Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold32
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 5587194
ACGTcount: A:0.26, C:0.15, G:0.16, T:0.26
Warning! 895791 characters in sequence are not A, C, G, or T
File 4 of 33
Found at i:574227 original size:20 final size:19
Alignment explanation
Indices: 574181--574237 Score: 78
Period size: 19 Copynumber: 2.9 Consensus size: 19
574171 TTGTATCAAT
* *
574181 ACATTATATCGATACATGT
1 ACATTGTATCGATACATGC
*
574200 TCATTGTATCGATACATGC
1 ACATTGTATCGATACATGC
574219 ACAATTGTATCGATACATG
1 AC-ATTGTATCGATACATG
574238 AAACTGGCAG
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
19 17 0.52
20 16 0.48
ACGTcount: A:0.33, C:0.18, G:0.14, T:0.35
Consensus pattern (19 bp):
ACATTGTATCGATACATGC
Found at i:574604 original size:20 final size:19
Alignment explanation
Indices: 574579--574649 Score: 70
Period size: 20 Copynumber: 3.6 Consensus size: 19
574569 ACCCTGAAAA
574579 GTATCGATACACATTTAAAT
1 GTATCGATACACA-TTAAAT
* **
574599 GTATCGATACAAATTGCAT
1 GTATCGATACACATTAAAT
**
574618 AGTATCGATACACACAAATAT
1 -GTATCGATACACATTAA-AT
574639 GTATCGATACA
1 GTATCGATACA
574650 GGACATTGGC
Statistics
Matches: 41, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
19 4 0.10
20 35 0.85
21 2 0.05
ACGTcount: A:0.41, C:0.17, G:0.13, T:0.30
Consensus pattern (19 bp):
GTATCGATACACATTAAAT
Found at i:574695 original size:20 final size:20
Alignment explanation
Indices: 574666--574703 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
574656 TGGCAGTAGC
*
574666 CAAATTTGTATCGATACACA
1 CAAATATGTATCGATACACA
574686 CAAATATGTATCGATACA
1 CAAATATGTATCGATACA
574704 GGACATTGGC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.42, C:0.18, G:0.11, T:0.29
Consensus pattern (20 bp):
CAAATATGTATCGATACACA
Found at i:574768 original size:53 final size:54
Alignment explanation
Indices: 574619--574809 Score: 350
Period size: 54 Copynumber: 3.6 Consensus size: 54
574609 AAATTGCATA
574619 GTATCGATACACACAAATATGTATCGATACAGGACATTGGCAGTAGCCAAATTT
1 GTATCGATACACACAAATATGTATCGATACAGGACATTGGCAGTAGCCAAATTT
574673 GTATCGATACACACAAATATGTATCGATACAGGACATTGGCAGTAGCCAAATTT
1 GTATCGATACACACAAATATGTATCGATACAGGACATTGGCAGTAGCCAAATTT
* *
574727 GTATCGATACACAC-AATATGTATCGATACTGGTCATTGGCAGTAGCCAAATTT
1 GTATCGATACACACAAATATGTATCGATACAGGACATTGGCAGTAGCCAAATTT
574780 GTATCGATACACA-AAATATGTATCGATACA
1 GTATCGATACACACAAATATGTATCGATACA
574810 TTGGTAGTAG
Statistics
Matches: 133, Mismatches: 3, Indels: 3
0.96 0.02 0.02
Matches are distributed among these distances:
53 65 0.49
54 68 0.51
ACGTcount: A:0.37, C:0.18, G:0.18, T:0.27
Consensus pattern (54 bp):
GTATCGATACACACAAATATGTATCGATACAGGACATTGGCAGTAGCCAAATTT
Found at i:574852 original size:10 final size:10
Alignment explanation
Indices: 574833--574863 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
574823 AATCTCATTT
574833 TCACTGTTCA
1 TCACTGTTCA
*
574843 TCACTATTCA
1 TCACTGTTCA
574853 TCACTGTTCA
1 TCACTGTTCA
574863 T
1 T
574864 GTATTGATAC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.23, C:0.29, G:0.06, T:0.42
Consensus pattern (10 bp):
TCACTGTTCA
Found at i:574885 original size:21 final size:22
Alignment explanation
Indices: 574851--574906 Score: 96
Period size: 21 Copynumber: 2.6 Consensus size: 22
574841 CATCACTATT
*
574851 CATCACTGTTCATGTATTGATA
1 CATCACTGTTCATGTATCGATA
574873 CATCACT-TTCATGTATCGATA
1 CATCACTGTTCATGTATCGATA
574894 CATCACTGTTCAT
1 CATCACTGTTCAT
574907 AGGTATATCT
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
21 20 0.62
22 12 0.38
ACGTcount: A:0.27, C:0.23, G:0.11, T:0.39
Consensus pattern (22 bp):
CATCACTGTTCATGTATCGATA
Found at i:575134 original size:34 final size:35
Alignment explanation
Indices: 575071--575137 Score: 102
Period size: 37 Copynumber: 1.9 Consensus size: 35
575061 CTAAGTGATT
575071 GAGAGGTTCTATCTTAGCCTTTGAAAAAGATAGAGA
1 GAGAGGTTCTATCTTAGCCTTTG-AAAAGATAGAGA
575107 GAGAGGTTTCTATCTTAGCC-TTG-AAAGATAG
1 GAGAGG-TTCTATCTTAGCCTTTGAAAAGATAG
575138 TGTTGTAAGC
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
34 8 0.27
36 9 0.30
37 13 0.43
ACGTcount: A:0.33, C:0.12, G:0.25, T:0.30
Consensus pattern (35 bp):
GAGAGGTTCTATCTTAGCCTTTGAAAAGATAGAGA
Found at i:575481 original size:19 final size:20
Alignment explanation
Indices: 575457--575494 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
575447 ATAATTTCAA
575457 ATGAA-TGTATCGATACATT
1 ATGAATTGTATCGATACATT
*
575476 ATGAATTGTATTGATACAT
1 ATGAATTGTATCGATACAT
575495 AGCAACGAGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.37, C:0.08, G:0.16, T:0.39
Consensus pattern (20 bp):
ATGAATTGTATCGATACATT
Found at i:583141 original size:153 final size:149
Alignment explanation
Indices: 582642--583141 Score: 397
Period size: 149 Copynumber: 3.3 Consensus size: 149
582632 CTCCATTTTA
* * * *
582642 AAAATTACCAAAATGCCCTTAGGGTATACCTTTGACGTGAAAGTATCTCGATAA-CTGTAAGGGA
1 AAAATTACCAAAATG-CCTTAAGGTATACCTTCGACGTGAAAGTA-CTCGATAATC-CTAAAGGA
* * * *
582706 TGTGAAAATGATAAATAAAA-GAATGAACCTATCCTAAATGACA-CCTTTGGCATAAAAGTGACC
63 TATGAAAAT-AT-TATAAAATG-ATGAACCTATCCTAAAT-ATATACTTTGGCATAAAAGTGACC
* * * *
582769 TAGTGACTACTAAGACTT-GGTTCTAAAGG
124 -A-CGACCACTAGGA-TTCAGTTCT-AAGG
* * * * * *
582798 AAAATTACCAAAATGCCTCAAGGATATACCTTCGATGTGAAAGTAC-CCAGCAATTCTAAAGGAC
1 AAAATTACCAAAATGCCTTAAGG-TATACCTTCGACGTGAAAGTACTCGA-TAATCCTAAAGGAT
* * ** * *
582862 AT-AAAAGTAGTATAAAATGATGAACCTATCCAAAACGTATACCTTTGG-AGGAAAAATGACC-C
64 ATGAAAA-TATTATAAAATGATGAACCTATCCTAAATATATA-CTTTGGCA-TAAAAGTGACCAC
** * **
582924 GA-CGTTAGGATTCAGTTGTAATA
126 GACCACTAGGATTCAGTTCTAAGG
** * * * *
582947 AAAATTATGAAAATGCCACTAAGTTATACCTTCCACGTGAAAGTACTCGATAATCCTAAATGATA
1 AAAATTACCAAAATGCC-TTAAGGTATACCTTCGACGTGAAAGTACTCGATAATCCTAAAGGATA
583012 TGAAAATATTATAAAATGATGAACCTATCCTAAATATATACTTTGGCATAAAAGTGACCAAACGA
65 TGAAAATATTATAAAATGATGAACCTATCCTAAATATATACTTTGGCATAAAAGTGACC--ACGA
*
583077 CCACCTAGGATTCAATTCTAAGG
128 CCA-CTAGGATTCAGTTCTAAGG
* * *
583100 AAAATTACAAAAATACTCTTAAGGTATACCTTCAACGTGAAA
1 AAAATTACCAAAATGC-CTTAAGGTATACCTTCGACGTGAAA
583142 ATACCTGGTG
Statistics
Matches: 266, Mismatches: 59, Indels: 41
0.73 0.16 0.11
Matches are distributed among these distances:
148 15 0.06
149 82 0.31
150 17 0.06
151 5 0.02
152 2 0.01
153 70 0.26
154 24 0.09
155 17 0.06
156 34 0.13
ACGTcount: A:0.41, C:0.17, G:0.16, T:0.26
Consensus pattern (149 bp):
AAAATTACCAAAATGCCTTAAGGTATACCTTCGACGTGAAAGTACTCGATAATCCTAAAGGATAT
GAAAATATTATAAAATGATGAACCTATCCTAAATATATACTTTGGCATAAAAGTGACCACGACCA
CTAGGATTCAGTTCTAAGG
Found at i:585414 original size:19 final size:20
Alignment explanation
Indices: 585390--585428 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
585380 AAGATTAAAT
585390 AAAACCG-AAA-AATGTTTTA
1 AAAACCGTAAACAA-GTTTTA
585409 AAAACCGTAAACAAGTTTTA
1 AAAACCGTAAACAAGTTTTA
585429 TTCACCCAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 7 0.39
20 9 0.50
21 2 0.11
ACGTcount: A:0.51, C:0.13, G:0.10, T:0.26
Consensus pattern (20 bp):
AAAACCGTAAACAAGTTTTA
Found at i:585679 original size:23 final size:19
Alignment explanation
Indices: 585621--585713 Score: 75
Period size: 20 Copynumber: 4.7 Consensus size: 19
585611 AACCCTTGAA
* *
585621 TGTATCGATACATGCCTAGA
1 TGTATCGATACATGCTTA-T
*
585641 TGTATCGATATATTATGC-T-T
1 TGTATCG--ATA-CATGCTTAT
585661 TGTATCGATACATGCTTAT
1 TGTATCGATACATGCTTAT
*
585680 TGTATCGATACATGGAC-AAT
1 TGTATCGATACAT-G-CTTAT
585700 TGTATCGATACATG
1 TGTATCGATACATG
585714 ACATTGGCAG
Statistics
Matches: 62, Mismatches: 4, Indels: 15
0.77 0.05 0.19
Matches are distributed among these distances:
17 4 0.06
18 4 0.06
19 15 0.24
20 30 0.48
21 1 0.02
22 4 0.06
23 4 0.06
ACGTcount: A:0.29, C:0.15, G:0.18, T:0.38
Consensus pattern (19 bp):
TGTATCGATACATGCTTAT
Found at i:585703 original size:20 final size:19
Alignment explanation
Indices: 585660--585796 Score: 82
Period size: 20 Copynumber: 6.7 Consensus size: 19
585650 ATATTATGCT
*
585660 TTGTATCGATACATG-CTTA
1 TTGTATCGATACATGAC-AA
585679 TTGTATCGATACATGGACAA
1 TTGTATCGATACAT-GACAA
585699 TTGTATCGATACATGAC-A
1 TTGTATCGATACATGACAA
* * * * *
585717 TTGGCAGTAGCTACCCTATCACTAT
1 TT-GTA-TCGATA--C-ATGAC-AA
585742 TTGTATCGATACATGGTACAA
1 TTGTATCGATACAT-G-ACAA
*
585763 -TGTATCGATACATGATGAAA
1 TTGTATCGATACATGA--CAA
585783 TTGTATCGATACAT
1 TTGTATCGATACAT
585797 TACTTGTAGC
Statistics
Matches: 92, Mismatches: 12, Indels: 26
0.71 0.09 0.20
Matches are distributed among these distances:
18 4 0.04
19 20 0.22
20 37 0.40
21 16 0.17
22 3 0.03
23 8 0.09
24 2 0.02
25 2 0.02
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.34
Consensus pattern (19 bp):
TTGTATCGATACATGACAA
Found at i:589190 original size:20 final size:20
Alignment explanation
Indices: 589165--589204 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
589155 CAAGATATAC
589165 TTGGGTTTTATTTTTAAGCA
1 TTGGGTTTTATTTTTAAGCA
589185 TTGGGTTTTATTTTTAAGCA
1 TTGGGTTTTATTTTTAAGCA
589205 CTAAAGATGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.20, C:0.05, G:0.20, T:0.55
Consensus pattern (20 bp):
TTGGGTTTTATTTTTAAGCA
Found at i:589708 original size:13 final size:13
Alignment explanation
Indices: 589690--589714 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
589680 ATGTTGCACA
589690 GTATCGATACATT
1 GTATCGATACATT
589703 GTATCGATACAT
1 GTATCGATACAT
589715 GACCAAATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
GTATCGATACATT
Found at i:589822 original size:13 final size:13
Alignment explanation
Indices: 589804--589829 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
589794 ACACACAATA
589804 TGTATCGATACAT
1 TGTATCGATACAT
589817 TGTATCGATACAT
1 TGTATCGATACAT
589830 CCCAAAATGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:589845 original size:33 final size:32
Alignment explanation
Indices: 589784--589851 Score: 109
Period size: 33 Copynumber: 2.1 Consensus size: 32
589774 CCTTAATTGT
*
589784 TTGTATCGATACACACAATATGTATCGATACA
1 TTGTATCGATACACACAAAATGTATCGATACA
*
589816 TTGTATCGATACATCCCAAAATGTATCGATACA
1 TTGTATCGATACA-CACAAAATGTATCGATACA
589849 TTG
1 TTG
589852 GCTTGTAACT
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
32 13 0.39
33 20 0.61
ACGTcount: A:0.35, C:0.19, G:0.13, T:0.32
Consensus pattern (32 bp):
TTGTATCGATACACACAAAATGTATCGATACA
Found at i:595039 original size:19 final size:19
Alignment explanation
Indices: 595015--595068 Score: 99
Period size: 19 Copynumber: 2.8 Consensus size: 19
595005 CAGTAGCTAA
*
595015 TTATGTATCGATACAATAC
1 TTATGTATCGATACAACAC
595034 TTATGTATCGATACAACAC
1 TTATGTATCGATACAACAC
595053 TTATGTATCGATACAA
1 TTATGTATCGATACAA
595069 ATCATTGAAT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 34 1.00
ACGTcount: A:0.37, C:0.17, G:0.11, T:0.35
Consensus pattern (19 bp):
TTATGTATCGATACAACAC
Found at i:596117 original size:52 final size:48
Alignment explanation
Indices: 595856--596183 Score: 388
Period size: 48 Copynumber: 6.6 Consensus size: 48
595846 TGATGAAGGC
* * * **
595856 GCCAATATGTTGAGTCAAGGCCAGCGATATTGGACTTAAAGACGAAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTG-AGGT
* * * * * * *
595905 GCCAATGTGTTGAGTT-AAGGACAGCGACATTGGACTAAAAGATGAGGT
1 GCCAATATGCTGA-TTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGT
* *
595953 GCCACTATGCTGATTCAAGGCCAACTATATTGGACTTAAAGGTGAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGT
* *
596001 GCCAATATGCTGATTTAAGGCCAGCTATATTAGACTTAAAGGTGAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGT
* *
596049 GCCAATATGCTGATTCAAGGCGAGCTATTTTGGACTTAAAGGTGATAAAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTG----AGGT
*
596101 GCCAATATGCTAATTCAAGGCCAGCTATATTGGACTTAAAGGTGATAAAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTG----AGGT
596153 GCCAATATGCTGATTCAAGGCCAGCTATATT
1 GCCAATATGCTGATTCAAGGCCAGCTATATT
596184 CGTCCCCACA
Statistics
Matches: 246, Mismatches: 27, Indels: 9
0.87 0.10 0.03
Matches are distributed among these distances:
47 2 0.01
48 124 0.50
49 36 0.15
50 1 0.00
52 83 0.34
ACGTcount: A:0.32, C:0.16, G:0.26, T:0.27
Consensus pattern (48 bp):
GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGT
Found at i:596888 original size:48 final size:48
Alignment explanation
Indices: 596763--597147 Score: 491
Period size: 48 Copynumber: 7.8 Consensus size: 48
596753 TTTTAAAAAT
* * *
596763 GATGAAGGCGCCAATATGCTGAGTCAAGGCCAGCGATATTGGACTTAAA
1 GATG-AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
* * * * * * *
596812 GACGAAGGTGCCAATGTGTTGAGTCAAGGACAGCGACATTGGACTTAAA
1 GATG-AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
* *
596861 GATGAGGTGCCACTATGCTGATTCAAGGCCAACTATATTGGACTTAAA
1 GATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
* * *
596909 GGTGAGGTGCCAATATGCTGATTTAAGGCCAGCTATATTAGACTTAAA
1 GATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
*
596957 GGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
1 GATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
*
597005 GGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
1 GATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
* *
597053 GGTGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTTGACTTAAA
1 ---GAT-GAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
* *
597105 GGTGATAAAGGTGCCAACATGCTGATTCAAGGCCAGCTATATT
1 ---GAT-GAGGTGCCAATATGCTGATTCAAGGCCAGCTATATT
597148 CGTCCCCACA
Statistics
Matches: 306, Mismatches: 26, Indels: 5
0.91 0.08 0.01
Matches are distributed among these distances:
48 173 0.57
49 46 0.15
51 2 0.01
52 85 0.28
ACGTcount: A:0.31, C:0.17, G:0.26, T:0.26
Consensus pattern (48 bp):
GATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
Found at i:597770 original size:964 final size:964
Alignment explanation
Indices: 595850--598010 Score: 3698
Period size: 964 Copynumber: 2.2 Consensus size: 964
595840 TAAAAATGAT
* * * *
595850 GAAGGCGCCAATATGTTGAGTCAAGGCCAGCGATATTGGACTTAAAGACGAAGGTGCCAATGTGT
1 GAAGGTGCCAATATGTTGAGTCAAGGCCAGCGATATTGGACTTAAAGATG-AGGTGCCAATATGC
* * * * * * *
595915 TGAGTT-AAGGACAGCGACATTGGACTAAAAGATGAGGTGCCACTATGCTGATTCAAGGCCAACT
65 TGA-TTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCT
* *
595979 ATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTTAAGGCCAGCTATATTAGACTTAAAGGT
129 ATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGT
* *
596044 GAGGTGCCAATATGCTGATTCAAGGCGAGCTATTTTGGACTTAAAGGTGATAAAGGTGCCAATAT
194 GAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGATAAAGGTGCCAATAT
*
596109 GCTAATTCAAGGCCAGCTATATTGGACTTAAAGGTGATAAAGGTGCCAATATGCTGATTCAAGGC
259 GCTAATTCAAGGCCAGCTATATTGGACTTAAAGGTGATAAAGGTGCCAACATGCTGATTCAAGGC
596174 CAGCTATATTCGTCCCCACATATGTCGAATCCCCCACCTACTAGCTAGGCCCTAAATTGTTGAAA
324 CAGCTATATTCGTCCCCACATATGTCGAATCCCCCACCTACTAGCTAGGCCCTAAATTGTTGAAA
* * *
596239 TTTGGCCCGGACAAAATGAGGTGTCTATAGCTCACCCTCTTTGGCCGTTTCTGAGTATCAGGAAC
389 ATTGGCCCAGACAAAATGAGGTGTCTACAGCTCACCCTCTTTGGCCGTTTCTGAGTATCAGGAAC
596304 AGGCCAAAGACAAATAGACCCAATTTTGTCTGCGGCCGCATGTCATGACCTTTGGTGATTAATGC
454 AGGCCAAAGACAAATAGACCCAATTTTGTCTGCGGCCGCATGTCATGACCTTTGGTGATTAATGC
596369 TTCGCCGTGATGAAGAGTGCATTGGCGACGGTTCCGATGGAAAAATGAGTTTCTAAGGATTGTCC
519 TTCGCCGTGATGAAGAGTGCATTGGCGACGGTTCCGATGGAAAAATGAGTTTCTAAGGATTGTCC
* *
596434 TCCCTACTAGGTTTTGGAATTTTCTAAGCCTTGACGTCCTTAGATAGGTGTAGATTGGTGTAGAG
584 TCCCTACTAGGTTTTGGAATTTTCTAAGCCTTGACCTCCTTAGATAGGTGTAGATTGGTGTACAG
596499 TTTGGAACGGATTTTGGAAGAATATGGTCAGTATTTTGCAATGCGCCACTGTGCAGATTCAAGGC
649 TTTGGAACGGATTTTGGAAGAATATGGTCAGTATTTTGCAATGCGCCACTGTGCAGATTCAAGGC
596564 CTGCCACACTGGACTTAAAGATGATGAGGATGAAGAGTGATAAAAGGACCAGTACATTGATTCAC
714 CTGCCACACTGGACTTAAAGATGATGAGGATGAAGAGTGATAAAAGGACCAGTACATTGATTCAC
* * * *
596629 GACCAACGATTTTGGGTTTAAAGATGAGAAAAAGGATGTCAATATGCTGATTCATGGTCCGCAAC
779 GACCAACGATATTGGGTTTAAAGATGAGAAAAAGAATGTCAATATGCTGATTCACGGTCAGCAAC
*
596694 AGTTAGACTTGAAGATGAGAAGAATGCCAATGTGCTGATTCAAGGCCAACGGCATTGGGTTTTAA
844 AGTTAGACTTGAAGATGAGAAGAATGCCAATGTGCTGATTCAAAGCCAACGGCATTGGGTTTTAA
* *
596759 AAATGATGAAGGCGCCAATATGCTGAGTCAAGGCCAGCGATATTGGACTTAAAGAC
909 AAAAGATGAAGGCGCCAATATGCTGAGTCAAGGCCAGCGACATTGGACTTAAAGAC
* * * *
596815 GAAGGTGCCAATGTGTTGAGTCAAGGACAGCGACATTGGACTTAAAGATGAGGTGCCACTATGCT
1 GAAGGTGCCAATATGTTGAGTCAAGGCCAGCGATATTGGACTTAAAGATGAGGTGCCAATATGCT
* *
596880 GATTCAAGGCCAACTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTTAAGGCCAGCTAT
66 GATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTAT
*
596945 ATTAGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGA
131 ATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGA
597010 GGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGATAAAGGTGCCAATATGC
196 GGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGATAAAGGTGCCAATATGC
* *
597075 TGATTCAAGGCCAGCTATATTTGACTTAAAGGTGATAAAGGTGCCAACATGCTGATTCAAGGCCA
261 TAATTCAAGGCCAGCTATATTGGACTTAAAGGTGATAAAGGTGCCAACATGCTGATTCAAGGCCA
*
597140 GCTATATTCGTCCCCACATATGTCGAATCCTCCACCTACTAGCTAGGCCCTAAATTGTTGAAAAT
326 GCTATATTCGTCCCCACATATGTCGAATCCCCCACCTACTAGCTAGGCCCTAAATTGTTGAAAAT
597205 TGGCCCAGACAAAATGAGGTGTCTACAGCTCACCCTCTTTGGCCGTTTCTGAGTATCAGGAACAG
391 TGGCCCAGACAAAATGAGGTGTCTACAGCTCACCCTCTTTGGCCGTTTCTGAGTATCAGGAACAG
597270 GCCAAAGACAAATAGACTCC-ATTTTGTCTGCGGCCGCATGTCATGACCTTTGGTGATTAATGCT
456 GCCAAAGACAAATAGAC-CCAATTTTGTCTGCGGCCGCATGTCATGACCTTTGGTGATTAATGCT
* * * *
597334 TCGCCGTGATGAAGAGTGCATTGGCGACGGTTTCGATGGAAAAATGAGTTTGTAGGGTTTGTCCT
520 TCGCCGTGATGAAGAGTGCATTGGCGACGGTTCCGATGGAAAAATGAGTTTCTAAGGATTGTCCT
* *
597399 CCCTACTAGGTTTTGGAATTTTCTAGGGCTTGACCTCCTTAGATAGGTGTAGATTGGTGTACAGT
585 CCCTACTAGGTTTTGGAATTTTCTAAGCCTTGACCTCCTTAGATAGGTGTAGATTGGTGTACAGT
*
597464 TTGGAACGGATTTTGGAAGAATATGGTCAGTATTTTGCAATGTGCCACTGTGCAGATTCAAGGCC
650 TTGGAACGGATTTTGGAAGAATATGGTCAGTATTTTGCAATGCGCCACTGTGCAGATTCAAGGCC
*
597529 TGCCACACTGGACTTAAAGATGATGAGGATGAAGAGTGATAAAAGGACCAGTACATTGATTCATG
715 TGCCACACTGGACTTAAAGATGATGAGGATGAAGAGTGATAAAAGGACCAGTACATTGATTCACG
*
597594 GCCAACGATATTGGGTTTAAAGATGAGAAAAAGAATGTCAATATGCTGATTCACGGTCAGCAACA
780 ACCAACGATATTGGGTTTAAAGATGAGAAAAAGAATGTCAATATGCTGATTCACGGTCAGCAACA
* *
597659 GTTAGACTTGAAGATGAGAAGAATGCTAATGTTCTGATTCAAAGCCAACGGCATTGGGTTTTAAA
845 GTTAGACTTGAAGATGAGAAGAATGCCAATGTGCTGATTCAAAGCCAACGGCATTGGGTTTTAAA
* * * *
597724 AAAGATGAAGGTGCCAATGTGTTGAGTCAAGGCCAGCGACATTGGACTTAAAGAT
910 AAAGATGAAGGCGCCAATATGCTGAGTCAAGGCCAGCGACATTGGACTTAAAGAC
* * * * *
597779 G-AGGTGCCAATATGTTGATTCAAGGCCAACTATATTGGACTTAACGGTGAGGTGCCAATATGCT
1 GAAGGTGCCAATATGTTGAGTCAAGGCCAGCGATATTGGACTTAAAGATGAGGTGCCAATATGCT
*
597843 GATTCAAGGCCAGCTATATTGGACATAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTAT
66 GATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTAT
*
597908 ATTGGACCTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGA
131 ATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTG-
597973 TAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATT
195 ---AGGTGCCAATATGCTGATTCAAGGCCAGCTATATT
598011 CGTCCCCACA
Statistics
Matches: 1123, Mismatches: 67, Indels: 10
0.94 0.06 0.01
Matches are distributed among these distances:
963 180 0.16
964 861 0.77
965 47 0.04
967 35 0.03
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.27
Consensus pattern (964 bp):
GAAGGTGCCAATATGTTGAGTCAAGGCCAGCGATATTGGACTTAAAGATGAGGTGCCAATATGCT
GATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTAT
ATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGA
GGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGATAAAGGTGCCAATATGC
TAATTCAAGGCCAGCTATATTGGACTTAAAGGTGATAAAGGTGCCAACATGCTGATTCAAGGCCA
GCTATATTCGTCCCCACATATGTCGAATCCCCCACCTACTAGCTAGGCCCTAAATTGTTGAAAAT
TGGCCCAGACAAAATGAGGTGTCTACAGCTCACCCTCTTTGGCCGTTTCTGAGTATCAGGAACAG
GCCAAAGACAAATAGACCCAATTTTGTCTGCGGCCGCATGTCATGACCTTTGGTGATTAATGCTT
CGCCGTGATGAAGAGTGCATTGGCGACGGTTCCGATGGAAAAATGAGTTTCTAAGGATTGTCCTC
CCTACTAGGTTTTGGAATTTTCTAAGCCTTGACCTCCTTAGATAGGTGTAGATTGGTGTACAGTT
TGGAACGGATTTTGGAAGAATATGGTCAGTATTTTGCAATGCGCCACTGTGCAGATTCAAGGCCT
GCCACACTGGACTTAAAGATGATGAGGATGAAGAGTGATAAAAGGACCAGTACATTGATTCACGA
CCAACGATATTGGGTTTAAAGATGAGAAAAAGAATGTCAATATGCTGATTCACGGTCAGCAACAG
TTAGACTTGAAGATGAGAAGAATGCCAATGTGCTGATTCAAAGCCAACGGCATTGGGTTTTAAAA
AAGATGAAGGCGCCAATATGCTGAGTCAAGGCCAGCGACATTGGACTTAAAGAC
Found at i:597795 original size:48 final size:48
Alignment explanation
Indices: 597724--598010 Score: 403
Period size: 48 Copynumber: 5.9 Consensus size: 48
597714 GGGTTTTAAA
* * * * *
597724 AAAGATGAAGGTGCCAATGTGTTGAGTCAAGGCCAGCGACATTGGACTT
1 AAAGATG-AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
* *
597773 AAAGATGAGGTGCCAATATGTTGATTCAAGGCCAACTATATTGGACTT
1 AAAGATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
* * *
597821 AACGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACAT
1 AAAGATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
* *
597869 AAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACCT
1 AAAGATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
*
597917 AAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
1 AAAGATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
*
597965 AAAGGTGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATT
1 AAA---GAT-GAGGTGCCAATATGCTGATTCAAGGCCAGCTATATT
598011 CGTCCCCACA
Statistics
Matches: 219, Mismatches: 15, Indels: 5
0.92 0.06 0.02
Matches are distributed among these distances:
48 175 0.80
49 7 0.03
51 2 0.01
52 35 0.16
ACGTcount: A:0.31, C:0.17, G:0.26, T:0.26
Consensus pattern (48 bp):
AAAGATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
Found at i:598534 original size:863 final size:857
Alignment explanation
Indices: 596861--608754 Score: 9343
Period size: 863 Copynumber: 13.3 Consensus size: 857
596851 TGGACTTAAA
* * * * * ** *
596861 GATG-AGGTGCCACTATGCTGATTCAAGGCCAACTATATTGGACTTAAAGGTG-AGGTGCCAATA
1 GATGAAGGCGCCAATATGCTGAGTCAAGGCCAGCGATATTGGACTTAAAGACGAAGGTGCCAATG
* * * * * * * *
596924 TGCTGATTTAAGGCCAGCTATATTAGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAG
66 TGTTGAGTCAAGGCCAACTACATTGGACTTAAAGATGAGGTGCCAATATGCTGATTCAAGGCCAA
*
596989 CTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAG
131 CTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTAGACTTAAAG
*
597054 GTGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTTGACTTAAAGGTGATAAAGGTGC
196 GTG----AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTG----AGGTGC
*
597119 CAACATGCTGATTCAAGGCCAGCTATATTCGTCCCCACATATGTCGAATCCTCCACCTACTAGCT
253 CAATATGCTGATTCAAGGCCAGCTATATTCGTCCCCACATATGTCGAATCCTCCACCTACTAGCT
* * * *
597184 AGGCCCTAAATTGTTGAAAATTGGCCCAGACAAAATGAGGTGTCTACAGCTCACCCTCTTTGGCC
318 AGGCCTTAAATTGCTGAAAATTGGCCC-GACAAAATGAGGTGTCTACAGCTCACCCTCATTGGCT
* * *
597249 G-TTTCTGAGTATCAGGAACAGGCCAAAGACAAATAGACTCCATTTTGTCTGCGGCCGCATGTCA
382 GATTT-TGAGTATCAGGAACAGGCTAAAGACAAATAGACACCATTTTGTCTGCGGCCGGATGTCA
597313 TGACCTTTGGTGATTAATGCTTCGCCGTGATGAAGAGTGCATTGGCGACGGTTTCGATGGAAAAA
446 TGACCTTTGGTGATTAATGCTTCGCCGTGATGAAGAGTGCATTGGCGACGG-TTCGAT-GAAAAA
* *
597378 TGAGTTTGTAGGGTTTGTCCTCCCTACTAGGTTTTGGAATTTTCTAGGGCTTGACCTCCTTAGAT
509 TCAGTTTGCAGGGTTTGTCCTCCCTACTAGGTTTTGGAATTTTCTAGGGCTTGACCTCCTTAGAT
597443 AGGTGTAGATTGGTGTACAGTTTGGAACGGATTTTGGAAGAATATGGTCAGTATTTTGCAATGTG
574 AGGTGTAGATTGGTGTACAGTTTGGAACGGATTTTGGAAGAATATGGTCAGTATTTTGCAATGTG
*
597508 CCACTGTGCAGATTCAAGGCCTGCCACACTGGACTTAAAGATGATGAGGATGAAGAGTGATAAAA
639 CCACTGTGCAGATTCAAGGCCTGCCACACTAGACTTAAAGATGATGAGGATGAAGAGTGATAAAA
* *
597573 GGACCAGTACATTGATTCATGGCCAACGATATTGGGTTTAAAGATGAGAAAAAGAATGTCAATAT
704 GGACCAGTACATTGATTCACGGCCAACGATATTGGGTTTAAAGATGAGAAAAAGGATGTCAATAT
* * *
597638 GCTGATTCACGGTCAGCAACAGTTAGACTTGAAGATGAGAAGAATGCTAATGTTCTGATTCAAAG
769 GCTGATTCACGGTCAGCAACAGTTAGACTTGAAGATGAGAAGAATGCCAATGTGCTGATTCAAGG
*
597703 CCAACGGCATTGGGTTTTAAAAAA
834 CCAACGGCATTGGGTTTTAAAAAT
* * * * * *
597727 GATGAAGGTGCCAATGTGTTGAGTCAAGGCCAGCGACATTGGACTTAAAGATG-AGGTGCCAATA
1 GATGAAGGCGCCAATATGCTGAGTCAAGGCCAGCGATATTGGACTTAAAGACGAAGGTGCCAATG
* * * * *
597791 TGTTGATTCAAGGCCAACTATATTGGACTTAACGGTGAGGTGCCAATATGCTGATTCAAGGCCAG
66 TGTTGAGTCAAGGCCAACTACATTGGACTTAAAGATGAGGTGCCAATATGCTGATTCAAGGCCAA
* * *
597856 CTATATTGGACATAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACCTAAAG
131 CTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTAGACTTAAAG
597921 GTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGATAAAGGTGCCAAT
196 GTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTG----AGGTGCCAAT
597986 ATGCTGATTCAAGGCCAGCTATATTCGTCCCCACATATGTCGAATCCTCCACCTACTAGCTAGGC
257 ATGCTGATTCAAGGCCAGCTATATTCGTCCCCACATATGTCGAATCCTCCACCTACTAGCTAGGC
* * *
598051 CTTAAATTGTTGAAAATTGGCCCGGACAAAATGAGGTGTCTACAGCTCACCCTCTTTGGCTGTTT
322 CTTAAATTGCTGAAAATTGGCCC-GACAAAATGAGGTGTCTACAGCTCACCCTCATTGGCTGATT
598116 TTGAGTATCAGGAACAGGCTAAAGACAAATAGACACCATTTTGTCTGCGGCCGGATGTCATGACC
386 TTGAGTATCAGGAACAGGCTAAAGACAAATAGACACCATTTTGTCTGCGGCCGGATGTCATGACC
*
598181 TTTGGTGATTAATGCTTCGCCGTGATGAAGAGTGCATTGGCGACGGTTCCGATAGAAAAATAAGT
451 TTTGGTGATTAATGCTTCGCCGTGATGAAGAGTGCATTGGCGACGGTT-CGAT-GAAAAATCAGT
*
598246 TTGCAGGGTTTGTCCTCCCTACTAGGTTTTGGAATTTTCTAAGGCTTGACCTCCTTAGATAGGTG
514 TTGCAGGGTTTGTCCTCCCTACTAGGTTTTGGAATTTTCTAGGGCTTGACCTCCTTAGATAGGTG
* *
598311 TAGATTGATGTACAGTTTGGAACGGATTTTGGAAGAATATGGTCAGTATTTTCCAATGTGCCACT
579 TAGATTGGTGTACAGTTTGGAACGGATTTTGGAAGAATATGGTCAGTATTTTGCAATGTGCCACT
* *
598376 ATGCAGATTCAAGGCCTGCCACACTAGACTTAAAGAAT-ATGAGGATGAAGAGTGATAAAATGAC
644 GTGCAGATTCAAGGCCTGCCACACTAGACTTAAAG-ATGATGAGGATGAAGAGTGATAAAAGGAC
**
598440 CAGTATGTTGATTCACGGCCAACGATATTGGGTTTAAAGATGAGAAAAAGGATGTCAATATGCTG
708 CAGTACATTGATTCACGGCCAACGATATTGGGTTTAAAGATGAGAAAAAGGATGTCAATATGCTG
598505 ATTCACGGTCAGCAACAGTTAGACTTGAAGATGAGAAGAATGCCAATGTGCTGATTCAAGGCCAA
773 ATTCACGGTCAGCAACAGTTAGACTTGAAGATGAGAAGAATGCCAATGTGCTGATTCAAGGCCAA
598570 CGGCATTGGGTTTTAAAAAT
838 CGGCATTGGGTTTTAAAAAT
598590 GATGAAGGCGCCAATATGCTGAGTCAAGGCCAGCGATATTGGACTTAAAGACGAAGGTGCCAATG
1 GATGAAGGCGCCAATATGCTGAGTCAAGGCCAGCGATATTGGACTTAAAGACGAAGGTGCCAATG
*
598655 TGTTGAGTCAAGGCC-AGTGACATTGGACTTAAAGATGAGGTGCCAATATGCTGATTCAAGGCCA
66 TGTTGAGTCAAGGCCAACT-ACATTGGACTTAAAGATGAGGTGCCAATATGCTGATTCAAGGCCA
*
598719 ACTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTAGACTTCAA
130 ACTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTAGACTTAAA
598784 GGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAATATG
195 GGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAATATG
* * ** ** *** *
598849 CTGATTCAAGGCCAGCTATATTAG-ACTTA-A-A-GGGGATAAAGGTGCCA-ATA-T-GCT--G-
260 CTGATTCAAGGCCAGCTATATTCGTCCCCACATATGTCG--AATCCT-CCACCTACTAGCTAGGC
* * * * * * * ** * ** *
598904 ATTCAA-GGCCAGCTATATTCGTCCCCTC-ATATGTCAAATCCTTCACCTACTAGCT-AGGCCCT
322 CTTAAATTG-CTG-AAAATT-GGCCCGACAAAATG--AGGT--GT---CTAC-AGCTCA--CCCT
* * * ** * * * * *** *****
598966 AAATT-GTTAAAAATTG-GCTCGGA-CA-AAATGAGGTGTCTACAGCTGCCCTTCTTTGGCCATT
374 -CATTGGCT-GATTTTGAG-T---ATCAGGAA-CA-G-G-CTAAAG--ACAAAT-AGACACCATT
* * * * * * * * * * *
599027 TCTGAGTATCCGGAACAGGCCAAAGACAAATATACACCATTTTGTCTGCGGTTGCAGGTCAT-GA
426 T-T--GTCTGCGG--CCGG---ATGTC----AT-GACC--TTTG---GTGATT-AATG-CTTCG-
* * ** * * * * * *
599091 CCTTTGGTGATTAATGC-TTTGC--C-G-T-GATGAAGAGTGCA-TTGGCGACGGTTTCGATGGA
470 CC-GTGATGAAGAGTGCATTGGCGACGGTTCGATGAAAAAT-CAGTTTGC-AGGGTTT-G-T---
** *** ** ** *
599149 AAAATGAGTTTGTAGGGTTTGTCCTCCCTACTAGGTTTTGGAATTTTCTAGGGCTTGACCTCCTT
527 --CCT-CCCTACTA-GG-TT-T--T--GGA--A-T---------TTTCTAGGGCTTGACCTCCTT
*
599214 AGATAGGTGTAGATTGGTGTACAGTTTGGAACGGATTTTGAAAGAATATGGTCAGTATTTTGCAA
570 AGATAGGTGTAGATTGGTGTACAGTTTGGAACGGATTTTGGAAGAATATGGTCAGTATTTTGCAA
599279 TGTGCCACTGTGCAGATTCAAGGCCTGCCACACTAGACTTAAAGATGATGAGGATGAAGAGTGAT
635 TGTGCCACTGTGCAGATTCAAGGCCTGCCACACTAGACTTAAAGATGATGAGGATGAAGAGTGAT
599344 AAAAGGACCAGTACATTGATTCACGGCCAACGATATTGGGTTTAAAGATGAGAAAAAGGATGTCA
700 AAAAGGACCAGTACATTGATTCACGGCCAACGATATTGGGTTTAAAGATGAGAAAAAGGATGTCA
599409 ATATGCTGATTCACGGTCAGCAACAGTTAGACTTGAAGATGAGAAGAATGCCAATGTGCTGATTC
765 ATATGCTGATTCACGGTCAGCAACAGTTAGACTTGAAGATGAGAAGAATGCCAATGTGCTGATTC
599474 AAGGCCAACGGCATTGGGTTTTAAAAAT
830 AAGGCCAACGGCATTGGGTTTTAAAAAT
599502 GATGAAGGCGCCAATATGCTGAGTCAAGGCCAGCGATATTGGACTTAAAGACGAAGGTGCCAATG
1 GATGAAGGCGCCAATATGCTGAGTCAAGGCCAGCGATATTGGACTTAAAGACGAAGGTGCCAATG
*
599567 TGTTGAGTCAAGGCC-AGTGACATTGGACTTAAAGATGAGGTGCCAATATGCTGATTCAAGGCCA
66 TGTTGAGTCAAGGCCAACT-ACATTGGACTTAAAGATGAGGTGCCAATATGCTGATTCAAGGCCA
*
599631 ACTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTAGACTTCAA
130 ACTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTAGACTTAAA
599696 GGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAATATG
195 GGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAATATG
* * *** *** *** * *
599761 CTGATTCAAGGCCAGCTATATTAGACTTGA-AGGGGAT--AAAGGTGCCA-ATA-T-GCT--G-A
260 CTGATTCAAGGCCAGCTATATTCGTCCCCACATATG-TCGAATCCT-CCACCTACTAGCTAGGCC
* * * * * * ** * ** *
599817 TTCAA-GGCCAGCTATATTCGTCCCCTC-ATATGTCAAATCCTTCACCTACTAGCT-AGGCCCTA
323 TTAAATTG-CTG-AAAATT-GGCCCGACAAAATG--AGGT--GT---CTAC-AGCTCA--CCCT-
* * * * * * * * * * * *** *****
599879 AATT-GTTAAAAATTGGCCCGGA-CA-AAATGAGGTGTCTACAGCTGCCCTTCTTTGGCCATTTC
374 CATTGGCT--GATTTTG--AGTATCAGGAA-CA-G-G-CTAAAG--ACAAAT-AGACACCATTT-
* * * * * * * * * * *
599941 TGAGTATCCGGAACAGGCCAAAGACAAATATACACCATTTTGTCTGCGGTTGCAGGTCAT-GACC
427 T--GTCTGCGG--CCGG---ATGTC----AT-GACC--TTTG---GTGATT-AATG-CTTCG-CC
* * ** * * * * * *
600005 TTTGGTGATTAATGC-TTTGC--C-G-T-GATGAAGAGTGCA-TTGGCGACGGTTTCGATGGAAA
472 -GTGATGAAGAGTGCATTGGCGACGGTTCGATGAAAAAT-CAGTTTGC-AGGGTTT-G-T-----
** *** ** ** *
600063 AATGAGTTTGTAGGGTTTGTCCTCCCTACTAGGTTTTGGAATTTTCTAGGGCTTGACCTCCTTAG
527 CCT-CCCTACTA-GG-TT-T--T--GGA--A-T---------TTTCTAGGGCTTGACCTCCTTAG
600128 ATAGGTGTAGATTGGTGTACAGTTTGGAACGGATTTTGGAAGAATATGGTCAGTATTTTGCAATG
572 ATAGGTGTAGATTGGTGTACAGTTTGGAACGGATTTTGGAAGAATATGGTCAGTATTTTGCAATG
600193 TGCCACTGTGCAGATTCAAGGCCTGCCACACTAGACTTAAAGATGATGAGGATGAAGAGTGATAA
637 TGCCACTGTGCAGATTCAAGGCCTGCCACACTAGACTTAAAGATGATGAGGATGAAGAGTGATAA
600258 AAGGACCAGTACATTGATTCACGGCCAACGATATTGGGTTTAAAGATGAGAAAAAGGATGTCAAT
702 AAGGACCAGTACATTGATTCACGGCCAACGATATTGGGTTTAAAGATGAGAAAAAGGATGTCAAT
600323 ATGCTGATTCACGGTCAGCAACAGTTAGACTTGAAGATGAGAAGAATGCCAATGTGCTGATTCAA
767 ATGCTGATTCACGGTCAGCAACAGTTAGACTTGAAGATGAGAAGAATGCCAATGTGCTGATTCAA
600388 GGCCAACGGCATTGGGTTTTAAAAAT
832 GGCCAACGGCATTGGGTTTTAAAAAT
* *
600414 GATGAAGGCGCCAATATGCTGAGTCAAGGCCAGCGATATTGGACTTAAAGATGAAAGTGCCAATG
1 GATGAAGGCGCCAATATGCTGAGTCAAGGCCAGCGATATTGGACTTAAAGACGAAGGTGCCAATG
* * * * *
600479 TGTTGAGTTAAGGCCAGCGACATTGGA-TTAAAGATGTGGTGCCAATATGCTGATTCAAGGCCAG
66 TGTTGAGTCAAGGCCAACTACATTGGACTTAAAGATGAGGTGCCAATATGCTGATTCAAGGCCAA
* * *
600543 CTATATTGCACTTAAAGGTGAGGTGCCAATATGCTAATTCAAGGCCAGCTATATTGGACTTAAAG
131 CTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTAGACTTAAAG
* *
600608 GTAAGGTGCCAATATGCTGATTCAAGGCTAGCTATATTGGACTTAAAGGTGATAAAGGTGCCAAT
196 GTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTG----AGGTGCCAAT
* *
600673 ATGCTAATTCAAGGCCAGCTATATTCGTCCCCACATATGCCGAATCCTCCACCTACTAGCTAGGC
257 ATGCTGATTCAAGGCCAGCTATATTCGTCCCCACATATGTCGAATCCTCCACCTACTAGCTAGGC
* * * *
600738 CTTAAATTGGTGAAAATTCGCCCGGACAAAATGAGGTGTCTACAGCTGC-CCCTCATTGGCCGCT
322 CTTAAATTGCTGAAAATTGGCCC-GACAAAATGAGGTGTCTACAGCT-CACCCTCATTGGCTGAT
* * * * *
600802 TCTGAGTATCAGGAACAGGCCAAAGACAAATACACAGCATTTTGTCTGCGGCCGCATGTCATGAC
385 TTTGAGTATCAGGAACAGGCTAAAGACAAATAGACACCATTTTGTCTGCGGCCGGATGTCATGAC
* *
600867 CTTTGGTGATTAATGCTTCGCCGTGATGAAGAGTGCATTCGCGACGGTTCCGATGGAAAAATGAG
450 CTTTGGTGATTAATGCTTCGCCGTGATGAAGAGTGCATTGGCGACGGTT-CGAT-GAAAAATCAG
* * * * *
600932 TTTGTAGGGTTTGTCCTCCCTACTAGGTTTTGAAATTTTCTAAGGCTTGACCACCTTAGAAAGGT
513 TTTGCAGGGTTTGTCCTCCCTACTAGGTTTTGGAATTTTCTAGGGCTTGACCTCCTTAGATAGGT
600997 GTAGATTGGTGTACAGTTTGGAACGGATTTTGGAAGAATATGGTCAGTATTTTGCAATGTGCCAC
578 GTAGATTGGTGTACAGTTTGGAACGGATTTTGGAAGAATATGGTCAGTATTTTGCAATGTGCCAC
* *
601062 TGTGCAGATTCAAGGCGTGCCACACTAGGCTTAAAGATGATGAGGATGAAGAGTGATAAAAGGAC
643 TGTGCAGATTCAAGGCCTGCCACACTAGACTTAAAGATGATGAGGATGAAGAGTGATAAAAGGAC
* * * *
601127 CAGTACGTTGATTTACGGCCAACGATATTAGGTTTAAAGATTAGAAAAAGGATGTCAATATGCTG
708 CAGTACATTGATTCACGGCCAACGATATTGGGTTTAAAGATGAGAAAAAGGATGTCAATATGCTG
*
601192 ATTCACAGTCAGCAACAGTTAGACTTGAAGATGAGAAGAATGCCAATGTGCTGATTCAAGGCCAA
773 ATTCACGGTCAGCAACAGTTAGACTTGAAGATGAGAAGAATGCCAATGTGCTGATTCAAGGCCAA
601257 CGGCATTGGGTTTTAAAAAT
838 CGGCATTGGGTTTTAAAAAT
* *
601277 GATAAAGGCGCCAATATGCTGAGTCAAGGCCAGCAATATTGGACTTAAAGACGAAGGTGCCAATG
1 GATGAAGGCGCCAATATGCTGAGTCAAGGCCAGCGATATTGGACTTAAAGACGAAGGTGCCAATG
* * *
601342 TGTTGAGTCAAGGCCAGCGACATTGGACTTAAAGATGAGGTGCCACTATGCTGATTCAAGGCCAA
66 TGTTGAGTCAAGGCCAACTACATTGGACTTAAAGATGAGGTGCCAATATGCTGATTCAAGGCCAA
*
601407 CTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTTAAGGCCAGCTATATTAGACTTAAAG
131 CTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTAGACTTAAAG
601472 GTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGC
196 GTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGC
** ** * *** * * *
601537 TGATTCAAGGCCAGCTATATT-GGACTTA-A-AGGT-GATAAAGGTGCCA-ATATGCTGATTCAA
261 TGATTCAAGGCCAGCTATATTCGTCCCCACATATGTCG--AATCCT-CCACCTA--CT-A-GCTA
* * * * * * * * * * *
601597 GGCCAGCTATATTTGACTTAAAGGTGATAAAGGTGCCAACATGCTGATTCAAGGCCAG-CTATAT
319 GGCC--TTA-AATTG-CTGAAA----AT--TGG-CCCGACA----AAAT-GAGG--TGTCTACA-
* * * * ** *
601661 TCGTC-CCCACATATGTC-GAATCCTCCACCTA-CTA-G--CTAGGCCCTAAATTGTTGA-AAAT
365 GC-TCACCCTCAT-TGGCTG-AT-TTTGA-GTATC-AGGAAC-AGG--CTAAA-----GACAAA-
** ** * * ** * * * * *
601719 TGGCCCAGACAAAATGAGGTGTCTACAGCTC--ACCCTCTTTGGCCGTTT-CTGAGTATCAGGAA
415 T-----AGACACCAT--TTTGTCTGCGGC-CGGA-TGTC-ATGACC-TTTGGTGA-T-TAATG--
** ** ** *** * * *** * *
601781 C-AGGCCAAAGACAAATAGACACCATTTTGTCTGCGGCCGCATGTCATGACCTTTGGTGATTAAT
465 CTTCGCC-GTGA-TGA-AGAGTGCA--TTG---GC-GACG-GT-TC--GA----TGAAAAATCA-
* * *** * ** * * *
601845 GCTTCGCCGTGATGAAGAGTGCATTGGCGAC--GGTTTCGATGGAAAAATGAGTTTGTAGGGTTT
512 G-TTTGCAG-G--G-TTTGT-C-CTCCCTACTAGGTTT---TGG---AAT---TTTCTAGGGCTT
601908 GTCCTCCCTACTAGGTTTTGGAATTTTCTAGGGCTTGACCTCCTTAGATAGGTGTAGATTGGTGT
561 G------------------------------------ACCTCCTTAGATAGGTGTAGATTGGTGT
601973 ACAGTTTGGAACGGATTTTGGAAGAATATGGTCAGTATTTTGCAATGTGCCACTGTGCAGATTCA
590 ACAGTTTGGAACGGATTTTGGAAGAATATGGTCAGTATTTTGCAATGTGCCACTGTGCAGATTCA
*
602038 AGGCCTGCCACACTGGACTTAAAGATGATGAGGATGAAGAGTGATAAAAGGACCAGTACATTGAT
655 AGGCCTGCCACACTAGACTTAAAGATGATGAGGATGAAGAGTGATAAAAGGACCAGTACATTGAT
*
602103 TCATGGCCAACGATATTGGGTTTAAAGATGAGAAAAAGGATGTCAATATGCTGATTCACGGTCAG
720 TCACGGCCAACGATATTGGGTTTAAAGATGAGAAAAAGGATGTCAATATGCTGATTCACGGTCAG
* * *
602168 CAACAGTTAGACTTGAAGATGAGAAGAATGCTAATGTTCTGATTCAAAGCCAACGGCATTGGGTT
785 CAACAGTTAGACTTGAAGATGAGAAGAATGCCAATGTGCTGATTCAAGGCCAACGGCATTGGGTT
*
602233 TTAAAAAA
850 TTAAAAAT
* * * * * *
602241 GATGAAGGTGCCAATGTGTTGAGTCAAGGCCAGCGACATTGGACTTAAAGATG-AGGTGCCAATA
1 GATGAAGGCGCCAATATGCTGAGTCAAGGCCAGCGATATTGGACTTAAAGACGAAGGTGCCAATG
* * * *
602305 TGTTGATTCAAGGCCAACTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAG
66 TGTTGAGTCAAGGCCAACTACATTGGACTTAAAGATGAGGTGCCAATATGCTGATTCAAGGCCAA
* * *
602370 CTATATTGGACATAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACCTAAAG
131 CTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTAGACTTAAAG
602435 GTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGATAAAGGTGCCAAT
196 GTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTG----AGGTGCCAAT
602500 ATGCTGATTCAAGGCCAGCTATATTCGTCCCCACATATGTCGAATCCTCCACCTACTAGCTAGGC
257 ATGCTGATTCAAGGCCAGCTATATTCGTCCCCACATATGTCGAATCCTCCACCTACTAGCTAGGC
* * * *
602565 CCTAAATTGTTGAAAATTGGCCCGGACAAAATGAGGTGTCTACAGCTCACCCTCTTTGGCTGTTT
322 CTTAAATTGCTGAAAATTGGCCC-GACAAAATGAGGTGTCTACAGCTCACCCTCATTGGCTGATT
*
602630 TTGAGTATCAGGAACAGGCCAAAGACAAATAGACACCATTTTGTCTGCGGCCGGATGTCATGACC
386 TTGAGTATCAGGAACAGGCTAAAGACAAATAGACACCATTTTGTCTGCGGCCGGATGTCATGACC
*
602695 TTTGGTGATTAATGCTTCGCCGTGATGAAGAGTGCATTGGCGACGGTTCCGATAGAAAAATAAGT
451 TTTGGTGATTAATGCTTCGCCGTGATGAAGAGTGCATTGGCGACGGTT-CGAT-GAAAAATCAGT
*
602760 TTGCAGGGTTTGTCCTCCCTACTAGGTTTTGGAATTTTCTAAGGCTTGACCTCCTTAGATAGGTG
514 TTGCAGGGTTTGTCCTCCCTACTAGGTTTTGGAATTTTCTAGGGCTTGACCTCCTTAGATAGGTG
*
602825 TAGATTGATGTACAGTTTGGAACGGATTTTGGAAGAATATGGTCAGTATTTTGCAATGTGCCACT
579 TAGATTGGTGTACAGTTTGGAACGGATTTTGGAAGAATATGGTCAGTATTTTGCAATGTGCCACT
* *
602890 ATGCAGATTCAAGGCCTGCCACACTAGACTTAAAGAAT-ATGAGGATGAAGAGTGATAAAATGAC
644 GTGCAGATTCAAGGCCTGCCACACTAGACTTAAAG-ATGATGAGGATGAAGAGTGATAAAAGGAC
**
602954 CAGTATGTTGATTCACGGCCAACGATATTGGGTTTAAAGATGAGAAAAAGGATGTCAATATGCTG
