Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold32
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 5587194
ACGTcount: A:0.26, C:0.15, G:0.16, T:0.26
Warning! 895791 characters in sequence are not A, C, G, or T
File 22 of 33
Found at i:3156370 original size:31 final size:31
Alignment explanation
Indices: 3156284--3156378 Score: 102
Period size: 31 Copynumber: 3.1 Consensus size: 31
3156274 GGTGCTGTCT
* *
3156284 ACTTGTGCGGGCATTGACTAGGGTGCCACCA
1 ACTTGTGCGAGCATTGACTAGGGTGCCGCCA
** * ** *
3156315 ACTCAT-CTAGTTTTGACTTGGGTGCCGCCA
1 ACTTGTGCGAGCATTGACTAGGGTGCCGCCA
*
3156345 ACTTGTGCGAGCATTCACTAGGGTGCCGCCA
1 ACTTGTGCGAGCATTGACTAGGGTGCCGCCA
3156376 ACT
1 ACT
3156379 CATTTGGGCT
Statistics
Matches: 48, Mismatches: 15, Indels: 2
0.74 0.23 0.03
Matches are distributed among these distances:
30 22 0.46
31 26 0.54
ACGTcount: A:0.19, C:0.27, G:0.27, T:0.26
Consensus pattern (31 bp):
ACTTGTGCGAGCATTGACTAGGGTGCCGCCA
Found at i:3156490 original size:31 final size:31
Alignment explanation
Indices: 3156455--3156536 Score: 112
Period size: 31 Copynumber: 2.6 Consensus size: 31
3156445 CAAACTTACA
* *
3156455 TGCCAACAACTTGTGTGGGCTTTGACTTA-GG
1 TGCCACCAACTTATGTGGGCTTTGAC-TACGG
*
3156486 TGCCACCAACTTATGCGGGCTTTGACTACGG
1 TGCCACCAACTTATGTGGGCTTTGACTACGG
*
3156517 TGCCACCAACTCATGTGGGC
1 TGCCACCAACTTATGTGGGC
3156537 CTTAACATCC
Statistics
Matches: 45, Mismatches: 5, Indels: 2
0.87 0.10 0.04
Matches are distributed among these distances:
30 2 0.04
31 43 0.96
ACGTcount: A:0.20, C:0.27, G:0.27, T:0.27
Consensus pattern (31 bp):
TGCCACCAACTTATGTGGGCTTTGACTACGG
Found at i:3156526 original size:149 final size:149
Alignment explanation
Indices: 3156326--3158264 Score: 1697
Period size: 149 Copynumber: 13.0 Consensus size: 149
3156316 CTCATCTAGT
* * * *
3156326 TTTGACTTGGGTGCCGCCAACTTGTGCGAGCATTCACTAGGGTGCCGCCAACTCATTTGGGCTTT
1 TTTGACTTGGGTGCCGCCAACTTGTGCGAGCTTTGACTAGGGTGCCACCAACTCATGTGGGCTTT
* * * * * *
3156391 GACATTCTAAGACTTATCCTCCTTAGACAGGTGCCGACTAATGTGGGCTTGACTCAAACTTACAT
66 GACATTCTAAGGCTTAACCTCCTTAGACAGGTGCCAACTAATGTGGACTTGACTCGAACTTAGAT
* *
3156456 GCCAACAACTTGTGTGGGC
131 GCCACCAACTCGTGTGGGC
* * * * * *
3156475 TTTGACTTAGGTGCCACCAACTTATGCGGGCTTTGACTACGGTGCCACCAACTCATGTGGGCCTT
1 TTTGACTTGGGTGCCGCCAACTTGTGCGAGCTTTGACTAGGGTGCCACCAACTCATGTGGGCTTT
* * * * * * * * * * *
3156540 AACATCCTAAGGCTTGATCTCCTTAGATAGGTGCTAAGTAATTTGGACTTCACTCAAACGTT-GG
66 GACATTCTAAGGCTTAACCTCCTTAGACAGGTGCCAACTAATGTGGACTTGACTCGAAC-TTAGA
* * *
3156604 TGCCACCAACTCATCTAGGC
130 TGCCACCAACTCGTGTGGGC
* * * *
3156624 TTTGACTAGGGAGCCGCCAACTTGTACGAGCTTTGACTAGGGTGCCACCAACTCATGTGGGCCTT
1 TTTGACTTGGGTGCCGCCAACTTGTGCGAGCTTTGACTAGGGTGCCACCAACTCATGTGGGCTTT
* * * * * *
3156689 GACATTCTAAGGCTTAACCTCTTTAGACAGCTACCAACTAATGTGGACTTGACTTGAACTTTGGT
66 GACATTCTAAGGCTTAACCTCCTTAGACAGGTGCCAACTAATGTGGACTTGACTCGAACTTAGAT
* *
3156754 GCCACCAACTTGTGTAGGC
131 GCCACCAACTCGTGTGGGC
* * * * * * *
3156773 TTTGACTCGGGTGCCTCAAACTTGTGC-AGGCTTTGACTAGGGTGTCACCACCTCGTGTGAGCTT
1 TTTGACTTGGGTGCCGCCAACTTGTGCGA-GCTTTGACTAGGGTGCCACCAACTCATGTGGGCTT
* * * * * * * *
3156837 TGACATTCTAAGTCTTAACCTTCTTAGATAGGTCCCAGCTAATGTAGG-CTTTAGTCAAACTTAG
65 TGACATTCTAAGGCTTAACCTCCTTAGACAGGTGCCAACTAATGT-GGACTTGACTCGAACTTA-
* * *
3156901 GA-GCTACCAACTCGCGTGGGT
128 GATGCCACCAACTCGTGTGGGC
* * * * * * *
3156922 TTTGACTCGGGTGCCGCCAACTTGTGTGTGCTTTAATTA-GGTGGCCACCAACCCATGTAGGCTT
1 TTTGACTTGGGTGCCGCCAACTTGTGCGAGCTTTGACTAGGGT-GCCACCAACTCATGTGGGCTT
* * * * *
3156986 TGACACTCTAAGGCTTAACCTCCTTAGACAGGTGGCAACCAATGTGGACTTGACTCAAACTTATA
65 TGACATTCTAAGGCTTAACCTCCTTAGACAGGTGCCAACTAATGTGGACTTGACTCGAACTTAGA
** *
3157051 TGCCACCAACTCACGTGGGT
130 TGCCACCAACTCGTGTGGGC
* * * * * **
3157071 TTTGACTCGGTTGCCGCCAACTTGTGTGGGCTTTGACTAGGGTGCCACCAACTTATGTGATCTTT
1 TTTGACTTGGGTGCCGCCAACTTGTGCGAGCTTTGACTAGGGTGCCACCAACTCATGTGGGCTTT
* * * * * * *
3157136 CACATTCTAAGGCTTGACATCCTTAAACATGTGCCAACTAATTTGGACTTGACTCGAA--TACAA
66 GACATTCTAAGGCTTAACCTCCTTAGACAGGTGCCAACTAATGTGGACTTGACTCGAACTTA-GA
* * *
3157199 GTGCCACCAACTTGTGCGAGC
130 -TGCCACCAACTCGTGTGGGC
* * * * * *
3157220 TTTGACTCGGGTACTGCCAACTTGTGCGAGCTTTGACTAGGGTGCCACCAGCTCTTGTGGGCATT
1 TTTGACTTGGGTGCCGCCAACTTGTGCGAGCTTTGACTAGGGTGCCACCAACTCATGTGGGCTTT
* ** * ** * *
3157285 GACAATCTAAGTATTAACCGT-CTCAGGTAGGTGCCAACTAATGTTGACCTGACTCGAACTTA-A
66 GACATTCTAAGGCTTAACC-TCCTTAGACAGGTGCCAACTAATGTGGACTTGACTCGAACTTAGA
*
3157348 GTGCCACCAACTCGTATGGGC
130 -TGCCACCAACTCGTGTGGGC
* * ** * * * * * * *
3157369 TTTGACTCGGGTGCTGCCAACAAGTGTGGGCTTTGACTAAGCTGCTACCAACTCGTGTGGGCTCT
1 TTTGACTTGGGTGCCGCCAACTTGTGCGAGCTTTGACTAGGGTGCCACCAACTCATGTGGGCTTT
* * * * * * * *
3157434 AACATTCTAAGGCTTGACCTTCTTAGACCGGTGCCAACTAAT-TTGACATGACACGAACATT-GT
66 GACATTCTAAGGCTTAACCTCCTTAGACAGGTGCCAACTAATGTGGACTTGACTCGAAC-TTAGA
3157497 TGCCACCAACTCGTGTGGGC
130 TGCCACCAACTCGTGTGGGC
* * * * *
3157517 TTTGACTCGTGTGCTGCCCACTTGTACGAGCTTTGACTAGGGTGCCA-CAACTCATGTGGGCTTT
1 TTTGACTTGGGTGCCGCCAACTTGTGCGAGCTTTGACTAGGGTGCCACCAACTCATGTGGGCTTT
* * * * * * *
3157581 AACATTCTAAGGCTTGACATCCTCAAACAGGTGCCAACTAATTTGGACTTAACTCGAA-TGTA-A
66 GACATTCTAAGGCTTAACCTCCTTAGACAGGTGCCAACTAATGTGGACTTGACTCGAACT-TAGA
** *
3157644 GTGCCACCAACTCGTACGAGC
130 -TGCCACCAACTCGTGTGGGC
* * * *
3157665 TTTGACTTGGGTACCGCCAACTTGTGCGAGCTTTGACTAGGGTGCCATCAGCTCATTTGGGCTTT
1 TTTGACTTGGGTGCCGCCAACTTGTGCGAGCTTTGACTAGGGTGCCACCAACTCATGTGGGCTTT
* * * * * * *
3157730 GACATTCTAAGGCTTAA-CTGTCTCA-AGTATGTGCCAAATAATATGGACCTGACTCGAACTTA-
66 GACATTCTAAGGCTTAACCT-CCTTAGA-CAGGTGCCAACTAATGTGGACTTGACTCGAACTTAG
* *
3157792 AGTGCTACCAACTCGTATGGGC
129 A-TGCCACCAACTCGTGTGGGC
* *** * * * * * * * *
3157814 TTTAACTCAAGTGCTGCCAACATGTGTGGGCTTTGACTAAGATGCTACCAACTCGTGTGGGCTTT
1 TTTGACTTGGGTGCCGCCAACTTGTGCGAGCTTTGACTAGGGTGCCACCAACTCATGTGGGCTTT
* * * * * *
3157879 AACATTCTAAGGCTTGACCTCCTTAGACCGGTGCAAACTAATTTGGACTTGACTCGAACATT-GG
66 GACATTCTAAGGCTTAACCTCCTTAGACAGGTGCCAACTAATGTGGACTTGACTCGAAC-TTAGA
3157943 TGCCACCAACTCGTGTGGGC
130 TGCCACCAACTCGTGTGGGC
* * * * * *
3157963 TTTGACTCGGGTGCTGCCAACTTGTGTGAGCTTTAACTAGGATGCTACCAACTCATGTGGGCTTT
1 TTTGACTTGGGTGCCGCCAACTTGTGCGAGCTTTGACTAGGGTGCCACCAACTCATGTGGGCTTT
* * * * * * * * * * *
3158028 GATATTCTAGGGCTTAAACTCCTTAAATAGCTGCCAAATAATGCGGACTTGACTTGTACTTAGGT
66 GACATTCTAAGGCTTAACCTCCTTAGACAGGTGCCAACTAATGTGGACTTGACTCGAACTTAGAT
3158093 GCCACCAACTCGTGTGGGC
131 GCCACCAACTCGTGTGGGC
* * * * * * * *
3158112 TTTGACTCT--ATGCTGCCAACTTGTGCGGGGTTTGACTAGTGTGCCACCAACTCGTCTCGGCTT
1 TTTGACT-TGGGTGCCGCCAACTTGTGCGAGCTTTGACTAGGGTGCCACCAACTCATGTGGGCTT
* * * *
3158175 TGACATT-TGTAGGCTTAACCTCCTTAGACAGGAGCCAACTAATGTGGATTTGACTCGAACGTAG
65 TGACATTCT-AAGGCTTAACCTCCTTAGACAGGTGCCAACTAATGTGGACTTGACTCGAACTTAG
** * * *
3158239 GCGCTACCAACTCCTGCGGGC
129 ATGCCACCAACTCGTGTGGGC
3158260 TTTGA
1 TTTGA
3158265 TTAAGGTATC
Statistics
Matches: 1440, Mismatches: 317, Indels: 67
0.79 0.17 0.04
Matches are distributed among these distances:
146 1 0.00
147 56 0.04
148 267 0.19
149 1099 0.76
150 15 0.01
151 2 0.00
ACGTcount: A:0.23, C:0.25, G:0.23, T:0.29
Consensus pattern (149 bp):
TTTGACTTGGGTGCCGCCAACTTGTGCGAGCTTTGACTAGGGTGCCACCAACTCATGTGGGCTTT
GACATTCTAAGGCTTAACCTCCTTAGACAGGTGCCAACTAATGTGGACTTGACTCGAACTTAGAT
GCCACCAACTCGTGTGGGC
Found at i:3156691 original size:31 final size:31
Alignment explanation
Indices: 3156602--3156691 Score: 94
Period size: 31 Copynumber: 2.9 Consensus size: 31
3156592 CTCAAACGTT
* *
3156602 GGTGCCACCAACTCATCTAGGCTTTGACTAG
1 GGTGCCACCAACTCATGTGGGCTTTGACTAG
* * *
3156633 GGAGCCGCCAACT--TGTACGAGCTTTGACTAG
1 GGTGCCACCAACTCATGT--GGGCTTTGACTAG
*
3156664 GGTGCCACCAACTCATGTGGGCCTTGAC
1 GGTGCCACCAACTCATGTGGGCTTTGAC
3156692 ATTCTAAGGC
Statistics
Matches: 46, Mismatches: 9, Indels: 8
0.73 0.14 0.13
Matches are distributed among these distances:
29 2 0.04
31 41 0.89
33 3 0.07
ACGTcount: A:0.21, C:0.29, G:0.27, T:0.23
Consensus pattern (31 bp):
GGTGCCACCAACTCATGTGGGCTTTGACTAG
Found at i:3156795 original size:31 final size:31
Alignment explanation
Indices: 3156751--3156816 Score: 96
Period size: 31 Copynumber: 2.1 Consensus size: 31
3156741 CTTGAACTTT
* * *
3156751 GGTGCCACCAACTTGTGTAGGCTTTGACTCG
1 GGTGCCACAAACTTGTGCAGGCTTTGACTAG
*
3156782 GGTGCCTCAAACTTGTGCAGGCTTTGACTAG
1 GGTGCCACAAACTTGTGCAGGCTTTGACTAG
3156813 GGTG
1 GGTG
3156817 TCACCACCTC
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.17, C:0.23, G:0.32, T:0.29
Consensus pattern (31 bp):
GGTGCCACAAACTTGTGCAGGCTTTGACTAG
Found at i:3157100 original size:31 final size:31
Alignment explanation
Indices: 3157051--3157129 Score: 95
Period size: 31 Copynumber: 2.5 Consensus size: 31
3157041 CAAACTTATA
* * * * *
3157051 TGCCACCAACTCACGTGGGTTTTGACTCGGT
1 TGCCACCAACTTATGTGGGCTTTGACTAGGG
* *
3157082 TGCCGCCAACTTGTGTGGGCTTTGACTAGGG
1 TGCCACCAACTTATGTGGGCTTTGACTAGGG
3157113 TGCCACCAACTTATGTG
1 TGCCACCAACTTATGTG
3157130 ATCTTTCACA
Statistics
Matches: 39, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
31 39 1.00
ACGTcount: A:0.16, C:0.27, G:0.28, T:0.29
Consensus pattern (31 bp):
TGCCACCAACTTATGTGGGCTTTGACTAGGG
Found at i:3157175 original size:447 final size:447
Alignment explanation
Indices: 3156326--3158251 Score: 1873
Period size: 447 Copynumber: 4.3 Consensus size: 447
3156316 CTCATCTAGT
* * * * * *
3156326 TTTGACTTGGGTGCCGCCAACTTGTGCGAGCATTCACTAGGGTGCCGCCAACTCATTTGGGCTTT
1 TTTGACTCGGGTGCCTCCAACTTGTGCGAGCTTTGACTAGGGTGCCACCAACTCATGTGGGCTTT
* * * * * *
3156391 GACATTCTAAGACTTATCCTCCTTAGACAGGTGCCGACTAATGTGGGCTTGACTCAAACTTACA-
66 GACATTCTAAGGCTTAACCTTCTTAGATAGGTGCCAACTAATGT-GGCTTGACTCGAACTTA-AG
* * * * * * * * * * * *
3156455 TGCCAACAACTTGTGTGGGCTTTGACTTAGGTGCCACCAACTTATGCGGGCTTTGACTACGGTGC
129 AGCTACCAACTCGTATGGGCTTTGACTCAGGTGCCGCCAACATGTGTGGGCTTTGAATAAGGTGC
* * * * * *
3156520 CACCAACTCATGTGGGCCTTAACATCCTAAGGCTTGATCTCCTTAGATAGGTGCTAAGTAATTTG
194 CACCAACTCATGTGGGCTTTAACATTCTAAGGCTTGACCTCCTTAGACAGGTGCAAACTAATTTG
* * * * *
3156585 GACTTCACTCAAACGTTGGTGCCACCAACTCATC-TAGGCTTTGACTAGGGAGCCGCCAACTTGT
259 GACTTGACTCAAACATTGGTGCCACCAACTCA-CGTGGGCTTTGACTCGGGTGCCGCCAACTTGT
* * * *
3156649 ACGAGCTTTGACTAGGGTGCCACCAACTCATGTGGGCCTTGACATTCTAAGGCTTAACCTCTTTA
323 ACGAGCTTTGACTAGGGTGCCACCAACTCATGTGGGCTTTGACATTCTAAGGCTTGACATCCTTA
* * * **
3156714 GACAGCTACCAACTAATGTGGACTTGACTTGAACT-TTGGTGCCACCAACTTGTGTAG-GC
388 AACAGCTGCCAACTAATGTGGACTTGACTCGAA-TATAAGTGCCACCAACTTGTGTAGAGC
* * * * *
3156773 TTTGACTCGGGTGCCTCAAACTTGTGC-AGGCTTTGACTAGGGTGTCACCACCTCGTGTGAGCTT
1 TTTGACTCGGGTGCCTCCAACTTGTGCGA-GCTTTGACTAGGGTGCCACCAACTCATGTGGGCTT
* * * * * * *
3156837 TGACATTCTAAGTCTTAACCTTCTTAGATAGGTCCCAGCTAATGTAGGCTTTAGTCAAACTTAGG
65 TGACATTCTAAGGCTTAACCTTCTTAGATAGGTGCCAACTAATGT-GGCTTGACTCGAACTTAAG
** * * * * *
3156902 AGCTACCAACTCGCGTGGGTTTTGACTCGGGTGCCGCCAACTTGTGTGTGCTTT-AATTAGGTGG
129 AGCTACCAACTCGTATGGGCTTTGACTCAGGTGCCGCCAACATGTGTGGGCTTTGAATAAGGT-G
* * * * * * *
3156966 CCACCAACCCATGTAGGCTTTGACACTCTAAGGCTTAACCTCCTTAGACAGGTGGC-AACCAATG
193 CCACCAACTCATGTGGGCTTTAACATTCTAAGGCTTGACCTCCTTAGACAGGT-GCAAACTAATT
** * *
3157030 TGGACTTGACTCAAAC-TTATATGCCACCAACTCACGTGGGTTTTGACTCGGTTGCCGCCAACTT
257 TGGACTTGACTCAAACATT-GGTGCCACCAACTCACGTGGGCTTTGACTCGGGTGCCGCCAACTT
** * * ** *
3157094 GTGTGGGCTTTGACTAGGGTGCCACCAACTTATGTGATCTTTCACATTCTAAGGCTTGACATCCT
321 GTACGAGCTTTGACTAGGGTGCCACCAACTCATGTGGGCTTTGACATTCTAAGGCTTGACATCCT
* * *
3157159 TAAACATG-TGCCAACTAATTTGGACTTGACTCGAATACAAGTGCCACCAACTTGTG-CGAGC
386 TAAACA-GCTGCCAACTAATGTGGACTTGACTCGAATATAAGTGCCACCAACTTGTGTAGAGC
* * * *
3157220 TTTGACTCGGGT-ACTGCCAACTTGTGCGAGCTTTGACTAGGGTGCCACCAGCTCTTGTGGGCAT
1 TTTGACTCGGGTGCCT-CCAACTTGTGCGAGCTTTGACTAGGGTGCCACCAACTCATGTGGGCTT
* ** * * * * *
3157284 TGACAATCTAAGTATTAACCGTCTCAGGTAGGTGCCAACTAATGTTGACCTGACTCGAACTTAAG
65 TGACATTCTAAGGCTTAACCTTCTTAGATAGGTGCCAACTAATG-TGGCTTGACTCGAACTTAAG
* * * * * * *
3157349 TGCCACCAACTCGTATGGGCTTTGACTCGGGTGCTGCCAACAAGTGTGGGCTTTGACTAAGCTGC
129 AGCTACCAACTCGTATGGGCTTTGACTCAGGTGCCGCCAACATGTGTGGGCTTTGAATAAGGTGC
* * * * * *
3157414 TACCAACTCGTGTGGGCTCTAACATTCTAAGGCTTGACCTTCTTAGACCGGTGCCAACTAATTT-
194 CACCAACTCATGTGGGCTTTAACATTCTAAGGCTTGACCTCCTTAGACAGGTGCAAACTAATTTG
* * * * ** * * *
3157478 GACATGACACGAACATTGTTGCCACCAACTCGTGTGGGCTTTGACTCGTGTGCTGCCCACTTGTA
259 GACTTGACTCAAACATTGGTGCCACCAACTCACGTGGGCTTTGACTCGGGTGCCGCCAACTTGTA
* *
3157543 CGAGCTTTGACTAGGGTGCCA-CAACTCATGTGGGCTTTAACATTCTAAGGCTTGACATCCTCAA
324 CGAGCTTTGACTAGGGTGCCACCAACTCATGTGGGCTTTGACATTCTAAGGCTTGACATCCTTAA
* * * * *
3157607 ACAGGTGCCAACTAATTTGGACTTAACTCGAATGTAAGTGCCACCAAC-T-CGTACGAGC
389 ACAGCTGCCAACTAATGTGGACTTGACTCGAATATAAGTGCCACCAACTTGTGTA-GAGC
* * * * * *
3157665 TTTGACTTGGGTACCGCCAACTTGTGCGAGCTTTGACTAGGGTGCCATCAGCTCATTTGGGCTTT
1 TTTGACTCGGGTGCCTCCAACTTGTGCGAGCTTTGACTAGGGTGCCACCAACTCATGTGGGCTTT
* * * * *
3157730 GACATTCTAAGGCTTAA-CTGTCTCA-AGTATGTGCCAAATAATATGGACCTGACTCGAACTTAA
66 GACATTCTAAGGCTTAACCT-TCTTAGA-TAGGTGCCAACTAATGTGG-CTTGACTCGAACTTAA
* * * * * *
3157793 GTGCTACCAACTCGTATGGGCTTTAACTCAAGTGCTGCCAACATGTGTGGGCTTTGACTAAGATG
128 GAGCTACCAACTCGTATGGGCTTTGACTCAGGTGCCGCCAACATGTGTGGGCTTTGAATAAGGTG
* * *
3157858 CTACCAACTCGTGTGGGCTTTAACATTCTAAGGCTTGACCTCCTTAGACCGGTGCAAACTAATTT
193 CCACCAACTCATGTGGGCTTTAACATTCTAAGGCTTGACCTCCTTAGACAGGTGCAAACTAATTT
* ** *
3157923 GGACTTGACTCGAACATTGGTGCCACCAACTCGTGTGGGCTTTGACTCGGGTGCTGCCAACTTGT
258 GGACTTGACTCAAACATTGGTGCCACCAACTCACGTGGGCTTTGACTCGGGTGCCGCCAACTTGT
** * * * * * *
3157988 GTGAGCTTTAACTAGGATGCTACCAACTCATGTGGGCTTTGATATTCTAGGGCTT-AAACTCCTT
323 ACGAGCTTTGACTAGGGTGCCACCAACTCATGTGGGCTTTGACATTCTAAGGCTTGACA-TCCTT
* * * * * * * *
3158052 AAATAGCTGCCAAATAATGCGGACTTGACTTGTACT-TAGGTGCCACCAACTCGTGT-GGGC
387 AAACAGCTGCCAACTAATGTGGACTTGACTCG-AATATAAGTGCCACCAACTTGTGTAGAGC
** * * * * * *
3158112 TTTGACTC-TATG-CTGCCAACTTGTGCGGGGTTTGACTAGTGTGCCACCAACTCGTCTCGGCTT
1 TTTGACTCGGGTGCCT-CCAACTTGTGCGAGCTTTGACTAGGGTGCCACCAACTCATGTGGGCTT
* * * * * * *
3158175 TGACATT-TGTAGGCTTAACCTCCTTAGACAGGAGCCAACTAATGTGGATTTGACTCGAACGTAG
65 TGACATTCT-AAGGCTTAACCTTCTTAGATAGGTGCCAACTAATGTGG-CTTGACTCGAACTTAA
*
3158239 GCGCTACCAACTC
128 GAGCTACCAACTC
3158252 CTGCGGGCTT
Statistics
Matches: 1224, Mismatches: 223, Indels: 65
0.81 0.15 0.04
Matches are distributed among these distances:
443 1 0.00
444 5 0.00
445 312 0.25
446 260 0.21
447 632 0.52
448 12 0.01
449 2 0.00
ACGTcount: A:0.23, C:0.25, G:0.23, T:0.29
Consensus pattern (447 bp):
TTTGACTCGGGTGCCTCCAACTTGTGCGAGCTTTGACTAGGGTGCCACCAACTCATGTGGGCTTT
GACATTCTAAGGCTTAACCTTCTTAGATAGGTGCCAACTAATGTGGCTTGACTCGAACTTAAGAG
CTACCAACTCGTATGGGCTTTGACTCAGGTGCCGCCAACATGTGTGGGCTTTGAATAAGGTGCCA
CCAACTCATGTGGGCTTTAACATTCTAAGGCTTGACCTCCTTAGACAGGTGCAAACTAATTTGGA
CTTGACTCAAACATTGGTGCCACCAACTCACGTGGGCTTTGACTCGGGTGCCGCCAACTTGTACG
AGCTTTGACTAGGGTGCCACCAACTCATGTGGGCTTTGACATTCTAAGGCTTGACATCCTTAAAC
AGCTGCCAACTAATGTGGACTTGACTCGAATATAAGTGCCACCAACTTGTGTAGAGC
Found at i:3157420 original size:31 final size:31
Alignment explanation
Indices: 3157364--3157431 Score: 82
Period size: 31 Copynumber: 2.2 Consensus size: 31
3157354 CCAACTCGTA
** * *
3157364 TGGGCTTTGACTCGGGTGCTGCCAACAAGTG
1 TGGGCTTTGACTAAGCTGCTACCAACAAGTG
**
3157395 TGGGCTTTGACTAAGCTGCTACCAACTCGTG
1 TGGGCTTTGACTAAGCTGCTACCAACAAGTG
3157426 TGGGCT
1 TGGGCT
3157432 CTAACATTCT
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.16, C:0.24, G:0.32, T:0.28
Consensus pattern (31 bp):
TGGGCTTTGACTAAGCTGCTACCAACAAGTG
Found at i:3157834 original size:31 final size:30
Alignment explanation
Indices: 3157790--3157881 Score: 123
Period size: 31 Copynumber: 3.0 Consensus size: 30
3157780 GACTCGAACT
*
3157790 TAAGTGCTACCAACTCGTATGGGCTTTAAC
1 TAAGTGCTACCAACTCGTGTGGGCTTTAAC
* *
3157820 TCAAGTGCTGCCAACAT-GTGTGGGCTTTGAC
1 T-AAGTGCTACCAAC-TCGTGTGGGCTTTAAC
3157851 TAAGATGCTACCAACTCGTGTGGGCTTTAAC
1 TAAG-TGCTACCAACTCGTGTGGGCTTTAAC
3157882 ATTCTAAGGC
Statistics
Matches: 53, Mismatches: 5, Indels: 7
0.82 0.08 0.11
Matches are distributed among these distances:
30 5 0.09
31 47 0.89
32 1 0.02
ACGTcount: A:0.24, C:0.23, G:0.24, T:0.29
Consensus pattern (30 bp):
TAAGTGCTACCAACTCGTGTGGGCTTTAAC
Found at i:3157976 original size:31 final size:31
Alignment explanation
Indices: 3157941--3158029 Score: 106
Period size: 31 Copynumber: 2.9 Consensus size: 31
3157931 CTCGAACATT
* *
3157941 GGTGCCACCAACTCGTGTGGGCTTTGACTCG
1 GGTGCTACCAACTCGTGTGGGCTTTGACTAG
* * * *
3157972 GGTGCTGCCAACTTGTGTGAGCTTTAACTAG
1 GGTGCTACCAACTCGTGTGGGCTTTGACTAG
* *
3158003 GATGCTACCAACTCATGTGGGCTTTGA
1 GGTGCTACCAACTCGTGTGGGCTTTGA
3158030 TATTCTAGGG
Statistics
Matches: 46, Mismatches: 12, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
31 46 1.00
ACGTcount: A:0.18, C:0.24, G:0.29, T:0.29
Consensus pattern (31 bp):
GGTGCTACCAACTCGTGTGGGCTTTGACTAG
Found at i:3158365 original size:61 final size:61
Alignment explanation
Indices: 3158291--3158407 Score: 144
Period size: 61 Copynumber: 1.9 Consensus size: 61
3158281 TTGGGTAGGC
* * * * * * *
3158291 TTTGACTTAGGTGCTGTCTACTTGTATGGGCTTTGACTAGGGTGCCACCAACTCATCTAGT
1 TTTGACTTAGGTGCCGCCAACTTGTACGAGCATTCACTAGGGTGCCACCAACTCATCTAGT
* * *
3158352 TTTGACTTGGGTGCCGCCAACTTGTGCGAGCATTCACTAGGGTGCCGCCAACTCAT
1 TTTGACTTAGGTGCCGCCAACTTGTACGAGCATTCACTAGGGTGCCACCAACTCAT
3158408 TTGGGCTTTG
Statistics
Matches: 46, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
61 46 1.00
ACGTcount: A:0.18, C:0.25, G:0.26, T:0.32
Consensus pattern (61 bp):
TTTGACTTAGGTGCCGCCAACTTGTACGAGCATTCACTAGGGTGCCACCAACTCATCTAGT
Found at i:3158522 original size:31 final size:31
Alignment explanation
Indices: 3158481--3158553 Score: 85
Period size: 31 Copynumber: 2.4 Consensus size: 31
3158471 CAAACTTACA
* * * *
3158481 TGCCAACAACTTGTGTAGGCTTTGATTTA-GG
1 TGCCACCAACTTATGCAGGCTTTGA-CTACGG
*
3158512 TGCCACCAACTTATGCGGGCTTTGACTACGG
1 TGCCACCAACTTATGCAGGCTTTGACTACGG
3158543 TGCCACCAACT
1 TGCCACCAACT
3158554 CATGTGGGCC
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
30 2 0.06
31 34 0.94
ACGTcount: A:0.22, C:0.26, G:0.23, T:0.29
Consensus pattern (31 bp):
TGCCACCAACTTATGCAGGCTTTGACTACGG
Found at i:3158555 original size:149 final size:149
Alignment explanation
Indices: 3158352--3160260 Score: 1754
Period size: 149 Copynumber: 12.8 Consensus size: 149
3158342 CTCATCTAGT
* * * * *
3158352 TTTGACTTGGGTGCCGCCAACTTGTGCGAGCATTCACTAGGGTGCCGCCAACTCATTTGGGCTTT
1 TTTGACTCGGGTGCCGCCAACTTGTGCGAGCTTTGACTAGGGTGCCACCAACTCATGTGGGCTTT
* * * * *
3158417 GACATTCTAAGGCTTATCCTCCTTAGACAGGTGCCGACTAATGTGGGCTTGACTCAAACTTACAT
66 GACATTCTAAGGCTTAACCTCCTTAGACAGGTGCCAACTAATGTGGACTTGACTCGAACTTAGAT
* * *
3158482 GCCAACAACTTGTGTAGGC
131 GCCACCAACTCGTGTGGGC
* ** * * * * *
3158501 TTTGATTTAGGTGCCACCAACTTATGCGGGCTTTGACTACGGTGCCACCAACTCATGTGGGCCTT
1 TTTGACTCGGGTGCCGCCAACTTGTGCGAGCTTTGACTAGGGTGCCACCAACTCATGTGGGCTTT
* * * * * * * * *
3158566 AACATTCTAAGGCTTGATCTCCTTAGATAGGTGCTAACTAATTTGGACTTCACTCAAACGTT-GG
66 GACATTCTAAGGCTTAACCTCCTTAGACAGGTGCCAACTAATGTGGACTTGACTCGAAC-TTAGA
* * *
3158630 TGCCACCAACTCATCTAGGC
130 TGCCACCAACTCGTGTGGGC
* * * *
3158650 TTTGACTAGGGAGCCGCCAACTTGTACGAGCTTTGACTAGGGTGCCACCAACTCATGTGGGCCTT
1 TTTGACTCGGGTGCCGCCAACTTGTGCGAGCTTTGACTAGGGTGCCACCAACTCATGTGGGCTTT
* * * * * * * * *
3158715 GACATTCTAAGGCATAACCTCTTTAGACAGCTACCAACTATTGTGGACTTGAGTTGAACTTTGGT
66 GACATTCTAAGGCTTAACCTCCTTAGACAGGTGCCAACTAATGTGGACTTGACTCGAACTTAGAT
* *
3158780 GCCACCAACTTGTGTAGGC
131 GCCACCAACTCGTGTGGGC
* * * * * *
3158799 TTTGACTCGGGTGCCTCAAACTTGTGC-AGGCTTTGACTAGGGTGTCACCACCTCGTGTGAGCTT
1 TTTGACTCGGGTGCCGCCAACTTGTGCGA-GCTTTGACTAGGGTGCCACCAACTCATGTGGGCTT
* * * * * * * *
3158863 TGACATTCTAAGTCTTAACCTTCTTAGATAGGTCCCAGCTAATGTAGG-CTTTAGTCAAACTTAG
65 TGACATTCTAAGGCTTAACCTCCTTAGACAGGTGCCAACTAATGT-GGACTTGACTCGAACTTA-
* * *
3158927 GA-GCTACCAACTCGCGTGGGT
128 GATGCCACCAACTCGTGTGGGC
* * * * * *
3158948 TTTGACTCGGGTGCCGCCAACTTGTGTGTGCTTTAATTA-GGTAGCCACCAACCCATGTAGGCTT
1 TTTGACTCGGGTGCCGCCAACTTGTGCGAGCTTTGACTAGGGT-GCCACCAACTCATGTGGGCTT
* * * * *
3159012 TGACACTCTAAGGCTTAACCTCCTTAGACAGGTGGCAACCAATGTGGACTTGACTCAAACTTATA
65 TGACATTCTAAGGCTTAACCTCCTTAGACAGGTGCCAACTAATGTGGACTTGACTCGAACTTAGA
** *
3159077 TGCCACCAACTCACGTGGGT
130 TGCCACCAACTCGTGTGGGC
* * * **
3159097 TTTGACTCGGGTGCCGCCAACTTGTGTGGGCTTTGACTAGGGTGCCACCAACTTATGTGATCTTT
1 TTTGACTCGGGTGCCGCCAACTTGTGCGAGCTTTGACTAGGGTGCCACCAACTCATGTGGGCTTT
* * * * * * *
3159162 CACATTCTAAGGCTTGACATCCTTAAACATGTGCCAACTAATTTGGACTTGACTCGAA--TACAA
66 GACATTCTAAGGCTTAACCTCCTTAGACAGGTGCCAACTAATGTGGACTTGACTCGAACTTA-GA
* * *
3159225 GTGCCACCAACTTGTGCGAGC
130 -TGCCACCAACTCGTGTGGGC
* * * * *
3159246 TTTGACTCGGGTACTGCCAACTTGTGCGAGCTTTGACTAGGGTGCCACCAGCTCTTGTGGGCATT
1 TTTGACTCGGGTGCCGCCAACTTGTGCGAGCTTTGACTAGGGTGCCACCAACTCATGTGGGCTTT
* * * ** * *
3159311 GACAATCTAAGGATTAACCGT-CTCAGGTAGGTGCCAACTAATGTAGACCTGACTCGAACTTA-A
66 GACATTCTAAGGCTTAACC-TCCTTAGACAGGTGCCAACTAATGTGGACTTGACTCGAACTTAGA
*
3159374 GTGCCACCAACTCGTATGGGC
130 -TGCCACCAACTCGTGTGGGC
** * ** * * * * * * *
3159395 TTTGACTTAGGTGCTGCCAACAAGTGTGGGCTTTGACTAAGCTGCTACCAACTCGTGTGGGCTCT
1 TTTGACTCGGGTGCCGCCAACTTGTGCGAGCTTTGACTAGGGTGCCACCAACTCATGTGGGCTTT
* * * * * * *
3159460 AACATTCTAAGGCTTGACCTTCTTAGACCGGTGCCAACTAAT-TTGACTTGACACGAACATTA-T
66 GACATTCTAAGGCTTAACCTCCTTAGACAGGTGCCAACTAATGTGGACTTGACTCGAAC-TTAGA
3159523 TGCCACCAACTCGTGTGGGC
130 TGCCACCAACTCGTGTGGGC
* * *
3159543 TTTGACTCGGGTGCTGCCCACTTGTACGAGCTTTGACTAGGGTGCCA-CAACTCATGTGGGCTTT
1 TTTGACTCGGGTGCCGCCAACTTGTGCGAGCTTTGACTAGGGTGCCACCAACTCATGTGGGCTTT
* * * * * *
3159607 AACATTCTAAGGCTTGACATCCTCAAACAGGTGCCAACTAATGTGGACTTAACTCGAA-TGTA-A
66 GACATTCTAAGGCTTAACCTCCTTAGACAGGTGCCAACTAATGTGGACTTGACTCGAACT-TAGA
* * *
3159670 GTGCCACAAACTCGTGCGAGC
130 -TGCCACCAACTCGTGTGGGC
* * * *
3159691 TTTGACTTGGGTGCCGCCAACTTGTGCGAGCTTTGACTAGGGTGCCATCAGCTCAGGTGGGCTTT
1 TTTGACTCGGGTGCCGCCAACTTGTGCGAGCTTTGACTAGGGTGCCACCAACTCATGTGGGCTTT
* * * * *
3159756 GACATTCTAAGGCTTAACCGT-CTCA-AGTAGGTGCCAAATAATATGGACCTGACTCGAACTTA-
66 GACATTCTAAGGCTTAACC-TCCTTAGA-CAGGTGCCAACTAATGTGGACTTGACTCGAACTTAG
* * * * *
3159818 AGTACGACCGACTAGTATGGGC
129 A-TGCCACCAACTCGTGTGGGC
** * * * * * * * *
3159840 TTTGACTCATGTGCTGCCAACATGTGTGGGCTTTGACTAAGATGCTACCAACTCGTGTGGGCTTT
1 TTTGACTCGGGTGCCGCCAACTTGTGCGAGCTTTGACTAGGGTGCCACCAACTCATGTGGGCTTT
* * * * * * *
3159905 AACATTATAAGGCTTGACCTCCTTAGACCGGTGCAAACTAATTTGGACTTGACTCGAACATT-GG
66 GACATTCTAAGGCTTAACCTCCTTAGACAGGTGCCAACTAATGTGGACTTGACTCGAAC-TTAGA
*
3159969 TGCCACCAACTCGTGTAGGC
130 TGCCACCAACTCGTGTGGGC
* * * *
3159989 TTTGACTCGGGTGCTGCCAACTTGTGCGAGCTTTAACTAGGATGCTACCAACTCATGTGGGCTTT
