCTTCTCATCTTC
1 AAGTCTAATGTCGCTGGTCTTGAATCAGCACATTGGCATTCTTCTCATCTTC
* * * * *
64044 AAGTCTAATGTCACTAGTCTTGAATCAGCACATTGGCATTTTTCTCACCTTT
1 AAGTCTAATGTCGCTGGTCTTGAATCAGCACATTGGCATTCTTCTCATCTTC
* * * * * * *
64096 AAGTCCAATATTGCTAGCCTTGAATCAGCACATCGGCA-CCTTCAT-AT-TT-
1 AAGTCTAATGTCGCTGGTCTTGAATCAGCACATTGGCATTCTTC-TCATCTTC
** * ** ** * * * ** *
64145 AAGTCCGATATCATTGACCTTGAATCATCATATTGGCATTTTTAACAT-TCC
1 AAGTCTAATGTCGCTGGTCTTGAATCAGCACATTGGCATTCTTCTCATCTTC
* * *
64196 TAAG-CTCAATGTCGCTGGCCTTGAATTAGCACATTGGCATTCTTCTCATTTTC
1 -AAGTCT-AATGTCGCTGGTCTTGAATCAGCACATTGGCATTCTTCTCATCTTC
*
64249 AAGTCTAATGTCGCTGGTCTTGAATTAGCACATTGGCATTCTTCTCATCTTC
1 AAGTCTAATGTCGCTGGTCTTGAATCAGCACATTGGCATTCTTCTCATCTTC
* * * * *
64301 AAGTCTAATGTCACTAGTCTTGAATCAGCACATTGGCATTTTTCTCACCTTT
1 AAGTCTAATGTCGCTGGTCTTGAATCAGCACATTGGCATTCTTCTCATCTTC
* * * * * *
64353 AAGTCCAATATTGCTGGCCTTGAATCAGCACATCGGCA-CCTTCAT-AT-TT-
1 AAGTCTAATGTCGCTGGTCTTGAATCAGCACATTGGCATTCTTC-TCATCTTC
* * * ** * * * ** *
64402 AAGT-TCGATATCGTTGACCTTGAATCATCATATTGGCATTTTTAACAT-TCC
1 AAGTCT-AATGTCGCTGGTCTTGAATCAGCACATTGGCATTCTTCTCATCTTC
* * *
64453 TAAG-CTCAATGTCGCTGGCCTTGAATTAGCACATTGGCATTCTTCTCATCTTT
1 -AAGTCT-AATGTCGCTGGTCTTGAATCAGCACATTGGCATTCTTCTCATCTTC
64506 AAGTCTAATGTCGCTGGTCTTGAATCAGCACATTGGCATTCTTCTCATCTTC
1 AAGTCTAATGTCGCTGGTCTTGAATCAGCACATTGGCATTCTTCTCATCTTC
* * * * * * * *
64558 AAGTCTAATGTCACTAGTCTTGAATCAGCACATTAGAATTTTTGTCACCTTT
1 AAGTCTAATGTCGCTGGTCTTGAATCAGCACATTGGCATTCTTCTCATCTTC
* * * *
64610 AAGTCCAATATCGCTAGCCTTGAATCA
1 AAGTCTAATGTCGCTGGTCTTGAATCA
64637 CTAGCCATGA
Statistics
Matches: 602, Mismatches: 123, Indels: 45
0.78 0.16 0.06
Matches are distributed among these distances:
49 91 0.15
50 17 0.03
51 10 0.02
52 470 0.78
53 13 0.02
54 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.16, T:0.36
Consensus pattern (52 bp):
AAGTCTAATGTCGCTGGTCTTGAATCAGCACATTGGCATTCTTCTCATCTTC
Found at i:64292 original size:257 final size:257
Alignment explanation
Indices: 63836--64636 Score: 1354
Period size: 257 Copynumber: 3.1 Consensus size: 257
63826 GTCTACAATA
* * ** * *
63836 TTTAAGTCCAATGTCGCTGGCCTTGAATCAGCATGTTGGCACCTTCATCTTTAAGTCCGATATCG
1 TTTAAGTCCAATATCGCTAGCCTTGAATCAGCACATCGGCACCTTCATATTTAAGTCCGATATCG
* * * * * * *
63901 CTGGCCTTGAATCAACATATTGGGATCTTTAACATTCCTAAGC-CTAATGTCACTGGTCTTGAAT
66 TTGACCTTGAATCATCATATTGGCATTTTTAACATTCCTAAGCTC-AATGTCGCTGGCCTTGAAT
* *
63965 TAGCACATTGGCATTCTTCTCATCTTCAAGTCTAATATCGCTGGTCTTGAATCAGCACATTGGCA
130 TAGCACATTGGCATTCTTCTCATTTTCAAGTCTAATGTCGCTGGTCTTGAATCAGCACATTGGCA
64030 TTCTTCTCATCTTCAAGTCTAATGTCACTAGTCTTGAATCAGCACATTGGCATTTTTCTCACC
195 TTCTTCTCATCTTCAAGTCTAATGTCACTAGTCTTGAATCAGCACATTGGCATTTTTCTCACC
* *
64093 TTTAAGTCCAATATTGCTAGCCTTGAATCAGCACATCGGCACCTTCATATTTAAGTCCGATATCA
1 TTTAAGTCCAATATCGCTAGCCTTGAATCAGCACATCGGCACCTTCATATTTAAGTCCGATATCG
64158 TTGACCTTGAATCATCATATTGGCATTTTTAACATTCCTAAGCTCAATGTCGCTGGCCTTGAATT
66 TTGACCTTGAATCATCATATTGGCATTTTTAACATTCCTAAGCTCAATGTCGCTGGCCTTGAATT
*
64223 AGCACATTGGCATTCTTCTCATTTTCAAGTCTAATGTCGCTGGTCTTGAATTAGCACATTGGCAT
131 AGCACATTGGCATTCTTCTCATTTTCAAGTCTAATGTCGCTGGTCTTGAATCAGCACATTGGCAT
64288 TCTTCTCATCTTCAAGTCTAATGTCACTAGTCTTGAATCAGCACATTGGCATTTTTCTCACC
196 TCTTCTCATCTTCAAGTCTAATGTCACTAGTCTTGAATCAGCACATTGGCATTTTTCTCACC
* * *
64350 TTTAAGTCCAATATTGCTGGCCTTGAATCAGCACATCGGCACCTTCATATTTAAGTTCGATATCG
1 TTTAAGTCCAATATCGCTAGCCTTGAATCAGCACATCGGCACCTTCATATTTAAGTCCGATATCG
64415 TTGACCTTGAATCATCATATTGGCATTTTTAACATTCCTAAGCTCAATGTCGCTGGCCTTGAATT
66 TTGACCTTGAATCATCATATTGGCATTTTTAACATTCCTAAGCTCAATGTCGCTGGCCTTGAATT
64480 AGCACATTGGCATTCTTCTCATCTTT-AAGTCTAATGTCGCTGGTCTTGAATCAGCACATTGGCA
131 AGCACATTGGCATTCTTCTCAT-TTTCAAGTCTAATGTCGCTGGTCTTGAATCAGCACATTGGCA
* * *
64544 TTCTTCTCATCTTCAAGTCTAATGTCACTAGTCTTGAATCAGCACATTAGAATTTTTGTCACC
195 TTCTTCTCATCTTCAAGTCTAATGTCACTAGTCTTGAATCAGCACATTGGCATTTTTCTCACC
64607 TTTAAGTCCAATATCGCTAGCCTTGAATCA
1 TTTAAGTCCAATATCGCTAGCCTTGAATCA
64637 CTAGCCATGA
Statistics
Matches: 515, Mismatches: 27, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
257 511 0.99
258 4 0.01
ACGTcount: A:0.25, C:0.24, G:0.15, T:0.36
Consensus pattern (257 bp):
TTTAAGTCCAATATCGCTAGCCTTGAATCAGCACATCGGCACCTTCATATTTAAGTCCGATATCG
TTGACCTTGAATCATCATATTGGCATTTTTAACATTCCTAAGCTCAATGTCGCTGGCCTTGAATT
AGCACATTGGCATTCTTCTCATTTTCAAGTCTAATGTCGCTGGTCTTGAATCAGCACATTGGCAT
TCTTCTCATCTTCAAGTCTAATGTCACTAGTCTTGAATCAGCACATTGGCATTTTTCTCACC
Found at i:64425 original size:205 final size:206
Alignment explanation
Indices: 63839--64590 Score: 652
Period size: 205 Copynumber: 3.7 Consensus size: 206
63829 TACAATATTT
* * * ** * ** *
63839 AAGTCCAATGTCGCTGGCCTTGAATCAGCATGTTGGCA--CCT-TCATCTTTAAGTCCGATATCG
1 AAGTCTAATGTCGCTGGTCTTGAATTAGCACATTGGCATTCTTCTCATCTTTAAGTCTAATGTCG
* * * * * * * *
63901 CTGGCCTTGAATCAACATATTGGGA-TCTT-TAACATTCCTAAG-CCTAATGTCACTGGTCTTGA
66 CTAGTCTTGAATCAGCACATTGGCATTCTTCTCAC-TT--TAAGTCC-AATATCACTGGCCTTGA
* * * ** **
63963 ATTAGCACATTGGCATTCTTCTCA-TCTTCAAG-TCTAATATCGCTGGTCTTGAATCAGCACATT
127 ATCAGCACATCGGCATCCTTAACATTC-T-AAGCTC-AATATCGCTGACCTTGAATCAGCACATT
*
64026 GGCATTCTTCTCATCTTC
189 GGCATTCTTCTCATTTTC
* * * * * * * *
64044 AAGTCTAATGTCACTAGTCTTGAATCAGCACATTGGCATTTTTCTCACCTTTAAGTCCAATATTG
1 AAGTCTAATGTCGCTGGTCTTGAATTAGCACATTGGCATTCTTCTCATCTTTAAGTCTAATGTCG
* * * * * *
64109 CTAGCCTTGAATCAGCACATCGGCA-CCTTCAT-A-TTTAAGTCCGATATCATTGACCTTGAATC
66 CTAGTCTTGAATCAGCACATTGGCATTCTTC-TCACTTTAAGTCCAATATCACTGGCCTTGAATC
* * * ** * * *
64171 ATCATATTGGCATTTTTAACATTCCTAAGCTCAATGTCGCTGGCCTTGAATTAGCACATTGGCAT
130 AGCACATCGGCATCCTTAACATT-CTAAGCTCAATATCGCTGACCTTGAATCAGCACATTGGCAT
64236 TCTTCTCATTTTC
194 TCTTCTCATTTTC
* *
64249 AAGTCTAATGTCGCTGGTCTTGAATTAGCACATTGGCATTCTTCTCATCTTCAAGTCTAATGTCA
1 AAGTCTAATGTCGCTGGTCTTGAATTAGCACATTGGCATTCTTCTCATCTTTAAGTCTAATGTCG
* **
64314 CTAGTCTTGAATCAGCACATTGGCATTTTTCTCACCTTTAAGTCCAATATTGCTGGCCTTGAATC
66 CTAGTCTTGAATCAGCACATTGGCATTCTTCTCA-CTTTAAGTCCAATATCACTGGCCTTGAATC
* * * * * * *
64379 AGCACATCGGCA-CCTTCATATT-TAAGTTCGATATCGTTGACCTTGAATCATCATATTGGCATT
130 AGCACATCGGCATCCTTAACATTCTAAGCTCAATATCGCTGACCTTGAATCAGCACATTGGCATT
* ** *
64442 TTTAACA-TTCC
195 CTTCTCATTTTC
*
64453 TAAG-CTCAATGTCGCTGGCCTTGAATTAGCACATTGGCATTCTTCTCATCTTTAAGTCTAATGT
1 -AAGTCT-AATGTCGCTGGTCTTGAATTAGCACATTGGCATTCTTCTCATCTTTAAGTCTAATGT
* * * * * *
64517 CGCTGGTCTTGAATCAGCACATTGGCATTCTTCTCATCTTCAAGTCTAATGTCACTAGTCTTGAA
64 CGCTAGTCTTGAATCAGCACATTGGCATTCTTCTCA-CTTTAAGTCCAATATCACTGGCCTTGAA
64582 TCAGCACAT
128 TCAGCACAT
64591 TAGAATTTTT
Statistics
Matches: 449, Mismatches: 83, Indels: 30
0.80 0.15 0.05
Matches are distributed among these distances:
204 5 0.01
205 348 0.78
206 10 0.02
207 10 0.02
208 74 0.16
209 1 0.00
210 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.16, T:0.36
Consensus pattern (206 bp):
AAGTCTAATGTCGCTGGTCTTGAATTAGCACATTGGCATTCTTCTCATCTTTAAGTCTAATGTCG
CTAGTCTTGAATCAGCACATTGGCATTCTTCTCACTTTAAGTCCAATATCACTGGCCTTGAATCA
GCACATCGGCATCCTTAACATTCTAAGCTCAATATCGCTGACCTTGAATCAGCACATTGGCATTC
TTCTCATTTTC
Found at i:65639 original size:20 final size:19
Alignment explanation
Indices: 65610--65647 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
65600 TTTTATCAAT
*
65610 ACAATGTATCGATACATGG
1 ACAATGTATCAATACATGG
65629 ACAATTGTATCAATACATG
1 ACAA-TGTATCAATACATG
65648 AAACTGGCAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.39, C:0.16, G:0.16, T:0.29
Consensus pattern (19 bp):
ACAATGTATCAATACATGG
Found at i:65701 original size:20 final size:19
Alignment explanation
Indices: 65676--65729 Score: 74
Period size: 20 Copynumber: 2.7 Consensus size: 19
65666 CTACCACTGT
65676 TTGTATCGATACATG-GCACA
1 TTGTATCGATACATGAG-A-A
65696 TTGTATCGATACATGATGAA
1 TTGTATCGATACATGA-GAA
65716 TTGTATCGATACAT
1 TTGTATCGATACAT
65730 TGCTTCAAAC
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
20 30 0.94
21 1 0.03
22 1 0.03
ACGTcount: A:0.31, C:0.15, G:0.19, T:0.35
Consensus pattern (19 bp):
TTGTATCGATACATGAGAA
Found at i:69596 original size:19 final size:21
Alignment explanation
Indices: 69553--69604 Score: 72
Period size: 19 Copynumber: 2.6 Consensus size: 21
69543 TTCAATAATT
69553 TGTATCGATACAAATAGTAAA
1 TGTATCGATACAAATAGTAAA
*
69574 TGTATCGATACATA-AGT-AA
1 TGTATCGATACAAATAGTAAA
*
69593 TGTATTGATACA
1 TGTATCGATACA
69605 GTGTATCGCT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
19 13 0.45
20 3 0.10
21 13 0.45
ACGTcount: A:0.42, C:0.10, G:0.15, T:0.33
Consensus pattern (21 bp):
