Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold32
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 5587194
ACGTcount: A:0.26, C:0.15, G:0.16, T:0.26
Warning! 895791 characters in sequence are not A, C, G, or T
File 19 of 33
Found at i:2838637 original size:22 final size:22
Alignment explanation
Indices: 2838588--2838644 Score: 69
Period size: 22 Copynumber: 2.5 Consensus size: 22
2838578 GAAGAAGTCA
* *
2838588 AGAGAAAAAGGAAGAAGAAAAG
1 AGAGAAAAAGAAAGAAAAAAAG
*
2838610 AAAGAAAAAGAAAGAAAAAAAG
1 AGAGAAAAAGAAAGAAAAAAAG
*
2838632 GGAGAAAATAGAA
1 AGAGAAAA-AGAA
2838645 CAAATAAGCC
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
22 25 0.86
23 4 0.14
ACGTcount: A:0.72, C:0.00, G:0.26, T:0.02
Consensus pattern (22 bp):
AGAGAAAAAGAAAGAAAAAAAG
Found at i:2839746 original size:139 final size:142
Alignment explanation
Indices: 2839602--2839914 Score: 411
Period size: 142 Copynumber: 2.2 Consensus size: 142
2839592 GGTATCCGTG
* * * *
2839602 GGGGTAT-GAAAATTTTCAAAACTTTTCGTATTTTTTTAGTTCTCCATTAAGGT-CGAAATGTA-
1 GGGGTATAG-AAATTTTCAAAACTTTTCGTATCTTTTCAGTTCTCCATTAAGCTACGAAATGAAT
*
2839664 TTTTTGGAAATTA-AAAATTAAATAAAAATTATTATCCTAATTTTTCAAGATTTCTAATATTCCC
65 TTTTTGGAAATTAGAAAATTAAATAAAAATTATTATCCTAAATTTTCAAGATTTCTAATATTCCC
2839728 ATGGTCTTCGGTA
130 ATGGTCTTCGGTA
* * *
2839741 GGGGTATAGAAATTTTCAAAAGTTTTCGTATCTTTTCGGTTCTCTATTAAGCTACGAAATGAATT
1 GGGGTATAGAAATTTTCAAAACTTTTCGTATCTTTTCAGTTCTCCATTAAGCTACGAAATGAATT
** * ***
2839806 TTTTGGAAATTAGAAAATTAAATAAAAATTATTATTTTAAATTTTCAAGATTTCTAATAATCATG
66 TTTTGGAAATTAGAAAATTAAATAAAAATTATTATCCTAAATTTTCAAGATTTCTAATATTCCCA
* *
2839871 TGGTTCTT-TGTG
131 TGG-TCTTCGGTA
* *
2839883 GGGGTATAGAAATTTTTAAAACTTTTTGTATC
1 GGGGTATAGAAATTTTCAAAACTTTTCGTATC
2839915 CTATGGTTTT
Statistics
Matches: 150, Mismatches: 19, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
139 45 0.30
140 9 0.06
141 13 0.09
142 79 0.53
143 4 0.03
ACGTcount: A:0.33, C:0.10, G:0.14, T:0.43
Consensus pattern (142 bp):
GGGGTATAGAAATTTTCAAAACTTTTCGTATCTTTTCAGTTCTCCATTAAGCTACGAAATGAATT
TTTTGGAAATTAGAAAATTAAATAAAAATTATTATCCTAAATTTTCAAGATTTCTAATATTCCCA
TGGTCTTCGGTA
Found at i:2849730 original size:42 final size:42
Alignment explanation
Indices: 2849664--2849782 Score: 184
Period size: 42 Copynumber: 2.8 Consensus size: 42
2849654 TAGCCCTCAA
* * *
2849664 AGAGAAAGAAGAGAGAGGAAGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
*
2849706 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
* *
2849748 AGAGATAATAGAGAGAGGAGGGATGACAGGAGGAG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAG
2849783 GAGAGAAGAA
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 70 1.00
ACGTcount: A:0.44, C:0.03, G:0.45, T:0.08
Consensus pattern (42 bp):
AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
Found at i:2849749 original size:24 final size:24
Alignment explanation
Indices: 2849673--2849758 Score: 76
Period size: 24 Copynumber: 3.8 Consensus size: 24
2849663 AAGAGAAAGA
* *
2849673 AGAGAGAGGAAGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
*
2849697 AGAGACAGGA--GA-GAT---AGT
1 AGAGACAGGAGGGATGATAGGAGG
*
2849715 AGAGATAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
* *
2849739 AGAGACAGGAGAGATAATAG
1 AGAGACAGGAGGGATGATAG
2849759 AGAGAGGAGG
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 11 0.22
20 2 0.04
21 6 0.12
22 2 0.04
24 28 0.57
ACGTcount: A:0.43, C:0.02, G:0.44, T:0.10
Consensus pattern (24 bp):
AGAGACAGGAGGGATGATAGGAGG
Found at i:2853443 original size:87 final size:87
Alignment explanation
Indices: 2853346--2853580 Score: 231
Period size: 87 Copynumber: 2.7 Consensus size: 87
2853336 CAACTCAATG
* * * **
2853346 GCACCTTTCTCAAAGTCCACAACTTAGTGGCACCTTTTTCAAAGTCTACGACTCAATGGCATTCT
1 GCACCCTTCTCAAAGTCCAC-ACTTAGTGGCACCTTTTTCAAAGTCCATGACTCAATGGCACACT
* *
2853411 TTTCAAAGTCTATGACATAGTGA
65 TCTCAAAGTCCATGACATAGTGA
* * * * * *
2853434 -CATCCTTCTCAAAGTCCATCACTCAGTAGCACCTTTCTT-AAAGTCCATGACTCAGTGCCCCAC
1 GCACCCTTCTCAAAGTCCA-CACTTAGTGGCACCTTT-TTCAAAGTCCATGACTCAATGGCACAC
** * *
2853497 TTCTCGCAGTCCATGACTTAGTTA
64 TTCTCAAAGTCCATGACATAGTGA
* ** *
2853521 GCACCCTTCTCAAAGTTCAGGGCTTAGTGGCACCCTTTTCAAAGTCCATGACTCAATGGC
1 GCACCCTTCTCAAAGTCCA-CACTTAGTGGCACCTTTTTCAAAGTCCATGACTCAATGGC
2853581 CCACGACTTA
Statistics
Matches: 116, Mismatches: 27, Indels: 8
0.77 0.18 0.05
Matches are distributed among these distances:
87 67 0.58
88 49 0.42
ACGTcount: A:0.26, C:0.29, G:0.15, T:0.30
Consensus pattern (87 bp):
GCACCCTTCTCAAAGTCCACACTTAGTGGCACCTTTTTCAAAGTCCATGACTCAATGGCACACTT
CTCAAAGTCCATGACATAGTGA
Found at i:2853580 original size:29 final size:29
Alignment explanation
Indices: 2853286--2853580 Score: 175
Period size: 29 Copynumber: 10.1 Consensus size: 29
2853276 CCCTAGTGGA
* **
2853286 GGCACTCTTTTGCAAAGTCCACAACTCAGT
1 GGCACCCTTTT-CAAAGTCCATGACTCAGT
* * * ** *
2853316 GTCACCTTTTTCAAGGTCCACAACTCAAT
1 GGCACCCTTTTCAAAGTCCATGACTCAGT
** *
2853345 GGCA-CCTTTCTCAAAGTCCACAACTTAGT
1 GGCACCCTTT-TCAAAGTCCATGACTCAGT
* * * *
2853374 GGCACCTTTTTCAAAGTCTACGACTCAAT
1 GGCACCCTTTTCAAAGTCCATGACTCAGT
** *
2853403 GGCATTCTTTTCAAAGTCTATGACAT-AGT
1 GGCACCCTTTTCAAAGTCCATGAC-TCAGT
* * * *
2853432 GACATCCTTCTCAAAGTCCATCACTCAGT
1 GGCACCCTTTTCAAAGTCCATGACTCAGT
* *
2853461 AGCA-CCTTTCTTAAAGTCCATGACTCAGT
1 GGCACCCTTT-TCAAAGTCCATGACTCAGT
* * ** *
2853490 -GCCCCACTTCTCGCAGTCCATGACTTAGTT
1 GGCACC-CTTTTCAAAGTCCATGACTCAG-T
* * * * * *
2853520 AGCACCCTTCTCAAAGTTCAGGGCTTAGT
1 GGCACCCTTTTCAAAGTCCATGACTCAGT
*
2853549 GGCACCCTTTTCAAAGTCCATGACTCAAT
1 GGCACCCTTTTCAAAGTCCATGACTCAGT
2853578 GGC
1 GGC
2853581 CCACGACTTA
Statistics
Matches: 207, Mismatches: 49, Indels: 19
0.75 0.18 0.07
Matches are distributed among these distances:
28 11 0.05
29 158 0.76
30 34 0.16
31 4 0.02
ACGTcount: A:0.26, C:0.29, G:0.15, T:0.29
Consensus pattern (29 bp):
GGCACCCTTTTCAAAGTCCATGACTCAGT
Found at i:2853629 original size:29 final size:29
Alignment explanation
Indices: 2853590--2853724 Score: 152
Period size: 29 Copynumber: 4.8 Consensus size: 29
2853580 CCCACGACTT
*
2853590 AGTGGAACCCTTCTCAAAGTCCATAACTC
1 AGTGGCACCCTTCTCAAAGTCCATAACTC
* * *
2853619 AATGACACCCTTCTCAAAGTCC---ACTT
1 AGTGGCACCCTTCTCAAAGTCCATAACTC
* *
2853645 AGTGGCA-TCTTCTCAAAGTCCATAACTT
1 AGTGGCACCCTTCTCAAAGTCCATAACTC
* * *
2853673 AGTGGCACCCTTTTCAATGTCCATGACTC
1 AGTGGCACCCTTCTCAAAGTCCATAACTC
*
2853702 AGTGGCACCCTTTTCAAAGTCCA
1 AGTGGCACCCTTCTCAAAGTCCA
2853725 CAAAGCTGGT
Statistics
Matches: 89, Mismatches: 13, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
25 13 0.15
26 8 0.09
28 11 0.12
29 57 0.64
ACGTcount: A:0.27, C:0.30, G:0.14, T:0.28
Consensus pattern (29 bp):
AGTGGCACCCTTCTCAAAGTCCATAACTC
Found at i:2853827 original size:32 final size:32
Alignment explanation
Indices: 2853703--2853915 Score: 173
Period size: 32 Copynumber: 7.0 Consensus size: 32
2853693 CCATGACTCA
* *
2853703 GTGGCACCCTTT-TCAAAGTCCACA-AAGCTG
1 GTGGCATCCTTTCTCAAAGTCCGCACAAGCTG
*
2853733 GTGGCATCCTTTCTCAAAG-CCTGCACGAGCTG
1 GTGGCATCCTTTCTCAAAGTCC-GCACAAGCTG
*** * * *
2853765 GCAACA-CC---C-AAAAGCCCACACAAGCTG
1 GTGGCATCCTTTCTCAAAGTCCGCACAAGCTG
** *
2853792 GTGGCATCCTTTCTCAAAGTTTGCATAAGCTG
1 GTGGCATCCTTTCTCAAAGTCCGCACAAGCTG
*
2853824 GTGGCATCCTTTCTCAAAGTCCGCACGAGCTG
1 GTGGCATCCTTTCTCAAAGTCCGCACAAGCTG
* * *
2853856 GTGGCA--C---CTAAAAGCCCACACAAGCTG
1 GTGGCATCCTTTCTCAAAGTCCGCACAAGCTG
*
2853883 GTGGCATCCTTTCTCAAAGTCCACACAAGCTG
1 GTGGCATCCTTTCTCAAAGTCCGCACAAGCTG
2853915 G
1 G
2853916 CGAAACCCAA
Statistics
Matches: 141, Mismatches: 28, Indels: 26
0.72 0.14 0.13
Matches are distributed among these distances:
27 37 0.26
28 5 0.04
29 1 0.01
30 14 0.10
31 11 0.08
32 73 0.52
ACGTcount: A:0.26, C:0.31, G:0.22, T:0.22
Consensus pattern (32 bp):
GTGGCATCCTTTCTCAAAGTCCGCACAAGCTG
Found at i:2853881 original size:27 final size:27
Alignment explanation
Indices: 2853851--2853938 Score: 77
Period size: 27 Copynumber: 3.1 Consensus size: 27
2853841 AGTCCGCACG
2853851 AGCTGGTGGCACCTAAAAGCCCACACA
1 AGCTGGTGGCACCTAAAAGCCCACACA
* *
2853878 AGCTGGTGGCATCCTTTCTCAAAGTCCACACA
1 AGCTGGTGGCA--C---CTAAAAGCCCACACA
* ** *
2853910 AGCTGGCGAAACCCAAAAGCCCACACA
1 AGCTGGTGGCACCTAAAAGCCCACACA
2853937 AG
1 AG
2853939 TCGATGGCAT
Statistics
Matches: 48, Mismatches: 8, Indels: 10
0.73 0.12 0.15
Matches are distributed among these distances:
27 25 0.52
29 1 0.02
30 1 0.02
32 21 0.44
ACGTcount: A:0.33, C:0.33, G:0.20, T:0.14
Consensus pattern (27 bp):
AGCTGGTGGCACCTAAAAGCCCACACA
Found at i:2853881 original size:59 final size:59
Alignment explanation
Indices: 2853818--2853938 Score: 188
Period size: 59 Copynumber: 2.1 Consensus size: 59
2853808 AAGTTTGCAT
* * * ** *
2853818 AAGCTGGTGGCATCCTTTCTCAAAGTCCGCACGAGCTGGTGGCACCTAAAAGCCCACAC
1 AAGCTGGTGGCATCCTTTCTCAAAGTCCACACAAGCTGGCGAAACCCAAAAGCCCACAC
2853877 AAGCTGGTGGCATCCTTTCTCAAAGTCCACACAAGCTGGCGAAACCCAAAAGCCCACAC
1 AAGCTGGTGGCATCCTTTCTCAAAGTCCACACAAGCTGGCGAAACCCAAAAGCCCACAC
2853936 AAG
1 AAG
2853939 TCGATGGCAT
Statistics
Matches: 56, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
59 56 1.00
ACGTcount: A:0.30, C:0.32, G:0.21, T:0.17
Consensus pattern (59 bp):
AAGCTGGTGGCATCCTTTCTCAAAGTCCACACAAGCTGGCGAAACCCAAAAGCCCACAC
Found at i:2853913 original size:91 final size:90
Alignment explanation
Indices: 2853703--2853915 Score: 313
Period size: 91 Copynumber: 2.4 Consensus size: 90
2853693 CCATGACTCA
*
2853703 GTGGCACCCTTT-TCAAAGTCCACAAAGCTGGTGGCATCCTTTCTCAAAGCCTGCACGAGCTGGC
1 GTGGCATCCTTTCTCAAAGTCCACAAAGCTGGTGGCATCCTTTCTCAAAGCCTGCACGAGCTGGC
2853767 AACACCCAAAAGCCCACACAAGCTG
66 AACACCCAAAAGCCCACACAAGCTG
***
2853792 GTGGCATCCTTTCTCAAAGTTTGCATAAGCTGGTGGCATCCTTTCTCAAAGTCC-GCACGAGCTG
1 GTGGCATCCTTTCTCAAAGTCCACA-AAGCTGGTGGCATCCTTTCTCAAAG-CCTGCACGAGCTG
*** *
2853856 GTGGCACCTAAAAGCCCACACAAGCTG
64 GCAACACCCAAAAGCCCACACAAGCTG
2853883 GTGGCATCCTTTCTCAAAGTCCACACAAGCTGG
1 GTGGCATCCTTTCTCAAAGTCCACA-AAGCTGG
2853916 CGAAACCCAA
Statistics
Matches: 109, Mismatches: 12, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
89 11 0.10
90 9 0.08
91 87 0.80
92 2 0.02
ACGTcount: A:0.26, C:0.31, G:0.22, T:0.22
Consensus pattern (90 bp):
GTGGCATCCTTTCTCAAAGTCCACAAAGCTGGTGGCATCCTTTCTCAAAGCCTGCACGAGCTGGC
AACACCCAAAAGCCCACACAAGCTG
Found at i:2854230 original size:52 final size:51
Alignment explanation
Indices: 2854099--2854345 Score: 187
Period size: 52 Copynumber: 4.7 Consensus size: 51
2854089 TCTCCCAAGC
* * * * * *
2854099 CCAATGTCACTAGCCTTTAATCAGCACATTGGCACCCTTCT-TTC-TCAAG
1 CCAATGTCATTGGCCTTGAATCAGCACATTGGCACCCTTATCATCTTTAAG
* * *
2854148 CCTAATGTCATTGGTCATGAATCAACACATTGGCACCCTTATCATCTTTAAG
1 CC-AATGTCATTGGCCTTGAATCAGCACATTGGCACCCTTATCATCTTTAAG
* * * *
2854200 TCCAATGTCACTGGCCTTGAATTAGTACATTGGCA--CTTGTCAAACCTTCTTTCTCAAG
1 -CCAATGTCATTGGCCTTGAATCAGCACATTGGCACCCTTATC--A---TC-TT-T-AAG
* * * *
2854258 CCTAATGTTATTGGCCATGAATCAACACATTGGCACCTTTATCATCTTTAAG
1 CC-AATGTCATTGGCCTTGAATCAGCACATTGGCACCCTTATCATCTTTAAG
* *
2854310 TCCAATGTCATTTGCCTTGAATTAGCACATTGGCAC
1 -CCAATGTCATTGGCCTTGAATCAGCACATTGGCAC
2854346 TTGTCAAACC
Statistics
Matches: 153, Mismatches: 29, Indels: 29
0.73 0.14 0.14
Matches are distributed among these distances:
49 2 0.01
50 37 0.24
51 2 0.01
52 62 0.41
53 5 0.03
54 2 0.01
55 4 0.03
56 2 0.01
57 3 0.02
58 30 0.20
60 4 0.03
ACGTcount: A:0.26, C:0.26, G:0.14, T:0.33
Consensus pattern (51 bp):
CCAATGTCATTGGCCTTGAATCAGCACATTGGCACCCTTATCATCTTTAAG
Found at i:2854279 original size:58 final size:58
Alignment explanation
Indices: 2854203--2854373 Score: 178
Period size: 58 Copynumber: 3.1 Consensus size: 58
2854193 CTTTAAGTCC
* *
2854203 AATGTCACTGGCCTTGAATTAGTACATTGGCACTTGTCAAACCTTCTTTCTCAAGCCT
1 AATGTCATTGGCCTTGAATTAGCACATTGGCACTTGTCAAACCTTCTTTCTCAAGCCT
* * * * * *
2854261 AATGTTATTGGCCATGAATCAACACATTGGCACCTT-T---ATCATC-TT-T-AAGTCC-
1 AATGTCATTGGCCTTGAATTAGCACATTGGCA-CTTGTCAAACCTTCTTTCTCAAG-CCT
* *
2854313 AATGTCATTTGCCTTGAATTAGCACATTGGCACTTGTCAAACCTTTTTTCTCAAGCCT
1 AATGTCATTGGCCTTGAATTAGCACATTGGCACTTGTCAAACCTTCTTTCTCAAGCCT
2854371 AAT
1 AAT
2854374 TTTACTATCA
Statistics
Matches: 87, Mismatches: 16, Indels: 20
0.71 0.13 0.16
Matches are distributed among these distances:
51 3 0.03
52 31 0.36
53 3 0.03
54 2 0.02
55 7 0.08
56 2 0.02
57 3 0.03
58 33 0.38
59 3 0.03
ACGTcount: A:0.26, C:0.24, G:0.14, T:0.36
Consensus pattern (58 bp):
AATGTCATTGGCCTTGAATTAGCACATTGGCACTTGTCAAACCTTCTTTCTCAAGCCT
Found at i:2854327 original size:110 final size:110
Alignment explanation
Indices: 2854134--2854417 Score: 462
Period size: 110 Copynumber: 2.6 Consensus size: 110
2854124 ACATTGGCAC
*
2854134 CCTTCTTTCTCAAGCCTAATGTCATTGGTCATGAATCAACACATTGGCACCCTTATCATCTTTAA
1 CCTTCTTTCTCAAGCCTAATGTTATTGGTCATGAATCAACACATTGGCACCCTTATCATCTTTAA
*
2854199 GTCCAATGTCACTGGCCTTGAATTAGTACATTGGCACTTGTCAAA
66 GTCCAATGTCACTGGCCTTGAATTAGCACATTGGCACTTGTCAAA
* *
2854244 CCTTCTTTCTCAAGCCTAATGTTATTGGCCATGAATCAACACATTGGCACCTTTATCATCTTTAA
1 CCTTCTTTCTCAAGCCTAATGTTATTGGTCATGAATCAACACATTGGCACCCTTATCATCTTTAA
* *
2854309 GTCCAATGTCATTTGCCTTGAATTAGCACATTGGCACTTGTCAAA
66 GTCCAATGTCACTGGCCTTGAATTAGCACATTGGCACTTGTCAAA
* * * * *
2854354 CCTTTTTTCTCAAGCCTAATTTTACT-ATCATGAATCAGCACATTGGCACCCTTATCATCTTTAA
1 CCTTCTTTCTCAAGCCTAATGTTATTGGTCATGAATCAACACATTGGCACCCTTATCATCTTTAA
2854418 ATCTAATATT
Statistics
Matches: 161, Mismatches: 13, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
109 34 0.21
110 127 0.79
ACGTcount: A:0.26, C:0.25, G:0.13, T:0.36
Consensus pattern (110 bp):
CCTTCTTTCTCAAGCCTAATGTTATTGGTCATGAATCAACACATTGGCACCCTTATCATCTTTAA
GTCCAATGTCACTGGCCTTGAATTAGCACATTGGCACTTGTCAAA
Found at i:2860196 original size:42 final size:42
Alignment explanation
Indices: 2860149--2860270 Score: 190
Period size: 42 Copynumber: 2.9 Consensus size: 42
2860139 TCCATCTTCT
* *
2860149 TCTCTCCTCCTGTCATCCCTCCTCTCTCTATTATCTCTCCTG
1 TCTCTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTG
*
2860191 TCTCTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTG
1 TCTCTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTG
* * *
2860233 TCACTCCTCCTATCATCCCTCCTCTCTCTTCTTTCTCT
1 TCTCTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
2860271 TTGAGGGCTA
Statistics
Matches: 73, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 73 1.00
ACGTcount: A:0.09, C:0.46, G:0.02, T:0.43
Consensus pattern (42 bp):
TCTCTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTG
Found at i:2865565 original size:30 final size:31
Alignment explanation
