Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold320
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2598547
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 499 characters in sequence are not A, C, G, or T
File 7 of 17
Found at i:906489 original size:155 final size:155
Alignment explanation
Indices: 906249--906594 Score: 378
Period size: 155 Copynumber: 2.2 Consensus size: 155
906239 TTCAACGTAG
* * * ** * *
906249 AAGTATCTGATGCCCCTAAAGGACTTGAAAAGGACTATAAAAGGGTTGAACTTGTCCTAAATACC
1 AAGTATCTGATACCCCTAAAGGACTTAAAAAGAACTATAAAAGGAATGAACCTATCCTAAATACC
* *
906314 CATCTTCGACATAAAAGCGGACAC-GGTTATAACCTAAGACTTGGTTCTAAAAAA-TACAAAAAT
66 CATCTTCGACATAAAAGCGGAC-CTGGTGATAACCTAAGACTTGATTCTAAAAAATTACAAAAAT
906377 ACCCTTAGAGGATACCATCGATGTGA
130 ACCCTTAGAGGATACCATCGATGTGA
* *
906403 AAGTATCTCGATACCCCTATAGGACTTAAAAAGAACTATAAAAGGAATGAACCTATCTTAAATAC
1 AAGTATCT-GATACCCCTAAAGGACTTAAAAAGAACTATAAAAGGAATGAACCTATCCTAAATAC
* * * *
906468 TCA-CATTC-AGCATAAAAGCGGACCTGGTGATAACTTAAGACTTGATTTTAAAAAATTAGAAAA
65 CCATC-TTCGA-CATAAAAGCGGACCTGGTGATAACCTAAGACTTGATTCTAAAAAATTACAAAA
* * * * *
906531 ATACCCCTATG-GGTATACCTTTGACGTAA
128 ATACCCTTA-GAGG-ATACCATCGATGTGA
* * * *
906560 AAGTATTCCGACAACCCTAAAGAACTTAAAAAGAA
1 AAGTA-TCTGATACCCCTAAAGGACTTAAAAAGAA
906595 TTTTAACTGG
Statistics
Matches: 159, Mismatches: 25, Indels: 13
0.81 0.13 0.07
Matches are distributed among these distances:
154 11 0.07
155 91 0.57
156 16 0.10
157 39 0.25
158 2 0.01
ACGTcount: A:0.41, C:0.19, G:0.16, T:0.25
Consensus pattern (155 bp):
AAGTATCTGATACCCCTAAAGGACTTAAAAAGAACTATAAAAGGAATGAACCTATCCTAAATACC
CATCTTCGACATAAAAGCGGACCTGGTGATAACCTAAGACTTGATTCTAAAAAATTACAAAAATA
CCCTTAGAGGATACCATCGATGTGA
Found at i:908056 original size:29 final size:28
Alignment explanation
Indices: 907992--908048 Score: 87
Period size: 28 Copynumber: 2.0 Consensus size: 28
907982 ACTAGAGAAA
*
907992 AAAATAAACTCCAAAAAACACAAGCTTT
1 AAAATAAACACCAAAAAACACAAGCTTT
* *
908020 AAAATAAACACCAAAAAATACAGGCTTT
1 AAAATAAACACCAAAAAACACAAGCTTT
908048 A
1 A
908049 CATTTAAATC
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.58, C:0.19, G:0.05, T:0.18
Consensus pattern (28 bp):
AAAATAAACACCAAAAAACACAAGCTTT
Found at i:908448 original size:12 final size:10
Alignment explanation
Indices: 908415--908458 Score: 54
Period size: 9 Copynumber: 4.2 Consensus size: 10
908405 ATTTTTCTAC
908415 CTTTTTTTTT
1 CTTTTTTTTT
908425 C-TTTTTTTT
1 CTTTTTTTTT
908434 CTTTTTATTTAT
1 CTTTTT-TTT-T
908446 CTTTCTTTTTT
1 CTTT-TTTTTT
908457 CT
1 CT
908459 CTCTCTTCTT
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
9 9 0.30
10 5 0.17
11 6 0.20
12 8 0.27
13 2 0.07
ACGTcount: A:0.05, C:0.14, G:0.00, T:0.82
Consensus pattern (10 bp):
CTTTTTTTTT
Found at i:911164 original size:10 final size:10
Alignment explanation
Indices: 911149--911176 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
911139 AGAAGCAGTT
911149 GAAATATAAG
1 GAAATATAAG
911159 GAAATATAAG
1 GAAATATAAG
911169 GAAATATA
1 GAAATATA
911177 TCACCTTTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.61, C:0.00, G:0.18, T:0.21
Consensus pattern (10 bp):
GAAATATAAG
Found at i:916127 original size:2 final size:2
Alignment explanation
Indices: 916122--916167 Score: 83
Period size: 2 Copynumber: 23.0 Consensus size: 2
916112 GGGGGGGGGG
*
916122 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GT GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
916164 GA GA
1 GA GA
916168 TGGGAAAAAA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.48, C:0.00, G:0.50, T:0.02
Consensus pattern (2 bp):
GA
Found at i:916976 original size:16 final size:16
Alignment explanation
Indices: 916947--916978 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
916937 GAAATATTTT
916947 ATTATTTTTAAAAAAA
1 ATTATTTTTAAAAAAA
916963 ATTATATTTTAAAAAA
1 ATTAT-TTTTAAAAAA
916979 TATATGATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (16 bp):
ATTATTTTTAAAAAAA
Found at i:918572 original size:43 final size:43
Alignment explanation
Indices: 918513--918605 Score: 168
Period size: 43 Copynumber: 2.2 Consensus size: 43
918503 ATTTATGTCA
*
918513 TCAATGATAAATACCACCCTAGGTTTTTCTTTTTCTCCATGTG
1 TCAATGATAAATACCACCCTACGTTTTTCTTTTTCTCCATGTG
*
918556 TCAATGATAAATACCACCCTTCGTTTTTCTTTTTCTCCATGTG
1 TCAATGATAAATACCACCCTACGTTTTTCTTTTTCTCCATGTG
918599 TCAATGA
1 TCAATGA
918606 GGAGGTTCAA
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 48 1.00
ACGTcount: A:0.24, C:0.24, G:0.11, T:0.42
Consensus pattern (43 bp):
TCAATGATAAATACCACCCTACGTTTTTCTTTTTCTCCATGTG
Found at i:924561 original size:13 final size:15
Alignment explanation
Indices: 924530--924561 Score: 50
Period size: 13 Copynumber: 2.3 Consensus size: 15
924520 GGGAAGTGGA
924530 TGACAAGTAGCTGGC
1 TGACAAGTAGCTGGC
924545 TGACAA-TAGCT-GC
1 TGACAAGTAGCTGGC
924558 TGAC
1 TGAC
924562 TTGGCAATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
13 6 0.35
14 5 0.29
15 6 0.35
ACGTcount: A:0.28, C:0.22, G:0.28, T:0.22
Consensus pattern (15 bp):
TGACAAGTAGCTGGC
Found at i:928982 original size:13 final size:15
Alignment explanation
Indices: 928963--928998 Score: 51
Period size: 13 Copynumber: 2.6 Consensus size: 15
928953 TAGGATGAAA
928963 ATAAAAATAATT-AT
1 ATAAAAATAATTAAT
928977 -TAAAAAT-ATTAAT
1 ATAAAAATAATTAAT
928990 ATAAAAATA
1 ATAAAAATA
928999 TATTGATAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 5
0.79 0.00 0.21
Matches are distributed among these distances:
12 3 0.16
13 9 0.47
14 7 0.37
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (15 bp):
ATAAAAATAATTAAT
Found at i:929073 original size:21 final size:21
Alignment explanation
Indices: 929017--929074 Score: 59
Period size: 21 Copynumber: 2.9 Consensus size: 21
929007 AATTTGTTAT
*
929017 ATATTATAA-TAA-TATTTAA
1 ATATTTTAATTAATTATTTAA
* *
929036 AAATTTT-ATATATTTATTTAA
1 ATATTTTAAT-TAATTATTTAA
929057 ATATTTTAATTAATTATT
1 ATATTTTAATTAATTATT
929075 ATATAATTAT
Statistics
Matches: 30, Mismatches: 5, Indels: 6
0.73 0.12 0.15
Matches are distributed among these distances:
18 1 0.03
19 5 0.17
20 2 0.07
21 20 0.67
22 2 0.07
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (21 bp):
ATATTTTAATTAATTATTTAA
Found at i:936042 original size:13 final size:13
Alignment explanation
Indices: 936011--936058 Score: 55
Period size: 12 Copynumber: 3.8 Consensus size: 13
936001 TTTTATTATT
936011 TTATTTAAAA-TA
1 TTATTTAAAATTA
*
936023 ATATTTAAAATTA
1 TTATTTAAAATTA
*
936036 TTATTTAGAATTA
1 TTATTTAAAATTA
*
936049 -TATTAAAAAT
1 TTATTTAAAAT
936059 AACATTCCTT
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
12 17 0.57
13 13 0.43
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (13 bp):
TTATTTAAAATTA
Found at i:936051 original size:25 final size:25
Alignment explanation
Indices: 936011--936058 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
936001 TTTTATTATT
*
936011 TTATTTAAAATAATATTTAAAATTA
1 TTATTTAAAATAATATTAAAAATTA
* *
936036 TTATTTAGAATTATATTAAAAAT
1 TTATTTAAAATAATATTAAAAAT
936059 AACATTCCTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (25 bp):
TTATTTAAAATAATATTAAAAATTA
Found at i:936297 original size:18 final size:18
Alignment explanation
Indices: 936248--936300 Score: 56
Period size: 18 Copynumber: 3.0 Consensus size: 18
936238 TAATTAAAAT
*
936248 TTTTAAAATAA-ATATAA
1 TTTTAAAATAATATTTAA
* *
936265 ATTTAAAA-AATTATTTCA
1 TTTTAAAATAA-TATTTAA
936283 TTTTAAAATAATATTTAA
1 TTTTAAAATAATATTTAA
936301 ATAATATTTT
Statistics
Matches: 28, Mismatches: 5, Indels: 5
0.74 0.13 0.13
Matches are distributed among these distances:
16 2 0.07
17 7 0.25
18 17 0.61
19 2 0.07
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (18 bp):
TTTTAAAATAATATTTAA
Found at i:937217 original size:23 final size:25
Alignment explanation
Indices: 937174--937223 Score: 68
Period size: 23 Copynumber: 2.1 Consensus size: 25
937164 ATAAAAATAT
* *
937174 TTTTAAAATTATTATTTTAATTTAA
1 TTTTAAAATAATTATTTTAATTAAA
937199 TTTT-AAATAATT-TTTTAATTAAA
1 TTTTAAAATAATTATTTTAATTAAA
937222 TT
1 TT
937224 GATATTTCGT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
23 12 0.52
24 7 0.30
25 4 0.17
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (25 bp):
TTTTAAAATAATTATTTTAATTAAA
Found at i:937861 original size:32 final size:32
Alignment explanation
Indices: 937820--937885 Score: 132
Period size: 32 Copynumber: 2.1 Consensus size: 32
937810 ATATATTGAT
937820 AAAACAATATGATATTTAATATAAAATTAAAA
1 AAAACAATATGATATTTAATATAAAATTAAAA
937852 AAAACAATATGATATTTAATATAAAATTAAAA
1 AAAACAATATGATATTTAATATAAAATTAAAA
937884 AA
1 AA
937886 TTAAAGATTT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.64, C:0.03, G:0.03, T:0.30
Consensus pattern (32 bp):
AAAACAATATGATATTTAATATAAAATTAAAA
Found at i:937936 original size:28 final size:27
Alignment explanation
Indices: 937883--937938 Score: 69
Period size: 27 Copynumber: 2.0 Consensus size: 27
937873 TAAAATTAAA
*
937883 AAATTAAAGATTTAAAATTTATTAATT
1 AAATTAAAGATTTAAAATATATTAATT
*
937910 AAATATAAA-ATTTTAAATATATATAATT
1 AAAT-TAAAGATTTAAAATATAT-TAATT
937938 A
1 A
937939 TTCTTTTACC
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
27 15 0.60
28 10 0.40
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (27 bp):
AAATTAAAGATTTAAAATATATTAATT
Found at i:949881 original size:22 final size:22
Alignment explanation
Indices: 949826--949882 Score: 55
Period size: 22 Copynumber: 2.6 Consensus size: 22
949816 AATATAAAAA
*
949826 TATATATTGATATATAAATTAT
1 TATAAATTGATATATAAATTAT
* *
949848 TATATATAGATATAT-AA-TATT
1 TATAAATTGATATATAAATTA-T
949869 TATACAATTGATAT
1 TATA-AATTGATAT
