Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold32
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 5587194
ACGTcount: A:0.26, C:0.15, G:0.16, T:0.26
Warning! 895791 characters in sequence are not A, C, G, or T
File 6 of 33
Found at i:694856 original size:52 final size:49
Alignment explanation
Indices: 694541--694916 Score: 481
Period size: 48 Copynumber: 7.6 Consensus size: 49
694531 TGATGAAGGC
* * * ** *
694541 GCCAATATGTTGAGTCAAGGCCAGCGATATTGGACTTAAAGACGAAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGTAGGT
* * * * * * * * * *
694590 GTCAATGTGTTGAGTCAAGGTCAGCGACATTTGACATAAAGATG-AGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGTAGGT
* * *
694638 GCCAATATGCTGATTCAAGGCCAACTATATTGGACATAAAGGT-CAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGTAGGT
694686 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTG-AGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGTAGGT
*
694734 GCCAATATGCTGATTAAAGGCCAGCTATATTGGACTTAAAGGTG-AGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGTAGGT
694782 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGATAAAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTG-T--AGGT
*
694834 GCAAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGATAAAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTG-T--AGGT
694886 GCCAATATGCTGATTCAAGGCCAGCTATATT
1 GCCAATATGCTGATTCAAGGCCAGCTATATT
694917 CGTCCCCATA
Statistics
Matches: 298, Mismatches: 23, Indels: 9
0.90 0.07 0.03
Matches are distributed among these distances:
48 176 0.59
49 37 0.12
52 85 0.29
ACGTcount: A:0.32, C:0.16, G:0.26, T:0.26
Consensus pattern (49 bp):
GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGTAGGT
Found at i:695622 original size:48 final size:48
Alignment explanation
Indices: 695506--695781 Score: 354
Period size: 48 Copynumber: 5.6 Consensus size: 48
695496 TGATGAAAGC
* * * *
695506 GCCAATATGCTGAGTCAAGGACAGCGATAATGGACTTAAAGACGAAGGT
1 GCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATG-AGGT
* * * *
695555 GCCAATGTGTTGAGTCAAGGCCAGCGACATTGGACTTAAAGATGAGGT
1 GCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAGGT
* * * *
695603 GCCAATATGCTGATTCAAGGCCAACTATATTAGACTTAAAGGTGAGGT
1 GCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAGGT
* *
695651 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGT
1 GCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAGGT
* *
695699 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGATAAAGGT
1 GCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAA---GAT-GAGGT
*
695751 GCCAATATGCTGATTCAAGGCCAGCTATATT
1 GCCAATATGCTGATTCAAGGCCAGCGATATT
695782 CGTCCCCACA
Statistics
Matches: 205, Mismatches: 18, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
48 130 0.63
49 38 0.19
51 2 0.01
52 35 0.17
ACGTcount: A:0.32, C:0.17, G:0.26, T:0.25
Consensus pattern (48 bp):
GCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAGGT
Found at i:695685 original size:96 final size:97
Alignment explanation
Indices: 695506--695781 Score: 392
Period size: 96 Copynumber: 2.8 Consensus size: 97
695496 TGATGAAAGC
* * * * ** * * *
695506 GCCAATATGCTGAGTCAAGGACAGCGATAATGGACTTAAAGACGAAGGTGCCAATGTGTTGAGTC
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAAGGTGCCAATATGCTGATTC
* *
695571 AAGGCCAGCGACATTGGACTTAAAGATGAGGT
66 AAGGCCAGCTATATTGGACTTAAAGATGAGGT
* *
695603 GCCAATATGCTGATTCAAGGCCAACTATATTAGACTTAAAGGTG-AGGTGCCAATATGCTGATTC
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAAGGTGCCAATATGCTGATTC
*
695667 AAGGCCAGCTATATTGGACTTAAAGGTGAGGT
66 AAGGCCAGCTATATTGGACTTAAAGATGAGGT
695699 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGATAAAGGTGCCAATATGCTGA
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTG---AAGGTGCCAATATGCTGA
695764 TTCAAGGCCAGCTATATT
63 TTCAAGGCCAGCTATATT
695782 CGTCCCCACA
Statistics
Matches: 159, Mismatches: 16, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
96 88 0.55
97 36 0.23
100 35 0.22
ACGTcount: A:0.32, C:0.17, G:0.26, T:0.25
Consensus pattern (97 bp):
GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAAGGTGCCAATATGCTGATTC
AAGGCCAGCTATATTGGACTTAAAGATGAGGT
Found at i:696485 original size:48 final size:49
Alignment explanation
Indices: 696361--697087 Score: 949
Period size: 49 Copynumber: 15.0 Consensus size: 49
696351 TTTTAAAAAT
* * * * * *
696361 GATGAAGGCGCTAATATGCTGAGTGAAGGCCTG-TGATATTAGACTTAAA
1 GATGAAGGTGCCAATATGCTGATTCAAGGCCAGCT-ATATTGGACTTAAA
* * * * * * *
696410 GACGAAGGTGCCAATGTGTTGAGTCAAGGCCAGCGACATTGGACATAAA
1 GATGAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
*
696459 GATG-AGGTGCCAATATGCTGATTCAAGGCCAACTATATTGGACTTAAA
1 GATGAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
*
696507 GGTG-AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
1 GATGAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
*
696555 GGTG-AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT---
1 GATGAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
* * * *
696600 --T-AATGTGCCAATGTGCTGATTCAAGGCTAGCTACATTGGACTTAAA
1 GATGAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
* * *
696646 GATGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAA
1 GATGAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
* * *
696695 GATGAAGTTGCCAATATGCTGATTCAAGGCCAACTACATTGGACTTAAA
1 GATGAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
* * *
696744 GATGAAGGTGCCAATATGCTGATTTAGGGCCAGCGATATTGGACTTAAA
1 GATGAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
* * *
696793 GGTG-AGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAA
1 GATGAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
* *
696841 GATGAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAA
1 GATGAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
* * *
696890 GATGAAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAA
1 GATGAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
* *
696939 GATGAAGGTGCCAATGTGCTGATTCAAGGCTAGCTATATTGGACTTAAA
1 GATGAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
696988 TG-TG-AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
1 -GATGAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
* *
697036 GGTGATAAAGGTGCCAATATGTTGATTCAAGGCCAGCTATATTGGACTTAAA
1 ---GATGAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
697088 AGAAGATGCC
Statistics
Matches: 611, Mismatches: 53, Indels: 25
0.89 0.08 0.04
Matches are distributed among these distances:
43 38 0.06
48 213 0.35
49 313 0.51
50 3 0.00
51 1 0.00
52 43 0.07
ACGTcount: A:0.31, C:0.17, G:0.27, T:0.26
Consensus pattern (49 bp):
GATGAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
Found at i:696836 original size:195 final size:195
Alignment explanation
Indices: 696266--697087 Score: 1021
Period size: 195 Copynumber: 4.2 Consensus size: 195
696256 AAAAGGATGT
* * * * * * *
696266 CAATATGCTGATTCACGGTCAGCAACAGTTAGACTTGAAGATGAGAAGATTGCCAATGTGCTGAT
1 CAATATGCTGATTCAAGGCCAGCTACA-TTGGACTTAAAGAT--GAAG-GTGCCAATATGCTGAT
* ** * * * * * *
696331 TCAAGGCCAACGGCATTGGGTTTTAAAAATGATGAAGGCGCTAATATGCTGAGTGAAGGCCTGTG
62 TCAAGGCCAACGACATT-GGACTT--AAA-GATGAAGGTGCCAATATGCTGATTCAAGGCCAGCG
* ** * * * *
696396 ATATTAGACTTAAAGACGAAGGTGCCAATGTGTTGAGTCAAGGCCAGCGACATTGGACATAAAGA
123 ATATTGGACTTAAAGGTG-AGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGA
696461 TG-AGGTGC
187 TGAAGGTGC
* * *
696469 CAATATGCTGATTCAAGGCCAACTATATTGGACTTAAAGGTG-AGGTGCCAATATGCTGATTCAA
1 CAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATTCAA
* * * * *
696533 GGCCAGCTATATTGGACTTAAAGGTG-AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGA
66 GGCCAACGACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGA
* *
696597 CTTTAA--T---GTGCCAATGTGCTGATTCAAGGCTAGCTACATTGGACTTAAAGATGAAGGTGC
131 CTTAAAGGTGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* * *
696657 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAAGTTGCCAATATGCTGATTCAA
1 CAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATTCAA
* * *
696722 GGCCAACTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATTTAGGGCCAGCGATATTGGA
66 GGCCAACGACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGA
696787 CTTAAAGGTGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
131 CTTAAAGGTGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* *
696852 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATGTGCTGATTCAA
1 CAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATTCAA
* * * *
696917 GGCCAGCGACATTGGACTTAAAGATGAAGGTGCCAATGTGCTGATTCAAGGCTAGCTATATTGGA
66 GGCCAACGACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGA
* * * *
696982 CTTAAATGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGATAAAGG
131 CTTAAAGGTGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAA---GATGAAGG
697047 TGC
193 TGC
* *
697050 CAATATGTTGATTCAAGGCCAGCTATATTGGACTTAAA
1 CAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAA
697088 AGAAGATGCC
Statistics
Matches: 545, Mismatches: 63, Indels: 27
0.86 0.10 0.04
Matches are distributed among these distances:
187 41 0.08
188 43 0.08
189 44 0.08
190 40 0.07
192 1 0.00
193 35 0.06
194 3 0.01
195 226 0.41
197 4 0.01
198 72 0.13
199 2 0.00
200 1 0.00
202 11 0.02
203 22 0.04
ACGTcount: A:0.31, C:0.17, G:0.26, T:0.26
Consensus pattern (195 bp):
CAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATTCAA
GGCCAACGACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGA
CTTAAAGGTGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
Found at i:698553 original size:1 final size:1
Alignment explanation
Indices: 698549--698671 Score: 84
Period size: 1 Copynumber: 123.0 Consensus size: 1
698539 TTTGTTGTTG
* * * * * * * * *
698549 TTTTTTTTGTTTGTTTGTTTTCTTTTTTGTTTTTGTTTTTGTTTTTGTTTTTTTTCTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* * * * * * * * *
698614 CTCTCTTTTTTTTTTGTTTTTTGTTGTTTTTTTTGTTTTTTTTTTCTTTTTTGTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
698672 AGAGGACGCC
Statistics
Matches: 86, Mismatches: 36, Indels: 0
0.70 0.30 0.00
Matches are distributed among these distances:
1 86 1.00
ACGTcount: A:0.00, C:0.05, G:0.10, T:0.85
Consensus pattern (1 bp):
T
Found at i:698558 original size:12 final size:11
Alignment explanation
Indices: 698537--698670 Score: 105
Period size: 12 Copynumber: 11.5 Consensus size: 11
698527 ATCCGGACCC
698537 TTTTTGTTGTTGT
1 TTTTTGTT-TT-T
*
698550 TTTTT-TTGTT
1 TTTTTGTTTTT
*
698560 TGTTTGTTTTCT
1 TTTTTGTTTT-T
698572 TTTTTGTTTTT
1 TTTTTGTTTTT
698583 GTTTTTGTTTTT
1 -TTTTTGTTTTT
698595 GTTTTT-TTTCTT
1 -TTTTTGTTT-TT
698607 TTTTT-TTCTCTCT
1 TTTTTGTT-T-T-T
698620 TTTTT-TTTTGT
1 TTTTTGTTTT-T
698631 TTTTTGTTGTTT
1 TTTTTGTT-TTT
698643 TTTTTGTTTTT
1 TTTTTGTTTTT
*
698654 TTTTTCTTTTT
1 TTTTTGTTTTT
698665 TGTTTT
1 T-TTTT
698671 TAGAGGACGC
Statistics
Matches: 106, Mismatches: 6, Indels: 19
0.81 0.05 0.15
Matches are distributed among these distances:
10 5 0.05
11 36 0.34
12 50 0.47
13 15 0.14
ACGTcount: A:0.00, C:0.04, G:0.11, T:0.84
Consensus pattern (11 bp):
TTTTTGTTTTT
Found at i:698600 original size:44 final size:43
Alignment explanation
Indices: 698538--698671 Score: 180
Period size: 47 Copynumber: 3.0 Consensus size: 43
698528 TCCGGACCCT
698538 TTTTGTTGTTGTTTTTTTTGTTTGTTTGTTTTCTTTTTTGTTTTTG
1 TTTT-TTGTTGTTTTTTTTGTTT-TTT-TTTTCTTTTTTGTTTTTG
* *
698584 TTTTTGTTTTTGTTTTTTTTCTTTTTTTTTCTCTCTTTTT-TTTTTG
1 -TTTT-TTGTTGTTTTTTTTGTTTTTTTTT-TCT-TTTTTGTTTTTG
698630 TTTTTTGTTGTTTTTTTTGTTTTTTTTTTCTTTTTTGTTTTT
1 TTTTTTGTTGTTTTTTTTGTTTTTTTTTTCTTTTTTGTTTTT
698672 AGAGGACGCC
Statistics
Matches: 80, Mismatches: 4, Indels: 10
0.85 0.04 0.11
Matches are distributed among these distances:
42 5 0.06
43 8 0.10
44 22 0.28
45 7 0.09
46 12 0.15
47 26 0.32
ACGTcount: A:0.00, C:0.04, G:0.11, T:0.84
Consensus pattern (43 bp):
TTTTTTGTTGTTTTTTTTGTTTTTTTTTTCTTTTTTGTTTTTG
Found at i:698609 original size:53 final size:51
Alignment explanation
Indices: 698537--698669 Score: 155
Period size: 53 Copynumber: 2.5 Consensus size: 51
698527 ATCCGGACCC
* *
698537 TTTTTGTTGTTGTTTTTTTTGTTTGTTTGTTTTCTTTTTTG-TTTTTGTT-TTT
1 TTTTTGTT-TT-TTTTTTTTTTTTGTTTCTTTT-TTTTTTGTTTTTTGTTGTTT
698589 GTTTTTGTTTTTTTTCTTTTTTTT-TCTCTCTTTTTTTTTTGTTTTTTGTTGTTT
1 -TTTTTGTTTTTTTT-TTTTTTTTGT-T-TCTTTTTTTTTTGTTTTTTGTTGTTT
698643 TTTTTGTTTTTTTTTTCTTTTTTGTTT
1 TTTTTGTTTTTTTTTT-TTTTTTGTTT
698670 TTAGAGGACG
Statistics
Matches: 71, Mismatches: 2, Indels: 15
0.81 0.02 0.17
Matches are distributed among these distances:
51 5 0.07
52 20 0.28
53 42 0.59
54 4 0.06
ACGTcount: A:0.00, C:0.05, G:0.11, T:0.84
Consensus pattern (51 bp):
TTTTTGTTTTTTTTTTTTTTTTGTTTCTTTTTTTTTTGTTTTTTGTTGTTT
Found at i:701226 original size:13 final size:13
Alignment explanation
Indices: 701208--701233 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
701198 CAATTTTTTG
701208 TGTATCGATACAT
1 TGTATCGATACAT
701221 TGTATCGATACAT
1 TGTATCGATACAT
701234 ATTTTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:701244 original size:32 final size:33
Alignment explanation
Indices: 701188--701251 Score: 112
Period size: 32 Copynumber: 2.0 Consensus size: 33
701178 TACAAGCCAA
*
701188 TGTATCGATACAATTTTTTGTGTATCGATACAT
1 TGTATCGATACAATATTTTGTGTATCGATACAT
701221 TGTATCGATAC-ATATTTTGTGTATCGATACA
1 TGTATCGATACAATATTTTGTGTATCGATACA
701252 AGTTTGGCTA
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
32 19 0.63
33 11 0.37
ACGTcount: A:0.28, C:0.12, G:0.16, T:0.44
Consensus pattern (33 bp):
TGTATCGATACAATATTTTGTGTATCGATACAT
Found at i:701245 original size:19 final size:19
Alignment explanation
Indices: 701188--701251 Score: 68
Period size: 19 Copynumber: 3.6 Consensus size: 19
701178 TACAAGCCAA
*
701188 TGTATCGATACAATTTTTTG
1 TGTATCGATAC-ATATTTTG
701208 TGTATCGATAC--A---T-
1 TGTATCGATACATATTTTG
701221 TGTATCGATACATATTTTG
1 TGTATCGATACATATTTTG
701240 TGTATCGATACA
1 TGTATCGATACA
701252 AGTTTGGCTA
Statistics
Matches: 37, Mismatches: 1, Indels: 13
0.73 0.02 0.25
Matches are distributed among these distances:
13 11 0.30
14 1 0.03
15 1 0.03
18 1 0.03
19 12 0.32
20 11 0.30
ACGTcount: A:0.28, C:0.12, G:0.16, T:0.44
Consensus pattern (19 bp):
TGTATCGATACATATTTTG
Found at i:701348 original size:20 final size:20
Alignment explanation
Indices: 701303--701358 Score: 69
Period size: 20 Copynumber: 2.8 Consensus size: 20
701293 ACATCTTTTT
*
701303 CATGTATCGATACATTGCAA
1 CATGTATCGATACTTTGCAA
701323 CATGTATCGATACTTTG-AA
1 CATGTATCGATACTTTGCAA
* *
701342 CTGTGTATTGATACTTT
1 C-ATGTATCGATACTTT
701359 TAAGGGTTTT
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
19 3 0.09
20 29 0.91
ACGTcount: A:0.29, C:0.16, G:0.16, T:0.39
Consensus pattern (20 bp):
CATGTATCGATACTTTGCAA
Found at i:709790 original size:13 final size:13
Alignment explanation
Indices: 709772--709799 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
709762 CAAAGATTAG
709772 TGTATCGATACAA
1 TGTATCGATACAA
709785 TGTATCGATACAA
1 TGTATCGATACAA
709798 TG
1 TG
709800 AGTAATGTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:709793 original size:33 final size:33
Alignment explanation
Indices: 709751--709816 Score: 105
Period size: 33 Copynumber: 2.0 Consensus size: 33
709741 ATTTGCCTGC
* *
709751 ATGTATCGATACAAAGATTAGTGTATCGATACA
1 ATGTATCGATACAAAGAGTAATGTATCGATACA
*
709784 ATGTATCGATACAATGAGTAATGTATCGATACA
1 ATGTATCGATACAAAGAGTAATGTATCGATACA
709817 TTTTTTGGCA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.39, C:0.12, G:0.18, T:0.30
Consensus pattern (33 bp):
ATGTATCGATACAAAGAGTAATGTATCGATACA
Found at i:709880 original size:32 final size:32
Alignment explanation
Indices: 709838--709900 Score: 99
Period size: 32 Copynumber: 2.0 Consensus size: 32
709828 TAGCCAATTA
709838 TGTATCGATACAACACCTATGTATCGATACAT
1 TGTATCGATACAACACCTATGTATCGATACAT
* * *
709870 TGTATTGATACAACACTTATGTATGGATACA
1 TGTATCGATACAACACCTATGTATCGATACA
709901 AATAGTTGAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.35, C:0.17, G:0.14, T:0.33
Consensus pattern (32 bp):
TGTATCGATACAACACCTATGTATCGATACAT
Found at i:709898 original size:19 final size:19
Alignment explanation
Indices: 709835--709901 Score: 65
Period size: 19 Copynumber: 3.8 Consensus size: 19
709825 CAGTAGCCAA
709835 TTATGTATCGATACAACAC
1 TTATGTATCGATACAACAC
*
709854 CTATGTATCGAT---ACA-
1 TTATGTATCGATACAACAC
*
709869 -T-TGTATTGATACAACAC
1 TTATGTATCGATACAACAC
*
709886 TTATGTATGGATACAA
1 TTATGTATCGATACAA
709902 ATAGTTGAAT
Statistics
Matches: 39, Mismatches: 3, Indels: 12
0.72 0.06 0.22
Matches are distributed among these distances:
13 8 0.21
14 1 0.03
16 6 0.15
18 1 0.03
19 23 0.59
ACGTcount: A:0.36, C:0.16, G:0.13, T:0.34
Consensus pattern (19 bp):
TTATGTATCGATACAACAC
Found at i:717339 original size:48 final size:48
Alignment explanation
Indices: 717205--717576 Score: 485
Period size: 48 Copynumber: 7.6 Consensus size: 48
717195 TGATGAAGGC
* * * **
717205 GCCAATATGCTGAGTCAAGGCTAG-TGATATTAGACTTAAAGACGAAGGT
1 GCCAATATGCTGATTCAAGGCCAGCT-ATATTGGACTTAAAGGTG-AGGT
* * * * * * * * *
717254 GCCAATGTGTTGAGTCAAAGCCAGCGACATTGGACTTAAAGATCAGGA
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGT
* * *
717302 GCAAATATGCTGATTCAAGGCTAACTATATTGGACTTAAAGGTGAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGT
*
717350 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGGGAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGT
*
717398 GCCAATATGCTGATTCAAGGCCAGCTATATTTGACTTAAAGGTGAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGT
* *
717446 GCCAATATGCTGATTCAAGGTCAGCTATATTGGACTTAAAGGTGGGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGT
717494 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGATAAAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTG----AGGT
*
717546 GCCAATATGCTGATTCAAGGCCAGCTCTATT
1 GCCAATATGCTGATTCAAGGCCAGCTATATT
717577 CGTCCCCACA
Statistics
Matches: 284, Mismatches: 34, Indels: 7
0.87 0.10 0.02
Matches are distributed among these distances:
48 217 0.76
49 34 0.12
52 33 0.12
ACGTcount: A:0.31, C:0.16, G:0.26, T:0.27
Consensus pattern (48 bp):
GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGT
Found at i:718279 original size:48 final size:48
Alignment explanation
Indices: 718159--718535 Score: 504
Period size: 48 Copynumber: 7.8 Consensus size: 48
718149 AAAAATAATG
* * * * *
718159 AAGGCGCCAATATGCTGAGTCAAGGCCAACGATATTGGACGTAAAGACG-
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAG--GT
* * * * * *
718208 AAGGTGCCAATGTGTTGAGTCAAGGCCAGCGACATTGGAGTTAAAGGT
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGT
* * *
718256 AAGGTGCCAATATGTTGATTCAAGGCTAACTATATTGGACTTAAAGGT
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGT
*
718304 GAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGT
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGT
*
718352 GAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGT
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGT
* *
718400 GAGGTGGCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGT
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGT
**
718448 GGGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAT
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA-G-G-T
*
718499 AAAGGTGCCAATATGCTGATTCAAGGCCAACTATATT
1 -AAGGTGCCAATATGCTGATTCAAGGCCAGCTATATT
718536 CGTCCCCACA
Statistics
Matches: 299, Mismatches: 24, Indels: 7
0.91 0.07 0.02
Matches are distributed among these distances:
47 1 0.00
48 223 0.75
49 40 0.13
50 1 0.00
51 1 0.00
52 33 0.11
ACGTcount: A:0.31, C:0.16, G:0.27, T:0.26
Consensus pattern (48 bp):
AAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGT
Found at i:719111 original size:53 final size:52
Alignment explanation
Indices: 718973--719537 Score: 200
Period size: 48 Copynumber: 11.3 Consensus size: 52
718963 ACTAGTACGT
* * * *
718973 TGATTCACGGCCAACGATATTGGGTTTAAAGATGAGAAAAAGGATGTCAATATGC
1 TGATTCAAGGCCAACGACATTGGGTTTAAAGATGAG---AAGAATGCCAATATGC
* * * * * ** *
719028 TGATTCACGGTCAGCAACAATTAGACTTAAAGATGAGAAGAATGCCAATGTGC
1 TGATTCAAGGCCAACGAC-ATTGGGTTTAAAGATGAGAAGAATGCCAATATGC
* * *
719081 TGATTCAAGGCCAACGACATTGGGTTTTAAAAAT-A-ATGAAGGCACCAATATGC
1 TGATTCAAGGCCAACGACATTGGG-TTTAAAGATGAGAAGAATG--CCAATATGC
* * *** * * * *
719134 TGAGTCAAGGCCAACGATATTGGACGTAAAGA--CGAAG-GTGCCAATGTGT
1 TGATTCAAGGCCAACGACATTGGGTTTAAAGATGAGAAGAATGCCAATATGC
* * * ** * *
719183 TCAGTCAAGGCCAGCGACATTGGACTTAAAGGTGAG--G--TGCCAATATGT
1 TGATTCAAGGCCAACGACATTGGGTTTAAAGATGAGAAGAATGCCAATATGC
* * * ** *
719231 TGATTCAAGGCTAACTATATTGGACTTAAAGGTGAG--G--TGCCAATATGC
1 TGATTCAAGGCCAACGACATTGGGTTTAAAGATGAGAAGAATGCCAATATGC
* * * *** *
719279 TGATTCAAGGCCAGCTATATTGGACATAAAGGTGAG--G--TGCCAATATGC
1 TGATTCAAGGCCAACGACATTGGGTTTAAAGATGAGAAGAATGCCAATATGC
* * ** * *
719327 TGATTCAAGGCCAACTATATTGGACTTAAAGGTGAG--G--TGGCAATATGC
1 TGATTCAAGGCCAACGACATTGGGTTTAAAGATGAGAAGAATGCCAATATGC
* * * ** * * *
719375 TGATTCAAGGCCAGCTATATTGGACTTAAAGGTG-G--G-GTGCCAATATGG
1 TGATTCAAGGCCAACGACATTGGGTTTAAAGATGAGAAGAATGCCAATATGC
* * * ** * *
719423 TGATTCAAGGCCAGCTAGATTGGACTTAAAGGTGAG--G--TGGCAATATGC
1 TGATTCAAGGCCAACGACATTGGGTTTAAAGATGAGAAGAATGCCAATATGC
* * ** * * *
719471 TGATTCAAGGCCAACTATATTGGACTTAAAGGTGATAA-AGGTGCCAATATGC
1 TGATTCAAGGCCAACGACATTGGGTTTAAAGATGAGAAGA-ATGCCAATATGC
719523 TGATTCAAGGCCAAC
1 TGATTCAAGGCCAAC
719538 TATATTCGTC
Statistics
Matches: 433, Mismatches: 63, Indels: 31
0.82 0.12 0.06
Matches are distributed among these distances:
47 2 0.00
48 258 0.60
49 37 0.09
51 7 0.02
52 37 0.09
53 63 0.15
55 14 0.03
56 15 0.03
ACGTcount: A:0.33, C:0.16, G:0.26, T:0.25
Consensus pattern (52 bp):
TGATTCAAGGCCAACGACATTGGGTTTAAAGATGAGAAGAATGCCAATATGC
Found at i:719240 original size:48 final size:48
Alignment explanation
Indices: 719125--719543 Score: 586
Period size: 48 Copynumber: 8.6 Consensus size: 48
719115 AATGAAGGCA
* * * **
719125 CCAATATGCTGAGTCAAGGCCAACGATATTGGACGTAAAGACGAAGGTG
1 CCAATATGCTGATTCAAGGCCAACTATATTGGACTTAAAGGTG-AGGTG
* * * * * * *
719174 CCAATGTGTTCAGTCAAGGCCAGCGACATTGGACTTAAAGGTGAGGTG
1 CCAATATGCTGATTCAAGGCCAACTATATTGGACTTAAAGGTGAGGTG
* *
719222 CCAATATGTTGATTCAAGGCTAACTATATTGGACTTAAAGGTGAGGTG
1 CCAATATGCTGATTCAAGGCCAACTATATTGGACTTAAAGGTGAGGTG
* *
719270 CCAATATGCTGATTCAAGGCCAGCTATATTGGACATAAAGGTGAGGTG
1 CCAATATGCTGATTCAAGGCCAACTATATTGGACTTAAAGGTGAGGTG
719318 CCAATATGCTGATTCAAGGCCAACTATATTGGACTTAAAGGTGAGGTG
1 CCAATATGCTGATTCAAGGCCAACTATATTGGACTTAAAGGTGAGGTG
* * *
719366 GCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGGGGTG
1 CCAATATGCTGATTCAAGGCCAACTATATTGGACTTAAAGGTGAGGTG
* * *
719414 CCAATATGGTGATTCAAGGCCAGCTAGATTGGACTTAAAGGTGAGGTG
1 CCAATATGCTGATTCAAGGCCAACTATATTGGACTTAAAGGTGAGGTG
*
719462 GCAATATGCTGATTCAAGGCCAACTATATTGGACTTAAAGGTGATAAAGGTG
1 CCAATATGCTGATTCAAGGCCAACTATATTGGACTTAAAGGTG----AGGTG
719514 CCAATATGCTGATTCAAGGCCAACTATATT
1 CCAATATGCTGATTCAAGGCCAACTATATT
719544 CGTCTCCACA
Statistics
Matches: 333, Mismatches: 33, Indels: 5
0.90 0.09 0.01
Matches are distributed among these distances:
48 264 0.79
49 35 0.11
52 34 0.10
ACGTcount: A:0.31, C:0.16, G:0.27, T:0.26
Consensus pattern (48 bp):
CCAATATGCTGATTCAAGGCCAACTATATTGGACTTAAAGGTGAGGTG
Found at i:719412 original size:960 final size:960
Alignment explanation
Indices: 717161--722365 Score: 6481
Period size: 960 Copynumber: 5.3 Consensus size: 960
717151 GAGGGTTTGT
* *
717161 CTGATTCAAGGCCAATGGCATTGGGTTTTAGAAATGATGAAGGCGCCAATATGCTGAGTCAAGGC
1 CTGATTCAAGGCCAACGGCATTGGGTTTTAAAAATGATGAAGGCGCCAATATGCTGAGTCAAGGC
* ** * * *
717226 TAGTGATATTAGACTTAAAGACGAAGGTGCCAATGTGTTGAGTCAAAGCCAGCGACATTGGACTT
66 CAACGATATTGGACTCAAAGACGAAGGTGCCAATGTGTTGAGTCAAGGCCAGCGACATTGGACTT
* * *
717291 AAAGATCAGGAGCAAATATGCTGATTCAAGGCTAACTATATTGGACTTAAAGGTGAGGTGCCAAT
131 AAAGATGAGGTGCCAATATGCTGATTCAAGGCTAACTATATTGGACTTAAAGGTGAGGTGCCAAT
*
717356 ATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGGGAGGTGCCAATATGCTGATTCAAGGCCA
196 ATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCA
* *
717421 GCTATATTTGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGTCAGCTATATTGGACTTAAA
261 GCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
717486 GGTGGGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGATAAAGGTGCCAA
326 GGTGGGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGATAAAGGTGCCAA
* * *
717551 TATGCTGATTCAAGGCCAGCTCTATTCGTCCCCACATATGTCGAATCCTCCACCTACTAGCTAGG
391 TATGCTGATTCAAGGCCAACTATATTCGTCCCCACATATGTCGAATCCTCTACCTACTAGCTAGG
* ** * *
717616 CCCTAAATTGTTGAAAATTAGCCCAGACAAGATGAGGTGTCTACAGCTGCCCCACTTTGGCCGTT
456 CCCTAAATTGTTGAAAATTGGCCTGGACAAAATGAGGTGTCTACAGCTGCCCCTCTTTGGCCGTT
* *
717681 TCTGAGTATCAGGAACAGGCCAAAGACAAATAGGCACCATTTTGTCTACGGCCGCATGTCATGAC