Indices: 2865531--2865593 Score: 85
Period size: 31 Copynumber: 2.1 Consensus size: 31
2865521 CCTTACAACA
2865531 CTATC-TTTCA-AGGCTAAAATAGAAACCTCT
1 CTATCTTTTCACAGGCTAAAATAG-AACCTCT
* *
2865561 CTATCTTTTCACGGGCTAAGATAGAACCTCT
1 CTATCTTTTCACAGGCTAAAATAGAACCTCT
2865592 CT
1 CT
2865594 CCCTATCTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
30 5 0.17
31 14 0.48
32 10 0.34
ACGTcount: A:0.30, C:0.25, G:0.13, T:0.32
Consensus pattern (31 bp):
CTATCTTTTCACAGGCTAAAATAGAACCTCT
Found at i:2869449 original size:21 final size:21
Alignment explanation
Indices: 2869424--2869478 Score: 65
Period size: 21 Copynumber: 2.6 Consensus size: 21
2869414 ATTTTGTAAC
*
2869424 TCATTTCTTTTCTCCTCTAAT
1 TCATTTATTTTCTCCTCTAAT
**
2869445 TCATTTATTTTCTTTTCTAAT
1 TCATTTATTTTCTCCTCTAAT
* *
2869466 TCACTTAATTTCT
1 TCATTTATTTTCT
2869479 TTTCAAGAAT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.18, C:0.22, G:0.00, T:0.60
Consensus pattern (21 bp):
TCATTTATTTTCTCCTCTAAT
Found at i:2869479 original size:21 final size:21
Alignment explanation
Indices: 2869439--2869482 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
2869429 TCTTTTCTCC
* *
2869439 TCTAATTCATTTATTTTCTTT
1 TCTAATTCACTTAATTTCTTT
2869460 TCTAATTCACTTAATTTCTTT
1 TCTAATTCACTTAATTTCTTT
2869481 TC
1 TC
2869483 AAGAATATTA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.20, C:0.18, G:0.00, T:0.61
Consensus pattern (21 bp):
TCTAATTCACTTAATTTCTTT
Found at i:2876304 original size:8 final size:8
Alignment explanation
Indices: 2876286--2876320 Score: 63
Period size: 8 Copynumber: 4.5 Consensus size: 8
2876276 TTCCATCTTC
2876286 AAAAT-AA
1 AAAATAAA
2876293 AAAATAAA
1 AAAATAAA
2876301 AAAATAAA
1 AAAATAAA
2876309 AAAATAAA
1 AAAATAAA
2876317 AAAA
1 AAAA
2876321 GGAAAAAAAG
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 5 0.19
8 22 0.81
ACGTcount: A:0.89, C:0.00, G:0.00, T:0.11
Consensus pattern (8 bp):
AAAATAAA
Found at i:2876326 original size:16 final size:16
Alignment explanation
Indices: 2876291--2876329 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
2876281 TCTTCAAAAT
*
2876291 AAAAAATAAAAAAATA
1 AAAAAATAAAAAAAGA
2876307 AAAAAATAAAAAAAGGA
1 AAAAAATAAAAAAA-GA
2876324 AAAAAA
1 AAAAAA
2876330 GATAGTTATC
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
16 14 0.67
17 7 0.33
ACGTcount: A:0.87, C:0.00, G:0.05, T:0.08
Consensus pattern (16 bp):
AAAAAATAAAAAAAGA
Found at i:2878525 original size:31 final size:31
Alignment explanation
Indices: 2878487--2878549 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
2878477 GAGCATTGCC
2878487 TTTGTTTTATAAAAATATTAGAATTTTTAAT
1 TTTGTTTTATAAAAATATTAGAATTTTTAAT
2878518 TTTGTTTTATAAAAATATTAGAATTTTTAAT
1 TTTGTTTTATAAAAATATTAGAATTTTTAAT
2878549 T
1 T
2878550 AAGAGAAAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.38, C:0.00, G:0.06, T:0.56
Consensus pattern (31 bp):
TTTGTTTTATAAAAATATTAGAATTTTTAAT
Found at i:2879042 original size:55 final size:54
Alignment explanation
Indices: 2878975--2879079 Score: 131
Period size: 55 Copynumber: 1.9 Consensus size: 54
2878965 CTTCGGCATA
** *
2878975 GACCCAGTGATAACCTTGGACTCGATTCT-AAAATAATATAAAAATGGCCCTAGGG
1 GACCCAGTGATAACCAAGGACTCGATTCTGAAAA-AATACAAAAAT-GCCCTAGGG
* * *
2879030 GACCCGGTGATAACCAAGGACTCGGTTTTGAAAAAATACAAAAATGCCCT
1 GACCCAGTGATAACCAAGGACTCGATTCTGAAAAAATACAAAAATGCCCT
2879080 TAGTGGATAC
Statistics
Matches: 43, Mismatches: 6, Indels: 3
0.83 0.12 0.06
Matches are distributed among these distances:
54 5 0.12
55 34 0.79
56 4 0.09
ACGTcount: A:0.37, C:0.21, G:0.20, T:0.22
Consensus pattern (54 bp):
GACCCAGTGATAACCAAGGACTCGATTCTGAAAAAATACAAAAATGCCCTAGGG
Found at i:2879282 original size:154 final size:154
Alignment explanation
Indices: 2879060--2880040 Score: 904
Period size: 154 Copynumber: 6.4 Consensus size: 154
2879050 CTCGGTTTTG
* * *
2879060 AAAAAATACAAAAATGCCCTTAGTGGATACTTTCTACGTAGAAGTACCCGATACCCTTAAAGGAC
1 AAAAAATACAAAAATGCCCCTAGGGGATACTTTCTACCTAGAAGTACCCGATACCCTTAAAGGAC
* * *
2879125 TAAAAAAGGATGTGGATGGCGTGAAGCTATCCTAAATGCCCACCTTCGGCATAAAAGCAGACCCA
66 TAAAAAAGGATGTGGATGGCATGAACCTATCCTAAATGCCCACCTTCGGCATAAAAGCAGACCCG
* * *
2879190 ATGATAACTTAGGGCTCTTATCTA
131 GTGATAACTTAAGACTCTTATCTA
* * *
2879214 AAAAAATATAAAAATGCCCTTAGGGGATACTTTCTACCTAGAAGTACCTGATACCCTTAAAGGAC
1 AAAAAATACAAAAATGCCCCTAGGGGATACTTTCTACCTAGAAGTACCCGATACCCTTAAAGGAC
* ** *
2879279 TAAAAAATGATGTGGATGGCATGAACCTATCCTAAATGCCCACCTTCAACATAAAAGCAGACCTG
66 TAAAAAAGGATGTGGATGGCATGAACCTATCCTAAATGCCCACCTTCGGCATAAAAGCAGACCCG
* * * *
2879344 GTAATTACCTAAGACTC-GATTCTA
131 GTGATAACTTAAGACTCTTA-TCTA
* ** * * * *
2879368 AAAAATTACAAAAATGCCCCTAGGAAACACTTTCGACGTAGAAGTACCCGAGA-CCTGTAAAGGA
1 AAAAAATACAAAAATGCCCCTAGGGGATACTTTCTACCTAGAAGTACCCGATACCCT-TAAAGGA
* * *
2879432 CTAAAAAAGGCTGTGGATCGG-ATGAACCTATCCTAAATGCCCACCTTCGGCAAAAAAAC-GAAC
65 CTAAAAAAGGATGTGGAT-GGCATGAACCTATCCTAAATGCCCACCTTCGGCATAAAAGCAG-AC
* *
2879495 CCAGTGATAACTTAGGACTCAATT-T-TA
128 CCGGTGATAACTTAAGACTC--TTATCTA
* * * * *
2879522 AAAAATTACAAAAATACCCCGAGGGGATACTTT-TGACAC-AAAAGTACCCGATACCCCTAAAGG
1 AAAAAATACAAAAATGCCCCTAGGGGATACTTTCT-AC-CTAGAAGTACCCGATACCCTTAAAGG
* ** * * * * *
2879585 ACTAAAAAAAGATGTGGATGGTGTGAACGC-ATCCTAAATGCCCA-TTTTGACATAAATGTAGAC
64 ACTAAAAAAGGATGTGGATGGCATGAAC-CTATCCTAAATGCCCACCTTCGGCATAAAAGCAGAC
*
2879648 CCGGTGATAACTTAAGACTC-GATTCT-
128 CCGGTGATAACTTAAGACTCTTA-TCTA
* * * * * * * *
2879674 AAAAATTATAAAAATGCCCCTAGGAGATACTTTCAACGTAGAAGTACTCGAT-GCTTCTAAAGGA
1 AAAAAATACAAAAATGCCCCTAGGGGATACTTTCTACCTAGAAGTACCCGATACCCT-TAAAGGA
* * * **
2879738 CTAAAGAAGGATGTGGATGGCATCAACCTATCCTAAATGCCCACCTTCAGCATAAAAGCAGAATC
65 CTAAAAAAGGATGTGGATGGCATGAACCTATCCTAAATGCCCACCTTCGGCATAAAAGCAGACCC
* *
2879803 GGTGATAACCTAAGACTCGATT-T-TT
130 GGTGATAACTTAAGACTC--TTATCTA
* * * * *
2879828 AAAAAATACAAAAATGCCCTTAGGGGATACATTCGACGC-AGAAGTACCTGATACCC-TAAAGAA
1 AAAAAATACAAAAATGCCCCTAGGGGATACTTTCTAC-CTAGAAGTACCCGATACCCTTAAAGGA
* * * * * *
2879891 GTAAAAAA-AATGTGGATGGCGTGAACCAATCCTAAATGCCCACCTTCGGCATAAAAGCGGGCCC
65 CTAAAAAAGGATGTGGATGGCATGAACCTATCCTAAATGCCCACCTTCGGCATAAAAGCAGACCC
** *
2879955 CATGATAACCTAAGACTCGATT-T-TA
130 GGTGATAACTTAAGACTC--TTATCTA
* * * ** * * * * * *
2879980 AAAAATTACAAAAATACCCTTAAAGAATACTTTCGACGTAAAAGTATCCGATACCCGTAAA
1 AAAAAATACAAAAATGCCCCTAGGGGATACTTTCTACCTAGAAGTACCCGATACCCTTAAA
2880041 AGATTTAAAA
Statistics
Matches: 672, Mismatches: 126, Indels: 59
0.78 0.15 0.07
Matches are distributed among these distances:
151 2 0.00
152 200 0.30
153 83 0.12
154 380 0.57
155 7 0.01
ACGTcount: A:0.39, C:0.21, G:0.18, T:0.23
Consensus pattern (154 bp):
AAAAAATACAAAAATGCCCCTAGGGGATACTTTCTACCTAGAAGTACCCGATACCCTTAAAGGAC
TAAAAAAGGATGTGGATGGCATGAACCTATCCTAAATGCCCACCTTCGGCATAAAAGCAGACCCG
GTGATAACTTAAGACTCTTATCTA
Found at i:2879986 original size:306 final size:302
Alignment explanation
Indices: 2879030--2880031 Score: 1151
Period size: 308 Copynumber: 3.3 Consensus size: 302
2879020 GGCCCTAGGG
* * *
2879030 GACCCGGTGATAACC-AAGGACTCGGTTTTGAAAAAA-TACAAAAATGCCCTTAGTG-GATACTT
1 GACCCGGTGATAACCTAA-GACTCGATTCT-AAAAAATTACAAAAATGCCCCTAG-GAGATACTT
* * * * *
2879092 TCTACGTAGAAGTACCCGATACCCTTAAAGGACTAAAAAAGGATGTGGATGGCGTGAAGCTATCC
63 TCGACGTAGAAGTACCCGATGCTC-TAAAGGACTAAAAAAGGATGTGGATGGCATGAACCTATCC
* * * *
2879157 TAAATGCCCACCTTCGGCATAAAAGCAGACCCAATGATAACTTAGGGCTC-TTATCTAAAAAAAT
127 TAAATGCCCACCTTCGGCATAAAAGCAGAACCAGTGATAACTTAGGACTCATT-T-TTAAAAAAT
* *
2879221 ATAAAAATGCCCTTAGGGGATACTTTCTACCTAGAAGTACCTGATACCCTTAAAGGACTAAAAAA
190 ACAAAAATGCCCTTAGGGGATACTTTCGACC-AGAAGTACCTGATACCC-TAAAGGACTAAAAAA
* * *
2879286 TGATGTGGATGGCATGAACCTATCCTAAATGCCCACCTTCAACATAAAAGCA
253 -AATGTGGATGGCGTGAACC-ATCCTAAATGCCCACCTTCGACATAAAAGCA
* * * * *
2879338 GACCTGGTAATTACCTAAGACTCGATTCTAAAAAATTACAAAAATGCCCCTAGGAAACACTTTCG
1 GACCCGGTGATAACCTAAGACTCGATTCTAAAAAATTACAAAAATGCCCCTAGGAGATACTTTCG
* *
2879403 ACGTAGAAGTACCCGA-GACCTGTAAAGGACTAAAAAAGGCTGTGGATCGG-ATGAACCTATCCT
66 ACGTAGAAGTACCCGATG--CTCTAAAGGACTAAAAAAGGATGTGGAT-GGCATGAACCTATCCT
* * *
2879466 AAATGCCCACCTTCGGCAAAAAAAC-GAACCCAGTGATAACTTAGGACTCAATTTTAAAAAATTA
128 AAATGCCCACCTTCGGCATAAAAGCAGAA-CCAGTGATAACTTAGGACTCATTTTTAAAAAA-TA
* ** * * *
2879530 CAAAAATACCCCGAGGGGATACTTTTGACACAAAAGTACCCGATACCCCTAAAGGACTAAAAAAA
191 CAAAAATGCCCTTAGGGGATACTTTCGAC-CAGAAGTACCTGATA-CCCTAAAGGACTAAAAAAA
* * * * *
2879595 GATGTGGATGGTGTGAACGCATCCTAAATGCCCA-TTTTGACATAAATGTA
254 -ATGTGGATGGCGTGAAC-CATCCTAAATGCCCACCTTCGACATAAAAGCA
* * *
2879645 GACCCGGTGATAACTTAAGACTCGATTCT-AAAAATTATAAAAATGCCCCTAGGAGATACTTTCA
1 GACCCGGTGATAACCTAAGACTCGATTCTAAAAAATTACAAAAATGCCCCTAGGAGATACTTTCG
* * *
2879709 ACGTAGAAGTACTCGATGCTTCTAAAGGACTAAAGAAGGATGTGGATGGCATCAACCTATCCTAA
66 ACGTAGAAGTACCCGATGC-TCTAAAGGACTAAAAAAGGATGTGGATGGCATGAACCTATCCTAA
* * * * *
2879774 ATGCCCACCTTCAGCATAAAAGCAGAATCGGTGATAACCTAAGACTCGATTTTTAAAAAATACAA
130 ATGCCCACCTTCGGCATAAAAGCAGAACCAGTGATAACTTAGGACTC-ATTTTTAAAAAATACAA
* * *
2879839 AAATGCCCTTAGGGGATACATTCGACGCAGAAGTACCTGATACCCTAAAGAAGTAAAAAAAATGT
194 AAATGCCCTTAGGGGATACTTTCGAC-CAGAAGTACCTGATACCCTAAAGGACTAAAAAAAATGT
* *
2879904 GGATGGCGTGAACCAATCCTAAATGCCCACCTTCGGCATAAAAGCG
258 GGATGGCGTGAACC-ATCCTAAATGCCCACCTTCGACATAAAAGCA
* ** * * * *
2879950 GGCCCCATGATAACCTAAGACTCGATTTTAAAAAATTACAAAAATACCCTTA-AAGAATACTTTC
1 GACCCGGTGATAACCTAAGACTCGATTCTAAAAAATTACAAAAATGCCCCTAGGAG-ATACTTTC
* *
2880014 GACGTAAAAGTATCCGAT
65 GACGTAGAAGTACCCGAT
2880032 ACCCGTAAAA
Statistics
Matches: 583, Mismatches: 89, Indels: 46
0.81 0.12 0.06
Matches are distributed among these distances:
303 1 0.00
304 30 0.05
305 56 0.10
306 200 0.34
307 67 0.11
308 218 0.37
309 11 0.02
ACGTcount: A:0.38, C:0.21, G:0.18, T:0.23
Consensus pattern (302 bp):
GACCCGGTGATAACCTAAGACTCGATTCTAAAAAATTACAAAAATGCCCCTAGGAGATACTTTCG
ACGTAGAAGTACCCGATGCTCTAAAGGACTAAAAAAGGATGTGGATGGCATGAACCTATCCTAAA
TGCCCACCTTCGGCATAAAAGCAGAACCAGTGATAACTTAGGACTCATTTTTAAAAAATACAAAA
ATGCCCTTAGGGGATACTTTCGACCAGAAGTACCTGATACCCTAAAGGACTAAAAAAAATGTGGA
TGGCGTGAACCATCCTAAATGCCCACCTTCGACATAAAAGCA
Found at i:2880486 original size:152 final size:152
Alignment explanation
Indices: 2880307--2880584 Score: 414
Period size: 152 Copynumber: 1.8 Consensus size: 152
2880297 TTATTTATTT
** * * *
2880307 ATTTAATTTTGAAAAATATTATTTCGTACTTTAATAGAAGCAC-GAAAAGATATGAAAAGATTTT
1 ATTTAATTTCAAAAAATATCATTTCGTACCTTAATAGAAGC-CTGAAAAGATACGAAAAGATTTT
* * *
2880371 GAAAATCTTTTATACCCCTACGGATGCCCATAGGAATATAAAAGATTAAAAAAGATGATTAAAAT
65 AAAAATCTTTTATACCCCTACGGATGCCCATAGGAATATAAAAAATTAAAAAAGATAATTAAAAT
2880436 TTATTTTGGTTATGAAATTGTTA
130 TTATTTTGGTTATGAAATTGTTA
* * **
2880459 ATTTAATTTCAAAAAATATCATTTCGTACCTTAATGGAAGCCTGAAAAGATACGAAGATTTTTTA
1 ATTTAATTTCAAAAAATATCATTTCGTACCTTAATAGAAGCCTGAAAAGATACGAAAAGATTTTA
* *
2880524 AAAATCTTTTATACCGCTGCGGATGCCCATAGGAATATAAAAAATTAAAAAAGATAATTAA
66 AAAATCTTTTATACCCCTACGGATGCCCATAGGAATATAAAAAATTAAAAAAGATAATTAA
2880585 TATAGAAATA
Statistics
Matches: 111, Mismatches: 14, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
151 1 0.01
152 110 0.99
ACGTcount: A:0.43, C:0.10, G:0.13, T:0.33
Consensus pattern (152 bp):
ATTTAATTTCAAAAAATATCATTTCGTACCTTAATAGAAGCCTGAAAAGATACGAAAAGATTTTA
AAAATCTTTTATACCCCTACGGATGCCCATAGGAATATAAAAAATTAAAAAAGATAATTAAAATT
TATTTTGGTTATGAAATTGTTA
Found at i:2881565 original size:9 final size:9
Alignment explanation
Indices: 2881551--2881587 Score: 56
Period size: 10 Copynumber: 3.9 Consensus size: 9
2881541 CTAGCTTGGT
2881551 TTTTTTCTA
1 TTTTTTCTA
2881560 TTTTTTCCTA
1 TTTTTT-CTA
2881570 TTTTCTTCTA
1 TTTT-TTCTA
2881580 TTTTTTCT
1 TTTTTTCT
2881588 CTTGCTTTTC
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
9 10 0.38
10 14 0.54
11 2 0.08
ACGTcount: A:0.08, C:0.16, G:0.00, T:0.76
Consensus pattern (9 bp):
TTTTTTCTA
Found at i:2882452 original size:167 final size:164
Alignment explanation
Indices: 2882197--2882851 Score: 755
Period size: 167 Copynumber: 3.9 Consensus size: 164
2882187 TAGACTGAAG
* * * * * *
2882197 AAAATCCCTCAAAAAATATTTACGGAGAAGAAAAC-TCG-ATTTCTTGAAAAAATGAGAATTTCA
1 AAAATCCCCCCAAAAA-ATTTACGAAGTAGAAAACAACGTATTTC--GAAAAAAGGA-AATTTCA
* ** * * *
2882260 A-TAAAAATGTCCAAAACTCATGAAAATAAATTAATTTTTAAAAAATAAATTAATATGA-ATCAA
62 AGGAAAAAAAT-CAAAACTCATGAAAATGAATGAATTTTTGAAAAATAAATTAATATGAGAT-AA
* * * * **
2882323 ATTATGATGTTTGATGAATTCTAAAAATTTAAAACTGAGA
125 ATGATAATGTTTGATGAATTTTAAAAATTGAAAACCAAGA
* * * * *
2882363 AAAAGCCCCTCGAAAAAATTTACGAAGTAGAAAACATCGTATTTAGGAAAAAATGG-AGTTTCAA
1 AAAATCCCC-CCAAAAAATTTACGAAGTAGAAAACAACGTATTT-CGAAAAAA-GGAAATTTCAA
* * * * * * *
2882427 AGAAAAAAATCAAAAATGAATGAAAATGAATGAATTTTTGAAAAGTGAATTACTATGAAATAAAT
63 GGAAAAAAATCAAAACT-CATGAAAATGAATGAATTTTTGAAAAATAAATTAATATGAGATAAAT
2882492 GATAATGTTTGATGAATTTTAAAAATTGAAAACCAAGA
127 GATAATGTTTGATGAATTTTAAAAATTGAAAACCAAGA
* * *
2882530 AAAATCCCCCCCAAAAAATTTACGGAGTAGAAAATAACGTATTTTGAGAAAAAGGAAATTTCAAG
1 AAAAT-CCCCCCAAAAAATTTACGAAGTAGAAAACAACGTATTTCGA-AAAAAGGAAATTTCAAG
* * * *
2882595 GAAAAAAATCAAAAGCTCATGAAAATGATTGAATTTTTGAAAAATTATTTAATATGAGATAAATT
64 GAAAAAAATCAAAA-CTCATGAAAATGAATGAATTTTTGAAAAATAAATTAATATGAGATAAATG
2882660 ATAATGTTTGATGAATTTTAAAAATTGAAAACCAAGA
128 ATAATGTTTGATGAATTTTAAAAATTGAAAACCAAGA
*
2882697 AAAATCCCCCCAGAAAAATTTACGAAGTAG-AAACACCGTATTTCGAAAAAAGGGAAATTTCAAG
1 AAAATCCCCCCA-AAAAATTTACGAAGTAGAAAACAACGTATTTCGAAAAAA-GGAAATTTCAAG
* *
2882761 GAAAAAAATCCAAAGCTCATGAAAATGAATGAATTTTTGAAAACTAAATTAATATGAGATAAATG
64 GAAAAAAAT-CAAAACTCATGAAAATGAATGAATTTTTGAAAAATAAATTAATATGAGATAAATG
*
2882826 ATAATGTTTTATGAATTTTAAAAATT
128 ATAATGTTTGATGAATTTTAAAAATT
2882852 AAGAAAAATC
Statistics
Matches: 421, Mismatches: 53, Indels: 30
0.84 0.11 0.06
Matches are distributed among these distances:
165 5 0.01
166 151 0.36
167 253 0.60
168 12 0.03
ACGTcount: A:0.50, C:0.09, G:0.13, T:0.28
Consensus pattern (164 bp):
AAAATCCCCCCAAAAAATTTACGAAGTAGAAAACAACGTATTTCGAAAAAAGGAAATTTCAAGGA
AAAAAATCAAAACTCATGAAAATGAATGAATTTTTGAAAAATAAATTAATATGAGATAAATGATA
ATGTTTGATGAATTTTAAAAATTGAAAACCAAGA
Found at i:2882592 original size:333 final size:333
Alignment explanation
Indices: 2882240--2882851 Score: 844
Period size: 333 Copynumber: 1.8 Consensus size: 333
2882230 ACTCGATTTC
* * **
2882240 TTGAAAAAATGAGAATTTCAA-TAAAAATGTCCAAAA-CTCATGAAAATAAATT-AATTTTTAAA
1 TTGAAAAAAGGAGAATTTCAAGGAAAAAAAT-CAAAAGCTCATGAAAAT-AATTGAATTTTTAAA
* * **
2882302 AAATAAATTAATATGA-ATCAAATTATGATGTTTGATGAATTCTAAAAATTTAAAACTGAGAAAA
64 AAATAAATTAATATGAGAT-AAATTATAATGTTTGATGAATTCTAAAAATTGAAAACCAAGAAAA
* * * * *