708 CAGTACATTGATTCACGGCCAACGATATTGGGTTTAAAGATGAGAAAAAGGATGTCAATATGCTG
603019 ATTCACGGTCAGCAACAGTTAGACTTGAAGATGAGAAGAATGCCAATGTGCTGATTCAAGGCCAA
773 ATTCACGGTCAGCAACAGTTAGACTTGAAGATGAGAAGAATGCCAATGTGCTGATTCAAGGCCAA
603084 CGGCATTGGGTTTTAAAAAT
838 CGGCATTGGGTTTTAAAAAT
603104 GATGAAGGCGCCAATATGCTGAGTCAAGGCCAGCGATATTGGACTTAAAGACGAAGGTGCCAATG
1 GATGAAGGCGCCAATATGCTGAGTCAAGGCCAGCGATATTGGACTTAAAGACGAAGGTGCCAATG
*
603169 TGTTGAGTCAAGGCC-AGTGACATTGGACTTAAAGATGAGGTGCCAATATGCTGATTCAAGGCCA
66 TGTTGAGTCAAGGCCAACT-ACATTGGACTTAAAGATGAGGTGCCAATATGCTGATTCAAGGCCA
*
603233 ACTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTAGACTTCAA
130 ACTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTAGACTTAAA
603298 GGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAATATG
195 GGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAATATG
** ** * * * * *
603363 CTGATTCAAGGCCAGCTATATT-GGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCC-AG
260 CTGATTCAAGGCCAGCTATATTCGTCCCCACA--T-A--TGTCGA-AT-C---CTCCA--CCTA-
** * * ** * ** ** * * * * *
603426 CTATATTGGACTTAAA--GGGGATAAA-GGTGCCAATATGCTGATTCAAGGCCAG-CTATATTCG
312 CTAGCTAGGCCTTAAATTGCTGA-AAATTG-GCC-CGA--CAAAAT-GAGG--TGTCTACA-GC-
* ** * * * *
603487 TC-CCCTCATATGTCAAATCCTTCACCTA-CTA-G--CTAGGCCCTAAATTGTTAAAAATTGGCC
367 TCACCCTCAT-TGGCTGAT-TTTGA-GTATC-AGGAAC-AGG--CTAAA--G--ACAAA-T----
* ** ** * * * ** * * * * ***
603547 CGGACAAAATGAGGTGTCTACAGCTGCCCT-TCTTTGGCCATTT-CTGAGT-ATCCGGAACAGGC
416 -AGACACCAT--TTTGTCTGCGGCCG-GATGTC-ATGACC-TTTGGTGATTAAT--GCTTC--GC
** ** * * * ** * *
603609 CAAAGACAAATA-TACACCATTTTGTCTG-CGGTTGCAGGTCATGACCTTTGGTGATTAATGCTT
471 C-GTGATGAAGAGT---GCA--TTGGC-GACGGTT-C--G--ATGA-------AAAATCA-G-TT
* ** ** **
603672 TGCCGTGATGAAGAGTGCATTGGCGACGGTTTCGATGGAAAAATGAGTTTGTAGGGTTTGTCCTC
515 TG-C---A-G--G-GT---TTGTC--C----TCCCT---ACTA-G-GTTT-T-GGAATT-T--T-
603737 CCTACTAGGTTTTGGAATTTTCTAGGGCTTGACCTCCTTAGATAGGTGTAGATTGGTGTACAGTT
552 ---------------------CTAGGGCTTGACCTCCTTAGATAGGTGTAGATTGGTGTACAGTT
603802 TGGAACGGATTTTGGAAGAATATGGTCAGTATTTTGCAATGTGCCACTGTGCAGATTCAAGGCCT
596 TGGAACGGATTTTGGAAGAATATGGTCAGTATTTTGCAATGTGCCACTGTGCAGATTCAAGGCCT
603867 GCCACACTAGACTTAAAGATGATGAGGATGAAGAGTGATAAAAGGACCAGTACATTGATTCACGG
661 GCCACACTAGACTTAAAGATGATGAGGATGAAGAGTGATAAAAGGACCAGTACATTGATTCACGG
603932 CCAACGATATTGGGTTTAAAGATGAGAAAAAGGATGTCAATATGCTGATTCACGGTCAGCAACAG
726 CCAACGATATTGGGTTTAAAGATGAGAAAAAGGATGTCAATATGCTGATTCACGGTCAGCAACAG
603997 TTAGACTTGAAGATGAGAAGAATGCCAATGTGCTGATTCAAGGCCAACGGCATTGGGTTTTAAAA
791 TTAGACTTGAAGATGAGAAGAATGCCAATGTGCTGATTCAAGGCCAACGGCATTGGGTTTTAAAA
604062 AT
856 AT
*
604064 GATGAAGGCGCCAATATGCTGAGTCAAGGCCAGCGATATTGGACTTAAAGACGAAAGTGCCAATG
1 GATGAAGGCGCCAATATGCTGAGTCAAGGCCAGCGATATTGGACTTAAAGACGAAGGTGCCAATG
* * * * *
604129 TGTTGAGTTAAGGCCAGCGACATTGGA-TTAAAGATGTGGTGCCAATATGCTGATTCAAGGCCAG
66 TGTTGAGTCAAGGCCAACTACATTGGACTTAAAGATGAGGTGCCAATATGCTGATTCAAGGCCAA
* * * *
604193 CTATATTGCACTTAAAGGTGAGGTGCCAATATACTGATTCAAGGCCAGCTATACTGGACTTAAAG
131 CTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTAGACTTAAAG
* *
604258 GTAAGGTGCCAATATGCTGATTCAAGGCTAGCTATATTGGACTTAAAGGTGATAAAGGTGCCAAT
196 GTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTG----AGGTGCCAAT
* *
604323 ATGCTAATTCAAGGCCAGCTATATTCGTCCCCACATATGCCGAATCCTCCACCTACTAGCTAGGC
257 ATGCTGATTCAAGGCCAGCTATATTCGTCCCCACATATGTCGAATCCTCCACCTACTAGCTAGGC
* * * * * *
604388 CTTAAATTGGTGAAAATTCGCTCGGACAAAATGAGGTGTCTACAACTGC-CCCTCATTGGCCGCT
322 CTTAAATTGCTGAAAATTGGC-CCGACAAAATGAGGTGTCTACAGCT-CACCCTCATTGGCTGAT
* * * * *
604452 TCTGAGTATCAGGAACAGGCCAAAGACAAATACACAGCATTTTGTCTGCGGCCGCATGTCATGAC
385 TTTGAGTATCAGGAACAGGCTAAAGACAAATAGACACCATTTTGTCTGCGGCCGGATGTCATGAC
* *
604517 CTTTGGTGATTAATGCTTCGCCGTGATGAAGAGTGCATTCGCGACGGTTCCGATGGAAAAATGAG
450 CTTTGGTGATTAATGCTTCGCCGTGATGAAGAGTGCATTGGCGACGGTT-CGAT-GAAAAATCAG
* * * * *
604582 TTTGTAGGGTTTGTCCTCCCTACTAGGTTTTGAAATTTTCTAAGGCTTGACCACCTTAGAAAGGT
513 TTTGCAGGGTTTGTCCTCCCTACTAGGTTTTGGAATTTTCTAGGGCTTGACCTCCTTAGATAGGT
604647 GTAGATTGGTGTACAGTTTGGAACGGATTTTGGAAGAATATGGTCAGTATTTTGCAATGTGCCAC
578 GTAGATTGGTGTACAGTTTGGAACGGATTTTGGAAGAATATGGTCAGTATTTTGCAATGTGCCAC
* *
604712 TGTGCAGATTCAAGGCGTGCCACACTAGGCTTAAAGATGATGAGGATGAAGAGTGATAAAAGGAC
643 TGTGCAGATTCAAGGCCTGCCACACTAGACTTAAAGATGATGAGGATGAAGAGTGATAAAAGGAC
* * * *
604777 CAGTACGTTGATTTACGGCCAACGATATTAGGTTTAAAGATTAGAAAAAGGATGTCAATATGCTG
708 CAGTACATTGATTCACGGCCAACGATATTGGGTTTAAAGATGAGAAAAAGGATGTCAATATGCTG
*
604842 ATTCACAGTCAGCAACAGTTAGACTTGAAGATGAGAAGAATGCCAATGTGCTGATTCAAGGCCAA
773 ATTCACGGTCAGCAACAGTTAGACTTGAAGATGAGAAGAATGCCAATGTGCTGATTCAAGGCCAA
604907 CGGCATTGGGTTTTAAAAAT
838 CGGCATTGGGTTTTAAAAAT
*
604927 GATGAAGGCGCCAATATGCTGAGTCAAGGCCAGCAATATTGGACTTAAAGACGAAGGTGCCAATG
1 GATGAAGGCGCCAATATGCTGAGTCAAGGCCAGCGATATTGGACTTAAAGACGAAGGTGCCAATG
* *
604992 TGTTGAGTCAAGGCCAGCGACATTGGACTTAAAGATGAGGTGCCAATATGCTGATTCAAGGCCAA
66 TGTTGAGTCAAGGCCAACTACATTGGACTTAAAGATGAGGTGCCAATATGCTGATTCAAGGCCAA
* *
605057 CTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAA---CAACTATATTGGACTTAAAG
131 CTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTAGACTTAAAG
*
605119 GTGAGGTGCCAAAATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGC
196 GTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGC
* ** ** * *** * * *
605184 TGATTCAAGGCTAGCTATATT-GGACTTA-A-AGGT-GATAAAGGTGCCA-ATATGCTGATACAA
261 TGATTCAAGGCCAGCTATATTCGTCCCCACATATGTCG--AATCCT-CCACCTA--CT-A-GCTA
* ** * * * * *
605244 GGCC----A--GCT--ATATTCATCCCCAC-ATATGTCGAATCCTCCACCTACTAGCT-AGGCCC
319 GGCCTTAAATTGCTGAAAATT-GGCCCGACAAAATG-AG-GT-GT----CTAC-AGCTCA--CCC
* ** * * * ** ** *
605299 TAAATTGG-TGAAAATTG-G--CCCGGACAAAATGTGGTCT-CTG-CAGCT-G-C-CCCTCTTTG
373 T-CATTGGCTG-ATTTTGAGTATCAGG--AACA---GG-CTAAAGACAAATAGACACCAT-TTT-
* * * * * * ***** * *
605355 GCCGGTTCTGAGTATCAGGAATAGGCTAAAGACAAATATACACCATT-TTGTCTGCGGCCGCATG
428 ----G-TCTGCG--GCCGG-AT--G-TCATGAC--CT-TTGGTGATTAATG-CTTC-GCCG--TG
* * ** * * * **
605419 TCATGACCTTTG-GTG-ATTAATGCTTCGCCG-T-GATGAAGAGTGCA-TTGGCGACAGTTCCGA
475 --ATGA----AGAGTGCATT--GGCGACG--GTTCGATGAAAAAT-CAGTTTGC-AGGGTT----
** *** * * * *
605479 TGGAAAAATGAGTTTGTAGGGTTTGTCCTCCCTACTAGGTTTTGGAATTTTCTAAGGCTTGACCT
524 T-G-----T-CCTCCCTA---CTAG--GT-----------TTTGGAATTTTCTAGGGCTTGACCT
605544 CCTTAGATAGGTGTAGATTGGTGTACAGTTTGGAACGGATTTTGGAAGAATATGGTCAGTATTTT
566 CCTTAGATAGGTGTAGATTGGTGTACAGTTTGGAACGGATTTTGGAAGAATATGGTCAGTATTTT
* *
605609 GCTATGTGCCATTGTGCAGATTCAAGGCCTGCCACACTAGACTTAAAGATGATGAGGATGAAGAG
631 GCAATGTGCCACTGTGCAGATTCAAGGCCTGCCACACTAGACTTAAAGATGATGAGGATGAAGAG
* * * * *
605674 TGATAAAAGGACTAGTACGTTGATTCGCGGCCAACGATATTAGGTTTAAAGATGAGAAAGAGGAT
696 TGATAAAAGGACCAGTACATTGATTCACGGCCAACGATATTGGGTTTAAAGATGAGAAAAAGGAT
*
605739 GTCAATATGCTGATTCACAGTCAGCAACAGTTAGACTTGAAGATGAGAAGAATGCCAATGTGCTG
761 GTCAATATGCTGATTCACGGTCAGCAACAGTTAGACTTGAAGATGAGAAGAATGCCAATGTGCTG
605804 ATTCAAGGCCAACGGCATTGGGTTTTAAAAAT
826 ATTCAAGGCCAACGGCATTGGGTTTTAAAAAT
* * *
605836 GATGAAGGTGCCAATATGCTGAGTCAAGGCTAGCAATATTGGACTTAAAGACGAAGGTGCCAATG
1 GATGAAGGCGCCAATATGCTGAGTCAAGGCCAGCGATATTGGACTTAAAGACGAAGGTGCCAATG
* *
605901 TGTTGAGTCAAGGCCAGCGACATTGGACTTAAAGATGAGGTGCCAATATGCTGATTCAAGGCCAA
66 TGTTGAGTCAAGGCCAACTACATTGGACTTAAAGATGAGGTGCCAATATGCTGATTCAAGGCCAA
* *
605966 CTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAA---CAGCTATATTTGACATAAAG
131 CTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTAGACTTAAAG
*
606028 GTGAGGTGCCAAAATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGC
196 GTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGC
** ** * * * * * * *
606093 TGATTCAAGGCCAGCTATATT-GGACTTAAAGGTGAGGTGCCAAT-ATGCTGATTCAAGGCTAGC
261 TGATTCAAGGCCAGCTATATTCGTCCCCACA--T-ATGT-CGAATCCT-C-CA-CCTA--CTAGC
* * * * * *** * ** * * *
606156 TATATTGGACTT-AA-CGGTGATAAAGGTGTCAATATGCTAATACAAGGCCAG-CTATATTCGTC
317 --TA--GGCCTTAAATTGCTGA-AAA-TTGGCCCGA--C-AAAATGAGG--TGTCTACA-GC-TC
* * * * * *** * * * ** **
606218 -CCCACATATGTC-GA--ATCA-T-CCACCTACTA-GCT-AGGCCCTAAATTGTTGA--AAATTG
369 ACCCTCAT-TGGCTGATTTTGAGTATCAGGAAC-AGGCTAAAG-AC-AAATAG-ACACCATTTTG
* * * * ** * ** ** * * *
606273 GC-CCGGACAAAATGAGGTGTC-T-ACAGTTGCCCCTCTTTACCCGTTTCTG-AGT-AT-TAGA-
429 TCTGCGG-C----CG-GATGTCATGACCTTTG---GTGATTA-ATGCTTC-GCCGTGATGAAGAG
** * ** * * * * * * ** * ** **
606331 AACA-T-GCTAAAG-ACAGAT-AGACACCATTTTGTCTGCGG-CCG-CATGTC-A-T-GACCTTT
483 TGCATTGGCGACGGTTC-GATGAAAAATCAGTTTG-CAG-GGTTTGTCCTCCCTACTAG-GTTTT
** ** * * * * * * *
606387 GG--TGAT-TAATGCTT---CGCCGT-GATGAAGAGT-GCATTGGCG-AC-GGTT----CCGA--
544 GGAATTTTCTAGGGCTTGACCTCCTTAGAT-AGGTGTAG-ATTGGTGTACAGTTTGGAACGGATT
** * * * *
606436 -TGGAA-AA-ATGAGTTTGTAGGGTTTG---TCCTCCCTACTAGGTTTTG-GGATTTTCTAAGGC
607 TTGGAAGAATATG-GTCAGTA--TTTTGCAAT-GTGCC-ACT--G---TGCAGA--TTC-AAGGC
* * ** ** * * * * *
606494 TTGACCTCTTTAGA-TAGGTGTAGATTGGTGTAGAGTTTGGAACGGATTTTGGAAAAATATGG-T
659 CTG-CCACACTAGACT---TAAAGA-TGATG-AG-G-AT-GAA--GA--GT-GATAAA-A-GGAC
*** * * ***
606557 CAGTGTTTTGCAATGTGCCACTGTGCAGATTCAAGGCCTGCCACACTGGACATAAAGATGATGAG
708 CAGTACATTG--AT-T--CAC-G-GC-----CAA---C-G--ATATTGGGTTTAAAGATGA-GA-
* * * * * * * * * ** *
606622 GATGAAGAGTGATAATAGGACCAGTACGTTGATTCACGGCCAACGATA-TTGGGTTTAAAGATGA
753 -A--AA-AG-G---AT--G-TCAATATGCTGATTCACGGTCAGCAACAGTTAGACTTGAAGATGA
* * * * * * ** * ** * *
606686 GAAAAAGGATGTCAATATGCTGATTCACGGTCAGCAACAGTT-AGACTTGAAGAT
807 G---AAGAATGCCAATGTGCTGATTCAAGGCCAACGGCA-TTGGGTTTTAAAAAT
** * * * ** * *
606740 GA-GAAGAATGCCAATGTGCTGATTCAAGGCCAACGGCATTGGGTA-TTAAAAATGATGAAGGCG
1 GATGAAG-GCGCCAATATGCTGAGTCAAGGCCAGCGATATT-GG-ACTT--AAA-GACGAAGGTG
* * * * * * * * *
606803 CCAATATGCTGAGTCAAGGCCAGCGATATTGGACTTAAAGACGAAGGTGCCAATGTGTTGAGTCA
60 CCAATGTGTTGAGTCAAGGCCAACTACATTGGACTTAAAGATG-AGGTGCCAATATGCTGATTCA
* * * * * * *
606868 AGGCCAGCGACATTGGACTCAAAGGTGAGGTGCCAATATTCTGATTCAAGGCCAACTATATTGGA
124 AGGCCAACTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTAGA
* * *
606933 CTTAAAGGTGAGGTACCACTATGCTAATTCAAGGCCAGCTATATTGGACTTAAAGGTGATAAAGG
189 CTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTG----AGG
* * *
606998 TGCCAATATGCTGATTCAAAGGCCAGCTATATTCGTCCCCATATATGTCGAATCCTCTACCAACT
250 TGCCAATATGCTGATTC-AAGGCCAGCTATATTCGTCCCCACATATGTCGAATCCTCCACCTACT
* * * * *
607063 AGCTAGGCCCTAAATTGTTAAAAATTGGCCCGGACAAAATGAGGTGTCTACAGTTGC-CCCTCTT
314 AGCTAGGCCTTAAATTGCTGAAAATTGGCCC-GACAAAATGAGGTGTCTACAGCT-CACCCTCAT
* * * *
607127 TGGCTG-TTTCTGAGTATCAGGAACATGCCAAAGACAAATAGACACCATTTTGTCTGCGGTCGCA
377 TGGCTGATTT-TGAGTATCAGGAACAGGCTAAAGACAAATAGACACCATTTTGTCTGCGGCCGGA
*
607191 TGTCATGACCTTTGGTGATTAATGCTTCGCCGTGATGAAGAGTGCATTGGCGACGGTTCCGAAGG
441 TGTCATGACCTTTGGTGATTAATGCTTCGCCGTGATGAAGAGTGCATTGGCGACGGTT-CG-ATG
* * ** * * *
607256 AAAAATGAGTTTGTAGGGTTTGTCCTCCGGACTAGGTTTTGGGATTTTCTAAGGCTTGACCTCTT
504 AAAAATCAGTTTGCAGGGTTTGTCCTCCCTACTAGGTTTTGGAATTTTCTAGGGCTTGACCTCCT
*
607321 TAGATAGGTGTAGATTGGTGTAGAGTTTGGAACGGATTTTGGAAGAATATGGTCAGTATTTTGCA
569 TAGATAGGTGTAGATTGGTGTACAGTTTGGAACGGATTTTGGAAGAATATGGTCAGTATTTTGCA
*
607386 ATGTGCCA-TAGTGCAGATTCAAGGCCTGCCACACTGGACTTAAAGATGATGAGGATGAAGAGTG
634 ATGTGCCACT-GTGCAGATTCAAGGCCTGCCACACTAGACTTAAAGATGATGAGGATGAAGAGTG
** ** *
607450 ATAAAATAACCAGTATGTTGATTCACGGCCAACGATATAGGGTTTAAAGATGAGAAAAAGGATGT
698 ATAAAAGGACCAGTACATTGATTCACGGCCAACGATATTGGGTTTAAAGATGAGAAAAAGGATGT
607515 CAATATGCTGATTCACGGTCAGCAACAGTTAGACTTGAAGATGAGAAGAATGCCAATGTGCTGAT
763 CAATATGCTGATTCACGGTCAGCAACAGTTAGACTTGAAGATGAGAAGAATGCCAATGTGCTGAT
607580 TCAAGGCCAACGGCATTGGGTTTTAAAAAT
828 TCAAGGCCAACGGCATTGGGTTTTAAAAAT
*
607610 GATGAAGGCGCCAATATGCTGAGTCAAGGCCAGCGATATTGGACTTAAAGACAAAGGTGCCAATG
1 GATGAAGGCGCCAATATGCTGAGTCAAGGCCAGCGATATTGGACTTAAAGACGAAGGTGCCAATG
* * *
607675 TGTTGAGTCAAGGCCAGCGACATTAGACTTAAAGATGAGGTGCCAATATGCTGATTCAAGGCCAA
66 TGTTGAGTCAAGGCCAACTACATTGGACTTAAAGATGAGGTGCCAATATGCTGATTCAAGGCCAA
* *
607740 CTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTCAAG
131 CTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTAGACTTAAAG
* *
607805 GTGAGGTGCCAAAATGCTGATTCAAGGCCAGCTATATTGGACATAAAGGTGATAAAGGTGCCAAT
196 GTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTG----AGGTGCCAAT
*
607870 ATGCTGATTCAAGGCCAGCTATATTCGTCCCCGCATATGTCGAATCCTCCACCTACTAGCTAGGC
257 ATGCTGATTCAAGGCCAGCTATATTCGTCCCCACATATGTCGAATCCTCCACCTACTAGCTAGGC
* * * * *
607935 CCTAAATTGTTAAAAATTGGCCCGGACAAAATGAGGTGTCTACAGCT-ACCCCTCTTTGGCCG-T
322 CTTAAATTGCTGAAAATTGGCCC-GACAAAATGAGGTGTCTACAGCTCA-CCCTCATTGGCTGAT
* * * * * * *
607998 TTCTGAGTATCAAGAATAGGCTAAAGACAAATATACACCATTTTGTTTGTGGCCGCATGTCATAA
385 TT-TGAGTATCAGGAACAGGCTAAAGACAAATAGACACCATTTTGTCTGCGGCCGGATGTCATGA
* *
608063 CCTTTGGTGATTAATGCTTCGCCGTGATGAAGAGTGCATTGGCAACGGTTCTGATGGAAAAATGA
449 CCTTTGGTGATTAATGCTTCGCCGTGATGAAGAGTGCATTGGCGACGGTTC-GAT-GAAAAATCA
* * *
608128 GTTTGTAGTGTTTGTCCTCCCTACTAGGTTTTGGAATTTTCTAAGGCTTGACCTCCTTAGATAGG
512 GTTTGCAGGGTTTGTCCTCCCTACTAGGTTTTGGAATTTTCTAGGGCTTGACCTCCTTAGATAGG
* *
608193 TGTAGATTGGTGTACAATTTGGAATGGATTTTGGAAGAATATGGTCAGTATTTTGCAATGTGCCA
577 TGTAGATTGGTGTACAGTTTGGAACGGATTTTGGAAGAATATGGTCAGTATTTTGCAATGTGCCA
608258 CTGTGCAGATTCAAGGCCTGCCACACTAGACTTAAAGATGATGAGGATGAAGAGTGATAAAAGGA
642 CTGTGCAGATTCAAGGCCTGCCACACTAGACTTAAAGATGATGAGGATGAAGAGTGATAAAAGGA
* * * * *
608323 CCAGTACGTTGATTCACGGCCAATGATATTAGGTTTAAAAATGAGAAAAAAGATGTCAATATGCT
707 CCAGTACATTGATTCACGGCCAACGATATTGGGTTTAAAGATGAGAAAAAGGATGTCAATATGCT
* * *
608388 GATTCACAGTCAGCAACAGTTAGACTGGAAGATCAGAAGAATGCCAATGTGCTGATTCAAGGCCA
772 GATTCACGGTCAGCAACAGTTAGACTTGAAGATGAGAAGAATGCCAATGTGCTGATTCAAGGCCA
608453 ACGGCATTGGGTTTTAAAAAT
837 ACGGCATTGGGTTTTAAAAAT
* *
608474 GTTGAAGGCGCCAATATGCTGAGTCAAGGCCAGCAATATTGGACTTAAAGACGAAGGTGCCAATG
1 GATGAAGGCGCCAATATGCTGAGTCAAGGCCAGCGATATTGGACTTAAAGACGAAGGTGCCAATG
* * *
608539 TGTTGAGTCAAGGCCAGCGACATTAGACTTAAAGATGAGGTGCCAATATGCTGATTCAAGGCCAA
66 TGTTGAGTCAAGGCCAACTACATTGGACTTAAAGATGAGGTGCCAATATGCTGATTCAAGGCCAA
* *
608604 CTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCGAGGCCAGCTATATTGGACTTAAAG
131 CTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTAGACTTAAAG
* * *
608669 GTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGAACTTAAAGGTGAGGTGCCAAAAGGC
196 GTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGC
*
608734 TGATTCAAGGCCAGTTATATT
261 TGATTCAAGGCCAGCTATATT
608755 GGACTTAAAG
Statistics
Matches: 9130, Mismatches: 1175, Indels: 1452
0.78 0.10 0.12
Matches are distributed among these distances:
848 4 0.00
849 10 0.00
850 11 0.00
851 12 0.00
852 4 0.00
853 16 0.00
854 10 0.00
855 15 0.00
856 15 0.00
857 58 0.01
858 31 0.00
859 48 0.01
860 155 0.02
861 79 0.01
862 28 0.00
863 1796 0.20
864 1380 0.15
865 176 0.02
866 56 0.01
867 185 0.02
868 8 0.00
869 14 0.00
870 80 0.01
871 35 0.00
872 30 0.00
873 25 0.00
874 18 0.00
875 16 0.00
876 17 0.00
877 13 0.00
878 15 0.00
879 21 0.00
880 13 0.00
881 16 0.00
882 27 0.00
883 23 0.00
884 23 0.00
885 28 0.00
886 15 0.00
887 10 0.00
888 13 0.00
889 24 0.00
890 33 0.00
891 32 0.00
892 27 0.00
893 7 0.00
894 20 0.00
895 24 0.00
896 21 0.00
897 6 0.00
898 9 0.00
899 36 0.00
900 11 0.00
901 43 0.00
902 37 0.00
903 28 0.00
904 88 0.01
905 24 0.00
906 31 0.00
907 37 0.00
908 64 0.01
909 670 0.07
910 18 0.00
911 162 0.02
912 1358 0.15
913 30 0.00
914 36 0.00
915 67 0.01
916 46 0.01
917 35 0.00
918 19 0.00
919 18 0.00
920 15 0.00
921 21 0.00
922 26 0.00
923 11 0.00
924 20 0.00
925 18 0.00
926 12 0.00
927 2 0.00
928 22 0.00
929 10 0.00
930 3 0.00
931 11 0.00
932 19 0.00
933 27 0.00
934 2 0.00
935 16 0.00
936 1 0.00
938 1 0.00
940 4 0.00
941 7 0.00
943 1 0.00
945 14 0.00
946 8 0.00
947 17 0.00
948 20 0.00
949 8 0.00
950 6 0.00
951 5 0.00
952 14 0.00
953 7 0.00
954 10 0.00
955 5 0.00
957 3 0.00
958 2 0.00
959 151 0.02
960 383 0.04
961 5 0.00
962 5 0.00
963 217 0.02
964 331 0.04
965 6 0.00
966 1 0.00
967 37 0.00
968 6 0.00
969 6 0.00
970 3 0.00
971 1 0.00
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.27
Consensus pattern (857 bp):
GATGAAGGCGCCAATATGCTGAGTCAAGGCCAGCGATATTGGACTTAAAGACGAAGGTGCCAATG
TGTTGAGTCAAGGCCAACTACATTGGACTTAAAGATGAGGTGCCAATATGCTGATTCAAGGCCAA
CTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTAGACTTAAAG
GTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGC
TGATTCAAGGCCAGCTATATTCGTCCCCACATATGTCGAATCCTCCACCTACTAGCTAGGCCTTA
AATTGCTGAAAATTGGCCCGACAAAATGAGGTGTCTACAGCTCACCCTCATTGGCTGATTTTGAG
TATCAGGAACAGGCTAAAGACAAATAGACACCATTTTGTCTGCGGCCGGATGTCATGACCTTTGG
TGATTAATGCTTCGCCGTGATGAAGAGTGCATTGGCGACGGTTCGATGAAAAATCAGTTTGCAGG
GTTTGTCCTCCCTACTAGGTTTTGGAATTTTCTAGGGCTTGACCTCCTTAGATAGGTGTAGATTG
GTGTACAGTTTGGAACGGATTTTGGAAGAATATGGTCAGTATTTTGCAATGTGCCACTGTGCAGA
TTCAAGGCCTGCCACACTAGACTTAAAGATGATGAGGATGAAGAGTGATAAAAGGACCAGTACAT
TGATTCACGGCCAACGATATTGGGTTTAAAGATGAGAAAAAGGATGTCAATATGCTGATTCACGG
TCAGCAACAGTTAGACTTGAAGATGAGAAGAATGCCAATGTGCTGATTCAAGGCCAACGGCATTG
GGTTTTAAAAAT
Found at i:598715 original size:48 final size:47
Alignment explanation
Indices: 598590--598922 Score: 405
Period size: 48 Copynumber: 6.8 Consensus size: 47
598580 TTTTAAAAAT
* * *
598590 GATGAAGGCGCCAATATGCTGAGTCAAGGCCAGCGATATTGGACTTAAA
1 GATG-AGGTGCCAATATGCTGATTCAAGGCCAG-TATATTGGACTTAAA
* * * * *
598639 GACGAAGGTGCCAATGTGTTGAGTCAAGGCCAGTGACATTGGACTTAAA
1 GATG-AGGTGCCAATATGCTGATTCAAGGCCAGT-ATATTGGACTTAAA
*
598688 GATGAGGTGCCAATATGCTGATTCAAGGCCAACTATATTGGACTTAAA
1 GATGAGGTGCCAATATGCTGATTCAAGGCC-AGTATATTGGACTTAAA
* * *
598736 GGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTAGACTTCAA
1 GATGAGGTGCCAATATGCTGATTCAAGGCCAG-TATATTGGACTTAAA
*
598784 GGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
1 GATGAGGTGCCAATATGCTGATTCAAGGCCAG-TATATTGGACTTAAA
* *
598832 GGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTAGACTTAAA
1 GATGAGGTGCCAATATGCTGATTCAAGGCCAG-TATATTGGACTTAAA
*
598880 GGGGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATT
1 ---GAT-GAGGTGCCAATATGCTGATTCAAGGCCAG-TATATT
598923 CGTCCCCTCA
Statistics
Matches: 256, Mismatches: 21, Indels: 11
0.89 0.07 0.04
Matches are distributed among these distances:
47 1 0.00
48 171 0.67
49 47 0.18
51 2 0.01
52 35 0.14
ACGTcount: A:0.31, C:0.17, G:0.27, T:0.25
Consensus pattern (47 bp):
GATGAGGTGCCAATATGCTGATTCAAGGCCAGTATATTGGACTTAAA
Found at i:598763 original size:26 final size:26
Alignment explanation
Indices: 598734--598859 Score: 69
Period size: 26 Copynumber: 5.2 Consensus size: 26
598724 ATTGGACTTA
598734 AAGGTGAGGTGCCAATATGCTGATTC
1 AAGGTGAGGTGCCAATATGCTGATTC
** *
598760 AAGGCCA---G-CTATAT--TAGACTTC
1 AAGGTGAGGTGCCAATATGCT-GA-TTC
598782 AAGGTGAGGTGCCAATATGCTGATTC
1 AAGGTGAGGTGCCAATATGCTGATTC
** * *
598808 AAGGCCA---G-CTATAT--TGGACTTA
1 AAGGTGAGGTGCCAATATGCT-GA-TTC
598830 AAGGTGAGGTGCCAATATGCTGATTC
1 AAGGTGAGGTGCCAATATGCTGATTC
598856 AAGG
1 AAGG
598860 CCAGCTATAT
Statistics
Matches: 70, Mismatches: 14, Indels: 32
0.60 0.12 0.28
Matches are distributed among these distances:
20 2 0.03
21 4 0.06
22 25 0.36
23 2 0.03
25 2 0.03
26 29 0.41
27 4 0.06
28 2 0.03
ACGTcount: A:0.29, C:0.17, G:0.28, T:0.26
Consensus pattern (26 bp):
AAGGTGAGGTGCCAATATGCTGATTC
Found at i:598773 original size:22 final size:22
Alignment explanation
Indices: 598748--598821 Score: 53
Period size: 22 Copynumber: 3.2 Consensus size: 22
598738 TGAGGTGCCA
598748 ATATGCTGATTCAAGGCCAGCT
1 ATATGCTGATTCAAGGCCAGCT
** *
598770 ATAT--TAGACTTCAAGGTGAGGTGCCA
1 ATATGCT-GA-TTCAAGGCCA---G-CT
598796 ATATGCTGATTCAAGGCCAGCT
1 ATATGCTGATTCAAGGCCAGCT
598818 ATAT
1 ATAT
598822 TGGACTTAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 16
0.63 0.10 0.27
Matches are distributed among these distances:
20 1 0.03
21 2 0.05
22 17 0.45
23 1 0.03
25 1 0.03
26 13 0.34
27 2 0.05
28 1 0.03
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (22 bp):
ATATGCTGATTCAAGGCCAGCT
Found at i:598793 original size:912 final size:912
Alignment explanation
Indices: 597724--600697 Score: 5387
Period size: 912 Copynumber: 3.3 Consensus size: 912
597714 GGGTTTTAAA
*
597724 AAAGATGAAGGTGCCAATGTGTTGAGTCAAGGCCAGCGACATTGGACTTAAAGATGAGGTGCCAA
1 AAAGACGAAGGTGCCAATGTGTTGAGTCAAGGCCAGCGACATTGGACTTAAAGATGAGGTGCCAA
* *
597789 TATGTTGATTCAAGGCCAACTATATTGGACTTAACGGTGAGGTGCCAATATGCTGATTCAAGGCC
66 TATGCTGATTCAAGGCCAACTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCC
* * *
597854 AGCTATATTGGACATAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACCTAA
131 AGCTATATTAGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAA
* *
597919 AGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGATAAAGGTGCCA
196 AGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTAGACTTAAAGGGGATAAAGGTGCCA
* * *
597984 ATATGCTGATTCAAGGCCAGCTATATTCGTCCCCACATATGTCGAATCCTCCACCTACTAGCTAG
261 ATATGCTGATTCAAGGCCAGCTATATTCGTCCCCTCATATGTCAAATCCTTCACCTACTAGCTAG
* * * **
598049 GCCTTAAATTGTTGAAAATTGGCCCGGACAAAATGAGGTGTCTACAGCT-CACCCTCTTTGGCTG
326 GCCCTAAATTGTTAAAAATTGGCCCGGACAAAATGAGGTGTCTACAGCTGC-CCTTCTTTGGCCA
* * * * ** * *
598113 TTTTTGAGTATCAGGAACAGGCTAAAGACAAATAGACACCATTTTGTCTGCGGCCGGATGTCATG
390 TTTCTGAGTATCCGGAACAGGCCAAAGACAAATATACACCATTTTGTCTGCGGTTGCAGGTCATG
* * * *
598178 ACCTTTGGTGATTAATGCTTCGCCGTGATGAAGAGTGCATTGGCGACGGTTCCGATAGAAAAATA
455 ACCTTTGGTGATTAATGCTTTGCCGTGATGAAGAGTGCATTGGCGACGGTTTCGATGGAAAAATG
* *
598243 AGTTTGCAGGGTTTGTCCTCCCTACTAGGTTTTGGAATTTTCTAAGGCTTGACCTCCTTAGATAG
520 AGTTTGTAGGGTTTGTCCTCCCTACTAGGTTTTGGAATTTTCTAGGGCTTGACCTCCTTAGATAG
* *
598308 GTGTAGATTGATGTACAGTTTGGAACGGATTTTGGAAGAATATGGTCAGTATTTTCCAATGTGCC
585 GTGTAGATTGGTGTACAGTTTGGAACGGATTTTGGAAGAATATGGTCAGTATTTTGCAATGTGCC
* *
598373 ACTATGCAGATTCAAGGCCTGCCACACTAGACTTAAAGAAT-ATGAGGATGAAGAGTGATAAAAT
650 ACTGTGCAGATTCAAGGCCTGCCACACTAGACTTAAAG-ATGATGAGGATGAAGAGTGATAAAAG
**
598437 GACCAGTATGTTGATTCACGGCCAACGATATTGGGTTTAAAGATGAGAAAAAGGATGTCAATATG
714 GACCAGTACATTGATTCACGGCCAACGATATTGGGTTTAAAGATGAGAAAAAGGATGTCAATATG
598502 CTGATTCACGGTCAGCAACAGTTAGACTTGAAGATGAGAAGAATGCCAATGTGCTGATTCAAGGC
779 CTGATTCACGGTCAGCAACAGTTAGACTTGAAGATGAGAAGAATGCCAATGTGCTGATTCAAGGC
598567 CAACGGCATTGGGTTTTAAAAATGATGAAGGCGCCAATATGCTGAGTCAAGGCCAGCGATATTGG
844 CAACGGCATTGGGTTTTAAAAATGATGAAGGCGCCAATATGCTGAGTCAAGGCCAGCGATATTGG
598632 ACTT
909 ACTT
*
598636 AAAGACGAAGGTGCCAATGTGTTGAGTCAAGGCCAGTGACATTGGACTTAAAGATGAGGTGCCAA
1 AAAGACGAAGGTGCCAATGTGTTGAGTCAAGGCCAGCGACATTGGACTTAAAGATGAGGTGCCAA
598701 TATGCTGATTCAAGGCCAACTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCC
66 TATGCTGATTCAAGGCCAACTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCC
*
598766 AGCTATATTAGACTTCAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAA
131 AGCTATATTAGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAA
598831 AGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTAGACTTAAAGGGGATAAAGGTGCCA
196 AGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTAGACTTAAAGGGGATAAAGGTGCCA
598896 ATATGCTGATTCAAGGCCAGCTATATTCGTCCCCTCATATGTCAAATCCTTCACCTACTAGCTAG
261 ATATGCTGATTCAAGGCCAGCTATATTCGTCCCCTCATATGTCAAATCCTTCACCTACTAGCTAG
*
598961 GCCCTAAATTGTTAAAAATTGGCTCGGACAAAATGAGGTGTCTACAGCTGCCCTTCTTTGGCCAT
326 GCCCTAAATTGTTAAAAATTGGCCCGGACAAAATGAGGTGTCTACAGCTGCCCTTCTTTGGCCAT
599026 TTCTGAGTATCCGGAACAGGCCAAAGACAAATATACACCATTTTGTCTGCGGTTGCAGGTCATGA
391 TTCTGAGTATCCGGAACAGGCCAAAGACAAATATACACCATTTTGTCTGCGGTTGCAGGTCATGA
599091 CCTTTGGTGATTAATGCTTTGCCGTGATGAAGAGTGCATTGGCGACGGTTTCGATGGAAAAATGA
456 CCTTTGGTGATTAATGCTTTGCCGTGATGAAGAGTGCATTGGCGACGGTTTCGATGGAAAAATGA
599156 GTTTGTAGGGTTTGTCCTCCCTACTAGGTTTTGGAATTTTCTAGGGCTTGACCTCCTTAGATAGG
521 GTTTGTAGGGTTTGTCCTCCCTACTAGGTTTTGGAATTTTCTAGGGCTTGACCTCCTTAGATAGG
*
599221 TGTAGATTGGTGTACAGTTTGGAACGGATTTTGAAAGAATATGGTCAGTATTTTGCAATGTGCCA
586 TGTAGATTGGTGTACAGTTTGGAACGGATTTTGGAAGAATATGGTCAGTATTTTGCAATGTGCCA
599286 CTGTGCAGATTCAAGGCCTGCCACACTAGACTTAAAGATGATGAGGATGAAGAGTGATAAAAGGA
651 CTGTGCAGATTCAAGGCCTGCCACACTAGACTTAAAGATGATGAGGATGAAGAGTGATAAAAGGA
599351 CCAGTACATTGATTCACGGCCAACGATATTGGGTTTAAAGATGAGAAAAAGGATGTCAATATGCT
716 CCAGTACATTGATTCACGGCCAACGATATTGGGTTTAAAGATGAGAAAAAGGATGTCAATATGCT
599416 GATTCACGGTCAGCAACAGTTAGACTTGAAGATGAGAAGAATGCCAATGTGCTGATTCAAGGCCA
781 GATTCACGGTCAGCAACAGTTAGACTTGAAGATGAGAAGAATGCCAATGTGCTGATTCAAGGCCA
599481 ACGGCATTGGGTTTTAAAAATGATGAAGGCGCCAATATGCTGAGTCAAGGCCAGCGATATTGGAC
846 ACGGCATTGGGTTTTAAAAATGATGAAGGCGCCAATATGCTGAGTCAAGGCCAGCGATATTGGAC
599546 TT
911 TT
*
599548 AAAGACGAAGGTGCCAATGTGTTGAGTCAAGGCCAGTGACATTGGACTTAAAGATGAGGTGCCAA
1 AAAGACGAAGGTGCCAATGTGTTGAGTCAAGGCCAGCGACATTGGACTTAAAGATGAGGTGCCAA
599613 TATGCTGATTCAAGGCCAACTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCC
66 TATGCTGATTCAAGGCCAACTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCC
*
599678 AGCTATATTAGACTTCAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAA
131 AGCTATATTAGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAA
*
599743 AGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTAGACTTGAAGGGGATAAAGGTGCCA
196 AGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTAGACTTAAAGGGGATAAAGGTGCCA
599808 ATATGCTGATTCAAGGCCAGCTATATTCGTCCCCTCATATGTCAAATCCTTCACCTACTAGCTAG
261 ATATGCTGATTCAAGGCCAGCTATATTCGTCCCCTCATATGTCAAATCCTTCACCTACTAGCTAG
599873 GCCCTAAATTGTTAAAAATTGGCCCGGACAAAATGAGGTGTCTACAGCTGCCCTTCTTTGGCCAT
326 GCCCTAAATTGTTAAAAATTGGCCCGGACAAAATGAGGTGTCTACAGCTGCCCTTCTTTGGCCAT
599938 TTCTGAGTATCCGGAACAGGCCAAAGACAAATATACACCATTTTGTCTGCGGTTGCAGGTCATGA
391 TTCTGAGTATCCGGAACAGGCCAAAGACAAATATACACCATTTTGTCTGCGGTTGCAGGTCATGA
600003 CCTTTGGTGATTAATGCTTTGCCGTGATGAAGAGTGCATTGGCGACGGTTTCGATGGAAAAATGA
456 CCTTTGGTGATTAATGCTTTGCCGTGATGAAGAGTGCATTGGCGACGGTTTCGATGGAAAAATGA
600068 GTTTGTAGGGTTTGTCCTCCCTACTAGGTTTTGGAATTTTCTAGGGCTTGACCTCCTTAGATAGG
521 GTTTGTAGGGTTTGTCCTCCCTACTAGGTTTTGGAATTTTCTAGGGCTTGACCTCCTTAGATAGG
600133 TGTAGATTGGTGTACAGTTTGGAACGGATTTTGGAAGAATATGGTCAGTATTTTGCAATGTGCCA
586 TGTAGATTGGTGTACAGTTTGGAACGGATTTTGGAAGAATATGGTCAGTATTTTGCAATGTGCCA
600198 CTGTGCAGATTCAAGGCCTGCCACACTAGACTTAAAGATGATGAGGATGAAGAGTGATAAAAGGA
651 CTGTGCAGATTCAAGGCCTGCCACACTAGACTTAAAGATGATGAGGATGAAGAGTGATAAAAGGA
600263 CCAGTACATTGATTCACGGCCAACGATATTGGGTTTAAAGATGAGAAAAAGGATGTCAATATGCT
716 CCAGTACATTGATTCACGGCCAACGATATTGGGTTTAAAGATGAGAAAAAGGATGTCAATATGCT
600328 GATTCACGGTCAGCAACAGTTAGACTTGAAGATGAGAAGAATGCCAATGTGCTGATTCAAGGCCA
781 GATTCACGGTCAGCAACAGTTAGACTTGAAGATGAGAAGAATGCCAATGTGCTGATTCAAGGCCA
600393 ACGGCATTGGGTTTTAAAAATGATGAAGGCGCCAATATGCTGAGTCAAGGCCAGCGATATTGGAC
846 ACGGCATTGGGTTTTAAAAATGATGAAGGCGCCAATATGCTGAGTCAAGGCCAGCGATATTGGAC
600458 TT
911 TT
* * * *
600460 AAAGATGAAAGTGCCAATGTGTTGAGTTAAGGCCAGCGACATTGGA-TTAAAGATGTGGTGCCAA
1 AAAGACGAAGGTGCCAATGTGTTGAGTCAAGGCCAGCGACATTGGACTTAAAGATGAGGTGCCAA
* * *
600524 TATGCTGATTCAAGGCCAGCTATATTGCACTTAAAGGTGAGGTGCCAATATGCTAATTCAAGGCC
66 TATGCTGATTCAAGGCCAACTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCC
* * *
600589 AGCTATATTGGACTTAAAGGTAAGGTGCCAATATGCTGATTCAAGGCTAGCTATATTGGACTTAA
131 AGCTATATTAGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAA
*
600654 AGGTGATAAAGGTGCCAATATGCTAATTCAAGGCCAGCTATATT
196 AGGTG----AGGTGCCAATATGCTGATTCAAGGCCAGCTATATT
600698 CGTCCCCACA
Statistics
Matches: 2000, Mismatches: 56, Indels: 9
0.97 0.03 0.00
Matches are distributed among these distances:
911 147 0.07
912 1818 0.91
913 1 0.00
915 34 0.02
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.27
Consensus pattern (912 bp):
AAAGACGAAGGTGCCAATGTGTTGAGTCAAGGCCAGCGACATTGGACTTAAAGATGAGGTGCCAA
TATGCTGATTCAAGGCCAACTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCC
AGCTATATTAGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAA
AGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTAGACTTAAAGGGGATAAAGGTGCCA
ATATGCTGATTCAAGGCCAGCTATATTCGTCCCCTCATATGTCAAATCCTTCACCTACTAGCTAG
GCCCTAAATTGTTAAAAATTGGCCCGGACAAAATGAGGTGTCTACAGCTGCCCTTCTTTGGCCAT
TTCTGAGTATCCGGAACAGGCCAAAGACAAATATACACCATTTTGTCTGCGGTTGCAGGTCATGA
CCTTTGGTGATTAATGCTTTGCCGTGATGAAGAGTGCATTGGCGACGGTTTCGATGGAAAAATGA
GTTTGTAGGGTTTGTCCTCCCTACTAGGTTTTGGAATTTTCTAGGGCTTGACCTCCTTAGATAGG
TGTAGATTGGTGTACAGTTTGGAACGGATTTTGGAAGAATATGGTCAGTATTTTGCAATGTGCCA
CTGTGCAGATTCAAGGCCTGCCACACTAGACTTAAAGATGATGAGGATGAAGAGTGATAAAAGGA
CCAGTACATTGATTCACGGCCAACGATATTGGGTTTAAAGATGAGAAAAAGGATGTCAATATGCT
GATTCACGGTCAGCAACAGTTAGACTTGAAGATGAGAAGAATGCCAATGTGCTGATTCAAGGCCA
ACGGCATTGGGTTTTAAAAATGATGAAGGCGCCAATATGCTGAGTCAAGGCCAGCGATATTGGAC
TT
Found at i:598797 original size:96 final size:96
Alignment explanation
Indices: 598599--598922 Score: 470
Period size: 96 Copynumber: 3.3 Consensus size: 96
598589 TGATGAAGGC
* * ** * * *
598599 GCCAATATGCTGAGTCAAGGCCAGCGATATTGGACTTAAAGACGAAGGTGCCAATGTGTTGAGTC
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTG-AGGTGCCAATATGCTGATTC
* * *
598664 AAGGCCAG-TGACATTGGACTTAAAGATGAGGT
65 AAGGCCAGCT-ATATTAGACTTAAAGGTGAGGT
*
598696 GCCAATATGCTGATTCAAGGCCAACTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCA
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCA
*
598761 AGGCCAGCTATATTAGACTTCAAGGTGAGGT
66 AGGCCAGCTATATTAGACTTAAAGGTGAGGT
598792 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCA
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCA
*
598857 AGGCCAGCTATATTAGACTTAAAGGGGATAAAGGT
66 AGGCCAGCTATATTAGACTTAAA--GG-T-GAGGT
598892 GCCAATATGCTGATTCAAGGCCAGCTATATT
1 GCCAATATGCTGATTCAAGGCCAGCTATATT
598923 CGTCCCCTCA
Statistics
Matches: 207, Mismatches: 15, Indels: 7
0.90 0.07 0.03
Matches are distributed among these distances:
96 129 0.62
97 40 0.19
98 2 0.01
99 1 0.00
100 35 0.17
ACGTcount: A:0.31, C:0.17, G:0.26, T:0.26
Consensus pattern (96 bp):
GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCA
AGGCCAGCTATATTAGACTTAAAGGTGAGGT
Found at i:598838 original size:144 final size:148
Alignment explanation
Indices: 598594--598922 Score: 470
Period size: 144 Copynumber: 2.2 Consensus size: 148
598584 AAAAATGATG
* * * * * *
598594 AAGGCGCCAATATGCTGAGTCAAGGCCAGCGATATTGGACTTAAAGACGAAGGTGCCAATGTGTT
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTAGACTTAAAGACGAAGGTGCCAATATGCT
598659 GAGTCAAGGCCAGTGACATTGGACTTAAAGATGAGGTGCCAATATGCTGATTCAAGGCCAACTAT
66 GAGTCAAGGCCAGTGACATTGGACTTAAAGATGAGGTGCCAATATGCTGATTCAAGGCCAACTAT
*
598724 ATTGGACTTAAA-GG-T-
131 ATTAGACTTAAAGGGATA
* * **
598739 GAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTAGACTTCAAGGTG-AGGTGCCAATATGCT
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTAGACTTAAAGACGAAGGTGCCAATATGCT
* * * *
598803 GATTCAAGGCCAGCT-ATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTA
66 GAGTCAAGGCCAG-TGACATTGGACTTAAAGATGAGGTGCCAATATGCTGATTCAAGGCCAACTA
598867 TATTAGACTTAAAGGGGATA
130 TATTAGACTTAAA-GGGATA
598887 AAGGTGCCAATATGCTGATTCAAGGCCAGCTATATT
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCTATATT
598923 CGTCCCCTCA
Statistics
Matches: 163, Mismatches: 16, Indels: 7
0.88 0.09 0.04
Matches are distributed among these distances:
144 83 0.51
145 42 0.26
146 2 0.01
147 1 0.01
148 35 0.21
ACGTcount: A:0.31, C:0.17, G:0.26, T:0.25
Consensus pattern (148 bp):
AAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTAGACTTAAAGACGAAGGTGCCAATATGCT
GAGTCAAGGCCAGTGACATTGGACTTAAAGATGAGGTGCCAATATGCTGATTCAAGGCCAACTAT
ATTAGACTTAAAGGGATA
Found at i:599627 original size:48 final size:47
Alignment explanation
Indices: 599502--599834 Score: 396
Period size: 48 Copynumber: 6.8 Consensus size: 47
599492 TTTTAAAAAT
* * *
599502 GATGAAGGCGCCAATATGCTGAGTCAAGGCCAGCGATATTGGACTTAAA
1 GATG-AGGTGCCAATATGCTGATTCAAGGCCAG-TATATTGGACTTAAA
* * * * *
599551 GACGAAGGTGCCAATGTGTTGAGTCAAGGCCAGTGACATTGGACTTAAA
1 GATG-AGGTGCCAATATGCTGATTCAAGGCCAGT-ATATTGGACTTAAA
*
599600 GATGAGGTGCCAATATGCTGATTCAAGGCCAACTATATTGGACTTAAA
1 GATGAGGTGCCAATATGCTGATTCAAGGCC-AGTATATTGGACTTAAA
* * *
599648 GGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTAGACTTCAA
1 GATGAGGTGCCAATATGCTGATTCAAGGCCAG-TATATTGGACTTAAA
*
599696 GGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
1 GATGAGGTGCCAATATGCTGATTCAAGGCCAG-TATATTGGACTTAAA
* * *
599744 GGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTAGACTTGAAGGG
1 GATGAGGTGCCAATATGCTGATTCAAGGCCAG-TATATTGGACTT-AA--A
*
599795 GATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATT
1 GAT-GAGGTGCCAATATGCTGATTCAAGGCCAG-TATATT
599835 CGTCCCCTCA
Statistics
Matches: 255, Mismatches: 22, Indels: 11
0.89 0.08 0.04
Matches are distributed among these distances:
47 1 0.00
48 168 0.66
49 49 0.19
51 2 0.01
52 35 0.14
ACGTcount: A:0.31, C:0.17, G:0.27, T:0.25
Consensus pattern (47 bp):
GATGAGGTGCCAATATGCTGATTCAAGGCCAGTATATTGGACTTAAA
Found at i:599675 original size:26 final size:26
Alignment explanation
Indices: 599646--599771 Score: 69
Period size: 26 Copynumber: 5.2 Consensus size: 26
599636 ATTGGACTTA
599646 AAGGTGAGGTGCCAATATGCTGATTC
1 AAGGTGAGGTGCCAATATGCTGATTC
** *
599672 AAGGCCA---G-CTATAT--TAGACTTC
1 AAGGTGAGGTGCCAATATGCT-GA-TTC
599694 AAGGTGAGGTGCCAATATGCTGATTC
1 AAGGTGAGGTGCCAATATGCTGATTC
** * *
599720 AAGGCCA---G-CTATAT--TGGACTTA
1 AAGGTGAGGTGCCAATATGCT-GA-TTC
599742 AAGGTGAGGTGCCAATATGCTGATTC
1 AAGGTGAGGTGCCAATATGCTGATTC
599768 AAGG
1 AAGG
599772 CCAGCTATAT
Statistics
Matches: 70, Mismatches: 14, Indels: 32
0.60 0.12 0.28
Matches are distributed among these distances:
20 2 0.03
21 4 0.06
22 25 0.36
23 2 0.03
25 2 0.03
26 29 0.41
27 4 0.06
28 2 0.03
ACGTcount: A:0.29, C:0.17, G:0.28, T:0.26
Consensus pattern (26 bp):
AAGGTGAGGTGCCAATATGCTGATTC
Found at i:599685 original size:22 final size:22
Alignment explanation
Indices: 599660--599733 Score: 53
Period size: 22 Copynumber: 3.2 Consensus size: 22
599650 TGAGGTGCCA
599660 ATATGCTGATTCAAGGCCAGCT
1 ATATGCTGATTCAAGGCCAGCT
** *
599682 ATAT--TAGACTTCAAGGTGAGGTGCCA
1 ATATGCT-GA-TTCAAGGCCA---G-CT
599708 ATATGCTGATTCAAGGCCAGCT
1 ATATGCTGATTCAAGGCCAGCT
599730 ATAT
1 ATAT
599734 TGGACTTAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 16
0.63 0.10 0.27
Matches are distributed among these distances:
20 1 0.03
21 2 0.05
22 17 0.45
23 1 0.03
25 1 0.03
26 13 0.34
27 2 0.05
28 1 0.03
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (22 bp):
ATATGCTGATTCAAGGCCAGCT
Found at i:599709 original size:96 final size:96
Alignment explanation
Indices: 599511--599834 Score: 461
Period size: 96 Copynumber: 3.3 Consensus size: 96
599501 TGATGAAGGC
* * ** * * *
599511 GCCAATATGCTGAGTCAAGGCCAGCGATATTGGACTTAAAGACGAAGGTGCCAATGTGTTGAGTC
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTG-AGGTGCCAATATGCTGATTC
* * *
599576 AAGGCCAG-TGACATTGGACTTAAAGATGAGGT
65 AAGGCCAGCT-ATATTAGACTTAAAGGTGAGGT
*
599608 GCCAATATGCTGATTCAAGGCCAACTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCA
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCA
*
599673 AGGCCAGCTATATTAGACTTCAAGGTGAGGT
66 AGGCCAGCTATATTAGACTTAAAGGTGAGGT
599704 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCA
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCA
* *
599769 AGGCCAGCTATATTAGACTTGAAGGGGATAAAGGT
66 AGGCCAGCTATATTAGACTT-AA-AGG-T-GAGGT
599804 GCCAATATGCTGATTCAAGGCCAGCTATATT
1 GCCAATATGCTGATTCAAGGCCAGCTATATT
599835 CGTCCCCTCA
Statistics
Matches: 206, Mismatches: 16, Indels: 7
0.90 0.07 0.03
Matches are distributed among these distances:
96 127 0.62
97 41 0.20
98 2 0.01
99 1 0.00
100 35 0.17
ACGTcount: A:0.31, C:0.17, G:0.27, T:0.26
Consensus pattern (96 bp):
GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCA
AGGCCAGCTATATTAGACTTAAAGGTGAGGT
Found at i:599750 original size:144 final size:149
Alignment explanation
Indices: 599506--599834 Score: 463
Period size: 144 Copynumber: 2.2 Consensus size: 149
599496 AAAAATGATG
* * * * * *
599506 AAGGCGCCAATATGCTGAGTCAAGGCCAGCGATATTGGACTTAAAGACGAAGGTGCCAATGTGTT
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTAGACTTAAAGACGAAGGTGCCAATATGCT
599571 GAGTCAAGGCCAGTGACATTGGACTTAAAGATGAGGTGCCAATATGCTGATTCAAGGCCAACTAT
66 GAGTCAAGGCCAGTGACATTGGACTTAAAGATGAGGTGCCAATATGCTGATTCAAGGCCAACTAT
*
599636 ATTGGACTT-AA-AGG-T-
131 ATTAGACTTGAAGAGGATA
* * **
599651 GAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTAGACTTCAAGGTG-AGGTGCCAATATGCT
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTAGACTTAAAGACGAAGGTGCCAATATGCT
* * * *
599715 GATTCAAGGCCAGCT-ATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTA
66 GAGTCAAGGCCAG-TGACATTGGACTTAAAGATGAGGTGCCAATATGCTGATTCAAGGCCAACTA
*
599779 TATTAGACTTGAAGGGGATA
130 TATTAGACTTGAAGAGGATA
599799 AAGGTGCCAATATGCTGATTCAAGGCCAGCTATATT
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCTATATT
599835 CGTCCCCTCA
Statistics
Matches: 162, Mismatches: 17, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
144 80 0.49