521 TCTGAGTATCAGGAACAGGCCAAAGACAAATAGGCACCATTTTGTCTGCGGCTGCATGTCATGAC
*
717746 CTTTGGTGATTAATGCTTCGCCGTGATGAAGAGTGCATTGGCGACGGTTCCGTTGGAAAAATGAG
586 CTTTGGTGATTAATGCTTCGCCGTGATGAAGAGTGCATTGGCGACGGTTCCGATGGAAAAATGAG
717811 TTTGTAGGGTTTGTCCTCCCTACTAGGTTTTGGAATTTTCTAAGGCTTGACCTCCTTAGATAGGT
651 TTTGTAGGGTTTGTCCTCCCTACTAGGTTTTGGAATTTTCTAAGGCTTGACCTCCTTAGATAGGT
717876 GTAGATTGGTGTAGAGTTTGGAACGGATTTTGGAAGAATATGGTCAGTATTTTGCAATGTGCCAC
716 GTAGATTGGTGTAGAGTTTGGAACGGATTTTGGAAGAATATGGTCAGTATTTTGCAATGTGCCAC
* *
717941 TGTGCAGACTTAAGGCCTGCCACACT-GACTTAAAGATGATGAGGATTAAGAGTGATAAAAGGAC
781 TGTGCAGACTCAAGGCCTGCCACACTAGACTTAAAGATGATGAGGATGAAGAGTGATAAAAGGAC
* * *
718005 TAGTACGTTGATTCACAGCCAACGATATTGGGTTTAAAGATGAGAAAAAGGATGTCAATAAGCTG
846 CAGTACGTTGATTCACGGCCAACGATATTGGGTTTAAAGATGAGAAAAAGGATGTCAATATGCTG
*
718070 ATTCACGGTCAGCAACAGTTAGACTTAAAGATGAGAAGAATGCCAATGTG
911 ATTCACGGTCAGCAACAGTTAGACTTGAAGATGAGAAGAATGCCAATGTG
*
718120 CTGATTCAAGGCCAACGGCATTGGGTTTTAAAAATAATGAAGGCGCCAATATGCTGAGTCAAGGC
1 CTGATTCAAGGCCAACGGCATTGGGTTTTAAAAATGATGAAGGCGCCAATATGCTGAGTCAAGGC
*
718185 CAACGATATTGGACGT-AAAGACGAAGGTGCCAATGTGTTGAGTCAAGGCCAGCGACATTGGAGT
66 CAACGATATTGGAC-TCAAAGACGAAGGTGCCAATGTGTTGAGTCAAGGCCAGCGACATTGGACT
* * *
718249 TAAAGGTAAGGTGCCAATATGTTGATTCAAGGCTAACTATATTGGACTTAAAGGTGAGGTGCCAA
130 TAAAGATGAGGTGCCAATATGCTGATTCAAGGCTAACTATATTGGACTTAAAGGTGAGGTGCCAA
718314 TATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCC
195 TATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCC
*
718379 AGCTATATTGGACTTAAAGGTGAGGTGGCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAA
260 AGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAA
718444 AGGTGGGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGATAAAGGTGCCA
325 AGGTGGGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGATAAAGGTGCCA
718509 ATATGCTGATTCAAGGCCAACTATATTCGTCCCCACATATGTCGAATCCTCTACCTACTAGCTAG
390 ATATGCTGATTCAAGGCCAACTATATTCGTCCCCACATATGTCGAATCCTCTACCTACTAGCTAG
718574 GCCCTAAATTGTTGAAAATTGGCCTGGACAAAATGAGGTGTCTACAGCTGCCCCTCTTTGGCCGT
455 GCCCTAAATTGTTGAAAATTGGCCTGGACAAAATGAGGTGTCTACAGCTGCCCCTCTTTGGCCGT
718639 TTCTGAGTATCAGGAACAGGCCAAAGACAAATAGGCACCATTTTGTCTGCGGCTGCATGTCATGA
520 TTCTGAGTATCAGGAACAGGCCAAAGACAAATAGGCACCATTTTGTCTGCGGCTGCATGTCATGA
*
718704 CCTTTGGTGATTAATGCTTCGCCGTGATGAAGAGTGCATTGGCGACGGTTCCGTTGGAAAAATGA
585 CCTTTGGTGATTAATGCTTCGCCGTGATGAAGAGTGCATTGGCGACGGTTCCGATGGAAAAATGA
718769 GTTTGTAGGGTTTGTCCTCCCTACTAGGTTTTGGAATTTTCTAAGGCTTGACCTCCTTAGATAGG
650 GTTTGTAGGGTTTGTCCTCCCTACTAGGTTTTGGAATTTTCTAAGGCTTGACCTCCTTAGATAGG
*
718834 TGTAGATTGGTGTAGAGTTTGGAACGGATTTTGGAAGAATATGGTTAGTATTTTGCAATGTGCCA
715 TGTAGATTGGTGTAGAGTTTGGAACGGATTTTGGAAGAATATGGTCAGTATTTTGCAATGTGCCA
* * *
718899 CTGTGCAGACTCAAGGCCTGCCACACTGGACTTAAAGATGATGAGGATTAAGAGTGATAAACGGA
780 CTGTGCAGACTCAAGGCCTGCCACACTAGACTTAAAGATGATGAGGATGAAGAGTGATAAAAGGA
*
718964 CTAGTACGTTGATTCACGGCCAACGATATTGGGTTTAAAGATGAGAAAAAGGATGTCAATATGCT
845 CCAGTACGTTGATTCACGGCCAACGATATTGGGTTTAAAGATGAGAAAAAGGATGTCAATATGCT
* *
719029 GATTCACGGTCAGCAACAATTAGACTTAAAGATGAGAAGAATGCCAATGTG
910 GATTCACGGTCAGCAACAGTTAGACTTGAAGATGAGAAGAATGCCAATGTG
* * *
719080 CTGATTCAAGGCCAACGACATTGGGTTTTAAAAATAATGAAGGCACCAATATGCTGAGTCAAGGC
1 CTGATTCAAGGCCAACGGCATTGGGTTTTAAAAATGATGAAGGCGCCAATATGCTGAGTCAAGGC
*
719145 CAACGATATTGGACGT-AAAGACGAAGGTGCCAATGTGTTCAGTCAAGGCCAGCGACATTGGACT
66 CAACGATATTGGAC-TCAAAGACGAAGGTGCCAATGTGTTGAGTCAAGGCCAGCGACATTGGACT
* *
719209 TAAAGGTGAGGTGCCAATATGTTGATTCAAGGCTAACTATATTGGACTTAAAGGTGAGGTGCCAA
130 TAAAGATGAGGTGCCAATATGCTGATTCAAGGCTAACTATATTGGACTTAAAGGTGAGGTGCCAA
*
719274 TATGCTGATTCAAGGCCAGCTATATTGGACATAAAGGTGAGGTGCCAATATGCTGATTCAAGGCC
195 TATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCC
* *
719339 AACTATATTGGACTTAAAGGTGAGGTGGCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAA
260 AGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAA
* * *
719404 AGGTGGGGTGCCAATATGGTGATTCAAGGCCAGCTAGATTGGACTTAAAGGTG----AGGTGGCA
325 AGGTGGGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGATAAAGGTGCCA
** ** * ** * ** *
719465 ATATGCTGATTCAAGGCCAACTATATT-GGACTTAAAGGTGAT-AAAGGTGCCAATA--TGCTGA
390 ATATGCTGATTCAAGGCCAACTATATTCGTCCCCACATATG-TCGAA--T-CCTCTACCTACT-A
* * * ** * * **** ** *
719526 TTCAAGGCCAACTATATTCGTCTCCACATAT-G--T---C-GAATCCTCTACCTACTAGCTAGGC
450 -GCTAGGCC--CTAAATT-GT-TGAAAAT-TGGCCTGGACAAAATGAGGTGTCTAC-AGCT-GCC
* * **** * * * ***** ** *
719584 CTTAAATTGTTGAAAATTGGCCT-AG-A-CA-AAATGAGG-TGTCTACAGCT--GC-CCCTCTTT
507 CCT---CT-TTGGCCGTT--TCTGAGTATCAGGAA-CAGGCCAAAGACAAATAGGCACCAT-TTT
* * * * * ** * ** * *
719641 GGTCGTTTCTGAGTATCAGGAACAGGCCAAAGACAAATAGGCACCATT-TTGTCTGCGGCCGCAT
564 -GTC--TGC-G-G---C-TG--CATGTC-ATGAC-CTTTGG--TGATTAATG-CTTC-GCCG--T
* * * * * *** ** ** *** * ***
719705 G-TCATGA--CCTTTGGTGATTATTGCTTCGCCGTGATGAA-GAGTGCATTGGCGACGGT--T-C
610 GATGAAGAGTGCATTGGCGACGGTT-C--CGATG-GAAAAATGAGTTTGTAGG-GTTTGTCCTCC
* *** * * * * *
719763 CGA-T-GGAAAAAT-G-AGTTTGTAGGGTTTGTCCTCCCTACTAGGTTTTGGAATTTTCTAAGGC
670 CTACTAGG--TTTTGGAATTTTCTAAGGCTTGACCT-CCT--TA-------G-A-----T-AGG-
*
719824 TTGACCTCCTTAGATAGGTGTAGAGTTTGGAACGGATTTTGGAAGAATATGGTCAGTATTTTGCA
715 -TG-------TAGATTGGTGTAGAGTTTGGAACGGATTTTGGAAGAATATGGTCAGTATTTTGCA
* *
719889 ATGTGCCACTGTGCAGATTCAAGGCCTGCCACACTAGACTTAAAGATGATGAAGATGAAGAGTGA
772 ATGTGCCACTGTGCAGACTCAAGGCCTGCCACACTAGACTTAAAGATGATGAGGATGAAGAGTGA
*
719954 TAAAAGGACCAGTATGTTGATTCACGGCCAACGATATTGGGTTTAAAGATGAGAAAAAGGATGTC
837 TAAAAGGACCAGTACGTTGATTCACGGCCAACGATATTGGGTTTAAAGATGAGAAAAAGGATGTC
* * *
720019 AATATGCTGATTCACGGTCGGCAACAGTTAGACTTGAAGATGAAAAGAATTG-CAAAGTG
902 AATATGCTGATTCACGGTCAGCAACAGTTAGACTTGAAGATGAGAAGAA-TGCCAATGTG
*
720078 CTGATTCAAGGCCAACGGCATTGGGTTTTAAAAATGAGGAAGGCGCCAATATGCTGAGTCAAGGC
1 CTGATTCAAGGCCAACGGCATTGGGTTTTAAAAATGATGAAGGCGCCAATATGCTGAGTCAAGGC
720143 CAACGATATTGGACTCAAAGACGAAGGTGCCAATGTGTTGAGTCAAGGCCAGCGACATTGGACTT
66 CAACGATATTGGACTCAAAGACGAAGGTGCCAATGTGTTGAGTCAAGGCCAGCGACATTGGACTT
*
720208 AAAGATGAGGTGCCAATATGCTGATTCAAGGCTAACTATATTGGACTTTAAGGTGAGGTGCCAAT
131 AAAGATGAGGTGCCAATATGCTGATTCAAGGCTAACTATATTGGACTTAAAGGTGAGGTGCCAAT
* * *
720273 ATGCTGATTCAAGGCCAACTATATTGGACTTAAAGGGGAGGTGGCAATATGCTGATTCAAGGCCA
196 ATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCA
* * *
720338 CCTATATTGCACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAT
261 GCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
*
720403 GGTGGGGTGACAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGATAAAGGTGCCAA
326 GGTGGGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGATAAAGGTGCCAA
* *
720468 TATGCTGATTCAAGGCCAACTACATTCGTCCCCACATATGTCGAATCCTCCACCTACTAGCTAGG
391 TATGCTGATTCAAGGCCAACTATATTCGTCCCCACATATGTCGAATCCTCTACCTACTAGCTAGG
* * *
720533 CCCTAAATTATTGAAAATTGGCCCGAACAAAATGAGGTGTCTACAGCTGCCCCTCTTTGGCCGTT
456 CCCTAAATTGTTGAAAATTGGCCTGGACAAAATGAGGTGTCTACAGCTGCCCCTCTTTGGCCGTT
* *
720598 TCTAAGTATCGGGAACAGGCCAAAGACAAATAGGCACCATTTTGTCTGCGG-TCGCATGTCATGA
521 TCTGAGTATCAGGAACAGGCCAAAGACAAATAGGCACCATTTTGTCTGCGGCT-GCATGTCATGA
* * * *
720662 CCTTTGGTGATTAATGCTTCACCGTGATGAAGAGTGCGTTGGTGACGGTTCCGATGGAAAATTGA
585 CCTTTGGTGATTAATGCTTCGCCGTGATGAAGAGTGCATTGGCGACGGTTCCGATGGAAAAATGA
* *
720727 GTTTGTAGGGTTTGTCCACCCTACTAGGTTTTGGAATTTTCTAAGGCTTGACCTCTTTAGATAGG
650 GTTTGTAGGGTTTGTCCTCCCTACTAGGTTTTGGAATTTTCTAAGGCTTGACCTCCTTAGATAGG
720792 TGTAGATTGGTGTAGAGTTTGGAACGGATTTTGGAAGAATATGGTCAGTATTTTGCAATGT-CGC
715 TGTAGATTGGTGTAGAGTTTGGAACGGATTTTGGAAGAATATGGTCAGTATTTTGCAATGTGC-C
* *
720856 ACTGTGCAGACTCAAGGCCTGCCACACTGGACTTCAAGATGATGAGGATGAAGAGTGATAAAAGG
779 ACTGTGCAGACTCAAGGCCTGCCACACTAGACTTAAAGATGATGAGGATGAAGAGTGATAAAAGG
* *
720921 ACCAGTACGTTTATTCACGACCAACGATATTGGGTTTAAAGATGAGAAAAAGGAT-TCCAATATG
844 ACCAGTACGTTGATTCACGGCCAACGATATTGGGTTTAAAGATGAGAAAAAGGATGT-CAATATG
*
720985 CCGATTCACGGTCAGCAACAGTTAGACTTGAAGATGAGAAGAATGCCAATGTG
908 CTGATTCACGGTCAGCAACAGTTAGACTTGAAGATGAGAAGAATGCCAATGTG
*
721038 CTGATTCAAGGCCAATGGCATTGGGTTTTAAAAATGATGAAGGCGCCAATATGCTGAGTCAAGGC
1 CTGATTCAAGGCCAACGGCATTGGGTTTTAAAAATGATGAAGGCGCCAATATGCTGAGTCAAGGC
* *
721103 CAGCAATATTGGACTCAAAGACGAAGGTGCCAATGTGTTGAGTCAAGGCCAGCGACATTGGACTT
66 CAACGATATTGGACTCAAAGACGAAGGTGCCAATGTGTTGAGTCAAGGCCAGCGACATTGGACTT
* * *
721168 AAAGATGTGGTGTCAATATGCTGATTCAAGGCCAACTATATTGGACTTAAAGGTGAGGTGCCAAT
131 AAAGATGAGGTGCCAATATGCTGATTCAAGGCTAACTATATTGGACTTAAAGGTGAGGTGCCAAT
721233 ATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCA
196 ATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCA
721298 GCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
261 GCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
* * * *
721363 GGTGAGGTGGCAATATGCTGATTCAAGCCCAGCTATATTGGACTTAAAGGTG----GGGTGCCAA
326 GGTGGGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGATAAAGGTGCCAA
** ** * ** * ** *
721424 TATGCTGATTCAAGGCCAACTATATT-GGACTTAAAGGTGAT-AAAGGTGCCAATA--TGCTGAT
391 TATGCTGATTCAAGGCCAACTATATTCGTCCCCACATATG-TCGAA--T-CCTCTACCTACT-A-
* * * ** * * ** ** * ** *
721485 TCAAGGCCAACTATATTCGTCCCCACATATGTCGAATCCTCTACCTACTAGCTAGG-CCCTA-AA
450 GCTAGGCC--CTAAATT-GT--TGA-AAAT-T-G--GCCTGGACAAAAT-G--AGGTGTCTACAG
* ******* ** * ** * **
721548 TTGTTGAAAATTGGCCCG-GACAAAATGAGGTGTCTACAGCTGCCCCTCTTTGGTCGTTTCGGAG
502 CTGCCCCTCTTTGG-CCGTTTC----TGA---GTAT-CAG--G---AAC--AGG-C----CAAAG
* * ** * * ** *** *
721612 TATCAGGAACAGGCCAAAGACAAATAGGCACCATTTTGTC-TG-CAGCCGCATGTCATGACCTTT
546 -A-CA--AATAGG-C--A-CCATTTTGTCTGC-GGCTG-CATGTCA---T--------GACCTTT
721675 GGTGATTAATGCTTCGCCGTGATGAAGAGTGCATTGGCGACGGTTCCGATGGAAAAATGAGTTTG
590 GGTGATTAATGCTTCGCCGTGATGAAGAGTGCATTGGCGACGGTTCCGATGGAAAAATGAGTTTG
721740 TAGGGTTTGTCCTCCCTACTAGGTTTTGGAATTTTCTAAGGCTTGACCTCCTTAGATAGGTGTAG
655 TAGGGTTTGTCCTCCCTACTAGGTTTTGGAATTTTCTAAGGCTTGACCTCCTTAGATAGGTGTAG
*
721805 ATTGGTGTAGAGTTTGGAACGGATTTTGGAAGAATATGGTCAGTATTTTGCAGTGTGCCACTGTG
720 ATTGGTGTAGAGTTTGGAACGGATTTTGGAAGAATATGGTCAGTATTTTGCAATGTGCCACTGTG
*
721870 CAGATTCAAGGCCTGCCACACTAGACTTAAAGATGATGAGGATGAAGAGTGATAAAAGGACCAGT
785 CAGACTCAAGGCCTGCCACACTAGACTTAAAGATGATGAGGATGAAGAGTGATAAAAGGACCAGT
*
721935 ATGTTGATTCACGGCCAACGATATTGGGTTTAAAGATGAGAAAAAGGAT-TCCAATATGCTGATT
850 ACGTTGATTCACGGCCAACGATATTGGGTTTAAAGATGAGAAAAAGGATGT-CAATATGCTGATT
721999 CACGGTCAGCAACAGTTAGACTTGAAGATGAGAAGAATGCCAATGTG
914 CACGGTCAGCAACAGTTAGACTTGAAGATGAGAAGAATGCCAATGTG
*
722046 CTGATTCAAGGCCAATGGCATTGGGTTTTAAAAATGATGAAGGCGCCAATATGCTGAGTCAAGGC
1 CTGATTCAAGGCCAACGGCATTGGGTTTTAAAAATGATGAAGGCGCCAATATGCTGAGTCAAGGC
* *
722111 CAGCAATATTGGACTCAAAGACGAAGGTGCCAATGTGTTGAGTCAAGGCCAGCGACATTGGACTT
66 CAACGATATTGGACTCAAAGACGAAGGTGCCAATGTGTTGAGTCAAGGCCAGCGACATTGGACTT
* *
722176 AAAGATGAGGTGTCAATATGCTGATTCAAGGCCAACTATATTGGACTTAAAGGTGAGGTGCCAAT
131 AAAGATGAGGTGCCAATATGCTGATTCAAGGCTAACTATATTGGACTTAAAGGTGAGGTGCCAAT
* *
722241 ATGCTGATTCAAGGCCAGCTATATTGGACTTAATGGTGGGGTGCCAATATGCTGATTCAAGGCCA
196 ATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCA
*
722306 GCTATATTAGACTTAAAGGTGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATT
261 GCTATATTGGACTTAAAGGTG----AGGTGCCAATATGCTGATTCAAGGCCAGCTATATT
722366 CGTCCCCACA
Statistics
Matches: 3706, Mismatches: 357, Indels: 313
0.85 0.08 0.07
Matches are distributed among these distances:
955 16 0.00
956 83 0.02
957 12 0.00
958 28 0.01
959 781 0.21
960 1122 0.30
961 11 0.00
962 12 0.00
963 5 0.00
964 5 0.00
965 1 0.00
966 2 0.00
967 3 0.00
968 6 0.00
969 16 0.00
970 11 0.00
971 6 0.00
972 18 0.00
973 22 0.01
974 9 0.00
975 8 0.00
976 16 0.00
977 9 0.00
979 1 0.00
981 6 0.00
982 14 0.00
983 7 0.00
984 10 0.00
985 21 0.01
986 18 0.00
987 3 0.00
988 5 0.00
989 10 0.00
990 1 0.00
991 5 0.00
993 5 0.00
994 3 0.00
995 4 0.00
996 13 0.00
997 17 0.00
998 598 0.16
999 7 0.00
1000 18 0.00
1001 10 0.00
1002 45 0.01
1003 8 0.00
1008 639 0.17
1009 1 0.00
1012 35 0.01
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.27
Consensus pattern (960 bp):
CTGATTCAAGGCCAACGGCATTGGGTTTTAAAAATGATGAAGGCGCCAATATGCTGAGTCAAGGC
CAACGATATTGGACTCAAAGACGAAGGTGCCAATGTGTTGAGTCAAGGCCAGCGACATTGGACTT
AAAGATGAGGTGCCAATATGCTGATTCAAGGCTAACTATATTGGACTTAAAGGTGAGGTGCCAAT
ATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCA
GCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
GGTGGGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGATAAAGGTGCCAA
TATGCTGATTCAAGGCCAACTATATTCGTCCCCACATATGTCGAATCCTCTACCTACTAGCTAGG
CCCTAAATTGTTGAAAATTGGCCTGGACAAAATGAGGTGTCTACAGCTGCCCCTCTTTGGCCGTT
TCTGAGTATCAGGAACAGGCCAAAGACAAATAGGCACCATTTTGTCTGCGGCTGCATGTCATGAC
CTTTGGTGATTAATGCTTCGCCGTGATGAAGAGTGCATTGGCGACGGTTCCGATGGAAAAATGAG
TTTGTAGGGTTTGTCCTCCCTACTAGGTTTTGGAATTTTCTAAGGCTTGACCTCCTTAGATAGGT
GTAGATTGGTGTAGAGTTTGGAACGGATTTTGGAAGAATATGGTCAGTATTTTGCAATGTGCCAC
TGTGCAGACTCAAGGCCTGCCACACTAGACTTAAAGATGATGAGGATGAAGAGTGATAAAAGGAC
CAGTACGTTGATTCACGGCCAACGATATTGGGTTTAAAGATGAGAAAAAGGATGTCAATATGCTG
ATTCACGGTCAGCAACAGTTAGACTTGAAGATGAGAAGAATGCCAATGTG
Found at i:720238 original size:48 final size:48
Alignment explanation
Indices: 720122--720489 Score: 484
Period size: 48 Copynumber: 7.6 Consensus size: 48
720112 TGAGGAAGGC
* * * **
720122 GCCAATATGCTGAGTCAAGGCCAACGATATTGGACTCAAAGACGAAGGT
1 GCCAATATGCTGATTCAAGGCCAACTATATTGGACTTAAAGGTG-AGGT
* * * * * * *
720171 GCCAATGTGTTGAGTCAAGGCCAGCGACATTGGACTTAAAGATGAGGT
1 GCCAATATGCTGATTCAAGGCCAACTATATTGGACTTAAAGGTGAGGT
* *
720219 GCCAATATGCTGATTCAAGGCTAACTATATTGGACTTTAAGGTGAGGT
1 GCCAATATGCTGATTCAAGGCCAACTATATTGGACTTAAAGGTGAGGT
*
720267 GCCAATATGCTGATTCAAGGCCAACTATATTGGACTTAAAGGGGAGGT
1 GCCAATATGCTGATTCAAGGCCAACTATATTGGACTTAAAGGTGAGGT
* * *
720315 GGCAATATGCTGATTCAAGGCCACCTATATTGCACTTAAAGGTGAGGT
1 GCCAATATGCTGATTCAAGGCCAACTATATTGGACTTAAAGGTGAGGT
* * *
720363 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAATGGTGGGGT
1 GCCAATATGCTGATTCAAGGCCAACTATATTGGACTTAAAGGTGAGGT
* *
720411 GACAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGATAAAGGT
1 GCCAATATGCTGATTCAAGGCCAACTATATTGGACTTAAAGGTG----AGGT
720463 GCCAATATGCTGATTCAAGGCCAACTA
1 GCCAATATGCTGATTCAAGGCCAACTA
720490 CATTCGTCCC
Statistics
Matches: 283, Mismatches: 32, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
48 217 0.77
49 38 0.13
52 28 0.10
ACGTcount: A:0.31, C:0.17, G:0.26, T:0.26
Consensus pattern (48 bp):
GCCAATATGCTGATTCAAGGCCAACTATATTGGACTTAAAGGTGAGGT
Found at i:721211 original size:48 final size:48
Alignment explanation
Indices: 721082--721501 Score: 624
Period size: 48 Copynumber: 8.6 Consensus size: 48
721072 TGATGAAGGC
* * * **
721082 GCCAATATGCTGAGTCAAGGCCAGCAATATTGGACTCAAAGACGAAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTG-AGGT
* * * * * * *
721131 GCCAATGTGTTGAGTCAAGGCCAGCGACATTGGACTTAAAGATGTGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGT
* *
721179 GTCAATATGCTGATTCAAGGCCAACTATATTGGACTTAAAGGTGAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGT
721227 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGT
721275 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGT
721323 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGT
* * *
721371 GGCAATATGCTGATTCAAGCCCAGCTATATTGGACTTAAAGGTGGGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGT
*
721419 GCCAATATGCTGATTCAAGGCCAACTATATTGGACTTAAAGGTGATAAAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTG----AGGT
*
721471 GCCAATATGCTGATTCAAGGCCAACTATATT
1 GCCAATATGCTGATTCAAGGCCAGCTATATT
721502 CGTCCCCACA
Statistics
Matches: 342, Mismatches: 25, Indels: 5
0.92 0.07 0.01
Matches are distributed among these distances:
48 270 0.79
49 38 0.11
52 34 0.10
ACGTcount: A:0.30, C:0.17, G:0.26, T:0.26
Consensus pattern (48 bp):
GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGT
Found at i:722209 original size:48 final size:48
Alignment explanation
Indices: 722081--722365 Score: 354
Period size: 48 Copynumber: 5.8 Consensus size: 48
722071 TTTTAAAAAT
* * * *
722081 GATGAAGGCGCCAATATGCTGAGTCAAGGCCAGCAATATTGGACTCAAA
1 GATG-AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
* * * * * *
722130 GACGAAGGTGCCAATGTGTTGAGTCAAGGCCAGCGACATTGGACTTAAA
1 GATG-AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
* *
722179 GATGAGGTGTCAATATGCTGATTCAAGGCCAACTATATTGGACTTAAA
1 GATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
* *
722227 GGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAT
1 GATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
* * *
722275 GGTGGGGTGCCAATATGCTGATTCAAGGCCAGCTATATTAGACTTAAA
1 GATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
*
722323 GGTGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATT
1 ---GAT-GAGGTGCCAATATGCTGATTCAAGGCCAGCTATATT
722366 CGTCCCCACA
Statistics
Matches: 207, Mismatches: 25, Indels: 5
0.87 0.11 0.02
Matches are distributed among these distances:
48 126 0.61
49 45 0.22
51 2 0.01
52 34 0.16
ACGTcount: A:0.31, C:0.17, G:0.27, T:0.25
Consensus pattern (48 bp):
GATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
Found at i:722892 original size:863 final size:864
Alignment explanation
Indices: 721227--723221 Score: 3491
Period size: 863 Copynumber: 2.3 Consensus size: 864
721217 AAGGTGAGGT
* * ** * * *
721227 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTG-AGGTGCCAATATGCTGATTC
1 GCCAATATGCTGAGTCAAGGCCAGCAATATTGGACTTAAAGACGAAGGTGCCAATGTGTTGAGTC
* * * * *
721291 AAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGG
66 AAGGCCAGCGACATTGGACTTAAAGATGAGGTGACAATATGCTGATTCAAGGCCAACTATATTGG
* *
721356 ACTTAAAGGTGAGGTGGCAATATGCTGATTCAAGCCCAGCTATATTGGACTTAAAGGTGGGGTGC
131 ACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGGGGTGC
*
721421 CAATATGCTGATTCAAGGCCAACTATATTGGACTTAAAGGTGATAAAGGTGCCAATATGCTGATT
196 CAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGATAAAGGTGCCAATATGCTGATT
* *
721486 CAAGGCCAACTATATTCGTCCCCACATATGTCGAATCCTCTACCTACTAGCTAGGCCCTAAATTG
261 CAAGGCCAGCTATATTCGTCCCCACATATGTCGAATCCTCCACCTACTAGCTAGGCCCTAAATTG
*
721551 TTGAAAATTGGCCCGGACAAAATGAGGTGTCTACAGCTGCCCCTCTTTGGTCGTTTCGGAGTATC
326 TTGAAAATTGGCCCGGACAAAATGAGGTGTCTACAGCTGCCCCTCTTTGGCCGTTTCGGAGTATC
*
721616 AGGAACAGGCCAAAGACAAATAGGCACCATTTTGTCTGCAGCCGCATGTCATGACCTTTGGTGAT
391 AGGAACAGGCCAAAGACAAATAGACACCATTTTGTCTGCAGCCGCATGTCATGACCTTTGGTGAT
721681 TAATGCTTCGCCGTGATGAAGAGTGCATTGGCGACGGTTCCGATGGAAAAATGAGTTTGTAGGGT
456 TAATGCTTCGCCGTGATGAAGAGTGCATTGGCGACGGTTCCGATGGAAAAATGAGTTTGTAGGGT
721746 TTGTCCTCCCTACTAGGTTTTGGAATTTTCTAAGGCTTGACCTCCTTAGATAGGTGTAGATTGGT
521 TTGTCCTCCCTACTAGGTTTTGGAATTTTCTAAGGCTTGACCTCCTTAGATAGGTGTAGATTGGT
* *
721811 GTAGAGTTTGGAACGGATTTTGGAAGAATATGGTCAGTATTTTGCAGTGTGCCACTGTGCAGATT
586 GTAGAGTTTGGAACGGATTTTGGAAGAATATGGTCAGTATTTTGCAATGTGCCACTGTGCAGACT
*
721876 CAAGGCCTGCCACACTAGACTTAAAGATGATGAGGATGAAGAGTGATAAAAGGACCAGTATGTTG
651 CAAGGCCTGCCACACTAGACTTAAAGATGATGAGGATGAAGAGTGATAAAAGGACCAGTACGTTG
*
721941 ATTCACGGCCAACGATATTGGGTTTAAAGATGAGAAAAAGGATTCCAATATGCTGATTCACGGTC
716 ATTCACGACCAACGATATTGGGTTTAAAGATGAGAAAAAGGATTCCAATATGCTGATTCACGGTC
*
722006 AGCAACAGTTAGACTTGAAGATGAGAAGAATGCCAATGTGCTGATTCAAGGCCAATGGCATTGGG
781 AGCAACAGTTAGACTTGAAGATGAGAAGAATGCCAATGTGCTGATTCAAGGCCAACGGCATTGGG
722071 TTTTAAAAATGATGAAGGC
846 TTTTAAAAATGATGAAGGC
*
722090 GCCAATATGCTGAGTCAAGGCCAGCAATATTGGACTCAAAGACGAAGGTGCCAATGTGTTGAGTC
1 GCCAATATGCTGAGTCAAGGCCAGCAATATTGGACTTAAAGACGAAGGTGCCAATGTGTTGAGTC
*
722155 AAGGCCAGCGACATTGGACTTAAAGATGAGGTGTCAATATGCTGATTCAAGGCCAACTATATTGG
66 AAGGCCAGCGACATTGGACTTAAAGATGAGGTGACAATATGCTGATTCAAGGCCAACTATATTGG
*
722220 ACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAATGGTGGGGTGC
131 ACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGGGGTGC
*
722285 CAATATGCTGATTCAAGGCCAGCTATATTAGACTTAAAGGTGATAAAGGTGCCAATATGCTGATT
196 CAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGATAAAGGTGCCAATATGCTGATT
722350 CAAGGCCAGCTATATTCGTCCCCACATATGTCGAATCCTCCACCTACTAGCTAGGCCCTAAATTG
261 CAAGGCCAGCTATATTCGTCCCCACATATGTCGAATCCTCCACCTACTAGCTAGGCCCTAAATTG
*
722415 TTGAAAATTGGCCCGGACAAAATGAGGTGTCTACAGCTGCCCCTCTTTGGCCGTTTCTGAGTATC
326 TTGAAAATTGGCCCGGACAAAATGAGGTGTCTACAGCTGCCCCTCTTTGGCCGTTTCGGAGTATC
** **
722480 AGGAACAGGCCAAAGACAAATAGACACCATTTTGTCTGTGGCCGCATGTTTTGACCTTTGGTGAT
391 AGGAACAGGCCAAAGACAAATAGACACCATTTTGTCTGCAGCCGCATGTCATGACCTTTGGTGAT
* *
722545 TAATGCTTC-CTGTGATGAAGAGTGCATTGGCGACGGTTTCGATGGAAAAATGAGTTTGTAGGGT
456 TAATGCTTCGCCGTGATGAAGAGTGCATTGGCGACGGTTCCGATGGAAAAATGAGTTTGTAGGGT
*
722609 TTGTCCTCCCTACTAGGTTTTGGAATTTTCTAAGGCTTGACCTCTTTAGATAGGTGTAGATTGGT
521 TTGTCCTCCCTACTAGGTTTTGGAATTTTCTAAGGCTTGACCTCCTTAGATAGGTGTAGATTGGT
722674 GTAGAGTTTGGAACGGATTTTGGAAGAATATGGTCAGTATTTTGCAATGT-CGCACTGTGCAGAC
586 GTAGAGTTTGGAACGGATTTTGGAAGAATATGGTCAGTATTTTGCAATGTGC-CACTGTGCAGAC
* * *
722738 TCAAGGCCTGCCACACTGGTCTTCAAGATGATGAGGATGAAGAGTGATAAAAGGACCAGTACGTT
650 TCAAGGCCTGCCACACTAGACTTAAAGATGATGAGGATGAAGAGTGATAAAAGGACCAGTACGTT
*
722803 TATTCACGACCAACGATATTGGGTTTAAAGATGAGAAAAAGGATTCCAATATGCTGATTCACGGT
715 GATTCACGACCAACGATATTGGGTTTAAAGATGAGAAAAAGGATTCCAATATGCTGATTCACGGT
*
722868 CAGCAATAGTTAGACTTGAAGATGAGAAGAATGCCAATGTGCTGATTCAAGGCCAACGGCATTGG
780 CAGCAACAGTTAGACTTGAAGATGAGAAGAATGCCAATGTGCTGATTCAAGGCCAACGGCATTGG
722933 GTTTTAAAAATGATGAAGGC
845 GTTTTAAAAATGATGAAGGC
* * *
722953 ACCAATATGGTGAGTCAAGGCCAGCGATATTGGACTTAAAGACGAAGGTGCCAATGTGTTGAGTC
1 GCCAATATGCTGAGTCAAGGCCAGCAATATTGGACTTAAAGACGAAGGTGCCAATGTGTTGAGTC
*
723018 AAGGCCAGCGACATTGGACTTAAAGATGAGGTGACAATATGCTGATTTAAGGCCAACTATATTGG
66 AAGGCCAGCGACATTGGACTTAAAGATGAGGTGACAATATGCTGATTCAAGGCCAACTATATTGG
* *
723083 ACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTAGACTTAAAGGTGAGGTGC
131 ACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGGGGTGC
* *
723148 CAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGGTG----AGGTGACAATATGCTGATT
196 CAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGATAAAGGTGCCAATATGCTGATT
723209 CAAGGCCAGCTAT
261 CAAGGCCAGCTAT
723222 GTTGGACTTA
Statistics
Matches: 1078, Mismatches: 52, Indels: 8
0.95 0.05 0.01
Matches are distributed among these distances:
859 31 0.03
862 1 0.00
863 649 0.60
864 397 0.37
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.27
Consensus pattern (864 bp):
GCCAATATGCTGAGTCAAGGCCAGCAATATTGGACTTAAAGACGAAGGTGCCAATGTGTTGAGTC
AAGGCCAGCGACATTGGACTTAAAGATGAGGTGACAATATGCTGATTCAAGGCCAACTATATTGG
ACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGGGGTGC
CAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGATAAAGGTGCCAATATGCTGATT
CAAGGCCAGCTATATTCGTCCCCACATATGTCGAATCCTCCACCTACTAGCTAGGCCCTAAATTG
TTGAAAATTGGCCCGGACAAAATGAGGTGTCTACAGCTGCCCCTCTTTGGCCGTTTCGGAGTATC
AGGAACAGGCCAAAGACAAATAGACACCATTTTGTCTGCAGCCGCATGTCATGACCTTTGGTGAT
TAATGCTTCGCCGTGATGAAGAGTGCATTGGCGACGGTTCCGATGGAAAAATGAGTTTGTAGGGT
TTGTCCTCCCTACTAGGTTTTGGAATTTTCTAAGGCTTGACCTCCTTAGATAGGTGTAGATTGGT
GTAGAGTTTGGAACGGATTTTGGAAGAATATGGTCAGTATTTTGCAATGTGCCACTGTGCAGACT
CAAGGCCTGCCACACTAGACTTAAAGATGATGAGGATGAAGAGTGATAAAAGGACCAGTACGTTG
ATTCACGACCAACGATATTGGGTTTAAAGATGAGAAAAAGGATTCCAATATGCTGATTCACGGTC
AGCAACAGTTAGACTTGAAGATGAGAAGAATGCCAATGTGCTGATTCAAGGCCAACGGCATTGGG
TTTTAAAAATGATGAAGGC
Found at i:723082 original size:48 final size:48
Alignment explanation
Indices: 722954--723324 Score: 526
Period size: 48 Copynumber: 7.6 Consensus size: 48
722944 GATGAAGGCA
* * * **
722954 CCAATATGGTGAGTCAAGGCCAGCGATATTGGACTTAAAGACGAAGGTG
1 CCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTG-AGGTG
* * * * * *
723003 CCAATGTGTTGAGTCAAGGCCAGCGACATTGGACTTAAAGATGAGGTG
1 CCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTG
* * *
723051 ACAATATGCTGATTTAAGGCCAACTATATTGGACTTAAAGGTGAGGTG
1 CCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTG
*
723099 CCAATATGCTGATTCAAGGCCAGCTATATTAGACTTAAAGGTGAGGTG
1 CCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTG
*
723147 CCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGGTGAGGTG
1 CCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTG
* *
723195 ACAATATGCTGATTCAAGGCCAGCTATGTTGGACTTAAAGGTGAGGTG
1 CCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTG
*
723243 CCAATATGCTGATTCAAGGCCAGCTATATTAGACTTAAAGGTGATAAAGGTG
1 CCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTG----AGGTG
723295 CCAATATGCTGATTCAAGGCCAGCTATATT
1 CCAATATGCTGATTCAAGGCCAGCTATATT
723325 CGTCCCCACA
Statistics
Matches: 293, Mismatches: 25, Indels: 5
0.91 0.08 0.02
Matches are distributed among these distances:
48 219 0.75
49 39 0.13
52 35 0.12
ACGTcount: A:0.31, C:0.16, G:0.26, T:0.26
Consensus pattern (48 bp):
CCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTG
Found at i:723976 original size:943 final size:948
Alignment explanation
Indices: 722092--724263 Score: 3558
Period size: 943 Copynumber: 2.3 Consensus size: 948
722082 ATGAAGGCGC
* * * * ** * * *
722092 CAATATGCTGAGTCAAGGCCAGCAATATTGGACTCAAAGACGAAGGTGCCAATGTGTTGAGTCAA