949883 CTATTACAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
20 2 0.07
21 7 0.23
22 21 0.70
ACGTcount: A:0.46, C:0.02, G:0.05, T:0.47
Consensus pattern (22 bp):
TATAAATTGATATATAAATTAT
Found at i:954458 original size:2 final size:2
Alignment explanation
Indices: 954451--954489 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
954441 TGTGTATGCA
954451 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
954490 GCACCCAATA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:955262 original size:21 final size:21
Alignment explanation
Indices: 955233--955273 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
955223 GCATTTTAAA
955233 AAATATAATTAA-ATATAATT
1 AAATATAATTAAGATATAATT
955253 AAATCATAATTAAGATATAAT
1 AAAT-ATAATTAAGATATAAT
955274 ATTAAACATA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 4 0.21
21 8 0.42
22 7 0.37
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.37
Consensus pattern (21 bp):
AAATATAATTAAGATATAATT
Found at i:955263 original size:11 final size:10
Alignment explanation
Indices: 955233--955273 Score: 64
Period size: 10 Copynumber: 3.9 Consensus size: 10
955223 GCATTTTAAA
955233 AAATATAATT
1 AAATATAATT
955243 AAATATAATT
1 AAATATAATT
955253 AAATCATAATT
1 AAAT-ATAATT
955264 AAGATATAAT
1 AA-ATATAAT
955274 ATTAAACATA
Statistics
Matches: 29, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
10 14 0.48
11 13 0.45
12 2 0.07
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.37
Consensus pattern (10 bp):
AAATATAATT
Found at i:955766 original size:16 final size:17
Alignment explanation
Indices: 955747--955797 Score: 70
Period size: 16 Copynumber: 3.1 Consensus size: 17
955737 TTATTTCCAT
955747 TTTTTTAAAT-TTTTAA
1 TTTTTTAAATATTTTAA
955763 TTTTTT-AATATTTTAA
1 TTTTTTAAATATTTTAA
*
955779 TTTTTCACAATATTTTAA
1 TTTTTTA-AATATTTTAA
955797 T
1 T
955798 ATAATAATAT
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
15 3 0.10
16 17 0.55
18 11 0.35
ACGTcount: A:0.31, C:0.04, G:0.00, T:0.65
Consensus pattern (17 bp):
TTTTTTAAATATTTTAA
Found at i:955777 original size:8 final size:8
Alignment explanation
Indices: 955757--955816 Score: 52
Period size: 8 Copynumber: 7.4 Consensus size: 8
955747 TTTTTTAAAT
*
955757 TTTTAATT
1 TTTTAATA
955765 TTTTAATA
1 TTTTAATA
955773 TTTTAAT-
1 TTTTAATA
955780 TTTTCACAATA
1 TTTT---AATA
955791 TTTTAATA
1 TTTTAATA
**
955799 TAATAATA
1 TTTTAATA
955807 -TTTAATA
1 TTTTAATA
955814 TTT
1 TTT
955817 AAAAAATTTT
Statistics
Matches: 42, Mismatches: 5, Indels: 10
0.74 0.09 0.18
Matches are distributed among these distances:
7 9 0.21
8 26 0.62
10 3 0.07
11 4 0.10
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.60
Consensus pattern (8 bp):
TTTTAATA
Found at i:957827 original size:25 final size:25
Alignment explanation
Indices: 957799--957855 Score: 62
Period size: 25 Copynumber: 2.2 Consensus size: 25
957789 TAATTAAAAA
**
957799 TATTATAATTATTTTTATTT-TATTT
1 TATTATAA-TATTAATATTTATATTT
*
957824 TATTATTAATATTAATATTTATGTTT
1 TATTA-TAATATTAATATTTATATTT
957850 TATTAT
1 TATTAT
957856 TTTATTATAT
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
25 15 0.56
26 12 0.44
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.67
Consensus pattern (25 bp):
TATTATAATATTAATATTTATATTT
Found at i:957836 original size:34 final size:34
Alignment explanation
Indices: 957797--957863 Score: 93
Period size: 34 Copynumber: 2.0 Consensus size: 34
957787 CATAATTAAA
957797 AATATT-ATAATTAT-TTTTATTTTATTTTATTATT
1 AATATTAATAATTATGTTTTA--TTATTTTATTATT
*
957831 AATATTAATATTTATGTTTTATTATTTTATTAT
1 AATATTAATAATTATGTTTTATTATTTTATTAT
957864 ATTATATCTT
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
34 18 0.60
35 7 0.23
36 5 0.17
ACGTcount: A:0.33, C:0.00, G:0.01, T:0.66
Consensus pattern (34 bp):
AATATTAATAATTATGTTTTATTATTTTATTATT
Found at i:963614 original size:64 final size:64
Alignment explanation
Indices: 963532--963656 Score: 232
Period size: 64 Copynumber: 2.0 Consensus size: 64
963522 TTCAACGTAG
*
963532 ATCTTTAAAACATAATAAATGCGTTTTAGACTTAAAGAAATAAAAAATATTTTCAATGCAATAT
1 ATCTTTAAAACATAATAAATGCGTTTTAAACTTAAAGAAATAAAAAATATTTTCAATGCAATAT
*
963596 ATCTTTAAAACATAATAAATGCGTTTTAAACTTAAAGAAATATAAAATATTTTCAATGCAA
1 ATCTTTAAAACATAATAAATGCGTTTTAAACTTAAAGAAATAAAAAATATTTTCAATGCAA
963657 ACTTTTGTTC
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
64 59 1.00
ACGTcount: A:0.49, C:0.10, G:0.07, T:0.34
Consensus pattern (64 bp):
ATCTTTAAAACATAATAAATGCGTTTTAAACTTAAAGAAATAAAAAATATTTTCAATGCAATAT
Found at i:965837 original size:16 final size:17
Alignment explanation
Indices: 965798--965838 Score: 50
Period size: 16 Copynumber: 2.5 Consensus size: 17
965788 ATGTATTAAA
965798 AATTAAAAAAATATGCT
1 AATTAAAAAAATATGCT
*
965815 AAATAAAATAAATA-G-T
1 AATTAAAA-AAATATGCT
965831 AATTAAAA
1 AATTAAAA
965839 CATAAAATGA
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
16 8 0.38
17 8 0.38
18 5 0.24
ACGTcount: A:0.66, C:0.02, G:0.05, T:0.27
Consensus pattern (17 bp):
AATTAAAAAAATATGCT
Found at i:966179 original size:9 final size:9
Alignment explanation
Indices: 966165--966193 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
966155 TTTCAATACG
966165 AAAAAAGAA
1 AAAAAAGAA
966174 AAAAAAGAA
1 AAAAAAGAA
966183 AAAAAA-AA
1 AAAAAAGAA
966191 AAA
1 AAA
966194 GGTAAAAATG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 5 0.25
9 15 0.75
ACGTcount: A:0.93, C:0.00, G:0.07, T:0.00
Consensus pattern (9 bp):
AAAAAAGAA
Found at i:966183 original size:16 final size:15
Alignment explanation
Indices: 966164--966193 Score: 51
Period size: 15 Copynumber: 1.9 Consensus size: 15
966154 ATTTCAATAC
966164 GAAAAAAGAAAAAAAA
1 GAAAAAA-AAAAAAAA
966180 GAAAAAAAAAAAAA
1 GAAAAAAAAAAAAA
966194 GGTAAAAATG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (15 bp):
GAAAAAAAAAAAAAA
Found at i:966310 original size:18 final size:18
Alignment explanation
Indices: 966289--966323 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
966279 ACGAAAGGAC
966289 TATTTATAATTT-TTTAAA
1 TATTTA-AATTTATTTAAA
966307 TATTTAAATTTATTTAA
1 TATTTAAATTTATTTAA
966324 TTTATTATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (18 bp):
TATTTAAATTTATTTAAA
Found at i:966500 original size:23 final size:23
Alignment explanation
Indices: 966431--966506 Score: 64
Period size: 23 Copynumber: 3.2 Consensus size: 23
966421 TATATCGAAT
*
966431 TTAAATATTTTATTATATATAAAAA
1 TTAAATATTTTA-TAT-TATTAAAA
* * * * *
966456 TAAAATAAGTTTA-AATAATAAAT
1 TTAAAT-ATTTTATATTATTAAAA
966479 TTAAATATTTTATATTATTAAAA
1 TTAAATATTTTATATTATTAAAA
966502 TTAAA
1 TTAAA
966507 ATAAATTAAA
Statistics
Matches: 38, Mismatches: 11, Indels: 6
0.69 0.20 0.11
Matches are distributed among these distances:
22 5 0.13
23 22 0.58
24 1 0.03
25 5 0.13
26 5 0.13
ACGTcount: A:0.54, C:0.00, G:0.01, T:0.45
Consensus pattern (23 bp):
TTAAATATTTTATATTATTAAAA
Found at i:966519 original size:47 final size:48
Alignment explanation
Indices: 966428--966540 Score: 144
Period size: 47 Copynumber: 2.4 Consensus size: 48
966418 ATATATATCG
* *
966428 AATTTAAATATTTTAT-TATATATAAAAATAAAATAAGTTTAAATAATA
1 AATTTAAATATTTTATAT-TATATAAAAATAAAATAAATTAAAATAATA
* *
966476 AATTTAAATATTTTATATTAT-TAAAATTAAAATAAATTAAAATAATT
1 AATTTAAATATTTTATATTATATAAAAATAAAATAAATTAAAATAATA
966523 AATATTAAA-A-TTTATATT
1 AAT-TTAAATATTTTATATT
966541 TAAATTTATT
Statistics
Matches: 59, Mismatches: 4, Indels: 6
0.86 0.06 0.09
Matches are distributed among these distances:
46 8 0.14
47 26 0.44
48 24 0.41
49 1 0.02
ACGTcount: A:0.55, C:0.00, G:0.01, T:0.44
Consensus pattern (48 bp):
AATTTAAATATTTTATATTATATAAAAATAAAATAAATTAAAATAATA
Found at i:966565 original size:24 final size:21
Alignment explanation
Indices: 966538--966601 Score: 58
Period size: 24 Copynumber: 2.8 Consensus size: 21
966528 TAAAATTTAT
966538 ATTTAAATTTATTATAAATAATAA
1 ATTTAAATTTATTA-AAA-AAT-A
*
966562 ATTTAATATTTAAATTAAAAAATT
1 ATTTAA-ATTT--ATTAAAAAATA
966586 ATTTAAATTTA-TAAAA
1 ATTTAAATTTATTAAAA
966602 TTTAAATCTA
Statistics
Matches: 36, Mismatches: 1, Indels: 10
0.77 0.02 0.21
Matches are distributed among these distances:
20 5 0.14
21 1 0.03
23 4 0.11
24 12 0.33
25 7 0.19
26 3 0.08
27 4 0.11
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (21 bp):
ATTTAAATTTATTAAAAAATA
Found at i:966593 original size:37 final size:37
Alignment explanation
Indices: 966494--966645 Score: 104
Period size: 38 Copynumber: 4.2 Consensus size: 37
966484 TATTTTATAT
* * *
966494 TATTAAAATTAAAATAA--ATTAAAATAATTAATATTAA
1 TATTTAAATTAAAA-AATTATTTAAATAATAAAT-TTAA
* * * *
966531 AATTTATATT-TAAATTTATTATAAATAATAAATTTAA
1 TATTTAAATTAAAAAATTATT-TAAATAATAAATTTAA
*
966568 TATTTAAATTAAAAAATTATTTAAATTTATAAAATTTAA
1 TATTTAAATTAAAAAATTATTTAAA-TAAT-AAATTTAA
* * *
966607 -ATCTAAA--AAAAAATTAATTAAATAAT--ATTAAA
1 TATTTAAATTAAAAAATTATTTAAATAATAAATTTAA
966639 TATTTAA
1 TATTTAA
966646 TTTTTTAACT
Statistics
Matches: 91, Mismatches: 17, Indels: 18
0.72 0.13 0.14
Matches are distributed among these distances:
32 5 0.05
33 5 0.05
35 4 0.04
36 16 0.18
37 26 0.29
38 27 0.30
39 8 0.09
ACGTcount: A:0.57, C:0.01, G:0.00, T:0.42
Consensus pattern (37 bp):
TATTTAAATTAAAAAATTATTTAAATAATAAATTTAA
Found at i:966603 original size:18 final size:17
Alignment explanation
Indices: 966568--966616 Score: 57
Period size: 17 Copynumber: 2.9 Consensus size: 17
966558 ATAAATTTAA
966568 TATTTAAATTAAAAAAT
1 TATTTAAATTAAAAAAT
* *
966585 TATTTAAATTTATAAA-
1 TATTTAAATTAAAAAAT
966601 -ATTTAAATCTAAAAAA
1 TATTTAAAT-TAAAAAA
966617 AAATTAATTA
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
15 8 0.30
16 5 0.19
17 14 0.52
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (17 bp):