145 44 0.27
146 2 0.01
147 1 0.01
148 35 0.22
ACGTcount: A:0.31, C:0.17, G:0.27, T:0.25
Consensus pattern (149 bp):
AAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTAGACTTAAAGACGAAGGTGCCAATATGCT
GAGTCAAGGCCAGTGACATTGGACTTAAAGATGAGGTGCCAATATGCTGATTCAAGGCCAACTAT
ATTAGACTTGAAGAGGATA
Found at i:600542 original size:96 final size:96
Alignment explanation
Indices: 600319--600691 Score: 336
Period size: 96 Copynumber: 3.7 Consensus size: 96
600309 AAAAGGATGT
* * * * * * * *
600319 CAATATGCTGATTCACGGTCAGCAACAGTTAGACTTGAAGATGAGAAGAATGCCAATGTGCTGAT
1 CAATATGCTGATTCAAGGCCAGCTATA-TTGGACTTAAAGAT--GAAG--TGCCAATATGCTAAT
* * ** *
600384 TCAAGGCCAACGGCATTGGGTTTTAAAAATGATGAAGGCGC
61 TCAAGGCCAGCGACATT-GGACTT--AAA-GAT-AAGGTGC
* * * * *
600425 CAATATGCTGAGTCAAGGCCAGCGATATTGGACTTAAAGATGAAAGTGCCAATGTGTTGAGTT-A
1 CAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATG-AAGTGCCAATATGCT-AATTCA
**
600489 AGGCCAGCGACATTGGA-TTAAAGATGTGGTGC
64 AGGCCAGCGACATTGGACTTAAAGATAAGGTGC
* * *
600521 CAATATGCTGATTCAAGGCCAGCTATATTGCACTTAAAGGTGAGGTGCCAATATGCTAATTCAAG
1 CAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGTGCCAATATGCTAATTCAAG
* * *
600586 GCCAGCTATATTGGACTTAAAGGTAAGGTGC
66 GCCAGCGACATTGGACTTAAAGATAAGGTGC
* *
600617 CAATATGCTGATTCAAGGCTAGCTATATTGGACTTAAAGGTGATAAAGGTGCCAATATGCTAATT
1 CAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA---GATGAA-GTGCCAATATGCTAATT
600682 CAAGGCCAGC
62 CAAGGCCAGC
600692 TATATTCGTC
Statistics
Matches: 225, Mismatches: 34, Indels: 22
0.80 0.12 0.08
Matches are distributed among these distances:
94 3 0.01
95 28 0.12
96 90 0.40
97 3 0.01
98 3 0.01
99 3 0.01
100 29 0.13
101 2 0.01
102 24 0.11
103 3 0.01
104 3 0.01
105 12 0.05
106 22 0.10
ACGTcount: A:0.32, C:0.17, G:0.26, T:0.25
Consensus pattern (96 bp):
CAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGTGCCAATATGCTAATTCAAG
GCCAGCGACATTGGACTTAAAGATAAGGTGC
Found at i:600558 original size:48 final size:48
Alignment explanation
Indices: 600423--600697 Score: 347
Period size: 48 Copynumber: 5.6 Consensus size: 48
600413 TGATGAAGGC
* * * *
600423 GCCAATATGCTGAGTCAAGGCCAGCGATATTGGACTTAAAGATGAAAGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTG-AGGT
* * * * * *
600472 GCCAATGTGTTGAGTT-AAGGCCAGCGACATTGGA-TTAAAGATGTGGT
1 GCCAATATGCTGA-TTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGT
*
600519 GCCAATATGCTGATTCAAGGCCAGCTATATTGCACTTAAAGGTGAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGT
* *
600567 GCCAATATGCTAATTCAAGGCCAGCTATATTGGACTTAAAGGTAAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGT
*
600615 GCCAATATGCTGATTCAAGGCTAGCTATATTGGACTTAAAGGTGATAAAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTG----AGGT
*
600667 GCCAATATGCTAATTCAAGGCCAGCTATATT
1 GCCAATATGCTGATTCAAGGCCAGCTATATT
600698 CGTCCCCACA
Statistics
Matches: 198, Mismatches: 21, Indels: 11
0.86 0.09 0.05
Matches are distributed among these distances:
46 2 0.01
47 28 0.14
48 106 0.54
49 28 0.14
50 1 0.01
52 33 0.17
ACGTcount: A:0.32, C:0.16, G:0.25, T:0.27
Consensus pattern (48 bp):
GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGT
Found at i:601402 original size:48 final size:48
Alignment explanation
Indices: 601286--601661 Score: 500
Period size: 48 Copynumber: 7.6 Consensus size: 48
601276 TGATAAAGGC
* * *
601286 GCCAATATGCTGAGTCAAGGCCAGCAATATTGGACTTAAAGACGAAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATG-AGGT
* * * * *
601335 GCCAATGTGTTGAGTCAAGGCCAGCGACATTGGACTTAAAGATGAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAGGT
* * *
601383 GCCACTATGCTGATTCAAGGCCAACTATATTGGACTTAAAGGTGAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAGGT
* * *
601431 GCCAATATGCTGATTTAAGGCCAGCTATATTAGACTTAAAGGTGAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAGGT
*
601479 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAGGT
*
601527 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGATAAAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA---GAT-GAGGT
* *
601579 GCCAATATGCTGATTCAAGGCCAGCTATATTTGACTTAAAGGTGATAAAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA---GAT-GAGGT
*
601631 GCCAACATGCTGATTCAAGGCCAGCTATATT
1 GCCAATATGCTGATTCAAGGCCAGCTATATT
601662 CGTCCCCACA
Statistics
Matches: 300, Mismatches: 23, Indels: 5
0.91 0.07 0.02
Matches are distributed among these distances:
48 174 0.58
49 39 0.13
51 2 0.01
52 85 0.28
ACGTcount: A:0.31, C:0.17, G:0.26, T:0.26
Consensus pattern (48 bp):
GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAGGT
Found at i:602309 original size:48 final size:48
Alignment explanation
Indices: 602238--602524 Score: 412
Period size: 48 Copynumber: 5.9 Consensus size: 48
602228 GGGTTTTAAA
* * * * *
602238 AAAGATGAAGGTGCCAATGTGTTGAGTCAAGGCCAGCGACATTGGACTT
1 AAAGATG-AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
* *
602287 AAAGATGAGGTGCCAATATGTTGATTCAAGGCCAACTATATTGGACTT
1 AAAGATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
* *
602335 AAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACAT
1 AAAGATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
* *
602383 AAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACCT
1 AAAGATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
*
602431 AAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
1 AAAGATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
*
602479 AAAGGTGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATT
1 AAA---GAT-GAGGTGCCAATATGCTGATTCAAGGCCAGCTATATT
602525 CGTCCCCACA
Statistics
Matches: 221, Mismatches: 13, Indels: 5
0.92 0.05 0.02
Matches are distributed among these distances:
48 177 0.80
49 7 0.03
51 2 0.01
52 35 0.16
ACGTcount: A:0.31, C:0.16, G:0.26, T:0.26
Consensus pattern (48 bp):
AAAGATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
Found at i:603229 original size:48 final size:47
Alignment explanation
Indices: 603104--603484 Score: 492
Period size: 48 Copynumber: 7.8 Consensus size: 47
603094 TTTTAAAAAT
* * *
603104 GATGAAGGCGCCAATATGCTGAGTCAAGGCCAGCGATATTGGACTTAAA
1 GATG-AGGTGCCAATATGCTGATTCAAGGCCAG-TATATTGGACTTAAA
* * * * *
603153 GACGAAGGTGCCAATGTGTTGAGTCAAGGCCAGTGACATTGGACTTAAA
1 GATG-AGGTGCCAATATGCTGATTCAAGGCCAGT-ATATTGGACTTAAA
*
603202 GATGAGGTGCCAATATGCTGATTCAAGGCCAACTATATTGGACTTAAA
1 GATGAGGTGCCAATATGCTGATTCAAGGCC-AGTATATTGGACTTAAA
* * *
603250 GGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTAGACTTCAA
1 GATGAGGTGCCAATATGCTGATTCAAGGCCAG-TATATTGGACTTAAA
*
603298 GGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
1 GATGAGGTGCCAATATGCTGATTCAAGGCCAG-TATATTGGACTTAAA
*
603346 GGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
1 GATGAGGTGCCAATATGCTGATTCAAGGCCAG-TATATTGGACTTAAA
*
603394 GGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
1 GATGAGGTGCCAATATGCTGATTCAAGGCCAG-TATATTGGACTTAAA
*
603442 GGGGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATT
1 ---GAT-GAGGTGCCAATATGCTGATTCAAGGCCAG-TATATT
603485 CGTCCCCTCA
Statistics
Matches: 305, Mismatches: 20, Indels: 11
0.91 0.06 0.03
Matches are distributed among these distances:
47 1 0.00
48 220 0.72
49 47 0.15
51 2 0.01
52 35 0.11
ACGTcount: A:0.30, C:0.17, G:0.27, T:0.25
Consensus pattern (47 bp):
GATGAGGTGCCAATATGCTGATTCAAGGCCAGTATATTGGACTTAAA
Found at i:603287 original size:22 final size:22
Alignment explanation
Indices: 603262--603335 Score: 53
Period size: 22 Copynumber: 3.2 Consensus size: 22
603252 TGAGGTGCCA
603262 ATATGCTGATTCAAGGCCAGCT
1 ATATGCTGATTCAAGGCCAGCT
** *
603284 ATAT--TAGACTTCAAGGTGAGGTGCCA
1 ATATGCT-GA-TTCAAGGCCA---G-CT
603310 ATATGCTGATTCAAGGCCAGCT
1 ATATGCTGATTCAAGGCCAGCT
603332 ATAT
1 ATAT
603336 TGGACTTAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 16
0.63 0.10 0.27
Matches are distributed among these distances:
20 1 0.03
21 2 0.05
22 17 0.45
23 1 0.03
25 1 0.03
26 13 0.34
27 2 0.05
28 1 0.03
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (22 bp):
ATATGCTGATTCAAGGCCAGCT
Found at i:603311 original size:96 final size:96
Alignment explanation
Indices: 603113--603484 Score: 566
Period size: 96 Copynumber: 3.8 Consensus size: 96
603103 TGATGAAGGC
* * ** * * *
603113 GCCAATATGCTGAGTCAAGGCCAGCGATATTGGACTTAAAGACGAAGGTGCCAATGTGTTGAGTC
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTG-AGGTGCCAATATGCTGATTC
* *
603178 AAGGCCAG-TGACATTGGACTTAAAGATGAGGT
65 AAGGCCAGCT-ATATTGGACTTAAAGGTGAGGT
*
603210 GCCAATATGCTGATTCAAGGCCAACTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCA
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCA
* *
603275 AGGCCAGCTATATTAGACTTCAAGGTGAGGT
66 AGGCCAGCTATATTGGACTTAAAGGTGAGGT
603306 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCA
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCA
603371 AGGCCAGCTATATTGGACTTAAAGGTGAGGT
66 AGGCCAGCTATATTGGACTTAAAGGTGAGGT
*
603402 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGGGATAAAGGTGCCAATATGCTGA
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA--GG-T-GAGGTGCCAATATGCTGA
603467 TTCAAGGCCAGCTATATT
62 TTCAAGGCCAGCTATATT
603485 CGTCCCCTCA
Statistics
Matches: 254, Mismatches: 16, Indels: 7
0.92 0.06 0.03
Matches are distributed among these distances:
96 176 0.69
97 40 0.16
98 2 0.01
99 1 0.00
100 35 0.14
ACGTcount: A:0.30, C:0.17, G:0.27, T:0.26
Consensus pattern (96 bp):
GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCA
AGGCCAGCTATATTGGACTTAAAGGTGAGGT
Found at i:603352 original size:144 final size:144
Alignment explanation
Indices: 603113--603484 Score: 566
Period size: 144 Copynumber: 2.5 Consensus size: 144
603103 TGATGAAGGC
* * ** * * *
603113 GCCAATATGCTGAGTCAAGGCCAGCGATATTGGACTTAAAGACGAAGGTGCCAATGTGTTGAGTC
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTG-AGGTGCCAATATGCTGATTC
*
603178 AAGGCCAG-TGACATTGGACTTAAAGATGAGGTGCCAATATGCTGATTCAAGGCCAACTATATTG
65 AAGGCCAGCT-ATATTGGACTTAAAGATGAGGTGCCAATATGCTGATTCAAGGCCAACTATATTG
603242 GACTTAAAGGTGAGGT
129 GACTTAAAGGTGAGGT
* *
603258 GCCAATATGCTGATTCAAGGCCAGCTATATTAGACTTCAAGGTGAGGTGCCAATATGCTGATTCA
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCA
* *
603323 AGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGA
66 AGGCCAGCTATATTGGACTTAAAGATGAGGTGCCAATATGCTGATTCAAGGCCAACTATATTGGA
603388 CTTAAAGGTGAGGT
131 CTTAAAGGTGAGGT
*
603402 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGGGATAAAGGTGCCAATATGCTGA
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA--GG-T-GAGGTGCCAATATGCTGA
603467 TTCAAGGCCAGCTATATT
62 TTCAAGGCCAGCTATATT
603485 CGTCCCCTCA
Statistics
Matches: 207, Mismatches: 15, Indels: 7
0.90 0.07 0.03
Matches are distributed among these distances:
144 130 0.63
145 39 0.19
146 2 0.01
147 1 0.00
148 35 0.17
ACGTcount: A:0.30, C:0.17, G:0.27, T:0.26
Consensus pattern (144 bp):
GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCA
AGGCCAGCTATATTGGACTTAAAGATGAGGTGCCAATATGCTGATTCAAGGCCAACTATATTGGA
CTTAAAGGTGAGGT
Found at i:604105 original size:960 final size:959
Alignment explanation
Indices: 602238--604347 Score: 3693
Period size: 960 Copynumber: 2.2 Consensus size: 959
602228 GGGTTTTAAA
* * * * * *
602238 AAAGATGAAGGTGCCAATGTGTTGAGTCAAGGCCAGCGACATTGGACTTAAAGATGAGGTGCCAA
1 AAAGATG-AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAA
* *
602303 TATGTTGATTCAAGGCCAACTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCC
65 TATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCC
*
602368 AGCTATATTGGACATAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACCTAA
130 AGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACCTAA
*
602433 AGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGATAAAGGTGCCA
195 AGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGGGATAAAGGTGCCA
*
602498 ATATGCTGATTCAAGGCCAGCTATATTCGTCCCCACATATGTCGAATCCTCCACCTACTAGCTAG
260 ATATGCTGATTCAAGGCCAGCTATATTCGTCCCCACATATGTCAAATCCTCCACCTACTAGCTAG
* **
602563 GCCCTAAATTGTTGAAAATTGGCCCGGACAAAATGAGGTGTCTACAGCTCACCCTCTTTGGCTGT
325 GCCCTAAATTGTTAAAAATTGGCCCGGACAAAATGAGGTGTCTACAGCTCACCCTCTTTGGCCAT
* * *
602628 TTTTGAGTATCAGGAACAGGCCAAAGACAAATAGACACCATTTTGTCTGCGGCCGGATGTCATGA
390 TTCTGAGTATCAGGAACAGGCCAAAGACAAATAGACACCATTTTGTCTGCGGCCGCAGGTCATGA
602693 CCTTTGGTGATTAATGCTTCGCCGTGATGAAGAGTGCATTGGCGACGGTTCCGATAGAAAAATAA
455 CCTTTGGTGATTAATGCTTCGCCGTGATGAAGAGTGCATTGGCGACGGTTCCGATAGAAAAATAA
602758 GTTTGCAGGGTTTGTCCTCCCTACTAGGTTTTGGAATTTTCTAAGGCTTGACCTCCTTAGATAGG
520 GTTTGCAGGGTTTGTCCTCCCTACTAGGTTTTGGAATTTTCTAAGGCTTGACCTCCTTAGATAGG
602823 TGTAGATTGATGTACAGTTTGGAACGGATTTTGGAAGAATATGGTCAGTATTTTGCAATGTGCCA
585 TGTAGATTGATGTACAGTTTGGAACGGATTTTGGAAGAATATGGTCAGTATTTTGCAATGTGCCA
*
602888 CTATGCAGATTCAAGGCCTGCCACACTAGACTTAAAGAATATGAGGATGAAGAGTGATAAAATGA
650 CTATGCAGATTCAAGGCCTGCCACACTAGACTTAAAGAATATGAGGATGAAGAGTGATAAAAGGA
**
602953 CCAGTATGTTGATTCACGGCCAACGATATTGGGTTTAAAGATGAGAAAAAGGATGTCAATATGCT
715 CCAGTACATTGATTCACGGCCAACGATATTGGGTTTAAAGATGAGAAAAAGGATGTCAATATGCT
603018 GATTCACGGTCAGCAACAGTTAGACTTGAAGATGAGAAGAATGCCAATGTGCTGATTCAAGGCCA
780 GATTCACGGTCAGCAACAGTTAGACTTGAAGATGAGAAGAATGCCAATGTGCTGATTCAAGGCCA
603083 ACGGCATTGGGTTTTAAAAATGATGAAGGCGCCAATATGCTGAGTCAAGGCCAGCGATATTGGAC
845 ACGGCATTGGGTTTTAAAAATGATGAAGGCGCCAATATGCTGAGTCAAGGCCAGCGATATTGGAC
* *
603148 TTAAAGACGAAGGTGCCAATGTGTTGAGTCAAGGCCAGTGACATTGGACTT
910 TTAAAGACGAAAGTGCCAATGTGTTGAGTCAAGGCCAGCGACATTGGA-TT
*
603199 AAAGATGAGGTGCCAATATGCTGATTCAAGGCCAACTATATTGGACTTAAAGGTGAGGTGCCAAT
1 AAAGATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAAT
* *
603264 ATGCTGATTCAAGGCCAGCTATATTAGACTTCAAGGTGAGGTGCCAATATGCTGATTCAAGGCCA
66 ATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCA
*
603329 GCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
131 GCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACCTAAA
603394 GGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGGGATAAAGGTGCCAA
196 GGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGGGATAAAGGTGCCAA
* *
603459 TATGCTGATTCAAGGCCAGCTATATTCGTCCCCTCATATGTCAAATCCTTCACCTACTAGCTAGG
261 TATGCTGATTCAAGGCCAGCTATATTCGTCCCCACATATGTCAAATCCTCCACCTACTAGCTAGG
*
603524 CCCTAAATTGTTAAAAATTGGCCCGGACAAAATGAGGTGTCTACAGCTGC-CCTTCTTTGGCCAT
326 CCCTAAATTGTTAAAAATTGGCCCGGACAAAATGAGGTGTCTACAGCT-CACCCTCTTTGGCCAT
* * **
603588 TTCTGAGTATCCGGAACAGGCCAAAGACAAATATACACCATTTTGTCTGCGGTTGCAGGTCATGA
390 TTCTGAGTATCAGGAACAGGCCAAAGACAAATAGACACCATTTTGTCTGCGGCCGCAGGTCATGA
* * * *
603653 CCTTTGGTGATTAATGCTTTGCCGTGATGAAGAGTGCATTGGCGACGGTTTCGATGGAAAAATGA
455 CCTTTGGTGATTAATGCTTCGCCGTGATGAAGAGTGCATTGGCGACGGTTCCGATAGAAAAATAA
* *
603718 GTTTGTAGGGTTTGTCCTCCCTACTAGGTTTTGGAATTTTCTAGGGCTTGACCTCCTTAGATAGG
520 GTTTGCAGGGTTTGTCCTCCCTACTAGGTTTTGGAATTTTCTAAGGCTTGACCTCCTTAGATAGG
*
603783 TGTAGATTGGTGTACAGTTTGGAACGGATTTTGGAAGAATATGGTCAGTATTTTGCAATGTGCCA
585 TGTAGATTGATGTACAGTTTGGAACGGATTTTGGAAGAATATGGTCAGTATTTTGCAATGTGCCA
*
603848 CTGTGCAGATTCAAGGCCTGCCACACTAGACTTAAAG-ATGATGAGGATGAAGAGTGATAAAAGG
650 CTATGCAGATTCAAGGCCTGCCACACTAGACTTAAAGAAT-ATGAGGATGAAGAGTGATAAAAGG
603912 ACCAGTACATTGATTCACGGCCAACGATATTGGGTTTAAAGATGAGAAAAAGGATGTCAATATGC
714 ACCAGTACATTGATTCACGGCCAACGATATTGGGTTTAAAGATGAGAAAAAGGATGTCAATATGC
603977 TGATTCACGGTCAGCAACAGTTAGACTTGAAGATGAGAAGAATGCCAATGTGCTGATTCAAGGCC
779 TGATTCACGGTCAGCAACAGTTAGACTTGAAGATGAGAAGAATGCCAATGTGCTGATTCAAGGCC
604042 AACGGCATTGGGTTTTAAAAATGATGAAGGCGCCAATATGCTGAGTCAAGGCCAGCGATATTGGA
844 AACGGCATTGGGTTTTAAAAATGATGAAGGCGCCAATATGCTGAGTCAAGGCCAGCGATATTGGA
*
604107 CTTAAAGACGAAAGTGCCAATGTGTTGAGTTAAGGCCAGCGACATTGGATT
909 CTTAAAGACGAAAGTGCCAATGTGTTGAGTCAAGGCCAGCGACATTGGATT
* *
604158 AAAGATGTGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGCACTTAAAGGTGAGGTGCCAAT
1 AAAGATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAAT
* * * *
604223 ATACTGATTCAAGGCCAGCTATACTGGACTTAAAGGTAAGGTGCCAATATGCTGATTCAAGGCTA
66 ATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCA
*
604288 GCTATATTGGACTTAAAGGTGATAAAGGTGCCAATATGCTAATTCAAGGCCAGCTATATT
131 GCTATATTGGACTTAAAGGTG----AGGTGCCAATATGCTGATTCAAGGCCAGCTATATT
604348 CGTCCCCACA
Statistics
Matches: 1091, Mismatches: 52, Indels: 10
0.95 0.05 0.01
Matches are distributed among these distances:
959 146 0.13
960 903 0.83
961 8 0.01
963 34 0.03
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.27
Consensus pattern (959 bp):
AAAGATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAAT
ATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCA
GCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACCTAAA
GGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGGGATAAAGGTGCCAA
TATGCTGATTCAAGGCCAGCTATATTCGTCCCCACATATGTCAAATCCTCCACCTACTAGCTAGG
CCCTAAATTGTTAAAAATTGGCCCGGACAAAATGAGGTGTCTACAGCTCACCCTCTTTGGCCATT
TCTGAGTATCAGGAACAGGCCAAAGACAAATAGACACCATTTTGTCTGCGGCCGCAGGTCATGAC
CTTTGGTGATTAATGCTTCGCCGTGATGAAGAGTGCATTGGCGACGGTTCCGATAGAAAAATAAG
TTTGCAGGGTTTGTCCTCCCTACTAGGTTTTGGAATTTTCTAAGGCTTGACCTCCTTAGATAGGT
GTAGATTGATGTACAGTTTGGAACGGATTTTGGAAGAATATGGTCAGTATTTTGCAATGTGCCAC
TATGCAGATTCAAGGCCTGCCACACTAGACTTAAAGAATATGAGGATGAAGAGTGATAAAAGGAC
CAGTACATTGATTCACGGCCAACGATATTGGGTTTAAAGATGAGAAAAAGGATGTCAATATGCTG
ATTCACGGTCAGCAACAGTTAGACTTGAAGATGAGAAGAATGCCAATGTGCTGATTCAAGGCCAA
CGGCATTGGGTTTTAAAAATGATGAAGGCGCCAATATGCTGAGTCAAGGCCAGCGATATTGGACT
TAAAGACGAAAGTGCCAATGTGTTGAGTCAAGGCCAGCGACATTGGATT
Found at i:604221 original size:48 final size:48
Alignment explanation
Indices: 604073--604347 Score: 329
Period size: 48 Copynumber: 5.6 Consensus size: 48
604063 TGATGAAGGC
* * ** *
604073 GCCAATATGCTGAGTCAAGGCCAGCGATATTGGACTTAAAGACGAAAGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTG-AGGT
* * * * * *
604122 GCCAATGTGTTGAGTT-AAGGCCAGCGACATTGGA-TTAAAGATGTGGT
1 GCCAATATGCTGA-TTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGT
*
604169 GCCAATATGCTGATTCAAGGCCAGCTATATTGCACTTAAAGGTGAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGT
* * *
604217 GCCAATATACTGATTCAAGGCCAGCTATACTGGACTTAAAGGTAAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGT
*
604265 GCCAATATGCTGATTCAAGGCTAGCTATATTGGACTTAAAGGTGATAAAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTG----AGGT
*
604317 GCCAATATGCTAATTCAAGGCCAGCTATATT
1 GCCAATATGCTGATTCAAGGCCAGCTATATT
604348 CGTCCCCACA
Statistics
Matches: 195, Mismatches: 24, Indels: 11
0.85 0.10 0.05
Matches are distributed among these distances:
46 2 0.01
47 28 0.14
48 103 0.53
49 28 0.14
50 1 0.01
52 33 0.17
ACGTcount: A:0.32, C:0.17, G:0.25, T:0.26
Consensus pattern (48 bp):
GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGT
Found at i:605052 original size:48 final size:48
Alignment explanation
Indices: 604927--605256 Score: 423
Period size: 48 Copynumber: 6.8 Consensus size: 48
604917 TTTTAAAAAT
* * *
604927 GATGAAGGCGCCAATATGCTGAGTCAAGGCCAGCAATATTGGACTTAAA
1 GATG-AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
* * * * * *
604976 GACGAAGGTGCCAATGTGTTGAGTCAAGGCCAGCGACATTGGACTTAAA
1 GATG-AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
*
605025 GATGAGGTGCCAATATGCTGATTCAAGGCCAACTATATTGGACTTAAA
1 GATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
* *
605073 GGTGAGGTGCCAATATGCTGATTCAA---CAACTATATTGGACTTAAA
1 GATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
* *
605118 GGTGAGGTGCCAAAATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
1 GATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
* *
605166 GGTGAGGTGCCAATATGCTGATTCAAGGCTAGCTATATTGGACTTAAA
1 GATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
* *
605214 GGTGATAAAGGTGCCAATATGCTGATACAAGGCCAGCTATATT
1 ---GAT-GAGGTGCCAATATGCTGATTCAAGGCCAGCTATATT
605257 CATCCCCACA
Statistics
Matches: 252, Mismatches: 22, Indels: 11
0.88 0.08 0.04
Matches are distributed among these distances:
45 44 0.17
48 127 0.50
49 46 0.18
51 2 0.01
52 33 0.13
ACGTcount: A:0.32, C:0.17, G:0.26, T:0.25
Consensus pattern (48 bp):
GATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
Found at i:605142 original size:93 final size:94
Alignment explanation
Indices: 604936--605256 Score: 428
Period size: 93 Copynumber: 3.3 Consensus size: 94
604926 TGATGAAGGC
* * ** * * *
604936 GCCAATATGCTGAGTCAAGGCCAGCAATATTGGACTTAAAGACGAAGGTGCCAATGTGTTGAGTC
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTG-AGGTGCCAATATGCTGATTC
* * *
605001 AAGGCCAGCGACATTGGACTTAAAGATGAGGT
65 AA-G-CAGCTATATTGGACTTAAAGGTGAGGT
*
605033 GCCAATATGCTGATTCAAGGCCAACTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCA
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCA
*
605098 A-CAACTATATTGGACTTAAAGGTGAGGT
66 AGCAGCTATATTGGACTTAAAGGTGAGGT
*
605126 GCCAAAATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCA
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCA
605191 AGGCTAGCTATATTGGACTTAAAGGTGATAAAGGT
66 A-GC-AGCTATATTGGACTTAAAGGTG----AGGT
*
605226 GCCAATATGCTGATACAAGGCCAGCTATATT
1 GCCAATATGCTGATTCAAGGCCAGCTATATT
605257 CATCCCCACA
Statistics
Matches: 200, Mismatches: 17, Indels: 11
0.88 0.07 0.05
Matches are distributed among these distances:
93 87 0.44
95 1 0.00
96 40 0.20
97 39 0.19
100 33 0.17
ACGTcount: A:0.32, C:0.17, G:0.26, T:0.26
Consensus pattern (94 bp):
GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCA
AGCAGCTATATTGGACTTAAAGGTGAGGT
Found at i:605950 original size:909 final size:909
Alignment explanation
Indices: 604067--607030 Score: 4281
Period size: 909 Copynumber: 3.2 Consensus size: 909
604057 TAAAAATGAT
* * * * * * * *
604067 GAAGGCGCCAATATGCTGAGTCAAGGCCAGCGATATTGGACTTAAAGACGAAAGTGCCAATGTGT
1 GAAGGTGCCAATGTGTTGAGTCAAGGCCAGCGACATTGGACTTAAAGATG-AGGTGCCAATATGC
* * * * *
604132 TGAGTT-AAGGCCAGCGACATTGGA-TTAAAGATGTGGTGCCAATATGCTGATTCAAGGCCAGCT
65 TGA-TTCAAGGCCAACTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAA---CAGCT
* * * *
604195 ATATTGCACTTAAAGGTGAGGTGCCAATATACTGATTCAAGGCCAGCTATACTGGACTTAAAGGT
126 ATATTGGACTTAAAGGTGAGGTGCCAAAATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGT
*
604260 AAGGTGCCAATATGCTGATTCAAGGCTAGCTATATTGGACTTAAAGGTGATAAAGGTGCCAATAT
191 GAGGTGCCAATATGCTGATTCAAGGCTAGCTATATTGGACTTAAAGGTGATAAAGGTGCCAATAT
* * *
604325 GCTAATTCAAGGCCAGCTATATTCGTCCCCACATATGCCGAATCCTCCACCTACTAGCTAGGCCT
256 GCTGATTCAAGGCCAGCTATATTCATCCCCACATATGCCGAATCCTCCACCTACTAGCTAGGCCC
* *
604390 TAAATTGGTGAAAATTCGCTCGGACAAAATGAGGTGTCTACAACTGCCCCTCATTGGCCGCTTCT
321 TAAATTGGTGAAAATTCGCCCGGACAAAATGAGGTCTCTACAACTGCCCCTCATTGGCCGCTTCT
*
604455 GAGTATCAGGAACAGGCCAAAGACAAATACACAGCATTTTGTCTGCGGCCGCATGTCATGACCTT
386 GAGTATCAGGAACAGGCCAAAGACAAATACACACCATTTTGTCTGCGGCCGCATGTCATGACCTT
*
604520 TGGTGATTAATGCTTCGCCGTGATGAAGAGTGCATTCGCGACGGTTCCGATGGAAAAATGAGTTT
451 TGGTGATTAATGCTTCGCCGTGATGAAGAGTGCATTCGCGACAGTTCCGATGGAAAAATGAGTTT
604585 GTAGGGTTTGTCCTCCCTACTAGGTTTTGAAATTTTCTAAGGCTTGACCACCTTAGAAAGGTGTA
516 GTAGGGTTTGTCCTCCCTACTAGGTTTTGAAATTTTCTAAGGCTTGACCACCTTAGAAAGGTGTA
604650 GATTGGTGTACAGTTTGGAACGGATTTTGGAAGAATATGGTCAGTATTTTGCAATGTGCCACTGT
581 GATTGGTGTACAGTTTGGAACGGATTTTGGAAGAATATGGTCAGTATTTTGCAATGTGCCACTGT
* *
604715 GCAGATTCAAGGCGTGCCACACTAGGCTTAAAGATGATGAGGATGAAGAGTGATAAAAGGACCAG
646 GCAGATTCAAGGCCTGCCACACTAGACTTAAAGATGATGAGGATGAAGAGTGATAAAAGGACCAG
* *
604780 TACGTTGATTTACGGCCAACGATATTAGGTTTAAAGATTAGAAAAAGGATGTCAATATGCTGATT
711 TACGTTGATTCACGGCCAACGATATTAGGTTTAAAGATGAGAAAAAGGATGTCAATATGCTGATT
604845 CACAGTCAGCAACAGTTAGACTTGAAGATGAGAAGAATGCCAATGTGCTGATTCAAGGCCAACGG
776 CACAGTCAGCAACAGTTAGACTTGAAGATGAGAAGAATGCCAATGTGCTGATTCAAGGCCAACGG
604910 CATTGGGTTTTAAAAATGATGAAGGCGCCAATATGCTGAGTCAAGGCCAGCAATATTGGACTTAA
841 CATTGGGTTTTAAAAATGATGAAGGCGCCAATATGCTGAGTCAAGGCCAGCAATATTGGACTTAA
604975 AGAC
906 AGAC
604979 GAAGGTGCCAATGTGTTGAGTCAAGGCCAGCGACATTGGACTTAAAGATGAGGTGCCAATATGCT
1 GAAGGTGCCAATGTGTTGAGTCAAGGCCAGCGACATTGGACTTAAAGATGAGGTGCCAATATGCT
*
605044 GATTCAAGGCCAACTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAACAACTATATT
66 GATTCAAGGCCAACTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAACAGCTATATT
605109 GGACTTAAAGGTGAGGTGCCAAAATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGT
131 GGACTTAAAGGTGAGGTGCCAAAATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGT
605174 GCCAATATGCTGATTCAAGGCTAGCTATATTGGACTTAAAGGTGATAAAGGTGCCAATATGCTGA
196 GCCAATATGCTGATTCAAGGCTAGCTATATTGGACTTAAAGGTGATAAAGGTGCCAATATGCTGA
* *
605239 TACAAGGCCAGCTATATTCATCCCCACATATGTCGAATCCTCCACCTACTAGCTAGGCCCTAAAT
261 TTCAAGGCCAGCTATATTCATCCCCACATATGCCGAATCCTCCACCTACTAGCTAGGCCCTAAAT
* * * * * *
605304 TGGTGAAAATTGGCCCGGACAAAATGTGGTCTCTGCAGCTGCCCCTCTTTGGCCGGTTCTGAGTA
326 TGGTGAAAATTCGCCCGGACAAAATGAGGTCTCTACAACTGCCCCTCATTGGCCGCTTCTGAGTA
* * *
605369 TCAGGAATAGGCTAAAGACAAATATACACCATTTTGTCTGCGGCCGCATGTCATGACCTTTGGTG
391 TCAGGAACAGGCCAAAGACAAATACACACCATTTTGTCTGCGGCCGCATGTCATGACCTTTGGTG
*
605434 ATTAATGCTTCGCCGTGATGAAGAGTGCATTGGCGACAGTTCCGATGGAAAAATGAGTTTGTAGG
456 ATTAATGCTTCGCCGTGATGAAGAGTGCATTCGCGACAGTTCCGATGGAAAAATGAGTTTGTAGG
* * *
605499 GTTTGTCCTCCCTACTAGGTTTTGGAATTTTCTAAGGCTTGACCTCCTTAGATAGGTGTAGATTG
521 GTTTGTCCTCCCTACTAGGTTTTGAAATTTTCTAAGGCTTGACCACCTTAGAAAGGTGTAGATTG
* *
605564 GTGTACAGTTTGGAACGGATTTTGGAAGAATATGGTCAGTATTTTGCTATGTGCCATTGTGCAGA
586 GTGTACAGTTTGGAACGGATTTTGGAAGAATATGGTCAGTATTTTGCAATGTGCCACTGTGCAGA
*
605629 TTCAAGGCCTGCCACACTAGACTTAAAGATGATGAGGATGAAGAGTGATAAAAGGACTAGTACGT
651 TTCAAGGCCTGCCACACTAGACTTAAAGATGATGAGGATGAAGAGTGATAAAAGGACCAGTACGT
* *
605694 TGATTCGCGGCCAACGATATTAGGTTTAAAGATGAGAAAGAGGATGTCAATATGCTGATTCACAG
716 TGATTCACGGCCAACGATATTAGGTTTAAAGATGAGAAAAAGGATGTCAATATGCTGATTCACAG
605759 TCAGCAACAGTTAGACTTGAAGATGAGAAGAATGCCAATGTGCTGATTCAAGGCCAACGGCATTG
781 TCAGCAACAGTTAGACTTGAAGATGAGAAGAATGCCAATGTGCTGATTCAAGGCCAACGGCATTG
* *
605824 GGTTTTAAAAATGATGAAGGTGCCAATATGCTGAGTCAAGGCTAGCAATATTGGACTTAAAGAC
846 GGTTTTAAAAATGATGAAGGCGCCAATATGCTGAGTCAAGGCCAGCAATATTGGACTTAAAGAC
605888 GAAGGTGCCAATGTGTTGAGTCAAGGCCAGCGACATTGGACTTAAAGATGAGGTGCCAATATGCT
1 GAAGGTGCCAATGTGTTGAGTCAAGGCCAGCGACATTGGACTTAAAGATGAGGTGCCAATATGCT
605953 GATTCAAGGCCAACTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAACAGCTATATT
66 GATTCAAGGCCAACTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAACAGCTATATT
* *
606018 TGACATAAAGGTGAGGTGCCAAAATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGT
131 GGACTTAAAGGTGAGGTGCCAAAATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGT
*
606083 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTG----AGGTGCCAATATGCTGA
196 GCCAATATGCTGATTCAAGGCTAGCTATATTGGACTTAAAGGTGATAAAGGTGCCAATATGCTGA
* * *** * * * *
606144 TTCAAGGCTAGCTATATTGGA-CTTAACGGTGATAAAGGTGTCAATATGCTAATACAAGGCC-AG
261 TTCAAGGCCAGCTATATT-CATCCCCAC----AT--A--TGCCGA-AT-C--CT-CCA--CCTA-
** * * * * *
606207 CTATATTCGTCCCCACATAT-GTCGAATCATCCACCTACTAGCTAGGCCCTAAATTGTTGAAAAT
309 CTA-GCTAGGCCCTAAAT-TGGT-GAA--A---A--T--T--C---GCCC------G--GACAA-
* ** * ** * * * *
606271 TGGCCCGGACAAAATGAGGTGTCTACAGTTGCCCCTCTTTACCCGTTTCTGAGTATTAGAAACAT
348 ------------AATGAGGTCTCTACAACTGCCCCTCATTGGCCGCTTCTGAGTATCAGGAACAG
* * *
606336 GCTAAAGACAGATAGACACCATTTTGTCTGCGGCCGCATGTCATGACCTTTGGTGATTAATGCTT
401 GCCAAAGACAAATACACACCATTTTGTCTGCGGCCGCATGTCATGACCTTTGGTGATTAATGCTT
* *
606401 CGCCGTGATGAAGAGTGCATTGGCGACGGTTCCGATGGAAAAATGAGTTTGTAGGGTTTGTCCTC
466 CGCCGTGATGAAGAGTGCATTCGCGACAGTTCCGATGGAAAAATGAGTTTGTAGGGTTTGTCCTC
** * * * *
606466 CCTACTAGGTTTTGGGATTTTCTAAGGCTTGACCTCTTTAGATAGGTGTAGATTGGTGTAGAGTT
531 CCTACTAGGTTTTGAAATTTTCTAAGGCTTGACCACCTTAGAAAGGTGTAGATTGGTGTACAGTT
* *
606531 TGGAACGGATTTTGGAAAAATATGGTCAGTGTTTTGCAATGTGCCACTGTGCAGATTCAAGGCCT
596 TGGAACGGATTTTGGAAGAATATGGTCAGTATTTTGCAATGTGCCACTGTGCAGATTCAAGGCCT
* * *
606596 GCCACACTGGACATAAAGATGATGAGGATGAAGAGTGATAATAGGACCAGTACGTTGATTCACGG
661 GCCACACTAGACTTAAAGATGATGAGGATGAAGAGTGATAAAAGGACCAGTACGTTGATTCACGG
* *
606661 CCAACGATATTGGGTTTAAAGATGAGAAAAAGGATGTCAATATGCTGATTCACGGTCAGCAACAG
726 CCAACGATATTAGGTTTAAAGATGAGAAAAAGGATGTCAATATGCTGATTCACAGTCAGCAACAG
*
606726 TTAGACTTGAAGATGAGAAGAATGCCAATGTGCTGATTCAAGGCCAACGGCATTGGGTATTAAAA
791 TTAGACTTGAAGATGAGAAGAATGCCAATGTGCTGATTCAAGGCCAACGGCATTGGGTTTTAAAA
*
606791 ATGATGAAGGCGCCAATATGCTGAGTCAAGGCCAGCGATATTGGACTTAAAGAC
856 ATGATGAAGGCGCCAATATGCTGAGTCAAGGCCAGCAATATTGGACTTAAAGAC
* * *
606845 GAAGGTGCCAATGTGTTGAGTCAAGGCCAGCGACATTGGACTCAAAGGTGAGGTGCCAATATTCT
1 GAAGGTGCCAATGTGTTGAGTCAAGGCCAGCGACATTGGACTTAAAGATGAGGTGCCAATATGCT
* * *
606910 GATTCAAGGCCAACTATATTGGACTTAAAGGTGAGGTACCACTATGCTAATTCAAGGCCAGCTAT
66 GATTCAAGGCCAACTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAA---CAGCTAT
*
606975 ATTGGACTTAAAGGTGATAAAGGTGCCAATATGCTGATTCAAAGGCCAGCTATATT
128 ATTGGACTTAAAGGTG----AGGTGCCAAAATGCTGATTC-AAGGCCAGCTATATT
607031 CGTCCCCATA
Statistics
Matches: 1872, Mismatches: 115, Indels: 77
0.91 0.06 0.04
Matches are distributed among these distances:
905 36 0.02
906 1 0.00
909 987 0.53
910 2 0.00
911 30 0.02
912 74 0.04
913 5 0.00
914 2 0.00
915 1 0.00
917 1 0.00
918 2 0.00
919 1 0.00
920 5 0.00
921 10 0.01
922 4 0.00
924 1 0.00
927 1 0.00
929 1 0.00
931 1 0.00
936 4 0.00
942 1 0.00
944 4 0.00
957 643 0.34
960 21 0.01
964 19 0.01
965 15 0.01
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.27
Consensus pattern (909 bp):
GAAGGTGCCAATGTGTTGAGTCAAGGCCAGCGACATTGGACTTAAAGATGAGGTGCCAATATGCT
GATTCAAGGCCAACTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAACAGCTATATT
GGACTTAAAGGTGAGGTGCCAAAATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGT
GCCAATATGCTGATTCAAGGCTAGCTATATTGGACTTAAAGGTGATAAAGGTGCCAATATGCTGA
TTCAAGGCCAGCTATATTCATCCCCACATATGCCGAATCCTCCACCTACTAGCTAGGCCCTAAAT
TGGTGAAAATTCGCCCGGACAAAATGAGGTCTCTACAACTGCCCCTCATTGGCCGCTTCTGAGTA
TCAGGAACAGGCCAAAGACAAATACACACCATTTTGTCTGCGGCCGCATGTCATGACCTTTGGTG
ATTAATGCTTCGCCGTGATGAAGAGTGCATTCGCGACAGTTCCGATGGAAAAATGAGTTTGTAGG
GTTTGTCCTCCCTACTAGGTTTTGAAATTTTCTAAGGCTTGACCACCTTAGAAAGGTGTAGATTG
GTGTACAGTTTGGAACGGATTTTGGAAGAATATGGTCAGTATTTTGCAATGTGCCACTGTGCAGA
TTCAAGGCCTGCCACACTAGACTTAAAGATGATGAGGATGAAGAGTGATAAAAGGACCAGTACGT
TGATTCACGGCCAACGATATTAGGTTTAAAGATGAGAAAAAGGATGTCAATATGCTGATTCACAG
TCAGCAACAGTTAGACTTGAAGATGAGAAGAATGCCAATGTGCTGATTCAAGGCCAACGGCATTG
GGTTTTAAAAATGATGAAGGCGCCAATATGCTGAGTCAAGGCCAGCAATATTGGACTTAAAGAC
Found at i:605961 original size:48 final size:48
Alignment explanation
Indices: 605836--606213 Score: 474
Period size: 48 Copynumber: 7.8 Consensus size: 48
605826 TTTTAAAAAT
* * *
605836 GATGAAGGTGCCAATATGCTGAGTCAAGGCTAGCAATATTGGACTTAAA
1 GATG-AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
* * * * * *
605885 GACGAAGGTGCCAATGTGTTGAGTCAAGGCCAGCGACATTGGACTTAAA
1 GATG-AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
*
605934 GATGAGGTGCCAATATGCTGATTCAAGGCCAACTATATTGGACTTAAA
1 GATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
* * *
605982 GGTGAGGTGCCAATATGCTGATTCAA---CAGCTATATTTGACATAAA
1 GATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
* *
606027 GGTGAGGTGCCAAAATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
1 GATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
*
606075 GGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
1 GATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
* * *
606123 GGTGAGGTGCCAATATGCTGATTCAAGGCTAGCTATATTGGACTTAACGGT
1 GATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAA---A
* * * *
606174 GATAAAGGTGTCAATATGCTAATACAAGGCCAGCTATATT
1 GAT-GAGGTGCCAATATGCTGATTCAAGGCCAGCTATATT
606214 CGTCCCCACA
Statistics
Matches: 293, Mismatches: 29, Indels: 11
0.88 0.09 0.03
Matches are distributed among these distances:
45 41 0.14
48 173 0.59
49 46 0.16
51 2 0.01
52 31 0.11
ACGTcount: A:0.32, C:0.16, G:0.26, T:0.26
Consensus pattern (48 bp):
GATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
Found at i:606144 original size:141 final size:144
Alignment explanation
Indices: 605841--606213 Score: 518
Period size: 141 Copynumber: 2.6 Consensus size: 144
605831 AAAATGATGA
* * ** * *
605841 AGGTGCCAATATGCTGAGTCAAGGCTAGCAATATTGGACTTAAAGACGAAGGTGCCAATGTGTTG
1 AGGTGCCAATATGCTGATTCAA-GCTAGCTATATTGGACTTAAAGGTGAAGGTGCCAATATGCTG
* * *
605906 AGTCAAGGCCAGCGACATTGGACTTAAAGATGAGGTGCCAATATGCTGATTCAAGGCCAACTATA
65 ATTCAAGGCCAGCTATATTGGACTTAAAGATGAGGTGCCAATATGCTGATTCAAGGCCAACTATA
605971 TTGGACTTAAAGGTG
130 TTGGACTTAAAGGTG
* * *
605986 AGGTGCCAATATGCTGATTCAA-C-AGCTATATTTGACATAAAGGTG-AGGTGCCAAAATGCTGA
1 AGGTGCCAATATGCTGATTCAAGCTAGCTATATTGGACTTAAAGGTGAAGGTGCCAATATGCTGA
* *
606048 TTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATAT
66 TTCAAGGCCAGCTATATTGGACTTAAAGATGAGGTGCCAATATGCTGATTCAAGGCCAACTATAT
606113 TGGACTTAAAGGTG
131 TGGACTTAAAGGTG
* *
606127 AGGTGCCAATATGCTGATTCAAGGCTAGCTATATTGGACTTAACGGTGATAAAGGTGTCAATATG
1 AGGTGCCAATATGCTGATTCAA-GCTAGCTATATTGGACTTAAAGGTG---AAGGTGCCAATATG
* *
606192 CTAATACAAGGCCAGCTATATT
62 CTGATTCAAGGCCAGCTATATT
606214 CGTCCCCACA
Statistics
Matches: 200, Mismatches: 21, Indels: 11
0.86 0.09 0.05
Matches are distributed among these distances:
141 110 0.55
142 17 0.09
143 2 0.01
144 19 0.09
145 21 0.10
148 31 0.16
ACGTcount: A:0.32, C:0.16, G:0.26, T:0.26
Consensus pattern (144 bp):
AGGTGCCAATATGCTGATTCAAGCTAGCTATATTGGACTTAAAGGTGAAGGTGCCAATATGCTGA
TTCAAGGCCAGCTATATTGGACTTAAAGATGAGGTGCCAATATGCTGATTCAAGGCCAACTATAT
TGGACTTAAAGGTG
Found at i:606834 original size:53 final size:50
Alignment explanation
Indices: 606749--606939 Score: 149
Period size: 49 Copynumber: 3.8 Consensus size: 50
606739 TGAGAAGAAT
* * * *
606749 GCCAATGTGCTGATTCAAGGCCAACGGCATTGGGTA-TTAAAAATGATGAAGGC
1 GCCAATGTGCTGAGTCAAGGCCAGCGACATTGGG-ACTT--AAA-GACGAAGGC
* * *
606802 GCCAATATGCTGAGTCAAGGCCAGCGATATT-GGACTTAAAGACGAAGGT
1 GCCAATGTGCTGAGTCAAGGCCAGCGACATTGGGACTTAAAGACGAAGGC
* * ** *
606851 GCCAATGTGTTGAGTCAAGGCCAGCGACATT-GGACTCAAAGGTG-AGGT
1 GCCAATGTGCTGAGTCAAGGCCAGCGACATTGGGACTTAAAGACGAAGGC
* * * * * *
606899 GCCAATATTCTGATTCAAGGCCAACTATATT-GGACTTAAAG
1 GCCAATGTGCTGAGTCAAGGCCAGCGACATTGGGACTTAAAG
606940 GTGAGGTACC
Statistics
Matches: 116, Mismatches: 21, Indels: 7
0.81 0.15 0.05
Matches are distributed among these distances:
48 37 0.32
49 45 0.39
50 3 0.03
51 1 0.01
52 4 0.03
53 26 0.22
ACGTcount: A:0.31, C:0.18, G:0.27, T:0.23
Consensus pattern (50 bp):
GCCAATGTGCTGAGTCAAGGCCAGCGACATTGGGACTTAAAGACGAAGGC
Found at i:606834 original size:957 final size:958
Alignment explanation
Indices: 604930--607030 Score: 3508
Period size: 957 Copynumber: 2.2 Consensus size: 958
604920 TAAAAATGAT
* * * * * * * *
604930 GAAGGCGCCAATATGCTGAGTCAAGGCCAGCAATATTGGACTTAAAGACGAAGGTGCCAATGTGT
1 GAAGGTGCCAATGTGTTGAGTCAAGGCCAGCGACATTGGACTTAAAGATG-AGGTGCCAATATGC
* * * * * *
604995 TGAGTCAAGGCCAGCGACATTGGACTTAAAGATGAGGTGCCAATATGCTGATTCAAGGCCAACTA
65 TGATTCAAGGCCAACTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAA-G-CAGCTA
*
605060 TATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAA---CAACTATATTGGACTTAAAGGTG
128 TATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTG
605122 AGGTGCCAAAATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGA
193 AGGTGCCAAAATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGA
*
605187 TTCAAGGCTAGCTATATTGGACTTAAAGGTGATAAAGGTGCCAATATGCTGATACAAGGCCAGCT
258 TTCAAGGCTAGCTATATTGGACTTAAAGGTGATAAAGGTGCCAATATGCTAATACAAGGCCAGCT
*
605252 ATATTCATCCCCACATATGTCGAATCCTCCACCTACTAGCTAGGCCCTAAATTGGTGAAAATTGG
323 ATATTCATCCCCACATATGTCGAATCATCCACCTACTAGCTAGGCCCTAAATTGGTGAAAATTGG
* * ** * *
605317 CCCGGACAAAATGTGGTCTCTGCAGCTGCCCCTCTTTGGCCGGTTCTGAGTATCAGGAATAGGCT
388 CCCGGACAAAATGAGGTCTCTACAGCTGCCCCTCTTTACCCGGTTCTGAGTATCAGAAACAGGCT
*
605382 AAAGACAAATATACACCATTTTGTCTGCGGCCGCATGTCATGACCTTTGGTGATTAATGCTTCGC
453 AAAGACAAATAGACACCATTTTGTCTGCGGCCGCATGTCATGACCTTTGGTGATTAATGCTTCGC
605447 CGTGATGAAGAGTGCATTGGCGACAGTTCCGATGGAAAAATGAGTTTGTAGGGTTTGTCCTCCCT
518 CGTGATGAAGAGTGCATTGGCGACAGTTCCGATGGAAAAATGAGTTTGTAGGGTTTGTCCTCCCT
605512 ACTAGGTTTTGGAATTTTCTAAGGCTTGACCTCCTTAGATAGGTGTAGATTGGTGTACAGTTTGG
583 ACTAGGTTTTGGAATTTTCTAAGGCTTGACCTCCTTAGATAGGTGTAGATTGGTGTACAGTTTGG
* * *
605577 AACGGATTTTGGAAGAATATGGTCAGTATTTTGCTATGTGCCATTGTGCAGATTCAAGGCCTGCC
648 AACGGATTTTGGAAAAATATGGTCAGTATTTTGCAATGTGCCACTGTGCAGATTCAAGGCCTGCC
* * *
605642 ACACTAGACTTAAAGATGATGAGGATGAAGAGTGATAAAAGGACTAGTACGTTGATTCGCGGCCA
713 ACACTAGACATAAAGATGATGAGGATGAAGAGTGATAAAAGGACCAGTACGTTGATTCACGGCCA
*
605707 ACGATATTAGGTTTAAAGATGAGAAAGAGGATGTCAATATGCTGATTCACAGTCAGCAACAGTTA
778 ACGATATTAGGTTTAAAGATGAGAAAAAGGATGTCAATATGCTGATTCACAGTCAGCAACAGTTA
*
605772 GACTTGAAGATGAGAAGAATGCCAATGTGCTGATTCAAGGCCAACGGCATTGGGTTTTAAAAATG
843 GACTTGAAGATGAGAAGAATGCCAATGTGCTGATTCAAGGCCAACGGCATTGGGTATTAAAAATG
* *
605837 ATGAAGGTGCCAATATGCTGAGTCAAGGCTAGCAATATTGGACTTAAAGAC
908 ATGAAGGCGCCAATATGCTGAGTCAAGGCCAGCAATATTGGACTTAAAGAC