1 CAATATGCTGATTCAAGGCCAACTATATTGGACTTAAAGGTG-AGGTGCCAATATGCTGATTCAA
* * * * *
722157 GGCCAGCGACATTGGACTTAAAGATGAGGTGTCAATATGCTGATTCAAGGCCAACTATATTGGAC
65 GGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGAC
* *
722222 TTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAATGGTGGGGTGCCA
130 TTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCA
722287 ATATGCTGATTCAAGGCCAGCTATATTAGACTTAAAGGTGATAAAGGTGCCAATATGCTGATTCA
195 ATATGCTGATTCAAGGCCAGCTATATTAGACTTAAAGGTGATAAAGGTGCCAATATGCTGATTCA
*
722352 AGGCCAGCTATATTCGTCCCCACATATGTCGAATCCTCCACCTACTAGCTAGGCCCTAAATTGTT
260 AGGCCAGCTATATTCGTCCCCACATATGTCGAATCCTCCACCTACTAGCTAGGCCCTAAATTGCT
* *
722417 GAAAATTGGCCCGGACAAAATGAGGTGTCTACAGCTGCCCCTCTTTGGCCGTTTCTGAGTATCAG
325 GAAAATTGGCCCGGACAAAATGAGATGTCTACAGCTGCCCCTCTTTGGCCATTTCT-AG----AG
** **
722482 GAACAGGCCAAAGACAAATAGACACCATTTTGTCTGTGGCCGCATGTTTTGACCTTTGGTGATTA
385 GAACAGGCCAAAGACAAATAGACACCATTTTGTCTGCAGCCGCATGTCATGACCTTTGGTGATTA
* * *
722547 ATGCTTCCTGTGATGAAGAGTGCATTGGCGACGGTTTCGATGGAAAAATGAGTTTGTAGGGTTTG
450 ATGCTTCCCGTGATGAAGAGTGCATTGGCGACGGTTCCGATGGAAAAATGAGTTTGTAGGGCTTG
*
722612 TCCTCCCTACTAGGTTTTGGAATTTTCTAAGGCTTGACCTCTTTAGATAGGTGTAGATTGGTGTA
515 ACCTCCCTACTAGGTTTTGGAATTTTCTAAGGCTTGACCTCTTTAGA-A---GTA-A-TGGTGTA
**
722677 GAGTTTGGAACGGATTTTGGAAGAATATGGTCAGTATTTTGCAATGTCGCACTGTGCAGACTCAA
574 GAGTTTGGAACGGATTTTGGAAGAATATGGTCAGTATTTTGCAATGTCGCACTACGCAGACTCAA
* * * * *
722742 GGCCTGCCACACTGGTCTTCAAGATGATGAGGATGAAGAGTGATAAAAGGACCAGTACGTTTATT
639 GGCCTGCCACAATGGACTTAAAGATGATGAGGATAAAGAGTGATAAAAGGACCAGTACGTTGATT
* *
722807 CACGACCAACGATATTGGGTTTAAAGATGAGAAAAAGGATTCCAATATGCTGATTCACGGTCAGC
704 CACGACCAACGATATTGGGTTTAAAGATGAGAAAAAGGATTCCAATATGCTAATTCAAGGTCAGC
* * *
722872 AATAGTTAGACTTGAAGATGAGAAGAATGCCAATGTGCTGATTCAAGGCCAACGGCATTGGGTTT
769 AACAGTTAGACTGGAAGATGAGAAGAATGACAATGTGCTGATTCAAGGCCAACGGCATTGGGTTT
*
722937 TAAAAATGATGAAGGCACCAATATGGTGAGTCAAGGCCAGCGATATTGGACTTAAAGACGAAGGT
834 TAAAAATGATGAAGGCACCAATATGCTGAGTCAAGGCCAGCGATATTGGACTTAAAGACGAAGGT
*
723002 GCCAATGTGTTGAGTCAAGGCCAGCGACATTGGACTTAAAGATGAGGTGA
899 GCCAATGTGTTGAGTCAAGGCCAGCGACATTGGACTCAAAGATGAGGTGA
*
723052 CAATATGCTGATTTAAGGCCAACTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAG
1 CAATATGCTGATTCAAGGCCAACTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAG
* *
723117 GCCAGCTATATTAGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACT
66 GCCAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACT
* *
723182 TAAAGGTGAGGTGACAATATGCTGATTCAAGGCCAGCTATGTTGGACTTAAAGGTGAGGTGCCAA
131 TAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAA
723247 TATGCTGATTCAAGGCCAGCTATATTAGACTTAAAGGTGATAAAGGTGCCAATATGCTGATTCAA
196 TATGCTGATTCAAGGCCAGCTATATTAGACTTAAAGGTGATAAAGGTGCCAATATGCTGATTCAA
723312 GGCCAGCTATATTCGTCCCCACATATGTCGAATCCTCCACCTACTAGCTAGGCCCTAAATTGCTG
261 GGCCAGCTATATTCGTCCCCACATATGTCGAATCCTCCACCTACTAGCTAGGCCCTAAATTGCTG
*
723377 AAAATTGGCCCGGACAAAATGAGATGTCTATAGCTGCCCCTCTTTGGCCATTTCT-G-GGAACAG
326 AAAATTGGCCCGGACAAAATGAGATGTCTACAGCTGCCCCTCTTTGGCCATTTCTAGAGGAACAG
723440 GCCAAAGACAAATAGACACCATTTTGTCTGCAGCCGCATGTCATGACCTTTGGTGATTAATGCTT
391 GCCAAAGACAAATAGACACCATTTTGTCTGCAGCCGCATGTCATGACCTTTGGTGATTAATGCTT
723505 CGCCGTGATGAAGAGTGCATTGGCGACGGTTCCGATGGAAAAATGAGTTTGTAGGGCTTGACCTC
456 C-CCGTGATGAAGAGTGCATTGGCGACGGTTCCGATGGAAAAATGAGTTTGTAGGGCTTGACCTC
* *
723570 CCTTCTAGGTTTTGGAATTTTCTAAGGCTTGACCTCTTTAG-A-T-A-GGTGTAGAGTTTGGAAT
520 CCTACTAGGTTTTGGAATTTTCTAAGGCTTGACCTCTTTAGAAGTAATGGTGTAGAGTTTGGAAC
*
723631 GGATTTTGGAAGAATATGGTCAGTATTTTGCAATGT-GCCACTACGCAGATTCAAGGCCTGCCAC
585 GGATTTTGGAAGAATATGGTCAGTATTTTGCAATGTCG-CACTACGCAGACTCAAGGCCTGCCAC
*
723695 AATGGACTTAAAGATGATGAGGATAAAGAGTGATAAAAGGACCAGTACGTTGATTCACGGCCAAC
649 AATGGACTTAAAGATGATGAGGATAAAGAGTGATAAAAGGACCAGTACGTTGATTCACGACCAAC
723760 GATATTGGGTTTAAAGATGAGAAAAAGGATGT-CAATATGCTAATTCAAGGTCAGCAACAGTTAG
714 GATATTGGGTTTAAAGATGAGAAAAAGGAT-TCCAATATGCTAATTCAAGGTCAGCAACAGTTAG
*
723824 ACTGGAAGATGAGAAGAATGATAATGTGCTGATTCAAGGCCAACGGCATTGGGTTTTAAAAATGA
778 ACTGGAAGATGAGAAGAATGACAATGTGCTGATTCAAGGCCAACGGCATTGGGTTTTAAAAATGA
*
723889 TGAAGGCGCCAATATGCTGAGTCAAGGCCAGCGATATTGGACTTAAAGACGAAGGTGCCAATGTG
843 TGAAGGCACCAATATGCTGAGTCAAGGCCAGCGATATTGGACTTAAAGACGAAGGTGCCAATGTG
* *
723954 TTGAGTCAAGGCCAGCGACATTGGACTCAAAGGTGAGGTGC
908 TTGAGTCAAGGCCAGCGACATTGGACTCAAAGATGAGGTGA
* *
723995 CAATATTCTGATTCAAGGCCAACTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTTAAG
1 CAATATGCTGATTCAAGGCCAACTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAG
* *
724060 GCCAACTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTAGACT
66 GCCAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACT
* *
724125 TAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGGTGAGGTGACAA
131 TAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAA
* *
724190 TATGCTGATTCAAGGCCAGCTATGTTGGACTTAAAGGTG----AGGTGCCAATATGCTGATTCAA
196 TATGCTGATTCAAGGCCAGCTATATTAGACTTAAAGGTGATAAAGGTGCCAATATGCTGATTCAA
724251 GGCCAGCTATATT
261 GGCCAGCTATATT
724264 AGACTTAAAG
Statistics
Matches: 1141, Mismatches: 68, Indels: 27
0.92 0.06 0.02
Matches are distributed among these distances:
939 35 0.03
942 1 0.00
943 577 0.51
944 1 0.00
945 1 0.00
947 1 0.00
951 1 0.00
952 69 0.06
953 99 0.09
957 1 0.00
959 320 0.28
960 35 0.03
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.27
Consensus pattern (948 bp):
CAATATGCTGATTCAAGGCCAACTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAG
GCCAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACT
TAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAA
TATGCTGATTCAAGGCCAGCTATATTAGACTTAAAGGTGATAAAGGTGCCAATATGCTGATTCAA
GGCCAGCTATATTCGTCCCCACATATGTCGAATCCTCCACCTACTAGCTAGGCCCTAAATTGCTG
AAAATTGGCCCGGACAAAATGAGATGTCTACAGCTGCCCCTCTTTGGCCATTTCTAGAGGAACAG
GCCAAAGACAAATAGACACCATTTTGTCTGCAGCCGCATGTCATGACCTTTGGTGATTAATGCTT
CCCGTGATGAAGAGTGCATTGGCGACGGTTCCGATGGAAAAATGAGTTTGTAGGGCTTGACCTCC
CTACTAGGTTTTGGAATTTTCTAAGGCTTGACCTCTTTAGAAGTAATGGTGTAGAGTTTGGAACG
GATTTTGGAAGAATATGGTCAGTATTTTGCAATGTCGCACTACGCAGACTCAAGGCCTGCCACAA
TGGACTTAAAGATGATGAGGATAAAGAGTGATAAAAGGACCAGTACGTTGATTCACGACCAACGA
TATTGGGTTTAAAGATGAGAAAAAGGATTCCAATATGCTAATTCAAGGTCAGCAACAGTTAGACT
GGAAGATGAGAAGAATGACAATGTGCTGATTCAAGGCCAACGGCATTGGGTTTTAAAAATGATGA
AGGCACCAATATGCTGAGTCAAGGCCAGCGATATTGGACTTAAAGACGAAGGTGCCAATGTGTTG
AGTCAAGGCCAGCGACATTGGACTCAAAGATGAGGTGA
Found at i:724012 original size:48 final size:48
Alignment explanation
Indices: 723896--724315 Score: 624
Period size: 48 Copynumber: 8.6 Consensus size: 48
723886 TGATGAAGGC
* * **
723896 GCCAATATGCTGAGTCAAGGCCAGCGATATTGGACTTAAAGACGAAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTG-AGGT
* * * * * *
723945 GCCAATGTGTTGAGTCAAGGCCAGCGACATTGGACTCAAAGGTGAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGT
* *
723993 GCCAATATTCTGATTCAAGGCCAACTATATTGGACTTAAAGGTGAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGT
* *
724041 GCCAATATGCTGATTTAAGGCCAACTATATTGGACTTAAAGGTGAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGT
*
724089 GCCAATATGCTGATTCAAGGCCAGCTATATTAGACTTAAAGGTGAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGT
*
724137 GCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGGTGAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGT
* *
724185 GACAATATGCTGATTCAAGGCCAGCTATGTTGGACTTAAAGGTGAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGT
*
724233 GCCAATATGCTGATTCAAGGCCAGCTATATTAGACTTAAAGGTGATAAAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTG----AGGT
724285 GCCAATATGCTGATTCAAGGCCAGCTATATT
1 GCCAATATGCTGATTCAAGGCCAGCTATATT
724316 CGTCCCCACA
Statistics
Matches: 340, Mismatches: 27, Indels: 5
0.91 0.07 0.01
Matches are distributed among these distances:
48 267 0.79
49 38 0.11
52 35 0.10
ACGTcount: A:0.31, C:0.17, G:0.26, T:0.26
Consensus pattern (48 bp):
GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGT
Found at i:725026 original size:48 final size:48
Alignment explanation
Indices: 724898--725172 Score: 343
Period size: 48 Copynumber: 5.6 Consensus size: 48
724888 GATGAAGGCA
* * *
724898 CCAATATGCTGAGTCAAGGCCAGCAATATTGGACTTAAAGACGAAGGTG
1 CCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATG-AGGTG
* * * * *
724947 CCAATGTGTTGAGTCAAGGCCAGCGACATTGGACTTAAAGATGAGGTG
1 CCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAGGTG
* * * *
724995 ACAATATGCTGATTTAAGGCCAACTATATTGGACTTAAAGGTGAGGTG
1 CCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAGGTG
* *
725043 CCAATATGCTGATTCAAGGCCAGCTATATTAGACTTAAAGGTGAGGTG
1 CCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAGGTG
* * *
725091 ACAATATGCTGATTCAAGGCCAGCTATGTTGGACTTAAAGGTGATAAAGGTG
1 CCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA---GAT-GAGGTG
*
725143 CCAATATGCTGATTCAAGGCCAGCTCTATT
1 CCAATATGCTGATTCAAGGCCAGCTATATT
725173 CGTCCCCACA
Statistics
Matches: 196, Mismatches: 26, Indels: 5
0.86 0.11 0.02
Matches are distributed among these distances:
48 124 0.63
49 38 0.19
51 2 0.01
52 32 0.16
ACGTcount: A:0.32, C:0.17, G:0.26, T:0.26
Consensus pattern (48 bp):
CCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAGGTG
Found at i:725088 original size:96 final size:97
Alignment explanation
Indices: 724899--725172 Score: 379
Period size: 96 Copynumber: 2.8 Consensus size: 97
724889 ATGAAGGCAC
* * ** * * *
724899 CAATATGCTGAGTCAAGGCCAGCAATATTGGACTTAAAGACGAAGGTGCCAATGTGTTGAGTCAA
1 CAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAAGGTGCCAATATGCTGATTCAA
* * *
724964 GGCCAGCGACATTGGACTTAAAGATGAGGTGA
66 GGCCAGCTATATTAGACTTAAAGATGAGGTGA
* *
724996 CAATATGCTGATTTAAGGCCAACTATATTGGACTTAAAGGTG-AGGTGCCAATATGCTGATTCAA
1 CAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAAGGTGCCAATATGCTGATTCAA
*
725060 GGCCAGCTATATTAGACTTAAAGGTGAGGTGA
66 GGCCAGCTATATTAGACTTAAAGATGAGGTGA
*
725092 CAATATGCTGATTCAAGGCCAGCTATGTTGGACTTAAAGGTGATAAAGGTGCCAATATGCTGATT
1 CAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTG---AAGGTGCCAATATGCTGATT
*
725157 CAAGGCCAGCTCTATT
63 CAAGGCCAGCTATATT
725173 CGTCCCCACA
Statistics
Matches: 156, Mismatches: 17, Indels: 5
0.88 0.10 0.03
Matches are distributed among these distances:
96 86 0.55
97 36 0.23
100 34 0.22
ACGTcount: A:0.32, C:0.16, G:0.26, T:0.26
Consensus pattern (97 bp):
CAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAAGGTGCCAATATGCTGATTCAA
GGCCAGCTATATTAGACTTAAAGATGAGGTGA
Found at i:725746 original size:864 final size:857
Alignment explanation
Indices: 724042--726032 Score: 3272
Period size: 864 Copynumber: 2.3 Consensus size: 857
724032 AGGTGAGGTG
* * * * ** * * *
724042 CCAATATGCTGATTTAAGGCCAACTATATTGGACTTAAAGGTG-AGGTGCCAATATGCTGATTCA
1 CCAATATGCTGAGTCAAGGCCAGCAATATTGGACTTAAAGACGAAGGTGCCAATGTGTTGAGTCA
* * * * * *
724106 AGGCCAGCTATATTAGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGA
66 AGGCCAGCGACATTGGACTTAAAGATGAGGTGCCAATATGCTGATTCAAGGCCAACTATATTGGA
* * *
724171 CTTAAAGGTGAGGTGACAATATGCTGATTCAAGGCCAGCTATGTTGGACTTAAAGGTGAGGTGCC
131 CTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTAGACTTAAAGGTGAGGTGCC
724236 AATATGCTGATTCAAGGCCAGCTATATTAGACTTAAAGGTGATAAAGGTGCCAATATGCTGATTC
196 AATATGCTGATTCAAGGCCAGCTATATTAGACTTAAAGGTGATAAAGGTGCCAATATGCTGATTC
724301 AAGGCCAGCTATATTCGTCCCCACATATGTCGAATCCTCCACCTACTAGCTAGGCCCTAAATTGC
261 AAGGCCAGCTATATTCGTCCCCACATATGTCGAATCCTCCACCTACTAGCTAGGCCCTAAATTGC
724366 TGAAAATTGGCCCGGACAAAATGAGATGTCTATAGCTGCCCCTCTTTGGCCATTTCTGGGAACAG
326 TGAAAATTGGCCCGGACAAAATGAGATGTCTATAGCTGCCCCTCTTTGGCCATTTCTGGGAACAG
* *
724431 GCCAAAGACAAATAAACGCCATTTTGTCTGCAGCCGCATGTCATGACCTTTGGTGATTAATGCTT
391 GCCAAAGACAAATAAACACCATTTTGTCTGCAGCCGCATGTCACGACCTTTGGTGATTAATGCTT
* *
724496 CGCCGTGATGAAGAGTGCATTGGCGACGGTTCCGATGGAAAAATGAGTTTGTAGGGTTTGTCCTC
456 CGCCGTGATGAAGAGTGCATTGGCGACGGATCCGATGGAAAAATAAGTTTGTAGGGTTTGTCCTC
*
724561 CCTACTAGGTTTTGGAATTTTCTAAGGCTTGACCTCCTTAGATAGGTGTAGATTGGTGTAGAGTT
521 CCTACTAGGTTTTGGAATTTTCTAAGGCCTGACCTCCTTAGATAGGTGTAGATTGGTGTAGAGTT
* * * *
724626 TGGAACAGATTTTGGAAGATTATGGTCAGTATTTTGCAATGTGCCACTGTGCAGATTCAAGGACT
586 TGGAACAGATTTTGGAAGAATATGGTCAGTATTTCGCAATGGGCCACTGTGCAAATTCAAGGACT
* * *
724691 GCCACACTGGACTTAAAGTTGATGAGGATGAAGAGTGATAAAAGGACCAGTACGTTGATTCACGA
651 GCCACACAGGACTTAAAGATGATGAGGATGAAGAGTCATAAAAGGACCAGTACGTTGATTCACGA
* * *
724756 CCAACGATACTAGGTTTAAAGATTAGAAAAAGGATTTCAATATGCTGATTCACGGTCAGTAACAG
716 CCAACGATACTAGGTTTAAAGATGAGAAAAAGGATGTCAATATGCTGATTCACGGTCAGCAACAG
*
724821 CTAGACTTGAAGATGAGAAGAATGCCAATGTGCTGATTCAAGGCCAACGGCATTGGGTTTTAAAA
781 CTAGACTTGAAGATGAGAAGAATGCCAATGTGCTGATTCAAGGCCAACAGCATTGGGTTTTAAAA
724886 ATGATGAAGGCA
846 ATGATGAAGGCA
724898 CCAATATGCTGAGTCAAGGCCAGCAATATTGGACTTAAAGACGAAGGTGCCAATGTGTTGAGTCA
1 CCAATATGCTGAGTCAAGGCCAGCAATATTGGACTTAAAGACGAAGGTGCCAATGTGTTGAGTCA
* *
724963 AGGCCAGCGACATTGGACTTAAAGATGAGGTGACAATATGCTGATTTAAGGCCAACTATATTGGA
66 AGGCCAGCGACATTGGACTTAAAGATGAGGTGCCAATATGCTGATTCAAGGCCAACTATATTGGA
*
725028 CTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTAGACTTAAAGGTGAGGTGAC
131 CTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTAGACTTAAAGGTGAGGTGCC
* *
725093 AATATGCTGATTCAAGGCCAGCTATGTTGGACTTAAAGGTGATAAAGGTGCCAATATGCTGATTC
196 AATATGCTGATTCAAGGCCAGCTATATTAGACTTAAAGGTGATAAAGGTGCCAATATGCTGATTC
* * *
725158 AAGGCCAGCTCTATTCGTCCCCACATATGTCGAATCCTCCGCCTACTAGCTAGGCCCTAAATTGT
261 AAGGCCAGCTATATTCGTCCCCACATATGTCGAATCCTCCACCTACTAGCTAGGCCCTAAATTGC
* * *
725223 TGAAAATTGGCCCGGACAAAATGAGGTGTCTATAGCTGCTCCTCTTTGGCCGTTTCTGAGTATCA
326 TGAAAATTGGCCCGGACAAAATGAGATGTCTATAGCTGCCCCTCTTTGGCCATTTCT--G-----
* *
725288 GGAACAGGCCAAAGACAAATAGACACCATTTTGTCTGCGGCCGCATGTCACGACCTTTGGTGATT
384 GGAACAGGCCAAAGACAAATAAACACCATTTTGTCTGCAGCCGCATGTCACGACCTTTGGTGATT
*
725353 AATGCTTCGCCGTGATGAAGAGTGCATTGGCGACGGATCCGATGGCAAAATAAGTTTGTAGGGTT
449 AATGCTTCGCCGTGATGAAGAGTGCATTGGCGACGGATCCGATGGAAAAATAAGTTTGTAGGGTT
725418 TGTCCTCCCTACTAGGTTTTGGAATTTTCTAAGGCCTGACCTCCTTAGATAGGTGTAGATTGGTG
514 TGTCCTCCCTACTAGGTTTTGGAATTTTCTAAGGCCTGACCTCCTTAGATAGGTGTAGATTGGTG
*
725483 TAGAGTTTGGAACAGATTTTGGAAGAATATGGTCAGTATTTCGCAATGGGCCTCTGTGCAAATTC
579 TAGAGTTTGGAACAGATTTTGGAAGAATATGGTCAGTATTTCGCAATGGGCCACTGTGCAAATTC
*
725548 AAGGCCTGCCACACAGGACTTAAAGATGATGAGGATGAAGAGTCATAAAAGGACCAGTACGTTGA
644 AAGGACTGCCACACAGGACTTAAAGATGATGAGGATGAAGAGTCATAAAAGGACCAGTACGTTGA
* * * * *
725613 TTCACGGCCAACGATATTGGGTTTAAAGATGGGAAAAAGGATGTCAATATGCTGATTCACGGTTA
709 TTCACGACCAACGATACTAGGTTTAAAGATGAGAAAAAGGATGTCAATATGCTGATTCACGGTCA
* *
725678 GCAACAGTTAGACTTGAAGTTGAGAAGAATGCCAATGTGCTGATTCAAGGCCAACAGCATTGGGT
774 GCAACAGCTAGACTTGAAGATGAGAAGAATGCCAATGTGCTGATTCAAGGCCAACAGCATTGGGT
*
725743 TTTAAAAATGATGAAGGCG
839 TTTAAAAATGATGAAGGCA
* *
725762 CCAATATGCTGAGTCAAGGCCAGCGATAGTGGACTTAAAGACGAAGGTGCCAATGTGTTGAGTCA
1 CCAATATGCTGAGTCAAGGCCAGCAATATTGGACTTAAAGACGAAGGTGCCAATGTGTTGAGTCA
* *
725827 AGGCCAGCGACATTGGACATAAAGATGAGGTGCCAATATACTGATTCAAGGCCAACTATATTGGA
66 AGGCCAGCGACATTGGACTTAAAGATGAGGTGCCAATATGCTGATTCAAGGCCAACTATATTGGA
* * *
725892 CTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAACTATATTAGACTTAAATGTAAGGTGCC
131 CTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTAGACTTAAAGGTGAGGTGCC
* * *
725957 AATTTGCTGATTCAAGGCCAGCTATATTAGACATAAAGGTG----AGGTGCCAATTTGCTGATTC
196 AATATGCTGATTCAAGGCCAGCTATATTAGACTTAAAGGTGATAAAGGTGCCAATATGCTGATTC
726018 AAGGCCAGCTATATT
261 AAGGCCAGCTATATT
726033 GGACTTAAAG
Statistics
Matches: 1053, Mismatches: 74, Indels: 12
0.92 0.06 0.01
Matches are distributed among these distances:
856 37 0.04
857 315 0.30
859 1 0.00
860 33 0.03
864 667 0.63
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.27
Consensus pattern (857 bp):
CCAATATGCTGAGTCAAGGCCAGCAATATTGGACTTAAAGACGAAGGTGCCAATGTGTTGAGTCA
AGGCCAGCGACATTGGACTTAAAGATGAGGTGCCAATATGCTGATTCAAGGCCAACTATATTGGA
CTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTAGACTTAAAGGTGAGGTGCC
AATATGCTGATTCAAGGCCAGCTATATTAGACTTAAAGGTGATAAAGGTGCCAATATGCTGATTC
AAGGCCAGCTATATTCGTCCCCACATATGTCGAATCCTCCACCTACTAGCTAGGCCCTAAATTGC
TGAAAATTGGCCCGGACAAAATGAGATGTCTATAGCTGCCCCTCTTTGGCCATTTCTGGGAACAG
GCCAAAGACAAATAAACACCATTTTGTCTGCAGCCGCATGTCACGACCTTTGGTGATTAATGCTT
CGCCGTGATGAAGAGTGCATTGGCGACGGATCCGATGGAAAAATAAGTTTGTAGGGTTTGTCCTC
CCTACTAGGTTTTGGAATTTTCTAAGGCCTGACCTCCTTAGATAGGTGTAGATTGGTGTAGAGTT
TGGAACAGATTTTGGAAGAATATGGTCAGTATTTCGCAATGGGCCACTGTGCAAATTCAAGGACT
GCCACACAGGACTTAAAGATGATGAGGATGAAGAGTCATAAAAGGACCAGTACGTTGATTCACGA
CCAACGATACTAGGTTTAAAGATGAGAAAAAGGATGTCAATATGCTGATTCACGGTCAGCAACAG
CTAGACTTGAAGATGAGAAGAATGCCAATGTGCTGATTCAAGGCCAACAGCATTGGGTTTTAAAA
ATGATGAAGGCA
Found at i:725877 original size:48 final size:48
Alignment explanation
Indices: 725752--726132 Score: 476
Period size: 48 Copynumber: 7.8 Consensus size: 48
725742 TTTTAAAAAT
* * * *
725752 GATGAAGGCGCCAATATGCTGAGTCAAGGCCAGCGATAGTGGACTTAAA
1 GATG-AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
* * * * * * *
725801 GACGAAGGTGCCAATGTGTTGAGTCAAGGCCAGCGACATTGGACATAAA
1 GATG-AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
* *
725850 GATGAGGTGCCAATATACTGATTCAAGGCCAACTATATTGGACTTAAA
1 GATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
* * *
725898 GGTGAGGTGCCAATATGCTGATTCAAGGCCAACTATATTAGACTTAAA
1 GATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
* * * *
725946 TG-TAAGGTGCCAATTTGCTGATTCAAGGCCAGCTATATTAGACATAAA
1 -GATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
* *
725994 GGTGAGGTGCCAATTTGCTGATTCAAGGCCAGCTATATTGGACTTAAA
1 GATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
*
726042 GGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
1 GATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
*
726090 GGTGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATT
1 ---GAT-GAGGTGCCAATATGCTGATTCAAGGCCAGCTATATT
726133 CGTCCCCACA
Statistics
Matches: 297, Mismatches: 29, Indels: 9
0.89 0.09 0.03
Matches are distributed among these distances:
47 1 0.00
48 213 0.72
49 46 0.15
51 2 0.01
52 35 0.12
ACGTcount: A:0.32, C:0.17, G:0.26, T:0.25
Consensus pattern (48 bp):
GATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
Found at i:725993 original size:144 final size:145
Alignment explanation
Indices: 725761--726132 Score: 541
Period size: 144 Copynumber: 2.6 Consensus size: 145
725751 TGATGAAGGC
* * * * * * *
725761 GCCAATATGCTGAGTCAAGGCCAGCGATAGTGGACTTAAA-GACGAAGGTGCCAATGTGTTGAGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAATGA-TAAGGTGCCAATATGCTGATT
* * *
725825 CAAGGCCAGCGACATTGGACATAAAGATGAGGTGCCAATATACTGATTCAAGGCCAACTATATTG
65 CAAGGCCAGCTATATTAGACATAAAGATGAGGTGCCAATATACTGATTCAAGGCCAACTATATTG
725890 GACTTAAAGGTGAGGT
130 GACTTAAAGGTGAGGT
* * *
725906 GCCAATATGCTGATTCAAGGCCAACTATATTAGACTTAAATG-TAAGGTGCCAATTTGCTGATTC
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAATGATAAGGTGCCAATATGCTGATTC
* * * *
725970 AAGGCCAGCTATATTAGACATAAAGGTGAGGTGCCAATTTGCTGATTCAAGGCCAGCTATATTGG
66 AAGGCCAGCTATATTAGACATAAAGATGAGGTGCCAATATACTGATTCAAGGCCAACTATATTGG
726035 ACTTAAAGGTGAGGT
131 ACTTAAAGGTGAGGT
726050 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGATAAAGGTGCCAATATGCTGA
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA--TGAT-AAGGTGCCAATATGCTGA
726115 TTCAAGGCCAGCTATATT
63 TTCAAGGCCAGCTATATT
726133 CGTCCCCACA
Statistics
Matches: 203, Mismatches: 19, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
144 129 0.64
145 35 0.17
146 3 0.01
147 1 0.00
148 35 0.17
ACGTcount: A:0.32, C:0.17, G:0.25, T:0.26
Consensus pattern (145 bp):
GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAATGATAAGGTGCCAATATGCTGATTC
AAGGCCAGCTATATTAGACATAAAGATGAGGTGCCAATATACTGATTCAAGGCCAACTATATTGG
ACTTAAAGGTGAGGT
Found at i:726790 original size:950 final size:952
Alignment explanation
Indices: 724898--727034 Score: 3479
Period size: 950 Copynumber: 2.2 Consensus size: 952
724888 GATGAAGGCA
* * * ** * * *
724898 CCAATATGCTGAGTCAAGGCCAGCAATATTGGACTTAAAGACGAAGGTGCCAATGTGTTGAGTCA
1 CCAATATGCTGATTCAAGGCCAACTATATTGGACTTAAAGGTG-AGGTGCCAATATGCTGATTCA
* * * * * * *
724963 AGGCCAGCGACATTGGACTTAAAGATGAGGTGACAATATGCTGATTTAAGGCCAACTATATTGGA
65 AGGCCAGCTATATTAGACTTAAAG-TGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTAGA
* * *
725028 CTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTAGACTTAAAGGTGAGGTGAC
129 CTTAAAGGTGAGGTGCCAATTTGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCC
*
725093 AATATGCTGATTCAAGGCCAGCTATGTTGGACTTAAAGGTGATAAAGGTGCCAATATGCTGATTC
194 AATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGATAAAGGTGCCAATATGCTGATTC
* * *
725158 AAGGCCAGCTCTATTCGTCCCCACATATGTCGAATCCTCCGCCTACTAGCTAGGCCCTAAATTGT
259 AAGGCCAGCTATATTCGTCCCCACATATGTCGAATCCTCCACCTACTAGCTAGGCCCTAAATTGC
* * *
725223 TGAAAATTGGCCCGGACAAAATGAGGTGTCTATAGCTGCTCCTCTTTGGCCGTTTCTGAGTATCA
324 TGAAAATTGGCCCGGACAAAATGAGATGTCTATAGCTGCCCCTCTTTGGCCATTTCT-AG----A
*
725288 GGAACAGGCCAAAGACAAATAGACACCATTTTGTCTGCGGCCGCATGTCACGACCTTTGGTGATT
384 GGAACAGGCCAAAGACAAATAGACACCATTTTGTCTGCAGCCGCATGTCACGACCTTTGGTGATT
*
725353 AATGCTTCGCCGTGATGAAGAGTGCATTGGCGACGGATCCGATGGCAAAATAAGTTTGTAGGGTT
449 AATGCTTCGCCGTGATGAAGAGTGCATTGGCGACGGATCCGATGGAAAAATAAGTTTGTAGGGTT
725418 TGTCCTCCCTACTAGGTTTTGGAATTTTCTAAGGCCTGACCTCCTTAGATAGGTGTAGATTGGTG
514 TG--CTCCCTACTAGGTTTTGGAATTTTCTAAGGCCTGACCTCCTTAGATAGGTGTAGATTGGTG
*
725483 TAGAGTTTGGAACAGATTTTGGAAGAATATGGTCAGTATTTCGCAATGGGCCTCTGTGCAAATTC
577 TAGAGTTTGGAACAGATTTTGGAAGAATATGGTCAGTATTTCGCAATGGGCCACTGTGCAAATTC
725548 AAGGCCTGCCACACAGGACTTAAAGATGATGAGGATGAAGAGTCATAAAAGGACCAGTACGTTGA
642 AAGGCCTGCCACACAGGACTTAAAGATGATGAGGATGAAGAGTCATAAAAGGACCAGTACGTTGA
* * * * *
725613 TTCACGGCCAACGATATTGGGTTTAAAGATGGGAAAAAGGATGTCAATATGCTGATTCACGGTTA
707 TTCACGACCAACGATAATAGGTTTAAAGATGAGAAAAAGGATGTCAATATGCTGATTCACGGTCA
* *
725678 GCAACAGTTAGACTTGAAGTTGAGAAGAATGCCAATGTGCTGATTCAAGGCCAACAGCATTGGGT
772 GCAACAGCTAGACTTGAAGATGAGAAGAATGCCAATGTGCTGATTCAAGGCCAACAGCATTGGGT
*
725743 TTTAAAAATGATGAAGGCGCCAATATGCTGAGTCAAGGCCAGCGATAGTGGACTTAAAGACGAAG
837 TTTAAAAATGATGAAGGCACCAATATGCTGAGTCAAGGCCAGCGATAGTGGACTTAAAGACGAAG
*
725808 GTGCCAATGTGTTGAGTCAAGGCCAGCGACATTGGACATAAAGATGAGGTG
902 GTGCCAATGTGTTGAGTCAAGGCCAGCGACATTGGACATAAAGATGAGGGG
*
725859 CCAATATACTGATTCAAGGCCAACTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAA
1 CCAATATGCTGATTCAAGGCCAACTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAA
* * *
725924 GGCCAACTATATTAGACTTAAATGTAAGGTGCCAATTTGCTGATTCAAGGCCAGCTATATTAGAC
66 GGCCAGCTATATTAGACTTAAA-GTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTAGAC
*
725989 ATAAAGGTGAGGTGCCAATTTGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCA
130 TTAAAGGTGAGGTGCCAATTTGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCA
726054 ATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGATAAAGGTGCCAATATGCTGATTCA
195 ATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGATAAAGGTGCCAATATGCTGATTCA
726119 AGGCCAGCTATATTCGTCCCCACATATGTCGAATCCTCCACCTACTAGCTAGGCCCTAAATTGCT
260 AGGCCAGCTATATTCGTCCCCACATATGTCGAATCCTCCACCTACTAGCTAGGCCCTAAATTGCT
726184 GAAAATTGGCCCGGACAAAATGAGATGTCTATAGCTGCCCCTCTTTGGCCATTTCT-G-GGAACA
325 GAAAATTGGCCCGGACAAAATGAGATGTCTATAGCTGCCCCTCTTTGGCCATTTCTAGAGGAACA
* * *
726247 GGCCAAAGACAAATAGACGCCATTTTGTCTGCAGCCGTATGTCATGACCTTTGGTGATTAATGCT
390 GGCCAAAGACAAATAGACACCATTTTGTCTGCAGCCGCATGTCACGACCTTTGGTGATTAATGCT
* * *
726312 TTGCCGTGATGAAGAGTGCATTGGCGACGGTTCCGATGGAAAAATGAGTTTGTAGGGTTTG-TCC
455 TCGCCGTGATGAAGAGTGCATTGGCGACGGATCCGATGGAAAAATAAGTTTGTAGGGTTTGCTCC
*
726376 CTACTAGGTTTTGGAATTTTCTAAGGCTTGACCTCCTTAGATAGGTGTAGATTGGTGTAGAGTTT
520 CTACTAGGTTTTGGAATTTTCTAAGGCCTGACCTCCTTAGATAGGTGTAGATTGGTGTAGAGTTT
* * * *
726441 GGAACAGATTTTGGAAGATTATGGTCAGTATTTTGCAATGTGCCACTGTGCAGATTCAAGGCCTG
585 GGAACAGATTTTGGAAGAATATGGTCAGTATTTCGCAATGGGCCACTGTGCAAATTCAAGGCCTG
** *
726506 CCACATTGGACTTAAAGATGATGAGGATGAAGAGTGATAAAAGGACCAGTACGTTGATTCACGAC
650 CCACACAGGACTTAAAGATGATGAGGATGAAGAGTCATAAAAGGACCAGTACGTTGATTCACGAC
* * *
726571 CAACGATAATAGGTTTAAAGATTAGAAAAAGGATTTCAATATGCTGATTCACGGTCAGTAACAGC
715 CAACGATAATAGGTTTAAAGATGAGAAAAAGGATGTCAATATGCTGATTCACGGTCAGCAACAGC
*
726636 TAGACTTGAAGATGAGAAGAATGCCAATGTGCTGATTCAAGGCCAACGGCATTGGGTTTTAAAAA
780 TAGACTTGAAGATGAGAAGAATGCCAATGTGCTGATTCAAGGCCAACAGCATTGGGTTTTAAAAA
* *
726701 TGATGAAGGCACCAATATGCTGAGTCATGGCCAGCGATATTGGACTTAAAGACGAAGGTGCCAAT
845 TGATGAAGGCACCAATATGCTGAGTCAAGGCCAGCGATAGTGGACTTAAAGACGAAGGTGCCAAT
*
726766 GTGTTGAGTCAAGGCCAGCGACATTGGACTTAAAGATGAGGGG
910 GTGTTGAGTCAAGGCCAGCGACATTGGACATAAAGATGAGGGG
* *
726809 ACAATATGCTGATTTAAGGCCAACTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAA
1 CCAATATGCTGATTCAAGGCCAACTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAA
* *
726874 GGCCAGCTATATTAGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTTGAC
66 GGCCAGCTATATTAGACTTAAA-GTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTAGAC
* * *
726939 TTAAAGGTGAGGTGACAATTTGCTGATTCAAGGCCAGCTATGTTGGACTTAAAAGTGATAAAGGT
130 TTAAAGGTGAGGTGCCAATTTGCTGATTCAAGGCCAGCTATATTGGACTT-AAAG-G-T-GAGGT
*
727004 GCCAATATGCTGATTCAAGGCCAGCTCTATT
191 GCCAATATGCTGATTCAAGGCCAGCTATATT
727035 CGTCCCCACA
Statistics
Matches: 1094, Mismatches: 77, Indels: 17
0.92 0.06 0.01
Matches are distributed among these distances:
950 579 0.53
951 4 0.00
952 1 0.00
953 125 0.11
954 34 0.03
958 1 0.00
960 312 0.29
961 38 0.03
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.27
Consensus pattern (952 bp):
CCAATATGCTGATTCAAGGCCAACTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAA
GGCCAGCTATATTAGACTTAAAGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTAGACT
TAAAGGTGAGGTGCCAATTTGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAA
TATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGATAAAGGTGCCAATATGCTGATTCAA
GGCCAGCTATATTCGTCCCCACATATGTCGAATCCTCCACCTACTAGCTAGGCCCTAAATTGCTG
AAAATTGGCCCGGACAAAATGAGATGTCTATAGCTGCCCCTCTTTGGCCATTTCTAGAGGAACAG
GCCAAAGACAAATAGACACCATTTTGTCTGCAGCCGCATGTCACGACCTTTGGTGATTAATGCTT
CGCCGTGATGAAGAGTGCATTGGCGACGGATCCGATGGAAAAATAAGTTTGTAGGGTTTGCTCCC
TACTAGGTTTTGGAATTTTCTAAGGCCTGACCTCCTTAGATAGGTGTAGATTGGTGTAGAGTTTG
GAACAGATTTTGGAAGAATATGGTCAGTATTTCGCAATGGGCCACTGTGCAAATTCAAGGCCTGC
CACACAGGACTTAAAGATGATGAGGATGAAGAGTCATAAAAGGACCAGTACGTTGATTCACGACC
AACGATAATAGGTTTAAAGATGAGAAAAAGGATGTCAATATGCTGATTCACGGTCAGCAACAGCT
AGACTTGAAGATGAGAAGAATGCCAATGTGCTGATTCAAGGCCAACAGCATTGGGTTTTAAAAAT
GATGAAGGCACCAATATGCTGAGTCAAGGCCAGCGATAGTGGACTTAAAGACGAAGGTGCCAATG
TGTTGAGTCAAGGCCAGCGACATTGGACATAAAGATGAGGGG
Found at i:726842 original size:48 final size:48
Alignment explanation
Indices: 726712--727034 Score: 394
Period size: 48 Copynumber: 6.6 Consensus size: 48
726702 GATGAAGGCA
* * * **
726712 CCAATATGCTGAGTCATGGCCAGCGATATTGGACTTAAAGACGAAGGTG
1 CCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTG-AGGTG
* * * * * * *
726761 CCAATGTGTTGAGTCAAGGCCAGCGACATTGGACTTAAAGATGAGGGG
1 CCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTG
* * *
726809 ACAATATGCTGATTTAAGGCCAACTATATTGGACTTAAAGGTGAGGTG
1 CCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTG
*
726857 CCAATATGCTGATTCAAGGCCAGCTATATTAGACTTAAAGGTGAGGTG
1 CCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTG
* *
726905 CCAATATGCTGATTCAAGGCCAGCTACATTTGACTTAAAGGTGAGGTG
1 CCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTG
* * * *
726953 ACAATTTGCTGATTCAAGGCCAGCTATGTTGGACTTAAAAGTGATAAAGGTG
1 CCAATATGCTGATTCAAGGCCAGCTATATTGGACTT-AAAG-G-T-GAGGTG
*
727005 CCAATATGCTGATTCAAGGCCAGCTCTATT
1 CCAATATGCTGATTCAAGGCCAGCTATATT
727035 CGTCCCCACA
Statistics
Matches: 238, Mismatches: 32, Indels: 5
0.87 0.12 0.02
Matches are distributed among these distances:
48 163 0.68
49 42 0.18
50 1 0.00
51 1 0.00
52 31 0.13
ACGTcount: A:0.31, C:0.17, G:0.26, T:0.26
Consensus pattern (48 bp):
CCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTG
Found at i:726942 original size:144 final size:149
Alignment explanation
Indices: 726660--727034 Score: 445
Period size: 144 Copynumber: 2.5 Consensus size: 149
726650 AGAAGAATGC
* *** ** * * ** *
726660 CAATGTGCTGATTCAAGGCCAACGGCATTGGGTTTTAAAAATGATGAAGGCACCAATATGCTGAG
1 CAATATGCTGATTCAAGGCCAACTATATT-GGACTTAAAAGTGATAAAGGTGCCAATATGCTGAT
* * * * *
726725 TCATGGCCAGCGATATTGGACTTAAAGACGAAGGTGCCAATGTGTTGAGTCAAGGCCAGCGACAT
65 TCAAGGCCAGCTATATTAGACTTAAAGACGAAGGTGCCAATATGCTGAGTCAAGGCCAGCGACAT
726790 TGGACTTAAAGATGAGGGGA
130 TGGACTTAAAGATGAGGGGA
* *
726810 CAATATGCTGATTTAAGGCCAACTATATTGGACTT-AAAG-G-T-GAGGTGCCAATATGCTGATT
1 CAATATGCTGATTCAAGGCCAACTATATTGGACTTAAAAGTGATAAAGGTGCCAATATGCTGATT
** * *
726871 CAAGGCCAGCTATATTAGACTTAAAGGTG-AGGTGCCAATATGCTGATTCAAGGCCAGCTACATT
66 CAAGGCCAGCTATATTAGACTTAAAGACGAAGGTGCCAATATGCTGAGTCAAGGCCAGCGACATT
* * *
726935 TGACTTAAAGGTGAGGTGA
131 GGACTTAAAGATGAGGGGA
* * *
726954 CAATTTGCTGATTCAAGGCCAGCTATGTTGGACTTAAAAGTGATAAAGGTGCCAATATGCTGATT
1 CAATATGCTGATTCAAGGCCAACTATATTGGACTTAAAAGTGATAAAGGTGCCAATATGCTGATT
*
727019 CAAGGCCAGCTCTATT
66 CAAGGCCAGCTATATT
727035 CGTCCCCACA
Statistics
Matches: 191, Mismatches: 30, Indels: 10
0.83 0.13 0.04
Matches are distributed among these distances:
144 78 0.41
145 44 0.23
146 2 0.01
147 2 0.01
148 37 0.19
149 4 0.02
150 24 0.13
ACGTcount: A:0.31, C:0.17, G:0.26, T:0.26
Consensus pattern (149 bp):
CAATATGCTGATTCAAGGCCAACTATATTGGACTTAAAAGTGATAAAGGTGCCAATATGCTGATT
CAAGGCCAGCTATATTAGACTTAAAGACGAAGGTGCCAATATGCTGAGTCAAGGCCAGCGACATT
GGACTTAAAGATGAGGGGA
Found at i:727667 original size:912 final size:910
Alignment explanation
Indices: 725804--730627 Score: 6685
Period size: 912 Copynumber: 5.3 Consensus size: 910
725794 ACTTAAAGAC
* * * * * * * **
725804 GAAGGTGCCAATGTGTTGAGTCAAGGCCAGCGACATTGGACATAAAGATG-AGGTGCCAATATAC
1 GAAGGCGCCAATATGCTGAGTCAAGGCCAGCGATATTGGACTTAAAGACGAAGGTGCCAATGTGT
* * * * *
725868 TGATTCAAGGCCAACTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAACTA
66 TGAGTCAAGGCCAGCGACATTGGACTTAAAGATGAGGTGCCAATATGCTGATTCAAGGCCAACTA
* * * * *
725933 TATTAGACTTAAATGTAAGGTGCCAATTTGCTGATTCAAGGCCAGCTATATTAGACATAAAGGTG
131 TATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTAGACTTAAAGGTG
* *
725998 AGGTGCCAATTTGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGA
196 AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGACAATATGCTGA
726063 TTCAAGGCCAGCTATATTGGACTTAAAGGTGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCT
261 TTCAAGGCCAGCTATATTGGACTTAAAGGTGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCT
* * *
726128 ATATTCGTCCCCACATATGTCGAATCCTCCACCTACTAGCTAGGCCCTAAATTGCTGAAAATTGG
326 CTATTCGTCCCCACATATGTCGAATCCTCCGCCTACTAGCTAGGCCCTAAATTGTTGAAAATTGG
* *
726193 CCCGGACAAAATGAGATGTCTATAGCTGCCCCTCTTTGGCCATTTCT-G-----GGAACAGGCCA
391 CCCGGACAAAATGAGGTGTCTATAGCTGCCCCTCTTTGGCCGTTTCTAGTATCAGGAACAGGCCA
* * *
726252 AAGACAAATAGACGCCATTTTGTCTGCAGCCGTATGTCATGACCTTTGGTGATTAATGCTTTGCC
456 AAGACAAATAGACACCATTTTGTCTGCAGCCGCATGTCATGACCTTTGGTGATTAATGCTTCGCC
726317 GTGATGAAGAGTGCATTGGCGACGGTTCCGATGGAAAAATGAGTTTGTAGGGTTTG---TCCCTA
521 GTGATGAAGAGTGCATTGGCGACGGTTCCGATGGAAAAAT-AGTTTGTAGGGTTTGTCCTCCCTA
*
726379 CTAGGTTTTGGAATTTTCTAAGGCTTGACCTCCTTAGATAGGTGTAGATTGGTGTAGAGTTTGGA
585 CTAGGTTTTGGAATTTTCTAAGGCCTGACCTCCTTAGATAGGTGTAGATTGGTGTAGAGTTTGGA
* * * *
726444 ACAGATTTTGGAAGATTATGGTCAGTATTTTGCAATGTGCCACTGTGCAGATTCAAGGCCTGCCA
650 ACAGATTTTGGAAGAATATGGTCAGTATTTTGCAATGGGCCTCTGTGCAAATTCAAGGCCTGCCA
* *
726509 CATTGGACTTAAAGATGATGAGGATGAAGAGTGATAAAAGGACCAGTACGTTGATTCACGACCAA
715 CACTGGACTTAAAGATGATGAGGATGAAGAGTCATAAAAGGACCAGTACGTTGATTCACGACCAA
* * * * * *
726574 CGATAATAGGTTTAAAGATTAGAAAAAGGATTTCAATATGCTGATTCACGGTCAGTAACAGCTAG
780 CGATATTGGGTTTAAAGATGAGAAAAAGGATCTCAATATGCTGATTCACGGTCAGCAACAGTTAG
726639 ACTTGAAGATGAGAAGAATGCCAATGTGCTGATTCAAGGCCAACGGCATTGGGTTTTAAAAATGA
845 ACTTGAAGATGAGAAGAATGCCAATGTGCTGATTCAAGGCCAACGGCATTGGGTTTTAAAAATGA
726704 T
910 T
* *
726705 GAAGGCACCAATATGCTGAGTCATGGCCAGCGATATTGGACTTAAAGACGAAGGTGCCAATGTGT
1 GAAGGCGCCAATATGCTGAGTCAAGGCCAGCGATATTGGACTTAAAGACGAAGGTGCCAATGTGT
* * *
726770 TGAGTCAAGGCCAGCGACATTGGACTTAAAGATGAGGGGACAATATGCTGATTTAAGGCCAACTA
66 TGAGTCAAGGCCAGCGACATTGGACTTAAAGATGAGGTGCCAATATGCTGATTCAAGGCCAACTA
726835 TATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTAGACTTAAAGGTG
131 TATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTAGACTTAAAGGTG
* * *
726900 AGGTGCCAATATGCTGATTCAAGGCCAGCTACATTTGACTTAAAGGTGAGGTGACAATTTGCTGA
196 AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGACAATATGCTGA
* *
726965 TTCAAGGCCAGCTATGTTGGACTTAAAAGTGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCT
261 TTCAAGGCCAGCTATATTGGACTTAAAGGTGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCT
*
727030 CTATTCGTCCCCACATATGTCGAATCCTCCGCCTACTAGCTAGGCCCTAAATTGTTGAAAATTGA
326 CTATTCGTCCCCACATATGTCGAATCCTCCGCCTACTAGCTAGGCCCTAAATTGTTGAAAATTGG
*
727095 CCCGGACAAAATGAGGTGTCTATAGCTGCTCCTCTTTGGCCGTTTCTGAGTATCAGGAACAGGCC
391 CCCGGACAAAATGAGGTGTCTATAGCTGCCCCTCTTTGGCCGTTTCT-AGTATCAGGAACAGGCC
* *
727160 AAAGACAAAAAGACACCATTTTGTCTGCAGCCACATGTCATGACCTTTGGTGATTAATGCTTCGC
455 AAAGACAAATAGACACCATTTTGTCTGCAGCCGCATGTCATGACCTTTGGTGATTAATGCTTCGC
* *
727225 CGTGATGAAGAGTGCATTGGCGACGGTTCCGATGGCAAAATATGTTTCTAGGGTTTGTCCTCCCT
520 CGTGATGAAGAGTGCATTGGCGACGGTTCCGATGGAAAAATA-GTTTGTAGGGTTTGTCCTCCCT
*
727290 ACTAGGTTTTGGAATTTTCTAAGGCCTGACCTCCTTAGATAGGTGTAGATTGGAGTAGAGTTTGG
584 ACTAGGTTTTGGAATTTTCTAAGGCCTGACCTCCTTAGATAGGTGTAGATTGGTGTAGAGTTTGG
* *
727355 AACAGATTTTGGAAGAATATGGTCAGTATTTCGCAATGGGCCTCTGTGTAAATTCAAGGCCTGCC
649 AACAGATTTTGGAAGAATATGGTCAGTATTTTGCAATGGGCCTCTGTGCAAATTCAAGGCCTGCC
*
727420 ACACAGGACTTAAAGATGATGAGGATGAAGAGTCATAAAAGGACCAGTACGTTGATTCACGACCA
714 ACACTGGACTTAAAGATGATGAGGATGAAGAGTCATAAAAGGACCAGTACGTTGATTCACGACCA
* * *
727485 ACGATATTGGGTTTAAAGATGGGAAAAAGGATGTCAATATGCTGATTCACGGTTAGCAACAGTTA
779 ACGATATTGGGTTTAAAGATGAGAAAAAGGATCTCAATATGCTGATTCACGGTCAGCAACAGTTA
* *
727550 GACTTGAAGTTGAGAAGAATGCCAATGTGCTGATTCAAGGCCAACAGCATTGGGTTTTAAAAATG
844 GACTTGAAGATGAGAAGAATGCCAATGTGCTGATTCAAGGCCAACGGCATTGGGTTTTAAAAATG
727615 AT
909 AT
* *
727617 GAAGGCGCCAATATGCTGAGTCAAGGCCAGCGATAGTGGACTTAAAGACGAAGGTGCCAATGGGT
1 GAAGGCGCCAATATGCTGAGTCAAGGCCAGCGATATTGGACTTAAAGACGAAGGTGCCAATGTGT
* *
727682 TGAGTCAAGGCCAGCGACATTGGACATAAAGATGAGGTGCCAATATACTGATTCAAGGCCAACTA
66 TGAGTCAAGGCCAGCGACATTGGACTTAAAGATGAGGTGCCAATATGCTGATTCAAGGCCAACTA
* *
727747 TATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTAGACTTAAATGTA
131 TATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTAGACTTAAAGGTG
* * * *
727812 AGGTGCCAATTTGCTGATTCAAGGCCAGCTATATTAGACTTAAAGGTGAGGTGCCAATTTGCTGA
196 AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGACAATATGCTGA
727877 TTCAAGGCCAGCTATATTGGACTTAAAGGTG----AGGTGCCAATATGCTGATTCAAGGCCAGCT
261 TTCAAGGCCAGCTATATTGGACTTAAAGGTGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCT
* ** ** * *** * ** * * ** * *
727938 ATATT-GGACTTA-A-AGGT-GATAAAGGT--GCC-AATATGCT--G-ATTCAA-GGCCAGCTAT
326 CTATTCGTCCCCACATATGTCG--AATCCTCCGCCTACTA-GCTAGGCCCTAAATTG-TTG-AAA
* * * * * *
727992 ATTCGTCCC---C-ACAT-A--TGTCGA-ATCCT-CCACCTACTAGCTCGGCCCTAAATTGCTGA
386 ATT-GGCCCGGACAAAATGAGGTGTCTATA-GCTGCC-CCT-CT---TTGGCCGT---TT-CT-A
** * * * * * * * *
728048 AAAT-TGG-CCCGGACAAAATGAGATGTCTATAG-CTGCCCCTCTTTGGCCATTTCTGGGAACAG
439 GTATCAGGAACAGG-CCAAA-GACA----AATAGAC--ACCAT-TTT-G-----TCT--G--CA-
* * * * * * *
728110 GCC-AAAGATAAATAGACGCCATTTTGTCTGCAGCCGCATGTCATGACCTTTG--GTGATTAATG
484 GCCGCATG-T-CAT-GA--CC----T-T-TG--G-TG-AT-TAATG--CTTCGCCGTGATGAA-G
** * ** * **** ***** * ** ***
728172 CTTCGCCGTGATGAAGA-GTGCATTGGCGATGGTTCCGAT-GGAAAAATGAGTTTGTAGGGTTTG
530 AGT-G-CAT--TGGCGACG-G--TT-CCGATGG-AAAAATAGTTTGTA-GGGTTTGT--CCTCCC
* *** ** *
728235 TCCTCCCTACTAGGTTTTGGAATTTTCTAAGGCTTGACCTCCTTAGATAGGTGTAGATTGGTGTA
583 TACTAGGT--TTTG-----GAATTTTCTAAGGCCTGACCTCCTTAGATAGGTGTAGATTGGTGTA
* * * * *
728300 GAGTTTGGAATAGATTTTGGAAGATTATGGTCAGTATTTTGCAATGTGCCACTGTGCAGATTCAA
641 GAGTTTGGAACAGATTTTGGAAGAATATGGTCAGTATTTTGCAATGGGCCTCTGTGCAAATTCAA
*
728365 GGCCTGCCACACTGGACTTAAAGATGATGAGGATGAAGAGTGATAAAAGGACCAGTACGTTGATT
706 GGCCTGCCACACTGGACTTAAAGATGATGAGGATGAAGAGTCATAAAAGGACCAGTACGTTGATT
* * * * *
728430 CACGACCAACGATACTAGGTTTAAAGATTAGAAAAAGGATTTCAATATGCTGATTCACGGTCAGT
771 CACGACCAACGATATTGGGTTTAAAGATGAGAAAAAGGATCTCAATATGCTGATTCACGGTCAGC
* *
728495 AACAGCTAGACTTGAAGATGAGAAGAATGCCAATGTGCTGATTCAAGGCCAACGGAATTGGGTTT
836 AACAGTTAGACTTGAAGATGAGAAGAATGCCAATGTGCTGATTCAAGGCCAACGGCATTGGGTTT
728560 TAAAAATGAT
901 TAAAAATGAT
* *
728570 GAAGGCACCAATATGCTGAGTCAAGGCCAGCGATATTGGACTTAAAGACGAAAGTGCCAATGTGT
1 GAAGGCGCCAATATGCTGAGTCAAGGCCAGCGATATTGGACTTAAAGACGAAGGTGCCAATGTGT
* *
728635 TGAGTCAAGGCCAGCGACATTGGACTTAAAGATGAGGTGACAATATGCTGATTTAAGGCCAACTA
66 TGAGTCAAGGCCAGCGACATTGGACTTAAAGATGAGGTGCCAATATGCTGATTCAAGGCCAACTA
728700 TATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTAGACTTAAAGGTG
131 TATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTAGACTTAAAGGTG
*
728765 AGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGGTGAGGTGACAATATGCTGA
196 AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGACAATATGCTGA
* *
728830 TTCAAGGCCAGCTATGTTGGACTTAAAGGTGATAAAGGTGCCAATATGCTGATTAAAGGCCAGCT
261 TTCAAGGCCAGCTATATTGGACTTAAAGGTGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCT
728895 CTATTCGTCCCCACATATGTCGAATCCTCCGCCTACTAGCTAGGCCCTAAATTGTTGAAAATTGG
326 CTATTCGTCCCCACATATGTCGAATCCTCCGCCTACTAGCTAGGCCCTAAATTGTTGAAAATTGG
*
728960 CCCGGACAAAATGAGGTGTCTATAGCTGCCCCTCTTTGGCCGTTTCTGAGTATCAGGAATAGGCC
391 CCCGGACAAAATGAGGTGTCTATAGCTGCCCCTCTTTGGCCGTTTCT-AGTATCAGGAACAGGCC
*
729025 AAAGACAAATAGACACCATTTTGTCTGCGGCCGCATGTCATGACCTTTGGTGATTAATGCTTCGC
455 AAAGACAAATAGACACCATTTTGTCTGCAGCCGCATGTCATGACCTTTGGTGATTAATGCTTCGC
* *
729090 CGTGATGAAGAGTGCATTGGCGACGGTTCTGATGGCAAAATAAGTTTGTAGGGTTTGTCCTCCCT
520 CGTGATGAAGAGTGCATTGGCGACGGTTCCGATGGAAAAAT-AGTTTGTAGGGTTTGTCCTCCCT
729155 ACTAGGTTTTGGAATTTTCTAAGGCCTGACCTCCTTAGATAGGTGTAGATTGGTGTAGAGTTTGG
584 ACTAGGTTTTGGAATTTTCTAAGGCCTGACCTCCTTAGATAGGTGTAGATTGGTGTAGAGTTTGG
* *
729220 AACAAATTTTGGAAGAATATGGTCAGTATTTCGCAATGGGCCTCTGTGCAAATTCAAGGCCTGCC
649 AACAGATTTTGGAAGAATATGGTCAGTATTTTGCAATGGGCCTCTGTGCAAATTCAAGGCCTGCC
* * *
729285 ACACAGGACTTAAAGATGATGAGGATGAAGAGTCATAAAATGACCAGTACGTTGATTCACGGCCA
714 ACACTGGACTTAAAGATGATGAGGATGAAGAGTCATAAAAGGACCAGTACGTTGATTCACGACCA
729350 ACGATATTGGGTTTAAAGATGAGAAAAAGGATCTCAATATGCTGATTCACGGTCAGCAACAGTTA
779 ACGATATTGGGTTTAAAGATGAGAAAAAGGATCTCAATATGCTGATTCACGGTCAGCAACAGTTA
*
729415 GACTTGAAGATGAGAATAATGCCAATGTGCTGATTCAAGGCCAACGGCATTGGGTTTTAAAAATG
844 GACTTGAAGATGAGAAGAATGCCAATGTGCTGATTCAAGGCCAACGGCATTGGGTTTTAAAAATG
729480 AT
909 AT
*
729482 GAAGGCGCCAATATGCTGAGTTAAGGCCAGCGATATTGGACTTAAAGACGAAGGTGCCAATGTGT
1 GAAGGCGCCAATATGCTGAGTCAAGGCCAGCGATATTGGACTTAAAGACGAAGGTGCCAATGTGT
* *
729547 TGAGTCAAGGCCAGCGACATTGGACTTAAAGATGAGGTGCCAAAATGTTGATTCAAGGCCAACTA
66 TGAGTCAAGGCCAGCGACATTGGACTTAAAGATGAGGTGCCAATATGCTGATTCAAGGCCAACTA
* * *
729612 TAATGGATTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTG
131 TATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTAGACTTAAAGGTG
*
729677 AGGTGCCAATATGCTGATTTAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGACAATATGCTGA
196 AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGACAATATGCTGA
** *
729742 TTCAAGAACAGCTATATTTGACTTAAAGGTGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCT
261 TTCAAGGCCAGCTATATTGGACTTAAAGGTGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCT
729807 CTATTCGTCCCCACATATGTCGAATCCTCCGCCTACTAGCTAGGCCCTAAATTGTTGAAAATTGG
326 CTATTCGTCCCCACATATGTCGAATCCTCCGCCTACTAGCTAGGCCCTAAATTGTTGAAAATTGG
* * * *
729872 CCCGAACAAAATGAGGTGTTTATAGCTACCCCTCTTTGGTCGTTTCTAAGTATCAGGAACAGGCC
391 CCCGGACAAAATGAGGTGTCTATAGCTGCCCCTCTTTGGCCGTTTCT-AGTATCAGGAACAGGCC
* * *
729937 AAAGACAAATAGACACCATTTTGTTTGCGGCCGCATGTCATGACCTTTGCTGATTAATGCTTCGC
455 AAAGACAAATAGACACCATTTTGTCTGCAGCCGCATGTCATGACCTTTGGTGATTAATGCTTCGC
* *
730002 CGTGAGGAAGAGTGCATTGGCGACGGTTCCGATGGAAAAATAAGTTTGTAGGGTTTGTCCTCCTT
520 CGTGATGAAGAGTGCATTGGCGACGGTTCCGATGGAAAAAT-AGTTTGTAGGGTTTGTCCTCCCT
730067 ACTAGGTTTTGGAATTTTCTAAGGCCTGACCTCCTTAGATAGGTGTAGATTGGTGTAGAGTTTGG
584 ACTAGGTTTTGGAATTTTCTAAGGCCTGACCTCCTTAGATAGGTGTAGATTGGTGTAGAGTTTGG
*
730132 AACAGATTTTGGAAGAATATGGTCAGTATTTTACAATGGGCCAT-TGTGCAAATTCAAGGCCTGC
649 AACAGATTTTGGAAGAATATGGTCAGTATTTTGCAATGGGCC-TCTGTGCAAATTCAAGGCCTGC
* * *
730196 CACACTGGACTTAAAGATGATGAGGATGAAGAGTCATAAAAAGACCAGTTCGTTGATTCACGGCC
713 CACACTGGACTTAAAGATGATGAGGATGAAGAGTCATAAAAGGACCAGTACGTTGATTCACGACC
*
730261 AACGATATTGGGTTTAAAGATGAGAAAAAGGATCTCAATATGCTGATTCACGGTCAGCAACAGTC
778 AACGATATTGGGTTTAAAGATGAGAAAAAGGATCTCAATATGCTGATTCACGGTCAGCAACAGTT
* *
730326 AGACTTGAAGATGAGAAGAATGCCAATGTGCTAATTCAAGGCCAACGACATTGGGTTTTAAAAAT
843 AGACTTGAAGATGAGAAGAATGCCAATGTGCTGATTCAAGGCCAACGGCATTGGGTTTTAAAAAT
730391 GAT
908 GAT
*
730394 GAAGGCGCCAATATGCTGAGTCAAGGCCAGCGATATTGGACTTAAAGACAAAGGTGCCAATGTGT
1 GAAGGCGCCAATATGCTGAGTCAAGGCCAGCGATATTGGACTTAAAGACGAAGGTGCCAATGTGT
*
730459 TGAGTCAAGGCCAGCGACATTGGACTTAAAGATGAGGTGCCAAAATGCTGATTCAAGG-CAAGCT
66 TGAGTCAAGGCCAGCGACATTGGACTTAAAGATGAGGTGCCAATATGCTGATTCAAGGCCAA-CT
* *
730523 ATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTGAAAGGT
130 ATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTAGACTTAAAGGT
*
730588 GATAAAGGTGCCAATATGCTGATTCAAGGCCAACTATATT
195 G----AGGTGCCAATATGCTGATTCAAGGCCAGCTATATT
730628 CGTCCCCACA
Statistics
Matches: 3468, Mismatches: 330, Indels: 235
0.86 0.08 0.06
Matches are distributed among these distances:
895 2 0.00
896 10 0.00
897 2 0.00
898 1 0.00
899 3 0.00
900 8 0.00
901 46 0.01
902 364 0.10
903 15 0.00
904 17 0.00
905 3 0.00
906 4 0.00
907 4 0.00
908 38 0.01
909 126 0.04
910 3 0.00
911 4 0.00
912 1937 0.56
913 1 0.00
916 36 0.01
917 2 0.00
918 1 0.00
919 5 0.00
920 6 0.00
921 16 0.00
922 6 0.00
923 2 0.00
924 5 0.00
925 3 0.00
926 2 0.00
927 5 0.00
928 2 0.00
929 12 0.00
930 3 0.00
931 3 0.00
932 1 0.00
933 1 0.00
934 3 0.00
935 3 0.00
936 12 0.00
937 2 0.00
938 5 0.00
939 2 0.00
940 3 0.00
941 5 0.00
942 2 0.00
943 6 0.00
944 17 0.00
945 5 0.00
946 5 0.00
947 1 0.00
948 2 0.00
949 3 0.00
953 569 0.16
954 1 0.00
955 3 0.00
956 3 0.00
957 37 0.01
958 4 0.00
959 4 0.00
960 3 0.00
961 16 0.00
962 15 0.00
963 7 0.00
964 4 0.00
965 8 0.00
966 3 0.00
967 1 0.00
968 2 0.00
969 10 0.00
970 3 0.00
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.27
Consensus pattern (910 bp):
GAAGGCGCCAATATGCTGAGTCAAGGCCAGCGATATTGGACTTAAAGACGAAGGTGCCAATGTGT
TGAGTCAAGGCCAGCGACATTGGACTTAAAGATGAGGTGCCAATATGCTGATTCAAGGCCAACTA
TATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTAGACTTAAAGGTG
AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGACAATATGCTGA
TTCAAGGCCAGCTATATTGGACTTAAAGGTGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCT
CTATTCGTCCCCACATATGTCGAATCCTCCGCCTACTAGCTAGGCCCTAAATTGTTGAAAATTGG
CCCGGACAAAATGAGGTGTCTATAGCTGCCCCTCTTTGGCCGTTTCTAGTATCAGGAACAGGCCA
AAGACAAATAGACACCATTTTGTCTGCAGCCGCATGTCATGACCTTTGGTGATTAATGCTTCGCC
GTGATGAAGAGTGCATTGGCGACGGTTCCGATGGAAAAATAGTTTGTAGGGTTTGTCCTCCCTAC
TAGGTTTTGGAATTTTCTAAGGCCTGACCTCCTTAGATAGGTGTAGATTGGTGTAGAGTTTGGAA
CAGATTTTGGAAGAATATGGTCAGTATTTTGCAATGGGCCTCTGTGCAAATTCAAGGCCTGCCAC
ACTGGACTTAAAGATGATGAGGATGAAGAGTCATAAAAGGACCAGTACGTTGATTCACGACCAAC
GATATTGGGTTTAAAGATGAGAAAAAGGATCTCAATATGCTGATTCACGGTCAGCAACAGTTAGA
CTTGAAGATGAGAAGAATGCCAATGTGCTGATTCAAGGCCAACGGCATTGGGTTTTAAAAATGAT
Found at i:727739 original size:48 final size:48
Alignment explanation
Indices: 727614--727994 Score: 485
Period size: 48 Copynumber: 7.8 Consensus size: 48
727604 TTTTAAAAAT
* * * *
727614 GATGAAGGCGCCAATATGCTGAGTCAAGGCCAGCGATAGTGGACTTAAA
1 GATG-AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
* ** * * * * *
727663 GACGAAGGTGCCAATGGGTTGAGTCAAGGCCAGCGACATTGGACATAAA
1 GATG-AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
* *
727712 GATGAGGTGCCAATATACTGATTCAAGGCCAACTATATTGGACTTAAA
1 GATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
* *
727760 GGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTAGACTTAAA
1 GATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
* * *
727808 TG-TAAGGTGCCAATTTGCTGATTCAAGGCCAGCTATATTAGACTTAAA
1 -GATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
* *
727856 GGTGAGGTGCCAATTTGCTGATTCAAGGCCAGCTATATTGGACTTAAA
1 GATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
*
727904 GGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
1 GATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
*
727952 GGTGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATT
1 ---GAT-GAGGTGCCAATATGCTGATTCAAGGCCAGCTATATT
727995 CGTCCCCACA
Statistics
Matches: 297, Mismatches: 29, Indels: 9
0.89 0.09 0.03
Matches are distributed among these distances:
47 1 0.00
48 214 0.72
49 45 0.15
51 2 0.01
52 35 0.12
ACGTcount: A:0.31, C:0.17, G:0.26, T:0.25
Consensus pattern (48 bp):
GATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
Found at i:728612 original size:953 final size:955
Alignment explanation
Indices: 726721--728899 Score: 3554
Period size: 953 Copynumber: 2.3 Consensus size: 955
726711 ACCAATATGC
* * * * * * * *
726721 TGAGTCATGGCCAGCGATATTGGACTTAAAGACGAAGGTGCCAATGTGTTGAGTCAAGGCCAGCG
1 TGAGTCAAGGCCAGCGACATTGGACTTAAAGATG-AGGTGCCAATATGCTGATTCAAGGCCAACT
* * * * * * *
726786 ACATTGGACTTAAAGATGAGGGGACAATATGCTGATTTAAGGCCAACTATATTGGACTTAAAGGT
65 ATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTAGACTTAAAGGT
726851 GAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTAGACTTAAAGGTGAGGTGCCAATATGCTG
130 GAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTAGACTTAAAGGTGAGGTGCCAATATGCTG
* * * * *
726916 ATTCAAGGCCAGCTACATTTGACTTAAAGGTGAGGTGACAATTTGCTGATTCAAGGCCAGCTATG
195 ATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATA
*
726981 TTGGACTTAAAAGTGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTCTATTCGTCCCCACAT
260 TTGGACTTAAAAGTGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTCGTCCCCACAT
* * *
727046 ATGTCGAATCCTCCGCCTACTAGCTAGGCCCTAAATTGTTGAAAATTGACCCGGACAAAATGAGG
325 ATGTCGAATCCTCCACCTACTAGCTAGGCCCTAAATTGCTGAAAATTGACCCGGACAAAATGAGA
* *
727111 TGTCTATAGCTGCTCCTCTTTGGCCGTTTCTGAGTATCAGGAACAGGCCAAAGACAAAAAGACAC
390 TGTCTATAGCTGCCCCTCTTTGGCCATTTCT-AG----AGGAACAGGCCAAAGACAAAAAGACAC
727176 CATTTTGTCTGCAGCCACATGTCATGACCTTTGGTGATTAATGCTTCGCCGTGATGAAGAGTGCA
450 CATTTTGTCTGCAGCCACATGTCATGACCTTTGGTGATTAATGCTTCGCCGTGATGAAGAGTGCA
*
727241 TTGGCGACGGTTCCGATGGCAAAATATGTTTCTAGGGTTTGTCCTCCCTACTAGGTTTTGGAATT
515 TTGGCGACGGTTCCGATGGAAAAATATGTTTCTAGGGTTTGTCCTCCCTACTAGGTTTTGGAATT
727306 TTCTAAGGCCTGACCTCCTTAGATAGGTGTAGATTGGAGTAGAGTTTGGAACAGATTTTGGAAGA
580 TTCTAAGGCCTGACCTCCTTAGATAGGTGTAGATTGGAGTAGAGTTTGGAACAGATTTTGGAAGA
* *
727371 ATATGGTCAGTATTTCGCAATGGGCCTCTGTGTAAATTCAAGGCCTGCCACACAGGACTTAAAGA
645 ATATGGTCAGTATTTCGCAATGGGCCACTGTGCAAATTCAAGGCCTGCCACACAGGACTTAAAGA
* *
727436 TGATGAGGATGAAGAGTCATAAAAGGACCAGTACGTTGATTCACGACCAACGATATTGGGTTTAA
710 TGATGAGGATGAAGAGTCATAAAAGGACCAGTACGTTGATTCACGACCAACGATACTAGGTTTAA
* * * *
727501 AGATGGGAAAAAGGATGTCAATATGCTGATTCACGGTTAGCAACAGTTAGACTTGAAGTTGAGAA
775 AGATGAGAAAAAGGATGTCAATATGCTGATTCACGGTCAGCAACAGCTAGACTTGAAGATGAGAA
* *
727566 GAATGCCAATGTGCTGATTCAAGGCCAACAGCATTGGGTTTTAAAAATGATGAAGGCGCCAATAT
840 GAATGCCAATGTGCTGATTCAAGGCCAACAGAATTGGGTTTTAAAAATGATGAAGGCACCAATAT
*
727631 GCTGAGTCAAGGCCAGCGATAGTGGACTTAAAGACGAAGGTGCCAATGGGT
905 GCTGAGTCAAGGCCAGCGATAGTGGACTTAAAGACGAAAGTGCCAATGGGT
* *
727682 TGAGTCAAGGCCAGCGACATTGGACATAAAGATGAGGTGCCAATATACTGATTCAAGGCCAACTA
1 TGAGTCAAGGCCAGCGACATTGGACTTAAAGATGAGGTGCCAATATGCTGATTCAAGGCCAACTA
* *
727747 TATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTAGACTTAAATGTA
66 TATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTAGACTTAAAGGTG
* *
727812 AGGTGCCAATTTGCTGATTCAAGGCCAGCTATATTAGACTTAAAGGTGAGGTGCCAATTTGCTGA
131 AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTAGACTTAAAGGTGAGGTGCCAATATGCTGA
727877 TTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATAT
196 TTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATAT
*
727942 TGGACTTAAAGGTGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTCGTCCCCACATA
261 TGGACTTAAAAGTGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTCGTCCCCACATA
* *
728007 TGTCGAATCCTCCACCTACTAGCTCGGCCCTAAATTGCTGAAAATTGGCCCGGACAAAATGAGAT
326 TGTCGAATCCTCCACCTACTAGCTAGGCCCTAAATTGCTGAAAATTGACCCGGACAAAATGAGAT
* * *
728072 GTCTATAGCTGCCCCTCTTTGGCCATTTCT-G-GGAACAGGCCAAAGATAAATAGACGCCATTTT
391 GTCTATAGCTGCCCCTCTTTGGCCATTTCTAGAGGAACAGGCCAAAGACAAAAAGACACCATTTT
*
728135 GTCTGCAGCCGCATGTCATGACCTTTGGTGATTAATGCTTCGCCGTGATGAAGAGTGCATTGGCG
456 GTCTGCAGCCACATGTCATGACCTTTGGTGATTAATGCTTCGCCGTGATGAAGAGTGCATTGGCG
* *
728200 ATGGTTCCGATGGAAAAATGA-GTTTGTAGGGTTTGTCCTCCCTACTAGGTTTTGGAATTTTCTA
521 ACGGTTCCGATGGAAAAAT-ATGTTTCTAGGGTTTGTCCTCCCTACTAGGTTTTGGAATTTTCTA
* * * *
728264 AGGCTTGACCTCCTTAGATAGGTGTAGATTGGTGTAGAGTTTGGAATAGATTTTGGAAGATTATG
585 AGGCCTGACCTCCTTAGATAGGTGTAGATTGGAGTAGAGTTTGGAACAGATTTTGGAAGAATATG
* * * *
728329 GTCAGTATTTTGCAATGTGCCACTGTGCAGATTCAAGGCCTGCCACACTGGACTTAAAGATGATG
650 GTCAGTATTTCGCAATGGGCCACTGTGCAAATTCAAGGCCTGCCACACAGGACTTAAAGATGATG
* *
728394 AGGATGAAGAGTGATAAAAGGACCAGTACGTTGATTCACGACCAACGATACTAGGTTTAAAGATT
715 AGGATGAAGAGTCATAAAAGGACCAGTACGTTGATTCACGACCAACGATACTAGGTTTAAAGATG
* *
728459 AGAAAAAGGATTTCAATATGCTGATTCACGGTCAGTAACAGCTAGACTTGAAGATGAGAAGAATG
780 AGAAAAAGGATGTCAATATGCTGATTCACGGTCAGCAACAGCTAGACTTGAAGATGAGAAGAATG
*