2882366 AGCCCCTC-GAAAAAATTTACGAAGTAGAAAACATCGTATTTAGGAAAAAATGG-AGTTTCAAAG
128 AGCCCCCCAG-AAAAATTTACGAAGTAG-AAACACCGTATTT-CGAAAAAAGGGAAATTTCAAAG
* * *
2882429 AAAAAAAT-CAAAAATGAATGAAAATGAATGAATTTTTGAAAAGTGAATTACTATGAAATAAATG
190 AAAAAAATCCAAAAAT-AATGAAAATGAATGAATTTTTGAAAACTAAATTAATATGAAATAAATG
2882493 ATAATGTTTGATGAATTTTAAAAATTGAAAACCAAGAAAAATCCCCCCCAAAAAATTTACGGAGT
254 ATAATGTTTGATGAATTTTAAAAATTGAAAACCAAGAAAAATCCCCCCCAAAAAATTTACGGAGT
2882558 AGAAAATAACGTATT
319 AGAAAATAACGTATT
* *
2882573 TTGAGAAAAAGGA-AATTTCAAGGAAAAAAATCAAAAGCTCATGAAAATGATTGAATTTTTGAAA
1 TTGA-AAAAAGGAGAATTTCAAGGAAAAAAATCAAAAGCTCATGAAAATAATTGAATTTTTAAAA
* * * *
2882637 AATTATTTAATATGAGATAAATTATAATGTTTGATGAATTTTAAAAATTGAAAACCAAGAAAAAT
65 AATAAATTAATATGAGATAAATTATAATGTTTGATGAATTCTAAAAATTGAAAACCAAGAAAAAG
*
2882702 CCCCCCAGAAAAATTTACGAAGTAGAAACACCGTATTTCGAAAAAAGGGAAATTTCAAGGAAAAA
130 CCCCCCAGAAAAATTTACGAAGTAGAAACACCGTATTTCGAAAAAAGGGAAATTTCAAAGAAAAA
** * *
2882767 AATCCAAAGCTCATGAAAATGAATGAATTTTTGAAAACTAAATTAATATGAGATAAATGATAATG
195 AATCCAAAAATAATGAAAATGAATGAATTTTTGAAAACTAAATTAATATGAAATAAATGATAATG
*
2882832 TTTTATGAATTTTAAAAATT
260 TTTGATGAATTTTAAAAATT
2882852 AAGAAAAATC
Statistics
Matches: 243, Mismatches: 28, Indels: 16
0.85 0.10 0.06
Matches are distributed among these distances:
332 9 0.04
333 116 0.48
334 115 0.47
335 3 0.01
ACGTcount: A:0.50, C:0.09, G:0.13, T:0.28
Consensus pattern (333 bp):
TTGAAAAAAGGAGAATTTCAAGGAAAAAAATCAAAAGCTCATGAAAATAATTGAATTTTTAAAAA
ATAAATTAATATGAGATAAATTATAATGTTTGATGAATTCTAAAAATTGAAAACCAAGAAAAAGC
CCCCCAGAAAAATTTACGAAGTAGAAACACCGTATTTCGAAAAAAGGGAAATTTCAAAGAAAAAA
ATCCAAAAATAATGAAAATGAATGAATTTTTGAAAACTAAATTAATATGAAATAAATGATAATGT
TTGATGAATTTTAAAAATTGAAAACCAAGAAAAATCCCCCCCAAAAAATTTACGGAGTAGAAAAT
AACGTATT
Found at i:2884367 original size:42 final size:42
Alignment explanation
Indices: 2884279--2884463 Score: 146
Period size: 42 Copynumber: 4.4 Consensus size: 42
2884269 AGTCTCCCAG
* * * * *
2884279 GTCTAAGCCAACG-GCCAGACGAAAGATGAAGAGGTTTACT-GG
1 GTCTAAGCCGACGAG-CAGATGAAAGATGAAGAAGTCT-CTCGA
2884321 GTCTAAGCCGACGAGCAGATGAAAGATGAAGAAGTCTCTCGA
1 GTCTAAGCCGACGAGCAGATGAAAGATGAAGAAGTCTCTCGA
* * * *
2884363 GTCTAAGCCGATGGGCAGATGACGAA-A-GAAAAAGTCTC-CTGG
1 GTCTAAGCCGACGAGCAGATGA--AAGATGAAGAAGTCTCTC-GA
* * ** * *
2884405 GTCTAAGCCAACGGGCAGATGATGGATGAAGAAGTCTCCCAA
1 GTCTAAGCCGACGAGCAGATGAAAGATGAAGAAGTCTCTCGA
*
2884447 GACTAAGCCGACGAGCA
1 GTCTAAGCCGACGAGCA
2884464 AACAATTGAT
Statistics
Matches: 116, Mismatches: 19, Indels: 16
0.77 0.13 0.11
Matches are distributed among these distances:
41 4 0.03
42 107 0.92
43 3 0.03
44 2 0.02
ACGTcount: A:0.34, C:0.21, G:0.30, T:0.16
Consensus pattern (42 bp):
GTCTAAGCCGACGAGCAGATGAAAGATGAAGAAGTCTCTCGA
Found at i:2884453 original size:126 final size:127
Alignment explanation
Indices: 2884235--2884611 Score: 320
Period size: 126 Copynumber: 3.0 Consensus size: 127
2884225 AAATATCTTG
* * * * * * *
2884235 GGACTGAGCCGATGGGTAGAGGAAAGATAAAAAAAGTCTCCCAGGTCTAAGCCAACGGCCAGACG
1 GGACTGAACCGATGGGCAGATGAAAAATAAAAAAA-TCTCCCGGGTCTAAGCCAACGGACAGATG
** * * * *** * *
2884300 AAAGATGAAGAGGTTTACTGGGTCTAAGCCGACGAGCAGATGAA-AGATGAA-GAAGTCTCTCGA
65 ATGGATGAA-AAGTCTCCCAAGACTAAGCCGACGAGCAGATGAATAGATAAAGGAAGTCTC-CGA
* * * * * *
2884363 -GTCT-AAGCCGATGGGCAGATGACGAAA-GAAAAAGTCTCCTGGGTCTAAGCCAACGGGCAGAT
1 GGACTGAA-CCGATGGGCAGATGA-AAAATAAAAAAATCTCCCGGGTCTAAGCCAACGGACAGAT
** * *
2884425 GATGGATGAAGAAGTCTCCCAAGACTAAGCCGACGAGCA-AACAATTGATAAAGGAAGTCTCCTA
64 GATGGATGAA-AAGTCTCCCAAGACTAAGCCGACGAGCAGATGAATAGATAAAGGAAGTCTCCGA
* *
2884489 GGACTGAACCGATGGGCAGATGAAAAATAAAAAAATCTCCCGGGTCTAAGTCTACGGACAGATGA
1 GGACTGAACCGATGGGCAGATGAAAAATAAAAAAATCTCCCGGGTCTAAGCCAACGGACAGATGA
* * * * * *
2884554 TTGATGAAAAGTCTCCCAGGTCTAAGCAGACG-GACAGATG-ATTGATAAAGGAAATCTC
66 TGGATGAAAAGTCTCCCAAGACTAAGCCGACGAG-CAGATGAATAGATAAAGGAAGTCTC
2884612 TTGAGATTGA
Statistics
Matches: 199, Mismatches: 41, Indels: 20
0.77 0.16 0.08
Matches are distributed among these distances:
125 4 0.02
126 105 0.53
127 86 0.43
128 4 0.02
ACGTcount: A:0.36, C:0.19, G:0.28, T:0.17
Consensus pattern (127 bp):
GGACTGAACCGATGGGCAGATGAAAAATAAAAAAATCTCCCGGGTCTAAGCCAACGGACAGATGA
TGGATGAAAAGTCTCCCAAGACTAAGCCGACGAGCAGATGAATAGATAAAGGAAGTCTCCGA
Found at i:2884551 original size:127 final size:126
Alignment explanation
Indices: 2884370--2884611 Score: 308
Period size: 127 Copynumber: 1.9 Consensus size: 126
2884360 CGAGTCTAAG
* * * * *
2884370 CCGATGGGCAGATGACGAAAGAAAAAGTCTCCTGGGTCTAAGCCAACGGGCAGATGATGGATGAA
1 CCGATGGGCAGATGACAAAAAAAAAAATCTCCCGGGTCTAAGCCAACGGACAGATGATGGATGAA
* *
2884435 GAAGTCTCCCAAGACTAAGCCGAC-GAGCAAACAATTGATAAAGGAAGTCTCCTAGGACTGAA
66 -AAGTCTCCCAAGACTAAGCAGACGGA-CAAACAATTGATAAAGGAAATCTCCTAGGACTGAA
* * *
2884497 CCGATGGGCAGATGA-AAAATAAAAAAATCTCCCGGGTCTAAGTCTACGGACAGATGATTGATGA
1 CCGATGGGCAGATGACAAAA-AAAAAAATCTCCCGGGTCTAAGCCAACGGACAGATGATGGATGA
* * * **
2884561 AAAGTCTCCCAGGTCTAAGCAGACGGACAGATGATTGATAAAGGAAATCTC
65 AAAGTCTCCCAAGACTAAGCAGACGGACAAACAATTGATAAAGGAAATCTC
2884612 TTGAGATTGA
Statistics
Matches: 98, Mismatches: 15, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
126 43 0.44
127 55 0.56
ACGTcount: A:0.37, C:0.19, G:0.26, T:0.18
Consensus pattern (126 bp):
CCGATGGGCAGATGACAAAAAAAAAAATCTCCCGGGTCTAAGCCAACGGACAGATGATGGATGAA
AAGTCTCCCAAGACTAAGCAGACGGACAAACAATTGATAAAGGAAATCTCCTAGGACTGAA
Found at i:2884576 original size:41 final size:41
Alignment explanation
Indices: 2884519--2884599 Score: 119
Period size: 41 Copynumber: 2.0 Consensus size: 41
2884509 TGAAAAATAA
* *
2884519 AAAAATCTCCCGGGTCTAAGTC-TACGGACAGATGATTGATG
1 AAAAATCTCCCAGGTCTAAG-CAGACGGACAGATGATTGATG
*
2884560 AAAAGTCTCCCAGGTCTAAGCAGACGGACAGATGATTGAT
1 AAAAATCTCCCAGGTCTAAGCAGACGGACAGATGATTGAT
2884600 AAAGGAAATC
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
40 1 0.03
41 35 0.97
ACGTcount: A:0.33, C:0.20, G:0.25, T:0.22
Consensus pattern (41 bp):
AAAAATCTCCCAGGTCTAAGCAGACGGACAGATGATTGATG
Found at i:2884686 original size:126 final size:126
Alignment explanation
Indices: 2884390--2884690 Score: 309
Period size: 126 Copynumber: 2.4 Consensus size: 126
2884380 GATGACGAAA
* *
2884390 GAAAAAGTCTCCTGGGTCTAAGCCAACGGGCAGATGATGGATGAAGAAGTCTCCCAAGACTAAGC
1 GAAAAAGTCTCCCGGGTCTAAGCCAACGGGCAGATGATAGATGAA-AAGTCTCCCAAGACTAAGC
* * * * *
2884455 CGACGAGCAAACAATTGATAAAGGAAGTCTCCTAGGACTGAACCGATGGGCAGATGAAAAAT
65 AGACGAGCAAACAATTGATAAAGGAAATCTCCTAGGACTGAACCGACGGGCAAACGAAAAAT
* * * * * * * *
2884517 AAAAAAATCTCCCGGGTCTAAGTCTACGGACAGATGATTGATGAAAAGTCTCCCAGGTCTAAGCA
1 GAAAAAGTCTCCCGGGTCTAAGCCAACGGGCAGATGATAGATGAAAAGTCTCCCAAGACTAAGCA
* ** * * * * *
2884582 GACG-GACAGATGATTGATAAAGGAAATCT-CTTGAGATTGAGCTGACGGGCAAACGAAAGAT
66 GACGAG-CAAACAATTGATAAAGGAAATCTCCTAG-GACTGAACCGACGGGCAAACGAAAAAT
* * * * *
2884643 GAAAAAGTCTCCCGGGTCTCAGCCGACGGGTAGGTGAAAGATGAAAAG
1 GAAAAAGTCTCCCGGGTCTAAGCCAACGGGCAGATGATAGATGAAAAG
2884691 GTTTGCTAGG
Statistics
Matches: 140, Mismatches: 32, Indels: 5
0.79 0.18 0.03
Matches are distributed among these distances:
125 4 0.03
126 98 0.70
127 38 0.27
ACGTcount: A:0.36, C:0.19, G:0.27, T:0.18
Consensus pattern (126 bp):
GAAAAAGTCTCCCGGGTCTAAGCCAACGGGCAGATGATAGATGAAAAGTCTCCCAAGACTAAGCA
GACGAGCAAACAATTGATAAAGGAAATCTCCTAGGACTGAACCGACGGGCAAACGAAAAAT
Found at i:2884745 original size:42 final size:43
Alignment explanation
Indices: 2884634--2884823 Score: 176
Period size: 42 Copynumber: 4.5 Consensus size: 43
2884624 TGACGGGCAA
* * * * * *
2884634 ACGAAAGATGAAAAAGTCTCCC-GGGTCTCAGCCGACGGGTAG
1 ACGAAAGATGAAGAAGTCTCCCTAGGTCTAAGTCAATGGGTAG
** ** * *
2884676 GTGAAAGATGAA-AAGGT-TTGCTAGGTCTAAG-CGGATGGGTAA
1 ACGAAAGATGAAGAA-GTCTCCCTAGGTCTAAGTC-AATGGGTAG
2884718 ACGAAAGATGAAGAAGTCTCCCT-GGTCTAAGTCAATGGGTAG
1 ACGAAAGATGAAGAAGTCTCCCTAGGTCTAAGTCAATGGGTAG
* *
2884760 ACAAAAGATGAAGAAGTCT-CCTAGGTCTAAGTCAATAGGTAG
1 ACGAAAGATGAAGAAGTCTCCCTAGGTCTAAGTCAATGGGTAG
**
2884802 ACGATGGATGAAGAAGTCTCCC
1 ACGAAAGATGAAGAAGTCTCCC
2884824 GAGACTGAGC
Statistics
Matches: 121, Mismatches: 19, Indels: 15
0.78 0.12 0.10
Matches are distributed among these distances:
41 8 0.07
42 105 0.87
43 8 0.07
ACGTcount: A:0.34, C:0.16, G:0.29, T:0.20
Consensus pattern (43 bp):
ACGAAAGATGAAGAAGTCTCCCTAGGTCTAAGTCAATGGGTAG
Found at i:2884784 original size:84 final size:84
Alignment explanation
Indices: 2884632--2884824 Score: 210
Period size: 84 Copynumber: 2.3 Consensus size: 84
2884622 GCTGACGGGC
* * * *** * *
2884632 AAACGAAAGATGAAAAAGTCTCCCGGGTCTCAGCCGACGGGTAGGTGAAAGATGAAAAGGTTTGC
1 AAACGAAAGATGAAGAAGTCTCCCGGGTCTAAGCCAACGGGTAGACAAAAGATGAAAAGGTCTCC
* *
2884697 TAGGTCTAAG-CGGATGGGT
66 TAGGTCTAAGTC-AATAGGT
* * *
2884716 AAACGAAAGATGAAGAAGTCTCCCTGGTCTAAGTCAATGGGTAGACAAAAGATGAAGAA-GTCTC
1 AAACGAAAGATGAAGAAGTCTCCCGGGTCTAAGCCAACGGGTAGACAAAAGATGAA-AAGGTCTC
2884780 CTAGGTCTAAGTCAATAGGT
65 CTAGGTCTAAGTCAATAGGT
* **
2884800 AGACGATGGATGAAGAAGTCTCCCG
1 AAACGAAAGATGAAGAAGTCTCCCG
2884825 AGACTGAGCC
Statistics
Matches: 90, Mismatches: 17, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
84 87 0.97
85 3 0.03
ACGTcount: A:0.35, C:0.16, G:0.30, T:0.20
Consensus pattern (84 bp):
AAACGAAAGATGAAGAAGTCTCCCGGGTCTAAGCCAACGGGTAGACAAAAGATGAAAAGGTCTCC
TAGGTCTAAGTCAATAGGT
Found at i:2884817 original size:379 final size:379
Alignment explanation
Indices: 2884134--2884916 Score: 892
Period size: 379 Copynumber: 2.1 Consensus size: 379
2884124 CAGACTTTTG
* * * * *
2884134 ATAAAGAAAATCTCCCGGGTCTAAGCCGATGGGCAAAAGATTGATTAGAAGTCTCCCGGGTCTAA
1 ATAAA-AAAATCTCCCGGGTCTAAGCCGACGGACAAAAGATTGATGAAAAGTCTCCCAGGTCTAA
** * * * * * *
2884199 GCCTACGGCCAGACAACTGATAAAGGAAATATCTTGGGACTGAGCCGATGGGTAGAGGAAAGATA
65 GCAGACGGACAGACAACTGATAAAGGAAATATCTTGAGACTGAGCCGACGGGCAAACGAAAGATA
* *
2884264 AAAAAAGTCTCCCAGGTCTAAGCCAACGGCCAGACGAAAGATGAAGAGGTTTACTGGGTCTAAGC
130 AAAAAAGTCTCCCAGGTCTAAGCCAACGGCCAGACGAAAGATGAAAAGGTTTACTAGGTCTAAGC
* * * * *
2884329 CGACGAGCAGATGAAAGATGAAGAAGTCTCTCGAGTCTAAGCCGATGGGCAGATGACGAAAGAAA
195 CGACGAGCAAACGAAAGATGAAGAAGTCTCCCGAGTCTAAGCCAATGGG-AGATGACAAAAGAAA
* * *
2884394 AAGTCTCCTGGGTCTAAGCCAACGGGCAGATGATGGATGAAGAAGTCTCCCAAGACTAAGCCGAC
259 AAGTCTCCTAGGTCTAAGCCAACAGGCAGACGATGGATGAAGAAGTCTCCCAAGACTAAGCCGAC
* * * *
2884459 GAGCAAACAATTGATAAAGGAAGTCTCCTAGGACTGAACCGATGGGCAGATGAAAA
324 GAGCAAACAATTGATAAAAGAAGTCTCCCAAGACTGAACCGATGGGCAAATGAAAA
* * * *
2884515 ATAAAAAAATCTCCCGGGTCTAAGTCTACGGACAGATGATTGATGAAAAGTCTCCCAGGTCTAAG
1 ATAAAAAAATCTCCCGGGTCTAAGCCGACGGACAAAAGATTGATGAAAAGTCTCCCAGGTCTAAG
** * * * * *
2884580 CAGACGGACAGATGATTGATAAAGGAAATCTCTTGAGATTGAGCTGACGGGCAAACGAAAGAT-G
66 CAGACGGACAGACAACTGATAAAGGAAATATCTTGAGACTGAGCCGACGGGCAAACGAAAGATAA
* * * ** ** * *
2884644 AAAAAGTCTCCCGGGTCTCAGCCGACGGGTAGGTGAAAGATGAAAAGGTTTGCTAGGTCTAAGCG
131 AAAAAGTCTCCCAGGTCTAAGCCAACGGCCAGACGAAAGATGAAAAGGTTTACTAGGTCTAAGCC
* * * * *
2884709 GATGGGTAAACGAAAGATGAAGAAGTCTCCCTG-GTCTAAGTCAATGGG-TA-GACAAAAGATGA
196 GACGAGCAAACGAAAGATGAAGAAGTCTCCC-GAGTCTAAGCCAATGGGAGATGACAAAAGA--A
* * * * *
2884771 AGAAGTCTCCTAGGTCTAAGTCAATAGGTAGACGATGGATGAAGAAGTCTCCCGAGACTGAGCCG
258 A-AAGTCTCCTAGGTCTAAGCCAACAGGCAGACGATGGATGAAGAAGTCTCCCAAGACTAAGCCG
* * **
2884836 ACGGGCAGATGATTGATAAAAGAAGTCTCCCAAGACTGAACCGATGGGCAAATGAAAA
322 ACGAGCAAACAATTGATAAAAGAAGTCTCCCAAGACTGAACCGATGGGCAAATGAAAA
* * *
2884894 A-AACAGAAGTCTTCCGGGTCTAA
1 ATAA-AAAAATCTCCCGGGTCTAA
2884917 ACTGACAAGT
Statistics
Matches: 333, Mismatches: 64, Indels: 12
0.81 0.16 0.03
Matches are distributed among these distances:
376 8 0.02
377 1 0.00
378 4 0.01
379 214 0.64
380 101 0.30
381 5 0.02
ACGTcount: A:0.36, C:0.18, G:0.28, T:0.18
Consensus pattern (379 bp):
ATAAAAAAATCTCCCGGGTCTAAGCCGACGGACAAAAGATTGATGAAAAGTCTCCCAGGTCTAAG
CAGACGGACAGACAACTGATAAAGGAAATATCTTGAGACTGAGCCGACGGGCAAACGAAAGATAA
AAAAAGTCTCCCAGGTCTAAGCCAACGGCCAGACGAAAGATGAAAAGGTTTACTAGGTCTAAGCC
GACGAGCAAACGAAAGATGAAGAAGTCTCCCGAGTCTAAGCCAATGGGAGATGACAAAAGAAAAA
GTCTCCTAGGTCTAAGCCAACAGGCAGACGATGGATGAAGAAGTCTCCCAAGACTAAGCCGACGA
GCAAACAATTGATAAAAGAAGTCTCCCAAGACTGAACCGATGGGCAAATGAAAA
Found at i:2885087 original size:42 final size:42
Alignment explanation
Indices: 2884977--2885099 Score: 103
Period size: 42 Copynumber: 3.0 Consensus size: 42
2884967 GCAAATGATT
* * *
2884977 GATGAA-AAGT-TACCGAGTCTAAGT-AGATGGGCAGACAATT
1 GATGAAGAAGTCTCCCGAGTCTAAGTCA-ACGGGCAGACAATG
* * *
2885017 GATAAAGGAAATCTCCCGAGAT-TGAGTCAACGGGCAGACGAA-G
1 GATGAA-GAAGTCTCCCGAG-TCTAAGTCAACGGGCAGAC-AATG
* *
2885060 GATGAAGAAGTCTCCCGAGTCTAAGTCAACGAGTAGACAA
1 GATGAAGAAGTCTCCCGAGTCTAAGTCAACGGGCAGACAA
2885100 AAGATAAAGA
Statistics
Matches: 65, Mismatches: 11, Indels: 13
0.73 0.12 0.15
Matches are distributed among these distances:
40 5 0.08
41 3 0.05
42 29 0.45
43 24 0.37
44 4 0.06
ACGTcount: A:0.37, C:0.17, G:0.28, T:0.18
Consensus pattern (42 bp):
GATGAAGAAGTCTCCCGAGTCTAAGTCAACGGGCAGACAATG
Found at i:2885586 original size:41 final size:41
Alignment explanation
Indices: 2885541--2885649 Score: 175
Period size: 41 Copynumber: 2.7 Consensus size: 41
2885531 AGTCCCCTGG
*
2885541 GTCTAAGCCGA-TGGGTAGACGATTGATGAGAAGTCTCCCAA
1 GTCTAAGCCGACT-AGTAGACGATTGATGAGAAGTCTCCCAA
*
2885582 GTCTAAGCCGACTAGTAGACGATTGATGAGAAGTCTCCTAA
1 GTCTAAGCCGACTAGTAGACGATTGATGAGAAGTCTCCCAA
*
2885623 GTTTAAGCCGACTAGTAGACGATTGAT
1 GTCTAAGCCGACTAGTAGACGATTGAT
2885650 AAAAGAAATC
Statistics
Matches: 64, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
41 63 0.98
42 1 0.02
ACGTcount: A:0.30, C:0.18, G:0.27, T:0.25
Consensus pattern (41 bp):
GTCTAAGCCGACTAGTAGACGATTGATGAGAAGTCTCCCAA
Found at i:2885730 original size:42 final size:42
Alignment explanation
Indices: 2885346--2885846 Score: 165
Period size: 42 Copynumber: 12.0 Consensus size: 42
2885336 ATCGACGGGT
* * * * * *
2885346 AGACGAAAGATGAAGAAGTCTTCTAGGTCTAAGCCGACGGGT
1 AGACGAAAGATAAAGAAGTCTCCCAGGTTTAAGCCGATGGGC
* * ** * * *
2885388 AGATGAAAGATGAAGAAGTCTATCAGGTCTAAGCTGACGGGC
1 AGACGAAAGATAAAGAAGTCTCCCAGGTTTAAGCCGATGGGC
* * * * * * * *
2885430 AGATGAAAGATGACGAGGTCTCTCAGGTCTAAGCCGACGGCC
1 AGACGAAAGATAAAGAAGTCTCCCAGGTTTAAGCCGATGGGC
* * * ** * *
2885472 AGATGATTA-ATAAAGGAAGTCTCTC-GAGACTAAGGCGATAGGC
1 AGACGA-AAGATAAA-GAAGTCTCCCAG-GTTTAAGCCGATGGGC
* * * * *
2885515 AGATGAAAGATGAAGAAGTC-CCCTGGGTCTAAGCCGATGGGT
1 AGACGAAAGATAAAGAAGTCTCCC-AGGTTTAAGCCGATGGGC
** * * * * *
2885557 AGACGATTGAT-GAGAAGTCTCCCAAGTCTAAGCCGACT-AGT
1 AGACGAAAGATAAAGAAGTCTCCCAGGTTTAAGCCGA-TGGGC
** * * * * *
2885598 AGACGATTGAT-GAGAAGTCTCCTAAGTTTAAGCCGACT-AGT
1 AGACGAAAGATAAAGAAGTCTCCCAGGTTTAAGCCGA-TGGGC