605888 GAAGGTGCCAATGTGTTGAGTCAAGGCCAGCGACATTGGACTTAAAGATGAGGTGCCAATATGCT
1 GAAGGTGCCAATGTGTTGAGTCAAGGCCAGCGACATTGGACTTAAAGATGAGGTGCCAATATGCT
605953 GATTCAAGGCCAACTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAA-CAGCTATAT
66 GATTCAAGGCCAACTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGCAGCTATAT
* * *
606017 TTGACATAAAGGTGAGGTGCCAAAATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGG
131 TGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGG
*
606082 TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTC
196 TGCCAAAATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTC
* *
606147 AAGGCTAGCTATATTGGACTTAACGGTGATAAAGGTGTCAATATGCTAATACAAGGCCAGCTATA
261 AAGGCTAGCTATATTGGACTTAAAGGTGATAAAGGTGCCAATATGCTAATACAAGGCCAGCTATA
* *
606212 TTCGTCCCCACATATGTCGAATCATCCACCTACTAGCTAGGCCCTAAATTGTTGAAAATTGGCCC
326 TTCATCCCCACATATGTCGAATCATCCACCTACTAGCTAGGCCCTAAATTGGTGAAAATTGGCCC
* * * * *
606277 GGACAAAATGAGGTGTCTACAGTTGCCCCTCTTTACCCGTTTCTGAGTATTAGAAACATGCTAAA
391 GGACAAAATGAGGTCTCTACAGCTGCCCCTCTTTACCCGGTTCTGAGTATCAGAAACAGGCTAAA
*
606342 GACAGATAGACACCATTTTGTCTGCGGCCGCATGTCATGACCTTTGGTGATTAATGCTTCGCCGT
456 GACAAATAGACACCATTTTGTCTGCGGCCGCATGTCATGACCTTTGGTGATTAATGCTTCGCCGT
*
606407 GATGAAGAGTGCATTGGCGACGGTTCCGATGGAAAAATGAGTTTGTAGGGTTTGTCCTCCCTACT
521 GATGAAGAGTGCATTGGCGACAGTTCCGATGGAAAAATGAGTTTGTAGGGTTTGTCCTCCCTACT
* * *
606472 AGGTTTTGGGATTTTCTAAGGCTTGACCTCTTTAGATAGGTGTAGATTGGTGTAGAGTTTGGAAC
586 AGGTTTTGGAATTTTCTAAGGCTTGACCTCCTTAGATAGGTGTAGATTGGTGTACAGTTTGGAAC
*
606537 GGATTTTGGAAAAATATGGTCAGTGTTTTGCAATGTGCCACTGTGCAGATTCAAGGCCTGCCACA
651 GGATTTTGGAAAAATATGGTCAGTATTTTGCAATGTGCCACTGTGCAGATTCAAGGCCTGCCACA
* *
606602 CTGGACATAAAGATGATGAGGATGAAGAGTGATAATAGGACCAGTACGTTGATTCACGGCCAACG
716 CTAGACATAAAGATGATGAGGATGAAGAGTGATAAAAGGACCAGTACGTTGATTCACGGCCAACG
* *
606667 ATATTGGGTTTAAAGATGAGAAAAAGGATGTCAATATGCTGATTCACGGTCAGCAACAGTTAGAC
781 ATATTAGGTTTAAAGATGAGAAAAAGGATGTCAATATGCTGATTCACAGTCAGCAACAGTTAGAC
606732 TTGAAGATGAGAAGAATGCCAATGTGCTGATTCAAGGCCAACGGCATTGGGTATTAAAAATGATG
846 TTGAAGATGAGAAGAATGCCAATGTGCTGATTCAAGGCCAACGGCATTGGGTATTAAAAATGATG
*
606797 AAGGCGCCAATATGCTGAGTCAAGGCCAGCGATATTGGACTTAAAGAC
911 AAGGCGCCAATATGCTGAGTCAAGGCCAGCAATATTGGACTTAAAGAC
* * *
606845 GAAGGTGCCAATGTGTTGAGTCAAGGCCAGCGACATTGGACTCAAAGGTGAGGTGCCAATATTCT
1 GAAGGTGCCAATGTGTTGAGTCAAGGCCAGCGACATTGGACTTAAAGATGAGGTGCCAATATGCT
* * *
606910 GATTCAAGGCCAACTATATTGGACTTAAAGGTGAGGTACCACTATGCTAATTCAAGGCCAGCTAT
66 GATTCAAGGCCAACTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAA-G-CAGCTAT
606975 ATTGGACTTAAAGGTGATAAAGGTGCCAATATGCTGATTCAAAGGCCAGCTATATT
129 ATTGGACTTAAAGGTG----AGGTGCCAATATGCTGATTC-AAGGCCAGCTATATT
607031 CGTCCCCATA
Statistics
Matches: 1065, Mismatches: 67, Indels: 15
0.93 0.06 0.01
Matches are distributed among these distances:
954 41 0.04
957 925 0.87
958 44 0.04
960 21 0.02
964 19 0.02
965 15 0.01
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.27
Consensus pattern (958 bp):
GAAGGTGCCAATGTGTTGAGTCAAGGCCAGCGACATTGGACTTAAAGATGAGGTGCCAATATGCT
GATTCAAGGCCAACTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGCAGCTATAT
TGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGG
TGCCAAAATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTC
AAGGCTAGCTATATTGGACTTAAAGGTGATAAAGGTGCCAATATGCTAATACAAGGCCAGCTATA
TTCATCCCCACATATGTCGAATCATCCACCTACTAGCTAGGCCCTAAATTGGTGAAAATTGGCCC
GGACAAAATGAGGTCTCTACAGCTGCCCCTCTTTACCCGGTTCTGAGTATCAGAAACAGGCTAAA
GACAAATAGACACCATTTTGTCTGCGGCCGCATGTCATGACCTTTGGTGATTAATGCTTCGCCGT
GATGAAGAGTGCATTGGCGACAGTTCCGATGGAAAAATGAGTTTGTAGGGTTTGTCCTCCCTACT
AGGTTTTGGAATTTTCTAAGGCTTGACCTCCTTAGATAGGTGTAGATTGGTGTACAGTTTGGAAC
GGATTTTGGAAAAATATGGTCAGTATTTTGCAATGTGCCACTGTGCAGATTCAAGGCCTGCCACA
CTAGACATAAAGATGATGAGGATGAAGAGTGATAAAAGGACCAGTACGTTGATTCACGGCCAACG
ATATTAGGTTTAAAGATGAGAAAAAGGATGTCAATATGCTGATTCACAGTCAGCAACAGTTAGAC
TTGAAGATGAGAAGAATGCCAATGTGCTGATTCAAGGCCAACGGCATTGGGTATTAAAAATGATG
AAGGCGCCAATATGCTGAGTCAAGGCCAGCAATATTGGACTTAAAGAC
Found at i:606918 original size:48 final size:49
Alignment explanation
Indices: 606795--607030 Score: 269
Period size: 48 Copynumber: 4.8 Consensus size: 49
606785 TTAAAAATGA
* * *
606795 TGAAGGCGCCAATATGCTGAGTCAAGGCCAGCGATATTGGACTTAAAGA
1 TGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGG
* * * * * *
606844 CGAAGGTGCCAATGTGTTGAGTCAAGGCCAGCGACATTGGACTCAAAGG
1 TGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGG
* * *
606893 TG-AGGTGCCAATATTCTGATTCAAGGCCAACTATATTGGACTTAAAGG
1 TGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGG
* * * *
606941 TG-AGGTACCACTATGCTAATTCAAGGCCAGCTATATTGGACTTAAAGG
1 TGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGG
*
606989 TGATAAAGGTGCCAATATGCTGATTCAAAGGCCAGCTATATT
1 TG---AAGGTGCCAATATGCTGATTC-AAGGCCAGCGATATT
607031 CGTCCCCATA
Statistics
Matches: 158, Mismatches: 24, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
48 83 0.53
49 43 0.27
52 17 0.11
53 15 0.09
ACGTcount: A:0.31, C:0.18, G:0.26, T:0.25
Consensus pattern (49 bp):
TGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGG
Found at i:606932 original size:97 final size:97
Alignment explanation
Indices: 606795--607030 Score: 276
Period size: 97 Copynumber: 2.4 Consensus size: 97
606785 TTAAAAATGA
* * * * *
606795 TGAAGGCGCCAATATGCTGAGTCAAGGCCAGCGATATTGGACTTAAAGACGAAGGTGCCAATGTG
1 TGAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGACG-AGGTACCAATATG
* *
606860 TTGAGTCAAGGCCAGCGACATTGGACTCAAAGG
65 CTAAGTCAAGGCCAGCGACATTGGACTCAAAGG
* * ** *
606893 TG-AGGTGCCAATATTCTGATTCAAGGCCAACTATATTGGACTTAAAGGTGAGGTACCACTATGC
1 TGAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGACGAGGTACCAATATGC
* * * *
606957 TAATTCAAGGCCAGCTATATTGGACTTAAAGG
66 TAAGTCAAGGCCAGCGACATTGGACTCAAAGG
606989 TGATAAAGGTGCCAATATGCTGATTCAAAGGCCAGCTATATT
1 TG---AAGGTGCCAATATGCTGATTC-AAGGCCAGCTATATT
607031 CGTCCCCATA
Statistics
Matches: 115, Mismatches: 18, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
96 39 0.34
97 41 0.36
98 2 0.02
100 19 0.17
101 14 0.12
ACGTcount: A:0.31, C:0.18, G:0.26, T:0.25
Consensus pattern (97 bp):
TGAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGACGAGGTACCAATATGC
TAAGTCAAGGCCAGCGACATTGGACTCAAAGG
Found at i:607608 original size:817 final size:816
Alignment explanation
Indices: 605990--608706 Score: 3884
Period size: 817 Copynumber: 3.3 Consensus size: 816
605980 AAGGTGAGGT
* * * * ** ** * *
605990 GCCAATATGCTGATTCAA---CAGCTATATTTGACATAAAGGTG-AGGTGCCAAAATGCTGATTC
1 GCCAATATGCTGAGTCAAGGCCAGCGATATTGGACTTAAAGACGAAGGTGCCAATGTGTTGAGTC
* * *
606051 AAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGG
66 AAGGCCAGCGACATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAACTATATTGG
* *
606116 ACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCTAGCTATATTGGACTTAACGGTGATAAAG
131 ACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGATAAAG
* * * *
606181 GTGTCAATATGCTAATACAAGGCCAGCTATATTCGTCCCCACATATGTCGAATCATCCACCTACT
196 GTGCCAATATGCTGATTCAAGGCCAGCTATATTCGTCCCCACATATGTCGAATCATCCACCAACT
*
606246 AGCTAGGCCCTAAATTGTTGAAAATTGGCCCGGACAAAATGAGGTGTCTACAGTTGCCCCTCTTT
261 AGCTAGGCCCTAAATTGTTAAAAATTGGCCCGGACAAAATGAGGTGTCTACAGTTGCCCCTCTTT
* * *
606311 ACCCGTTTCTGAGTATTAGAAACATGCTAAAGACAGATAGACACCATTTTGTCTGCGGCCGCATG
326 ACCCGTTTCTGAGTATCAGAAACATGCCAAAGACAAATAGACACCATTTTGTCTGCGGCCGCATG
*
606376 TCATGACCTTTGGTGATTAATGCTTCGCCGTGATGAAGAGTGCATTGGCGACGGTTCCGATGGAA
391 TCATGACCTTTGGTGATTAATGCTTCGCCGTGATGAAGAGTGCATTGGCGACGGTTCCGAAGGAA
*
606441 AAATGAGTTTGTAGGGTTTGTCCTCCCTACTAGGTTTTGGGATTTTCTAAGGCTTGACCTCTTTA
456 AAATGAGTTTGTAGGGTTTGTCCTCCCGACTAGGTTTTGGGATTTTCTAAGGCTTGACCTCTTTA
*
606506 GATAGGTGTAGATTGGTGTAGAGTTTGGAACGGATTTTGGAAAAATATGGTCAGTGTTTTGCAAT
521 GATAGGTGTAGATTGGTGTAGAGTTTGGAACGGATTTTGGAAAAATATGGTCAGTATTTTGCAAT
606571 GTGCCACTGTGCAGATTCAAGGCCTGCCACACTGGACATAAAGATGATGAGGATGAAGAGTGATA
586 GTGCCACTGTGCAGATTCAAGGCCTGCCACACTGGACATAAAGATGATGAGGATGAAGAGTGATA
* * *
606636 ATAGGACCAGTACGTTGATTCACGGCCAACGATATTGGGTTTAAAGATGAGAAAAAGGATGTCAA
651 AAAGAACCAGTACGTTGATTCACGGCCAACGATATAGGGTTTAAAGATGAGAAAAAGGATGTCAA
606701 TATGCTGATTCACGGTCAGCAACAGTTAGACTTGAAGATGAGAAGAATGCCAATGTGCTGATTCA
716 TATGCTGATTCACGGTCAGCAACAGTTAGACTTGAAGATGAGAAGAATGCCAATGTGCTGATTCA
606766 AGGCCAACGGCATTGGGTATTAAAAATGATGAAGGC
781 AGGCCAACGGCATTGGGTATTAAAAATGATGAAGGC
606802 GCCAATATGCTGAGTCAAGGCCAGCGATATTGGACTTAAAGACGAAGGTGCCAATGTGTTGAGTC
1 GCCAATATGCTGAGTCAAGGCCAGCGATATTGGACTTAAAGACGAAGGTGCCAATGTGTTGAGTC
* *
606867 AAGGCCAGCGACATTGGACTCAAAGGTGAGGTGCCAATATTCTGATTCAAGGCCAACTATATTGG
66 AAGGCCAGCGACATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAACTATATTGG
* * *
606932 ACTTAAAGGTGAGGTACCACTATGCTAATTCAAGGCCAGCTATATTGGACTTAAAGGTGATAAAG
131 ACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGATAAAG
* * *
606997 GTGCCAATATGCTGATTCAAAGGCCAGCTATATTCGTCCCCATATATGTCGAATCCTCTACCAAC
196 GTGCCAATATGCTGATTC-AAGGCCAGCTATATTCGTCCCCACATATGTCGAATCATCCACCAAC
607062 TAGCTAGGCCCTAAATTGTTAAAAATTGGCCCGGACAAAATGAGGTGTCTACAGTTGCCCCTCTT
260 TAGCTAGGCCCTAAATTGTTAAAAATTGGCCCGGACAAAATGAGGTGTCTACAGTTGCCCCTCTT
** * * *
607127 TGGCTGTTTCTGAGTATCAGGAACATGCCAAAGACAAATAGACACCATTTTGTCTGCGGTCGCAT
325 TACCCGTTTCTGAGTATCAGAAACATGCCAAAGACAAATAGACACCATTTTGTCTGCGGCCGCAT
607192 GTCATGACCTTTGGTGATTAATGCTTCGCCGTGATGAAGAGTGCATTGGCGACGGTTCCGAAGGA
390 GTCATGACCTTTGGTGATTAATGCTTCGCCGTGATGAAGAGTGCATTGGCGACGGTTCCGAAGGA
*
607257 AAAATGAGTTTGTAGGGTTTGTCCTCCGGACTAGGTTTTGGGATTTTCTAAGGCTTGACCTCTTT
455 AAAATGAGTTTGTAGGGTTTGTCCTCCCGACTAGGTTTTGGGATTTTCTAAGGCTTGACCTCTTT
*
607322 AGATAGGTGTAGATTGGTGTAGAGTTTGGAACGGATTTTGGAAGAATATGGTCAGTATTTTGCAA
520 AGATAGGTGTAGATTGGTGTAGAGTTTGGAACGGATTTTGGAAAAATATGGTCAGTATTTTGCAA
*
607387 TGTGCCA-TAGTGCAGATTCAAGGCCTGCCACACTGGACTTAAAGATGATGAGGATGAAGAGTGA
585 TGTGCCACT-GTGCAGATTCAAGGCCTGCCACACTGGACATAAAGATGATGAGGATGAAGAGTGA
* *
607451 TAAAATAACCAGTATGTTGATTCACGGCCAACGATATAGGGTTTAAAGATGAGAAAAAGGATGTC
649 TAAAAGAACCAGTACGTTGATTCACGGCCAACGATATAGGGTTTAAAGATGAGAAAAAGGATGTC
607516 AATATGCTGATTCACGGTCAGCAACAGTTAGACTTGAAGATGAGAAGAATGCCAATGTGCTGATT
714 AATATGCTGATTCACGGTCAGCAACAGTTAGACTTGAAGATGAGAAGAATGCCAATGTGCTGATT
*
607581 CAAGGCCAACGGCATTGGGTTTTAAAAATGATGAAGGC
779 CAAGGCCAACGGCATTGGGTATTAAAAATGATGAAGGC
*
607619 GCCAATATGCTGAGTCAAGGCCAGCGATATTGGACTTAAAGACAAAGGTGCCAATGTGTTGAGTC
1 GCCAATATGCTGAGTCAAGGCCAGCGATATTGGACTTAAAGACGAAGGTGCCAATGTGTTGAGTC
* *
607684 AAGGCCAGCGACATTAGACTTAAAGATGAGGTGCCAATATGCTGATTCAAGGCCAACTATATTGG
66 AAGGCCAGCGACATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAACTATATTGG
*
607749 ACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTCAAGGTG----AG
131 ACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGATAAAG
*
607810 GTGCCAAAATGCTGATTCAAGGCCAGCTATATTGGACATAAAGGTGATAAAGGTGCCAATATGCT
196 GTGCCAATATGCTGATTCAAGGCCAGCTATATT---C-----------------G------T-C-
* * * **
607875 GATTCAAGGCCAGCTATATTCGTCCCCGCATATGTCGAATCCTCCACCTA-CTAGCTAGGCCCTA
233 ----C----CCA-C-ATA-T-GT---CG-A-A--TC--ATCCACCAACTAGCTAG---GCCCTAA
* * * * * * * * **
607939 AAT-TGTTAAAAATTGGCCCGGACAAAATGAGGTGTCTACAGCTACCCCTCTTTGGCCGTTTCTG
274 ATTGT-TAAAAATTGGCCCG-GACAAAATGAGGTGTCTACAGTTGCCCCTCTTTACCCGTTTCTG
* * * * * * *
608003 AGTATCA-AGAATAGGCTAAAGACAAATATACACCATTTTGTTTGTGGCCGCATGTCATAACCTT
337 AGTATCAGA-AACATGCCAAAGACAAATAGACACCATTTTGTCTGCGGCCGCATGTCATGACCTT
* * *
608067 TGGTGATTAATGCTTCGCCGTGATGAAGAGTGCATTGGCAACGGTTCTGATGGAAAAATGAGTTT
401 TGGTGATTAATGCTTCGCCGTGATGAAGAGTGCATTGGCGACGGTTCCGAAGGAAAAATGAGTTT
* * * *
608132 GTAGTGTTTGTCCTCCCTACTAGGTTTTGGAATTTTCTAAGGCTTGACCTCCTTAGATAGGTGTA
466 GTAGGGTTTGTCCTCCCGACTAGGTTTTGGGATTTTCTAAGGCTTGACCTCTTTAGATAGGTGTA
* * * *
608197 GATTGGTGTACAATTTGGAATGGATTTTGGAAGAATATGGTCAGTATTTTGCAATGTGCCACTGT
531 GATTGGTGTAGAGTTTGGAACGGATTTTGGAAAAATATGGTCAGTATTTTGCAATGTGCCACTGT
* * *
608262 GCAGATTCAAGGCCTGCCACACTAGACTTAAAGATGATGAGGATGAAGAGTGATAAAAGGACCAG
596 GCAGATTCAAGGCCTGCCACACTGGACATAAAGATGATGAGGATGAAGAGTGATAAAAGAACCAG
* * *
608327 TACGTTGATTCACGGCCAATGATATTA-GGTTTAAAAATGAGAAAAAAGATGTCAATATGCTGAT
661 TACGTTGATTCACGGCCAACGATA-TAGGGTTTAAAGATGAGAAAAAGGATGTCAATATGCTGAT
* * *
608391 TCACAGTCAGCAACAGTTAGACTGGAAGATCAGAAGAATGCCAATGTGCTGATTCAAGGCCAACG
725 TCACGGTCAGCAACAGTTAGACTTGAAGATGAGAAGAATGCCAATGTGCTGATTCAAGGCCAACG
* *
608456 GCATTGGGTTTTAAAAATGTTGAAGGC
790 GCATTGGGTATTAAAAATGATGAAGGC
*
608483 GCCAATATGCTGAGTCAAGGCCAGCAATATTGGACTTAAAGACGAAGGTGCCAATGTGTTGAGTC
1 GCCAATATGCTGAGTCAAGGCCAGCGATATTGGACTTAAAGACGAAGGTGCCAATGTGTTGAGTC
* *
608548 AAGGCCAGCGACATTAGACTTAAAGATGAGGTGCCAATATGCTGATTCAAGGCCAACTATATTGG
66 AAGGCCAGCGACATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAACTATATTGG
*
608613 ACTTAAAGGTGAGGTGCCAATATGCTGATTCGAGGCCAGCTATATTGGACTTAAAGGTG----AG
131 ACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGATAAAG
608674 GTGCCAATATGCTGATTCAAGGCCAGCTATATT
196 GTGCCAATATGCTGATTCAAGGCCAGCTATATT
608707 GAACTTAAAG
Statistics
Matches: 1731, Mismatches: 111, Indels: 74
0.90 0.06 0.04
Matches are distributed among these distances:
812 32 0.02
813 19 0.01
815 19 0.01
816 152 0.09
817 756 0.44
832 1 0.00
838 1 0.00
839 1 0.00
844 1 0.00
848 3 0.00
850 3 0.00
851 1 0.00
852 2 0.00
855 2 0.00
856 1 0.00
857 1 0.00
859 2 0.00
860 4 0.00
861 8 0.00
862 1 0.00
863 15 0.01
864 703 0.41
865 3 0.00
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.27
Consensus pattern (816 bp):
GCCAATATGCTGAGTCAAGGCCAGCGATATTGGACTTAAAGACGAAGGTGCCAATGTGTTGAGTC
AAGGCCAGCGACATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAACTATATTGG
ACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGATAAAG
GTGCCAATATGCTGATTCAAGGCCAGCTATATTCGTCCCCACATATGTCGAATCATCCACCAACT
AGCTAGGCCCTAAATTGTTAAAAATTGGCCCGGACAAAATGAGGTGTCTACAGTTGCCCCTCTTT
ACCCGTTTCTGAGTATCAGAAACATGCCAAAGACAAATAGACACCATTTTGTCTGCGGCCGCATG
TCATGACCTTTGGTGATTAATGCTTCGCCGTGATGAAGAGTGCATTGGCGACGGTTCCGAAGGAA
AAATGAGTTTGTAGGGTTTGTCCTCCCGACTAGGTTTTGGGATTTTCTAAGGCTTGACCTCTTTA
GATAGGTGTAGATTGGTGTAGAGTTTGGAACGGATTTTGGAAAAATATGGTCAGTATTTTGCAAT
GTGCCACTGTGCAGATTCAAGGCCTGCCACACTGGACATAAAGATGATGAGGATGAAGAGTGATA
AAAGAACCAGTACGTTGATTCACGGCCAACGATATAGGGTTTAAAGATGAGAAAAAGGATGTCAA
TATGCTGATTCACGGTCAGCAACAGTTAGACTTGAAGATGAGAAGAATGCCAATGTGCTGATTCA
AGGCCAACGGCATTGGGTATTAAAAATGATGAAGGC
Found at i:607735 original size:48 final size:48
Alignment explanation
Indices: 607515--607894 Score: 337
Period size: 48 Copynumber: 7.6 Consensus size: 48
607505 AAAAGGATGT
* * * * * *
607515 CAATATGCTGATTCACGGTCAGCAACAGTTAGACTTGAAGATGAGAAGAATGC
1 CAATATGCTGATTCAAGGCCAGCGATA-TTGGACTTAAAGATGAG--G--TGC
* * ** ** *
607568 CAATGTGCTGATTCAAGGCCAACGGCATTGGGTTTTAAAAATGATGAAGGCGC
1 CAATATGCTGATTCAAGGCCAGCGATATT-GGACTT--AAA-GATG-AGGTGC
* **
607621 CAATATGCTGAGTCAAGGCCAGCGATATTGGACTTAAAGACAAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGA-TGAGGTGC
* * * * *
607670 CAATGTGTTGAGTCAAGGCCAGCGACATTAGACTTAAAGATGAGGTGC
1 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAGGTGC
* * *
607718 CAATATGCTGATTCAAGGCCAACTATATTGGACTTAAAGGTGAGGTGC
1 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAGGTGC
* * *
607766 CAATATGCTGATTCAAGGCCAGCTATATTGGACTTCAAGGTGAGGTGC
1 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAGGTGC
* * * *
607814 CAAAATGCTGATTCAAGGCCAGCTATATTGGACATAAAGGTGATAAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAA---GAT-GAGGTGC
*
607866 CAATATGCTGATTCAAGGCCAGCTATATT
1 CAATATGCTGATTCAAGGCCAGCGATATT
607895 CGTCCCCGCA
Statistics
Matches: 274, Mismatches: 43, Indels: 21
0.81 0.13 0.06
Matches are distributed among these distances:
48 127 0.46
49 43 0.16
50 3 0.01
51 2 0.01
52 40 0.15
53 50 0.18
55 3 0.01
56 4 0.01
57 2 0.01
ACGTcount: A:0.32, C:0.17, G:0.26, T:0.24
Consensus pattern (48 bp):
CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAGGTGC
Found at i:607783 original size:26 final size:26
Alignment explanation
Indices: 607754--607831 Score: 60
Period size: 26 Copynumber: 3.2 Consensus size: 26
607744 ATTGGACTTA
607754 AAGGTGAGGTGCCAATATGCTGATTC
1 AAGGTGAGGTGCCAATATGCTGATTC
** *
607780 AAGGCCA---G-CTATAT--TGGACTTC
1 AAGGTGAGGTGCCAATATGCT-GA-TTC
*
607802 AAGGTGAGGTGCCAAAATGCTGATTC
1 AAGGTGAGGTGCCAATATGCTGATTC
607828 AAGG
1 AAGG
607832 CCAGCTATAT
Statistics
Matches: 37, Mismatches: 7, Indels: 16
0.62 0.12 0.27
Matches are distributed among these distances:
20 1 0.03
21 2 0.05
22 13 0.35
23 1 0.03
25 1 0.03
26 16 0.43
27 2 0.05
28 1 0.03
ACGTcount: A:0.29, C:0.17, G:0.29, T:0.24
Consensus pattern (26 bp):
AAGGTGAGGTGCCAATATGCTGATTC
Found at i:608599 original size:48 final size:48
Alignment explanation
Indices: 608483--608854 Score: 537
Period size: 48 Copynumber: 7.6 Consensus size: 48
608473 TGTTGAAGGC
* * **
608483 GCCAATATGCTGAGTCAAGGCCAGCAATATTGGACTTAAAGACGAAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTG-AGGT
* * * * * * *
608532 GCCAATGTGTTGAGTCAAGGCCAGCGACATTAGACTTAAAGATGAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGT
*
608580 GCCAATATGCTGATTCAAGGCCAACTATATTGGACTTAAAGGTGAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGT
*
608628 GCCAATATGCTGATTCGAGGCCAGCTATATTGGACTTAAAGGTGAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGT
*
608676 GCCAATATGCTGATTCAAGGCCAGCTATATTGAACTTAAAGGTGAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGT
* * *
608724 GCCAAAAGGCTGATTCAAGGCCAGTTATATTGGACTTAAAGGTGAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGT
*
608772 GCCAATATGCTGATTCAATGCCAGCTATATTGGACTTAAAGGTGATAAAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTG----AGGT
608824 GCCAATATGCTGATTCAAGGCCAGCTATATT
1 GCCAATATGCTGATTCAAGGCCAGCTATATT
608855 CGTACCCACA
Statistics
Matches: 292, Mismatches: 27, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
48 220 0.75
49 38 0.13
52 34 0.12
ACGTcount: A:0.31, C:0.17, G:0.26, T:0.26
Consensus pattern (48 bp):
GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGT
Found at i:609557 original size:48 final size:48
Alignment explanation
Indices: 609432--609809 Score: 438
Period size: 48 Copynumber: 7.8 Consensus size: 48
609422 TTTTAAAAAT
* * *
609432 GATGAAGGCGCCAATATGCTGAGTCAAGGCCAGCGATATTGGACTTAAA
1 GATG-AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
* * * * * *
609481 GACGAAGGTGCCAATGTGTTGAGTCAAGGCCAGCGACATTGGACTTAAA
1 GATG-AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
* *
609530 GATGAGGTGCCAATATGCTGATTCAAGGCCAACTATATTGGACTTAAT
1 GATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
* * * * *
609578 GGTAAGATGCCAATATGCTGATTGAA---CAGCTATATTTGACTTAAA
1 GATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
* *
609623 GGTGAGGTGCCAAAATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
1 GATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
* * * *
609671 GGTGAGGGGCCAATATGCTGATTCAAGGCAAGTTATATTGGACTTAAA
1 GATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
* *
609719 GGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAACGGT
1 GATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAA---A
* * *
609770 GATAAAGGTGCCAATATGCTGATACAAGGCTAGCTATATT
1 GAT-GAGGTGCCAATATGCTGATTCAAGGCCAGCTATATT
609810 CGTCTCCACA
Statistics
Matches: 285, Mismatches: 37, Indels: 11
0.86 0.11 0.03
Matches are distributed among these distances:
45 38 0.13
48 165 0.58
49 47 0.16
51 2 0.01
52 33 0.12
ACGTcount: A:0.31, C:0.16, G:0.26, T:0.26
Consensus pattern (48 bp):
GATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
Found at i:609647 original size:93 final size:95
Alignment explanation
Indices: 609441--609809 Score: 438
Period size: 93 Copynumber: 3.8 Consensus size: 95
609431 TGATGAAGGC
* * * * * *
609441 GCCAATATGCTGAGTCAAGGCCAGCGATATTGGACTTAAAGACG-AAGGTGCCAATGTGTTGAGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAATG--GTAAGGTGCCAATATGCTGATT
* * * *
609505 CAAGGCCAGCGACATTGGACTTAAAGATGAGGT
64 CAA-GCAAGCTATATTGGACTTAAAGGTGAGGT
* * *
609538 GCCAATATGCTGATTCAAGGCCAACTATATTGGACTTAATGGTAAGATGCCAATATGCTGATTGA
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAATGGTAAGGTGCCAATATGCTGATTCA
*
609603 A-C-AGCTATATTTGACTTAAAGGTGAGGT
66 AGCAAGCTATATTGGACTTAAAGGTGAGGT
* * * *
609631 GCCAAAATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGGGCCAATATGCTGATTCA
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAATGGTAAGGTGCCAATATGCTGATTCA
*
609696 AGGCAAGTTATATTGGACTTAAAGGTGAGGT
66 A-GCAAGCTATATTGGACTTAAAGGTGAGGT
*
609727 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAACGGTGATAAAGGTGCCAATATGCTGA
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAA---TGGT-AAGGTGCCAATATGCTGA
* *
609792 TACAAGGCTAGCTATATT
62 TTCAA-GCAAGCTATATT
609810 CGTCTCCACA
Statistics
Matches: 234, Mismatches: 30, Indels: 13
0.84 0.11 0.05
Matches are distributed among these distances:
93 81 0.35
94 1 0.00
95 2 0.01
96 80 0.34
97 37 0.16
99 2 0.01
100 31 0.13
ACGTcount: A:0.31, C:0.16, G:0.26, T:0.26
Consensus pattern (95 bp):
GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAATGGTAAGGTGCCAATATGCTGATTCA
AGCAAGCTATATTGGACTTAAAGGTGAGGT
Found at i:609733 original size:189 final size:192
Alignment explanation
Indices: 609441--609792 Score: 512
Period size: 189 Copynumber: 1.8 Consensus size: 192
609431 TGATGAAGGC
* * * *
609441 GCCAATATGCTGAGTCAAGGCCAGCGATATTGGACTTAAAGACGAAGGTGCCAATGTGTTGAGTC
1 GCCAAAATGCTGAGTCAAGGCCAGCGATATTGGACTTAAAGACGAAGGGGCCAATATGCTGAGTC
*
609506 AAGGCCAGCGACATTGGACTTAAAGATGAGGTGCCAATATGCTGATTCAAGGCCAACTATATTGG
66 AAGGCAAGCGACATTGGACTTAAAGATGAGGTGCCAATATGCTGATTCAAGGCCAACTATATTGG
*
609571 ACTTAA-TGGT-AAGATGCCAATATGCTGATTGAACAGCTATATTTGACTTAAAGGTGAGGT
131 ACTTAAGTGATAAAGATGCCAATATGCTGATTGAACAGCTATATTTGACTTAAAGGTGAGGT
* * ** *
609631 GCCAAAATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTG-AGGGGCCAATATGCTGATTC
1 GCCAAAATGCTGAGTCAAGGCCAGCGATATTGGACTTAAAGACGAAGGGGCCAATATGCTGAGTC
** * * *
609695 AAGGCAAGTTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGG
66 AAGGCAAGCGACATTGGACTTAAAGATGAGGTGCCAATATGCTGATTCAAGGCCAACTATATTGG
*
609760 ACTTAACGGTGATAAAGGTGCCAATATGCTGAT
131 ACTTAA--GTGATAAAGATGCCAATATGCTGAT
609793 ACAAGGCTAG
Statistics
Matches: 141, Mismatches: 17, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
189 81 0.57
190 39 0.28
192 3 0.02
193 18 0.13
ACGTcount: A:0.31, C:0.16, G:0.26, T:0.26
Consensus pattern (192 bp):
GCCAAAATGCTGAGTCAAGGCCAGCGATATTGGACTTAAAGACGAAGGGGCCAATATGCTGAGTC
AAGGCAAGCGACATTGGACTTAAAGATGAGGTGCCAATATGCTGATTCAAGGCCAACTATATTGG
ACTTAAGTGATAAAGATGCCAATATGCTGATTGAACAGCTATATTTGACTTAAAGGTGAGGT
Found at i:609740 original size:141 final size:143
Alignment explanation
Indices: 609441--609809 Score: 456
Period size: 141 Copynumber: 2.5 Consensus size: 143
609431 TGATGAAGGC
* * ** * * *
609441 GCCAATATGCTGAGTCAAGGCCAGCGATATTGGACTTAAAGACGAAGGTGCCAATGTGTTGAGTC
1 GCCAATATGCTGATTCAA-G-CAGCTATATTGGACTTAAAGGTGAAGGTGCCAATATGCTGATTC
* * *
609506 AAGGCCAGCGACATTGGACTTAAAGATGAGGTGCCAATATGCTGATTCAAGGCCAACTATATTGG
64 AAGGCCAGCTATATTGGACTTAAAGATGAGGGGCCAATATGCTGATTCAAGGCCAACTATATTGG
*
609571 ACTTAATGGTAAGAT
129 ACTTAAAGGTAAGAT
* * *
609586 GCCAATATGCTGATTGAA-CAGCTATATTTGACTTAAAGGTG-AGGTGCCAAAATGCTGATTCAA
1 GCCAATATGCTGATTCAAGCAGCTATATTGGACTTAAAGGTGAAGGTGCCAATATGCTGATTCAA
* *
609649 GGCCAGCTATATTGGACTTAAAGGTGAGGGGCCAATATGCTGATTCAAGG-CAAGTTATATTGGA
66 GGCCAGCTATATTGGACTTAAAGATGAGGGGCCAATATGCTGATTCAAGGCCAA-CTATATTGGA
* *
609713 CTTAAAGGTGAGGT
130 CTTAAAGGTAAGAT
*
609727 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAACGGTGATAAAGGTGCCAATATGCTGA
1 GCCAATATGCTGATTCAA-G-CAGCTATATTGGACTTAAAGGTG---AAGGTGCCAATATGCTGA
* *
609792 TACAAGGCTAGCTATATT
61 TTCAAGGCCAGCTATATT
609810 CGTCTCCACA
Statistics
Matches: 192, Mismatches: 24, Indels: 13
0.84 0.10 0.06
Matches are distributed among these distances:
140 3 0.02
141 101 0.53
142 19 0.10
144 21 0.11
145 16 0.08
148 32 0.17
ACGTcount: A:0.31, C:0.16, G:0.26, T:0.26
Consensus pattern (143 bp):
GCCAATATGCTGATTCAAGCAGCTATATTGGACTTAAAGGTGAAGGTGCCAATATGCTGATTCAA
GGCCAGCTATATTGGACTTAAAGATGAGGGGCCAATATGCTGATTCAAGGCCAACTATATTGGAC
TTAAAGGTAAGAT
Found at i:610500 original size:956 final size:957
Alignment explanation
Indices: 607958--611672 Score: 6585
Period size: 956 Copynumber: 3.9 Consensus size: 957
607948 AAATTGGCCC
* * * *
607958 GGACAAAATGAGGTGTCTACAGCTACCCCTCTTTGGCCGTTTCTGAGTATCAAGAATAGGCTAAA
1 GGACAAAATGAGGTGTCTACAGCTACCCCTCTTTGGCCGTTTCTAACTATCAAGAACAGGCCAAA
* * *
608023 GACAAATATACACCATTTTGTTTGTGGCCGCATGTCATAACCTTTGGTGATTAATGCTTCGCCGT
66 AACAAATATACACCATTTTGTCTGCGGCCGCATGTCATAACCTTTGGTGATTAATGCTTCGCCGT
* *
608088 GATGAAGAGTGCATTGGCAACGGTTCTGATGGAAAAATGAGTTTGTAGTGTTTGTCCTCCCTACT
131 GATGAAGAGTGCATTGGCAACGGTTCCGATGGAAAAATGAGTTTGTAGGGTTTGTCCTCCCTACT
*
608153 AGGTTTTGGAATTTTCTAAGGCTTGACCTCCTTAGATAGGTGTAGATTGGTGTACAATTTGGAAT
196 AGGTTTTGGAATTTTCTAAGGCTTGACCTCCTTAGATAGGTGTAGATTGGTGTACAATTTGGAAC
608218 GGATTTTGGAAGAATATGGTCAGTATTTTGCAATGTGCCACTGTGCAGATTCAAGGCCTGCCACA
261 GGATTTTGGAAGAATATGGTCAGTATTTTGCAATGTGCCACTGTGCAGATTCAAGGCCTGCCACA
*
608283 CTAGACTTAAAGATGATGAGGATGAAGAGTGATAAAAGGACCAGTACGTTGATTCACGGCCAATG
326 CTAAACTTAAAGATGATGAGGATGAAGAGTGATAAAAGGACCAGTACGTTGATTCACGGCCAATG
* *
608348 ATATTAGGTTTAAAAATGAGAAAAAAGATGTCAATATGCTGATTCACAGTCAGCAACAGTTAGAC
391 ATATTAGGTTTAAAGATGAGAAAAAGGATGTCAATATGCTGATTCACAGTCAGCAACAGTTAGAC
* * *
608413 TGGAAGATCAGAAGAATGCCAATGTGCTGATTCAAGGCCAACGGCATTGGGTTTTAAAAATGTTG
456 TGGAAGATCAGAAGAATGCCAATATGCTGATTAAAGGCCAACGGCATTGGGTTTTAAAAATGATG
*
608478 AAGGCGCCAATATGCTGAGTCAAGGCCAGCAATATTGGACTTAAAGACGAAGGTGCCAATGTGTT
521 AAGGCGCCAATATGCTGAGTCAAGGCCAGCGATATTGGACTTAAAGACGAAGGTGCCAATGTGTT
*
608543 GAGTCAAGGCCAGCGACATTAGACTTAAAGATGAGGTGCCAATATGCTGATTCAAGGCCAACTAT
586 GAGTCAAGGCCAGCGACATTGGACTTAAAGATGAGGTGCCAATATGCTGATTCAAGGCCAACTAT
* *
608608 ATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCGAGGCCAGCTATATTGGACTTAAAGGTGA
651 ATTGGACTTAAAGGTAAGGTGCCAATATGCTGATT-GA--ACAGCTATATTGGACTTAAAGGTGA
* * *
608673 GGTGCCAATATGCTGATTCAAGGCCAGCTATATTGAACTTAAAGGTGAGGTGCCAAAAGGCTGAT
713 GGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGAT
*
608738 TCAAGGCCAGTTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAATGCCAGCTATATT
778 TCAAGGCCAGTTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATT
*
608803 GGACTTAAAGGTGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTCGTAC-CCACATA
843 GGACTTAAAGGTGATAAAGGTGCCAATATGCTGATACAAGGCCAGCTATATTCGT-CTCCACATA
*
608867 TGTTGAATCCTCCACCTACTAGCTAGGCCCTAAATTGTTGAAAATTGGCCC
907 TGTCGAATCCTCCACCTACTAGCTAGGCCCTAAATTGTTGAAAATTGGCCC
* * * *
608918 GGACAAAATGAGGTGTCTACAGCTACCCCTCTTTGGCCGTTTCTGAGTATCAAGAATAGGCTAAA
1 GGACAAAATGAGGTGTCTACAGCTACCCCTCTTTGGCCGTTTCTAACTATCAAGAACAGGCCAAA
* *
608983 GACAAATATACACCATTTTGTTTGCGGCCGCATGTCATAACCTTTGGTGATTAATGCTTCGCCGT
66 AACAAATATACACCATTTTGTCTGCGGCCGCATGTCATAACCTTTGGTGATTAATGCTTCGCCGT
* *
609048 GATGAAGAGTGCATTGGCAACGGTTCTGATGGAAAAATGAGTTTGTAGTGTTTGTCCTCCCTACT
131 GATGAAGAGTGCATTGGCAACGGTTCCGATGGAAAAATGAGTTTGTAGGGTTTGTCCTCCCTACT
609113 AGG-TTTGGAATTTTCTAAGGCTTGACCTCCTTAGATAGGTGTAGATTGGTGTACAATTTGGAAC
196 AGGTTTTGGAATTTTCTAAGGCTTGACCTCCTTAGATAGGTGTAGATTGGTGTACAATTTGGAAC
609177 GGATTTTGGAAGAATATGGTCAGTATTTTGCAATGTGCCACTGTGCAGATTCAAGGCCTGCCACA
261 GGATTTTGGAAGAATATGGTCAGTATTTTGCAATGTGCCACTGTGCAGATTCAAGGCCTGCCACA
609242 CTAAACTTAAAGATGATGAGGATGAAGAGTGATAAAAGGACCAGTACGTTGATTCACGGCCAATG
326 CTAAACTTAAAGATGATGAGGATGAAGAGTGATAAAAGGACCAGTACGTTGATTCACGGCCAATG
609307 ATATTAGGTTTAAAGATGAGAAAAAGGATGTCAATATGCTGATTCAC-GTCAGCAACAGTTAGAC
391 ATATTAGGTTTAAAGATGAGAAAAAGGATGTCAATATGCTGATTCACAGTCAGCAACAGTTAGAC
609371 TGGAAGATCAGAAGAATGCCAATATGCTGATTAAAGGCCAACGGCATTGGGTTTTAAAAATGATG
456 TGGAAGATCAGAAGAATGCCAATATGCTGATTAAAGGCCAACGGCATTGGGTTTTAAAAATGATG
609436 AAGGCGCCAATATGCTGAGTCAAGGCCAGCGATATTGGACTTAAAGACGAAGGTGCCAATGTGTT
521 AAGGCGCCAATATGCTGAGTCAAGGCCAGCGATATTGGACTTAAAGACGAAGGTGCCAATGTGTT
609501 GAGTCAAGGCCAGCGACATTGGACTTAAAGATGAGGTGCCAATATGCTGATTCAAGGCCAACTAT
586 GAGTCAAGGCCAGCGACATTGGACTTAAAGATGAGGTGCCAATATGCTGATTCAAGGCCAACTAT
* * *
609566 ATTGGACTTAATGGTAAGATGCCAATATGCTGATTGAACAGCTATATTTGACTTAAAGGTGAGGT
651 ATTGGACTTAAAGGTAAGGTGCCAATATGCTGATTGAACAGCTATATTGGACTTAAAGGTGAGGT
* *
609631 GCCAAAATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGGGCCAATATGCTGATTCA
716 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCA
*
609696 AGGCAAGTTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGA
781 AGGCCAGTTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGA
* *
609761 CTTAACGGTGATAAAGGTGCCAATATGCTGATACAAGGCTAGCTATATTCGTCTCCACATATGTC
846 CTTAAAGGTGATAAAGGTGCCAATATGCTGATACAAGGCCAGCTATATTCGTCTCCACATATGTC
*
609826 GAATCCTCCACCTACTAGCTAGTCCCTAAATTGTTGAAAATTGGCCC
911 GAATCCTCCACCTACTAGCTAGGCCCTAAATTGTTGAAAATTGGCCC
* *
609873 GGACAAAATGAGGTGTCTACAGCTGCCCCTCTTTGGCCGTTTCTAACTATCAGGAACAGGCCAAA
1 GGACAAAATGAGGTGTCTACAGCTACCCCTCTTTGGCCGTTTCTAACTATCAAGAACAGGCCAAA
*
609938 AACAAATATACACCATTTTGTCTGCGGCCGCATGTCATGACCTTTGGTGATTAATGCTTCGCCGT
66 AACAAATATACACCATTTTGTCTGCGGCCGCATGTCATAACCTTTGGTGATTAATGCTTCGCCGT
* *
610003 GATGAAGAGTGCATTGGCGACGGTTCCGATGGAAAAATGGGTTTGTAGGGTTTGTCCTCCCTACT
131 GATGAAGAGTGCATTGGCAACGGTTCCGATGGAAAAATGAGTTTGTAGGGTTTGTCCTCCCTACT
610068 AGGTTTTGGAATTTTCTAAGGCTTGACCTCCTTAGATAGGTGTAGATTGGTGTACAATTTGGAAC
196 AGGTTTTGGAATTTTCTAAGGCTTGACCTCCTTAGATAGGTGTAGATTGGTGTACAATTTGGAAC
610133 GGATTTTGGAAGAATATGGTCAGTATTTTGCAATGTGCCACTGTGCAGATTCAAGGCCTGCCACA
261 GGATTTTGGAAGAATATGGTCAGTATTTTGCAATGTGCCACTGTGCAGATTCAAGGCCTGCCACA
610198 CTAAACTTAAAGATGATGAGGATGAAGAGTGATAAAAGGACCAGTACGTTGATTCACGGCCAATG
326 CTAAACTTAAAGATGATGAGGATGAAGAGTGATAAAAGGACCAGTACGTTGATTCACGGCCAATG
610263 ATATTAGGTTTAAAGATGAGAAAAAGGATGTCAATATGCTGATTCAC-GTCAGCAACAGTTAGAC
391 ATATTAGGTTTAAAGATGAGAAAAAGGATGTCAATATGCTGATTCACAGTCAGCAACAGTTAGAC
610327 TGGAAGATCAGAAGAATGCCAATATGCTGATTAAAGGCCAACGGCATTGGGTTTTAAAAATGATG
456 TGGAAGATCAGAAGAATGCCAATATGCTGATTAAAGGCCAACGGCATTGGGTTTTAAAAATGATG
610392 AAGGCGCCAATATGCTGAGTCAAGGCCAGCGATATTGGACTTAAAGACGAAGGTGCCAATGTGTT
521 AAGGCGCCAATATGCTGAGTCAAGGCCAGCGATATTGGACTTAAAGACGAAGGTGCCAATGTGTT
610457 GAGTCAAGGCCAGCGACATTGGACTTAAAGATGAGGTGCCAATATGCTGATTCAAGGCCAACTAT
586 GAGTCAAGGCCAGCGACATTGGACTTAAAGATGAGGTGCCAATATGCTGATTCAAGGCCAACTAT
* * *
610522 ATTGGACTTAATGGTAAGATGCCAATATGCTGATTGAACAGCTATATTTGACTTAAAGGTGAGGT
651 ATTGGACTTAAAGGTAAGGTGCCAATATGCTGATTGAACAGCTATATTGGACTTAAAGGTGAGGT
* *
610587 GCCAAAATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGGGCCAATATGCTGATTCA
716 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCA
*
610652 AGGCAAGTTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGA
781 AGGCCAGTTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGA
* *
610717 CTTAACGGTGATAAAGGTGCCAATATGCTGATACAAGGCTAGCTATATTCGTCTCCACATATGTC
846 CTTAAAGGTGATAAAGGTGCCAATATGCTGATACAAGGCCAGCTATATTCGTCTCCACATATGTC
*
610782 GAATCCTCCACCTACTAGCTAGTCCCTAAATTGTTGAAAATTGGCCC
911 GAATCCTCCACCTACTAGCTAGGCCCTAAATTGTTGAAAATTGGCCC
* *
610829 GGACAAAATGAGGTGTCTACAGCTGCCCCTCTTTGGCCGTTTCTAACTATCAGGAACAGGCCAAA
1 GGACAAAATGAGGTGTCTACAGCTACCCCTCTTTGGCCGTTTCTAACTATCAAGAACAGGCCAAA
*
610894 AACAAATATACACCATTTTGTCTGCGGCCGCATGTCATGACCTTTGGTGATTAATGCTTCGCCGT
66 AACAAATATACACCATTTTGTCTGCGGCCGCATGTCATAACCTTTGGTGATTAATGCTTCGCCGT
* *
610959 GATGAAGAGTGCATTGGCGACGGTTCCGATGGAAAAATGGGTTTGTAGGGTTTGTCCTCCCTACT
131 GATGAAGAGTGCATTGGCAACGGTTCCGATGGAAAAATGAGTTTGTAGGGTTTGTCCTCCCTACT
* *
611024 AGGTTTTGGAATTTTCTAAGGCTTGACCTCCTTAGATAGGTGTAGATTGGTGTAGAGTTTGGAA-
196 AGGTTTTGGAATTTTCTAAGGCTTGACCTCCTTAGATAGGTGTAGATTGGTGTACAATTTGGAAC
* * *
611088 GGATTTTGGAAAAATATGGGCAGTATTTTGCAATGTGCCACTGTGCAGATTCAAGGCCTACCACA
261 GGATTTTGGAAGAATATGGTCAGTATTTTGCAATGTGCCACTGTGCAGATTCAAGGCCTGCCACA
** * *
611153 CTGGACTTAAAGATGATGAGGATGAAGAGTGATAAAAGGACCAATACGTTGATTCACGGCCAACG
326 CTAAACTTAAAGATGATGAGGATGAAGAGTGATAAAAGGACCAGTACGTTGATTCACGGCCAATG
* *
611218 ATATTGGGTTTAAAGATGAGAAAAAGGATGTCAATATGCTGATTCACGGTCAGCAACAGTTAGAC
391 ATATTAGGTTTAAAGATGAGAAAAAGGATGTCAATATGCTGATTCACAGTCAGCAACAGTTAGAC
* * * *
611283 TTGAAGATGAGAAGAATGCCAATGTGCTGATTCAAGGCCAACGGCATTGGGTTTTAAAAATGATG
456 TGGAAGATCAGAAGAATGCCAATATGCTGATTAAAGGCCAACGGCATTGGGTTTTAAAAATGATG
611348 AAGGCGCCAATATGCTGAGTCAAGGCCAGCGATATTGGACTTAAAGACGAAGGTGCCAATGTGTT
521 AAGGCGCCAATATGCTGAGTCAAGGCCAGCGATATTGGACTTAAAGACGAAGGTGCCAATGTGTT
* *
611413 GAGTCAAGGCCAGCGACATTAGACTTAAAGATGAGGTGCCAATATGCTAATTCAAGGCCAACTAT
586 GAGTCAAGGCCAGCGACATTGGACTTAAAGATGAGGTGCCAATATGCTGATTCAAGGCCAACTAT
* *
611478 ATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGA
651 ATTGGACTTAAAGGTAAGGTGCCAATATGCTGATTGAA---CAGCTATATTGGACTTAAAGGTGA
*
611543 GGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAGGTGCCAATATGCTGAT
713 GGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGAT
*
611608 TCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATT
778 TCAAGGCCAGTTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATT
611673 CGTCCCCACA
Statistics
Matches: 2683, Mismatches: 66, Indels: 13
0.97 0.02 0.00
Matches are distributed among these distances:
954 1 0.00
955 608 0.23
956 1254 0.47
957 2 0.00
958 239 0.09
959 382 0.14
960 197 0.07
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.27
Consensus pattern (957 bp):
GGACAAAATGAGGTGTCTACAGCTACCCCTCTTTGGCCGTTTCTAACTATCAAGAACAGGCCAAA
AACAAATATACACCATTTTGTCTGCGGCCGCATGTCATAACCTTTGGTGATTAATGCTTCGCCGT
GATGAAGAGTGCATTGGCAACGGTTCCGATGGAAAAATGAGTTTGTAGGGTTTGTCCTCCCTACT
AGGTTTTGGAATTTTCTAAGGCTTGACCTCCTTAGATAGGTGTAGATTGGTGTACAATTTGGAAC
GGATTTTGGAAGAATATGGTCAGTATTTTGCAATGTGCCACTGTGCAGATTCAAGGCCTGCCACA
CTAAACTTAAAGATGATGAGGATGAAGAGTGATAAAAGGACCAGTACGTTGATTCACGGCCAATG
ATATTAGGTTTAAAGATGAGAAAAAGGATGTCAATATGCTGATTCACAGTCAGCAACAGTTAGAC
TGGAAGATCAGAAGAATGCCAATATGCTGATTAAAGGCCAACGGCATTGGGTTTTAAAAATGATG
AAGGCGCCAATATGCTGAGTCAAGGCCAGCGATATTGGACTTAAAGACGAAGGTGCCAATGTGTT
GAGTCAAGGCCAGCGACATTGGACTTAAAGATGAGGTGCCAATATGCTGATTCAAGGCCAACTAT
ATTGGACTTAAAGGTAAGGTGCCAATATGCTGATTGAACAGCTATATTGGACTTAAAGGTGAGGT
GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCA
AGGCCAGTTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGA
CTTAAAGGTGATAAAGGTGCCAATATGCTGATACAAGGCCAGCTATATTCGTCTCCACATATGTC
GAATCCTCCACCTACTAGCTAGGCCCTAAATTGTTGAAAATTGGCCC
Found at i:610513 original size:48 final size:48
Alignment explanation
Indices: 610388--610765 Score: 438
Period size: 48 Copynumber: 7.8 Consensus size: 48
610378 TTTTAAAAAT
* * *
610388 GATGAAGGCGCCAATATGCTGAGTCAAGGCCAGCGATATTGGACTTAAA
1 GATG-AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
* * * * * *
610437 GACGAAGGTGCCAATGTGTTGAGTCAAGGCCAGCGACATTGGACTTAAA
1 GATG-AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
* *
610486 GATGAGGTGCCAATATGCTGATTCAAGGCCAACTATATTGGACTTAAT
1 GATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
* * * * *
610534 GGTAAGATGCCAATATGCTGATTGAA---CAGCTATATTTGACTTAAA
1 GATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
* *
610579 GGTGAGGTGCCAAAATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
1 GATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
* * * *
610627 GGTGAGGGGCCAATATGCTGATTCAAGGCAAGTTATATTGGACTTAAA
1 GATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
* *
610675 GGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAACGGT
1 GATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAA---A
* * *
610726 GATAAAGGTGCCAATATGCTGATACAAGGCTAGCTATATT
1 GAT-GAGGTGCCAATATGCTGATTCAAGGCCAGCTATATT
610766 CGTCTCCACA
Statistics
Matches: 285, Mismatches: 37, Indels: 11
0.86 0.11 0.03
Matches are distributed among these distances:
45 38 0.13
48 165 0.58
49 47 0.16
51 2 0.01
52 33 0.12
ACGTcount: A:0.31, C:0.16, G:0.26, T:0.26
Consensus pattern (48 bp):
GATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
Found at i:610603 original size:93 final size:95
Alignment explanation
Indices: 610397--610765 Score: 438
Period size: 93 Copynumber: 3.8 Consensus size: 95
610387 TGATGAAGGC
* * * * * *
610397 GCCAATATGCTGAGTCAAGGCCAGCGATATTGGACTTAAAGACG-AAGGTGCCAATGTGTTGAGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAATG--GTAAGGTGCCAATATGCTGATT
* * * *
610461 CAAGGCCAGCGACATTGGACTTAAAGATGAGGT
64 CAA-GCAAGCTATATTGGACTTAAAGGTGAGGT
* * *
610494 GCCAATATGCTGATTCAAGGCCAACTATATTGGACTTAATGGTAAGATGCCAATATGCTGATTGA
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAATGGTAAGGTGCCAATATGCTGATTCA
*
610559 A-C-AGCTATATTTGACTTAAAGGTGAGGT
66 AGCAAGCTATATTGGACTTAAAGGTGAGGT
* * * *
610587 GCCAAAATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGGGCCAATATGCTGATTCA
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAATGGTAAGGTGCCAATATGCTGATTCA