728524 CCAATGTGCTGATTCAAGGCCAACGGAATTGGGTTTTAAAAATGATGAAGGCACCAATATGCTGA
845 CCAATGTGCTGATTCAAGGCCAACAGAATTGGGTTTTAAAAATGATGAAGGCACCAATATGCTGA
* *
728589 GTCAAGGCCAGCGATATTGGACTTAAAGACGAAAGTGCCAATGTGT
910 GTCAAGGCCAGCGATAGTGGACTTAAAGACGAAAGTGCCAATGGGT
* *
728635 TGAGTCAAGGCCAGCGACATTGGACTTAAAGATGAGGTGACAATATGCTGATTTAAGGCCAACTA
1 TGAGTCAAGGCCAGCGACATTGGACTTAAAGATGAGGTGCCAATATGCTGATTCAAGGCCAACTA
728700 TATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTAGACTTAAAGGTG
66 TATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTAGACTTAAAGGTG
* * *
728765 AGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGGTGAGGTGACAATATGCTGA
131 AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTAGACTTAAAGGTGAGGTGCCAATATGCTGA
* *
728830 TTCAAGGCCAGCTATGTTGGACTTAAAGGTGATAAAGGTGCCAATATGCTGATTAAAGGCCAGCT
196 TTCAAGGCCAGCTATATTGGACTTAAAGGTG----AGGTGCCAATATGCTGATTCAAGGCCAGCT
*
728895 CTATT
257 ATATT
728900 CGTCCCCACA
Statistics
Matches: 1131, Mismatches: 82, Indels: 14
0.92 0.07 0.01
Matches are distributed among these distances:
953 711 0.63
954 1 0.00
957 33 0.03
958 1 0.00
960 355 0.31
961 30 0.03
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.27
Consensus pattern (955 bp):
TGAGTCAAGGCCAGCGACATTGGACTTAAAGATGAGGTGCCAATATGCTGATTCAAGGCCAACTA
TATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTAGACTTAAAGGTG
AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTAGACTTAAAGGTGAGGTGCCAATATGCTGA
TTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATAT
TGGACTTAAAAGTGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTCGTCCCCACATA
TGTCGAATCCTCCACCTACTAGCTAGGCCCTAAATTGCTGAAAATTGACCCGGACAAAATGAGAT
GTCTATAGCTGCCCCTCTTTGGCCATTTCTAGAGGAACAGGCCAAAGACAAAAAGACACCATTTT
GTCTGCAGCCACATGTCATGACCTTTGGTGATTAATGCTTCGCCGTGATGAAGAGTGCATTGGCG
ACGGTTCCGATGGAAAAATATGTTTCTAGGGTTTGTCCTCCCTACTAGGTTTTGGAATTTTCTAA
GGCCTGACCTCCTTAGATAGGTGTAGATTGGAGTAGAGTTTGGAACAGATTTTGGAAGAATATGG
TCAGTATTTCGCAATGGGCCACTGTGCAAATTCAAGGCCTGCCACACAGGACTTAAAGATGATGA
GGATGAAGAGTCATAAAAGGACCAGTACGTTGATTCACGACCAACGATACTAGGTTTAAAGATGA
GAAAAAGGATGTCAATATGCTGATTCACGGTCAGCAACAGCTAGACTTGAAGATGAGAAGAATGC
CAATGTGCTGATTCAAGGCCAACAGAATTGGGTTTTAAAAATGATGAAGGCACCAATATGCTGAG
TCAAGGCCAGCGATAGTGGACTTAAAGACGAAAGTGCCAATGGGT
Found at i:728707 original size:48 final size:48
Alignment explanation
Indices: 728577--728899 Score: 403
Period size: 48 Copynumber: 6.6 Consensus size: 48
728567 GATGAAGGCA
* * * *
728577 CCAATATGCTGAGTCAAGGCCAGCGATATTGGACTTAAAGACGAAAGTG
1 CCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATG-AGGTG
* * * * *
728626 CCAATGTGTTGAGTCAAGGCCAGCGACATTGGACTTAAAGATGAGGTG
1 CCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAGGTG
* * * *
728674 ACAATATGCTGATTTAAGGCCAACTATATTGGACTTAAAGGTGAGGTG
1 CCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAGGTG
* *
728722 CCAATATGCTGATTCAAGGCCAGCTATATTAGACTTAAAGGTGAGGTG
1 CCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAGGTG
* *
728770 CCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGGTGAGGTG
1 CCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAGGTG
* * *
728818 ACAATATGCTGATTCAAGGCCAGCTATGTTGGACTTAAAGGTGATAAAGGTG
1 CCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA---GAT-GAGGTG
* *
728870 CCAATATGCTGATTAAAGGCCAGCTCTATT
1 CCAATATGCTGATTCAAGGCCAGCTATATT
728900 CGTCCCCACA
Statistics
Matches: 241, Mismatches: 29, Indels: 5
0.88 0.11 0.02
Matches are distributed among these distances:
48 169 0.70
49 39 0.16
51 2 0.01
52 31 0.13
ACGTcount: A:0.32, C:0.17, G:0.26, T:0.26
Consensus pattern (48 bp):
CCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAGGTG
Found at i:728815 original size:144 final size:146
Alignment explanation
Indices: 728577--728899 Score: 461
Period size: 144 Copynumber: 2.2 Consensus size: 146
728567 GATGAAGGCA
* * * * *
728577 CCAATATGCTGAGTCAAGGCCAGCGATATTGGACTTAAAGACGAAAGTGCCAATGTGTTGAGTCA
1 CCAATATGCTGATTCAAGGCCAGCTATATTAGACTTAAAGACGAAAGTGCCAATATGCTGAGTCA
*
728642 AGGCCAGCGACATTGGACTTAAAGATGAGGTGACAATATGCTGATTTAAGGCCAACTATATTGGA
66 AGGCCAGCGACATTGGACTTAAAGATGAGGTGACAATATGCTGATTCAAGGCCAACTATATTGGA
728707 CTTAAAGGTG-AGGTG
131 CTTAAAGGTGAAGGTG
** * *
728722 CCAATATGCTGATTCAAGGCCAGCTATATTAGACTTAAAGGTG-AGGTGCCAATATGCTGATTCA
1 CCAATATGCTGATTCAAGGCCAGCTATATTAGACTTAAAGACGAAAGTGCCAATATGCTGAGTCA
* * * *
728786 AGGCCAGCTACATTGGACTTAAAGGTGAGGTGACAATATGCTGATTCAAGGCCAGCTATGTTGGA
66 AGGCCAGCGACATTGGACTTAAAGATGAGGTGACAATATGCTGATTCAAGGCCAACTATATTGGA
728851 CTTAAAGGTGATAAAGGTG
131 CTTAAAGGTG---AAGGTG
* *
728870 CCAATATGCTGATTAAAGGCCAGCTCTATT
1 CCAATATGCTGATTCAAGGCCAGCTATATT
728900 CGTCCCCACA
Statistics
Matches: 158, Mismatches: 16, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
144 87 0.55
145 38 0.24
148 33 0.21
ACGTcount: A:0.32, C:0.17, G:0.26, T:0.26
Consensus pattern (146 bp):
CCAATATGCTGATTCAAGGCCAGCTATATTAGACTTAAAGACGAAAGTGCCAATATGCTGAGTCA
AGGCCAGCGACATTGGACTTAAAGATGAGGTGACAATATGCTGATTCAAGGCCAACTATATTGGA
CTTAAAGGTGAAGGTG
Found at i:729604 original size:48 final size:48
Alignment explanation
Indices: 729479--729811 Score: 389
Period size: 48 Copynumber: 6.8 Consensus size: 48
729469 TTTTAAAAAT
* *
729479 GATGAAGGCGCCAATATGCTGAGTT-AAGGCCAGCGATATTGGACTTAAA
1 GATG-AGGTGCCAATATGCTGA-TTCAAGGCCAGCTATATTGGACTTAAA
* * * * * *
729528 GACGAAGGTGCCAATGTGTTGAGTCAAGGCCAGCGACATTGGACTTAAA
1 GATG-AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
* * * * *
729577 GATGAGGTGCCAAAATGTTGATTCAAGGCCAACTATAATGGATTTAAA
1 GATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
*
729625 GGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
1 GATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
* *
729673 GGTGAGGTGCCAATATGCTGATTTAAGGCCAGCTATATTGGACTTAAA
1 GATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
* * ** *
729721 GGTGAGGTGACAATATGCTGATTCAAGAACAGCTATATTTGACTTAAA
1 GATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
* *
729769 GGTGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTCTATT
1 ---GAT-GAGGTGCCAATATGCTGATTCAAGGCCAGCTATATT
729812 CGTCCCCACA
Statistics
Matches: 246, Mismatches: 33, Indels: 7
0.86 0.12 0.02
Matches are distributed among these distances:
48 169 0.69
49 44 0.18
51 2 0.01
52 31 0.13
ACGTcount: A:0.32, C:0.16, G:0.26, T:0.26
Consensus pattern (48 bp):
GATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
Found at i:729654 original size:96 final size:97
Alignment explanation
Indices: 729434--729811 Score: 393
Period size: 96 Copynumber: 3.8 Consensus size: 97
729424 ATGAGAATAA
* * * ** * *
729434 TGCCAATGTGCTGATTCAAGGCCAACGGCATTGGGTTTTAAAAATGATGAAGGCGCCAATATGCT
1 TGCCAATATGCTGATTCAAGGCCAGCGACATT-GGACTT--AAAGGATG-AGGTGCCAATATGCT
* **
729499 GAGTT-AAGGCCAGCGATATTGGACTTAAAGACGAAGG
62 GA-TTCAAGGCCAGCTATATTGGACTTAAAGGTG-AGG
* * * * *
729536 TGCCAATGTGTTGAGTCAAGGCCAGCGACATTGGACTTAAA-GATGAGGTGCCAAAATGTTGATT
1 TGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGGATGAGGTGCCAATATGCTGATT
* * *
729600 CAAGGCCAACTATAATGGATTTAAAGGTGAGG
66 CAAGGCCAGCTATATTGGACTTAAAGGTGAGG
* *
729632 TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGG-TGAGGTGCCAATATGCTGATT
1 TGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGGATGAGGTGCCAATATGCTGATT
*
729696 TAAGGCCAGCTATATTGGACTTAAAGGTGAGG
66 CAAGGCCAGCTATATTGGACTTAAAGGTGAGG
* ** * * * *
729728 TGACAATATGCTGATTCAAGAACAGCTATATTTGACTTAAAGGTGATAAAGGTGCCAATATGCTG
1 TGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAA-G-GAT-GAGGTGCCAATATGCTG
*
729793 ATTCAAGGCCAGCTCTATT
63 ATTCAAGGCCAGCTATATT
729812 CGTCCCCACA
Statistics
Matches: 237, Mismatches: 33, Indels: 14
0.83 0.12 0.05
Matches are distributed among these distances:
96 125 0.53
97 38 0.16
98 5 0.02
99 4 0.02
100 33 0.14
101 4 0.02
102 28 0.12
ACGTcount: A:0.31, C:0.16, G:0.26, T:0.26
Consensus pattern (97 bp):
TGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGGATGAGGTGCCAATATGCTGATT
CAAGGCCAGCTATATTGGACTTAAAGGTGAGG
Found at i:730516 original size:48 final size:48
Alignment explanation
Indices: 730346--730619 Score: 269
Period size: 48 Copynumber: 5.5 Consensus size: 48
730336 ATGAGAAGAA
* * * * **
730346 TGCCAATGTGCTAATTCAAGGCCAACGACATTGGGTTTTAAAAATGATGAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATT-GGACTT--AAA-GATG-AGG
* * **
730399 CGCCAATATGCTGAGTCAAGGCCAGCGATATTGGACTTAAAGACAAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGA-TGAGG
* * * *
730448 TGCCAATGTGTTGAGTCAAGGCCAGCGACATTGGACTTAAAGATGAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAGG
* * * *
730496 TGCCAAAATGCTGATTCAAGGCAAGCTATATTGGACTTAAAGGTGAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAGG
* * *
730544 TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTGAAAGGTGATAAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAA---GAT-GAGG
730596 TGCCAATATGCTGATTCAAGGCCA
1 TGCCAATATGCTGATTCAAGGCCA
730620 ACTATATTCG
Statistics
Matches: 187, Mismatches: 29, Indels: 11
0.82 0.13 0.05
Matches are distributed among these distances:
48 81 0.43
49 44 0.24
50 3 0.02
51 2 0.01
52 31 0.17
53 26 0.14
ACGTcount: A:0.32, C:0.17, G:0.27, T:0.24
Consensus pattern (48 bp):
TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAGG
Found at i:731333 original size:13 final size:13
Alignment explanation
Indices: 731315--731339 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
731305 ACATAAGTTT
731315 TGTATCGATACAA
1 TGTATCGATACAA
731328 TGTATCGATACA
1 TGTATCGATACA
731340 TAAGTATTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:731341 original size:32 final size:32
Alignment explanation
Indices: 731296--731358 Score: 108
Period size: 32 Copynumber: 2.0 Consensus size: 32
731286 TTCAACAATT
*
731296 TGTATCGACACATAAGTTTTGTATCGATACAA
1 TGTATCGACACATAAGTATTGTATCGATACAA
*
731328 TGTATCGATACATAAGTATTGTATCGATACA
1 TGTATCGACACATAAGTATTGTATCGATACA
731359 TAATTAGCTA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.35, C:0.14, G:0.16, T:0.35
Consensus pattern (32 bp):
TGTATCGACACATAAGTATTGTATCGATACAA
Found at i:731352 original size:19 final size:19
Alignment explanation
Indices: 731295--731361 Score: 74
Period size: 19 Copynumber: 3.8 Consensus size: 19
731285 ATTCAACAAT
* *
731295 TTGTATCGACACATAAGTT
1 TTGTATCGATACATAAGTA
731314 TTGTATCGATAC---A--A
1 TTGTATCGATACATAAGTA
731328 -TGTATCGATACATAAGTA
1 TTGTATCGATACATAAGTA
731346 TTGTATCGATACATAA
1 TTGTATCGATACATAA
731362 TTAGCTACTG
Statistics
Matches: 40, Mismatches: 2, Indels: 12
0.74 0.04 0.22
Matches are distributed among these distances:
13 11 0.28
16 2 0.05
18 1 0.03
19 26 0.65
ACGTcount: A:0.36, C:0.13, G:0.15, T:0.36
Consensus pattern (19 bp):
TTGTATCGATACATAAGTA
Found at i:731419 original size:13 final size:13
Alignment explanation
Indices: 731401--731426 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
731391 CATTTTTCTG
731401 TGTATCGATACAT
1 TGTATCGATACAT
731414 TGTATCGATACAT
1 TGTATCGATACAT
731427 GGATCTTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:731423 original size:33 final size:33
Alignment explanation
Indices: 731381--731447 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
731371 GCCAAGGAAA
***
731381 TGTATCGATACATTTTTCTGTGTATCGATACAT
1 TGTATCGATACATGGATCTGTGTATCGATACAT
*
731414 TGTATCGATACATGGATCTTTGTATCGATACAT
1 TGTATCGATACATGGATCTGTGTATCGATACAT
731447 T
1 T
731448 TGGAAATTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.25, C:0.15, G:0.16, T:0.43
Consensus pattern (33 bp):
TGTATCGATACATGGATCTGTGTATCGATACAT
Found at i:733915 original size:27 final size:27
Alignment explanation
Indices: 733852--733926 Score: 98
Period size: 27 Copynumber: 2.8 Consensus size: 27
733842 TTTCTTCACA
*
733852 ATCGGGGATACTGCAACCCCGTTAATC
1 ATCGGGGATACTCCAACCCCGTTAATC
* *
733879 ATCGGAGATACTCCAACCCCGTT-ATT
1 ATCGGGGATACTCCAACCCCGTTAATC
*
733905 TTCGAGGGATACTCCAACCCCG
1 ATCG-GGGATACTCCAACCCCG
733927 ACTTTATTTC
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
26 5 0.12
27 37 0.88
ACGTcount: A:0.25, C:0.32, G:0.20, T:0.23
Consensus pattern (27 bp):
ATCGGGGATACTCCAACCCCGTTAATC
Found at i:733971 original size:51 final size:51
Alignment explanation
Indices: 733912--734129 Score: 197
Period size: 52 Copynumber: 4.2 Consensus size: 51
733902 ATTTTCGAGG
* * *** *
733912 GATACTCCAACCCCGACTTTATTTCCAAAATATTGATTTTTCATAATCGGA
1 GATACTCCAACCCCGATTTTATTTCCAAAACACCAATTTTTCACAATCGGA
* * * * * *
733963 GATACTCCAACCTCGGTTTTATTGCTAAAACACTAATTTTTCCACAATCGGG
1 GATACTCCAACCCCGATTTTATTTCCAAAACACCAATTTTT-CACAATCGGA
* * * ** *
734015 GATACTCCAACCCCGGTTTTATTTTCAAAACACCAATTTTCCTTTAATCGGG
1 GATACTCCAACCCCGATTTTATTTCCAAAACACCAATTTTTC-ACAATCGGA
* * *
734067 GATACTCCAACTCTGA-TTTATTTCCAAAAATACCAATTTTTCACAATC-GA
1 GATACTCCAACCCCGATTTTATTTCC-AAAACACCAATTTTTCACAATCGGA
734117 GGATACTCCAACC
1 -GATACTCCAACC
734130 TCGTTATTTC
Statistics
Matches: 135, Mismatches: 28, Indels: 8
0.79 0.16 0.05
Matches are distributed among these distances:
50 1 0.01
51 57 0.42
52 77 0.57
ACGTcount: A:0.31, C:0.26, G:0.11, T:0.33
Consensus pattern (51 bp):
GATACTCCAACCCCGATTTTATTTCCAAAACACCAATTTTTCACAATCGGA
Found at i:734029 original size:103 final size:103
Alignment explanation
Indices: 733910--734129 Score: 255
Period size: 103 Copynumber: 2.1 Consensus size: 103
733900 TTATTTTCGA
* *** *
733910 GGGATACTCCAACCCCGACTTTATTTCCAAAATATTGATTTTTC-ATAATCGGAGATACTCCAAC
1 GGGATACTCCAACCCCGACTTTATTTCCAAAACACCAATTTTCCTATAATCGGAGATACTCCAA-
* * * *
733974 CTCGGTTTTA-TTGCTAAAACACTAATTTTTCCACAATCG
65 CTCGGATTTATTTCCAAAAACACCAATTTTT-CACAATCG
** * * *
734013 GGGATACTCCAACCCCGGTTTTATTTTCAAAACACCAATTTTCCTTTAATCGGGGATACTCCAAC
1 GGGATACTCCAACCCCGACTTTATTTCCAAAACACCAATTTTCCTATAATCGGAGATACTCCAAC
* *
734078 TCTGATTTATTTCCAAAAATACCAATTTTTCACAATCG
66 TCGGATTTATTTCCAAAAACACCAATTTTTCACAATCG
*
734116 AGGATACTCCAACC
1 GGGATACTCCAACC
734130 TCGTTATTTC
Statistics
Matches: 98, Mismatches: 17, Indels: 4
0.82 0.14 0.03
Matches are distributed among these distances:
103 65 0.66
104 33 0.34
ACGTcount: A:0.30, C:0.25, G:0.11, T:0.33
Consensus pattern (103 bp):
GGGATACTCCAACCCCGACTTTATTTCCAAAACACCAATTTTCCTATAATCGGAGATACTCCAAC
TCGGATTTATTTCCAAAAACACCAATTTTTCACAATCG
Found at i:734148 original size:28 final size:30
Alignment explanation
Indices: 734112--734185 Score: 102
Period size: 28 Copynumber: 2.6 Consensus size: 30
734102 ATTTTTCACA
* *
734112 ATCGAGGATACTCCAACCTCGTTA-TTTC-
1 ATCGGGGATACTCCAACCCCGTTACTTTCG
734140 ATCGGGGATACTCCAACCCCGTTACTTTCG
1 ATCGGGGATACTCCAACCCCGTTACTTTCG
734170 A--GGGGATACTCCAACC
1 ATCGGGGATACTCCAACC
734186 ACGGCTTTAT
Statistics
Matches: 42, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
28 37 0.88
29 4 0.10
30 1 0.02
ACGTcount: A:0.24, C:0.31, G:0.19, T:0.26
Consensus pattern (30 bp):
ATCGGGGATACTCCAACCCCGTTACTTTCG
Found at i:734206 original size:262 final size:262
Alignment explanation
Indices: 733741--734236 Score: 737
Period size: 262 Copynumber: 1.9 Consensus size: 262
733731 TTCTCAATTC
* * * *
733741 TCCACAATCGGGGATATTCCAACTCCAATTTTATTTTCAAAACACTAATTTTCTATAATTAGGGA
1 TCCACAATCGGGGATACTCCAACCCCAATTTTATTTTCAAAACACCAATTTTCTATAATCAGGGA
* * *
733806 TACTCTAACTCCGATTTTATTTCCAAAAAACACCAATTTCTTCACAATCGGGGATACTGCAACCC
66 TACTCCAACTCCGATTTTATTTCCAAAAAACACCAATTTCTTCACAATCGAGGATACTCCAACCC
* * *
733871 CGTTAATCATCGGAGATACTCCAACCCCGTTATTTTCGAGGGATACTCCAACCCCGACTTTATTT
131 CGTTAATCATCGGAGATACTCCAACCCCGTTACTTTCGAGGGATACTCCAACCACGACTTTATTC
*
733936 CCAAAATATTGATTTTTCATAATCGGAGATACTCCAACCTCGGTTTTATTGCTAAAACACTAATT
196 CCAAAATATTGATTTCTCATAATCGGAGATACTCCAACCTCGGTTTTATTGCTAAAACACTAATT
734001 TT
261 TT
** * *
734003 TCCACAATCGGGGATACTCCAACCCCGGTTTTATTTTCAAAACACCAATTTTCCTTTAATCGGGG
1 TCCACAATCGGGGATACTCCAACCCCAATTTTATTTTCAAAACACCAATTTT-CTATAATCAGGG
* *
734068 ATACTCCAACTCTGA-TTTATTTCC-AAAAATACCAATTT-TTCACAATCGAGGATACTCCAACC
65 ATACTCCAACTCCGATTTTATTTCCAAAAAACACCAATTTCTTCACAATCGAGGATACTCCAACC
* * * *
734130 TCGTTATTTCATCGGGGATACTCCAACCCCGTTACTTTCGAGGGGATACTCCAACCACGGCTTTA
130 CCGTTA-ATCATCGGAGATACTCCAACCCCGTTACTTTCGA-GGGATACTCCAACCACGACTTTA
* *
734195 TTCCCAAAATATTGATTTCTCATAATTGGGGATACTCCAACC
193 TTCCCAAAATATTGATTTCTCATAATCGGAGATACTCCAACC
734237 CCGTTATTTC
Statistics
Matches: 208, Mismatches: 23, Indels: 6
0.88 0.10 0.03
Matches are distributed among these distances:
260 27 0.13
261 44 0.21
262 115 0.55
263 22 0.11
ACGTcount: A:0.30, C:0.26, G:0.12, T:0.32
Consensus pattern (262 bp):
TCCACAATCGGGGATACTCCAACCCCAATTTTATTTTCAAAACACCAATTTTCTATAATCAGGGA
TACTCCAACTCCGATTTTATTTCCAAAAAACACCAATTTCTTCACAATCGAGGATACTCCAACCC
CGTTAATCATCGGAGATACTCCAACCCCGTTACTTTCGAGGGATACTCCAACCACGACTTTATTC
CCAAAATATTGATTTCTCATAATCGGAGATACTCCAACCTCGGTTTTATTGCTAAAACACTAATT
TT
Found at i:735389 original size:48 final size:48
Alignment explanation
Indices: 735264--735547 Score: 345
Period size: 48 Copynumber: 5.8 Consensus size: 48
735254 TTTTGAAAAT
* * * *
735264 GATGAAGGCGCCAATATGTTGAGTCAAGGCCAGCGATATTGGACTTAAA
1 GATG-AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
* * * * * *
735313 GACGAAGGTGCCAACATGTTGAGTCAAGGCCAGCGACATTGGACTTAAA
1 GATG-AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
*
735362 GATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATAATGGACTTAAA
1 GATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
* * *
735410 GTTGAGGTGCCAATATGCTGATTCAAAGCTAGCTATATTGGACTT-AA
1 GATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
* *
735457 GGTGAGGTGCCAAAATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
1 GATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
* *
735505 GGTGATAAAGGTGCCAATATGCTGACTCAAGGCCAGCTATATT
1 ---GAT-GAGGTGCCAATATGCTGATTCAAGGCCAGCTATATT
735548 CGTCCCCACA
Statistics
Matches: 207, Mismatches: 23, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
47 43 0.21
48 81 0.39
49 48 0.23
51 2 0.01
52 33 0.16
ACGTcount: A:0.32, C:0.17, G:0.26, T:0.25
Consensus pattern (48 bp):
GATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
Found at i:735481 original size:95 final size:96
Alignment explanation
Indices: 735264--735547 Score: 345
Period size: 95 Copynumber: 2.9 Consensus size: 96
735254 TTTTGAAAAT
* * * * ** *
735264 GATGAAGGCGCCAATATGTTGAGTCAAGGCCAGCGATATTGGACTTAAAGACGAAGGTGCCAACA
1 GATG-AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGTTG-AGGTGCCAATA
* * * *
735329 TGTTGAGTCAAGGCCAGCGACATTGGACTTAAA
64 TGCTGACTCAAGGCCAGCTATATTGGACTTAAA
*
735362 GATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATAATGGACTTAAAGTTGAGGTGCCAATATG
1 GATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGTTGAGGTGCCAATATG
* * *
735427 CTGATTCAAAGCTAGCTATATTGGACTT-AA
66 CTGACTCAAGGCCAGCTATATTGGACTTAAA
* * *
735457 GGTGAGGTGCCAAAATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGATAAAGGTGCCAA
1 GATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA-GT--T-GAGGTGCCAA
735522 TATGCTGACTCAAGGCCAGCTATATT
62 TATGCTGACTCAAGGCCAGCTATATT
735548 CGTCCCCACA
Statistics
Matches: 161, Mismatches: 21, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
95 47 0.29
96 36 0.22
97 41 0.25
98 5 0.03
99 32 0.20
ACGTcount: A:0.32, C:0.17, G:0.26, T:0.25
Consensus pattern (96 bp):
GATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGTTGAGGTGCCAATATG
CTGACTCAAGGCCAGCTATATTGGACTTAAA
Found at i:736252 original size:48 final size:48
Alignment explanation
Indices: 736127--736555 Score: 608
Period size: 48 Copynumber: 8.8 Consensus size: 48
736117 TTTTAAAAAT
* * * *
736127 GATGAAGGCGCCAATATGATGAGTCAAGGCCAGCGATATTGGACTTAAA
1 GATG-AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
* * * * * *
736176 GGTGAAGGTGCCAATGTGTTGAGTCAAGGCCAGCGACATTGGACTTAAA
1 GATG-AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
*
736225 GATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTTGACTTAAA
1 GATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
736273 -AGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
1 GA-TGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
*
736321 GGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
1 GATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
* * *
736369 GGTGTGGTGCCAATATGCTGATTCGAGGCCAGCTATATTGGACTTAAA
1 GATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
**
736417 TTTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
1 GATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
* *
736465 GGTGAGGTGCCAAAATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
1 GATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
*
736513 GGTGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATT
1 ---GAT-GAGGTGCCAATATGCTGATTCAAGGCCAGCTATATT
736556 CGTCCCCACA
Statistics
Matches: 348, Mismatches: 26, Indels: 9
0.91 0.07 0.02
Matches are distributed among these distances:
47 1 0.00
48 264 0.76
49 47 0.14
51 2 0.01
52 34 0.10
ACGTcount: A:0.30, C:0.17, G:0.27, T:0.27
Consensus pattern (48 bp):
GATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
Found at i:737260 original size:48 final size:48
Alignment explanation
Indices: 737135--737419 Score: 372
Period size: 48 Copynumber: 5.8 Consensus size: 48
737125 TTTTAAAAAT
* *
737135 GATGAAGGCGCCAATATGCTGAGTCAAGGCCAGCGATATTGGACTTAAA
1 GATG-AGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAA
* * * * *
737184 GACGAAGGTGCCAATGTGTTGAGTCAAGGCCAGCGACATTGGACTTAAA
1 GATG-AGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAA
*
737233 GATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
1 GATGAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAA
* * *
737281 GTTGAGGTGCCAATATGCTGATTCAAGGCTAGCTATATTGGACTTAAA
1 GATGAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAA
* * *
737329 GGTGAGGTGCCAAAATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
1 GATGAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAA
* *
737377 GATGATAAAGGTGCCAATATGCTGATTCAGGGCCAGCTATATT
1 GATG----AGGTGCCAATATGCTGATTCAAGGCCAGCGATATT
737420 CGTCCCCACA
Statistics
Matches: 213, Mismatches: 19, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
48 133 0.62
49 47 0.22
52 33 0.15
ACGTcount: A:0.31, C:0.17, G:0.27, T:0.25
Consensus pattern (48 bp):
GATGAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAA
Found at i:738414 original size:48 final size:48
Alignment explanation
Indices: 738244--738717 Score: 527
Period size: 48 Copynumber: 9.7 Consensus size: 48
738234 ATGAGAAGAA
* * * * **
738244 TGCCAATGTGCTGATTCAAGGCCAACGACATTGGGTTTTAAAAATGATGAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCTATATT-GGACTT--AAA-GATG-AGG
* * * * * *
738297 CGCCAATATGATGAGTCAAGGCTAGCGATATTGGACTTAAAGACGAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATG-AGG
* * * * *
738346 TGCCAATGTGTTGAGTCAAGGCCAGCGACATTGGACTTAAAGATGAGG
1 TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAGG
* *
738394 TGCCAATATGTTGATTCAAGGCCAGCTATATTTGACTTAAA-AGTGAGG
1 TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGA-TGAGG
*
738442 TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGG
1 TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAGG
* *
738490 TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGTGG
1 TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAGG
* *
738538 TGCCAATATGCTGATTCAAGGCCAACTATATTGGACTTAAAGGTGAGG
1 TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAGG
* * * * * *
738586 TACTAATATGCTGATTCAAGGCCATCTATATTAGACTTAAAGGTTAGG
1 TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAGG
* * *
738634 TGCCAATTTGCTGATTCAAGGCCAGCTATATTGGACTTAGAGGTGATAAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTA-A--AGAT-GAGG
* *
738686 AGCCAATATGCTGATTCAAGGCCAGCCATATT
1 TGCCAATATGCTGATTCAAGGCCAGCTATATT
738718 CGTCCCCACA
Statistics
Matches: 372, Mismatches: 43, Indels: 13
0.87 0.10 0.03
Matches are distributed among these distances:
47 1 0.00
48 258 0.69
49 47 0.13
50 3 0.01
51 2 0.01
52 36 0.10
53 25 0.07
ACGTcount: A:0.31, C:0.16, G:0.26, T:0.27
Consensus pattern (48 bp):
TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAGG
Found at i:739422 original size:48 final size:48
Alignment explanation
Indices: 739307--739725 Score: 545
Period size: 48 Copynumber: 8.6 Consensus size: 48
739297 GATGAAGGCA
* * * * *
739307 CCAATATGATGAGTCAAGGCTAGCGATATTGGACTTAAAGACGAAGGTG
1 CCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATG-AGGTG
* * * * *
739356 CCAATGTGTTGAGTCAAGGCCAGCGACATTGGACTTAAAGATGAGGTG
1 CCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAGGTG
* *
739404 CCAATATGTTGATTCAAGGCCAGCTATATTTGACTTAAA-AGTGAGGTG
1 CCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGA-TGAGGTG
*
739452 CCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTG
1 CCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAGGTG
* *
