Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold323
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1512004
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 5 of 9
Found at i:720972 original size:21 final size:19
Alignment explanation
Indices: 720926--720979 Score: 63
Period size: 21 Copynumber: 2.7 Consensus size: 19
720916 ATCGATACAA
**
720926 TGTATCGATACATGTTCAT
1 TGTATCGATACATGGACAT
*
720945 TGAATCGATACATGGACAAAT
1 TGTATCGATACATGGAC--AT
720966 TGTATCGATACATG
1 TGTATCGATACATG
720980 AAACTGGCAG
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
19 14 0.48
21 15 0.52
ACGTcount: A:0.33, C:0.15, G:0.19, T:0.33
Consensus pattern (19 bp):
TGTATCGATACATGGACAT
Found at i:726532 original size:13 final size:13
Alignment explanation
Indices: 726514--726540 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
726504 ACATGCTGCT
726514 TTGTATCGATACA
1 TTGTATCGATACA
726527 TTGTATCGATACA
1 TTGTATCGATACA
726540 T
1 T
726541 GTTCATTGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:726537 original size:33 final size:32
Alignment explanation
Indices: 726495--726559 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 32
726485 AACACCCAGA
* *
726495 TGTATCGATACATGCTGCTTTGTATCGATACAT
1 TGTATCGATACATG-TGCATTGAATCGATACAT
*
726528 TGTATCGATACATGTTCATTGAATCGATACAT
1 TGTATCGATACATGTGCATTGAATCGATACAT
726560 GAAACTGGCA
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 15 0.52
33 14 0.48
ACGTcount: A:0.28, C:0.17, G:0.17, T:0.38
Consensus pattern (32 bp):
TGTATCGATACATGTGCATTGAATCGATACAT
Found at i:726626 original size:13 final size:13
Alignment explanation
Indices: 726605--726635 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
726595 CGATACATGG
*
726605 TACAATGTATCGA
1 TACATTGTATCGA
726618 TACATTGTATCGA
1 TACATTGTATCGA
726631 TACAT
1 TACAT
726636 GGTACAATGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.35, C:0.16, G:0.13, T:0.35
Consensus pattern (13 bp):
TACATTGTATCGA
Found at i:726631 original size:33 final size:33
Alignment explanation
Indices: 726589--726655 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
726579 CTATCACTAT
726589 TTGTATCGATACATGGTACAATGTATCGATACA
1 TTGTATCGATACATGGTACAATGTATCGATACA
726622 TTGTATCGATACATGGTACAATGTATCGATACA
1 TTGTATCGATACATGGTACAATGTATCGATACA
726655 T
1 T
726656 GAAGAAATGT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.33, C:0.15, G:0.18, T:0.34
Consensus pattern (33 bp):
TTGTATCGATACATGGTACAATGTATCGATACA
Found at i:726667 original size:20 final size:20
Alignment explanation
Indices: 726590--726656 Score: 85
Period size: 20 Copynumber: 3.7 Consensus size: 20
726580 TATCACTATT
726590 TGTATCGATACATGGTACAA
1 TGTATCGATACATGGTACAA
726610 TGTATCGATACA---T----
1 TGTATCGATACATGGTACAA
726623 TGTATCGATACATGGTACAA
1 TGTATCGATACATGGTACAA
726643 TGTATCGATACATG
1 TGTATCGATACATG
726657 AAGAAATGTA
Statistics
Matches: 40, Mismatches: 0, Indels: 14
0.74 0.00 0.26
Matches are distributed among these distances:
13 12 0.30
16 1 0.03
17 1 0.03
20 26 0.65
ACGTcount: A:0.33, C:0.15, G:0.19, T:0.33
Consensus pattern (20 bp):
TGTATCGATACATGGTACAA
Found at i:730013 original size:23 final size:23
Alignment explanation
Indices: 729952--730019 Score: 65
Period size: 21 Copynumber: 3.1 Consensus size: 23
729942 GATAAAAAAG
729952 AAAGAAAAATA-AACTAAAG-ATA
1 AAAGAAAAATAGAA-TAAAGAATA
*
729974 AGAGAAAAA-ATG-A-AAAGAATA
1 AAAGAAAAATA-GAATAAAGAATA
*
729995 AAAGAAAAATAGAATAAAGATTA
1 AAAGAAAAATAGAATAAAGAATA
730018 AA
1 AA
730020 TTAAAAAAAA
Statistics
Matches: 37, Mismatches: 3, Indels: 11
0.73 0.06 0.22
Matches are distributed among these distances:
20 4 0.11
21 13 0.35
22 11 0.30
23 9 0.24
ACGTcount: A:0.72, C:0.01, G:0.13, T:0.13
Consensus pattern (23 bp):
AAAGAAAAATAGAATAAAGAATA
Found at i:732761 original size:13 final size:13
Alignment explanation
Indices: 732743--732767 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
732733 CATTTTATGG
732743 TGTATCGATACAA
1 TGTATCGATACAA
732756 TGTATCGATACA
1 TGTATCGATACA
732768 TACTGTGTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:733256 original size:14 final size:14
Alignment explanation
Indices: 733237--733283 Score: 64
Period size: 12 Copynumber: 3.6 Consensus size: 14
733227 GGCTTAGCTG
733237 AAAAGAGAGAAAAA
1 AAAAGAGAGAAAAA
*
733251 AAAAGAGAG-GAAA
1 AAAAGAGAGAAAAA
733264 AAAA-AGA-AAAAA
1 AAAAGAGAGAAAAA
733276 AAAAGAGA
1 AAAAGAGA
733284 TTTCTAGCAA
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
12 10 0.34
13 10 0.34
14 9 0.31
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (14 bp):
AAAAGAGAGAAAAA
Found at i:735179 original size:26 final size:27
Alignment explanation
Indices: 735150--735201 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
735140 TTGTATAATT
*
735150 TTATTTT-TAGGGAAACTCTAACCCTA
1 TTATTTTGAAGGGAAACTCTAACCCTA
* *
735176 TTATTTTGAAGGGATACTCTATCCCT
1 TTATTTTGAAGGGAAACTCTAACCCT
735202 GTTTGTGAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.27, C:0.19, G:0.13, T:0.40
Consensus pattern (27 bp):
TTATTTTGAAGGGAAACTCTAACCCTA
Found at i:735412 original size:197 final size:197
Alignment explanation
Indices: 735105--735474 Score: 462
Period size: 197 Copynumber: 1.9 Consensus size: 197
735095 CGGATCCTCC
* * *
735105 ACCCTATTTTTCATAAGAAAACTCAAATTTTCTCTTTGTATAATTTTATTTTTAGGGAAACTCTA
1 ACCCTATTTTTCATAAAAAAACTCAAATTTTCTCTTTGTATAATTTTATCTTTAGGGAAAATCTA
* * * * * * *
735170 ACCCTATTATTTTGAAGGGATACTCTATCCCTGTTTGTGAAAAAAACTTAAGTTTACTATGTGTT
66 ACCCTACTAGTCTGAAGGGATACTCTATCCATGTTTGTGAAAAAAAATCAAATTTACTATGTGTT
* *
735235 CTTAAGTATTTTCATAATCTTCGACTTT-GGGAAAACTCCAACCCCATTATTTCGAGGGAAACCT
131 CCTAAATATTTTCATAATCTTCGACTTTAGGG-AAACTCCAACCCCATTATTTCGAGGGAAACCT
735299 CTA
195 CTA
* * *
735302 ACCCTATTCTTT-ATAAAAAAACTCAAATTTTCTTTTTGTATAATTTTATCTTTGGGGAAAATTT
1 ACCCTATT-TTTCATAAAAAAACTCAAATTTTCTCTTTGTATAATTTTATCTTTAGGGAAAATCT
* * * * * *
735366 AACCCTACTAGTCTGAGGGGATGCTTTAATCTCAT-TCTT-T-AAAAAAAATCAAATTTATTCTT
65 AACCCTACTAGTCTGAAGGGATACTCT-ATC-CATGT-TTGTGAAAAAAAATCAAATTTACTATG