*
610652 AGGCAAGTTATATTGGACTTAAAGGTGAGGT
66 A-GCAAGCTATATTGGACTTAAAGGTGAGGT
*
610683 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAACGGTGATAAAGGTGCCAATATGCTGA
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAA---TGGT-AAGGTGCCAATATGCTGA
* *
610748 TACAAGGCTAGCTATATT
62 TTCAA-GCAAGCTATATT
610766 CGTCTCCACA
Statistics
Matches: 234, Mismatches: 30, Indels: 13
0.84 0.11 0.05
Matches are distributed among these distances:
93 81 0.35
94 1 0.00
95 2 0.01
96 80 0.34
97 37 0.16
99 2 0.01
100 31 0.13
ACGTcount: A:0.31, C:0.16, G:0.26, T:0.26
Consensus pattern (95 bp):
GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAATGGTAAGGTGCCAATATGCTGATTCA
AGCAAGCTATATTGGACTTAAAGGTGAGGT
Found at i:610689 original size:189 final size:192
Alignment explanation
Indices: 610397--610748 Score: 512
Period size: 189 Copynumber: 1.8 Consensus size: 192
610387 TGATGAAGGC
* * * *
610397 GCCAATATGCTGAGTCAAGGCCAGCGATATTGGACTTAAAGACGAAGGTGCCAATGTGTTGAGTC
1 GCCAAAATGCTGAGTCAAGGCCAGCGATATTGGACTTAAAGACGAAGGGGCCAATATGCTGAGTC
*
610462 AAGGCCAGCGACATTGGACTTAAAGATGAGGTGCCAATATGCTGATTCAAGGCCAACTATATTGG
66 AAGGCAAGCGACATTGGACTTAAAGATGAGGTGCCAATATGCTGATTCAAGGCCAACTATATTGG
*
610527 ACTTAA-TGGT-AAGATGCCAATATGCTGATTGAACAGCTATATTTGACTTAAAGGTGAGGT
131 ACTTAAGTGATAAAGATGCCAATATGCTGATTGAACAGCTATATTTGACTTAAAGGTGAGGT
* * ** *
610587 GCCAAAATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTG-AGGGGCCAATATGCTGATTC
1 GCCAAAATGCTGAGTCAAGGCCAGCGATATTGGACTTAAAGACGAAGGGGCCAATATGCTGAGTC
** * * *
610651 AAGGCAAGTTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGG
66 AAGGCAAGCGACATTGGACTTAAAGATGAGGTGCCAATATGCTGATTCAAGGCCAACTATATTGG
*
610716 ACTTAACGGTGATAAAGGTGCCAATATGCTGAT
131 ACTTAA--GTGATAAAGATGCCAATATGCTGAT
610749 ACAAGGCTAG
Statistics
Matches: 141, Mismatches: 17, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
189 81 0.57
190 39 0.28
192 3 0.02
193 18 0.13
ACGTcount: A:0.31, C:0.16, G:0.26, T:0.26
Consensus pattern (192 bp):
GCCAAAATGCTGAGTCAAGGCCAGCGATATTGGACTTAAAGACGAAGGGGCCAATATGCTGAGTC
AAGGCAAGCGACATTGGACTTAAAGATGAGGTGCCAATATGCTGATTCAAGGCCAACTATATTGG
ACTTAAGTGATAAAGATGCCAATATGCTGATTGAACAGCTATATTTGACTTAAAGGTGAGGT
Found at i:610696 original size:141 final size:143
Alignment explanation
Indices: 610397--610765 Score: 456
Period size: 141 Copynumber: 2.5 Consensus size: 143
610387 TGATGAAGGC
* * ** * * *
610397 GCCAATATGCTGAGTCAAGGCCAGCGATATTGGACTTAAAGACGAAGGTGCCAATGTGTTGAGTC
1 GCCAATATGCTGATTCAA-G-CAGCTATATTGGACTTAAAGGTGAAGGTGCCAATATGCTGATTC
* * *
610462 AAGGCCAGCGACATTGGACTTAAAGATGAGGTGCCAATATGCTGATTCAAGGCCAACTATATTGG
64 AAGGCCAGCTATATTGGACTTAAAGATGAGGGGCCAATATGCTGATTCAAGGCCAACTATATTGG
*
610527 ACTTAATGGTAAGAT
129 ACTTAAAGGTAAGAT
* * *
610542 GCCAATATGCTGATTGAA-CAGCTATATTTGACTTAAAGGTG-AGGTGCCAAAATGCTGATTCAA
1 GCCAATATGCTGATTCAAGCAGCTATATTGGACTTAAAGGTGAAGGTGCCAATATGCTGATTCAA
* *
610605 GGCCAGCTATATTGGACTTAAAGGTGAGGGGCCAATATGCTGATTCAAGG-CAAGTTATATTGGA
66 GGCCAGCTATATTGGACTTAAAGATGAGGGGCCAATATGCTGATTCAAGGCCAA-CTATATTGGA
* *
610669 CTTAAAGGTGAGGT
130 CTTAAAGGTAAGAT
*
610683 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAACGGTGATAAAGGTGCCAATATGCTGA
1 GCCAATATGCTGATTCAA-G-CAGCTATATTGGACTTAAAGGTG---AAGGTGCCAATATGCTGA
* *
610748 TACAAGGCTAGCTATATT
61 TTCAAGGCCAGCTATATT
610766 CGTCTCCACA
Statistics
Matches: 192, Mismatches: 24, Indels: 13
0.84 0.10 0.06
Matches are distributed among these distances:
140 3 0.02
141 101 0.53
142 19 0.10
144 21 0.11
145 16 0.08
148 32 0.17
ACGTcount: A:0.31, C:0.16, G:0.26, T:0.26
Consensus pattern (143 bp):
GCCAATATGCTGATTCAAGCAGCTATATTGGACTTAAAGGTGAAGGTGCCAATATGCTGATTCAA
GGCCAGCTATATTGGACTTAAAGATGAGGGGCCAATATGCTGATTCAAGGCCAACTATATTGGAC
TTAAAGGTAAGAT
Found at i:611469 original size:48 final size:48
Alignment explanation
Indices: 611344--611672 Score: 505
Period size: 48 Copynumber: 6.8 Consensus size: 48
611334 TTTTAAAAAT
* * *
611344 GATGAAGGCGCCAATATGCTGAGTCAAGGCCAGCGATATTGGACTTAAA
1 GATG-AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
* * * * * * *
611393 GACGAAGGTGCCAATGTGTTGAGTCAAGGCCAGCGACATTAGACTTAAA
1 GATG-AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
* *
611442 GATGAGGTGCCAATATGCTAATTCAAGGCCAACTATATTGGACTTAAA
1 GATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
*
611490 GGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
1 GATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
*
611538 GGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
1 GATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
611586 GATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
1 GATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
*
611634 GGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATT
1 GATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATT
611673 CGTCCCCACA
Statistics
Matches: 260, Mismatches: 20, Indels: 1
0.93 0.07 0.00
Matches are distributed among these distances:
48 214 0.82
49 46 0.18
ACGTcount: A:0.31, C:0.17, G:0.26, T:0.25
Consensus pattern (48 bp):
GATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
Found at i:612379 original size:48 final size:48
Alignment explanation
Indices: 612253--612630 Score: 478
Period size: 48 Copynumber: 7.8 Consensus size: 48
612243 TTTTAAAAAT
* *
612253 GATGAAGGTGCCAATATGCTGAGTCAAGGCCAGCAATATTGGACTTAAA
1 GATG-AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
* * * *
612302 GACGAAGGTGCCAATGTGTTGAGTT-AAGGCCAG-TGACATTGGACTTAAA
1 GATG-AGGTGCCAATATGCTGA-TTCAAGGCCAGCT-ATATTGGACTTAAA
* * *
612351 AATGAGGTGCCAATATGCTGATTCAAGGCCAACTATATTTGACTTAAA
1 GATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
* * *
612399 GGTGAGATGCCAATATGCTGATTCAA---CAGCTATATTTGACTTAAA
1 GATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
* *
612444 GGTGAGGTGCCAAAATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
1 GATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
* * *
612492 GGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGGCTTAAT
1 GATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
*
612540 GGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
1 GATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
*
612588 GGTGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATT
1 ---GAT-GAGGTGCCAATATGCTGATTCAAGGCCAGCTATATT
612631 CGTCCCCACA
Statistics
Matches: 291, Mismatches: 27, Indels: 19
0.86 0.08 0.06
Matches are distributed among these distances:
45 42 0.14
47 2 0.01
48 166 0.57
49 43 0.15
50 1 0.00
51 2 0.01
52 35 0.12
ACGTcount: A:0.31, C:0.16, G:0.26, T:0.27
Consensus pattern (48 bp):
GATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
Found at i:612397 original size:909 final size:907
Alignment explanation
Indices: 610440--612578 Score: 3585
Period size: 907 Copynumber: 2.4 Consensus size: 907
610430 ACTTAAAGAC
* * * * * *
610440 GAAGGTGCCAATGTGTTGAGTCAAGGCCAGCGACATTGGACTTAAAGATG-AGGTGCCAATATGC
1 GAAGGTGCCAATATGCTGAGTCAAGGCCAGCGATATTGGACTTAAAGACGAAGGTGCCAATGTGT
* * * * * * * *
610504 TGA-TTCAAGGCCAACT-ATATTGGACTTAATGGTAAGATGCCAATATGCTGATTGAA---CAGC
66 TGAGTT-AAGGCC-AGTGACATTGGACTTAAAGATGAGGTGCCAATATGCTGATTCAAGGCCAAC
*
610564 TATATTTGACTTAAAGGTGAGGTGCCAAAATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGG
129 TATATTTGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGG
* * *
610629 TGAGGGGCCAATATGCTGATTCAAGGCAAGTTATATTGGACTTAAAGGTGAGGTGCCAATATGCT
194 TGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCT
* * *
610694 GATTCAAGGCCAGCTATATTGGACTTAACGGTGATAAAGGTGCCAATATGCTGATACAAGGCTAG
259 GATTCAAGGCCAGCTATATTGGACTTAAAGGTG----AGGTGCCAATATGCTGATTCAAGGCCAG
* *
610759 CTATATTCGTCTCCACATATGTCGAATCCTCCACCTACTAGCTAGTCCCTAAATTGTTGAAAATT
320 CTATATTCGTCCCCACATATGTCGAATCCTCCACCTACTAGCTAGGCCCTAAATTGTTGAAAATT
* * *
610824 GGCCCGGACAAAATGAGGTGTCTACAGCTGCCCCTCTTTGGCCGTTTCTAACTATCAGGAACAGG
385 GGCCCGGACAAAATGAGGTGTCTACAGCTACCCCTCTTTGGCCATTTCTAACTATCAAGAACAGG
*
610889 CCAAAAACAAATATACACCATTTTGTCTGCGGCCGCATGTCATGACCTTTGGTGATTAATGCTTC
450 CCAAAAACAAATAGACACCATTTTGTCTGCGGCCGCATGTCATGACCTTTGGTGATTAATGCTTC
*
610954 GCCGTGATGAAGAGTGCATTGGCGACGGTTCCGATGGAAAAATGGGTTTGTAGGGTTTGTCCTCC
515 GCCGTGATGAAGAGTGCATTGGCGACGGTTCCGATGGAAAAATGAGTTTGTAGGGTTTGTCCTCC
* * *
611019 CTACTAGGTTTTGGAATTTTCTAAGGCTTGACCTCCTTAGATAGGTGTAGATTGGTGTAGAGTTT
580 CTACTAGGTTTTGGAATTTTCTAAGGCTTGACCTCCTAAGATAGGTGTAGATTGGTGTACAATTT
*
611084 GGAAGGATTTTGGAAAAATATGGGCAGTATTTTGCAATGTGCCACTGTGCAGATTCAAGGCCTAC
645 GGAAGGATTTTGGAAAAATATGGGCAGTATTTTGCAATGTGCCACTATGCAGATTCAAGGCCTAC
*
611149 CACACTGGACTTAAAGATGATGAGGATGAAGAGTGATAAAAGGACCAATACGTTGATTCACGGCC
710 CACACTAGACTTAAAGATGATGAGGATGAAGAGTGATAAAAGGACCAATACGTTGATTCACGGCC
* *
611214 AACGATATTGGGTTTAAAGATGAGAAAAAGGATGTCAATATGCTGATTCACGGTCAGCAACAGTT
775 AACGATATTAGGTTTAAAGATGAGAAAAAGGATGTCAATATGCTGATTCACAGTCAGCAACAGTT
*
611279 AGACTTGAAGATGAGAAGAATGCCAATGTGCTGATTCAAGGCCAACGGCATTGGGTTTTAAAAAT
840 AGACTGGAAGATGAGAAGAATGCCAATGTGCTGATTCAAGGCCAACGGCATTGGGTTTTAAAAAT
611344 GAT
905 GAT
*
611347 GAAGGCGCCAATATGCTGAGTCAAGGCCAGCGATATTGGACTTAAAGACGAAGGTGCCAATGTGT
1 GAAGGTGCCAATATGCTGAGTCAAGGCCAGCGATATTGGACTTAAAGACGAAGGTGCCAATGTGT
* * * *
611412 TGAGTCAAGGCCAGCGACATTAGACTTAAAGATGAGGTGCCAATATGCTAATTCAAGGCCAACTA
66 TGAGTTAAGGCCAGTGACATTGGACTTAAAGATGAGGTGCCAATATGCTGATTCAAGGCCAACTA
*
611477 TATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTG
131 TATTTGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTG
*
611542 AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAGGTGCCAATATGCTGA
196 AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGA
611607 TTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATAT
261 TTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATAT
611672 TCGTCCCCACATATGTCGAATCCTCCACCTACTAGCTAGGCCCTAAATTGTTGAAAATTGGCCCG
326 TCGTCCCCACATATGTCGAATCCTCCACCTACTAGCTAGGCCCTAAATTGTTGAAAATTGGCCCG
* * * *
611737 GACAAAATGAGGTGTCTACAGCTACCCCTCTTTGGCCATTTCTGAGTATCAAGAATAGGCCAAAG
391 GACAAAATGAGGTGTCTACAGCTACCCCTCTTTGGCCATTTCTAACTATCAAGAACAGGCCAAAA
*
611802 ACAAATAGACACCATTTTGTCTGCGGCCGCATGTCATGACCTTTGGTGGTTAATGCTTCGCCGTG
456 ACAAATAGACACCATTTTGTCTGCGGCCGCATGTCATGACCTTTGGTGATTAATGCTTCGCCGTG
611867 ATGAAGAGTGCATTGGCGACGGTTCCGATGGAAAAATGAGTTTGTAGGGTTTGTCCTCCCTACTA
521 ATGAAGAGTGCATTGGCGACGGTTCCGATGGAAAAATGAGTTTGTAGGGTTTGTCCTCCCTACTA
611932 GGTTTTGGAATTTTCTAAGGCTTGACCTCCTAAGATAGGTGTAGATTGGTGTACAATTTGGAACG
586 GGTTTTGGAATTTTCTAAGGCTTGACCTCCTAAGATAGGTGTAGATTGGTGTACAATTTGGAA-G
* * *
611997 GATTTTGGAAGAATATGGTCAGTATTTTGCAATGTGCCACTTATGCAGATTCAAGGCCTGCCACA
650 GATTTTGGAAAAATATGGGCAGTATTTTGCAATGTGCCAC-TATGCAGATTCAAGGCCTACCACA
* *
612062 CTAGACTTAAAGATGATGAGGATGAAGAGTGATAAAAGGACCAGTACGTTGATTCACGGCCAATG
714 CTAGACTTAAAGATGATGAGGATGAAGAGTGATAAAAGGACCAATACGTTGATTCACGGCCAACG
612127 ATATTAGGTTTAAAGATGAGAAAAAGGATGTCAATATGCTGATTCACAGTCAGCAACAGTTAGAC
779 ATATTAGGTTTAAAGATGAGAAAAAGGATGTCAATATGCTGATTCACAGTCAGCAACAGTTAGAC
* *
612192 TGGAAGTTGAGAAGAATGCCAATGTGCTGATTCAAGGCCAACGGCATTTGGTTTTAAAAATGAT
844 TGGAAGATGAGAAGAATGCCAATGTGCTGATTCAAGGCCAACGGCATTGGGTTTTAAAAATGAT
*
612256 GAAGGTGCCAATATGCTGAGTCAAGGCCAGCAATATTGGACTTAAAGACGAAGGTGCCAATGTGT
1 GAAGGTGCCAATATGCTGAGTCAAGGCCAGCGATATTGGACTTAAAGACGAAGGTGCCAATGTGT
*
612321 TGAGTTAAGGCCAGTGACATTGGACTTAAAAATGAGGTGCCAATATGCTGATTCAAGGCCAACTA
66 TGAGTTAAGGCCAGTGACATTGGACTTAAAGATGAGGTGCCAATATGCTGATTCAAGGCCAACTA
* *
612386 TATTTGACTTAAAGGTGAGATGCCAATATGCTGATTCAA---CAGCTATATTTGACTTAAAGGTG
131 TATTTGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTG
*
612448 AGGTGCCAAAATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGA
196 AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGA
* *
612513 TTCAAGGCCAGCTATATTGGGCTTAATGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATAT
261 TTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATAT
612578 T
326 T
612579 GGACTTAAAG
Statistics
Matches: 1155, Mismatches: 69, Indels: 17
0.93 0.06 0.01
Matches are distributed among these distances:
906 149 0.13
907 386 0.33
908 92 0.08
909 369 0.32
911 159 0.14
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.27
Consensus pattern (907 bp):
GAAGGTGCCAATATGCTGAGTCAAGGCCAGCGATATTGGACTTAAAGACGAAGGTGCCAATGTGT
TGAGTTAAGGCCAGTGACATTGGACTTAAAGATGAGGTGCCAATATGCTGATTCAAGGCCAACTA
TATTTGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTG
AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGA
TTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATAT
TCGTCCCCACATATGTCGAATCCTCCACCTACTAGCTAGGCCCTAAATTGTTGAAAATTGGCCCG
GACAAAATGAGGTGTCTACAGCTACCCCTCTTTGGCCATTTCTAACTATCAAGAACAGGCCAAAA
ACAAATAGACACCATTTTGTCTGCGGCCGCATGTCATGACCTTTGGTGATTAATGCTTCGCCGTG
ATGAAGAGTGCATTGGCGACGGTTCCGATGGAAAAATGAGTTTGTAGGGTTTGTCCTCCCTACTA
GGTTTTGGAATTTTCTAAGGCTTGACCTCCTAAGATAGGTGTAGATTGGTGTACAATTTGGAAGG
ATTTTGGAAAAATATGGGCAGTATTTTGCAATGTGCCACTATGCAGATTCAAGGCCTACCACACT
AGACTTAAAGATGATGAGGATGAAGAGTGATAAAAGGACCAATACGTTGATTCACGGCCAACGAT
ATTAGGTTTAAAGATGAGAAAAAGGATGTCAATATGCTGATTCACAGTCAGCAACAGTTAGACTG
GAAGATGAGAAGAATGCCAATGTGCTGATTCAAGGCCAACGGCATTGGGTTTTAAAAATGAT
Found at i:612468 original size:93 final size:94
Alignment explanation
Indices: 612258--612630 Score: 464
Period size: 93 Copynumber: 3.9 Consensus size: 94
612248 AAAATGATGA
* * ** * *
612258 AGGTGCCAATATGCTGAGTCAAGGCCAGCAATATTGGACTTAAAGACGAAGGTGCCAATGTGTTG
1 AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTG-AGGTGCCAATATGCTG
* **
612323 AGTT-AAGGCCAG-TGACATTGGACTTAAAAATG
65 A-TTCAA-G-CAGCT-ATATTGGACTTAAAGGTG
* * *
612355 AGGTGCCAATATGCTGATTCAAGGCCAACTATATTTGACTTAAAGGTGAGATGCCAATATGCTGA
1 AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGA
*
612420 TTCAA-CAGCTATATTTGACTTAAAGGTG
66 TTCAAGCAGCTATATTGGACTTAAAGGTG
*
612448 AGGTGCCAAAATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGA
1 AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGA
* *
612513 TTCAAGGCCAGCTATATTGGGCTTAATGGTG
66 TTCAA-G-CAGCTATATTGGACTTAAAGGTG
612544 AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGATAAAGGTGCCAATATG
1 AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTG----AGGTGCCAATATG
612609 CTGATTCAAGGCCAGCTATATT
62 CTGATTCAA-G-CAGCTATATT
612631 CGTCCCCACA
Statistics
Matches: 246, Mismatches: 21, Indels: 15
0.87 0.07 0.05
Matches are distributed among these distances:
93 83 0.34
94 1 0.00
95 2 0.01
96 83 0.34
97 42 0.17
100 35 0.14
ACGTcount: A:0.31, C:0.16, G:0.25, T:0.27
Consensus pattern (94 bp):
AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGA
TTCAAGCAGCTATATTGGACTTAAAGGTG
Found at i:612561 original size:141 final size:143
Alignment explanation
Indices: 612258--612630 Score: 493
Period size: 141 Copynumber: 2.6 Consensus size: 143
612248 AAAATGATGA
* * ** * *
612258 AGGTGCCAATATGCTGAGTCAAGGCCAGCAATATTGGACTTAAAGACGAAGGTGCCAATGTGTTG
1 AGGTGCCAATATGCTGATTCAA-G-CAGCTATATTGGACTTAAAGGTGAAGGTGCCAATATGCTG
*
612323 AGTT-AAGGCCAG-TGACATTGGACTTAAAAATGAGGTGCCAATATGCTGATTCAAGGCCAACTA
64 A-TTCAAGGCCAGCT-ATATTGGACTTAAAAATGAGGTGCCAATATGCTGATTCAAGGCCAACTA
*
612386 TATTTGACTTAAAGGTG
127 TATTGGACTTAAAGGTG
* * *
612403 AGATGCCAATATGCTGATTCAA-CAGCTATATTTGACTTAAAGGTG-AGGTGCCAAAATGCTGAT
1 AGGTGCCAATATGCTGATTCAAGCAGCTATATTGGACTTAAAGGTGAAGGTGCCAATATGCTGAT
** *
612466 TCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATT
66 TCAAGGCCAGCTATATTGGACTTAAAAATGAGGTGCCAATATGCTGATTCAAGGCCAACTATATT
* *
612531 GGGCTTAATGGTG
131 GGACTTAAAGGTG
612544 AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGATAAAGGTGCCAATATG
1 AGGTGCCAATATGCTGATTCAA-G-CAGCTATATTGGACTTAAAGGTG---AAGGTGCCAATATG
612609 CTGATTCAAGGCCAGCTATATT
61 CTGATTCAAGGCCAGCTATATT
612631 CGTCCCCACA
Statistics
Matches: 200, Mismatches: 19, Indels: 15
0.85 0.08 0.06
Matches are distributed among these distances:
140 2 0.01
141 102 0.51
142 20 0.10
144 22 0.11
145 20 0.10
148 34 0.17
ACGTcount: A:0.31, C:0.16, G:0.25, T:0.27
Consensus pattern (143 bp):
AGGTGCCAATATGCTGATTCAAGCAGCTATATTGGACTTAAAGGTGAAGGTGCCAATATGCTGAT
TCAAGGCCAGCTATATTGGACTTAAAAATGAGGTGCCAATATGCTGATTCAAGGCCAACTATATT
GGACTTAAAGGTG
Found at i:612565 original size:189 final size:191
Alignment explanation
Indices: 612258--612617 Score: 512
Period size: 189 Copynumber: 1.9 Consensus size: 191
612248 AAAATGATGA
* * *
612258 AGGTGCCAATATGCTGAGTCAAGGCCAGCAATATTGGACTTAAAGACGAAGGTGCCAATGTGTTG
1 AGGTGCCAAAATGCTGAGTCAAGGCCAGCAATATTGGACTTAAAGACGAAGGTGCCAATATGCTG
612323 AGTTAAGGCCAGTGACATTGGACTTAAAAATGAGGTGCCAATATGCTGATTCAAGGCCAACTATA
66 AGTTAAGGCCAGTGACATTGGACTTAAAAATGAGGTGCCAATATGCTGATTCAAGGCCAACTATA
*
612388 TTTGACTTAAAGGTG-AGATGCCAATATGCTGATTCAACAGCTATATTTGACTTAAAGGTG
131 TTGGACTTAAAGGTGAAGATGCCAATATGCTGATTCAACAGCTATATTTGACTTAAAGGTG
* * **
612448 AGGTGCCAAAATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTG-AGGTGCCAATATGCTG
1 AGGTGCCAAAATGCTGAGTCAAGGCCAGCAATATTGGACTTAAAGACGAAGGTGCCAATATGCTG
* * *** *
612512 A-TTCAAGGCCAGCT-ATATTGGGCTTAATGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTA
66 AGTT-AAGGCCAG-TGACATTGGACTTAAAAATGAGGTGCCAATATGCTGATTCAAGGCCAACTA
*
612575 TATTGGACTTAAAGGTGATAAAGGTGCCAATATGCTGATTCAA
129 TATTGGACTTAAAGGTG---AAGATGCCAATATGCTGATTCAA
612618 GGCCAGCTAT
Statistics
Matches: 149, Mismatches: 15, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
188 2 0.01
189 82 0.55
190 44 0.30
193 21 0.14
ACGTcount: A:0.31, C:0.16, G:0.26, T:0.27
Consensus pattern (191 bp):
AGGTGCCAAAATGCTGAGTCAAGGCCAGCAATATTGGACTTAAAGACGAAGGTGCCAATATGCTG
AGTTAAGGCCAGTGACATTGGACTTAAAAATGAGGTGCCAATATGCTGATTCAAGGCCAACTATA
TTGGACTTAAAGGTGAAGATGCCAATATGCTGATTCAACAGCTATATTTGACTTAAAGGTG
Found at i:613316 original size:48 final size:47
Alignment explanation
Indices: 613213--613336 Score: 133
Period size: 48 Copynumber: 2.6 Consensus size: 47
613203 TAAAAATGAT
* * *
613213 GAAGGCGCCAATATGCTGAGTCAAGGCCAGCGATATTGGACTTAAAGAC
1 GAAGGTGCCAATAT--TGAGTCAAGGCCAGCGACATTGGACTAAAAGAC
* * **
613262 GAAGGTGCCATGTGTTGAGTCAAGGCCAGCGACATTTGGACTAAAAGGT
1 GAAGGTGCCA-ATATTGAGTCAAGGCCAGCGACA-TTGGACTAAAAGAC
*
613311 G-AGGTGCCAATATTGATTCAAGGCCA
1 GAAGGTGCCAATATTGAGTCAAGGCCA
613337 CTATATCACT
Statistics
Matches: 63, Mismatches: 10, Indels: 6
0.80 0.13 0.08
Matches are distributed among these distances:
47 14 0.22
48 26 0.41
49 21 0.33
50 2 0.03
ACGTcount: A:0.31, C:0.19, G:0.30, T:0.21
Consensus pattern (47 bp):
GAAGGTGCCAATATTGAGTCAAGGCCAGCGACATTGGACTAAAAGAC
Found at i:613497 original size:54 final size:53
Alignment explanation
Indices: 613376--613516 Score: 214
Period size: 54 Copynumber: 2.6 Consensus size: 53
613366 ACTTAAAGGG
*
613376 AGGTGCCAATATGCTGATTCAAGGCCAGCTAT-TTGGACTTCATTCAAGGTGAA
1 AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGAC-TCATTAAAGGTGAA
* *
613429 TGGTGCCAAAATGCTGATTCAAGGCCAGCTATATTGGAC-CATTAAAGGTGATAA
1 AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTCATTAAAGGTG--AA
613483 AGGTGCCAATATGCTGATTCAAGGCCAGCTATAT
1 AGGTGCCAATATGCTGATTCAAGGCCAGCTATAT
613517 CGTCCCCAGC
Statistics
Matches: 80, Mismatches: 5, Indels: 5
0.89 0.06 0.06
Matches are distributed among these distances:
52 10 0.12
53 30 0.38
54 40 0.50
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.27
Consensus pattern (53 bp):
AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTCATTAAAGGTGAA
Found at i:614226 original size:97 final size:96
Alignment explanation
Indices: 614095--614336 Score: 270
Period size: 97 Copynumber: 2.4 Consensus size: 96
614085 TTGGGTTTTA
* *
614095 AAAGTGATGAAGGCGCCAATATGCTGAGTCAAGGCCAGTGATATTGGACTTAAAGACGAAGGTGC
1 AAAG-GATG-AGGTGCCAATATGCTGATTCAAGGCCAGT-ATATTGGACTTAAAGACG-AGGTGC
* * *
614160 CAATGTGTTGAGTCAGGGCCAGCGACATTAGACTT
62 CAATATGCTGAGTCAAGGCCAGCGACATTAGACTT
* **
614195 AAA-GATGAGGTGCCAATATGCTGATTCAAGGCCAACTATATTGGACTTAAAGGTGAGGTGCCAA
1 AAAGGATGAGGTGCCAATATGCTGATTCAAGGCC-AGTATATTGGACTTAAAGACGAGGTGCCAA
* * * *
614259 TATGCTGATTCAAGGCCAGCTATATTGGACTT
65 TATGCTGAGTCAAGGCCAGCGACATTAGACTT
* *
614291 AAAGGTGATAAAGGTTCCAATATGCTGATTCAAGGCCAGCTATATT
1 AAA-G-GAT-GAGGTGCCAATATGCTGATTCAAGGCCAG-TATATT
614337 CGTCCCCACA
Statistics
Matches: 121, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
96 37 0.31
97 40 0.33
98 6 0.05
99 4 0.03
100 34 0.28
ACGTcount: A:0.32, C:0.17, G:0.26, T:0.25
Consensus pattern (96 bp):
AAAGGATGAGGTGCCAATATGCTGATTCAAGGCCAGTATATTGGACTTAAAGACGAGGTGCCAAT
ATGCTGAGTCAAGGCCAGCGACATTAGACTT
Found at i:614228 original size:48 final size:48
Alignment explanation
Indices: 614005--614330 Score: 256
Period size: 48 Copynumber: 6.5 Consensus size: 48
613995 AAAAGGATGT
* * * * * *
614005 CAATATGCTGATTCACGGTCAGCAACAGTTAGACTTGATGATGAGAAGAATGC
1 CAATATGCTGATTCAAGGCCAGCGACA-TTGGACTTAAAGATGAG--G--TGC
* * * ** *
614058 CAATGTGCTGATTCAAGGCCAACGGCATTGGGTTTTAAAAGTGATGAAGGCGC
1 CAATATGCTGATTCAAGGCCAGCGACATT-GGACTT-AAA--GATG-AGGTGC
* * * *
614111 CAATATGCTGAGTCAAGGCCAGTGATATTGGACTTAAAGACGAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATG-AGGTGC
* * * * *
614160 CAATGTGTTGAGTCAGGGCCAGCGACATTAGACTTAAAGATGAGGTGC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAGGTGC
* * * *
614208 CAATATGCTGATTCAAGGCCAACTATATTGGACTTAAAGGTGAGGTGC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAGGTGC
* * * *
614256 CAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGATAAAGGTTC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAA---GAT-GAGGTGC
614308 CAATATGCTGATTCAAGGCCAGC
1 CAATATGCTGATTCAAGGCCAGC
614331 TATATTCGTC
Statistics
Matches: 222, Mismatches: 42, Indels: 19
0.78 0.15 0.07
Matches are distributed among these distances:
48 82 0.37
49 44 0.20
51 5 0.02
52 34 0.15
53 49 0.22
54 1 0.00
55 1 0.00
56 4 0.02
57 2 0.01
ACGTcount: A:0.31, C:0.17, G:0.27, T:0.25
Consensus pattern (48 bp):
CAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAGGTGC
Found at i:615058 original size:48 final size:48
Alignment explanation
Indices: 614916--615200 Score: 347
Period size: 48 Copynumber: 5.8 Consensus size: 48
614906 TTTTAAAAAT
* * *
614916 GATGAAGGCGCCAATATGCTGAGTCAAGGCCAGCGATATTGGACTTAAA
1 GATG-AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
* * * * * * *
614965 GACGAAGGTGCCAATGT-CTTGAGTCAGGGCCAGCGACATTAGACTTAAA
1 GATG-AGGTGCCAATATGC-TGATTCAAGGCCAGCTATATTGGACTTAAA
* * *
615014 GATGAGATGCCAATATGCTAATTCAAGGCCAACTATATTGGACTTAAA
1 GATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
*
615062 GGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
1 GATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
*
615110 GGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
1 GATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
* *
615158 GGTGATAAAGGTGCCAATATGGTGATTCAAGGCCAGCTATATT
1 ---GAT-GAGGTGCCAATATGCTGATTCAAGGCCAGCTATATT
615201 CGTCCCCACA
Statistics
Matches: 207, Mismatches: 23, Indels: 9
0.87 0.10 0.04
Matches are distributed among these distances:
48 126 0.61
49 45 0.22
51 2 0.01
52 34 0.16
ACGTcount: A:0.32, C:0.17, G:0.26, T:0.25
Consensus pattern (48 bp):
GATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
Found at i:615809 original size:865 final size:864
Alignment explanation
Indices: 614119--617843 Score: 3692
Period size: 865 Copynumber: 4.3 Consensus size: 864
614109 GCCAATATGC
* * * * * * * * * *
614119 TGAGTCAAGGCCAGTGATATTGGACTTAAAGACGAAGGTGCCAATGTGTTGAGTCAGGGCCAGCG
1 TGAGTCAAGGCCAGCGACATTGGACTTAAAGATG-AGGTGCCAATATGCTAATTCAAGGCCAACT
* * * *
614184 ACATTAGACTTAAAGATGAGGTGCCAATATGCTGATTCAAGGCCAACTATATTGGACTTAAAGGT
65 ATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGT
*
614249 GAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGATAAAGGTTCCAATAT
130 GAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGATAAAGGTGCCAATAT
* *
614314 GCTGATTCAAGGCCAGCTATATTCGTCCCCACATATGTCGAATCCTCTACCTACTAGCTAGGCCC
195 GCTGATTCAAGGCCAGCTATATTCGTCCCCACATATGTTGAATCCTCCACCTACTAGCTAGGCCC
* * * *
614379 TAAATTGTTAAAAATTGGCTCAGACAAAATGAGGTGTCTACAGTTGCCCCTCTTTGGCCGTTTCT
260 TAAATTGTTGAAAATTGGCCCAGACAAAATGAGGTGTCTACAGCTACCCCTCTTTGGCCGTTTCT
* *
614444 GAGTATCAGGAACATGCCAAAGACAAATAGACACCATTTTGTCTGCGGCCGCATGTCATGACCTT
325 GAGTATCAAGAACAGGCCAAAGACAAATAGACACCATTTTGTCTGCGGCCGCATGTCATGACCTT
614509 TGGTGATTTATGCTTCGCCGTGATGAAGAGTGCATTGGCGACGGTTCCGATGGAAAAATGAGTTT
390 TGGTGATTTATGCTTCGCCGTGATGAAGAGTGCATTGGCGACGGTTCCGATGGAAAAATGAGTTT
** * *
614574 GTAGGGTTTAACCTCCCTTCTAGGTTTTGGAATTTTCTAAGGCTTGACCTCTTTAGATAGGTGTA
455 GTAGGGTTTGTCCTCCCTACTAGGTTTTGGAATTTTCTAAGGCTTGACCTCCTTAGATAGGTGTA
* * * *
614639 GATTGGTGTAGAGTTTGGAATGGATTTTGGAAGAATATGGTCAGTATTTTGCAATGTGCCACTAC
520 GATTGGTGTAGAGTTTGGAACGGATTGTAGAAGAATATGGTCAGTATTTTGCAATGTGCCACTAT
* * * *
614704 GCAGATTCAAGGCCTGCCACAATGGACTTAAAGATGATGAGGATAAAGAGTGATAAAGGGACCAG
585 GCAGATTCAAGGCCTACCACACTGGACTTAAAGATGATGAGGATGAAGAGTGATAAAAGGACCAG
*
614769 TACGTTGATTCACGGCCAACGATATTGGGTTTAAAGATGAGAAAAAGGATGTCAATATGCTAATT
650 TACGTTGATTCACGGCCAACGATATTGGGTTTAAAGATGAGAAAAAGGATGTCAATATGCTGATT
* *
614834 CACGGTCAGCAATAGTTAGACTGGAAGATGAGAAGAATGCCAATGTGCTGATTCAAGGCCAACGG
715 CACGGTCAGCAACAGTTAGACTTGAAGATGAGAAGAATGCCAATGTGCTGATTCAAGGCCAACGG
614899 CATTGGGTTTTAAAAATGATGAAGGCGCCAATATGCTGAGTCAAGGCCAGCGATATTGGACTTAA
780 CATTGGGTTTTAAAAATGATGAAGGCGCCAATATGCTGAGTCAAGGCCAGCGATATTGGACTTAA
614964 AGACGAAGGTGCCAATGTCT
845 AGACGAAGGTGCCAATGTCT
* * *
614984 TGAGTCAGGGCCAGCGACATTAGACTTAAAGATGAGATGCCAATATGCTAATTCAAGGCCAACTA
1 TGAGTCAAGGCCAGCGACATTGGACTTAAAGATGAGGTGCCAATATGCTAATTCAAGGCCAACTA
615049 TATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTG
66 TATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTG
615114 AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGATAAAGGTGCCAATATG
131 AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGATAAAGGTGCCAATATG
* *
615179 GTGATTCAAGGCCAGCTATATTCGTCCCCACATATGTTGAATCCTCCACCTACTAGCTAGGCCTT
196 CTGATTCAAGGCCAGCTATATTCGTCCCCACATATGTTGAATCCTCCACCTACTAGCTAGGCCCT
*
615244 AAATTGTTGAAAATTGGCCCGGACAAAATGAGGTGTCTACAGCTACCCCTCTTTGGCCGTTTCTG
261 AAATTGTTGAAAATTGGCCCAGACAAAATGAGGTGTCTACAGCTACCCCTCTTTGGCCGTTTCTG
615309 AGTATCAAGAACAGGCCAAAGACAAATAGACACCATTTTGTCTGCGGCCGCATGTCATGACCTTT
326 AGTATCAAGAACAGGCCAAAGACAAATAGACACCATTTTGTCTGCGGCCGCATGTCATGACCTTT
*
615374 GGTGATTTATGCTTCGCCGTGATGAAGAGTGCATTGGCGACGGTTCCGATGGAAAAATGGGTTTG
391 GGTGATTTATGCTTCGCCGTGATGAAGAGTGCATTGGCGACGGTTCCGATGGAAAAATGAGTTTG
615439 TAGGGTTTGTCCTCCCTACTAGGTTTTGGAATTTTGCTAAGGCTTGACCTCCTTAGATAGGTGTA
456 TAGGGTTTGTCCTCCCTACTAGGTTTTGGAATTTT-CTAAGGCTTGACCTCCTTAGATAGGTGTA
* * * *
615504 GGTTGGTGTAGAGTTTGGAACGGATTTTAGAAGAATATGGGCAGTATTTTGCAATGTGCCACTGT
520 GATTGGTGTAGAGTTTGGAACGGATTGTAGAAGAATATGGTCAGTATTTTGCAATGTGCCACTAT
*
615569 GTAGATTCAAGGCCTACCACACTGGACTTAAAGATGATGAGGATGAAGAGTGATAAAAGGACCAG
585 GCAGATTCAAGGCCTACCACACTGGACTTAAAGATGATGAGGATGAAGAGTGATAAAAGGACCAG
615634 TACGTTGATTCACGGCCAACGATATTGGGTTTAAAGATGAGAAAAAGGATGTCAATATGCTGATT
650 TACGTTGATTCACGGCCAACGATATTGGGTTTAAAGATGAGAAAAAGGATGTCAATATGCTGATT
*
615699 CACGGTCAGCAACAGTTAGACTTGAAGATGAGAAGAATGCCAATGTGCTGATTCAAGGCCAATGG
715 CACGGTCAGCAACAGTTAGACTTGAAGATGAGAAGAATGCCAATGTGCTGATTCAAGGCCAACGG
*
615764 CATTGGGTTTGAAAAATGATGAAGGCGCCAATATGCTGAGTCAAGGCCAGCGATATTGGACTTAA
780 CATTGGGTTTTAAAAATGATGAAGGCGCCAATATGCTGAGTCAAGGCCAGCGATATTGGACTTAA
*
615829 AGACGAAGGTGCCAATGTGT
845 AGACGAAGGTGCCAATGTCT
* * * * **
615849 TGAGTTAAGGCCAGCGACATTGGACTCAAAGGTGAGGTGCCCATATTTTAATTCAAGGCCAACTA
1 TGAGTCAAGGCCAGCGACATTGGACTTAAAGATGAGGTGCCAATATGCTAATTCAAGGCCAACTA
615914 TATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTG
66 TATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTG
* * ** ** * ****
615979 ATAAAGGTGCCAAGATGCTGATTCAAGGCCAGCTATGTTCGTCCCCACATATGTCGA-ATCCTCT
131 ----AGGTGCCAATATGCTGATTCAAGGCCAGCTATATT-GGACTTA-A-AGGT-GATA-AAGGT
* ** * * ** * * * ** * ** ** * *
616043 ACCAACTA-GCTAGGCCCTAAATTGTTA--AAAATT-GGCACGGACAAAATGAGGTGT-CTACAG
187 GCCAA-TATGCT--G-ATTCAA-GGCCAGCTATATTCGTC-CCCAC-ATATGTTGAATCCTCCAC
* * *** * * * *** * * **
616103 TTGCCCCTCTTTGGCCGTTTCTGAGTATCAGGAACA-T-GCCAAAGAC-AAATAGACACCATTTT
245 CT-ACTAGC-TAGGCC----CTAAAT-TGTTGAAAATTGGCC-CAGACAAAAT-G-----A-GGT
* * ** * * * * *
616165 GTCTACGGCCGCATGTCATGACCTTTGG-TGATTTATGCTTCGCCGTGATGAAGAGTGCATTGG-
295 GTCTACAG-C-TA-CCCCT---CTTTGGCCG--TT-T-C-T-G-AGT-ATCAAGA--ACA--GGC
* * ** * ** * * * * **
616228 CAACGGTTCCGATGGA-AAAATGAGTTTGT-AGGGTTTGTCCTCCCTG-C-T-AGGTTTTGGAAT
342 CAA-AG-ACAAATAGACACCAT---TTTGTCTGCG---G-CC-GCATGTCATGA-CCTTTGG--T
* * ** * * *
616288 -TTTCTAAGGCTT-GACC-TCTTTAGATAG-GTGTAGAGTTTGG-AACGGATT---TTGGAAGAA
394 GATT-T-ATGCTTCG-CCGT-GAT-GA-AGAGTG--CA--TTGGCGACGG-TTCCGATGGAA-AA
** * * * * * *
616345 TATG-GTCAGTA--TTTTG-CAATGTGCC-ACT--G---TGCAGA--TTC-AAGGCCTGCCACAA
447 -ATGAGTTTGTAGGGTTTGTC---CTCCCTACTAGGTTTTGGA-ATTTTCTAAGGCTTG--AC-C
* * ** * * * ** ** * * *
616397 TGGACTTA-A-AGATG-ATGA--GGATAAAGAGTGAT-AAAAGGACCAGTACGTTGATTCACGGC
504 T--CCTTAGATAGGTGTA-GATTGG-TGTAGAGT-TTGGAACGGA-TTGTA-GAAGAAT-ATGGT
* * ** ** * * *** * ***
616456 CAACGATATTGGGTT-TAAAGATGAGAAAAAG--GATGTCAATATG-CTAATTCAC-GGTCAGCA
561 C-A-G-TATT---TTGCAATG-TGCCACTATGCAGAT-TC-A-AGGCCTACCACACTGGACTTAA
* * * * * ** * * **
616516 ACA-G-TTA-GACTGGAAGA-TGAGAAGAATG-CCAATGTGCTGATTCAAGGCCAACGGCATTGG
616 AGATGATGAGGA-T-GAAGAGTGATAA-AAGGACCAGTACGTTGATTCACGGCCAACGATATTGG
* * * * * * * * * *
616576 GTTTTAAAAATGATG---AAGG-CGCCAATATGCTGAGTCAAGGCCAACGATA-TTGGACTT-AA
678 G-TTTAAAGATGA-GAAAAAGGATGTCAATATGCTGATTCACGGTCAGCAACAGTTAGACTTGAA
* * * * * * ** *
616635 -A-GACGAAG-GTGCCAATGTGTTGAGTCAAGGCCAGCGACATT-AGACTT--AAA-GATG-AGA
741 GATGA-GAAGAATGCCAATGTGCTGATTCAAGGCCAACGGCATTGGGTTTTAAAAATGATGAAGG
* * * * * * ** *
616692 TGCCAATATGCTAATTAAAGGCCAACTATATTGGACTTAAAGGTG-AGGTGCCAATATGC-
805 CGCCAATATGCTGAGTCAAGGCCAGCGATATTGGACTTAAAGACGAAGGTGCCAATGT-CT
* * * * * *
616751 TGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTA
1 TGAGTCAAGGCCAGCGACATTGGACTTAAAGATGAGGTGCCAATATGCTAATTCAAGGCCAACTA
*
616816 TATTGGACTTAAAGATGAGGTGCCAATATGCTGATTCAAGGCCAGCTGTATTCAAGGCCAGCTAT
66 TATTGGACTTAAAGGTGAGGTGCC-A-A---T-A-T--------GCTG-ATTCAAGGCCAGCTAT
616881 ATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGA
115 ATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGA
616946 TAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTCGTCCCCACATATGTTGAATCCTCCAC
180 TAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTCGTCCCCACATATGTTGAATCCTCCAC
*
617011 CTACTAGCTAGGCCCTAAATTGTTGAAAATTGGCCCGGACAAAATGAGGTGTCTACAGCTACCCC
245 CTACTAGCTAGGCCCTAAATTGTTGAAAATTGGCCCAGACAAAATGAGGTGTCTACAGCTACCCC
617076 TCTTTGGCCGTTTCTGAGTATCAAGAACAGGCCAAAGACAAATAGACACCATTTTGTCTGCGGCC
310 TCTTTGGCCGTTTCTGAGTATCAAGAACAGGCCAAAGACAAATAGACACCATTTTGTCTGCGGCC
*
617141 GCATGTCATGACCTTTGGTGATTAATGCTTCGCCGTGATGAAGAGTGCATTGGCGACGGTTCCGA
375 GCATGTCATGACCTTTGGTGATTTATGCTTCGCCGTGATGAAGAGTGCATTGGCGACGGTTCCGA
*
617206 TGGAAAAATGAGTTTGTAGGGTTTGTCCTCCCTACTAGGTTTTGGAGTTTTCTAAGGCTTGACCT
440 TGGAAAAATGAGTTTGTAGGGTTTGTCCTCCCTACTAGGTTTTGGAATTTTCTAAGGCTTGACCT
* *
617271 CCTGAGATAGGTGTAGATTGGTGTAGAGTTTGGAACGGATTGTGGAAGAATATGGTCAGTATTTT
505 CCTTAGATAGGTGTAGATTGGTGTAGAGTTTGGAACGGATTGTAGAAGAATATGGTCAGTATTTT
* *
617336 GCAATGTGCCACTATGCAGATTCAAGGCCTGCCACACTGGACTTAAAGATGGTGAGGATGAAGAG
570 GCAATGTGCCACTATGCAGATTCAAGGCCTACCACACTGGACTTAAAGATGATGAGGATGAAGAG
617401 TGATAAAAGGACCAGTACGTTGATTCACGGCCAACGATATTGGGTTTAAAGATGAGAAAAAGGAT
635 TGATAAAAGGACCAGTACGTTGATTCACGGCCAACGATATTGGGTTTAAAGATGAGAAAAAGGAT
*
617466 GTCAATATGCTGACTCACGGTCAGCAACAGTTAGACTTGAAGATGAGAAGAATGCCAATGTGCTG
700 GTCAATATGCTGATTCACGGTCAGCAACAGTTAGACTTGAAGATGAGAAGAATGCCAATGTGCTG
617531 ATTCAAGGCCAACGGCATTGGGTTTTAAAAATGATGAAGGCCGCCAATATGCTGAGTCAAGGCCA
765 ATTCAAGGCCAACGGCATTGGGTTTTAAAAATGATGAAGG-CGCCAATATGCTGAGTCAAGGCCA
*
617596 GCGATATTGGACTTAAAGACGAAGGTGCCAATGTGT
829 GCGATATTGGACTTAAAGACGAAGGTGCCAATGTCT
* * *
617632 TGAGTCAAGGCCAGTGACATTGGACTTAAAGATGACGTGCCAATATGCTGATTCAAGGCCAACTA
1 TGAGTCAAGGCCAGCGACATTGGACTTAAAGATGAGGTGCCAATATGCTAATTCAAGGCCAACTA
* *
617697 TATTGGACTTAAAAGAGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTG
66 TATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTG
* *
617762 AGGTGCCAATATGCTGATTAAAGGCCAACTATATTGGACTT-AAGGTG----AGGTGCCAATATG
131 AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGATAAAGGTGCCAATATG
* *
617822 CTGACTCAAGGCCGGCTATATT
196 CTGATTCAAGGCCAGCTATATT
617844 GGATTTAAAG
Statistics
Matches: 2265, Mismatches: 401, Indels: 393
0.74 0.13 0.13
Matches are distributed among these distances:
860 33 0.01
864 436 0.19
865 590 0.26
866 22 0.01
867 29 0.01
868 49 0.02
869 50 0.02
870 35 0.02
871 25 0.01
872 17 0.01
873 29 0.01
874 59 0.03
875 23 0.01
876 24 0.01
877 12 0.01
878 9 0.00
879 9 0.00
880 48 0.02
881 100 0.04
882 5 0.00
883 6 0.00
884 2 0.00
885 1 0.00
886 2 0.00
887 9 0.00
888 2 0.00
889 3 0.00
890 8 0.00
891 1 0.00
892 1 0.00
893 8 0.00
894 3 0.00
895 2 0.00
896 9 0.00
897 2 0.00
898 1 0.00
899 2 0.00
900 6 0.00
901 5 0.00
902 100 0.04
903 50 0.02
904 11 0.00
905 8 0.00
906 16 0.01
907 22 0.01
908 60 0.03
909 29 0.01
910 23 0.01
911 26 0.01
912 34 0.02
913 19 0.01
914 81 0.04
915 33 0.01
916 19 0.01
917 23 0.01
918 34 0.02
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.27
Consensus pattern (864 bp):
TGAGTCAAGGCCAGCGACATTGGACTTAAAGATGAGGTGCCAATATGCTAATTCAAGGCCAACTA
TATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTG
AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGATAAAGGTGCCAATATG
CTGATTCAAGGCCAGCTATATTCGTCCCCACATATGTTGAATCCTCCACCTACTAGCTAGGCCCT
AAATTGTTGAAAATTGGCCCAGACAAAATGAGGTGTCTACAGCTACCCCTCTTTGGCCGTTTCTG
AGTATCAAGAACAGGCCAAAGACAAATAGACACCATTTTGTCTGCGGCCGCATGTCATGACCTTT
GGTGATTTATGCTTCGCCGTGATGAAGAGTGCATTGGCGACGGTTCCGATGGAAAAATGAGTTTG
TAGGGTTTGTCCTCCCTACTAGGTTTTGGAATTTTCTAAGGCTTGACCTCCTTAGATAGGTGTAG
ATTGGTGTAGAGTTTGGAACGGATTGTAGAAGAATATGGTCAGTATTTTGCAATGTGCCACTATG
CAGATTCAAGGCCTACCACACTGGACTTAAAGATGATGAGGATGAAGAGTGATAAAAGGACCAGT
ACGTTGATTCACGGCCAACGATATTGGGTTTAAAGATGAGAAAAAGGATGTCAATATGCTGATTC
ACGGTCAGCAACAGTTAGACTTGAAGATGAGAAGAATGCCAATGTGCTGATTCAAGGCCAACGGC
ATTGGGTTTTAAAAATGATGAAGGCGCCAATATGCTGAGTCAAGGCCAGCGATATTGGACTTAAA
GACGAAGGTGCCAATGTCT
Found at i:615859 original size:49 final size:49
Alignment explanation
Indices: 615790--616011 Score: 238
Period size: 48 Copynumber: 4.5 Consensus size: 49
615780 TGATGAAGGC
**
615790 GCCAATATGCTGAG-TCAAGGCCAGCGATATTGGACTTAAAGACGAAGGT
1 GCCAATATGCTGAGTTCAAGGCCAGCGATATTGGACTTAAAGGTG-AGGT
* * * *
615839 GCCAATGTGTTGAGTT-AAGGCCAGCGACATTGGACTCAAAGGTGAGGT
1 GCCAATATGCTGAGTTCAAGGCCAGCGATATTGGACTTAAAGGTGAGGT
* * * * * *
615887 GCCCATAT-TTTAATTCAAGGCCAACTATATTGGACTTAAAGGTGAGGT
1 GCCAATATGCTGAGTTCAAGGCCAGCGATATTGGACTTAAAGGTGAGGT
*
615935 GCCAATATGCTGA-TTCAAGGCCAGCTATATTGGACTTAAAGGTGATAAAGGT
1 GCCAATATGCTGAGTTCAAGGCCAGCGATATTGGACTTAAAGGTG----AGGT
*
615987 GCCAAGATGCTGA-TTCAAGGCCAGC
1 GCCAATATGCTGAGTTCAAGGCCAGC
616012 TATGTTCGTC
Statistics
Matches: 147, Mismatches: 19, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
47 5 0.03
48 75 0.51
49 38 0.26
50 1 0.01
52 28 0.19
ACGTcount: A:0.31, C:0.18, G:0.27, T:0.24
Consensus pattern (49 bp):
GCCAATATGCTGAGTTCAAGGCCAGCGATATTGGACTTAAAGGTGAGGT
Found at i:616715 original size:48 final size:48
Alignment explanation
Indices: 616587--616983 Score: 398
Period size: 48 Copynumber: 7.8 Consensus size: 48
616577 TTTTAAAAAT
* * * *
616587 GATGAAGGCGCCAATATGCTGAGTCAAGGCCAACGATATTGGACTTAAA
1 GATG-AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
* * * * * * *
616636 GACGAAGGTGCCAATGTGTTGAGTCAAGGCCAGCGACATTAGACTTAAA
1 GATG-AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
* * * *
616685 GATGAGATGCCAATATGCTAATTAAAGGCCAACTATATTGGACTTAAA
1 GATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
*
616733 GGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
1 GATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
*
616781 GGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
1 GATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
* **
616829 GATGAGGTGCCAATATGCTGATTCAAGGCCAGCTGTATTCAAGGCCAGCTATATTG
1 GATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATT---GG--A-CT-TA-AA
*
616885 GACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
1 GA--T-GAGG-----TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
*
616941 GGTGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATT
1 ---GAT-GAGGTGCCAATATGCTGATTCAAGGCCAGCTATATT
616984 CGTCCCCACA
Statistics
Matches: 298, Mismatches: 31, Indels: 35
0.82 0.09 0.10
Matches are distributed among these distances:
48 162 0.54
49 45 0.15
51 2 0.01
52 32 0.11
53 1 0.00
54 2 0.01