739500 CCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGTGGTG
1 CCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAGGTG
* *
739548 CCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTA
1 CCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAGGTG
* * *
739596 CTAATATGCTGATTCAAGGCCATCTATATTGGACTTAAAGGTGAGGTG
1 CCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAGGTG
* * *
739644 CCAATTTGCTGATTCAAGGCCAGCTATATTGGACTTAGAGGTGATAAAGGAT-
1 CCAATATGCTGATTCAAGGCCAGCTATATTGGACTTA-A--AGAT-GAGG-TG
*
739696 CCAATATGCTGATTCAAGGCCAGCCATATT
1 CCAATATGCTGATTCAAGGCCAGCTATATT
739726 CGTCCCCACA
Statistics
Matches: 336, Mismatches: 27, Indels: 11
0.90 0.07 0.03
Matches are distributed among these distances:
47 1 0.00
48 262 0.78
49 39 0.12
51 2 0.01
52 31 0.09
53 1 0.00
ACGTcount: A:0.30, C:0.16, G:0.26, T:0.27
Consensus pattern (48 bp):
CCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAGGTG
Found at i:739535 original size:144 final size:144
Alignment explanation
Indices: 739252--739725 Score: 572
Period size: 144 Copynumber: 3.2 Consensus size: 144
739242 ATGAGAAGAA
* * * * ** * *
739252 TGCCAATGTGCTGATTCAAGGCCAACGACATTGGGTTTTAAAAATGATGAAGGCACCAATATGAT
1 TGCCAATATGCTGATTCAAGGCCAGCTATATT-GGACTT-AAAA-G-TG-AGGTACCAATATGCT
* * * ** * * * *
739317 GAGTCAAGGCTAGCGATATTGGACTTAAAGACGAAGGTGCCAATGTGTTGAGTCAAGGCCAGCGA
61 GATTCAAGGCCAGCTATATTGGACTTAAAGGTG-AGGTGCCAATATGCTGATTCAAGGCCAGCTA
*
739382 CATTGGACTTAAAGATGAGG
125 TATTGGACTTAAAGATGAGG
* * *
739402 TGCCAATATGTTGATTCAAGGCCAGCTATATTTGACTTAAAAGTGAGGTGCCAATATGCTGATTC
1 TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAAGTGAGGTACCAATATGCTGATTC
739467 AAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGG
66 AAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGG
* *
739532 ACTTAAAGGTGTGG
131 ACTTAAAGATGAGG
* *
739546 TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTACTAATATGCTGATTC
1 TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAAGTGAGGTACCAATATGCTGATTC
* *
739611 AAGGCCATCTATATTGGACTTAAAGGTGAGGTGCCAATTTGCTGATTCAAGGCCAGCTATATTGG
66 AAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGG
* *
739676 ACTTAGAGGTGATAAAGG
131 ACTTA-A--AGAT-GAGG
*
739694 AT-CCAATATGCTGATTCAAGGCCAGCCATATT
1 -TGCCAATATGCTGATTCAAGGCCAGCTATATT
739726 CGTCCCCACA
Statistics
Matches: 284, Mismatches: 35, Indels: 12
0.86 0.11 0.04
Matches are distributed among these distances:
144 172 0.61
145 41 0.14
146 2 0.01
147 3 0.01
148 35 0.12
149 4 0.01
150 27 0.10
ACGTcount: A:0.31, C:0.16, G:0.26, T:0.27
Consensus pattern (144 bp):
TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAAGTGAGGTACCAATATGCTGATTC
AAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGG
ACTTAAAGATGAGG
Found at i:740385 original size:102 final size:97
Alignment explanation
Indices: 740260--740643 Score: 263
Period size: 96 Copynumber: 3.9 Consensus size: 97
740250 ATGAGAAGAA
* * **
740260 TGCCAATGTACTGATTCAAGGCCAACGGCATTGGGGTTTAAAAATGATGAAGGCGCCAATATGCT
1 TGCCAATGTACTGAGTCAAGGCCAACGACATT-GGACTT-AAAA--ATG-AGGCGCCAATATGCT
740325 GAGTCAAGGCC-AGCGATATTGGACTTAAAGACAAAGG
61 GAGTCAAGGCCAAG-GATATTGGACTTAAAGACAAAGG
** * * * *
740362 TGCCAATGTGTTGAGTCAAGGCCAGCGACATTGGACTTAAAAATGAGGTGCTAATATGCTGATTC
1 TGCCAATGTACTGAGTCAAGGCCAACGACATTGGACTTAAAAATGAGGCGCCAATATGCTGAGTC
* ***
740427 AAGGCCAAGTATATTGGACTTAAAG-GTGAGG
66 AAGGCCAAGGATATTGGACTTAAAGACAAAGG
* * * * * * ** * * *
740458 TGCCAATTTGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCTAATATGCTGATTC
1 TGCCAATGTACTGAGTCAAGGCCAACGACATTGGACTTAAAAATGAGGCGCCAATATGCTGAGTC
* ** ***
740523 AAGGCCTACTATATTGGACTTAAAG-GTGAGG
66 AAGGCCAAGGATATTGGACTTAAAGACAAAGG
* * * * * * * ** ** * *
740554 TGCCAATATGCTGATTCAAGGTCAGCTATATTGGACTTAAAGGTGAGGTACCAAAATGCTGATTC
1 TGCCAATGTACTGAGTCAAGGCCAACGACATTGGACTTAAAAATGAGGCGCCAATATGCTGAGTC
* *
740619 ATGGCC-AGCTATATTGGACTTAAAG
66 AAGGCCAAG-GATATTGGACTTAAAG
740644 GTGATAAAGG
Statistics
Matches: 250, Mismatches: 30, Indels: 10
0.86 0.10 0.03
Matches are distributed among these distances:
95 1 0.00
96 171 0.68
97 38 0.15
98 5 0.02
100 4 0.02
101 4 0.02
102 27 0.11
ACGTcount: A:0.31, C:0.16, G:0.26, T:0.27
Consensus pattern (97 bp):
TGCCAATGTACTGAGTCAAGGCCAACGACATTGGACTTAAAAATGAGGCGCCAATATGCTGAGTC
AAGGCCAAGGATATTGGACTTAAAGACAAAGG
Found at i:740432 original size:48 final size:48
Alignment explanation
Indices: 740314--740685 Score: 478
Period size: 48 Copynumber: 7.6 Consensus size: 48
740304 TGATGAAGGC
* * ***
740314 GCCAATATGCTGAGTCAAGGCCAGCGATATTGGACTTAAAGACAAAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAG-GTGAGGT
* * * * * **
740363 GCCAATGTGTTGAGTCAAGGCCAGCGACATTGGACTTAAAAATGAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGT
*
740411 GCTAATATGCTGATTCAAGGCCAAG-TATATTGGACTTAAAGGTGAGGT
1 GCCAATATGCTGATTCAAGGCC-AGCTATATTGGACTTAAAGGTGAGGT
*
740459 GCCAATTTGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGT
*
740507 GCTAATATGCTGATTCAAGGCCTA-CTATATTGGACTTAAAGGTGAGGT
1 GCCAATATGCTGATTCAAGGCC-AGCTATATTGGACTTAAAGGTGAGGT
*
740555 GCCAATATGCTGATTCAAGGTCAGCTATATTGGACTTAAAGGTGAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGT
* * *
740603 ACCAAAATGCTGATTCATGGCCAGCTATATTGGACTTAAAGGTGATAAAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTG----AGGT
* *
740655 GCCAACATGCTGATTCAAGGCTAGCTATATT
1 GCCAATATGCTGATTCAAGGCCAGCTATATT
740686 CGTCCCCACA
Statistics
Matches: 286, Mismatches: 29, Indels: 13
0.87 0.09 0.04
Matches are distributed among these distances:
47 3 0.01
48 212 0.74
49 40 0.14
52 31 0.11
ACGTcount: A:0.31, C:0.16, G:0.26, T:0.27
Consensus pattern (48 bp):
GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGT
Found at i:741266 original size:960 final size:960
Alignment explanation
Indices: 739349--741530 Score: 3733
Period size: 960 Copynumber: 2.3 Consensus size: 960
739339 ACTTAAAGAC
* * * * ** *
739349 GAAGGTGCCAATGTGTTGAGTCAAGGCCAGCGACATTGGACTTAAAGA-TGAGGTGCCAATATGT
1 GAAGGCGCCAATATGCTGAGTCAAGGCCAGCGATATTGGACTTAAAGACAAAGGTGCCAATGTGT
* * * * *
739413 TGATTCAAGGCCAGCTATATTTGACTTAAAAGTGAGGTGCCAATATGCTGATTCAAGGCC-AGCT
66 TGAGTCAAGGCCAGCGACATTGGACTTAAAAATGAGGTGCCAATATGCTGATTCAAGGCCAAG-T
*
739477 ATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGT
130 ATATTGGACTTAAAGGTGAGGTGCCAATTTGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGT
* * *
739542 GTGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTACTAATATGCTG
195 GAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTG
* * **
739607 ATTCAAGGCCATCTATATTGGACTTAAAGGTGAGGTGCCAATTTGCTGATTCAAGGCCAGCTATA
260 ATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTACCAAAATGCTGATTCAAGGCCAGCTATA
* *
739672 TTGGACTTAGAGGTGATAAAGGATCCAATATGCTGATTCAAGGCCAGCCATATTCGTCCCCACAT
325 TTGGACTTAAAGGTGATAAAGGATCCAACATGCTGATTCAAGGCCAGCCATATTCGTCCCCACAT
* * ** *
739737 ATGTTGAATCCTCCACCCACTAGCTAGGCCTTAAATTGTTGAAAATTGGCCCGGACAAAATGAGG
390 ATGTCGAATCCTCCACCCACTAGCTAGGCCCTAAATTGTTGAAAATTCACCCGGAAAAAATGAGG
* * *
739802 TGTCTACAGCTGCCCCTCTTTGGCCGTTTCTGAGTATCAGGAATAGGCTAAAGGCAAATAGACAC
455 TGTCTACAGCTGCCCCTCTTTGGCCGTTTCTGACTATCAGGAACAGGCCAAAGGCAAATAGACAC
739867 CATTTTGTCTGCGGCCGCATGTCATGACCTTTGGTGATTAATGCTTCGCCGTGATGAAGAGTGCA
520 CATTTTGTCTGCGGCCGCATGTCATGACCTTTGGTGATTAATGCTTCGCCGTGATGAAGAGTGCA
* *
739932 TTGGCGACGGTTCCGATGGAAAAATGAGTTTGTAGGGTTTGTCCTCCCTACTAGGTTTTGGAATT
585 TTGGCGACGGTTCCGATGGAAAAATGAGTTTGTAGGGTTTGTCCTCCCTACTAAGTTTTGAAATT
* * *
739997 TTCTAAGGCTTGACCTCCTTAGATAAGTGTAGATTGGTGTAGAGTTTGGAACGGATTTTGGAAGA
650 TTCTAAGGCTTGACCTCCTTAGATAAGTGTAGATTCGTGTAGAGTTCGAAACGGATTTTGGAAGA
* *
740062 ATATGGTCAGTATTTTGCAATGTGCCACTGTGCAGATTCAACGCCTGCCACACTGGAGTTAAAGA
715 ATATGGTCAGTATTTTCCAATGTGCCACTGTGCAGATTCAACGCCTGCCACACTGGACTTAAAGA
* *
740127 TGATGAGGATGAAGAGTGATAAAAAGACCAGTTCGTTGATTCACGGCCAACGATATTGGGTTTAA
780 TGATGAGGATGAAGAGTGATAAAAAGACCAGTACGTTGATTCACGACCAACGATATTGGGTTTAA
740192 AGATGAGAAAAAGGATGTCAATATGCTAATTCACGGTCAGCAACAGTCAGACTTGAAGATGAGAA
845 AGATGAGAAAAAGGATGTCAATATGCTAATTCACGGTCAGCAACAGTCAGACTTGAAGATGAGAA
*
740257 GAATGCCAATGTACTGATTCAAGGCCAACGGCATTGGGGTTTAAAAATGAT
910 GAATGCCAATGTACTGATTCAAGGCCAACGACATTGGGGTTTAAAAATGAT
740308 GAAGGCGCCAATATGCTGAGTCAAGGCCAGCGATATTGGACTTAAAGACAAAGGTGCCAATGTGT
1 GAAGGCGCCAATATGCTGAGTCAAGGCCAGCGATATTGGACTTAAAGACAAAGGTGCCAATGTGT
*
740373 TGAGTCAAGGCCAGCGACATTGGACTTAAAAATGAGGTGCTAATATGCTGATTCAAGGCCAAGTA
66 TGAGTCAAGGCCAGCGACATTGGACTTAAAAATGAGGTGCCAATATGCTGATTCAAGGCCAAGTA
740438 TATTGGACTTAAAGGTGAGGTGCCAATTTGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTG
131 TATTGGACTTAAAGGTGAGGTGCCAATTTGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTG
*
740503 AGGTGCTAATATGCTGATTCAAGGCCTA-CTATATTGGACTTAAAGGTGAGGTGCCAATATGCTG
196 AGGTGCCAATATGCTGATTCAAGGCC-AGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTG
* *
740567 ATTCAAGGTCAGCTATATTGGACTTAAAGGTGAGGTACCAAAATGCTGATTCATGGCCAGCTATA
260 ATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTACCAAAATGCTGATTCAAGGCCAGCTATA
* *
740632 TTGGACTTAAAGGTGATAAAGG-TGCCAACATGCTGATTCAAGGCTAGCTATATTCGTCCCCACA
325 TTGGACTTAAAGGTGATAAAGGAT-CCAACATGCTGATTCAAGGCCAGCCATATTCGTCCCCACA
* * * *
740696 TATGTCGAATCCTCCACCTACTAGCTAGGCCCTAAATTTTTGAAAATTCACCGGGAAAAAATGTG
389 TATGTCGAATCCTCCACCCACTAGCTAGGCCCTAAATTGTTGAAAATTCACCCGGAAAAAATGAG
740761 GTGTCTACAGCTGCCCCTCTTTGGCCGTTTCTGACTATCAGGAACAGGCCAAAGGCAAATAGACA
454 GTGTCTACAGCTGCCCCTCTTTGGCCGTTTCTGACTATCAGGAACAGGCCAAAGGCAAATAGACA
740826 CCATTTTGTCTGCGGCCGCATGTCATGACCTTTGGTGATTAATGCTTCGCCGTGATGAAGAGTGC
519 CCATTTTGTCTGCGGCCGCATGTCATGACCTTTGGTGATTAATGCTTCGCCGTGATGAAGAGTGC
740891 ATTGGCGACGGTTCCGATGGAAAAATGAGTTTGTAGGGTTTGTCCTCCCTACTAAGTTTTGAAAT
584 ATTGGCGACGGTTCCGATGGAAAAATGAGTTTGTAGGGTTTGTCCTCCCTACTAAGTTTTGAAAT
*
740956 TTTCTAAGGCTTGACCTCCTTAGATAGGTGTAGATTCGTGTAGAGTTCGAAACGGATTTTGGAAG
649 TTTCTAAGGCTTGACCTCCTTAGATAAGTGTAGATTCGTGTAGAGTTCGAAACGGATTTTGGAAG
741021 AATATGGTCAGTATTTTCCAATGTGCCACTGTGCAGATTCAACGCCTGCCACACTGGACTTAAAG
714 AATATGGTCAGTATTTTCCAATGTGCCACTGTGCAGATTCAACGCCTGCCACACTGGACTTAAAG
* *
741086 ATGATGAGGATGAAGGGTGATAAAAGGACCAGTACGTTGATTCACGACCAACGATATTGGGTTTA
779 ATGATGAGGATGAAGAGTGATAAAAAGACCAGTACGTTGATTCACGACCAACGATATTGGGTTTA
* * *
741151 AAGATGAGAAAAAGGATGTCAATATGCTGATTCACGGTCAGCAACAGTTAGATTTGAAGATGAGA
844 AAGATGAGAAAAAGGATGTCAATATGCTAATTCACGGTCAGCAACAGTCAGACTTGAAGATGAGA
* *
741216 AGAATGCCAATGTACTGATTCAAGGCCAACGACATTGGGTTTTGAAAATGAT
909 AGAATGCCAATGTACTGATTCAAGGCCAACGACATTGGGGTTTAAAAATGAT
* * *
741268 GAAGGCACCAATATGCTGAGTCAAGGCCAACGATATTGGACTTAAAGACGAAGGTGCCAATGTGT
1 GAAGGCGCCAATATGCTGAGTCAAGGCCAGCGATATTGGACTTAAAGACAAAGGTGCCAATGTGT
* *
741333 TGAGTCAAGGCCAGAGACATTGGACTTAAAAATGAGGTGCCAATATGCTGATTCAAGGCCAACTA
66 TGAGTCAAGGCCAGCGACATTGGACTTAAAAATGAGGTGCCAATATGCTGATTCAAGGCCAAGTA
741398 TATTGGACTTAAAGGTGAGGTGCCAATTTGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTG
131 TATTGGACTTAAAGGTGAGGTGCCAATTTGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTG
*
741463 AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAAAATGCTGA
196 AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGA
741528 TTC
261 TTC
741531 GTCCCCACAT
Statistics
Matches: 1152, Mismatches: 66, Indels: 9
0.94 0.05 0.01
Matches are distributed among these distances:
959 46 0.04
960 1103 0.96
961 3 0.00
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.27
Consensus pattern (960 bp):
GAAGGCGCCAATATGCTGAGTCAAGGCCAGCGATATTGGACTTAAAGACAAAGGTGCCAATGTGT
TGAGTCAAGGCCAGCGACATTGGACTTAAAAATGAGGTGCCAATATGCTGATTCAAGGCCAAGTA
TATTGGACTTAAAGGTGAGGTGCCAATTTGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTG
AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGA
TTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTACCAAAATGCTGATTCAAGGCCAGCTATAT
TGGACTTAAAGGTGATAAAGGATCCAACATGCTGATTCAAGGCCAGCCATATTCGTCCCCACATA
TGTCGAATCCTCCACCCACTAGCTAGGCCCTAAATTGTTGAAAATTCACCCGGAAAAAATGAGGT
GTCTACAGCTGCCCCTCTTTGGCCGTTTCTGACTATCAGGAACAGGCCAAAGGCAAATAGACACC
ATTTTGTCTGCGGCCGCATGTCATGACCTTTGGTGATTAATGCTTCGCCGTGATGAAGAGTGCAT
TGGCGACGGTTCCGATGGAAAAATGAGTTTGTAGGGTTTGTCCTCCCTACTAAGTTTTGAAATTT
TCTAAGGCTTGACCTCCTTAGATAAGTGTAGATTCGTGTAGAGTTCGAAACGGATTTTGGAAGAA
TATGGTCAGTATTTTCCAATGTGCCACTGTGCAGATTCAACGCCTGCCACACTGGACTTAAAGAT
GATGAGGATGAAGAGTGATAAAAAGACCAGTACGTTGATTCACGACCAACGATATTGGGTTTAAA
GATGAGAAAAAGGATGTCAATATGCTAATTCACGGTCAGCAACAGTCAGACTTGAAGATGAGAAG
AATGCCAATGTACTGATTCAAGGCCAACGACATTGGGGTTTAAAAATGAT
Found at i:741390 original size:48 final size:48
Alignment explanation
Indices: 741275--741530 Score: 336
Period size: 48 Copynumber: 5.3 Consensus size: 48
741265 GATGAAGGCA
* * **
741275 CCAATATGCTGAGTCAAGGCCA-ACGATATTGGACTTAAAGACGAAGGTG
1 CCAATATGCTGATTCAAGGCCAGA-TATATTGGACTTAAAGGTG-AGGTG
* * * * * **
741324 CCAATGTGTTGAGTCAAGGCCAGAGACATTGGACTTAAAAATGAGGTG
1 CCAATATGCTGATTCAAGGCCAGATATATTGGACTTAAAGGTGAGGTG
741372 CCAATATGCTGATTCAAGGCCA-ACTATATTGGACTTAAAGGTGAGGTG
1 CCAATATGCTGATTCAAGGCCAGA-TATATTGGACTTAAAGGTGAGGTG
* *
741420 CCAATTTGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTG
1 CCAATATGCTGATTCAAGGCCAGATATATTGGACTTAAAGGTGAGGTG
*
741468 CCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTG
1 CCAATATGCTGATTCAAGGCCAGATATATTGGACTTAAAGGTGAGGTG
*
741516 CCAAAATGCTGATTC
1 CCAATATGCTGATTC
741531 GTCCCCACAT
Statistics
Matches: 188, Mismatches: 16, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
47 1 0.01
48 150 0.80
49 36 0.19
50 1 0.01
ACGTcount: A:0.31, C:0.17, G:0.26, T:0.25
Consensus pattern (48 bp):
CCAATATGCTGATTCAAGGCCAGATATATTGGACTTAAAGGTGAGGTG
Found at i:742289 original size:43 final size:43
Alignment explanation
Indices: 742225--742553 Score: 325
Period size: 48 Copynumber: 7.1 Consensus size: 43
742215 TAAAGAATGA
742225 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
* * * *
742268 AAAGGTGCCAATGTGCCGATTCAAGGTCAGCTACATTGGACTTAAAT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGAC-T---T
* *
742315 ATGAAGGTGCCAATATGCTGATTTAAGGCCAGCGATATTGGACTT
1 A--AAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
742360 AAAGGCAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
1 --A---AAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
* *
742408 AAAAGCAAGGTGCCAATATGCTGATTCAAAGCCAGCTATATTGGGCTT
1 ---A--AAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
* *
742456 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
* * * *
742499 AAAGATGAAGGTTCCAATATGCTAATTCAAGGCCAGCGATATTGGGCTT
1 ----A--AAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
742548 AGAAGG
1 A-AAGG
742554 GTTGCCACTG
Statistics
Matches: 244, Mismatches: 26, Indels: 31
0.81 0.09 0.10
Matches are distributed among these distances:
43 75 0.31
44 6 0.02
45 3 0.01
47 4 0.02
48 83 0.34
49 73 0.30
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.26
Consensus pattern (43 bp):
AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
Found at i:742378 original size:26 final size:26
Alignment explanation
Indices: 742349--742426 Score: 60
Period size: 26 Copynumber: 3.2 Consensus size: 26
742339 AAGGCCAGCG
742349 ATATTGGACTTAAAGGCAAGGTGCCA
1 ATATTGGACTTAAAGGCAAGGTGCCA
* * *
742375 ATA-TGCTGA-TTCAAGGCCA---G-CT
1 ATATTG--GACTTAAAGGCAAGGTGCCA
*
742397 ATATTGGACTTAAAAGCAAGGTGCCA
1 ATATTGGACTTAAAGGCAAGGTGCCA
742423 ATAT
1 ATAT
742427 GCTGATTCAA
Statistics
Matches: 37, Mismatches: 7, Indels: 16
0.62 0.12 0.27
Matches are distributed among these distances:
21 2 0.05
22 11 0.30
23 3 0.08
25 3 0.08
26 16 0.43
27 2 0.05
ACGTcount: A:0.35, C:0.17, G:0.23, T:0.26
Consensus pattern (26 bp):
ATATTGGACTTAAAGGCAAGGTGCCA
Found at i:742509 original size:188 final size:193
Alignment explanation
Indices: 742181--742553 Score: 594
Period size: 188 Copynumber: 2.0 Consensus size: 193
742171 AAAAGGATGT
* *
742181 CAATGTGCTGATTCAAGGCCAGCTATGTTGAACTTAAAGAATGAAAAGGTGCCAATATGCTGATT
1 CAATATGCTGATTCAAGGCCAGCTATATTGAACTTAAAGAATGAAAAGGTGCCAATATGCTGATT
* *
742246 CAAGGCCAGCTATATTGGACTTAAAGGTGCCAATGTGCCGATTCAAGGTCAGCTACATTGGACTT
66 CAAAGCCAGCTATATTGGACTTAAAGGTGCCAATGTGCCGATTCAAGGCCAGCTACATTGGACTT
* * *
742311 AAATATGAAGGTGCCAATATGCTGATTTAAGGCCAGCGATATTGGACTTA-AAGGCAAGGTGC
131 AAAGATGAAGGTGCCAATATGCTAATTCAAGGCCAGCGATATTGGACTTAGAAGGCAAGGTGC
* *
742373 CAATATGCTGATTCAAGGCCAGCTATATTGGACTT-AA-AA-G-CAAGGTGCCAATATGCTGATT
1 CAATATGCTGATTCAAGGCCAGCTATATTGAACTTAAAGAATGAAAAGGTGCCAATATGCTGATT
* *
742434 CAAAGCCAGCTATATTGGGCTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT
66 CAAAGCCAGCTATATTGGACTTAAAGGTGCCAATGTGCCGATTCAAGGCCAGCTACATTGGACTT
* *
742499 AAAGATGAAGGTTCCAATATGCTAATTCAAGGCCAGCGATATTGGGCTTAGAAGG
131 AAAGATGAAGGTGCCAATATGCTAATTCAAGGCCAGCGATATTGGACTTAGAAGG
742554 GTTGCCACTG
Statistics
Matches: 167, Mismatches: 13, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
188 126 0.75
189 5 0.03
190 2 0.01
191 2 0.01
192 32 0.19
ACGTcount: A:0.32, C:0.18, G:0.25, T:0.26
Consensus pattern (193 bp):
CAATATGCTGATTCAAGGCCAGCTATATTGAACTTAAAGAATGAAAAGGTGCCAATATGCTGATT
CAAAGCCAGCTATATTGGACTTAAAGGTGCCAATGTGCCGATTCAAGGCCAGCTACATTGGACTT
AAAGATGAAGGTGCCAATATGCTAATTCAAGGCCAGCGATATTGGACTTAGAAGGCAAGGTGC
Found at i:742510 original size:140 final size:139
Alignment explanation
Indices: 742172--742553 Score: 452
Period size: 140 Copynumber: 2.7 Consensus size: 139
742162 AAGATGAGAA
* * *
742172 AAAGGATGTCAATGTGCTGATTCAAGGCCAGCTATGTTGAACTTAAAGAATGAAAAGGTGCCAAT
1 AAAGG-TGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACTTAAAG-ATG-AAAGGTGCCAAT
* * *
742237 ATGCTGATTCAAGGCCAGCTATATTGGACTT-AAAGGTGCCAATGTGCCGATTCAAGGTCAGCTA
63 ATGCTGATTCAAGGCCAGCTATATTGGACTTAAAAGGTGCCAATATGCCGATTCAAAGCCAGCTA
742301 CATTGGACTTAAAT
128 CATTGGACTT--AT
* * * *
742315 ATGAAGGTGCCAATATGCTGATTTAAGGCCAGCGATATTGGACTTAAAG--GCAAGGTGCCAATA
1 A--AAGGTGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAAGGTGCCAATA
*
742378 TGCTGATTCAAGGCCAGCTATATTGGACTTAAAAGCAAGGTGCCAATATGCTGATTCAAAGCCAG
64 TGCTGATTCAAGGCCAGCTATATTGGACTT--AA--AAGGTGCCAATATGCCGATTCAAAGCCAG
* *
742443 CTATATTGGGC-T-T
125 CTACATTGGACTTAT
* *
742456 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATG-AAGGTTCCAATATG
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAAGGTGCCAATATG
* * * *
742520 CTAATTCAAGGCCAGCGATATTGGGCTTAGAAGG
66 CTGATTCAAGGCCAGCTATATTGGACTTAAAAGG
742554 GTTGCCACTG
Statistics
Matches: 208, Mismatches: 22, Indels: 25
0.82 0.09 0.10
Matches are distributed among these distances:
136 4 0.02
138 1 0.00
139 42 0.20
140 80 0.38
141 4 0.02
143 2 0.01
144 37 0.18
145 38 0.18
ACGTcount: A:0.32, C:0.17, G:0.25, T:0.26
Consensus pattern (139 bp):
AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAAGGTGCCAATATG
CTGATTCAAGGCCAGCTATATTGGACTTAAAAGGTGCCAATATGCCGATTCAAAGCCAGCTACAT
TGGACTTAT
Found at i:742589 original size:32 final size:32
Alignment explanation
Indices: 742541--742677 Score: 192
Period size: 32 Copynumber: 4.3 Consensus size: 32
742531 CCAGCGATAT
*
742541 TGGGC-TTAGA-AGGGTTGCCACTGACTTGTG
1 TGGGCTTTAGAGAGGGTTGCCACCGACTTGTG
742571 TGGGCTTTAGAGAGGGTTGCCACCGACTTGTG
1 TGGGCTTTAGAGAGGGTTGCCACCGACTTGTG
* *
742603 TGGGCTTT-GAGAAGGGCTGCCACCGCCTTGTG
1 TGGGCTTTAGAG-AGGGTTGCCACCGACTTGTG
*
742635 TGGGCTTTAGAG-GGGATTGCCACCAACTTGTG
1 TGGGCTTTAGAGAGGG-TTGCCACCGACTTGTG
742667 TGGGCTTTAGA
1 TGGGCTTTAGA
742678 AGAAAAAGAG
Statistics
Matches: 96, Mismatches: 6, Indels: 8
0.87 0.05 0.07
Matches are distributed among these distances:
30 5 0.05
31 11 0.11
32 77 0.80
33 3 0.03
ACGTcount: A:0.16, C:0.19, G:0.36, T:0.28
Consensus pattern (32 bp):
TGGGCTTTAGAGAGGGTTGCCACCGACTTGTG
Found at i:742765 original size:29 final size:29
Alignment explanation
Indices: 742714--742946 Score: 249
Period size: 29 Copynumber: 8.0 Consensus size: 29
742704 GCTTACAAAA
* * *
742714 GAAAAAGAGTGCCA-TGGAGTTGTCGACTTT
1 GAAAAAGA-TGCCACT-GACTTGTGGGCTTT
* * *
742744 GGAAAAGATGCCACCGACTTGTGGGCTTC
1 GAAAAAGATGCCACTGACTTGTGGGCTTT
* *
742773 GAAAAAGGGTGCCACTGATTTGTGGGCTTT
1 GAAAAA-GATGCCACTGACTTGTGGGCTTT
* *
742803 G--AAGGTTGCCACTGACTTGTGGGCTTTT
1 GAAAAAGATGCCACTGACTTGTGGGC-TTT
*
742831 GAAAAAAAATGCCACTGACTTGTGGGCTTT
1 G-AAAAAGATGCCACTGACTTGTGGGCTTT
742861 GAAAAAGATGCCACTGACTTGTGGGCTTT
1 GAAAAAGATGCCACTGACTTGTGGGCTTT
* * *
742890 -TAAAGGTTGCCACTGACTTGTGGGCTTT
1 GAAAAAGATGCCACTGACTTGTGGGCTTT
* *
742918 GAAAAATATGCCACTGACTTGTGGACTTT
1 GAAAAAGATGCCACTGACTTGTGGGCTTT
742947 TGAAGGGTGA
Statistics
Matches: 170, Mismatches: 26, Indels: 15
0.81 0.12 0.07
Matches are distributed among these distances:
27 18 0.11
28 31 0.18
29 70 0.41
30 31 0.18
31 20 0.12
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.29
Consensus pattern (29 bp):
GAAAAAGATGCCACTGACTTGTGGGCTTT
Found at i:742900 original size:88 final size:86
Alignment explanation
Indices: 742740--742946 Score: 299
Period size: 88 Copynumber: 2.4 Consensus size: 86
742730 GAGTTGTCGA
* * * * * * *
742740 CTTTGGAAAAGATGCCACCGACTTGTGGGCTTCGAAAAAGGGTGCCACTGATTTGTGGGCTTTGA
1 CTTTGAAAAAAATGCCACTGACTTGTGGGCTTTGAAAAAGGATGCCACTGACTTGTGGGCTTTAA
742805 AGGTTGCCACTGACTTGTGGG
66 AGGTTGCCACTGACTTGTGGG
742826 CTTTTGAAAAAAAATGCCACTGACTTGTGGGCTTTGAAAAA-GATGCCACTGACTTGTGGGCTTT
1 C-TTTG-AAAAAAATGCCACTGACTTGTGGGCTTTGAAAAAGGATGCCACTGACTTGTGGGC-TT
742890 TAAAGGTTGCCACTGACTTGTGGG
63 TAAAGGTTGCCACTGACTTGTGGG
* *
742914 CTTTGAAAAATATGCCACTGACTTGTGGACTTT
1 CTTTGAAAAAAATGCCACTGACTTGTGGGCTTT
742947 TGAAGGGTGA
Statistics
Matches: 109, Mismatches: 9, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
86 27 0.25
87 26 0.24
88 56 0.51
ACGTcount: A:0.24, C:0.18, G:0.28, T:0.30
Consensus pattern (86 bp):
CTTTGAAAAAAATGCCACTGACTTGTGGGCTTTGAAAAAGGATGCCACTGACTTGTGGGCTTTAA
AGGTTGCCACTGACTTGTGGG
Found at i:742947 original size:57 final size:57
Alignment explanation
Indices: 742740--742952 Score: 241
Period size: 57 Copynumber: 3.7 Consensus size: 57
742730 GAGTTGTCGA
* * ** * *
742740 CTTTGGAAAAGATGCCACCGACTTGTGGGCTTCGAAAAAGGGTGCCACTGATTTGTGGG
1 CTTTGAAAAAGATGCCACTGACTTGTGGGCTT--TTAAAGGATGCCACTGACTTGTGGG
* * **
742799 CTTTG--AAGGTTGCCACTGACTTGTGGGCTTTTGAAAAAAAATGCCACTGACTTGTGGG
1 CTTTGAAAAAGATGCCACTGACTTGTGGGCTTTT---AAAGGATGCCACTGACTTGTGGG
*
742857 CTTTGAAAAAGATGCCACTGACTTGTGGGCTTTTAAAGGTTGCCACTGACTTGTGGG
1 CTTTGAAAAAGATGCCACTGACTTGTGGGCTTTTAAAGGATGCCACTGACTTGTGGG
* * *
742914 CTTTGAAAAATATGCCACTGACTTGTGGACTTTTGAAGG
1 CTTTGAAAAAGATGCCACTGACTTGTGGGCTTTTAAAGG
742953 GTGAGGAATG
Statistics
Matches: 132, Mismatches: 17, Indels: 12
0.82 0.11 0.07
Matches are distributed among these distances:
57 78 0.59
58 24 0.18
59 5 0.04
60 25 0.19
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.30
Consensus pattern (57 bp):
CTTTGAAAAAGATGCCACTGACTTGTGGGCTTTTAAAGGATGCCACTGACTTGTGGG
Found at i:744389 original size:1 final size:1
Alignment explanation
Indices: 744383--744495 Score: 118
Period size: 1 Copynumber: 113.0 Consensus size: 1
744373 CATCCGGACC
* * * * * * *
744383 TTTTTTTTGTTTTTTTTGTTTGTTTTTTTTTTGTTTTTTTTGTTTTTGTTTTTTTTTTGTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* * * * *
744448 TTTGTTTTGTTTTGTTTTTTTGTTTTTTTTGTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
744496 GTGGAGGACG
Statistics
Matches: 88, Mismatches: 24, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
1 88 1.00
ACGTcount: A:0.00, C:0.00, G:0.11, T:0.89
Consensus pattern (1 bp):
T
Found at i:744397 original size:9 final size:9
Alignment explanation
Indices: 744383--744497 Score: 150
Period size: 9 Copynumber: 13.1 Consensus size: 9
744373 CATCCGGACC
744383 TTTTTTTTG
1 TTTTTTTTG
744392 TTTTTTTTG
1 TTTTTTTTG
*
744401 --TTTGTT-
1 TTTTTTTTG
744407 TTTTTTTTG
1 TTTTTTTTG
744416 TTTTTTTTG
1 TTTTTTTTG
*
744425 TTTTTGTT-
1 TTTTTTTTG
744433 TTTTTTTTG
1 TTTTTTTTG
744442 TTTTTTTTTG
1 -TTTTTTTTG
744452 TTTTGTTTTG
1 TTTT-TTTTG
744462 -TTTTTTTG
1 TTTTTTTTG
744470 TTTTTTTTG
1 TTTTTTTTG
*
744479 TTTTTTTTT
1 TTTTTTTTG
744488 TTTTTTTTG
1 TTTTTTTTG
744497 T
1 T
744498 GGAGGACGCC
Statistics
Matches: 93, Mismatches: 6, Indels: 14
0.82 0.05 0.12
Matches are distributed among these distances:
7 5 0.05
8 17 0.18
9 57 0.61
10 14 0.15
ACGTcount: A:0.00, C:0.00, G:0.11, T:0.89
Consensus pattern (9 bp):
TTTTTTTTG
Found at i:744497 original size:27 final size:26
Alignment explanation
Indices: 744383--744494 Score: 167
Period size: 26 Copynumber: 4.3 Consensus size: 26
744373 CATCCGGACC
744383 TTTTTTTTGTTTTTTTTG--TTTGTT
1 TTTTTTTTGTTTTTTTTGTTTTTGTT
744407 TTTTTTTTGTTTTTTTTGTTTTTGTT
1 TTTTTTTTGTTTTTTTTGTTTTTGTT
744433 TTTTTTTTGTTTTTTTT-TGTTTTGTTT
1 TTTTTTTTGTTTTTTTTGT-TTTTG-TT
*
744460 TGTTTTTTTGTTTTTTTTGTTTTTTTT
1 T-TTTTTTTGTTTTTTTTGTTTTTGTT
744487 TTTTTTTT
1 TTTTTTTT
744495 TGTGGAGGAC
Statistics
Matches: 81, Mismatches: 1, Indels: 10
0.88 0.01 0.11
Matches are distributed among these distances:
24 18 0.22
25 1 0.01
26 35 0.43