*
735428 TGTTCCTAAATATTTTCATAATCTTCGACTTTAGGGAAACTTCAACC
127 TGTTCCTAAATATTTTCATAATCTTCGACTTTAGGGAAACTCCAACC
735475 TTACTACTTC
Statistics
Matches: 146, Mismatches: 22, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
197 131 0.90
198 11 0.08
199 4 0.03
ACGTcount: A:0.31, C:0.18, G:0.11, T:0.40
Consensus pattern (197 bp):
ACCCTATTTTTCATAAAAAAACTCAAATTTTCTCTTTGTATAATTTTATCTTTAGGGAAAATCTA
ACCCTACTAGTCTGAAGGGATACTCTATCCATGTTTGTGAAAAAAAATCAAATTTACTATGTGTT
CCTAAATATTTTCATAATCTTCGACTTTAGGGAAACTCCAACCCCATTATTTCGAGGGAAACCTC
TA
Found at i:735506 original size:105 final size:107
Alignment explanation
Indices: 735397--735661 Score: 290
Period size: 105 Copynumber: 2.5 Consensus size: 107
735387 TGCTTTAATC
*
735397 TCATTCTTTAAAAAAAA-TCAAATTTATTCTTTGTTCCTAAATATTTTCATAATCTTCGACTTTA
1 TCATTCTTTAAAAAAAACTCAAATTTATTCTTTGTTCCTAAATATTTTCATAATCTTCAACTTTA
* * * * **
735461 GGGAAACTTCAACCTTACTACTTCGAAGGGATACTCCAA-CT
66 GGGAAACTCCAACCCTACTACTCCAAAGCAATACTCCAACCT
*** * *
735502 TCATT-AAAAAAAAAAATTCAAATTTACTT-TTTGTTCCTAAATATTTTCATAATCTTTAACTTT
1 TCATTCTTTAAAAAAAACTCAAATTTA-TTCTTTGTTCCTAAATATTTTCATAATCTTCAACTTT
* * *
735565 GGGGGAACTCCAACCCTACTACTCCAAAGCAATACTCTAACCT
65 AGGGAAACTCCAACCCTACTACTCCAAAGCAATACTCCAACCT
* * * *
735608 T-ATTCTTTATAAAAAAACTCAAAATTT-CTCCTTGTTTCTAAATATCTTCATAAT
1 TCATTCTTTA-AAAAAAACTC-AAATTTATTCTTTGTTCCTAAATATTTTCATAAT
735662 TTTATTTTCA
Statistics
Matches: 131, Mismatches: 22, Indels: 12
0.79 0.13 0.07
Matches are distributed among these distances:
104 8 0.06
105 80 0.61
106 7 0.05
107 30 0.23
108 6 0.05
ACGTcount: A:0.35, C:0.20, G:0.06, T:0.38
Consensus pattern (107 bp):
TCATTCTTTAAAAAAAACTCAAATTTATTCTTTGTTCCTAAATATTTTCATAATCTTCAACTTTA
GGGAAACTCCAACCCTACTACTCCAAAGCAATACTCCAACCT
Found at i:739084 original size:66 final size:67
Alignment explanation
Indices: 738923--739084 Score: 258
Period size: 66 Copynumber: 2.5 Consensus size: 67
738913 CCTTACAATG
*
738923 CTATC-TTTTCACAGGCTAAGATAGAACC-TCCTTATCTTTTCACAAGCTAAGATAGAACCTCTT
1 CTATCTTTTTCAAAGGCTAAGATAGAACCTTCCTTATCTTTTCACAAGCTAAGATAGAACCTCTT
738986 CA
66 CA
* * *
738988 CTATCTTTTTCAAAGGCTAAAATAGAACCTTCC-TATTTTTTCACAAGCTAAGATAGAACCTTTT
1 CTATCTTTTTCAAAGGCTAAGATAGAACCTTCCTTATCTTTTCACAAGCTAAGATAGAACCTCTT
*
739052 CC
66 CA
739054 CTATCTTTTTCAAAGGCTAAGATAGAACCTT
1 CTATCTTTTTCAAAGGCTAAGATAGAACCTT
739085 TTAATCACTA
Statistics
Matches: 89, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
65 5 0.06
66 81 0.91
67 3 0.03
ACGTcount: A:0.31, C:0.23, G:0.10, T:0.35
Consensus pattern (67 bp):
CTATCTTTTTCAAAGGCTAAGATAGAACCTTCCTTATCTTTTCACAAGCTAAGATAGAACCTCTT
CA
Found at i:739086 original size:35 final size:34
Alignment explanation
Indices: 738923--739085 Score: 191
Period size: 31 Copynumber: 4.9 Consensus size: 34
738913 CCTTACAATG
*
738923 CTATC-TTTTCACAGGCTAAGATAGAACC--TCC
1 CTATCTTTTTCAAAGGCTAAGATAGAACCTTTCC
* *
738954 TTATC-TTTTCACAA-GCTAAGATAGAACCTCTTCA
1 CTATCTTTTTCA-AAGGCTAAGATAGAACCT-TTCC
*
738988 CTATCTTTTTCAAAGGCTAAAATAGAACC-TT-C
1 CTATCTTTTTCAAAGGCTAAGATAGAACCTTTCC
739020 CTAT-TTTTTCACAA-GCTAAGATAGAACCTTTTCC
1 CTATCTTTTTCA-AAGGCTAAGATAGAACC-TTTCC
739054 CTATCTTTTTCAAAGGCTAAGATAGAACCTTT
1 CTATCTTTTTCAAAGGCTAAGATAGAACCTTT
739086 TAATCACTAT
Statistics
Matches: 113, Mismatches: 7, Indels: 21
0.80 0.05 0.15
Matches are distributed among these distances:
31 44 0.39
32 7 0.06
33 4 0.04
34 18 0.16
35 40 0.35
ACGTcount: A:0.31, C:0.23, G:0.10, T:0.35
Consensus pattern (34 bp):
CTATCTTTTTCAAAGGCTAAGATAGAACCTTTCC
Found at i:739654 original size:32 final size:33
Alignment explanation
Indices: 739611--739675 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 33
739601 CATTTTGTGG
* *
739611 TGTATTCATACAAAG-AACATGTATTGATACAT
1 TGTATTAATACAAAGAAACATGTATCGATACAT
*
739643 TGTATTAATACAAAGAAATATGTATCGATACAT
1 TGTATTAATACAAAGAAACATGTATCGATACAT
739676 CTGGGTGTGT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 14 0.48
33 15 0.52
ACGTcount: A:0.43, C:0.11, G:0.12, T:0.34
Consensus pattern (33 bp):
TGTATTAATACAAAGAAACATGTATCGATACAT
Found at i:740320 original size:41 final size:41
Alignment explanation
Indices: 740259--740343 Score: 134
Period size: 41 Copynumber: 2.1 Consensus size: 41
740249 GTACCAATTT
*
740259 TATGAGAAATCTCCCCCTTAATAAAAGCTCTCTATTTCTCC
1 TATGAGAAATCTCCCACTTAATAAAAGCTCTCTATTTCTCC
* * *
740300 TATGAGAAATCTCCCACTTAATAAAAGTTCTTTATTTCTTC
1 TATGAGAAATCTCCCACTTAATAAAAGCTCTCTATTTCTCC
740341 TAT
1 TAT
740344 TTTGATGTAA
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.31, C:0.24, G:0.07, T:0.39
Consensus pattern (41 bp):
TATGAGAAATCTCCCACTTAATAAAAGCTCTCTATTTCTCC
Found at i:748027 original size:18 final size:18
Alignment explanation
Indices: 748004--748042 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
747994 AACATACTGA
748004 TTTGTTTTCATTAGCAAG
1 TTTGTTTTCATTAGCAAG
748022 TTTGTTTTCATTAGCAAG
1 TTTGTTTTCATTAGCAAG
748040 TTT
1 TTT
748043 AGAATGATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.21, C:0.10, G:0.15, T:0.54
Consensus pattern (18 bp):
TTTGTTTTCATTAGCAAG
Found at i:750191 original size:13 final size:13
Alignment explanation
Indices: 750173--750197 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
750163 CATTTTATGG
750173 TGTATCGATACAA
1 TGTATCGATACAA
750186 TGTATCGATACA
1 TGTATCGATACA
750198 TACTGTGTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:750213 original size:32 final size:33
Alignment explanation
Indices: 750150--750217 Score: 102
Period size: 33 Copynumber: 2.1 Consensus size: 33
750140 CGTTACAAGC
**
750150 CAATGTATCGATACATTTTATGGTGTATCGATA
1 CAATGTATCGATACATACTATGGTGTATCGATA
*
750183 CAATGTATCGATACATACTGT-GTGTATCGATA
1 CAATGTATCGATACATACTATGGTGTATCGATA
750215 CAA
1 CAA
750218 GTTTAGCTAC
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
32 14 0.44
33 18 0.56
ACGTcount: A:0.32, C:0.15, G:0.18, T:0.35
Consensus pattern (33 bp):
CAATGTATCGATACATACTATGGTGTATCGATA
Found at i:753367 original size:97 final size:97
Alignment explanation