TATTTAAATTAAAAAAT
Found at i:976262 original size:12 final size:12
Alignment explanation
Indices: 976245--976269 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
976235 TGAGAAGAAT
976245 ATTCTTTTTAGA
1 ATTCTTTTTAGA
976257 ATTCTTTTTAGA
1 ATTCTTTTTAGA
976269 A
1 A
976270 CATCTGTGGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.28, C:0.08, G:0.08, T:0.56
Consensus pattern (12 bp):
ATTCTTTTTAGA
Found at i:976746 original size:2 final size:2
Alignment explanation
Indices: 976739--976778 Score: 53
Period size: 2 Copynumber: 20.0 Consensus size: 2
976729 AAAATTTTTC
* * *
976739 AT AT AT AT AT AT AT AT AT AT AT AT GT AT GT AT GT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
976779 GTGTGTGTAT
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.42, C:0.00, G:0.07, T:0.50
Consensus pattern (2 bp):
AT
Found at i:976787 original size:18 final size:18
Alignment explanation
Indices: 976739--976788 Score: 55
Period size: 18 Copynumber: 2.8 Consensus size: 18
976729 AAAATTTTTC
* * *
976739 ATATATATATATATATAT
1 ATATATGTATGTATGTAT
976757 ATATATGTATGTATGTAT
1 ATATATGTATGTATGTAT
* *
976775 ATATGTGTGTGTAT
1 ATATATGTATGTAT
976789 AATTTGACAT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.36, C:0.00, G:0.14, T:0.50
Consensus pattern (18 bp):
ATATATGTATGTATGTAT
Found at i:977956 original size:13 final size:15
Alignment explanation
Indices: 977933--977972 Score: 57
Period size: 13 Copynumber: 2.8 Consensus size: 15
977923 GTGCTCGAAT
*
977933 ATATATTAAATAT-A
1 ATATTTTAAATATAA
977947 A-ATTTTAAATATAA
1 ATATTTTAAATATAA
977961 ATATTTTAAATA
1 ATATTTTAAATA
977973 AATAATAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
13 10 0.43
14 3 0.13
15 10 0.43
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (15 bp):
ATATTTTAAATATAA
Found at i:978752 original size:24 final size:24
Alignment explanation
Indices: 978715--978764 Score: 82
Period size: 24 Copynumber: 2.1 Consensus size: 24
978705 TACTCAAGTT
* *
978715 TTATTTTGTGATTTTTGTTATTCC
1 TTATTTTATAATTTTTGTTATTCC
978739 TTATTTTATAATTTTTGTTATTCC
1 TTATTTTATAATTTTTGTTATTCC
978763 TT
1 TT
978765 TTGATTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.16, C:0.08, G:0.08, T:0.68
Consensus pattern (24 bp):
TTATTTTATAATTTTTGTTATTCC
Found at i:979387 original size:2 final size:2
Alignment explanation
Indices: 979380--979404 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
979370 AACCTAACTC
979380 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
979405 TGAAGTAATG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:979978 original size:27 final size:31
Alignment explanation
Indices: 979921--979982 Score: 78
Period size: 31 Copynumber: 2.1 Consensus size: 31
979911 TGATTTTTAT
* *
979921 ATAATTATAATTTATTATAATTGCATTTTAC
1 ATAATTATAATTTATAATAATTGCATATTAC
979952 ATAATTATAA-TTATAATAA-T-CA-ATTAC
1 ATAATTATAATTTATAATAATTGCATATTAC
979979 ATAA
1 ATAA
979983 AAAATGATAA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
27 8 0.28
28 2 0.07
29 1 0.03
30 8 0.28
31 10 0.34
ACGTcount: A:0.47, C:0.06, G:0.02, T:0.45
Consensus pattern (31 bp):
ATAATTATAATTTATAATAATTGCATATTAC
Found at i:980463 original size:61 final size:62
Alignment explanation
Indices: 980354--980491 Score: 156
Period size: 61 Copynumber: 2.3 Consensus size: 62
980344 TAGCCTAAGC
* *
980354 TATCAATAACATAA-AACACAAACCAATAAAATATTCTTAATAACATAAATTAACAAAA-AA
1 TATCAATAACATAATAACACAAACCAATAAAATATTCTCAATAACATAAACTAACAAAATAA
* * * * * * *
980414 TATCAATAACACAATAATACAAA-TAGATAAAATATTCTCACTAATATAAACTATCAAAATAT
1 TATCAATAACATAATAACACAAACCA-ATAAAATATTCTCAATAACATAAACTAACAAAATAA
*
980476 TATTAATAACATAATA
1 TATCAATAACATAATA
980492 GCATTAACGA
Statistics
Matches: 64, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
60 14 0.22
61 35 0.55
62 15 0.23
ACGTcount: A:0.58, C:0.14, G:0.01, T:0.28
Consensus pattern (62 bp):
TATCAATAACATAATAACACAAACCAATAAAATATTCTCAATAACATAAACTAACAAAATAA
Found at i:980607 original size:88 final size:89
Alignment explanation
Indices: 980442--980607 Score: 208
Period size: 88 Copynumber: 1.9 Consensus size: 89
980432 ACAAATAGAT
* * * ** * * *
980442 AAAATATTCTCACTAATATAAACTATCAAAATATTATTAATAACATAATAGCATTAACGAACAAA
1 AAAATATTCTCACTAAAATAAACTAACAAAATATCACCAATAACAAAATAACATAAACGAACAAA
* *
980507 ATATTCTTACTAAAACATATGGAC
66 ATATGCTCACTAAAACATATGGAC
*
980531 AAAATATTCTCACTAAAAT-AACTAACAAAATATCACCAATAACAAAATAATATAAACGAACAAA
1 AAAATATTCTCACTAAAATAAACTAACAAAATATCACCAATAACAAAATAACATAAACGAACAAA
* *
980595 TTATGGTCACTAA
66 ATATGCTCACTAA
980608 CATAATCTAA
Statistics
Matches: 64, Mismatches: 13, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
88 46 0.72
89 18 0.28
ACGTcount: A:0.53, C:0.16, G:0.04, T:0.27
Consensus pattern (89 bp):
AAAATATTCTCACTAAAATAAACTAACAAAATATCACCAATAACAAAATAACATAAACGAACAAA
ATATGCTCACTAAAACATATGGAC
Found at i:980647 original size:61 final size:61
Alignment explanation
Indices: 980540--980658 Score: 150
Period size: 61 Copynumber: 2.0 Consensus size: 61
980530 CAAAATATTC
*
980540 TCACTAAAATAACTAACAAAATATCACCAATAACAAAATAATATAAACGAACAAATTATGG
1 TCACTAAAATAACTAACAAAATATCACCAATAACAAAATAACATAAACGAACAAATTATGG
* * ** * * *
980601 TCACTAACATAATCTAACAAAATATTATTAATAA-TATATAACATAAACGAGCAAATTA
1 TCACTAAAATAA-CTAACAAAATATCACCAATAACAAAATAACATAAACGAACAAATTA
980659 CCATCAATAA
Statistics
Matches: 49, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
61 31 0.63
62 18 0.37
ACGTcount: A:0.55, C:0.15, G:0.04, T:0.25
Consensus pattern (61 bp):
TCACTAAAATAACTAACAAAATATCACCAATAACAAAATAACATAAACGAACAAATTATGG
Found at i:983430 original size:26 final size:24
Alignment explanation
Indices: 983388--983436 Score: 62
Period size: 26 Copynumber: 2.0 Consensus size: 24
983378 AAAAGTTTGC
**
983388 AAATTATTTATTTATTTAATATAAT
1 AAATTATTTATAAATTT-ATATAAT
983413 AAATATATTTATAAATTTATATAA
1 AAAT-TATTTATAAATTTATATAA
983437 ATATTAATTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 10 0.48
26 11 0.52
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (24 bp):
AAATTATTTATAAATTTATATAAT
Found at i:983439 original size:26 final size:25
Alignment explanation
Indices: 983388--983465 Score: 65
Period size: 25 Copynumber: 3.2 Consensus size: 25
983378 AAAAGTTTGC
**
983388 AAATTATTTATTTATTTAATATAAT
1 AAATTATTTATAAATTTAATATAAT
983413 AAATATATTTATAAATTT-ATATAA-
1 AAAT-TATTTATAAATTTAATATAAT
* *
983437 ATATTAATTA-AAATATTAA-ATAAAT
1 AAATTATTTATAAAT-TTAATAT-AAT
983462 AAAT
1 AAAT
983466 AACACAATAT
Statistics
Matches: 43, Mismatches: 5, Indels: 10
0.74 0.09 0.17
Matches are distributed among these distances:
22 4 0.09
23 9 0.21
24 6 0.14
25 13 0.30
26 11 0.26
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (25 bp):
AAATTATTTATAAATTTAATATAAT
Found at i:990964 original size:29 final size:26
Alignment explanation
Indices: 990921--990973 Score: 61
Period size: 29 Copynumber: 1.9 Consensus size: 26
990911 AATCCCAAAT
*
990921 AAAAAAAGAACAGCAATAGCAAAAGC
1 AAAAAAAGAACAGCAACAGCAAAAGC
*
990947 AAAAAAACGAAACTAGCAGCAGCAAAA
1 AAAAAAA-G-AAC-AGCAACAGCAAAA
990974 TCAATATGAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
26 7 0.32
27 1 0.05
28 3 0.14
29 11 0.50
ACGTcount: A:0.64, C:0.17, G:0.15, T:0.04
Consensus pattern (26 bp):
AAAAAAAGAACAGCAACAGCAAAAGC
Found at i:992959 original size:21 final size:21
Alignment explanation
Indices: 992935--993000 Score: 57
Period size: 21 Copynumber: 3.0 Consensus size: 21
992925 ATTCTGAATG
992935 AAATAAATTTAAATTTTAATT
1 AAATAAATTTAAATTTTAATT
*
992956 AAATTAATTTGAATTATTATTTAATT
1 AAATAAATTT-AA--A-T-TTTAATT
992982 AAA-AAA-TTAAA-TTTAATT
1 AAATAAATTTAAATTTTAATT
993000 A
1 A
993001 GGAAACATGA
Statistics
Matches: 38, Mismatches: 2, Indels: 13
0.72 0.04 0.25
Matches are distributed among these distances:
18 8 0.21
21 10 0.26
22 2 0.05
23 2 0.05
24 3 0.08
25 3 0.08
26 10 0.26
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.47
Consensus pattern (21 bp):
AAATAAATTTAAATTTTAATT
Found at i:993204 original size:123 final size:123
Alignment explanation
Indices: 993077--993312 Score: 343
Period size: 123 Copynumber: 1.9 Consensus size: 123
993067 TTTTAGGGCA
* * *
993077 CTCG-TTTTTTAATAATTTAATTAATC-GAGCTATCTTTAATTTAGATTTATAGGATCCAGATTA
1 CTCGTTTTTTTAATAA-TCAATTAATCAG-GCTATCTTTAATTTAGATGTATAAGATCCAGATTA
* *
993140 ATTGGGCTTAATTCATTATAA-TTTTAGCTTATTTCAAAAAAAGAAAGAAAGATTAGAGCG
64 ATTGAGCTTAATTCATTATAATTTTTA-CTTATTTCAAAAAAAAAAAGAAAGATTAGAGCG
* *
993200 CTCGTTTTTTTAATAATCAATTAATCAGGCTATCTTTAATTTGGATGTATAAGATCTAGATTAAT
1 CTCGTTTTTTTAATAATCAATTAATCAGGCTATCTTTAATTTAGATGTATAAGATCCAGATTAAT
* *
993265 TGAGCTTAATTCGTTTTAATTTTTACTTATTTCAAAAAAAAAAAGAAA
66 TGAGCTTAATTCATTATAATTTTTACTTATTTCAAAAAAAAAAAGAAA
993313 AAACGAGTGG
Statistics
Matches: 101, Mismatches: 9, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
123 84 0.83
124 17 0.17
ACGTcount: A:0.37, C:0.10, G:0.12, T:0.41
Consensus pattern (123 bp):
CTCGTTTTTTTAATAATCAATTAATCAGGCTATCTTTAATTTAGATGTATAAGATCCAGATTAAT
TGAGCTTAATTCATTATAATTTTTACTTATTTCAAAAAAAAAAAGAAAGATTAGAGCG
Found at i:994127 original size:17 final size:16
Alignment explanation
Indices: 994105--994155 Score: 75
Period size: 16 Copynumber: 3.1 Consensus size: 16
994095 TTTGGGTGAG
994105 AAGGAAAAAGAAAAAGA
1 AAGGAAAAAGAAAAA-A
*
994122 AAGGAAGAAGAAAAAA
1 AAGGAAAAAGAAAAAA
*
994138 AAGGACAAAGAAAAAA
1 AAGGAAAAAGAAAAAA
994154 AA
1 AA
994156 AATGTTTGAG
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
16 17 0.55
17 14 0.45
ACGTcount: A:0.76, C:0.02, G:0.22, T:0.00
Consensus pattern (16 bp):
AAGGAAAAAGAAAAAA
Found at i:994156 original size:17 final size:16
Alignment explanation