1 TTTGACTCGGGTGCCGCCAACTTGTGCGAGCTTTGACTAGGGTGCCACCAACTCATGTGGGCTTT
* * * * * * * * *
3160054 GATATTCTAGGGCTTAACCTCCTTAAATAGCG-GCCAACTAATGCGCACTTGACTTGTACTTAGG
66 GACATTCTAAGGCTTAACCTCCTTAGACAG-GTGCCAACTAATGTGGACTTGACTCGAACTTAGA
3160118 TGCCACCAACTCGTGTGGGC
130 TGCCACCAACTCGTGTGGGC
** * * * * * * *
3160138 TTTGACTC-TATGCTGCCAACTTGTGCGGGGTTTGACTAGTGTGCCGCCAACTCGTCTGGGCTTT
1 TTTGACTCGGGTGCCGCCAACTTGTGCGAGCTTTGACTAGGGTGCCACCAACTCATGTGGGCTTT
* * *
3160202 GACATT-TGTAGGCTTAACCTCCTTAGACAGGAGCCAACTAATGTGGATTTGACTCGAAC
66 GACATTCT-AAGGCTTAACCTCCTTAGACAGGTGCCAACTAATGTGGACTTGACTCGAAC
3160261 GTATACGCTA
Statistics
Matches: 1419, Mismatches: 309, Indels: 65
0.79 0.17 0.04
Matches are distributed among these distances:
146 1 0.00
147 58 0.04
148 245 0.17
149 1098 0.77
150 15 0.01
151 2 0.00
ACGTcount: A:0.23, C:0.25, G:0.24, T:0.29
Consensus pattern (149 bp):
TTTGACTCGGGTGCCGCCAACTTGTGCGAGCTTTGACTAGGGTGCCACCAACTCATGTGGGCTTT
GACATTCTAAGGCTTAACCTCCTTAGACAGGTGCCAACTAATGTGGACTTGACTCGAACTTAGAT
GCCACCAACTCGTGTGGGC
Found at i:3158717 original size:31 final size:31
Alignment explanation
Indices: 3158628--3158717 Score: 94
Period size: 31 Copynumber: 2.9 Consensus size: 31
3158618 CTCAAACGTT
* *
3158628 GGTGCCACCAACTCATCTAGGCTTTGACTAG
1 GGTGCCACCAACTCATGTGGGCTTTGACTAG
* * *
3158659 GGAGCCGCCAACT--TGTACGAGCTTTGACTAG
1 GGTGCCACCAACTCATGT--GGGCTTTGACTAG
*
3158690 GGTGCCACCAACTCATGTGGGCCTTGAC
1 GGTGCCACCAACTCATGTGGGCTTTGAC
3158718 ATTCTAAGGC
Statistics
Matches: 46, Mismatches: 9, Indels: 8
0.73 0.14 0.13
Matches are distributed among these distances:
29 2 0.04
31 41 0.89
33 3 0.07
ACGTcount: A:0.21, C:0.29, G:0.27, T:0.23
Consensus pattern (31 bp):
GGTGCCACCAACTCATGTGGGCTTTGACTAG
Found at i:3158812 original size:31 final size:31
Alignment explanation
Indices: 3158777--3158866 Score: 101
Period size: 31 Copynumber: 2.9 Consensus size: 31
3158767 GTTGAACTTT
*
3158777 GGTGCCACCAACTTGTGTAGGCTTTGACTCG
1 GGTGCCACCAACTTGTGTAGGCTTTGACTAG
* * *
3158808 GGTGCCTCAAACTTGTGCAGGCTTTGACTAG
1 GGTGCCACCAACTTGTGTAGGCTTTGACTAG
* * *
3158839 GGTGTCACCACCTCGTGT-GAGCTTTGAC
1 GGTGCCACCAACTTGTGTAG-GCTTTGAC
3158867 ATTCTAAGTC
Statistics
Matches: 48, Mismatches: 10, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
30 1 0.02
31 47 0.98
ACGTcount: A:0.17, C:0.26, G:0.29, T:0.29
Consensus pattern (31 bp):
GGTGCCACCAACTTGTGTAGGCTTTGACTAG
Found at i:3159126 original size:31 final size:31
Alignment explanation
Indices: 3159077--3159155 Score: 104
Period size: 31 Copynumber: 2.5 Consensus size: 31
3159067 CAAACTTATA
* * * *
3159077 TGCCACCAACTCACGTGGGTTTTGACTCGGG
1 TGCCACCAACTTATGTGGGCTTTGACTAGGG
* *
3159108 TGCCGCCAACTTGTGTGGGCTTTGACTAGGG
1 TGCCACCAACTTATGTGGGCTTTGACTAGGG
3159139 TGCCACCAACTTATGTG
1 TGCCACCAACTTATGTG
3159156 ATCTTTCACA
Statistics
Matches: 40, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 40 1.00
ACGTcount: A:0.16, C:0.27, G:0.29, T:0.28
Consensus pattern (31 bp):
TGCCACCAACTTATGTGGGCTTTGACTAGGG
Found at i:3159415 original size:31 final size:31
Alignment explanation
Indices: 3159371--3159457 Score: 104
Period size: 31 Copynumber: 2.8 Consensus size: 31
3159361 GACTCGAACT
* *
3159371 TAAG-TGCCACCAACTCGTATGGGCTTTGAC
1 TAAGCTGCTACCAACTCGTGTGGGCTTTGAC
* * * **
3159401 TTAGGTGCTGCCAACAAGTGTGGGCTTTGAC
1 TAAGCTGCTACCAACTCGTGTGGGCTTTGAC
3159432 TAAGCTGCTACCAACTCGTGTGGGCT
1 TAAGCTGCTACCAACTCGTGTGGGCT
3159458 CTAACATTCT
Statistics
Matches: 45, Mismatches: 11, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
30 3 0.07
31 42 0.93
ACGTcount: A:0.21, C:0.24, G:0.28, T:0.28
Consensus pattern (31 bp):
TAAGCTGCTACCAACTCGTGTGGGCTTTGAC
Found at i:3159718 original size:31 final size:31
Alignment explanation
Indices: 3159678--3159736 Score: 100
Period size: 31 Copynumber: 1.9 Consensus size: 31
3159668 AAGTGCCACA
*
3159678 AACTCGTGCGAGCTTTGACTTGGGTGCCGCC
1 AACTCGTGCGAGCTTTGACTAGGGTGCCGCC
*
3159709 AACTTGTGCGAGCTTTGACTAGGGTGCC
1 AACTCGTGCGAGCTTTGACTAGGGTGCC
3159737 ATCAGCTCAG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.15, C:0.25, G:0.32, T:0.27
Consensus pattern (31 bp):
AACTCGTGCGAGCTTTGACTAGGGTGCCGCC
Found at i:3159873 original size:31 final size:31
Alignment explanation
Indices: 3159835--3159904 Score: 90
Period size: 31 Copynumber: 2.3 Consensus size: 31
3159825 CCGACTAGTA
* *
3159835 TGGGCTTTGACTCATG-TGCTGCCAACAT-GTG
1 TGGGCTTTGACT-AAGATGCTACCAAC-TCGTG
3159866 TGGGCTTTGACTAAGATGCTACCAACTCGTG
1 TGGGCTTTGACTAAGATGCTACCAACTCGTG
3159897 TGGGCTTT
1 TGGGCTTT
3159905 AACATTATAA
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
30 3 0.09
31 32 0.91
ACGTcount: A:0.17, C:0.21, G:0.29, T:0.33
Consensus pattern (31 bp):
TGGGCTTTGACTAAGATGCTACCAACTCGTG
Found at i:3160002 original size:31 final size:31
Alignment explanation
Indices: 3159967--3160055 Score: 81
Period size: 31 Copynumber: 2.9 Consensus size: 31
3159957 CTCGAACATT
* *
3159967 GGTGCCACCAACTCGTGTAGGCTTTGACTCG
1 GGTGCTACCAACTCGTGTAGGCTTTGACTAG
* * * *
3159998 GGTGCTGCCAACTTGTG-CGAGCTTTAACTAG
1 GGTGCTACCAACTCGTGTAG-GCTTTGACTAG
* * *
3160029 GATGCTACCAACTCATGTGGGCTTTGA
1 GGTGCTACCAACTCGTGTAGGCTTTGA
3160056 TATTCTAGGG
Statistics
Matches: 44, Mismatches: 12, Indels: 4
0.73 0.20 0.07
Matches are distributed among these distances:
30 1 0.02
31 42 0.95
32 1 0.02
ACGTcount: A:0.19, C:0.25, G:0.28, T:0.28
Consensus pattern (31 bp):
GGTGCTACCAACTCGTGTAGGCTTTGACTAG
Found at i:3160157 original size:30 final size:31
Alignment explanation
Indices: 3160118--3160204 Score: 95
Period size: 30 Copynumber: 2.8 Consensus size: 31
3160108 TGTACTTAGG
*
3160118 TGCCACCAACTCGTGTGGGCTTTGACT-CTA
1 TGCCGCCAACTCGTGTGGGCTTTGACTACTA
* * * * * *
3160148 TGCTGCCAACTTGTGCGGGGTTTGACTAGTG
1 TGCCGCCAACTCGTGTGGGCTTTGACTACTA
*
3160179 TGCCGCCAACTCGTCTGGGCTTTGAC
1 TGCCGCCAACTCGTGTGGGCTTTGAC
3160205 ATTTGTAGGC
Statistics
Matches: 44, Mismatches: 12, Indels: 1
0.77 0.21 0.02
Matches are distributed among these distances:
30 22 0.50
31 22 0.50
ACGTcount: A:0.14, C:0.28, G:0.29, T:0.30
Consensus pattern (31 bp):
TGCCGCCAACTCGTGTGGGCTTTGACTACTA
Found at i:3160423 original size:31 final size:31
Alignment explanation
Indices: 3160336--3160430 Score: 84
Period size: 31 Copynumber: 3.1 Consensus size: 31
3160326 GGTGCTGTCT
* *
3160336 ACTTGTGCGGGCATTGACCAGGGTGCCACCA
1 ACTTGTGCGAGCATTGACTAGGGTGCCACCA
** * ** * * *
3160367 ACTCAT-CTAGTTTTGACTTGAGTGCCGCCA
1 ACTTGTGCGAGCATTGACTAGGGTGCCACCA
*
3160397 ACTTGTGCGAGCATTGACTAGGGTGCCTCCA
1 ACTTGTGCGAGCATTGACTAGGGTGCCACCA
3160428 ACT
1 ACT
3160431 CATTTGGGCT
Statistics
Matches: 45, Mismatches: 18, Indels: 2
0.69 0.28 0.03
Matches are distributed among these distances:
30 20 0.44
31 25 0.56
ACGTcount: A:0.20, C:0.27, G:0.26, T:0.26
Consensus pattern (31 bp):
ACTTGTGCGAGCATTGACTAGGGTGCCACCA
Found at i:3160542 original size:31 final size:31
Alignment explanation
Indices: 3160507--3160588 Score: 96
Period size: 31 Copynumber: 2.6 Consensus size: 31
3160497 CAAACTTACA
*
3160507 TGCCAACAACTTGTGTGGGCTTTGACTTA-GG
1 TGCCAACAACTTATGTGGGCTTTGAC-TACGG
*
3160538 TGCC-ACAAACTTATGCGGGCTTTGACTACGG
1 TGCCAAC-AACTTATGTGGGCTTTGACTACGG
* *
3160569 TGCCACCAACTCATGTGGGC
1 TGCCAACAACTTATGTGGGC
3160589 CTTAACATTC
Statistics
Matches: 43, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
30 4 0.09
31 38 0.88
32 1 0.02
ACGTcount: A:0.21, C:0.26, G:0.27, T:0.27
Consensus pattern (31 bp):
TGCCAACAACTTATGTGGGCTTTGACTACGG
Found at i:3160579 original size:149 final size:148
Alignment explanation
Indices: 3160359--3161664 Score: 900
Period size: 149 Copynumber: 8.8 Consensus size: 148
3160349 TTGACCAGGG
* * * *
3160359 TGCCACCAACTCATCTA-GTTTTGACTT-GAGTGCCGCCAACTTGTGCGAGCATTGACTAGGGTG
1 TGCCACCAACTCATGTAGGCTTTGACTTAG-GTGCCGCCAACTTGTGCGGGCTTTGACTAGGGTG
* * * * * *
3160422 CCTCCAACTCATTTGGGCTTTGACATTCTAAGGCTTATCCTCCATAGACAGGTGGCGACTAATGT
65 CCACCAACTCATGTGGGCTTTGACATTCTAAGGCTTAACCTCCTTAGACAGGT-ACAACTAATGT
* * *
3160487 GGGCTTGACTCAAACTTACA
129 GGACTTCACTCAAACTTAGA
* ** * * * * *
3160507 TGCCAACAACTTGTGTGGGCTTTGACTTAGGTGCCACAAACTTATGCGGGCTTTGACTACGGTGC
1 TGCCACCAACTCATGTAGGCTTTGACTTAGGTGCCGCCAACTTGTGCGGGCTTTGACTAGGGTGC
* * * * * *
3160572 CACCAACTCATGTGGGCCTTAACATTCTAAGGCTTGATCTCCTTAGATAGGTACTAACTAATTTG
66 CACCAACTCATGTGGGCTTTGACATTCTAAGGCTTAACCTCCTTAGACAGGTAC-AACTAATGTG
* *
3160637 GACTTCACTCGAACGTT-GG
130 GACTTCACTCAAAC-TTAGA
* * * *
3160656 TGCCACCAACTCATCTAGGCTTTGAC-TAGGGAGCCGCCAACTTGTACGAGCTTTGACTAGGGTG
1 TGCCACCAACTCATGTAGGCTTTGACTTA-GGTGCCGCCAACTTGTGCGGGCTTTGACTAGGGTG
* * *
3160720 CCACCAACTCATGTGGGCCTTGACATTCTAAGGCTTAACCTCTTTAGACAGCTACCAACTAATGT
65 CCACCAACTCATGTGGGCTTTGACATTCTAAGGCTTAACCTCCTTAGACAGGTA-CAACTAATGT
* ** * *
3160785 GGACTTGACTTGAACTTTGG
129 GGACTTCACTCAAACTTAGA
* ** * * *
3160805 TGCCACCAACTTATGTAGGCTTTGACTCGGGTGCCGCAAACTTGTGCAGGCTTTGACTAGGGTGT
1 TGCCACCAACTCATGTAGGCTTTGACTTAGGTGCCGCCAACTTGTGCGGGCTTTGACTAGGGTGC
* ** * * * * * * *
3160870 CACCACCTTGTGTGAGCTTTGACATTCTAAGTCTTAACCTTCTTAGATAGGTTCCAGCTATTGTT
66 CACCAACTCATGTGGGCTTTGACATTCTAAGGCTTAACCTCCTTAGACAGG-TACAACTAATG-T
*
3160935 GG-CTTCAGTCAAACTTAGGA
129 GGACTTCACTCAAACTTA-GA
* ** * * ** *
3160955 -GCTACCAACTCGCGTGGGTTTTGACTCGGGTGCCGCCAACTTGTGTGGGCTTTGACTAGGGTGC
1 TGCCACCAACTCATGTAGGCTTTGACTTAGGTGCCGCCAACTTGTGCGGGCTTTGACTAGGGTGC
* * * * * * * * * * *
3161019 CACCAACTTATGTGAGCTTTAACATTCTAAGGCTTGACATCCTCAAACATGTGCCAGCTAATTTG
66 CACCAACTCATGTGGGCTTTGACATTCTAAGGCTTAACCTCCTTAGACAGGT-ACAACTAATGTG
* *
3161084 GACGTGACTCAAA-TGTA-A
130 GACTTCACTCAAACT-TAGA
** * * * * * * * * * *
3161102 GTGCCACTGACTCATG-CGAGCTTTAACTCATGTACTGCCAACTTGTTCGAGCCTTGACTAAGGT
1 -TGCCACCAACTCATGTAG-GCTTTGACTTAGGTGCCGCCAACTTGTGCGGGCTTTGACTAGGGT
* * * * * *
3161166 GCCACCAGCTCTTGTGGGCTTTGAGACTT-TAAGGCTTAACCGT-CTCA-AGTAGGTGCCAACTA
64 GCCACCAACTCATGTGGGCTTTGACA-TTCTAAGGCTTAACC-TCCTTAGA-CAGGT-ACAACTA
* * *
3161228 ATATGGACCTGACTCAAACTTA-A
125 ATGTGGACTTCACTCAAACTTAGA
* * * * * * * * * * * * *
3161251 GTGCCCCCAACTCGTATGGGCTTCGACTCAAGTGCTGCCAACATGTGTGGGCTTTCACTAAGATG
1 -TGCCACCAACTCATGTAGGCTTTGACTTAGGTGCCGCCAACTTGTGCGGGCTTTGACTAGGGTG
* ** * * * * *
3161316 CTACCAACTTGTGTGGGCTTTAACATTCTAAGGCTTGACCTCCTTAGACTGGTGCCAACTAATTT
65 CCACCAACTCATGTGGGCTTTGACATTCTAAGGCTTAACCTCCTTAGACAGGT-ACAACTAATGT
* *
3161381 GGACTTGACTCGAACATTAG-
129 GGACTTCACTCAAAC-TTAGA
** * * * * * * *
3161401 TGCCACCAACTCGCGTAGGATTTGACTCAGGTGCTGCCCACTTGTGCGAGCTTTAACTAGGATGC
1 TGCCACCAACTCATGTAGGCTTTGACTTAGGTGCCGCCAACTTGTGCGGGCTTTGACTAGGGTGC
* * * * * ** * * *
3161466 TACCAACTCATGTGGGCGTTGATATTCTAGGGCTTAACCTCCTTAAATTGCTGCCAACTAATGCG
66 CACCAACTCATGTGGGCTTTGACATTCTAAGGCTTAACCTCCTTAGACAGGT-ACAACTAATGTG
* * *** *
3161531 CACTTGACTTGTACTTAGG
130 GACTTCACTCAAACTTAGA
* * * *
3161550 TGCCACCAACTCGTGTGGGCTTTGACTCT--GTGCCGCCAACTTGTGCGGGGTTTGACTAGTGTG
1 TGCCACCAACTCATGTAGGCTTTGACT-TAGGTGCCGCCAACTTGTGCGGGCTTTGACTAGGGTG
* *
3161613 CCACCAACTCGTCTGGGCTTTGACATT-TGAAGGCTTAACCTCCTTAGACAGG
65 CCACCAACTCATGTGGGCTTTGACATTCT-AAGGCTTAACCTCCTTAGACAGG
3161665 AGCCAACTAA
Statistics
Matches: 914, Mismatches: 214, Indels: 60
0.77 0.18 0.05
Matches are distributed among these distances:
147 2 0.00
148 98 0.11
149 796 0.87
150 18 0.02
ACGTcount: A:0.23, C:0.25, G:0.23, T:0.29
Consensus pattern (148 bp):
TGCCACCAACTCATGTAGGCTTTGACTTAGGTGCCGCCAACTTGTGCGGGCTTTGACTAGGGTGC
CACCAACTCATGTGGGCTTTGACATTCTAAGGCTTAACCTCCTTAGACAGGTACAACTAATGTGG
ACTTCACTCAAACTTAGA
Found at i:3160743 original size:31 final size:31
Alignment explanation
Indices: 3160654--3160743 Score: 94
Period size: 31 Copynumber: 2.9 Consensus size: 31
3160644 CTCGAACGTT
* *
3160654 GGTGCCACCAACTCATCTAGGCTTTGACTAG
1 GGTGCCACCAACTCATGTGGGCTTTGACTAG
* * *
3160685 GGAGCCGCCAACT--TGTACGAGCTTTGACTAG
1 GGTGCCACCAACTCATGT--GGGCTTTGACTAG
*
3160716 GGTGCCACCAACTCATGTGGGCCTTGAC
1 GGTGCCACCAACTCATGTGGGCTTTGAC
3160744 ATTCTAAGGC
Statistics
Matches: 46, Mismatches: 9, Indels: 8
0.73 0.14 0.13
Matches are distributed among these distances:
29 2 0.04
31 41 0.89
33 3 0.07
ACGTcount: A:0.21, C:0.29, G:0.27, T:0.23
Consensus pattern (31 bp):
GGTGCCACCAACTCATGTGGGCTTTGACTAG
Found at i:3160880 original size:31 final size:31
Alignment explanation
Indices: 3160803--3160881 Score: 95
Period size: 31 Copynumber: 2.5 Consensus size: 31
3160793 CTTGAACTTT
* * *
3160803 GGTGCCACCAACTTATGTAGGCTTTGACTCG
1 GGTGCCACCAACTTGTGCAGGCTTTGACTAG
* *
3160834 GGTGCCGCAAACTTGTGCAGGCTTTGACTAG
1 GGTGCCACCAACTTGTGCAGGCTTTGACTAG
* *
3160865 GGTGTCACCACCTTGTG
1 GGTGCCACCAACTTGTG
3160882 TGAGCTTTGA
Statistics
Matches: 39, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
31 39 1.00
ACGTcount: A:0.18, C:0.25, G:0.29, T:0.28
Consensus pattern (31 bp):
GGTGCCACCAACTTGTGCAGGCTTTGACTAG
Found at i:3161003 original size:31 final size:31
Alignment explanation
Indices: 3160958--3161038 Score: 99
Period size: 31 Copynumber: 2.6 Consensus size: 31
3160948 CTTAGGAGCT
* * * *
3160958 ACCAACTCGCGTGGGTTTTGACTCGGGTGCC
1 ACCAACTTGTGTGGGCTTTGACTAGGGTGCC
*
3160989 GCCAACTTGTGTGGGCTTTGACTAGGGTGCC
1 ACCAACTTGTGTGGGCTTTGACTAGGGTGCC
* *
3161020 ACCAACTTATGTGAGCTTT
1 ACCAACTTGTGTGGGCTTT
3161039 AACATTCTAA
Statistics
Matches: 42, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
31 42 1.00
ACGTcount: A:0.16, C:0.25, G:0.30, T:0.30
Consensus pattern (31 bp):
ACCAACTTGTGTGGGCTTTGACTAGGGTGCC
Found at i:3161227 original size:447 final size:444
Alignment explanation
Indices: 3160357--3161479 Score: 1100
Period size: 447 Copynumber: 2.5 Consensus size: 444
3160347 CATTGACCAG
* * * * *
3160357 GGTGCCACCAACTCATCTA-GTTTTGACTTGAGTGCCGCCAACTTGTGCGAGCATTGACTAGGGT
1 GGTGCCACCAACTTATGTAGGCTTTGACTCGAGTGCCGCCAACTTGTGCG-GCTTTGACTAGGGT
* ** * * * * *
3160421 GCCTCCAACTCATTTGGGCTTTGACATTCTAAGGCTTATCCTCCATAGACAGGTGGC-GACTAAT
65 G-CACCAACTTGTGTGGGCTTTGACATTCTAAGGCTTAACCTCCTTAGATAGGTGCCAG-CTAAT
* * * * * * * * *
3160485 GTGGGCTTGACTCAAACTTACATGCCAACAACTTGTGTGGGCTTTGACTTAGGTGCCACAAACTT
128 GTTGGCTTGACTCAAACTTAGA-GCCACCAACTCGCGTGGGATTTGACTCAGGTGCCGCCAACTT
* * *
3160550 ATGCGGGCTTTGACTACGGTGCCACCAACTCATGTGGGCCTTAACATTCTAAGGCTTGATCTCCT
192 GTGCGGGCTTTGACTAGGGTGCCACCAACTCATGTGAGCCTTAACATTCTAAGGCTTGATCTCCT
* * * * * * ** * *
3160615 TAGATAGGTACTAACTAATTTGGACTTCACTCGAACGTTGGTGCCACCAACTCATCTAGGCTTTG
257 CAAACAGGTACCAACTAATTTGGACGTCACTCAAACGTAAGTGCCACCAACTCATCGAGGCTTTA
* *
3160680 ACTAGGGAGCCGCCAACTTGTACGAGCTTTGACTAGGGTGCCACCAACTCATGTGGGCCTTGACA
322 ACTAGGGAGCCGCCAACTTGTACGAGCCTTGACTAAGGTGCCACCAACTCATGTGGGCCTTGACA
** * * ** *
3160745 TTCTAAGGCTTAACCTCTTTAGACAGCTACCAACTAATGTGGACTTGACTTGAACTTT
387 TTCTAAGGCTTAACCTCTCAAGACAGCTACCAACTAATATGGACCTGACTCAAACTTA
* *
3160803 GGTGCCACCAACTTATGTAGGCTTTGACTCGGGTGCCGCAAACTTGTGCAGGCTTTGACTAGGGT
1 GGTGCCACCAACTTATGTAGGCTTTGACTCGAGTGCCGCCAACTTGTGC-GGCTTTGACTAGGGT
* * * * * *
3160868 GTCACCACCTTGTGTGAGCTTTGACATTCTAAGTCTTAACCTTCTTAGATAGGTTCCAGCTATTG
65 G-CACCAACTTGTGTGGGCTTTGACATTCTAAGGCTTAACCTCCTTAGATAGGTGCCAGCTAATG
* * * * *
3160933 TTGGCTTCAGTCAAACTTAGGAGCTACCAACTCGCGTGGGTTTTGACTCGGGTGCCGCCAACTTG
129 TTGGCTTGACTCAAACTTA-GAGCCACCAACTCGCGTGGGATTTGACTCAGGTGCCGCCAACTTG
* * *
3160998 TGTGGGCTTTGACTAGGGTGCCACCAACTTATGTGAGCTTTAACATTCTAAGGCTTGA-CATCCT
193 TGCGGGCTTTGACTAGGGTGCCACCAACTCATGTGAGCCTTAACATTCTAAGGCTTGATC-TCCT
* * * * * **
3161062 CAAACATGTGCCAGCTAATTTGGACGTGACTCAAATGTAAGTGCCACTGACTCATGCGA-GCTTT
257 CAAACAGGTACCAACTAATTTGGACGTCACTCAAACGTAAGTGCCACCAACTCAT-CGAGGCTTT
* * * * * * *
3161126 AACTCATGTA-CTGCCAACTTGTTCGAGCCTTGACTAAGGTGCCACCAGCTCTTGTGGGCTTTGA
321 AACT-AGGGAGCCGCCAACTTGTACGAGCCTTGACTAAGGTGCCACCAACTCATGTGGGCCTTGA
* * * *
3161190 GACTT-TAAGGCTTAACCGTCTCAAG-TAGGTGCCAACTAATATGGACCTGACTCAAACTTA
385 CA-TTCTAAGGCTTAACC-TCTCAAGACAGCTACCAACTAATATGGACCTGACTCAAACTTA
* * * * * * *
3161250 AGTGCCCCCAACTCGTATG--GGCTTCGACTCAAGTGCTGCCAACATGTGTG-GGCTTTCACTAA
1 GGTGCCACCAACT--TATGTAGGCTTTGACTCGAGTGCCGCCAAC-T-TGTGCGGCTTTGACTAG
* * * *
3161312 GATGCTACCAACTTGTGTGGGCTTTAACATTCTAAGGCTTGACCTCCTTAGACT-GGTGCCAACT
62 GGTGC-ACCAACTTGTGTGGGCTTTGACATTCTAAGGCTTAACCTCCTTAGA-TAGGTGCCAGCT
* * * * *
3161376 AAT-TTGGACTTGACTCGAACATTAGTGCCACCAACTCGCGTAGGATTTGACTCAGGTGCTGCCC
125 AATGTTGG-CTTGACTCAAAC-TTAGAGCCACCAACTCGCGTGGGATTTGACTCAGGTGCCGCCA
* * * *
3161440 ACTTGTGCGAGCTTTAACTAGGATGCTACCAACTCATGTG
188 ACTTGTGCGGGCTTTGACTAGGGTGCCACCAACTCATGTG
3161480 GGCGTTGATA
Statistics
Matches: 547, Mismatches: 113, Indels: 33
0.79 0.16 0.05
Matches are distributed among these distances:
446 23 0.04
447 496 0.91
448 20 0.04
449 8 0.01
ACGTcount: A:0.23, C:0.25, G:0.23, T:0.29
Consensus pattern (444 bp):
GGTGCCACCAACTTATGTAGGCTTTGACTCGAGTGCCGCCAACTTGTGCGGCTTTGACTAGGGTG
CACCAACTTGTGTGGGCTTTGACATTCTAAGGCTTAACCTCCTTAGATAGGTGCCAGCTAATGTT
GGCTTGACTCAAACTTAGAGCCACCAACTCGCGTGGGATTTGACTCAGGTGCCGCCAACTTGTGC
GGGCTTTGACTAGGGTGCCACCAACTCATGTGAGCCTTAACATTCTAAGGCTTGATCTCCTCAAA
CAGGTACCAACTAATTTGGACGTCACTCAAACGTAAGTGCCACCAACTCATCGAGGCTTTAACTA
GGGAGCCGCCAACTTGTACGAGCCTTGACTAAGGTGCCACCAACTCATGTGGGCCTTGACATTCT
AAGGCTTAACCTCTCAAGACAGCTACCAACTAATATGGACCTGACTCAAACTTA
Found at i:3161336 original size:31 final size:32
Alignment explanation
Indices: 3161257--3161336 Score: 94
Period size: 31 Copynumber: 2.6 Consensus size: 32
3161247 TTAAGTGCCC
* * *
3161257 CCAACTCGTATGGGC-TTCGACTCAAGTGCTG
1 CCAACTTGTGTGGGCTTTCGACTCAAGTGCTA
*
3161288 CCAACATGTGTGGGCTTTC-ACT-AAGATGCTA
1 CCAACTTGTGTGGGCTTTCGACTCAAG-TGCTA
3161319 CCAACTTGTGTGGGCTTT
1 CCAACTTGTGTGGGCTTT
3161337 AACATTCTAA
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
30 3 0.07
31 36 0.86
32 3 0.07
ACGTcount: A:0.20, C:0.25, G:0.25, T:0.30
Consensus pattern (32 bp):
CCAACTTGTGTGGGCTTTCGACTCAAGTGCTA
Found at i:3161583 original size:30 final size:31
Alignment explanation
Indices: 3161549--3161636 Score: 115
Period size: 30 Copynumber: 2.9 Consensus size: 31
3161539 TTGTACTTAG
3161549 GTGCCACCAACTCGTGTGGGCTTTGACT-CT
1 GTGCCACCAACTCGTGTGGGCTTTGACTACT
* * * * *
3161579 GTGCCGCCAACTTGTGCGGGGTTTGACTAGT
1 GTGCCACCAACTCGTGTGGGCTTTGACTACT
*
3161610 GTGCCACCAACTCGTCTGGGCTTTGAC
1 GTGCCACCAACTCGTGTGGGCTTTGAC
3161637 ATTTGAAGGC
Statistics
Matches: 47, Mismatches: 10, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
30 24 0.51
31 23 0.49
ACGTcount: A:0.14, C:0.28, G:0.30, T:0.28
Consensus pattern (31 bp):
GTGCCACCAACTCGTGTGGGCTTTGACTACT
Found at i:3161853 original size:31 final size:31
Alignment explanation
Indices: 3161771--3161853 Score: 87
Period size: 31 Copynumber: 2.7 Consensus size: 31
3161761 CTGTCGACTG
3161771 GTGCGGGCATTGACTAGGGTGCCACCAACTC
1 GTGCGGGCATTGACTAGGGTGCCACCAACTC
* * * * * *
3161802 ATGTGGG-TTGTGACTTGGGTGCCTCCAACTT
1 GTGCGGGCAT-TGACTAGGGTGCCACCAACTC
*
3161833 GTGCGGGCATTCACTAGGGTG
1 GTGCGGGCATTGACTAGGGTG
3161854 TCGTCAACTC
Statistics
Matches: 39, Mismatches: 11, Indels: 4
0.72 0.20 0.07
Matches are distributed among these distances:
30 1 0.03
31 37 0.95
32 1 0.03
ACGTcount: A:0.16, C:0.23, G:0.35, T:0.27
Consensus pattern (31 bp):
GTGCGGGCATTGACTAGGGTGCCACCAACTC
Found at i:3162255 original size:391 final size:389
Alignment explanation
Indices: 3161564--3162307 Score: 827
Period size: 391 Copynumber: 1.9 Consensus size: 389
3161554 ACCAACTCGT
** * * * * * * * *
3161564 GTGGGCTTTGACTCTGTGCCGCCAACTTGTGCGGGGTTTGACTAGTGTGCCACCAACTCGTCTGG
1 GTGGGCTTTGACTAGGTGCCACCAACCTATGAGGGCTTTAACTAGGGTGCCACAAACTCGTCTGG
* * * * *
3161629 GCTTTGACATTTGAAGGCTTAACCTCCTTAGACAGGAGCCAACTAATGCAATTTGACTCGATCTT
66 GCTTTGACATTTGAAGGCTTAACCTCCTTAGAAAGGAGCCAACTAATGCAACTTGACTCAAACGT
* * * *
3161694 AGGTGCCACCAACTCGTGCGGGCTTTGATTAAGGTGCTGCCAATTTGGGTATGCTTTGACTCAGG
131 AGGTGCCACCAACTCGTGCGGGCTCTAACTAAGGTGCTGCCAATTTGGGTATGCCTTGACTCAGG
* ** * *** * *
3161759 TGCTGTCGACTGGTGCGGGCATTGACTAGGGTGCCACCAACTCATGTGGGTTGTGACTTGGGTGC
196 TGCTGTCAACTGGTGCAAGCATTGACTAAGGTGCCACCAACTCATGTGCCATGTGACTCGGGAGC
* * * * ** * *
3161824 CTCCAACTTGTGCGGGCATTCACTAGGGTGTCGTCAACTCAT-TTAGGCTTTAACATTCT-AAGG
261 CGCCAACATGTGAGGGCATTCACTAGGGTGCCACCAACTCATGTGA-GCCTTAACATT-TGAAGG
* *
3161887 CT-TATCCTCCTGAGACAGGTGCCAACTAATGTGGGCTTGACTCAAACTTACATGCGAACAACTT
324 CTAGAT-CTCCAGAGACAGGTGCCAACTAATGTGGGCTTGACTCAAACTTACATGCGAACAACTT
3161951 GC
388 GC
*
3161953 GTGGGCTTTGACTGAGGTGCCACCAACCTATGAGGGCTTTAACTAGGGTGCCACAAACTCGTGTG
1 GTGGGCTTTGACT-AGGTGCCACCAACCTATGAGGGCTTTAACTAGGGTGCCACAAACTCGTCTG
* *
3162018 GGCTTTGACATTTGAAGGCTTAACCTCCTTAGATAAGG-GCCAACTGAGGTG-GACTTGACTCAA
65 GGCTTTGACATTTGAAGGCTTAACCTCCTTAGA-AAGGAGCCAACT-A-ATGCAACTTGACTCAA
** * * ** * *
3162081 ACGTAGGTGTTATCAACTCGTGTGGGCTCTAACTCGGGTGCTGCTAATTTGTGT-TGGCCTTGAC
127 ACGTAGGTGCCACCAACTCGTGCGGGCTCTAACTAAGGTGCTGCCAATTTGGGTAT-GCCTTGAC
* * * * * *
3162145 TTAGGTGCTGTCAACTTGTTCAAGCGTTGACTAAGGTGTCACCAACTCATGTAGCCAT-TGCCTC
191 TCAGGTGCTGTCAACTGGTGCAAGCATTGACTAAGGTGCCACCAACTCATGT-GCCATGTGACTC
* *
3162209 GGGAGCCGCCAACATGTGAGGGCTTTGACTAGGGTGCCACCAACTCATGTGAGCCTTAACATTTG
255 GGGAGCCGCCAACATGTGAGGGCATTCACTAGGGTGCCACCAACTCATGTGAGCCTTAACATTTG
* *
3162274 AAGGCTAGATCTCCAGATATAGGTGCCAACTAAT
320 AAGGCTAGATCTCCAGAGACAGGTGCCAACTAAT
3162308 TTGGACTTCA
Statistics
Matches: 287, Mismatches: 59, Indels: 16
0.79 0.16 0.04
Matches are distributed among these distances:
389 13 0.05
390 82 0.29
391 184 0.64
392 8 0.03
ACGTcount: A:0.22, C:0.23, G:0.27, T:0.28
Consensus pattern (389 bp):
GTGGGCTTTGACTAGGTGCCACCAACCTATGAGGGCTTTAACTAGGGTGCCACAAACTCGTCTGG
GCTTTGACATTTGAAGGCTTAACCTCCTTAGAAAGGAGCCAACTAATGCAACTTGACTCAAACGT
AGGTGCCACCAACTCGTGCGGGCTCTAACTAAGGTGCTGCCAATTTGGGTATGCCTTGACTCAGG
TGCTGTCAACTGGTGCAAGCATTGACTAAGGTGCCACCAACTCATGTGCCATGTGACTCGGGAGC
CGCCAACATGTGAGGGCATTCACTAGGGTGCCACCAACTCATGTGAGCCTTAACATTTGAAGGCT
AGATCTCCAGAGACAGGTGCCAACTAATGTGGGCTTGACTCAAACTTACATGCGAACAACTTGC
Found at i:3162387 original size:87 final size:87
Alignment explanation
Indices: 3162241--3162433 Score: 386
Period size: 87 Copynumber: 2.2 Consensus size: 87
3162231 CTTTGACTAG
3162241 GGTGCCACCAACTCATGTGAGCCTTAACATTTGAAGGCTAGATCTCCAGATATAGGTGCCAACTA
1 GGTGCCACCAACTCATGTGAGCCTTAACATTTGAAGGCTAGATCTCCAGATATAGGTGCCAACTA
3162306 ATTTGGACTTCACTCGAACGTT
66 ATTTGGACTTCACTCGAACGTT
3162328 GGTGCCACCAACTCATGTGAGCCTTAACATTTGAAGGCTAGATCTCCAGATATAGGTGCCAACTA
1 GGTGCCACCAACTCATGTGAGCCTTAACATTTGAAGGCTAGATCTCCAGATATAGGTGCCAACTA
3162393 ATTTGGACTTCACTCGAACGTT
66 ATTTGGACTTCACTCGAACGTT
3162415 GGTGCCACCAACTCATGTG
1 GGTGCCACCAACTCATGTG
3162434 GCTTTGACTC
Statistics
Matches: 106, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