** * ** ** * * * **
2885639 AGACGATTGATAAAAGAAATCTCCTGGGACTGAGCTGACGGTT
1 AGACGAAAGAT-AAAGAAGTCTCCCAGGTTTAAGCCGATGGGC
* * *
2885682 AAACGAAAGATAAAGAAGTCTCCCAGGTTTAAGTCAATGGGC
1 AGACGAAAGATAAAGAAGTCTCCCAGGTTTAAGCCGATGGGC
* * *** * **
2885724 AGACGAAAGATGAAGAGGT-TAATAGGTCTAAGCCGACAGGC
1 AGACGAAAGATAAAGAAGTCTCCCAGGTTTAAGCCGATGGGC
* * *
2885765 AGACGAAAGATAAAGAGGTCTCCTAGGTTTGAGCCGATGGGC
1 AGACGAAAGATAAAGAAGTCTCCCAGGTTTAAGCCGATGGGC
* ** * * *
2885807 AGATGATGGATAAAG-AGTCTCCCAAGTCTAAACCGATGGG
1 AGACGAAAGATAAAGAAGTCTCCCAGGTTTAAGCCGATGGG
2885847 TAAATAATGG
Statistics
Matches: 358, Mismatches: 89, Indels: 25
0.76 0.19 0.05
Matches are distributed among these distances:
41 123 0.34
42 177 0.49
43 58 0.16
ACGTcount: A:0.34, C:0.17, G:0.29, T:0.20
Consensus pattern (42 bp):
AGACGAAAGATAAAGAAGTCTCCCAGGTTTAAGCCGATGGGC
Found at i:2885836 original size:83 final size:84
Alignment explanation
Indices: 2885305--2885842 Score: 318
Period size: 83 Copynumber: 6.4 Consensus size: 84
2885295 CAACCGGTAA
* * ** * *
2885305 ATGATTGATTAAGGAAGTCTCCCAAGACTAAATCGACGGGTAGACGAAAGATGAAGAAGTCTTCT
1 ATGATTGA-TAAAGAAGTCTCCCAAGTCTAAGCCGACAGGTAGACGAAAGATGAAGAAGTCTCCT
* * *
2885370 AGGTCTAAGCCGACGGGTAG
65 AGGTTTAAGCCGATGGGCAG
** * ** * * * * * * *
2885390 ATGAAAGATGAAGAAGTCTATCAGGTCTAAGCTGACGGGCAGATGAAAGATGACGAGGTCT-CTC
1 ATGATTGATAAAGAAGTCTCCCAAGTCTAAGCCGACAGGTAGACGAAAGATGAAGAAGTCTCCT-
* * *
2885454 AGGTCTAAGCCGACGGCCAG
65 AGGTTTAAGCCGATGGGCAG
* * * * * * * * *
2885474 ATGATTAATAAAGGAAGTCTCTCGAGACTAAGGCGATAGGCAGATGAAAGATGAAGAAGTCCCCT
1 ATGATTGATAAA-GAAGTCTCCCAAGTCTAAGCCGACAGGTAGACGAAAGATGAAGAAGTCTCCT
* * *
2885539 GGGTCTAAGCCGATGGGTAG
65 AGGTTTAAGCCGATGGGCAG
* * **
2885559 ACGATTGAT-GAGAAGTCTCCCAAGTCTAAGCCGACTA-GTAGACGATTGATG-AGAAGTCTCCT
1 ATGATTGATAAAGAAGTCTCCCAAGTCTAAGCCGAC-AGGTAGACGAAAGATGAAGAAGTCTCCT
* * *
2885621 AAGTTTAAGCCGACT-AGTAG
65 AGGTTTAAGCCGA-TGGGCAG
* * *** * * * * *
2885641 ACGATTGATAAAAGAAATCTCCTGGGACTGAGCTGAC-GGTTAAACGAAAGATAAAGAAGTCTCC
1 ATGATTGAT-AAAGAAGTCTCCCAAGTCTAAGCCGACAGG-TAGACGAAAGATGAAGAAGTCTCC
* * *
2885705 CAGGTTTAAGTCAATGGGCAG
64 TAGGTTTAAGCCGATGGGCAG
* ** * * *** * * * *
2885726 ACGAAAGATGAAGAGGT-TAATAGGTCTAAGCCGACAGGCAGACGAAAGATAAAGAGGTCTCCTA
1 ATGATTGATAAAGAAGTCTCCCAAGTCTAAGCCGACAGGTAGACGAAAGATGAAGAAGTCTCCTA
*
2885790 GGTTTGAGCCGATGGGCAG
66 GGTTTAAGCCGATGGGCAG
* *
2885809 ATGATGGATAAAG-AGTCTCCCAAGTCTAAACCGA
1 ATGATTGATAAAGAAGTCTCCCAAGTCTAAGCCGA
2885843 TGGGTAAATA
Statistics
Matches: 341, Mismatches: 99, Indels: 28
0.73 0.21 0.06
Matches are distributed among these distances:
82 35 0.10
83 104 0.30
84 103 0.30
85 97 0.28
86 2 0.01
ACGTcount: A:0.34, C:0.17, G:0.28, T:0.20
Consensus pattern (84 bp):
ATGATTGATAAAGAAGTCTCCCAAGTCTAAGCCGACAGGTAGACGAAAGATGAAGAAGTCTCCTA
GGTTTAAGCCGATGGGCAG
Found at i:2886173 original size:44 final size:44
Alignment explanation
Indices: 2886122--2886363 Score: 150
Period size: 44 Copynumber: 5.5 Consensus size: 44
2886112 AAATTTGTCT
* *
2886122 AGGGTGGTAACCATATGTCAGATAGAAATGAGGCGGATTTGACC
1 AGGGTGGTAACCATACGTCAGATAGAAATGAAGCGGATTTGACC
* * * * *
2886166 AGGGTGGTAACCATAAGTCAGGCA-AG-AAGGAGGCAGATTTAACC
1 AGGGTGGTAACCATACGTCA-G-ATAGAAATGAAGCGGATTTGACC
* * * ** * *
2886210 ATGATGGTAACCATACGTCAAATCAG-AATGAAAAGAATATGACC
1 AGGGTGGTAACCATACGTCAGAT-AGAAATGAAGCGGATTTGACC
* * * * * * *
2886254 AGGGTCGTAACCATATGTTAGACA-AGAAGGAAGCAGATTTGACA
1 AGGGTGGTAACCATACGTCAGATAGA-AATGAAGCGGATTTGACC
* * * * ** * * *
2886298 AGGGTGATAACCAAACGTCAAATCGAAATGAAAAGAATCTGACT
1 AGGGTGGTAACCATACGTCAGATAGAAATGAAGCGGATTTGACC
2886342 AGGGTGGTAACCATACGTCAGA
1 AGGGTGGTAACCATACGTCAGA
2886364 CTAAAATTAA
Statistics
Matches: 143, Mismatches: 48, Indels: 14
0.70 0.23 0.07
Matches are distributed among these distances:
42 1 0.01
43 1 0.01
44 136 0.95
45 4 0.03
46 1 0.01
ACGTcount: A:0.39, C:0.15, G:0.26, T:0.19
Consensus pattern (44 bp):
AGGGTGGTAACCATACGTCAGATAGAAATGAAGCGGATTTGACC
Found at i:2886257 original size:88 final size:88
Alignment explanation
Indices: 2886161--2886364 Score: 266
Period size: 88 Copynumber: 2.3 Consensus size: 88
2886151 GAGGCGGATT
* * * * * *
2886161 TGACCAGGGTGGTAACCATAAGTCAGGCAAGAAGGAGGCAGATTTAACCATGATGGTAACCATAC
1 TGACCAGGGTGGTAACCATAAGTCAGACAAGAAGGAAGCAGATTTAACAAGGATGATAACCAAAC
2886226 GTCAAATC-AGAATGAAAAGAATA
66 GTCAAATCGA-AATGAAAAGAATA
* * * * *
2886249 TGACCAGGGTCGTAACCATATGTTAGACAAGAAGGAAGCAGATTTGACAAGGGTGATAACCAAAC
1 TGACCAGGGTGGTAACCATAAGTCAGACAAGAAGGAAGCAGATTTAACAAGGATGATAACCAAAC
*
2886314 GTCAAATCGAAATGAAAAGAATC
66 GTCAAATCGAAATGAAAAGAATA
* *
2886337 TGACTAGGGTGGTAACCATACGTCAGAC
1 TGACCAGGGTGGTAACCATAAGTCAGAC
2886365 TAAAATTAAA
Statistics
Matches: 99, Mismatches: 16, Indels: 2
0.85 0.14 0.02
Matches are distributed among these distances:
88 98 0.99
89 1 0.01
ACGTcount: A:0.40, C:0.17, G:0.25, T:0.19
Consensus pattern (88 bp):
TGACCAGGGTGGTAACCATAAGTCAGACAAGAAGGAAGCAGATTTAACAAGGATGATAACCAAAC
GTCAAATCGAAATGAAAAGAATA
Found at i:2886440 original size:48 final size:48
Alignment explanation
Indices: 2886369--2886484 Score: 169
Period size: 48 Copynumber: 2.4 Consensus size: 48
2886359 TCAGACTAAA
*
2886369 ATTAAAAGAGTTTGACCAAGTCCTAACACCAATACAATCAAATGAGGG
1 ATTAAAAAAGTTTGACCAAGTCCTAACACCAATACAATCAAATGAGGG
* *
2886417 ATTAAAAAAGTTTGACCAAGTCCTAACATCAATACAGTCAAATGAGGG
1 ATTAAAAAAGTTTGACCAAGTCCTAACACCAATACAATCAAATGAGGG
** *
2886465 AAGAAAAAGAGTTTAACCAA
1 ATTAAAAA-AGTTTGACCAA
2886485 ATATAGTCAA
Statistics
Matches: 61, Mismatches: 6, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
48 51 0.84
49 10 0.16
ACGTcount: A:0.47, C:0.16, G:0.16, T:0.21
Consensus pattern (48 bp):
ATTAAAAAAGTTTGACCAAGTCCTAACACCAATACAATCAAATGAGGG
Found at i:2886881 original size:92 final size:92
Alignment explanation
Indices: 2886724--2886910 Score: 259
Period size: 92 Copynumber: 2.0 Consensus size: 92
2886714 CTTATGGTCA
* ** *
2886724 TGTAATGCATTAGTACCATCTAGTGGGAGGGAAAAGGGGGTATGATTGGGAATAAGTGGTCAGGA
1 TGTAATGCATCAGTACCATCTAGTGGGAGGGAAAAGGGAATATGATTGGAAATAAGTGGTCAGGA
2886789 TATCCTTGCCCCAAGGAT-TTCGGGCTT
66 TATCCTTGCCCCAAGGATATT-GGGCTT
* ** ** * *
2886816 TGTAATGCATCAGTACCATTTAGTGGTTGGGTGAAGGGAATATTATTGGAAATAAGTGGTTAGGA
1 TGTAATGCATCAGTACCATCTAGTGGGAGGGAAAAGGGAATATGATTGGAAATAAGTGGTCAGGA
2886881 TATCCTTGCCCCAAGGATATTGGGCTT
66 TATCCTTGCCCCAAGGATATTGGGCTT
2886908 TGT
1 TGT
2886911 GATTGATGAC
Statistics
Matches: 83, Mismatches: 11, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
92 81 0.98
93 2 0.02
ACGTcount: A:0.26, C:0.13, G:0.30, T:0.30
Consensus pattern (92 bp):
TGTAATGCATCAGTACCATCTAGTGGGAGGGAAAAGGGAATATGATTGGAAATAAGTGGTCAGGA
TATCCTTGCCCCAAGGATATTGGGCTT
Found at i:2891771 original size:42 final size:42
Alignment explanation
Indices: 2891710--2891834 Score: 169
Period size: 42 Copynumber: 2.9 Consensus size: 42
2891700 TCCATCTTCT
* *
2891710 TCTCTCCTCCTCCAGTCATCCCTCCTCTCTCTATTATCTCTCTTG
1 TCTCTCCTCCT--A-TCATCCCTCCTCTCTCTACTATCTCTCCTG
* *
2891755 TCTCTCCTCCTATCATCCCTCTTATCTCTACTATCTCTCCTG
1 TCTCTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTG
* *
2891797 TCTCTCCTCCTATCATCCCTCCTCTCTCTTCTTTCTCT
1 TCTCTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
2891835 TTGAGGGCTA
Statistics
Matches: 72, Mismatches: 8, Indels: 3
0.87 0.10 0.04
Matches are distributed among these distances:
42 60 0.83
43 1 0.01
45 11 0.15
ACGTcount: A:0.09, C:0.45, G:0.02, T:0.44
Consensus pattern (42 bp):
TCTCTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTG
Found at i:2892256 original size:21 final size:21
Alignment explanation
Indices: 2892230--2892280 Score: 102
Period size: 21 Copynumber: 2.4 Consensus size: 21
2892220 TCCAGTCCAC
2892230 ACAATCAACCACAACCAAGTG
1 ACAATCAACCACAACCAAGTG
2892251 ACAATCAACCACAACCAAGTG
1 ACAATCAACCACAACCAAGTG
2892272 ACAATCAAC
1 ACAATCAAC
2892281 TAAGTGAGGC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.49, C:0.33, G:0.08, T:0.10
Consensus pattern (21 bp):
ACAATCAACCACAACCAAGTG
Found at i:2901384 original size:42 final size:42
Alignment explanation
Indices: 2901329--2901447 Score: 175
Period size: 42 Copynumber: 2.8 Consensus size: 42
2901319 TTCTTCTCTC
* * * *
2901329 CTCCTCTTGTCATCCCTCCTCTCTTTATTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
*
2901371 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
* *
2901413 CTCCTCCTATCATCCCTCCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
2901448 TTGAGGGCTA
Statistics
Matches: 69, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 69 1.00
ACGTcount: A:0.08, C:0.45, G:0.03, T:0.45
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
Found at i:2901388 original size:12 final size:11
Alignment explanation
Indices: 2901362--2901437 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
2901352 TTTATTATCT
*
2901362 CTCCTGTCTCTC
1 CTCCTATCTC-C
2901374 CTCCTATCATCC
1 CTCCTATC-TCC
2901386 CTCCTATCT--
1 CTCCTATCTCC
*
2901395 CTACTATCT--
1 CTCCTATCTCC
*
2901404 CTCCTGTCTCTC
1 CTCCTATCTC-C
2901416 CTCCTATCATCC
1 CTCCTATC-TCC
*
2901428 CTCCTCTCTC
1 CTCCTATCTC
2901438 TTCTTTCTCT
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 3 0.06
12 31 0.58
13 4 0.08
ACGTcount: A:0.09, C:0.49, G:0.03, T:0.39
Consensus pattern (11 bp):
CTCCTATCTCC
Found at i:2903959 original size:120 final size:117
Alignment explanation
Indices: 2903751--2903966 Score: 258
Period size: 120 Copynumber: 1.8 Consensus size: 117
2903741 TGTATCAATG
* *
2903751 ATGGATGAACTTTGATTCTAAGAAAAATGGAACCAAAGCATTTCCTATGACACGAAAGCATCAAT
1 ATGGATGAACTTTGATTCTAAGAAAAATGGAACAAAAGCATTTCCTATGACACCAAAGCATCAAT
* * * * *
2903816 ATCTTGTGTTCTAATGGGTAAAATGAGTTTATGATGGTCAATCACAAAAAAA
66 ATCGTATATCCTAATAGGTAAAATGAGTTTATGATGGTCAATCACAAAAAAA
* * *
2903868 ATGGATGAACTTTGATTCTAAGGAAAAAGGTGGAAAGAAAAGC-TTTCCTGTGGA-ACCCAAGCA
1 ATGGATGAACTTTGATTCTAA-GAAAAA--TGG-AACAAAAGCATTTCCTAT-GACACCAAAGCA
*
2903931 TCAATATCGTATATCCTAATAAGG-AAAATGTGTTTA
61 TCAATATCGTATATCCTAAT-AGGTAAAATGAGTTTA
2903967 AGGTACCCCC
Statistics
Matches: 82, Mismatches: 11, Indels: 9
0.80 0.11 0.09
Matches are distributed among these distances:
117 21 0.26
118 6 0.07
120 44 0.54
121 11 0.13
ACGTcount: A:0.39, C:0.13, G:0.19, T:0.28
Consensus pattern (117 bp):
ATGGATGAACTTTGATTCTAAGAAAAATGGAACAAAAGCATTTCCTATGACACCAAAGCATCAAT
ATCGTATATCCTAATAGGTAAAATGAGTTTATGATGGTCAATCACAAAAAAA
Found at i:2906748 original size:12 final size:11
Alignment explanation
Indices: 2906729--2906804 Score: 70
Period size: 12 Copynumber: 6.9 Consensus size: 11
2906719 AGAGAAAGAA
2906729 GAGATAGGAGG
1 GAGATAGGAGG
2906740 GATGATAGGAGG
1 GA-GATAGGAGG
2906752 AGAGATAGGA--
1 -GAGATAGGAGG
*
2906762 GAGATAGTA--
1 GAGATAGGAGG
*
2906771 GAGATAGGCGG
1 GAGATAGGAGG
2906782 GATGATAGGAGG
1 GA-GATAGGAGG
2906794 AGAGATAGGAG
1 -GAGATAGGAG
2906805 AGATAATGAG
Statistics
Matches: 55, Mismatches: 4, Indels: 11
0.79 0.06 0.16
Matches are distributed among these distances:
9 15 0.27
11 4 0.07
12 32 0.58
13 4 0.07
ACGTcount: A:0.38, C:0.01, G:0.47, T:0.13
Consensus pattern (11 bp):
GAGATAGGAGG
Found at i:2906763 original size:9 final size:9
Alignment explanation
Indices: 2906749--2906809 Score: 56
Period size: 9 Copynumber: 7.1 Consensus size: 9
2906739 GGATGATAGG
2906749 AGGAGAGAT
1 AGGAGAGAT
2906758 AGGAGAGAT
1 AGGAGAGAT
*
2906767 AGTAGAGAT
1 AGGAGAGAT
* *
2906776 AGGCGGGAT
1 AGGAGAGAT
* *
2906785 --GATAG-G
1 AGGAGAGAT
2906791 AGGAGAGAT
1 AGGAGAGAT
2906800 AGGAGAGAT
1 AGGAGAGAT
2906809 A
1 A
2906810 ATGAGAGAGG
Statistics
Matches: 39, Mismatches: 10, Indels: 6
0.71 0.18 0.11
Matches are distributed among these distances:
7 2 0.05
8 4 0.10
9 33 0.85
ACGTcount: A:0.41, C:0.02, G:0.44, T:0.13
Consensus pattern (9 bp):
AGGAGAGAT
Found at i:2906778 original size:42 final size:42
Alignment explanation
Indices: 2906719--2906836 Score: 175
Period size: 42 Copynumber: 2.8 Consensus size: 42
2906709 TAGCCCTCAA
* *
2906719 AGAGAAAGAAGAGATAGGAGGGATGATAGGAGGAGAGATAGG
1 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGATAGG
*
2906761 AGAGATAGTAGAGATAGGCGGGATGATAGGAGGAGAGATAGG
1 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGATAGG
* * *
2906803 AGAGATAAT-GAGAGAGGAGGGATGACAGGAGGAG
1 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAG
2906837 GAGAGAAGAA
Statistics
Matches: 69, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
41 22 0.32
42 47 0.68
ACGTcount: A:0.42, C:0.02, G:0.46, T:0.11
Consensus pattern (42 bp):
AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGATAGG
Found at i:2911470 original size:46 final size:46
Alignment explanation
Indices: 2911403--2911495 Score: 150
Period size: 46 Copynumber: 2.0 Consensus size: 46
2911393 TTGTCCTCGT
* * *
2911403 TTAATTTACACGTTAAAGTAAATGCGAGTAAATATGGCTCATTGAC
1 TTAATTTACACGTTAAAGTAAATGAGAGCAAACATGGCTCATTGAC
*
2911449 TTAATTTACATGTTAAAGTAAATGAGAGCAAACATGGCTCATTGAC
1 TTAATTTACACGTTAAAGTAAATGAGAGCAAACATGGCTCATTGAC
2911495 T
1 T
2911496 ACTTGTGTTT
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 43 1.00
ACGTcount: A:0.38, C:0.13, G:0.17, T:0.32
Consensus pattern (46 bp):
TTAATTTACACGTTAAAGTAAATGAGAGCAAACATGGCTCATTGAC
Found at i:2914770 original size:33 final size:33
Alignment explanation
Indices: 2914728--2914804 Score: 136
Period size: 33 Copynumber: 2.3 Consensus size: 33
2914718 ATCATTATTA
2914728 TGTCATTAATTCCCAAATCAGAAATTCTGATTG
1 TGTCATTAATTCCCAAATCAGAAATTCTGATTG
* *
2914761 TGTCATTAATTCCCAACTTAGAAATTCTGATTG
1 TGTCATTAATTCCCAAATCAGAAATTCTGATTG
2914794 TGTCATTAATT
1 TGTCATTAATT
2914805 TTCAAATCCC
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 42 1.00
ACGTcount: A:0.31, C:0.17, G:0.12, T:0.40
Consensus pattern (33 bp):
TGTCATTAATTCCCAAATCAGAAATTCTGATTG
Found at i:2915477 original size:12 final size:12
Alignment explanation
Indices: 2915459--2915493 Score: 54
Period size: 12 Copynumber: 2.9 Consensus size: 12
2915449 AGAAAGAAGA
2915459 AGAGATAGGAGG
1 AGAGATAGGAGG
2915471 -GATGATAGGAGG
1 AGA-GATAGGAGG
2915483 AGAGATAGGAG
1 AGAGATAGGAG
2915494 AGATAATAGA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
11 2 0.10
12 17 0.81
13 2 0.10
ACGTcount: A:0.40, C:0.00, G:0.49, T:0.11
Consensus pattern (12 bp):
AGAGATAGGAGG
Found at i:2915502 original size:12 final size:12
Alignment explanation
Indices: 2915462--2915507 Score: 51
Period size: 12 Copynumber: 3.9 Consensus size: 12
2915452 AAGAAGAAGA
*
2915462 GATAGGAGGGAT
1 GATAGGAGAGAT
2915474 GATAGGAGGAGA-
1 GATAGGA-GAGAT
2915486 GATAGGAGAGAT
1 GATAGGAGAGAT
*