Indices: 994105--994156 Score: 61
Period size: 17 Copynumber: 3.1 Consensus size: 16
994095 TTTGGGTGAG
*
994105 AAGGAAAAAGAAAAAGA
1 AAGG-AAAAGAAAAAAA
994122 AAGGAAGAAG-AAAAAA
1 AAGGAA-AAGAAAAAAA
994138 AAGGACAAAGAAAAAAA
1 AAGGA-AAAGAAAAAAA
994155 AA
1 AA
994157 ATGTTTGAGT
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
16 15 0.48
17 16 0.52
ACGTcount: A:0.77, C:0.02, G:0.21, T:0.00
Consensus pattern (16 bp):
AAGGAAAAGAAAAAAA
Found at i:997477 original size:23 final size:22
Alignment explanation
Indices: 997434--997477 Score: 52
Period size: 23 Copynumber: 2.0 Consensus size: 22
997424 ATTTGAATAT
* * *
997434 TTATTATTTTTATTTTTTTGTG
1 TTATTATTTATATTATATTGTG
997456 TTATATATTTATATTATATTGT
1 TTAT-TATTTATATTATATTGT
997478 TTTTGTATTT
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
22 4 0.22
23 14 0.78
ACGTcount: A:0.23, C:0.00, G:0.07, T:0.70
Consensus pattern (22 bp):
TTATTATTTATATTATATTGTG
Found at i:1002512 original size:33 final size:32
Alignment explanation
Indices: 1002451--1002512 Score: 81
Period size: 33 Copynumber: 1.9 Consensus size: 32
1002441 ATTATCCATG
*
1002451 TATCGATACAATGAACATGTATCAATATAATA
1 TATCGATACAAAGAACATGTATCAATATAATA
*
1002483 TATCGATACAAAGCATA-ATGTATCGATATA
1 TATCGATACAAAG-A-ACATGTATCAATATA
1002513 TCTGGGTGTG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
32 12 0.46
33 13 0.50
34 1 0.04
ACGTcount: A:0.45, C:0.13, G:0.11, T:0.31
Consensus pattern (32 bp):
TATCGATACAAAGAACATGTATCAATATAATA
Found at i:1006252 original size:32 final size:31
Alignment explanation
Indices: 1006212--1006276 Score: 94
Period size: 32 Copynumber: 2.1 Consensus size: 31
1006202 AAATTTTAAA
* * *
1006212 ATCTTAGATAAGTTTAAACTCTATTAACTCT
1 ATCTTAGATAAATCTAAACTCTATCAACTCT
1006243 ATCTCTAGATAAATCTAAACTCTATCAACTCT
1 ATCT-TAGATAAATCTAAACTCTATCAACTCT
1006275 AT
1 AT
1006277 AAAGTCCTAA
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
31 4 0.13
32 26 0.87
ACGTcount: A:0.37, C:0.20, G:0.05, T:0.38
Consensus pattern (31 bp):
ATCTTAGATAAATCTAAACTCTATCAACTCT
Found at i:1007872 original size:16 final size:17
Alignment explanation
Indices: 1007831--1007873 Score: 54
Period size: 16 Copynumber: 2.6 Consensus size: 17
1007821 TTGATTATTA
1007831 TTTTTATTAATATTAAC
1 TTTTTATTAATATTAAC
* *
1007848 TATTT-TTAATA-TAAG
1 TTTTTATTAATATTAAC
1007863 TTTTTATTAAT
1 TTTTTATTAAT
1007874 TATTTTCTTA
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
15 7 0.32
16 11 0.50
17 4 0.18
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.60
Consensus pattern (17 bp):
TTTTTATTAATATTAAC
Found at i:1009194 original size:18 final size:18
Alignment explanation
Indices: 1009171--1009207 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
1009161 TTTTTTAATA
1009171 TATTATTTTAAATAATTC
1 TATTATTTTAAATAATTC
*
1009189 TATTATTTTAGATAATTC
1 TATTATTTTAAATAATTC
1009207 T
1 T
1009208 TTTTCATGAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.35, C:0.05, G:0.03, T:0.57
Consensus pattern (18 bp):
TATTATTTTAAATAATTC
Found at i:1012068 original size:6 final size:6
Alignment explanation
Indices: 1012059--1012085 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
1012049 TGGTGCAGCA
1012059 GAAGAT GAAGAT GAAGAT GAAGAT GAA
1 GAAGAT GAAGAT GAAGAT GAAGAT GAA
1012086 ACTGTTGCGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.52, C:0.00, G:0.33, T:0.15
Consensus pattern (6 bp):
GAAGAT
Found at i:1017495 original size:2 final size:2
Alignment explanation
Indices: 1017488--1017519 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
1017478 CCCTAGCTAG
1017488 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1017520 GATCTCTTTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1018774 original size:14 final size:15
Alignment explanation
Indices: 1018746--1018774 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
1018736 AATAATTAAT
1018746 AATTATTTTTAAAAA
1 AATTATTTTTAAAAA
1018761 AATTATTTTTAAAA
1 AATTATTTTTAAAA
1018775 GTTTTAACAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
AATTATTTTTAAAAA
Found at i:1018861 original size:32 final size:31
Alignment explanation
Indices: 1018825--1018894 Score: 88
Period size: 32 Copynumber: 2.2 Consensus size: 31
1018815 AAAGTTTTAA
* *
1018825 AAATAATATTT-TTTTAAATATTATTAAATTAT
1 AAATAATATTTATCTT-AATACTATTAAATT-T
1018857 AAATAATATTTATCTTAATACTATTAAATTT
1 AAATAATATTTATCTTAATACTATTAAATTT
1018888 AAGATAA
1 AA-ATAA
1018895 AAAGATGATT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
31 3 0.09
32 28 0.82
33 3 0.09
ACGTcount: A:0.49, C:0.03, G:0.01, T:0.47
Consensus pattern (31 bp):
AAATAATATTTATCTTAATACTATTAAATTT
Found at i:1020421 original size:2 final size:2
Alignment explanation
Indices: 1020414--1020440 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
1020404 ATGAATGATA
1020414 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1020441 AAAAACAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:1024810 original size:16 final size:16
Alignment explanation
Indices: 1024789--1024824 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
1024779 TGTCAGCTCT
*
1024789 AATTATCTATAATATA
1 AATTATATATAATATA
1024805 AATTATATATAATATA
1 AATTATATATAATATA
1024821 AATT
1 AATT
1024825 TAATAAAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.44
Consensus pattern (16 bp):
AATTATATATAATATA
Found at i:1025690 original size:15 final size:17
Alignment explanation
Indices: 1025659--1025693 Score: 56
Period size: 15 Copynumber: 2.2 Consensus size: 17
1025649 ATTTGGTTGC
1025659 AAAGAAAAGTGAGAAAA
1 AAAGAAAAGTGAGAAAA
1025676 AAAGAAAA-T-AGAAAA
1 AAAGAAAAGTGAGAAAA
1025691 AAA
1 AAA
1025694 ATATTATTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 9 0.50
16 1 0.06
17 8 0.44
ACGTcount: A:0.77, C:0.00, G:0.17, T:0.06
Consensus pattern (17 bp):
AAAGAAAAGTGAGAAAA
Found at i:1027116 original size:16 final size:16
Alignment explanation
Indices: 1027097--1027127 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
1027087 TATTTAAATT
1027097 TAATTATAAAAATATA
1 TAATTATAAAAATATA
*
1027113 TAATTATTAAAATAT
1 TAATTATAAAAATAT
1027128 TTTTTAGTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (16 bp):
TAATTATAAAAATATA
Found at i:1028299 original size:21 final size:23
Alignment explanation
Indices: 1028254--1028296 Score: 65
Period size: 20 Copynumber: 2.0 Consensus size: 23
1028244 CAATTAAATT
1028254 TTTTATTCTTAATTAATTTAAAA
1 TTTTATTCTTAATTAATTTAAAA
1028277 TTTTATT-TT-ATT-ATTTAAAA
1 TTTTATTCTTAATTAATTTAAAA
1028297 ATTAAAAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
20 8 0.40
21 3 0.15
22 2 0.10
23 7 0.35
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.60
Consensus pattern (23 bp):
TTTTATTCTTAATTAATTTAAAA
Found at i:1028305 original size:29 final size:28
Alignment explanation
Indices: 1028273--1028330 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 28
1028263 TAATTAATTT
* * *
1028273 AAAATTTTATTTTATTATTTAAAAATTAA
1 AAAATTATATATTAATATTT-AAAATTAA
*
1028302 AAAATTATATATTAATATTTATAATTAA
1 AAAATTATATATTAATATTTAAAATTAA
1028330 A
1 A
1028331 TTTAAATAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
28 8 0.32
29 17 0.68
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (28 bp):
AAAATTATATATTAATATTTAAAATTAA
Found at i:1028703 original size:19 final size:18
Alignment explanation
Indices: 1028681--1028728 Score: 62
Period size: 17 Copynumber: 2.7 Consensus size: 18
1028671 TATTTATAAT
*
1028681 TATATAATTAT-AATATA
1 TATATAATTATAAAAATA
1028698 TATATAATTATAAAAATA
1 TATATAATTATAAAAATA
*
1028716 TGATGTAATTATA
1 T-ATATAATTATA
1028729 TTATCAAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
17 11 0.41
18 6 0.22
19 10 0.37
ACGTcount: A:0.52, C:0.00, G:0.04, T:0.44
Consensus pattern (18 bp):
TATATAATTATAAAAATA
Found at i:1028774 original size:18 final size:18
Alignment explanation
Indices: 1028736--1028787 Score: 54
Period size: 18 Copynumber: 2.9 Consensus size: 18
1028726 ATATTATCAA
*
1028736 AATTTATAGAATATAAA-T
1 AATTTATATAATA-AAATT
1028754 AATTTATATAATAAAATT
1 AATTTATATAATAAAATT
* *
1028772 AATATAAAT-ATAAAAT
1 AATTTATATAATAAAAT
1028788 ATTTAAATAT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
17 10 0.33
18 20 0.67
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (18 bp):
AATTTATATAATAAAATT
Found at i:1028814 original size:27 final size:26
Alignment explanation
Indices: 1028745--1028814 Score: 70
Period size: 27 Copynumber: 2.7 Consensus size: 26
1028735 AAATTTATAG
*
1028745 AATATAAATAATTTATATAATAAAATT
1 AATATAAAT-ATTTAAATAATAAAATT
* * *
1028772 AATATAAATA-TAAAATATTTAAATAT
1 AATATAAATATTTAAATAATAAAAT-T
*
1028798 AGTATAAATATTTAAAT
1 AATATAAATATTTAAAT
1028815 TACCATATAT
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
25 10 0.29
26 11 0.31
27 14 0.40
ACGTcount: A:0.59, C:0.00, G:0.01, T:0.40
Consensus pattern (26 bp):
AATATAAATATTTAAATAATAAAATT
Found at i:1028823 original size:20 final size:19
Alignment explanation
Indices: 1028772--1028814 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
1028762 TAATAAAATT
1028772 AATATAAATATAAAATATTTA
1 AATAT-AATAT-AAATATTTA
*
1028793 AATATAGTATAAATATTTA
1 AATATAATATAAATATTTA
1028812 AAT
1 AAT
1028815 TACCATATAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 12 0.57
20 4 0.19
21 5 0.24
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (19 bp):
AATATAATATAAATATTTA
Found at i:1028826 original size:2 final size:2
Alignment explanation
Indices: 1028819--1028846 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
1028809 TTAAATTACC
1028819 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1028847 CACCAAATTC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1029110 original size:18 final size:18