TGTATCGATACAAATAGTAAA
Found at i:69673 original size:13 final size:13
Alignment explanation
Indices: 69655--69681 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
69645 ACATTTGTAG
69655 AATGTATCGATAC
1 AATGTATCGATAC
69668 AATGTATCGATAC
1 AATGTATCGATAC
69681 A
1 A
69682 TCGATCTTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
AATGTATCGATAC
Found at i:72089 original size:51 final size:51
Alignment explanation
Indices: 72032--72247 Score: 192
Period size: 51 Copynumber: 4.2 Consensus size: 51
72022 ATTTTTCATC
* *
72032 TCGGGGATACTCCAA-TCCCGGTTTCATTTTCAAAACATCAATTTTTCTTAA
1 TCGGGGATACTCCAACT-CCGATTTCATTTTCAAAACATCAATTTTTCTCAA
* * * * *
72083 TCGGGGATACTCCAACTCCGATTTTA-TTTCTAAAGCCTCGA-TTTACTGCAA
1 TCGGGGATACTCCAACTCCGATTTCATTTTC-AAAACATCAATTTTTCT-CAA
* * *
72134 -CGGGGGATACTCCAA-TCCCTG-TTTCATCTCCAAAACATCAATTTTTCTTAA
1 TC-GGGGATACTCCAACT-CC-GATTTCATTTTCAAAACATCAATTTTTCTCAA
* * * * *
72185 TCGGGGATACTCCAACTCCGATTTTATTTTTAAAATACCAATTTTTCACAA
1 TCGGGGATACTCCAACTCCGATTTCATTTTCAAAACATCAATTTTTCTCAA
*
72236 TTGGGGATACTC
1 TCGGGGATACTC
72248 GTACCCCGTC
Statistics
Matches: 130, Mismatches: 24, Indels: 22
0.74 0.14 0.12
Matches are distributed among these distances:
50 12 0.09
51 107 0.82
52 11 0.08
ACGTcount: A:0.27, C:0.24, G:0.13, T:0.35
Consensus pattern (51 bp):
TCGGGGATACTCCAACTCCGATTTCATTTTCAAAACATCAATTTTTCTCAA
Found at i:72210 original size:102 final size:102
Alignment explanation
Indices: 72034--72218 Score: 334
Period size: 102 Copynumber: 1.8 Consensus size: 102
72024 TTTTCATCTC
* *
72034 GGGGATACTCCAATCCCGGTTTCATTTTCAAAACATCAATTTTTCTTAATCGGGGATACTCCAAC
1 GGGGATACTCCAATCCCGGTTTCATCTCCAAAACATCAATTTTTCTTAATCGGGGATACTCCAAC
72099 TCCGATTTTATTTCTAAAGCCTCGATTTACTGCAACG
66 TCCGATTTTATTTCTAAAGCCTCGATTTACTGCAACG
*
72136 GGGGATACTCCAATCCCTGTTTCATCTCCAAAACATCAATTTTTCTTAATCGGGGATACTCCAAC
1 GGGGATACTCCAATCCCGGTTTCATCTCCAAAACATCAATTTTTCTTAATCGGGGATACTCCAAC
*
72201 TCCGATTTTATTTTTAAA
66 TCCGATTTTATTTCTAAA
72219 ATACCAATTT
Statistics
Matches: 79, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
102 79 1.00
ACGTcount: A:0.27, C:0.24, G:0.14, T:0.35
Consensus pattern (102 bp):
GGGGATACTCCAATCCCGGTTTCATCTCCAAAACATCAATTTTTCTTAATCGGGGATACTCCAAC
TCCGATTTTATTTCTAAAGCCTCGATTTACTGCAACG
Found at i:72317 original size:107 final size:107
Alignment explanation
Indices: 72187--72390 Score: 266
Period size: 107 Copynumber: 1.9 Consensus size: 107
72177 TTTCTTAATC
* * * * **
72187 GGGGATACTCCAACTCCGATTTTATTTTTAAAATACCAATTTTTCACAATTGGGGATACTCGTAC
1 GGGGATACTCCAACTCCGATTTTATTTCTAAAACACCAATTTTTCACAATCGAGGATACTCCAAC
* *
72252 CCCGTCA-ATTCATTGGGGATACTCCAACCCCGTTATTTCCGA
66 CCCGTCATATTCA-AGAGGATACTCCAACCCCGTTATTTCCGA
* * * *
72294 GGGGATACTCCAACTTCGGTTTTATTTCTAAAACATCAATTTTTCATAATCGAGGATACTCCAAC
1 GGGGATACTCCAACTCCGATTTTATTTCTAAAACACCAATTTTTCACAATCGAGGATACTCCAAC
* *
72359 CCCGTTATTTTCAAGAGGATACTCCAACCCCG
66 CCCGTCATATTCAAGAGGATACTCCAACCCCG
72391 GTTTTATTTT
Statistics
Matches: 82, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
107 78 0.95
108 4 0.05
ACGTcount: A:0.27, C:0.25, G:0.15, T:0.32
Consensus pattern (107 bp):
GGGGATACTCCAACTCCGATTTTATTTCTAAAACACCAATTTTTCACAATCGAGGATACTCCAAC
CCCGTCATATTCAAGAGGATACTCCAACCCCGTTATTTCCGA
Found at i:72351 original size:79 final size:79
Alignment explanation
Indices: 72268--72413 Score: 229
Period size: 79 Copynumber: 1.8 Consensus size: 79
72258 AATTCATTGG
* * ** *
72268 GGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACTTCGGTTTTATTTCTAAAACATCAA
1 GGATACTCCAACCCCGTTATTTCCAAGAGGATACTCCAACCCCGGTTTTATTTCTAAAACACCAA
72333 TTTTTCATAATCGA
66 TTTTTCATAATCGA
* *
72347 GGATACTCCAACCCCGTTATTTTCAAGAGGATACTCCAACCCCGGTTTTATTTTTAAAACACCAA
1 GGATACTCCAACCCCGTTATTTCCAAGAGGATACTCCAACCCCGGTTTTATTTCTAAAACACCAA
72412 TT
66 TT
72414 CTCCACAACC
Statistics
Matches: 60, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
79 60 1.00
ACGTcount: A:0.29, C:0.25, G:0.13, T:0.33
Consensus pattern (79 bp):
GGATACTCCAACCCCGTTATTTCCAAGAGGATACTCCAACCCCGGTTTTATTTCTAAAACACCAA
TTTTTCATAATCGA
Found at i:72434 original size:79 final size:79
Alignment explanation
Indices: 72266--72437 Score: 227
Period size: 79 Copynumber: 2.2 Consensus size: 79
72256 TCAATTCATT
* * ** *
72266 GGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACTTCGGTTTTATTTCTAAAACATC
1 GGGGATACTCCAACCCCGTTATTTCCAAGAGGATACTCCAACCCCGGTTTTATTTCTAAAACACC
* * * *
72331 AATTTTTCATAATC
66 AATTCTCCACAACC
* * *
72345 GAGGATACTCCAACCCCGTTATTTTCAAGAGGATACTCCAACCCCGGTTTTATTTTTAAAACACC
1 GGGGATACTCCAACCCCGTTATTTCCAAGAGGATACTCCAACCCCGGTTTTATTTCTAAAACACC
72410 AATTCTCCACAACC
66 AATTCTCCACAACC
*
72424 GGGGACACTCCAAC
1 GGGGATACTCCAAC
72438 TCCGATTTTA
Statistics
Matches: 79, Mismatches: 14, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
79 79 1.00
ACGTcount: A:0.28, C:0.28, G:0.15, T:0.29
Consensus pattern (79 bp):
GGGGATACTCCAACCCCGTTATTTCCAAGAGGATACTCCAACCCCGGTTTTATTTCTAAAACACC
AATTCTCCACAACC
Found at i:72457 original size:51 final size:51
Alignment explanation
Indices: 72379--72492 Score: 147
Period size: 51 Copynumber: 2.2 Consensus size: 51
72369 TCAAGAGGAT
* * *
72379 ACTCCAACCCCGGTTTTATTTTTAAAACACCAATTCTCCACAACCGGGGAC
1 ACTCCAACCCCGATTTTATTTTCAAAACACCAATTCTCCACAACCAGGGAC
* * * * * *
72430 ACTCCAACTCCGATTTTATTTTCAAAACACTAATTTTTCACAATCAGGGAT
1 ACTCCAACCCCGATTTTATTTTCAAAACACCAATTCTCCACAACCAGGGAC
72481 ACTCCAACCCCG
1 ACTCCAACCCCG
72493 TTATTTCATC
Statistics
Matches: 53, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
51 53 1.00
ACGTcount: A:0.31, C:0.32, G:0.10, T:0.28
Consensus pattern (51 bp):
ACTCCAACCCCGATTTTATTTTCAAAACACCAATTCTCCACAACCAGGGAC
Found at i:72508 original size:28 final size:27
Alignment explanation
Indices: 72476--72548 Score: 112
Period size: 28 Copynumber: 2.6 Consensus size: 27
72466 TTCACAATCA
72476 GGGATACTCCAACCCCGTTA-TTTCATCG
1 GGGATACTCCAACCCCGTTATTTTCA--G
72504 GGGATACTCCAACCCCGTTATTTTCGAG
1 GGGATACTCCAACCCCGTTATTTTC-AG
72532 GGGATACTCCAACCCCG
1 GGGATACTCCAACCCCG
72549 ATGTCATTTT
Statistics
Matches: 43, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
28 38 0.88
29 4 0.09
30 1 0.02
ACGTcount: A:0.22, C:0.33, G:0.21, T:0.25
Consensus pattern (27 bp):
GGGATACTCCAACCCCGTTATTTTCAG
Found at i:72592 original size:49 final size:51
Alignment explanation
Indices: 72532--72666 Score: 150
Period size: 51 Copynumber: 2.7 Consensus size: 51
72522 TATTTTCGAG
* *
72532 GGGATACTCCAACCCCGATGTCATTTTCAAAATATCGA-TTT-TATAATCA
1 GGGATACTCCAACCCCGATGTTATTTTCAAAATATCAATTTTCTATAATCA
* ** * *
72581 GGGATACTCCAACCCCGATTTTA-TTTCTGGAACACCAATTTTCTATAATCA
1 GGGATACTCCAACCCCGATGTTATTTTC-AAAATATCAATTTTCTATAATCA
* * *
72632 GGGATACTCCAGCCCCGTTGTTATCTTCAAAATAT
1 GGGATACTCCAACCCCGATGTTATTTTCAAAATAT
72667 TAAATTTTTT
Statistics
Matches: 67, Mismatches: 15, Indels: 6
0.76 0.17 0.07
Matches are distributed among these distances:
48 4 0.06
49 26 0.39
50 3 0.04
51 31 0.46
52 3 0.04
ACGTcount: A:0.30, C:0.24, G:0.13, T:0.33
Consensus pattern (51 bp):
GGGATACTCCAACCCCGATGTTATTTTCAAAATATCAATTTTCTATAATCA
Found at i:72640 original size:156 final size:158
Alignment explanation
Indices: 72342--72650 Score: 383
Period size: 158 Copynumber: 2.0 Consensus size: 158
72332 ATTTTTCATA
* * * *
72342 ATCGAGGATACTCCAACCCCGTTATTTTCAAGAGGATACTCCAACCCCGGTTTTATTTTTAAAAC
1 ATCGAGGATACTCCAACCCCGTTATTTTCAAGAGGATACTCCAACCCCGATGTCATTTTCAAAAC
* * *
72407 ACCAATTCTCCACAACCGGGGACACTCCAACTCCGATTTTATTTTCAAAACACTAATTTTTCACA
66 ACCAATTCTCCACAACCAGGGACACTCCAACCCCGATTTTATTTTCAAAACACCAATTTTTCACA
72472 ATCAGGGATACTCCAACCCCGTTATTTC
131 ATCAGGGATACTCCAACCCCGTTATTTC
* * * *
72500 ATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGATGTCATTTTCAAAAT
1 ATCGAGGATACTCCAACCCCGTTATTTTCAAGAGGATACTCCAACCCCGATGTCATTTTCAAAAC
* * * * * * **
72565 ATCGATT-T-TATAATCAGGGATACTCCAACCCCGATTTTA-TTTCTGGAACACCAA-TTTTCTA
66 ACCAATTCTCCACAACCAGGGACACTCCAACCCCGATTTTATTTTC-AAAACACCAATTTTTC-A
* *
72626 TAATCAGGGATACTCCAGCCCCGTT
129 CAATCAGGGATACTCCAACCCCGTT
72651 GTTATCTTCA
Statistics
Matches: 128, Mismatches: 21, Indels: 6
0.83 0.14 0.04
Matches are distributed among these distances:
155 9 0.07
156 56 0.44
157 1 0.01
158 62 0.48
ACGTcount: A:0.28, C:0.28, G:0.14, T:0.30
Consensus pattern (158 bp):
ATCGAGGATACTCCAACCCCGTTATTTTCAAGAGGATACTCCAACCCCGATGTCATTTTCAAAAC
ACCAATTCTCCACAACCAGGGACACTCCAACCCCGATTTTATTTTCAAAACACCAATTTTTCACA
ATCAGGGATACTCCAACCCCGTTATTTC