2915498 AATA-GAGAGA
1 GATAGGAGAGA
2915508 GGAGGGATGA
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
11 10 0.33
12 17 0.57
13 3 0.10
ACGTcount: A:0.43, C:0.00, G:0.43, T:0.13
Consensus pattern (12 bp):
GATAGGAGAGAT
Found at i:2917130 original size:8 final size:8
Alignment explanation
Indices: 2917113--2917141 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
2917103 TTCCATCTTC
2917113 AAAAAA-A
1 AAAAAAGA
2917120 AAAAAAGA
1 AAAAAAGA
2917128 AAAAAAGA
1 AAAAAAGA
2917136 AAAAAA
1 AAAAAA
2917142 AAGGGAAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
7 6 0.29
8 15 0.71
ACGTcount: A:0.93, C:0.00, G:0.07, T:0.00
Consensus pattern (8 bp):
AAAAAAGA
Found at i:2917132 original size:12 final size:12
Alignment explanation
Indices: 2917113--2917154 Score: 50
Period size: 12 Copynumber: 3.6 Consensus size: 12
2917103 TTCCATCTTC
2917113 AAAAAAAAAA-A
1 AAAAAAAAAAGA
*
2917124 AAGAAAAAAAGA
1 AAAAAAAAAAGA
**
2917136 AAAAAAAAGGGA
1 AAAAAAAAAAGA
2917148 AAAAAAA
1 AAAAAAA
2917155 GATAGTTACT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
11 9 0.35
12 17 0.65
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (12 bp):
AAAAAAAAAAGA
Found at i:2917140 original size:20 final size:20
Alignment explanation
Indices: 2917115--2917153 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
2917105 CCATCTTCAA
2917115 AAAAAAAAAAAGAAAAAAAG
1 AAAAAAAAAAAGAAAAAAAG
**
2917135 AAAAAAAAAGGGAAAAAAA
1 AAAAAAAAAAAGAAAAAAA
2917154 AGATAGTTAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00
Consensus pattern (20 bp):
AAAAAAAAAAAGAAAAAAAG
Found at i:2917150 original size:18 final size:17
Alignment explanation
Indices: 2917113--2917154 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 17
2917103 TTCCATCTTC
2917113 AAAAAAAAAAAAAGAAA
1 AAAAAAAAAAAAAGAAA
2917130 AAAAGAAAAAAAAAGGGAAA
1 AAAA-AAAAAAAAA--GAAA
2917150 AAAAA
1 AAAAA
2917155 GATAGTTACT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
17 4 0.18
18 9 0.41
19 1 0.05
20 8 0.36
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (17 bp):
AAAAAAAAAAAAAGAAA
Found at i:2917280 original size:28 final size:29
Alignment explanation
Indices: 2917211--2917282 Score: 87
Period size: 28 Copynumber: 2.6 Consensus size: 29
2917201 TTCTTCTTCA
*
2917211 TTGATTTCTTTTCCTTTGCAATTTCTTGC
1 TTGATTTCATTTCCTTTGCAATTTCTTGC
*
2917240 TT-ATTTCGTTTCCTTT-CATATTTCTTG-
1 TTGATTTCATTTCCTTTGCA-ATTTCTTGC
*
2917267 TTGATTTCACTTCCTT
1 TTGATTTCATTTCCTT
2917283 GATCTTTTTT
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
27 4 0.11
28 32 0.84
29 2 0.05
ACGTcount: A:0.11, C:0.21, G:0.08, T:0.60
Consensus pattern (29 bp):
TTGATTTCATTTCCTTTGCAATTTCTTGC
Found at i:2918968 original size:173 final size:174
Alignment explanation
Indices: 2918676--2919024 Score: 673
Period size: 173 Copynumber: 2.0 Consensus size: 174
2918666 ACAACGTGAG
2918676 CACCTCTTTCATACTAGGTGCCATGTAAATAACAACGTGTGTAGAATGATTATTGATAGTGGTAG
1 CACCTCTTTCATACTAGGTGCCATGTAAAT-A-AACGTGTGTAGAATGATTATTGATAGTGGTAG
2918741 TTGCACTAATGTTGCTAGTACTTTGATGGTTGAAAAGCTAAATCTGCCCACATTAAAGCATCCAA
64 TTGCACTAATGTTGCTAGTACTTTGATGGTTGAAAAGCTAAATCTGCCCACATTAAAGCATCCAA
2918806 GACCGTATAAGCTGCAATGGTTGAATGATTGTGGAGAAGTTAAGGT
129 GACCGTATAAGCTGCAATGGTTGAATGATTGTGGAGAAGTTAAGGT
2918852 CACCTCTTTCATACTAGGTGCCATGTAAAT-AACGTGTGTAGAATGATTATTGATAGTGGTAGTT
1 CACCTCTTTCATACTAGGTGCCATGTAAATAAACGTGTGTAGAATGATTATTGATAGTGGTAGTT
2918916 GCACTAATGTTGCTAGTACTTTGATGGTTGAAAAGCTAAATCTGCCCACATTAAAGCATCCAAGA
66 GCACTAATGTTGCTAGTACTTTGATGGTTGAAAAGCTAAATCTGCCCACATTAAAGCATCCAAGA
2918981 CCGTATAAGCTGCAATGGTTGAATGATTGTGGAGAAGTTAAGGT
131 CCGTATAAGCTGCAATGGTTGAATGATTGTGGAGAAGTTAAGGT
2919025 GACAACGCAA
Statistics
Matches: 173, Mismatches: 0, Indels: 3
0.98 0.00 0.02
Matches are distributed among these distances:
173 143 0.83
176 30 0.17
ACGTcount: A:0.31, C:0.15, G:0.23, T:0.31
Consensus pattern (174 bp):
CACCTCTTTCATACTAGGTGCCATGTAAATAAACGTGTGTAGAATGATTATTGATAGTGGTAGTT
GCACTAATGTTGCTAGTACTTTGATGGTTGAAAAGCTAAATCTGCCCACATTAAAGCATCCAAGA
CCGTATAAGCTGCAATGGTTGAATGATTGTGGAGAAGTTAAGGT
Found at i:2919610 original size:25 final size:25
Alignment explanation
Indices: 2919582--2919631 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
2919572 GGTTCCAAGC
2919582 TTTTGCCATAGGGTCCACCAGAAGT
1 TTTTGCCATAGGGTCCACCAGAAGT
2919607 TTTTGCCATAGGGTCCACCAGAAGT
1 TTTTGCCATAGGGTCCACCAGAAGT
2919632 GACTCAGAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.24, C:0.24, G:0.24, T:0.28
Consensus pattern (25 bp):
TTTTGCCATAGGGTCCACCAGAAGT
Found at i:2921839 original size:15 final size:15
Alignment explanation
Indices: 2921819--2921865 Score: 94
Period size: 15 Copynumber: 3.1 Consensus size: 15
2921809 GCCTCCAAAC
2921819 TCACTTTTTTCCTCT
1 TCACTTTTTTCCTCT
2921834 TCACTTTTTTCCTCT
1 TCACTTTTTTCCTCT
2921849 TCACTTTTTTCCTCT
1 TCACTTTTTTCCTCT
2921864 TC
1 TC
2921866 TCAACCTTAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 32 1.00
ACGTcount: A:0.06, C:0.34, G:0.00, T:0.60
Consensus pattern (15 bp):
TCACTTTTTTCCTCT
Found at i:2927187 original size:42 final size:42
Alignment explanation
Indices: 2927132--2927250 Score: 193
Period size: 42 Copynumber: 2.8 Consensus size: 42
2927122 TTCTTCTCTC
* *
2927132 CTCCTCCTGTCATCCCTCCTCTCTCTATTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
*
2927174 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
* *
2927216 CTCCTCCTATCATCCCTCCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
2927251 TTGAGGGCTA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 71 1.00
ACGTcount: A:0.08, C:0.46, G:0.03, T:0.43
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
Found at i:2927191 original size:12 final size:11
Alignment explanation
Indices: 2927165--2927240 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
2927155 TCTATTATCT
*
2927165 CTCCTGTCTCTC
1 CTCCTATCTC-C
2927177 CTCCTATCATCC
1 CTCCTATC-TCC
2927189 CTCCTATCT--
1 CTCCTATCTCC
*
2927198 CTACTATCT--
1 CTCCTATCTCC
*
2927207 CTCCTGTCTCTC
1 CTCCTATCTC-C
2927219 CTCCTATCATCC
1 CTCCTATC-TCC
*
2927231 CTCCTCTCTC
1 CTCCTATCTC
2927241 TTCTTTCTCT
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 3 0.06
12 31 0.58
13 4 0.08
ACGTcount: A:0.09, C:0.49, G:0.03, T:0.39
Consensus pattern (11 bp):
CTCCTATCTCC
Found at i:2927192 original size:24 final size:24
Alignment explanation
Indices: 2927156--2927241 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
2927146 CCTCCTCTCT
* *
2927156 CTATTATCTCTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
* *
2927180 CTATCATCCCTCC--TATCT-CTA
1 CTATCATCCCTCCTGTCTCTCCTC
2927201 CTATC-T--CTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
*
2927222 CTATCATCCCTCCTCTCTCT
1 CTATCATCCCTCCTGTCTCT
2927242 TCTTTCTCTT
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 4 0.08
20 5 0.10
21 14 0.29
22 5 0.10
24 21 0.43
ACGTcount: A:0.10, C:0.45, G:0.02, T:0.42
Consensus pattern (24 bp):
CTATCATCCCTCCTGTCTCTCCTC
Found at i:2927216 original size:18 final size:18
Alignment explanation
Indices: 2927147--2927217 Score: 52
Period size: 18 Copynumber: 3.6 Consensus size: 18
2927137 CCTGTCATCC
* *
2927147 CTCCTCTCTCTATTATCT
1 CTCCTGTCTCTACTATCT
*
2927165 CTCCTGTCTCTCCTCCTATCAT
1 CTCCTG--TCT-CTACTATC-T
*
2927187 CCCTCCTATCTCTACTATCT
1 --CTCCTGTCTCTACTATCT
2927207 CTCCTGTCTCT
1 CTCCTGTCTCT
2927218 CCTCCTATCA
Statistics
Matches: 41, Mismatches: 6, Indels: 12
0.69 0.10 0.20
Matches are distributed among these distances:
18 15 0.37
20 4 0.10
21 13 0.32
22 4 0.10
24 5 0.12
ACGTcount: A:0.10, C:0.44, G:0.03, T:0.44
Consensus pattern (18 bp):
CTCCTGTCTCTACTATCT
Found at i:2932535 original size:18 final size:19
Alignment explanation
Indices: 2932493--2932542 Score: 52
Period size: 18 Copynumber: 2.7 Consensus size: 19
2932483 TCCATCTTCT
2932493 TCTCTCCTC-CTCTTGTCA
1 TCTCTCCTCTCTCTTGTCA
*
2932511 TCCCTCCTCTCTCTAT-T-A
1 TCTCTCCTCTCTCT-TGTCA
*
2932529 TCTCTCCTGTCTCT
1 TCTCTCCTCTCTCT
2932543 CCTCCTATCA
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
18 21 0.78
19 5 0.19
20 1 0.04
ACGTcount: A:0.06, C:0.44, G:0.04, T:0.46
Consensus pattern (19 bp):
TCTCTCCTCTCTCTTGTCA
Found at i:2932554 original size:42 final size:42
Alignment explanation
Indices: 2932499--2932617 Score: 184
Period size: 42 Copynumber: 2.8 Consensus size: 42
2932489 TTCTTCTCTC
* * *
2932499 CTCCTCTTGTCATCCCTCCTCTCTCTATTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
*
2932541 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
* *
2932583 CTCCTCCTATCATCCCTCCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
2932618 TTGAGGGCTA
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 70 1.00
ACGTcount: A:0.08, C:0.45, G:0.03, T:0.44
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
Found at i:2932558 original size:12 final size:11
Alignment explanation
Indices: 2932532--2932607 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
2932522 TCTATTATCT
*
2932532 CTCCTGTCTCTC
1 CTCCTATCTC-C
2932544 CTCCTATCATCC
1 CTCCTATC-TCC
2932556 CTCCTATCT--
1 CTCCTATCTCC
*
2932565 CTACTATCT--
1 CTCCTATCTCC
*
2932574 CTCCTGTCTCTC
1 CTCCTATCTC-C
2932586 CTCCTATCATCC
1 CTCCTATC-TCC
*
2932598 CTCCTCTCTC
1 CTCCTATCTC
2932608 TTCTTTCTCT
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 3 0.06
12 31 0.58
13 4 0.08
ACGTcount: A:0.09, C:0.49, G:0.03, T:0.39
Consensus pattern (11 bp):
CTCCTATCTCC
Found at i:2932559 original size:24 final size:24
Alignment explanation
Indices: 2932523--2932608 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
2932513 CCTCCTCTCT
* *
2932523 CTATTATCTCTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
* *
2932547 CTATCATCCCTCC--TATCT-CTA
1 CTATCATCCCTCCTGTCTCTCCTC
2932568 CTATC-T--CTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
*
2932589 CTATCATCCCTCCTCTCTCT
1 CTATCATCCCTCCTGTCTCT
2932609 TCTTTCTCTT
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 4 0.08
20 5 0.10
21 14 0.29
22 5 0.10
24 21 0.43
ACGTcount: A:0.10, C:0.45, G:0.02, T:0.42
Consensus pattern (24 bp):
CTATCATCCCTCCTGTCTCTCCTC
Found at i:2932583 original size:18 final size:18
Alignment explanation
Indices: 2932514--2932584 Score: 52
Period size: 18 Copynumber: 3.6 Consensus size: 18
2932504 CTTGTCATCC
* *
2932514 CTCCTCTCTCTATTATCT
1 CTCCTGTCTCTACTATCT
*
2932532 CTCCTGTCTCTCCTCCTATCAT
1 CTCCTG--TCT-CTACTATC-T
*
2932554 CCCTCCTATCTCTACTATCT
1 --CTCCTGTCTCTACTATCT
2932574 CTCCTGTCTCT
1 CTCCTGTCTCT
2932585 CCTCCTATCA
Statistics
Matches: 41, Mismatches: 6, Indels: 12
0.69 0.10 0.20
Matches are distributed among these distances:
18 15 0.37
20 4 0.10
21 13 0.32
22 4 0.10
24 5 0.12
ACGTcount: A:0.10, C:0.44, G:0.03, T:0.44
Consensus pattern (18 bp):
CTCCTGTCTCTACTATCT
Found at i:2934729 original size:23 final size:22
Alignment explanation
Indices: 2934699--2934747 Score: 62
Period size: 23 Copynumber: 2.2 Consensus size: 22
2934689 CAAATGCTGG
2934699 CTTTTTTTCTCTCTTTTGTATT
1 CTTTTTTTCTCTCTTTTGTATT
* * *
2934721 CTTTCTTTTTTTTTTTTTGTATT
1 CTTT-TTTTCTCTCTTTTGTATT
2934744 CTTT
1 CTTT
2934748 AAAAAAAATA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
22 4 0.17
23 19 0.83
ACGTcount: A:0.04, C:0.14, G:0.04, T:0.78
Consensus pattern (22 bp):
CTTTTTTTCTCTCTTTTGTATT
Found at i:2935909 original size:15 final size:14
Alignment explanation
Indices: 2935889--2935920 Score: 55
Period size: 15 Copynumber: 2.2 Consensus size: 14
2935879 TGGTTGTCAT
2935889 CAATTGGTATCAGTG
1 CAATTGGTATCAG-G
2935904 CAATTGGTATCAGG
1 CAATTGGTATCAGG
2935918 CAA
1 CAA
2935921 CCAAGGAAGG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.24
15 13 0.76
ACGTcount: A:0.31, C:0.16, G:0.25, T:0.28
Consensus pattern (14 bp):
CAATTGGTATCAGG
Found at i:2936404 original size:718 final size:715
Alignment explanation
Indices: 2935202--2936606 Score: 2666
Period size: 718 Copynumber: 2.0 Consensus size: 715
2935192 GGTTGATGAA
*
2935202 AACCAAGGAAGGTCCATTGAAGACAAAGACCTGAAGGCGTTGGAAGGATTTCAAGGACCAATAAC
1 AACCAAGGAAGGTCCATTGAAGACAAAGACCTGAAGGCATTGGAAGGATTTCAAGGACCAATAAC
2935267 GAGGGCAAAGGCAAAGAGGATAAAGGAAGACCTAGAGAAGATGGTTGCTGGCCTATTTGAAAGTA
66 GAGGGCAAAGGCAAAGAGGATAAAGGAAGACCTAGAGAAGATGGTTGCTGGCCTATTTGAAAGTA
*
2935332 AACCCAATTTGGAGTTAGAAGAGCCCAAGCTAGTTAATTGCATATATTTGGAAGATATGGGCTCC
131 AACCCAATCTGGAGTTAGAAGAGCCCAAGCTAGTTAATTGCATATATTTGGAAGATATGGGCTCC
*
2935397 AATGGATTGAATTAGGACTTGGGTTATTTTGTAATAAGGGCCTGCTGGTTGTGACTTGCTTTGGG
196 AATGGATTCAATTAGGACTTGGGTTATTTTGTAATAAGGGCCTGCTGGTTGTGACTTGCTTTGGG
*
2935462 CTTTATTTAGCATAAAAACTTGTTATTTGGGTTTAAGTAAGAGTTGGGCTAGTTAGCATAATAAG
261 CTTTATTTAGCATAAAAACTTGTTATTTGGGTTTAAGTAAGAGTTGGGCTAGTTAGCATAATAAA
*
2935527 CCCCTTAGGGTTTGTGTTATCTATGACTTATGAGGGCATATATAAGCTCTTGTAAACAGATTTAG
326 CCCCTTAGGGTTTGTGTTAACTATGACTTATGAGGGCATATATAAGCTCTTGTAAACAGATTTAG
2935592 AGGGGGCAGACATTCATATTTGCAGATTAAACACATTTTTGTGTGAGAGTGATTCTTAGGTTCTT
391 AGGGGGCAGACATTCATATTTGCAGATTAAACACATTTTTGTGTGAGAGTGATTCTTAGGTTCTT
2935657 GAGTGAGCCAATTTTTCTGGATCTTATCAAGAGGCCAAGACTCTTGTGGCGATCATTCCTTTTGG
456 GAGTGAGCCAATTTTTCTGGATCTTATCAAGAGGCCAAGACTCTTGTGGCGATCATTCCTTTTGG
*
2935722 CTTATCAGTCTTGTGATTGTGGCGCCATCCTCCATCTCTAATTCTATTCCATTTTGTTATTTTTT
521 CTTATCAATCTTGTGATTGTGGCGCCATCCTCCATCTCTAA-TCTATTCCATTTTGTTA-TTTTT
2935787 TTCTGCTTCTTTCAATTTCTGTTCTTGCATCAATAATTCTGTTTATTGTTAGAAATCCATCTCAA
584 TTCTGCTTCTTTCAATTTCTGTTCTTGCATCAATAATTCTGTTTATTGTTAGAAATCCATCTCAA
2935852 GATCATTATTTAGGCAACCTTGGTTCATGGTTGTCATCAATTGGTATCAGTGCAATTGGTATCAG
649 GATCATTATTTAGGCAACCTTGGTTCATGGTTGTCATCAATTGGTATCAGTGCAATTGGTATCAG
2935917 GC
714 GC
2935919 AACCAAGGAAGGTCCATTGAAGACAAAGACCTGAAGGCATTGGAAGGATTTCAAGGACCAATAAC
1 AACCAAGGAAGGTCCATTGAAGACAAAGACCTGAAGGCATTGGAAGGATTTCAAGGACCAATAAC
2935984 GAGGGCAAAGGCAAAGAGGATAAAGGAAGACCTAGAGAAGATGGTTGCTGGCCTATTTGAAAGTA
66 GAGGGCAAAGGCAAAGAGGATAAAGGAAGACCTAGAGAAGATGGTTGCTGGCCTATTTGAAAGTA
*
2936049 GACCCAATCTGGAGTTAGAAGAGCCCAAGCTAGTTAATTGCATATATTTGGAAGATATGGGCTCC
131 AACCCAATCTGGAGTTAGAAGAGCCCAAGCTAGTTAATTGCATATATTTGGAAGATATGGGCTCC
2936114 AATGGATTCAATTAGGACTTGGGTTATTTTGTAATAAAGGGCCTGCTGGTTGTGACTTGCTTTGG
196 AATGGATTCAATTAGGACTTGGGTTATTTTGTAAT-AAGGGCCTGCTGGTTGTGACTTGCTTTGG
* *
2936179 GCTTTATTTAGCATAGAAACTTGTTATTTGGGTTTAAGTAAGAGTTGGGCTTGTTAGCATAATAA
260 GCTTTATTTAGCATAAAAACTTGTTATTTGGGTTTAAGTAAGAGTTGGGCTAGTTAGCATAATAA
* *
2936244 ACCCCTTAGGGTTTGTGTTAACTATGGCTTATGAGGGCATATATAAGCTCTTGTAAACAGATTTG
325 ACCCCTTAGGGTTTGTGTTAACTATGACTTATGAGGGCATATATAAGCTCTTGTAAACAGATTTA