Alignment explanation
Indices: 1029065--1029115 Score: 50
Period size: 18 Copynumber: 2.7 Consensus size: 18
1029055 ATCATTAACA
*
1029065 ATTTATTTAATTAATTATT
1 ATTTA-TTAATTAATGATT
*
1029084 -TTATTTTAATTAATGATT
1 ATT-TATTAATTAATGATT
1029102 ATTTATTAAATTAA
1 ATTTATT-AATTAA
1029116 AACATTGAGT
Statistics
Matches: 26, Mismatches: 3, Indels: 6
0.74 0.09 0.17
Matches are distributed among these distances:
18 17 0.65
19 9 0.35
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (18 bp):
ATTTATTAATTAATGATT
Found at i:1034778 original size:26 final size:26
Alignment explanation
Indices: 1034745--1034800 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
1034735 ATAGAGATAG
1034745 GATTGATAAAGTTCAACTTTATCTGA
1 GATTGATAAAGTTCAACTTTATCTGA
*
1034771 GATTGATAAAGTTCAACTTTATTTGA
1 GATTGATAAAGTTCAACTTTATCTGA
1034797 GATT
1 GATT
1034801 CTTAGAAAAG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.34, C:0.09, G:0.16, T:0.41
Consensus pattern (26 bp):
GATTGATAAAGTTCAACTTTATCTGA
Found at i:1038384 original size:20 final size:19
Alignment explanation
Indices: 1038355--1038429 Score: 87
Period size: 20 Copynumber: 3.8 Consensus size: 19
1038345 AAAAAGACAT
1038355 AATGTATCGATACATTGAA
1 AATGTATCGATACATTGAA
* *
1038374 GAATATATCGATACATTCATA
1 -AATGTATCGATACATTGA-A
* *
1038395 CATGTATCGATATATTGAAA
1 AATGTATCGATACATTG-AA
1038415 AATGTATCGATACAT
1 AATGTATCGATACAT
1038430 CTCGGTAAAA
Statistics
Matches: 45, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
20 43 0.96
21 2 0.04
ACGTcount: A:0.41, C:0.12, G:0.13, T:0.33
Consensus pattern (19 bp):
AATGTATCGATACATTGAA
Found at i:1038412 original size:40 final size:39
Alignment explanation
Indices: 1038352--1038429 Score: 120
Period size: 40 Copynumber: 2.0 Consensus size: 39
1038342 GGTAAAAAGA
*
1038352 CATAATGTATCGATACATTGAAGAATATATCGATACATT
1 CATAATGTATCGATACATTGAAAAATATATCGATACATT
* *
1038391 CATACATGTATCGATATATTGAAAAATGTATCGATACAT
1 CATA-ATGTATCGATACATTGAAAAATATATCGATACAT
1038430 CTCGGTAAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
39 4 0.11
40 31 0.89
ACGTcount: A:0.41, C:0.13, G:0.13, T:0.33
Consensus pattern (39 bp):
CATAATGTATCGATACATTGAAAAATATATCGATACATT
Found at i:1039196 original size:29 final size:29
Alignment explanation
Indices: 1038986--1040101 Score: 1413
Period size: 29 Copynumber: 38.3 Consensus size: 29
1038976 TTTTTTTAAA
* * *
1038986 AAAAAGGTGCCACTAACTTATGTGGGCCTTG
1 AAAAGGGTGCCACTGAC-T-TGTGGGCTTTG
* *
1039017 AAAAGAGTTGCCACCGACTCGTGTGGGCTTTG
1 AAAAG-GGTGCCACTGACT--TGTGGGCTTTG
* * * * * *
1039049 GAAAGAGTTACCTCTGGCTTGTGGCCTTT-
1 AAAAG-GGTGCCACTGACTTGTGGGCTTTG
1039078 AAAAGGGTGCCACTGACTTGTGGGCTTTG
1 AAAAGGGTGCCACTGACTTGTGGGCTTTG
* *
1039107 -GAAGGGTGCCACTGATTTGTGTGGGCTTTG
1 AAAAGGGTGCCACTGA-CT-TGTGGGCTTTG
* * *
1039137 AAAAGAGTTGCTACCGACTTGTGTGGGCTTTG
1 AAAAG-GGTGCCACTGAC-T-TGTGGGCTTTG
*
1039169 AAAAGAGTGCCACTGACTTGTGGGCTTTG
1 AAAAGGGTGCCACTGACTTGTGGGCTTTG
* * *
1039198 AAAAGAGTGCCACTAACTTGTGGGTTTTG
1 AAAAGGGTGCCACTGACTTGTGGGCTTTG
*
1039227 AAAA-GGTTCCACTGACTTGTGGGCTTTG
1 AAAAGGGTGCCACTGACTTGTGGGCTTTG
*
1039255 AAAGGGGTGCCACTGACTTGTGGGCTTTG
1 AAAAGGGTGCCACTGACTTGTGGGCTTTG
* *
1039284 AAAGGGGTGCCACTGTCTTGTGGGCTTTG
1 AAAAGGGTGCCACTGACTTGTGGGCTTTG
* *
1039313 AAAAGAGTGCCACTAACTTGTGGGCTTT-
1 AAAAGGGTGCCACTGACTTGTGGGCTTTG
1039341 AAAAGGGTGCCACTGACTTGCATGGGCTTTG
1 AAAAGGGTGCCACTGACTTG--TGGGCTTTG
*
1039372 AAAGGGGTGCCACTGACTTGTGGGCTTTG
1 AAAAGGGTGCCACTGACTTGTGGGCTTTG
*
1039401 -AAAGGGTGCCACTGACTTATGGGCTTTG
1 AAAAGGGTGCCACTGACTTGTGGGCTTTG
*
1039429 AAAAGAGTTGCCACTGACTTGTGGGCTTTG
1 AAAAG-GGTGCCACTGACTTGTGGGCTTTG
*
1039459 AAAAGAGTGCCACTGACTTGTGGGCTTTG
1 AAAAGGGTGCCACTGACTTGTGGGCTTTG
*
1039488 AAAA-GGTGCCACTGTCTTGTGGGCTTTG
1 AAAAGGGTGCCACTGACTTGTGGGCTTTG
* *
1039516 AAAAGAGTGCCACTAACTTGTGGGCTTT-
1 AAAAGGGTGCCACTGACTTGTGGGCTTTG
1039544 AAAAGGGTGCCACTGACTTGCATGGGCTTTG
1 AAAAGGGTGCCACTGACTTG--TGGGCTTTG
*
1039575 AAAGGGGTGCCACTGACTTGTGGGCTTTG
1 AAAAGGGTGCCACTGACTTGTGGGCTTTG
1039604 -AAAGGGTGCCACTGACTTGTGGGCTTTG
1 AAAAGGGTGCCACTGACTTGTGGGCTTTG
*
1039632 AAAAGAGTTGCCACTGACTTGTGGGCTTTG
1 AAAAG-GGTGCCACTGACTTGTGGGCTTTG
*
1039662 AAAAGAGTGCCACTGACTTGTGGGCTTTG
1 AAAAGGGTGCCACTGACTTGTGGGCTTTG
1039691 AAAA-GGTGCCACTGACTTGTGGGCTTTG
1 AAAAGGGTGCCACTGACTTGTGGGCTTTG
* *
1039719 AAAGGGGTGCCACTGTCTTGTGGGCTTTG
1 AAAAGGGTGCCACTGACTTGTGGGCTTTG
* *
1039748 AAAAGAGTGCCACTGACTTGTCGGCTTTG
1 AAAAGGGTGCCACTGACTTGTGGGCTTTG
* *
1039777 AAAAGAGTGCCACTGAATTGTGGGCTTTG
1 AAAAGGGTGCCACTGACTTGTGGGCTTTG
*
1039806 AAAA-GGTGCCACTAACTTGTGGGCTTTG
1 AAAAGGGTGCCACTGACTTGTGGGCTTTG
*
1039834 -AAAGGGTACCACTGACTTGTGTGGGCTTTG
1 AAAAGGGTGCCACTGAC-T-TGTGGGCTTTG
* *
1039864 AAATGGGTGCCACTGACTTGTGGGTTTTG
1 AAAAGGGTGCCACTGACTTGTGGGCTTTG
1039893 AAAA-GGTGCCACTGACTTGTGGGCTTTG
1 AAAAGGGTGCCACTGACTTGTGGGCTTTG
* *
1039921 AAAAGAGTTGCCA-TCGACTCGTGTGAGCTTTG
1 AAAAG-GGTGCCACT-GACT--TGTGGGCTTTG
* * * *
1039953 AAAAGAGTGTCACTAACTTGTGGGTTTTG
1 AAAAGGGTGCCACTGACTTGTGGGCTTTG
1039982 -AAAGGGTGCCACTGACTTGTGGGCTTTG
1 AAAAGGGTGCCACTGACTTGTGGGCTTTG
1040010 -AAAGGGTGCCACTGACTTGTGGGCTTT-
1 AAAAGGGTGCCACTGACTTGTGGGCTTTG
*
1040037 AAAAGGGGTGCCACTAACTTGTGGGCTTTG
1 AAAA-GGGTGCCACTGACTTGTGGGCTTTG
1040067 -AAAGGGTGCCACTGACTTGTGGGCTTTG
1 AAAAGGGTGCCACTGACTTGTGGGCTTTG
1040095 -AAAGGGT
1 AAAAGGGT
1040102 TTGAACGTTC
Statistics
Matches: 955, Mismatches: 96, Indels: 71
0.85 0.09 0.06
Matches are distributed among these distances:
27 3 0.00
28 339 0.35
29 349 0.37
30 114 0.12
31 75 0.08
32 75 0.08
ACGTcount: A:0.22, C:0.17, G:0.32, T:0.29
Consensus pattern (29 bp):
AAAAGGGTGCCACTGACTTGTGGGCTTTG
Found at i:1041335 original size:1 final size:1
Alignment explanation
Indices: 1041331--1041384 Score: 54
Period size: 1 Copynumber: 54.0 Consensus size: 1
1041321 TTTTTTGCTA
* * * * * *
1041331 TTTTTTCTTGTTTTTTTTTGTTTTTTTTGTTTTGTTTTTTTTTTGTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1041385 GTGTAAAGGA
Statistics
Matches: 41, Mismatches: 12, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
1 41 1.00
ACGTcount: A:0.00, C:0.02, G:0.09, T:0.89
Consensus pattern (1 bp):
T
Found at i:1041344 original size:10 final size:9
Alignment explanation
Indices: 1041331--1041383 Score: 65
Period size: 9 Copynumber: 5.9 Consensus size: 9
1041321 TTTTTTGCTA
1041331 TTTTTTCTTG
1 TTTTTT-TTG
1041341 TTTTTTTTTG
1 -TTTTTTTTG
1041351 TTTTTTTTG
1 TTTTTTTTG
*
1041360 -TTTTGTT-
1 TTTTTTTTG
1041367 TTTTTTTTG
1 TTTTTTTTG
1041376 TTTTTTTT
1 TTTTTTTT
1041384 TGTGTAAAGG
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
8 12 0.32
9 17 0.45
10 3 0.08
11 6 0.16
ACGTcount: A:0.00, C:0.02, G:0.09, T:0.89
Consensus pattern (9 bp):
TTTTTTTTG
Found at i:1041345 original size:11 final size:10
Alignment explanation
Indices: 1041320--1041384 Score: 64
Period size: 9 Copynumber: 6.4 Consensus size: 10
1041310 GACCCTTCTA
1041320 TTTTTTTGCTAT
1 TTTTTTTG-T-T
1041332 TTTTTCTTGTT
1 TTTTT-TTGTT
1041343 TTTTTTTG-T
1 TTTTTTTGTT
1041352 TTTTTTTGTT
1 TTTTTTTGTT
1041362 TTGTTTTT-TT
1 TT-TTTTTGTT
*
1041372 TTTGTTT-TT
1 TTTTTTTGTT
1041381 TTTT
1 TTTT
1041385 GTGTAAAGGA
Statistics
Matches: 48, Mismatches: 2, Indels: 9
0.81 0.03 0.15
Matches are distributed among these distances:
9 18 0.38
10 10 0.21
11 11 0.23
12 6 0.12
13 3 0.06
ACGTcount: A:0.02, C:0.03, G:0.09, T:0.86
Consensus pattern (10 bp):
TTTTTTTGTT
Found at i:1041370 original size:16 final size:15
Alignment explanation
Indices: 1041331--1041384 Score: 65
Period size: 16 Copynumber: 3.6 Consensus size: 15
1041321 TTTTTTGCTA
* *
1041331 TTTTTTCTTGTTTT-
1 TTTTTTTTTTTTTTG
*
1041345 TTTTTGTTTTTTTTG
1 TTTTTTTTTTTTTTG
1041360 TTTTGTTTTTTTTTTG
1 TTTT-TTTTTTTTTTG
1041376 TTTTTTTTT
1 TTTTTTTTT
1041385 GTGTAAAGGA
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
14 11 0.32
15 9 0.26
16 14 0.41
ACGTcount: A:0.00, C:0.02, G:0.09, T:0.89
Consensus pattern (15 bp):
TTTTTTTTTTTTTTG
Found at i:1041386 original size:10 final size:10
Alignment explanation
Indices: 1041320--1041384 Score: 64
Period size: 10 Copynumber: 6.3 Consensus size: 10
1041310 GACCCTTCTA
1041320 TTTTTTTGCTAT
1 TTTTTTTG-T-T
1041332 TTTTTCTTGTT
1 TTTTT-TTGTT
1041343 TTTTTTTG-T
1 TTTTTTTGTT
1041352 TTTTTTTGTT
1 TTTTTTTGTT
1041362 TTGTTTTT-TT
1 TT-TTTTTGTT
1041372 TTTGTTTT-TT
1 TTT-TTTTGTT
1041382 TTT
1 TTT
1041385 GTGTAAAGGA
Statistics
Matches: 49, Mismatches: 0, Indels: 10
0.83 0.00 0.17
Matches are distributed among these distances:
9 10 0.20
10 19 0.39
11 11 0.22
12 6 0.12
13 3 0.06
ACGTcount: A:0.02, C:0.03, G:0.09, T:0.86
Consensus pattern (10 bp):
TTTTTTTGTT
Found at i:1055434 original size:40 final size:39
Alignment explanation
Indices: 1055386--1055463 Score: 111
Period size: 40 Copynumber: 2.0 Consensus size: 39
1055376 GGTAAAAAGA
* *
1055386 CATAATGTATCGATACATTGAAGAATATATCGATACATT
1 CATAATGTATCGATACATTGAAAAATACATCGATACATT
* *
1055425 CATACATGTATCGATATATTGAAAAATGCATCGATACAT
1 CATA-ATGTATCGATACATTGAAAAATACATCGATACAT
1055464 CTCGATAAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
39 4 0.12
40 30 0.88
ACGTcount: A:0.41, C:0.14, G:0.13, T:0.32
Consensus pattern (39 bp):
CATAATGTATCGATACATTGAAAAATACATCGATACATT
Found at i:1055436 original size:20 final size:20
Alignment explanation
Indices: 1055389--1055463 Score: 71
Period size: 20 Copynumber: 3.8 Consensus size: 20
1055379 AAAAAGACAT
*
1055389 AATGTATCGATACATTGA-A
1 AATGTATCGATACATTCATA
*
1055408 GAATATATCGATACATTCATA
1 -AATGTATCGATACATTCATA
* * * *
1055429 CATGTATCGATATATTGAAA
1 AATGTATCGATACATTCATA
*