87 106 1.00
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (87 bp):
GGTGCCACCAACTCATGTGAGCCTTAACATTTGAAGGCTAGATCTCCAGATATAGGTGCCAACTA
ATTTGGACTTCACTCGAACGTT
Found at i:3162630 original size:31 final size:31
Alignment explanation
Indices: 3162572--3162649 Score: 77
Period size: 31 Copynumber: 2.5 Consensus size: 31
3162562 AGGTGCCACC
* *
3162572 AACTCGTGTGGGCTTTGACTCAAGTGTCGCA
1 AACTCGTGAGGGCTTTAACTCAAGTGTCGCA
* * *
3162603 AACTTGTGAGGGCTTTAACT-AAGGTGTCACC
1 AACTCGTGAGGGCTTTAACTCAA-GTGTCGCA
* *
3162634 AACCCGTGTGGGCTTT
1 AACTCGTGAGGGCTTT
3162650 GACATTCTAA
Statistics
Matches: 38, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
30 2 0.05
31 36 0.95
ACGTcount: A:0.21, C:0.22, G:0.28, T:0.29
Consensus pattern (31 bp):
AACTCGTGAGGGCTTTAACTCAAGTGTCGCA
Found at i:3162642 original size:149 final size:149
Alignment explanation
Indices: 3162381--3163437 Score: 941
Period size: 149 Copynumber: 7.1 Consensus size: 149
3162371 CTCCAGATAT
* * * *
3162381 AGGTGCCAACTAATTTGGACTTCACTCGAACGTT-GGTGCCACCAACTCATGT-GGCTTTGACTC
1 AGGTGCCAACTAATGTGCACTTGACTCGAAC-TTAGGTGCCACCAACTCGTGTGGGCTTTGACTC
* * ** *
3162444 GGGTGCCGCCAATTTGTGCGACCTTTAACTAGGGTGCCACCAACTCGTGTGGGCTTTGACATTCT
65 GGGTGCCGCCAACTTGTGAGGGCTTTAACTAAGGTGCCACCAACTCGTGTGGGCTTTGACATTCT
*
3162509 AAGGCTTAACCTCTTTAGAC
130 AAGGCTTAACCTCCTTAGAC
* ** * * *
3162529 AGTTGCCAAAAAATATGCACTTGACTTGAACTTAGGTGCCACCAACTCGTGTGGGCTTTGACTCA
1 AGGTGCCAACTAATGTGCACTTGACTCGAACTTAGGTGCCACCAACTCGTGTGGGCTTTGACTCG
* * * * *
3162594 AGTGTCGCAAACTTGTGAGGGCTTTAACTAAGGTGTCACCAACCCGTGTGGGCTTTGACATTCTA
66 GGTGCCGCCAACTTGTGAGGGCTTTAACTAAGGTGCCACCAACTCGTGTGGGCTTTGACATTCTA
* *
3162659 AGTCTTAACCTCCTTAGAT
131 AGGCTTAACCTCCTTAGAC
* * * * *
3162678 AGGT-CCTAGCTAATGTGGACTTGAGTCGAACTTAGGTGCCGCCAACTCGTGTGGGTTTTGACTC
1 AGGTGCC-AACTAATGTGCACTTGACTCGAACTTAGGTGCCACCAACTCGTGTGGGCTTTGACTC
* * ** *
3162742 GGGTGCCACCAACTTGT-ATGGGTTTTATTTAAGGGGCCACCAACTCGTGTGGGCTTTGACATTC
65 GGGTGCCGCCAACTTGTGA-GGGCTTTAACTAAGGTGCCACCAACTCGTGTGGGCTTTGACATTC
*
3162806 TAAGGCTTAACCTCCTTAAAC
129 TAAGGCTTAACCTCCTTAGAC
* * * * * * **
3162827 AGCTGCCAACTAATGTGCACTTGACTAGAACTTAGGTGCCGCTAACTCGTATGGGCTTTAACTTT
1 AGGTGCCAACTAATGTGCACTTGACTCGAACTTAGGTGCCACCAACTCGTGTGGGCTTTGACTCG
* * * * *
3162892 GGTGCCGCCAACTTGTGCGGGCTTTGACT-AGCGTGCCACTAACTCGAGTGGCCTTTGACATTCT
66 GGTGCCGCCAACTTGTGAGGGCTTTAACTAAG-GTGCCACCAACTCGTGTGGGCTTTGACATTCT
* * *
3162956 AAGGCTTAACCTGCTTAAAT
130 AAGGCTTAACCTCCTTAGAC
* * * * * * *
3162976 AGGTCCCAACTAATGTGAACTTAAGTCGAACTTAGGTGCCA-CAAGCTCGTGCGAGTTTTGACTC
1 AGGTGCCAACTAATGTGCACTTGACTCGAACTTAGGTGCCACCAA-CTCGTGTGGGCTTTGACTC
* * * * ** *
3163040 GAGTGCCGCCAACTTGGGTA-GGCTATAA-TTAGCGTGCCACCAACTAATGTGGGCTTTGATATT
65 GGGTGCCGCCAACTTGTG-AGGGCTTTAACTAAG-GTGCCACCAACTCGTGTGGGCTTTGACATT
*
3163103 CTTAGGCTTAACCTCCTTAGAC
128 CTAAGGCTTAACCTCCTTAGAC
* * ** * * * *
3163125 AAGTGGCAACTAATGTGGGCTTGACTCAAACTTACGTGCCACCAACTCATGTGGGCTTTGACTCA
1 AGGTGCCAACTAATGTGCACTTGACTCGAACTTAGGTGCCACCAACTCGTGTGGGCTTTGACTCG
* * * * * * ** *
3163190 GATACTGCCAACATGT-ATGGGCTTTGACT-AGGCTGCCACCGACTCGTGTGGGCTTCAACATTG
66 GGTGCCGCCAACTTGTGA-GGGCTTTAACTAAGG-TGCCACCAACTCGTGTGGGCTTTGACATTC
* *
3163253 TAAGGCTTGACCTCCTTCGAC
129 TAAGGCTTAACCTCCTTAGAC
* * * * * * ** * * *
3163274 AAGG-GCCAACTAATTTGGAATAGAGTCAAACACAAGTGCCACCAACTCGTGTGGGCGTTGACTT
1 -AGGTGCCAACTAATGTGCACTTGACTCGAACTTAGGTGCCACCAACTCGTGTGGGCTTTGACTC
* * * * * * * * * *
3163338 AGGTGCTC-CCAACTTGCGCGAGCTTTGACTATGGTGGCGCCAACTCGTGTGGACCTTGACATTC
65 GGGTGC-CGCCAACTTGTGAGGGCTTTAACTAAGGTGCCACCAACTCGTGTGGGCTTTGACATTC
* * *
3163402 GAAGGTTTAACCTCTTTAGAC
129 TAAGGCTTAACCTCCTTAGAC
* *
3163423 ATGAGCCAACTAATG
1 AGGTGCCAACTAATG
3163438 CAGACTTGAC
Statistics
Matches: 722, Mismatches: 167, Indels: 39
0.78 0.18 0.04
Matches are distributed among these distances:
147 3 0.00
148 52 0.07
149 657 0.91
150 10 0.01
ACGTcount: A:0.23, C:0.24, G:0.24, T:0.28
Consensus pattern (149 bp):
AGGTGCCAACTAATGTGCACTTGACTCGAACTTAGGTGCCACCAACTCGTGTGGGCTTTGACTCG
GGTGCCGCCAACTTGTGAGGGCTTTAACTAAGGTGCCACCAACTCGTGTGGGCTTTGACATTCTA
AGGCTTAACCTCCTTAGAC
Found at i:3162754 original size:31 final size:32
Alignment explanation
Indices: 3162712--3162801 Score: 96
Period size: 31 Copynumber: 2.9 Consensus size: 32
3162702 GTCGAACTTA
* *
3162712 GGTGCCGCCAACTCGTGTGGGTTTTGACT-CG
1 GGTGCCACCAACTCGTGTGGGTTTTGACTAAG
* * *
3162743 GGTGCCACCAACTTGTATGGGTTTT-ATTTAAG
1 GGTGCCACCAACTCGTGTGGGTTTTGA-CTAAG
*
3162775 GG-GCCACCAACTCGTGTGGGCTTTGAC
1 GGTGCCACCAACTCGTGTGGGTTTTGAC
3162802 ATTCTAAGGC
Statistics
Matches: 47, Mismatches: 9, Indels: 6
0.76 0.15 0.10
Matches are distributed among these distances:
30 1 0.02
31 42 0.89
32 4 0.09
ACGTcount: A:0.16, C:0.23, G:0.31, T:0.30
Consensus pattern (32 bp):
GGTGCCACCAACTCGTGTGGGTTTTGACTAAG
Found at i:3162914 original size:31 final size:31
Alignment explanation
Indices: 3162855--3162916 Score: 79
Period size: 31 Copynumber: 2.0 Consensus size: 31
3162845 ACTTGACTAG
* *
3162855 AACTTAGGTGCCGCTAACTCGTATGGGCTTT
1 AACTTAGGTGCCGCCAACTCGTACGGGCTTT
* * *
3162886 AACTTTGGTGCCGCCAACTTGTGCGGGCTTT
1 AACTTAGGTGCCGCCAACTCGTACGGGCTTT
3162917 GACTAGCGTG
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.16, C:0.24, G:0.27, T:0.32
Consensus pattern (31 bp):
AACTTAGGTGCCGCCAACTCGTACGGGCTTT
Found at i:3163434 original size:447 final size:444
Alignment explanation
Indices: 3162416--3163437 Score: 1040
Period size: 447 Copynumber: 2.3 Consensus size: 444
3162406 TCGAACGTTG
* ** * * *
3162416 GTGCCACCAACTCATGT-GGCTTTGACTCGGGTGCCGCCAATTTGTGCGACCTTTAACTAGGGTG
1 GTGCCACCAACTCGTGTGGGCTTTGACTTAGGTGCCGCCAACTTGTGCGAGCTTTGACTA-GGTG
* ** *
3162480 CCACCAACTCGTGTGGGCTTTGACATTCTAAGGCTTAACCTCTTTAGACAGTTGCCAAAAAATAT
65 CCACCAACTCGTGT-GGCCTTGACATTCTAAGGCTTAACCTCTTTAGACAG-TGCCAACTAATGT
* * * * * * *
3162545 GCACTTGACTTGAACTTAGGTGCCACCAACTCGTGTGGGCTTTGACTCAAGTGTCGCAAACTTGT
128 GAACTTAACTCGAACTTAGGTGCCACCAACTCGTGCGAGCTTTGACTCAAGTGCCGCAAACTTGG
* * ** *
3162610 GAGGGCTTTAACTAAGGTGTCACCAACCCGTGTGGGCTTTGACATTCTAAGTCTTAACCTCCTTA
193 GAGGGCTATAACTAAGGTGCCACCAACCAATGTGGGCTTTGACATTCTAAGGCTTAACCTCCTTA
* * * * * * * * *
3162675 GATAGGTCCTAGCTAATGTGGACTTGAGTCGAACTTAGGTGCCGCCAACTCGTGTGGGTTTTGAC
258 GACAAGTCCTAACTAATGTGGACTTGACTCAAACTTACGTGCCACCAACTCATGTGGGCTTTGAC
* * * * * * **
3162740 TCGGGTGCCACCAACTTGTATGGGTTTTATTTAAGGGGCCACCAACTCGTGTGGGCTTTGACATT
323 TCAGATACCACCAACATGTATGGGTTTGATCTAAGGGGCCACCAACTCGTGTGGGCTTCAACATT
* * * ** *
3162805 CTAAGGCTTAACCTCCTTAAACAGCTGCCAACTAATGTGCACTTGACTAGAACTTAG
388 CTAAGGCTTAACCTCCTTAAACAGCGGCCAACTAATGTGCAATAGACTAGAACACAA
* * * * * *
3162862 GTGCCGCTAACTCGTATGGGCTTTAACTTTGGTGCCGCCAACTTGTGCGGGCTTTGACTAGCGTG
1 GTGCCACCAACTCGTGTGGGCTTTGACTTAGGTGCCGCCAACTTGTGCGAGCTTTGACTAG-GTG
* * * * *
3162927 CCACTAACTCGAGTGGCCTTTGACATTCTAAGGCTTAACCTGC-TTAAATAGGTCCCAACTAATG
65 CCACCAACTCGTGTGGCC-TTGACATTCTAAGGCTTAACCT-CTTTAGACA-GTGCCAACTAATG
* * * *
3162991 TGAACTTAAGTCGAACTTAGGTGCCA-CAAGCTCGTGCGAGTTTTGACTCGAGTGCCGCCAACTT
127 TGAACTTAACTCGAACTTAGGTGCCACCAA-CTCGTGCGAGCTTTGACTCAAGTGCCGCAAACTT
* * * *
3163055 GGGTA-GGCTATAA-TTAGCGTGCCACCAACTAATGTGGGCTTTGATATTCTTAGGCTTAACCTC
191 GGG-AGGGCTATAACTAAG-GTGCCACCAACCAATGTGGGCTTTGACATTCTAAGGCTTAACCTC
* *
3163118 CTTAGACAAGTGGC-AACTAATGTGGGCTTGACTCAAACTTACGTGCCACCAACTCATGTGGGCT
254 CTTAGACAAGT-CCTAACTAATGTGGACTTGACTCAAACTTACGTGCCACCAACTCATGTGGGCT
** * *
3163182 TTGACTCAGATACTGCCAACATGTATGGGCTTTGA-CT-AGGCTGCCACCGACTCGTGTGGGCTT
318 TTGACTCAGATACCACCAACATGTATGGG-TTTGATCTAAGG-GGCCACCAACTCGTGTGGGCTT
* * ** * * *
3163245 CAACATTGTAAGGCTTGACCTCCTTCGACAAG-GGCCAACTAATTTGGAATAGAGTCA-AACACA
381 CAACATTCTAAGGCTTAACCTCCTTAAAC-AGCGGCCAACTAATGTGCAATAGACT-AGAACACA
3163308 A
444 A
* *
3163309 GTGCCACCAACTCGTGTGGGCGTTGACTTAGGTGCTC-CCAACTTGCGCGAGCTTTGACTATGGT
1 GTGCCACCAACTCGTGTGGGCTTTGACTTAGGTGC-CGCCAACTTGTGCGAGCTTTGACTA-GGT
* * * * *
3163373 GGCGCCAACTCGTGTGGACCTTGACATTCGAAGGTTTAACCTCTTTAGACATGAGCCAACTAATG
64 GCCACCAACTCGTGTGG-CCTTGACATTCTAAGGCTTAACCTCTTTAGACA-GTGCCAACTAATG
3163438 CAGACTTGAC
Statistics
Matches: 464, Mismatches: 95, Indels: 33
0.78 0.16 0.06
Matches are distributed among these distances:
446 27 0.06
447 422 0.91
448 15 0.03
ACGTcount: A:0.23, C:0.24, G:0.24, T:0.28
Consensus pattern (444 bp):
GTGCCACCAACTCGTGTGGGCTTTGACTTAGGTGCCGCCAACTTGTGCGAGCTTTGACTAGGTGC
CACCAACTCGTGTGGCCTTGACATTCTAAGGCTTAACCTCTTTAGACAGTGCCAACTAATGTGAA
CTTAACTCGAACTTAGGTGCCACCAACTCGTGCGAGCTTTGACTCAAGTGCCGCAAACTTGGGAG
GGCTATAACTAAGGTGCCACCAACCAATGTGGGCTTTGACATTCTAAGGCTTAACCTCCTTAGAC
AAGTCCTAACTAATGTGGACTTGACTCAAACTTACGTGCCACCAACTCATGTGGGCTTTGACTCA
GATACCACCAACATGTATGGGTTTGATCTAAGGGGCCACCAACTCGTGTGGGCTTCAACATTCTA
AGGCTTAACCTCCTTAAACAGCGGCCAACTAATGTGCAATAGACTAGAACACAA
Found at i:3163546 original size:31 final size:30
Alignment explanation
Indices: 3163506--3163639 Score: 126
Period size: 31 Copynumber: 4.3 Consensus size: 30
3163496 TAATTTGTAT
*
3163506 GGGCTTTGACTCAGGTGCCATCGACTTGTGC
1 GGGCTTTGACT-AGGTGCCATCAACTTGTGC
* ** *
3163537 GGGCATTGACTAGGGTGCCA-CTAACTCATGT
1 GGGCTTTGACTA-GGTGCCATC-AACTTGTGC
*
3163568 GGGCTTTGACTTAGGTGCCGTCAACTTGTGC
1 GGGCTTTGAC-TAGGTGCCATCAACTTGTGC
* * * *
3163599 GGGCTTTGAATAGGGTGCCACCAACTCGTGT
1 GGGCTTTGACTA-GGTGCCATCAACTTGTGC
3163630 GGGCTTTGAC
1 GGGCTTTGAC
3163640 ATTCTAAGGC
Statistics
Matches: 82, Mismatches: 16, Indels: 10
0.76 0.15 0.09
Matches are distributed among these distances:
30 4 0.05
31 75 0.91
32 3 0.04
ACGTcount: A:0.16, C:0.23, G:0.32, T:0.28
Consensus pattern (30 bp):
GGGCTTTGACTAGGTGCCATCAACTTGTGC
Found at i:3163595 original size:62 final size:62
Alignment explanation
Indices: 3163505--3163639 Score: 207
Period size: 62 Copynumber: 2.2 Consensus size: 62
3163495 CTAATTTGTA
* * *
3163505 TGGGCTTTGACTCAGGTGCCATCGACTTGTGCGGGCATTGACTAGGGTGCCACTAACTCATG
1 TGGGCTTTGACTCAGGTGCCATCAACTTGTGCGGGCATTGAATAGGGTGCCACCAACTCATG
* * * *
3163567 TGGGCTTTGACTTAGGTGCCGTCAACTTGTGCGGGCTTTGAATAGGGTGCCACCAACTCGTG
1 TGGGCTTTGACTCAGGTGCCATCAACTTGTGCGGGCATTGAATAGGGTGCCACCAACTCATG
3163629 TGGGCTTTGAC
1 TGGGCTTTGAC
3163640 ATTCTAAGGC
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
62 66 1.00
ACGTcount: A:0.16, C:0.23, G:0.32, T:0.29
Consensus pattern (62 bp):
TGGGCTTTGACTCAGGTGCCATCAACTTGTGCGGGCATTGAATAGGGTGCCACCAACTCATG
Found at i:3163723 original size:87 final size:87
Alignment explanation
Indices: 3163613--3163810 Score: 360
Period size: 87 Copynumber: 2.3 Consensus size: 87
3163603 TTTGAATAGG
*
3163613 GTGCCACCAACTCGTGTGGGCTTTGACATTCTAAGGCTTAACCTCCTTAGATAGGTGCCAACAAA
1 GTGCCACCAACTCGTGTGGGCTTTGACATTCTAAGGCTTAACCTCCTTAGACAGGTGCCAACAAA
*
3163678 TGTGGACTTGACTCAAACTTAT
66 TGTGGACTTGACTCAAACATAT
*
3163700 GTGCCACCAACTCATGTGGGCTTTGACATTCTAAGGCTTAACCTCCTTAGACAGGTGCCAACAAA
1 GTGCCACCAACTCGTGTGGGCTTTGACATTCTAAGGCTTAACCTCCTTAGACAGGTGCCAACAAA
*
3163765 TGTGGACTTGAGTCAAACATAT
66 TGTGGACTTGACTCAAACATAT
3163787 GTGCCACCAACTCGTGTGGGCTTT
1 GTGCCACCAACTCGTGTGGGCTTT
3163811 AACTCGCGTA
Statistics
Matches: 106, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
87 106 1.00
ACGTcount: A:0.26, C:0.25, G:0.22, T:0.28
Consensus pattern (87 bp):
GTGCCACCAACTCGTGTGGGCTTTGACATTCTAAGGCTTAACCTCCTTAGACAGGTGCCAACAAA
TGTGGACTTGACTCAAACATAT
Found at i:3163871 original size:31 final size:31
Alignment explanation
Indices: 3163787--3163875 Score: 97
Period size: 31 Copynumber: 2.9 Consensus size: 31
3163777 TCAAACATAT
*
3163787 GTGCCACCAACTCGTGTGGGCTTTAACTCGC
1 GTGCCACCAACTCGTGTGGGCTTTAACTAGC
* ** ** * * *
3163818 GTACTGCCAACAAGTGTAGGCTTTGACTAGG
1 GTGCCACCAACTCGTGTGGGCTTTAACTAGC
3163849 GTGCCACCAACTCGTGTGGGCTTTAAC
1 GTGCCACCAACTCGTGTGGGCTTTAAC
3163876 ATTCTAAGGC
Statistics
Matches: 42, Mismatches: 16, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
31 42 1.00
ACGTcount: A:0.20, C:0.27, G:0.27, T:0.26
Consensus pattern (31 bp):
GTGCCACCAACTCGTGTGGGCTTTAACTAGC
Found at i:3164130 original size:627 final size:625
Alignment explanation
Indices: 3163073--3164270 Score: 1451
Period size: 627 Copynumber: 1.9 Consensus size: 625
3163063 TATAATTAGC
* * * *
3163073 GTGCCACCAACTAATGTGGGCTTTGATATTCTTAGGCTTAACCTCCTTAGACAAGTGGCAACTAA
1 GTGCCACCAACTAATGTGGGCTTTGACATTCTAAGGCTTAACCTCCTTAGACAAGTGCCAACAAA
* * *
3163138 TGTGGGCTTGACTCAAACTTACGTGCCACCAACTCATGTGGGCTTTGACTCAGATACTGCCAACA
66 TGTGGACTTGACTCAAACATACGTGCCACCAACTCATGTGGGCTTTAACTCAGATACTGCCAACA
* * * * *
3163203 TGTATGGGCTTTGACTAGGCTGCCACCGACTCGTGTGGGCTTCAACATTGTAAGGCTTGACCTCC
131 AGTATAGGCTTTGACTAGGCTGCCACCAACTCGTGTGGGCTTCAACATTCTAAGGCCTGACCTCC
* * * * * *
3163268 TTCGACAAGGGCCAACTAATTTGGAATAGAGTCAAACACAAGTGCCACCAACTCGTGTGGGCGTT
196 ATAGACAAGGGCCAACTAATTTGGAATAGACTCAAACACAAGTGCCACCAACTCCTATGAGCGTT
* * * * *
3163333 GACTTAGGTGCTCCCAACTTGCGCGAGCTTTGACTATGGTGGCGCCAACTCGTGTGGACCTTGAC
261 GACTTAGGTGCTCCCAACTTGCACGAGCTTTGACTAGGGTGCCACCAACTCATGTGGACCTTGAC
* * * *
3163398 ATTCGAAGGTTTAACCTCTTTAGACATGAGCCAACTAATGCAGACTTGACTGAAATGTACGTGAT
326 ATTCGAAGGCTTAACCTCCTTAGACAGGAGCCAACTAATGCAGACTCGACTGAAA-GTACGTGAT
* * * * * *
3163463 GCGAATTTGAGTGGGCTTCGACTCGGCTACCACTAATTTGTATGGGCTTTGACTC-AGGTGCCAT
390 ACCAATATGAG-GGGCTTCGACTCGGCTACCACCAATTTGTATGGGCTTTGACACTA-GTGCCAC
* * * * ** * **
3163527 CGACTTGTGCGGGCATTGACTAGGGTGCCACTAACTCATGTGGGCTTTGACTTAGGTGCCGTCAA
453 CGACTTGTGCAGGCACTGACTAGGGTGCCACCAACACATGTGGGCTTTGACCCAGGAGCCACCAA
* *
3163592 CTTGTGCGGGCTTTGAATAGGGTGCCACCAACTCGTGTGGGCTTTGACATTCTAAGGCTTAACCT
518 CTTATGCGGGCTTTGAATAGGGTGCCACCAACTCGTCTGGGCTTTGACATTCTAAGGCTTAACCT
3163657 CCTTAGATAGGTGCCAACAAATGTGGACTTGACTCAAACTTAT
583 CCTTAGATAGGTGCCAACAAATGTGGACTTGACTCAAACTTAT
* *
3163700 GTGCCACCAACTCATGTGGGCTTTGACATTCTAAGGCTTAACCTCCTTAGACAGGTGCCAACAAA
1 GTGCCACCAACTAATGTGGGCTTTGACATTCTAAGGCTTAACCTCCTTAGACAAGTGCCAACAAA
* * * *
3163765 TGTGGACTTGAGTCAAACATATGTGCCACCAACTCGTGTGGGCTTTAACTC-GCGTACTGCCAAC
66 TGTGGACTTGACTCAAACATACGTGCCACCAACTCATGTGGGCTTTAACTCAG-ATACTGCCAAC
* * *
3163829 AAGTGTAGGCTTTGACTAGGGTGCCACCAACTCGTGTGGGCTTTAACATTCTAAGGCCTGACCTC
130 AAGTATAGGCTTTGACTAGGCTGCCACCAACTCGTGTGGGCTTCAACATTCTAAGGCCTGACCTC
* * * * ** * *
3163894 CATAGAC-AGGTGCCATCTAATTTGGACTTGACTCGAACGTAGGTGCCACCAACTCCTATGAGCT
195 CATAGACAAGG-GCCAACTAATTTGGAATAGACTCAAACACAAGTGCCACCAACTCCTATGAGCG
* * * * *
3163958 TTGACTCT-TGTGC-CGCGAACTTGTACGAGCTTTGGCTAGGGTGCCACCAACTCATGTGGGA-T
259 TTGACT-TAGGTGCTC-CCAACTTGCACGAGCTTTGACTAGGGTGCCACCAACTCATGT-GGACC
* * * ** *
3164020 TTGACTTTCGAAGGCTTAGCCTCCTTAGATAGGTTCCAACTAATGCGGACTCGACTCGAACA-TA
321 TTGACATTCGAAGGCTTAACCTCCTTAGACAGGAGCCAACTAATGCAGACTCGACT-GAA-AGTA
* * * * *
3164084 GGTGCTACCAACTCATGA-GGGCTTTGACTCGAG-TGCCACCAATTTGTGTGGGCTTTGACACTA
384 CGTGATACCAA-T-ATGAGGGGCTTCGACTCG-GCTACCACCAATTTGTATGGGCTTTGACACTA
** * * *
3164147 GTGCTGCCGAGTTGTGTAGGCACTGACTAGGGTGCCACCAACACGTGTGGGCTTTGACCCAGGAG
446 GTGCCACCGACTTGTGCAGGCACTGACTAGGGTGCCACCAACACATGTGGGCTTTGACCCAGGAG
* * *
3164212 CCACCAACTTATGTGGGCTTTGACTAGTGTGCCACCAACTCGTCTGGGCTTTGACATTC
511 CCACCAACTTATGCGGGCTTTGAATAGGGTGCCACCAACTCGTCTGGGCTTTGACATTC
3164271 ACGAGCCAAC
Statistics
Matches: 475, Mismatches: 85, Indels: 22
0.82 0.15 0.04
Matches are distributed among these distances:
626 5 0.01
627 456 0.96
628 10 0.02
629 4 0.01
ACGTcount: A:0.23, C:0.25, G:0.25, T:0.27
Consensus pattern (625 bp):
GTGCCACCAACTAATGTGGGCTTTGACATTCTAAGGCTTAACCTCCTTAGACAAGTGCCAACAAA
TGTGGACTTGACTCAAACATACGTGCCACCAACTCATGTGGGCTTTAACTCAGATACTGCCAACA
AGTATAGGCTTTGACTAGGCTGCCACCAACTCGTGTGGGCTTCAACATTCTAAGGCCTGACCTCC
ATAGACAAGGGCCAACTAATTTGGAATAGACTCAAACACAAGTGCCACCAACTCCTATGAGCGTT
GACTTAGGTGCTCCCAACTTGCACGAGCTTTGACTAGGGTGCCACCAACTCATGTGGACCTTGAC
ATTCGAAGGCTTAACCTCCTTAGACAGGAGCCAACTAATGCAGACTCGACTGAAAGTACGTGATA
CCAATATGAGGGGCTTCGACTCGGCTACCACCAATTTGTATGGGCTTTGACACTAGTGCCACCGA
CTTGTGCAGGCACTGACTAGGGTGCCACCAACACATGTGGGCTTTGACCCAGGAGCCACCAACTT
ATGCGGGCTTTGAATAGGGTGCCACCAACTCGTCTGGGCTTTGACATTCTAAGGCTTAACCTCCT
TAGATAGGTGCCAACAAATGTGGACTTGACTCAAACTTAT
Found at i:3164137 original size:31 final size:31
Alignment explanation
Indices: 3164102--3164266 Score: 125
Period size: 31 Copynumber: 5.3 Consensus size: 31
3164092 CAACTCATGA
*
3164102 GGGCTTTGACTCGAGTGCCACCAATTTGTGT
1 GGGCTTTGACTCGAGTGCCACCAACTTGTGT
* * ** * *
3164133 GGGCTTTGACACTAGTGCTGCCGAGTTGTGT
1 GGGCTTTGACTCGAGTGCCACCAACTTGTGT
* ** * * **
3164164 AGGCACTGACTAGGGTGCCACCAACACGTGT
1 GGGCTTTGACTCGAGTGCCACCAACTTGTGT
* * *
3164195 GGGCTTTGAC-CCAGGAGCCACCAACTTATGT
1 GGGCTTTGACTCGA-GTGCCACCAACTTGTGT
* * * *
3164226 GGGCTTTGACTAGTGTGCCACCAACTCGTCT
1 GGGCTTTGACTCGAGTGCCACCAACTTGTGT
3164257 GGGCTTTGAC
1 GGGCTTTGAC
3164267 ATTCACGAGC
Statistics
Matches: 96, Mismatches: 36, Indels: 4
0.71 0.26 0.03
Matches are distributed among these distances:
31 96 1.00
ACGTcount: A:0.18, C:0.25, G:0.30, T:0.27
Consensus pattern (31 bp):
GGGCTTTGACTCGAGTGCCACCAACTTGTGT
Found at i:3164139 original size:149 final size:149
Alignment explanation
Indices: 3163700--3164142 Score: 496
Period size: 149 Copynumber: 3.0 Consensus size: 149
3163690 TCAAACTTAT
* *
3163700 GTGCCACCAACTCATGTGGGCTTTGACATTCTAAGGCTTAACCTCCTTAGACAGGTGCCAACAAA
1 GTGCCACCAACTCATGTGGGCTTTGACATTCTAAGGCTTAGCCTCCTTAGACAGGTGCCAACTAA
* * * * * * * * * *
3163765 TGTGGACTTGAGTCAAACATATGTGCCACCAACTCGTGTGGGCTTTAACTCGCGTACTGCCAACA
66 TGTGGACTTGACTCGAACATAGGTGCCACCAACTCATGAGGGCTTTGACTCGAGTGCCGCCAACT
* *
3163830 AGTGTAGGCTTTGACTAGG
131 TGTGTGGGCTTTGACTAGG
* * * * *
3163849 GTGCCACCAACTCGTGTGGGCTTTAACATTCTAAGGCCT-GACCTCCATAGACAGGTGCCATCTA
1 GTGCCACCAACTCATGTGGGCTTTGACATTCTAAGGCTTAG-CCTCCTTAGACAGGTGCCAACTA
* * ** *
3163913 ATTTGGACTTGACTCGAACGTAGGTGCCACCAACTCCTATGA--GCTTTGACTCTTGTGCCGCGA
65 ATGTGGACTTGACTCGAACATAGGTGCCACCAACT-C-ATGAGGGCTTTGACTCGAGTGCCGCCA
** * *
3163976 ACTTGTACGAGCTTTGGCTAGG
128 ACTTGTGTGGGCTTTGACTAGG
* * * * *
3163998 GTGCCACCAACTCATGTGGGATTTGACTTTCGAAGGCTTAGCCTCCTTAGATAGGTTCCAACTAA
1 GTGCCACCAACTCATGTGGGCTTTGACATTCTAAGGCTTAGCCTCCTTAGACAGGTGCCAACTAA
* * * * *
3164063 TGCGGACTCGACTCGAACATAGGTGCTACCAACTCATGAGGGCTTTGACTCGAGTGCCACCAATT
66 TGTGGACTTGACTCGAACATAGGTGCCACCAACTCATGAGGGCTTTGACTCGAGTGCCGCCAACT
3164128 TGTGTGGGCTTTGAC
131 TGTGTGGGCTTTGAC
3164143 ACTAGTGCTG
Statistics
Matches: 237, Mismatches: 51, Indels: 12
0.79 0.17 0.04
Matches are distributed among these distances:
147 4 0.02
148 1 0.00
149 228 0.96
150 2 0.01
151 2 0.01
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.27
Consensus pattern (149 bp):
GTGCCACCAACTCATGTGGGCTTTGACATTCTAAGGCTTAGCCTCCTTAGACAGGTGCCAACTAA
TGTGGACTTGACTCGAACATAGGTGCCACCAACTCATGAGGGCTTTGACTCGAGTGCCGCCAACT
TGTGTGGGCTTTGACTAGG
Found at i:3164346 original size:31 final size:31
Alignment explanation
Indices: 3164305--3164475 Score: 130
Period size: 31 Copynumber: 5.5 Consensus size: 31
3164295 CTCGAACGTG
*
3164305 GGTGCTACCAACTCGTGCGGGCTTTGACTAA
1 GGTGCCACCAACTCGTGCGGGCTTTGACTAA
* * ** *
3164336 GGTGCCACCAATTTAGT-TAGGCTTTGACTCA
1 GGTGCCACCAA-CTCGTGCGGGCTTTGACTAA
*** ** * *
3164367 GGTGCTGTCAACTTATGCGGGCATTGACTAG
1 GGTGCCACCAACTCGTGCGGGCTTTGACTAA
* * *
3164398 GGTGCCACCAACTCGTGTGGGTTTTGACTTA
1 GGTGCCACCAACTCGTGCGGGCTTTGACTAA
* * *
3164429 GGTGCCGCCAAC-CTGTGCGGGCATTGACTAG
1 GGTGCCACCAACTC-GTGCGGGCTTTGACTAA
*
3164460 GGTGCCGCCAACTCGT
1 GGTGCCACCAACTCGT
3164476 TTTTGCTTTG
Statistics
Matches: 103, Mismatches: 33, Indels: 8
0.72 0.23 0.06
Matches are distributed among these distances:
30 3 0.03
31 96 0.93
32 4 0.04
ACGTcount: A:0.18, C:0.25, G:0.30, T:0.27
Consensus pattern (31 bp):
GGTGCCACCAACTCGTGCGGGCTTTGACTAA
Found at i:3164397 original size:221 final size:221
Alignment explanation
Indices: 3164055--3164491 Score: 538
Period size: 221 Copynumber: 2.0 Consensus size: 221
3164045 TAGATAGGTT
* *
3164055 CCAACTAATGCGGACTCGACTCGAACATAGGTGCTACCAACTCATGAGGGCTTTGACTCGAGTGC
1 CCAACTAATACGGACTCGACTCGAACATAGGTGCTACCAACTCATGAGGGCTTTGACTAGAGTGC
* * * * *
3164120 CACCAATTTGTGTGGGCTTTGACACTAGTGCTGCCGAGTTGTGTAGGCACTGACTAGGGTGCCAC
66 CACCAATTTGTGTAGGCTTTGACACTAGTGCTGCCAACTTATGCAGGCACTGACTAGGGTGCCAC
* * * *
3164185 CAACACGTGTGGGCTTTGACCCAGGAGCCACCAACTTATGTGGGCTTTGACTAGTGTGCCACCAA
131 CAACACGTGTGGGCTTTGACCCAGGAGCCACCAACCTATGCGGGCATTGACTAGGGTGCCACCAA
3164250 CTCGTCTGGGCTTTGACATTCACGAG
196 CTCGTCTGGGCTTTGACATTCACGAG
* * * * * *
3164276 CCAACTAATACGGATTTGACTCGAACGTGGGTGCTACCAACTCGTGCGGGCTTTGACTA-AGGTG
1 CCAACTAATACGGACTCGACTCGAACATAGGTGCTACCAACTCATGAGGGCTTTGACTAGA-GTG
* * * *
3164340 CCACCAATTTAGT-TAGGCTTTGACTC-AGGTGCTGTCAACTTATGCGGGCATTGACTAGGGTGC
65 CCACCAATTT-GTGTAGGCTTTGACACTA-GTGCTGCCAACTTATGCAGGCACTGACTAGGGTGC
* * ** * * * *
3164403 CACCAACTCGTGTGGGTTTTGACTTAGGTGCCGCCAACCTGTGCGGGCATTGACTAGGGTGCCGC
128 CACCAACACGTGTGGGCTTTGACCCAGGAGCCACCAACCTATGCGGGCATTGACTAGGGTGCCAC
* **
3164468 CAACTCGTTTTTGCTTTGACATTC
193 CAACTCGTCTGGGCTTTGACATTC
3164492 TAAGGCTTAA
Statistics
Matches: 181, Mismatches: 32, Indels: 6
0.83 0.15 0.03
Matches are distributed among these distances:
220 2 0.01
221 177 0.98
222 2 0.01
ACGTcount: A:0.21, C:0.25, G:0.27, T:0.27
Consensus pattern (221 bp):
CCAACTAATACGGACTCGACTCGAACATAGGTGCTACCAACTCATGAGGGCTTTGACTAGAGTGC
CACCAATTTGTGTAGGCTTTGACACTAGTGCTGCCAACTTATGCAGGCACTGACTAGGGTGCCAC
CAACACGTGTGGGCTTTGACCCAGGAGCCACCAACCTATGCGGGCATTGACTAGGGTGCCACCAA
CTCGTCTGGGCTTTGACATTCACGAG
Found at i:3164472 original size:93 final size:93
Alignment explanation
Indices: 3164304--3164472 Score: 198
Period size: 93 Copynumber: 1.8 Consensus size: 93
3164294 ACTCGAACGT
* ** * *
3164304 GGGTGCTACCAACTCGTGCGGGCTTTGACTAAGGTGCCACCAATTTAGTTAGGCTTTGACTCAGG
1 GGGTGCCACCAACTCGTGCGGGCTTTGACTAAGGTGCCACCAACCTAGTCAGGCATTGACTCAGG
* *
3164369 TGCTGTCAACTTATGCGGGCATTGACTA
66 TGCCGCCAACTTATGCGGGCATTGACTA
* * * * *
3164397 GGGTGCCACCAACTCGTGTGGGTTTTGACTTAGGTGCCGCCAACCT-GTGCGGGCATTGACT-AG
1 GGGTGCCACCAACTCGTGCGGGCTTTGACTAAGGTGCCACCAACCTAGT-CAGGCATTGACTCA-
3164460 GGTGCCGCCAACT
64 GGTGCCGCCAACT
3164473 CGTTTTTGCT
Statistics
Matches: 62, Mismatches: 12, Indels: 4
0.79 0.15 0.05
Matches are distributed among these distances:
92 3 0.05
93 59 0.95
ACGTcount: A:0.18, C:0.25, G:0.30, T:0.27
Consensus pattern (93 bp):
GGGTGCCACCAACTCGTGCGGGCTTTGACTAAGGTGCCACCAACCTAGTCAGGCATTGACTCAGG
TGCCGCCAACTTATGCGGGCATTGACTA
Found at i:3164487 original size:62 final size:62
Alignment explanation
Indices: 3164320--3164475 Score: 188
Period size: 62 Copynumber: 2.5 Consensus size: 62
3164310 TACCAACTCG
* * * * * * * *
3164320 TGCGGGCTTTGACTAAGGTGCCACCAATTTAGT-TAGGCTTTGACTCAGGTGCTGTCAACTTA