2936309 GAGGGGGCAGACATTCATATTTGCAGATTAAACACATTTTTGTGTGAGAGTGATTCTTAGGTTCT
390 GAGGGGGCAGACATTCATATTTGCAGATTAAACACATTTTTGTGTGAGAGTGATTCTTAGGTTCT
*
2936374 TGAGTGAGCCAATTTTTCTGGATTTTATCAAGAGGCCAAGACTCTTGTGGCGATCATTCCTTTTG
455 TGAGTGAGCCAATTTTTCTGGATCTTATCAAGAGGCCAAGACTCTTGTGGCGATCATTCCTTTTG
*
2936439 GCTTATCAATCTTGTGATTGTGGCGCCATCCTTCATCTCTAATCTATTCCATTTTGTTATTTTTT
520 GCTTATCAATCTTGTGATTGTGGCGCCATCCTCCATCTCTAATCTATTCCATTTTGTTATTTTTT
2936504 TCTGCTTCTTTCAATTTCTGTTCTTGCATCAATAATTCTGTTTATTGTTAGAAATCCATCTCAAG
585 TCTGCTTCTTTCAATTTCTGTTCTTGCATCAATAATTCTGTTTATTGTTAGAAATCCATCTCAAG
2936569 ATCATTATTTAGGCAACCTTGGTTCATGGTTGTCATCA
650 ATCATTATTTAGGCAACCTTGGTTCATGGTTGTCATCA
2936607 GTTTCCAATG
Statistics
Matches: 674, Mismatches: 13, Indels: 3
0.98 0.02 0.00
Matches are distributed among these distances:
716 109 0.16
717 243 0.36
718 322 0.48
ACGTcount: A:0.27, C:0.16, G:0.23, T:0.34
Consensus pattern (715 bp):
AACCAAGGAAGGTCCATTGAAGACAAAGACCTGAAGGCATTGGAAGGATTTCAAGGACCAATAAC
GAGGGCAAAGGCAAAGAGGATAAAGGAAGACCTAGAGAAGATGGTTGCTGGCCTATTTGAAAGTA
AACCCAATCTGGAGTTAGAAGAGCCCAAGCTAGTTAATTGCATATATTTGGAAGATATGGGCTCC
AATGGATTCAATTAGGACTTGGGTTATTTTGTAATAAGGGCCTGCTGGTTGTGACTTGCTTTGGG
CTTTATTTAGCATAAAAACTTGTTATTTGGGTTTAAGTAAGAGTTGGGCTAGTTAGCATAATAAA
CCCCTTAGGGTTTGTGTTAACTATGACTTATGAGGGCATATATAAGCTCTTGTAAACAGATTTAG
AGGGGGCAGACATTCATATTTGCAGATTAAACACATTTTTGTGTGAGAGTGATTCTTAGGTTCTT
GAGTGAGCCAATTTTTCTGGATCTTATCAAGAGGCCAAGACTCTTGTGGCGATCATTCCTTTTGG
CTTATCAATCTTGTGATTGTGGCGCCATCCTCCATCTCTAATCTATTCCATTTTGTTATTTTTTT
CTGCTTCTTTCAATTTCTGTTCTTGCATCAATAATTCTGTTTATTGTTAGAAATCCATCTCAAGA
TCATTATTTAGGCAACCTTGGTTCATGGTTGTCATCAATTGGTATCAGTGCAATTGGTATCAGGC
Found at i:2937799 original size:155 final size:156
Alignment explanation
Indices: 2937551--2937922 Score: 507
Period size: 155 Copynumber: 2.4 Consensus size: 156
2937541 AAACACGATC
* * * *
2937551 TGATGCTTTGGTTTCATAGGAA-AAGCTTTGCTTTCCACCATTTTCCTTAGAATCAAAGTTAATT
1 TGATGCTTTGGTTT--T-GTAAGAAGCTTT-TTTTCCACCATTTTTCTTAGAATCAAAGTTAATC
* *
2937615 CGTTAATCGAGACAAACATGGATCCTCATGGTAATCACCACTCTATTCTTGATTGGGCACCATAA
62 CATTAACCGAGACAAACATGGATCCTCATGGTAATCACCACTCTATTCTTGATTGGGCACCATAA
*
2937680 ACACTTTTTCC-CATTGGGACACACAATAT
127 ACACATTTTCCTCATTGGGACACACAATAT
* *
2937709 TGATGCTTT-ATGTTTGTAAGAAGCTTTTTTTCCACCATTTTTCTTAGAATCAAAGTTTATCCAT
1 TGATGCTTTGGT-TTTGTAAGAAGCTTTTTTTCCACCATTTTTCTTAGAATCAAAGTTAATCCAT
* * ** * *
2937773 TAGCCGAGATAAACATGGATTGTCATGGTAATCACCGCTCTATTCTTGTTTGGGCACCATAAACA
65 TAACCGAGACAAACATGGATCCTCATGGTAATCACCACTCTATTCTTGATTGGGCACCATAAACA
*
2937838 CATTTTCCTCATTGGGACACACGATAT
130 CATTTTCCTCATTGGGACACACAATAT
* *
2937865 TGATGCTTTGGTTTTGTAAGAAGCTTTTCTTTCCCCCATTTTTCCTAGAATCAAAGTT
1 TGATGCTTTGGTTTTGTAAGAAGCTTTT-TTTCCACCATTTTTCTTAGAATCAAAGTT
2937923 CGTCTCTCAA
Statistics
Matches: 190, Mismatches: 19, Indels: 11
0.86 0.09 0.05
Matches are distributed among these distances:
155 100 0.53
156 50 0.26
157 29 0.15
158 11 0.06
ACGTcount: A:0.27, C:0.21, G:0.16, T:0.37
Consensus pattern (156 bp):
TGATGCTTTGGTTTTGTAAGAAGCTTTTTTTCCACCATTTTTCTTAGAATCAAAGTTAATCCATT
AACCGAGACAAACATGGATCCTCATGGTAATCACCACTCTATTCTTGATTGGGCACCATAAACAC
ATTTTCCTCATTGGGACACACAATAT
Found at i:2939528 original size:157 final size:159
Alignment explanation
Indices: 2939341--2939625 Score: 493
Period size: 157 Copynumber: 1.8 Consensus size: 159
2939331 CATGATTAGA
* *
2939341 CAACAAAAACAAATATTCCTCATTGGGATACAGGATATTGATGCTTTGGTTTTGCAAGAAAAGCT
1 CAACAAAAACAAATATGCCTCATTGGGATACAGGATATTGATGCTTTGGTTTCGCAAGAAAAGCT
* *
2939406 TGATCATTTTGGCATTCTCCTTAGAATCAATGTTCATCTATCAAATAAAACTATATGGATTCTTA
66 TGATCATTTTCGCATTCTCCTTAGAATCAATGTTCATCCATCAAATAAAACTATATGGATTCTTA
2939471 GAATAATCTCCATTCTTTTCGTTACTCAG
131 GAATAATCTCCATTCTTTTCGTTACTCAG
*
2939500 CAACAAAAA-AAA-ATGCCTCATTGGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAAGCT
1 CAACAAAAACAAATATGCCTCATTGGGATACAGGATATTGATGCTTTGGTTTCGCAAGAAAAGCT
* *
2939563 TGATTATTTTCGCATTCTCCTTAGAATCAATGTTCATCCATCAAATAAAACTATATTGATTCT
66 TGATCATTTTCGCATTCTCCTTAGAATCAATGTTCATCCATCAAATAAAACTATATGGATTCT
2939626 CACAATGATC
Statistics
Matches: 119, Mismatches: 7, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
157 107 0.90
158 3 0.03
159 9 0.08
ACGTcount: A:0.34, C:0.18, G:0.14, T:0.35
Consensus pattern (159 bp):
CAACAAAAACAAATATGCCTCATTGGGATACAGGATATTGATGCTTTGGTTTCGCAAGAAAAGCT
TGATCATTTTCGCATTCTCCTTAGAATCAATGTTCATCCATCAAATAAAACTATATGGATTCTTA
GAATAATCTCCATTCTTTTCGTTACTCAG
Found at i:2940490 original size:158 final size:159
Alignment explanation
Indices: 2940310--2940698 Score: 404
Period size: 159 Copynumber: 2.5 Consensus size: 159
2940300 GTTTTCCACC
* * *
2940310 TTGGGATACACAATTTTGATGCTTTGA-ATTTGCAAG-AAAGCTT-TTC-TTTCTACCATAT-TC
1 TTGGGATACACGATATTGATGCTTTGAGATTTGCAAGAAAAGCTTGATCATTT-TACCAT-TCTC
* * **
2940370 CTTAGAATCAAAGTTCGTCCCTCAAATGAGATAA-ATATGAATTGACAAAATAATCTCCATT-TT
64 CTTAGAATCAAAGTTCATCCATCAAAT-A-A-AACATATGAATACACAAAATAATCTCCATTCTT
* * * *
2940433 TTTCGTGGCTCGACAACAAAAAGAAATATTCCTCA
126 TTT-GTGACTCGACAACAAAAACAAAAATGCCTCA
* * **
2940468 TTGGGATACAGGATATTGATGCTTT-AGTTTTGCAAGAAAAGCTTGATCATTTTGGCATTCTCCT
1 TTGGGATACACGATATTGATGCTTTGAGATTTGCAAGAAAAGCTTGATCATTTTACCATTCTCCT
* * * * *
2940532 TAGAATCAATGTTCATCTATCAAATAAAACTATATGGATACTCAGAATAATCTCCATTCTTTTTG
66 TAGAATCAAAGTTCATCCATCAAATAAAAC-ATATGAATACACAAAATAATCTCCATTCTTTTTG
* *
2940597 TGACTTGGCAACAAAAACAAAAATGCCTCA
130 TGACTCGACAACAAAAACAAAAATGCCTCA
*
2940627 TTGGGATACACGATATTGATGCTTTG-G-TTTCGTAAGAAAAGCTTGATCATTTT-CACATTCTC
1 TTGGGATACACGATATTGATGCTTTGAGATTT-GCAAGAAAAGCTTGATCATTTTAC-CATTCTC
*
2940689 TTTAGAATCA
64 CTTAGAATCA
2940699 TTGCTCATCC
Statistics
Matches: 194, Mismatches: 26, Indels: 21
0.80 0.11 0.09
Matches are distributed among these distances:
157 3 0.02
158 34 0.18
159 118 0.61
160 36 0.19
161 3 0.02
ACGTcount: A:0.33, C:0.17, G:0.15, T:0.35
Consensus pattern (159 bp):
TTGGGATACACGATATTGATGCTTTGAGATTTGCAAGAAAAGCTTGATCATTTTACCATTCTCCT
TAGAATCAAAGTTCATCCATCAAATAAAACATATGAATACACAAAATAATCTCCATTCTTTTTGT
GACTCGACAACAAAAACAAAAATGCCTCA
Found at i:2940607 original size:471 final size:468
Alignment explanation
Indices: 2939472--2940607 Score: 1060
Period size: 471 Copynumber: 2.4 Consensus size: 468
2939462 GGATTCTTAG
* *
2939472 AATAATCTCCATTCTTTTCGTTACTC-AGCAACAAAAAAAA-ATGCCTCATTGGGATACATGATA
1 AATAATCTCCATTCTTTTCGTGACTCGA-CAACAAAAAAAATATTCCTCATTGGGATACATGATA
* *
2939535 TTGATGCTTTGGTTTCGCAAGAAAAGCTTGATTATTTTCGCATTCTCCTTAGAATCAATGTTCAT
65 TTGATGCTTT-GTTTTGCAAGAAAAGCTTGATCATTTTCGCATTCTCCTTAGAATCAATGTTCAT
* * * **
2939600 CCATCAAATAAAACTATATTGATTCTCACAATGATCTCC-TAACTTTTCATGATTGGGCACACCA
129 CCATCAAATAAAACTATATGGATTCTCACAATAATCTCCAT-TCTTTTTGTGATT-GG-----CA
* * *
2939664 TAATCCCATTCTCCTTATTAGGAAACCCGATCTCATGCTTTGGTTTCATAGGAAAAGCTTTTCTT
187 -AATCCCATTCTCCTTATTAGGAAACACGATCTCATACTTTGGTTTCATAGGAAAAGCTTTTCCT
* *** ***
2939729 TCCACTGTTTTCCTTAGAATCAAAGTTAATTTGTCAATCAAGACAAACATGGATCCTCATGGTAA
251 TCCACTATTTTCCTTAGAATCAAAGTTAATCCATCAATCAAGACAAACATGGATCCTCATAAAAA
** * *** * *
2939794 TCACCACTCTAATCTTGATTGGGCACCATAAACACGTTTTCCTTGTTGGGATGCACGATGTTGAT
316 TCACCACTCTAATCTAAATTAGGCACCATAAACACGTTTTCCACCTTGGGATACACAATGTTGAT
** * * *
2939859 GCTTTGGTTTTGTAAGAAAGCTTTTCTTTCCAACATCGTCCTTAAAATAAAAGTTCATCTCTCAA
381 GCTTTGAATTTGCAAGAAAGCTTTTCTTTCCAACATAGTCCTTAAAATAAAAGTTCATCCCTCAA
*
2939924 ATGAGATAAACAGGAATTGACAT
446 ATGAGATAAACAGGAATTGACAA
* * * *** * * * ** *
2939947 AATAAACTCTATTCTTTTCATGACTCGGTGATAGAAACACATGCTCCTCATTGGGATCCATGATA
1 AATAATCTCCATTCTTTTCGTGACTCGACAACA-AAAAAAATATTCCTCATTGGGATACATGATA
** * * * * * * *
2940012 TTGATGCTTTGTAAATGGATGAAAAGCATT--TC-TTTCCCCTATTTTCCTTAAAAAAT-ATTGT
65 TTGATGCTTTGT-TTTGCAAGAAAAGC-TTGATCATTTTCGC-ATTCTCCTT--AGAATCAATGT
* * * * *
2940073 TCATCCATCAAATGAGAGAA--AAATGGATTCTCATAA-AATTATCCATTCATTTTGTAATTGGC
125 TCATCCATCAAAT-A-A-AACTATATGGATTCTCACAATAA-TCTCCATTCTTTTTGTGATTGGC
* * * * * * *
2940135 AAA-CCCATT-TTCTTCATTAGGTAACATGATATTGATATTTTGGTTTCGTAGGAAAAGCTTTTC
186 AAATCCCATTCTCCTT-ATTAGGAAACACGAT-CTCATACTTTGGTTTCATAGGAAAAGCTTTTC
* * ** * * *
2940198 CTTCCATTATTTTCCTTAGAGTTGAAGTTCATCCATTAATCAAGACAAATA-GTGATTCCT-ATA
249 CTTCCACTATTTTCCTTAGAATCAAAGTTAATCCATCAATCAAGACAAACATG-GA-TCCTCATA
*** * * * *
2940261 AAAATCTGTA-TTTTATCTAAAATTAGGCACCATAAATACGTTTTCCACCTTGGGATACACAATT
312 AAAATCACCACTCTAATCT-AAATTAGGCACCATAAACACGTTTTCCACCTTGGGATACACAATG
* * * * * *
2940325 TTGATGCTTTGAATTTGCAAGAAAGCTTTTCTTTCTACCATATTCCTTAGAATCAAAGTTCGTCC
376 TTGATGCTTTGAATTTGCAAGAAAGCTTTTCTTTCCAACATAGTCCTTAAAATAAAAGTTCATCC
* *
2940390 CTCAAATGAGATAAATATGAATTGACAA
441 CTCAAATGAGATAAACAGGAATTGACAA
* * *
2940418 AATAATCTCCATTTTTTTCGTGGCTCGACAACAAAAAGAAATATTCCTCATTGGGATACAGGATA
1 AATAATCTCCATTCTTTTCGTGACTCGACAACAAAAA-AAATATTCCTCATTGGGATACATGATA
*
2940483 TTGATGCTTTAGTTTTGCAAGAAAAGCTTGATCATTTTGGCATTCTCCTTAGAATCAATGTTCAT
65 TTGATGCTTT-GTTTTGCAAGAAAAGCTTGATCATTTTCGCATTCTCCTTAGAATCAATGTTCAT
* * *
2940548 CTATCAAATAAAACTATATGGATACTCAGAATAATCTCCATTCTTTTTGTGACTTGGCAA
129 CCATCAAATAAAACTATATGGATTCTCACAATAATCTCCATTCTTTTTGTGA-TTGGCAA
2940608 CAAAAACAAA
Statistics
Matches: 513, Mismatches: 120, Indels: 60
0.74 0.17 0.09
Matches are distributed among these distances:
468 2 0.00
469 5 0.01
470 63 0.12
471 282 0.55
472 18 0.04
473 4 0.01
475 29 0.06
476 16 0.03
477 58 0.11
478 32 0.06
479 2 0.00
480 2 0.00
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.36
Consensus pattern (468 bp):
AATAATCTCCATTCTTTTCGTGACTCGACAACAAAAAAAATATTCCTCATTGGGATACATGATAT
TGATGCTTTGTTTTGCAAGAAAAGCTTGATCATTTTCGCATTCTCCTTAGAATCAATGTTCATCC
ATCAAATAAAACTATATGGATTCTCACAATAATCTCCATTCTTTTTGTGATTGGCAAATCCCATT
CTCCTTATTAGGAAACACGATCTCATACTTTGGTTTCATAGGAAAAGCTTTTCCTTCCACTATTT
TCCTTAGAATCAAAGTTAATCCATCAATCAAGACAAACATGGATCCTCATAAAAATCACCACTCT
AATCTAAATTAGGCACCATAAACACGTTTTCCACCTTGGGATACACAATGTTGATGCTTTGAATT
TGCAAGAAAGCTTTTCTTTCCAACATAGTCCTTAAAATAAAAGTTCATCCCTCAAATGAGATAAA
CAGGAATTGACAA
Found at i:2940610 original size:159 final size:159
Alignment explanation
Indices: 2940418--2940762 Score: 469
Period size: 159 Copynumber: 2.2 Consensus size: 159
2940408 GAATTGACAA
* * * * * * *
2940418 AATAATCTCCATTTTTTTCGTGGCTCGACAACAAAAAGAAATATTCCTCATTGGGATACAGGATA
1 AATAATCTCCATTTTTTTCGTGACTTGGCAACAAAAACAAAAATGCCTCATTGGGATACACGATA
* ** *
2940483 TTGATGCTTTAGTTTTGCAAGAAAAGCTTGATCATTTTGGCATTCTCCTTAGAATCAATGTTCAT
66 TTGATGCTTTAGTTTCGCAAGAAAAGCTTGATCATTTTCACATTCTCCTTAGAATCAATGCTCAT
* * * *
2940548 CTATCAAATAAAACTATATGGATACTCAG
131 CCATAAAAAAAAACTATACGGATACTCAG
2940577 AATAATCTCCATTCTTTTT-GTGACTTGGCAACAAAAACAAAAATGCCTCATTGGGATACACGAT
1 AATAATCTCCATT-TTTTTCGTGACTTGGCAACAAAAACAAAAATGCCTCATTGGGATACACGAT
* * * *
2940641 ATTGATGCTTTGGTTTCGTAAGAAAAGCTTGATCATTTTCACATTCTCTTTAGAATCATTGCTCA
65 ATTGATGCTTTAGTTTCGCAAGAAAAGCTTGATCATTTTCACATTCTCCTTAGAATCAATGCTCA
* *
2940706 TCCATAAAAAAAAACTATACGGATTCTCAT
130 TCCATAAAAAAAAACTATACGGATACTCAG
*
2940736 AATAATCTCCTTTTTTTTCGTGA-TTGG
1 AATAATCTCCATTTTTTTCGTGACTTGG
2940763 GCACCATAAT
Statistics
Matches: 162, Mismatches: 22, Indels: 5
0.86 0.12 0.03
Matches are distributed among these distances:
158 9 0.06
159 148 0.91
160 5 0.03
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (159 bp):
AATAATCTCCATTTTTTTCGTGACTTGGCAACAAAAACAAAAATGCCTCATTGGGATACACGATA
TTGATGCTTTAGTTTCGCAAGAAAAGCTTGATCATTTTCACATTCTCCTTAGAATCAATGCTCAT
CCATAAAAAAAAACTATACGGATACTCAG
Found at i:2944545 original size:21 final size:20
Alignment explanation
Indices: 2944521--2944570 Score: 73
Period size: 21 Copynumber: 2.4 Consensus size: 20
2944511 GAAACTCAAT
*
2944521 GAAAAAAGAGAGAAAAAGAAA
1 GAAAAAAAAGAG-AAAAGAAA
2944542 GAAAAAAAAGAGAAAAGAAA
1 GAAAAAAAAGAGAAAAGAAA
2944562 GAAAGAAAA
1 GAAA-AAAA
2944571 TAAGGAAAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
20 12 0.44
21 15 0.56
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (20 bp):
GAAAAAAAAGAGAAAAGAAA
Found at i:2944557 original size:20 final size:21
Alignment explanation
Indices: 2944521--2944570 Score: 75
Period size: 20 Copynumber: 2.4 Consensus size: 21
2944511 GAAACTCAAT
*
2944521 GAAAAAAGAGAGAAAAAGAAA
1 GAAAAAAAAGAGAAAAAGAAA
2944542 GAAAAAAAAGAG-AAAAGAAA
1 GAAAAAAAAGAGAAAAAGAAA
*
2944562 GAAAGAAAA
1 GAAAAAAAA
2944571 TAAGGAAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
20 16 0.59
21 11 0.41
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (21 bp):
GAAAAAAAAGAGAAAAAGAAA
Found at i:2944562 original size:11 final size:10
Alignment explanation
Indices: 2944523--2944565 Score: 61
Period size: 10 Copynumber: 4.3 Consensus size: 10
2944513 AACTCAATGA
*
2944523 AAAAAGAGAG
1 AAAAAGAAAG
2944533 AAAAAGAAAG
1 AAAAAGAAAG
2944543 AAAAA-AAAG
1 AAAAAGAAAG
2944552 AGAAAAGAAAG
1 A-AAAAGAAAG
2944563 AAA
1 AAA
2944566 GAAAATAAGG
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
9 5 0.17
10 20 0.67
11 5 0.17
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (10 bp):
AAAAAGAAAG
Found at i:2944562 original size:24 final size:23
Alignment explanation
Indices: 2944522--2944591 Score: 81
Period size: 23 Copynumber: 3.1 Consensus size: 23
2944512 AAACTCAATG
*
2944522 AAAAAAGAGAGAAAAAGAAAGAA
1 AAAAAAGAGAAAAAAAGAAAGAA
2944545 AAAAAAGAGAAAAGAAAGAAAG-A
1 AAAAAAGAGAAAA-AAAGAAAGAA
* * *
2944568 AAATAAG-GAAAAATAGAAACAA
1 AAAAAAGAGAAAAAAAGAAAGAA
2944590 AA
1 AA
2944592 TGCTTGAGTT
Statistics
Matches: 41, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
21 6 0.15
22 8 0.20
23 19 0.46
24 8 0.20
ACGTcount: A:0.77, C:0.01, G:0.19, T:0.03
Consensus pattern (23 bp):
AAAAAAGAGAAAAAAAGAAAGAA
Found at i:2944585 original size:21 final size:21
Alignment explanation
Indices: 2944521--2944592 Score: 67
Period size: 21 Copynumber: 3.3 Consensus size: 21
2944511 GAAACTCAAT
2944521 GAAAA-AAGAGAGAAAAAGAAA
1 GAAAATAAGAGA-AAAAAGAAA
*
2944542 GAAAAAAAAGAGAAAAGAAAGAAA
1 G-AAAATAAGAG-AAA-AAAGAAA
2944566 GAAAATAAG-GAAAAATAGAAA
1 GAAAATAAGAGAAAAA-AGAAA
*
2944587 CAAAAT
1 GAAAAT
2944593 GCTTGAGTTC
Statistics
Matches: 44, Mismatches: 2, Indels: 10
0.79 0.04 0.18
Matches are distributed among these distances:
20 2 0.05
21 14 0.32
22 5 0.11
23 14 0.32
24 9 0.20
ACGTcount: A:0.75, C:0.01, G:0.19, T:0.04
Consensus pattern (21 bp):
GAAAATAAGAGAAAAAAGAAA
Found at i:2948819 original size:97 final size:98
Alignment explanation
Indices: 2948622--2948867 Score: 343
Period size: 97 Copynumber: 2.5 Consensus size: 98
2948612 TTTTTGATTG
* * *
2948622 AAAAACAAGGTTGGAGTATCCCCTT-GGAAGAATGGGGTTGGAGTGTCCCCGATGATGACAATTT