1055449 AATGCATCGATACAT
1 AATGTATCGATACAT
1055464 CTCGATAAAA
Statistics
Matches: 44, Mismatches: 10, Indels: 2
0.79 0.18 0.04
Matches are distributed among these distances:
20 43 0.98
21 1 0.02
ACGTcount: A:0.41, C:0.13, G:0.13, T:0.32
Consensus pattern (20 bp):
AATGTATCGATACATTCATA
Found at i:1058262 original size:30 final size:28
Alignment explanation
Indices: 1058228--1058283 Score: 85
Period size: 28 Copynumber: 1.9 Consensus size: 28
1058218 TCGATGATTA
1058228 GAAAATAAATCGAGATTGGAGTATCCCCTC
1 GAAAAT-AA-CGAGATTGGAGTATCCCCTC
*
1058258 GAAAATAACGGGATTGGAGTATCCCC
1 GAAAATAACGAGATTGGAGTATCCCC
1058284 AATTATGAGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
28 17 0.68
29 2 0.08
30 6 0.24
ACGTcount: A:0.36, C:0.20, G:0.23, T:0.21
Consensus pattern (28 bp):
GAAAATAACGAGATTGGAGTATCCCCTC
Found at i:1058268 original size:78 final size:79
Alignment explanation
Indices: 1058165--1058365 Score: 217
Period size: 78 Copynumber: 2.6 Consensus size: 79
1058155 AATAGCGGGG
* * * * * * *
1058165 TTGGAGTGTTCCCTTGAAAACAACGGGGCTGGAGTATCCCCGGTTGTGAGAAATCGATGA-TTAG
1 TTGGAGTATCCCCTTGAAAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATCAAT-ATTTAG
*
1058229 AAAATAAA-TCGAGA
65 AAAATAAAGCCGAGA
* * * * *
1058243 TTGGAGTATCCCCTCGAAAATAACGGGATTGGAGTATCCCCAATTATGAGAAATCAATATTTTGG
1 TTGGAGTATCCCCTTGAAAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATCAATATTTAGA
* * *
1058308 GAATAAAGCCGGGG
66 AAATAAAGCCGAGA
* *
1058322 TTGGAGTATCCCCTTGGAAGTAACGGGGTTGGAGTATCCCCGAT
1 TTGGAGTATCCCCTTGAAAATAACGGGGTTGGAGTATCCCCGAT
1058366 GAAATAACGA
Statistics
Matches: 100, Mismatches: 21, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
77 1 0.01
78 57 0.57
79 42 0.42
ACGTcount: A:0.30, C:0.17, G:0.28, T:0.25
Consensus pattern (79 bp):
TTGGAGTATCCCCTTGAAAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATCAATATTTAGA
AAATAAAGCCGAGA
Found at i:1058357 original size:28 final size:28
Alignment explanation
Indices: 1058317--1058393 Score: 102
Period size: 28 Copynumber: 2.8 Consensus size: 28
1058307 GGAATAAAGC
* *
1058317 CGGGGTTGGAGTATCCCC-TTGGAAGTAA
1 CGGGGTTGGAGTATCCCCGAT-GAAATAA
1058345 CGGGGTTGGAGTATCCCCGATGAAATAA
1 CGGGGTTGGAGTATCCCCGATGAAATAA
* *
1058373 CGAGGTTGGAGTATCCTCGAT
1 CGGGGTTGGAGTATCCCCGAT
1058394 TATGAAAAAT
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
28 43 0.98
29 1 0.02
ACGTcount: A:0.23, C:0.18, G:0.34, T:0.25
Consensus pattern (28 bp):
CGGGGTTGGAGTATCCCCGATGAAATAA
Found at i:1058492 original size:53 final size:52
Alignment explanation
Indices: 1058412--1058554 Score: 137
Period size: 52 Copynumber: 2.7 Consensus size: 52
1058402 ATTGGTATTT
* * * * * *
1058412 TTTTGGAAATAAAATCAGAGTTGGAGTATCCCCGATTAAAGGGAAAATTGGTG
1 TTTTGAAAATAAAACCGGGGTT-GAGTATCCCCGATTAAAGGAAAAATTAGTG
* **
1058465 TTTTGAAAATAAAACCGGGGTTAGAGTATCCTCGATT-GTGGAAAAATTAGTG
1 TTTTGAAAATAAAACCGGGGTT-GAGTATCCCCGATTAAAGGAAAAATTAGTG
* *
1058517 TTTT-AGCAATAAAACCGGGATTGAAGTATCCCCGATTA
1 TTTTGA-AAATAAAACCGGGGTTG-AGTATCCCCGATTA
1058555 TGAAAAATCA
Statistics
Matches: 74, Mismatches: 13, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
51 2 0.03
52 41 0.55
53 31 0.42
ACGTcount: A:0.35, C:0.12, G:0.24, T:0.29
Consensus pattern (52 bp):
TTTTGAAAATAAAACCGGGGTTGAGTATCCCCGATTAAAGGAAAAATTAGTG
Found at i:1058531 original size:52 final size:51
Alignment explanation
Indices: 1058382--1058562 Score: 134
Period size: 52 Copynumber: 3.4 Consensus size: 51
1058372 ACGAGGTTGG
* * * * * * *
1058382 AGTATCCTCGATTATGAAAAATTGGTATTTTTTTGGAAATAAAATC-AGAGTTGG
1 AGTATCCCCGATTATGAAAAA-T--TAGTGTTTTGAAAATAAAACCGGGA-TTGA
* * * *
1058436 AGTATCCCCGATTAAAGGGAAAATTGGTGTTTTGAAAATAAAACCGGGGTT-A
1 AGTATCCCCGATT--ATGAAAAATTAGTGTTTTGAAAATAAAACCGGGATTGA
* * *
1058488 GAGTATCCTCGATTGTGGAAAAATTAGTGTTTT-AGCAATAAAACCGGGATTGA
1 -AGTATCCCCGATTAT-GAAAAATTAGTGTTTTGA-AAATAAAACCGGGATTGA
1058541 AGTATCCCCGATTATGAAAAAT
1 AGTATCCCCGATTATGAAAAAT
1058563 CAATATTTTG
Statistics
Matches: 100, Mismatches: 20, Indels: 17
0.73 0.15 0.12
Matches are distributed among these distances:
51 8 0.08
52 41 0.41
53 31 0.31
54 13 0.13
55 1 0.01
56 6 0.06
ACGTcount: A:0.36, C:0.11, G:0.22, T:0.31
Consensus pattern (51 bp):
AGTATCCCCGATTATGAAAAATTAGTGTTTTGAAAATAAAACCGGGATTGA
Found at i:1058646 original size:27 final size:26
Alignment explanation
Indices: 1058583--1058657 Score: 98
Period size: 27 Copynumber: 2.8 Consensus size: 26
1058573 GAGATAAAGT
1058583 CGGGGTTGGAGTATCCCTTCGAAAATAA
1 CGGGGTTGGAGTATCCC--CGAAAATAA
*
1058611 CGGGGTTGGAGTATCCCC-AATGATTAA
1 CGGGGTTGGAGTATCCCCGAA--AATAA
1058638 CGGGGTTGGAGTATCCCCGA
1 CGGGGTTGGAGTATCCCCGA
1058658 TTGTGAAAAT
Statistics
Matches: 43, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
25 2 0.05
26 1 0.02
27 22 0.51
28 18 0.42
ACGTcount: A:0.24, C:0.20, G:0.32, T:0.24
Consensus pattern (26 bp):
CGGGGTTGGAGTATCCCCGAAAATAA
Found at i:1058750 original size:51 final size:51
Alignment explanation
Indices: 1058642--1058763 Score: 158
Period size: 51 Copynumber: 2.4 Consensus size: 51
1058632 GATTAACGGG
* * *
1058642 GTTGGAGTATCCCCGATTGTGAAAATTTGGTGTTTTTTTGAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTATGAAAATTTAGTG--TTCTTGAAATAAAATCGGA
1058695 GTTGGAGTATCCCCGATTATAGAAAA-TTAGTG-TCTTGAAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTAT-GAAAATTTAGTGTTCTTG-AAATAAAATCGGA
*
1058746 GTTGGAATATCCCCGATT
1 GTTGGAGTATCCCCGATT
1058764 GTGGAGAATT
Statistics
Matches: 63, Mismatches: 4, Indels: 6
0.86 0.05 0.08
Matches are distributed among these distances:
50 4 0.06
51 30 0.48
53 24 0.38
54 5 0.08
ACGTcount: A:0.31, C:0.12, G:0.23, T:0.34
Consensus pattern (51 bp):
GTTGGAGTATCCCCGATTATGAAAATTTAGTGTTCTTGAAATAAAATCGGA
Found at i:1061142 original size:13 final size:13
Alignment explanation
Indices: 1061124--1061149 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1061114 ACAAAGATCC
1061124 ATGTATCGATACA
1 ATGTATCGATACA
1061137 ATGTATCGATACA
1 ATGTATCGATACA
1061150 CAGAAAAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1061145 original size:33 final size:33
Alignment explanation
Indices: 1061103--1061169 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
1061093 AAAATTTCCA
***
1061103 AATGTATCGATACAAAGATCCATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
*
1061136 AATGTATCGATACACAGAAAAATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
1061169 A
1 A
1061170 TTTCCTTGGC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.43, C:0.16, G:0.15, T:0.25
Consensus pattern (33 bp):
AATGTATCGATACAAAGAAAAATGTATCGATAC
Found at i:1061213 original size:19 final size:18
Alignment explanation
Indices: 1061189--1061256 Score: 83
Period size: 19 Copynumber: 3.9 Consensus size: 18
1061179 CAGTAGCTAA
1061189 TTATGTATCGATACAATAC
1 TTATGTATCGATACAA-AC
1061208 TTATGTATCGATAC--A-
1 TTATGTATCGATACAAAC
1061223 -T-TGTATCGATACAAAAC
1 TTATGTATCGATAC-AAAC
1061240 TTATGTATCGATACAAA
1 TTATGTATCGATACAAA
1061257 TTGTTGAATT
Statistics
Matches: 43, Mismatches: 0, Indels: 13
0.77 0.00 0.23
Matches are distributed among these distances:
13 11 0.26
14 1 0.02
16 2 0.05
18 4 0.09
19 25 0.58
ACGTcount: A:0.38, C:0.15, G:0.12, T:0.35
Consensus pattern (18 bp):
TTATGTATCGATACAAAC
Found at i:1061229 original size:13 final size:13
Alignment explanation
Indices: 1061211--1061235 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1061201 ACAATACTTA
1061211 TGTATCGATACAT
1 TGTATCGATACAT
1061224 TGTATCGATACA
1 TGTATCGATACA
1061236 AAACTTATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1061233 original size:32 final size:32
Alignment explanation
Indices: 1061192--1061254 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
1061182 TAGCTAATTA
*
1061192 TGTATCGATACAATACTTATGTATCGATACAT
1 TGTATCGATACAAAACTTATGTATCGATACAT
1061224 TGTATCGATACAAAACTTATGTATCGATACA
1 TGTATCGATACAAAACTTATGTATCGATACA
1061255 AATTGTTGAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.37, C:0.16, G:0.13, T:0.35
Consensus pattern (32 bp):
TGTATCGATACAAAACTTATGTATCGATACAT
Found at i:1061336 original size:21 final size:22
Alignment explanation
Indices: 1061312--1061368 Score: 100
Period size: 21 Copynumber: 2.7 Consensus size: 22
1061302 CATTTGTAGG
1061312 ATGTATCGATACATTCC-ACAA
1 ATGTATCGATACATTCCTACAA
1061333 ATGTATCGATACA-TCCTACAA
1 ATGTATCGATACATTCCTACAA
1061354 ATGTATCGATACATT
1 ATGTATCGATACATT
1061369 TGGATAATTT
Statistics
Matches: 34, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
20 3 0.09
21 30 0.88
22 1 0.03
ACGTcount: A:0.37, C:0.21, G:0.11, T:0.32
Consensus pattern (22 bp):
ATGTATCGATACATTCCTACAA
Found at i:1068963 original size:22 final size:20
Alignment explanation
Indices: 1068921--1068990 Score: 79
Period size: 20 Copynumber: 3.4 Consensus size: 20
1068911 GAAATATATT
* *
1068921 GATACATTACTAAATGTATC
1 GATACATTTCTAATTGTATC
1068941 GATACATGCTTAC-AATTGTATC
1 GATACAT--TT-CTAATTGTATC
*
1068963 GATACATTTCTCATTGTATC
1 GATACATTTCTAATTGTATC
1068983 GATACATT
1 GATACATT
1068991 CTGGGTTTTT
Statistics
Matches: 43, Mismatches: 3, Indels: 8
0.80 0.06 0.15
Matches are distributed among these distances:
19 1 0.02
20 25 0.58
22 16 0.37
23 1 0.02
ACGTcount: A:0.33, C:0.17, G:0.11, T:0.39
Consensus pattern (20 bp):
GATACATTTCTAATTGTATC
Found at i:1071927 original size:22 final size:23
Alignment explanation
Indices: 1071899--1071948 Score: 77
Period size: 22 Copynumber: 2.3 Consensus size: 23
1071889 CCTTTTTACG
*
1071899 CGTAACCAA-CTCCTGAACCCAA
1 CGTAACCAACCCCCTGAACCCAA
1071921 CGTAACCAACCCCCTGAACCCAA
1 CGTAACCAACCCCCTGAACCCAA
1071944 C-TAAC
1 CGTAAC
1071949 GAATCTCTCA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