1 TGCGGGCATTGACTAGGGTGCCACCAA-CTCGTGTGGGCTTTGACTCAGGTGCCGCCAACCTA
* * *
3164382 TGCGGGCATTGACTAGGGTGCCACCAACTCGTGTGGGTTTTGACTTAGGTGCCGCCAACCTG
1 TGCGGGCATTGACTAGGGTGCCACCAACTCGTGTGGGCTTTGACTCAGGTGCCGCCAACCTA
*
3164444 TGCGGGCATTGACTAGGGTGCCGCCAACTCGT
1 TGCGGGCATTGACTAGGGTGCCACCAACTCGT
3164476 TTTTGCTTTG
Statistics
Matches: 81, Mismatches: 12, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
61 3 0.04
62 78 0.96
ACGTcount: A:0.18, C:0.24, G:0.30, T:0.28
Consensus pattern (62 bp):
TGCGGGCATTGACTAGGGTGCCACCAACTCGTGTGGGCTTTGACTCAGGTGCCGCCAACCTA
Found at i:3164717 original size:118 final size:118
Alignment explanation
Indices: 3164438--3164661 Score: 342
Period size: 118 Copynumber: 1.9 Consensus size: 118
3164428 AGGTGCCGCC
* * * **
3164438 AACCTGTGCGGGCATTGACTAGGGTGCCGCCAACTCGTTTTTGCTTTGACATTCTAAGGCTTAAC
1 AACCTGTGCGGGCTTTGACTAGGGTGCCACCAACTCGTCTGGGCTTTGACATTCTAAGGCTTAAC
** *
3164503 CTCCTTAGATAGGTGCCAACTAATGTGGGCTTAACTCAAACTTACCTGGCAAA
66 CTCCTTAGATAGGTGCCAACTAATGCAGACTTAACTCAAACTTACCTGGCAAA
3164556 AACCTGTGCGGGCTTTGACTAGGGTGCCACCAACTCGTCTGGGCTTTGACATT-TAAAGGCTTAA
1 AACCTGTGCGGGCTTTGACTAGGGTGCCACCAACTCGTCTGGGCTTTGACATTCT-AAGGCTTAA
* *
3164620 CCTCCTTAGATATGTGCCAACTAATGCAGACTTGACTCAAAC
65 CCTCCTTAGATAGGTGCCAACTAATGCAGACTTAACTCAAAC
3164662 ATTGGTGTTA
Statistics
Matches: 95, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
117 1 0.01
118 94 0.99
ACGTcount: A:0.25, C:0.25, G:0.22, T:0.28
Consensus pattern (118 bp):
AACCTGTGCGGGCTTTGACTAGGGTGCCACCAACTCGTCTGGGCTTTGACATTCTAAGGCTTAAC
CTCCTTAGATAGGTGCCAACTAATGCAGACTTAACTCAAACTTACCTGGCAAA
Found at i:3164838 original size:31 final size:31
Alignment explanation
Indices: 3164671--3164839 Score: 101
Period size: 31 Copynumber: 5.5 Consensus size: 31
3164661 CATTGGTGTT
*
3164671 ACCAACTCGTGTGGGCTTTGACTCGGGTG-C
1 ACCAACTCGTGTGGGCTTTGACTAGGGTGCC
* * * *
3164701 AGCCAATTTGTGTGGGCCTTGGCTTA-GGTGCC
1 A-CCAACTCGTGTGGGCTTTGAC-TAGGGTGCC
** * * *** * * *
3164733 GTCGACTTGTGCAAGCATAGACTAAGGTGCC
1 ACCAACTCGTGTGGGCTTTGACTAGGGTGCC
* * * *
3164764 ACCAACTCATGTGGGCTTTGACTCGGGCGTC
1 ACCAACTCGTGTGGGCTTTGACTAGGGTGCC
*
3164795 ATCAA-TACGTGTGGGCTTTGACTAGGGTGCC
1 ACCAACT-CGTGTGGGCTTTGACTAGGGTGCC
*
3164826 ACCAACTTGTGTGG
1 ACCAACTCGTGTGG
3164840 TCCTCAACAA
Statistics
Matches: 97, Mismatches: 36, Indels: 11
0.67 0.25 0.08
Matches are distributed among these distances:
30 4 0.04
31 90 0.93
32 3 0.03
ACGTcount: A:0.18, C:0.24, G:0.31, T:0.27
Consensus pattern (31 bp):
ACCAACTCGTGTGGGCTTTGACTAGGGTGCC
Found at i:3164996 original size:31 final size:31
Alignment explanation
Indices: 3164907--3164996 Score: 74
Period size: 31 Copynumber: 2.9 Consensus size: 31
3164897 CTCGAATGTT
** *
3164907 GGTGCCACCAACTCATGTGGGCTTTGACTCG
1 GGTGCCACCAACTCATGTCAGCTTTGACTAG
* ** * * * *
3164938 AGTGCTGCCAACTTAT-ACAACCATTGACTAG
1 GGTGCCACCAACTCATGTC-AGCTTTGACTAG
3164969 GGTGCCACCAACTCATGTCAGCTTTGAC
1 GGTGCCACCAACTCATGTCAGCTTTGAC
3164997 ATTCTAAGGC
Statistics
Matches: 40, Mismatches: 17, Indels: 4
0.66 0.28 0.07
Matches are distributed among these distances:
31 39 0.98
32 1 0.03
ACGTcount: A:0.23, C:0.29, G:0.22, T:0.26
Consensus pattern (31 bp):
GGTGCCACCAACTCATGTCAGCTTTGACTAG
Found at i:3165113 original size:31 final size:31
Alignment explanation
Indices: 3165065--3165145 Score: 92
Period size: 31 Copynumber: 2.6 Consensus size: 31
3165055 AGGTGCCACC
* * * *
3165065 AACTCGTGTGTGTTTTGACTCGGGTGTCACA
1 AACTCGTGTGAGCTTTGACTAGGATGTCACA
* *
3165096 AACTTGTGTCG-GCTTTGACTAGGATGTCACT
1 AACTCGTGT-GAGCTTTGACTAGGATGTCACA
3165127 AACTCGTGTGAGCTTTGAC
1 AACTCGTGTGAGCTTTGAC
3165146 ATTCTAAGTC
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
30 1 0.02
31 40 0.95
32 1 0.02
ACGTcount: A:0.19, C:0.20, G:0.27, T:0.35
Consensus pattern (31 bp):
AACTCGTGTGAGCTTTGACTAGGATGTCACA
Found at i:3165438 original size:31 final size:31
Alignment explanation
Indices: 3165357--3165439 Score: 85
Period size: 31 Copynumber: 2.7 Consensus size: 31
3165347 AACTTACGTA
* * * *
3165357 CCACCAACTCGCGAGGGTTTTGACTCGGGTG
1 CCACCAACTCGTGTGGGCTTTGACTAGGGTG
* * * *
3165388 CCGCCAACTTGTCTAGGCTTTGACTAGGGTG
1 CCACCAACTCGTGTGGGCTTTGACTAGGGTG
*
3165419 CCACCAACTCATGTGGGCTTT
1 CCACCAACTCGTGTGGGCTTT
3165440 AACATTCTAA
Statistics
Matches: 39, Mismatches: 13, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
31 39 1.00
ACGTcount: A:0.17, C:0.29, G:0.28, T:0.27
Consensus pattern (31 bp):
CCACCAACTCGTGTGGGCTTTGACTAGGGTG
Found at i:3165843 original size:31 final size:31
Alignment explanation
Indices: 3165801--3165889 Score: 97
Period size: 31 Copynumber: 2.9 Consensus size: 31
3165791 TTGGACGTTG
* * *
3165801 GTGCCACCAACTCGTGTGGGCTTTGACTCAG
1 GTGCCACCAACTCATGTGGGCTTTGACTAAC
* * * * *
3165832 GTGCTATCAACTTATGCGAGCTTTGACTAAC
1 GTGCCACCAACTCATGTGGGCTTTGACTAAC
*
3165863 GTGCCACCAACTCATGTGGGATTTGAC
1 GTGCCACCAACTCATGTGGGCTTTGAC
3165890 ATTCTAGGGC
Statistics
Matches: 44, Mismatches: 14, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
31 44 1.00
ACGTcount: A:0.21, C:0.26, G:0.25, T:0.28
Consensus pattern (31 bp):
GTGCCACCAACTCATGTGGGCTTTGACTAAC
Found at i:3166289 original size:31 final size:31
Alignment explanation
Indices: 3166248--3166332 Score: 111
Period size: 31 Copynumber: 2.7 Consensus size: 31
3166238 TCGAACGTTG
*
3166248 GTGCCACCAACTCATGTGGGCTTTGACTCGA
1 GTGCCACCAACTCATGTGGGCTTTGACTAGA
* *
3166279 GTGCCGCCAACT--TGTAGGAGCTTTGACTAGG
1 GTGCCACCAACTCATGT-GG-GCTTTGACTAGA
3166310 GTGCCACCAACTCATGTGGGCTT
1 GTGCCACCAACTCATGTGGGCTT
3166333 CGACATTCTA
Statistics
Matches: 46, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
29 3 0.07
30 2 0.04
31 36 0.78
32 2 0.04
33 3 0.07
ACGTcount: A:0.19, C:0.27, G:0.28, T:0.26
Consensus pattern (31 bp):
GTGCCACCAACTCATGTGGGCTTTGACTAGA
Found at i:3166747 original size:31 final size:31
Alignment explanation
Indices: 3166698--3166770 Score: 94
Period size: 31 Copynumber: 2.4 Consensus size: 31
3166688 TTGAATGTAA
** **
3166698 GTGCCACCAA-TTCTGCGAGCTTTGACTCGG
1 GTGCCACCAACTTGAGCGAGCTTTGACTAAG
*
3166728 GTGCCGCCAACTTGAGCGAGCTTTGACTAAG
1 GTGCCACCAACTTGAGCGAGCTTTGACTAAG
3166759 GTGCCACCAACT
1 GTGCCACCAACT
3166771 CATGTGGGCT
Statistics
Matches: 36, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
30 9 0.25
31 27 0.75
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (31 bp):
GTGCCACCAACTTGAGCGAGCTTTGACTAAG
Found at i:3166887 original size:31 final size:31
Alignment explanation
Indices: 3166845--3166931 Score: 129
Period size: 31 Copynumber: 2.8 Consensus size: 31
3166835 CTCGAACGTA
* * * *
3166845 GGTGCCACCAACTCGTGTAGGCTTTGACTCG
1 GGTGCTACCAACTTGTGTGGGCTTTGACTAG
*
3166876 GGTGCTGCCAACTTGTGTGGGCTTTGACTAG
1 GGTGCTACCAACTTGTGTGGGCTTTGACTAG
3166907 GGTGCTACCAACTTGTGTGGGCTTT
1 GGTGCTACCAACTTGTGTGGGCTTT
3166932 AACATTCTAA
Statistics
Matches: 50, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 50 1.00
ACGTcount: A:0.14, C:0.23, G:0.32, T:0.31
Consensus pattern (31 bp):
GGTGCTACCAACTTGTGTGGGCTTTGACTAG
Found at i:3167035 original size:31 final size:31
Alignment explanation
Indices: 3166994--3167076 Score: 98
Period size: 31 Copynumber: 2.7 Consensus size: 31
3166984 CTCGAACGTT
*
3166994 GGTGCCACCAACTCATGTGGGCATTGACTCA
1 GGTGCCACCAACTCATGTGGGCATTGACTAA
* * *
3167025 GGTGCTACCAAGT--TGTGCGAGCTTTGACTAA
1 GGTGCCACCAACTCATGTG-G-GCATTGACTAA
3167056 GGTGCCACCAACTCATGTGGG
1 GGTGCCACCAACTCATGTGGG
3167077 ATTTGACATT
Statistics
Matches: 42, Mismatches: 6, Indels: 8
0.75 0.11 0.14
Matches are distributed among these distances:
29 4 0.10
30 1 0.02
31 32 0.76
32 1 0.02
33 4 0.10
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (31 bp):
GGTGCCACCAACTCATGTGGGCATTGACTAA
Found at i:3167105 original size:896 final size:892
Alignment explanation
Indices: 3164757--3175001 Score: 10430
Period size: 896 Copynumber: 11.4 Consensus size: 892
3164747 GCATAGACTA
* *
3164757 AGGTGCCACCAACTCATGTGGGCTTTGACTCG-G-GC-GTCATCAA-TACGTGTGGGCTTTGACT
1 AGGTGCCACCAACTCGTGTGGG-TTTGACTCGAGTGCTG-C--CAACT-TGTGTGGGCTTTGACT
** * * * * * * * *
3164818 AGGGTGCCACCAACTTGTGTGGTCCTCAACAATCTAAGGCTTCATCTCTTTAGATAGGTGCCAAC
61 AGGGTGCCACCAACTCATGTGGGCTTTAACATTCTAAGGCTTGACCTCCTTAAATAGGTGCCAAC
* * * * * *
3164883 AAATTTCGACTTCACTCGAATGTTGGTGCCACCAACTCATGTGGGCTTTGACTCGAGTGCTGCCA
126 TAATTTGGACTTGACTTGAATGTAGGTGCCACCAACTCATGTGGGCTTTGACTCGGGTGCTGCCA
* * * * * * **
3164948 ACTTATACAACCATTGACTAGGGTGCCACCAACTCATGTCAGCTTTGACATTCTAAGGCTTAACC
191 ACTTGTGCGAGCTTTGACTAAGGTGCCACCAACTCATGTGGGCTTTGACATTCTAAGGCTTAACC
* * * * * * *
3165013 TCTTTAGACAGCTACCAACTAATGTGGACTTGACTTGAACTTAGGTGCCACCAACTCGTGTGTGT
256 TCCTTAGATAGGTGCCAACTAATGTGGACTTGACTCGAACTTAGGTGCCACCAACTCGTGTGGGC
* * * * * * *
3165078 TTTGACTCGGGTG-T-CACAAACTTGTGTCGGCTTTGACTAGGATGTCACTAACTCGTGTGAGCT
321 TTTGACTCGAGTGCTGC-C-AACTTGTGTGGGCTTTGACTAGGGTGCCACCAACTCATGTGGGCT
* * * * * * * *
3165141 TTGACATTCTAAGTCTTAACCTCCTTAGATAGGTCCCAGCTAATGTGGACTTGAGTTGAAATTAG
384 TTAACATTCTAAGGCTTAACCTCCTTAGATAGGTGCCAACTAATTTGGACTTGACTCGAACTTAG
* * * * * * * * *
3165206 GTGCTACCAACTCGTGT-GGTTTTGACTCGAGCGCTGCCAACTTGTGTGGGCTTT-AATTAGGTG
449 GTGCCACCAACTCATGTGGGCTTTGACTCGGGTGCTGCCAACTTGTGCGAGCTTTGACTAAGGT-
* * * *
3165269 GCCACCAACCCATGTGGGCTTCGACATTCTAAGGCTTAAGCTCCTTAGAT-AGGTGGCAACTAAT
513 GCCACCAACTCATGTGGGCTTTGACATTCTAAGGCTTAACCTCCTTAGATAAGG-GCCAACTAAT
* * * * * * *
3165333 GTGGACTTGACTCAAAC-TTACGTACCACCAACTCGCGAGGGTTTTGACTCGGGTGCCGCCAACT
577 GTGGACTTGACTCGAACGTTAGGTGCCACCAACTCGTGTGGGCTTTGACTCGAGTGCCGCCAACT
* * ** * *
3165397 TGTCTAGGCTTTGACTAGGGTGCCACCAACTCATGTGGGCTTTAACATTCTAAGGCTTGGCATCC
642 TGTGTGGGCTTTGACTAGGGTGCCACCAACTCATGTGGGCTTTAACATTCTAAGGCTTAACCTCT
* * * * * *
3165462 TAAAACAGGTGCCAACTAATTTGGACTTGAC-ACGAA-TGTAAGTGCCACTAACTTGTGTGGGCT
707 TTAGACAGGTGCCAACTAATCTGGACTTGACTA-GAACT-TAGGTGCCACCAACTCGTGTGGGCT
* * * * * *
3165525 TTGACTAGGGT-CGCGCCAGCTTATGCAAGCTTTGACTAGGGTGCCACCAACTCATATGGGCTTT
770 TTGACTCGGGTGC-CGCCAACTTGTGC-GGCTTTGACTA-GGTGCCACCAACTCGTGTGGGCTTT
* * *
3165589 GACATTCTAAGGCTTAACGTCCTTAGATAAG-TGCTAACTAATGTGGACCTGACTCGAACTT
832 GACATTCTAAGGCTTAACCTCCTTAGAT-AGCTGCCAACTAATGTGGACTTGACTCGAACTT
* * * * * *
3165650 AGGTGCCACCAACTCATGTAGGATTTGACTCGAGAGTTGCCAACATGTGTGGGCTTTGACTGGGG
1 AGGTGCCACCAACTCGTGT-GGGTTTGACTCGAGTGCTGCCAACTTGTGTGGGCTTTGACTAGGG
* * * * *
3165715 TGCTACCAACTCGTGTGGGCATTAACATTCTAAAGCTTGACCTCCTTAGAACA-GTGCCAACTAA
65 TGCCACCAACTCATGTGGGCTTTAACATTCTAAGGCTTGACCTCCTTA-AATAGGTGCCAACTAA
* * * * * * * **
3165779 TTAGGGCTTGACTTGGACGTTGGTGCCACCAACTCGTGTGGGCTTTGACTCAGGTGCTATCAACT
129 TTTGGACTTGACTTGAATGTAGGTGCCACCAACTCATGTGGGCTTTGACTCGGGTGCTGCCAACT
* * * *
3165844 TATGCGAGCTTTGACTAACGTGCCACCAACTCATGTGGGATTTGACATTCTAGGGCTTAACCTCC
194 TGTGCGAGCTTTGACTAAGGTGCCACCAACTCATGTGGGCTTTGACATTCTAAGGCTTAACCTCC
* * * * *
3165909 TTAAACAGCG-GCCAACTAATGTGCACTTGACTTGAACTTAGGTGCCACCAACTCTTGTGGGCTT
259 TTAGATAG-GTGCCAACTAATGTGGACTTGACTCGAACTTAGGTGCCACCAACTCGTGTGGGCTT
* * * * * * * *
3165973 TGACTCGAGTGCCGCTAACTTGTGCGGGCTATAATTAGGGTGCCACCAACTCATCTGGGCTTTCA
323 TGACTCGAGTGCTGCCAACTTGTGTGGGCTTTGACTAGGGTGCCACCAACTCATGTGGGCTTTAA
* * * ** * *
3166038 TATTCTAAGGCTTAACCTCCTTTGATAGGTGGCAACTAATGCGGACTTGACTCAAACTTACGTGC
388 CATTCTAAGGCTTAACCTCCTTAGATAGGTGCCAACTAATTTGGACTTGACTCGAACTTAGGTGC
* * * * * * *
3166103 CACCAACTCCTGTGGGCTTTGACTCGGGTACTGCCAACATGTGTGGGTTTTGACTACGGTGCCAC
453 CACCAACTCATGTGGGCTTTGACTCGGGTGCTGCCAACTTGTGCGAGCTTTGACTAAGGTGCCAC
* * * * * * *
3166168 CAACTCGTGTGGGCCTTAACATTCTAAGGCTTGATCTCCTTAGATAAGGGCCAACAAATTTGGAC
518 CAACTCATGTGGGCTTTGACATTCTAAGGCTTAACCTCCTTAGATAAGGGCCAACTAATGTGGAC
* *
3166233 TTCACTCGAACGTT-GGTGCCACCAACTCATGTGGGCTTTGACTCGAGTGCCGCCAACTTGTAG-
583 TTGACTCGAACGTTAGGTGCCACCAACTCGTGTGGGCTTTGACTCGAGTGCCGCCAACTTGT-GT
* ** *
3166296 GAGCTTTGACTAGGGTGCCACCAACTCATGTGGGCTTCGACATTCTAAGCCTTAACCTCTTTAGA
647 GGGCTTTGACTAGGGTGCCACCAACTCATGTGGGCTTTAACATTCTAAGGCTTAACCTCTTTAGA
** * * *
3166361 CAGCAGCCAACTAATCTAGACTTTACTAGAACTTAGGTGCCACCAACTCGTGTGCGCTTTGACTC
712 CAGGTGCCAACTAATCTGGACTTGACTAGAACTTAGGTGCCACCAACTCGTGTGGGCTTTGACTC
* * * *
3166426 TGGTGCCGCAAACTTGTGCAGGCTTTGACTAGGATGTCACCAACTCGTGTGAGCTTTGACATTCT
777 GGGTGCCGCCAACTTGTGC-GGCTTTGACTAGG-TGCCACCAACTCGTGTGGGCTTTGACATTCT
** * * * *
3166491 AAGTTTTAACCTCCTTAGATAGCTCCCAGCTAATGTGGACTTGAGTCGAAATT
840 AAGGCTTAACCTCCTTAGATAGCTGCCAACTAATGTGGACTTGACTCGAACTT
*
3166544 AGGTGCTACCAACTCGTGTGGGTTCTGACTCGAGTGCTGTCTACAACTTGTGTGGGCTTTGACTA
1 AGGTGCCACCAACTCGTGTGGGTT-TGACTCGAGTGCTG-C--CAACTTGTGTGGGCTTTGACTA
* * *
3166609 GGGTGCCACCAACTCATGTGGGCTTTAACATTCTAAGGCTTGGCATCCTCAAATAGGTGCCAACT
62 GGGTGCCACCAACTCATGTGGGCTTTAACATTCTAAGGCTTGACCTCCTTAAATAGGTGCCAACT
* * * * *
3166674 AATTTGGACTTGACTTGAATGTAAGTGCCACCAATTC-TGCGAGCTTTGACTCGGGTGCCGCCAA
127 AATTTGGACTTGACTTGAATGTAGGTGCCACCAACTCATGTGGGCTTTGACTCGGGTGCTGCCAA
* * * **
3166738 CTTGAGCGAGCTTTGACTAAGGTGCCACCAACTCATGTGGGCTTTGACATTCGAAAGCTTAATGT
192 CTTGTGCGAGCTTTGACTAAGGTGCCACCAACTCATGTGGGCTTTGACATTCTAAGGCTTAACCT
* * * *
3166803 CCTTAGATAGGTGCCAACTATTGTGGACCTGACTCGAACGTAGGTGCCACCAACTCGTGTAGGCT
257 CCTTAGATAGGTGCCAACTAATGTGGACTTGACTCGAACTTAGGTGCCACCAACTCGTGTGGGCT
* * **
3166868 TTGACTCGGGTGCTGCCAACTTGTGTGGGCTTTGACTAGGGTGCTACCAACTTGTGTGGGCTTTA
322 TTGACTCGAGTGCTGCCAACTTGTGTGGGCTTTGACTAGGGTGCCACCAACTCATGTGGGCTTTA
* * * **
3166933 ACATTCTAAGGCTTGACCTTCTTAAACCGGTGCCAACTAATTTGGACTTGACTCGAACGTT-GGT
387 ACATTCTAAGGCTTAACCTCCTTAGATAGGTGCCAACTAATTTGGACTTGACTCGAAC-TTAGGT
* * * *
3166997 GCCACCAACTCATGTGGGCATTGACTCAGGTGCTACCAAGTTGTGCGAGCTTTGACTAAGGTGCC
451 GCCACCAACTCATGTGGGCTTTGACTCGGGTGCTGCCAACTTGTGCGAGCTTTGACTAAGGTGCC
* *
3167062 ACCAACTCATGTGGGATTTGACATTCTAGGGCTTAACCTCCTTA-A-ACAGCGGCCAACTAATGT
516 ACCAACTCATGTGGGCTTTGACATTCTAAGGCTTAACCTCCTTAGATA-AG-GGCCAACTAATGT
* * * *
3167125 GCACTTGACTTGAAC-TTAGGTGCCACCAACTCTTGTGGGCTTTGACTCGAGTGCCGCTAACTTG
579 GGACTTGACTCGAACGTTAGGTGCCACCAACTCGTGTGGGCTTTGACTCGAGTGCCGCCAACTTG
* * * * * * *
3167189 TGCGGGCTATAATTAGGGTGCCACCAACTCATCTGGGCTTTCATATTCTAAGGCTTAACCTCCTT
644 TGTGGGCTTTGACTAGGGTGCCACCAACTCATGTGGGCTTTAACATTCTAAGGCTTAACCT-CTT
* * * *
3167254 T-GATAGGTGGCAACTAATGC-GGACTTGACTCA-AACTTACGTGCCACCAACTCCTGTGGGCTT
708 TAGACAGGTGCCAACTAAT-CTGGACTTGACT-AGAACTTAGGTGCCACCAACTCGTGTGGGCTT
* * * * *
3167316 TGACTCGGGTACTGCCAACATGTGTG-GGTTTTGACTACGGTGCCACCAACTCGTGTGGGCCTTA
771 TGACTCGGGTGCCGCCAAC-T-TGTGCGGCTTTGACTA-GGTGCCACCAACTCGTGTGGGCTTTG
* * * * * *
3167380 ACATTCTAAGGCTTGATCTCCTTAGATAAG-GGCCAACAAATTTGGACTTCACTCGAACGTT
833 ACATTCTAAGGCTTAACCTCCTTAGAT-AGCTGCCAACTAATGTGGACTTGACTCGAAC-TT
* * *
3167441 -GGTGCCACCAACTCATGTGGGCTTTGACTCGAGTGCCGCCAACTTGTAG-GAGCTTTGACTAGG
1 AGGTGCCACCAACTCGTGTGGG-TTTGACTCGAGTGCTGCCAACTTGT-GTGGGCTTTGACTAGG
** * * * * * **
3167504 GTGCCACCAACTCATGTGGGCTTCGACATTCTAAGCCTTAACCTCTTTAGACAGCAGCCAACTAA
64 GTGCCACCAACTCATGTGGGCTTTAACATTCTAAGGCTTGACCTCCTTAAATAGGTGCCAACTAA
* * * * * * * * *
3167569 TCTAGACTTTACTAGAACT-TAGGTGCCACCAACTCGTGTGCGCTTTGACTCTGGTGCCGCAAAC
129 TTTGGACTTGACTTGAA-TGTAGGTGCCACCAACTCATGTGGGCTTTGACTCGGGTGCTGCCAAC
* * * **
3167633 TTGTGC-AGGCTTTGACT-AGGATGTCACCAACTCGTGTGAGCTTTGACATTCTAAGTTTTAACC
193 TTGTGCGA-GCTTTGACTAAGG-TGCCACCAACTCATGTGGGCTTTGACATTCTAAGGCTTAACC
* * * * * * *
3167696 TCCTTAGATAGCTCCCAGCTAATGTGGACTTGAGTCGAAATTAGGTGCTACCAACTCGTGTGGGT
256 TCCTTAGATAGGTGCCAACTAATGTGGACTTGACTCGAACTTAGGTGCCACCAACTCGTGTGGGC
3167761 TTTGACTCGAGTGCTGTCTACAACTTGTGTGGGCTTTGACTAGGGTGCCACCAACTCATGTGGGC
321 TTTGACTCGAGTGCTG-C--CAACTTGTGTGGGCTTTGACTAGGGTGCCACCAACTCATGTGGGC
** * * *
3167826 TTTAACATTCTAAGGCTTGGCATCCTTAAATAGGTGCCAACTAATTTGGACTTGACTTGAA-TGT
383 TTTAACATTCTAAGGCTTAACCTCCTTAGATAGGTGCCAACTAATTTGGACTTGACTCGAACT-T
* * * * *
3167890 AAGTGCCACCAATTC-TGCGGGCTTTGACTCGGGTGCCGCCAACTTGAGCGAGCTTTGACTAAGG
447 AGGTGCCACCAACTCATGTGGGCTTTGACTCGGGTGCTGCCAACTTGTGCGAGCTTTGACTAAGG
* * ** *
3167954 TGCCACCAACTCATGTGGGCTTTGACATTCGAAAGCTTAATGTCCTTAGAT-AGGTGCCAACTAT
512 TGCCACCAACTCATGTGGGCTTTGACATTCTAAGGCTTAACCTCCTTAGATAAGG-GCCAACTAA
* * * *
3168018 TGTGGACCTGACTCGAACG-TAGGTGCCACCAACTCGTGTAGGCTTTGACTCGCGTGCTGCCAAC
576 TGTGGACTTGACTCGAACGTTAGGTGCCACCAACTCGTGTGGGCTTTGACTCGAGTGCCGCCAAC
* ** * *
3168082 TTGTGTGGGCTTTGACTAGGGTGCTACCAACTTGTGTGGGCTTTAAGATTCTAAGGCTTGACCT-
641 TTGTGTGGGCTTTGACTAGGGTGCCACCAACTCATGTGGGCTTTAACATTCTAAGGCTTAACCTC
* * * * * *
3168146 TCTTAAACCGGTGCCACCTAATTTGGACTTGACTTGAACGTT-GGTGCCACCAACTCATGTGGGC
706 T-TTAGACAGGTGCCAACTAATCTGGACTTGACTAGAAC-TTAGGTGCCACCAACTCGTGTGGGC
* * ** * * *
3168210 ATTGACTCAGGTGCTACCAAGTTGTGCGAGCTTTGACTAAGGTGCCACCAACTCATGTGGGATTT
769 TTTGACTCGGGTGCCGCCAACTTGTGCG-GCTTTGACT-AGGTGCCACCAACTCGTGTGGGCTTT
* * * * * *
3168275 GACATTCTAGGGCTTAACCTCCTTAAACAGCGGCCAACTAATGTGCACTTGACTTGAACTT
832 GACATTCTAAGGCTTAACCTCCTTAGATAGCTGCCAACTAATGTGGACTTGACTCGAACTT
* * * * * * *
3168336 AGGTGCCACCAACTCTTGTGGGCTTTGACTCGAGTGCCGCTAACTTGTGCGGGCTATAATTAGGG
1 AGGTGCCACCAACTCGTGTGGG-TTTGACTCGAGTGCTGCCAACTTGTGTGGGCTTTGACTAGGG
* * * * ** *
3168401 TGCCACCAACTCATCTGGGCTTTCATATTCTAAGGCTTAACCTCCTTTGATAGGTGGCAACTAAT
65 TGCCACCAACTCATGTGGGCTTTAACATTCTAAGGCTTGACCTCCTTAAATAGGTGCCAACTAAT
** ** * * * *
3168466 GCGGACTTGACTCAAACT-TACGTGCCACCAACTCCTGTGGGCTTTGACTCGGGTACTGCCAACA
130 TTGGACTTGACTTGAA-TGTAGGTGCCACCAACTCATGTGGGCTTTGACTCGGGTGCTGCCAACT
* * * * * * * * *
3168530 TGTGTGGGTTTTGACTACGGTGCCACCAACTCGTGTGGGCCTTAACATTCTAAGGCTTGATCTCC
194 TGTGCGAGCTTTGACTAAGGTGCCACCAACTCATGTGGGCTTTGACATTCTAAGGCTTAACCTCC
* * * *
3168595 TTAGATAAGG-GCCAACAAATTTGGACTTCACTCGAACGTT-GGTGCCACCAACTCATGTGGGCT
259 TTAGAT-AGGTGCCAACTAATGTGGACTTGACTCGAAC-TTAGGTGCCACCAACTCGTGTGGGCT
* * *
3168658 TTGACTCGAGTGCCGCCAACTTGTAG-GAGCTTTGACTAGGGTGCCACCAACTCATGTGGGCTTC
322 TTGACTCGAGTGCTGCCAACTTGT-GTGGGCTTTGACTAGGGTGCCACCAACTCATGTGGGCTTT
* * * * ** * * * *
3168722 GACATTCTAAGCCTTAACCTCTTTAGACAGCAGCCAACTAATCTAGACTTTACTAGAACTTAGGT
386 AACATTCTAAGGCTTAACCTCCTTAGATAGGTGCCAACTAATTTGGACTTGACTCGAACTTAGGT
* * * * *
3168787 GCCACCAACTCGTGTGCGCTTTGACTCTGGTGCCGCAAACTTGTGC-AGGCTTTGACT-AGGATG
451 GCCACCAACTCATGTGGGCTTTGACTCGGGTGCTGCCAACTTGTGCGA-GCTTTGACTAAGG-TG
* * * ** ** *
3168850 TCACCAACTCGTGTGAGCTTTGACATTCTAAGTTTTAACCTCCTTAGAT-AGCTCCCAGCTAATG
514 CCACCAACTCATGTGGGCTTTGACATTCTAAGGCTTAACCTCCTTAGATAAG-GGCCAACTAATG
* * * * *
3168914 TGGACTTGAGTCGAA-ATTAGGTGCTACCAACTCGTGTGGGTTTTGACTCGAGTGCTGTCTACAA
578 TGGACTTGACTCGAACGTTAGGTGCCACCAACTCGTGTGGGCTTTGACTCGAGTGCCG-C--CAA
** *
3168978 CTTGTGTGGGCTTTGACTAGGGTGCCACCAACTCATGTGGGCTTTAACATTCTAAGGCTTGGCAT
640 CTTGTGTGGGCTTTGACTAGGGTGCCACCAACTCATGTGGGCTTTAACATTCTAAGGCTTAACCT
* * * * * * * * *
3169043 CCTCAAATAGGTGCCAACTAATTTGGACTTGACTTGAA-TGTAAGTGCCACCAATTC-TGCGGGC
705 CTTTAGACAGGTGCCAACTAATCTGGACTTGACTAGAACT-TAGGTGCCACCAACTCGTGTGGGC
* *
3169106 TTTGACTCGGGTGCCGCCAACTTGAGCGAGCTTTGACTAAGGTGCCACCAACTCATGTGGGCTTT
769 TTTGACTCGGGTGCCGCCAACTTGTGCG-GCTTTGACT-AGGTGCCACCAACTCGTGTGGGCTTT
* * ** * * * *
3169171 GACATTCGAAAGCTTAATGTCCTTAGATAGGTGCCAACTATTGTGGACCTGACTCGAACGT
832 GACATTCTAAGGCTTAACCTCCTTAGATAGCTGCCAACTAATGTGGACTTGACTCGAACTT
* *
3169232 AGGTGCCACCAACTCGTGTAGGCTTTGACTCGCGTGCTGCCAACTTGTGTGGGCTTTGACTAGGG
1 AGGTGCCACCAACTCGTGT-GGGTTTGACTCGAGTGCTGCCAACTTGTGTGGGCTTTGACTAGGG
* ** * * ** *
3169297 TGCTACCAACTTGTGTGGGCTTTAAGATTCTAAGGCTTGACCTTCTTAAACCGGTGCCACCTAAT
65 TGCCACCAACTCATGTGGGCTTTAACATTCTAAGGCTTGACCTCCTTAAATAGGTGCCAACTAAT
* * * * * *
3169362 TTGGACTTGACTTGAACGTTGGTGCCACCAACTCATGTGGGCATTGACTCAGGTGCTACCAAGTT
130 TTGGACTTGACTTGAATGTAGGTGCCACCAACTCATGTGGGCTTTGACTCGGGTGCTGCCAACTT
* *
3169427 GTGCGAGCTTTGACTAAGGTGCCACCAACTCATGTGGGATTTGACATTCTAGGGCTTAACCTCCT
195 GTGCGAGCTTTGACTAAGGTGCCACCAACTCATGTGGGCTTTGACATTCTAAGGCTTAACCTCCT
* * * * *
3169492 TAAACAGCG-GCCAACTAATGTGCACTTGACTTGAACTTAGGTGCCACCAACTCTTGTGGGCTTT
260 TAGATAG-GTGCCAACTAATGTGGACTTGACTCGAACTTAGGTGCCACCAACTCGTGTGGGCTTT
* * * * * * * * *
3169556 GACTCGAGTGCCGCTAACTTGTGCGGGCTATAATTAGGGTGCCACCAACTCATCTGGGCTTTCAT
324 GACTCGAGTGCTGCCAACTTGTGTGGGCTTTGACTAGGGTGCCACCAACTCATGTGGGCTTTAAC
* * ** * *
3169621 ATTCTAAGGCTTAACCTCCTTTGATAGGTGGCAACTAATGCGGACTTGACTCAAACTTACGTGCC
389 ATTCTAAGGCTTAACCTCCTTAGATAGGTGCCAACTAATTTGGACTTGACTCGAACTTAGGTGCC
* * * * * * *
3169686 ACCAACTCCTGTGGGCTTTGACTCGGGTACTGCCAACATGTGTGGGTTTTGACTACGGTGCCACC
454 ACCAACTCATGTGGGCTTTGACTCGGGTGCTGCCAACTTGTGCGAGCTTTGACTAAGGTGCCACC
* * * * * * *
3169751 AACTCGTGTGGGCCTTAACATTCTAAGGCTTGATCTCCTTAGATAAGGGCCAACAAATTTGGACT
519 AACTCATGTGGGCTTTGACATTCTAAGGCTTAACCTCCTTAGATAAGGGCCAACTAATGTGGACT
* * *
3169816 TCACTCGAACGTT-GGTGCCACCAACTCATGTGGGCTTTGACTCGAGTGCCGCCATCTTGTAG-G
584 TGACTCGAACGTTAGGTGCCACCAACTCGTGTGGGCTTTGACTCGAGTGCCGCCAACTTGT-GTG
* ** *
3169879 AGCTTTGACTAGGGTGCCACCAACTCATGTGGGCTTCGACATTCTAAGCCTTAACCTCTTTAGAC
648 GGCTTTGACTAGGGTGCCACCAACTCATGTGGGCTTTAACATTCTAAGGCTTAACCTCTTTAGAC
** * ** * *
3169944 AGCAGCCAACTAATCTAGACTTTTCTAGAACTTAGGTGCCACCAACTCGTGTGCGCTTTGACTCT
713 AGGTGCCAACTAATCTGGACTTGACTAGAACTTAGGTGCCACCAACTCGTGTGGGCTTTGACTCG
* * *
3170009 GGTGCCGCAAACTTGTGCAGGCTTTGACTAGGATGTCACCAACTCGTGTGAGCTTTGACATTCTA
778 GGTGCCGCCAACTTGTGC-GGCTTTGACTAGG-TGCCACCAACTCGTGTGGGCTTTGACATTCTA
** * * * *
3170074 AGTTTTAACCTCCTTAGATAGCTCCCAGCTAATGTGGACTTGAGTCGAAATT
841 AGGCTTAACCTCCTTAGATAGCTGCCAACTAATGTGGACTTGACTCGAACTT
*
3170126 AGGTGCTACCAACTCGTGTGGGTTTTGACTCGAGTGCTGTCTACAACTTGTGTGGGCTTTGACTA
1 AGGTGCCACCAACTCGTGTGGG-TTTGACTCGAGTGCTG-C--CAACTTGTGTGGGCTTTGACTA
* * *
3170191 GGGTGCCACCAACTCATGTGGGCTTTAACATTCTAAGGCTTGGCATCCTCAAATAGGTGCCAACT
62 GGGTGCCACCAACTCATGTGGGCTTTAACATTCTAAGGCTTGACCTCCTTAAATAGGTGCCAACT
* * * *
3170256 AATTTGGACTTGACTTGAATGTAAGTGCCACCAATTC-TGCGGGCTTTGACTCGGGTGCCGCCAA
127 AATTTGGACTTGACTTGAATGTAGGTGCCACCAACTCATGTGGGCTTTGACTCGGGTGCTGCCAA
* * * **
3170320 CTTGAGCGAGCTTTGACTAAGGTGCCACCAACTCATGTGGGCTTTGACATTCGAAAGCTTAATGT
192 CTTGTGCGAGCTTTGACTAAGGTGCCACCAACTCATGTGGGCTTTGACATTCTAAGGCTTAACCT
* * * *
3170385 CCTTAGATAGGTGCCAACTATTGTGGACCTGACTCGAACGTAGGTGCCACCAACTCGTGTAGGCT
257 CCTTAGATAGGTGCCAACTAATGTGGACTTGACTCGAACTTAGGTGCCACCAACTCGTGTGGGCT
* * **
3170450 TTGACTCGCGTGCTGCCAACTTGTGTGGGCTTTGACTAGGGTGCTACCAACTTGTGTGGGCTTTA
322 TTGACTCGAGTGCTGCCAACTTGTGTGGGCTTTGACTAGGGTGCCACCAACTCATGTGGGCTTTA
* * * * ** * *
3170515 AGATTCTAAGGCTTGACCTTCTTAAACCGGTGCCACCTAATTTGGACTTGACTTGAACGTT-GGT
387 ACATTCTAAGGCTTAACCTCCTTAGATAGGTGCCAACTAATTTGGACTTGACTCGAAC-TTAGGT
* * * *
3170579 GCCACCAACTCATGTGGGCATTGACTCAGGTGCTACCAAGTTGTGCGAGCTTTGACTAAGGTGCC
451 GCCACCAACTCATGTGGGCTTTGACTCGGGTGCTGCCAACTTGTGCGAGCTTTGACTAAGGTGCC
* *