Indices: 753239--753488 Score: 356
Period size: 98 Copynumber: 2.6 Consensus size: 97
753229 TTTTTGATTA
* * * * *
753239 AAAAATGGGTTTGGAGTATCTCCTTGGAGGAATAGGGTTGGTGTATCCCCGATGATGACAATTTA
1 AAAAGTGGGGTTGGAGTATCCCCTCGGAGGAATAGGGTTGGAGTATCCCCGATGATGACAATTTA
753304 AGTAAGAATAAGATTTGAATCTTGACAAGTTT
66 AGTAAGAATAAGATTTGAATCTTGACAAGTTT
* * *
753336 AAAAGTGGGGTTGGAGTATCCCCTCAGAGGAATGGGGTTAGGACTATCCCCGATGATGACAATTT
1 AAAAGTGGGGTTGGAGTATCCCCTCGGAGGAATAGGGTT-GGAGTATCCCCGATGATGACAATTT
* *
753401 AAGTGAGAATTAGATTTGAATCTTGACAAGTTT
65 AAGTAAGAATAAGATTTGAATCTTGACAAGTTT
* * * * *
753434 AAAAGCGAGGTTGGAATATCCCCTCGGAGGAATAGGGTTTGAGTATCCTCGATGA
1 AAAAGTGGGGTTGGAGTATCCCCTCGGAGGAATAGGGTTGGAGTATCCCCGATGA
753489 ATAAAAATTT
Statistics
Matches: 134, Mismatches: 18, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
97 46 0.34
98 88 0.66
ACGTcount: A:0.31, C:0.13, G:0.28, T:0.29
Consensus pattern (97 bp):
AAAAGTGGGGTTGGAGTATCCCCTCGGAGGAATAGGGTTGGAGTATCCCCGATGATGACAATTTA
AGTAAGAATAAGATTTGAATCTTGACAAGTTT
Found at i:755490 original size:48 final size:49
Alignment explanation
Indices: 755368--755493 Score: 173
Period size: 49 Copynumber: 2.6 Consensus size: 49
755358 GAGGAGTGCT
** * *
755368 AATGTGCCAATTCAAGGGCAGTGACATTGGGCTAAGGGAAAAGTGGACC
1 AATGTGCTGATTCAAGGGCAGCGACATTGGGCCAAGGGAAAAGTGGACC
* * *
755417 AATGTGCTGCTTCAAGGGCAACGACATTGGGCCAATGGAAAAGTGGA-C
1 AATGTGCTGATTCAAGGGCAGCGACATTGGGCCAAGGGAAAAGTGGACC
*
755465 AATGTGCTGATTCAAGGCCAGCGACATTG
1 AATGTGCTGATTCAAGGGCAGCGACATTG
755494 AGTTAATAAA
Statistics
Matches: 67, Mismatches: 10, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
48 27 0.40
49 40 0.60
ACGTcount: A:0.31, C:0.18, G:0.31, T:0.20
Consensus pattern (49 bp):
AATGTGCTGATTCAAGGGCAGCGACATTGGGCCAAGGGAAAAGTGGACC
Found at i:755793 original size:86 final size:85
Alignment explanation
Indices: 755604--756063 Score: 527
Period size: 86 Copynumber: 5.4 Consensus size: 85
755594 GCTTTTAATA
* * *
755604 AAAGG-TGCCACTAACTTTTGTGGGCTTTGAAAGGG-TGCCACCGACTTGTGGGCTTTGAAAGGG
1 AAAGGATGCCACTGAC--TTGTGGGCTTTGAAGGGGATGCCACTGACTTGTGGGCTTTGAAAGGG
*
755667 TATGCCATTGACTTTGTGGGCTTTG
64 --TGCCACTGAC-TTGTGGGCTTTG
* * * *
755692 AAAGGGTGCCACTGACTTGTGGGCTTTGAAGGGGTATGCCACTCACTTGTAGGCTTTAAAAGGGT
1 AAAGGATGCCACTGACTTGTGGGCTTTGAAGGGG-ATGCCACTGACTTGTGGGCTTTGAAAGGGT
*
755757 GCCACTAACTTGTGGGCTTTG
65 GCCACTGACTTGTGGGCTTTG
* *
755778 AAAGGATGCCACTGACTTGTGGTCTTTGAAGGGGTATGCCGCTGACTTGTGGGCTTTGAAAGGGT
1 AAAGGATGCCACTGACTTGTGGGCTTTGAAGGGG-ATGCCACTGACTTGTGGGCTTTGAAAGGGT
*
755843 GCCACTAACTTGTGGGCTTTG
65 GCCACTGACTTGTGGGCTTTG
* * * * *
755864 AAAGGATGCCACTGACTTGTGGTCTTTTGTAA--AGATGCCGCTGACTTGTGGGCTTTGAAACGA
1 AAAGGATGCCACTGACTTGTGGGC-TTTG-AAGGGGATGCCACTGACTTGTGGGCTTTGAAAGGG
* * *
755927 TGCCACTGAGTTTTGGGCTTTA
64 TGCCACTGACTTGTGGGCTTTG
* * * *
755949 AAAGGGTGCCACTGATTTGTGGGCTTTGAA-AGGATGCCACTGACTTGTGGGCTTTAGAAA-GAT
1 AAAGGATGCCACTGACTTGTGGGCTTTGAAGGGGATGCCACTGACTTGTGGGCTTT-GAAAGGGT
756012 GCCACTGACTTGTGGGCTTTG
65 GCCACTGACTTGTGGGCTTTG
* * ***
756033 AAAGGATTCCACTAACCCATGGGCTTTGAAG
1 AAAGGATGCCACTGACTTGTGGGCTTTGAAG
756064 AGATGAACGT
Statistics
Matches: 328, Mismatches: 36, Indels: 19
0.86 0.09 0.05
Matches are distributed among these distances:
83 2 0.01
84 70 0.21
85 70 0.21
86 117 0.36
87 29 0.09
88 7 0.02
89 33 0.10
ACGTcount: A:0.21, C:0.18, G:0.31, T:0.30
Consensus pattern (85 bp):
AAAGGATGCCACTGACTTGTGGGCTTTGAAGGGGATGCCACTGACTTGTGGGCTTTGAAAGGGTG
CCACTGACTTGTGGGCTTTG
Found at i:756062 original size:28 final size:28
Alignment explanation
Indices: 755604--756045 Score: 530
Period size: 28 Copynumber: 15.5 Consensus size: 28
755594 GCTTTTAATA
*
755604 AAAGG-TGCCACTAACTTTTGTGGGCTTTG
1 AAAGGATGCCACTGAC--TTGTGGGCTTTG
* *
755633 AAAGGGTGCCACCGACTTGTGGGCTTTG
1 AAAGGATGCCACTGACTTGTGGGCTTTG
*
755661 AAAGGGTATGCCATTGACTTTGTGGGCTTTG
1 AAA-GG-ATGCCACTGAC-TTGTGGGCTTTG
*
755692 AAAGGGTGCCACTGACTTGTGGGCTTTG
1 AAAGGATGCCACTGACTTGTGGGCTTTG
* * * *
755720 AAGGGGTATGCCACTCACTTGTAGGCTTTA
1 AA-AGG-ATGCCACTGACTTGTGGGCTTTG
* *
755750 AAAGGGTGCCACTAACTTGTGGGCTTTG
1 AAAGGATGCCACTGACTTGTGGGCTTTG
*
755778 AAAGGATGCCACTGACTTGTGGTCTTTG
1 AAAGGATGCCACTGACTTGTGGGCTTTG
* *
755806 AAGGGGTATGCCGCTGACTTGTGGGCTTTG
1 AA-AGG-ATGCCACTGACTTGTGGGCTTTG
* *
755836 AAAGGGTGCCACTAACTTGTGGGCTTTG
1 AAAGGATGCCACTGACTTGTGGGCTTTG
*
755864 AAAGGATGCCACTGACTTGTGGTCTTTTG
1 AAAGGATGCCACTGACTTGTGGGC-TTTG
*
755893 TAAA-GATGCCGCTGACTTGTGGGCTTTG
1 -AAAGGATGCCACTGACTTGTGGGCTTTG
* * * *
755921 AAACGATGCCACTGAGTTTTGGGCTTTA
1 AAAGGATGCCACTGACTTGTGGGCTTTG
* *
755949 AAAGGGTGCCACTGATTTGTGGGCTTTG
1 AAAGGATGCCACTGACTTGTGGGCTTTG
755977 AAAGGATGCCACTGACTTGTGGGCTTTAG
1 AAAGGATGCCACTGACTTGTGGGCTTT-G
756006 AAA-GATGCCACTGACTTGTGGGCTTTG
1 AAAGGATGCCACTGACTTGTGGGCTTTG
*
756033 AAAGGATTCCACT
1 AAAGGATGCCACT
756046 AACCCATGGG
Statistics
Matches: 356, Mismatches: 44, Indels: 27
0.83 0.10 0.06
Matches are distributed among these distances:
27 7 0.02
28 219 0.62
29 50 0.14
30 65 0.18
31 15 0.04
ACGTcount: A:0.21, C:0.18, G:0.31, T:0.31
Consensus pattern (28 bp):
AAAGGATGCCACTGACTTGTGGGCTTTG
Found at i:757326 original size:4 final size:4
Alignment explanation
Indices: 757317--757370 Score: 53
Period size: 4 Copynumber: 14.2 Consensus size: 4
757307 CCCCTTTTTC
* *
757317 TGTT TGTT TGTT T-TT TGTT TGTTT TTTT TGTT T-TT TATT T-TT TGTT
1 TGTT TGTT TGTT TGTT TGTT TG-TT TGTT TGTT TGTT TGTT TGTT TGTT
757363 T-TT TGTT T
1 TGTT TGTT T
757371 TTTTTGTTTT
Statistics
Matches: 43, Mismatches: 2, Indels: 10
0.78 0.04 0.18
Matches are distributed among these distances:
3 12 0.28
4 28 0.65
5 3 0.07
ACGTcount: A:0.02, C:0.00, G:0.15, T:0.83
Consensus pattern (4 bp):
TGTT
Found at i:757331 original size:1 final size:1
Alignment explanation
Indices: 757327--757391 Score: 58
Period size: 1 Copynumber: 65.0 Consensus size: 1
757317 TGTTTGTTTG
* * * * * * * *
757327 TTTTTTGTTTGTTTTTTTTGTTTTTTATTTTTTGTTTTTTGTTTTTTTTGTTTTTTATTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