22 13 0.50
23 13 0.50
ACGTcount: A:0.36, C:0.44, G:0.08, T:0.12
Consensus pattern (23 bp):
CGTAACCAACCCCCTGAACCCAA
Found at i:1072448 original size:21 final size:21
Alignment explanation
Indices: 1072423--1072462 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
1072413 ATTAAAAAAT
1072423 TATTTTAT-ATTAATATTTATA
1 TATTTTATAATTAA-ATTTATA
1072444 TATTTTATAATTAAATTTA
1 TATTTTATAATTAAATTTA
1072463 AATAAAAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (21 bp):
TATTTTATAATTAAATTTATA
Found at i:1074372 original size:6 final size:7
Alignment explanation
Indices: 1074304--1074377 Score: 53
Period size: 7 Copynumber: 10.4 Consensus size: 7
1074294 TAAATTTAGA
1074304 TTTAAA-
1 TTTAAAT
1074310 TTT-AAT
1 TTTAAAT
*
1074316 TTTGAAT
1 TTTAAAT
1074323 TTTAAAAT
1 TTT-AAAT
*
1074331 TTTATAT
1 TTTAAAT
*
1074338 TTGAAAT
1 TTTAAAT
* *
1074345 TTATGATT
1 TT-TAAAT
1074353 TTTAAAT
1 TTTAAAT
1074360 TTATAAAT
1 TT-TAAAT
*
1074368 TTAAAAT
1 TTTAAAT
1074375 TTT
1 TTT
1074378 TTGTTTGGAT
Statistics
Matches: 52, Mismatches: 11, Indels: 9
0.72 0.15 0.12
Matches are distributed among these distances:
5 2 0.04
6 6 0.12
7 27 0.52
8 17 0.33
ACGTcount: A:0.39, C:0.00, G:0.04, T:0.57
Consensus pattern (7 bp):
TTTAAAT
Found at i:1075532 original size:2 final size:2
Alignment explanation
Indices: 1075525--1075555 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
1075515 TCTTTACCTT
1075525 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1075556 GTTACTAATA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:1076226 original size:31 final size:34
Alignment explanation
Indices: 1076191--1076252 Score: 94
Period size: 33 Copynumber: 1.9 Consensus size: 34
1076181 TATGATACAA
1076191 ATAAAAAA-A-TTAAAATATGACAT-AATATAAT
1 ATAAAAAATATTTAAAATATGACATGAATATAAT
*
1076222 ATAAAAAATATTTAAAATATGATATGAATAT
1 ATAAAAAATATTTAAAATATGACATGAATAT
1076253 GTTAAAATTT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
31 8 0.30
32 1 0.04
33 13 0.48
34 5 0.19
ACGTcount: A:0.61, C:0.02, G:0.05, T:0.32
Consensus pattern (34 bp):
ATAAAAAATATTTAAAATATGACATGAATATAAT
Found at i:1076297 original size:32 final size:32
Alignment explanation
Indices: 1076251--1076329 Score: 122
Period size: 32 Copynumber: 2.5 Consensus size: 32
1076241 TGATATGAAT
**
1076251 ATGTTAAAATTTATATAGTATAAATTATTAAC
1 ATGTTAAAATTTATATAACATAAATTATTAAC
* *
1076283 ATGTCAAAATTTATATAACATAAATTATTAAT
1 ATGTTAAAATTTATATAACATAAATTATTAAC
1076315 ATGTTAAAATTTATA
1 ATGTTAAAATTTATA
1076330 AAAATATATA
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
32 42 1.00
ACGTcount: A:0.48, C:0.04, G:0.05, T:0.43
Consensus pattern (32 bp):
ATGTTAAAATTTATATAACATAAATTATTAAC
Found at i:1076362 original size:20 final size:20
Alignment explanation
Indices: 1076339--1076388 Score: 91
Period size: 20 Copynumber: 2.5 Consensus size: 20
1076329 AAAAATATAT
*
1076339 AATATTTTAAACATAATTAA
1 AATATTTTAAACACAATTAA
1076359 AATATTTTAAACACAATTAA
1 AATATTTTAAACACAATTAA
1076379 AATATTTTAA
1 AATATTTTAA
1076389 CTTATAACAT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.54, C:0.06, G:0.00, T:0.40
Consensus pattern (20 bp):
AATATTTTAAACACAATTAA
Found at i:1077357 original size:2 final size:2
Alignment explanation
Indices: 1077350--1077386 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
1077340 CCTTATTTAC
*
1077350 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT GT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1077387 ATCAGTTGTG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (2 bp):
AT
Found at i:1078636 original size:25 final size:25
Alignment explanation
Indices: 1078573--1078698 Score: 66
Period size: 23 Copynumber: 5.0 Consensus size: 25
1078563 TAATTTATAA
*
1078573 AATTTTTATATGAATATAAATAATAT
1 AATTTATATAT-AATATAAATAATAT
* *
1078599 TATTTAT-TA-AATATATAA-CATAT
1 AATTTATATATAATATA-AATAATAT
* *
1078622 AATTTATATATAATACATATAATTTAT
1 AATTTATATATAATATAAATAA--TAT
* * *
1078649 AAAATTATTTATATATAAAAATAATAT
1 -AATTTATATATA-ATATAAATAATAT
* *
1078676 TATTTATA-A-AAT-TAAAAAATAT
1 AATTTATATATAATATAAATAATAT
1078698 A
1 A
1078699 TAACCTATAT
Statistics
Matches: 75, Mismatches: 17, Indels: 20
0.67 0.15 0.18
Matches are distributed among these distances:
22 8 0.11
23 18 0.24
24 6 0.08
25 9 0.12
26 10 0.13
27 6 0.08
28 10 0.13
29 8 0.11
ACGTcount: A:0.53, C:0.02, G:0.01, T:0.44
Consensus pattern (25 bp):
AATTTATATATAATATAAATAATAT
Found at i:1078639 original size:20 final size:20
Alignment explanation
Indices: 1078586--1078649 Score: 69
Period size: 20 Copynumber: 3.1 Consensus size: 20
1078576 TTTTATATGA
*
1078586 ATATA-AATA-ATATTATTT
1 ATATATAATACATATAATTT
*
1078604 ATTAAATATATAACATATAATTT
1 A-TATATA-AT-ACATATAATTT
1078627 ATATATAATACATATAATTT
1 ATATATAATACATATAATTT
1078647 ATA
1 ATA
1078650 AAATTATTTA
Statistics
Matches: 38, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
18 1 0.03
19 3 0.08
20 15 0.39
21 4 0.11
22 6 0.16
23 9 0.24
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (20 bp):
ATATATAATACATATAATTT
Found at i:1078663 original size:32 final size:32
Alignment explanation
Indices: 1078623--1078689 Score: 91
Period size: 34 Copynumber: 2.0 Consensus size: 32
1078613 ATAACATATA
1078623 ATTTATATAT-AATACATATAATTTATAAAATT
1 ATTTATATATAAATA-ATATAATTTATAAAATT
*
1078655 ATTTATATATAAAAATAATATTATTTATAAAATT
1 ATTTATATAT--AAATAATATAATTTATAAAATT
1078689 A
1 A
1078690 AAAAATATAT
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
32 10 0.32
34 17 0.55
35 4 0.13
ACGTcount: A:0.52, C:0.01, G:0.00, T:0.46
Consensus pattern (32 bp):
ATTTATATATAAATAATATAATTTATAAAATT
Found at i:1078683 original size:18 final size:18
Alignment explanation
Indices: 1078590--1078686 Score: 72
Period size: 18 Copynumber: 5.1 Consensus size: 18
1078580 ATATGAATAT
1078590 AAATAATATTATTTATTAA
1 AAATAATATTATTTA-TAA
*
1078609 ATATATAACATATAATTTATATA
1 A-A-AT-A-ATATTATTTATA-A
* *
1078632 TAATACATATAATTTAT-A
1 AAATA-ATATTATTTATAA
* *
1078650 AAATTAT-TTATATATAA
1 AAATAATATTATTTATAA
1078667 AAATAATATTATTTATAA
1 AAATAATATTATTTATAA
1078685 AA
1 AA
1078687 TTAAAAAATA
Statistics
Matches: 63, Mismatches: 8, Indels: 15
0.73 0.09 0.17
Matches are distributed among these distances:
16 6 0.10
17 9 0.14
18 15 0.24
19 1 0.02
20 14 0.22
21 4 0.06
22 4 0.06
23 10 0.16
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (18 bp):
AAATAATATTATTTATAA
Found at i:1078725 original size:18 final size:18
Alignment explanation
Indices: 1078603--1078740 Score: 58
Period size: 18 Copynumber: 7.9 Consensus size: 18
1078593 TAATATTATT
* *
1078603 TATTAAATATATAACATA
1 TATTATATATATAAAATA
* *
1078621 TAATT-TATATATAATACA
1 T-ATTATATATATAAAATA
*
1078639 TA-TA-ATTTATAAAAT-
1 TATTATATATATAAAATA
1078654 TATT-TATATATAAAAATAA
1 TATTATATATAT-AAAAT-A
1078673 TATTAT-T-TATAAAAT-
1 TATTATATATATAAAATA
** * **
1078688 TAAAAAATATATAACCTA
1 TATTATATATATAAAATA
* * * *
1078706 TATAAAATATATTATATA
1 TATTATATATATAAAATA
*
1078724 TATTATTTATATAAAAT
1 TATTATATATATAAAAT
1078741 TAAAAAAAAT
Statistics
Matches: 88, Mismatches: 21, Indels: 22
0.67 0.16 0.17
Matches are distributed among these distances:
15 5 0.06
16 16 0.18
17 17 0.19
18 41 0.47
19 8 0.09
20 1 0.01
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.43
Consensus pattern (18 bp):
TATTATATATATAAAATA
Found at i:1078951 original size:15 final size:16
Alignment explanation
Indices: 1078928--1078960 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
1078918 AAAGCTTCAC
*
1078928 ATTTTTTAATT-TTTT
1 ATTTATTAATTATTTT
1078943 ATTTATTAATTATTTT
1 ATTTATTAATTATTTT
1078959 AT
1 AT
1078961 GAATTCTTTC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 10 0.62
16 6 0.38
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (16 bp):
ATTTATTAATTATTTT
Found at i:1080127 original size:20 final size:20
Alignment explanation
Indices: 1080095--1080143 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
1080085 TCCCCTTTCT
1080095 TTATATAT-A-ACATATAAC
1 TTATATATAATACATATAAC
* * *
1080113 TTATATATAATACATGTTAT
1 TTATATATAATACATATAAC
1080133 TTATATATAAT
1 TTATATATAAT
1080144 TTATAAAGTT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
18 8 0.31
19 1 0.04
20 17 0.65
ACGTcount: A:0.45, C:0.06, G:0.02, T:0.47
Consensus pattern (20 bp):
TTATATATAATACATATAAC
Found at i:1081614 original size:16 final size:17
Alignment explanation
Indices: 1081583--1081634 Score: 54
Period size: 16 Copynumber: 3.2 Consensus size: 17
1081573 TCCCTTTTTT
* *
1081583 TTATATAATTTATAAAA
1 TTATATTATATATAAAA
1081600 TTAT-TTATATAT-AAA
1 TTATATTATATATAAAA
* *
1081615 TAATATTATTTATAAAA
1 TTATATTATATATAAAA
1081632 TTA
1 TTA
1081635 AAGAGCGTGA
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
15 6 0.21
16 13 0.46
17 9 0.32
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (17 bp):
TTATATTATATATAAAA
Found at i:1081725 original size:23 final size:23
Alignment explanation
Indices: 1081699--1081751 Score: 54
Period size: 23 Copynumber: 2.3 Consensus size: 23
1081689 TGTATAATTT
* * *
1081699 ATATAATTAATTATATTAAAATA
1 ATATAATTAATAAAATTAAAAAA
* *
1081722 ATATTATTTATAAAATTAAAAAA
1 ATATAATTAATAAAATTAAAAAA
1081745 AT-TAATT
1 ATATAATT
1081752 TGAAGAAAAA
Statistics
Matches: 24, Mismatches: 6, Indels: 1
0.77 0.19 0.03
Matches are distributed among these distances:
22 4 0.17
23 20 0.83
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (23 bp):
ATATAATTAATAAAATTAAAAAA
Found at i:1085911 original size:20 final size:20
Alignment explanation
Indices: 1085882--1085951 Score: 99
Period size: 20 Copynumber: 3.6 Consensus size: 20
1085872 TTTTTACCTT