3170644 ACCAACTCATGTGGGATTTGACATTCTAGGGCTTAACCTCCTTA-A-ACAGCGGCCAACTAATGT
516 ACCAACTCATGTGGGCTTTGACATTCTAAGGCTTAACCTCCTTAGATA-AG-GGCCAACTAATGT
* * * *
3170707 GCACTTGACTTGAAC-TTAGGTGCCACCAACTCTTGTGGGCTTTGACTCGAGTGCCGCTAACTTG
579 GGACTTGACTCGAACGTTAGGTGCCACCAACTCGTGTGGGCTTTGACTCGAGTGCCGCCAACTTG
* * * * * * *
3170771 TGCGGGCTATAATTAGGGTGCCACCAACTCATCTGGGCTTTCATATTCTAAGGCTTAACCTCCTT
644 TGTGGGCTTTGACTAGGGTGCCACCAACTCATGTGGGCTTTAACATTCTAAGGCTTAACCT-CTT
* * * *
3170836 T-GATAGGTGGCAACTAATGC-GGACTTGACTCA-AACTTACGTGCCACCAACTCCTGTGGGCTT
708 TAGACAGGTGCCAACTAAT-CTGGACTTGACT-AGAACTTAGGTGCCACCAACTCGTGTGGGCTT
* * * * *
3170898 TGACTCGGGTACTGCCAACATGTGTG-GGTTTTGACTACGGTGCCACCAACTCGTGTGGGCCTTA
771 TGACTCGGGTGCCGCCAAC-T-TGTGCGGCTTTGACTA-GGTGCCACCAACTCGTGTGGGCTTTG
* * * * * *
3170962 ACATTCTAAGGCTTGATCTCCTTAGATAAG-GGCCAACAAATTTGGACTTCACTCGAACGTT
833 ACATTCTAAGGCTTAACCTCCTTAGAT-AGCTGCCAACTAATGTGGACTTGACTCGAAC-TT
* * *
3171023 -GGTGCCACCAACTCATGTGGGCTTTGACTCGAGTGCCGCCAACTTGTAG-GAGCTTTGACTAGG
1 AGGTGCCACCAACTCGTGTGGG-TTTGACTCGAGTGCTGCCAACTTGT-GTGGGCTTTGACTAGG
** * * * * * **
3171086 GTGCCACCAACTCATGTGGGCTTCGACATTCTAAGCCTTAACCTCTTTAGACAGCAGCCAACTAA
64 GTGCCACCAACTCATGTGGGCTTTAACATTCTAAGGCTTGACCTCCTTAAATAGGTGCCAACTAA
* * * * * * * * *
3171151 TCTAGACTTTACTAGAACT-TAGGTGCCACCAACTCGTGTGCGCTTTGACTCTGGTGCCGCAAAC
129 TTTGGACTTGACTTGAA-TGTAGGTGCCACCAACTCATGTGGGCTTTGACTCGGGTGCTGCCAAC
* * * **
3171215 TTGTGC-AGGCTTTGACT-AGGATGTCACCAACTCGTGTGAGCTTTGACATTCTAAGTTTTAACC
193 TTGTGCGA-GCTTTGACTAAGG-TGCCACCAACTCATGTGGGCTTTGACATTCTAAGGCTTAACC
* * * * * * *
3171278 TCCTTAGATAGCTCCCAGCTAATGTGGACTTGAGTCGAAATTAGGTGCTACCAACTCGTGTGGGT
256 TCCTTAGATAGGTGCCAACTAATGTGGACTTGACTCGAACTTAGGTGCCACCAACTCGTGTGGGC
3171343 TTTGACTCGAGTGCTGTCTACAACTTGTGTGGGCTTTGACTAGGGTGCCACCAACTCATGTGGGC
321 TTTGACTCGAGTGCTG-C--CAACTTGTGTGGGCTTTGACTAGGGTGCCACCAACTCATGTGGGC
** * * * *
3171408 TTTAACATTCTAAGGCTTGGCATCCTCAAATAGGTGCCAACTAATTTGGACTTGACTTGAA-TGT
383 TTTAACATTCTAAGGCTTAACCTCCTTAGATAGGTGCCAACTAATTTGGACTTGACTCGAACT-T
* * * * *
3171472 AAGTGCCACCAATTC-TGCGGGCTTTGACTCGGGTGCCGCCAACTTGAGCGAGCTTTGACTAAGG
447 AGGTGCCACCAACTCATGTGGGCTTTGACTCGGGTGCTGCCAACTTGTGCGAGCTTTGACTAAGG
* * ** *
3171536 TGCCACCAACTCATGTGGGCTTTGACATTCGAAAGCTTAATGTCCTTAGAT-AGGTGCCAACTAT
512 TGCCACCAACTCATGTGGGCTTTGACATTCTAAGGCTTAACCTCCTTAGATAAGG-GCCAACTAA
* * * *
3171600 TGTGGACCTGACTCGAACG-TAGGTGCCACCAACTCGTGTAGGCTTTGACTCGCGTGCTGCCAAC
576 TGTGGACTTGACTCGAACGTTAGGTGCCACCAACTCGTGTGGGCTTTGACTCGAGTGCCGCCAAC
* ** * *
3171664 TTGTGTGGGCTTTGACTAGGGTGCTACCAACTTGTGTGGGCTTTAAGATTCTAAGGCTTGACCT-
641 TTGTGTGGGCTTTGACTAGGGTGCCACCAACTCATGTGGGCTTTAACATTCTAAGGCTTAACCTC
* * * * * *
3171728 TCTTAAACCGGTGCCACCTAATTTGGACTTGACTTGAACGTT-GGTGCCACCAACTCATGTGGGC
706 T-TTAGACAGGTGCCAACTAATCTGGACTTGACTAGAAC-TTAGGTGCCACCAACTCGTGTGGGC
* * ** * * *
3171792 ATTGACTCAGGTGCTACCAAGTTGTGCGAGCTTTGACTAAGGTGCCACCAACTCATGTGGGATTT
769 TTTGACTCGGGTGCCGCCAACTTGTGCG-GCTTTGACT-AGGTGCCACCAACTCGTGTGGGCTTT
* * * * * *
3171857 GACATTCTAGGGCTTAACCTCCTTAAACAGCGGCCAACTAATGTGCACTTGACTTGAACTT
832 GACATTCTAAGGCTTAACCTCCTTAGATAGCTGCCAACTAATGTGGACTTGACTCGAACTT
* * * * * * *
3171918 AGGTGCCACCAACTCTTGTGGGCTTTGACTCGAGTGCCGCTAACTTGTGCGGGCTATAATTAGGG
1 AGGTGCCACCAACTCGTGTGGG-TTTGACTCGAGTGCTGCCAACTTGTGTGGGCTTTGACTAGGG
* * * * ** *
3171983 TGCCACCAACTCATCTGGGCTTTCATATTCTAAGGCTTAACCTCCTTTGATAGGTGGCAACTAAT
65 TGCCACCAACTCATGTGGGCTTTAACATTCTAAGGCTTGACCTCCTTAAATAGGTGCCAACTAAT
** * * * * *
3172048 GCGGACTTGACTTAAACT-TACGTGCCACCAACTCCTGTGGGCTTTGACTCGGGTACTGCCAACA
130 TTGGACTTGACTTGAA-TGTAGGTGCCACCAACTCATGTGGGCTTTGACTCGGGTGCTGCCAACT
* * * * * * * * *
3172112 TGTGTGGGTTTTGACTACGGTGCCACCAACTCGTGTGGGCCTTAACATTCTAAGGCTTGATCTCC
194 TGTGCGAGCTTTGACTAAGGTGCCACCAACTCATGTGGGCTTTGACATTCTAAGGCTTAACCTCC
* * * *
3172177 TTAGATAAGG-GCCAACAAATTTGGACTTCACTCGAACGTT-GGTGCCACCAACTCATGTGGGCT
259 TTAGAT-AGGTGCCAACTAATGTGGACTTGACTCGAAC-TTAGGTGCCACCAACTCGTGTGGGCT
* * *
3172240 TTGACTCGAGTGCCGCCAACTTGTAG-GAGCTTTGACTAGGGTGCCACCAACTCATGTGGGCTTC
322 TTGACTCGAGTGCTGCCAACTTGT-GTGGGCTTTGACTAGGGTGCCACCAACTCATGTGGGCTTT
* * * * ** * * * *
3172304 GACATTCTAAGCCTTAACCTCTTTAGACAGCAGCCAACTAATCTAGACTTTACTAGAACTTAGGT
386 AACATTCTAAGGCTTAACCTCCTTAGATAGGTGCCAACTAATTTGGACTTGACTCGAACTTAGGT
* * * * *
3172369 GCCACCAACTCGTGTGCGCTTTGACTCTGGTGCCGCAAACTTGTGC-AGGCTTTGACT-AGGATG
451 GCCACCAACTCATGTGGGCTTTGACTCGGGTGCTGCCAACTTGTGCGA-GCTTTGACTAAGG-TG
* * * ** ** *
3172432 TCACCAACTCGTGTGAGCTTTGACATTCTAAGTTTTAACCTCCTTAGAT-AGCTCCCAGCTAATG
514 CCACCAACTCATGTGGGCTTTGACATTCTAAGGCTTAACCTCCTTAGATAAG-GGCCAACTAATG
* * * * *
3172496 TGGACTTGAGTCGAA-ATTAGGTGCTACCAACTCGTGTGGGTTTTGACTCGAGTGCTGTCTACAA
578 TGGACTTGACTCGAACGTTAGGTGCCACCAACTCGTGTGGGCTTTGACTCGAGTGCCG-C--CAA
* ** *
3172560 CTTGTGTGGGCTTGGACTAGGGTGCCACCAACTCATGTGGGCTTTAACATTCTAAGGCTTGGCAT
640 CTTGTGTGGGCTTTGACTAGGGTGCCACCAACTCATGTGGGCTTTAACATTCTAAGGCTTAACCT
* * * * * * * * *
3172625 CCTCAAATAGGTGCCAACTAATTTGGACTTGACTTGAA-TGTAAGTGCCACCAATTC-TGCGGGC
705 CTTTAGACAGGTGCCAACTAATCTGGACTTGACTAGAACT-TAGGTGCCACCAACTCGTGTGGGC
* *
3172688 TTTGACTCGGGTGCCGCCAACTTGAGCGAGCTTTGACTAAGGTGCCACCAACTCATGTGGGCTTT
769 TTTGACTCGGGTGCCGCCAACTTGTGCG-GCTTTGACT-AGGTGCCACCAACTCGTGTGGGCTTT
* * ** * * * * *
3172753 GACATTCGAAAGCTTAATGTCCTTAGATAGGTGCCAACTATTGTGGACCTAACTCGAACGT
832 GACATTCTAAGGCTTAACCTCCTTAGATAGCTGCCAACTAATGTGGACTTGACTCGAACTT
* *
3172814 AGGTGCCACCAACTCGTGTAGGCTTTGACTCGGGTGCTGCCAACTTGTGTGGGCTTTGACTAGGG
1 AGGTGCCACCAACTCGTGT-GGGTTTGACTCGAGTGCTGCCAACTTGTGTGGGCTTTGACTAGGG
* ** * ** ** *
3172879 TGCTACCAACTTGTGTGGGCTTTAAGATTCTAAGGCTTGACCTTTTTAAACCGGTGCCACCTAAT
65 TGCCACCAACTCATGTGGGCTTTAACATTCTAAGGCTTGACCTCCTTAAATAGGTGCCAACTAAT
* * * * * *
3172944 TTGGACTTGACTTGAACGTTGGTGCCACCAACTCATGTGGGCATTGACTCAGGTGCTACCAAGTT
130 TTGGACTTGACTTGAATGTAGGTGCCACCAACTCATGTGGGCTTTGACTCGGGTGCTGCCAACTT
* *
3173009 GTGCGAGCTTTGACTAAGGTGCCACCAACTCATGTGGGATTTGACATTCTAGGGCTTAACCTCCT
195 GTGCGAGCTTTGACTAAGGTGCCACCAACTCATGTGGGCTTTGACATTCTAAGGCTTAACCTCCT
* * * * *
3173074 TAAACAGCG-GCCAACTAATGTGCACTTGACTTGAACTTAGGTGCCACCAACTCTTGTGGGCTTT
260 TAGATAG-GTGCCAACTAATGTGGACTTGACTCGAACTTAGGTGCCACCAACTCGTGTGGGCTTT
* * * * * * * * *
3173138 GACTCGAGTGCCGCTAACTTGTGCGGGCTATAATTAGGGTGCCACCAACTCATCTGGGCTTTCAT
324 GACTCGAGTGCTGCCAACTTGTGTGGGCTTTGACTAGGGTGCCACCAACTCATGTGGGCTTTAAC
* * ** * *
3173203 ATTCTAAGGCTTAACCTCCTTTGATAGGTGGCAACTAATGCGGACTTGACTCAAACTTACGTGCC
389 ATTCTAAGGCTTAACCTCCTTAGATAGGTGCCAACTAATTTGGACTTGACTCGAACTTAGGTGCC
* * * * * * *
3173268 ACCAACTCCTGTGGGCTTTGACTCGGGTACTGCCAACATGTGTGGGTTTTGACTACGGTGCCACC
454 ACCAACTCATGTGGGCTTTGACTCGGGTGCTGCCAACTTGTGCGAGCTTTGACTAAGGTGCCACC
* * * * * * *
3173333 AACTCGTGTGGGCGTTAACATTCTAAGGCTTGATCTCCTTAGATAAGGGCCAACAAATTTGGACT
519 AACTCATGTGGGCTTTGACATTCTAAGGCTTAACCTCCTTAGATAAGGGCCAACTAATGTGGACT
* *
3173398 TCACTCGAACGTT-GGTGCCACCAACTCATGTGGGCTTTGACTCGAGTGCCGCCAACTTGTAG-G
584 TGACTCGAACGTTAGGTGCCACCAACTCGTGTGGGCTTTGACTCGAGTGCCGCCAACTTGT-GTG
* ** *
3173461 AGCTTTGACTAGGGTGCCACCAACTCATGTGGGCTTCGACATTCTAAGCCTTAACCTCTTTAGAC
648 GGCTTTGACTAGGGTGCCACCAACTCATGTGGGCTTTAACATTCTAAGGCTTAACCTCTTTAGAC
* ** * * * *
3173526 CGCAGCCAACTAATCTAGACTTTACTAGAACTTAGGTGCCACCAACTCGTGTGCGCTTTGACTCT
713 AGGTGCCAACTAATCTGGACTTGACTAGAACTTAGGTGCCACCAACTCGTGTGGGCTTTGACTCG
* * * *
3173591 GGTGCCGCAAACTTGTGCAGGCTTTGACTAGGATGTCGCCAACTCGTGTGAGCTTTGACATTCTA
778 GGTGCCGCCAACTTGTGC-GGCTTTGACTAGG-TGCCACCAACTCGTGTGGGCTTTGACATTCTA
** * * * *
3173656 AGTTTTAACCTCCTTAGATAGCTCCCAGCTAATGTGGACTTGAGTCGAAATT
841 AGGCTTAACCTCCTTAGATAGCTGCCAACTAATGTGGACTTGACTCGAACTT
*
3173708 AGGTGCTACCAACTCGTGTGGGTTTTGACTCGAGTGCTGTCTACAACTTGTGTGGGCTTTGACTA
1 AGGTGCCACCAACTCGTGTGGG-TTTGACTCGAGTGCTG-C--CAACTTGTGTGGGCTTTGACTA
* * *
3173773 GGGTGCCACCAACTCATGTGGGCTTTAACATTCTAAGGCTTGGCATCCTCAAATAGGTGCCAACT
62 GGGTGCCACCAACTCATGTGGGCTTTAACATTCTAAGGCTTGACCTCCTTAAATAGGTGCCAACT
* * * *
3173838 AATTTGGACTTGACTTGAATGTAAGTGCCACCAATTC-TGCGGGCTTTGACTCGGGTGCCGCCAA
127 AATTTGGACTTGACTTGAATGTAGGTGCCACCAACTCATGTGGGCTTTGACTCGGGTGCTGCCAA
* * * **
3173902 CTTGAGCGAGCTTTGACTAAGGTGCCACCAACTCATGTGGGCTTTGACATTCGAAAGCTTAATGT
192 CTTGTGCGAGCTTTGACTAAGGTGCCACCAACTCATGTGGGCTTTGACATTCTAAGGCTTAACCT
* * * *
3173967 CCTTAGATAGGTGCCAACTATTGTGGACCTGACTCGAACGTAGGTGCCACCAACTCGTGTAGGCT
257 CCTTAGATAGGTGCCAACTAATGTGGACTTGACTCGAACTTAGGTGCCACCAACTCGTGTGGGCT
* * **
3174032 TTGACTCGGGTGCTGCCAACTTGTGTGGGCTTTGACTAGGGTGCTACCAACTTGTGTGGGCTTTA
322 TTGACTCGAGTGCTGCCAACTTGTGTGGGCTTTGACTAGGGTGCCACCAACTCATGTGGGCTTTA
* * * **
3174097 ACATTCTAAGGCTTGACCTTCTTAAACCGGTGCCAACTAATTTGGACTTGACTCGAACGTT-GGT
387 ACATTCTAAGGCTTAACCTCCTTAGATAGGTGCCAACTAATTTGGACTTGACTCGAAC-TTAGGT
* * * *
3174161 GCCACCAACTCATGTGGGCATTGACTCAGGTGCTACCAAGTTGTGCGAGCTTTGACTAAGGTGCC
451 GCCACCAACTCATGTGGGCTTTGACTCGGGTGCTGCCAACTTGTGCGAGCTTTGACTAAGGTGCC
* * *
3174226 ACCAACTCATGTGGGATTTGACATTCTAGGGCTTAACCTCCTTA-A-ACAGCTGCCAACTAATGT
516 ACCAACTCATGTGGGCTTTGACATTCTAAGGCTTAACCTCCTTAGATA-AG-GGCCAACTAATGT
* ** * * * *
3174289 GCACTTGACTTAAAC-TTAGGTGCCACCAACTCTTGTGGGCTTTGACTCTAGTGCTGCTAACTTG
579 GGACTTGACTCGAACGTTAGGTGCCACCAACTCGTGTGGGCTTTGACTCGAGTGCCGCCAACTTG
* * * * * * * * *
3174353 TGCGAGCTATAATTAGGGTGCCACCAACTCATTTGGGCTTTGATATTCTAAGGCTTATCCTCCTT
644 TGTGGGCTTTGACTAGGGTGCCACCAACTCATGTGGGCTTTAACATTCTAAGGCTTAACCT-CTT
* * * *
3174418 T-GATAGGTGGCAACTAATGC-GGACTTGACTCA-AACTTACGTGCCACCAACTCCTGTGGGCTT
708 TAGACAGGTGCCAACTAAT-CTGGACTTGACT-AGAACTTAGGTGCCACCAACTCGTGTGGGCTT
* * * *
3174480 TGACTCGGGTACTGCAAACATGTGTG-GGCTTTGACTTAGGTGCCACCAACTCGTGTGGGCTTTA
771 TGACTCGGGTGCCGCCAAC-T-TGTGCGGCTTTGAC-TAGGTGCCACCAACTCGTGTGGGCTTTG
* ** * * * * * *
3174544 ACATTCTAGGGCTTGCCCTCCGTAGACAAG-TGCCAAGTAATTTGGACTTGACTCAAACGT
833 ACATTCTAAGGCTTAACCTCCTTAGA-TAGCTGCCAACTAATGTGGACTTGACTCGAACTT
* * * * *
3174604 AGGTGCCACCAACTCATGTGGGCTTTGACT-TAGGTG-TCACCAACTTGTGCGGGTTTTGACTAG
1 AGGTGCCACCAACTCGTGTGGG-TTTGACTCGA-GTGCT-GCCAACTTGTGTGGGCTTTGACTAG
* ** * * * * * * *
3174667 AGTGCCACCAACTTGTGTGGGCTTTGACGTTCGATGGGTTAACCTCCTTAAATAGGAGCCAACTA
63 GGTGCCACCAACTCATGTGGGCTTTAACATTCTAAGGCTTGACCTCCTTAAATAGGTGCCAACTA
** * ** * * * * * ** * *
3174732 ATGCGGGCTTGACTCAAACGTAGGTACTACCAACTCAAGTGGGCTTTGATTTAGGTGCCGCCAAT
128 ATTTGGACTTGACTTGAATGTAGGTGCCACCAACTCATGTGGGCTTTGACTCGGGTGCTGCCAAC
* * * * ** *
3174797 TTTTGTGGGCATTGACTCAAGTGTCGTTGACTTGTGCGAGCTTTGACTATGGTGCCACCAACGGC
193 TTGTGCGAGCTTTGACT-AAG-GT-G-CCAC-----C-AAC--T--C-AT-GTG--------GGC
* * * * *
3174862 TTTGACATTCTATGGCTTAACCTCCTTAGACAGTTGCCAGCTAATGTGGACTTGACTTGAACTTA
234 TTTGACATTCTAAGGCTTAACCTCCTTAGATAGGTGCCAACTAATGTGGACTTGACTCGAACTTA
* * * *
3174927 GGTGCCACCAATTCGTGTGGGATTTGACTCG-GTGCCGCCAACTTGTGCGGGCTTT-AGCTAGGG
299 GGTGCCACCAACTCGTGTGGGCTTTGACTCGAGTGCTGCCAACTTGTGTGGGCTTTGA-CTAGGG
*
3174990 TGTCACCAACTC
363 TGCCACCAACTC
3175002 GTGTTAGGAC
Statistics
Matches: 7707, Mismatches: 1431, Indels: 404
0.81 0.15 0.04
Matches are distributed among these distances:
893 1107 0.14
894 1258 0.16
895 92 0.01
896 4273 0.55
897 831 0.11
898 14 0.00
903 1 0.00
904 2 0.00
906 1 0.00
908 1 0.00
909 2 0.00
910 3 0.00
916 1 0.00
917 37 0.00
918 84 0.01
ACGTcount: A:0.22, C:0.24, G:0.24, T:0.29
Consensus pattern (892 bp):
AGGTGCCACCAACTCGTGTGGGTTTGACTCGAGTGCTGCCAACTTGTGTGGGCTTTGACTAGGGT
GCCACCAACTCATGTGGGCTTTAACATTCTAAGGCTTGACCTCCTTAAATAGGTGCCAACTAATT
TGGACTTGACTTGAATGTAGGTGCCACCAACTCATGTGGGCTTTGACTCGGGTGCTGCCAACTTG
TGCGAGCTTTGACTAAGGTGCCACCAACTCATGTGGGCTTTGACATTCTAAGGCTTAACCTCCTT
AGATAGGTGCCAACTAATGTGGACTTGACTCGAACTTAGGTGCCACCAACTCGTGTGGGCTTTGA
CTCGAGTGCTGCCAACTTGTGTGGGCTTTGACTAGGGTGCCACCAACTCATGTGGGCTTTAACAT
TCTAAGGCTTAACCTCCTTAGATAGGTGCCAACTAATTTGGACTTGACTCGAACTTAGGTGCCAC
CAACTCATGTGGGCTTTGACTCGGGTGCTGCCAACTTGTGCGAGCTTTGACTAAGGTGCCACCAA
CTCATGTGGGCTTTGACATTCTAAGGCTTAACCTCCTTAGATAAGGGCCAACTAATGTGGACTTG
ACTCGAACGTTAGGTGCCACCAACTCGTGTGGGCTTTGACTCGAGTGCCGCCAACTTGTGTGGGC
TTTGACTAGGGTGCCACCAACTCATGTGGGCTTTAACATTCTAAGGCTTAACCTCTTTAGACAGG
TGCCAACTAATCTGGACTTGACTAGAACTTAGGTGCCACCAACTCGTGTGGGCTTTGACTCGGGT
GCCGCCAACTTGTGCGGCTTTGACTAGGTGCCACCAACTCGTGTGGGCTTTGACATTCTAAGGCT
TAACCTCCTTAGATAGCTGCCAACTAATGTGGACTTGACTCGAACTT
Found at i:3167483 original size:31 final size:31
Alignment explanation
Indices: 3167442--3167526 Score: 111
Period size: 31 Copynumber: 2.7 Consensus size: 31
3167432 TCGAACGTTG
*
3167442 GTGCCACCAACTCATGTGGGCTTTGACTCGA
1 GTGCCACCAACTCATGTGGGCTTTGACTAGA
* *
3167473 GTGCCGCCAACT--TGTAGGAGCTTTGACTAGG
1 GTGCCACCAACTCATGT-GG-GCTTTGACTAGA
3167504 GTGCCACCAACTCATGTGGGCTT
1 GTGCCACCAACTCATGTGGGCTT
3167527 CGACATTCTA
Statistics
Matches: 46, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
29 3 0.07
30 2 0.04
31 36 0.78
32 2 0.04
33 3 0.07
ACGTcount: A:0.19, C:0.27, G:0.28, T:0.26
Consensus pattern (31 bp):
GTGCCACCAACTCATGTGGGCTTTGACTAGA
Found at i:3167976 original size:31 final size:30
Alignment explanation
Indices: 3167892--3167979 Score: 88
Period size: 31 Copynumber: 2.9 Consensus size: 30
3167882 TTGAATGTAA
* * **
3167892 GTGCCACCAATTCTGCGGGCTTTGACTCGG
1 GTGCCACCAACTCTGAGGGCTTTGACTAAG
*
3167922 GTGCCGCCAACT-TGAGCGAGCTTTGACTAAG
1 GTGCCACCAACTCTGAG-G-GCTTTGACTAAG
*
3167953 GTGCCACCAACTCATGTGGGCTTTGAC
1 GTGCCACCAACTC-TGAGGGCTTTGAC
3167980 ATTCGAAAGC
Statistics
Matches: 47, Mismatches: 7, Indels: 7
0.77 0.11 0.11
Matches are distributed among these distances:
29 3 0.06
30 11 0.23
31 29 0.62
32 1 0.02
33 3 0.06
ACGTcount: A:0.18, C:0.28, G:0.28, T:0.25
Consensus pattern (30 bp):
GTGCCACCAACTCTGAGGGCTTTGACTAAG
Found at i:3168082 original size:31 final size:31
Alignment explanation
Indices: 3168040--3168125 Score: 118
Period size: 31 Copynumber: 2.8 Consensus size: 31
3168030 TCGAACGTAG
* * * *
3168040 GTGCCACCAACTCGTGTAGGCTTTGACTCGC
1 GTGCTACCAACTTGTGTGGGCTTTGACTAGC
* *
3168071 GTGCTGCCAACTTGTGTGGGCTTTGACTAGG
1 GTGCTACCAACTTGTGTGGGCTTTGACTAGC
3168102 GTGCTACCAACTTGTGTGGGCTTT
1 GTGCTACCAACTTGTGTGGGCTTT
3168126 AAGATTCTAA
Statistics
Matches: 48, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 48 1.00
ACGTcount: A:0.14, C:0.24, G:0.30, T:0.31
Consensus pattern (31 bp):
GTGCTACCAACTTGTGTGGGCTTTGACTAGC
Found at i:3168229 original size:31 final size:31
Alignment explanation
Indices: 3168188--3168270 Score: 98
Period size: 31 Copynumber: 2.7 Consensus size: 31
3168178 CTTGAACGTT
*
3168188 GGTGCCACCAACTCATGTGGGCATTGACTCA
1 GGTGCCACCAACTCATGTGGGCATTGACTAA
* * *
3168219 GGTGCTACCAAGT--TGTGCGAGCTTTGACTAA
1 GGTGCCACCAACTCATGTG-G-GCATTGACTAA
3168250 GGTGCCACCAACTCATGTGGG
1 GGTGCCACCAACTCATGTGGG
3168271 ATTTGACATT
Statistics
Matches: 42, Mismatches: 6, Indels: 8
0.75 0.11 0.14
Matches are distributed among these distances:
29 4 0.10
30 1 0.02
31 32 0.76
32 1 0.02
33 4 0.10
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (31 bp):
GGTGCCACCAACTCATGTGGGCATTGACTAA
Found at i:3168677 original size:31 final size:31
Alignment explanation
Indices: 3168636--3168720 Score: 111
Period size: 31 Copynumber: 2.7 Consensus size: 31
3168626 TCGAACGTTG
*
3168636 GTGCCACCAACTCATGTGGGCTTTGACTCGA
1 GTGCCACCAACTCATGTGGGCTTTGACTAGA
* *
3168667 GTGCCGCCAACT--TGTAGGAGCTTTGACTAGG
1 GTGCCACCAACTCATGT-GG-GCTTTGACTAGA
3168698 GTGCCACCAACTCATGTGGGCTT
1 GTGCCACCAACTCATGTGGGCTT
3168721 CGACATTCTA
Statistics
Matches: 46, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
29 3 0.07
30 2 0.04
31 36 0.78
32 2 0.04
33 3 0.07
ACGTcount: A:0.19, C:0.27, G:0.28, T:0.26
Consensus pattern (31 bp):
GTGCCACCAACTCATGTGGGCTTTGACTAGA
Found at i:3169170 original size:31 final size:30
Alignment explanation
Indices: 3169086--3169173 Score: 88
Period size: 31 Copynumber: 2.9 Consensus size: 30
3169076 TTGAATGTAA
* * **
3169086 GTGCCACCAATTCTGCGGGCTTTGACTCGG
1 GTGCCACCAACTCTGAGGGCTTTGACTAAG
*
3169116 GTGCCGCCAACT-TGAGCGAGCTTTGACTAAG
1 GTGCCACCAACTCTGAG-G-GCTTTGACTAAG
*
3169147 GTGCCACCAACTCATGTGGGCTTTGAC
1 GTGCCACCAACTC-TGAGGGCTTTGAC
3169174 ATTCGAAAGC
Statistics
Matches: 47, Mismatches: 7, Indels: 7
0.77 0.11 0.11
Matches are distributed among these distances:
29 3 0.06
30 11 0.23
31 29 0.62
32 1 0.02
33 3 0.06
ACGTcount: A:0.18, C:0.28, G:0.28, T:0.25
Consensus pattern (30 bp):
GTGCCACCAACTCTGAGGGCTTTGACTAAG
Found at i:3169276 original size:31 final size:31
Alignment explanation
Indices: 3169234--3169319 Score: 118
Period size: 31 Copynumber: 2.8 Consensus size: 31
3169224 TCGAACGTAG
* * * *
3169234 GTGCCACCAACTCGTGTAGGCTTTGACTCGC
1 GTGCTACCAACTTGTGTGGGCTTTGACTAGC
* *
3169265 GTGCTGCCAACTTGTGTGGGCTTTGACTAGG
1 GTGCTACCAACTTGTGTGGGCTTTGACTAGC
3169296 GTGCTACCAACTTGTGTGGGCTTT
1 GTGCTACCAACTTGTGTGGGCTTT
3169320 AAGATTCTAA
Statistics
Matches: 48, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 48 1.00
ACGTcount: A:0.14, C:0.24, G:0.30, T:0.31
Consensus pattern (31 bp):
GTGCTACCAACTTGTGTGGGCTTTGACTAGC
Found at i:3169423 original size:31 final size:31
Alignment explanation
Indices: 3169382--3169464 Score: 98
Period size: 31 Copynumber: 2.7 Consensus size: 31
3169372 CTTGAACGTT
*
3169382 GGTGCCACCAACTCATGTGGGCATTGACTCA
1 GGTGCCACCAACTCATGTGGGCATTGACTAA
* * *
3169413 GGTGCTACCAAGT--TGTGCGAGCTTTGACTAA
1 GGTGCCACCAACTCATGTG-G-GCATTGACTAA
3169444 GGTGCCACCAACTCATGTGGG
1 GGTGCCACCAACTCATGTGGG
3169465 ATTTGACATT
Statistics
Matches: 42, Mismatches: 6, Indels: 8
0.75 0.11 0.14
Matches are distributed among these distances:
29 4 0.10
30 1 0.02
31 32 0.76
32 1 0.02
33 4 0.10
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (31 bp):
GGTGCCACCAACTCATGTGGGCATTGACTAA
Found at i:3170364 original size:31 final size:30
Alignment explanation
Indices: 3170280--3170367 Score: 88
Period size: 31 Copynumber: 2.9 Consensus size: 30
3170270 TTGAATGTAA
* * **
3170280 GTGCCACCAATTCTGCGGGCTTTGACTCGG
1 GTGCCACCAACTCTGAGGGCTTTGACTAAG
*
3170310 GTGCCGCCAACT-TGAGCGAGCTTTGACTAAG
1 GTGCCACCAACTCTGAG-G-GCTTTGACTAAG
*
3170341 GTGCCACCAACTCATGTGGGCTTTGAC
1 GTGCCACCAACTC-TGAGGGCTTTGAC
3170368 ATTCGAAAGC
Statistics
Matches: 47, Mismatches: 7, Indels: 7
0.77 0.11 0.11
Matches are distributed among these distances:
29 3 0.06
30 11 0.23
31 29 0.62
32 1 0.02
33 3 0.06
ACGTcount: A:0.18, C:0.28, G:0.28, T:0.25
Consensus pattern (30 bp):
GTGCCACCAACTCTGAGGGCTTTGACTAAG
Found at i:3170470 original size:31 final size:31
Alignment explanation
Indices: 3170428--3170513 Score: 118
Period size: 31 Copynumber: 2.8 Consensus size: 31
3170418 TCGAACGTAG
* * * *
3170428 GTGCCACCAACTCGTGTAGGCTTTGACTCGC
1 GTGCTACCAACTTGTGTGGGCTTTGACTAGC
* *
3170459 GTGCTGCCAACTTGTGTGGGCTTTGACTAGG
1 GTGCTACCAACTTGTGTGGGCTTTGACTAGC
3170490 GTGCTACCAACTTGTGTGGGCTTT
1 GTGCTACCAACTTGTGTGGGCTTT
3170514 AAGATTCTAA
Statistics
Matches: 48, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 48 1.00
ACGTcount: A:0.14, C:0.24, G:0.30, T:0.31
Consensus pattern (31 bp):
GTGCTACCAACTTGTGTGGGCTTTGACTAGC
Found at i:3170617 original size:31 final size:31
Alignment explanation
Indices: 3170576--3170658 Score: 98
Period size: 31 Copynumber: 2.7 Consensus size: 31
3170566 CTTGAACGTT
*
3170576 GGTGCCACCAACTCATGTGGGCATTGACTCA
1 GGTGCCACCAACTCATGTGGGCATTGACTAA
* * *
3170607 GGTGCTACCAAGT--TGTGCGAGCTTTGACTAA
1 GGTGCCACCAACTCATGTG-G-GCATTGACTAA
3170638 GGTGCCACCAACTCATGTGGG
1 GGTGCCACCAACTCATGTGGG
3170659 ATTTGACATT
Statistics
Matches: 42, Mismatches: 6, Indels: 8
0.75 0.11 0.14
Matches are distributed among these distances:
29 4 0.10
30 1 0.02
31 32 0.76
32 1 0.02
33 4 0.10
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (31 bp):
GGTGCCACCAACTCATGTGGGCATTGACTAA
Found at i:3171065 original size:31 final size:31
Alignment explanation
Indices: 3171024--3171108 Score: 111
Period size: 31 Copynumber: 2.7 Consensus size: 31
3171014 TCGAACGTTG
*
3171024 GTGCCACCAACTCATGTGGGCTTTGACTCGA
1 GTGCCACCAACTCATGTGGGCTTTGACTAGA
* *
3171055 GTGCCGCCAACT--TGTAGGAGCTTTGACTAGG
1 GTGCCACCAACTCATGT-GG-GCTTTGACTAGA
3171086 GTGCCACCAACTCATGTGGGCTT
1 GTGCCACCAACTCATGTGGGCTT
3171109 CGACATTCTA
Statistics
Matches: 46, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
29 3 0.07
30 2 0.04
31 36 0.78
32 2 0.04
33 3 0.07
ACGTcount: A:0.19, C:0.27, G:0.28, T:0.26
Consensus pattern (31 bp):
GTGCCACCAACTCATGTGGGCTTTGACTAGA
Found at i:3171558 original size:31 final size:30
Alignment explanation
Indices: 3171474--3171561 Score: 88
Period size: 31 Copynumber: 2.9 Consensus size: 30
3171464 TTGAATGTAA
* * **
3171474 GTGCCACCAATTCTGCGGGCTTTGACTCGG
1 GTGCCACCAACTCTGAGGGCTTTGACTAAG
*
3171504 GTGCCGCCAACT-TGAGCGAGCTTTGACTAAG
1 GTGCCACCAACTCTGAG-G-GCTTTGACTAAG
*
3171535 GTGCCACCAACTCATGTGGGCTTTGAC
1 GTGCCACCAACTC-TGAGGGCTTTGAC
3171562 ATTCGAAAGC
Statistics
Matches: 47, Mismatches: 7, Indels: 7
0.77 0.11 0.11
Matches are distributed among these distances:
29 3 0.06
30 11 0.23
31 29 0.62
32 1 0.02
33 3 0.06
ACGTcount: A:0.18, C:0.28, G:0.28, T:0.25
Consensus pattern (30 bp):
GTGCCACCAACTCTGAGGGCTTTGACTAAG
Found at i:3171664 original size:31 final size:31
Alignment explanation
Indices: 3171622--3171707 Score: 118
Period size: 31 Copynumber: 2.8 Consensus size: 31
3171612 TCGAACGTAG
* * * *
3171622 GTGCCACCAACTCGTGTAGGCTTTGACTCGC
1 GTGCTACCAACTTGTGTGGGCTTTGACTAGC
* *
3171653 GTGCTGCCAACTTGTGTGGGCTTTGACTAGG
1 GTGCTACCAACTTGTGTGGGCTTTGACTAGC
3171684 GTGCTACCAACTTGTGTGGGCTTT
1 GTGCTACCAACTTGTGTGGGCTTT
3171708 AAGATTCTAA
Statistics
Matches: 48, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 48 1.00
ACGTcount: A:0.14, C:0.24, G:0.30, T:0.31
Consensus pattern (31 bp):
GTGCTACCAACTTGTGTGGGCTTTGACTAGC
Found at i:3171811 original size:31 final size:31
Alignment explanation
Indices: 3171770--3171852 Score: 98
Period size: 31 Copynumber: 2.7 Consensus size: 31
3171760 CTTGAACGTT
*
3171770 GGTGCCACCAACTCATGTGGGCATTGACTCA
1 GGTGCCACCAACTCATGTGGGCATTGACTAA
* * *
3171801 GGTGCTACCAAGT--TGTGCGAGCTTTGACTAA
1 GGTGCCACCAACTCATGTG-G-GCATTGACTAA
3171832 GGTGCCACCAACTCATGTGGG
1 GGTGCCACCAACTCATGTGGG
3171853 ATTTGACATT
Statistics
Matches: 42, Mismatches: 6, Indels: 8
0.75 0.11 0.14
Matches are distributed among these distances:
29 4 0.10
30 1 0.02
31 32 0.76
32 1 0.02
33 4 0.10
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (31 bp):
GGTGCCACCAACTCATGTGGGCATTGACTAA
Found at i:3172259 original size:31 final size:31
Alignment explanation
Indices: 3172218--3172302 Score: 111
Period size: 31 Copynumber: 2.7 Consensus size: 31
3172208 TCGAACGTTG
*
3172218 GTGCCACCAACTCATGTGGGCTTTGACTCGA
1 GTGCCACCAACTCATGTGGGCTTTGACTAGA
* *
3172249 GTGCCGCCAACT--TGTAGGAGCTTTGACTAGG