757392 GGTAAGAAGG
Statistics
Matches: 48, Mismatches: 16, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
1 48 1.00
ACGTcount: A:0.03, C:0.00, G:0.09, T:0.88
Consensus pattern (1 bp):
T
Found at i:757335 original size:7 final size:7
Alignment explanation
Indices: 757311--757389 Score: 88
Period size: 7 Copynumber: 10.9 Consensus size: 7
757301 TCTAGACCCC
757311 TTTTTCTG
1 TTTTT-TG
757319 TTTGTTTG
1 TTT-TTTG
757327 TTTTTTG
1 TTTTTTG
*
757334 TTTGTT-
1 TTTTTTG
757340 TTTTTTG
1 TTTTTTG
*
757347 TTTTTTA
1 TTTTTTG
757354 TTTTTTG
1 TTTTTTG
757361 TTTTTTG
1 TTTTTTG
757368 TTTTTTTTG
1 --TTTTTTG
*
757377 TTTTTTA
1 TTTTTTG
757384 TTTTTT
1 TTTTTT
757390 TTGGTAAGAA
Statistics
Matches: 62, Mismatches: 5, Indels: 9
0.82 0.07 0.12
Matches are distributed among these distances:
6 5 0.08
7 40 0.65
8 8 0.13
9 9 0.15
ACGTcount: A:0.03, C:0.01, G:0.11, T:0.85
Consensus pattern (7 bp):
TTTTTTG
Found at i:757373 original size:16 final size:16
Alignment explanation
Indices: 757319--757392 Score: 91
Period size: 16 Copynumber: 4.8 Consensus size: 16
757309 CCTTTTTCTG
* *
757319 TTTGTTTGTTTT-TTG
1 TTTGTTTTTTTTGTTT
757334 TTTGTTTTTTTTG-TT
1 TTTGTTTTTTTTGTTT
*
757349 TTT-TATTTTTTGTTT
1 TTTGTTTTTTTTGTTT
757364 TTTGTTTTTTTTGTTT
1 TTTGTTTTTTTTGTTT
*
757380 TTTATTTTTTTTG
1 TTTGTTTTTTTTG
757393 GTAAGAAGGA
Statistics
Matches: 51, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
14 8 0.16
15 20 0.39
16 23 0.45
ACGTcount: A:0.03, C:0.00, G:0.12, T:0.85
Consensus pattern (16 bp):
TTTGTTTTTTTTGTTT
Found at i:763591 original size:13 final size:13
Alignment explanation
Indices: 763573--763599 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
763563 ACATTATGCT
763573 TTGTATCGATACA
1 TTGTATCGATACA
763586 TTGTATCGATACA
1 TTGTATCGATACA
763599 T
1 T
763600 GCTCATTGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:763629 original size:20 final size:19
Alignment explanation
Indices: 763583--763639 Score: 87
Period size: 19 Copynumber: 2.9 Consensus size: 19
763573 TTGTATCGAT
763583 ACATTGTATCGATACATGC
1 ACATTGTATCGATACATGC
* *
763602 TCATTGTATCGATACATGG
1 ACATTGTATCGATACATGC
763621 ACAATTGTATCGATACATG
1 AC-ATTGTATCGATACATG
763640 AGATTGGCAG
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
19 18 0.53
20 16 0.47
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.33
Consensus pattern (19 bp):
ACATTGTATCGATACATGC
Found at i:766804 original size:13 final size:13
Alignment explanation
Indices: 766786--766811 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
766776 TACAGCAAGT
766786 ATGTATCGATACA
1 ATGTATCGATACA
766799 ATGTATCGATACA
1 ATGTATCGATACA
766812 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:769008 original size:21 final size:21
Alignment explanation
Indices: 768975--769019 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
768965 TTGCAAGTTG
*
768975 AAATAAAGAAGTTGGCTAATGA
1 AAATAAAGAAGTTAGCTAA-GA
*
768997 AAATAATG-AGTTAGCTAAGA
1 AAATAAAGAAGTTAGCTAAGA
769017 AAA
1 AAA
769020 ATGAGAACTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 9 0.43
22 7 0.33
ACGTcount: A:0.53, C:0.04, G:0.20, T:0.22
Consensus pattern (21 bp):
AAATAAAGAAGTTAGCTAAGA
Found at i:770839 original size:15 final size:15
Alignment explanation
Indices: 770819--770849 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
770809 TAAAAATGTC
*
770819 CAAAATGAGGAAGCT
1 CAAAATGAAGAAGCT
770834 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
770849 C
1 C
770850 CAAACGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.16, G:0.23, T:0.13
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:772946 original size:13 final size:13
Alignment explanation
Indices: 772928--772966 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
772918 ACATTTTTCT
772928 TTGTATCGATACA
1 TTGTATCGATACA
772941 TTGTATCGATACA
1 TTGTATCGATACA
*
772954 ATGTATCGATACA
1 TTGTATCGATACA
772967 GGGTGATTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.33, C:0.15, G:0.15, T:0.36
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:775527 original size:13 final size:13
Alignment explanation
Indices: 775509--775534 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
775499 TACAGCAAGT
775509 ATGTATCGATACA
1 ATGTATCGATACA
775522 ATGTATCGATACA
1 ATGTATCGATACA
775535 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:780217 original size:96 final size:97
Alignment explanation
Indices: 780095--780310 Score: 310
Period size: 97 Copynumber: 2.2 Consensus size: 97
780085 GTTGGAGTAT
* * * * *
780095 CCTCAGAGAAATGGAGTTGGAATGTCCCTAATGATGACAATTTAAGCGAGAA-TAAATTTGAATC
1 CCTCGGAGCAATGGGGTTGGAGTGTCCCCAATGATGACAATTTAAGCGAGAATTAAATTTGAATC
*
780159 TTGACAAGTTTAAAAGCGAGG-TTGGAGTATCC
66 TTGACAAGTTTAAAAGCG-GGATTGGAATATCC
* ** *
780191 CCTTGGAGCAATGGGGTTGGAGTGTCCCCGTTGATGACAATTTAAGCGAGAATTAGATTTGAATC
1 CCTCGGAGCAATGGGGTTGGAGTGTCCCCAATGATGACAATTTAAGCGAGAATTAAATTTGAATC
780256 TTGACAAGTTTAAAAGCGGGATTGGAATATCC
66 TTGACAAGTTTAAAAGCGGGATTGGAATATCC
*
780288 CCTCGGAGGAATGGGGTTGGAGT
1 CCTCGGAGCAATGGGGTTGGAGT
780311 ATCTCGATGA
Statistics
Matches: 106, Mismatches: 12, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
96 46 0.43
97 60 0.57
ACGTcount: A:0.31, C:0.14, G:0.28, T:0.27
Consensus pattern (97 bp):
CCTCGGAGCAATGGGGTTGGAGTGTCCCCAATGATGACAATTTAAGCGAGAATTAAATTTGAATC
TTGACAAGTTTAAAAGCGGGATTGGAATATCC
Found at i:780330 original size:97 final size:96
Alignment explanation
Indices: 780133--780330 Score: 274
Period size: 97 Copynumber: 2.1 Consensus size: 96
780123 TAATGATGAC
* *
780133 AATTTAAGCGAGAATAAATTTGAATCTTGACAAGTTTAAAAGCGAGGTTGGAGTATCCCCTTGGA
1 AATTTAAGCGAGAATAAATTTGAATCTTGACAAGTTTAAAAGCGAGGTTGGAATATCCCCTCGGA
* * * *
780198 GCAATGGGGTTGGAGTGTCCCCGTTGATGAC
66 GCAATGGGGTTGGAGTATCCCCGATGATAAA
*
780229 AATTTAAGCGAGAATTAGATTTGAATCTTGACAAGTTTAAAAGCG-GGATTGGAATATCCCCTCG
1 AATTTAAGCGAGAA-TAAATTTGAATCTTGACAAGTTTAAAAGCGAGG-TTGGAATATCCCCTCG
* *
780293 GAGGAATGGGGTTGGAGTAT-CTCGATGAATAAA
64 GAGCAATGGGGTTGGAGTATCCCCGATG-ATAAA
780326 AATTT
1 AATTT