Found at i:77609 original size:21 final size:22
Alignment explanation
Indices: 77568--77608 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 22
77558 TTATAACCGA
*
77568 TTATCAAGGGGGAGAAATTTTG
1 TTATCAAGAGGGAGAAATTTTG
77590 TTATCAA-AGGGA-AAATTTT
1 TTATCAAGAGGGAGAAATTTT
77609 TTAACGAGAG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 7 0.39
21 4 0.22
22 7 0.39
ACGTcount: A:0.37, C:0.05, G:0.24, T:0.34
Consensus pattern (22 bp):
TTATCAAGAGGGAGAAATTTTG
Found at i:78188 original size:19 final size:19
Alignment explanation
Indices: 78145--78217 Score: 85
Period size: 20 Copynumber: 3.7 Consensus size: 19
78135 CACACCCAGA
*
78145 TGTATCGATACAT-TATGCTT
1 TGTATCGATACATGT-T-CAT
78165 TGTATCGATACATGTTCAT
1 TGTATCGATACATGTTCAT
**
78184 TGTATCGATACATGGACAAT
1 TGTATCGATACATGTTC-AT
78204 TGTATCGATACATG
1 TGTATCGATACATG
78218 AAACTGGCAG
Statistics
Matches: 48, Mismatches: 3, Indels: 4
0.87 0.05 0.07
Matches are distributed among these distances:
19 17 0.35
20 30 0.62
21 1 0.02
ACGTcount: A:0.29, C:0.15, G:0.18, T:0.38
Consensus pattern (19 bp):
TGTATCGATACATGTTCAT
Found at i:78271 original size:20 final size:19
Alignment explanation
Indices: 78246--78299 Score: 74
Period size: 20 Copynumber: 2.7 Consensus size: 19
78236 CTACCACTGT
78246 TTGTATCGATACATG-GCACA
1 TTGTATCGATACATGAG-A-A
78266 TTGTATCGATACATGATGAA
1 TTGTATCGATACATGA-GAA
78286 TTGTATCGATACAT
1 TTGTATCGATACAT
78300 TGCTTCAAAC
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
20 30 0.94
21 1 0.03
22 1 0.03
ACGTcount: A:0.31, C:0.15, G:0.19, T:0.35
Consensus pattern (19 bp):
TTGTATCGATACATGAGAA
Found at i:80284 original size:32 final size:32
Alignment explanation
Indices: 80248--80320 Score: 119
Period size: 32 Copynumber: 2.3 Consensus size: 32
80238 ACATTCAGTA
*
80248 AATGTATCAATACATAAGTGTTGTATCTATAC
1 AATGTATCAATACATAAGTGTTGTATCGATAC
* *
80280 AATGTATCGATACATAAGTTTTGTATCGATAC
1 AATGTATCAATACATAAGTGTTGTATCGATAC
80312 AATGTATCA
1 AATGTATCA
80321 CTAGGAAGCT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 37 1.00
ACGTcount: A:0.37, C:0.12, G:0.14, T:0.37
Consensus pattern (32 bp):
AATGTATCAATACATAAGTGTTGTATCGATAC
Found at i:82783 original size:51 final size:50
Alignment explanation
Indices: 82728--82911 Score: 244
Period size: 51 Copynumber: 3.6 Consensus size: 50
82718 TAAGTTTCTC
*
82728 AATTTTGCACAATCGGGGATACTCCAACCCTGGTTTTATTTCTAAAACACT
1 AATTTTTCACAATCGGGGATACTCCAACCC-GGTTTTATTTCTAAAACACT
* *
82779 AATTTTTCACAATCGGAGATACTCCAACCCCGGTTTTATTT-TCAAACACT
1 AATTTTTCACAATCGGGGATACTCCAA-CCCGGTTTTATTTCTAAAACACT
* ** * *
82829 AATTTTCCTTTAATCGGGGATGCTCCAACTCCGATTTTATTTCTAAAAACACT
1 AATTTTTC-ACAATCGGGGATACTCCAAC-CCGGTTTTATTTCT-AAAACACT
82882 AATTTTTCACAATCGGGGATACTCCAACCC
1 AATTTTTCACAATCGGGGATACTCCAACCC
82912 CGTTAATCAT
Statistics
Matches: 114, Mismatches: 14, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
50 16 0.14
51 63 0.55
52 21 0.18
53 14 0.12
ACGTcount: A:0.29, C:0.25, G:0.12, T:0.34
Consensus pattern (50 bp):
AATTTTTCACAATCGGGGATACTCCAACCCGGTTTTATTTCTAAAACACT
Found at i:83010 original size:75 final size:73
Alignment explanation
Indices: 82920--83163 Score: 251
Period size: 79 Copynumber: 3.3 Consensus size: 73
82910 CCCGTTAATC
*
82920 ATCGAGGATACTCCAACCCCGTTATTTCTGAGGGGACACTCAAACCCCGATTTTATTTCTAAAAC
1 ATCGAGGATACTCCAACCCCGTTATTTC-GA-GGGATACTCAAACCCCGATTTTATTTCTAAAAC
*
82985 ATCAGTTTTA
64 ATCATTTTTA
* * * * *
82995 ATCGGGGATACTCCAACCCCGTTATTTC---CGATACTCCAACCCCGGTTTTATTTCTAAAATAT
1 ATCGAGGATACTCCAACCCCGTTATTTCGAGGGATACTCAAACCCCGATTTTATTTCTAAAACA-
*
83057 TAATTTCTCATA
65 TCATTT-T--TA
* * ** *
83069 ATCGGGGATACTCCAACCCCGTTACTTCCGAGAGGATACTCTGATCCCGATTTTATTTCTAAAAC
1 ATCGAGGATACTCCAACCCCGTTA-TTTCGAG-GGATACTCAAACCCCGATTTTATTTCTAAAAC
*
83134 ATCAATTTTTC
64 ATC-ATTTTTA
*
83145 ATCAAGGATACTCCAACCC
1 ATCGAGGATACTCCAACCC
83164 TGGCTTTATT
Statistics
Matches: 140, Mismatches: 19, Indels: 19
0.79 0.11 0.11
Matches are distributed among these distances:
70 28 0.20
71 4 0.03
72 1 0.01
74 26 0.19
75 30 0.21
76 18 0.13
78 2 0.01
79 31 0.22
ACGTcount: A:0.28, C:0.27, G:0.13, T:0.32
Consensus pattern (73 bp):
ATCGAGGATACTCCAACCCCGTTATTTCGAGGGATACTCAAACCCCGATTTTATTTCTAAAACAT
CATTTTTA
Found at i:83213 original size:51 final size:51
Alignment explanation
Indices: 83150--83266 Score: 180
Period size: 51 Copynumber: 2.3 Consensus size: 51
83140 TTTTCATCAA
* * *
83150 GGATACTCCAACCCTGGCTTTATTTCCAAAATATTGATTTCTCACAATCGG
1 GGATACTCCAACCCCGGCCTTATTTCCAAAATATCGATTTCTCACAATCGG
* * *
83201 GGATACTTCAACCCCGGCCTTATTTCTAAAATATCGATTTCTCATAATCGG
1 GGATACTCCAACCCCGGCCTTATTTCCAAAATATCGATTTCTCACAATCGG
83252 GGATACTCCAACCCC
1 GGATACTCCAACCCC
83267 ATTATTTTCA
Statistics
Matches: 59, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
51 59 1.00
ACGTcount: A:0.27, C:0.28, G:0.14, T:0.31
Consensus pattern (51 bp):
GGATACTCCAACCCCGGCCTTATTTCCAAAATATCGATTTCTCACAATCGG
Found at i:89378 original size:20 final size:20
Alignment explanation
Indices: 89353--89393 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
89343 CAAATAGTAA
* *
89353 ATGTATTGATATATTTACTT
1 ATGTATCGATACATTTACTT
*
89373 ATGTATCGATACATTTCCTT
1 ATGTATCGATACATTTACTT
89393 A
1 A
89394 GCAATATGTA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.29, C:0.12, G:0.10, T:0.49
Consensus pattern (20 bp):
ATGTATCGATACATTTACTT
Found at i:92557 original size:163 final size:163
Alignment explanation
Indices: 92274--92638 Score: 597
Period size: 163 Copynumber: 2.2 Consensus size: 163
92264 CAGAAGTATT
* **
92274 AATTCAATTTAATTTTATTTATTTTCAAAAATACCATTTTGTACCCTAATAGAAGCCCAAAAGAA
1 AATTTAATTTAATTTTATTTATTTTCAAAAATACCATTTCCTACCCTAATAGAAGCCCAAAAGAA
* * * *
92339 TACGAAAGGTTTTTGAAATCTTTTATACCCCTATGGGTGCCCATAGGAATATAAAATAT-TAGAA
66 TACGAAAGGTTTTTGAAATCTTTTATACCCCTATGGATGCCCATAGGAATATAAAAGATCAAAAA
92403 AAAATAAATATTAGAATTTATCCCAATAATACC
131 AAAATAAATATTAGAATTTATCCCAATAATACC
* * *
92436 AATTTAATTTAATTTTATTTATTTTCAAAAAATACCATTTCCTACTCTAATGGAAGCCCGAAAGA
1 AATTTAATTTAATTTTATTTATTTTC-AAAAATACCATTTCCTACCCTAATAGAAGCCCAAAAGA
* *
92501 ATACGAAAGGTTTTTGAAATCTTTTATACCCCTATGGATGCCTATAGGATTATAAAAGATCAAAA
65 ATACGAAAGGTTTTTGAAATCTTTTATACCCCTATGGATGCCCATAGGAATATAAAAGATCAAAA
92566 AAAAATAAATATTAGAATTTATCCCAATAATACC
130 AAAAATAAATATTAGAATTTATCCCAATAATACC
*
92600 AATTTAATTTAATTTTATTTATTTTCGAAAATACCATTT
1 AATTTAATTTAATTTTATTTATTTTCAAAAATACCATTT
92639 TGTTAGGACC
Statistics
Matches: 188, Mismatches: 13, Indels: 3
0.92 0.06 0.01
Matches are distributed among these distances:
162 25 0.13
163 101 0.54
164 62 0.33
ACGTcount: A:0.41, C:0.14, G:0.09, T:0.36
Consensus pattern (163 bp):
AATTTAATTTAATTTTATTTATTTTCAAAAATACCATTTCCTACCCTAATAGAAGCCCAAAAGAA
TACGAAAGGTTTTTGAAATCTTTTATACCCCTATGGATGCCCATAGGAATATAAAAGATCAAAAA
AAAATAAATATTAGAATTTATCCCAATAATACC
Found at i:93058 original size:20 final size:20
Alignment explanation
Indices: 93035--93074 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
93025 ATATTGTATC
* *
93035 GATACATTGTATTGATACAT
1 GATAAATTGTATCGATACAT
93055 GATAAATTGTATCGATACAT
1 GATAAATTGTATCGATACAT
93075 TGCTTGTAAC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.38, C:0.10, G:0.15, T:0.38
Consensus pattern (20 bp):
GATAAATTGTATCGATACAT
Found at i:97897 original size:52 final size:52
Alignment explanation
Indices: 97815--97941 Score: 227
Period size: 52 Copynumber: 2.4 Consensus size: 52
97805 AATATGAACT
* *
97815 TTTGCCTGCATGTATCGATACATTTTATAGTGTATCGATACATCTGGGCAAA
1 TTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGAAAA
97867 TTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGAAAA
1 TTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGAAAA
*
97919 TTTGCCTGTATGTATCGATACAT
1 TTTGCCTGCATGTATCGATACAT
97942 CTGGGCAAAT
Statistics
Matches: 72, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 72 1.00
ACGTcount: A:0.27, C:0.17, G:0.19, T:0.37
Consensus pattern (52 bp):
TTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGAAAA
Found at i:97934 original size:32 final size:32
Alignment explanation
Indices: 97897--97972 Score: 134
Period size: 32 Copynumber: 2.4 Consensus size: 32
97887 CATTTCATAG
*
97897 TGTATCGATACATCTGGGAAAATTTGCCTGTA
1 TGTATCGATACATCTGGGAAAATTTGCCTGCA
*
97929 TGTATCGATACATCTGGGCAAATTTGCCTGCA
1 TGTATCGATACATCTGGGAAAATTTGCCTGCA
97961 TGTATCGATACA
1 TGTATCGATACA
97973 AAGATCAGTG
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
32 42 1.00
ACGTcount: A:0.28, C:0.18, G:0.21, T:0.33