1 GTGCCACCAACTCATGT-GG-GCTTTGACTAGA
3172280 GTGCCACCAACTCATGTGGGCTT
1 GTGCCACCAACTCATGTGGGCTT
3172303 CGACATTCTA
Statistics
Matches: 46, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
29 3 0.07
30 2 0.04
31 36 0.78
32 2 0.04
33 3 0.07
ACGTcount: A:0.19, C:0.27, G:0.28, T:0.26
Consensus pattern (31 bp):
GTGCCACCAACTCATGTGGGCTTTGACTAGA
Found at i:3172752 original size:31 final size:30
Alignment explanation
Indices: 3172668--3172755 Score: 88
Period size: 31 Copynumber: 2.9 Consensus size: 30
3172658 TTGAATGTAA
* * **
3172668 GTGCCACCAATTCTGCGGGCTTTGACTCGG
1 GTGCCACCAACTCTGAGGGCTTTGACTAAG
*
3172698 GTGCCGCCAACT-TGAGCGAGCTTTGACTAAG
1 GTGCCACCAACTCTGAG-G-GCTTTGACTAAG
*
3172729 GTGCCACCAACTCATGTGGGCTTTGAC
1 GTGCCACCAACTC-TGAGGGCTTTGAC
3172756 ATTCGAAAGC
Statistics
Matches: 47, Mismatches: 7, Indels: 7
0.77 0.11 0.11
Matches are distributed among these distances:
29 3 0.06
30 11 0.23
31 29 0.62
32 1 0.02
33 3 0.06
ACGTcount: A:0.18, C:0.28, G:0.28, T:0.25
Consensus pattern (30 bp):
GTGCCACCAACTCTGAGGGCTTTGACTAAG
Found at i:3172857 original size:31 final size:31
Alignment explanation
Indices: 3172815--3172901 Score: 129
Period size: 31 Copynumber: 2.8 Consensus size: 31
3172805 CTCGAACGTA
* * * *
3172815 GGTGCCACCAACTCGTGTAGGCTTTGACTCG
1 GGTGCTACCAACTTGTGTGGGCTTTGACTAG
*
3172846 GGTGCTGCCAACTTGTGTGGGCTTTGACTAG
1 GGTGCTACCAACTTGTGTGGGCTTTGACTAG
3172877 GGTGCTACCAACTTGTGTGGGCTTT
1 GGTGCTACCAACTTGTGTGGGCTTT
3172902 AAGATTCTAA
Statistics
Matches: 50, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 50 1.00
ACGTcount: A:0.14, C:0.23, G:0.32, T:0.31
Consensus pattern (31 bp):
GGTGCTACCAACTTGTGTGGGCTTTGACTAG
Found at i:3173005 original size:31 final size:31
Alignment explanation
Indices: 3172964--3173046 Score: 98
Period size: 31 Copynumber: 2.7 Consensus size: 31
3172954 CTTGAACGTT
*
3172964 GGTGCCACCAACTCATGTGGGCATTGACTCA
1 GGTGCCACCAACTCATGTGGGCATTGACTAA
* * *
3172995 GGTGCTACCAAGT--TGTGCGAGCTTTGACTAA
1 GGTGCCACCAACTCATGTG-G-GCATTGACTAA
3173026 GGTGCCACCAACTCATGTGGG
1 GGTGCCACCAACTCATGTGGG
3173047 ATTTGACATT
Statistics
Matches: 42, Mismatches: 6, Indels: 8
0.75 0.11 0.14
Matches are distributed among these distances:
29 4 0.10
30 1 0.02
31 32 0.76
32 1 0.02
33 4 0.10
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (31 bp):
GGTGCCACCAACTCATGTGGGCATTGACTAA
Found at i:3173453 original size:31 final size:31
Alignment explanation
Indices: 3173412--3173496 Score: 111
Period size: 31 Copynumber: 2.7 Consensus size: 31
3173402 TCGAACGTTG
*
3173412 GTGCCACCAACTCATGTGGGCTTTGACTCGA
1 GTGCCACCAACTCATGTGGGCTTTGACTAGA
* *
3173443 GTGCCGCCAACT--TGTAGGAGCTTTGACTAGG
1 GTGCCACCAACTCATGT-GG-GCTTTGACTAGA
3173474 GTGCCACCAACTCATGTGGGCTT
1 GTGCCACCAACTCATGTGGGCTT
3173497 CGACATTCTA
Statistics
Matches: 46, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
29 3 0.07
30 2 0.04
31 36 0.78
32 2 0.04
33 3 0.07
ACGTcount: A:0.19, C:0.27, G:0.28, T:0.26
Consensus pattern (31 bp):
GTGCCACCAACTCATGTGGGCTTTGACTAGA
Found at i:3173646 original size:31 final size:31
Alignment explanation
Indices: 3173559--3173649 Score: 89
Period size: 31 Copynumber: 2.9 Consensus size: 31
3173549 ACTAGAACTT
* *
3173559 AGGTGCCACCAACTCGTGTGCGCTTTGACTC
1 AGGTGCCGCCAACTCGTGTGAGCTTTGACTC
* *
3173590 TGGTGCCGCAAACT--TGTGCAGGCTTTGACT-
1 AGGTGCCGCCAACTCGTGTG-A-GCTTTGACTC
*
3173620 AGGATGTCGCCAACTCGTGTGAGCTTTGAC
1 AGG-TGCCGCCAACTCGTGTGAGCTTTGAC
3173650 ATTCTAAGTT
Statistics
Matches: 48, Mismatches: 7, Indels: 10
0.74 0.11 0.15
Matches are distributed among these distances:
29 4 0.08
30 2 0.04
31 37 0.77
32 1 0.02
33 4 0.08
ACGTcount: A:0.18, C:0.26, G:0.29, T:0.27
Consensus pattern (31 bp):
AGGTGCCGCCAACTCGTGTGAGCTTTGACTC
Found at i:3173946 original size:31 final size:30
Alignment explanation
Indices: 3173862--3173949 Score: 88
Period size: 31 Copynumber: 2.9 Consensus size: 30
3173852 TTGAATGTAA
* * **
3173862 GTGCCACCAATTCTGCGGGCTTTGACTCGG
1 GTGCCACCAACTCTGAGGGCTTTGACTAAG
*
3173892 GTGCCGCCAACT-TGAGCGAGCTTTGACTAAG
1 GTGCCACCAACTCTGAG-G-GCTTTGACTAAG
*
3173923 GTGCCACCAACTCATGTGGGCTTTGAC
1 GTGCCACCAACTC-TGAGGGCTTTGAC
3173950 ATTCGAAAGC
Statistics
Matches: 47, Mismatches: 7, Indels: 7
0.77 0.11 0.11
Matches are distributed among these distances:
29 3 0.06
30 11 0.23
31 29 0.62
32 1 0.02
33 3 0.06
ACGTcount: A:0.18, C:0.28, G:0.28, T:0.25
Consensus pattern (30 bp):
GTGCCACCAACTCTGAGGGCTTTGACTAAG
Found at i:3174051 original size:31 final size:31
Alignment explanation
Indices: 3174009--3174095 Score: 129
Period size: 31 Copynumber: 2.8 Consensus size: 31
3173999 CTCGAACGTA
* * * *
3174009 GGTGCCACCAACTCGTGTAGGCTTTGACTCG
1 GGTGCTACCAACTTGTGTGGGCTTTGACTAG
*
3174040 GGTGCTGCCAACTTGTGTGGGCTTTGACTAG
1 GGTGCTACCAACTTGTGTGGGCTTTGACTAG
3174071 GGTGCTACCAACTTGTGTGGGCTTT
1 GGTGCTACCAACTTGTGTGGGCTTT
3174096 AACATTCTAA
Statistics
Matches: 50, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 50 1.00
ACGTcount: A:0.14, C:0.23, G:0.32, T:0.31
Consensus pattern (31 bp):
GGTGCTACCAACTTGTGTGGGCTTTGACTAG
Found at i:3174199 original size:31 final size:31
Alignment explanation
Indices: 3174158--3174240 Score: 98
Period size: 31 Copynumber: 2.7 Consensus size: 31
3174148 CTCGAACGTT
*
3174158 GGTGCCACCAACTCATGTGGGCATTGACTCA
1 GGTGCCACCAACTCATGTGGGCATTGACTAA
* * *
3174189 GGTGCTACCAAGT--TGTGCGAGCTTTGACTAA
1 GGTGCCACCAACTCATGTG-G-GCATTGACTAA
3174220 GGTGCCACCAACTCATGTGGG
1 GGTGCCACCAACTCATGTGGG
3174241 ATTTGACATT
Statistics
Matches: 42, Mismatches: 6, Indels: 8
0.75 0.11 0.14
Matches are distributed among these distances:
29 4 0.10
30 1 0.02
31 32 0.76
32 1 0.02
33 4 0.10
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (31 bp):
GGTGCCACCAACTCATGTGGGCATTGACTAA
Found at i:3174536 original size:31 final size:31
Alignment explanation
Indices: 3174451--3174542 Score: 96
Period size: 31 Copynumber: 3.0 Consensus size: 31
3174441 CTTGACTCAA
* *
3174451 ACTTACGTGCCACCAACTCCTGTGGGCTTTG
1 ACTTAGGTGCCACCAACTCGTGTGGGCTTTG
** * ** *
3174482 ACTCGGGTACTGCAAACAT-GTGTGGGCTTTG
1 ACTTAGGTGCCACCAAC-TCGTGTGGGCTTTG
3174513 ACTTAGGTGCCACCAACTCGTGTGGGCTTT
1 ACTTAGGTGCCACCAACTCGTGTGGGCTTT
3174543 AACATTCTAG
Statistics
Matches: 45, Mismatches: 14, Indels: 4
0.71 0.22 0.06
Matches are distributed among these distances:
30 1 0.02
31 43 0.96
32 1 0.02
ACGTcount: A:0.17, C:0.26, G:0.27, T:0.29
Consensus pattern (31 bp):
ACTTAGGTGCCACCAACTCGTGTGGGCTTTG
Found at i:3174639 original size:31 final size:30
Alignment explanation
Indices: 3174603--3174694 Score: 121
Period size: 31 Copynumber: 3.0 Consensus size: 30
3174593 GACTCAAACG
**
3174603 TAGGTGCCACCAACTCATGTGGGCTTTGAC
1 TAGGTGCCACCAACTTGTGTGGGCTTTGAC
* * *
3174633 TTAGGTGTCACCAACTTGTGCGGGTTTTGAC
1 -TAGGTGCCACCAACTTGTGTGGGCTTTGAC
3174664 TAGAGTGCCACCAACTTGTGTGGGCTTTGAC
1 TAG-GTGCCACCAACTTGTGTGGGCTTTGAC
3174695 GTTCGATGGG
Statistics
Matches: 52, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
30 3 0.06
31 49 0.94
ACGTcount: A:0.18, C:0.23, G:0.28, T:0.30
Consensus pattern (30 bp):
TAGGTGCCACCAACTTGTGTGGGCTTTGAC
Found at i:3174788 original size:149 final size:149
Alignment explanation
Indices: 3164757--3174780 Score: 9667
Period size: 149 Copynumber: 67.2 Consensus size: 149
3164747 GCATAGACTA
* * * *
3164757 AGGTGCCACCAACTCATGTGGGCTTTGACTCGG-GCGT-CATCAA-TACGTGTGGGCTTTGACTA
1 AGGTGCCACCAACTCGTGTGGGCTTTGACTCGGTGCCTGC--CAACT-TGTGCGGGCTTTGACTA
** * * ** * * * * *
3164819 GGGTGCCACCAACTTGTGTGGTCCTCAACAATCTAAGGCTTCATCTCTTTAGATAGGTGCCAACA
63 GGGTGCCACCAACTCATGTGGGCTTTGACATTCTAAGGCTTAACCTCCTTAGATAGGTGCCAACT
* * * *
3164884 AATTTCGACTTCACTCGAATGT
128 AATGTGGACTTGACTCGAACGT
* * * * *** *
3164906 TGGTGCCACCAACTCATGTGGGCTTTGACTCGAGTG-CTGCCAACTTATACAACCATTGACTAGG
1 AGGTGCCACCAACTCGTGTGGGCTTTGACTCG-GTGCCTGCCAACTTGTGCGGGCTTTGACTAGG
** * * * *
3164970 GTGCCACCAACTCATGTCAGCTTTGACATTCTAAGGCTTAACCTCTTTAGACAGCTACCAACTAA
65 GTGCCACCAACTCATGTGGGCTTTGACATTCTAAGGCTTAACCTCCTTAGATAGGTGCCAACTAA
* *
3165035 TGTGGACTTGACTTGAACTT
130 TGTGGACTTGACTCGAACGT
* * * * *
3165055 AGGTGCCACCAACTCGTGTGTGTTTTGACTCGGGTGTC-ACAAACTTGTGTC-GGCTTTGACTAG
1 AGGTGCCACCAACTCGTGTGGGCTTTGACTC-GGTGCCTGCCAACTTGTG-CGGGCTTTGACTAG
* * * * * * * *
3165118 GATGTCACTAACTCGTGTGAGCTTTGACATTCTAAGTCTTAACCTCCTTAGATAGGTCCCAGCTA
64 GGTGCCACCAACTCATGTGGGCTTTGACATTCTAAGGCTTAACCTCCTTAGATAGGTGCCAACTA
* * **
3165183 ATGTGGACTTGAGTTGAAATT
129 ATGTGGACTTGACTCGAACGT
* * * * * *
3165204 AGGTGCTACCAACTCGTGT-GGTTTTGACTC-GAGCGCTGCCAACTTGTGTGGGCTTTAATTA-G
1 AGGTGCCACCAACTCGTGTGGGCTTTGACTCGGTGC-CTGCCAACTTGTGCGGGCTTTGACTAGG
* * * *
3165266 GTGGCCACCAACCCATGTGGGCTTCGACATTCTAAGGCTTAAGCTCCTTAGATAGGTGGCAACTA
65 GT-GCCACCAACTCATGTGGGCTTTGACATTCTAAGGCTTAACCTCCTTAGATAGGTGCCAACTA
* *
3165331 ATGTGGACTTGACTCAAACTT
129 ATGTGGACTTGACTCGAACGT
* * * * * *
3165352 ACGTACCACCAACTCGCGAGGGTTTTGACTCGGGTGCC-GCCAACTTGT-CTAGGCTTTGACTAG
1 AGGTGCCACCAACTCGTGTGGGCTTTGACTC-GGTGCCTGCCAACTTGTGC-GGGCTTTGACTAG
* ** * * * *
3165415 GGTGCCACCAACTCATGTGGGCTTTAACATTCTAAGGCTTGGCATCCTAAAACAGGTGCCAACTA
64 GGTGCCACCAACTCATGTGGGCTTTGACATTCTAAGGCTTAACCTCCTTAGATAGGTGCCAACTA
* * *
3165480 ATTTGGACTTGACACGAATGT
129 ATGTGGACTTGACTCGAACGT
* * * * * * **
3165501 AAGTGCCACTAACTTGTGTGGGCTTTGACTAGG-GTCGC-GCCAGCTTATGCAAGCTTTGACTAG
1 AGGTGCCACCAACTCGTGTGGGCTTTGACTCGGTG-C-CTGCCAACTTGTGCGGGCTTTGACTAG
* * * *
3165564 GGTGCCACCAACTCATATGGGCTTTGACATTCTAAGGCTTAACGTCCTTAGATAAGTGCTAACTA
64 GGTGCCACCAACTCATGTGGGCTTTGACATTCTAAGGCTTAACCTCCTTAGATAGGTGCCAACTA
* *
3165629 ATGTGGACCTGACTCGAACTT
129 ATGTGGACTTGACTCGAACGT
* * * * * * * *
3165650 AGGTGCCACCAACTCATGTAGGATTTGACTCGAGAG-TTGCCAACATGTGTGGGCTTTGACTGGG
1 AGGTGCCACCAACTCGTGTGGGCTTTGACTCG-GTGCCTGCCAACTTGTGCGGGCTTTGACTAGG
* * * * * * *
3165714 GTGCTACCAACTCGTGTGGGCATTAACATTCTAAAGCTTGACCTCCTTAGA-ACAGTGCCAACTA
65 GTGCCACCAACTCATGTGGGCTTTGACATTCTAAGGCTTAACCTCCTTAGATA-GGTGCCAACTA
* * *
3165778 AT-TAGGGCTTGACTTGGACGT
129 ATGT-GGACTTGACTCGAACGT
* ** * * **
3165799 TGGTGCCACCAACTCGTGTGGGCTTTGACTCAGGTG-CTATCAACTTATGCGAGCTTTGACTAAC
1 AGGTGCCACCAACTCGTGTGGGCTTTGACTC-GGTGCCTGCCAACTTGTGCGGGCTTTGACTAGG
* * * *
3165863 GTGCCACCAACTCATGTGGGATTTGACATTCTAGGGCTTAACCTCCTTAAACAGCG-GCCAACTA
65 GTGCCACCAACTCATGTGGGCTTTGACATTCTAAGGCTTAACCTCCTTAGATAG-GTGCCAACTA
* * *
3165927 ATGTGCACTTGACTTGAACTT
129 ATGTGGACTTGACTCGAACGT
* * * * *
3165948 AGGTGCCACCAACTCTTGTGGGCTTTGACTCGAGTGCC-GCTAACTTGTGCGGGCTATAATTAGG
1 AGGTGCCACCAACTCGTGTGGGCTTTGACTCG-GTGCCTGCCAACTTGTGCGGGCTTTGACTAGG
* * * * *
3166012 GTGCCACCAACTCATCTGGGCTTTCATATTCTAAGGCTTAACCTCCTTTGATAGGTGGCAACTAA
65 GTGCCACCAACTCATGTGGGCTTTGACATTCTAAGGCTTAACCTCCTTAGATAGGTGCCAACTAA
* * *
3166077 TGCGGACTTGACTCAAACTT
130 TGTGGACTTGACTCGAACGT
* * * * * * *
3166097 ACGTGCCACCAACTCCTGTGGGCTTTGACTCGG-GTACTGCCAACATGTGTGGGTTTTGACTACG
1 AGGTGCCACCAACTCGTGTGGGCTTTGACTCGGTG-CCTGCCAACTTGTGCGGGCTTTGACTAGG
* * * * * *
3166161 GTGCCACCAACTCGTGTGGGCCTTAACATTCTAAGGCTTGATCTCCTTAGATAAGG-GCCAACAA
65 GTGCCACCAACTCATGTGGGCTTTGACATTCTAAGGCTTAACCTCCTTAGAT-AGGTGCCAACTA
* *
3166225 ATTTGGACTTCACTCGAACGT
129 ATGTGGACTTGACTCGAACGT
* * *
3166246 TGGTGCCACCAACTCATGTGGGCTTTGACTCGAGTGCC-GCCAACTTGTAG-GAGCTTTGACTAG
1 AGGTGCCACCAACTCGTGTGGGCTTTGACTCG-GTGCCTGCCAACTTGT-GCGGGCTTTGACTAG
* * * * **
3166309 GGTGCCACCAACTCATGTGGGCTTCGACATTCTAAGCCTTAACCTCTTTAGACAGCAGCCAACTA
64 GGTGCCACCAACTCATGTGGGCTTTGACATTCTAAGGCTTAACCTCCTTAGATAGGTGCCAACTA
* * * * *
3166374 ATCTAGACTTTACTAGAACTT
129 ATGTGGACTTGACTCGAACGT
* * *
3166395 AGGTGCCACCAACTCGTGTGCGCTTTGACTCTGGTGCC-GCAAACTTGTGCAGGCTTTGACTAGG
1 AGGTGCCACCAACTCGTGTGGGCTTTGACTC-GGTGCCTGCCAACTTGTGCGGGCTTTGACTAGG
* * * * ** * * *
3166459 ATGTCACCAACTCGTGTGAGCTTTGACATTCTAAGTTTTAACCTCCTTAGATAGCTCCCAGCTAA
65 GTGCCACCAACTCATGTGGGCTTTGACATTCTAAGGCTTAACCTCCTTAGATAGGTGCCAACTAA
* **
3166524 TGTGGACTTGAGTCGAAATT
130 TGTGGACTTGACTCGAACGT
* *
3166544 AGGTGCTACCAACTCGTGTGGG-TTCTGACTCGAGTG-CTGTCTACAACTTGTGTGGGCTTTGAC
1 AGGTGCCACCAACTCGTGTGGGCTT-TGACTCG-GTGCCTG-C--CAACTTGTGCGGGCTTTGAC
* ** * * *
3166607 TAGGGTGCCACCAACTCATGTGGGCTTTAACATTCTAAGGCTTGGCATCCTCAAATAGGTGCCAA
61 TAGGGTGCCACCAACTCATGTGGGCTTTGACATTCTAAGGCTTAACCTCCTTAGATAGGTGCCAA
* * *
3166672 CTAATTTGGACTTGACTTGAATGT
126 CTAATGTGGACTTGACTCGAACGT
* * * * * * *
3166696 AAGTGCCACCAATTC-TGCGAGCTTTGACTCGGGTGCC-GCCAACTTGAGCGAGCTTTGACTAAG
1 AGGTGCCACCAACTCGTGTGGGCTTTGACTC-GGTGCCTGCCAACTTGTGCGGGCTTTGACTAGG
* * ** *
3166759 GTGCCACCAACTCATGTGGGCTTTGACATTCGAAAGCTTAATGTCCTTAGATAGGTGCCAACTAT
65 GTGCCACCAACTCATGTGGGCTTTGACATTCTAAGGCTTAACCTCCTTAGATAGGTGCCAACTAA
*
3166824 TGTGGACCTGACTCGAACGT
130 TGTGGACTTGACTCGAACGT
* *
3166844 AGGTGCCACCAACTCGTGTAGGCTTTGACTCGGGTG-CTGCCAACTTGTGTGGGCTTTGACTAGG
1 AGGTGCCACCAACTCGTGTGGGCTTTGACTC-GGTGCCTGCCAACTTGTGCGGGCTTTGACTAGG
* ** * * * * **
3166908 GTGCTACCAACTTGTGTGGGCTTTAACATTCTAAGGCTTGACCTTCTTAAACCGGTGCCAACTAA
65 GTGCCACCAACTCATGTGGGCTTTGACATTCTAAGGCTTAACCTCCTTAGATAGGTGCCAACTAA
*
3166973 TTTGGACTTGACTCGAACGT
130 TGTGGACTTGACTCGAACGT
* * * * * * *
3166993 TGGTGCCACCAACTCATGTGGGCATTGACTCAGGTG-CTACCAAGTTGTGCGAGCTTTGACTAAG
1 AGGTGCCACCAACTCGTGTGGGCTTTGACTC-GGTGCCTGCCAACTTGTGCGGGCTTTGACTAGG
* * * *
3167057 GTGCCACCAACTCATGTGGGATTTGACATTCTAGGGCTTAACCTCCTTAAACAGCG-GCCAACTA
65 GTGCCACCAACTCATGTGGGCTTTGACATTCTAAGGCTTAACCTCCTTAGATAG-GTGCCAACTA
* * *
3167121 ATGTGCACTTGACTTGAACTT
129 ATGTGGACTTGACTCGAACGT
* * * * *
3167142 AGGTGCCACCAACTCTTGTGGGCTTTGACTCGAGTGCC-GCTAACTTGTGCGGGCTATAATTAGG
1 AGGTGCCACCAACTCGTGTGGGCTTTGACTCG-GTGCCTGCCAACTTGTGCGGGCTTTGACTAGG
* * * * *
3167206 GTGCCACCAACTCATCTGGGCTTTCATATTCTAAGGCTTAACCTCCTTTGATAGGTGGCAACTAA
65 GTGCCACCAACTCATGTGGGCTTTGACATTCTAAGGCTTAACCTCCTTAGATAGGTGCCAACTAA
* * *
3167271 TGCGGACTTGACTCAAACTT
130 TGTGGACTTGACTCGAACGT
* * * * * * *
3167291 ACGTGCCACCAACTCCTGTGGGCTTTGACTCGG-GTACTGCCAACATGTGTGGGTTTTGACTACG
1 AGGTGCCACCAACTCGTGTGGGCTTTGACTCGGTG-CCTGCCAACTTGTGCGGGCTTTGACTAGG
* * * * * *
3167355 GTGCCACCAACTCGTGTGGGCCTTAACATTCTAAGGCTTGATCTCCTTAGATAAGG-GCCAACAA
65 GTGCCACCAACTCATGTGGGCTTTGACATTCTAAGGCTTAACCTCCTTAGAT-AGGTGCCAACTA
* *
3167419 ATTTGGACTTCACTCGAACGT
129 ATGTGGACTTGACTCGAACGT
* * *
3167440 TGGTGCCACCAACTCATGTGGGCTTTGACTCGAGTGCC-GCCAACTTGTAG-GAGCTTTGACTAG
1 AGGTGCCACCAACTCGTGTGGGCTTTGACTCG-GTGCCTGCCAACTTGT-GCGGGCTTTGACTAG
* * * * **
3167503 GGTGCCACCAACTCATGTGGGCTTCGACATTCTAAGCCTTAACCTCTTTAGACAGCAGCCAACTA
64 GGTGCCACCAACTCATGTGGGCTTTGACATTCTAAGGCTTAACCTCCTTAGATAGGTGCCAACTA
* * * * *
3167568 ATCTAGACTTTACTAGAACTT
129 ATGTGGACTTGACTCGAACGT
* * *
3167589 AGGTGCCACCAACTCGTGTGCGCTTTGACTCTGGTGCC-GCAAACTTGTGCAGGCTTTGACTAGG
1 AGGTGCCACCAACTCGTGTGGGCTTTGACTC-GGTGCCTGCCAACTTGTGCGGGCTTTGACTAGG
* * * * ** * * *
3167653 ATGTCACCAACTCGTGTGAGCTTTGACATTCTAAGTTTTAACCTCCTTAGATAGCTCCCAGCTAA
65 GTGCCACCAACTCATGTGGGCTTTGACATTCTAAGGCTTAACCTCCTTAGATAGGTGCCAACTAA
* **
3167718 TGTGGACTTGAGTCGAAATT
130 TGTGGACTTGACTCGAACGT
* * *
3167738 AGGTGCTACCAACTCGTGTGGGTTTTGACTCGAGTG-CTGTCTACAACTTGTGTGGGCTTTGACT
1 AGGTGCCACCAACTCGTGTGGGCTTTGACTCG-GTGCCTG-C--CAACTTGTGCGGGCTTTGACT
* ** * *
3167802 AGGGTGCCACCAACTCATGTGGGCTTTAACATTCTAAGGCTTGGCATCCTTAAATAGGTGCCAAC
62 AGGGTGCCACCAACTCATGTGGGCTTTGACATTCTAAGGCTTAACCTCCTTAGATAGGTGCCAAC
* * *
3167867 TAATTTGGACTTGACTTGAATGT
127 TAATGTGGACTTGACTCGAACGT
* * * * * *
3167890 AAGTGCCACCAATTC-TGCGGGCTTTGACTCGGGTGCC-GCCAACTTGAGCGAGCTTTGACTAAG
1 AGGTGCCACCAACTCGTGTGGGCTTTGACTC-GGTGCCTGCCAACTTGTGCGGGCTTTGACTAGG
* * ** *
3167953 GTGCCACCAACTCATGTGGGCTTTGACATTCGAAAGCTTAATGTCCTTAGATAGGTGCCAACTAT
65 GTGCCACCAACTCATGTGGGCTTTGACATTCTAAGGCTTAACCTCCTTAGATAGGTGCCAACTAA
*
3168018 TGTGGACCTGACTCGAACGT
130 TGTGGACTTGACTCGAACGT
* *
3168038 AGGTGCCACCAACTCGTGTAGGCTTTGACTCGCGTG-CTGCCAACTTGTGTGGGCTTTGACTAGG
1 AGGTGCCACCAACTCGTGTGGGCTTTGACTCG-GTGCCTGCCAACTTGTGCGGGCTTTGACTAGG
* ** * * * * * ** *
3168102 GTGCTACCAACTTGTGTGGGCTTTAAGATTCTAAGGCTTGACCTTCTTAAACCGGTGCCACCTAA
65 GTGCCACCAACTCATGTGGGCTTTGACATTCTAAGGCTTAACCTCCTTAGATAGGTGCCAACTAA
* *
3168167 TTTGGACTTGACTTGAACGT
130 TGTGGACTTGACTCGAACGT
* * * * * * *
3168187 TGGTGCCACCAACTCATGTGGGCATTGACTCAGGTG-CTACCAAGTTGTGCGAGCTTTGACTAAG
1 AGGTGCCACCAACTCGTGTGGGCTTTGACTC-GGTGCCTGCCAACTTGTGCGGGCTTTGACTAGG
* * * *
3168251 GTGCCACCAACTCATGTGGGATTTGACATTCTAGGGCTTAACCTCCTTAAACAGCG-GCCAACTA
65 GTGCCACCAACTCATGTGGGCTTTGACATTCTAAGGCTTAACCTCCTTAGATAG-GTGCCAACTA
* * *
3168315 ATGTGCACTTGACTTGAACTT
129 ATGTGGACTTGACTCGAACGT
* * * * *
3168336 AGGTGCCACCAACTCTTGTGGGCTTTGACTCGAGTGCC-GCTAACTTGTGCGGGCTATAATTAGG
1 AGGTGCCACCAACTCGTGTGGGCTTTGACTCG-GTGCCTGCCAACTTGTGCGGGCTTTGACTAGG
* * * * *
3168400 GTGCCACCAACTCATCTGGGCTTTCATATTCTAAGGCTTAACCTCCTTTGATAGGTGGCAACTAA
65 GTGCCACCAACTCATGTGGGCTTTGACATTCTAAGGCTTAACCTCCTTAGATAGGTGCCAACTAA
* * *
3168465 TGCGGACTTGACTCAAACTT
130 TGTGGACTTGACTCGAACGT
* * * * * * *
3168485 ACGTGCCACCAACTCCTGTGGGCTTTGACTCGG-GTACTGCCAACATGTGTGGGTTTTGACTACG
1 AGGTGCCACCAACTCGTGTGGGCTTTGACTCGGTG-CCTGCCAACTTGTGCGGGCTTTGACTAGG
* * * * * *
3168549 GTGCCACCAACTCGTGTGGGCCTTAACATTCTAAGGCTTGATCTCCTTAGATAAGG-GCCAACAA
65 GTGCCACCAACTCATGTGGGCTTTGACATTCTAAGGCTTAACCTCCTTAGAT-AGGTGCCAACTA
* *
3168613 ATTTGGACTTCACTCGAACGT
129 ATGTGGACTTGACTCGAACGT
* * *
3168634 TGGTGCCACCAACTCATGTGGGCTTTGACTCGAGTGCC-GCCAACTTGTAG-GAGCTTTGACTAG
1 AGGTGCCACCAACTCGTGTGGGCTTTGACTCG-GTGCCTGCCAACTTGT-GCGGGCTTTGACTAG
* * * * **
3168697 GGTGCCACCAACTCATGTGGGCTTCGACATTCTAAGCCTTAACCTCTTTAGACAGCAGCCAACTA
64 GGTGCCACCAACTCATGTGGGCTTTGACATTCTAAGGCTTAACCTCCTTAGATAGGTGCCAACTA
* * * * *
3168762 ATCTAGACTTTACTAGAACTT
129 ATGTGGACTTGACTCGAACGT
* * *
3168783 AGGTGCCACCAACTCGTGTGCGCTTTGACTCTGGTGCC-GCAAACTTGTGCAGGCTTTGACTAGG
1 AGGTGCCACCAACTCGTGTGGGCTTTGACTC-GGTGCCTGCCAACTTGTGCGGGCTTTGACTAGG
* * * * ** * * *
3168847 ATGTCACCAACTCGTGTGAGCTTTGACATTCTAAGTTTTAACCTCCTTAGATAGCTCCCAGCTAA
65 GTGCCACCAACTCATGTGGGCTTTGACATTCTAAGGCTTAACCTCCTTAGATAGGTGCCAACTAA
* **
3168912 TGTGGACTTGAGTCGAAATT
130 TGTGGACTTGACTCGAACGT
* * *
3168932 AGGTGCTACCAACTCGTGTGGGTTTTGACTCGAGTG-CTGTCTACAACTTGTGTGGGCTTTGACT
1 AGGTGCCACCAACTCGTGTGGGCTTTGACTCG-GTGCCTG-C--CAACTTGTGCGGGCTTTGACT
* ** * * *
3168996 AGGGTGCCACCAACTCATGTGGGCTTTAACATTCTAAGGCTTGGCATCCTCAAATAGGTGCCAAC
62 AGGGTGCCACCAACTCATGTGGGCTTTGACATTCTAAGGCTTAACCTCCTTAGATAGGTGCCAAC
* * *
3169061 TAATTTGGACTTGACTTGAATGT
127 TAATGTGGACTTGACTCGAACGT
* * * * * *
3169084 AAGTGCCACCAATTC-TGCGGGCTTTGACTCGGGTGCC-GCCAACTTGAGCGAGCTTTGACTAAG
1 AGGTGCCACCAACTCGTGTGGGCTTTGACTC-GGTGCCTGCCAACTTGTGCGGGCTTTGACTAGG
* * ** *
3169147 GTGCCACCAACTCATGTGGGCTTTGACATTCGAAAGCTTAATGTCCTTAGATAGGTGCCAACTAT
65 GTGCCACCAACTCATGTGGGCTTTGACATTCTAAGGCTTAACCTCCTTAGATAGGTGCCAACTAA
*
3169212 TGTGGACCTGACTCGAACGT
130 TGTGGACTTGACTCGAACGT
* *
3169232 AGGTGCCACCAACTCGTGTAGGCTTTGACTCGCGTG-CTGCCAACTTGTGTGGGCTTTGACTAGG
1 AGGTGCCACCAACTCGTGTGGGCTTTGACTCG-GTGCCTGCCAACTTGTGCGGGCTTTGACTAGG
* ** * * * * * ** *
3169296 GTGCTACCAACTTGTGTGGGCTTTAAGATTCTAAGGCTTGACCTTCTTAAACCGGTGCCACCTAA
65 GTGCCACCAACTCATGTGGGCTTTGACATTCTAAGGCTTAACCTCCTTAGATAGGTGCCAACTAA
* *
3169361 TTTGGACTTGACTTGAACGT
130 TGTGGACTTGACTCGAACGT
* * * * * * *
3169381 TGGTGCCACCAACTCATGTGGGCATTGACTCAGGTG-CTACCAAGTTGTGCGAGCTTTGACTAAG
1 AGGTGCCACCAACTCGTGTGGGCTTTGACTC-GGTGCCTGCCAACTTGTGCGGGCTTTGACTAGG
* * * *
3169445 GTGCCACCAACTCATGTGGGATTTGACATTCTAGGGCTTAACCTCCTTAAACAGCG-GCCAACTA
65 GTGCCACCAACTCATGTGGGCTTTGACATTCTAAGGCTTAACCTCCTTAGATAG-GTGCCAACTA
* * *
3169509 ATGTGCACTTGACTTGAACTT
129 ATGTGGACTTGACTCGAACGT
* * * * *
3169530 AGGTGCCACCAACTCTTGTGGGCTTTGACTCGAGTGCC-GCTAACTTGTGCGGGCTATAATTAGG
1 AGGTGCCACCAACTCGTGTGGGCTTTGACTCG-GTGCCTGCCAACTTGTGCGGGCTTTGACTAGG
* * * * *
3169594 GTGCCACCAACTCATCTGGGCTTTCATATTCTAAGGCTTAACCTCCTTTGATAGGTGGCAACTAA
65 GTGCCACCAACTCATGTGGGCTTTGACATTCTAAGGCTTAACCTCCTTAGATAGGTGCCAACTAA
* * *
3169659 TGCGGACTTGACTCAAACTT
130 TGTGGACTTGACTCGAACGT
* * * * * * *
3169679 ACGTGCCACCAACTCCTGTGGGCTTTGACTCGG-GTACTGCCAACATGTGTGGGTTTTGACTACG
1 AGGTGCCACCAACTCGTGTGGGCTTTGACTCGGTG-CCTGCCAACTTGTGCGGGCTTTGACTAGG
* * * * * *
3169743 GTGCCACCAACTCGTGTGGGCCTTAACATTCTAAGGCTTGATCTCCTTAGATAAGG-GCCAACAA
65 GTGCCACCAACTCATGTGGGCTTTGACATTCTAAGGCTTAACCTCCTTAGAT-AGGTGCCAACTA
* *
3169807 ATTTGGACTTCACTCGAACGT
129 ATGTGGACTTGACTCGAACGT
* * * *
3169828 TGGTGCCACCAACTCATGTGGGCTTTGACTCGAGTGCC-GCCATCTTGTAG-GAGCTTTGACTAG
1 AGGTGCCACCAACTCGTGTGGGCTTTGACTCG-GTGCCTGCCAACTTGT-GCGGGCTTTGACTAG
* * * * **
3169891 GGTGCCACCAACTCATGTGGGCTTCGACATTCTAAGCCTTAACCTCTTTAGACAGCAGCCAACTA
64 GGTGCCACCAACTCATGTGGGCTTTGACATTCTAAGGCTTAACCTCCTTAGATAGGTGCCAACTA
* * ** * *
3169956 ATCTAGACTTTTCTAGAACTT
129 ATGTGGACTTGACTCGAACGT
* * *
3169977 AGGTGCCACCAACTCGTGTGCGCTTTGACTCTGGTGCC-GCAAACTTGTGCAGGCTTTGACTAGG
1 AGGTGCCACCAACTCGTGTGGGCTTTGACTC-GGTGCCTGCCAACTTGTGCGGGCTTTGACTAGG
* * * * ** * * *
3170041 ATGTCACCAACTCGTGTGAGCTTTGACATTCTAAGTTTTAACCTCCTTAGATAGCTCCCAGCTAA
65 GTGCCACCAACTCATGTGGGCTTTGACATTCTAAGGCTTAACCTCCTTAGATAGGTGCCAACTAA
* **
3170106 TGTGGACTTGAGTCGAAATT
130 TGTGGACTTGACTCGAACGT
* * *
3170126 AGGTGCTACCAACTCGTGTGGGTTTTGACTCGAGTG-CTGTCTACAACTTGTGTGGGCTTTGACT
1 AGGTGCCACCAACTCGTGTGGGCTTTGACTCG-GTGCCTG-C--CAACTTGTGCGGGCTTTGACT
* ** * * *
3170190 AGGGTGCCACCAACTCATGTGGGCTTTAACATTCTAAGGCTTGGCATCCTCAAATAGGTGCCAAC
62 AGGGTGCCACCAACTCATGTGGGCTTTGACATTCTAAGGCTTAACCTCCTTAGATAGGTGCCAAC
* * *
3170255 TAATTTGGACTTGACTTGAATGT
127 TAATGTGGACTTGACTCGAACGT
* * * * * *
3170278 AAGTGCCACCAATTC-TGCGGGCTTTGACTCGGGTGCC-GCCAACTTGAGCGAGCTTTGACTAAG
1 AGGTGCCACCAACTCGTGTGGGCTTTGACTC-GGTGCCTGCCAACTTGTGCGGGCTTTGACTAGG
* * ** *
3170341 GTGCCACCAACTCATGTGGGCTTTGACATTCGAAAGCTTAATGTCCTTAGATAGGTGCCAACTAT
65 GTGCCACCAACTCATGTGGGCTTTGACATTCTAAGGCTTAACCTCCTTAGATAGGTGCCAACTAA
*
3170406 TGTGGACCTGACTCGAACGT
130 TGTGGACTTGACTCGAACGT
* *
3170426 AGGTGCCACCAACTCGTGTAGGCTTTGACTCGCGTG-CTGCCAACTTGTGTGGGCTTTGACTAGG
1 AGGTGCCACCAACTCGTGTGGGCTTTGACTCG-GTGCCTGCCAACTTGTGCGGGCTTTGACTAGG
* ** * * * * * ** *
3170490 GTGCTACCAACTTGTGTGGGCTTTAAGATTCTAAGGCTTGACCTTCTTAAACCGGTGCCACCTAA
65 GTGCCACCAACTCATGTGGGCTTTGACATTCTAAGGCTTAACCTCCTTAGATAGGTGCCAACTAA
* *
3170555 TTTGGACTTGACTTGAACGT
130 TGTGGACTTGACTCGAACGT
* * * * * * *
3170575 TGGTGCCACCAACTCATGTGGGCATTGACTCAGGTG-CTACCAAGTTGTGCGAGCTTTGACTAAG
1 AGGTGCCACCAACTCGTGTGGGCTTTGACTC-GGTGCCTGCCAACTTGTGCGGGCTTTGACTAGG
* * * *
3170639 GTGCCACCAACTCATGTGGGATTTGACATTCTAGGGCTTAACCTCCTTAAACAGCG-GCCAACTA
65 GTGCCACCAACTCATGTGGGCTTTGACATTCTAAGGCTTAACCTCCTTAGATAG-GTGCCAACTA
* * *
3170703 ATGTGCACTTGACTTGAACTT
129 ATGTGGACTTGACTCGAACGT