780331 TGATTTTATA
Statistics
Matches: 90, Mismatches: 9, Indels: 5
0.87 0.09 0.05
Matches are distributed among these distances:
96 21 0.23
97 69 0.77
ACGTcount: A:0.32, C:0.13, G:0.27, T:0.29
Consensus pattern (96 bp):
AATTTAAGCGAGAATAAATTTGAATCTTGACAAGTTTAAAAGCGAGGTTGGAATATCCCCTCGGA
GCAATGGGGTTGGAGTATCCCCGATGATAAA
Found at i:782545 original size:20 final size:20
Alignment explanation
Indices: 782520--782596 Score: 102
Period size: 20 Copynumber: 3.9 Consensus size: 20
782510 GTAAAAAGAT
* *
782520 AGAATGTATCAATAGATTGA
1 AGAATGTATCGATACATTGA
*
782540 AGAATGTATCGATACATTCA
1 AGAATGTATCGATACATTGA
*
782560 TA-CATGTATCGATACATTGA
1 -AGAATGTATCGATACATTGA
782580 AGAATGTATCGATACAT
1 AGAATGTATCGATACAT
782597 CTGGGTAAAA
Statistics
Matches: 49, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
19 1 0.02
20 47 0.96
21 1 0.02
ACGTcount: A:0.40, C:0.12, G:0.17, T:0.31
Consensus pattern (20 bp):
AGAATGTATCGATACATTGA
Found at i:782567 original size:40 final size:40
Alignment explanation
Indices: 782523--782667 Score: 148
Period size: 40 Copynumber: 3.9 Consensus size: 40
782513 AAAAGATAGA
*
782523 ATGTATCAATAGATTGAAGAATGTATCGATACATTCATAC
1 ATGTATCAATACATTGAAGAATGTATCGATACATTCATAC
*
782563 ATGTATCGATACATTGAAGAATGTATCGATACA-TC-T--
1 ATGTATCAATACATTGAAGAATGTATCGATACATTCATAC
**
782599 GGGTA--AA-A-A--GATAGAATGTATCGATACATTCATAC
1 ATGTATCAATACATTGA-AGAATGTATCGATACATTCATAC
* * *
782634 ATGTATCGATACATTAAAAAATGTATCGATACAT
1 ATGTATCAATACATTGAAGAATGTATCGATACAT
782668 CTAAGTGAAA
Statistics
Matches: 84, Mismatches: 10, Indels: 22
0.72 0.09 0.19
Matches are distributed among these distances:
30 2 0.02
31 16 0.19
32 3 0.04
33 2 0.02
34 1 0.01
35 3 0.04
36 3 0.04
37 1 0.01
38 2 0.02
39 3 0.04
40 47 0.56
41 1 0.01
ACGTcount: A:0.41, C:0.12, G:0.16, T:0.31
Consensus pattern (40 bp):
ATGTATCAATACATTGAAGAATGTATCGATACATTCATAC
Found at i:782587 original size:91 final size:91
Alignment explanation
Indices: 782491--782667 Score: 266
Period size: 91 Copynumber: 1.9 Consensus size: 91
782481 TATATTATTC
* * *
782491 AATGTATCGATACATTTGGGTAAAAAGATAGAATGTATCAATAGATTGA-AGAATGTATCGATAC
1 AATGTATCGATACATCTGGGTAAAAAGATAGAATGTATCAATACATTCATA-AATGTATCGATAC
* * *
782555 ATTCATACATGTATCGATACATTGAAG
65 ATTAAAAAATGTATCGATACATTGAAG
* *
782582 AATGTATCGATACATCTGGGTAAAAAGATAGAATGTATCGATACATTCATACATGTATCGATACA
1 AATGTATCGATACATCTGGGTAAAAAGATAGAATGTATCAATACATTCATAAATGTATCGATACA
782647 TTAAAAAATGTATCGATACAT
66 TTAAAAAATGTATCGATACAT
782668 CTAAGTGAAA
Statistics
Matches: 77, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
91 76 0.99
92 1 0.01
ACGTcount: A:0.41, C:0.11, G:0.17, T:0.31
Consensus pattern (91 bp):
AATGTATCGATACATCTGGGTAAAAAGATAGAATGTATCAATACATTCATAAATGTATCGATACA
TTAAAAAATGTATCGATACATTGAAG
Found at i:782639 original size:20 final size:20
Alignment explanation
Indices: 782613--782667 Score: 83
Period size: 20 Copynumber: 2.8 Consensus size: 20
782603 AAAAAGATAG
* *
782613 AATGTATCGATACATTCATA
1 AATGTATCGATACATTAAAA
*
782633 CATGTATCGATACATTAAAA
1 AATGTATCGATACATTAAAA
782653 AATGTATCGATACAT
1 AATGTATCGATACAT
782668 CTAAGTGAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.42, C:0.15, G:0.11, T:0.33
Consensus pattern (20 bp):
AATGTATCGATACATTAAAA
Found at i:786531 original size:96 final size:97
Alignment explanation
Indices: 786347--786576 Score: 300
Period size: 96 Copynumber: 2.4 Consensus size: 97
786337 AGACTTGCCA
* * * * * * *
786347 AGTTTAAAAATGGGGTTCGAATATCCCCTTAGAAGAATAGAGGGTGGAGTATCCCTGATGATGGC
1 AGTTTAAAAATGAGGTTGGAGTATCCCTTTAGAAG-ATAGACGGTGGAGCATCCCTGATGATGAC
*
786412 AAATTAAGCAAAAGTAAGATTTAAATCTTAACG
65 AAATTAAGCAAAAATAAGATTTAAATCTTAACG
* * *
786445 AGTTTAAAAATGAGGTTGGGGTATCCCTTTAGAAGATA-ACGTTGGAGCATCCCTGATGGTGACA
1 AGTTTAAAAATGAGGTTGGAGTATCCCTTTAGAAGATAGACGGTGGAGCATCCCTGATGATGACA
* * *
786509 ATTTAAGCAAAAATAAGATTTAAATCTTGATG
66 AATTAAGCAAAAATAAGATTTAAATCTTAACG
* *
786541 AGTTTAAAAATAAGGTTGGAGTATCCCTTCAGAAGA
1 AGTTTAAAAATGAGGTTGGAGTATCCCTTTAGAAGA
786577 ATTGGGTTGG
Statistics
Matches: 115, Mismatches: 17, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
96 82 0.71
97 3 0.03
98 30 0.26
ACGTcount: A:0.37, C:0.12, G:0.23, T:0.28
Consensus pattern (97 bp):
AGTTTAAAAATGAGGTTGGAGTATCCCTTTAGAAGATAGACGGTGGAGCATCCCTGATGATGACA
AATTAAGCAAAAATAAGATTTAAATCTTAACG
Found at i:790092 original size:13 final size:13
Alignment explanation
Indices: 790074--790099 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
790064 ACATTTTATG
790074 ATGTATCGATACA
1 ATGTATCGATACA
790087 ATGTATCGATACA
1 ATGTATCGATACA
790100 TACTGTGTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:790094 original size:33 final size:32
Alignment explanation
Indices: 790052--790119 Score: 100
Period size: 33 Copynumber: 2.1 Consensus size: 32
790042 CGTTACAAGC
**
790052 CAATGTATCGATACATTTTATGATGTATCGATA
1 CAATGTATCGATACATACTATG-TGTATCGATA
*
790085 CAATGTATCGATACATACTGTGTGTATCGATA
1 CAATGTATCGATACATACTATGTGTATCGATA
790117 CAA
1 CAA
790120 GTTTAGCTAC
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
32 13 0.41
33 19 0.59
ACGTcount: A:0.34, C:0.15, G:0.16, T:0.35
Consensus pattern (32 bp):
CAATGTATCGATACATACTATGTGTATCGATA
Found at i:790198 original size:20 final size:21
Alignment explanation
Indices: 790151--790203 Score: 72
Period size: 20 Copynumber: 2.6 Consensus size: 21
790141 GCCAATGACT
**
790151 TGTATCGATACATTCTTTTCA
1 TGTATCGATACATTCTGGTCA
*
790172 AGTATCGATACATT-TGGTCA
1 TGTATCGATACATTCTGGTCA
790192 TGTATCGATACA
1 TGTATCGATACA
790204 ATGTATGGAT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
20 15 0.54
21 13 0.46
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.40
Consensus pattern (21 bp):
TGTATCGATACATTCTGGTCA
Found at i:790234 original size:20 final size:20
Alignment explanation
Indices: 790205--790255 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
790195 ATCGATACAA
* *
790205 TGTATGGATACAATGCAATC
1 TGTATCGATACAATGAAATC
* * *
790225 TGTATCGATACATTTAAATG
1 TGTATCGATACAATGAAATC