55 2 0.01
56 2 0.01
57 8 0.03
58 3 0.01
59 6 0.02
61 2 0.01
64 31 0.10
ACGTcount: A:0.32, C:0.17, G:0.26, T:0.25
Consensus pattern (48 bp):
GATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
Found at i:616725 original size:806 final size:812
Alignment explanation
Indices: 614984--616819 Score: 3082
Period size: 806 Copynumber: 2.3 Consensus size: 812
614974 GCCAATGTCT
* * * * * * * * * * *
614984 TGAGTCAGGGCCAGCGACATTAGACTTAAAGATG-AGATGCCAATATGCTAATTCAAGGCCAACT
1 TGAGTCAAGGCCAGCGATATTGGACTTAAAGACGAAGGTGCCAATGTGTTGAGTCAAGGCCAGCG
* * *
615048 ATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGT
66 ACATTGGACTTAAAGGTGAGGTGCCAATATGCTAATTCAAGGCCAACTATATTGGACTTAAAGGT
615113 GAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGATAAAGGTGCCAATAT
131 GAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGATAAAGGTGCCAATAT
* * * *
615178 GGTGATTCAAGGCCAGCTATATTCGTCCCCACATATGTTGAATCCTCCACCTACTAGCTAGGCCT
196 GCTGATTCAAGGCCAGCTATATTCGTCCCCACATATGTCGAATCCTCCACCAACTAGCTAGGCCC
* *
615243 TAAATTGTTGAAAATTGGCCCGGACAAAATGAGGTGTCTACAGCTACCCCTCTTTGGCCGTTTCT
261 TAAATTGTTAAAAATTGGCACGGACAAAATGAGGTGTCTACAGCTACCCCTCTTTGGCCGTTTCT
*
615308 GAGTATCAAGAACAGGCCAAAGACAAATAGACACCATTTTGTCTGCGGCCGCATGTCATGACCTT
326 GAGTATCAAGAACAGGCCAAAGACAAATAGACACCATTTTGTCTACGGCCGCATGTCATGACCTT
* *
615373 TGGTGATTTATGCTTCGCCGTGATGAAGAGTGCATTGGCGACGGTTCCGATGGAAAAATGGGTTT
391 TGGTGATTTATGCTTCGCCGTGATGAAGAGTGCATTGGCAACGGTTCCGATGGAAAAATGAGTTT
615438 GTAGGGTTTGTCCTCCCTACTAGGTTTTGGAATTTTGCTAAGGCTTGACCTCCTTAGATAGGTGT
456 GTAGGGTTTGTCCTCCCTACTAGGTTTTGGAATTTTGCTAAGGCTTGACCTCCTT--ATA-G-GT
*
615503 AGGTTGGTGTAGAGTTTGGAACGGATTTTAGAAGAATATGGGCAGTATTTTGCAATGTGCCACTG
517 A-GTAGGTGTAGAGTTTGGAACGGATTTTAGAAGAATATGGGCAGTATTTTGCAATGTGCCACTG
* * *
615568 TGTAGATTCAAGGCCTACCACACTGGACTTAAAGATGATGAGGATGAAGAGTGATAAAAGGACCA
581 TGCAGATTCAAGGCCTACCACAATGGACTTAAAGATGATGAGGATAAAGAGTGATAAAAGGACCA
*
615633 GTACGTTGATTCACGGCCAACGATATTGGGTTTAAAGATGAGAAAAAGGATGTCAATATGCTGAT
646 GTACGTTGATTCACGGCCAACGATATTGGGTTTAAAGATGAGAAAAAGGATGTCAATATGCTAAT
* *
615698 TCACGGTCAGCAACAGTTAGACTTGAAGATGAGAAGAATGCCAATGTGCTGATTCAAGGCCAATG
711 TCACGGTCAGCAACAGTTAGACTGGAAGATGAGAAGAATGCCAATGTGCTGATTCAAGGCCAACG
615763 GCATTGGGTTTGAAAAATGATGAAGGCGCCAATATGC
776 GCATTGGGTTTGAAAAATGATGAAGGCGCCAATATGC
*
615800 TGAGTCAAGGCCAGCGATATTGGACTTAAAGACGAAGGTGCCAATGTGTTGAGTTAAGGCCAGCG
1 TGAGTCAAGGCCAGCGATATTGGACTTAAAGACGAAGGTGCCAATGTGTTGAGTCAAGGCCAGCG
* * **
615865 ACATTGGACTCAAAGGTGAGGTGCCCATATTTTAATTCAAGGCCAACTATATTGGACTTAAAGGT
66 ACATTGGACTTAAAGGTGAGGTGCCAATATGCTAATTCAAGGCCAACTATATTGGACTTAAAGGT
*
615930 GAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGATAAAGGTGCCAAGAT
131 GAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGATAAAGGTGCCAATAT
* *
615995 GCTGATTCAAGGCCAGCTATGTTCGTCCCCACATATGTCGAATCCTCTACCAACTAGCTAGGCCC
196 GCTGATTCAAGGCCAGCTATATTCGTCCCCACATATGTCGAATCCTCCACCAACTAGCTAGGCCC
* *
616060 TAAATTGTTAAAAATTGGCACGGACAAAATGAGGTGTCTACAGTTGCCCCTCTTTGGCCGTTTCT
261 TAAATTGTTAAAAATTGGCACGGACAAAATGAGGTGTCTACAGCTACCCCTCTTTGGCCGTTTCT
* *
616125 GAGTATCAGGAACATGCCAAAGACAAATAGACACCATTTTGTCTACGGCCGCATGTCATGACCTT
326 GAGTATCAAGAACAGGCCAAAGACAAATAGACACCATTTTGTCTACGGCCGCATGTCATGACCTT
616190 TGGTGATTTATGCTTCGCCGTGATGAAGAGTGCATTGGCAACGGTTCCGATGGAAAAATGAGTTT
391 TGGTGATTTATGCTTCGCCGTGATGAAGAGTGCATTGGCAACGGTTCCGATGGAAAAATGAGTTT
*
616255 GTAGGGTTTGTCCTCCCTGCTAGGTTTTGGAATTTT-CTAAGGCTTGACCT-CTT-TA-G-A-TA
456 GTAGGGTTTGTCCTCCCTACTAGGTTTTGGAATTTTGCTAAGGCTTGACCTCCTTATAGGTAGTA
* *
616314 GGTGTAGAGTTTGGAACGGATTTTGGAAGAATATGGTCAGTATTTTGCAATGTGCCACTGTGCAG
521 GGTGTAGAGTTTGGAACGGATTTTAGAAGAATATGGGCAGTATTTTGCAATGTGCCACTGTGCAG
*
616379 ATTCAAGGCCTGCCACAATGGACTTAAAGATGATGAGGATAAAGAGTGATAAAAGGACCAGTACG
586 ATTCAAGGCCTACCACAATGGACTTAAAGATGATGAGGATAAAGAGTGATAAAAGGACCAGTACG
616444 TTGATTCACGGCCAACGATATTGGGTTTAAAGATGAGAAAAAGGATGTCAATATGCTAATTCACG
651 TTGATTCACGGCCAACGATATTGGGTTTAAAGATGAGAAAAAGGATGTCAATATGCTAATTCACG
616509 GTCAGCAACAGTTAGACTGGAAGATGAGAAGAATGCCAATGTGCTGATTCAAGGCCAACGGCATT
716 GTCAGCAACAGTTAGACTGGAAGATGAGAAGAATGCCAATGTGCTGATTCAAGGCCAACGGCATT
*
616574 GGGTTTTAAAAATGATGAAGGCGCCAATATGC
781 GGGTTTGAAAAATGATGAAGGCGCCAATATGC
*
616606 TGAGTCAAGGCCAACGATATTGGACTTAAAGACGAAGGTGCCAATGTGTTGAGTCAAGGCCAGCG
1 TGAGTCAAGGCCAGCGATATTGGACTTAAAGACGAAGGTGCCAATGTGTTGAGTCAAGGCCAGCG
* * * *
616671 ACATTAGACTTAAAGATGAGATGCCAATATGCTAATTAAAGGCCAACTATATTGGACTTAAAGGT
66 ACATTGGACTTAAAGGTGAGGTGCCAATATGCTAATTCAAGGCCAACTATATTGGACTTAAAGGT
616736 GAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTG----AGGTGCCAATAT
131 GAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGATAAAGGTGCCAATAT
616797 GCTGATTCAAGGCCAGCTATATT
196 GCTGATTCAAGGCCAGCTATATT
616820 GGACTTAAAG
Statistics
Matches: 960, Mismatches: 59, Indels: 16
0.93 0.06 0.02
Matches are distributed among these distances:
802 33 0.03
806 452 0.47
808 1 0.00
809 1 0.00
812 2 0.00
815 3 0.00
816 44 0.05
817 424 0.44
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.27
Consensus pattern (812 bp):
TGAGTCAAGGCCAGCGATATTGGACTTAAAGACGAAGGTGCCAATGTGTTGAGTCAAGGCCAGCG
ACATTGGACTTAAAGGTGAGGTGCCAATATGCTAATTCAAGGCCAACTATATTGGACTTAAAGGT
GAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGATAAAGGTGCCAATAT
GCTGATTCAAGGCCAGCTATATTCGTCCCCACATATGTCGAATCCTCCACCAACTAGCTAGGCCC
TAAATTGTTAAAAATTGGCACGGACAAAATGAGGTGTCTACAGCTACCCCTCTTTGGCCGTTTCT
GAGTATCAAGAACAGGCCAAAGACAAATAGACACCATTTTGTCTACGGCCGCATGTCATGACCTT
TGGTGATTTATGCTTCGCCGTGATGAAGAGTGCATTGGCAACGGTTCCGATGGAAAAATGAGTTT
GTAGGGTTTGTCCTCCCTACTAGGTTTTGGAATTTTGCTAAGGCTTGACCTCCTTATAGGTAGTA
GGTGTAGAGTTTGGAACGGATTTTAGAAGAATATGGGCAGTATTTTGCAATGTGCCACTGTGCAG
ATTCAAGGCCTACCACAATGGACTTAAAGATGATGAGGATAAAGAGTGATAAAAGGACCAGTACG
TTGATTCACGGCCAACGATATTGGGTTTAAAGATGAGAAAAAGGATGTCAATATGCTAATTCACG
GTCAGCAACAGTTAGACTGGAAGATGAGAAGAATGCCAATGTGCTGATTCAAGGCCAACGGCATT
GGGTTTGAAAAATGATGAAGGCGCCAATATGC
Found at i:616870 original size:16 final size:16
Alignment explanation
Indices: 616845--616883 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
616835 GTGCCAATAT
616845 GCTG-ATTCAAGGCCA
1 GCTGTATTCAAGGCCA
616860 GCTGTATTCAAGGCCA
1 GCTGTATTCAAGGCCA
*
616876 GCTATATT
1 GCTGTATT
616884 GGACTTAAAG
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
15 4 0.18
16 18 0.82
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (16 bp):
GCTGTATTCAAGGCCA
Found at i:616902 original size:64 final size:64
Alignment explanation
Indices: 616797--616931 Score: 245
Period size: 64 Copynumber: 2.1 Consensus size: 64
616787 GTGCCAATAT
616797 GCTG-ATTCAAGGCCAGCTATATTGGACTTAAAGATGAGGTGCCAATATGCTGATTCAAGGCCA
1 GCTGTATTCAAGGCCAGCTATATTGGACTTAAAGATGAGGTGCCAATATGCTGATTCAAGGCCA
*
616860 GCTGTATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCA
1 GCTGTATTCAAGGCCAGCTATATTGGACTTAAAGATGAGGTGCCAATATGCTGATTCAAGGCCA
*
616924 GCTATATT
1 GCTGTATT
616932 GGACTTAAAG
Statistics
Matches: 69, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
63 4 0.06
64 65 0.94
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (64 bp):
GCTGTATTCAAGGCCAGCTATATTGGACTTAAAGATGAGGTGCCAATATGCTGATTCAAGGCCA
Found at i:616975 original size:52 final size:48
Alignment explanation
Indices: 616860--616983 Score: 203
Period size: 52 Copynumber: 2.5 Consensus size: 48
616850 TTCAAGGCCA
616860 GCTGTATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAATAT
1 GCTG-ATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAATAT
616909 GCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGATAAAGGTGCCAATAT
1 GCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTG----AGGTGCCAATAT
616961 GCTGATTCAAGGCCAGCTATATT
1 GCTGATTCAAGGCCAGCTATATT
616984 CGTCCCCACA
Statistics
Matches: 71, Mismatches: 0, Indels: 5
0.93 0.00 0.07
Matches are distributed among these distances:
48 32 0.45
49 4 0.06
52 35 0.49
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (48 bp):
GCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAATAT
Found at i:617691 original size:48 final size:47
Alignment explanation
Indices: 617573--617943 Score: 413
Period size: 48 Copynumber: 7.6 Consensus size: 47
617563 GATGAAGGCC
* * *
617573 GCCAATATGCTGAGTCAAGGCCAGCGATATTGGACTTAAAGACGAAGGT
1 GCCAATATGCTGATTCAAGGCCAG-TATATTGGACTTAAAGATG-AGGT
* * * * *
617622 GCCAATGTGTTGAGTCAAGGCCAGTGACATTGGACTTAAAGATGACGT
1 GCCAATATGCTGATTCAAGGCCAGT-ATATTGGACTTAAAGATGAGGT
*
617670 GCCAATATGCTGATTCAAGGCCAACTATATTGGACTTAAAAGA-GAGGT
1 GCCAATATGCTGATTCAAGGCC-AGTATATTGGACTT-AAAGATGAGGT
*
617718 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGT
1 GCCAATATGCTGATTCAAGGCCAG-TATATTGGACTTAAAGATGAGGT
* * *
617766 GCCAATATGCTGATTAAAGGCCAACTATATTGGACTT-AAGGTGAGGT
1 GCCAATATGCTGATTCAAGGCC-AGTATATTGGACTTAAAGATGAGGT
* * * *
617813 GCCAATATGCTGACTCAAGGCCGGCTATATTGGATTTAAAGGTGAGGT
1 GCCAATATGCTGATTCAAGGCCAG-TATATTGGACTTAAAGATGAGGT
*
617861 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGATAAAGGT
1 GCCAATATGCTGATTCAAGGCCAG-TATATTGGACTTAAA---GAT-GAGGT
* * *
617913 GCTAATATGCTTATTTAAGGCCAGCTATATT
1 GCCAATATGCTGATTCAAGGCCAG-TATATT
617944 CGTCCCCACA
Statistics
Matches: 281, Mismatches: 29, Indels: 21
0.85 0.09 0.06
Matches are distributed among these distances:
47 46 0.16
48 155 0.55
49 46 0.16
51 2 0.01
52 32 0.11
ACGTcount: A:0.31, C:0.16, G:0.26, T:0.27
Consensus pattern (47 bp):
GCCAATATGCTGATTCAAGGCCAGTATATTGGACTTAAAGATGAGGT
Found at i:617854 original size:95 final size:96
Alignment explanation
Indices: 617573--617943 Score: 476
Period size: 95 Copynumber: 3.8 Consensus size: 96
617563 GATGAAGGCC
* * * ** * * *
617573 GCCAATATGCTGAGTCAAGGCCAGCGATATTGGACTTAAAGACGAAGGTGCCAATGTGTTGAGTC
1 GCCAATATGCTGATTCAAGGCCAACTATATTGGACTTAAAGGTG-AGGTGCCAATATGCTGACTC
* * *
617638 AAGGCCAG-TGACATTGGACTTAAAGATGACGT
65 AAGGCCAGCT-ATATTGGACTTAAAGGTGAGGT
* * *
617670 GCCAATATGCTGATTCAAGGCCAACTATATTGGACTTAAAAGAGAGGTGCCAATATGCTGATTCA
1 GCCAATATGCTGATTCAAGGCCAACTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGACTCA
617735 AGGCCAGCTATATTGGACTTAAAGGTGAGGT
66 AGGCCAGCTATATTGGACTTAAAGGTGAGGT
*
617766 GCCAATATGCTGATTAAAGGCCAACTATATTGGACTT-AAGGTGAGGTGCCAATATGCTGACTCA
1 GCCAATATGCTGATTCAAGGCCAACTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGACTCA
* *
617830 AGGCCGGCTATATTGGATTTAAAGGTGAGGT
66 AGGCCAGCTATATTGGACTTAAAGGTGAGGT
* * *
617861 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGATAAAGGTGCTAATATGCTTA
1 GCCAATATGCTGATTCAAGGCCAACTATATTGGACTTAAAGGTG----AGGTGCCAATATGCTGA
* *
617926 TTTAAGGCCAGCTATATT
62 CTCAAGGCCAGCTATATT
617944 CGTCCCCACA
Statistics
Matches: 243, Mismatches: 25, Indels: 9
0.88 0.09 0.03
Matches are distributed among these distances:
95 88 0.36
96 86 0.35
97 39 0.16
100 30 0.12
ACGTcount: A:0.31, C:0.16, G:0.26, T:0.27
Consensus pattern (96 bp):
GCCAATATGCTGATTCAAGGCCAACTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGACTCA
AGGCCAGCTATATTGGACTTAAAGGTGAGGT
Found at i:617860 original size:143 final size:145
Alignment explanation
Indices: 617573--617943 Score: 487
Period size: 143 Copynumber: 2.6 Consensus size: 145
617563 GATGAAGGCC
* * ** * * * *
617573 GCCAATATGCTGAGTCAAGGCCAGCGATATTGGACTTAAAGACGAAGGTGCCAATGTGTTGAGTC
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAAGGTGCCAATATGCTGATTA
* * *
617638 AAGGCC-AGTGACATTGGACTTAAAGATGACGTGCCAATATGCTGATTCAAGGCCAACTATATTG
66 AAGGCCAACT-ATATTGGACTTAAAGATGACGTGCCAATATGCTGACTCAAGGCCAACTATATTG
617702 GACTTAAAAGAGAGGT
130 GACTTAAAAGAGAGGT
617718 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTG-AGGTGCCAATATGCTGATTA
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAAGGTGCCAATATGCTGATTA
* * **
617782 AAGGCCAACTATATTGGACTT-AAGGTGAGGTGCCAATATGCTGACTCAAGGCCGGCTATATTGG
66 AAGGCCAACTATATTGGACTTAAAGATGACGTGCCAATATGCTGACTCAAGGCCAACTATATTGG
* * *
617846 ATTTAAAGGTGAGGT
131 ACTTAAAAGAGAGGT
* *
617861 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGATAAAGGTGCTAATATGCTTA
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTG---AAGGTGCCAATATGCTGA
* *
617926 TTTAAGGCCAGCTATATT
63 TTAAAGGCCAACTATATT
617944 CGTCCCCACA
Statistics
Matches: 199, Mismatches: 22, Indels: 8
0.87 0.10 0.03
Matches are distributed among these distances:
143 94 0.47
144 32 0.16
145 42 0.21
147 31 0.16
ACGTcount: A:0.31, C:0.16, G:0.26, T:0.27
Consensus pattern (145 bp):
GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAAGGTGCCAATATGCTGATTA
AAGGCCAACTATATTGGACTTAAAGATGACGTGCCAATATGCTGACTCAAGGCCAACTATATTGG
ACTTAAAAGAGAGGT
Found at i:618646 original size:48 final size:48
Alignment explanation
Indices: 618530--619109 Score: 746
Period size: 48 Copynumber: 11.6 Consensus size: 48
618520 TGATGAAGGC
* * * **
618530 GCCAATATGTTGAGTCAAGGCCAGCGATATTGGACTTAAAGACGAAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTG-AGGT
* * * * * * *
618579 GCCAATGTGTTGAGTCAAGGCCGGCGACATTGGACTTAAAGATGAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGT
* * * *
618627 GCAAATATGTTGATTCAAGGCCAACTACATTGGACTTAAAGGTGAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGT
*
618675 GCCAATATGCTGATTCAAGACCAGCTATATTGGACTTAAAGGTGAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGT
**
618723 GCCAATATGCTGATTCAAGGCCAATTATATTGGACTTAAAGGTGAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGT
618771 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGT
*
618819 GCCAATATGCTGATTCAAGGACAGCTATATTGGACTTAAAGGTGAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGT
618867 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGT
*
618915 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGT
* ** *
618963 GCCAATATGCTGATTCAAGGCCAGCTGTATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATT---GG--A-CT-TAAAGG---T-GAGG-----T
619027 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGATAAAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTG----AGGT
619079 GCCAATATGCTGATTCAAGGCCAGCTATATT
1 GCCAATATGCTGATTCAAGGCCAGCTATATT
619110 CGTCCCCACA
Statistics
Matches: 478, Mismatches: 33, Indels: 37
0.87 0.06 0.07
Matches are distributed among these distances:
48 350 0.73
49 40 0.08
51 2 0.00
52 32 0.07
53 1 0.00
54 3 0.01
55 3 0.01
57 7 0.01
58 3 0.01
59 4 0.01
61 2 0.00
64 31 0.06
ACGTcount: A:0.31, C:0.17, G:0.26, T:0.27
Consensus pattern (48 bp):
GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGT
Found at i:618886 original size:26 final size:26
Alignment explanation
Indices: 618809--618886 Score: 60
Period size: 26 Copynumber: 3.2 Consensus size: 26
618799 ATTGGACTTA
618809 AAGGTGAGGTGCCAATATGCTGATTC
1 AAGGTGAGGTGCCAATATGCTGATTC
** * *
618835 AA-G-GA-CAG-CTATAT--TGGACTTA
1 AAGGTGAGGTGCCAATATGCT-GA-TTC
618857 AAGGTGAGGTGCCAATATGCTGATTC
1 AAGGTGAGGTGCCAATATGCTGATTC
618883 AAGG
1 AAGG
618887 CCAGCTATAT
Statistics
Matches: 36, Mismatches: 8, Indels: 16
0.60 0.13 0.27
Matches are distributed among these distances:
20 1 0.03
21 2 0.06
22 9 0.25
23 2 0.06
24 4 0.11
25 2 0.06
26 13 0.36
27 2 0.06
28 1 0.03
ACGTcount: A:0.31, C:0.14, G:0.29, T:0.26
Consensus pattern (26 bp):
AAGGTGAGGTGCCAATATGCTGATTC
Found at i:618996 original size:16 final size:16
Alignment explanation
Indices: 618971--619009 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
618961 GTGCCAATAT
618971 GCTG-ATTCAAGGCCA
1 GCTGTATTCAAGGCCA
618986 GCTGTATTCAAGGCCA
1 GCTGTATTCAAGGCCA
*
619002 GCTATATT
1 GCTGTATT
619010 GGACTTAAAG
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
15 4 0.18
16 18 0.82
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (16 bp):
GCTGTATTCAAGGCCA
Found at i:619028 original size:64 final size:64
Alignment explanation
Indices: 618923--619057 Score: 245
Period size: 64 Copynumber: 2.1 Consensus size: 64
618913 GTGCCAATAT
618923 GCTG-ATTCAAGGCCAGCTATATTGGACTTAAAGATGAGGTGCCAATATGCTGATTCAAGGCCA
1 GCTGTATTCAAGGCCAGCTATATTGGACTTAAAGATGAGGTGCCAATATGCTGATTCAAGGCCA
*
618986 GCTGTATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCA
1 GCTGTATTCAAGGCCAGCTATATTGGACTTAAAGATGAGGTGCCAATATGCTGATTCAAGGCCA
*
619050 GCTATATT
1 GCTGTATT
619058 GGACTTAAAG
Statistics
Matches: 69, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
63 4 0.06
64 65 0.94
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (64 bp):
GCTGTATTCAAGGCCAGCTATATTGGACTTAAAGATGAGGTGCCAATATGCTGATTCAAGGCCA
Found at i:619101 original size:52 final size:48
Alignment explanation
Indices: 618986--619109 Score: 203
Period size: 52 Copynumber: 2.5 Consensus size: 48
618976 TTCAAGGCCA
618986 GCTGTATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAATAT
1 GCTG-ATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAATAT
619035 GCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGATAAAGGTGCCAATAT
1 GCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTG----AGGTGCCAATAT
619087 GCTGATTCAAGGCCAGCTATATT
1 GCTGATTCAAGGCCAGCTATATT
619110 CGTCCCCACA
Statistics
Matches: 71, Mismatches: 0, Indels: 5
0.93 0.00 0.07
Matches are distributed among these distances:
48 32 0.45
49 4 0.06
52 35 0.49
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (48 bp):
GCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAATAT
Found at i:619816 original size:48 final size:47
Alignment explanation
Indices: 619698--620068 Score: 413
Period size: 48 Copynumber: 7.6 Consensus size: 47
619688 TGATGAAGCC
* * *
619698 GCCAATATGCTGAGTCAAGGCCAGCGATATTGGACTTAAAGACGAAGGT
1 GCCAATATGCTGATTCAAGGCCAG-TATATTGGACTTAAAGATG-AGGT
* * * * *
619747 GCCAATGTGTTGAGTCAAGGCCAGTGACATTGGACTTAAAGATGACGT
1 GCCAATATGCTGATTCAAGGCCAGT-ATATTGGACTTAAAGATGAGGT
*
619795 GCCAATATGCTGATTCAAGGCCAACTATATTGGACTTAAAAGA-GAGGT
1 GCCAATATGCTGATTCAAGGCC-AGTATATTGGACTT-AAAGATGAGGT
*
619843 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGT
1 GCCAATATGCTGATTCAAGGCCAG-TATATTGGACTTAAAGATGAGGT
* * *
619891 GCCAATATGCTGATTAAAGGCCAACTATATTGGACTT-AAGGTGAGGT
1 GCCAATATGCTGATTCAAGGCC-AGTATATTGGACTTAAAGATGAGGT
* * * *
619938 GCCAATATGCTGACTCAAGGCCGGCTATATTGGATTTAAAGGTGAGGT
1 GCCAATATGCTGATTCAAGGCCAG-TATATTGGACTTAAAGATGAGGT
*
619986 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGATAAAGGT
1 GCCAATATGCTGATTCAAGGCCAG-TATATTGGACTTAAA---GAT-GAGGT
* * *
620038 GCTAATATGCTTATTTAAGGCCAGCTATATT
1 GCCAATATGCTGATTCAAGGCCAG-TATATT
620069 CGTCCCCACA
Statistics
Matches: 281, Mismatches: 29, Indels: 21
0.85 0.09 0.06
Matches are distributed among these distances:
47 46 0.16
48 155 0.55
49 46 0.16
51 2 0.01
52 32 0.11
ACGTcount: A:0.31, C:0.16, G:0.26, T:0.27
Consensus pattern (47 bp):
GCCAATATGCTGATTCAAGGCCAGTATATTGGACTTAAAGATGAGGT
Found at i:619979 original size:95 final size:96
Alignment explanation
Indices: 619698--620068 Score: 476
Period size: 95 Copynumber: 3.8 Consensus size: 96
619688 TGATGAAGCC
* * * ** * * *
619698 GCCAATATGCTGAGTCAAGGCCAGCGATATTGGACTTAAAGACGAAGGTGCCAATGTGTTGAGTC
1 GCCAATATGCTGATTCAAGGCCAACTATATTGGACTTAAAGGTG-AGGTGCCAATATGCTGACTC
* * *
619763 AAGGCCAG-TGACATTGGACTTAAAGATGACGT
65 AAGGCCAGCT-ATATTGGACTTAAAGGTGAGGT
* * *
619795 GCCAATATGCTGATTCAAGGCCAACTATATTGGACTTAAAAGAGAGGTGCCAATATGCTGATTCA
1 GCCAATATGCTGATTCAAGGCCAACTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGACTCA
619860 AGGCCAGCTATATTGGACTTAAAGGTGAGGT
66 AGGCCAGCTATATTGGACTTAAAGGTGAGGT
*
619891 GCCAATATGCTGATTAAAGGCCAACTATATTGGACTT-AAGGTGAGGTGCCAATATGCTGACTCA
1 GCCAATATGCTGATTCAAGGCCAACTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGACTCA
* *
619955 AGGCCGGCTATATTGGATTTAAAGGTGAGGT
66 AGGCCAGCTATATTGGACTTAAAGGTGAGGT
* * *
619986 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGATAAAGGTGCTAATATGCTTA
1 GCCAATATGCTGATTCAAGGCCAACTATATTGGACTTAAAGGTG----AGGTGCCAATATGCTGA
* *
620051 TTTAAGGCCAGCTATATT
62 CTCAAGGCCAGCTATATT
620069 CGTCCCCACA
Statistics
Matches: 243, Mismatches: 25, Indels: 9
0.88 0.09 0.03
Matches are distributed among these distances:
95 88 0.36
96 86 0.35
97 39 0.16
100 30 0.12
ACGTcount: A:0.31, C:0.16, G:0.26, T:0.27
Consensus pattern (96 bp):
GCCAATATGCTGATTCAAGGCCAACTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGACTCA
AGGCCAGCTATATTGGACTTAAAGGTGAGGT
Found at i:619985 original size:143 final size:145
Alignment explanation
Indices: 619698--620068 Score: 487
Period size: 143 Copynumber: 2.6 Consensus size: 145
619688 TGATGAAGCC
* * ** * * * *
619698 GCCAATATGCTGAGTCAAGGCCAGCGATATTGGACTTAAAGACGAAGGTGCCAATGTGTTGAGTC
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAAGGTGCCAATATGCTGATTA
* * *
619763 AAGGCC-AGTGACATTGGACTTAAAGATGACGTGCCAATATGCTGATTCAAGGCCAACTATATTG
66 AAGGCCAACT-ATATTGGACTTAAAGATGACGTGCCAATATGCTGACTCAAGGCCAACTATATTG
619827 GACTTAAAAGAGAGGT
130 GACTTAAAAGAGAGGT
619843 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTG-AGGTGCCAATATGCTGATTA
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAAGGTGCCAATATGCTGATTA
* * **
619907 AAGGCCAACTATATTGGACTT-AAGGTGAGGTGCCAATATGCTGACTCAAGGCCGGCTATATTGG
66 AAGGCCAACTATATTGGACTTAAAGATGACGTGCCAATATGCTGACTCAAGGCCAACTATATTGG
* * *
619971 ATTTAAAGGTGAGGT
131 ACTTAAAAGAGAGGT
* *
619986 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGATAAAGGTGCTAATATGCTTA
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTG---AAGGTGCCAATATGCTGA
* *
620051 TTTAAGGCCAGCTATATT
63 TTAAAGGCCAACTATATT
620069 CGTCCCCACA
Statistics
Matches: 199, Mismatches: 22, Indels: 8
0.87 0.10 0.03
Matches are distributed among these distances:
143 94 0.47
144 32 0.16
145 42 0.21
147 31 0.16
ACGTcount: A:0.31, C:0.16, G:0.26, T:0.27
Consensus pattern (145 bp):
GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAAGGTGCCAATATGCTGATTA
AAGGCCAACTATATTGGACTTAAAGATGACGTGCCAATATGCTGACTCAAGGCCAACTATATTGG
ACTTAAAAGAGAGGT
Found at i:620469 original size:958 final size:959
Alignment explanation
Indices: 618723--621019 Score: 3724
Period size: 958 Copynumber: 2.4 Consensus size: 959
618713 AAGGTGAGGT
* *** ** * * *
618723 GCCAATATGCTGATTCAAGGCCAATTATATTGGACTTAAAGGTG-AGGTGCCAATATGCTGATTC
1 GCCAATATGCTGAGTCAAGGCCAGCGATATTGGACTTAAAGACGAAGGTGCCAATGTGTTGAGTC
* * * *
618787 AAGGCCAGCT-ATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGACAGCTATATTG
66 AAGGCCAG-TGACATTGGACTTAAAGATGAGGTGCCAATATGCTGATTCAAGGCCAACTATATTG
618851 GACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTG
130 GACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTG
* *
618916 CCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAGGTGCCAATATGCTGATTCAA
195 CCAATATGCTGATTCAAGGCCAACTATATTGGACTTAAAGGTGAGGTGCCAATATGC----T---
618981 GGCCAGCTGTATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAG
253 -G--A-C-----TCAAGGCCAGCTATATTGGA-TTAAAGGTGAGGTGCCAATATGCTGATTCAAG
619046 GCCAGCTATATTGGACTTAAAGGTGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTC
308 GCCAGCTATATTGGACTTAAAGGTGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTC
619111 GTCCCCACATATGTTGAATCCTCCACCTACTAGCTAGGCCCTAAATTGTTGAAAATTGGCCCGGA
373 GTCCCCACATATGTTGAATCCTCCACCTACTAGCTAGGCCCTAAATTGTTGAAAATTGGCCCGGA
*
619176 CAAAATGAGGTGTCTACAGCTACCCCTCTTTGGCCATTTCTGAGTATCAAGAACAGGCCAAAGAC
438 CAAAATAAGGTGTCTACAGCTACCCCTCTTTGGCCATTTCTGAGTATCAAGAACAGGCCAAAGAC
* * *
619241 AAATAGACACCATTTTGTCTGCGGCCGCATGTCATGACCTTTGGTGATTTATGCTTCGCCGTGAT
503 AAATAGACACCATTCTGTCTACGGCCGCATGTCATGACCTTTGGTGATTAATGCTTCGCCGTGAT
* * * * *
619306 GAAGAGTGCATTGGCGACGGTTCCGATGGAAAAATGGGTTTGTAGGGTTTGTCCTCCCTACTAGG
568 GAAGAGTGCATCGGCGACAGTTCCGATGGAAAAATGAGTTTCTAGGGTTTCTCCTCCCTACTAGG
* *
619371 TTTTGGAGTTTTCTAAGGCTTGACCTCCTGAGATAGGTGTAGATTGGTGTAGAGTTTGGAACGGA
633 TTTTGGAATTTTCTAAGGCTTGACCTCCTGAGATAGGTGTAGATTGGTGTAGAGTTTAGAACGGA
*
619436 TTGTGGAAGAATATGGTCAGTATTTTGCAATGTGCCACTATGCAGATTCAAGGCCTGCCACACTG
698 TTGTGGAAGAATATGGTCAGTATTTTGCAATGTGCCACTATGCAGATTCAAGGCCTGCCACACTA
* *
619501 GACTTAAAGATGGTGAGGATGAAGAGTGATAAAAGGACCAGTACGTTGATTCACGGCCAACGATA
763 GACTTAAAGATGATGAGGATGAAGAGTGATAAAAAGACCAGTACGTTGATTCACGGCCAACGATA
* *
619566 TTGGGTTTAAAGATGAGAAAAAGGATGTCAATATGCTGACTCACGGTCAGCAACAGTTAGACTTG
828 TTGCGTTTAAAGATGAGAAAAAGGATGTCAATATGCTGACTCACGGTCAGCAACAGTTAAACTTG
*
619631 AAGATGAGAAGAATGCCAATGTGCTGATTCAAGGCCAACGACATTGGGTTTTAAAAATGATGAAG
893 AAGATGAGAAGAATGACAATGTGCTGATTCAAGGCCAACGACATTGGGTTTTAAAAATGATGAAG
619696 CC
958 CC
619698 GCCAATATGCTGAGTCAAGGCCAGCGATATTGGACTTAAAGACGAAGGTGCCAATGTGTTGAGTC
1 GCCAATATGCTGAGTCAAGGCCAGCGATATTGGACTTAAAGACGAAGGTGCCAATGTGTTGAGTC
*
619763 AAGGCCAGTGACATTGGACTTAAAGATGACGTGCCAATATGCTGATTCAAGGCCAACTATATTGG
66 AAGGCCAGTGACATTGGACTTAAAGATGAGGTGCCAATATGCTGATTCAAGGCCAACTATATTGG
* *
619828 ACTTAAAAGAGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGC
131 ACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGC
*
619893 CAATATGCTGATTAAAGGCCAACTATATTGGACTT-AAGGTGAGGTGCCAATATGCTGACTCAAG
196 CAATATGCTGATTCAAGGCCAACTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGACTCAAG
*
619957 GCCGGCTATATTGGATTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACT
261 GCCAGCTATATTGGA-TTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACT
* * *
620022 TAAAGGTGATAAAGGTGCTAATATGCTTATTTAAGGCCAGCTATATTCGTCCCCACATATGTTGA
325 TAAAGGTGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTCGTCCCCACATATGTTGA
620087 ATCCTCCACCTACTAGCTAGGCCCTAAATTGTTGAAAATTGGCCCGGACAAAATAAGGTGTCTAC
390 ATCCTCCACCTACTAGCTAGGCCCTAAATTGTTGAAAATTGGCCCGGACAAAATAAGGTGTCTAC
* *
620152 AGCT-GCCCTCTTTGG-CAGTTTCTGAGTATCAGGAACAGGCCAAAGACAAATAGACACCATTCT
455 AGCTACCCCTCTTTGGCCA-TTTCTGAGTATCAAGAACAGGCCAAAGACAAATAGACACCATTCT
* *
620215 GTCTACGGCTGCATGTCATGACCTTTGGTGATTAATGCTTCGCCGTGATGAAGAGTGCATCGGTG
519 GTCTACGGCCGCATGTCATGACCTTTGGTGATTAATGCTTCGCCGTGATGAAGAGTGCATCGGCG
* *
620280 ACAGTTTCGATGGAAAAATGAGTTTCTAGGGTTTCTCTTCCCTACTAGGTTTTGGAATTTTCTAA
584 ACAGTTCCGATGGAAAAATGAGTTTCTAGGGTTTCTCCTCCCTACTAGGTTTTGGAATTTTCTAA
*
620345 GGCTTGACCTCCTTAGATAGGTGTAGATTGGTGTAGAGTTTAGAACGGATTGTGGAAGAATATGG
649 GGCTTGACCTCCTGAGATAGGTGTAGATTGGTGTAGAGTTTAGAACGGATTGTGGAAGAATATGG
*
620410 TCAGTATTTTGCAATGTGCCACTGTGCAGATTCAAGGCCTGCCACACTAGACTTAAAGATGATGA
714 TCAGTATTTTGCAATGTGCCACTATGCAGATTCAAGGCCTGCCACACTAGACTTAAAGATGATGA
*
620475 GGATGAAGAGTGATAAAAAGACCAGTACGTTGATTCACGGGCAACGATATTGCGTTTAAAGATGA
779 GGATGAAGAGTGATAAAAAGACCAGTACGTTGATTCACGGCCAACGATATTGCGTTTAAAGATGA
620540 GAAAAAGGATGTCAATATGCTGACTCACGGTCAGCAACAGTTAAACTTGAAGATGAGAAGAATGA
844 GAAAAAGGATGTCAATATGCTGACTCACGGTCAGCAACAGTTAAACTTGAAGATGAGAAGAATGA
* *
620605 CAATGTGCTGATTCAAGGCCAACGGCATTGGGTTTTAAAAATGATGAAGGC
909 CAATGTGCTGATTCAAGGCCAACGACATTGGGTTTTAAAAATGATGAAGCC
*
620656 GCCAATATGTTGAGTCAAGGCCAGCGATATTGGACTTAAAGACGAAGGTGCCAATGTGTTGAGTC
1 GCCAATATGCTGAGTCAAGGCCAGCGATATTGGACTTAAAGACGAAGGTGCCAATGTGTTGAGTC
* * * *
620721 AAGGCCGGCGACATTGGACTTAAAGATGAGGTG-CAATATGTTGATTCAAGGCCAACTACATTGG
66 AAGGCCAGTGACATTGGACTTAAAGATGAGGTGCCAATATGCTGATTCAAGGCCAACTATATTGG
*
620785 ACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGACCAGCTATATTGGGACTTAAAGGTGAGGTG
131 ACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATT-GGACTTAAAGGTGAGGTG
* *
620850 CCAATATGCTGATTCAAGGCCAATTATATTGGACTTAAAGGTGAGGT-CCAATATGCTGATTCAA
195 CCAATATGCTGATTCAAGGCCAACTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGACTCAA
* *
620914 -GCCAGCTATA-TGGACT-AAGGTGAGGTGGCCAATAT-CTGGATTCAAGGCGAGCTATATTGGA
260 GGCCAGCTATATTGGATTAAAGGTGAGGT-GCCAATATGCT-GATTCAAGGCCAGCTATATTGGA
*
620975 CTTAAAGGTG----AGGTGCCAATATGCTGATTCAAGGACAGCTATATT
323 CTTAAAGGTGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATT
621020 GGACTTAAAG
Statistics
Matches: 1244, Mismatches: 71, Indels: 38
0.92 0.05 0.03
Matches are distributed among these distances:
951 31 0.02
954 12 0.01
955 41 0.03
956 4 0.00
957 83 0.07
958 632 0.51
959 208 0.17
964 1 0.00
965 1 0.00
967 1 0.00
971 1 0.00
975 58 0.05
976 171 0.14
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.27
Consensus pattern (959 bp):
GCCAATATGCTGAGTCAAGGCCAGCGATATTGGACTTAAAGACGAAGGTGCCAATGTGTTGAGTC
AAGGCCAGTGACATTGGACTTAAAGATGAGGTGCCAATATGCTGATTCAAGGCCAACTATATTGG
ACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGC
CAATATGCTGATTCAAGGCCAACTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGACTCAAG
GCCAGCTATATTGGATTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
AAAGGTGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTCGTCCCCACATATGTTGAA
TCCTCCACCTACTAGCTAGGCCCTAAATTGTTGAAAATTGGCCCGGACAAAATAAGGTGTCTACA
GCTACCCCTCTTTGGCCATTTCTGAGTATCAAGAACAGGCCAAAGACAAATAGACACCATTCTGT
CTACGGCCGCATGTCATGACCTTTGGTGATTAATGCTTCGCCGTGATGAAGAGTGCATCGGCGAC
AGTTCCGATGGAAAAATGAGTTTCTAGGGTTTCTCCTCCCTACTAGGTTTTGGAATTTTCTAAGG
CTTGACCTCCTGAGATAGGTGTAGATTGGTGTAGAGTTTAGAACGGATTGTGGAAGAATATGGTC
AGTATTTTGCAATGTGCCACTATGCAGATTCAAGGCCTGCCACACTAGACTTAAAGATGATGAGG
ATGAAGAGTGATAAAAAGACCAGTACGTTGATTCACGGCCAACGATATTGCGTTTAAAGATGAGA
AAAAGGATGTCAATATGCTGACTCACGGTCAGCAACAGTTAAACTTGAAGATGAGAAGAATGACA
ATGTGCTGATTCAAGGCCAACGACATTGGGTTTTAAAAATGATGAAGCC
Found at i:620832 original size:48 final size:48
Alignment explanation
Indices: 620656--621166 Score: 664
Period size: 49 Copynumber: 10.6 Consensus size: 48
620646 TGATGAAGGC
* * * **
620656 GCCAATATGTTGAGTCAAGGCCAGCGATATTGGACTTAAAGACGAAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTG-AGGT
* * * * * * *
620705 GCCAATGTGTTGAGTCAAGGCCGGCGACATTGGACTTAAAGATGAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGT
* * *
620753 G-CAATATGTTGATTCAAGGCCAACTACATTGGACTTAAAGGTGAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGT
*
620800 GCCAATATGCTGATTCAAGACCAGCTATATTGGGACTTAAAGGTGAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATT-GGACTTAAAGGTGAGGT
**
620849 GCCAATATGCTGATTCAAGGCCAATTATATTGGACTTAAAGGTGAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGT
620897 -CCAATATGCTGATTCAA-GCCAGCTATA-TGGAC-T-AAGGTGAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGT
*
620940 GGCCAATAT-CTGGATTCAAGGCGAGCTATATTGGACTTAAAGGTGAGGT
1 -GCCAATATGCT-GATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGT
*
620989 GCCAATATGCTGATTCAAGGACAGCTATATTGGACTTAAAGGTGAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGT
*
621037 GCCAATATGCTGATTCAAAGGACAGCTATATTGGACTT-AAGGTGAGGT
1 GCCAATATGCTGATTC-AAGGCCAGCTATATTGGACTTAAAGGTGAGGT
*
621085 -CCAATATGCTGATTCAAGGCTAGCTATATTGGA-TATAAAGGTGATAAAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACT-TAAAGGTG----AGGT
621136 GCCAATATGCTGATTCAAGGCCAGCTATATT
1 GCCAATATGCTGATTCAAGGCCAGCTATATT
621167 TGTCCCCACA
Statistics
Matches: 419, Mismatches: 25, Indels: 33
0.88 0.05 0.07
Matches are distributed among these distances:
43 10 0.02
44 3 0.01
45 20 0.05
46 34 0.08
47 84 0.20
48 117 0.28
49 118 0.28
51 4 0.01
52 29 0.07
ACGTcount: A:0.31, C:0.16, G:0.27, T:0.27
Consensus pattern (48 bp):
GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGT
Found at i:620991 original size:189 final size:189
Alignment explanation
Indices: 620656--621166 Score: 656
Period size: 189 Copynumber: 2.7 Consensus size: 189
620646 TGATGAAGGC
* * * ** * * *
620656 GCCAATATGTTGAGTCAAGGCCAGCGATATTGGACTTAAAGACGAAGGTGCCAATGTGTTGAGTC
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTG-AGGT-CCAATATGCTGATTC
* * * * * * *
620721 AAGGCCGGCGACATTGGACTTAAAGATGAGGTG-CAATATGTTGATTCAAGGCCAACTACATTGG
64 AAGGCCAGCTATATTGGAC-TAAAGGTGAGGTGCCAATAT-CTGATTCAAGGCCAGCTATATTGG
620785 ACTTAAAGGTGAGGTGCCAATATGCTGATTCAA-GACCAGCTATATTGGGACTTAAAGGTGAGGT
127 ACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGA-CAGCTATATT-GGACTTAAAGGTGAGGT
**
620849 GCCAATATGCTGATTCAAGGCCAATTATATTGGACTTAAAGGTGAGGTCCAATATGCTGATTCAA
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTCCAATATGCTGATTCAA
*
620914 -GCCAGCTATA-TGGACT-AAGGTGAGGTGGCCAATATCTGGATTCAAGGCGAGCTATATTGGAC
66 GGCCAGCTATATTGGACTAAAGGTGAGGT-GCCAATATCT-GATTCAAGGCCAGCTATATTGGAC
620976 TTAAAGGTGAGGTGCCAATATGCTGATTCAAGGACAGCTATATTGGACTTAAAGGTGAGGT
129 TTAAAGGTGAGGTGCCAATATGCTGATTCAAGGACAGCTATATTGGACTTAAAGGTGAGGT
*
621037 GCCAATATGCTGATTCAAAGGACAGCTATATTGGACTT-AAGGTGAGGTCCAATATGCTGATTCA
1 GCCAATATGCTGATTC-AAGGCCAGCTATATTGGACTTAAAGGTGAGGTCCAATATGCTGATTCA
* *
621101 AGGCTAGCTATATTGGATATAAAGGTGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATAT
65 AGGCCAGCTATATTGGA-CTAAAGGTG----AGGTGCCAATAT-CTGATTCAAGGCCAGCTATAT
621166 T
124 T
621167 TGTCCCCACA
Statistics
Matches: 280, Mismatches: 24, Indels: 26
0.85 0.07 0.08
Matches are distributed among these distances:
187 9 0.03
188 63 0.22
189 100 0.36
190 13 0.05
191 15 0.05
192 10 0.04
193 37 0.13
195 27 0.10
196 6 0.02
ACGTcount: A:0.31, C:0.16, G:0.27, T:0.27
Consensus pattern (189 bp):
GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTCCAATATGCTGATTCAA
GGCCAGCTATATTGGACTAAAGGTGAGGTGCCAATATCTGATTCAAGGCCAGCTATATTGGACTT
AAAGGTGAGGTGCCAATATGCTGATTCAAGGACAGCTATATTGGACTTAAAGGTGAGGT
Found at i:621871 original size:48 final size:48
Alignment explanation
Indices: 621755--622175 Score: 565
Period size: 48 Copynumber: 8.6 Consensus size: 48
621745 TGATGAAGGC
* * * **
621755 GCCAATATGTTGAGTCAAGGCCTAGCGATATTGGACTTAAAGACGAAGGT
1 GCCAATATGCTGATTCAAGGCC-AGCTATATTGGACTTAAAGGTG-AGGT
* * * * * * *
621805 GCCAATGTGTTGAGTCAAGGCCGGCGACATTGGACTTAAAGATGAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGT
* * * * *
621853 GCAAATATGTTGATTCAAGGCCAACTACATTGGTCTTAAAGGTGAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGT
*
621901 GCCAATATGCTGATTCAAGACCAGCTATATTGGACTTAAAGGTGAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGT
**
621949 GCCAATATGCTGATTCAAGGCCAATTATATTGGACTTAAAGGTGAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGT
*
621997 GCCAATATGCTGATTCAAGGCGAGCTATATTGGACTTAAAGGTGAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGT
*
622045 GCCAATATGCTGATTCAAGGACAGCTATATTGGACTTAAAGGTGAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGT
*
622093 GCCAATATGCTGATTCAAGGCTAGCTATATTGGA-TATAAAGGTGATAAAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACT-TAAAGGTG----AGGT
622145 GCCAATATGCTGATTCAAGGCCAGCTATATT
1 GCCAATATGCTGATTCAAGGCCAGCTATATT
622176 TGTCCCCACA
Statistics
Matches: 337, Mismatches: 29, Indels: 8
0.90 0.08 0.02
Matches are distributed among these distances:
47 1 0.00
48 262 0.78
49 19 0.06
50 21 0.06
52 34 0.10
ACGTcount: A:0.31, C:0.15, G:0.27, T:0.27
Consensus pattern (48 bp):
GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGT
Found at i:622016 original size:26 final size:26
Alignment explanation
Indices: 621987--622112 Score: 69
Period size: 26 Copynumber: 5.2 Consensus size: 26
621977 ATTGGACTTA
621987 AAGGTGAGGTGCCAATATGCTGATTC
1 AAGGTGAGGTGCCAATATGCTGATTC
* * *
622013 AAGGCGA---G-CTATAT--TGGACTTA
1 AAGGTGAGGTGCCAATATGCT-GA-TTC
622035 AAGGTGAGGTGCCAATATGCTGATTC
1 AAGGTGAGGTGCCAATATGCTGATTC
** * *
622061 AA-G-GA-CAG-CTATAT--TGGACTTA
1 AAGGTGAGGTGCCAATATGCT-GA-TTC
622083 AAGGTGAGGTGCCAATATGCTGATTC
1 AAGGTGAGGTGCCAATATGCTGATTC
622109 AAGG
1 AAGG
622113 CTAGCTATAT
Statistics
Matches: 70, Mismatches: 14, Indels: 32
0.60 0.12 0.28
Matches are distributed among these distances:
20 2 0.03
21 4 0.06
22 22 0.31
23 3 0.04
24 4 0.06
25 3 0.04
26 26 0.37
27 4 0.06
28 2 0.03
ACGTcount: A:0.30, C:0.14, G:0.29, T:0.26
Consensus pattern (26 bp):
AAGGTGAGGTGCCAATATGCTGATTC
Found at i:622880 original size:48 final size:48
Alignment explanation
Indices: 622764--623183 Score: 563
Period size: 48 Copynumber: 8.6 Consensus size: 48
622754 TGATGAAGGC
* * * * **
622764 GCCAATATGTTGAGTCAAGGCCAGCGATATTGGAGTTAAAGACGAAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTG-AGGT
* * * * * * *
622813 GCCAATGTGTTGAGTCAAGGCCGGCGACATTGGACTTAAAGATGAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGT
* * * * *
622861 GCAAATATGTTGATTCAAGGCCAACCACATTGGACTTAAAGGTGAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGT
*
622909 GCCAATATGCTGATTCAAGACCAGCTATATTGGACTTAAAGGTGAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGT
**
622957 GCCAATATGCTGATTCAAGGCCAATTATATTGGACTTAAAGGTGAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGT
*
623005 GCCAATATGCTGATTCAAGGCGAGCTATATTGGACTTAAAGGTGAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGT
*
623053 GCCAATATGCTGATTCAAGGACAGCTATATTGGACTTAAAGGTGAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGT
*
623101 GCCAATATGCTGATTCAAGGCTAGCTATATTGGA-TATAAAGGTGATAAAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACT-TAAAGGTG----AGGT
623153 GCCAATATGCTGATTCAAGGCCAGCTATATT
1 GCCAATATGCTGATTCAAGGCCAGCTATATT
623184 TGTCCCCACA
Statistics
Matches: 337, Mismatches: 29, Indels: 7
0.90 0.08 0.02
Matches are distributed among these distances:
47 1 0.00
48 263 0.78
49 39 0.12
52 34 0.10
ACGTcount: A:0.31, C:0.15, G:0.27, T:0.26
Consensus pattern (48 bp):
GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGT
Found at i:623024 original size:26 final size:26