Consensus pattern (32 bp):
TGTATCGATACATCTGGGAAAATTTGCCTGCA
Found at i:97999 original size:13 final size:13
Alignment explanation
Indices: 97981--98005 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
97971 CAAAGATCAG
97981 TGTATCGATACAA
1 TGTATCGATACAA
97994 TGTATCGATACA
1 TGTATCGATACA
98006 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:98071 original size:19 final size:19
Alignment explanation
Indices: 98047--98112 Score: 90
Period size: 19 Copynumber: 3.8 Consensus size: 19
98037 AGTAGCTTCA
98047 TATGTATCGATACAACACT
1 TATGTATCGATACAACACT
98066 TATGTATCGAT---ACA--
1 TATGTATCGATACAACACT
98080 T-TGTATCGATACAACACT
1 TATGTATCGATACAACACT
98098 TATGTATCGATACAA
1 TATGTATCGATACAA
98113 ATCGTTGACA
Statistics
Matches: 41, Mismatches: 0, Indels: 12
0.77 0.00 0.23
Matches are distributed among these distances:
13 9 0.22
14 1 0.02
16 6 0.15
18 1 0.02
19 24 0.59
ACGTcount: A:0.36, C:0.18, G:0.12, T:0.33
Consensus pattern (19 bp):
TATGTATCGATACAACACT
Found at i:98086 original size:13 final size:13
Alignment explanation
Indices: 98068--98092 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
98058 ACAACACTTA
98068 TGTATCGATACAT
1 TGTATCGATACAT
98081 TGTATCGATACA
1 TGTATCGATACA
98093 ACACTTATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:98090 original size:32 final size:32
Alignment explanation
Indices: 98049--98111 Score: 126
Period size: 32 Copynumber: 2.0 Consensus size: 32
98039 TAGCTTCATA
98049 TGTATCGATACAACACTTATGTATCGATACAT
1 TGTATCGATACAACACTTATGTATCGATACAT
98081 TGTATCGATACAACACTTATGTATCGATACA
1 TGTATCGATACAACACTTATGTATCGATACA
98112 AATCGTTGAC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.35, C:0.19, G:0.13, T:0.33
Consensus pattern (32 bp):
TGTATCGATACAACACTTATGTATCGATACAT
Found at i:100857 original size:75 final size:75
Alignment explanation
Indices: 100734--100885 Score: 304
Period size: 75 Copynumber: 2.0 Consensus size: 75
100724 ACACAAGGAG
100734 CAAAATGAAAGTGTCCAAAATGAAAAAGCTCCAAAAGAAGTTGATGAACAAGAGCCAACTCAAAC
1 CAAAATGAAAGTGTCCAAAATGAAAAAGCTCCAAAAGAAGTTGATGAACAAGAGCCAACTCAAAC
100799 CGAAAAGAAA
66 CGAAAAGAAA
100809 CAAAATGAAAGTGTCCAAAATGAAAAAGCTCCAAAAGAAGTTGATGAACAAGAGCCAACTCAAAC
1 CAAAATGAAAGTGTCCAAAATGAAAAAGCTCCAAAAGAAGTTGATGAACAAGAGCCAACTCAAAC
100874 CGAAAAGAAA
66 CGAAAAGAAA
100884 CA
1 CA
100886 TCCGAGAGAG
Statistics
Matches: 77, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
75 77 1.00
ACGTcount: A:0.53, C:0.18, G:0.17, T:0.12
Consensus pattern (75 bp):
CAAAATGAAAGTGTCCAAAATGAAAAAGCTCCAAAAGAAGTTGATGAACAAGAGCCAACTCAAAC
CGAAAAGAAA
Found at i:108015 original size:13 final size:13
Alignment explanation
Indices: 107997--108023 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
107987 ACATTATGCT
107997 TTGTATCGATACA
1 TTGTATCGATACA
108010 TTGTATCGATACA
1 TTGTATCGATACA
108023 T
1 T
108024 GTTCATTGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:108032 original size:19 final size:19
Alignment explanation
Indices: 108008--108064 Score: 87
Period size: 19 Copynumber: 2.9 Consensus size: 19
107998 TGTATCGATA
*
108008 CATTGTATCGATACATGTT
1 CATTGTATCGATACATGAT
108027 CATTGTATCGATACATGGAT
1 CATTGTATCGATACAT-GAT
*
108047 AATTGTATCGATACATGA
1 CATTGTATCGATACATGA
108065 AACTGTCAGT
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
19 18 0.51
20 17 0.49
ACGTcount: A:0.32, C:0.14, G:0.18, T:0.37
Consensus pattern (19 bp):
CATTGTATCGATACATGAT
Found at i:108053 original size:20 final size:20
Alignment explanation
Indices: 108004--108063 Score: 86
Period size: 20 Copynumber: 3.0 Consensus size: 20
107994 GCTTTGTATC
108004 GATACATTGTATCGATACAT-
1 GATA-ATTGTATCGATACATG
* *
108024 GTTCATTGTATCGATACATG
1 GATAATTGTATCGATACATG
108044 GATAATTGTATCGATACATG
1 GATAATTGTATCGATACATG
108064 AAACTGTCAG
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
19 15 0.43
20 20 0.57
ACGTcount: A:0.32, C:0.13, G:0.18, T:0.37
Consensus pattern (20 bp):
GATAATTGTATCGATACATG
Found at i:109132 original size:162 final size:162
Alignment explanation
Indices: 108865--109754 Score: 1310
Period size: 162 Copynumber: 5.6 Consensus size: 162
108855 TAACATTTTG
* ** * *
108865 TACCCTAATAGAAGCTTGAAAGAATACGAAAGGTTTTTGAAATGTTTTATACCCCTACAGATGCC
1 TACCCTAATGGAAGCCCGAAAGAATACGAAAGGTTTTTGAAATCTTTTATACCCCTACGGATGCC
108930 CATAGGAATATAAAAGATTAGAAAAAATAAATATTAGAATTTATCCCAATAATACCAATTTAATT
66 CATAGGAATATAAAAGATTAGAAAAAATAAATATTAGAATTTATCCCAATAATACCAATTTAATT
108995 TAATTTTATTTATTTTCGAAAACACCATTTCT
131 TAATTTTATTTATTTTCGAAAACACCATTTCT
*
109027 TACCCTAATGGAAGCCCGAAAGAATACGAAAGGTTTTTGAAATCTTTTATACCCCCACGGATGCC
1 TACCCTAATGGAAGCCCGAAAGAATACGAAAGGTTTTTGAAATCTTTTATACCCCTACGGATGCC
* *
109092 CATAGGAATATAAAAGATTAGAAAAAATAAATACTAGAATTTATCCTAATAATACC-----AATT
66 CATAGGAATATAAAAGATTAGAAAAAATAAATATTAGAATTTATCCCAATAATACCAATTTAATT
*
109152 T-A----ATTTATTTTCGAAAATACCATTT-T
131 TAATTTTATTTATTTTCGAAAACACCATTTCT
* * *
109178 GTACCCTAATGGAAGCCCGAAAGAATATGAAAGG-TTTTGAAATCTTTTATATCCTTACGGATGC
1 -TACCCTAATGGAAGCCCGAAAGAATACGAAAGGTTTTTGAAATCTTTTATACCCCTACGGATGC
* * * *
109242 TCATAGGAATATAAAATATTAGAAAAAATAAATATTAAAATTTATCCCAATAATACCAATTTCAT
65 CCATAGGAATATAAAAGATTAGAAAAAATAAATATTAGAATTTATCCCAATAATACCAATTTAAT
*
109307 TTAATTTTATTTATTTTTGAAAACACCATTTCT
130 TTAATTTTATTTATTTTCGAAAACACCATTTCT
* *
109340 TACCCTAATGGAAGCCCGAAAGAATACGAAAGGTTTTTGAAATCTTTTATACCCCCACGAATGCC
1 TACCCTAATGGAAGCCCGAAAGAATACGAAAGGTTTTTGAAATCTTTTATACCCCTACGGATGCC
* * *
109405 CATAGGAATATAAAATATTAGAAAAAATAAATACTAGAATTTATCCTAATAATACCAATTTAATT
66 CATAGGAATATAAAAGATTAGAAAAAATAAATATTAGAATTTATCCCAATAATACCAATTTAATT
* *
109470 TTATTTTATTTATTTTCGAAAACACCATTTCG
131 TAATTTTATTTATTTTCGAAAACACCATTTCT
** * * * * *
109502 TACCCTAATGGAAGCCTAAAAAAATACAAAAGGTTTTCGAAATCATTTATACCTCTACGGATGCC
1 TACCCTAATGGAAGCCCGAAAGAATACGAAAGGTTTTTGAAATCTTTTATACCCCTACGGATGCC
109567 CATAGGAATATAAAAGATTAGAAAAAATAAATATTAGAATTTATCCCAATAATACC-----AATT
66 CATAGGAATATAAAAGATTAGAAAAAATAAATATTAGAATTTATCCCAATAATACCAATTTAATT
*
109627 TAATTTTATTTATTTTCGAAAACACCATTTCG
131 TAATTTTATTTATTTTCGAAAACACCATTTCT
* * * *
109659 TACCCTAATGGAAGCCCGAAAGAATACGAAAGGTTTTTAAAATCTTTTATACCCATATGGATACC
1 TACCCTAATGGAAGCCCGAAAGAATACGAAAGGTTTTTGAAATCTTTTATACCCCTACGGATGCC
* *
109724 CATAAGAATATAAAAGATTAGAAAAAGTAAA
66 CATAGGAATATAAAAGATTAGAAAAAATAAA
109755 CATGGAAATA
Statistics
Matches: 655, Mismatches: 60, Indels: 31
0.88 0.08 0.04
Matches are distributed among these distances:
151 80 0.12
152 54 0.08
156 5 0.01
157 124 0.19
161 53 0.08
162 339 0.52
ACGTcount: A:0.42, C:0.15, G:0.11, T:0.32
Consensus pattern (162 bp):
TACCCTAATGGAAGCCCGAAAGAATACGAAAGGTTTTTGAAATCTTTTATACCCCTACGGATGCC
CATAGGAATATAAAAGATTAGAAAAAATAAATATTAGAATTTATCCCAATAATACCAATTTAATT
TAATTTTATTTATTTTCGAAAACACCATTTCT
Found at i:109427 original size:313 final size:314
Alignment explanation
Indices: 108858--109754 Score: 1376
Period size: 313 Copynumber: 2.8 Consensus size: 314
108848 TGAGCTTTAA
* * * *
108858 CATTTTGTACCCTAATAGAAGCTTGAAAGAATACGAAAGGTTTTTGAAATGTTTTATACCCCTAC
1 CATTTTGTACCCTAATGGAAGCCTGAAAGAATACGAAAGG-TTTTGAAATCTTTTATA-CCTTAC
*
108923 AGATGCCCATAGGAATATAAAAGATTAGAAAAAATAAATATTAGAATTTATCCCAATAATACCAA
64 GGATGCCCATAGGAATATAAAAGATTAGAAAAAATAAATATTAGAATTTATCCCAATAATACCAA
108988 TTTAATTTAATTTTATTTATTTTCGAAAACACCATTTCTTACCCTAATGGAAGCCCGAAAGAATA
129 TTT-ATTTAATTTTATTTATTTTCGAAAACACCATTTCTTACCCTAATGGAAGCCCGAAAGAATA
109053 CGAAAGGTTTTTGAAATCTTTTATACCCCCACGGATGCCCATAGGAATATAAAAGATTAGAAAAA
193 CGAAAGGTTTTTGAAATCTTTTATACCCCCACGGATGCCCATAGGAATATAAAAGATTAGAAAAA
*
109118 ATAAATACTAGAATTTATCCTAATAATACC-AA-TTTA-ATTTATTTTCGAAAATAC
258 ATAAATACTAGAATTTATCCTAATAATACCTAATTTTATATTTATTTTCGAAAACAC
* *
109172 CATTTTGTACCCTAATGGAAGCCCGAAAGAATATGAAAGGTTTTGAAATCTTTTATATCCTTACG
1 CATTTTGTACCCTAATGGAAGCCTGAAAGAATACGAAAGGTTTTGAAATCTTTTATA-CCTTACG
* * *
109237 GATGCTCATAGGAATATAAAATATTAGAAAAAATAAATATTAAAATTTATCCCAATAATACCAAT
65 GATGCCCATAGGAATATAAAAGATTAGAAAAAATAAATATTAGAATTTATCCCAATAATACCAAT
*
109302 TTCATTTAATTTTATTTATTTTTGAAAACACCATTTCTTACCCTAATGGAAGCCCGAAAGAATAC
130 TT-ATTTAATTTTATTTATTTTCGAAAACACCATTTCTTACCCTAATGGAAGCCCGAAAGAATAC
* *
109367 GAAAGGTTTTTGAAATCTTTTATACCCCCACGAATGCCCATAGGAATATAAAATATTAGAAAAAA
194 GAAAGGTTTTTGAAATCTTTTATACCCCCACGGATGCCCATAGGAATATAAAAGATTAGAAAAAA
109432 TAAATACTAGAATTTATCCTAATAATACCAATTTAATTTTATTTTATTTATTTTCGAAAACAC
259 TAAATACTAGAATTTATCCTAATAATACC----TAATTTTA---TATTTATTTTCGAAAACAC
* * * * *