1 AAAAACGAGGTTGGAGTAT-CCCTTCGGAAGAATGGGGTTGGAGTATCCCCAATGATGACAATTT
*
2948686 TAAGCAAAAATAAGATTTAAATCGTGACAAGTTT
65 TAAGCAAAAACAAGATTTAAATCGTGACAAGTTT
* * * * **
2948720 AAAAATGGGGTTGGAGTGTCCCTTCAGAAGAATTAGGTTGGAGTATCCCCAATGATGACAA-TTT
1 AAAAACGAGGTTGGAGTATCCCTTCGGAAGAATGGGGTTGGAGTATCCCCAATGATGACAATTTT
* *
2948784 AGGCAAAAACAAGATTTAAATCTTGACAAGTTT
66 AAGCAAAAACAAGATTTAAATCGTGACAAGTTT
* *
2948817 AAAAACGAGGTTGGAATATCCCCTCGGAAGAATGGGGTTGGAGTATCCCCA
1 AAAAACGAGGTTGGAGTATCCCTTCGGAAGAATGGGGTTGGAGTATCCCCA
2948868 CGAATAAAAA
Statistics
Matches: 127, Mismatches: 20, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
97 81 0.64
98 46 0.36
ACGTcount: A:0.35, C:0.15, G:0.25, T:0.26
Consensus pattern (98 bp):
AAAAACGAGGTTGGAGTATCCCTTCGGAAGAATGGGGTTGGAGTATCCCCAATGATGACAATTTT
AAGCAAAAACAAGATTTAAATCGTGACAAGTTT
Found at i:2950488 original size:13 final size:13
Alignment explanation
Indices: 2950470--2950495 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
2950460 TACACAAAAT
2950470 ATGTATCGATACA
1 ATGTATCGATACA
2950483 ATGTATCGATACA
1 ATGTATCGATACA
2950496 CAAAAAAATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:2950493 original size:32 final size:34
Alignment explanation
Indices: 2950452--2950515 Score: 105
Period size: 32 Copynumber: 1.9 Consensus size: 34
2950442 TAGCCAAACT
*
2950452 TGTATCGATACAC-AAAATA-TGTATCGATACAA
1 TGTATCGATACACAAAAAAATTGTATCGATACAA
2950484 TGTATCGATACACAAAAAAATTGTATCGATAC
1 TGTATCGATACACAAAAAAATTGTATCGATAC
2950516 TTTGGCTTGT
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
32 13 0.45
33 5 0.17
34 11 0.38
ACGTcount: A:0.44, C:0.16, G:0.12, T:0.28
Consensus pattern (34 bp):
TGTATCGATACACAAAAAAATTGTATCGATACAA
Found at i:2956706 original size:13 final size:13
Alignment explanation
Indices: 2956684--2956721 Score: 58
Period size: 13 Copynumber: 2.9 Consensus size: 13
2956674 CATTTTTCTT
2956684 TGTATCGATACAA
1 TGTATCGATACAA
* *
2956697 TGTATTGATACAC
1 TGTATCGATACAA
2956710 TGTATCGATACA
1 TGTATCGATACA
2956722 GGGGGATTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:2959194 original size:20 final size:19
Alignment explanation
Indices: 2959140--2959195 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 19
2959130 AAAACCCTTA
*
2959140 AAAGTATCGATACACAGTTC
1 AAAGTATCGATACA-TGTTC
2959160 AAAGTATCGATACATGTTGC
1 AAAGTATCGATACATGTT-C
*
2959180 AATGTATCGATACATG
1 AAAGTATCGATACATG
2959196 AAAAAGATGT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
19 3 0.09
20 30 0.91
ACGTcount: A:0.38, C:0.16, G:0.18, T:0.29
Consensus pattern (19 bp):
AAAGTATCGATACATGTTC
Found at i:2959257 original size:65 final size:65
Alignment explanation
Indices: 2959182--2959342 Score: 290
Period size: 65 Copynumber: 2.5 Consensus size: 65
2959172 CATGTTGCAA
2959182 TGTATCGATACATGAAAAAGATGTATCGATACATGTCATTGGAATTTCTTGGCAGTAGCCAAACT
1 TGTATCGATACATGAAAAAGATGTATCGATACATGTCATTGGAATTTCTTGGCAGTAGCCAAACT
2959247 TGTATCGATACATGAAAAAGATGTATCGATACATGTCATTGGAATTTCTTGGCAGTAGCCAAACT
1 TGTATCGATACATGAAAAAGATGTATCGATACATGTCATTGGAATTTCTTGGCAGTAGCCAAACT
* *
2959312 TGTATCGATACA--CAAAATATGTATCGATACA
1 TGTATCGATACATGAAAAAGATGTATCGATACA
2959343 ATGTATCGAT
Statistics
Matches: 94, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
63 17 0.18
65 77 0.82
ACGTcount: A:0.35, C:0.16, G:0.19, T:0.30
Consensus pattern (65 bp):
TGTATCGATACATGAAAAAGATGTATCGATACATGTCATTGGAATTTCTTGGCAGTAGCCAAACT
Found at i:2959348 original size:13 final size:13
Alignment explanation
Indices: 2959330--2959355 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
2959320 TACACAAAAT
2959330 ATGTATCGATACA
1 ATGTATCGATACA
2959343 ATGTATCGATACA
1 ATGTATCGATACA
2959356 CAAAAAAATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:2959353 original size:32 final size:34
Alignment explanation
Indices: 2959312--2959376 Score: 107
Period size: 32 Copynumber: 2.0 Consensus size: 34
2959302 TAGCCAAACT
*
2959312 TGTATCGATACAC-AAAATA-TGTATCGATACAA
1 TGTATCGATACACAAAAAAATTGTATCGATACAA
2959344 TGTATCGATACACAAAAAAATTGTATCGATACA
1 TGTATCGATACACAAAAAAATTGTATCGATACA
2959377 TTGGCTTGTA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
32 13 0.43
33 5 0.17
34 12 0.40
ACGTcount: A:0.45, C:0.15, G:0.12, T:0.28
Consensus pattern (34 bp):
TGTATCGATACACAAAAAAATTGTATCGATACAA
Found at i:2961157 original size:18 final size:18
Alignment explanation
Indices: 2961130--2961199 Score: 59
Period size: 18 Copynumber: 3.6 Consensus size: 18
2961120 TGATAGGAGG
2961130 AGAGACAGGAGAGATAGT
1 AGAGACAGGAGAGATAGT
* *
2961148 AGAGATAGGAGGGATGATGGAGG
1 AGAGACAGGA--GA-GAT--AGT
*
2961171 AGAGACAGGAGAGATAAT
1 AGAGACAGGAGAGATAGT
*
2961189 AGAGAGAGGAG
1 AGAGACAGGAG
2961200 GGATGACAGG
Statistics
Matches: 41, Mismatches: 6, Indels: 10
0.72 0.11 0.18
Matches are distributed among these distances:
18 20 0.49
20 5 0.12
21 5 0.12
23 11 0.27
ACGTcount: A:0.43, C:0.03, G:0.44, T:0.10
Consensus pattern (18 bp):
AGAGACAGGAGAGATAGT
Found at i:2961182 original size:41 final size:41
Alignment explanation
Indices: 2961097--2961214 Score: 173
Period size: 41 Copynumber: 2.8 Consensus size: 41
2961087 TAGCCCTCAA
* *
2961097 AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGAT-GGAGGAGAGACAGG
*
2961139 AGAGATAGTAGAGATAGGAGGGATGATGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATGGAGGAGAGACAGG
* *
2961180 AGAGATAATAGAGAGAGGAGGGATGACAGGAGGAG
1 AGAGATAGTAGAGAGAGGAGGGATGA-TGGAGGAG
2961215 GAGAGAAGAA
Statistics
Matches: 69, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
41 38 0.55
42 31 0.45
ACGTcount: A:0.42, C:0.03, G:0.47, T:0.08
Consensus pattern (41 bp):
AGAGATAGTAGAGAGAGGAGGGATGATGGAGGAGAGACAGG
Found at i:2967945 original size:20 final size:21
Alignment explanation
Indices: 2967921--2967973 Score: 65
Period size: 20 Copynumber: 2.6 Consensus size: 21
2967911 ATTTCAAGCA
*
2967921 CGTATCGATACATT-CACTTAT
1 CGTATTGATACATTAC-CTTAT
*
2967942 -GTATTGACACATTACCTTAT
1 CGTATTGATACATTACCTTAT
2967962 CGTATTGATACA
1 CGTATTGATACA
2967974 AATTATTGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
20 16 0.59
21 11 0.41
ACGTcount: A:0.30, C:0.21, G:0.11, T:0.38
Consensus pattern (21 bp):
CGTATTGATACATTACCTTAT
Found at i:2969343 original size:157 final size:157
Alignment explanation
Indices: 2968951--2969349 Score: 357
Period size: 157 Copynumber: 2.5 Consensus size: 157
2968941 TATCTTTTCT
* * * * * *
2968951 TTTTC-TAATTTGGCACCATAAACTCATTCTCCTCATTAAGAAACATGATTTTGAAGCTTTGGTT
1 TTTTCATAATTCGGCACCATAAACACATTTTCCTCATTAAGATACATGATATTGATGCTTT-GTT
** * * * * ** *
2969015 TCACAAGATATGCTTTTCTTTTTACCATTTTTTCTTAGAATCAAAAGATCATCTATCGATCAAGG
65 TTGCAAGAAAAGC--TTCTTTTCACCATTTTTTCATAGAATCAAAAGATCATCTATAAATCAAGA
* * ** *
2969080 TAAACGTGGATTCTTGTAACAATCTCCATT
128 CAAACATGGATTCTCATAACAATCTCCATC
* * * * ** *
2969110 TTTTTATAATTCGGCAACAAAAACACATACTTT--TCATTGAGATACACAATATTGTTGCTTTGA
1 TTTTCATAATTCGGCACCATAAACACAT--TTTCCTCATTAAGATACATGATATTGATGCTTTG-
* * *
2969173 TTTTGCAAG-AAAGCTTCTTTTCCACCA-TTTTTCATAGAAT-AAAAGTTTATCTTTTAAAT-AA
63 TTTTGCAAGAAAAGCTTCTTTT-CACCATTTTTTCATAGAATCAAAAGATCATC-TATAAATCAA
*
2969234 GACAAACATGGATTCTCATAATAATCTCCACTC
126 GACAAACATGGATTCTCATAACAATCTCCA-TC
*
2969267 TTTTCATAATTGGGCACCATAAACACATTTTCCTCATTAAGATACATGA-ATTGATGCTTTAGTT
1 TTTTCATAATTCGGCACCATAAACACATTTTCCTCATTAAGATACATGATATTGATGCTTT-GTT
2969331 TTGCAAGAAAAGCTT-TTTT
65 TTGCAAGAAAAGCTTCTTTT
2969350 GTCCCTTATA
Statistics
Matches: 190, Mismatches: 39, Indels: 25
0.75 0.15 0.10
Matches are distributed among these distances:
155 3 0.02
156 58 0.31
157 69 0.36
158 4 0.02
159 8 0.04
160 46 0.24
162 2 0.01
ACGTcount: A:0.32, C:0.18, G:0.11, T:0.39
Consensus pattern (157 bp):
TTTTCATAATTCGGCACCATAAACACATTTTCCTCATTAAGATACATGATATTGATGCTTTGTTT
TGCAAGAAAAGCTTCTTTTCACCATTTTTTCATAGAATCAAAAGATCATCTATAAATCAAGACAA
ACATGGATTCTCATAACAATCTCCATC
Found at i:3040215 original size:13 final size:13
Alignment explanation
Indices: 3040197--3040222 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
3040187 TACAGCAAGT
3040197 ATGTATCGATACA
1 ATGTATCGATACA
3040210 ATGTATCGATACA
1 ATGTATCGATACA
3040223 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:3040299 original size:19 final size:20
Alignment explanation
Indices: 3040275--3040314 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
3040265 GGCTATATTT
3040275 TCAAATA-TGTATCGATACA
1 TCAAATATTGTATCGATACA
3040294 TCAAATATTGTATCGATACA
1 TCAAATATTGTATCGATACA
3040314 T
1 T
3040315 TTACACGGGA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 7 0.35
20 13 0.65
ACGTcount: A:0.40, C:0.15, G:0.10, T:0.35
Consensus pattern (20 bp):
TCAAATATTGTATCGATACA
Found at i:3043522 original size:38 final size:40
Alignment explanation
Indices: 3043474--3043562 Score: 119
Period size: 42 Copynumber: 2.2 Consensus size: 40
3043464 GGAAGATAAA
* *
3043474 GGGGAGAATGCGTAAA-TTGCTA-CAATTACTTTATTAAG
1 GGGGAGAATGCGTAAATTTGATATCAATTACTTGATTAAG
*
3043512 GGGGAGAATGCGTAAATTTTTGATATGAATTACTTGATTAAG
1 GGGGAGAATGCGTAAA--TTTGATATCAATTACTTGATTAAG
3043554 GGGGAGAAT
1 GGGGAGAAT
3043563 TATTAATAAA
Statistics
Matches: 44, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
38 16 0.36
41 5 0.11
42 23 0.52
ACGTcount: A:0.34, C:0.07, G:0.28, T:0.31
Consensus pattern (40 bp):
GGGGAGAATGCGTAAATTTGATATCAATTACTTGATTAAG
Found at i:3043609 original size:112 final size:112
Alignment explanation
Indices: 3043412--3043633 Score: 444
Period size: 112 Copynumber: 2.0 Consensus size: 112
3043402 TGTGTGCAAA
3043412 TAAATTTTTGATATGAATTACTTGATTAAGGGGGAGAATTATTAATAAACGGGGAAGATAAAGGG
1 TAAATTTTTGATATGAATTACTTGATTAAGGGGGAGAATTATTAATAAACGGGGAAGATAAAGGG
3043477 GAGAATGCGTAAATTGCTACAATTACTTTATTAAGGGGGAGAATGCG
66 GAGAATGCGTAAATTGCTACAATTACTTTATTAAGGGGGAGAATGCG
3043524 TAAATTTTTGATATGAATTACTTGATTAAGGGGGAGAATTATTAATAAACGGGGAAGATAAAGGG
1 TAAATTTTTGATATGAATTACTTGATTAAGGGGGAGAATTATTAATAAACGGGGAAGATAAAGGG
3043589 GAGAATGCGTAAATTGCTACAATTACTTTATTAAGGGGGAGAATG
66 GAGAATGCGTAAATTGCTACAATTACTTTATTAAGGGGGAGAATG
3043634 TACGAACTTG
Statistics
Matches: 110, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
112 110 1.00
ACGTcount: A:0.38, C:0.06, G:0.27, T:0.30
Consensus pattern (112 bp):
TAAATTTTTGATATGAATTACTTGATTAAGGGGGAGAATTATTAATAAACGGGGAAGATAAAGGG
GAGAATGCGTAAATTGCTACAATTACTTTATTAAGGGGGAGAATGCG
Found at i:3044305 original size:13 final size:13
Alignment explanation
Indices: 3044287--3044312 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
3044277 TACAGCAAGT
3044287 ATGTATCGATACA
1 ATGTATCGATACA
3044300 ATGTATCGATACA
1 ATGTATCGATACA
3044313 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:3044389 original size:19 final size:20
Alignment explanation
Indices: 3044365--3044404 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
3044355 GGCTATATTT
3044365 TCAAATA-TGTATCGATACA
1 TCAAATATTGTATCGATACA
3044384 TCAAATATTGTATCGATACA
1 TCAAATATTGTATCGATACA
3044404 T
1 T
3044405 TTACACGGGA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 7 0.35
20 13 0.65
ACGTcount: A:0.40, C:0.15, G:0.10, T:0.35
Consensus pattern (20 bp):
TCAAATATTGTATCGATACA
Found at i:3047641 original size:1 final size:1
Alignment explanation
Indices: 3047635--3047725 Score: 92
Period size: 1 Copynumber: 91.0 Consensus size: 1
3047625 CGTCCTCCAC
* * * * * * *
3047635 AAAAAAAAAAAAACAAAACAAAAAAAAACAAAACAAAAAAAAACAAAAACAAAAAAAACAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * *
3047700 AAACAAACAAAAAAAACAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAA
3047726 GGGTTCGGAT
Statistics
Matches: 70, Mismatches: 20, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
1 70 1.00
ACGTcount: A:0.89, C:0.11, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:3047657 original size:10 final size:10
Alignment explanation
Indices: 3047633--3047724 Score: 104
Period size: 9 Copynumber: 9.6 Consensus size: 10
3047623 GGCGTCCTCC
3047633 ACAAAA-AAA
1 ACAAAACAAA
*
3047642 AAAAAACAAA
1 ACAAAACAAA
*
3047652 ACAAAAAAAA
1 ACAAAACAAA
3047662 ACAAAACAAA
1 ACAAAACAAA
*
3047672 AAAAAACAAAA
1 ACAAAAC-AAA
3047683 ACAAAA-AAA
1 ACAAAACAAA
*
3047692 ACAAAAAAAA
1 ACAAAACAAA
3047702 AC-AAACAAA
1 ACAAAACAAA
3047711 A-AAAACAAA
1 ACAAAACAAA
3047720 A-AAAA
1 ACAAAA
3047725 AGGGTTCGGA
Statistics
Matches: 72, Mismatches: 7, Indels: 8
0.83 0.08 0.09
Matches are distributed among these distances:
9 33 0.46
10 31 0.43
11 8 0.11
ACGTcount: A:0.88, C:0.12, G:0.00, T:0.00
Consensus pattern (10 bp):
ACAAAACAAA
Found at i:3047659 original size:15 final size:14
Alignment explanation
Indices: 3047633--3047725 Score: 134
Period size: 15 Copynumber: 6.4 Consensus size: 14
3047623 GGCGTCCTCC
3047633 ACAAAAAAAAAAAA
1 ACAAAAAAAAAAAA
3047647 ACAAAACAAAAAAAA
1 ACAAAA-AAAAAAAA
3047662 ACAAAACAAAAAAAA
1 ACAAAA-AAAAAAAA
3047677 ACAAAAACAAAAAAA
1 ACAAAAA-AAAAAAA
*
3047692 ACAAAAAAAAACAA
1 ACAAAAAAAAAAAA
3047706 ACAAAAAAAACAAAA
1 ACAAAAAAAA-AAAA
3047721 A-AAAA
1 ACAAAA
3047726 GGGTTCGGAT
Statistics
Matches: 74, Mismatches: 2, Indels: 6
0.90 0.02 0.07
Matches are distributed among these distances:
14 27 0.36
15 47 0.64
ACGTcount: A:0.88, C:0.12, G:0.00, T:0.00
Consensus pattern (14 bp):
ACAAAAAAAAAAAA
Found at i:3047667 original size:25 final size:24
Alignment explanation
Indices: 3047636--3047725 Score: 130
Period size: 25 Copynumber: 3.8 Consensus size: 24
3047626 GTCCTCCACA
*
3047636 AAAAAAAA-AAAACAAAACAAAAA
1 AAAAAAAACAAAAAAAAACAAAAA
3047659 AAAACAAAACAAAAAAAAACAAAAA
1 AAAA-AAAACAAAAAAAAACAAAAA
*
3047684 CAAAAAAAACAAAAAAAAAC-AAAC
1 -AAAAAAAACAAAAAAAAACAAAAA
3047708 AAAAAAAACAAAAAAAAA
1 AAAAAAAACAAAAAAAAA
3047726 GGGTTCGGAT
Statistics
Matches: 62, Mismatches: 2, Indels: 6
0.89 0.03 0.09
Matches are distributed among these distances:
23 22 0.35
24 7 0.11
25 29 0.47
26 4 0.06
ACGTcount: A:0.89, C:0.11, G:0.00, T:0.00
Consensus pattern (24 bp):
AAAAAAAACAAAAAAAAACAAAAA
Found at i:3047725 original size:10 final size:10
Alignment explanation
Indices: 3047633--3047725 Score: 111
Period size: 10 Copynumber: 9.1 Consensus size: 10
3047623 GGCGTCCTCC
3047633 ACAAAAAAAA
1 ACAAAAAAAA
*
3047643 A-AAAACAAA
1 ACAAAAAAAA
3047652 ACAAAAAAAA
1 ACAAAAAAAA
3047662 ACAAAACAAAA
1 ACAAAA-AAAA
3047673 A-AAAACAAAA
1 ACAAAA-AAAA
3047683 AC-AAAAAAA
1 ACAAAAAAAA
3047692 ACAAAAAAAA
1 ACAAAAAAAA
3047702 ACAAACAAAAAAA
1 AC--A-AAAAAAA
3047715 ACAAAAAAAA
1 ACAAAAAAAA
3047725 A
1 A
3047726 GGGTTCGGAT
Statistics
Matches: 74, Mismatches: 2, Indels: 14
0.82 0.02 0.16