Alignment explanation
Indices: 622995--623120 Score: 69
Period size: 26 Copynumber: 5.2 Consensus size: 26
622985 ATTGGACTTA
622995 AAGGTGAGGTGCCAATATGCTGATTC
1 AAGGTGAGGTGCCAATATGCTGATTC
* * *
623021 AAGGCGA---G-CTATAT--TGGACTTA
1 AAGGTGAGGTGCCAATATGCT-GA-TTC
623043 AAGGTGAGGTGCCAATATGCTGATTC
1 AAGGTGAGGTGCCAATATGCTGATTC
** * *
623069 AA-G-GA-CAG-CTATAT--TGGACTTA
1 AAGGTGAGGTGCCAATATGCT-GA-TTC
623091 AAGGTGAGGTGCCAATATGCTGATTC
1 AAGGTGAGGTGCCAATATGCTGATTC
623117 AAGG
1 AAGG
623121 CTAGCTATAT
Statistics
Matches: 70, Mismatches: 14, Indels: 32
0.60 0.12 0.28
Matches are distributed among these distances:
20 2 0.03
21 4 0.06
22 22 0.31
23 3 0.04
24 4 0.06
25 3 0.04
26 26 0.37
27 4 0.06
28 2 0.03
ACGTcount: A:0.30, C:0.14, G:0.29, T:0.26
Consensus pattern (26 bp):
AAGGTGAGGTGCCAATATGCTGATTC
Found at i:623890 original size:48 final size:48
Alignment explanation
Indices: 623763--624095 Score: 396
Period size: 48 Copynumber: 6.8 Consensus size: 48
623753 TTTTAAAAAT
* * * * *
623763 GATGAAGGCGCCAATATGTTGAGTCAAGGCCAACGATATTGGACTTAAA
1 GATG-AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
** * * * * *
623812 GACCAAGGTGCCAATGTGTTGAGTCAAGGCCAGCGACATTGGACTTAAA
1 GA-TGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
* * * *
623861 GATGAGGTGCGATTATGCTGATTCAAGGCCAACTACATTGGACTTAAA
1 GATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
* *
623909 GGTGAGGTGCCAATATGCTGATTCAAGACCAGCTATATTGGACTTAAA
1 GATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
* * *
623957 GGTGAGGTTCCAATATGCTGATTCAAGGCCAACTATATTGGACTTAAA
1 GATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
* *
624005 GGTGAGGTGCCAATATGCTGATTCAAGGCTAGCTATATTGGACTTAAA
1 GATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
*
624053 GGTGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATT
1 ---GAT-GAGGTGCCAATATGCTGATTCAAGGCCAGCTATATT
624096 CGTCCCCACA
Statistics
Matches: 249, Mismatches: 30, Indels: 7
0.87 0.10 0.02
Matches are distributed among these distances:
48 169 0.68
49 44 0.18
51 2 0.01
52 34 0.14
ACGTcount: A:0.31, C:0.17, G:0.26, T:0.26
Consensus pattern (48 bp):
GATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
Found at i:624667 original size:912 final size:917
Alignment explanation
Indices: 622864--635388 Score: 10631
Period size: 912 Copynumber: 13.4 Consensus size: 917
622854 ATGAGGTGCA
* * * ** * * *
622864 AATATGTTGATTCAAGGCCAACCACATTGGACTTAAAGGTG-AGGTGCCAATATGCTGATTCAAG
1 AATATGTTGATTCAAGGCCAGCGATATTGGACTTAAAGACGAAGGTGCCAATGTGTTGAGTCAAG
* * * * * *
622928 ACCAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAATTATATTGGACT
66 GCCAGCGACATTGGACTTAAAGATGAGGTGCGAATATGCTGATTCAAGGCCAACTATATTGGACT
*
622993 TAAAGGTGAGGTGCCAATATGCTGATTCAAGGCGAGCTATATTGGACTTAAAGGTGAGGTGCCAA
131 TAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAA
*
623058 TATGCTGATTCAAGGACAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGG-C
196 TATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGAC
*
623122 TAGCTATATTGGA-TATAAAGGTGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTTG
261 -AGCTATATTGGACT-TAAAGGTG-T--AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGG
* * * * * * * *
623186 -TCCCCACATATGTCAAATCCT-CCACCTA-CT-A-GCTAGGCCCTAAATTGTTGAAAATTGGCC
321 AT----ATAAAGGTGAAAACCTGCCA-ATAGCTGATGCAAGG-CC---A--GCT-AAAATTGGCC
* * * * **
623246 TGGACAAAATGAGGTGTCTACA-GCTGCC-CCT-CT-TTGGCCGT-TT-CTGAGTATCAGGAACA
374 ----CAAAAT-A--TGTC-AAATCCT-CCACCTACTATAGGCCCTATTGCTGAAAAT-AGG-ACA
* * * * * *
623305 GG-CCAAA-GA-CAAATAGA-C-ACCAT-TTT-G-TCT-AC-GG-C-CG-C-ATGTC-AT-G-AC
428 GGACAAAATGAGCAAATACAGCGACCATCTTTCGTTCTGTCAGGACAGGCCAAAGACAATAGAAC
*
623353 C-TTTGGTGAT-TAATGCTTCGCCGTGATGAATG-GTGCATCGGTGTCGGTTTCGATGGAAAAAT
493 CTTTTGGTGATGTAATGCTTCGCCGTGATGAATGAGTGCATCGGTGACGGTTTCGATGGAAAAAT
* *
623415 GAGTTTGTAGGGTTTGTCTTCCCTACTAGGTTTTGGAATTTTCTAAGGCTTGACCTCCTTAGATA
558 GAGTTTCTAGGGTTTCTCTTCCCTACTAGGTTTTGGAATTTTCTAAGGCTTGACCTCCTTAGATA
*
623480 GGTGTACATTGGTGTAGAGTTTGGAACGGATTGTGGAAGAATACGGTCAGTTTTTTGCAATGTGC
623 GGTGTACATTGGTGTAGAGTTTGGAACGGATTGTGGAAGAATACGGTCAGTATTTTGCAATGTGC
* *
623545 CACTGTGCAGATTCAAGGCCTGCCACACTTGACTTAAAGATGATGAGGATGAAGAGTGATAACAG
688 CACTGTGCAGATTCAAGGCCTGCCACACTAGACTTAAAGATGATGAGGATGAAGAGTGATAAAAG
*
623610 GACTAGTACGTTGATTCACGGCCAACGATATTGGGTTTAAAGATGAGAAAAAGGATGTCAATATG
753 GACCAGTACGTTGATTCACGGCCAACGATATTGGGTTTAAAGATGAGAAAAAGGATGTCAATATG
* *
623675 CTGATTCGCGGTCAGCAACAGTTAGACTTGAAGATGAGAAGAATGCCAATGTTCTCATTCAAGGC
818 CTGATTCACGGTCAGCAACAGTTAGACTTGAAGATGAGAAGAATGCCAATGTGCTCATTCAAGGC
623740 CAACGGCATTGGGTTTTAAAAATGATGAAGGCGCC
883 CAACGGCATTGGGTTTTAAAAATGATGAAGGCGCC
* * *
623775 AATATGTTGAGTCAAGGCCAACGATATTGGACTTAAAGACCAAGGTGCCAATGTGTTGAGTCAAG
1 AATATGTTGATTCAAGGCCAGCGATATTGGACTTAAAGACGAAGGTGCCAATGTGTTGAGTCAAG
* *
623840 GCCAGCGACATTGGACTTAAAGATGAGGTGCGATTATGCTGATTCAAGGCCAACTACATTGGACT
66 GCCAGCGACATTGGACTTAAAGATGAGGTGCGAATATGCTGATTCAAGGCCAACTATATTGGACT
* *
623905 TAAAGGTGAGGTGCCAATATGCTGATTCAAGACCAGCTATATTGGACTTAAAGGTGAGGTTCCAA
131 TAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAA
*
623970 TATGCTGATTCAAGGCCAACTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGG-C
196 TATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGAC
*
624034 TAGCTATATTGGACTTAAAGGTGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTCG-
261 -AGCTATATTGGACTTAAAGGTG-T--AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGA
* * * * * * *
624098 TCCCCACATATGTCG-AATCCT-CCACCTA-CT-A-GCTAGGCCCTAAATTGTTGAAAATTGGCC
322 T----ATAAAGGT-GAAAACCTGCCA-ATAGCTGATGCAAGG-CC---A--GCT-AAAATTGGCC
* *** * * **
624158 TGGACAAAATGAGGTGTCTACGGCTACC-CCT-CT-TTGGCCGT-TT-CTGAGTATCAGGAACAG
374 ----CAAAAT-A--TGTCAAATCCT-CCACCTACTATAGGCCCTATTGCTGAAAAT-AGG-ACAG
* * * * *
624218 G-CCAAA-GA-CAAATAGA-C-ACCAT-TTT-G-TCTG-C-GG-C-CG-C-ATGTC-AT-G-ACC
429 GACAAAATGAGCAAATACAGCGACCATCTTTCGTTCTGTCAGGACAGGCCAAAGACAATAGAACC
624266 -TTTGGTGAT-TAATGCTTCGCCGTGATGAA-GAGTGCATCGGTGACGGTTTCGATGGAAAAATG
494 TTTTGGTGATGTAATGCTTCGCCGTGATGAATGAGTGCATCGGTGACGGTTTCGATGGAAAAATG
624328 AGTTTCTAGGGTTTCTCTTCCCTACTAGGTTTTGGAATTTTCTAAGGCTTGACCTCCTTAGATAG
559 AGTTTCTAGGGTTTCTCTTCCCTACTAGGTTTTGGAATTTTCTAAGGCTTGACCTCCTTAGATAG
* * *
624393 GTGTAGATTGGTGTAGAGTTTGTAACGGATTGTGGAAGAATACGGTCAGTATTTTGCAATGAGCC
624 GTGTACATTGGTGTAGAGTTTGGAACGGATTGTGGAAGAATACGGTCAGTATTTTGCAATGTGCC
* *
624458 ACTGTGCAGATTCAAGGGCTGCCACACTAGACTTAAAGATGATGAGGATGAAGTGTGATAAAAGG
689 ACTGTGCAGATTCAAGGCCTGCCACACTAGACTTAAAGATGATGAGGATGAAGAGTGATAAAAGG
*
624523 ACCAGTTCGTTGATTCACGGCCAACGATATTGGGTTTAAAGATGAGAAAAAGGATGTCAATATGC
754 ACCAGTACGTTGATTCACGGCCAACGATATTGGGTTTAAAGATGAGAAAAAGGATGTCAATATGC
* * *
624588 TGATTCACTGTCAGCAACAGTTAGACTTGAAGATGAGAAGAATGCTAATGTGCTGATTCAAGGCC
819 TGATTCACGGTCAGCAACAGTTAGACTTGAAGATGAGAAGAATGCCAATGTGCTCATTCAAGGCC
624653 AACGGCATTGGGTTTTAAAAATGATGAAGGCGCC
884 AACGGCATTGGGTTTTAAAAATGATGAAGGCGCC
* *
624687 AATATGCTGATTCAAGGCCAGCGATATTGGACCTAAAGACGAAGGTGCCAATGTGTTGAGTCAAG
1 AATATGTTGATTCAAGGCCAGCGATATTGGACTTAAAGACGAAGGTGCCAATGTGTTGAGTCAAG
* *
624752 GCCAGCGACATTGGACTTAAAGATGAGGTGCGAATATGCTGATTCAAGGCCAACTACATTCGACT
66 GCCAGCGACATTGGACTTAAAGATGAGGTGCGAATATGCTGATTCAAGGCCAACTATATTGGACT
* * * *
624817 TAAAGGTGAGGGGCCAATATGTTGATTCAAGACCAGCTATATTAGACTTAAAGGTGAGGTGCCAA
131 TAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAA
* * *
624882 TATGCTGATTCAAGGCTAACTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCC
196 TATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGAC
* * *
624947 TGCTATATTTGACTTAAAGGTGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTCG-T
261 AGCTATATTGGACTTAAAGGTG-T--AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGAT
* * * * *
625011 CCCCA-AATATGTCG-AATCCT-CCACCTA-CT-A-GCTAGGCCCTAAATTGTTAAAAATTGGCC
323 ----ATAA-AGGT-GAAAACCTGCCA-ATAGCTGATGCAAGG-CC---A--GCT-AAAATTGG-C
* * * ** **
625070 CGGACAAAATGAGGTGTCTACA-GCTGCC-CCT-CT-TTGGCAGT-TT-CTGAGTATCAGGAACA
373 C---CAAAAT-A--TGTC-AAATCCT-CCACCTACTATAGGCCCTATTGCTGAAAAT-AGG-ACA
* * * * *
625129 GG-CCAAA-GA-CAAATAGA-C-ACCAT-TTT-G-TCTG-C-GG-C-TG-C-ATGTC-AT-GAA-
428 GGACAAAATGAGCAAATACAGCGACCATCTTTCGTTCTGTCAGGACAGGCCAAAGACAATAGAAC
625177 C-TTTGGTGAT-TAATGCTTCGCCGTGATGAA-GAGTGCATCGGTGACGGTTTCGATGGAAAAAT
493 CTTTTGGTGATGTAATGCTTCGCCGTGATGAATGAGTGCATCGGTGACGGTTTCGATGGAAAAAT
* *
625239 GAGTTTGTAGGGTTTGTCTTCCCTACTAGGTTTTGGAATTTTCTAAGGCTTGACCTCCTTAGATA
558 GAGTTTCTAGGGTTTCTCTTCCCTACTAGGTTTTGGAATTTTCTAAGGCTTGACCTCCTTAGATA
*
625304 GGTGTAGATTGGTGTAGAGTTTGGAACGGATTGTGGAAGAATACGGTCAGTATTTTGCAATGTGC
623 GGTGTACATTGGTGTAGAGTTTGGAACGGATTGTGGAAGAATACGGTCAGTATTTTGCAATGTGC
* *
625369 CACTGTGCAGATTCAAGGCCTGCCACACTAGACCTAATGATGATGAGGATGAAGAGTGATAAAAG
688 CACTGTGCAGATTCAAGGCCTGCCACACTAGACTTAAAGATGATGAGGATGAAGAGTGATAAAAG
625434 GACCAGTACGTTGATTCACGGCCAACGATATTGGGTTTAAAGATGAGAAAAAGGATGTCAATATG
753 GACCAGTACGTTGATTCACGGCCAACGATATTGGGTTTAAAGATGAGAAAAAGGATGTCAATATG
* * *
625499 CTGATTCACGGAAGGTGCCAATGTGTTGAGTCAAGGCCAGCGACATTGGTCTTAAAGATGAG--G
818 CTGATTCAC----GGT--C---------AG-CAA---CA--G---TTAGACTTGAAGATGAGAAG
* * * ** ** * *
625562 --TGCGAATATGCTGATTCAAGGCCAACTACATT-GGACTT--AAA-GGTG-AGGTGCC
859 AATGCCAATGTGCTCATTCAAGGCCAACGGCATTGGGTTTTAAAAATGATGAAGGCGCC
* * ** * * *
625614 AATATGTTGATTCAAGACCAGCTATATTGGACTTAAAGGTG-AGGTGCCAATATGCTGATTCAAG
1 AATATGTTGATTCAAGGCCAGCGATATTGGACTTAAAGACGAAGGTGCCAATGTGTTGAGTCAAG
* * * * * * *
625678 GCCAACTATATTGGACTCAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACT
66 GCCAGCGACATTGGACTTAAAGATGAGGTGCGAATATGCTGATTCAAGGCCAACTATATTGGACT
625743 TAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAA
131 TAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAA
*
625808 TATGCTGATTCAAGGCGAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGAC
196 TATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGAC
*
625873 AGCTATATTGGACTTAAAGGTG-AGGTGCCAATATGCTGATTCAAGGCTAGCTATATTGGATATA
261 AGCTATATTGGACTTAAAGGTGTAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGATATA
** * * * * * *
625937 AAGGTGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTTGTCCCCACATATGTCAAAT
326 AAGGTGA-AAACCTGCCAATA-GCTGATGCAAGGCCAGCTAAAATTGGCCCAAAATATGTCAAAT
* * * * ****
626002 CCTCCACCTACTAGCTAGGCCCTAAATTGTTGAAAATTGGCCTGGACAAAATGAGGTGTCTACAG
389 CCTCCACCTACTA--TAGGCCCT--ATTGCTGAAAATAGGACAGGACAAAATGA-GCAAATACAG
* *
626067 CTGCCCCTCTTTGGCCGTTTCTGAGTATCAGGAACAGGCCAAAGACAAATAGACACCATTTTGTC
449 C-GACCATCTTT---CG-TTCT--G--TCAGG-ACAGGCCAAAGAC-AATAGA-ACC---TT-T-
*
626132 TACGGCCGCATGTCATGACCTTTGGTGATTAATGCTTCGCCTTGATGAA-GAGTGCATCGGTGAC
497 T------G---G---TGA-------TG--TAATGCTTCGCCGTGATGAATGAGTGCATCGGTGAC
*
626196 GGTTTCGATGGAAAAATGAGTTTCTAGGGTTTCTCTTCCCGACTAGGTTTTGGAATTTTCTAAGG
541 GGTTTCGATGGAAAAATGAGTTTCTAGGGTTTCTCTTCCCTACTAGGTTTTGGAATTTTCTAAGG
* * *
626261 CTTGACCTCCTTAGATAGGTGTAGATTGGTGTAGAGTTTAGAACGGATTGTGGAAGAATATGGTC
606 CTTGACCTCCTTAGATAGGTGTACATTGGTGTAGAGTTTGGAACGGATTGTGGAAGAATACGGTC
*
626326 AGTATTTTGCAATGTGCCACTGTGCAGATTCAAGGTCTGCCACACTAGACTTAAAGATGATGAGG
671 AGTATTTTGCAATGTGCCACTGTGCAGATTCAAGGCCTGCCACACTAGACTTAAAGATGATGAGG
* * *
626391 ATGAAGAGTGATAAAAAGACCAGTACGTTGATTCACGGCCAACAATATTGCGTTTAAAGATGAGA
736 ATGAAGAGTGATAAAAGGACCAGTACGTTGATTCACGGCCAACGATATTGGGTTTAAAGATGAGA
* * *
626456 AAAAGGATGTCAATATGCTGATTCACTGTCAGCAATAGTTAGACTTGAAGATGAGAAGAATGCTA
801 AAAAGGATGTCAATATGCTGATTCACGGTCAGCAACAGTTAGACTTGAAGATGAGAAGAATGCCA
*
626521 ATGTGCTGATTCAAGGCCAACGGCATTGGGTTTTAAAAATGATGAAGGCGCC
866 ATGTGCTCATTCAAGGCCAACGGCATTGGGTTTTAAAAATGATGAAGGCGCC
* *
626573 AATATGCTGATTCAAGGCCAGCGATATTGGACCTAAAGACGAAGGTGCCAATGTGTTGAGTCAAG
1 AATATGTTGATTCAAGGCCAGCGATATTGGACTTAAAGACGAAGGTGCCAATGTGTTGAGTCAAG
* *
626638 GCCAGCGACATTGGACTTAAAGATGAGGTGCGAATATGCTGATTCAAGACCAGCTATATTGGACT
66 GCCAGCGACATTGGACTTAAAGATGAGGTGCGAATATGCTGATTCAAGGCCAACTATATTGGACT
**
626703 TAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAATTATATTGGACTTAAAGGTGAGGTGCCAA
131 TAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAA
*
626768 TATGCTGATTCAAGGCGAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGAC
196 TATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGAC
*
626833 AGCTATATTGGACTTAAAGGTG-AGGTGCCAATATGCTGATTCAAGGCTAGCTATATTGGATATA
261 AGCTATATTGGACTTAAAGGTGTAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGATATA
** * * * * * *
626897 AAGGTGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTTGTCCCCACATATGTCAAAT
326 AAGGTGA-AAACCTGCCAATA-GCTGATGCAAGGCCAGCTAAAATTGGCCCAAAATATGTCAAAT
* * * * ****
626962 CCTCCACCTACTAGCTAGGCCCTAAATTGTTGAAAATTGGCCTGGACAAAATGAGGTGTCTACAG
389 CCTCCACCTACTA--TAGGCCCT--ATTGCTGAAAATAGGACAGGACAAAATGA-GCAAATACAG
* *
627027 CTGCCCCTCTTTGGCCGTTTCTGATTATCAGGAACAGGCCAAAGACAAATAGACACCATTTTGTC
449 C-GACCATCTTT---CG-TTCTG----TCAGG-ACAGGCCAAAGAC-AATAGA-ACC---TT-T-
*
627092 TACGGCCGCATGTCATGACCTTTGGTGATTAATGCTTCGCCGTGATGAATG-GTGCATCGGTGTC
497 T------G---G---TGA-------TG--TAATGCTTCGCCGTGATGAATGAGTGCATCGGTGAC
* *
627156 GGTTTCGATGGAAAAATGAGTTTGTAGGGTTTGTCTTCCCTACTAGGTTTTGGAATTTTCTAAGG
541 GGTTTCGATGGAAAAATGAGTTTCTAGGGTTTCTCTTCCCTACTAGGTTTTGGAATTTTCTAAGG
627221 CTTGACCTCCTTAGATAGGTGTACATTGGTGTAGAGTTTGGAACGGATTGTGGAAGAATACGGTC
606 CTTGACCTCCTTAGATAGGTGTACATTGGTGTAGAGTTTGGAACGGATTGTGGAAGAATACGGTC
* *
627286 AGTTTTTTGCAATGTGCCACTGTGCAGATTCAAGGCCTGCCACACTTGACTTAAAGATGATGAGG
671 AGTATTTTGCAATGTGCCACTGTGCAGATTCAAGGCCTGCCACACTAGACTTAAAGATGATGAGG
* *
627351 ATGAAGAGTGATAACAGGACTAGTACGTTGATTCACGGCCAACGATATTGGGTTTAAAGATGAGA
736 ATGAAGAGTGATAAAAGGACCAGTACGTTGATTCACGGCCAACGATATTGGGTTTAAAGATGAGA
*
627416 AAAAGGATGTCAATATGCTGATTCGCGGTCAGCAACAGTTAGACTTGAAGATGAGAAGAATGCCA
801 AAAAGGATGTCAATATGCTGATTCACGGTCAGCAACAGTTAGACTTGAAGATGAGAAGAATGCCA
*
627481 ATGTTCTCATTCAAGGCCAACGGCATTGGGTTTTAAAAATGATGAAGGCGCC
866 ATGTGCTCATTCAAGGCCAACGGCATTGGGTTTTAAAAATGATGAAGGCGCC
* *
627533 AATATGCTGATTCAAGGCCAGCGATATTGGACCTAAAGACGAAGGTGCCAATGTGTTGAGTCAAG
1 AATATGTTGATTCAAGGCCAGCGATATTGGACTTAAAGACGAAGGTGCCAATGTGTTGAGTCAAG
* *
627598 GCCAGCGACATTGGACTTAAAGATGAGGTGCGAATATGCTGATTCAAGACCAGCTATATTGGACT
66 GCCAGCGACATTGGACTTAAAGATGAGGTGCGAATATGCTGATTCAAGGCCAACTATATTGGACT
**
627663 TAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAATTATATTGGACTTAAAGGTGAGGTGCCAA
131 TAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAA
*
627728 TATGCTGATTCAAGGCGAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGAC
196 TATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGAC
*
627793 AGCTATATTGGACTTAAAGGTG-AGGTGCCAATATGCTGATTCAAGGCTAGCTATATTGGATATA
261 AGCTATATTGGACTTAAAGGTGTAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGATATA
** * * * * * *
627857 AAGGTGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTTGTCCCCACATATGTCAAAT
326 AAGGTGA-AAACCTGCCAATA-GCTGATGCAAGGCCAGCTAAAATTGGCCCAAAATATGTCAAAT
* * * * ****
627922 CCTCCACCTACTAGCTAGGCCCTAAATTGTTGAAAATTGGCCTGGACAAAATGAGGTGTCTACAG
389 CCTCCACCTACTA--TAGGCCCT--ATTGCTGAAAATAGGACAGGACAAAATGA-GCAAATACAG
* *
627987 CTGCCCCTCTTTGGCCGTTTCTGAGTATCAGGAACAGGCCAAAGACAAATAGACACCATTTTGTC
449 C-GACCATCTTT---CG-TTCT--G--TCAGG-ACAGGCCAAAGAC-AATAGA-ACC---TT-T-
*
628052 TACGGCCGCATGTCATGACCTTTGGTGATTAATGCTTCGCCGTGATGAATG-GTGCATCGGTGTC
497 T------G---G---TGA-------TG--TAATGCTTCGCCGTGATGAATGAGTGCATCGGTGAC
* *
628116 GGTTTCGATGGAAAAATGAGTTTGTAGGGTTTGTCTTCCCTACTAGGTTTTGGAATTTTCTAAGG
541 GGTTTCGATGGAAAAATGAGTTTCTAGGGTTTCTCTTCCCTACTAGGTTTTGGAATTTTCTAAGG
628181 CTTGACCTCCTTAGATAGGTGTACATTGGTGTAGAGTTTGGAACGGATTGTGGAAGAATACGGTC
606 CTTGACCTCCTTAGATAGGTGTACATTGGTGTAGAGTTTGGAACGGATTGTGGAAGAATACGGTC
* *
628246 AGTTTTTTGCAATGTGCCACTGTGCAGATTCAAGGCCTGCCACACTTGACTTAAAGATGATGAGG
671 AGTATTTTGCAATGTGCCACTGTGCAGATTCAAGGCCTGCCACACTAGACTTAAAGATGATGAGG
* *
628311 ATGAAGAGTGATAACAGGACTAGTACGTTGATTCACGGCCAACGATATTGGGTTTAAAGATGAGA
736 ATGAAGAGTGATAAAAGGACCAGTACGTTGATTCACGGCCAACGATATTGGGTTTAAAGATGAGA
*
628376 AAAAGGATGTCAATATGCTGATTCGCGGTCAGCAACAGTTAGACTTGAAGATGAGAAGAATGCCA
801 AAAAGGATGTCAATATGCTGATTCACGGTCAGCAACAGTTAGACTTGAAGATGAGAAGAATGCCA
*
628441 ATGTTCTCATTCAAGGCCAACGGCATTGGGTTTTAAAAATGATGAAGGCGCC
866 ATGTGCTCATTCAAGGCCAACGGCATTGGGTTTTAAAAATGATGAAGGCGCC
* * *
628493 AATATGTTGAGTCAAGGCCAACGATATTGGACTTAAAGACCAAGGTGCCAATGTGTTGAGTCAAG
1 AATATGTTGATTCAAGGCCAGCGATATTGGACTTAAAGACGAAGGTGCCAATGTGTTGAGTCAAG
* *
628558 GCCAGCGACATTGGACTTAAAGATGAGGTGCGATTATGCTGATTCAAGGCCAACTACATTGGACT
66 GCCAGCGACATTGGACTTAAAGATGAGGTGCGAATATGCTGATTCAAGGCCAACTATATTGGACT
* *
628623 TAAAGGTGAGGTGCCAATATGCTGATTCAAGACCAGCTATATTGGACTTAAAGGTGAGGTTCCAA
131 TAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAA
* *
628688 TATGCTGATTCAAGGCCAACTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCC
196 TATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGAC
*
628753 AGCTATATTGGACTTAAAGGT-TAGGTGCCAATATGCTGATTCAAGGCCAACTATATTGGACT-T
261 AGCTATATTGGACTTAAAGGTGTAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGA-TAT
** * * * **
628816 AAAGGTG---AGGTGCCAATATGCTGATTCAAGGCTAGCT-ATATTGGACTTAAAGGTGATAAAG
325 AAAGGTGAAAACCTGCCAATA-GCTGATGCAAGGCCAGCTAAAATTGG-CCCAAA----AT--A-
* * * * *
628877 GTGCCAATATGCTGATTCAAGGCC-AGCTATATTCGTTCCCACATATGTCGAATCCTCCACCTAC
381 -TGTCAA-AT-C---CTCCA--CCTA-CTATA---G--GCC-C-TAT-T-G----CT-GA---A-
* * * * * *
628941 TAGCTAGGCCCTAAATTGTTGA-AAATTGGCCTGGACAAAATGAGGTGTCTACGGCTACCCCTCT
419 -A-ATAGG----ACA--G--GACAAAAT-G---AG-C-AAAT-A-----C-A--GCGA-CCATCT
* * * *** * *** * *
629005 TTGGCCGTTTCTG--AGTATCAGG--AACAGGCCAA-AG-ACAAATAGACACCAT-T-TTGTCTG
458 TTCG----TTCTGTCAGGA-CAGGCCAA-A-GACAATAGAACCTTTTG--GTGATGTAATG-CTT
* * * * *
629062 CGGCCG-CATGTCATGACCTTTG-GTGATTAATGCTTCGCCGTGATGAAGAGTGCATCGGTGACG
513 C-GCCGTGATG-AATGA---GTGCAT-C------------------------------GGTGACG
629125 GTTTCGATGGAAAAATGAGTTTCTAGGGTTTCTCTTCCCTACTAGGTTTTGGAATTTTCTAAGGC
542 GTTTCGATGGAAAAATGAGTTTCTAGGGTTTCTCTTCCCTACTAGGTTTTGGAATTTTCTAAGGC
* *
629190 TTGACCTCCTTAGATAGGTGTAGATTGGTGTAGAGTTTGTAACGGATTGTGGAAGAATACGGTCA
607 TTGACCTCCTTAGATAGGTGTACATTGGTGTAGAGTTTGGAACGGATTGTGGAAGAATACGGTCA
*
629255 GTATTTTGCAATATGCCACTGTGCAGATTCAAGGCCTGCCACACTAGACTTAAAGATGATGAGGA
672 GTATTTTGCAATGTGCCACTGTGCAGATTCAAGGCCTGCCACACTAGACTTAAAGATGATGAGGA
* *
629320 TGAAGTGTGATAAAAGGACCAGTTCGTTGATTCACGGCCAACGATATTGGGTTTAAAGATGAGAA
737 TGAAGAGTGATAAAAGGACCAGTACGTTGATTCACGGCCAACGATATTGGGTTTAAAGATGAGAA
* * *
629385 AAAGGATGTCAATATGCTGATTCACTGTCAGCAATAGTTAGACTTGAAGATGAGAAGAATGCTAA
802 AAAGGATGTCAATATGCTGATTCACGGTCAGCAACAGTTAGACTTGAAGATGAGAAGAATGCCAA
*
629450 TGTGCTGATTCAAGGCCAACGGCATTGGGTTTTAAAAATGATGAAGGCGCC
867 TGTGCTCATTCAAGGCCAACGGCATTGGGTTTTAAAAATGATGAAGGCGCC
* *
629501 AATATGCTGATTCAAGGCCAGCGATATTGGACCTAAAGACGAAGGTGCCAATGTGTTGAGTCAAG
1 AATATGTTGATTCAAGGCCAGCGATATTGGACTTAAAGACGAAGGTGCCAATGTGTTGAGTCAAG
* *
629566 GCCAGCGACATTGGACTTAAAGATGAGGTGCGAATATGCTGATTCAAGGCCAACTACATTCGACT
66 GCCAGCGACATTGGACTTAAAGATGAGGTGCGAATATGCTGATTCAAGGCCAACTATATTGGACT
* * * *
629631 TAAAGGTGAGGGGCCAATATGTTGATTCAAGACCAGCTATATTAGACTTAAAGGTGAGGTGCCAA
131 TAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAA
* * *
629696 TATGCTGATTCAAGGCTAACTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCC
196 TATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGAC
* * * *
629761 TGCTATATTTGACTTAAAGGTGATAAATGTGCCAATATGCTGATTCAAGGCCAGCTATATTCG-T
261 AGCTATATTGGACTTAAAGGTG-T--AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGAT
* * * * *
629825 CCCCA-AATATGTCG-AATCCT-CCACCTA-CT-A-GCTAGGCCCTAAATTGTTGAAAATTGGCC
323 ----ATAA-AGGT-GAAAACCTGCCA-ATAGCTGATGCAAGG-CC---A--GCT-AAAATTGG-C
* * * ** **
629884 CGGACAAAATGAGGTGTCTACA-GCTGCC-CCT-CT-TTGGCAGT-TT-CTGAGTATCAGGAACA
373 C---CAAAAT-A--TGTC-AAATCCT-CCACCTACTATAGGCCCTATTGCTGAAAAT-AGG-ACA
* * * * *
629943 GG-CCAAA-GA-CAAATAGA-C-ACCAT-TTT-G-TCTG-C-GG-C-TG-C-ATGTC-AT-GAA-
428 GGACAAAATGAGCAAATACAGCGACCATCTTTCGTTCTGTCAGGACAGGCCAAAGACAATAGAAC
*
629991 C-TTTGGTGAT-TAATGCTTCGCCGTGAT-AAAGAGTGCATCGGTGACGGTTTCGATGGAAAAAT
493 CTTTTGGTGATGTAATGCTTCGCCGTGATGAATGAGTGCATCGGTGACGGTTTCGATGGAAAAAT
* *
630053 GAGTTTGTAGGGTTTGTCTTCCCTACTAGGTTTTGGAATTTTCTAAGGCTTGACCTCCTTAGATA
558 GAGTTTCTAGGGTTTCTCTTCCCTACTAGGTTTTGGAATTTTCTAAGGCTTGACCTCCTTAGATA
*
630118 GGTGTAGATTGGTGTAGAGTTTGGAACGGATTGTGGAAGAATACGGTCAGTATTTTGCAATGTGC
623 GGTGTACATTGGTGTAGAGTTTGGAACGGATTGTGGAAGAATACGGTCAGTATTTTGCAATGTGC
* * *
630183 CACTGTGCAGATTCAAGGCCTGCCACACTGGACCTAATGATGATGAGGATGAAGAGTGATAAAAG
688 CACTGTGCAGATTCAAGGCCTGCCACACTAGACTTAAAGATGATGAGGATGAAGAGTGATAAAAG
630248 GACCAGTACGTTGATTCACGGCCAACGATATTGGGTTTAAAGATGAGAAAAAGGATGTCAATATG
753 GACCAGTACGTTGATTCACGGCCAACGATATTGGGTTTAAAGATGAGAAAAAGGATGTCAATATG
* * *
630313 CTGATTCACGGAAGGTGCCAATGTGTTGAGTCAAGGCCAGCGACATTGGTCTTAAAGATGAG--G
818 CTGATTCAC----GGT--C---------AG-CAA---CA--G---TTAGACTTGAAGATGAGAAG
* * * ** ** * *
630376 --TGCGAATATGCTGATTCAAGGCCAACTACATT-GGACTT--AAA-GGTG-AGGTGCC
859 AATGCCAATGTGCTCATTCAAGGCCAACGGCATTGGGTTTTAAAAATGATGAAGGCGCC
* * ** * * *
630428 AATATGTTGATTCAAGACCAGCTATATTGGACTTAAAGGTG-AGGTGCCAATATGCTGATTCAAG
1 AATATGTTGATTCAAGGCCAGCGATATTGGACTTAAAGACGAAGGTGCCAATGTGTTGAGTCAAG
* * * * * * *
630492 GCCAACTATATTGGACTCAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACT
66 GCCAGCGACATTGGACTTAAAGATGAGGTGCGAATATGCTGATTCAAGGCCAACTATATTGGACT
630557 TAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAA
131 TAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAA
*
630622 TATGCTGATTCAAGGCTAGCTATATTGGACTTAAAGGTGATAAAGGTGCCAATATGCTGATTCAA
196 TATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTG----AGGTGCCAATATGCTGATTCAA
* ** ** * ** * * * * ** * * *
630687 GGCCAGCTATATTCGTCCCCACATATGTCGAATCCTCCACCTACT-A-GCTAGGCC--CTA-A--
257 GGACAGCTATATT-GGACTTAAAGGTGTAG-GTGC-CAATATGCTGATTCAAGGCCAGCTATATT
* ** **
630745 --AT-T---GTTG--AA------AAT---TG--GCCTGG--A-C-AAAA-T-G------AGGTGT
319 GGATATAAAGGTGAAAACCTGCCAATAGCTGATGCAAGGCCAGCTAAAATTGGCCCAAAATATGT
* * * ** * ** *
630779 CTACA-GCTGCC-CCT-CT-TTGGCAGT-TT-TTGAGTATCAGGAACAGG-CCAAA-GA-CAAAT
384 C-AAATCCT-CCACCTACTATAGGCCCTATTGCTGAAAAT-AGG-ACAGGACAAAATGAGCAAAT
* * * * * * *** ** * ** *
630835 AGA-C-ACCAT-TTT-GTCTGCGGCCGCATGTCATGACCTTTGGTGATTA-ATGC-TTCGCTGTG
445 ACAGCGACCATCTTTCGT-T-CTG--TCAGGACA-GGCC-AAAGACAATAGAACCTTTTG--GTG
** * * ** * **** *** **
630894 ATAAAGAGTGCGTCG--GTGACGGTTTCGA-TGGAAAAATGA--GTTT-G-TAGG--GTTTGTCT
502 ATGTA-A-TGCTTCGCCGTGA-TGAAT-GAGTGCATCGGTGACGGTTTCGAT-GGAAAAATGAGT
* *** ** * * ** * * * ** *
630950 TCCCTACTAGGTTTTAGAATTTTCTA--AAG-CTT-G-ACCTCCTTA-G-AT-AGGTG------T
562 T---T-CTAGGGTTT-CTCTTCCCTACTAGGTTTTGGAATTTTCTAAGGCTTGACCTCCTTAGAT
631001 A---G---ATTGGTGTAGAGTTTGGAACGGATTGTGGAAGAATACGGTCAGTATTTTGCAATGTG
622 AGGTGTACATTGGTGTAGAGTTTGGAACGGATTGTGGAAGAATACGGTCAGTATTTTGCAATGTG
*
631060 CCACTGTGCAGATTCAAGGCCTGCCACACTTGACTTAAAGATGATGAGGATGAAGAGTGATAAAA
687 CCACTGTGCAGATTCAAGGCCTGCCACACTAGACTTAAAGATGATGAGGATGAAGAGTGATAAAA
631125 GGACCAGTACGTTGATTCACGGCCAACGATATTGGGTTTAAAGATGAGAAAAAGGATGTCAATAT
752 GGACCAGTACGTTGATTCACGGCCAACGATATTGGGTTTAAAGATGAGAAAAAGGATGTCAATAT
*
631190 GCTGATTCACGGTCAGCAACAGTTAGACTTGAAGATGAGAAGAATGCCAATGTGCTGATTCAAGG
817 GCTGATTCACGGTCAGCAACAGTTAGACTTGAAGATGAGAAGAATGCCAATGTGCTCATTCAAGG
*
631255 CCAACGGCATTGGGTTTTAAAAATGAAGAAGGCGCC
882 CCAACGGCATTGGGTTTTAAAAATGATGAAGGCGCC
* * * *
631291 AATATGCTGAGTCAAGGCCAGCGATATTGGACTTAAAGACGAAGGTGCGAATGTGTTGAGTCAAT
1 AATATGTTGATTCAAGGCCAGCGATATTGGACTTAAAGACGAAGGTGCCAATGTGTTGAGTCAAG
* * *
631356 GCCAGCGACATTGGACTTAAAGATGAGGTGCGAATATGCTGATTCAATGCCAACTACATTCGACT
66 GCCAGCGACATTGGACTTAAAGATGAGGTGCGAATATGCTGATTCAAGGCCAACTATATTGGACT
* * *
631421 TAAAGGTGAGGTGCCAATATGCTGATTCAAGACCAGATGTATTGGACTTAAAGGTGAGGTGCCAA
131 TAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAA
* * * *
631486 TATACTGATTCAAGGCCAACTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTTAAGGCC
196 TATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGAC
* *
631551 AGCTATATTGGACTTAAATGTG-AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGAACT-T
261 AGCTATATTGGACTTAAAGGTGTAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGA-TAT
** * * * * **
631614 AAAGGTG---AGGTCCCAATATGCTGATTCAAGGCTAGCT-ATATTGGACTTAAAGGTGATAAAG
325 AAAGGTGAAAACCTGCCAATA-GCTGATGCAAGGCCAGCTAAAATTGG-CCCAAA----AT--A-
* * ** * * *
631675 GTGCCAATATGCTGATTGAAGGCCAACTATATTCGTCCCCACATATGTCGAATCCTCCACCTACT
381 -TGTCAA-AT-C---CTCCA--CCTACTATA---G--GCC-C-TAT-T-G----CT-GA---A--
* * * * * *
631740 AGCTAGGCCCTAAATTGTTGA-AAATTGGCCTGGACAAAATGAGGTGTCTACAGCTACCCCTCTT
419 A-ATAGG----ACA--G--GACAAAAT-G---AG-C--AA--A------TACAGCGA-CCATCTT
* * * *** * *** * *
631804 TGGCCGTTTCTG--AGTATCAGG--AACAGGCCAA-AG-ACAAATAGACACCAT-T-TTGTCTGC
459 TC---G-TTCTGTCAGGA-CAGGCCAA-A-GACAATAGAACCTTTTG--GTGATGTAATG-CTTC
* * * * *
631861 GGCCG-CATGTCATGACCTTTG-GTGATTAATGCTTCGCCGTGATGAAGAGTGCATCGGTGACGG
514 -GCCGTGATG-AATGA---GTGCAT-C------------------------------GGTGACGG
* * *
631924 TTTCGATGGAAAAATGAGTTTGTAGGGTTTGTCTTCCCTACTAGGTTTTGGAATTTTCTACGGCT
543 TTTCGATGGAAAAATGAGTTTCTAGGGTTTCTCTTCCCTACTAGGTTTTGGAATTTTCTAAGGCT
*
631989 TGACCTCCTTAGATAGGTGTAGATTGGTGTAGAGTTTGGAACGGATTGTGGAAGAATACGGTCAG
608 TGACCTCCTTAGATAGGTGTACATTGGTGTAGAGTTTGGAACGGATTGTGGAAGAATACGGTCAG
632054 TATTTTGCAATGTGCCACTGTGCAGATTCAAGGCCTGCCACACTAGACTTAAAGATGATGAGGAT
673 TATTTTGCAATGTGCCACTGTGCAGATTCAAGGCCTGCCACACTAGACTTAAAGATGATGAGGAT
632119 GAAGAGTGATAAAAGGACCAGTACGTTGATTCACGGCCAACGATATTGGGTTTAAAGATGAGAAA
738 GAAGAGTGATAAAAGGACCAGTACGTTGATTCACGGCCAACGATATTGGGTTTAAAGATGAGAAA
632184 AAGGATGTCAATATGCTGA-T-A--GT---C-A-A-TT--AC--G--GA--AG-AG-ATGCCAAT
803 AAGGATGTCAATATGCTGATTCACGGTCAGCAACAGTTAGACTTGAAGATGAGAAGAATGCCAAT
* * * ** * *
632229 GTGCTGATTCAAGGCCAGCGACATT-GGACTT-AAAATGATG-AGGTGCG
868 GTGCTCATTCAAGGCCAACGGCATTGGGTTTTAAAAATGATGAAGGCGCC
* * * ** * *
632276 AATATGCTGATTCAAGGCCAAGCTACATTGGACTTAAAGGTG-AGGTGCCAAT-TGCTGATTCAA
1 AATATGTTGATTCAAGGCC-AGCGATATTGGACTTAAAGACGAAGGTGCCAATGTGTTGAGTCAA
* * * * * *
632339 GGCCAACTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGAC
65 GGCCAGCGACATTGGACTTAAAGATGAGGTGCGAATATGCTGATTCAAGGCCAACTATATTGGAC
* *
632404 TTAAAGGTGAGGTGCCAATATGCTCATTCAAGGCCAGCTATAATGGACTTAAAGGTGAGGTGCCA
130 TTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCA
* * *
632469 ATATGCTGATTCAAGGCCAGCTATATTGGACTAAAAGGTGAGGTGCCGATATGCTGATTCAAGGC
195 ATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGA
*
632534 CAGCTATATTGGACTTAAAGGTGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTCG-
260 CAGCTATATTGGACTTAAAGGTG-T--AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGA
* * * * * * *
632598 TCCCCACATATGTCG-AATCCT-CCACCTA-CT-A-GCTAGGCCCTAAATTGTTGAAAATTGGCC
322 T----ATAAAGGT-GAAAACCTGCCA-ATAGCTGATGCAAGG-CC---A--GCT-AAAATTGGCC
* * * ** **
632658 TGGACAAAATGAGGTGTCTACA-GCTGCC-CCT-CT-TTGGCAGT-TT-CTGAGTATCAGGAACA
374 ----CAAAAT-A--TGTC-AAATCCT-CCACCTACTATAGGCCCTATTGCTGAAAAT-AGG-ACA
* * * * *
632717 GG-CCAAA-GA-CAAATAGA-C-ACCAT-TTT-G-TCTG-C-GG-C-CG-C-ATGTC-AT-G-AC
428 GGACAAAATGAGCAAATACAGCGACCATCTTTCGTTCTGTCAGGACAGGCCAAAGACAATAGAAC
*
632765 C-TTTGGTGAT-TAATGCTTCGCCGTGAT-AAAGAGTGCATCGGTGACGGTTTCGATGGAAAAAT
493 CTTTTGGTGATGTAATGCTTCGCCGTGATGAATGAGTGCATCGGTGACGGTTTCGATGGAAAAAT
* *
632827 GAGTTTGTAGGGTTTGTCTTCCCTACTAGGTTTTGGAATTTTCTAAGGCTTGACCTCCTTAGATA
558 GAGTTTCTAGGGTTTCTCTTCCCTACTAGGTTTTGGAATTTTCTAAGGCTTGACCTCCTTAGATA
*
632892 GGTGTAGATTGGTGTAGAGTTTGGAACGGATTGTGGAAGAATACGGTCAGTATTTTGCAATGTGC
623 GGTGTACATTGGTGTAGAGTTTGGAACGGATTGTGGAAGAATACGGTCAGTATTTTGCAATGTGC
* * * *
632957 CACTGTGCAGATTCAAGGCCTGCCACACTTGACTTAAATATGATGAGGATGAAAAGTGATAACAG
688 CACTGTGCAGATTCAAGGCCTGCCACACTAGACTTAAAGATGATGAGGATGAAGAGTGATAAAAG
*
633022 GACCAGTACGTTGATTCATGGCCAACGATATTGGGTTTAAAGATGAGAAAAAGGATGTCAATATG
753 GACCAGTACGTTGATTCACGGCCAACGATATTGGGTTTAAAGATGAGAAAAAGGATGTCAATATG
*
633087 CTGATTCACGGTCAGCAACAGTTAGACTTGAAGATGAGAAGAATGCCAATGTGCTGATTCAAGGC
818 CTGATTCACGGTCAGCAACAGTTAGACTTGAAGATGAGAAGAATGCCAATGTGCTCATTCAAGGC
*
633152 CAACGGCATTGGGTTTTAAAAATGATGAAGGCACC
883 CAACGGCATTGGGTTTTAAAAATGATGAAGGCGCC
* * *
633187 AATATGCTGAGTCAAGGCCAGCGATATTGGACTTAAAGACGAAGGTGCCAATGTGTTGAGTCAAT
1 AATATGTTGATTCAAGGCCAGCGATATTGGACTTAAAGACGAAGGTGCCAATGTGTTGAGTCAAG
* *
633252 GCCAGCGACATTGGACTTAAAGATGAGGTGCGAATATGCTGATTCAAGGCCAACTACATTCGACT
66 GCCAGCGACATTGGACTTAAAGATGAGGTGCGAATATGCTGATTCAAGGCCAACTATATTGGACT
* *
633317 TAAAGGTGATGG-GCCAATATGTTGATTCAAGACCAGCTATATTGGACTTAAAGGTGAGGTGCCA
131 TAAAGGTGA-GGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCA
*
633381 ATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAATAAGCTGATTCAAGG-
195 ATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGA
*
633445 CTAGCTATATTGGACTTAAAGGTGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTCG
260 C-AGCTATATTGGACTTAAAGGTG-T--AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGG
* * * * * * *
633510 -TCCCCACATATGTCG-AATCCT-CCACCTA-CT-A-GCTAGGCCCTAAATTGTTGAAAATTGGC
321 AT----ATAAAGGT-GAAAACCTGCCA-ATAGCTGATGCAAGG-CC---A--GCT-AAAATTGGC
* * * ** * **
633569 CTGGACAAAATGAGGTGTCTACA-GCTGCC-CCT-CT-TTGGCAGT-TT-TTGAGTATCAGGAAC
373 C----CAAAAT-A--TGTC-AAATCCT-CCACCTACTATAGGCCCTATTGCTGAAAAT-AGG-AC
* * * * *
633628 AGG-CCAAA-GA-CAAATAGA-C-ACCAT-TTT-G-TCTG-C-GG-C-CG-C-ATGTC-AT-G-A
427 AGGACAAAATGAGCAAATACAGCGACCATCTTTCGTTCTGTCAGGACAGGCCAAAGACAATAGAA
* *
633676 CC-TTTGGTGAT-TAATGCTTCGCCGTGAT-AAAGATTGCATCGGTGACGGTTTCGATGGAAAAA
492 CCTTTTGGTGATGTAATGCTTCGCCGTGATGAATGAGTGCATCGGTGACGGTTTCGATGGAAAAA
* * *
633738 TGAGTTTGTAGGGTTTGTCTTCCCTACTAGGTTTTGAAATTTTCTAAGGCTTGACCTCCTTAGAT
557 TGAGTTTCTAGGGTTTCTCTTCCCTACTAGGTTTTGGAATTTTCTAAGGCTTGACCTCCTTAGAT
* *
633803 AGGTGTAGATTGGTGTAGAGTTTGGAACGGATTGTGGAACAATACGGTCAGTATTTTGCAATGTG
622 AGGTGTACATTGGTGTAGAGTTTGGAACGGATTGTGGAAGAATACGGTCAGTATTTTGCAATGTG
* * *
633868 CCACTGTGCAGATTCAAGGCCTGCCACACTTGACTTAAAGATGATGAGGATGAAAAGTGATAACA
687 CCACTGTGCAGATTCAAGGCCTGCCACACTAGACTTAAAGATGATGAGGATGAAGAGTGATAAAA
*
633933 TGACCAGTACGTTGATTCACGGCCAACGATATTGGGTTTAAAGATGAGAAAAAGGATGTCAATAT
752 GGACCAGTACGTTGATTCACGGCCAACGATATTGGGTTTAAAGATGAGAAAAAGGATGTCAATAT
*
633998 GCTGATTCACGGTCAGCAACAGTTAGACTTGAAGATGAGAAGAATGCCAATGTGCTGATTCAAGG
817 GCTGATTCACGGTCAGCAACAGTTAGACTTGAAGATGAGAAGAATGCCAATGTGCTCATTCAAGG
*
634063 CCAACGGCATTGGGTTTTAAAAATGATGAAGGTGCC
882 CCAACGGCATTGGGTTTTAAAAATGATGAAGGCGCC
* * * * * ** * *
634099 AATGTGTTGAGTCAAGGCCAACTACATTGGACTTAAAGGTG-AGGTGCCAATATGTTGATTCAAG
1 AATATGTTGATTCAAGGCCAGCGATATTGGACTTAAAGACGAAGGTGCCAATGTGTTGAGTCAAG
* * * * *
634163 ACCAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAACTATATTGGACT
66 GCCAGCGACATTGGACTTAAAGATGAGGTGCGAATATGCTGATTCAAGGCCAACTATATTGGACT
*
634228 CAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAA
131 TAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAA
* *
634293 TATGCTCATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCC
196 TATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGAC
* *
634358 AGCTATATTGGACTAAAAGGTG-AGGTGCCGATATGCTGATTCAAGGCCAGCTATATTGGACT-T
261 AGCTATATTGGACTTAAAGGTGTAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGA-TAT
** * * * * * *
634421 AAAGGTGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCT-ATATTCGTCCCCACATATGTCGA
325 AAAGGTGA-AAACCTGCCAATA-GCTGATGCAAGGCCAGCTAAAATT-GGCCCAAAATATGTCAA
* * * * * ****
634485 ATCCTCCACCTACTAGCTAGGCCCTAAATTGTTCAAAATTGGCCTGGACAAAATGAGGTGTCTAC
387 ATCCTCCACCTACTA--TAGGCCCT--ATTGCTGAAAATAGGACAGGACAAAATGA-GCAAATAC
* *
634550 AGCTGCCCCTCTTTGGCAGTTTCTGAGTATCAGGAACAGGCCAAAGACAAATAGACACCATTTTG
447 AGC-GACCATCTTT--C-G-TTCT--G--TCAGG-ACAGGCCAAAGAC-AATAGA-ACC---TT-
*
634615 TCTGCGGCCGCATGTCATGACCTTTGGTGATTAATGCTTCGCCGTGAT-AAAGAGTGCATCGGTG
496 T-T------G---G---TGA-------TG--TAATGCTTCGCCGTGATGAATGAGTGCATCGGTG
* * * *
634679 ACGGTTTCAATGGAAAAATGAGTTTGTAGGGTTTGTCATCCCTACTAGGTTTTGGAATTTTCTAA
539 ACGGTTTCGATGGAAAAATGAGTTTCTAGGGTTTCTCTTCCCTACTAGGTTTTGGAATTTTCTAA
*
634744 GGCTTGACCTCCTTAGATAGGTGTAGATTGGTGTAGAGTTTGGAACGGATTGTGGAAGAATACGG
604 GGCTTGACCTCCTTAGATAGGTGTACATTGGTGTAGAGTTTGGAACGGATTGTGGAAGAATACGG
* * *
634809 TCAGTATTTTGCAATGTGCCGCTGTGCAGATTCAAGGCCTGCCACACTTGACTTAAAGATGATGG
669 TCAGTATTTTGCAATGTGCCACTGTGCAGATTCAAGGCCTGCCACACTAGACTTAAAGATGATGA
* *
634874 GGATGAAAAGTGATAACAGGACCAGTACGTTGATTCACGGCCAACGATATTGGGTTTAAAGATGA
734 GGATGAAGAGTGATAAAAGGACCAGTACGTTGATTCACGGCCAACGATATTGGGTTTAAAGATGA
634939 GAAAAAGGATGTCAATATGCTGATTCACGGTCAGCAACAGTTAGACTTGAAGATGAGAAGAATGC
799 GAAAAAGGATGTCAATATGCTGATTCACGGTCAGCAACAGTTAGACTTGAAGATGAGAAGAATGC
*
635004 CAATGTGCTGATTCAAGGCCAACGGCATTGGGTTTTAAAAATGATGAAGGCGCC
864 CAATGTGCTCATTCAAGGCCAACGGCATTGGGTTTTAAAAATGATGAAGGCGCC
* * *
635058 AATATGCTGAGTCAAGGCCAGCGATATTGGACTTAAAGACGAAGGTGCCAATGTGTTGAGTCAAT
1 AATATGTTGATTCAAGGCCAGCGATATTGGACTTAAAGACGAAGGTGCCAATGTGTTGAGTCAAG
* * *
635123 GCCAGCGACATTGGACTTAAAGATGAGGTGCGAATATGCTGATTCAATGCCAACTACATTCGACT
66 GCCAGCGACATTGGACTTAAAGATGAGGTGCGAATATGCTGATTCAAGGCCAACTATATTGGACT
*
635188 TAAAGGTGAGGTGCCAATATGCTGATTCAAGACCAGCTATATTGGACTTAAAGGTGAGGTGCCAA
131 TAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAA
* * *
635253 TATACTGATTCAAGGCCAACTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCC
196 TATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGAC
*
635318 AGCTATATTGGACTTAAAGGTG-AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGAACT-T
261 AGCTATATTGGACTTAAAGGTGTAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGA-TAT
635381 AAAGGTGA
325 AAAGGTGA
635389 GGTGCCAATA
Statistics
Matches: 10077, Mismatches: 864, Indels: 1297
0.82 0.07 0.11
Matches are distributed among these distances:
854 14 0.00
856 6 0.00
857 4 0.00
858 35 0.00
859 13 0.00
860 37 0.00
861 4 0.00
862 5 0.00
863 43 0.00
864 171 0.02
865 1 0.00
866 2 0.00
868 1 0.00
869 3 0.00
872 1 0.00
874 6 0.00
878 267 0.03
880 4 0.00
881 4 0.00
882 1 0.00
883 3 0.00
884 4 0.00
885 2 0.00
886 1 0.00
888 281 0.03
889 2 0.00
890 3 0.00
891 4 0.00
892 6 0.00
893 17 0.00
894 5 0.00
895 20 0.00
896 16 0.00
897 10 0.00
898 25 0.00
899 8 0.00
900 6 0.00
901 7 0.00
902 12 0.00
903 10 0.00
904 11 0.00
905 10 0.00
906 7 0.00
907 42 0.00
908 39 0.00
909 17 0.00
910 38 0.00
911 291 0.03
912 2751 0.27
913 13 0.00
914 7 0.00
915 3 0.00
916 10 0.00
917 15 0.00
918 15 0.00
919 5 0.00
920 12 0.00
921 9 0.00
922 42 0.00
923 16 0.00
924 11 0.00
925 5 0.00
926 404 0.04
927 88 0.01
928 21 0.00
929 12 0.00
930 47 0.00
931 20 0.00
932 62 0.01
933 4 0.00
934 3 0.00
935 3 0.00
936 31 0.00
937 4 0.00
938 4 0.00
939 5 0.00
940 2 0.00
941 4 0.00
942 5 0.00
943 4 0.00
944 3 0.00
945 4 0.00
946 8 0.00
947 8 0.00
948 4 0.00
949 5 0.00
950 19 0.00
951 4 0.00
952 5 0.00
953 5 0.00
954 36 0.00
955 12 0.00
956 45 0.00
957 9 0.00
958 16 0.00
959 483 0.05
960 2417 0.24
961 7 0.00
962 7 0.00
963 6 0.00
964 9 0.00
965 4 0.00
966 4 0.00
968 2 0.00
969 5 0.00
970 3 0.00
971 7 0.00
972 5 0.00
973 7 0.00
974 321 0.03
975 6 0.00
976 4 0.00
977 1 0.00
978 3 0.00
979 1 0.00
980 2 0.00
981 2 0.00
982 1 0.00
983 4 0.00
984 208 0.02
985 33 0.00
986 29 0.00
987 11 0.00
988 77 0.01
989 12 0.00
990 16 0.00
991 12 0.00
992 7 0.00
993 12 0.00
994 11 0.00
995 5 0.00
996 15 0.00
997 5 0.00
998 10 0.00
999 2 0.00
1000 6 0.00
1001 8 0.00
1002 11 0.00
1003 1 0.00
1004 3 0.00
1005 3 0.00
1006 4 0.00
1007 1 0.00
1008 839 0.08
1010 2 0.00
1011 1 0.00
1012 36 0.00
1013 2 0.00
1014 6 0.00
1015 6 0.00
1016 4 0.00
1017 3 0.00
1018 4 0.00
1020 9 0.00
1021 3 0.00
1022 7 0.00
1025 3 0.00
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.28
Consensus pattern (917 bp):
AATATGTTGATTCAAGGCCAGCGATATTGGACTTAAAGACGAAGGTGCCAATGTGTTGAGTCAAG
GCCAGCGACATTGGACTTAAAGATGAGGTGCGAATATGCTGATTCAAGGCCAACTATATTGGACT
TAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAA
TATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGAC
AGCTATATTGGACTTAAAGGTGTAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGATATA
AAGGTGAAAACCTGCCAATAGCTGATGCAAGGCCAGCTAAAATTGGCCCAAAATATGTCAAATCC
TCCACCTACTATAGGCCCTATTGCTGAAAATAGGACAGGACAAAATGAGCAAATACAGCGACCAT
CTTTCGTTCTGTCAGGACAGGCCAAAGACAATAGAACCTTTTGGTGATGTAATGCTTCGCCGTGA
TGAATGAGTGCATCGGTGACGGTTTCGATGGAAAAATGAGTTTCTAGGGTTTCTCTTCCCTACTA
GGTTTTGGAATTTTCTAAGGCTTGACCTCCTTAGATAGGTGTACATTGGTGTAGAGTTTGGAACG
GATTGTGGAAGAATACGGTCAGTATTTTGCAATGTGCCACTGTGCAGATTCAAGGCCTGCCACAC
TAGACTTAAAGATGATGAGGATGAAGAGTGATAAAAGGACCAGTACGTTGATTCACGGCCAACGA
TATTGGGTTTAAAGATGAGAAAAAGGATGTCAATATGCTGATTCACGGTCAGCAACAGTTAGACT
TGAAGATGAGAAGAATGCCAATGTGCTCATTCAAGGCCAACGGCATTGGGTTTTAAAAATGATGA
AGGCGCC
Found at i:624802 original size:48 final size:48