109495 CATTTCGTACCCTAATGGAAGCCTAAAAAAATACAAAAGGTTTTCGAAATCATTTATACCTCTAC
1 CATTTTGTACCCTAATGGAAGCCTGAAAGAATACGAAAGGTTTT-GAAATCTTTTATACCT-TAC
109560 GGATGCCCATAGGAATATAAAAGATTAGAAAAAATAAATATTAGAATTTATCCCAATAATACC-A
64 GGATGCCCATAGGAATATAAAAGATTAGAAAAAATAAATATTAGAATTTATCCCAATAATACCAA
*
109624 ---ATTTAATTTTATTTATTTTCGAAAACACCATTTCGTACCCTAATGGAAGCCCGAAAGAATAC
129 TTTATTTAATTTTATTTATTTTCGAAAACACCATTTCTTACCCTAATGGAAGCCCGAAAGAATAC
* ** * * * *
109686 GAAAGGTTTTTAAAATCTTTTATACCCATATGGATACCCATAAGAATATAAAAGATTAGAAAAAG
194 GAAAGGTTTTTGAAATCTTTTATACCCCCACGGATGCCCATAGGAATATAAAAGATTAGAAAAAA
109751 TAAA
259 TAAA
109755 CATGGAAATA
Statistics
Matches: 534, Mismatches: 37, Indels: 19
0.91 0.06 0.03
Matches are distributed among these distances:
313 238 0.45
314 36 0.07
318 2 0.00
319 124 0.23
323 59 0.11
324 75 0.14
ACGTcount: A:0.41, C:0.15, G:0.11, T:0.32
Consensus pattern (314 bp):
CATTTTGTACCCTAATGGAAGCCTGAAAGAATACGAAAGGTTTTGAAATCTTTTATACCTTACGG
ATGCCCATAGGAATATAAAAGATTAGAAAAAATAAATATTAGAATTTATCCCAATAATACCAATT
TATTTAATTTTATTTATTTTCGAAAACACCATTTCTTACCCTAATGGAAGCCCGAAAGAATACGA
AAGGTTTTTGAAATCTTTTATACCCCCACGGATGCCCATAGGAATATAAAAGATTAGAAAAAATA
AATACTAGAATTTATCCTAATAATACCTAATTTTATATTTATTTTCGAAAACAC
Found at i:110584 original size:13 final size:12
Alignment explanation
Indices: 110547--110596 Score: 57
Period size: 12 Copynumber: 4.2 Consensus size: 12
110537 TCTCTACCTA
*
110547 TTTTCTCTATTT
1 TTTTCTCTCTTT
110559 TTTTCTCTCTTT
1 TTTTCTCTCTTT
* *
110571 TCTT-TCTCATT
1 TTTTCTCTCTTT
*
110582 TTTTCTGTCTTT
1 TTTTCTCTCTTT
110594 TTT
1 TTT
110597 CAGCTGACCA
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
11 9 0.29
12 22 0.71
ACGTcount: A:0.04, C:0.20, G:0.02, T:0.74
Consensus pattern (12 bp):
TTTTCTCTCTTT
Found at i:110597 original size:25 final size:25
Alignment explanation
Indices: 110548--110594 Score: 71
Period size: 23 Copynumber: 2.0 Consensus size: 25
110538 CTCTACCTAT
110548 TTTCTCTATTTTTTTCTCTCTTTTC
1 TTTCTCTATTTTTTTCTCTCTTTTC
*
110573 TTTCTC-A-TTTTTTCTGTCTTTT
1 TTTCTCTATTTTTTTCTCTCTTTT
110595 TTCAGCTGAC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 14 0.67
24 1 0.05
25 6 0.29
ACGTcount: A:0.04, C:0.21, G:0.02, T:0.72
Consensus pattern (25 bp):
TTTCTCTATTTTTTTCTCTCTTTTC
Found at i:117226 original size:20 final size:20
Alignment explanation
Indices: 117163--117238 Score: 73
Period size: 20 Copynumber: 3.8 Consensus size: 20
117153 ATTTGCCTGC
***
117163 ATGTATCGATACATTTCCCA
1 ATGTATCGATACATTGATCA
**
117183 GATGTATCGATACAAAGATCA
1 -ATGTATCGATACATTGATCA
117204 ATGTATCGATACATTGAAT-A
1 ATGTATCGATACATTG-ATCA
*
117224 ATGTATCGAAACATT
1 ATGTATCGATACATT
117239 TCCTTGGCAG
Statistics
Matches: 46, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
20 29 0.63
21 17 0.37
ACGTcount: A:0.38, C:0.16, G:0.14, T:0.32
Consensus pattern (20 bp):
ATGTATCGATACATTGATCA
Found at i:119579 original size:60 final size:59
Alignment explanation
Indices: 119498--120262 Score: 382
Period size: 60 Copynumber: 12.6 Consensus size: 59
119488 TTGCATTCCT
* * **
119498 TTTTC-TTCAAAGTCCATAACTCTATGGCACC-CTTTTAAGTCCACAACTCAGTGGCACC
1 TTTTCTTTTAAAGTCCACAACTCCGTGGCACCTCTTTTAAGTCCACAACTC-GTGGCACC
*** * *
119556 TTTTTCTTTTAAAGTCCACAACTCTACGGCATCCTTTTTCTTTTTAAGTCCATAACTTCTTGGCA
1 -TTTTCTTTTAAAGTCCACAACTCCGTGGCA-CC----TC-TTTTAAGTCCACAAC-TCGTGGCA
119621 CC
58 CC
* * * *
119623 --CT-TTTTAAAGTCCATAACTCCGTGGCACCTTTCTTGTAAAGTCCACAACTCTGTGACACC
1 TTTTCTTTTAAAGTCCACAACTCCGTGGCACC--TCTT-TTAAGTCCACAACTC-GTGGCACC
* * * *
119683 ----CTTTTTAAGTCCACAACTCCGTGGCACCT-TTTTAAGTCTACAACTTAGTGACACC
1 TTTTCTTTTAAAGTCCACAACTCCGTGGCACCTCTTTTAAGTCCACAAC-TCGTGGCACC
* *
119738 TTTTTCTTTTAAAGTCCACAACTTCGTGGCATCCTTTTCTTTTAAGTCCACAACTTTGTGGCACC
1 -TTTTCTTTTAAAGTCCACAACTCCGTGGCA-CC---TCTTTTAAGTCCACAAC-TCGTGGCACC
* * * * *
119803 ----CTTTTTAAGTCCATAACTCTGTGGTACC-CTTTTTAAAGTCCACAACTCCGTGGTA-C
1 TTTTCTTTTAAAGTCCACAACTCCGTGGCACCTC-TTTT-AAGTCCACAACT-CGTGGCACC
* * * *
119859 TTTTCCTTTTAAAGTCAATAACTCCGTGGCACCTTTCTTTTAAAGTCCATAACTTCGTGGTACC
1 TTTT-CTTTTAAAGTCCACAACTCCGTGGCACC--TCTTTT-AAGTCCACAAC-TCGTGGCACC
* * * * *
119923 TTTT-TTTTAAAGTTCATAACTCCATGGCACC-CTTTTTAAAGTTCACAATTTCGTGGCACC
1 TTTTCTTTTAAAGTCCACAACTCCGTGGCACCTC-TTTT-AAGTCCACAA-CTCGTGGCACC
* ** * *
119983 ----CTTTTTAAGTCCACAACTTAGTGGCACCATTTTCTTTTAAAGTCCACAACTCCGTGGGATT
1 TTTTCTTTTAAAGTCCACAACTCCGTGGCACC----TCTTTT-AAGTCCACAACT-CGTGGCA-C
120044 C
59 C
* *
120045 TGTTT-TTTTTAAGTACACAACTCCGTGGCACGCT-TTTTAAGTCCACAACTTCGTGGCACC
1 T-TTTCTTTTAAAGTCCACAACTCCGTGGCAC-CTCTTTTAAGTCCACAAC-TCGTGGCACC
* * * *
120105 ---CCTTTTAAAGTCCATAACTCTGTGGCATCTCTCTTTTAAAGTCCATAACTCTGTGGCACC
1 TTTTCTTTTAAAGTCCACAACTCCGTGGCA-C-CTCTTTT-AAGTCCACAACTC-GTGGCACC
* * * * * * *
120165 TTTT-TTTTAAAGCCCACAACTCCATGGTACCTTTCTCTTAAACTCCACAACTCCATGGCACA
1 TTTTCTTTTAAAGTCCACAACTCCGTGGCACC--TCT-TTTAAGTCCACAACT-CGTGGCACC
* * *
120227 TTTTTTTTTCAAAGTCTACAAC-CTTGTGGCACCTCT
1 TTTTCTTTT-AAAGTCCACAACTC-CGTGGCACCTCT
120263 CAAAGCCCAC
Statistics
Matches: 557, Mismatches: 81, Indels: 133
0.72 0.11 0.17
Matches are distributed among these distances:
55 20 0.04
56 9 0.02
57 59 0.11
58 3 0.01
59 43 0.08
60 130 0.23
61 66 0.12
62 79 0.14
63 52 0.09
64 25 0.04
65 23 0.04
66 24 0.04
67 22 0.04
68 2 0.00
ACGTcount: A:0.24, C:0.27, G:0.12, T:0.37
Consensus pattern (59 bp):
TTTTCTTTTAAAGTCCACAACTCCGTGGCACCTCTTTTAAGTCCACAACTCGTGGCACC
Found at i:119597 original size:34 final size:32
Alignment explanation
Indices: 119529--119792 Score: 132
Period size: 33 Copynumber: 8.5 Consensus size: 32
119519 CTATGGCACC
*
119529 CTTTTAAGTCCACAACTCAGTGGCACCTTTTT
1 CTTTTAAGTCCACAACTCAGCGGCACCTTTTT
119561 CTTTTAAAGTCCACAACTCTA-CGGCATCCTTTTT
1 CTTTT-AAGTCCACAACTC-AGCGGCA-CCTTTTT
* ** *
119595 CTTTTTAAGTCCATAACTTC-TTGGCACC--CTT
1 C-TTTTAAGTCCACAAC-TCAGCGGCACCTTTTT
* * * *
119626 -TTTAAAGTCCATAACTCCGTGGCACC--TTT
1 CTTTTAAGTCCACAACTCAGCGGCACCTTTTT
* * * * *
119655 CTTGTAAAGTCCACAACTCTGTGACACC---CT
1 CTT-TTAAGTCCACAACTCAGCGGCACCTTTTT
* *
119685 -TTTTAAGTCCACAACTCCGTGGCACC----T
1 CTTTTAAGTCCACAACTCAGCGGCACCTTTTT
* * * *
119712 -TTTTAAGTCTACAACTTAGTGACACCTTTTT
1 CTTTTAAGTCCACAACTCAGCGGCACCTTTTT
*
119743 CTTTTAAAGTCCACAACTTC-GTGGCATCC-TTTT
1 CTTTT-AAGTCCACAAC-TCAGCGGCA-CCTTTTT
119776 CTTTTAAGTCCACAACT
1 CTTTTAAGTCCACAACT
119793 TTGTGGCACC
Statistics
Matches: 194, Mismatches: 21, Indels: 35
0.78 0.08 0.14
Matches are distributed among these distances:
27 23 0.12
28 23 0.12
29 25 0.13
30 3 0.02
31 25 0.13
32 20 0.10
33 43 0.22
34 26 0.13
35 6 0.03
ACGTcount: A:0.23, C:0.28, G:0.11, T:0.37
Consensus pattern (32 bp):
CTTTTAAGTCCACAACTCAGCGGCACCTTTTT
Found at i:119606 original size:94 final size:92
Alignment explanation
Indices: 119507--120259 Score: 521
Period size: 94 Copynumber: 8.2 Consensus size: 92
119497 TTTTTCTTCA
* *
119507 AAGTCCATAACTCTATGGCACCCTTTTAAGTCCACAACTCAGTGGCACCTTTTTCTTTTAAAGTC
1 AAGTCCACAACTCTGTGGCACCCTTTTAAGTCCACAACTCAGTGGCACC-TTTTCTTTTAAAGTC
**
119572 CACAACTCTACGGCATCCTTTTTCTTTTT
65 CACAACTCTGTGGCATCC-TTTTCTTTTT
* * * *
119601 AAGTCCATAACTTCT-TGGCACCCTTTTTAAAGTCCATAACTCCGTGGCACC-TTTCTTGTAAAG
1 AAGTCCACAAC-TCTGTGGCACCC-TTTT-AAGTCCACAACTCAGTGGCACCTTTTCTTTTAAAG
*
119664 TCCACAACTCTGTGACA-CC----CTTTTT
63 TCCACAACTCTGTGGCATCCTTTTCTTTTT
* * * * *
119689 AAGTCCACAACTCCGTGGCACCTTTTTAAGTCTACAACTTAGTGACACCTTTTTCTTTTAAAGTC
1 AAGTCCACAACTCTGTGGCACCCTTTTAAGTCCACAACTCAGTGGCACC-TTTTCTTTTAAAGTC
119754 CACAACT-TCGTGGCATCCTTTTC-TTTT
65 CACAACTCT-GTGGCATCCTTTTCTTTTT
* * * * *
119781 AAGTCCACAACTTTGTGGCACCCTTTTTAAGTCCATAACTCTGTGGTACC--CT-TTTTAAAGTC
1 AAGTCCACAACTCTGTGGCACCC-TTTTAAGTCCACAACTCAGTGGCACCTTTTCTTTTAAAGTC
* * *
119843 CACAACTCCGTGG--TACTTTTCCTTTTA
65 CACAACTCTGTGGCATCCTTTT-CTTTTT
* * * * *
119870 AAGTCAATAACTCCGTGGCACCTTTCTTTTAAAGTCCATAACTTC-GTGGTACCTTTT-TTTTAA
1 AAGTCCACAACTCTGTGGCACC---CTTTT-AAGTCCACAAC-TCAGTGGCACCTTTTCTTTTAA
* * **
119933 AGTTCATAACTCCATGGCA-CC----CTTTTT
61 AGTCCACAACTCTGTGGCATCCTTTTCTTTTT
* * *
119960 AAAGTTCACAA-TTTCGTGGCACCCTTTTTAAGTCCACAACTTAGTGGCACCATTTTCTTTTAAA
1 -AAGTCCACAACTCT-GTGGCACCC-TTTTAAGTCCACAACTCAGTGGCACC-TTTTCTTTTAAA
* * *
120024 GTCCACAACTCCGTGGGATTCTGTTT-TTTTT
62 GTCCACAACTCTGTGGCATCCT-TTTCTTTTT
* * * *
120055 AAGTACACAACTCCGTGGCACGCTTTTTAAGTCCACAACTTC-GTGGCACC---CCTTTTAAAGT
1 AAGTCCACAACTCTGTGGCAC-CCTTTTAAGTCCACAAC-TCAGTGGCACCTTTTCTTTTAAAGT
* * *
120116 CCATAACTCTGTGGCAT-C-TCTCTTTTA
64 CCACAACTCTGTGGCATCCTTTTCTTTTT
* * * * *