790245 TGTATCGATAC
1 TGTATCGATAC
790256 TTTTCAGGGT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.33, C:0.14, G:0.18, T:0.35
Consensus pattern (20 bp):
TGTATCGATACAATGAAATC
Found at i:792535 original size:20 final size:21
Alignment explanation
Indices: 792506--792546 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
792496 TATTTTTGAT
792506 GATGATTTTG-A-TGAAAAAC
1 GATGATTTTGAAGTGAAAAAC
792525 GATGTATTTTGAAGTGAAAAAC
1 GATG-ATTTTGAAGTGAAAAAC
792547 AAGAGTTTTG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 4 0.21
20 6 0.32
21 1 0.05
22 8 0.42
ACGTcount: A:0.41, C:0.05, G:0.22, T:0.32
Consensus pattern (21 bp):
GATGATTTTGAAGTGAAAAAC
Found at i:798887 original size:13 final size:13
Alignment explanation
Indices: 798869--798894 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
798859 ACATTTTATG
798869 ATGTATCGATACA
1 ATGTATCGATACA
798882 ATGTATCGATACA
1 ATGTATCGATACA
798895 TACTGTGTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:798911 original size:32 final size:33
Alignment explanation
Indices: 798847--798914 Score: 93
Period size: 33 Copynumber: 2.1 Consensus size: 33
798837 CGTTACAAGC
* **
798847 CAATGTATTGATACATTTTATGATGTATCGATA
1 CAATGTATCGATACATACTATGATGTATCGATA
*
798880 CAATGTATCGATACATACTGTG-TGTATCGATA
1 CAATGTATCGATACATACTATGATGTATCGATA
798912 CAA
1 CAA
798915 GTTTAGCTAT
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
32 13 0.42
33 18 0.58
ACGTcount: A:0.34, C:0.13, G:0.16, T:0.37
Consensus pattern (33 bp):
CAATGTATCGATACATACTATGATGTATCGATA
Found at i:799376 original size:27 final size:27
Alignment explanation
Indices: 799338--799406 Score: 111
Period size: 27 Copynumber: 2.6 Consensus size: 27
799328 TTAAAAGCAA
* *
799338 GGTTGGAGTATCTCCCTAGAAGAATGG
1 GGTTTGAGTATCCCCCTAGAAGAATGG
*
799365 GGTTTGAGTATCCCCCTGGAAGAATGG
1 GGTTTGAGTATCCCCCTAGAAGAATGG
799392 GGTTTGAGTATCCCC
1 GGTTTGAGTATCCCC
799407 GTAAATAAAA
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 39 1.00
ACGTcount: A:0.22, C:0.19, G:0.32, T:0.28
Consensus pattern (27 bp):
GGTTTGAGTATCCCCCTAGAAGAATGG
Found at i:802534 original size:70 final size:69
Alignment explanation
Indices: 802429--802583 Score: 170
Period size: 70 Copynumber: 2.2 Consensus size: 69
802419 CAAAGAAATG
* * * *
802429 GGGTTGGAGTGT-CCCGACGATGATAATTTGAGCAAAAATAAAATTT-AGATCGTGACATGTTCA
1 GGGTTGGAGTATCCCCGACGATAATAACTTGAGCAAAAATAAAATTTGA-ATCGTGACAAGTTCA
802492 AAAAC
65 AAAAC
* * * * *
802497 TGGGTTGGAGTATCCCCGATGATAATAACTTGGGCAAAAATAAGATTTGAATCTTGACAAGTTTA
1 -GGGTTGGAGTATCCCCGACGATAATAACTTGAGCAAAAATAAAATTTGAATCGTGACAAGTTCA
*
802562 AAAGC
65 AAAAC
*
802567 GAGGCTGGAGTATCCCC
1 G-GGTTGGAGTATCCCC
802584 TCGGAAGAAT
Statistics
Matches: 72, Mismatches: 11, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
69 12 0.17
70 59 0.82
71 1 0.01
ACGTcount: A:0.34, C:0.15, G:0.25, T:0.26
Consensus pattern (69 bp):
GGGTTGGAGTATCCCCGACGATAATAACTTGAGCAAAAATAAAATTTGAATCGTGACAAGTTCAA
AAAC
Found at i:805098 original size:21 final size:20
Alignment explanation
Indices: 805051--805104 Score: 72
Period size: 20 Copynumber: 2.6 Consensus size: 20
805041 TATTTGAGAC
* *
805051 ATGTATCGATACATTCACTT
1 ATGTATCAATACATTCACTA
*
805071 ATGTATCCATACATTCACTA
1 ATGTATCAATACATTCACTA
805091 ATTGTATCAATACA
1 A-TGTATCAATACA
805105 AATCGTAAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
20 19 0.63
21 11 0.37
ACGTcount: A:0.35, C:0.20, G:0.07, T:0.37
Consensus pattern (20 bp):
ATGTATCAATACATTCACTA
Found at i:806616 original size:52 final size:52
Alignment explanation
Indices: 806505--806617 Score: 122
Period size: 52 Copynumber: 2.2 Consensus size: 52
806495 CAATGATATT
* * * * *
806505 AGACTTAAAAATGACAAGGGTGCTAATGTGCTGATTCAAGGCCAGCAACATT
1 AGACTTAAAAATGACAAAGGTGCTAATATGCTGACTCAAGGCCAACAACATC
* * *
806557 GGGCTTAAAAGTGACAAAGGTGCCT-ATATGCTGACTCAAGGCCAACAA-AGTC
1 AGACTTAAAAATGACAAAGGTG-CTAATATGCTGACTCAAGGCCAACAACA-TC
806609 AGACTTAAA
1 AGACTTAAA
806618 GAGATAAAGA
Statistics
Matches: 49, Mismatches: 10, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
51 1 0.02
52 46 0.94
53 2 0.04
ACGTcount: A:0.37, C:0.19, G:0.23, T:0.21
Consensus pattern (52 bp):
AGACTTAAAAATGACAAAGGTGCTAATATGCTGACTCAAGGCCAACAACATC
Found at i:806772 original size:52 final size:53
Alignment explanation
Indices: 806684--807041 Score: 297
Period size: 52 Copynumber: 6.8 Consensus size: 53
806674 TAAGGGTGAG
*
806684 AAGAGTGCCAATGTGCTGATTCACA-GCCAGCAACATTAGACTTAAAGATGA-A
1 AAGAGTGCCAATGTGCTGATTCA-AGGCCAGCGACATTAGACTTAAAGATGATA
* * *
806736 AAGAATGCCAATGTGCTGATTCAAGGCCAGCGACATTAGGCTTAAACATGAT-
1 AAGAGTGCCAATGTGCTGATTCAAGGCCAGCGACATTAGACTTAAAGATGATA
* * ** * *
806788 AAGGGTGCCAATGTGTTGATTCAAGGCCAATGACATTAGGCTTAAAAATGATA
1 AAGAGTGCCAATGTGCTGATTCAAGGCCAGCGACATTAGACTTAAAGATGATA
* * * * * **
806841 GAAGTA-TGCCAATGTGATGATTCAAGGCTAGTGACATTGGGCTT-GGGAATGATA
1 -AAG-AGTGCCAATGTGCTGATTCAAGGCCAGCGACATTAGACTTAAAG-ATGATA
* * * *
806895 AAGA-TGCCAATATGCTGATTCAAGGCTAGCG--ATGACGAACTTAAAGATGACA
1 AAGAGTGCCAATGTGCTGATTCAAGGCCAGCGACATTA-G-ACTTAAAGATGATA
* * * * * * *
806947 AAG-GTGCCAATATGCTAATTCAAGGCTAGTGATATTAGACTT-AAGAAAGAAA
1 AAGAGTGCCAATGTGCTGATTCAAGGCCAGCGACATTAGACTTAAAG-ATGATA
* * *
806999 AAG-GTGCCAATGTGCTAATTTAAGGCCAGCGACATTGGACTTA
1 AAGAGTGCCAATGTGCTGATTCAAGGCCAGCGACATTAGACTTA
807042 GAAAGAGATG
Statistics
Matches: 254, Mismatches: 38, Indels: 27
0.80 0.12 0.08
Matches are distributed among these distances:
50 2 0.01
51 5 0.02
52 196 0.77
53 5 0.02
54 46 0.18
ACGTcount: A:0.36, C:0.16, G:0.24, T:0.24
Consensus pattern (53 bp):
AAGAGTGCCAATGTGCTGATTCAAGGCCAGCGACATTAGACTTAAAGATGATA
Found at i:806884 original size:106 final size:104
Alignment explanation
Indices: 806688--806920 Score: 272
Period size: 106 Copynumber: 2.2 Consensus size: 104
806678 GGTGAGAAGA
* * *
806688 GTGCCAATGTGCTGATTCACA-GCCAGCAACATTAGACTTAAAGATGAAAAGAATGCCAATGTGC
1 GTGCCAATGTGCTGATTCA-AGGCCAACAACATTAGACTTAAAAATGAAAAGAATGCCAATGTGA
*
806752 TGATTCAAGGCCAGCGACATTAGGCTT-AAACATGATAAGG