* * * * *
3170724 AGGTGCCACCAACTCTTGTGGGCTTTGACTCGAGTGCC-GCTAACTTGTGCGGGCTATAATTAGG
1 AGGTGCCACCAACTCGTGTGGGCTTTGACTCG-GTGCCTGCCAACTTGTGCGGGCTTTGACTAGG
* * * * *
3170788 GTGCCACCAACTCATCTGGGCTTTCATATTCTAAGGCTTAACCTCCTTTGATAGGTGGCAACTAA
65 GTGCCACCAACTCATGTGGGCTTTGACATTCTAAGGCTTAACCTCCTTAGATAGGTGCCAACTAA
* * *
3170853 TGCGGACTTGACTCAAACTT
130 TGTGGACTTGACTCGAACGT
* * * * * * *
3170873 ACGTGCCACCAACTCCTGTGGGCTTTGACTCGG-GTACTGCCAACATGTGTGGGTTTTGACTACG
1 AGGTGCCACCAACTCGTGTGGGCTTTGACTCGGTG-CCTGCCAACTTGTGCGGGCTTTGACTAGG
* * * * * *
3170937 GTGCCACCAACTCGTGTGGGCCTTAACATTCTAAGGCTTGATCTCCTTAGATAAGG-GCCAACAA
65 GTGCCACCAACTCATGTGGGCTTTGACATTCTAAGGCTTAACCTCCTTAGAT-AGGTGCCAACTA
* *
3171001 ATTTGGACTTCACTCGAACGT
129 ATGTGGACTTGACTCGAACGT
* * *
3171022 TGGTGCCACCAACTCATGTGGGCTTTGACTCGAGTGCC-GCCAACTTGTAG-GAGCTTTGACTAG
1 AGGTGCCACCAACTCGTGTGGGCTTTGACTCG-GTGCCTGCCAACTTGT-GCGGGCTTTGACTAG
* * * * **
3171085 GGTGCCACCAACTCATGTGGGCTTCGACATTCTAAGCCTTAACCTCTTTAGACAGCAGCCAACTA
64 GGTGCCACCAACTCATGTGGGCTTTGACATTCTAAGGCTTAACCTCCTTAGATAGGTGCCAACTA
* * * * *
3171150 ATCTAGACTTTACTAGAACTT
129 ATGTGGACTTGACTCGAACGT
* * *
3171171 AGGTGCCACCAACTCGTGTGCGCTTTGACTCTGGTGCC-GCAAACTTGTGCAGGCTTTGACTAGG
1 AGGTGCCACCAACTCGTGTGGGCTTTGACTC-GGTGCCTGCCAACTTGTGCGGGCTTTGACTAGG
* * * * ** * * *
3171235 ATGTCACCAACTCGTGTGAGCTTTGACATTCTAAGTTTTAACCTCCTTAGATAGCTCCCAGCTAA
65 GTGCCACCAACTCATGTGGGCTTTGACATTCTAAGGCTTAACCTCCTTAGATAGGTGCCAACTAA
* **
3171300 TGTGGACTTGAGTCGAAATT
130 TGTGGACTTGACTCGAACGT
* * *
3171320 AGGTGCTACCAACTCGTGTGGGTTTTGACTCGAGTG-CTGTCTACAACTTGTGTGGGCTTTGACT
1 AGGTGCCACCAACTCGTGTGGGCTTTGACTCG-GTGCCTG-C--CAACTTGTGCGGGCTTTGACT
* ** * * *
3171384 AGGGTGCCACCAACTCATGTGGGCTTTAACATTCTAAGGCTTGGCATCCTCAAATAGGTGCCAAC
62 AGGGTGCCACCAACTCATGTGGGCTTTGACATTCTAAGGCTTAACCTCCTTAGATAGGTGCCAAC
* * *
3171449 TAATTTGGACTTGACTTGAATGT
127 TAATGTGGACTTGACTCGAACGT
* * * * * *
3171472 AAGTGCCACCAATTC-TGCGGGCTTTGACTCGGGTGCC-GCCAACTTGAGCGAGCTTTGACTAAG
1 AGGTGCCACCAACTCGTGTGGGCTTTGACTC-GGTGCCTGCCAACTTGTGCGGGCTTTGACTAGG
* * ** *
3171535 GTGCCACCAACTCATGTGGGCTTTGACATTCGAAAGCTTAATGTCCTTAGATAGGTGCCAACTAT
65 GTGCCACCAACTCATGTGGGCTTTGACATTCTAAGGCTTAACCTCCTTAGATAGGTGCCAACTAA
*
3171600 TGTGGACCTGACTCGAACGT
130 TGTGGACTTGACTCGAACGT
* *
3171620 AGGTGCCACCAACTCGTGTAGGCTTTGACTCGCGTG-CTGCCAACTTGTGTGGGCTTTGACTAGG
1 AGGTGCCACCAACTCGTGTGGGCTTTGACTCG-GTGCCTGCCAACTTGTGCGGGCTTTGACTAGG
* ** * * * * * ** *
3171684 GTGCTACCAACTTGTGTGGGCTTTAAGATTCTAAGGCTTGACCTTCTTAAACCGGTGCCACCTAA
65 GTGCCACCAACTCATGTGGGCTTTGACATTCTAAGGCTTAACCTCCTTAGATAGGTGCCAACTAA
* *
3171749 TTTGGACTTGACTTGAACGT
130 TGTGGACTTGACTCGAACGT
* * * * * * *
3171769 TGGTGCCACCAACTCATGTGGGCATTGACTCAGGTG-CTACCAAGTTGTGCGAGCTTTGACTAAG
1 AGGTGCCACCAACTCGTGTGGGCTTTGACTC-GGTGCCTGCCAACTTGTGCGGGCTTTGACTAGG
* * * *
3171833 GTGCCACCAACTCATGTGGGATTTGACATTCTAGGGCTTAACCTCCTTAAACAGCG-GCCAACTA
65 GTGCCACCAACTCATGTGGGCTTTGACATTCTAAGGCTTAACCTCCTTAGATAG-GTGCCAACTA
* * *
3171897 ATGTGCACTTGACTTGAACTT
129 ATGTGGACTTGACTCGAACGT
* * * * *
3171918 AGGTGCCACCAACTCTTGTGGGCTTTGACTCGAGTGCC-GCTAACTTGTGCGGGCTATAATTAGG
1 AGGTGCCACCAACTCGTGTGGGCTTTGACTCG-GTGCCTGCCAACTTGTGCGGGCTTTGACTAGG
* * * * *
3171982 GTGCCACCAACTCATCTGGGCTTTCATATTCTAAGGCTTAACCTCCTTTGATAGGTGGCAACTAA
65 GTGCCACCAACTCATGTGGGCTTTGACATTCTAAGGCTTAACCTCCTTAGATAGGTGCCAACTAA
* ** *
3172047 TGCGGACTTGACTTAAACTT
130 TGTGGACTTGACTCGAACGT
* * * * * * *
3172067 ACGTGCCACCAACTCCTGTGGGCTTTGACTCGG-GTACTGCCAACATGTGTGGGTTTTGACTACG
1 AGGTGCCACCAACTCGTGTGGGCTTTGACTCGGTG-CCTGCCAACTTGTGCGGGCTTTGACTAGG
* * * * * *
3172131 GTGCCACCAACTCGTGTGGGCCTTAACATTCTAAGGCTTGATCTCCTTAGATAAGG-GCCAACAA
65 GTGCCACCAACTCATGTGGGCTTTGACATTCTAAGGCTTAACCTCCTTAGAT-AGGTGCCAACTA
* *
3172195 ATTTGGACTTCACTCGAACGT
129 ATGTGGACTTGACTCGAACGT
* * *
3172216 TGGTGCCACCAACTCATGTGGGCTTTGACTCGAGTGCC-GCCAACTTGTAG-GAGCTTTGACTAG
1 AGGTGCCACCAACTCGTGTGGGCTTTGACTCG-GTGCCTGCCAACTTGT-GCGGGCTTTGACTAG
* * * * **
3172279 GGTGCCACCAACTCATGTGGGCTTCGACATTCTAAGCCTTAACCTCTTTAGACAGCAGCCAACTA
64 GGTGCCACCAACTCATGTGGGCTTTGACATTCTAAGGCTTAACCTCCTTAGATAGGTGCCAACTA
* * * * *
3172344 ATCTAGACTTTACTAGAACTT
129 ATGTGGACTTGACTCGAACGT
* * *
3172365 AGGTGCCACCAACTCGTGTGCGCTTTGACTCTGGTGCC-GCAAACTTGTGCAGGCTTTGACTAGG
1 AGGTGCCACCAACTCGTGTGGGCTTTGACTC-GGTGCCTGCCAACTTGTGCGGGCTTTGACTAGG
* * * * ** * * *
3172429 ATGTCACCAACTCGTGTGAGCTTTGACATTCTAAGTTTTAACCTCCTTAGATAGCTCCCAGCTAA
65 GTGCCACCAACTCATGTGGGCTTTGACATTCTAAGGCTTAACCTCCTTAGATAGGTGCCAACTAA
* **
3172494 TGTGGACTTGAGTCGAAATT
130 TGTGGACTTGACTCGAACGT
* * * *
3172514 AGGTGCTACCAACTCGTGTGGGTTTTGACTCGAGTG-CTGTCTACAACTTGTGTGGGCTTGGACT
1 AGGTGCCACCAACTCGTGTGGGCTTTGACTCG-GTGCCTG-C--CAACTTGTGCGGGCTTTGACT
* ** * * *
3172578 AGGGTGCCACCAACTCATGTGGGCTTTAACATTCTAAGGCTTGGCATCCTCAAATAGGTGCCAAC
62 AGGGTGCCACCAACTCATGTGGGCTTTGACATTCTAAGGCTTAACCTCCTTAGATAGGTGCCAAC
* * *
3172643 TAATTTGGACTTGACTTGAATGT
127 TAATGTGGACTTGACTCGAACGT
* * * * * *
3172666 AAGTGCCACCAATTC-TGCGGGCTTTGACTCGGGTGCC-GCCAACTTGAGCGAGCTTTGACTAAG
1 AGGTGCCACCAACTCGTGTGGGCTTTGACTC-GGTGCCTGCCAACTTGTGCGGGCTTTGACTAGG
* * ** *
3172729 GTGCCACCAACTCATGTGGGCTTTGACATTCGAAAGCTTAATGTCCTTAGATAGGTGCCAACTAT
65 GTGCCACCAACTCATGTGGGCTTTGACATTCTAAGGCTTAACCTCCTTAGATAGGTGCCAACTAA
* *
3172794 TGTGGACCTAACTCGAACGT
130 TGTGGACTTGACTCGAACGT
* *
3172814 AGGTGCCACCAACTCGTGTAGGCTTTGACTCGGGTG-CTGCCAACTTGTGTGGGCTTTGACTAGG
1 AGGTGCCACCAACTCGTGTGGGCTTTGACTC-GGTGCCTGCCAACTTGTGCGGGCTTTGACTAGG
* ** * * * ** * ** *
3172878 GTGCTACCAACTTGTGTGGGCTTTAAGATTCTAAGGCTTGACCTTTTTAAACCGGTGCCACCTAA
65 GTGCCACCAACTCATGTGGGCTTTGACATTCTAAGGCTTAACCTCCTTAGATAGGTGCCAACTAA
* *
3172943 TTTGGACTTGACTTGAACGT
130 TGTGGACTTGACTCGAACGT
* * * * * * *
3172963 TGGTGCCACCAACTCATGTGGGCATTGACTCAGGTG-CTACCAAGTTGTGCGAGCTTTGACTAAG
1 AGGTGCCACCAACTCGTGTGGGCTTTGACTC-GGTGCCTGCCAACTTGTGCGGGCTTTGACTAGG
* * * *
3173027 GTGCCACCAACTCATGTGGGATTTGACATTCTAGGGCTTAACCTCCTTAAACAGCG-GCCAACTA
65 GTGCCACCAACTCATGTGGGCTTTGACATTCTAAGGCTTAACCTCCTTAGATAG-GTGCCAACTA
* * *
3173091 ATGTGCACTTGACTTGAACTT
129 ATGTGGACTTGACTCGAACGT
* * * * *
3173112 AGGTGCCACCAACTCTTGTGGGCTTTGACTCGAGTGCC-GCTAACTTGTGCGGGCTATAATTAGG
1 AGGTGCCACCAACTCGTGTGGGCTTTGACTCG-GTGCCTGCCAACTTGTGCGGGCTTTGACTAGG
* * * * *
3173176 GTGCCACCAACTCATCTGGGCTTTCATATTCTAAGGCTTAACCTCCTTTGATAGGTGGCAACTAA
65 GTGCCACCAACTCATGTGGGCTTTGACATTCTAAGGCTTAACCTCCTTAGATAGGTGCCAACTAA
* * *
3173241 TGCGGACTTGACTCAAACTT
130 TGTGGACTTGACTCGAACGT
* * * * * * *
3173261 ACGTGCCACCAACTCCTGTGGGCTTTGACTCGG-GTACTGCCAACATGTGTGGGTTTTGACTACG
1 AGGTGCCACCAACTCGTGTGGGCTTTGACTCGGTG-CCTGCCAACTTGTGCGGGCTTTGACTAGG
* * * * * *
3173325 GTGCCACCAACTCGTGTGGGCGTTAACATTCTAAGGCTTGATCTCCTTAGATAAGG-GCCAACAA
65 GTGCCACCAACTCATGTGGGCTTTGACATTCTAAGGCTTAACCTCCTTAGAT-AGGTGCCAACTA
* *
3173389 ATTTGGACTTCACTCGAACGT
129 ATGTGGACTTGACTCGAACGT
* * *
3173410 TGGTGCCACCAACTCATGTGGGCTTTGACTCGAGTGCC-GCCAACTTGTAG-GAGCTTTGACTAG
1 AGGTGCCACCAACTCGTGTGGGCTTTGACTCG-GTGCCTGCCAACTTGT-GCGGGCTTTGACTAG
* * * ** **
3173473 GGTGCCACCAACTCATGTGGGCTTCGACATTCTAAGCCTTAACCTCTTTAGACCGCAGCCAACTA
64 GGTGCCACCAACTCATGTGGGCTTTGACATTCTAAGGCTTAACCTCCTTAGATAGGTGCCAACTA
* * * * *
3173538 ATCTAGACTTTACTAGAACTT
129 ATGTGGACTTGACTCGAACGT
* * *
3173559 AGGTGCCACCAACTCGTGTGCGCTTTGACTCTGGTGCC-GCAAACTTGTGCAGGCTTTGACTAGG
1 AGGTGCCACCAACTCGTGTGGGCTTTGACTC-GGTGCCTGCCAACTTGTGCGGGCTTTGACTAGG
* * * * * ** * * *
3173623 ATGTCGCCAACTCGTGTGAGCTTTGACATTCTAAGTTTTAACCTCCTTAGATAGCTCCCAGCTAA
65 GTGCCACCAACTCATGTGGGCTTTGACATTCTAAGGCTTAACCTCCTTAGATAGGTGCCAACTAA
* **
3173688 TGTGGACTTGAGTCGAAATT
130 TGTGGACTTGACTCGAACGT
* * *
3173708 AGGTGCTACCAACTCGTGTGGGTTTTGACTCGAGTG-CTGTCTACAACTTGTGTGGGCTTTGACT
1 AGGTGCCACCAACTCGTGTGGGCTTTGACTCG-GTGCCTG-C--CAACTTGTGCGGGCTTTGACT
* ** * * *
3173772 AGGGTGCCACCAACTCATGTGGGCTTTAACATTCTAAGGCTTGGCATCCTCAAATAGGTGCCAAC
62 AGGGTGCCACCAACTCATGTGGGCTTTGACATTCTAAGGCTTAACCTCCTTAGATAGGTGCCAAC
* * *
3173837 TAATTTGGACTTGACTTGAATGT
127 TAATGTGGACTTGACTCGAACGT
* * * * * *
3173860 AAGTGCCACCAATTC-TGCGGGCTTTGACTCGGGTGCC-GCCAACTTGAGCGAGCTTTGACTAAG
1 AGGTGCCACCAACTCGTGTGGGCTTTGACTC-GGTGCCTGCCAACTTGTGCGGGCTTTGACTAGG
* * ** *
3173923 GTGCCACCAACTCATGTGGGCTTTGACATTCGAAAGCTTAATGTCCTTAGATAGGTGCCAACTAT
65 GTGCCACCAACTCATGTGGGCTTTGACATTCTAAGGCTTAACCTCCTTAGATAGGTGCCAACTAA
*
3173988 TGTGGACCTGACTCGAACGT
130 TGTGGACTTGACTCGAACGT
* *
3174008 AGGTGCCACCAACTCGTGTAGGCTTTGACTCGGGTG-CTGCCAACTTGTGTGGGCTTTGACTAGG
1 AGGTGCCACCAACTCGTGTGGGCTTTGACTC-GGTGCCTGCCAACTTGTGCGGGCTTTGACTAGG
* ** * * * * **
3174072 GTGCTACCAACTTGTGTGGGCTTTAACATTCTAAGGCTTGACCTTCTTAAACCGGTGCCAACTAA
65 GTGCCACCAACTCATGTGGGCTTTGACATTCTAAGGCTTAACCTCCTTAGATAGGTGCCAACTAA
*
3174137 TTTGGACTTGACTCGAACGT
130 TGTGGACTTGACTCGAACGT
* * * * * * *
3174157 TGGTGCCACCAACTCATGTGGGCATTGACTCAGGTG-CTACCAAGTTGTGCGAGCTTTGACTAAG
1 AGGTGCCACCAACTCGTGTGGGCTTTGACTC-GGTGCCTGCCAACTTGTGCGGGCTTTGACTAGG
* * * * *
3174221 GTGCCACCAACTCATGTGGGATTTGACATTCTAGGGCTTAACCTCCTTAAACAGCTGCCAACTAA
65 GTGCCACCAACTCATGTGGGCTTTGACATTCTAAGGCTTAACCTCCTTAGATAGGTGCCAACTAA
* ** *
3174286 TGTGCACTTGACTTAAACTT
130 TGTGGACTTGACTCGAACGT
* * * * * * *
3174306 AGGTGCCACCAACTCTTGTGGGCTTTGACTCTAGTG-CTGCTAACTTGTGCGAGCTATAATTAGG
1 AGGTGCCACCAACTCGTGTGGGCTTTGACTC-GGTGCCTGCCAACTTGTGCGGGCTTTGACTAGG
* * * * *
3174370 GTGCCACCAACTCATTTGGGCTTTGATATTCTAAGGCTTATCCTCCTTTGATAGGTGGCAACTAA
65 GTGCCACCAACTCATGTGGGCTTTGACATTCTAAGGCTTAACCTCCTTAGATAGGTGCCAACTAA
* * *
3174435 TGCGGACTTGACTCAAACTT
130 TGTGGACTTGACTCGAACGT
* * * * * *
3174455 ACGTGCCACCAACTCCTGTGGGCTTTGACTCGG-GTACTGCAAACATGTGTGGGCTTTGACTTA-
1 AGGTGCCACCAACTCGTGTGGGCTTTGACTCGGTG-CCTGCCAACTTGTGCGGGCTTTGAC-TAG
* * * ** * * * *
3174518 GGTGCCACCAACTCGTGTGGGCTTTAACATTCTAGGGCTTGCCCTCCGTAGACAAGTGCCAAGTA
64 GGTGCCACCAACTCATGTGGGCTTTGACATTCTAAGGCTTAACCTCCTTAGATAGGTGCCAACTA
* *
3174583 ATTTGGACTTGACTCAAACGT
129 ATGTGGACTTGACTCGAACGT
* * * * * *
3174604 AGGTGCCACCAACTCATGTGGGCTTTGACTTAGGTGTC-ACCAACTTGTGCGGGTTTTGACTAGA
1 AGGTGCCACCAACTCGTGTGGGCTTTGAC-TCGGTGCCTGCCAACTTGTGCGGGCTTTGACTAGG
** * * * * * *
3174668 GTGCCACCAACTTGTGTGGGCTTTGACGTTCGATGGGTTAACCTCCTTAAATAGGAGCCAACTAA
65 GTGCCACCAACTCATGTGGGCTTTGACATTCTAAGGCTTAACCTCCTTAGATAGGTGCCAACTAA
* * *
3174733 TGCGGGCTTGACTCAAACGT
130 TGTGGACTTGACTCGAACGT
* * **
3174753 AGGTACTACCAACTCAAGTGGGCTTTGA
1 AGGTGCCACCAACTCGTGTGGGCTTTGA
3174781 TTTAGGTGCC
Statistics
Matches: 8018, Mismatches: 1660, Indels: 394
0.80 0.16 0.04
Matches are distributed among these distances:
146 2 0.00
147 12 0.00
148 920 0.11
149 6151 0.77
150 102 0.01
151 130 0.02
152 701 0.09
ACGTcount: A:0.23, C:0.24, G:0.24, T:0.29
Consensus pattern (149 bp):
AGGTGCCACCAACTCGTGTGGGCTTTGACTCGGTGCCTGCCAACTTGTGCGGGCTTTGACTAGGG
TGCCACCAACTCATGTGGGCTTTGACATTCTAAGGCTTAACCTCCTTAGATAGGTGCCAACTAAT
GTGGACTTGACTCGAACGT
Found at i:3177363 original size:97 final size:97
Alignment explanation
Indices: 3177244--3177476 Score: 376
Period size: 97 Copynumber: 2.4 Consensus size: 97
3177234 TATCGGGGCT
* ** *
3177244 AACCCTATTCCTCCGAAAGGATACTCTAACCCCGCTTTTAAACACATCAAAGTTTAAATATTATT
1 AACCCAATTCCTCCGAGGGGATACTCCAACCCCGCTTTTAAACACATCAAAGTTTAAATATTATT
*
3177309 CTCACTTAAATTGTCATCATCGGGGACACTCC
66 CTCACTCAAATTGTCATCATCGGGGACACTCC
* * *
3177341 AACCCCATTCCTCCGAGGGGATACTCCAACCCTGCTTTTAAACACATCAAAGTTTAAATCTTATT
1 AACCCAATTCCTCCGAGGGGATACTCCAACCCCGCTTTTAAACACATCAAAGTTTAAATATTATT
3177406 CTCACTCAAATTGTCATCATCGGGGACACTCC
66 CTCACTCAAATTGTCATCATCGGGGACACTCC
* *
3177438 AACCTAATTCCTCCGAGGGGATACTCCAACCCCGTTTTT
1 AACCCAATTCCTCCGAGGGGATACTCCAACCCCGCTTTT
3177477 CAATCAAAAA
Statistics
Matches: 125, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
97 125 1.00
ACGTcount: A:0.29, C:0.30, G:0.12, T:0.29
Consensus pattern (97 bp):
AACCCAATTCCTCCGAGGGGATACTCCAACCCCGCTTTTAAACACATCAAAGTTTAAATATTATT
CTCACTCAAATTGTCATCATCGGGGACACTCC
Found at i:3182312 original size:52 final size:52
Alignment explanation
Indices: 3182223--3182403 Score: 326
Period size: 52 Copynumber: 3.5 Consensus size: 52
3182213 CGAAATATGA
* * *
3182223 AAATTTGCCTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGAGC
1 AAATTTGCCTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGC
*
3182275 AAATATGCCTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGC
3182327 AAATTTGCCTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGC
3182379 AAATTTGCCTGCATGTATCGATACA
1 AAATTTGCCTGCATGTATCGATACA
3182404 AAGATCAGTG
Statistics
Matches: 124, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 124 1.00
ACGTcount: A:0.30, C:0.18, G:0.17, T:0.35
Consensus pattern (52 bp):
AAATTTGCCTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGC
Found at i:3182430 original size:13 final size:13
Alignment explanation
Indices: 3182412--3182436 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3182402 CAAAGATCAG
3182412 TGTATCGATACAA
1 TGTATCGATACAA
3182425 TGTATCGATACA
1 TGTATCGATACA
3182437 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:3182517 original size:13 final size:13
Alignment explanation
Indices: 3182499--3182523 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3182489 CAAAAAAACA
3182499 TGTATCGATACAT
1 TGTATCGATACAT
3182512 TGTATCGATACA
1 TGTATCGATACA
3182524 ATACTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:3183422 original size:52 final size:52
Alignment explanation
Indices: 3183354--3183600 Score: 289
Period size: 52 Copynumber: 4.9 Consensus size: 52
3183344 GTTAAAGATG
* *
3183354 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGACA
1 AAGGCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGACA
* * * * * *
3183406 AAGACACCAATATGCTGATCCAAAGCCAGCGATATAGGACTTAAGGATGACA
1 AAGGCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGACA
3183458 AAGGCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT---G--G---
1 AAGGCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGACA
* * * * *
3183502 -AGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGGT-ACCA
1 AAGGCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGA-CA
3183553 AAGGCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAGAAGA
1 AAGGCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTA-AAGA
3183601 AGACGCCACC
Statistics
Matches: 162, Mismatches: 22, Indels: 21
0.79 0.11 0.10
Matches are distributed among these distances:
43 37 0.23
46 1 0.01
47 1 0.01
49 1 0.01
52 119 0.73
53 3 0.02
ACGTcount: A:0.33, C:0.20, G:0.26, T:0.21
Consensus pattern (52 bp):
AAGGCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGACA
Found at i:3183524 original size:43 final size:45
Alignment explanation
Indices: 3183458--3183596 Score: 165
Period size: 43 Copynumber: 3.0 Consensus size: 45
3183448 AAGGATGACA
3183458 AAGGCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT-GG
1 AAGGCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAGG
* * * *
3183502 -AGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGG
1 AAGGCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT--AGG
3183548 TACCAAAGGCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAG
1 -----AAGGCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAG
3183597 AAGAAGACGC
Statistics
Matches: 78, Mismatches: 8, Indels: 12
0.80 0.08 0.12
Matches are distributed among these distances:
43 37 0.47
46 2 0.03
50 2 0.03
52 37 0.47
ACGTcount: A:0.29, C:0.21, G:0.27, T:0.23
Consensus pattern (45 bp):
AAGGCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAGG
Found at i:3183575 original size:95 final size:95
Alignment explanation
Indices: 3183412--3183594 Score: 280
Period size: 95 Copynumber: 1.9 Consensus size: 95
3183402 GACAAAGACA
*
3183412 CCAATATGCTGATCCAAAGCCAGCGATATAGGACTTAAGGATGACAAAGGCGCCAATATGCTGAT
1 CCAATATGCTGATCCAAAGCCAGCGACATAGGACTTAAGGATGACAAAGGCGCCAATATGCTGAT
3183477 TCAAGGCCAGCGATATTGGACTTGGAGGTG
66 TCAAGGCCAGCGATATTGGACTTGGAGGTG
* * * * *
3183507 CCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGG-T-ACCAAAGGCGCCAATATGCTG
1 CCAATATGCTGATCCAAAGCCAGCGACATAGGACTT-AAGGATGA-CAAAGGCGCCAATATGCTG
3183570 ATTCAAGGCCAGCGATATTGGACTT
64 ATTCAAGGCCAGCGATATTGGACTT
3183595 AGAAGAAGAC
Statistics
Matches: 80, Mismatches: 6, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
94 1 0.01
95 75 0.94
96 4 0.05
ACGTcount: A:0.31, C:0.21, G:0.26, T:0.22
Consensus pattern (95 bp):
CCAATATGCTGATCCAAAGCCAGCGACATAGGACTTAAGGATGACAAAGGCGCCAATATGCTGAT
TCAAGGCCAGCGATATTGGACTTGGAGGTG
Found at i:3183673 original size:28 final size:28
Alignment explanation
Indices: 3183617--3184733 Score: 246
Period size: 28 Copynumber: 37.3 Consensus size: 28
3183607 CACCAACTTG
3183617 TGTGGGCTTTTAAAAGGTTTG-CA-TCAACT
1 TGTGGGCTTTT-AAAGG-TTGCCACT-AACT
* *
3183646 TGTGTGCTTTTGAAGGTTGCCACTAACT
1 TGTGGGCTTTTAAAGGTTGCCACTAACT
* *
3183674 TGTGGGCTTTTAAAGATTGCCACTGACT
1 TGTGGGCTTTTAAAGGTTGCCACTAACT
3183702 TGTGGGCTTTTAAAGGTTGCCACTAACT
1 TGTGGGCTTTTAAAGGTTGCCACTAACT
* *
3183730 TGTGGGCTTTTGAAAAGGGTGCCATTAACT
1 TGTGGGCTTTT--AAAGGTTGCCACTAACT
* * * ** *
3183760 TGTGGGC-TTAAAAGGAAAAAGAGTGCTACGGAGT
1 TGTGGGCTTTTAAA-G-----G-TTGCCACTAACT
* ** * * *
3183794 TGTGAGCTTACAAAAGAAAAAGAGTGCCA-TGGAGT
1 TGTGGGCTT-TTAAAG-----G-TTGCCACT-AACT
* * * * **
3183829 TGTGGACTTTGGAAAAGATGCCACCGACT
1 TGTGGGCTTT-TAAAGGTTGCCACTAACT
* ** * * *
3183858 TGTAGGCTTCGGAAAAGGGTGCCACTGATT
1 TGTGGGCTT--TTAAAGGTTGCCACTAACT
* *
3183888 TGTGGGC-TTTGAAGGTTGCCACTGACT
1 TGTGGGCTTTTAAAGGTTGCCACTAACT
* *
3183915 TGTGGGCTTTTAAAGATTGCCACTGACT
1 TGTGGGCTTTTAAAGGTTGCCACTAACT
*
3183943 TGTGGGCTTTTAAAGGTTGCCACTGACT
1 TGTGGGCTTTTAAAGGTTGCCACTAACT
*
3183971 TGTGGGCTTTTGAAAAGGGTGCCACTAACT
1 TGTGGGCTTTT--AAAGGTTGCCACTAACT
** * ** *
3184001 TGTGGGCTTAAGAGGAAAAAGAG-TGCTACGGAGT
1 TGTGGGCTT------TTAAAG-GTTGCCACTAACT
* ** * * * *
3184035 TGTGAGCTTACAAAAGAAAAAGAGTGCC-TTGGAGT
1 TGTGGGCTT-TTAAAG-----G-TTGCCACT-AACT
* * * * * **
3184070 TATGGACTTTGGAAAAGATGCCACCGACT
1 TGTGGGCTTT-TAAAGGTTGCCACTAACT
** * * *
3184099 TGTGGGCTTCGGAAAAGGGTGCCACTGATT
1 TGTGGGCTT--TTAAAGGTTGCCACTAACT
*
3184129 TGTGGGC-TTTGAAGGTTGCCACTAACT
1 TGTGGGCTTTTAAAGGTTGCCACTAACT
* *
3184156 TGTGGGCTTTTAAAGATTGCCACTGACT
1 TGTGGGCTTTTAAAGGTTGCCACTAACT
*
3184184 TGTGGGCTTTTAAAGGTTGCCACTGACT
1 TGTGGGCTTTTAAAGGTTGCCACTAACT
*
3184212 TGTGGGCTTTTGAAAAGGGTGCCACTAACT
1 TGTGGGCTTTT--AAAGGTTGCCACTAACT
** * ** *
3184242 TGTGGGCTTAAGAGGAAAAAGAG-TGCTACGGAGT
1 TGTGGGCTT------TTAAAG-GTTGCCACTAACT
* ** * * * *
3184276 TGTGAGCTTACAAAAGAAAAAGAGTGCC-TTGGAGT
1 TGTGGGCTT-TTAAAG-----G-TTGCCACT-AACT
* * * * * **
3184311 TATGGACTTTGGAAAAGATGCCACCGACT
1 TGTGGGCTTT-TAAAGGTTGCCACTAACT
** * * *
3184340 TGTGGGCTTCGGAAAAGGGTGCCACTGATT
1 TGTGGGCTT--TTAAAGGTTGCCACTAACT
*
3184370 TGTAGGGC-TTTGAAGGTTGCCACTAACT
1 TGT-GGGCTTTTAAAGGTTGCCACTAACT
* *
3184398 TGTGGGCTTTTAAAGATTGCCACTGACT
1 TGTGGGCTTTTAAAGGTTGCCACTAACT
*
3184426 TGTGGGCTTTTAAAGGTTGCCACTGACT
1 TGTGGGCTTTTAAAGGTTGCCACTAACT
*
3184454 TGTGGGCTTTTGAAAAGGGTGCCACTAACT
1 TGTGGGCTTTT--AAAGGTTGCCACTAACT
** * ** *
3184484 TGTGGGCTTAAGAGGAAAAAGAG-TGCTACGGAGT
1 TGTGGGCTT------TTAAAG-GTTGCCACTAACT
* ** * * *
3184518 TGTGAGCTTACAAAAGAAAAAGAGTGCCA-TGGAGT
1 TGTGGGCTT-TTAAAG-----G-TTGCCACT-AACT
* * * * **
3184553 TGTGGACTTTGGAAAAGATGCCACCGACT
1 TGTGGGCTTT-TAAAGGTTGCCACTAACT
** * * *
3184582 TGTGGGCTTCGGAAAAGGGTGCCACTGATT
1 TGTGGGCTT--TTAAAGGTTGCCACTAACT
*
3184612 TGTGGGC-TTTGAAGGTTGCCACTAACT
1 TGTGGGCTTTTAAAGGTTGCCACTAACT
* *
3184639 TGTGGGCTTTTAAAGATTGCCACTGACT
1 TGTGGGCTTTTAAAGGTTGCCACTAACT
*
3184667 TGTGGGCTTTTAAAGGTTGCCACTGACT
1 TGTGGGCTTTTAAAGGTTGCCACTAACT
*
3184695 TGTGGGCTTTTGAAAAGGGTGCCACTAACT
1 TGTGGGCTTTT--AAAGGTTGCCACTAACT
3184725 TGTGGGCTT
1 TGTGGGCTT
3184734 AAGAGGAAAA
Statistics
Matches: 834, Mismatches: 169, Indels: 169
0.71 0.14 0.14
Matches are distributed among these distances:
27 71 0.09
28 309 0.37
29 90 0.11
30 198 0.24
31 4 0.00
33 7 0.01
34 70 0.08
35 81 0.10
36 4 0.00
ACGTcount: A:0.25, C:0.16, G:0.30, T:0.29
Consensus pattern (28 bp):
TGTGGGCTTTTAAAGGTTGCCACTAACT
Found at i:3183797 original size:34 final size:35
Alignment explanation
Indices: 3183759--3183833 Score: 107
Period size: 35 Copynumber: 2.2 Consensus size: 35
3183749 TGCCATTAAC
* *
3183759 TTGTGGGCTTA-AAAGGAAAAAGAGTGCTACGGAG
1 TTGTGGGCTTACAAAAGAAAAAGAGTGCCACGGAG
* *
3183793 TTGTGAGCTTACAAAAGAAAAAGAGTGCCATGGAG
1 TTGTGGGCTTACAAAAGAAAAAGAGTGCCACGGAG
3183828 TTGTGG
1 TTGTGG
3183834 ACTTTGGAAA
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
34 10 0.29
35 25 0.71
ACGTcount: A:0.35, C:0.09, G:0.33, T:0.23
Consensus pattern (35 bp):
TTGTGGGCTTACAAAAGAAAAAGAGTGCCACGGAG
Found at i:3183910 original size:27 final size:28
Alignment explanation
Indices: 3183871--3184985 Score: 368
Period size: 28 Copynumber: 37.2 Consensus size: 28
3183861 AGGCTTCGGA
* *
3183871 AAAGGGTGCCACTGATTTGTGGGC-TTT
1 AAAGGTTGCCACTGACTTGTGGGCTTTT
*
3183898 GAAGGTTGCCACTGACTTGTGGGCTTTT
1 AAAGGTTGCCACTGACTTGTGGGCTTTT
*
3183926 AAAGATTGCCACTGACTTGTGGGCTTTT
1 AAAGGTTGCCACTGACTTGTGGGCTTTT
3183954 AAAGGTTGCCACTGACTTGTGGGCTTTT
1 AAAGGTTGCCACTGACTTGTGGGCTTTT
* * **
3183982 GAAAAGGGTGCCACTAACTTGTGGGCTTAAGAGGAA
1 --AAAGGTTGCCACTGACTTGTGGGCTT------TT
* * * * **
3184018 AAAGAG-TGCTACGGAGTTGTGAGCTTACA
1 AAAG-GTTGCCACTGACTTGTGGGCTT-TT
* * * * * *
3184047 AAAGAAAAAGAGTGCC-TTGGAGTTATGGACTTTGG
1 AAAG-----G-TTGCCACT-GACTTGTGGGCTTT-T
* * * **
3184082 AAAAGATGCCACCGACTTGTGGGCTTCGGA
1 AAAGGTTGCCACTGACTTGTGGGCTT--TT
* *
3184112 AAAGGGTGCCACTGATTTGTGGGC-TTT
1 AAAGGTTGCCACTGACTTGTGGGCTTTT
* *
3184139 GAAGGTTGCCACTAACTTGTGGGCTTTT
1 AAAGGTTGCCACTGACTTGTGGGCTTTT
*
3184167 AAAGATTGCCACTGACTTGTGGGCTTTT
1 AAAGGTTGCCACTGACTTGTGGGCTTTT
3184195 AAAGGTTGCCACTGACTTGTGGGCTTTT
1 AAAGGTTGCCACTGACTTGTGGGCTTTT
* * **
3184223 GAAAAGGGTGCCACTAACTTGTGGGCTTAAGAGGAA
1 --AAAGGTTGCCACTGACTTGTGGGCTT------TT
* * * * **
3184259 AAAGAG-TGCTACGGAGTTGTGAGCTTACA
1 AAAG-GTTGCCACTGACTTGTGGGCTT-TT
* * * * * *
3184288 AAAGAAAAAGAGTGCC-TTGGAGTTATGGACTTTGG
1 AAAG-----G-TTGCCACT-GACTTGTGGGCTTT-T
* * * **
3184323 AAAAGATGCCACCGACTTGTGGGCTTCGGA
1 AAAGGTTGCCACTGACTTGTGGGCTT--TT
* *
3184353 AAAGGGTGCCACTGATTTGTAGGGC-TTT
1 AAAGGTTGCCACTGACTTGT-GGGCTTTT
* *
3184381 GAAGGTTGCCACTAACTTGTGGGCTTTT
1 AAAGGTTGCCACTGACTTGTGGGCTTTT
*
3184409 AAAGATTGCCACTGACTTGTGGGCTTTT
1 AAAGGTTGCCACTGACTTGTGGGCTTTT
3184437 AAAGGTTGCCACTGACTTGTGGGCTTTT
1 AAAGGTTGCCACTGACTTGTGGGCTTTT
* * **
3184465 GAAAAGGGTGCCACTAACTTGTGGGCTTAAGAGGAA
1 --AAAGGTTGCCACTGACTTGTGGGCTT------TT
* * * * **
3184501 AAAGAG-TGCTACGGAGTTGTGAGCTTACA
1 AAAG-GTTGCCACTGACTTGTGGGCTT-TT