120143 AAGTCCATAACTCTGTGGCACCTTTTTTTTAAAGCCCACAACTCCA-TGGTACC-TTTCTCTTAA
1 AAGTCCACAACTCTGTGGCACC---CTTTT-AAGTCCACAACT-CAGTGGCACCTTTTCTTTTAA
* ** *
120206 ACTCCACAACTCCATGGCA-CATTTT-TTTTT
61 AGTCCACAACTCTGTGGCATCCTTTTCTTTTT
*
120236 CAAAGTCTACAAC-CTTGTGGCACC
1 --AAGTCCACAACTC-TGTGGCACC
120260 TCTCAAAGCC
Statistics
Matches: 526, Mismatches: 79, Indels: 107
0.74 0.11 0.15
Matches are distributed among these distances:
86 17 0.03
87 17 0.03
88 89 0.17
89 53 0.10
90 58 0.11
91 37 0.07
92 44 0.08
93 50 0.10
94 107 0.20
95 34 0.06
96 20 0.04
ACGTcount: A:0.24, C:0.27, G:0.13, T:0.36
Consensus pattern (92 bp):
AAGTCCACAACTCTGTGGCACCCTTTTAAGTCCACAACTCAGTGGCACCTTTTCTTTTAAAGTCC
ACAACTCTGTGGCATCCTTTTCTTTTT
Found at i:119666 original size:31 final size:30
Alignment explanation
Indices: 119499--120225 Score: 457
Period size: 31 Copynumber: 24.0 Consensus size: 30
119489 TGCATTCCTT
* * **
119499 TTTCTTCAAAGTCCATAACTCTATGGCACC
1 TTTCTTTAAAGTCCACAACTCCGTGGCACC
* *
119529 ---CTTTTAAGTCCACAACTCAGTGGCACC
1 TTTCTTTAAAGTCCACAACTCCGTGGCACC
***
119556 TTTTTCTTTTAAAGTCCACAACTCTACGGCATCC
1 --TTTC-TTTAAAGTCCACAACTCCGTGGCA-CC
* * * *
119590 TTTTTCTTTTTAAGTCCATAACTTCTTGGCACC
1 --TTTC-TTTAAAGTCCACAACTCCGTGGCACC
* *
119623 CTT-TTTAAAGTCCATAACTCCGTGGCACC
1 TTTCTTTAAAGTCCACAACTCCGTGGCACC
* *
119652 TTTCTTGTAAAGTCCACAACTCTGTGACACC
1 TTTCTT-TAAAGTCCACAACTCCGTGGCACC
*
119683 CTT-TTT-AAGTCCACAACTCCGTGGCACC
1 TTTCTTTAAAGTCCACAACTCCGTGGCACC
* ** *
119711 -TT-TTT-AAGTCTACAACTTAGTGACACC
1 TTTCTTTAAAGTCCACAACTCCGTGGCACC
*
119738 TTTTTCTTTTAAAGTCCACAACTTCGTGGCATCC
1 --TTTC-TTTAAAGTCCACAACTCCGTGGCA-CC
* **
119772 TTTTCTTTTAAGTCCACAACTTTGTGGCACC
1 -TTTCTTTAAAGTCCACAACTCCGTGGCACC
* * * *
119803 CTT-TTT-AAGTCCATAACTCTGTGGTACC
1 TTTCTTTAAAGTCCACAACTCCGTGGCACC
* * *
119831 CTT-TTTAAAGTCCACAACTCCGTGGTACT
1 TTTCTTTAAAGTCCACAACTCCGTGGCACC
* *
119860 TTTCCTTTTAAAGTCAATAACTCCGTGGCACC
1 TTT-C-TTTAAAGTCCACAACTCCGTGGCACC
* * *
119892 TTTCTTTTAAAGTCCATAACTTCGTGGTACC
1 TTTC-TTTAAAGTCCACAACTCCGTGGCACC
* * * *
119923 TTTTTTTTAAAGTTCATAACTCCATGGCACC
1 -TTTCTTTAAAGTCCACAACTCCGTGGCACC
* * * *
119954 CTT-TTTAAAGTTCACAATTTCGTGGCACC
1 TTTCTTTAAAGTCCACAACTCCGTGGCACC
* **
119983 CTT-TTT-AAGTCCACAACTTAGTGGCACC
1 TTTCTTTAAAGTCCACAACTCCGTGGCACC
* *
120011 ATTTTCTTTTAAAGTCCACAACTCCGTGGGATTCTG
1 --TTTC-TTTAAAGTCCACAACTCCGTGGCA--C-C
* * *
120047 TTTTTTTTAAGTACACAACTCCGTGGCACGC
1 TTTCTTTAAAGTCCACAACTCCGTGGCAC-C
*
120078 -TT-TTT-AAGTCCACAACTTCGTGGCACC
1 TTTCTTTAAAGTCCACAACTCCGTGGCACC
** * * *
120105 CCT-TTTAAAGTCCATAACTCTGTGGCATC
1 TTTCTTTAAAGTCCACAACTCCGTGGCACC
* * *
120134 TCTCTTTTAAAGTCCATAACTCTGTGGCACC
1 TTTC-TTTAAAGTCCACAACTCCGTGGCACC
* * * *
120165 TTTTTTTTAAAGCCCACAACTCCATGGTACC
1 -TTTCTTTAAAGTCCACAACTCCGTGGCACC
* *
120196 TTTCTCTTAAACTCCACAACTCCATGGCAC
1 TTTCT-TTAAAGTCCACAACTCCGTGGCAC
120226 ATTTTTTTTT
Statistics
Matches: 568, Mismatches: 94, Indels: 69
0.78 0.13 0.09
Matches are distributed among these distances:
27 46 0.08
28 87 0.15
29 101 0.18
30 18 0.03
31 142 0.25
32 59 0.10
33 82 0.14
34 32 0.06
35 1 0.00
ACGTcount: A:0.24, C:0.28, G:0.13, T:0.36
Consensus pattern (30 bp):
TTTCTTTAAAGTCCACAACTCCGTGGCACC
Found at i:119748 original size:32 final size:33
Alignment explanation
Indices: 119529--120110 Score: 180
Period size: 28 Copynumber: 19.0 Consensus size: 33
119519 CTATGGCACC
*
119529 CTTTTAAGTCCACAACTCAGTGGCA-CCTTTTT
1 CTTTTAAGTCCACAACTTAGTGGCACCCTTTTT
* *
119561 CTTTTAAAGTCCACAACTCTA-CGGCATCCTTTTT
1 CTTTT-AAGTCCACAACT-TAGTGGCACCCTTTTT
* **
119595 CTTTTTAAGTCCATAACTTCTTGGCACCC---TT
1 C-TTTTAAGTCCACAACTTAGTGGCACCCTTTTT
* * **
119626 -TTTAAAGTCCATAACTCCGTGGCA-CC--TTT
1 CTTTTAAGTCCACAACTTAGTGGCACCCTTTTT
* *
119655 CTTGTAAAGTCCACAACTCT-GTGACACCC----T
1 CTT-TTAAGTCCACAACT-TAGTGGCACCCTTTTT
**
119685 -TTTTAAGTCCACAACTCCGTGGCA-CC----T
1 CTTTTAAGTCCACAACTTAGTGGCACCCTTTTT
* *
119712 -TTTTAAGTCTACAACTTAGTGACA-CCTTTTT
1 CTTTTAAGTCCACAACTTAGTGGCACCCTTTTT
* *
119743 CTTTTAAAGTCCACAACTTCGTGGCATCC-TTTT
1 CTTTT-AAGTCCACAACTTAGTGGCACCCTTTTT
*
119776 CTTTTAAGTCCACAACTTTGTGGCACCC----T
1 CTTTTAAGTCCACAACTTAGTGGCACCCTTTTT
* *
119805 -TTTTAAGTCCATAACTCT-GTGGTACCC---TT
1 CTTTTAAGTCCACAACT-TAGTGGCACCCTTTTT
* ** * *
119834 -TTTAAAGTCCACAACTCCGTGGTA--CTTTTC
1 CTTTTAAGTCCACAACTTAGTGGCACCCTTTTT
* * **
119864 CTTTTAAAGTCAATAACTCCGTGGCA-CC--TTT
1 CTTTT-AAGTCCACAACTTAGTGGCACCCTTTTT
* * *
119895 CTTTTAAAGTCCATAACTTCGTGGTA-CCTTTTT
1 CTTTT-AAGTCCACAACTTAGTGGCACCCTTTTT
* * * *
119928 -TTTAAAGTTCATAACTCCA-TGGCACCC---TT
1 CTTTTAAGTCCACAACT-TAGTGGCACCCTTTTT
* * * *
119957 -TTTAAAGTTCACAATTTCGTGGCACCC----T
1 CTTTTAAGTCCACAACTTAGTGGCACCCTTTTT
*
119985 -TTTTAAGTCCACAACTTAGTGGCA-CCATTTT
1 CTTTTAAGTCCACAACTTAGTGGCACCCTTTTT
** * **
120016 CTTTTAAAGTCCACAACTCCGTGGGATTCTGTTTT
1 CTTTT-AAGTCCACAACTTAGTGGCACCCT-TTTT
* ** *
120051 -TTTTAAGTACACAACTCCGTGGCACGC----T
1 CTTTTAAGTCCACAACTTAGTGGCACCCTTTTT
* *
120079 -TTTTAAGTCCACAACTTCGTGGCACCCCTTTT
1 CTTTTAAGTCCACAACTTAGTGGCACCCTTTTT
120111 AAAGTCCATA
Statistics
Matches: 443, Mismatches: 63, Indels: 88
0.75 0.11 0.15
Matches are distributed among these distances:
27 28 0.06
28 89 0.20
29 72 0.16
30 4 0.01
31 67 0.15
32 59 0.13
33 83 0.19
34 33 0.07
35 8 0.02
ACGTcount: A:0.23, C:0.27, G:0.13, T:0.37
Consensus pattern (33 bp):
CTTTTAAGTCCACAACTTAGTGGCACCCTTTTT
Found at i:120143 original size:273 final size:269
Alignment explanation
Indices: 119522--120225 Score: 840
Period size: 273 Copynumber: 2.6 Consensus size: 269
119512 CATAACTCTA
* * **
119522 TGGCACCCTTTTAAGTCCACAACTCAGTGGCACCTTTTTCTTTTAAAGTCCACAACTCTACGGCA
1 TGGCACCTTTTTAAGTCCACAACTCAGTGGCACC----CCTTTTAAAGTCCACAACTCTGTGGCA
* * * * *
119587 TCCTTTTTCTTTTTAAGTCCATAACTTCTTGGCACC-CTTTTTAAAGTCCATAACTCCGTGGCAC
62 T-C-TTTTCTTTTAAAGTCCATAACTCCGTGGCACCTTTTTTTAAAGTCCATAACTCCGTGGTAC
* ** *
119651 CTTTCTTGTAAAGTCCACAACTCTGTGACACCCTTTTTAAGTCCACAACTCCGTGGCACCTTTTT
125 CTTTCTTTTAAAGTCCACAACTCCATGGCACCCTTTTTAAGTCCACAACTCCGTGGCACCTTTTT
* * *
119716 AAGTCTACAACTTAGTGACACCTTTTTCTTTTAAAGTCCACAACTTCGTGGCATCCTTTTCTTTT
190 AAGTCCACAACTTAGTGACACCATTTTCTTTTAAAGTCCACAACTCCGTGGCATCCTTTTCTTTT
* **
119781 AAGTCCACAACTTTG
255 AAGTACACAACTCCG
* * * * * *
119796 TGGCACCCTTTTTAAGTCCATAACTCTGTGGTACCCTTTTTAAAGTCCACAACTCCGTGGTA-CT
1 TGGCA-CCTTTTTAAGTCCACAACTCAGTGGCACCCCTTTTAAAGTCCACAACTCTGTGGCATCT
* *
119860 TTTCCTTTTAAAGTCAATAACTCCGTGGCACCTTTCTTTTAAAGTCCATAACTTCGTGGTACCTT
65 TTT-CTTTTAAAGTCCATAACTCCGTGGCACCTTT-TTTTAAAGTCCATAACTCCGTGGTACCTT
* * * * * *
119925 TTTTTTAAAGTTCATAACTCCATGGCACCCTTTTTAAAGTTCACAATTTCGTGGCACCCTTTTTA
128 TCTTTTAAAGTCCACAACTCCATGGCACCCTTTTT-AAGTCCACAACTCCGTGGCA-CCTTTTTA
* * * *
119990 AGTCCACAACTTAGTGGCACCATTTTCTTTTAAAGTCCACAACTCCGTGGGATTCTGTTTTTTTT
191 AGTCCACAACTTAGTGACACCATTTTCTTTTAAAGTCCACAACTCCGTGGCATCCT-TTTCTTTT
120055 AAGTACACAACTCCG
255 AAGTACACAACTCCG
*
120070 TGGCACGCTTTTTAAGTCCACAACTTC-GTGGCACCCCTTTTAAAGTCCATAACTCTGTGGCATC
1 TGGCAC-CTTTTTAAGTCCACAAC-TCAGTGGCACCCCTTTTAAAGTCCACAACTCTGTGGCATC
* * * * *
120134 -TCTCTTTTAAAGTCCATAACTCTGTGGCACCTTTTTTTTAAAGCCCACAACTCCATGGTACCTT
64 TTTTCTTTTAAAGTCCATAACTCCGTGGCACC-TTTTTTTAAAGTCCATAACTCCGTGGTACCTT
* *
120198 TCTCTTAAACTCCACAACTCCATGGCAC
128 TCTTTTAAAGTCCACAACTCCATGGCAC
120226 ATTTTTTTTT
Statistics
Matches: 364, Mismatches: 55, Indels: 23
0.82 0.12 0.05
Matches are distributed among these distances:
268 4 0.01
269 25 0.07
270 1 0.00
271 76 0.21
272 17 0.05
273 133 0.37
274 80 0.22
275 28 0.08
ACGTcount: A:0.23, C:0.28, G:0.13, T:0.36
Consensus pattern (269 bp):
TGGCACCTTTTTAAGTCCACAACTCAGTGGCACCCCTTTTAAAGTCCACAACTCTGTGGCATCTT
TTCTTTTAAAGTCCATAACTCCGTGGCACCTTTTTTTAAAGTCCATAACTCCGTGGTACCTTTCT
TTTAAAGTCCACAACTCCATGGCACCCTTTTTAAGTCCACAACTCCGTGGCACCTTTTTAAGTCC
ACAACTTAGTGACACCATTTTCTTTTAAAGTCCACAACTCCGTGGCATCCTTTTCTTTTAAGTAC
ACAACTCCG
Found at i:120392 original size:33 final size:33
Alignment explanation
Indices: 120264--120705 Score: 465
Period size: 33 Copynumber: 13.7 Consensus size: 33
120254 GGCACCTCTC
* *
120264 AAAGCCCACATAAGTCGGTGGCAACCCCTTT-T
1 AAAGCCCACACAAGTCGGTGGCAACCCTTTTCT
*
120296 AAAACCCACACAAGTCGGTGGC-ACCCTTTT-T
1 AAAGCCCACACAAGTCGGTGGCAACCCTTTTCT
** * * *
120327 AAAGCTGACATAAGTCGGTGGTAACCC-CTTCT
1 AAAGCCCACACAAGTCGGTGGCAACCCTTTTCT
120359 AAAGCCCACACAAGTCGGTGGCAACCCTTTTCT
1 AAAGCCCACACAAGTCGGTGGCAACCCTTTTCT
* ** *
120392 AAACCCCACACAAGTTAGTGGCAACCC-CTTCT
1 AAAGCCCACACAAGTCGGTGGCAACCCTTTTCT
* ** *
120424 AATG-CCACACAAGTCAATGGCAACCC-CTTC-