65 TGATTCAAGGCCAGCGACATTAGGCTTGAAA-ATGATAAAG
* ** * *
806792 GTGCCAATGTGTTGATTCAAGGCCAATGACATTAGGCTTAAAAATGATAGAAGTATGCCAATGTG
1 GTGCCAATGTGCTGATTCAAGGCCAACAACATTAGACTTAAAAATGA-A-AAGAATGCCAATGTG
* * * **
806857 ATGATTCAAGGCTAGTGACATTGGGCTTGGGAATGATAAAG
64 ATGATTCAAGGCCAGCGACATTAGGCTTGAAAATGATAAAG
* *
806898 ATGCCAATATGCTGATTCAAGGC
1 GTGCCAATGTGCTGATTCAAGGC
806921 TAGCGATGAC
Statistics
Matches: 108, Mismatches: 17, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
103 1 0.01
104 39 0.36
105 1 0.01
106 66 0.61
107 1 0.01
ACGTcount: A:0.34, C:0.16, G:0.25, T:0.25
Consensus pattern (104 bp):
GTGCCAATGTGCTGATTCAAGGCCAACAACATTAGACTTAAAAATGAAAAGAATGCCAATGTGAT
GATTCAAGGCCAGCGACATTAGGCTTGAAAATGATAAAG
Found at i:807313 original size:33 final size:32
Alignment explanation
Indices: 807109--807636 Score: 490
Period size: 32 Copynumber: 16.5 Consensus size: 32
807099 CAGAAGGAGA
* *
807109 TGCCACTCACTTGTGTAGGCTTTTA-AGAGGGT
1 TGCCACTGACTTGTGTAGGC-TTTAGAAAGGGT
** * *
807141 TGCCACTGACTTGCATAGGCTTTTGAAAGGGA
1 TGCCACTGACTTGTGTAGGCTTTAGAAAGGGT
*
807173 TGCCACTGACTTGTGTAAGCTTTAGAAAGGGT
1 TGCCACTGACTTGTGTAGGCTTTAGAAAGGGT
*
807205 TGCCACTGACTTGTGTGGGCTTTAGAAAGGGT
1 TGCCACTGACTTGTGTAGGCTTTAGAAAGGGT
*
807237 TGCCACTGACTTGTGTGGGCTTTAGAAA-GGT
1 TGCCACTGACTTGTGTAGGCTTTAGAAAGGGT
* *
807268 TGCCACTGACTTGTGTAGGCTTTGGAAAAGAGT
1 TGCCACTGACTTGTGTAGGCTTTAG-AAAGGGT
* * * *
807301 TGCCA-TAAACTTGTTTGGGCTTTAGAAAAGTGT
1 TGCCACT-GACTTGTGTAGGCTTTAG-AAAGGGT
* * *
807334 TGCCACCGACTTATATAGGCTTTAGAAAAGGGT
1 TGCCACTGACTTGTGTAGGCTTTAG-AAAGGGT
*
807367 TGCCACTGACTTGTGTGGGCCTTT-GAAAGGGT
1 TGCCACTGACTTGTGTAGG-CTTTAGAAAGGGT
* *
807399 TGCCACTGACTTATGTAGGCTTTTG-AAGAGGT
1 TGCCACTGACTTGTGTAGGCTTTAGAAAG-GGT
* *
807431 TGCCACTGACTTGTAT-GGCTTTTAG-AATGGT
1 TGCCACTGACTTGTGTAGGC-TTTAGAAAGGGT
*
807462 TGCCACTGACTTGTAT-GGACTTTAGAAA-GGT
1 TGCCACTGACTTGTGTAGG-CTTTAGAAAGGGT
* * * *
807493 TGCCACTGACTTTTCT-GCACTTTAGAAGGGGT
1 TGCCACTGACTTGTGTAG-GCTTTAGAAAGGGT
* * *
807525 TGCCA-TCGACTTGTGTGGGCTTTAAAAAAAGGT
1 TGCCACT-GACTTGTGTAGGCTTT-AGAAAGGGT
*** * *
807558 TGATGCTAACTTGTGTGGGCTTTAGAAAGGGT
1 TGCCACTGACTTGTGTAGGCTTTAGAAAGGGT
* *
807590 TGCCA-TCGACTTGTGT-GGACTTTTG-AGGGGT
1 TGCCACT-GACTTGTGTAGG-CTTTAGAAAGGGT
807621 TGCCACTGACTTGTGT
1 TGCCACTGACTTGTGT
807637 GGAGAAGGTT
Statistics
Matches: 417, Mismatches: 59, Indels: 41
0.81 0.11 0.08
Matches are distributed among these distances:
31 114 0.27
32 204 0.49
33 94 0.23
34 5 0.01
ACGTcount: A:0.22, C:0.16, G:0.29, T:0.33
Consensus pattern (32 bp):
TGCCACTGACTTGTGTAGGCTTTAGAAAGGGT
Found at i:807712 original size:32 final size:32
Alignment explanation
Indices: 807676--807778 Score: 91
Period size: 32 Copynumber: 3.2 Consensus size: 32
807666 TTCAGAGAAG
** **
807676 GGTGCCACGAAGTTGTGGACTTTGAAGAAAAA
1 GGTGCCACGAAGTCATGGACTTAAAAGAAAAA
* *
807708 GGTGCCATGAAGTCATGGACTTAAAAGGAAAA
1 GGTGCCACGAAGTCATGGACTTAAAAGAAAAA
* * * * *
807740 GGTGCCA-TAGAGTTATTGACGTAAAAGGAAAA
1 GGTGCCACGA-AGTCATGGACTTAAAAGAAAAA
807772 GGTGCCA
1 GGTGCCA
807779 TAGAGATGTG
Statistics
Matches: 60, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
31 1 0.02
32 59 0.98
ACGTcount: A:0.37, C:0.13, G:0.30, T:0.20
Consensus pattern (32 bp):
GGTGCCACGAAGTCATGGACTTAAAAGAAAAA
Found at i:807779 original size:32 final size:32
Alignment explanation
Indices: 807704--807783 Score: 117
Period size: 32 Copynumber: 2.5 Consensus size: 32
807694 ACTTTGAAGA
*
807704 AAAAGGTGCCAT-GAAGTCATGGACTTAAAAGG
1 AAAAGGTGCCATAG-AGTCATGGACGTAAAAGG
* *
807736 AAAAGGTGCCATAGAGTTATTGACGTAAAAGG
1 AAAAGGTGCCATAGAGTCATGGACGTAAAAGG
807768 AAAAGGTGCCATAGAG
1 AAAAGGTGCCATAGAG
807784 ATGTGTTAAA
Statistics
Matches: 44, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
32 43 0.98
33 1 0.02
ACGTcount: A:0.41, C:0.11, G:0.29, T:0.19
Consensus pattern (32 bp):
AAAAGGTGCCATAGAGTCATGGACGTAAAAGG
Found at i:807830 original size:34 final size:34
Alignment explanation
Indices: 807791--807856 Score: 87
Period size: 34 Copynumber: 1.9 Consensus size: 34
807781 GAGATGTGTT
*
807791 AAAAAGGTGCCACAAAGTTATGAACTTTGAAAAA
1 AAAAAGGTACCACAAAGTTATGAACTTTGAAAAA
* * * *
807825 AAAAAGGTACCATAGAGTTGTGGACTTTGAAA
1 AAAAAGGTACCACAAAGTTATGAACTTTGAAA
807857 GGGTGCCACG
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
34 27 1.00
ACGTcount: A:0.45, C:0.11, G:0.21, T:0.23
Consensus pattern (34 bp):
AAAAAGGTACCACAAAGTTATGAACTTTGAAAAA
Found at i:807917 original size:27 final size:27
Alignment explanation
Indices: 807839--807990 Score: 161
Period size: 27 Copynumber: 5.6 Consensus size: 27
807829 AGGTACCATA
* *
807839 GAGTTGTGGACTTTGAAAGGGTGCCACG
1 GAGTTGAGGAC-TTAAAAGGGTGCCACG
807867 GAGTT-ATGGAC-T-AAAGGGTGCCACG
1 GAGTTGA-GGACTTAAAAGGGTGCCACG
807892 GAGTTGAGGACTTAAAAGGGTGCCACG
1 GAGTTGAGGACTTAAAAGGGTGCCACG
*
807919 AAGTTGAGGACTTTGAAAA-GGTGCCACG
1 GAGTTGAGGAC-TT-AAAAGGGTGCCACG
* * *
807947 GAGTTGTGGATTTAAAAGAGTGCCACG
1 GAGTTGAGGACTTAAAAGGGTGCCACG
*
807974 GAATTGTA-GACTTAAAA
1 GAGTTG-AGGACTTAAAA
807991 AGAAAAAGGT
Statistics
Matches: 107, Mismatches: 9, Indels: 17
0.80 0.07 0.13
Matches are distributed among these distances:
25 22 0.21
26 7 0.07
27 46 0.43
28 28 0.26
29 4 0.04
ACGTcount: A:0.30, C:0.13, G:0.34, T:0.23
Consensus pattern (27 bp):
GAGTTGAGGACTTAAAAGGGTGCCACG
Found at i:807932 original size:80 final size:82
Alignment explanation
Indices: 807840--807990 Score: 218
Period size: 80 Copynumber: 1.9 Consensus size: 82
807830 GGTACCATAG
* * * *
807840 AGTTGTGGACTTTGAAAGGGTGCCACGGAGTTATGGA-CT-AAAGGGTGCCACGGAGTTG-AGGA
1 AGTTGAGGACTTTGAAAAGGTGCCACGGAGTTATGGATCTAAAAGAGTGCCACGGAATTGTA-GA
807902 CTTAAAAGGGTGCCACGA
65 CTTAAAAGGGTGCCACGA
* *
807920 AGTTGAGGACTTTGAAAAGGTGCCACGGAGTTGTGGATTTAAAAGAGTGCCACGGAATTGTAGAC
1 AGTTGAGGACTTTGAAAAGGTGCCACGGAGTTATGGATCTAAAAGAGTGCCACGGAATTGTAGAC
807985 TTAAAA
66 TTAAAA
807991 AGAAAAAGGT
Statistics
Matches: 62, Mismatches: 6, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
80 34 0.55
81 1 0.02
82 26 0.42
83 1 0.02
ACGTcount: A:0.30, C:0.13, G:0.33, T:0.23