* * * *
3184530 AAAGAAAAAGAGTGCCA-TGGAGTTGTGGACTTTGG
1 AAAG-----G-TTGCCACT-GACTTGTGGGCTTT-T
* * * **
3184565 AAAAGATGCCACCGACTTGTGGGCTTCGGA
1 AAAGGTTGCCACTGACTTGTGGGCTT--TT
* *
3184595 AAAGGGTGCCACTGATTTGTGGGC-TTT
1 AAAGGTTGCCACTGACTTGTGGGCTTTT
* *
3184622 GAAGGTTGCCACTAACTTGTGGGCTTTT
1 AAAGGTTGCCACTGACTTGTGGGCTTTT
*
3184650 AAAGATTGCCACTGACTTGTGGGCTTTT
1 AAAGGTTGCCACTGACTTGTGGGCTTTT
3184678 AAAGGTTGCCACTGACTTGTGGGCTTTT
1 AAAGGTTGCCACTGACTTGTGGGCTTTT
* * **
3184706 GAAAAGGGTGCCACTAACTTGTGGGCTTAAGAGGAA
1 --AAAGGTTGCCACTGACTTGTGGGCTT------TT
* * * * **
3184742 AAAGAG-TGCTACGGAGTTGTGAGCTTACA
1 AAAG-GTTGCCACTGACTTGTGGGCTT-TT
* * * *
3184771 AAAGAAAAAGAGTGCCA-TGGAGTTGTGGACTTTGG
1 AAAG-----G-TTGCCACT-GACTTGTGGGCTTT-T
* * * **
3184806 AAAAGATGCCACCGACTTGTGGGCTTCGGAA
1 AAAGGTTGCCACTGACTTGTGGGCTT---TT
*
3184837 AAAGG-TGCCACTGATTTGTGGGC-TTT
1 AAAGGTTGCCACTGACTTGTGGGCTTTT
3184863 AAAGGTTGCCACTGACTTGTGGGCTTTT
1 AAAGGTTGCCACTGACTTGTGGGCTTTT
* *
3184891 GAAAAGGGTGCCACTAACTTGTGGGCTTTT
1 --AAAGGTTGCCACTGACTTGTGGGCTTTT
* * *
3184921 GAAAAAAGATGCCACTGACTTGTGGGCTTTGA
1 ---AAAGGTTGCCACTGACTTGTGGGCTTT-T
* *
3184953 AAAAGATGCCACTGACTTGTGGGCTTTT
1 AAAGGTTGCCACTGACTTGTGGGCTTTT
*
3184981 GAAGG
1 AAAGG
3184986 GTGAGGAATG
Statistics
Matches: 828, Mismatches: 168, Indels: 183
0.70 0.14 0.16
Matches are distributed among these distances:
26 5 0.01
27 82 0.10
28 243 0.29
29 110 0.13
30 199 0.24
31 33 0.04
33 8 0.01
34 76 0.09
35 72 0.09
ACGTcount: A:0.26, C:0.16, G:0.30, T:0.28
Consensus pattern (28 bp):
AAAGGTTGCCACTGACTTGTGGGCTTTT
Found at i:3184078 original size:241 final size:241
Alignment explanation
Indices: 3183645--3184978 Score: 2409
Period size: 241 Copynumber: 5.5 Consensus size: 241
3183635 TTGCATCAAC
*
3183645 TTGTGTGCTTTTGAAGGTTGCCACTAACTTGTGGGCTTTTAAAGATTGCCACTGACTTGTGGGCT
1 TTGTGGGC-TTTGAAGGTTGCCACTAACTTGTGGGCTTTTAAAGATTGCCACTGACTTGTGGGCT
* * *
3183710 TTTAAAGGTTGCCACTAACTTGTGGGCTTTTGAAAAGGGTGCCATTAACTTGTGGGCTTAAAAGG
65 TTTAAAGGTTGCCACTGACTTGTGGGCTTTTGAAAAGGGTGCCACTAACTTGTGGGCTTAAGAGG
3183775 AAAAAGAGTGCTACGGAGTTGTGAGCTTACAAAAGAAAAAGAGTGCCATGGAGTTGTGGACTTTG
130 AAAAAGAGTGCTACGGAGTTGTGAGCTTACAAAAGAAAAAGAGTGCCATGGAGTTGTGGACTTTG
*
3183840 GAAAAGATGCCACCGACTTGTAGGCTTCGGAAAAGGGTGCCACTGAT
195 GAAAAGATGCCACCGACTTGTGGGCTTCGGAAAAGGGTGCCACTGAT
*
3183887 TTGTGGGCTTTGAAGGTTGCCACTGACTTGTGGGCTTTTAAAGATTGCCACTGACTTGTGGGCTT
1 TTGTGGGCTTTGAAGGTTGCCACTAACTTGTGGGCTTTTAAAGATTGCCACTGACTTGTGGGCTT
3183952 TTAAAGGTTGCCACTGACTTGTGGGCTTTTGAAAAGGGTGCCACTAACTTGTGGGCTTAAGAGGA
66 TTAAAGGTTGCCACTGACTTGTGGGCTTTTGAAAAGGGTGCCACTAACTTGTGGGCTTAAGAGGA
* *
3184017 AAAAGAGTGCTACGGAGTTGTGAGCTTACAAAAGAAAAAGAGTGCCTTGGAGTTATGGACTTTGG
131 AAAAGAGTGCTACGGAGTTGTGAGCTTACAAAAGAAAAAGAGTGCCATGGAGTTGTGGACTTTGG
3184082 AAAAGATGCCACCGACTTGTGGGCTTCGGAAAAGGGTGCCACTGAT
196 AAAAGATGCCACCGACTTGTGGGCTTCGGAAAAGGGTGCCACTGAT
3184128 TTGTGGGCTTTGAAGGTTGCCACTAACTTGTGGGCTTTTAAAGATTGCCACTGACTTGTGGGCTT
1 TTGTGGGCTTTGAAGGTTGCCACTAACTTGTGGGCTTTTAAAGATTGCCACTGACTTGTGGGCTT
3184193 TTAAAGGTTGCCACTGACTTGTGGGCTTTTGAAAAGGGTGCCACTAACTTGTGGGCTTAAGAGGA
66 TTAAAGGTTGCCACTGACTTGTGGGCTTTTGAAAAGGGTGCCACTAACTTGTGGGCTTAAGAGGA
* *
3184258 AAAAGAGTGCTACGGAGTTGTGAGCTTACAAAAGAAAAAGAGTGCCTTGGAGTTATGGACTTTGG
131 AAAAGAGTGCTACGGAGTTGTGAGCTTACAAAAGAAAAAGAGTGCCATGGAGTTGTGGACTTTGG
3184323 AAAAGATGCCACCGACTTGTGGGCTTCGGAAAAGGGTGCCACTGAT
196 AAAAGATGCCACCGACTTGTGGGCTTCGGAAAAGGGTGCCACTGAT
3184369 TTGTAGGGCTTTGAAGGTTGCCACTAACTTGTGGGCTTTTAAAGATTGCCACTGACTTGTGGGCT
1 TTGT-GGGCTTTGAAGGTTGCCACTAACTTGTGGGCTTTTAAAGATTGCCACTGACTTGTGGGCT
3184434 TTTAAAGGTTGCCACTGACTTGTGGGCTTTTGAAAAGGGTGCCACTAACTTGTGGGCTTAAGAGG
65 TTTAAAGGTTGCCACTGACTTGTGGGCTTTTGAAAAGGGTGCCACTAACTTGTGGGCTTAAGAGG
3184499 AAAAAGAGTGCTACGGAGTTGTGAGCTTACAAAAGAAAAAGAGTGCCATGGAGTTGTGGACTTTG
130 AAAAAGAGTGCTACGGAGTTGTGAGCTTACAAAAGAAAAAGAGTGCCATGGAGTTGTGGACTTTG
3184564 GAAAAGATGCCACCGACTTGTGGGCTTCGGAAAAGGGTGCCACTGAT
195 GAAAAGATGCCACCGACTTGTGGGCTTCGGAAAAGGGTGCCACTGAT
3184611 TTGTGGGCTTTGAAGGTTGCCACTAACTTGTGGGCTTTTAAAGATTGCCACTGACTTGTGGGCTT
1 TTGTGGGCTTTGAAGGTTGCCACTAACTTGTGGGCTTTTAAAGATTGCCACTGACTTGTGGGCTT
3184676 TTAAAGGTTGCCACTGACTTGTGGGCTTTTGAAAAGGGTGCCACTAACTTGTGGGCTTAAGAGGA
66 TTAAAGGTTGCCACTGACTTGTGGGCTTTTGAAAAGGGTGCCACTAACTTGTGGGCTTAAGAGGA
3184741 AAAAGAGTGCTACGGAGTTGTGAGCTTACAAAAGAAAAAGAGTGCCATGGAGTTGTGGACTTTGG
131 AAAAGAGTGCTACGGAGTTGTGAGCTTACAAAAGAAAAAGAGTGCCATGGAGTTGTGGACTTTGG
*
3184806 AAAAGATGCCACCGACTTGTGGGCTTCGGAAAAAGGTGCCACTGAT
196 AAAAGATGCCACCGACTTGTGGGCTTCGGAAAAGGGTGCCACTGAT
* * ** *
3184852 TTGTGGGCTTTAAAGGTTGCCACTGACTTGTGGGCTTTTGAAAAGGGTGCCACTAACTTGTGGGC
1 TTGTGGGCTTTGAAGGTTGCCACTAACTTGTGGGCTTTT--AAAGATTGCCACTGACTTGTGGGC
* * * * *
3184917 TTTTGAAAAAAGATGCCACTGACTTGTGGGC-TTTGAAAAAGATGCCACTGACTTGTGGGCTT
64 TTTT---AAAGGTTGCCACTGACTTGTGGGCTTTTGAAAAGGGTGCCACTAACTTGTGGGCTT
3184979 TTGAAGGGTG
Statistics
Matches: 1064, Mismatches: 22, Indels: 9
0.97 0.02 0.01
Matches are distributed among these distances:
241 743 0.70
242 246 0.23
243 25 0.02
245 28 0.03
246 22 0.02
ACGTcount: A:0.26, C:0.16, G:0.30, T:0.28
Consensus pattern (241 bp):
TTGTGGGCTTTGAAGGTTGCCACTAACTTGTGGGCTTTTAAAGATTGCCACTGACTTGTGGGCTT
TTAAAGGTTGCCACTGACTTGTGGGCTTTTGAAAAGGGTGCCACTAACTTGTGGGCTTAAGAGGA
AAAAGAGTGCTACGGAGTTGTGAGCTTACAAAAGAAAAAGAGTGCCATGGAGTTGTGGACTTTGG
AAAAGATGCCACCGACTTGTGGGCTTCGGAAAAGGGTGCCACTGAT
Found at i:3184521 original size:34 final size:35
Alignment explanation
Indices: 3184483--3184557 Score: 98
Period size: 35 Copynumber: 2.2 Consensus size: 35
3184473 TGCCACTAAC
* * *
3184483 TTGTGGGCTTA-AGAGGAAAAAGAGTGCTACGGAG
1 TTGTGGGCTTACAAAAGAAAAAGAGTGCCACGGAG
* *
3184517 TTGTGAGCTTACAAAAGAAAAAGAGTGCCATGGAG
1 TTGTGGGCTTACAAAAGAAAAAGAGTGCCACGGAG
3184552 TTGTGG
1 TTGTGG
3184558 ACTTTGGAAA
Statistics
Matches: 34, Mismatches: 6, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
34 10 0.29
35 24 0.71
ACGTcount: A:0.33, C:0.09, G:0.35, T:0.23
Consensus pattern (35 bp):
TTGTGGGCTTACAAAAGAAAAAGAGTGCCACGGAG
Found at i:3184607 original size:483 final size:482
Alignment explanation
Indices: 3183645--3184978 Score: 2418
Period size: 483 Copynumber: 2.8 Consensus size: 482
3183635 TTGCATCAAC
*
3183645 TTGTGTGCTTTTGAAGGTTGCCACTAACTTGTGGGCTTTTAAAGATTGCCACTGACTTGTGGGCT
1 TTGTGGGC-TTTGAAGGTTGCCACTAACTTGTGGGCTTTTAAAGATTGCCACTGACTTGTGGGCT
* * *
3183710 TTTAAAGGTTGCCACTAACTTGTGGGCTTTTGAAAAGGGTGCCATTAACTTGTGGGCTTAAAAGG
65 TTTAAAGGTTGCCACTGACTTGTGGGCTTTTGAAAAGGGTGCCACTAACTTGTGGGCTTAAGAGG
3183775 AAAAAGAGTGCTACGGAGTTGTGAGCTTACAAAAGAAAAAGAGTGCCATGGAGTTGTGGACTTTG
130 AAAAAGAGTGCTACGGAGTTGTGAGCTTACAAAAGAAAAAGAGTGCCATGGAGTTGTGGACTTTG
*
3183840 GAAAAGATGCCACCGACTTGTAGGCTTCGGAAAAGGGTGCCACTGATTTGTGGGCTTTGAAGGTT
195 GAAAAGATGCCACCGACTTGTGGGCTTCGGAAAAGGGTGCCACTGATTTGTGGGCTTTGAAGGTT
3183905 GCCACTGACTTGTGGGCTTTTAAAGATTGCCACTGACTTGTGGGCTTTTAAAGGTTGCCACTGAC
260 GCCACTGACTTGTGGGCTTTTAAAGATTGCCACTGACTTGTGGGCTTTTAAAGGTTGCCACTGAC
3183970 TTGTGGGCTTTTGAAAAGGGTGCCACTAACTTGTGGGCTTAAGAGGAAAAAGAGTGCTACGGAGT
325 TTGTGGGCTTTTGAAAAGGGTGCCACTAACTTGTGGGCTTAAGAGGAAAAAGAGTGCTACGGAGT
*
3184035 TGTGAGCTTACAAAAGAAAAAGAGTGCCTTGGAGTTATGGACTTTGGAAAAGATGCCACCGACTT
390 TGTGAGCTTACAAAAGAAAAAGAGTGCCATGGAGTTATGGACTTTGGAAAAGATGCCACCGACTT
3184100 GTGGGCTTCGGAAAAGGGTGCCACTGAT
455 GTGGGCTTCGGAAAAGGGTGCCACTGAT
3184128 TTGTGGGCTTTGAAGGTTGCCACTAACTTGTGGGCTTTTAAAGATTGCCACTGACTTGTGGGCTT
1 TTGTGGGCTTTGAAGGTTGCCACTAACTTGTGGGCTTTTAAAGATTGCCACTGACTTGTGGGCTT
3184193 TTAAAGGTTGCCACTGACTTGTGGGCTTTTGAAAAGGGTGCCACTAACTTGTGGGCTTAAGAGGA
66 TTAAAGGTTGCCACTGACTTGTGGGCTTTTGAAAAGGGTGCCACTAACTTGTGGGCTTAAGAGGA
* *
3184258 AAAAGAGTGCTACGGAGTTGTGAGCTTACAAAAGAAAAAGAGTGCCTTGGAGTTATGGACTTTGG
131 AAAAGAGTGCTACGGAGTTGTGAGCTTACAAAAGAAAAAGAGTGCCATGGAGTTGTGGACTTTGG
3184323 AAAAGATGCCACCGACTTGTGGGCTTCGGAAAAGGGTGCCACTGATTTGTAGGGCTTTGAAGGTT
196 AAAAGATGCCACCGACTTGTGGGCTTCGGAAAAGGGTGCCACTGATTTGT-GGGCTTTGAAGGTT
*
3184388 GCCACTAACTTGTGGGCTTTTAAAGATTGCCACTGACTTGTGGGCTTTTAAAGGTTGCCACTGAC
260 GCCACTGACTTGTGGGCTTTTAAAGATTGCCACTGACTTGTGGGCTTTTAAAGGTTGCCACTGAC
3184453 TTGTGGGCTTTTGAAAAGGGTGCCACTAACTTGTGGGCTTAAGAGGAAAAAGAGTGCTACGGAGT
325 TTGTGGGCTTTTGAAAAGGGTGCCACTAACTTGTGGGCTTAAGAGGAAAAAGAGTGCTACGGAGT
*
3184518 TGTGAGCTTACAAAAGAAAAAGAGTGCCATGGAGTTGTGGACTTTGGAAAAGATGCCACCGACTT
390 TGTGAGCTTACAAAAGAAAAAGAGTGCCATGGAGTTATGGACTTTGGAAAAGATGCCACCGACTT
3184583 GTGGGCTTCGGAAAAGGGTGCCACTGAT
455 GTGGGCTTCGGAAAAGGGTGCCACTGAT
3184611 TTGTGGGCTTTGAAGGTTGCCACTAACTTGTGGGCTTTTAAAGATTGCCACTGACTTGTGGGCTT
1 TTGTGGGCTTTGAAGGTTGCCACTAACTTGTGGGCTTTTAAAGATTGCCACTGACTTGTGGGCTT
3184676 TTAAAGGTTGCCACTGACTTGTGGGCTTTTGAAAAGGGTGCCACTAACTTGTGGGCTTAAGAGGA
66 TTAAAGGTTGCCACTGACTTGTGGGCTTTTGAAAAGGGTGCCACTAACTTGTGGGCTTAAGAGGA
3184741 AAAAGAGTGCTACGGAGTTGTGAGCTTACAAAAGAAAAAGAGTGCCATGGAGTTGTGGACTTTGG
131 AAAAGAGTGCTACGGAGTTGTGAGCTTACAAAAGAAAAAGAGTGCCATGGAGTTGTGGACTTTGG
* *
3184806 AAAAGATGCCACCGACTTGTGGGCTTCGGAAAAAGGTGCCACTGATTTGTGGGCTTTAAAGGTTG
196 AAAAGATGCCACCGACTTGTGGGCTTCGGAAAAGGGTGCCACTGATTTGTGGGCTTTGAAGGTTG
** * * *
3184871 CCACTGACTTGTGGGCTTTTGAAAAGGGTGCCACTAACTTGTGGGCTTTTGAAAAAAGATGCCAC
261 CCACTGACTTGTGGGCTTTT--AAAGATTGCCACTGACTTGTGGGCTTTT---AAAGGTTGCCAC
* * *
3184936 TGACTTGTGGGC-TTTGAAAAAGATGCCACTGACTTGTGGGCTT
321 TGACTTGTGGGCTTTTGAAAAGGGTGCCACTAACTTGTGGGCTT
3184979 TTGAAGGGTG
Statistics
Matches: 822, Mismatches: 23, Indels: 9
0.96 0.03 0.01
Matches are distributed among these distances:
482 264 0.32
483 483 0.59
484 25 0.03
486 28 0.03
487 22 0.03
ACGTcount: A:0.26, C:0.16, G:0.30, T:0.28
Consensus pattern (482 bp):
TTGTGGGCTTTGAAGGTTGCCACTAACTTGTGGGCTTTTAAAGATTGCCACTGACTTGTGGGCTT
TTAAAGGTTGCCACTGACTTGTGGGCTTTTGAAAAGGGTGCCACTAACTTGTGGGCTTAAGAGGA
AAAAGAGTGCTACGGAGTTGTGAGCTTACAAAAGAAAAAGAGTGCCATGGAGTTGTGGACTTTGG
AAAAGATGCCACCGACTTGTGGGCTTCGGAAAAGGGTGCCACTGATTTGTGGGCTTTGAAGGTTG
CCACTGACTTGTGGGCTTTTAAAGATTGCCACTGACTTGTGGGCTTTTAAAGGTTGCCACTGACT
TGTGGGCTTTTGAAAAGGGTGCCACTAACTTGTGGGCTTAAGAGGAAAAAGAGTGCTACGGAGTT
GTGAGCTTACAAAAGAAAAAGAGTGCCATGGAGTTATGGACTTTGGAAAAGATGCCACCGACTTG
TGGGCTTCGGAAAAGGGTGCCACTGAT
Found at i:3184762 original size:34 final size:35
Alignment explanation
Indices: 3184724--3184798 Score: 98
Period size: 35 Copynumber: 2.2 Consensus size: 35
3184714 TGCCACTAAC
* * *
3184724 TTGTGGGCTTA-AGAGGAAAAAGAGTGCTACGGAG
1 TTGTGGGCTTACAAAAGAAAAAGAGTGCCACGGAG
* *
3184758 TTGTGAGCTTACAAAAGAAAAAGAGTGCCATGGAG
1 TTGTGGGCTTACAAAAGAAAAAGAGTGCCACGGAG
3184793 TTGTGG
1 TTGTGG
3184799 ACTTTGGAAA
Statistics
Matches: 34, Mismatches: 6, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
34 10 0.29
35 24 0.71
ACGTcount: A:0.33, C:0.09, G:0.35, T:0.23
Consensus pattern (35 bp):
TTGTGGGCTTACAAAAGAAAAAGAGTGCCACGGAG
Found at i:3186424 original size:1 final size:1
Alignment explanation
Indices: 3186418--3186480 Score: 63
Period size: 1 Copynumber: 63.0 Consensus size: 1
3186408 ATCCGGACCC
* * * * * * *
3186418 TTTTTTTTGTTTTTTTTTTGTTTTTGTTTTGTTTTTTTTTTTTGTTTTGTTTTGTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
3186481 ATGGAGGACG
Statistics
Matches: 48, Mismatches: 14, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
1 48 1.00
ACGTcount: A:0.00, C:0.00, G:0.11, T:0.89
Consensus pattern (1 bp):
T
Found at i:3186434 original size:11 final size:11
Alignment explanation
Indices: 3186418--3186480 Score: 92
Period size: 11 Copynumber: 5.6 Consensus size: 11
3186408 ATCCGGACCC
3186418 TTTTTTTTGTT
1 TTTTTTTTGTT
3186429 TTTTTTTTGTT
1 TTTTTTTTGTT
*
3186440 TTTGTTTTGTT
1 TTTTTTTTGTT
3186451 TTTTTTTT-TT
1 TTTTTTTTGTT
3186461 GTTTTGTTTTGTT
1 -TTTT-TTTTGTT
3186474 TTTTTTT
1 TTTTTTT
3186481 ATGGAGGACG
Statistics
Matches: 47, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
10 2 0.04
11 35 0.74
12 8 0.17
13 2 0.04
ACGTcount: A:0.00, C:0.00, G:0.11, T:0.89
Consensus pattern (11 bp):
TTTTTTTTGTT
Found at i:3186441 original size:18 final size:18
Alignment explanation
Indices: 3186420--3186477 Score: 77
Period size: 17 Copynumber: 3.3 Consensus size: 18
3186410 CCGGACCCTT
3186420 TTTTTTGTTTTTTTTTTG
1 TTTTTTGTTTTTTTTTTG
3186438 -TTTTTGTTTTGTTTTTT-
1 TTTTTTGTTTT-TTTTTTG
*
3186455 TTTTTTG-TTTTGTTTTG
1 TTTTTTGTTTTTTTTTTG
3186472 TTTTTT
1 TTTTTT
3186478 TTTATGGAGG
Statistics
Matches: 36, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
16 5 0.14
17 19 0.53
18 12 0.33
ACGTcount: A:0.00, C:0.00, G:0.12, T:0.88
Consensus pattern (18 bp):
TTTTTTGTTTTTTTTTTG
Found at i:3186453 original size:23 final size:23
Alignment explanation
Indices: 3186418--3186480 Score: 103
Period size: 23 Copynumber: 2.8 Consensus size: 23
3186408 ATCCGGACCC
*
3186418 TTTT-TTTTGTTTTTTTTTTGT-
1 TTTTGTTTTGTTTTTTTTTTTTG
3186439 TTTTGTTTTGTTTTTTTTTTTTG
1 TTTTGTTTTGTTTTTTTTTTTTG
3186462 TTTTGTTTTGTTTTTTTTT
1 TTTTGTTTTGTTTTTTTTT
3186481 ATGGAGGACG
Statistics
Matches: 39, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
21 4 0.10
22 16 0.41
23 19 0.49
ACGTcount: A:0.00, C:0.00, G:0.11, T:0.89
Consensus pattern (23 bp):
TTTTGTTTTGTTTTTTTTTTTTG
Found at i:3186478 original size:18 final size:17
Alignment explanation
Indices: 3186418--3186478 Score: 88
Period size: 18 Copynumber: 3.5 Consensus size: 17
3186408 ATCCGGACCC
3186418 TTTTTTTTGTTTT-TTT
1 TTTTTTTTGTTTTGTTT
3186434 TTTGTTTTTGTTTTGTTTT
1 TTT-TTTTTGTTTTG-TTT
3186453 TTTTTTTTGTTTTGTTT
1 TTTTTTTTGTTTTGTTT
3186470 TGTTTTTTT
1 T-TTTTTTT
3186479 TTATGGAGGA
Statistics
Matches: 41, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
16 3 0.07
17 14 0.34
18 18 0.44
19 6 0.15
ACGTcount: A:0.00, C:0.00, G:0.11, T:0.89
Consensus pattern (17 bp):
TTTTTTTTGTTTTGTTT
Found at i:3195027 original size:13 final size:13
Alignment explanation
Indices: 3195009--3195034 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
3194999 CAATTTTTTG
3195009 TGTATCGATACAT
1 TGTATCGATACAT
3195022 TGTATCGATACAT
1 TGTATCGATACAT
3195035 ACTTTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:3195046 original size:32 final size:33
Alignment explanation
Indices: 3194989--3195052 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 33
3194979 TACAAGCCAA
**
3194989 TGTATCGATACAATTTTTTGTGTATCGATACAT
1 TGTATCGATACAATACTTTGTGTATCGATACAT
3195022 TGTATCGATAC-ATACTTTGTGTATCGATACA
1 TGTATCGATACAATACTTTGTGTATCGATACA
3195053 AGTTTGGCTA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 18 0.62
33 11 0.38
ACGTcount: A:0.28, C:0.14, G:0.16, T:0.42
Consensus pattern (33 bp):
TGTATCGATACAATACTTTGTGTATCGATACAT
Found at i:3197608 original size:13 final size:13
Alignment explanation
Indices: 3197590--3197627 Score: 58
Period size: 13 Copynumber: 2.9 Consensus size: 13
3197580 ATAATCCCCC
*
3197590 TGTATCGATATAG
1 TGTATCGATACAG
*
3197603 TGTATCGATACAT
1 TGTATCGATACAG
3197616 TGTATCGATACA
1 TGTATCGATACA
3197628 AAGAAAAATG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.32, C:0.13, G:0.18, T:0.37
Consensus pattern (13 bp):
TGTATCGATACAG
Found at i:3199718 original size:15 final size:15
Alignment explanation
Indices: 3199698--3199728 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
3199688 ATTTCGTTTG
*
3199698 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
3199713 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
3199728 G
1 G
3199729 GACATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Found at i:3203812 original size:13 final size:13
Alignment explanation
Indices: 3203794--3203819 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
3203784 CAATTTTTTG
3203794 TGTATCGATACAT
1 TGTATCGATACAT
3203807 TGTATCGATACAT
1 TGTATCGATACAT
3203820 ACTTTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:3203831 original size:32 final size:33
Alignment explanation
Indices: 3203774--3203837 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 33
3203764 TACAAGCCAA
**
3203774 TGTATCGATACAATTTTTTGTGTATCGATACAT
1 TGTATCGATACAATACTTTGTGTATCGATACAT
3203807 TGTATCGATAC-ATACTTTGTGTATCGATACA
1 TGTATCGATACAATACTTTGTGTATCGATACA
3203838 AGTTTGGCTA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 18 0.62
33 11 0.38
ACGTcount: A:0.28, C:0.14, G:0.16, T:0.42
Consensus pattern (33 bp):
TGTATCGATACAATACTTTGTGTATCGATACAT
Found at i:3210367 original size:52 final size:52
Alignment explanation
Indices: 3210289--3210469 Score: 317
Period size: 52 Copynumber: 3.5 Consensus size: 52
3210279 CGAAATATGA
* * *
3210289 AAATTTGCCTGCATGTATCGATACATTTAATAGTGTATCGATACATTTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGC
3210341 AAATTTGCCTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGC
*
3210393 AAATTTGCCTACATGTATCGATACATTTTATAATGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGC
*
3210445 AAATTTGCCTGCATGTATTGATACA
1 AAATTTGCCTGCATGTATCGATACA
3210470 AAGATCAGTG
Statistics
Matches: 123, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
52 123 1.00
ACGTcount: A:0.30, C:0.17, G:0.17, T:0.36
Consensus pattern (52 bp):
AAATTTGCCTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGC
Found at i:3210496 original size:13 final size:13
Alignment explanation
Indices: 3210478--3210502 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3210468 CAAAGATCAG
3210478 TGTATCGATACAA
1 TGTATCGATACAA
3210491 TGTATCGATACA
1 TGTATCGATACA
3210503 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:3210583 original size:13 final size:13
Alignment explanation
Indices: 3210565--3210589 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3210555 CAAAAAAACA
3210565 TGTATCGATACAT
1 TGTATCGATACAT
3210578 TGTATCGATACA
1 TGTATCGATACA
3210590 ATACTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:3220874 original size:26 final size:26
Alignment explanation
Indices: 3220845--3220935 Score: 107
Period size: 26 Copynumber: 3.4 Consensus size: 26
3220835 AAAAACTAAG
3220845 AAAACAAAAAAAACCAAGAAAAAAACA
1 AAAACAAAAAAAA-CAAGAAAAAAACA
3220872 AAAACAATAAAAAAC-AG-AAAAAACTA
1 AAAACAA-AAAAAACAAGAAAAAAAC-A
*
3220898 AAAGCAAAAAAAACAA-AAAAAAACAA
1 AAAACAAAAAAAACAAGAAAAAAAC-A
3220924 ACAAACAAAAAA
1 A-AAACAAAAAA
3220936 GGGGTCTAGA
Statistics
Matches: 56, Mismatches: 3, Indels: 10
0.81 0.04 0.14
Matches are distributed among these distances:
25 14 0.25
26 19 0.34
27 17 0.30
28 6 0.11
ACGTcount: A:0.81, C:0.13, G:0.03, T:0.02
Consensus pattern (26 bp):
AAAACAAAAAAAACAAGAAAAAAACA
Found at i:3220875 original size:9 final size:9
Alignment explanation
Indices: 3220832--3220935 Score: 81
Period size: 9 Copynumber: 11.7 Consensus size: 9
3220822 AAAAAATTAA
3220832 AAAAAAAAC
1 AAAAAAAAC
* *
3220841 TAAGAAAAC
1 AAAAAAAAC
3220850 AAAAAAAACC
1 AAAAAAAA-C
*
3220860 AAGAAAAA-
1 AAAAAAAAC
*
3220868 AACAAAAAC
1 AAAAAAAAC
3220877 AATAAAAAAC
1 AA-AAAAAAC
*
3220887 AGAAAAAAC
1 AAAAAAAAC
* *
3220896 --TAAAAGC
1 AAAAAAAAC
3220903 AAAAAAAAC
1 AAAAAAAAC
3220912 AAAAAAAA-
1 AAAAAAAAC
*
3220920 ACAAACAAAC
1 A-AAAAAAAC
3220930 AAAAAA
1 AAAAAA
3220936 GGGGTCTAGA
Statistics
Matches: 74, Mismatches: 14, Indels: 14
0.73 0.14 0.14
Matches are distributed among these distances:
7 5 0.07
8 8 0.11
9 45 0.61
10 16 0.22
ACGTcount: A:0.81, C:0.12, G:0.04, T:0.03
Consensus pattern (9 bp):
AAAAAAAAC
Found at i:3220924 original size:10 final size:10
Alignment explanation
Indices: 3220831--3220924 Score: 61
Period size: 10 Copynumber: 9.3 Consensus size: 10
3220821 AAAAAAATTA
3220831 AAAAAAAAAC
1 AAAAAAAAAC
* *
3220841 -TAAGAAAAC
1 AAAAAAAAAC
*
3220850 AAAAAAAACC
1 AAAAAAAAAC
3220860 AAGAAAAAAAC
1 AA-AAAAAAAC
3220871 AAAAACAATAA-
1 AAAAA-AA-AAC
3220882 AAAACAGAAAA-
1 AAAA-A-AAAAC
** *
3220893 AACTAAAAGC
1 AAAAAAAAAC
3220903 -AAAAAAAAC
1 AAAAAAAAAC
3220912 AAAAAAAAAC
1 AAAAAAAAAC
3220922 AAA
1 AAA
3220925 CAAACAAAAA
Statistics
Matches: 64, Mismatches: 13, Indels: 14
0.70 0.14 0.15
Matches are distributed among these distances:
9 16 0.25
10 24 0.38
11 19 0.30
12 5 0.08
ACGTcount: A:0.81, C:0.12, G:0.04, T:0.03
Consensus pattern (10 bp):
AAAAAAAAAC
Found at i:3222214 original size:28 final size:28
Alignment explanation
Indices: 3222183--3222584 Score: 457
Period size: 28 Copynumber: 14.1 Consensus size: 28
3222173 TGTTCATCTC
* *
3222183 TTCAAAGCCCACAGGTCAGTGGCATCAT
1 TTCAAAGCCCACAAGTCAGTGGCATCCT
* * *
3222211 TTCAACGCCCATAAGTCAGTGGCATCTT
1 TTCAAAGCCCACAAGTCAGTGGCATCCT
*
3222239 TTCAAAGCCCACAAGTCAATGGCATCCT
1 TTCAAAGCCCACAAGTCAGTGGCATCCT
*
3222267 TTCAAAGCCCACAAGTTAGTGGCATCCT
1 TTCAAAGCCCACAAGTCAGTGGCATCCT
* * * * *
3222295 TTCAAAACTCATAAGTCAATGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCATCCT
*
3222323 TTCAAAGCCCACAAGTTAGTGGCATCCT
1 TTCAAAGCCCACAAGTCAGTGGCATCCT
* * *
3222351 TTCAAAGCCCATAAGTCAATGGTATCCT
1 TTCAAAGCCCACAAGTCAGTGGCATCCT
3222379 TTCAAAGCCCACAAGTCAGTGGCAT-CT
1 TTCAAAGCCCACAAGTCAGTGGCATCCT
* *
3222406 CTTCAAAAGACCACAAGTCAGTGGCATCTT
1 -TTC-AAAGCCCACAAGTCAGTGGCATCCT
*
3222436 TTCAAAGCCCACAAGTCAGTGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCATCCT
3222464 TTCAAAGCCCACAAGTCAGTGGCATACCCT
1 TTCAAAGCCCACAAGTCAGTGGCAT--CCT
* * *
3222494 TTCCAAGCCCACAAGTCAGTGACACCCT
1 TTCAAAGCCCACAAGTCAGTGGCATCCT
* * *
3222522 TTCCAAGCCCACACAAGTCGGTGGCAACTCTT
1 TTCAAAG-CC-CACAAGTCAGTGGC-A-TCCT
* *
3222554 TTCAATGCCCACACAAGTTAGTGGCA-CCT
1 TTCAAAG-CC-CACAAGTCAGTGGCATCCT
3222583 TT
1 TT
3222585 TTTTTAAAAA
Statistics
Matches: 318, Mismatches: 47, Indels: 17
0.83 0.12 0.04
Matches are distributed among these distances:
27 2 0.01
28 223 0.70
29 30 0.09
30 38 0.12
31 2 0.01
32 23 0.07
ACGTcount: A:0.29, C:0.31, G:0.17, T:0.23
Consensus pattern (28 bp):
TTCAAAGCCCACAAGTCAGTGGCATCCT
Found at i:3223520 original size:20 final size:20
Alignment explanation
Indices: 3223495--3223660 Score: 100
Period size: 20 Copynumber: 7.8 Consensus size: 20
3223485 TTTTACCTAG
3223495 ATGTATCGATACATTTTTCA
1 ATGTATCGATACATTTTTCA
* * * *
3223515 ATGTATCCATACATGTATGA
1 ATGTATCGATACATTTTTCA
3223535 ATGTATCGATACATTCTTT-A
1 ATGTATCGATACATT-TTTCA
*
3223555 ATGTTTCGATACATTCTGTCTTTTTACCCA
1 ATGTATCGATACA-------TTTTT---CA
*
3223585 GATGTATCGATACATTTTCCA
1 -ATGTATCGATACATTTTTCA
* * *
3223606 ATGTATCGATACATGTATGA
1 ATGTATCGATACATTTTTCA
* *
3223626 ATGTATCGATATATTCTTCA
1 ATGTATCGATACATTTTTCA
* *
3223646 ATGCATTGATACATT
1 ATGTATCGATACATT
3223661 CTGTCTTTTT
Statistics
Matches: 111, Mismatches: 22, Indels: 26
0.70 0.14 0.16
Matches are distributed among these distances:
20 85 0.77
21 4 0.04
24 4 0.04
26 3 0.03
27 2 0.02
30 1 0.01
31 12 0.11
ACGTcount: A:0.30, C:0.16, G:0.13, T:0.42
Consensus pattern (20 bp):
ATGTATCGATACATTTTTCA
Done.