1 AAAGCCCACACAAGTCGGTGGCAACCCTTTTCT
* * *
120454 AAAGCCCACACAAATCGATGGCAACCCTTCTCT
1 AAAGCCCACACAAGTCGGTGGCAACCCTTTTCT
* * *
120487 AAAGCCCACACAGGTCAGTGGCAACCCCTTT-T
1 AAAGCCCACACAAGTCGGTGGCAACCCTTTTCT
* *
120519 AAAGCCCACACAAGTCGATGGCAACCTTTTTCT
1 AAAGCCCACACAAGTCGGTGGCAACCCTTTTCT
* *
120552 AAAGCCCACACAAGTCAGTGGCAACCCTTCTCT
1 AAAGCCCACACAAGTCGGTGGCAACCCTTTTCT
* * *
120585 AAAGCCCACATAAGTCGATGG-AAACCTCTTTCT
1 AAAGCCCACACAAGTCGGTGGCAACCCT-TTTCT
* ** *
120618 AAAGTCCACATGAGTCGGTGGCAACCC-CTTCT
1 AAAGCCCACACAAGTCGGTGGCAACCCTTTTCT
* * *
120650 AAAGCCCACATAAGTCGGTGGTAACCCCTTTCT
1 AAAGCCCACACAAGTCGGTGGCAACCCTTTTCT
*
120683 AAAGCCCACATAAGTCGGTGGCA
1 AAAGCCCACACAAGTCGGTGGCA
120706 TCTCCTTCTA
Statistics
Matches: 343, Mismatches: 57, Indels: 19
0.82 0.14 0.05
Matches are distributed among these distances:
30 3 0.01
31 71 0.21
32 116 0.34
33 149 0.43
34 4 0.01
ACGTcount: A:0.30, C:0.32, G:0.17, T:0.21
Consensus pattern (33 bp):
AAAGCCCACACAAGTCGGTGGCAACCCTTTTCT
Found at i:120713 original size:65 final size:64
Alignment explanation
Indices: 120264--120721 Score: 482
Period size: 65 Copynumber: 7.1 Consensus size: 64
120254 GGCACCTCTC
* *
120264 AAAGCCCACATAAGTCGGTGGCAACCCCTTT-TAAAACCCACACAAGTCGGTGGC-ACCCTTTTT
1 AAAGCCCACATAAGTCGGTGGCAACCCCTTTCTAAAGCCCACACAAGTCGGTGGCAACCC-TTCT
** *
120327 AAAGCTGACATAAGTCGGTGGTAACCCC-TTCTAAAGCCCACACAAGTCGGTGGCAACCCTTTTC
1 AAAGCCCACATAAGTCGGTGGCAACCCCTTTCTAAAGCCCACACAAGTCGGTGGCAACCC--TTC
120391 T
64 T
* * ** * **
120392 AAACCCCACACAAGTTAGTGGCAACCCC-TTCTAATG-CCACACAAGTCAATGGCAACCCCTTC-
1 AAAGCCCACATAAGTCGGTGGCAACCCCTTTCTAAAGCCCACACAAGTCGGTGGCAA-CCCTTCT
* * * * * *
120454 AAAGCCCACACAAATCGATGGCAA-CCCTTCTCTAAAGCCCACACAGGTCAGTGGCAACCCCTTT
1 AAAGCCCACATAAGTCGGTGGCAACCCCTT-TCTAAAGCCCACACAAGTCGGTGGCAA-CCCTTC
120518 T
64 T
* * ** *
120519 AAAGCCCACACAAGTCGATGGCAACCTTTTTCTAAAGCCCACACAAGTCAGTGGCAACCCTTCTC
1 AAAGCCCACATAAGTCGGTGGCAACCCCTTTCTAAAGCCCACACAAGTCGGTGGCAACCC-T-TC
120584 T
64 T
* * * * **
120585 AAAGCCCACATAAGTCGATGGAAACCTCTTTCTAAAGTCCACATGAGTCGGTGGCAACCCCTTCT
1 AAAGCCCACATAAGTCGGTGGCAACCCCTTTCTAAAGCCCACACAAGTCGGTGGCAA-CCCTTCT
* * *
120650 AAAGCCCACATAAGTCGGTGGTAACCCCTTTCTAAAGCCCACATAAGTCGGTGGCATCTCCTTCT
1 AAAGCCCACATAAGTCGGTGGCAACCCCTTTCTAAAGCCCACACAAGTCGGTGGCAAC-CCTTCT
120715 -AAGCCCA
1 AAAGCCCA
120722 ATGTCGTTGA
Statistics
Matches: 340, Mismatches: 42, Indels: 25
0.84 0.10 0.06
Matches are distributed among these distances:
61 3 0.01
62 22 0.06
63 56 0.16
64 55 0.16
65 145 0.43
66 56 0.16
67 3 0.01
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (64 bp):
AAAGCCCACATAAGTCGGTGGCAACCCCTTTCTAAAGCCCACACAAGTCGGTGGCAACCCTTCT
Found at i:120874 original size:52 final size:52
Alignment explanation
Indices: 120790--121112 Score: 283
Period size: 52 Copynumber: 6.2 Consensus size: 52
120780 AATATTATTA
* * * *
120790 GCCTTGAATC-GACATATTGGCACTTTTATCATTTTTAGGCCCAATGTCGTTG
1 GCCTTGAATCAG-CACATTGGCACTTTTCTCATTTTTAAGTCCAATGTCGTTG
* * *
120842 GCCTTGAATCAGCACATTGGCATTTTTCTCATTTTCAAG-CCTAATGTCGCTG
1 GCCTTGAATCAGCACATTGGCACTTTTCTCATTTTTAAGTCC-AATGTCGTTG
* * * * * * *
120894 ACCTTGAATCAACGCGTTGGCACTCTTCTCATCTTTAAGTCTAATGTCGTTG
1 GCCTTGAATCAGCACATTGGCACTTTTCTCATTTTTAAGTCCAATGTCGTTG
* * * * * *
120946 GCCTTGAATCAGTACATTAGCA-TTCTCCTCACTTTTAAGTCCAATATCGCTG
1 GCCTTGAATCAGCACATTGGCACTT-TTCTCATTTTTAAGTCCAATGTCGTTG
* * * *
120998 GCCTTGAATCAGCATATTGGCACCTTTTATCATCTTTAAGTCCAATGTTGTTG
1 GCCTTGAATCAGCACATTGGCA-CTTTTCTCATTTTTAAGTCCAATGTCGTTG
* * * * ** * * * *
121051 GCCTTGAATCAGCATATTGACACTCTTATCATCATTAAGTCTAGTGTCATAG
1 GCCTTGAATCAGCACATTGGCACTTTTCTCATTTTTAAGTCCAATGTCGTTG
121103 GCCTTGAATC
1 GCCTTGAATC
121113 TACATACTGG
Statistics
Matches: 218, Mismatches: 47, Indels: 12
0.79 0.17 0.04
Matches are distributed among these distances:
51 3 0.01
52 170 0.78
53 43 0.20
54 2 0.01
ACGTcount: A:0.23, C:0.24, G:0.17, T:0.37
Consensus pattern (52 bp):
GCCTTGAATCAGCACATTGGCACTTTTCTCATTTTTAAGTCCAATGTCGTTG
Found at i:121106 original size:105 final size:104
Alignment explanation
Indices: 120790--121125 Score: 333
Period size: 104 Copynumber: 3.2 Consensus size: 104
120780 AATATTATTA
* * *
120790 GCCTTGAATC-GACATATTGGCACTTTTATCATTTTTAGGCCCAATGTCGTTGGCCTTGAATCAG
1 GCCTTGAATCAG-CATATTGGCACTTTTATCATCTTTAAGTCCAATGTCGTTGGCCTTGAATCAG
* * *
120854 CACATTGGCATTTTTCTCAT-TTTCAAGCCTAATGTCGCTG
65 CACATTGACATTCTTCTCATCTTT-AAGTCTAATGTCGCTG
* * *** * * * *
120894 ACCTTGAATCAACGCGTTGGCACTCTTCTCATCTTTAAGTCTAATGTCGTTGGCCTTGAATCAGT
1 GCCTTGAATCAGCATATTGGCACTTTTATCATCTTTAAGTCCAATGTCGTTGGCCTTGAATCAGC
* * *
120959 ACATT-AGCATTCTCCTCA-CTTTTAAGTCCAATATCGCTG
66 ACATTGA-CATTCTTCTCATC-TTTAAGTCTAATGTCGCTG
*
120998 GCCTTGAATCAGCATATTGGCACCTTTTATCATCTTTAAGTCCAATGTTGTTGGCCTTGAATCAG
1 GCCTTGAATCAGCATATTGGCA-CTTTTATCATCTTTAAGTCCAATGTCGTTGGCCTTGAATCAG
* * * * * *
121063 CATATTGACACTCTTATCATCATTAAGTCTAGTGTC-ATAG
65 CACATTGACATTCTTCTCATCTTTAAGTCTAATGTCGCT-G
*
121103 GCCTTGAATCTA-CATACTGGCAC
1 GCCTTGAATC-AGCATATTGGCAC
121126 GTTTCGATCA
Statistics
Matches: 185, Mismatches: 38, Indels: 18
0.77 0.16 0.07
Matches are distributed among these distances:
104 98 0.53
105 84 0.45
106 3 0.02
ACGTcount: A:0.24, C:0.24, G:0.17, T:0.36
Consensus pattern (104 bp):
GCCTTGAATCAGCATATTGGCACTTTTATCATCTTTAAGTCCAATGTCGTTGGCCTTGAATCAGC
ACATTGACATTCTTCTCATCTTTAAGTCTAATGTCGCTG
Found at i:124660 original size:19 final size:19
Alignment explanation
Indices: 124636--124685 Score: 91
Period size: 19 Copynumber: 2.6 Consensus size: 19
124626 AAACAGTAAA
124636 TGTATCGATACATAAGTGT
1 TGTATCGATACATAAGTGT
*
124655 TGTATCGATACATAAGTTT
1 TGTATCGATACATAAGTGT
124674 TGTATCGATACA
1 TGTATCGATACA
124686 ATGTATCGCT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 30 1.00
ACGTcount: A:0.32, C:0.12, G:0.18, T:0.38
Consensus pattern (19 bp):
TGTATCGATACATAAGTGT
Found at i:128699 original size:52 final size:52
Alignment explanation
Indices: 128610--128738 Score: 204
Period size: 52 Copynumber: 2.5 Consensus size: 52
128600 CGAAATATGA
*
128610 AAATTTACCTGCATGTATCGATACATGTAATAGTGTATCGATACATCTAGGC
1 AAATTTACCTGCATGTATCGATACATGTAATAATGTATCGATACATCTAGGC
* * * * *
128662 AAATTTGCCTGCATGTATCGATATATTTTATAATGTATCGATACATCTGGGC
1 AAATTTACCTGCATGTATCGATACATGTAATAATGTATCGATACATCTAGGC
128714 AAATTTACCTGCATGTATCGATACA
1 AAATTTACCTGCATGTATCGATACA
128739 AAGATCAGTA
Statistics
Matches: 69, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
52 69 1.00
ACGTcount: A:0.32, C:0.17, G:0.16, T:0.35
Consensus pattern (52 bp):
AAATTTACCTGCATGTATCGATACATGTAATAATGTATCGATACATCTAGGC
Found at i:128753 original size:52 final size:51
Alignment explanation
Indices: 128610--128758 Score: 183
Period size: 52 Copynumber: 2.9 Consensus size: 51
128600 CGAAATATGA
128610 AAATTTACCTGCATGTATCGATAC-ATGTAATAGTGTATCGATACATCTAGGC
1 AAATTTACCTGCATGTATCGATACAATG--ATAGTGTATCGATACATCTAGGC
* * * * * *
128662 AAATTTGCCTGCATGTATCGATATATTTTATAATGTATCGATACATCTGGGC
1 AAATTTACCTGCATGTATCGATACA-ATGATAGTGTATCGATACATCTAGGC
* *
128714 AAATTTACCTGCATGTATCGATACAAAGATCAGTATATCGATACA
1 AAATTTACCTGCATGTATCGATACAATGAT-AGTGTATCGATACA
128759 ATGTATCGAT
Statistics
Matches: 81, Mismatches: 13, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
51 2 0.02
52 78 0.96
54 1 0.01
ACGTcount: A:0.34, C:0.17, G:0.16, T:0.34
Consensus pattern (51 bp):
AAATTTACCTGCATGTATCGATACAATGATAGTGTATCGATACATCTAGGC
Found at i:128854 original size:13 final size:13
Alignment explanation
Indices: 128836--128860 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
128826 CAAAAAAATA
128836 TGTATCGATACAT
1 TGTATCGATACAT
128849 TGTATCGATACA
1 TGTATCGATACA
128861 ACACTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:128856 original size:33 final size:33
Alignment explanation
Indices: 128814--128880 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
128804 AGTAGCTTAA
128814 ATTGTATCGATACAAAAAAATATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
* ***
128847 ATTGTATCGATACAACACTTTATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
128880 A
1 A
128881 AATCGTTGAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.40, C:0.15, G:0.12, T:0.33
Consensus pattern (33 bp):
ATTGTATCGATACAAAAAAATATGTATCGATAC
Found at i:130745 original size:51 final size:51
Alignment explanation
Indices: 130689--130977 Score: 289
Period size: 51 Copynumber: 5.6 Consensus size: 51
130679 TTAAGTTTCT
* *
130689 CAATTTTTCATAATCGGGGGTACTCCAACCCCGGTTTTATTTCTAAAACAC