1085882 AATGTATCGATACATTGTAG
1 AATGTATCGATACATTGTAG
*
1085902 AATATATCGATACA-TGTAG
1 AATGTATCGATACATTGTAG
* *
1085921 -ATGTATCGATACATTGAAT
1 AATGTATCGATACATTGTAG
1085940 AATGTATCGATA
1 AATGTATCGATA
1085952 TATCTAGTTA
Statistics
Matches: 44, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
18 12 0.27
19 8 0.18
20 24 0.55
ACGTcount: A:0.39, C:0.10, G:0.17, T:0.34
Consensus pattern (20 bp):
AATGTATCGATACATTGTAG
Found at i:1093299 original size:11 final size:11
Alignment explanation
Indices: 1093283--1093324 Score: 66
Period size: 11 Copynumber: 3.7 Consensus size: 11
1093273 ACCTAATCCT
*
1093283 AAAAAAAGAAA
1 AAAAAAACAAA
1093294 AAAAAAACAAA
1 AAAAAAACAAA
1093305 AAAAAAACCAAA
1 AAAAAAA-CAAA
1093317 AAAAAAAC
1 AAAAAAAC
1093325 CTTTTCACCT
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
11 18 0.62
12 11 0.38
ACGTcount: A:0.88, C:0.10, G:0.02, T:0.00
Consensus pattern (11 bp):
AAAAAAACAAA
Found at i:1093324 original size:12 final size:12
Alignment explanation
Indices: 1093291--1093325 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
1093281 CTAAAAAAAG
1093291 AAAAAAAAAA-C
1 AAAAAAAAAACC
1093302 AAAAAAAAAACC
1 AAAAAAAAAACC
1093314 AAAAAAAAAACC
1 AAAAAAAAAACC
1093326 TTTTCACCTT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
11 10 0.43
12 13 0.57
ACGTcount: A:0.86, C:0.14, G:0.00, T:0.00
Consensus pattern (12 bp):
AAAAAAAAAACC
Found at i:1095001 original size:28 final size:27
Alignment explanation
Indices: 1094339--1094991 Score: 991
Period size: 28 Copynumber: 23.6 Consensus size: 27
1094329 ACTATGACCT
*
1094339 CTTTAAAGTCCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
* *
1094366 CTTTTAAGTCCACAATTTCGTGGCATCC
1 CTTTTAAGTCCACAACTCCGTGGCA-CC
1094394 CTTTTAAGTCCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
*
1094421 CTTTTAAGTCCACAATTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
1094448 CTTTTAAGTCCACAACTCCGTGGCATCC
1 CTTTTAAGTCCACAACTCCGTGGCA-CC
1094476 CTTTTAAGTCCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
1094503 CTTTTAAGTCCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
1094530 CTTTTAAGTCCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
*
1094557 CTTTTGAGTCCACAACTCCGTGGCATCC
1 CTTTTAAGTCCACAACTCCGTGGCA-CC
1094585 CTTTTAAGTCCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
1094612 CTTTTAAAGTCCACAACTCCGTGGCACC
1 CTTTT-AAGTCCACAACTCCGTGGCACC
* *
1094640 CTTTTTGAGTCCACAACTACGTGGCATCC
1 C-TTTTAAGTCCACAACTCCGTGGCA-CC
* *
1094669 CTTTTAAGTACACAACTTCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
*
1094696 CTTTTAAAGTCCACAACTCTGTGGCACC
1 CTTTT-AAGTCCACAACTCCGTGGCACC
*
1094724 CTTTTTGAGTCCACAACTCCGTGGCATCC
1 C-TTTTAAGTCCACAACTCCGTGGCA-CC
*
1094753 CTTTTAAGTCCACAACTCCGTAGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
1094780 CTTTTAAAGTCCACAACTCCGTGGCACC
1 CTTTT-AAGTCCACAACTCCGTGGCACC
*
1094808 CTTTTTGAGTCCACAACTCCGTGGCATCC
1 C-TTTTAAGTCCACAACTCCGTGGCA-CC
1094837 CTTTTAAGTCCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
1094864 CTTTTAAAGTCCACAACTCCGTGGCACC
1 CTTTT-AAGTCCACAACTCCGTGGCACC
* *
1094892 CTTTTTGAGTCCACAACTCCATGGCATCC
1 C-TTTTAAGTCCACAACTCCGTGGCA-CC
*
1094921 CTTTTAAATCCACAACTCCGTGGCATCC
1 CTTTTAAGTCCACAACTCCGTGGCA-CC
* *
1094949 CTTTTAAGTTCACAACTTCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
1094976 CTTTTTAAGTCCACAA
1 C-TTTTAAGTCCACAA
1094992 GGCGGTGGCA
Statistics
Matches: 577, Mismatches: 33, Indels: 31
0.90 0.05 0.05
Matches are distributed among these distances:
27 185 0.32
28 364 0.63
29 28 0.05
ACGTcount: A:0.23, C:0.34, G:0.15, T:0.28
Consensus pattern (27 bp):
CTTTTAAGTCCACAACTCCGTGGCACC
Found at i:1095020 original size:30 final size:28
Alignment explanation
Indices: 1094968--1095883 Score: 392
Period size: 32 Copynumber: 29.8 Consensus size: 28
1094958 TCACAACTTC
* ** * * *
1094968 GTGGCACCCTTTTTAAGTCCACAAGGCG
1 GTGGCATCCTTTCAAAGCCCACAAGTCA
* *
1094996 GTGGCATTCCCTTCTAAAGCCCACAAGTTA
1 GTGGCA-TCCTTTC-AAAGCCCACAAGTCA
*
1095026 GTGGCA-CCTTTTTCAAAGCCCACAAGTTA
1 GTGGCATCC--TTTCAAAGCCCACAAGTCA
*
1095055 GTGGCATCTTTTCAAAGCCCACAAGTCA
1 GTGGCATCCTTTCAAAGCCCACAAGTCA
* **
1095083 GTGGCATCTTTTCAAAGTCCACACAAGTTG
1 GTGGCATCCTTTCAAAG-CC-CACAAGTCA
*
1095113 GTGGCATCCTTTCAAAGCCCACAAGTCG
1 GTGGCATCCTTTCAAAGCCCACAAGTCA
* *
1095141 GTGGCAACCCTTTTCAAAGCCCACAACTCA
1 GTGGC-ATCC-TTTCAAAGCCCACAAGTCA
*
1095171 GTGGCA-CCATTTCAAAGCCCACACAAGTCG
1 GTGGCATCC-TTTCAAAG-CC-CACAAGTCA
* * *
1095201 GTGGTA-CTATTTCAAAGCCCACACAAGTCG
1 GTGGCATC-CTTTCAAAG-CC-CACAAGTCA
* * *
1095231 GTGGCAACTCATTTCAAATCCCACACAAGTCG
1 GTGGC-A-TCCTTTCAAA-GCC-CACAAGTCA
* *
1095263 GTGGCAACCCTTTTCAAAGCCCACACAAGTCG
1 GTGGC-ATCC-TTTCAAAG-CC-CACAAGTCA
*
1095295 GTGGCAACCCTTTTCAAAGCCCACAAGTCA
1 GTGGC-ATCC-TTTCAAAGCCCACAAGTCA
1095325 GTGGCA-CCATTTCAAAGCCCACACAAGTCA
1 GTGGCATCC-TTTCAAAG-CC-CACAAGTCA
* * *
1095355 GTGACA-CTATTTCAAAGCCCACGTAAGTCG
1 GTGGCATC-CTTTCAAAGCCCAC--AAGTCA
* *
1095385 GTGGCAACCCATTTCAAAGCCCACACAAGTCG
1 GTGGC-ATCC-TTTCAAAG-CC-CACAAGTCA
* * **
1095417 GTGGCAACCCATTTTAAAGCCCACACAAGTTG
1 GTGGC-ATCC-TTTCAAAG-CC-CACAAGTCA
* *
1095449 GTGGCAACCCTTTTCAAAGCCCACACAAGTCG
1 GTGGC-ATCC-TTTCAAAG-CC-CACAAGTCA
*
1095481 GTGGCAACCCATTTCAAAGCCCAAACAAGTC-
1 GTGGC-ATCC-TTTCAAAGCCC--ACAAGTCA
* * *
1095512 GATGGCAACCCATTTCAAATCCCATACAAGTCG
1 G-TGGC-ATCC-TTTCAAAGCCC--ACAAGTCA
* *
1095545 GTGGCAACCCTTTTCAAAGCCCACACAAGTCG
1 GTGGC-ATCC-TTTCAAAG-CC-CACAAGTCA
* *
1095577 GTGGCAACCCTTTTTAAAGCCCACAAGTCA
1 GTGGC-ATCC-TTTCAAAGCCCACAAGTCA
*
1095607 GTGGCA-CCATTTCAAAGCCCACACAAGTCG
1 GTGGCATCC-TTTCAAAG-CC-CACAAGTCA
* *
1095637 GTGGCA-CTATTTCAAAGCCCACGTAAGTCG
1 GTGGCATC-CTTTCAAAGCCCAC--AAGTCA
* * *
1095667 GTGGTAACCCATTTCAAAGCCCACACAAGTCG
1 GTGG-CATCC-TTTCAAAG-CC-CACAAGTCA
* *
1095699 GTGGCAACCCATTTCAAAGCCCACACAAGTCG
1 GTGGC-ATCC-TTTCAAAG-CC-CACAAGTCA
* *
1095731 GTGGCAACCCTTTTCAAAGCCCACACAAGTCG
1 GTGGC-ATCC-TTTCAAAG-CC-CACAAGTCA
*
1095763 GTGGCAACCCATTTCAAAGCCCACACAAGTC-
1 GTGGC-ATCC-TTTCAAAG-CC-CACAAGTCA
* * *
1095794 GATGGCAACCCATTTCAAACCCCACACAAGTCG
1 G-TGGC-ATCC-TTTCAAA-GCC-CACAAGTCA
* * *
1095827 GTGGTAACCCATTTCAAAGCCGACACAAGTCG
1 GTGG-CATCC-TTTCAAAGCC--CACAAGTCA
*
1095859 GTGGCAACCCTTTTCAAAGCCCACA
1 GTGGC-ATCC-TTTCAAAGCCCACA
1095884 CAAGTTGATG
Statistics
Matches: 776, Mismatches: 61, Indels: 100
0.83 0.07 0.11
Matches are distributed among these distances:
28 91 0.12
29 45 0.06
30 199 0.26
31 14 0.02
32 411 0.53
33 9 0.01
34 7 0.01
ACGTcount: A:0.30, C:0.32, G:0.18, T:0.20
Consensus pattern (28 bp):
GTGGCATCCTTTCAAAGCCCACAAGTCA
Found at i:1095532 original size:282 final size:282
Alignment explanation
Indices: 1094987--1095883 Score: 1344
Period size: 282 Copynumber: 3.2 Consensus size: 282
1094977 TTTTTAAGTC
* * * ** *
1094987 CACAAGGCGGTGGCATTCCCTTCT-AAAG-CC-CACAAGTTAGTGGC-ACCTTTTTCAAAGCCCA
1 CACAAGTCGGTGGCA-ACCCTTTTCAAAGCCCACACAAGTCGGTGGCAACCCTTTTCAAAGCCCA
* * * * **
1095048 CAAGTTAGTGGCATCTTTTCAAAG-CC-CACAAGTCAGTGGCATCT-TTTCAAAGTCCACACAAG
65 CAAGTCAGTGGCACCATTTCAAAGCCCACACAAGTCAGTGGCA-CTATTTCAAAGCCCACGTAAG
* * *
1095110 TTGGTGGC-ATCC-TTTCAAAG-CC-CACAAGTCGGTGGCAACCC-TTTTCAAAG-CC-CACAAC
129 TCGGTGGCAACCCATTTCAAAGCCCACACAAGTCGGTGGCAACCCATTTT-AAAGCCCACACAAG
* * * *
1095168 TCAGTGGC-A-CCATTTCAAAGCCCACACAAGTCGGTGG-TA-CTATTTCAAAGCCCACACAAGT
193 TCGGTGGCAACCCTTTTCAAAGCCCACACAAGTCGGTGGCAACCCATTTCAAAGCCCACACAAGT
* *
1095229 CGGTGGCAACTCATTTCAAATCCCA
258 CGATGGCAACCCATTTCAAATCCCA
1095254 CACAAGTCGGTGGCAACCCTTTTCAAAGCCCACACAAGTCGGTGGCAACCCTTTTCAAAGCCCAC
1 CACAAGTCGGTGGCAACCCTTTTCAAAGCCCACACAAGTCGGTGGCAACCCTTTTCAAAGCCCAC
*
1095319 AAGTCAGTGGCACCATTTCAAAGCCCACACAAGTCAGTGACACTATTTCAAAGCCCACGTAAGTC
66 AAGTCAGTGGCACCATTTCAAAGCCCACACAAGTCAGTGGCACTATTTCAAAGCCCACGTAAGTC
*
1095384 GGTGGCAACCCATTTCAAAGCCCACACAAGTCGGTGGCAACCCATTTTAAAGCCCACACAAGTTG
131 GGTGGCAACCCATTTCAAAGCCCACACAAGTCGGTGGCAACCCATTTTAAAGCCCACACAAGTCG
*
1095449 GTGGCAACCCTTTTCAAAGCCCACACAAGTCGGTGGCAACCCATTTCAAAGCCCAAACAAGTCGA
196 GTGGCAACCCTTTTCAAAGCCCACACAAGTCGGTGGCAACCCATTTCAAAGCCCACACAAGTCGA
1095514 TGGCAACCCATTTCAAATCCCA
261 TGGCAACCCATTTCAAATCCCA
* *
1095536 TACAAGTCGGTGGCAACCCTTTTCAAAGCCCACACAAGTCGGTGGCAACCCTTTTTAAAGCCCAC
1 CACAAGTCGGTGGCAACCCTTTTCAAAGCCCACACAAGTCGGTGGCAACCCTTTTCAAAGCCCAC
*
1095601 AAGTCAGTGGCACCATTTCAAAGCCCACACAAGTCGGTGGCACTATTTCAAAGCCCACGTAAGTC
66 AAGTCAGTGGCACCATTTCAAAGCCCACACAAGTCAGTGGCACTATTTCAAAGCCCACGTAAGTC
* *
1095666 GGTGGTAACCCATTTCAAAGCCCACACAAGTCGGTGGCAACCCATTTCAAAGCCCACACAAGTCG
131 GGTGGCAACCCATTTCAAAGCCCACACAAGTCGGTGGCAACCCATTTTAAAGCCCACACAAGTCG
1095731 GTGGCAACCCTTTTCAAAGCCCACACAAGTCGGTGGCAACCCATTTCAAAGCCCACACAAGTCGA
196 GTGGCAACCCTTTTCAAAGCCCACACAAGTCGGTGGCAACCCATTTCAAAGCCCACACAAGTCGA
*
1095796 TGGCAACCCATTTCAAACCCCA
261 TGGCAACCCATTTCAAATCCCA
* * *
1095818 CACAAGTCGGTGGTAACCCATTTCAAAGCCGACACAAGTCGGTGGCAACCCTTTTCAAAGCCCAC
1 CACAAGTCGGTGGCAACCCTTTTCAAAGCCCACACAAGTCGGTGGCAACCCTTTTCAAAGCCCAC
1095883 A
66 A
1095884 CAAGTTGATG
Statistics
Matches: 574, Mismatches: 38, Indels: 21
0.91 0.06 0.03
Matches are distributed among these distances:
266 6 0.01
267 18 0.03
268 2 0.00
269 12 0.02
270 37 0.06
271 4 0.01
272 36 0.06
273 3 0.01
274 8 0.01
275 2 0.00
276 23 0.04
277 6 0.01
278 11 0.02
279 1 0.00
280 27 0.05
281 1 0.00
282 377 0.66
ACGTcount: A:0.30, C:0.32, G:0.18, T:0.20
Consensus pattern (282 bp):
CACAAGTCGGTGGCAACCCTTTTCAAAGCCCACACAAGTCGGTGGCAACCCTTTTCAAAGCCCAC
AAGTCAGTGGCACCATTTCAAAGCCCACACAAGTCAGTGGCACTATTTCAAAGCCCACGTAAGTC
GGTGGCAACCCATTTCAAAGCCCACACAAGTCGGTGGCAACCCATTTTAAAGCCCACACAAGTCG
GTGGCAACCCTTTTCAAAGCCCACACAAGTCGGTGGCAACCCATTTCAAAGCCCACACAAGTCGA
TGGCAACCCATTTCAAATCCCA
Done.