27 6 0.07
28 20 0.25
29 1 0.01
ACGTcount: A:0.00, C:0.00, G:0.11, T:0.89
Consensus pattern (26 bp):
TTTTTTTTGTTTTTTTTGTTTTTGTT
Found at i:758396 original size:52 final size:52
Alignment explanation
Indices: 758318--758466 Score: 239
Period size: 52 Copynumber: 2.9 Consensus size: 52
758308 CGAAATATGA
758318 AAATTTGCCTGCATGTATCGATACATTAAATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTAAATAGTGTATCGATACATCTGGGC
** *
758370 AAATTTGCCTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTAAATAGTGTATCGATACATCTGGGC
758422 AAATTTGCCTGCATGTATCGATACA--AAGATCAGTGTATCGATACA
1 AAATTTGCCTGCATGTATCGATACATTAA-AT-AGTGTATCGATACA
758467 ATGTATCGAT
Statistics
Matches: 89, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
51 2 0.02
52 87 0.98
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Consensus pattern (52 bp):
AAATTTGCCTGCATGTATCGATACATTAAATAGTGTATCGATACATCTGGGC
Found at i:758473 original size:13 final size:13
Alignment explanation
Indices: 758455--758479 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
758445 CAAAGATCAG
758455 TGTATCGATACAA
1 TGTATCGATACAA
758468 TGTATCGATACA
1 TGTATCGATACA
758480 TTTAAGTGAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:759038 original size:48 final size:48
Alignment explanation
Indices: 758868--759297 Score: 484
Period size: 48 Copynumber: 8.7 Consensus size: 48
758858 ATGAGAAGAA
* * * * **
758868 TGCCAATGTGCTGATTCAAGGCCAACGACATTGGGTTTTAAAAATGATGAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCTATATT-GGACTT--AAA-GATG-AGG
* * * * *
758921 CGCCAATATGATGAGTCAAGGCCAGCGATATTGGACTTAAAGACGAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATG-AGG
* * * * *
758970 TGCCAATGTGTTGAGTCAAGGCCAGCGACATTGGACTTAAAGATGAGG
1 TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAGG
* *
759018 TGCCAATATGTTGATTCAAGGCCAGCTATATTTGACTTAAA-AGTGAGG
1 TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGA-TGAGG
*
759066 TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGG
1 TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAGG
*
759114 TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGG
1 TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAGG
* *
759162 TGCCAATATGCTGATTCAAGGCGAGCTATATTGGACTTAAAGGTGATAAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA---GAT-GAGG
** *
759214 AACCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGATAAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA---GAT-GAGG
*
759266 AGCCAATATGCTGATTCAAGGCCAGCTATATT
1 TGCCAATATGCTGATTCAAGGCCAGCTATATT
759298 CGTCCCCACA
Statistics
Matches: 342, Mismatches: 29, Indels: 13
0.89 0.08 0.03
Matches are distributed among these distances:
47 1 0.00
48 176 0.51
49 47 0.14
50 3 0.01
51 2 0.01
52 87 0.25
53 26 0.08
ACGTcount: A:0.32, C:0.16, G:0.26, T:0.26
Consensus pattern (48 bp):
TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAGG
Found at i:759241 original size:52 final size:49
Alignment explanation
Indices: 758915--759297 Score: 513
Period size: 48 Copynumber: 7.8 Consensus size: 49
758905 TTAAAAATGA
* * * * *
758915 TGAAGGCGCCAATATGATGAGTCAAGGCCAGCGATATTGGACTTAAAGA
1 TGAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGG
* * * * * * *
758964 CGAAGGTGCCAATGTGTTGAGTCAAGGCCAGCGACATTGGACTTAAAGA
1 TGAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGG
* * *
759013 TG-AGGTGCCAATATGTTGATTCAAGGCCAGCTATATTTGACTTAAAAG
1 TGAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGG
759061 TG-AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGG
1 TGAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGG
759109 TG-AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGG
1 TGAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGG
*
759157 TG-AGGTGCCAATATGCTGATTCAAGGCGAGCTATATTGGACTTAAAGG
1 TGAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGG
**
759205 TGATAAAGGAACCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGG
1 TG---AAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGG
*
759257 TGATAAAGGAGCCAATATGCTGATTCAAGGCCAGCTATATT
1 TG---AAGGTGCCAATATGCTGATTCAAGGCCAGCTATATT
759298 CGTCCCCACA
Statistics
Matches: 309, Mismatches: 21, Indels: 5
0.92 0.06 0.01
Matches are distributed among these distances:
48 181 0.59
49 45 0.15
52 83 0.27
ACGTcount: A:0.32, C:0.16, G:0.26, T:0.26
Consensus pattern (49 bp):
TGAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGG
Found at i:760004 original size:48 final size:48
Alignment explanation
Indices: 759886--760257 Score: 485
Period size: 48 Copynumber: 7.6 Consensus size: 48
759876 TGATGAAGGC
* * * ***
759886 GCCAATATGCTGAGTCAAGGCCAGCGATATTGGACATAAAGACAAAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAG-GTGAGGT
* * * * * **
759935 GCCAATGTGTTGAGTCAAGGCCAGCGACATTGGACTTAAAAATGAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGT
*
759983 GCTAATATGCTGATTCAAGGCCAAG-TATATTGGACTTAAAGGTGAGGT
1 GCCAATATGCTGATTCAAGGCC-AGCTATATTGGACTTAAAGGTGAGGT
*
760031 GCCAATTTGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGT
* * *
760079 GCGAATATGCTGATTCAAGGCCTGCTATATTGGACTTAAAAGTGAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGT
760127 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGT
* * * *
760175 ACCAAAATGCTGATTCAAGGCCAGCTATATTGGACTTAAATCTGATAAAGGT
1 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA---GGT-GAGGT
760227 GCCAATATGCTGATTCAAGGCCAGCTATATT
1 GCCAATATGCTGATTCAAGGCCAGCTATATT
760258 CGTCCCCACA
Statistics
Matches: 286, Mismatches: 31, Indels: 9
0.88 0.10 0.03
Matches are distributed among these distances:
47 2 0.01
48 211 0.74
49 38 0.13
51 2 0.01
52 33 0.12
ACGTcount: A:0.31, C:0.17, G:0.26, T:0.26
Consensus pattern (48 bp):
GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGT
Found at i:760658 original size:960 final size:958
Alignment explanation
Indices: 758551--761212 Score: 4549
Period size: 964 Copynumber: 2.8 Consensus size: 958
758541 TGTCTACAAC
*
758551 TCCGATGGAAAAATGAGTTTCTAGGGTTTGTCCTCCCTACTAGGTTTTGGAATTTTCTAAGGCTT
1 TCCGATGGAAAAATGAGTTTGTAGGGTTTGTCCTCCCTACTAGGTTTTGGAATTTTCTAAGGCTT
*
758616 GACCTCCTTAGATAGGTGTAGATTGGTGTAGAGTTTGGAACAGATTTTGGAAGAATATGGTCAGT
66 GACCTCCTTAGATAGGTGTAGATTGGTGTAGAGTTTGGAACGGATTTTGGAAGAATATGGTCAGT
* * *
758681 ATTTTGCAATGTGCCACTGTGCAGATTCAAGGCCTGCCACACTAGACTTAAAGATGATGAGGATG
131 ATTTTCCAATGTGCCACTGTGCAGATTCAACGCCTGCCACACTGGACTTAAAGATGATGAGGATG
*
758746 AAGAGTGATAAAAGGACCAGTACGTTGATTCATGACCAACGATATTGGGTTTAAAGATGAGAAAA
196 AAGAGTGATAAAAGGACCAGTACGTTGATTCACGACCAACGATATTGGGTTTAAAGATGAGAAAA
* * * *
758811 AGGATGTCAATATGCTAATTCACGGTCAGCGACAGTTAGACTTCAAGATGAGAAGAATGCCAATG
261 AGGATGTCAATATGCTGATTCACGGTCAGCAACAGTTAGATTTAAAGATGAGAAGAATGCCAATG
*
758876 TGCTGATTCAAGGCCAACGACATTGGGTTTTAAAAATGATGAAGGCGCCAATATGATGAGTCAAG
326 TACTGATTCAAGGCCAACGACATTGGGTTTTAAAAATGATGAAGGCGCCAATATGATGAGTCAAG
*
758941 GCCAGCGATATTGGACTTAAAGACGAAGGTGCCAATGTGTTGAGTCAAGGCCAGCGACATTGGAC
391 GCCAGCGATATTGGACTTAAAGACAAAGGTGCCAATGTGTTGAGTCAAGGCCAGCGACATTGGAC
* * *
759006 TTAAAGATGAGGTGCCAATATGTTGATTCAAGGCCAGCTATATTTGACTTAAAAGTGAGGTGCCA
456 TTAAAGATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCA
759071 ATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGC
521 ATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGC
*
759136 CAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCGAGCTATATTGGACTTA
586 CAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTA
* *
759201 AAGGTGATAAAGGAACCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGATAAAGG
651 AAGGTG----AGGTACCAAAATGCTGATTCAAGGCCAGCTATATTGGACTTAAA--TGATAAAGG
* *
759266 AGCCAATATGCTGATTCAAGGCCAGCTATATTCGTCCCCACATATGTTGAATCCTCCACCTACTA
710 TGCCAATATGCTGATTCAAGGCCAGCTATATTCGTCCCCACATATGTCGAATCCTCCACCTACTA
* * *
759331 GCTAGGCCTTAAATTGTTGAAAATTGGCCCGGACAAAATGAGGTGTCTACAGCTGCCCCTCTTTG
775 GCTAGGCCCTAAATTGTTGAAAATTGGCCCGAAAAAAATGAGGTGTCTACAGCTGCCCCTCTTTG
759396 GCCGTTTCTAAGTATCAGGAACAGGCCAAAGGCAAATAGACACCATTTTGTCTGCGGCCGCATGT
840 GCCGTTTCTAAGTATCAGGAACAGGCCAAAGGCAAATAGACACCATTTTGTCTGCGGCCGCATGT
759461 CATGACCTTTGGTGATTAATGCTTCGCCGTGATGAAGAGTGCATTGGCGACAGT
905 CATGACCTTTGGTGATTAATGCTTCGCCGTGATGAAGAGTGCATTGGCGACAGT
*
759515 TCCGATGGAAAAATAAGTTTGTAGGGTTTGTCCTCCCTACTAGGTTTTGGAATTTTCTAAGGCTT
1 TCCGATGGAAAAATGAGTTTGTAGGGTTTGTCCTCCCTACTAGGTTTTGGAATTTTCTAAGGCTT
759580 GACCTCCTTAGATAGGTGTAGATTGGTGTAGAGTTTGGAACGGATTTTGGAAGAATATGGTCAGT
66 GACCTCCTTAGATAGGTGTAGATTGGTGTAGAGTTTGGAACGGATTTTGGAAGAATATGGTCAGT
* * * *
759645 ATTTTCCAATGTGCCATTGTGTAGATTCAATGCCTGCCACACTGGAGTTAAAGATGATGAGGATG
131 ATTTTCCAATGTGCCACTGTGCAGATTCAACGCCTGCCACACTGGACTTAAAGATGATGAGGATG
* * *
759710 AAGAGTGATAAAAGGAGCAGTACGTTGATTCACGGCCAACGATATTTGGTTTAAAGATGAGAAAA
196 AAGAGTGATAAAAGGACCAGTACGTTGATTCACGACCAACGATATTGGGTTTAAAGATGAGAAAA
759775 AGGATGTCAATATGCTGATTCACGGTCAGCAACAGTTAGATTTAAAGATGAGAAGAATGCCAATG
261 AGGATGTCAATATGCTGATTCACGGTCAGCAACAGTTAGATTTAAAGATGAGAAGAATGCCAATG
* * *
759840 TACTGATTCAAGGCCAACGGCATTGGGTTTTACAAATGATGAAGGCGCCAATATGCTGAGTCAAG
326 TACTGATTCAAGGCCAACGACATTGGGTTTTAAAAATGATGAAGGCGCCAATATGATGAGTCAAG
*
759905 GCCAGCGATATTGGACATAAAGACAAAGGTGCCAATGTGTTGAGTCAAGGCCAGCGACATTGGAC
391 GCCAGCGATATTGGACTTAAAGACAAAGGTGCCAATGTGTTGAGTCAAGGCCAGCGACATTGGAC
* *
759970 TTAAAAATGAGGTGCTAATATGCTGATTCAAGGCCAAG-TATATTGGACTTAAAGGTGAGGTGCC
456 TTAAAGATGAGGTGCCAATATGCTGATTCAAGGCC-AGCTATATTGGACTTAAAGGTGAGGTGCC
* *
760034 AATTTGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCGAATATGCTGATTCAAGG
520 AATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGG
* *
760099 CCTGCTATATTGGACTTAAAAGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
585 CCAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
760164 AAAGGTGAGGTACCAAAATGCTGATTCAAGGCCAGCTATATTGGACTTAAATCTGATAAAGGTGC
650 AAAGGTGAGGTACCAAAATGCTGATTCAAGGCCAGCTATATTGGACTTAAA--TGATAAAGGTGC
760229 CAATATGCTGATTCAAGGCCAGCTATATTCGTCCCCACATATGTCGAATCCTCCACCTACTAGCT
713 CAATATGCTGATTCAAGGCCAGCTATATTCGTCCCCACATATGTCGAATCCTCCACCTACTAGCT
* *
760294 AGGCCCTAAATTTTTGAAAATTGGCCCGAAAAAAATGTGGTGTCTACAGCTGCCCCTCTTTGGCC
778 AGGCCCTAAATTGTTGAAAATTGGCCCGAAAAAAATGAGGTGTCTACAGCTGCCCCTCTTTGGCC
*
760359 GTTTCTGAGTATCAGGAACAGGCCAAAGGCAAATAGACACCATTTTGTCTGCGGCCGCATGTCAT
843 GTTTCTAAGTATCAGGAACAGGCCAAAGGCAAATAGACACCATTTTGTCTGCGGCCGCATGTCAT
*
760424 GACCTTTGGTGATTAATGCTTCGCCGTGATGAAGAGTGCATTGGCGACGGT
908 GACCTTTGGTGATTAATGCTTCGCCGTGATGAAGAGTGCATTGGCGACAGT
*
760475 TCCGATGGAAAAATGAGTTTGTAGGGTTTGTCCTCCCTACTAAGTTTTGGAATTTTCTAAGGCTT
1 TCCGATGGAAAAATGAGTTTGTAGGGTTTGTCCTCCCTACTAGGTTTTGGAATTTTCTAAGGCTT
*
760540 GACCTCCTTAGATAGGTGTAGATTGGTGTAGAGTTCGGAACGGATTTTGGAAGAATATGGTCAGT
66 GACCTCCTTAGATAGGTGTAGATTGGTGTAGAGTTTGGAACGGATTTTGGAAGAATATGGTCAGT
760605 ATTTTCCAATGTGCCACTGTGCAGATTCAACGCCTGCCACACTGGACTTAAAGATGATGAGGATG
131 ATTTTCCAATGTGCCACTGTGCAGATTCAACGCCTGCCACACTGGACTTAAAGATGATGAGGATG
*
760670 AAGGGTGATAAAAGGACCAGTACGTTGATTCACGACCAACGATATTGGGTTTAAAGATGAGAAAA
196 AAGAGTGATAAAAGGACCAGTACGTTGATTCACGACCAACGATATTGGGTTTAAAGATGAGAAAA
* * *
760735 ATGATGTCAATATGTTGATTCACGGTCAGCAACAGTTAGATTTGAAGATGAGAAGAATG-CAATG
261 AGGATGTCAATATGCTGATTCACGGTCAGCAACAGTTAGATTTAAAGATGAGAAGAATGCCAATG
* * * *
760799 TACTGATTCAAGGCCAACGACATTGGGTTTTAGAAATGATGAAGGTGCCAATGTGTTGAGTCAAG
326 TACTGATTCAAGGCCAACGACATTGGGTTTTAAAAATGATGAAGGCGCCAATATGATGAGTCAAG
* ** * * * * * * *
760864 GCCAGCGACATTGGACTTAAAGA-TGAGGTGCCAATATGCTGATTCAAGGCCAACTATATTAGAC
391 GCCAGCGATATTGGACTTAAAGACAAAGGTGCCAATGTGTTGAGTCAAGGCCAGCGACATTGGAC
* *
760928 TTAAAGGTGAGGTGCCAATATGCTGTTTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCA
456 TTAAAGATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCA
760993 ATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGC
521 ATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGC
*
761058 CAGCTATATTGGACTTAAAGGTGAGGTGCCAATTTGCTGATTCAAGGCCAGCTATATTGGACTTA
586 CAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTA
* * *
761123 AAGGTGAGGTGCCAAAATGCTGATTCAAGGCCAGCTACATTGGACTTAAA-GATGAAGGTGCCAA
651 AAGGTGAGGTACCAAAATGCTGATTCAAGGCCAGCTATATTGGACTTAAATGATAAAGGTGCCAA
* * *
761187 TATGCTGATTCAGGGCTAGCGATATT
716 TATGCTGATTCAAGGCCAGCTATATT
761213 GGACTTAAAG
Statistics
Matches: 1605, Mismatches: 91, Indels: 13
0.94 0.05 0.01
Matches are distributed among these distances:
955 36 0.02
957 2 0.00
958 263 0.16
959 86 0.05
960 596 0.37
964 620 0.39
965 2 0.00
ACGTcount: A:0.30, C:0.17, G:0.26, T:0.27
Consensus pattern (958 bp):
TCCGATGGAAAAATGAGTTTGTAGGGTTTGTCCTCCCTACTAGGTTTTGGAATTTTCTAAGGCTT
GACCTCCTTAGATAGGTGTAGATTGGTGTAGAGTTTGGAACGGATTTTGGAAGAATATGGTCAGT
ATTTTCCAATGTGCCACTGTGCAGATTCAACGCCTGCCACACTGGACTTAAAGATGATGAGGATG
AAGAGTGATAAAAGGACCAGTACGTTGATTCACGACCAACGATATTGGGTTTAAAGATGAGAAAA
AGGATGTCAATATGCTGATTCACGGTCAGCAACAGTTAGATTTAAAGATGAGAAGAATGCCAATG
TACTGATTCAAGGCCAACGACATTGGGTTTTAAAAATGATGAAGGCGCCAATATGATGAGTCAAG
GCCAGCGATATTGGACTTAAAGACAAAGGTGCCAATGTGTTGAGTCAAGGCCAGCGACATTGGAC
TTAAAGATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCA
ATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGC
CAGCTATATTGGACTTAAAGGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTA
AAGGTGAGGTACCAAAATGCTGATTCAAGGCCAGCTATATTGGACTTAAATGATAAAGGTGCCAA
TATGCTGATTCAAGGCCAGCTATATTCGTCCCCACATATGTCGAATCCTCCACCTACTAGCTAGG
CCCTAAATTGTTGAAAATTGGCCCGAAAAAAATGAGGTGTCTACAGCTGCCCCTCTTTGGCCGTT
TCTAAGTATCAGGAACAGGCCAAAGGCAAATAGACACCATTTTGTCTGCGGCCGCATGTCATGAC
CTTTGGTGATTAATGCTTCGCCGTGATGAAGAGTGCATTGGCGACAGT
Found at i:761214 original size:49 final size:48
Alignment explanation
Indices: 760836--761507 Score: 975
Period size: 48 Copynumber: 13.8 Consensus size: 48
760826 TTTTAGAAAT
* * * * *
760836 GATGAAGGTGCCAATGTGTTGAGTCAAGGCCAGCGACATTGGACTTAAA
1 GATG-AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
* *
760885 GATGAGGTGCCAATATGCTGATTCAAGGCCAACTATATTAGACTTAAA
1 GATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
* *
760933 GGTGAGGTGCCAATATGCTGTTTCAAGGCCAGCTATATTGGACTTAAA
1 GATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
*
760981 GGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
1 GATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
*
761029 GGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
1 GATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
* *
761077 GGTGAGGTGCCAATTTGCTGATTCAAGGCCAGCTATATTGGACTTAAA
1 GATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
* * *
761125 GGTGAGGTGCCAAAATGCTGATTCAAGGCCAGCTACATTGGACTTAAA
1 GATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
* * *
761173 GATGAAGGTGCCAATATGCTGATTCAGGGCTAGCGATATTGGACTTAAA
1 GATG-AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
* * *
761222 GGTGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAA
1 GATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
* *
761270 GATGAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAA
1 GATG-AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
* * *
761319 GATGAAGGTGCCAATGTGCTGATTCAAGGCCGGCTACATTGGACTTAAA
1 GATG-AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
*
761368 GATGAAGGTGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACTTAAA
1 GATG-AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
*
761417 GGTGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
1 GATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
* * *
761465 GGTGATAAAGGTGCCAATATGCTAATTCAAGGCTAGCTATATT
1 ---GAT-GAGGTGCCAATATGCTGATTCAAGGCCAGCTATATT
761508 CGTCCCCACA
Statistics
Matches: 579, Mismatches: 38, Indels: 9
0.92 0.06 0.01
Matches are distributed among these distances:
48 356 0.61
49 188 0.32
51 2 0.00
52 33 0.06
ACGTcount: A:0.30, C:0.17, G:0.27, T:0.26
Consensus pattern (48 bp):
GATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
Found at i:761684 original size:15 final size:16
Alignment explanation
Indices: 761653--761685 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
761643 AGAAGATAAT
761653 AAATTGAAAATTCTTG
1 AAATTGAAAATTCTTG
761669 AAATTGAAAA-TCTTG
1 AAATTGAAAATTCTTG
761684 AA
1 AA
761686 CAAAAGATTG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.41
16 10 0.59
ACGTcount: A:0.48, C:0.06, G:0.12, T:0.33
Consensus pattern (16 bp):
AAATTGAAAATTCTTG
Found at i:765546 original size:8 final size:8
Alignment explanation
Indices: 765533--765564 Score: 55
Period size: 8 Copynumber: 3.9 Consensus size: 8
765523 ATTTGATTAA
765533 ATTTTGTG
1 ATTTTGTG
765541 ATTTTGTG
1 ATTTTGTG
765549 ATTTTGTG
1 ATTTTGTG
765557 ATGTTTGT
1 AT-TTTGT
765565 TGTTGAAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 18 0.78
9 5 0.22
ACGTcount: A:0.12, C:0.00, G:0.25, T:0.62
Consensus pattern (8 bp):
ATTTTGTG
Found at i:768380 original size:32 final size:33
Alignment explanation
Indices: 768339--768406 Score: 102
Period size: 33 Copynumber: 2.1 Consensus size: 33
768329 CCTTAACTGT
* *
768339 TTGTATCGATACA-CACAATATGTATCGATATA
1 TTGTATCGATACATCACAAAATGTATCGATACA
*
768371 TTGTATCGATACATCCCAAAATGTATCGATACA
1 TTGTATCGATACATCACAAAATGTATCGATACA
768404 TTG
1 TTG
768407 GCTTGTAACG
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
32 13 0.41
33 19 0.59
ACGTcount: A:0.35, C:0.18, G:0.13, T:0.34
Consensus pattern (33 bp):
TTGTATCGATACATCACAAAATGTATCGATACA
Found at i:771741 original size:20 final size:20
Alignment explanation
Indices: 771716--771780 Score: 72
Period size: 20 Copynumber: 3.6 Consensus size: 20
771706 AAAACCCAGA
771716 TGTATCGATACAACATTCCT
1 TGTATCGATACAACATTCCT
771736 TGTATCGAT---ACA----T
1 TGTATCGATACAACATTCCT
*
771749 AGTATCGATACAACATTCCT
1 TGTATCGATACAACATTCCT
771769 TGTATCGATACA
1 TGTATCGATACA
771781 TTGGGTACTA
Statistics
Matches: 36, Mismatches: 2, Indels: 14
0.69 0.04 0.27
Matches are distributed among these distances:
13 9 0.25
16 3 0.08
17 3 0.08
20 21 0.58
ACGTcount: A:0.32, C:0.22, G:0.12, T:0.34
Consensus pattern (20 bp):
TGTATCGATACAACATTCCT
Found at i:771759 original size:33 final size:33
Alignment explanation
Indices: 771717--771781 Score: 130
Period size: 33 Copynumber: 2.0 Consensus size: 33
771707 AAACCCAGAT
771717 GTATCGATACAACATTCCTTGTATCGATACATA
1 GTATCGATACAACATTCCTTGTATCGATACATA
771750 GTATCGATACAACATTCCTTGTATCGATACAT
1 GTATCGATACAACATTCCTTGTATCGATACAT
771782 TGGGTACTAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.32, C:0.22, G:0.12, T:0.34
Consensus pattern (33 bp):
GTATCGATACAACATTCCTTGTATCGATACATA
Found at i:773659 original size:22 final size:20
Alignment explanation
Indices: 773637--773705 Score: 65
Period size: 21 Copynumber: 3.5 Consensus size: 20
773627 ATTGACAAAG
773637 GGGGAGAAATGCTTTGATTAA
1 GGGGAGAAATGCTTT-ATTAA
* *
773658 GGGGAAAAATG-TTT-TTTA
1 GGGGAGAAATGCTTTATTAA
773676 --GGAGAAATGCTTTAATTAA
1 GGGGAGAAATGCTTT-ATTAA
773695 GGGGGAGAAAT
1 -GGGGAGAAAT
773706 TATTTTGAAA
Statistics
Matches: 38, Mismatches: 4, Indels: 11
0.72 0.08 0.21
Matches are distributed among these distances:
16 8 0.21
17 3 0.08
18 3 0.08
19 3 0.08
20 3 0.08
21 10 0.26
22 8 0.21
ACGTcount: A:0.36, C:0.03, G:0.32, T:0.29
Consensus pattern (20 bp):
GGGGAGAAATGCTTTATTAA
Found at i:774284 original size:13 final size:13
Alignment explanation
Indices: 774266--774292 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
774256 TATCGATACA
774266 CACCCAGATGTAT
1 CACCCAGATGTAT
774279 CACCCAGATGTAT
1 CACCCAGATGTAT
774292 C
1 C
774293 GATACATATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.33, G:0.15, T:0.22
Consensus pattern (13 bp):
CACCCAGATGTAT
Found at i:774398 original size:33 final size:34
Alignment explanation
Indices: 774361--774430 Score: 90
Period size: 33 Copynumber: 2.1 Consensus size: 34
774351 CTATCACTAT
* *
774361 TTGTATTGATACATGGT-ATAA-TGTATCAATACA
1 TTGTATCGATACATGATGA-AATTGTATCAATACA
*
774394 TTGTATCGATACATGATGAAATTGTATCGATACA
1 TTGTATCGATACATGATGAAATTGTATCAATACA
774428 TTG
1 TTG
774431 CTTGTAACGA
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
33 17 0.53
34 15 0.47
ACGTcount: A:0.34, C:0.10, G:0.17, T:0.39
Consensus pattern (34 bp):
TTGTATCGATACATGATGAAATTGTATCAATACA
Found at i:774845 original size:20 final size:20
Alignment explanation
Indices: 774820--774859 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
774810 GTCTAGTTAA
774820 GGTTGTGTTCAACCGAAGAG
1 GGTTGTGTTCAACCGAAGAG
774840 GGTTGTGTTCAACCGAAGAG
1 GGTTGTGTTCAACCGAAGAG
774860 TGTTAATCTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.25, C:0.15, G:0.35, T:0.25
Consensus pattern (20 bp):
GGTTGTGTTCAACCGAAGAG
Found at i:788802 original size:49 final size:47
Alignment explanation
Indices: 788736--789332 Score: 703
Period size: 43 Copynumber: 12.9 Consensus size: 47
788726 GATGGAAAAG
* * *
788736 GTGCCAATATGCTGATTCAAGGCCAGCGATATCGGACTTAAAGCTGAA
1 GTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATG-A
* * *
788784 GATGCCAATGTGCTGATTCAAGGCCAGCTACATTAGACTTAAAGATGA
1 G-TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGA
* *
788832 GGTGCCAATATGCTAATTCAAGGCTAGCTATATTGGACTT-AA-A-G-
1 -GTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGA
* * *
788876 GTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAA
1 GTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGAT--GA
* *
788925 GTGCCAATATGCTGAATCAAGGCCAGCTATATTGGACTTAAAGGTGA
1 GTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGA
788972 GGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGA
1 -GTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGA
789020 GGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT-AA-A-G-
1 -GTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGA
* *
789064 GTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT-AA-A-G-
1 GTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGA
* * * *
789107 CTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGTTGAAA
1 GTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATG--A
*
789156 GTGCCAATATGCTGATTCAAGGCCAGCTAAATTGGACTT-AA-A-G-
1 GTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGA
* * * *
789199 GTGCCAATCTGCTGATTCAAGGCCAACTACATTGGACTTAAAGATAAA
1 GTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGAT-GA
789247 GGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT-AA-A-G-
1 -GTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGA
* * * *
789291 GCGCCAATGTGCTAATTCAAGGCCAGCTACATTGGACTTAAA
1 GTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
789333 AGAAGATGCC
Statistics
Matches: 484, Mismatches: 43, Indels: 48
0.84 0.07 0.08
Matches are distributed among these distances:
43 185 0.38
44 8 0.02
45 4 0.01
46 4 0.01
47 6 0.01
48 124 0.26
49 153 0.32
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (47 bp):
GTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGA
Found at i:789197 original size:92 final size:92
Alignment explanation
Indices: 788922--789332 Score: 536
Period size: 92 Copynumber: 4.5 Consensus size: 92
788912 CTTAAAGATA
* * * * *
788922 AAAG-TGCCAATATGCTGAATCAAGGCCAGCTATATTGGACTTAAAGGT-GAGGTGCCAATATGC
1 AAAGCTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGC
*
788985 TGATTCAAGGCCAGCTATATTGGACTT
66 TGATTCAAGGCCAGCTAAATTGGACTT
* * *
789012 AAAGATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGAC-T-----TAAAGGTGCCAA
1 --A-A--AGCTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAA
* *
789071 TGTGCTGATTCAAGGCCAGCTACATTGGACTT
61 TATGCTGATTCAAGGCCAGCTAAATTGGACTT
*
789103 AAAGCTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGTTGAAA-GTGCCAATATG
1 AAAGCTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT-AAAGGTGCCAATATG
789167 CTGATTCAAGGCCAGCTAAATTGGACTT
65 CTGATTCAAGGCCAGCTAAATTGGACTT
* * *
789195 AAAGGTGCCAATCTGCTGATTCAAGGCCAACTACATTGGACTTAAAGATAAAGGTGCCAATATGC
1 AAAGCTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGC
*
789260 TGATTCAAGGCCAGCTATATTGGACTT
66 TGATTCAAGGCCAGCTAAATTGGACTT
*
789287 AAAGGC-GCCAATGTGCTAATTCAAGGCCAGCTACATTGGACTTAAA
1 AAA-GCTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAA
789333 AGAAGATGCC
Statistics
Matches: 287, Mismatches: 18, Indels: 28
0.86 0.05 0.08
Matches are distributed among these distances:
86 36 0.13
87 1 0.00
88 1 0.00
89 1 0.00
90 1 0.00
91 42 0.15
92 162 0.56
93 5 0.02
95 3 0.01
96 35 0.12
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (92 bp):
AAAGCTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGC
TGATTCAAGGCCAGCTAAATTGGACTT
Found at i:789422 original size:34 final size:34
Alignment explanation
Indices: 789364--789562 Score: 216
Period size: 34 Copynumber: 6.0 Consensus size: 34
789354 TGGGCTTTTG
* *
789364 AAAAGGAGAAAGA-TGCCACGGAGTTGTGGACTT
1 AAAAGGAAAAAGAGTGCCACAGAGTTGTGGACTT
*
789397 AAAAAGGAAAAA-AGTGCGACAGAGTTGTGGACTT
1 -AAAAGGAAAAAGAGTGCCACAGAGTTGTGGACTT
* *
789431 AGAAGGAAAAAGAGTGCCAC-GAAGTTGTGGGCTT
1 AAAAGGAAAAAGAGTGCCACAG-AGTTGTGGACTT