1 CAATTTTTCATAATCGGGGATACTCCAACCCCGATTTTATTTCTAAAACAC
* * * * ** *
130740 TAATTTTCCACAATCAGGGATACTCCAACTTCGATTTTATTT-TCGAAACAC
1 CAATTTTTCATAATCGGGGATACTCCAACCCCGATTTTATTTCT-AAAACAC
* * * * *
130791 CAATTTTCCACAACCGGGGATACTCCAACCCCGGTTTTATTT-TCAAAACAT
1 CAATTTTTCATAATCGGGGATACTCCAACCCCGATTTTATTTCT-AAAACAC
* * *
130842 CAA-TTTTCTATAATCGAGGATACTCCAACTCCGATTTTATTTCCAAAACAC
1 CAATTTTTC-ATAATCGGGGATACTCCAACCCCGATTTTATTTCTAAAACAC
* * * * *
130893 CAA-TTTTCTATAATCAGGGATGCTTCAACTCCGATTTTATTTCCAAGAACAC
1 CAATTTTTC-ATAATCGGGGATACTCCAACCCCGATTTTATTTCTAA-AACAC
* *
130945 AAATTTTTCATAATCGAGGATACTCCAACCCCG
1 CAATTTTTCATAATCGGGGATACTCCAACCCCG
130978 TTAATCATCA
Statistics
Matches: 198, Mismatches: 35, Indels: 9
0.82 0.14 0.04
Matches are distributed among these distances:
50 5 0.03
51 162 0.82
52 26 0.13
53 5 0.03
ACGTcount: A:0.31, C:0.26, G:0.11, T:0.33
Consensus pattern (51 bp):
CAATTTTTCATAATCGGGGATACTCCAACCCCGATTTTATTTCTAAAACAC
Found at i:130865 original size:102 final size:102
Alignment explanation
Indices: 130689--130973 Score: 344
Period size: 102 Copynumber: 2.8 Consensus size: 102
130679 TTAAGTTTCT
* * * * *
130689 CAATTTTTCATAATCGGGGGTACTCCAACCCCGGTTTTA-TTTCTAAAACACTAATTTTCCACAA
1 CAATTTTCCATAATCGGGGATACTCCAACCCCGGTTTTATTTTC-AAAACACAAATTTTCTATAA
* * *
130753 TC-AGGGATACTCCAACTTCGATTTTATTTTCGAAACAC
65 TCGA-GGATACTCCAACTCCGATTTTATTTCCAAAACAC
* *
130791 CAATTTTCCACAACCGGGGATACTCCAACCCCGGTTTTATTTTCAAAACATC-AATTTTCTATAA
1 CAATTTTCCATAATCGGGGATACTCCAACCCCGGTTTTATTTTCAAAACA-CAAATTTTCTATAA
130855 TCGAGGATACTCCAACTCCGATTTTATTTCCAAAACAC
65 TCGAGGATACTCCAACTCCGATTTTATTTCCAAAACAC
* * * * * * *
130893 CAATTTTCTATAATCAGGGATGCTTCAACTCCGATTTTATTTCCAAGAACACAAATTTT-TCATA
1 CAATTTTCCATAATCGGGGATACTCCAACCCCGGTTTTATTTTCAA-AACACAAATTTTCT-ATA
130957 ATCGAGGATACTCCAAC
64 ATCGAGGATACTCCAAC
130974 CCCGTTAATC
Statistics
Matches: 159, Mismatches: 18, Indels: 11
0.85 0.10 0.06
Matches are distributed among these distances:
102 123 0.77
103 36 0.23
ACGTcount: A:0.31, C:0.25, G:0.11, T:0.33
Consensus pattern (102 bp):
CAATTTTCCATAATCGGGGATACTCCAACCCCGGTTTTATTTTCAAAACACAAATTTTCTATAAT
CGAGGATACTCCAACTCCGATTTTATTTCCAAAACAC
Found at i:131016 original size:26 final size:27
Alignment explanation
Indices: 130962--131028 Score: 82
Period size: 27 Copynumber: 2.5 Consensus size: 27
130952 TCATAATCGA
130962 GGATACTCCAACCCCGTTAATCATCA-G
1 GGATACTCCAA-CCCGTTAATCATCAGG
* ** *
130989 GGATACTCCAACCCGTTATTTTTGAGG
1 GGATACTCCAACCCGTTAATCATCAGG
131016 GGATACTCCAACC
1 GGATACTCCAACC
131029 TCGGCTTTAT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
26 10 0.29
27 25 0.71
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.25
Consensus pattern (27 bp):
GGATACTCCAACCCGTTAATCATCAGG
Found at i:131118 original size:79 final size:79
Alignment explanation
Indices: 130988--131189 Score: 316
Period size: 79 Copynumber: 2.6 Consensus size: 79
130978 TTAATCATCA
* *
130988 GGGATACTCCAA-CCCGTTATTTTTGAGGGGATACTCCAACCTCGGCTTTATTCCTAAAATATTG
1 GGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGCTTTATTCCTAAAATATTG
*
131052 ATTTCTCATAATCG
66 ATTTCTCACAATCG
* * * * *
131066 GGGATACTCCAACCCCGTTATTTCCGAGGGGATATTTCAACCCCGGTTTTATTCTTAAAATATTG
1 GGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGCTTTATTCCTAAAATATTG
131131 ATTTCTCACAATCG
66 ATTTCTCACAATCG
*
131145 GGGATACTCCAACCCCGTTATTTTCGCGGGGATACTCCAACCCCG
1 GGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCG
131190 TTATTTTTGA
Statistics
Matches: 111, Mismatches: 12, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
78 12 0.11
79 99 0.89
ACGTcount: A:0.24, C:0.26, G:0.18, T:0.32
Consensus pattern (79 bp):
GGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGCTTTATTCCTAAAATATTG
ATTTCTCACAATCG
Found at i:131183 original size:28 final size:28
Alignment explanation
Indices: 131143--131215 Score: 128
Period size: 28 Copynumber: 2.6 Consensus size: 28
131133 TTCTCACAAT
131143 CGGGGATACTCCAACCCCGTTATTTTCG
1 CGGGGATACTCCAACCCCGTTATTTTCG
*
131171 CGGGGATACTCCAACCCCGTTATTTTTG
1 CGGGGATACTCCAACCCCGTTATTTTCG
*
131199 AGGGGATACTCCAACCC
1 CGGGGATACTCCAACCC
131216 TGATTTTATT
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 43 1.00
ACGTcount: A:0.21, C:0.32, G:0.22, T:0.26
Consensus pattern (28 bp):
CGGGGATACTCCAACCCCGTTATTTTCG
Found at i:143678 original size:6 final size:6
Alignment explanation
Indices: 143667--143702 Score: 51
Period size: 6 Copynumber: 6.5 Consensus size: 6
143657 CTTTTTCAAA
143667 AAAAAC AAAAAC AAAAA- AAAAAC -AAAA- AAAAAC AAA
1 AAAAAC AAAAAC AAAAAC AAAAAC AAAAAC AAAAAC AAA
143703 GAAAAAAGAG
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
5 13 0.48
6 14 0.52
ACGTcount: A:0.89, C:0.11, G:0.00, T:0.00
Consensus pattern (6 bp):
AAAAAC
Found at i:143686 original size:17 final size:16
Alignment explanation
Indices: 143664--143698 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 16
143654 ATTCTTTTTC
143664 AAAAAAAACAAAAACAA
1 AAAAAAAACAAAAA-AA
143681 AAAAAAAACAAAAAAA
1 AAAAAAAACAAAAAAA
143697 AA
1 AA
143699 CAAAGAAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 4 0.22
17 14 0.78
ACGTcount: A:0.91, C:0.09, G:0.00, T:0.00
Consensus pattern (16 bp):
AAAAAAAACAAAAAAA
Found at i:143687 original size:11 final size:11
Alignment explanation
Indices: 143667--143709 Score: 61
Period size: 11 Copynumber: 3.9 Consensus size: 11
143657 CTTTTTCAAA
143667 AAAAACAAAAAC
1 AAAAA-AAAAAC
143679 AAAAAAAAAAC
1 AAAAAAAAAAC
143690 -AAAAAAAAAC
1 AAAAAAAAAAC
*
143700 AAAGAAAAAA
1 AAAAAAAAAA
143710 GAGAGAAAAG
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
10 10 0.34
11 14 0.48
12 5 0.17
ACGTcount: A:0.88, C:0.09, G:0.02, T:0.00
Consensus pattern (11 bp):
AAAAAAAAAAC
Found at i:143718 original size:21 final size:21
Alignment explanation
Indices: 143664--143709 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
143654 ATTCTTTTTC
* *
143664 AAAAA-AAACAAAAACAAAAA
1 AAAAACAAAAAAAAACAAAGA
143684 AAAAACAAAAAAAAACAAAGA
1 AAAAACAAAAAAAAACAAAGA
143705 AAAAA
1 AAAAA
143710 GAGAGAAAAG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 5 0.22
21 18 0.78
ACGTcount: A:0.89, C:0.09, G:0.02, T:0.00
Consensus pattern (21 bp):
AAAAACAAAAAAAAACAAAGA
Found at i:144788 original size:61 final size:61
Alignment explanation
Indices: 144693--145354 Score: 681
Period size: 55 Copynumber: 11.4 Consensus size: 61
144683 TCCTTTCACT
144693 TTTCAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACC
1 TTTCAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACC
* * *
144754 TTTCAGTCCTCAAAGAGTAGGACGCCTTTTCCTTTCAAAGCCCCCACAAGTTGGTGGCACC
1 TTTCAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACC
* * *
144815 TTTTAGTCCTCAAAGAACAGGA---C---GCCTTTCAAAGCCCACACAAGTTGGTGGCACC
1 TTTCAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACC
*
144870 TTTCAGTCCTCAAAGAGCAGGATG------CCTTTCAAAGCCCACACAAGTTGGTGGCA-T
1 TTTCAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACC
* * **
144924 TTTCTAGTCCTCAAAGAGCAGGACGCC---T--TTT-AAAGCCCACACACGTTGGTGGCATT
1 TTTC-AGTCCTCAAAGAGCAGGATGCCTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACC
* * *
144980 TTTCAGTCCTCCAAGAGCAAGATGCC---T--TTT-AAAGCCCACACAAGTTGGTGGCA-T
1 TTTCAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACC
* * * * **
145034 TTTCCAGTCCTCAAAGAGCAGGATGCTTTTTCTTTTCAAAGCTCACACAAGTTGATGGCATT
1 TTT-CAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACC
* * * * **
145096 TTTCAGTCTTCAAAAAGCAGGACGCCTTTTCTTTTCAAAGCCCACATGAGTTGGTGGCACC
1 TTTCAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACC
* *
145157 TTTTAGTCCTCAAAGAGCAGGATGCC---T--TTT-AAAGCCCACACGAGTTGGTGGCACC
1 TTTCAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACC
* * * * * * * * *
145212 CTCCAATCCTCAAAAAGCAGGATGCCTTTTTCTTTTAAAGCCCACATAAGCTGGCGGCACC
1 TTTCAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACC
* * * *
145273 -TTCAGTCCTCAGAGAGCAGGATGCCTTTTCCTTTTAAAGCCCACAGAAGTTGGTGGC-GC
1 TTTCAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACC
*
145332 TTCCCAGTCCTCAAAGAGCAGGA
1 TT-TCAGTCCTCAAAGAGCAGGA
145355 CGCTCCCTCA
Statistics
Matches: 521, Mismatches: 57, Indels: 46
0.83 0.09 0.07
Matches are distributed among these distances:
54 8 0.02
55 230 0.44
56 11 0.02
58 4 0.01
59 1 0.00
60 56 0.11
61 207 0.40
62 4 0.01
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (61 bp):
TTTCAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACC
Done.