Alignment explanation
Indices: 624675--625007 Score: 387
Period size: 48 Copynumber: 6.8 Consensus size: 48
624665 TTTTAAAAAT
* * *
624675 GATGAAGGCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACCTAAA
1 GATG-AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
* * * * * *
624724 GACGAAGGTGCCAATGTGTTGAGTCAAGGCCAGCGACATTGGACTTAAA
1 GATG-AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
* * * *
624773 GATGAGGTGCGAATATGCTGATTCAAGGCCAACTACATTCGACTTAAA
1 GATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
* * * * *
624821 GGTGAGGGGCCAATATGTTGATTCAAGACCAGCTATATTAGACTTAAA
1 GATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
* * *
624869 GGTGAGGTGCCAATATGCTGATTCAAGGCTAACTATATTGGACTTAAA
1 GATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
* * *
624917 GGTGAGGTGCCAATATGCTGATTCAAGGCCTGCTATATTTGACTTAAA
1 GATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
*
624965 GGTGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATT
1 ---GAT-GAGGTGCCAATATGCTGATTCAAGGCCAGCTATATT
625008 CGTCCCCAAA
Statistics
Matches: 244, Mismatches: 36, Indels: 5
0.86 0.13 0.02
Matches are distributed among these distances:
48 163 0.67
49 45 0.18
51 2 0.01
52 34 0.14
ACGTcount: A:0.31, C:0.17, G:0.26, T:0.26
Consensus pattern (48 bp):
GATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
Found at i:625584 original size:48 final size:48
Alignment explanation
Indices: 625511--625981 Score: 737
Period size: 48 Copynumber: 9.7 Consensus size: 48
625501 GATTCACGGA
* * * * * * *
625511 AGGTGCCAATGTGTTGAGTCAAGGCCAGCGACATTGGTCTTAAAGATG
1 AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTG
* * *
625559 AGGTGCGAATATGCTGATTCAAGGCCAACTACATTGGACTTAAAGGTG
1 AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTG
* *
625607 AGGTGCCAATATGTTGATTCAAGACCAGCTATATTGGACTTAAAGGTG
1 AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTG
* *
625655 AGGTGCCAATATGCTGATTCAAGGCCAACTATATTGGACTCAAAGGTG
1 AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTG
625703 AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTG
1 AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTG
625751 AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTG
1 AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTG
*
625799 AGGTGCCAATATGCTGATTCAAGGCGAGCTATATTGGACTTAAAGGTG
1 AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTG
*
625847 AGGTGCCAATATGCTGATTCAAGGACAGCTATATTGGACTTAAAGGTG
1 AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTG
*
625895 AGGTGCCAATATGCTGATTCAAGGCTAGCTATATTGGA-TATAAAGGTG
1 AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACT-TAAAGGTG
625943 ATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATT
1 ----AGGTGCCAATATGCTGATTCAAGGCCAGCTATATT
625982 TGTCCCCACA
Statistics
Matches: 393, Mismatches: 25, Indels: 6
0.93 0.06 0.01
Matches are distributed among these distances:
47 1 0.00
48 358 0.91
52 34 0.09
ACGTcount: A:0.30, C:0.16, G:0.27, T:0.27
Consensus pattern (48 bp):
AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTG
Found at i:625822 original size:26 final size:26
Alignment explanation
Indices: 625793--625918 Score: 69
Period size: 26 Copynumber: 5.2 Consensus size: 26
625783 ATTGGACTTA
625793 AAGGTGAGGTGCCAATATGCTGATTC
1 AAGGTGAGGTGCCAATATGCTGATTC
* * *
625819 AAGGCGA---G-CTATAT--TGGACTTA
1 AAGGTGAGGTGCCAATATGCT-GA-TTC
625841 AAGGTGAGGTGCCAATATGCTGATTC
1 AAGGTGAGGTGCCAATATGCTGATTC
** * *
625867 AA-G-GA-CAG-CTATAT--TGGACTTA
1 AAGGTGAGGTGCCAATATGCT-GA-TTC
625889 AAGGTGAGGTGCCAATATGCTGATTC
1 AAGGTGAGGTGCCAATATGCTGATTC
625915 AAGG
1 AAGG
625919 CTAGCTATAT
Statistics
Matches: 70, Mismatches: 14, Indels: 32
0.60 0.12 0.28
Matches are distributed among these distances:
20 2 0.03
21 4 0.06
22 22 0.31
23 3 0.04
24 4 0.06
25 3 0.04
26 26 0.37
27 4 0.06
28 2 0.03
ACGTcount: A:0.30, C:0.14, G:0.29, T:0.26
Consensus pattern (26 bp):
AAGGTGAGGTGCCAATATGCTGATTC
Found at i:626691 original size:48 final size:48
Alignment explanation
Indices: 626570--626941 Score: 530
Period size: 48 Copynumber: 7.6 Consensus size: 48
626560 TGATGAAGGC
* * **
626570 GCCAATATGCTGATTCAAGGCCAGCGATATTGGACCTAAAGACGAAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTG-AGGT
* * * * * *
626619 GCCAATGTGTTGAGTCAAGGCCAGCGACATTGGACTTAAAGATGAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGT
* *
626667 GCGAATATGCTGATTCAAGACCAGCTATATTGGACTTAAAGGTGAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGT
**
626715 GCCAATATGCTGATTCAAGGCCAATTATATTGGACTTAAAGGTGAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGT
*
626763 GCCAATATGCTGATTCAAGGCGAGCTATATTGGACTTAAAGGTGAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGT
*
626811 GCCAATATGCTGATTCAAGGACAGCTATATTGGACTTAAAGGTGAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGT
*
626859 GCCAATATGCTGATTCAAGGCTAGCTATATTGGA-TATAAAGGTGATAAAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACT-TAAAGGTG----AGGT
626911 GCCAATATGCTGATTCAAGGCCAGCTATATT
1 GCCAATATGCTGATTCAAGGCCAGCTATATT
626942 TGTCCCCACA
Statistics
Matches: 292, Mismatches: 26, Indels: 7
0.90 0.08 0.02
Matches are distributed among these distances:
47 1 0.00
48 219 0.75
49 38 0.13
52 34 0.12
ACGTcount: A:0.31, C:0.16, G:0.27, T:0.26
Consensus pattern (48 bp):
GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGT
Found at i:626782 original size:26 final size:26
Alignment explanation
Indices: 626753--626878 Score: 69
Period size: 26 Copynumber: 5.2 Consensus size: 26
626743 ATTGGACTTA
626753 AAGGTGAGGTGCCAATATGCTGATTC
1 AAGGTGAGGTGCCAATATGCTGATTC
* * *
626779 AAGGCGA---G-CTATAT--TGGACTTA
1 AAGGTGAGGTGCCAATATGCT-GA-TTC
626801 AAGGTGAGGTGCCAATATGCTGATTC
1 AAGGTGAGGTGCCAATATGCTGATTC
** * *
626827 AA-G-GA-CAG-CTATAT--TGGACTTA
1 AAGGTGAGGTGCCAATATGCT-GA-TTC
626849 AAGGTGAGGTGCCAATATGCTGATTC
1 AAGGTGAGGTGCCAATATGCTGATTC
626875 AAGG
1 AAGG
626879 CTAGCTATAT
Statistics
Matches: 70, Mismatches: 14, Indels: 32
0.60 0.12 0.28
Matches are distributed among these distances:
20 2 0.03
21 4 0.06
22 22 0.31
23 3 0.04
24 4 0.06
25 3 0.04
26 26 0.37
27 4 0.06
28 2 0.03
ACGTcount: A:0.30, C:0.14, G:0.29, T:0.26
Consensus pattern (26 bp):
AAGGTGAGGTGCCAATATGCTGATTC
Found at i:627045 original size:960 final size:960
Alignment explanation
Indices: 624678--629821 Score: 7667
Period size: 960 Copynumber: 5.3 Consensus size: 960
624668 TAAAAATGAT
* * * * * * * * * *
624678 GAAGGCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACCTAAAGACGAAGGTGCCAATGTGT
1 GAAGGTGCCAATGTGTTGAGTCAAGGCCAGCGACATTGGACTTAAAGATG-AGGTGCGAATATGC
* * * *
624743 TGAGTCAAGGCCAGCGACATTGGACTTAAAGATGAGGTGCGAATATGCTGATTCAAGGCCAACTA
65 TGATTCAAGGCCAGCTACATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAACTA
* * * * * * *
624808 CATTCGACTTAAAGGTGAGGGGCCAATATGTTGATTCAAGACCAGCTATATTAGACTTAAAGGTG
130 TATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCGAGCTATATTGGACTTAAAGGTG
*
624873 AGGTGCCAATATGCTGATTCAAGG-CTAACTATATTGGACTTAAAGGTGAGGTGCCAATATGCTG
195 AGGTGCCAATATGCTGATTCAAGGAC-AGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTG
*
624937 ATTCAAGGCCT-GCTATATTTGACT-TAAAGGTGATAAAGGTGCCAATATGCTGATTCAAGGCCA
259 ATTCAAGG-CTAGCTATATTGGA-TATAAAGGTGATAAAGGTGCCAATATGCTGATTCAAGGCCA
* * * *
625000 GCTATATTCGTCCCCAAATATGTCGAATCCTCCACCTACTAGCTAGGCCCTAAATTGTTAAAAAT
322 GCTATATTTGTCCCCACATATGTCAAATCCTCCACCTACTAGCTAGGCCCTAAATTGTTGAAAAT
* *
625065 TGGCCCGGACAAAATGAGGTGTCTACAGCTGCCCCTCTTTGGCAGTTTCTGAGTATCAGGAACAG
387 TGGCCTGGACAAAATGAGGTGTCTACAGCTGCCCCTCTTTGGCCGTTTCTGAGTATCAGGAACAG
* * *
625130 GCCAAAGACAAATAGACACCATTTTGTCTGCGGCTGCATGTCATGAACTTTGGTGATTAATGCTT
452 GCCAAAGACAAATAGACACCATTTTGTCTACGGCCGCATGTCATGACCTTTGGTGATTAATGCTT
625195 CGCCGTGATGAAGAGTGCATCGGTGACGGTTTCGATGGAAAAATGAGTTTGTAGGGTTTGTCTTC
517 CGCCGTGATGAAGAGTGCATCGGTGACGGTTTCGATGGAAAAATGAGTTTGTAGGGTTTGTCTTC
625260 CCTACTAGGTTTTGGAATTTTCTAAGGCTTGACCTCCTTAGATAGGTGTAGATTGGTGTAGAGTT
582 CCTACTAGGTTTTGGAATTTTCTAAGGCTTGACCTCCTTAGATAGGTGTAGATTGGTGTAGAGTT
625325 TGGAACGGATTGTGGAAGAATACGGTCAGTATTTTGCAATGTGCCACTGTGCAGATTCAAGGCCT
647 TGGAACGGATTGTGGAAGAATACGGTCAGTATTTTGCAATGTGCCACTGTGCAGATTCAAGGCCT
* *
625390 GCCACACTAGACCTAATGATGATGAGGATGAAGAGTGATAAAAGGACCAGTACGTTGATTCACGG
712 GCCACACTAGACTTAAAGATGATGAGGATGAAGAGTGATAAAAGGACCAGTACGTTGATTCACGG
*
625455 CCAACGATATTGGGTTTAAAGATGAGAAAAAGGATGTCAATATGCTGATTCACGG-AAGGTGCCA
777 CCAACGATATTGGGTTTAAAGATGAGAAAAAGGATGTCAATATGCTGATTCACGGTCA---G-CA
* ** * * * *
625519 ATGTGTTGAGTCAAGGCCAGCGACATTG-GTCTTAAAGATGAGGTGCGAATATGCTGATTCAAGG
838 AT-AGTT-AG---A--CTTG-AAGA-TGAG-----AAGA--A--TGCCAATGTGCTGATTCAAGG
** ** * * * * *
625583 CCAACTACATT-GGACTT--AAA-GGTG-AGGTGCCAATATGTTGATTCAAGACCAGCTATATTG
885 CCAACGGCATTGGGTTTTAAAAATGATGAAGGCGCCAATATGCTGATTCAAGGCCAGCGATATTG
* **
625643 GACTTAAAGGT
950 GACCTAAAGAC
* * * * * * * * *
625654 G-AGGTGCCAATATGCTGATTCAAGGCCAACTATATTGGACTCAAAGGTGAGGTGCCAATATGCT
1 GAAGGTGCCAATGTGTTGAGTCAAGGCCAGCGACATTGGACTTAAAGATGAGGTGCGAATATGCT
* *
625718 GATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTAT
66 GATTCAAGGCCAGCTACATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAACTAT
625783 ATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCGAGCTATATTGGACTTAAAGGTGA
131 ATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCGAGCTATATTGGACTTAAAGGTGA
625848 GGTGCCAATATGCTGATTCAAGGACAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGAT
196 GGTGCCAATATGCTGATTCAAGGACAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGAT
625913 TCAAGGCTAGCTATATTGGATATAAAGGTGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTA
261 TCAAGGCTAGCTATATTGGATATAAAGGTGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTA
625978 TATTTGTCCCCACATATGTCAAATCCTCCACCTACTAGCTAGGCCCTAAATTGTTGAAAATTGGC
326 TATTTGTCCCCACATATGTCAAATCCTCCACCTACTAGCTAGGCCCTAAATTGTTGAAAATTGGC
626043 CTGGACAAAATGAGGTGTCTACAGCTGCCCCTCTTTGGCCGTTTCTGAGTATCAGGAACAGGCCA
391 CTGGACAAAATGAGGTGTCTACAGCTGCCCCTCTTTGGCCGTTTCTGAGTATCAGGAACAGGCCA
626108 AAGACAAATAGACACCATTTTGTCTACGGCCGCATGTCATGACCTTTGGTGATTAATGCTTCGCC
456 AAGACAAATAGACACCATTTTGTCTACGGCCGCATGTCATGACCTTTGGTGATTAATGCTTCGCC
* * * *
626173 TTGATGAAGAGTGCATCGGTGACGGTTTCGATGGAAAAATGAGTTTCTAGGGTTTCTCTTCCCGA
521 GTGATGAAGAGTGCATCGGTGACGGTTTCGATGGAAAAATGAGTTTGTAGGGTTTGTCTTCCCTA
*
626238 CTAGGTTTTGGAATTTTCTAAGGCTTGACCTCCTTAGATAGGTGTAGATTGGTGTAGAGTTTAGA
586 CTAGGTTTTGGAATTTTCTAAGGCTTGACCTCCTTAGATAGGTGTAGATTGGTGTAGAGTTTGGA
* *
626303 ACGGATTGTGGAAGAATATGGTCAGTATTTTGCAATGTGCCACTGTGCAGATTCAAGGTCTGCCA
651 ACGGATTGTGGAAGAATACGGTCAGTATTTTGCAATGTGCCACTGTGCAGATTCAAGGCCTGCCA
*
626368 CACTAGACTTAAAGATGATGAGGATGAAGAGTGATAAAAAGACCAGTACGTTGATTCACGGCCAA
716 CACTAGACTTAAAGATGATGAGGATGAAGAGTGATAAAAGGACCAGTACGTTGATTCACGGCCAA
* * *
626433 CAATATTGCGTTTAAAGATGAGAAAAAGGATGTCAATATGCTGATTCACTGTCAGCAATAGTTAG
781 CGATATTGGGTTTAAAGATGAGAAAAAGGATGTCAATATGCTGATTCACGGTCAGCAATAGTTAG
*
626498 ACTTGAAGATGAGAAGAATGCTAATGTGCTGATTCAAGGCCAACGGCATTGGGTTTTAAAAATGA
846 ACTTGAAGATGAGAAGAATGCCAATGTGCTGATTCAAGGCCAACGGCATTGGGTTTTAAAAATGA
626563 TGAAGGCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACCTAAAGAC
911 TGAAGGCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACCTAAAGAC
626613 GAAGGTGCCAATGTGTTGAGTCAAGGCCAGCGACATTGGACTTAAAGATGAGGTGCGAATATGCT
1 GAAGGTGCCAATGTGTTGAGTCAAGGCCAGCGACATTGGACTTAAAGATGAGGTGCGAATATGCT
* * *
626678 GATTCAAGACCAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAATTAT
66 GATTCAAGGCCAGCTACATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAACTAT
626743 ATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCGAGCTATATTGGACTTAAAGGTGA
131 ATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCGAGCTATATTGGACTTAAAGGTGA
626808 GGTGCCAATATGCTGATTCAAGGACAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGAT
196 GGTGCCAATATGCTGATTCAAGGACAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGAT
626873 TCAAGGCTAGCTATATTGGATATAAAGGTGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTA
261 TCAAGGCTAGCTATATTGGATATAAAGGTGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTA
626938 TATTTGTCCCCACATATGTCAAATCCTCCACCTACTAGCTAGGCCCTAAATTGTTGAAAATTGGC
326 TATTTGTCCCCACATATGTCAAATCCTCCACCTACTAGCTAGGCCCTAAATTGTTGAAAATTGGC
*
627003 CTGGACAAAATGAGGTGTCTACAGCTGCCCCTCTTTGGCCGTTTCTGATTATCAGGAACAGGCCA
391 CTGGACAAAATGAGGTGTCTACAGCTGCCCCTCTTTGGCCGTTTCTGAGTATCAGGAACAGGCCA
627068 AAGACAAATAGACACCATTTTGTCTACGGCCGCATGTCATGACCTTTGGTGATTAATGCTTCGCC
456 AAGACAAATAGACACCATTTTGTCTACGGCCGCATGTCATGACCTTTGGTGATTAATGCTTCGCC
*
627133 GTGATGAATG-GTGCATCGGTGTCGGTTTCGATGGAAAAATGAGTTTGTAGGGTTTGTCTTCCCT
521 GTGATGAA-GAGTGCATCGGTGACGGTTTCGATGGAAAAATGAGTTTGTAGGGTTTGTCTTCCCT
*
627197 ACTAGGTTTTGGAATTTTCTAAGGCTTGACCTCCTTAGATAGGTGTACATTGGTGTAGAGTTTGG
585 ACTAGGTTTTGGAATTTTCTAAGGCTTGACCTCCTTAGATAGGTGTAGATTGGTGTAGAGTTTGG
*
627262 AACGGATTGTGGAAGAATACGGTCAGTTTTTTGCAATGTGCCACTGTGCAGATTCAAGGCCTGCC
650 AACGGATTGTGGAAGAATACGGTCAGTATTTTGCAATGTGCCACTGTGCAGATTCAAGGCCTGCC
* * *
627327 ACACTTGACTTAAAGATGATGAGGATGAAGAGTGATAACAGGACTAGTACGTTGATTCACGGCCA
715 ACACTAGACTTAAAGATGATGAGGATGAAGAGTGATAAAAGGACCAGTACGTTGATTCACGGCCA
* *
627392 ACGATATTGGGTTTAAAGATGAGAAAAAGGATGTCAATATGCTGATTCGCGGTCAGCAACAGTTA
780 ACGATATTGGGTTTAAAGATGAGAAAAAGGATGTCAATATGCTGATTCACGGTCAGCAATAGTTA
* *
627457 GACTTGAAGATGAGAAGAATGCCAATGTTCTCATTCAAGGCCAACGGCATTGGGTTTTAAAAATG
845 GACTTGAAGATGAGAAGAATGCCAATGTGCTGATTCAAGGCCAACGGCATTGGGTTTTAAAAATG
627522 ATGAAGGCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACCTAAAGAC
910 ATGAAGGCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACCTAAAGAC
627573 GAAGGTGCCAATGTGTTGAGTCAAGGCCAGCGACATTGGACTTAAAGATGAGGTGCGAATATGCT
1 GAAGGTGCCAATGTGTTGAGTCAAGGCCAGCGACATTGGACTTAAAGATGAGGTGCGAATATGCT
* * *
627638 GATTCAAGACCAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAATTAT
66 GATTCAAGGCCAGCTACATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAACTAT
627703 ATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCGAGCTATATTGGACTTAAAGGTGA
131 ATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCGAGCTATATTGGACTTAAAGGTGA
627768 GGTGCCAATATGCTGATTCAAGGACAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGAT
196 GGTGCCAATATGCTGATTCAAGGACAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGAT
627833 TCAAGGCTAGCTATATTGGATATAAAGGTGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTA
261 TCAAGGCTAGCTATATTGGATATAAAGGTGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTA
627898 TATTTGTCCCCACATATGTCAAATCCTCCACCTACTAGCTAGGCCCTAAATTGTTGAAAATTGGC
326 TATTTGTCCCCACATATGTCAAATCCTCCACCTACTAGCTAGGCCCTAAATTGTTGAAAATTGGC
627963 CTGGACAAAATGAGGTGTCTACAGCTGCCCCTCTTTGGCCGTTTCTGAGTATCAGGAACAGGCCA
391 CTGGACAAAATGAGGTGTCTACAGCTGCCCCTCTTTGGCCGTTTCTGAGTATCAGGAACAGGCCA
628028 AAGACAAATAGACACCATTTTGTCTACGGCCGCATGTCATGACCTTTGGTGATTAATGCTTCGCC
456 AAGACAAATAGACACCATTTTGTCTACGGCCGCATGTCATGACCTTTGGTGATTAATGCTTCGCC
*
628093 GTGATGAATG-GTGCATCGGTGTCGGTTTCGATGGAAAAATGAGTTTGTAGGGTTTGTCTTCCCT
521 GTGATGAA-GAGTGCATCGGTGACGGTTTCGATGGAAAAATGAGTTTGTAGGGTTTGTCTTCCCT
*
628157 ACTAGGTTTTGGAATTTTCTAAGGCTTGACCTCCTTAGATAGGTGTACATTGGTGTAGAGTTTGG
585 ACTAGGTTTTGGAATTTTCTAAGGCTTGACCTCCTTAGATAGGTGTAGATTGGTGTAGAGTTTGG
*
628222 AACGGATTGTGGAAGAATACGGTCAGTTTTTTGCAATGTGCCACTGTGCAGATTCAAGGCCTGCC
650 AACGGATTGTGGAAGAATACGGTCAGTATTTTGCAATGTGCCACTGTGCAGATTCAAGGCCTGCC
* * *
628287 ACACTTGACTTAAAGATGATGAGGATGAAGAGTGATAACAGGACTAGTACGTTGATTCACGGCCA
715 ACACTAGACTTAAAGATGATGAGGATGAAGAGTGATAAAAGGACCAGTACGTTGATTCACGGCCA
* *
628352 ACGATATTGGGTTTAAAGATGAGAAAAAGGATGTCAATATGCTGATTCGCGGTCAGCAACAGTTA
780 ACGATATTGGGTTTAAAGATGAGAAAAAGGATGTCAATATGCTGATTCACGGTCAGCAATAGTTA
* *
628417 GACTTGAAGATGAGAAGAATGCCAATGTTCTCATTCAAGGCCAACGGCATTGGGTTTTAAAAATG
845 GACTTGAAGATGAGAAGAATGCCAATGTGCTGATTCAAGGCCAACGGCATTGGGTTTTAAAAATG
* * * *
628482 ATGAAGGCGCCAATATGTTGAGTCAAGGCCAACGATATTGGACTTAAAGAC
910 ATGAAGGCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACCTAAAGAC
* *
628533 CAAGGTGCCAATGTGTTGAGTCAAGGCCAGCGACATTGGACTTAAAGATGAGGTGCGATTATGCT
1 GAAGGTGCCAATGTGTTGAGTCAAGGCCAGCGACATTGGACTTAAAGATGAGGTGCGAATATGCT
* * *
628598 GATTCAAGGCCAACTACATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGACCAGCTAT
66 GATTCAAGGCCAGCTACATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAACTAT
* * *
628663 ATTGGACTTAAAGGTGAGGTTCCAATATGCTGATTCAAGGCCAACTATATTGGACTTAAAGGTGA
131 ATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCGAGCTATATTGGACTTAAAGGTGA
* *
628728 GGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTTAGGTGCCAATATGCTGAT
196 GGTGCCAATATGCTGATTCAAGGACAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGAT
* * *
628793 TCAAGGCCAACTATATTGGACT-TAAAGGTG----AGGTGCCAATATGCTGATTCAAGGCTAGCT
261 TCAAGGCTAGCTATATTGGA-TATAAAGGTGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCT
** ** * * *** * * * *
628853 ATA-TTGGACTTA-A-AGGTGATAAAGGTGCCA-ATATGCTGATTCAAGGCCAGCTATATTCGTT
325 ATATTTGTCCCCACATATGTCA-AATCCT-CCACCTA--CT-A-GCTAGGCC--CTAAATT-GTT
* * * ** ** * *
628914 CCCACATATGTCGAATCCTCCACCTACTAGCTAGGCCCTAAATTGT-TGAAAATTGGCCTGGACA
381 --GA-AAAT-T-G--GCCTGGACAAAAT-G--AGG--------TGTCT--ACA---G-CT-G-C-
*** * * * * * * * *
628978 AAATGAGGTGTCTACGGCTACCCCTCTT-TGGCCGTTTCTGAGTATCAGG--AACAGGCCAAAGA
419 CCCT---CT-T-T--GG----CCGT-TTCT-G-AGTATC--AGGAACAGGCCAA-A-GACAAATA
* *
629040 CAAATAGACACCATTTTGTCTGCGGCCGCATGTCATGACCTTTGGTGATTAATGCTTCGCCGTGA
466 GA------CACCATTTTGTCTACGGCCGCATGTCATGACCTTTGGTGATTAATGCTTCGCCGTGA
* *
629105 TGAAGAGTGCATCGGTGACGGTTTCGATGGAAAAATGAGTTTCTAGGGTTTCTCTTCCCTACTAG
525 TGAAGAGTGCATCGGTGACGGTTTCGATGGAAAAATGAGTTTGTAGGGTTTGTCTTCCCTACTAG
*
629170 GTTTTGGAATTTTCTAAGGCTTGACCTCCTTAGATAGGTGTAGATTGGTGTAGAGTTTGTAACGG
590 GTTTTGGAATTTTCTAAGGCTTGACCTCCTTAGATAGGTGTAGATTGGTGTAGAGTTTGGAACGG
*
629235 ATTGTGGAAGAATACGGTCAGTATTTTGCAATATGCCACTGTGCAGATTCAAGGCCTGCCACACT
655 ATTGTGGAAGAATACGGTCAGTATTTTGCAATGTGCCACTGTGCAGATTCAAGGCCTGCCACACT
* *
629300 AGACTTAAAGATGATGAGGATGAAGTGTGATAAAAGGACCAGTTCGTTGATTCACGGCCAACGAT
720 AGACTTAAAGATGATGAGGATGAAGAGTGATAAAAGGACCAGTACGTTGATTCACGGCCAACGAT
*
629365 ATTGGGTTTAAAGATGAGAAAAAGGATGTCAATATGCTGATTCACTGTCAGCAATAGTTAGACTT
785 ATTGGGTTTAAAGATGAGAAAAAGGATGTCAATATGCTGATTCACGGTCAGCAATAGTTAGACTT
*
629430 GAAGATGAGAAGAATGCTAATGTGCTGATTCAAGGCCAACGGCATTGGGTTTTAAAAATGATGAA
850 GAAGATGAGAAGAATGCCAATGTGCTGATTCAAGGCCAACGGCATTGGGTTTTAAAAATGATGAA
629495 GGCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACCTAAAGAC
915 GGCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACCTAAAGAC
629541 GAAGGTGCCAATGTGTTGAGTCAAGGCCAGCGACATTGGACTTAAAGATGAGGTGCGAATATGCT
1 GAAGGTGCCAATGTGTTGAGTCAAGGCCAGCGACATTGGACTTAAAGATGAGGTGCGAATATGCT
* * * * * *
629606 GATTCAAGGCCAACTACATTCGACTTAAAGGTGAGGGGCCAATATGTTGATTCAAGACCAGCTAT
66 GATTCAAGGCCAGCTACATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAACTAT
* * *
629671 ATTAGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCTAACTATATTGGACTTAAAGGTGA
131 ATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCGAGCTATATTGGACTTAAAGGTGA
* * * *
629736 GGTGCCAATATGCTGATTCAAGGCCTGCTATATTTGACTTAAAGGTGATAAATGTGCCAATATGC
196 GGTGCCAATATGCTGATTCAAGGACAGCTATATTGGACTTAAAGGTG----AGGTGCCAATATGC
*
629801 TGATTCAAGGCCAGCTATATT
257 TGATTCAAGGCTAGCTATATT
629822 CGTCCCCAAA
Statistics
Matches: 3898, Mismatches: 192, Indels: 120
0.93 0.05 0.03
Matches are distributed among these distances:
953 4 0.00
954 34 0.01
955 12 0.00
956 35 0.01
957 4 0.00
958 13 0.00
959 41 0.01
960 2155 0.55
961 5 0.00
962 2 0.00
963 4 0.00
964 5 0.00
965 1 0.00
966 2 0.00
968 7 0.00
969 3 0.00
970 3 0.00
971 7 0.00
972 1 0.00
973 3 0.00
974 735 0.19
975 43 0.01
976 1 0.00
978 1 0.00
979 3 0.00
980 2 0.00
983 1 0.00
984 2 0.00
985 1 0.00
986 1 0.00
987 1 0.00
990 1 0.00
991 1 0.00
992 1 0.00
994 2 0.00
998 4 0.00
999 3 0.00
1000 6 0.00
1001 1 0.00
1002 14 0.00
1007 1 0.00
1008 699 0.18
1012 33 0.01
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.28
Consensus pattern (960 bp):
GAAGGTGCCAATGTGTTGAGTCAAGGCCAGCGACATTGGACTTAAAGATGAGGTGCGAATATGCT
GATTCAAGGCCAGCTACATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAACTAT
ATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCGAGCTATATTGGACTTAAAGGTGA
GGTGCCAATATGCTGATTCAAGGACAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGAT
TCAAGGCTAGCTATATTGGATATAAAGGTGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTA
TATTTGTCCCCACATATGTCAAATCCTCCACCTACTAGCTAGGCCCTAAATTGTTGAAAATTGGC
CTGGACAAAATGAGGTGTCTACAGCTGCCCCTCTTTGGCCGTTTCTGAGTATCAGGAACAGGCCA
AAGACAAATAGACACCATTTTGTCTACGGCCGCATGTCATGACCTTTGGTGATTAATGCTTCGCC
GTGATGAAGAGTGCATCGGTGACGGTTTCGATGGAAAAATGAGTTTGTAGGGTTTGTCTTCCCTA
CTAGGTTTTGGAATTTTCTAAGGCTTGACCTCCTTAGATAGGTGTAGATTGGTGTAGAGTTTGGA
ACGGATTGTGGAAGAATACGGTCAGTATTTTGCAATGTGCCACTGTGCAGATTCAAGGCCTGCCA
CACTAGACTTAAAGATGATGAGGATGAAGAGTGATAAAAGGACCAGTACGTTGATTCACGGCCAA
CGATATTGGGTTTAAAGATGAGAAAAAGGATGTCAATATGCTGATTCACGGTCAGCAATAGTTAG
ACTTGAAGATGAGAAGAATGCCAATGTGCTGATTCAAGGCCAACGGCATTGGGTTTTAAAAATGA
TGAAGGCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACCTAAAGAC
Found at i:627651 original size:48 final size:48
Alignment explanation
Indices: 627530--627901 Score: 530
Period size: 48 Copynumber: 7.6 Consensus size: 48
627520 TGATGAAGGC
* * **
627530 GCCAATATGCTGATTCAAGGCCAGCGATATTGGACCTAAAGACGAAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTG-AGGT
* * * * * *
627579 GCCAATGTGTTGAGTCAAGGCCAGCGACATTGGACTTAAAGATGAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGT
* *
627627 GCGAATATGCTGATTCAAGACCAGCTATATTGGACTTAAAGGTGAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGT
**
627675 GCCAATATGCTGATTCAAGGCCAATTATATTGGACTTAAAGGTGAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGT
*
627723 GCCAATATGCTGATTCAAGGCGAGCTATATTGGACTTAAAGGTGAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGT
*
627771 GCCAATATGCTGATTCAAGGACAGCTATATTGGACTTAAAGGTGAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGT
*
627819 GCCAATATGCTGATTCAAGGCTAGCTATATTGGA-TATAAAGGTGATAAAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACT-TAAAGGTG----AGGT
627871 GCCAATATGCTGATTCAAGGCCAGCTATATT
1 GCCAATATGCTGATTCAAGGCCAGCTATATT
627902 TGTCCCCACA
Statistics
Matches: 292, Mismatches: 26, Indels: 7
0.90 0.08 0.02
Matches are distributed among these distances:
47 1 0.00
48 219 0.75
49 38 0.13
52 34 0.12
ACGTcount: A:0.31, C:0.16, G:0.27, T:0.26
Consensus pattern (48 bp):
GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGT
Found at i:627742 original size:26 final size:26
Alignment explanation
Indices: 627713--627838 Score: 69
Period size: 26 Copynumber: 5.2 Consensus size: 26
627703 ATTGGACTTA
627713 AAGGTGAGGTGCCAATATGCTGATTC
1 AAGGTGAGGTGCCAATATGCTGATTC
* * *
627739 AAGGCGA---G-CTATAT--TGGACTTA
1 AAGGTGAGGTGCCAATATGCT-GA-TTC
627761 AAGGTGAGGTGCCAATATGCTGATTC
1 AAGGTGAGGTGCCAATATGCTGATTC
** * *
627787 AA-G-GA-CAG-CTATAT--TGGACTTA
1 AAGGTGAGGTGCCAATATGCT-GA-TTC
627809 AAGGTGAGGTGCCAATATGCTGATTC
1 AAGGTGAGGTGCCAATATGCTGATTC
627835 AAGG
1 AAGG
627839 CTAGCTATAT
Statistics
Matches: 70, Mismatches: 14, Indels: 32
0.60 0.12 0.28
Matches are distributed among these distances:
20 2 0.03
21 4 0.06
22 22 0.31
23 3 0.04
24 4 0.06
25 3 0.04
26 26 0.37
27 4 0.06
28 2 0.03
ACGTcount: A:0.30, C:0.14, G:0.29, T:0.26
Consensus pattern (26 bp):
AAGGTGAGGTGCCAATATGCTGATTC
Found at i:628608 original size:48 final size:48
Alignment explanation
Indices: 628490--628909 Score: 588
Period size: 48 Copynumber: 8.6 Consensus size: 48
628480 TGATGAAGGC
* * * * ***
628490 GCCAATATGTTGAGTCAAGGCCAACGATATTGGACTTAAAGACCAAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAG-GTGAGGT
* * * * * *
628539 GCCAATGTGTTGAGTCAAGGCCAGCGACATTGGACTTAAAGATGAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGT
* * * *
628587 GCGATTATGCTGATTCAAGGCCAACTACATTGGACTTAAAGGTGAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGT
*
628635 GCCAATATGCTGATTCAAGACCAGCTATATTGGACTTAAAGGTGAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGT
* *
628683 TCCAATATGCTGATTCAAGGCCAACTATATTGGACTTAAAGGTGAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGT
*
628731 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTTAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGT
*
628779 GCCAATATGCTGATTCAAGGCCAACTATATTGGACTTAAAGGTGAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGT
*
628827 GCCAATATGCTGATTCAAGGCTAGCTATATTGGACTTAAAGGTGATAAAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTG----AGGT
628879 GCCAATATGCTGATTCAAGGCCAGCTATATT
1 GCCAATATGCTGATTCAAGGCCAGCTATATT
628910 CGTTCCCACA
Statistics
Matches: 337, Mismatches: 30, Indels: 5
0.91 0.08 0.01
Matches are distributed among these distances:
48 265 0.79
49 38 0.11
52 34 0.10
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.27
Consensus pattern (48 bp):
GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGT
Found at i:629616 original size:48 final size:48
Alignment explanation
Indices: 629489--629821 Score: 378
Period size: 48 Copynumber: 6.8 Consensus size: 48
629479 TTTTAAAAAT
* * *
629489 GATGAAGGCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACCTAAA
1 GATG-AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
* * * * * *
629538 GACGAAGGTGCCAATGTGTTGAGTCAAGGCCAGCGACATTGGACTTAAA
1 GATG-AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
* * * *
629587 GATGAGGTGCGAATATGCTGATTCAAGGCCAACTACATTCGACTTAAA
1 GATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
* * * * *
629635 GGTGAGGGGCCAATATGTTGATTCAAGACCAGCTATATTAGACTTAAA
1 GATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
* * *
629683 GGTGAGGTGCCAATATGCTGATTCAAGGCTAACTATATTGGACTTAAA
1 GATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
* * *
629731 GGTGAGGTGCCAATATGCTGATTCAAGGCCTGCTATATTTGACTTAAA
1 GATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
* *
629779 GGTGATAAATGTGCCAATATGCTGATTCAAGGCCAGCTATATT
1 ---GAT-GAGGTGCCAATATGCTGATTCAAGGCCAGCTATATT
629822 CGTCCCCAAA
Statistics
Matches: 243, Mismatches: 37, Indels: 5
0.85 0.13 0.02
Matches are distributed among these distances:
48 163 0.67
49 45 0.19
51 2 0.01
52 33 0.14
ACGTcount: A:0.31, C:0.17, G:0.26, T:0.26
Consensus pattern (48 bp):
GATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
Found at i:630398 original size:48 final size:48
Alignment explanation
Indices: 630325--630699 Score: 579
Period size: 48 Copynumber: 7.7 Consensus size: 48
630315 GATTCACGGA
* * * * * * *
630325 AGGTGCCAATGTGTTGAGTCAAGGCCAGCGACATTGGTCTTAAAGATG
1 AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTG
* * *
630373 AGGTGCGAATATGCTGATTCAAGGCCAACTACATTGGACTTAAAGGTG
1 AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTG
* *
630421 AGGTGCCAATATGTTGATTCAAGACCAGCTATATTGGACTTAAAGGTG
1 AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTG
* *
630469 AGGTGCCAATATGCTGATTCAAGGCCAACTATATTGGACTCAAAGGTG
1 AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTG
630517 AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTG
1 AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTG
630565 AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTG
1 AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTG
*
630613 AGGTGCCAATATGCTGATTCAAGGCTAGCTATATTGGACTTAAAGGTG
1 AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTG
630661 ATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATT
1 ----AGGTGCCAATATGCTGATTCAAGGCCAGCTATATT
630700 CGTCCCCACA
Statistics
Matches: 302, Mismatches: 21, Indels: 4
0.92 0.06 0.01
Matches are distributed among these distances:
48 268 0.89
52 34 0.11
ACGTcount: A:0.30, C:0.17, G:0.26, T:0.27
Consensus pattern (48 bp):
AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTG
Found at i:631404 original size:48 final size:48
Alignment explanation
Indices: 631288--631707 Score: 534
Period size: 48 Copynumber: 8.6 Consensus size: 48
631278 TGAAGAAGGC
* * **
631288 GCCAATATGCTGAGTCAAGGCCAGCGATATTGGACTTAAAGACGAAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTG-AGGT
* * * * * * * *
631337 GCGAATGTGTTGAGTCAATGCCAGCGACATTGGACTTAAAGATGAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGT
* * * * *
631385 GCGAATATGCTGATTCAATGCCAACTACATTCGACTTAAAGGTGAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGT
* * *
631433 GCCAATATGCTGATTCAAGACCAGATGTATTGGACTTAAAGGTGAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGT
* *
631481 GCCAATATACTGATTCAAGGCCAACTATATTGGACTTAAAGGTGAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGT
* *
631529 GCCAATATGCTGATTTAAGGCCAGCTATATTGGACTTAAATGTGAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGT
*
631577 GCCAATATGCTGATTCAAGGCCAGCTATATTGAACTTAAAGGTGAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGT
* *
631625 CCCAATATGCTGATTCAAGGCTAGCTATATTGGACTTAAAGGTGATAAAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTG----AGGT
* *
631677 GCCAATATGCTGATTGAAGGCCAACTATATT
1 GCCAATATGCTGATTCAAGGCCAGCTATATT
631708 CGTCCCCACA
Statistics
Matches: 327, Mismatches: 40, Indels: 5
0.88 0.11 0.01
Matches are distributed among these distances:
48 258 0.79
49 38 0.12
52 31 0.09
ACGTcount: A:0.31, C:0.16, G:0.25, T:0.27
Consensus pattern (48 bp):
GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGT
Found at i:632343 original size:48 final size:48
Alignment explanation
Indices: 632222--632595 Score: 579
Period size: 48 Copynumber: 7.7 Consensus size: 48
632212 ACGGAAGAGA
* * * *
632222 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAATGATGAGG
1 TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT-AAA-GGTGAGG
* *
632272 TGCGAATATGCTGATTCAAGGCCAAGCTACATTGGACTTAAAGGTGAGG
1 TGCCAATATGCTGATTCAAGGCC-AGCTATATTGGACTTAAAGGTGAGG
*
632321 TGCCAAT-TGCTGATTCAAGGCCAACTATATTGGACTTAAAGGTGAGG
1 TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGG
632368 TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGG
1 TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGG
* *
632416 TGCCAATATGCTCATTCAAGGCCAGCTATAATGGACTTAAAGGTGAGG
1 TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGG
*
632464 TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTAAAAGGTGAGG
1 TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGG
*
632512 TGCCGATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGATAAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTG----AGG
632564 TGCCAATATGCTGATTCAAGGCCAGCTATATT
1 TGCCAATATGCTGATTCAAGGCCAGCTATATT
632596 CGTCCCCACA
Statistics
Matches: 302, Mismatches: 16, Indels: 10
0.92 0.05 0.03
Matches are distributed among these distances:
47 30 0.10
48 188 0.62
49 12 0.04
50 24 0.08
51 14 0.05
52 34 0.11
ACGTcount: A:0.30, C:0.17, G:0.26, T:0.26
Consensus pattern (48 bp):
TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGG
Found at i:633317 original size:48 final size:48
Alignment explanation
Indices: 633185--633507 Score: 396
Period size: 48 Copynumber: 6.6 Consensus size: 48
633175 GATGAAGGCA
* * *
633185 CCAATATGCTGAGTCAAGGCCAGCGATATTGGACTTAAAGACGAAGGTG
1 CCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATG-AGGTG
* * * * * *
633234 CCAATGTGTTGAGTCAATGCCAGCGACATTGGACTTAAAGATGAGGTG
1 CCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAGGTG
* * * * *
633282 CGAATATGCTGATTCAAGGCCAACTACATTCGACTTAAAGGTGATGG-G
1 CCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGA-GGTG
* * *
633330 CCAATATGTTGATTCAAGACCAGCTATATTGGACTTAAAGGTGAGGTG
1 CCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAGGTG
*
633378 CCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTG
1 CCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAGGTG
* * *
633426 CCAATAAGCTGATTCAAGGCTAGCTATATTGGACTTAAAGGTGATAAAGGTG
1 CCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA---GAT-GAGGTG
633478 CCAATATGCTGATTCAAGGCCAGCTATATT
1 CCAATATGCTGATTCAAGGCCAGCTATATT
633508 CGTCCCCACA
Statistics
Matches: 240, Mismatches: 28, Indels: 9
0.87 0.10 0.03
Matches are distributed among these distances:
47 2 0.01
48 163 0.68
49 40 0.17
51 2 0.01
52 33 0.14
ACGTcount: A:0.31, C:0.17, G:0.26, T:0.26
Consensus pattern (48 bp):
CCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAGGTG
Found at i:633423 original size:144 final size:147
Alignment explanation
Indices: 633185--633507 Score: 436
Period size: 144 Copynumber: 2.2 Consensus size: 147
633175 GATGAAGGCA
* * * *
633185 CCAATATGCTGAGTCAAGGCCAGCGATATTGGACTTAAAGACGAAGGTGCCAATGTGTTGAGTCA
1 CCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGACGAAGGTGCCAATATGCTGAGTCA
* * *
633250 ATGCCAGCGACATTGGACTTAAAGATGAGGTGCGAATATGCTGATTCAAGGCCAACTACATTCGA
66 AGGCCAGCGACATTGGACTTAAAGATGAGGTGCCAATAAGCTGATTCAAGGCCAACTACATTCGA
633315 CTTAAAGGTGAT-GG-G
131 CTTAAAGGTGATAGGTG
* * ** *
633330 CCAATATGTTGATTCAAGACCAGCTATATTGGACTTAAAGGTG-AGGTGCCAATATGCTGATTCA
1 CCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGACGAAGGTGCCAATATGCTGAGTCA
* * * * * * *
633394 AGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAATAAGCTGATTCAAGGCTAGCTATATTGGA
66 AGGCCAGCGACATTGGACTTAAAGATGAGGTGCCAATAAGCTGATTCAAGGCCAACTACATTCGA
633459 CTTAAAGGTGATAAAGGTG
131 CTTAAAGGTGAT--AGGTG
633478 CCAATATGCTGATTCAAGGCCAGCTATATT
1 CCAATATGCTGATTCAAGGCCAGCTATATT
633508 CGTCCCCACA
Statistics
Matches: 153, Mismatches: 21, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
144 85 0.56
145 37 0.24
147 2 0.01
148 29 0.19
ACGTcount: A:0.31, C:0.17, G:0.26, T:0.26
Consensus pattern (147 bp):
CCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGACGAAGGTGCCAATATGCTGAGTCA
AGGCCAGCGACATTGGACTTAAAGATGAGGTGCCAATAAGCTGATTCAAGGCCAACTACATTCGA
CTTAAAGGTGATAGGTG
Found at i:634162 original size:48 final size:48
Alignment explanation
Indices: 634092--634466 Score: 606
Period size: 48 Copynumber: 7.7 Consensus size: 48
634082 AAAATGATGA
* * * * *
634092 AGGTGCCAATGTGTTGAGTCAAGGCCAACTACATTGGACTTAAAGGTG
1 AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTG
* *
634140 AGGTGCCAATATGTTGATTCAAGACCAGCTATATTGGACTTAAAGGTG
1 AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTG
* *
634188 AGGTGCCAATATGCTGATTCAAGGCCAACTATATTGGACTCAAAGGTG
1 AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTG
634236 AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTG
1 AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTG
*
634284 AGGTGCCAATATGCTCATTCAAGGCCAGCTATATTGGACTTAAAGGTG
1 AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTG
*
634332 AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTAAAAGGTG
1 AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTG
*
634380 AGGTGCCGATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTG
1 AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTG
634428 ATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATT
1 ----AGGTGCCAATATGCTGATTCAAGGCCAGCTATATT
634467 CGTCCCCACA
Statistics
Matches: 306, Mismatches: 17, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
48 272 0.89
52 34 0.11
ACGTcount: A:0.30, C:0.17, G:0.26, T:0.27
Consensus pattern (48 bp):
AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTG
Found at i:635173 original size:48 final size:48
Alignment explanation
Indices: 635055--635474 Score: 597
Period size: 48 Copynumber: 8.6 Consensus size: 48
635045 TGATGAAGGC
* * **
635055 GCCAATATGCTGAGTCAAGGCCAGCGATATTGGACTTAAAGACGAAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTG-AGGT
* * * * * * *
635104 GCCAATGTGTTGAGTCAATGCCAGCGACATTGGACTTAAAGATGAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGT
* * * * *
635152 GCGAATATGCTGATTCAATGCCAACTACATTCGACTTAAAGGTGAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGT
*
635200 GCCAATATGCTGATTCAAGACCAGCTATATTGGACTTAAAGGTGAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGT
* *
635248 GCCAATATACTGATTCAAGGCCAACTATATTGGACTTAAAGGTGAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGT
635296 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGT
*
635344 GCCAATATGCTGATTCAAGGCCAGCTATATTGAACTTAAAGGTGAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGT
*
635392 GCCAATATGCTGATTCAAGGCTAGCTATATTGGACTTAAAGGTGATAAAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTG----AGGT
*
635444 GCCAATATGCTGATTCAAGGCCAACTATATT
1 GCCAATATGCTGATTCAAGGCCAGCTATATT
635475 CGTCCCCACA
Statistics
Matches: 338, Mismatches: 29, Indels: 5
0.91 0.08 0.01
Matches are distributed among these distances:
48 266 0.79
49 39 0.12
52 33 0.10
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.26
Consensus pattern (48 bp):
GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGT
Done.