* *
789465 -AAATGAAAAAG-GTGCCACGGAGTTGTGGACTT
1 AAAAGGAAAAAGAGTGCCACAGAGTTGTGGACTT
* *
789497 AGAAGGAAAAAGAGTGCCACAGAGTTGTGGGCTT
1 AAAAGGAAAAAGAGTGCCACAGAGTTGTGGACTT
* *
789531 AAAA-GAAAATGA-TGCCACTA-AGTCGTGGACTT
1 AAAAGGAAAAAGAGTGCCAC-AGAGTTGTGGACTT
789563 TGAAGAAAAT
Statistics
Matches: 141, Mismatches: 17, Indels: 16
0.81 0.10 0.09
Matches are distributed among these distances:
32 34 0.24
33 39 0.28
34 68 0.48
ACGTcount: A:0.38, C:0.12, G:0.31, T:0.19
Consensus pattern (34 bp):
AAAAGGAAAAAGAGTGCCACAGAGTTGTGGACTT
Found at i:789497 original size:100 final size:98
Alignment explanation
Indices: 789372--789594 Score: 270
Period size: 100 Copynumber: 2.3 Consensus size: 98
789362 TGAAAAGGAG
* *
789372 AAAGATGCCACGGAGTTGTGGACTTAAAAAGGAAAAA-AGTGCGACAGAGTTGTGGACTTAGAAG
1 AAAGATGCCACGGAGTTGTGGACTT-AAAAGGAAAAAGAGTGCCACAGAGTTGTGGACTTA-AAA
*
789436 GAAAAAGAGTGCCACGAAGTTGTGGGCTTAAATGAA
64 GAAAAAGA-TGCCACGAAGTCGTGGGCTTAAATGAA
* * *
789472 AAAGGTGCCACGGAGTTGTGGACTTAGAAGGAAAAAGAGTGCCACAGAGTTGTGGGCTTAAAAGA
1 AAAGATGCCACGGAGTTGTGGACTTAAAAGGAAAAAGAGTGCCACAGAGTTGTGGACTTAAAAGA
* * * *
789537 AAATGATGCCACTAAGTCGTGGACTTTGAA-GAA
66 AAAAGATGCCACGAAGTCGTGGGC-TTAAATGAA
* * **
789570 AATGATGCCACTGAGTCATGGACTT
1 AAAGATGCCACGGAGTTGTGGACTT
789595 TGAAAAGAGA
Statistics
Matches: 106, Mismatches: 15, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
98 38 0.36
99 23 0.22
100 45 0.42
ACGTcount: A:0.36, C:0.13, G:0.30, T:0.21
Consensus pattern (98 bp):
AAAGATGCCACGGAGTTGTGGACTTAAAAGGAAAAAGAGTGCCACAGAGTTGTGGACTTAAAAGA
AAAAGATGCCACGAAGTCGTGGGCTTAAATGAA
Found at i:789498 original size:66 final size:65
Alignment explanation
Indices: 789366--789580 Score: 247
Period size: 66 Copynumber: 3.3 Consensus size: 65
789356 GGCTTTTGAA
* * * * *
789366 AAGGAGAAAGATGCCACGGAGTTGTGGACTTAAAAAGGAAAAAAGTGCGACAGAGTTGTGGACTT
1 AAGGAAAAAGATGCCACGAAGTTGTGGGCTT-AAAA-GAAAAAGGTGCCACAGAGTTGTGGACTT
789431 AG
64 AG
* *
789433 AAGGAAAAAGAGTGCCACGAAGTTGTGGGCTTAAATGAAAAAGGTGCCACGGAGTTGTGGACTTA
1 AAGGAAAAAGA-TGCCACGAAGTTGTGGGCTTAAAAGAAAAAGGTGCCACAGAGTTGTGGACTTA
789498 G
65 G
* * *
789499 AAGGAAAAAGAGTGCCAC-AGAGTTGTGGGCTTAAAAGAAAATGATGCCACTA-AGTCGTGGACT
1 AAGGAAAAAGA-TGCCACGA-AGTTGTGGGCTTAAAAGAAAAAGGTGCCAC-AGAGTTGTGGACT
*
789562 TTG
63 TAG
*
789565 AA-GAAAATGATGCCAC
1 AAGGAAAAAGATGCCAC
789581 TGAGTCATGG
Statistics
Matches: 131, Mismatches: 14, Indels: 9
0.85 0.09 0.06
Matches are distributed among these distances:
64 6 0.05
65 8 0.06
66 86 0.66
67 13 0.10
68 18 0.14
ACGTcount: A:0.38, C:0.13, G:0.31, T:0.19
Consensus pattern (65 bp):
AAGGAAAAAGATGCCACGAAGTTGTGGGCTTAAAAGAAAAAGGTGCCACAGAGTTGTGGACTTAG
Found at i:789613 original size:31 final size:30
Alignment explanation
Indices: 789541--789747 Score: 172
Period size: 30 Copynumber: 6.8 Consensus size: 30
789531 AAAAGAAAAT
* *
789541 GATGCCACTAAGTCGTGGACTTTGAAGAAAA
1 GATGCCACTGAGTCGTGGACTTTGAA-AAGA
*
789572 TGATGCCACTGAGTCATGGACTTTGAAAAGA
1 -GATGCCACTGAGTCGTGGACTTTGAAAAGA
* *
789603 GATTGCCACTGAGTTGTGGACTTTGGGACAA-A
1 GA-TGCCACTGAGTCGTGGACTTT--GAAAAGA
* * *
789635 -ATGCCACTGAGTTGTGGGCTTTGAGAAGA
1 GATGCCACTGAGTCGTGGACTTTGAAAAGA
* * *
789664 AATTGCCACTGAGTCGTGGATTTTAGGACAA-A
1 GA-TGCCACTGAGTCGTGGACTTT--GAAAAGA
* *
789696 -ATGCCACTGAGTCGTGG-TTTTGAGAAGA
1 GATGCCACTGAGTCGTGGACTTTGAAAAGA
*
789724 GATTGCCACTAAGTCGTGGACTTT
1 GA-TGCCACTGAGTCGTGGACTTT
789748 AAGAAGGTAT
Statistics
Matches: 148, Mismatches: 15, Indels: 25
0.79 0.08 0.13
Matches are distributed among these distances:
27 4 0.03
28 5 0.03
29 6 0.04
30 54 0.36
31 45 0.30
32 26 0.18
33 8 0.05
ACGTcount: A:0.28, C:0.16, G:0.29, T:0.28
Consensus pattern (30 bp):
GATGCCACTGAGTCGTGGACTTTGAAAAGA
Found at i:789646 original size:61 final size:60
Alignment explanation
Indices: 789543--789747 Score: 259
Period size: 61 Copynumber: 3.4 Consensus size: 60
789533 AAGAAAATGA
* * *
789543 TGCCACTAAGTCGTGGACTTTGAAGA-AAATGATGCCACTGAGTCATGGACTTTGAAAAGAGAT
1 TGCCACTAAGTCGTGGACTTTG-GGACAAA--ATGCCACTGAGTCGTGG-CTTTGAGAAGAGAT
* * * *
789606 TGCCACTGAGTTGTGGACTTTGGGACAAAATGCCACTGAGTTGTGGGCTTTGAGAAGAAAT
1 TGCCACTAAGTCGTGGACTTTGGGACAAAATGCCACTGAGTCGT-GGCTTTGAGAAGAGAT
* * * *
789667 TGCCACTGAGTCGTGGATTTTAGGACAAAATGCCACTGAGTCGTGGTTTTGAGAAGAGAT
1 TGCCACTAAGTCGTGGACTTTGGGACAAAATGCCACTGAGTCGTGGCTTTGAGAAGAGAT
789727 TGCCACTAAGTCGTGGACTTT
1 TGCCACTAAGTCGTGGACTTT
789748 AAGAAGGTAT
Statistics
Matches: 125, Mismatches: 15, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
60 33 0.26
61 65 0.52
62 4 0.03
63 23 0.18
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.28
Consensus pattern (60 bp):
TGCCACTAAGTCGTGGACTTTGGGACAAAATGCCACTGAGTCGTGGCTTTGAGAAGAGAT
Found at i:796993 original size:52 final size:52
Alignment explanation
Indices: 796845--796973 Score: 249
Period size: 52 Copynumber: 2.5 Consensus size: 52
796835 CGAAATATGA
796845 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
*
796897 AAATTTGCCTGTATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
796949 AAATTTGCCTGCATGTATCGATACA
1 AAATTTGCCTGCATGTATCGATACA
796974 AAGATCAGTG
Statistics
Matches: 75, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
52 75 1.00
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.35
Consensus pattern (52 bp):
AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
Found at i:797000 original size:13 final size:13
Alignment explanation
Indices: 796982--797006 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
796972 CAAAGATCAG
796982 TGTATCGATACAA
1 TGTATCGATACAA
796995 TGTATCGATACA
1 TGTATCGATACA
797007 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:797095 original size:32 final size:32
Alignment explanation
Indices: 797054--797153 Score: 182
Period size: 32 Copynumber: 3.1 Consensus size: 32
797044 TTAGTAACTG
* *
797054 TACATTGTATCAATACAAAACTTATGTATCGA
1 TACATTGTATCGATACAACACTTATGTATCGA
797086 TACATTGTATCGATACAACACTTATGTATCGA
1 TACATTGTATCGATACAACACTTATGTATCGA
797118 TACATTGTATCGATACAACACTTATGTATCGA
1 TACATTGTATCGATACAACACTTATGTATCGA
797150 TACA
1 TACA
797154 AATCGTTGAA
Statistics
Matches: 66, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 66 1.00
ACGTcount: A:0.37, C:0.18, G:0.11, T:0.34
Consensus pattern (32 bp):
TACATTGTATCGATACAACACTTATGTATCGA
Found at i:797096 original size:13 final size:13
Alignment explanation
Indices: 797078--797134 Score: 60
Period size: 13 Copynumber: 3.9 Consensus size: 13
797068 ACAAAACTTA
797078 TGTATCGATACAT
1 TGTATCGATACAT
797091 TGTATCGATACAACACTT
1 TGTATCGAT---ACA--T
797109 ATGTATCGATACAT
1 -TGTATCGATACAT
797123 TGTATCGATACA
1 TGTATCGATACA
797135 ACACTTATGT
Statistics
Matches: 38, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
13 21 0.55
14 1 0.03
16 6 0.16
18 1 0.03
19 9 0.24
ACGTcount: A:0.33, C:0.18, G:0.14, T:0.35
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:797115 original size:19 final size:19
Alignment explanation
Indices: 797059--797154 Score: 90
Period size: 19 Copynumber: 5.7 Consensus size: 19
797049 AACTGTACAT
* *
797059 TGTATCAATACAAAACTTA
1 TGTATCGATACAACACTTA
797078 TGTATCGAT---ACA--T-
1 TGTATCGATACAACACTTA
797091 TGTATCGATACAACACTTA
1 TGTATCGATACAACACTTA
797110 TGTATCGAT---ACA--T-
1 TGTATCGATACAACACTTA
797123 TGTATCGATACAACACTTA
1 TGTATCGATACAACACTTA
797142 TGTATCGATACAA
1 TGTATCGATACAA
797155 ATCGTTGAAA
Statistics
Matches: 63, Mismatches: 2, Indels: 24
0.71 0.02 0.27
Matches are distributed among these distances:
13 18 0.29
14 2 0.03
16 11 0.17
18 2 0.03
19 30 0.48
ACGTcount: A:0.38, C:0.18, G:0.11, T:0.33
Consensus pattern (19 bp):
TGTATCGATACAACACTTA
Found at i:800294 original size:6 final size:6
Alignment explanation
Indices: 800283--800315 Score: 57
Period size: 6 Copynumber: 5.5 Consensus size: 6
800273 AATCTTGGTT
*
800283 TATAAA TATAAA CATAAA TATAAA TATAAA TAT
1 TATAAA TATAAA TATAAA TATAAA TATAAA TAT
800316 TCTTAATTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.64, C:0.03, G:0.00, T:0.33
Consensus pattern (6 bp):
TATAAA
Found at i:801210 original size:13 final size:13
Alignment explanation
Indices: 801192--801216 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
801182 CTATTTATGA
801192 TGTATCGATACAC
1 TGTATCGATACAC
801205 TGTATCGATACA
1 TGTATCGATACA
801217 TAAATAGTGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAC
Found at i:801292 original size:10 final size:10
Alignment explanation
Indices: 801265--801303 Score: 62
Period size: 10 Copynumber: 4.0 Consensus size: 10
801255 TAGTGATACG
801265 TGAACAGTG-
1 TGAACAGTGA
801274 TGAACAGTGA
1 TGAACAGTGA
*
801284 TGAATAGTGA
1 TGAACAGTGA
801294 TGAACAGTGA
1 TGAACAGTGA
801304 AAATGAGATT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
9 9 0.33
10 18 0.67
ACGTcount: A:0.38, C:0.08, G:0.31, T:0.23
Consensus pattern (10 bp):
TGAACAGTGA
Found at i:801391 original size:53 final size:53
Alignment explanation
Indices: 801327--801463 Score: 238
Period size: 53 Copynumber: 2.6 Consensus size: 53
801317 CTACTACCAA
801327 TGTATCGATACATATTTTGTGTATCGATACAAATTTGGCTACTGCCAATAACC
1 TGTATCGATACATATTTTGTGTATCGATACAAATTTGGCTACTGCCAATAACC
* **
801380 TGTATCGATACATATTGTGTGTATCGATACAAATTTGGCTACTGCCAATGTCC
1 TGTATCGATACATATTTTGTGTATCGATACAAATTTGGCTACTGCCAATAACC
801433 TGTATCGATACATATTTGTGTGTATCGATAC
1 TGTATCGATACATATTT-TGTGTATCGATAC
801464 TATGCAATCT
Statistics
Matches: 79, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
53 66 0.84
54 13 0.16
ACGTcount: A:0.28, C:0.18, G:0.18, T:0.37
Consensus pattern (53 bp):
TGTATCGATACATATTTTGTGTATCGATACAAATTTGGCTACTGCCAATAACC
Found at i:801569 original size:21 final size:21
Alignment explanation
Indices: 801543--801583 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
801533 GTCAACCTTG
801543 TGTATTAATACCAATA-GTATA
1 TGTATTAATA-CAATACGTATA
*
801564 TGTATTGATACAATACGTAT
1 TGTATTAATACAATACGTAT
801584 TTTTACTTAG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.39, C:0.10, G:0.12, T:0.39
Consensus pattern (21 bp):
TGTATTAATACAATACGTATA
Found at i:808101 original size:119 final size:118
Alignment explanation
Indices: 807885--808123 Score: 334
Period size: 119 Copynumber: 2.0 Consensus size: 118
807875 ATGGCTGCAT
* * *
807885 ATGTACATGATAGAAAAGTGTAGTTTGAAGGGCTAATCTCAAATAAAAATGATAAATATTCAAGA
1 ATGTACATGATAGAAAAGTGCAGTTTGAAGGGCCAATCTCAAATAAAAATGACAAATATTCAAGA
* *
807950 AAAAAATCAGGTTTTGTGTATTTGCTTGTCAAATTTTGGAAAATTATTTTTGC
66 AAAAAATCAGGTTTTGAGTATTTCCTTGTCAAATTTTGGAAAATTATTTTTGC
* ** * **
808003 ATGTACATGATAGAAAAGTGCAGTTTTAAGGGGCCAATCTCGGATCAAAATGACAAATATTTGAG
1 ATGTACATGATAGAAAAGTGCAGTTTGAA-GGGCCAATCTCAAATAAAAATGACAAATATTCAAG
* * * *
808068 ACAAAATTCAGTTTTTGAGTATTTCCTTGTCAAATTTTGGAAATTTATTTTTGC
65 AAAAAAATCAGGTTTTGAGTATTTCCTTGTCAAATTTTGGAAAATTATTTTTGC
808122 AT
1 AT
808124 ATGATATCAT
Statistics
Matches: 105, Mismatches: 15, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
118 27 0.26
119 78 0.74
ACGTcount: A:0.36, C:0.10, G:0.18, T:0.36
Consensus pattern (118 bp):
ATGTACATGATAGAAAAGTGCAGTTTGAAGGGCCAATCTCAAATAAAAATGACAAATATTCAAGA
AAAAAATCAGGTTTTGAGTATTTCCTTGTCAAATTTTGGAAAATTATTTTTGC
Found at i:809477 original size:22 final size:19
Alignment explanation
Indices: 809434--809477 Score: 61
Period size: 21 Copynumber: 2.2 Consensus size: 19
809424 AGTTTATGGA
809434 TTTTGTTGATATATTTGAT
1 TTTTGTTGATATATTTGAT
*
809453 TTTTGTTGTATTTATGTTGAT
1 TTTTGTTG-ATATAT-TTGAT
809474 TTTT
1 TTTT
809478 ATTACAACAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 8 0.36
20 5 0.23
21 9 0.41
ACGTcount: A:0.16, C:0.00, G:0.16, T:0.68
Consensus pattern (19 bp):
TTTTGTTGATATATTTGAT
Found at i:811068 original size:21 final size:20
Alignment explanation
Indices: 811038--811092 Score: 74
Period size: 20 Copynumber: 2.7 Consensus size: 20
811028 TTTTACAATT
811038 TGTATCGATACAATAAGTGAA
1 TGTATCGATAC-ATAAGTGAA
*
811059 TGTATTGATACATAAGTGAA
1 TGTATCGATACATAAGTGAA
* *
811079 TGTTTCAATACATA
1 TGTATCGATACATA
811093 CATGTCTGAA
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
20 20 0.67
21 10 0.33
ACGTcount: A:0.40, C:0.09, G:0.16, T:0.35
Consensus pattern (20 bp):
TGTATCGATACATAAGTGAA
Found at i:812687 original size:154 final size:153
Alignment explanation
Indices: 812529--812905 Score: 399
Period size: 153 Copynumber: 2.5 Consensus size: 153
812519 CGGTTCTGAG
** **
812529 AAATTATCAAAATG-CCTTTAGGGGATACTTTCGATGTGAAAA-TATC-TCGGTACCCTTAAAGG
1 AAATTATCAAAATGTCC-TTAGGGGATACTTTCGACAT-AAAAGTA-CAT-GACACCCTTAAAGG
* *
812591 ACTTAAAAAGGATACAGATGGATGAACCAATCCTAAACATCCACCTTTAGAATAAAAGCGGACCT
62 ACTAAAAAAGGATACAAATGGATGAACCAATCCTAAACATCCACCTTTAGAATAAAAGCGGACCT
812656 GATTATAATCTAGGACTCGTTTTTAAA
127 GATTATAATCTAGGACTCGTTTTTAAA
* *
812683 AAATTATGAAAATGTCCTTAGGGGATACTTTTGACATAAAAGTACATGACACCCTTAAAGGACTA
1 AAATTATCAAAATGTCCTTAGGGGATACTTTCGACATAAAAGTACATGACACCCTTAAAGGACTA
* * * * *
812748 AAAAATGATATAAATGGATGAACCTATCCTAAATATCCACCTTTAGCATAAAAGCGGACCTCG-T
66 AAAAAGGATACAAATGGATGAACCAATCCTAAACATCCACCTTTAGAATAAAAGCGGACCT-GAT
* *** * ** *
812812 GATGGCCTAAGACTCCATTCTAAA
130 TATAATCTAGGACTCGTTTTTAAA
* * * *
812836 AAATTATGAAAATGCCCTT-GGGAAATACCTTT-GACATAAAAGTAC-TCGATACCCTTAAAGGA
1 AAATTATCAAAATGTCCTTAGGG-GATA-CTTTCGACATAAAAGTACAT-GACACCCTTAAAGGA
*
812898 CTTAAAAA
63 CTAAAAAA
812906 TGTGAGAGAA
Statistics
Matches: 191, Mismatches: 25, Indels: 15
0.83 0.11 0.06
Matches are distributed among these distances:
152 4 0.02
153 147 0.77
154 38 0.20
155 2 0.01
ACGTcount: A:0.39, C:0.18, G:0.16, T:0.27
Consensus pattern (153 bp):
AAATTATCAAAATGTCCTTAGGGGATACTTTCGACATAAAAGTACATGACACCCTTAAAGGACTA
AAAAAGGATACAAATGGATGAACCAATCCTAAACATCCACCTTTAGAATAAAAGCGGACCTGATT
ATAATCTAGGACTCGTTTTTAAA
Found at i:812786 original size:153 final size:153
Alignment explanation
Indices: 812580--812907 Score: 437
Period size: 153 Copynumber: 2.1 Consensus size: 153
812570 ATATCTCGGT
* *
812580 ACCCTTAAAGGACTTAAAAAGGATACAGATGGATGAACCAATCCTAAACATCCACCTTTAGAATA
1 ACCCTTAAAGGACTTAAAAATGATACAAATGGATGAACCAATCCTAAACATCCACCTTTAGAATA
* * * ** * * *
812645 AAAGCGGACCT-GATTATAATCTAGGACTCGTTTTTAAAAAATTATGAAAATGTCCTTAGGG-GA
66 AAAGCGGACCTCG-TGATAACCTAAGACTCCATTCTAAAAAATTATGAAAATGCCCTT-GGGAAA
*
812708 TACTTTTGACATAAAAGTACAT-GAC
129 TACCTTTGACATAAAAGTAC-TCGAC
* * * * *
812733 ACCCTTAAAGGACTAAAAAATGATATAAATGGATGAACCTATCCTAAATATCCACCTTTAGCATA
1 ACCCTTAAAGGACTTAAAAATGATACAAATGGATGAACCAATCCTAAACATCCACCTTTAGAATA
**
812798 AAAGCGGACCTCGTGATGGCCTAAGACTCCATTCTAAAAAATTATGAAAATGCCCTTGGGAAATA
66 AAAGCGGACCTCGTGATAACCTAAGACTCCATTCTAAAAAATTATGAAAATGCCCTTGGGAAATA
*
812863 CCTTTGACATAAAAGTACTCGAT
131 CCTTTGACATAAAAGTACTCGAC
812886 ACCCTTAAAGGACTTAAAAATG
1 ACCCTTAAAGGACTTAAAAATG
812908 TGAGAGAATG
Statistics
Matches: 152, Mismatches: 20, Indels: 6
0.85 0.11 0.03
Matches are distributed among these distances:
152 4 0.03
153 147 0.97
154 1 0.01
ACGTcount: A:0.40, C:0.19, G:0.16, T:0.26
Consensus pattern (153 bp):
ACCCTTAAAGGACTTAAAAATGATACAAATGGATGAACCAATCCTAAACATCCACCTTTAGAATA
AAAGCGGACCTCGTGATAACCTAAGACTCCATTCTAAAAAATTATGAAAATGCCCTTGGGAAATA
CCTTTGACATAAAAGTACTCGAC
Found at i:819654 original size:13 final size:14
Alignment explanation
Indices: 819623--819659 Score: 67
Period size: 14 Copynumber: 2.7 Consensus size: 14
819613 AACCCTGATA
819623 TATCGATACATTAG
1 TATCGATACATTAG
819637 TATCGATACATT-G
1 TATCGATACATTAG
819650 TATCGATACA
1 TATCGATACA
819660 AGGTTACTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
13 11 0.48
14 12 0.52
ACGTcount: A:0.35, C:0.16, G:0.14, T:0.35
Consensus pattern (14 bp):
TATCGATACATTAG
Found at i:822656 original size:463 final size:463
Alignment explanation
Indices: 821791--822732 Score: 1857
Period size: 463 Copynumber: 2.0 Consensus size: 463
821781 TGAAAAATCA
* *
821791 CCTCGGACTCGTTTGGTATCAAAAAATTACAAATGATACCTTTCGGAAAGCGAAATTCATGATCT
1 CCTCGGAGTAGTTTGGTATCAAAAAATTACAAATGATACCTTTCGGAAAGCGAAATTCATGATCT
821856 TTTTACGAAAAATGTTAGGAAAATTTGGAAAAACCGTCTGCTAGGCCTGAACGGCCCAAACCGAA
66 TTTTACGAAAAATGTTAGGAAAATTTGGAAAAACCGTCTGCTAGGCCTGAACGGCCCAAACCGAA
821921 TGCATTCAGCTAAACCTAGGGATTCTGGACAGCTTGGGTTTGAAAAATCATATCTTCCTCATCCG
131 TGCATTCAGCTAAACCTAGGGATTCTGGACAGCTTGGGTTTGAAAAATCATATCTTCCTCATCCG
821986 GACTGGTCCACGGGCAAATAAGATACCGTTGGAAAGATATTTTGACACACTTTAAGGTGAAAATA
196 GACTGGTCCACGGGCAAATAAGATACCGTTGGAAAGATATTTTGACACACTTTAAGGTGAAAATA
822051 CTAAAAAATTTTACAAAACTCGTTTAGTATTTTAAAATAATTTTTCAATACGCAACAGTGTTGTT
261 CTAAAAAATTTTACAAAACTCGTTTAGTATTTTAAAATAATTTTTCAATACGCAACAGTGTTGTT
822116 GCCAGCAAGAACAAAGCAAAACAGGGGACTGGTCTTGGTTTCCTACATGTTTACGGATTTAAACT
326 GCCAGCAAGAACAAAGCAAAACAGGGGACTGGTCTTGGTTTCCTACATGTTTACGGATTTAAACT
822181 CGAGTCATGGACATCCGAACATCCGTGACCGAAAGGAGAGAGTGGTATGAGCATCACGAACTCAT
391 CGAGTCATGGACATCCGAACATCCGTGACCGAAAGGAGAGAGTGGTATGAGCATCACGAACTCAT
822246 TTGCACTG
456 TTGCACTG
822254 CCTCGGAGTAGTTTGGTATCAAAAAATTACAAATGATACCTTTCGGAAAGCGAAATTCATGATCT
1 CCTCGGAGTAGTTTGGTATCAAAAAATTACAAATGATACCTTTCGGAAAGCGAAATTCATGATCT
822319 TTTTACGAAAAATGTTAGGAAAATTTGGAAAAACCGTCTGCTAGGCCTGAACGGCCCAAACCGAA
66 TTTTACGAAAAATGTTAGGAAAATTTGGAAAAACCGTCTGCTAGGCCTGAACGGCCCAAACCGAA
822384 TGCATTCAGCTAAACCTAGGGATTCTGGACAGCTTGGGTTTGAAAAATCATATCTTCCTCATCCG
131 TGCATTCAGCTAAACCTAGGGATTCTGGACAGCTTGGGTTTGAAAAATCATATCTTCCTCATCCG
*
822449 GACTGGTCCAGGGGCAAATAAGATACCGTTGGAAAGATATTTTGACACACTTTAAGGTGAAAATA
196 GACTGGTCCACGGGCAAATAAGATACCGTTGGAAAGATATTTTGACACACTTTAAGGTGAAAATA
822514 CTAAAAAATTTTACAAAACTCGTTTAGTATTTTAAAATAATTTTTCAATACGCAACAGTGTTGTT
261 CTAAAAAATTTTACAAAACTCGTTTAGTATTTTAAAATAATTTTTCAATACGCAACAGTGTTGTT
822579 GCCAGCAAGAACAAAGCAAAACAGGGGACTGGTCTTGGTTTCCTACATGTTTACGGATTTAAACT
326 GCCAGCAAGAACAAAGCAAAACAGGGGACTGGTCTTGGTTTCCTACATGTTTACGGATTTAAACT
822644 CGAGTCATGGACATCCGAACATCCGTGACCGAAAGGAGAGAGTGGTATGAGCATCACGAACTCAT
391 CGAGTCATGGACATCCGAACATCCGTGACCGAAAGGAGAGAGTGGTATGAGCATCACGAACTCAT
822709 TTGCACTG
456 TTGCACTG
822717 CCTCGGAGTAGTTTGG
1 CCTCGGAGTAGTTTGG
822733 GATGATGAAA
Statistics
Matches: 476, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
463 476 1.00
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.27
Consensus pattern (463 bp):
CCTCGGAGTAGTTTGGTATCAAAAAATTACAAATGATACCTTTCGGAAAGCGAAATTCATGATCT
TTTTACGAAAAATGTTAGGAAAATTTGGAAAAACCGTCTGCTAGGCCTGAACGGCCCAAACCGAA
TGCATTCAGCTAAACCTAGGGATTCTGGACAGCTTGGGTTTGAAAAATCATATCTTCCTCATCCG
GACTGGTCCACGGGCAAATAAGATACCGTTGGAAAGATATTTTGACACACTTTAAGGTGAAAATA
CTAAAAAATTTTACAAAACTCGTTTAGTATTTTAAAATAATTTTTCAATACGCAACAGTGTTGTT
GCCAGCAAGAACAAAGCAAAACAGGGGACTGGTCTTGGTTTCCTACATGTTTACGGATTTAAACT
CGAGTCATGGACATCCGAACATCCGTGACCGAAAGGAGAGAGTGGTATGAGCATCACGAACTCAT
TTGCACTG
Found at i:824340 original size:48 final size:49
Alignment explanation
Indices: 824107--824975 Score: 1100
Period size: 49 Copynumber: 17.8 Consensus size: 49
824097 AAAAGGATGT
* * * * * * *
824107 CAATATGCTGATTCACGGTCAGCAACAGTTAGACTTGAAGATGAGAAGAATGC
1 CAATATGCTGATTCAAGGCCAGCTATA-TTGGACTTAAAGAT--GAAG-GTGC
* * * * ** *
824160 CAATGTGCTGATTCAAGGCCAACGACATTGGGTTTTAAAAATGATGAAGGCGC
1 CAATATGCTGATTCAAGGCCAGCTATATT-GGACTT--AAA-GATGAAGGTGC
* * * *
824213 CAATATGCTGAGTCAAGGCCAGCGATATTGGACTTAAAGACGAAGGTAC
1 CAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGC
* * * * *
824262 CAATGTGTTGAGTCAAGGCCAGCGACATTGGACTTAAAGATG-AGGTGC
1 CAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGC
* *
824310 CAATATGCTGATTCAAGGCCAACTATATTGGACTTAAAGGTG-AGGTGC
1 CAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGC
*
824358 CAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGCTG-AGGTGC
1 CAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGC
*
824406 CAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTG-AGGTGC
1 CAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGC
824454 CAATATGCTGATTCAAGGCCAGCTATATTGGACTT----A--AAGGTGC
1 CAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGC
* * *
824497 CAATATGCTGATTCAATGCCAGCTACATTGGACTTAGAGATGAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGC
* * * *
824546 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACGTAAAGATGAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGC
*
824595 TAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGC
* *
824644 CAATATGCTGATTCAGGGCCA-CTGATATTGGACTTAAAGGTG-AGGTGC
1 CAATATGCTGATTCAAGGCCAGCT-ATATTGGACTTAAAGATGAAGGTGC
* *
824692 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGC
* *
824741 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGC
* *
824790 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGC
* * *
824839 CAATGTGCTGATTCAAGG-CAGCTATATTGGACTTAAAGGTG-AGGTGG
1 CAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGC
*
824886 CAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGATAAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA---GATGAAGGTGC
*
824938 CAATATGCTGATTCAAGGCCAGCTATAGTGGACTTAAA
1 CAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
824976 AGAAAATGCC
Statistics
Matches: 734, Mismatches: 63, Indels: 39
0.88 0.08 0.05
Matches are distributed among these distances:
43 39 0.05
47 23 0.03
48 257 0.35
49 301 0.41
50 3 0.00
51 2 0.00
52 48 0.07
53 52 0.07
54 4 0.01
55 2 0.00
56 3 0.00
ACGTcount: A:0.31, C:0.17, G:0.26, T:0.25
Consensus pattern (49 bp):
CAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGC
Found at i:824726 original size:195 final size:195
Alignment explanation
Indices: 824107--824975 Score: 1164
Period size: 195 Copynumber: 4.4 Consensus size: 195
824097 AAAAGGATGT
* * * * * *
824107 CAATATGCTGATTCACGGTCAGCAACAGTTAGACTTGAAGATGAGAAGAATGCCAATGTGCTGAT
1 CAATATGCTGATTCAAGGCCAGCTACA-TTGGACTTAAAGAT--GAAG-GTGCCAATGTGCTGAT
* * ** * * *
824172 TCAAGGCCAACGACATTGGGTTTTAAAAATGATGAAGGCGCCAATATGCTGAGTCAAGGCCAGCG
62 TCAAGGCCAGCTACATT-GGACTT--AAA-GATGAAGGTGCCAATATGCTGATTCAAGGCCAGCT
* * * * * * * *
824237 ATATTGGACTTAAAGACGAAGGTACCAATGTGTTGAGTCAAGGCCAGCGACATTGGACTTAAAGA
123 ATATTGGACTTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGG
824302 TGAGGTGC
188 TGAGGTGC
* * * *
824310 CAATATGCTGATTCAAGGCCAACTATATTGGACTTAAAGGTG-AGGTGCCAATATGCTGATTCAA
1 CAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATGTGCTGATTCAA
* *
824374 GGCCAGCTATATTGGACTTAAAGCTG-AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGA
66 GGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGA
*
824438 CTTAAAGGTG-AGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT-AA----AGGTGC
131 CTTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGC
* * *
824497 CAATATGCTGATTCAATGCCAGCTACATTGGACTTAGAGATGAAGGTGCCAATGTGCTGAGTCAA
1 CAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATGTGCTGATTCAA
* *
824562 GGCCAGCTACATTGGACGTAAAGATGAAGGTGCTAATATGCTGATTCAAGGCCAGCTATATTGGA
66 GGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGA
*
824627 CTTAAAGATGAAGGTGCCAATATGCTGATTCAGGGCCA-CTGATATTGGACTTAAAGGTGAGGTG
131 CTTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCT-ATATTGGACTTAAAGGTGAGGTG
824691 C
195 C
*
824692 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATGTGCTGATTCAA
1 CAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATGTGCTGATTCAA
* *
824757 GGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGA
66 GGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGA
* *
824822 CTTAAAGATGAAGGTGCCAATGTGCTGATTCAAGG-CAGCTATATTGGACTTAAAGGTGAGGTGG
131 CTTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGC
* * *
824886 CAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGATAAAGGTGCCAATATGCTGATT
1 CAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAA---GATGAAGGTGCCAATGTGCTGATT
* *
824951 CAAGGCCAGCTATAGTGGACTTAAA
63 CAAGGCCAGCTACATTGGACTTAAA
824976 AGAAAATGCC
Statistics
Matches: 596, Mismatches: 57, Indels: 32
0.87 0.08 0.05
Matches are distributed among these distances:
187 43 0.07
188 43 0.07
189 48 0.08
190 37 0.06
191 4 0.01
192 35 0.06
193 43 0.07
194 64 0.11
195 166 0.28
197 49 0.08
198 28 0.05
199 2 0.00
200 1 0.00
202 11 0.02
203 22 0.04
ACGTcount: A:0.31, C:0.17, G:0.26, T:0.25
Consensus pattern (195 bp):
CAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATGTGCTGATTCAA
GGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGA
CTTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAGGTGC
Found at i:826520 original size:1 final size:1
Alignment explanation
Indices: 826516--826593 Score: 57
Period size: 1 Copynumber: 78.0 Consensus size: 1
826506 TTTGTTGTTG
* * * * * * * * *
826516 TTTTTTTTGTTTGTTTGTTTTTTTTTCTTTTTTTCTCTCTTTTTTTTTGTTTTTTGTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* *
826581 CTTTTTTGTTTTT
1 TTTTTTTTTTTTT
826594 GGAGGACGTC
Statistics
Matches: 55, Mismatches: 22, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
1 55 1.00
ACGTcount: A:0.00, C:0.06, G:0.08, T:0.86
Consensus pattern (1 bp):
T
Done.