Matches are distributed among these distances:
9 14 0.19
10 44 0.59
11 6 0.08
12 1 0.01
13 9 0.12
ACGTcount: A:0.88, C:0.12, G:0.00, T:0.00
Consensus pattern (10 bp):
ACAAAAAAAA
Found at i:3049251 original size:57 final size:57
Alignment explanation
Indices: 3049158--3049370 Score: 232
Period size: 57 Copynumber: 3.7 Consensus size: 57
3049148 CATTCCTCAC
* * *
3049158 CCTTCAAAAGTCCACAAGTCAGTGGCATATTTTTCAAAGCCCACAAGTCAGTGGCAA
1 CCTTTAAAAGCCCACAAGTCAGTGGCATCTTTTTCAAAGCCCACAAGTCAGTGGCAA
* *
3049215 CCTTTAAAAGCCCACAAGTCAGTGGCATCTTTTTCAAAGCCCACAAGTTAGTGGCATTT
1 CCTTTAAAAGCCCACAAGTCAGTGGCATCTTTTTCAAAGCCCACAAGTCAGTGGCA--A
** * * * *
3049274 TTTTTCAAAAGCCCACAAGTCAGTGGCAAC--CTTCAAAGCCCACAAATCAGTGGCAC
1 CCTTT-AAAAGCCCACAAGTCAGTGGCATCTTTTTCAAAGCCCACAAGTCAGTGGCAA
** * *
3049330 CCTTTTTCGAAGCCCACAAGTCGGTGGCATCTTTTCCAAAG
1 CC--TTTAAAAGCCCACAAGTCAGTGGCATCTTTTTCAAAG
3049371 TCGACAACTC
Statistics
Matches: 129, Mismatches: 20, Indels: 12
0.80 0.12 0.07
Matches are distributed among these distances:
57 72 0.56
58 25 0.19
59 9 0.07
60 23 0.18
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (57 bp):
CCTTTAAAAGCCCACAAGTCAGTGGCATCTTTTTCAAAGCCCACAAGTCAGTGGCAA
Found at i:3049343 original size:88 final size:87
Alignment explanation
Indices: 3049164--3049364 Score: 289
Period size: 88 Copynumber: 2.3 Consensus size: 87
3049154 TCACCCTTCA
* *
3049164 AAAGTCCACAAGTCAGTGGCA-TATTTTTCAAAGCCCACAAGTCAGTGGCAACCTTTAAAAGCCC
1 AAAGCCCACAAGTCAGTGGCATTTTTTTTCAAAGCCCACAAGTCAGTGGCAACCTTTAAAAGCCC
* *
3049228 ACAAGTCAGTGGCATCTTTTTC
66 ACAAATCAGTGGCACCTTTTTC
* *
3049250 AAAGCCCACAAGTTAGTGGCATTTTTTTTCAAAAGCCCACAAGTCAGTGGCAACC-TTCAAAGCC
1 AAAGCCCACAAGTCAGTGGCATTTTTTTTC-AAAGCCCACAAGTCAGTGGCAACCTTTAAAAGCC
3049314 CACAAATCAGTGGCACCCTTTTTC
65 CACAAATCAGTGGCA-CCTTTTTC
* * *
3049338 GAAGCCCACAAGTCGGTGGCATCTTTT
1 AAAGCCCACAAGTCAGTGGCATTTTTT
3049365 CCAAAGTCGA
Statistics
Matches: 102, Mismatches: 10, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
86 19 0.19
87 29 0.28
88 54 0.53
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (87 bp):
AAAGCCCACAAGTCAGTGGCATTTTTTTTCAAAGCCCACAAGTCAGTGGCAACCTTTAAAAGCCC
ACAAATCAGTGGCACCTTTTTC
Found at i:3049377 original size:29 final size:29
Alignment explanation
Indices: 3049164--3049396 Score: 247
Period size: 29 Copynumber: 8.0 Consensus size: 29
3049154 TCACCCTTCA
* *
3049164 AAAGTCCACAAGTCAGTGGCATATTTTTC
1 AAAGCCCACAAGTCAGTGGCATCTTTTTC
* * *
3049193 AAAGCCCACAAGTCAGTGGCAAC-CTTTA
1 AAAGCCCACAAGTCAGTGGCATCTTTTTC
3049221 AAAGCCCACAAGTCAGTGGCATCTTTTTC
1 AAAGCCCACAAGTCAGTGGCATCTTTTTC
* *
3049250 AAAGCCCACAAGTTAGTGGCATTTTTTTTC
1 AAAGCCCACAAGTCAGTGGCA-TCTTTTTC
* *
3049280 AAAAGCCCACAAGTCAGTGGCAAC--CTTC
1 -AAAGCCCACAAGTCAGTGGCATCTTTTTC
* *
3049308 AAAGCCCACAAATCAGTGGCACCCTTTTTC
1 AAAGCCCACAAGTCAGTGGCA-TCTTTTTC
* * *
3049338 GAAGCCCACAAGTCGGTGGCATCTTTTCC
1 AAAGCCCACAAGTCAGTGGCATCTTTTTC
* * * *
3049367 AAAGTCGACAACTCCGTGGCACTCTTTTTC
1 AAAGCCCACAAGTCAGTGGCA-TCTTTTTC
3049397 TTTTGTAAGC
Statistics
Matches: 169, Mismatches: 28, Indels: 13
0.80 0.13 0.06
Matches are distributed among these distances:
27 20 0.12
28 29 0.17
29 65 0.38
30 35 0.21
31 20 0.12
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.26
Consensus pattern (29 bp):
AAAGCCCACAAGTCAGTGGCATCTTTTTC
Found at i:3049386 original size:117 final size:117
Alignment explanation
Indices: 3049160--3049396 Score: 298
Period size: 117 Copynumber: 2.0 Consensus size: 117
3049150 TTCCTCACCC
* ** *
3049160 TTCAAAAGTCCACAAGTCAGTGGCATATTTTTCAAAGCCCACAAGTCAGTGGCAACCTTTAAAAG
1 TTCAAAAGCCCACAAGTCAGTGGCATATCCTTCAAAGCCCACAAATCAGTGGCAACCTTTAAAAG
* * * * *
3049225 CCCACAAGTCAGTGGCATCTTTTTCAAAGCCCACAAGTTAGTGGCATTTTTT
66 CCCACAAGTCAGTGGCATCTTTTCCAAAGCCCACAACTCAGTGGCACTCTTT
* **
3049277 TTCAAAAGCCCACAAGTCAGTGGCA-A-CCTTCAAAGCCCACAAATCAGTGGCACCCTTTTTCGA
1 TTCAAAAGCCCACAAGTCAGTGGCATATCCTTCAAAGCCCACAAATCAGTGGCAACC--TTTAAA
* * * *
3049340 AGCCCACAAGTCGGTGGCATCTTTTCCAAAGTCGACAACTCCGTGGCACTCTTT
64 AGCCCACAAGTCAGTGGCATCTTTTCCAAAGCCCACAACTCAGTGGCACTCTTT
3049394 TTC
1 TTC
3049397 TTTTGTAAGC
Statistics
Matches: 102, Mismatches: 16, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
115 25 0.25
116 1 0.01
117 76 0.75
ACGTcount: A:0.29, C:0.28, G:0.17, T:0.26
Consensus pattern (117 bp):
TTCAAAAGCCCACAAGTCAGTGGCATATCCTTCAAAGCCCACAAATCAGTGGCAACCTTTAAAAG
CCCACAAGTCAGTGGCATCTTTTCCAAAGCCCACAACTCAGTGGCACTCTTT
Found at i:3049474 original size:32 final size:31
Alignment explanation
Indices: 3049433--3049569 Score: 177
Period size: 32 Copynumber: 4.4 Consensus size: 31
3049423 CTCTTTTTCT
*
3049433 TCTAAAGCCCACACAAGTTGGTGGCAATCCCC
1 TCTAAAGCCCACACAAGTCGGTGGCAA-CCCC
* ** *
3049465 TCTAAAGCCCACACAAGGCGGTGGCAGGCCT
1 TCTAAAGCCCACACAAGTCGGTGGCAACCCC
3049496 TCTCAAAGCCCACACAAGTCGGTGGCAACCCTC
1 TCT-AAAGCCCACACAAGTCGGTGGCAACCC-C
* *
3049529 TCTAAAGCCCACACAAGTCAGTGGCAACCCT
1 TCTAAAGCCCACACAAGTCGGTGGCAACCCC
3049560 TCT-AAGCCCA
1 TCTAAAGCCCA
3049570 ATATCGCTGG
Statistics
Matches: 92, Mismatches: 11, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
30 7 0.08
31 8 0.09
32 74 0.80
33 3 0.03
ACGTcount: A:0.28, C:0.36, G:0.20, T:0.16
Consensus pattern (31 bp):
TCTAAAGCCCACACAAGTCGGTGGCAACCCC
Found at i:3049537 original size:64 final size:63
Alignment explanation
Indices: 3049431--3049569 Score: 201
Period size: 64 Copynumber: 2.2 Consensus size: 63
3049421 CACTCTTTTT
* *
3049431 CTTCTAAAGCCCACACAAGTTGGTGGCAATCCCCTCTAAAGCCCACACAAGGCGGTGGCAGGC
1 CTTCTAAAGCCCACACAAGTCGGTGGCAATCCCCTCTAAAGCCCACACAAGGCAGTGGCAGGC
* **
3049494 CTTCTCAAAGCCCACACAAGTCGGTGGCAA-CCCTCTCTAAAGCCCACACAAGTCAGTGGCAACC
1 CTTCT-AAAGCCCACACAAGTCGGTGGCAATCCC-CTCTAAAGCCCACACAAGGCAGTGGCAGGC
3049558 CTTCT-AAGCCCA
1 CTTCTAAAGCCCA
3049570 ATATCGCTGG
Statistics
Matches: 69, Mismatches: 5, Indels: 5
0.87 0.06 0.06
Matches are distributed among these distances:
62 7 0.10
63 8 0.12
64 54 0.78
ACGTcount: A:0.28, C:0.36, G:0.19, T:0.17
Consensus pattern (63 bp):
CTTCTAAAGCCCACACAAGTCGGTGGCAATCCCCTCTAAAGCCCACACAAGGCAGTGGCAGGC
Found at i:3049671 original size:43 final size:43
Alignment explanation
Indices: 3049608--3049973 Score: 444
Period size: 43 Copynumber: 8.1 Consensus size: 43
3049598 GCACCTTCAT
*
3049608 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAC
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCAC
* * *
3049651 CTTTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTC
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCA----C
*
3049698 ATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAC
1 --CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCAC
*
3049743 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTC
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCA----C
* *
3049790 ATCTTTAAGTCCAATGTAGCTGGCTTTGAATCAGCACATTGGCAC
1 --CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCAC
* * * *
3049835 GTTCAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCAACTTC
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGC-A---C
*
3049882 TTCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAC
1 --CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCAC
*
3049927 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCAC
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCAC
3049970 CTTT
1 CTTT
3049974 TCCATCTTTA
Statistics
Matches: 279, Mismatches: 26, Indels: 36
0.82 0.08 0.11
Matches are distributed among these distances:
43 158 0.57
44 1 0.00
45 3 0.01
47 3 0.01
48 1 0.00
49 113 0.41
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.31
Consensus pattern (43 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCAC
Found at i:3049719 original size:92 final size:92
Alignment explanation
Indices: 3049557--3050026 Score: 796
Period size: 92 Copynumber: 5.1 Consensus size: 92
3049547 CAGTGGCAAC
*
3049557 CCTTCTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATG
1 CCTT-TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATG
3049622 TAGCTGGCCTTGAATCAGCACATTGGCA
65 TAGCTGGCCTTGAATCAGCACATTGGCA
*
3049650 CCTTTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGT
1 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGT
3049715 AGCTGGCCTTGAATCAGCACATTGGCA
66 AGCTGGCCTTGAATCAGCACATTGGCA
*
3049742 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGT
1 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGT
*
3049807 AGCTGGCTTTGAATCAGCACATTGGCA
66 AGCTGGCCTTGAATCAGCACATTGGCA
* * * *
3049834 CGTTCAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCAACTTCTTCTTTAAGTCCAATGT
1 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGT
3049899 AGCTGGCCTTGAATCAGCACATTGGCA
66 AGCTGGCCTTGAATCAGCACATTGGCA
* *
3049926 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTTCAA
1 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACC--TT-CATCTTTAAGTCCAA
*
3049991 TGTAGCTGGCCTTGAATCAGCACATTGACA
63 TGTAGCTGGCCTTGAATCAGCACATTGGCA
3050021 TCCTTT
1 -CCTTT
3050027 TTCTCATCTT
Statistics
Matches: 357, Mismatches: 16, Indels: 5
0.94 0.04 0.01
Matches are distributed among these distances:
92 304 0.85
93 4 0.01
94 2 0.01
95 42 0.12
96 5 0.01
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.31
Consensus pattern (92 bp):
CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGT
AGCTGGCCTTGAATCAGCACATTGGCA
Found at i:3050062 original size:55 final size:52
Alignment explanation
Indices: 3049927--3050373 Score: 230
Period size: 52 Copynumber: 8.6 Consensus size: 52
3049917 ACATTGGCAC
* *
3049927 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACACCTTTTCCAT
* *
3049979 CTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCTCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACA-CC-TTTTC-CAT
* * * * * * * *
3050034 CTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTGGCATCTTTAT-CACT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACACCTTT-TCCA-T
* * * * * * * * * ** *
3050087 TTTCTCA-TCTTCATCTTTAAG-T--CCAATGTAGCTGGC-C-TTGAATCAGCACATTGGCAC
1 CTT-TAAGTC--CA-ATAT-AGCTGGCC-TTGAATC-AGCACATTG-A-CA-C-CTTTTCCAT
* * * * * *
3050144 CTTTAAGCCCGATATTGCTGGCCTTGAATCAGCATATTGGCA--TCTT-CAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACACCTTTTCCAT
* *
3050193 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA-------C--
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACACCTTTTCCAT
* *
3050236 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACACCTTTTCCAT
* *
3050288 CTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCTCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACA-CC-TTTTC-CAT
* * * *
3050343 CTTTAAGCCCAATATCGTTGGCCGTGAATCA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCA
3050374 ACATATTGGC
Statistics
Matches: 295, Mismatches: 65, Indels: 67
0.69 0.15 0.16
Matches are distributed among these distances:
43 40 0.14
45 1 0.00
49 39 0.13
50 2 0.01
52 78 0.26
53 12 0.04
54 26 0.09
55 75 0.25
56 13 0.04
57 4 0.01
58 5 0.02
ACGTcount: A:0.24, C:0.25, G:0.16, T:0.34
Consensus pattern (52 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACACCTTTTCCAT
Found at i:3050164 original size:43 final size:43
Alignment explanation
Indices: 3050101--3050282 Score: 247
Period size: 43 Copynumber: 4.1 Consensus size: 43
3050091 TCATCTTCAT
*
3050101 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAC
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCAC
* * * *
3050144 CTTTAAGCCCGATATTGCTGGCCTTGAATCAGCATATTGGCATCTTC
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCA----C
*
3050191 ATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAC
1 --CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCAC
*
3050236 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCAC
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCAC
3050279 CTTT
1 CTTT
3050283 TCCATCTTTA
Statistics
Matches: 121, Mismatches: 12, Indels: 12
0.83 0.08 0.08
Matches are distributed among these distances:
43 82 0.68
45 1 0.01
47 1 0.01
49 37 0.31
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.31
Consensus pattern (43 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCAC
Found at i:3050177 original size:309 final size:309
Alignment explanation
Indices: 3049786--3050457 Score: 1263
Period size: 309 Copynumber: 2.2 Consensus size: 309
3049776 ATATTGGCAC
* * * *
3049786 CTTCATCTTTAAGTCCAATGTAGCTGGCTTTGAATCAGCACATTGGCACGTTCAAGTCCAATATC
1 CTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGCCCAATATC
*
3049851 GCTGGCCTTGAATCAGCATATTGGCAACTTCTTCTTTAAGTCCAATGTAGCTGGCCTTGAATCAG
66 GCTGGCCTTGAATCAGCATATTGGCAACTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAG
3049916 CACATTGGCACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCT
131 CACATTGGCACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCT
3049981 TTAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCTCATCTTTAAGCCCAA
196 TTAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCTCATCTTTAAGCCCAA
3050046 TATCGTTGGCCGTGAATCAACATATTGGCATCTTTATCACTTTTCTCAT
261 TATCGTTGGCCGTGAATCAACATATTGGCATCTTTATCACTTTTCTCAT
* *
3050095 CTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGCCCGATATT
1 CTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGCCCAATATC
*
3050160 GCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAG
66 GCTGGCCTTGAATCAGCATATTGGCAACTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAG
3050225 CACATTGGCACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCT
131 CACATTGGCACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCT
3050290 TTAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCTCATCTTTAAGCCCAA
196 TTAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCTCATCTTTAAGCCCAA
3050355 TATCGTTGGCCGTGAATCAACATATTGGCATCTTTATCACTTTTCTCAT
261 TATCGTTGGCCGTGAATCAACATATTGGCATCTTTATCACTTTTCTCAT
*
3050404 CTTCATCTTTAAGTCCAATGTTGCTGGCCTTGAATCAGCACATTGGCACCTTTA
1 CTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTA
3050458 TCTTTAAGTC
Statistics
Matches: 354, Mismatches: 9, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
309 354 1.00
ACGTcount: A:0.24, C:0.25, G:0.17, T:0.34
Consensus pattern (309 bp):
CTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGCCCAATATC
GCTGGCCTTGAATCAGCATATTGGCAACTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAG
CACATTGGCACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCT
TTAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCTCATCTTTAAGCCCAA
TATCGTTGGCCGTGAATCAACATATTGGCATCTTTATCACTTTTCTCAT
Done.