Consensus pattern (82 bp):
AGTTGAGGACTTTGAAAAGGTGCCACGGAGTTATGGATCTAAAAGAGTGCCACGGAATTGTAGAC
TTAAAAGGGTGCCACGA
Found at i:807962 original size:55 final size:52
Alignment explanation
Indices: 807839--807973 Score: 164
Period size: 55 Copynumber: 2.5 Consensus size: 52
807829 AGGTACCATA
* * *
807839 GAGTTGTGGACTTTGAAAGGGTGCCACGGAGTTATGGACTAAAGGGTGCCACG
1 GAGTTGTGGA-TTTAAAAGGGTGCCACGAAGTTATGGACTAAAAGGTGCCACG
* *
807892 GAGTTGAGGACTTAAAAGGGTGCCACGAAGTTGA-GGACTTTGAAAAGGTGCCACG
1 GAGTTGTGGATTTAAAAGGGTGCCACGAAGTT-ATGGAC--T-AAAAGGTGCCACG
*
807947 GAGTTGTGGATTTAAAAGAGTGCCACG
1 GAGTTGTGGATTTAAAAGGGTGCCACG
807974 GAATTGTAGA
Statistics
Matches: 70, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
52 23 0.33
53 10 0.14
54 1 0.01
55 36 0.51
ACGTcount: A:0.28, C:0.14, G:0.36, T:0.22
Consensus pattern (52 bp):
GAGTTGTGGATTTAAAAGGGTGCCACGAAGTTATGGACTAAAAGGTGCCACG
Found at i:807986 original size:55 final size:54
Alignment explanation
Indices: 807839--807992 Score: 163
Period size: 55 Copynumber: 2.9 Consensus size: 54
807829 AGGTACCATA
* * * * *
807839 GAGTTGTGGACTTTGAAAGGGTGCCACGGAGTTATGGAC--TAAAGGGTGCCACG
1 GAGTTGTGGA-TTTAAAAGGGTGCCACGGAATTGTAGACTTTAAAAGGTGCCACG
* *
807892 GAGTTGAGGACTTAAAAGGGTGCCAC-GAAGTTG-AGGACTTTGAAAAGGTGCCACG
1 GAGTTGTGGATTTAAAAGGGTGCCACGGAA-TTGTA-GACTTT-AAAAGGTGCCACG
* *
807947 GAGTTGTGGATTTAAAAGAGTGCCACGGAATTGTAGACTTAAAAAG
1 GAGTTGTGGATTTAAAAGGGTGCCACGGAATTGTAGACTTTAAAAG
807993 AAAAAGGTGC
Statistics
Matches: 83, Mismatches: 11, Indels: 13
0.78 0.10 0.12
Matches are distributed among these distances:
51 2 0.02
52 19 0.23
53 9 0.11
54 6 0.07
55 43 0.52
56 4 0.05
ACGTcount: A:0.31, C:0.13, G:0.34, T:0.23
Consensus pattern (54 bp):
GAGTTGTGGATTTAAAAGGGTGCCACGGAATTGTAGACTTTAAAAGGTGCCACG
Found at i:808019 original size:33 final size:34
Alignment explanation
Indices: 807982--808053 Score: 110
Period size: 34 Copynumber: 2.1 Consensus size: 34
807972 CGGAATTGTA
* *
807982 GACTTAAAAAG-AAAAAGGTGCAATGGAGTTCTG
1 GACTTAAAAAGAAAAAAGGTGCAATAGAGTTATG
*
808015 GACTTAAAAAGAAAAAAGGTGCTATAGAGTTATG
1 GACTTAAAAAGAAAAAAGGTGCAATAGAGTTATG
808049 GACTT
1 GACTT
808054 TGAAAAGAGG
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
33 11 0.31
34 24 0.69
ACGTcount: A:0.43, C:0.08, G:0.25, T:0.24
Consensus pattern (34 bp):
GACTTAAAAAGAAAAAAGGTGCAATAGAGTTATG
Found at i:808102 original size:29 final size:30
Alignment explanation
Indices: 808047--808113 Score: 109
Period size: 29 Copynumber: 2.3 Consensus size: 30
808037 TATAGAGTTA
808047 TGGACTTTGAAAAGAGGTGCCACTGAGTCG
1 TGGACTTTGAAAAGAGGTGCCACTGAGTCG
* *
808077 TGGACTTTGAGAAG-GGTGCCATTGAGTCG
1 TGGACTTTGAAAAGAGGTGCCACTGAGTCG
808106 TGGACTTT
1 TGGACTTT
808114 TGGAAAAAGA
Statistics
Matches: 35, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
29 22 0.63
30 13 0.37
ACGTcount: A:0.22, C:0.15, G:0.34, T:0.28
Consensus pattern (30 bp):
TGGACTTTGAAAAGAGGTGCCACTGAGTCG
Found at i:812465 original size:9 final size:9
Alignment explanation
Indices: 812447--812500 Score: 56
Period size: 9 Copynumber: 6.0 Consensus size: 9
812437 CCATTTCATA
*
812447 TTTTTTTTC
1 TTTTTCTTC
812456 TTTTTCTTC
1 TTTTTCTTC
812465 TTTTTCTTC
1 TTTTTCTTC
*
812474 -CTTTCTTC
1 TTTTTCTTC
*
812482 TTCTTCTTCC
1 TTTTTCTT-C
*
812492 TCTTTCTTC
1 TTTTTCTTC
812501 CCCACCAATA
Statistics
Matches: 37, Mismatches: 6, Indels: 4
0.79 0.13 0.09
Matches are distributed among these distances:
8 7 0.19
9 23 0.62
10 7 0.19
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (9 bp):
TTTTTCTTC
Found at i:812478 original size:17 final size:17
Alignment explanation
Indices: 812450--812492 Score: 63
Period size: 17 Copynumber: 2.6 Consensus size: 17
812440 TTTCATATTT
812450 TTTTTCTT--TTTCTTC
1 TTTTTCTTCCTTTCTTC
812465 TTTTTCTTCCTTTCTTC
1 TTTTTCTTCCTTTCTTC
*
812482 TTCTTCTTCCT
1 TTTTTCTTCCT
812493 CTTTCTTCCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
15 8 0.32
17 17 0.68
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (17 bp):
TTTTTCTTCCTTTCTTC
Found at i:812495 original size:23 final size:23
Alignment explanation
Indices: 812452--812495 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
812442 TCATATTTTT
* **
812452 TTTCTTTTTCTTCTTTTTCTTCC
1 TTTCTTCTTCTTCTTCCTCTTCC
812475 TTTCTTCTTCTTCTTCCTCTT
1 TTTCTTCTTCTTCTTCCTCTT
812496 TCTTCCCCAC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (23 bp):
TTTCTTCTTCTTCTTCCTCTTCC
Found at i:813473 original size:28 final size:28
Alignment explanation
Indices: 813431--813752 Score: 351
Period size: 28 Copynumber: 11.4 Consensus size: 28
813421 AACCTGTGTA
* * *
813431 GGCTTTGAAAGGATGCCACTAACTTATG
1 GGCTTTGAAAAGATGCCACTGACTTGTG
* * *
813459 GGCTTTGAAAAGATGCTACTTACTTATG
1 GGCTTTGAAAAGATGCCACTGACTTGTG
* * * *
813487 GACTTT-AAAAGGCTGCCACTCACTTATG
1 GGCTTTGAAAA-GATGCCACTGACTTGTG
* *
813515 GGCTTT-AAAAGATACCATTGACTTGTG
1 GGCTTTGAAAAGATGCCACTGACTTGTG
* *
813542 GGCTTTAAAAAGGTGCCACTGACTTGTG
1 GGCTTTGAAAAGATGCCACTGACTTGTG
*
813570 GGCTTTGAAAAGGGTTGCCACTGACTTGTG
1 GGCTTTGAAAA--GATGCCACTGACTTGTG
* *
813600 GGCTTTGAAAAGAGTTGTCATTGACTTGTG
1 GGCTTTGAAAAGA--TGCCACTGACTTGTG
* * *
813630 AGCTTAGAAAAGATGCCATTGACTTGTG
1 GGCTTTGAAAAGATGCCACTGACTTGTG
*
813658 GGATTTGAAAAGATGCCACTGACTTGTG
1 GGCTTTGAAAAGATGCCACTGACTTGTG
813686 GGCTTTGAAAAGATGCCACTGACTTGTG
1 GGCTTTGAAAAGATGCCACTGACTTGTG
* * *
813714 GGCTTTGAGAAGGTGCTACTGACTTGTG
1 GGCTTTGAAAAGATGCCACTGACTTGTG
* *
813742 GGTTTTCAAAA
1 GGCTTTGAAAA
813753 AGAAGGCATA
Statistics
Matches: 253, Mismatches: 35, Indels: 12
0.84 0.12 0.04
Matches are distributed among these distances:
27 22 0.09
28 180 0.71
30 51 0.20
ACGTcount: A:0.26, C:0.16, G:0.27, T:0.31
Consensus pattern (28 bp):
GGCTTTGAAAAGATGCCACTGACTTGTG
Found at i:813962 original size:28 final size:28
Alignment explanation
Indices: 813925--814771 Score: 720
Period size: 28 Copynumber: 30.0 Consensus size: 28
813915 TAAAAGGAGT
813925 TGCCACTGACTTGTGGGCTTTAAAAAGA
1 TGCCACTGACTTGTGGGCTTTAAAAAGA
* *
813953 TGCCATTGACTTGTGGGCTTTGAGAAAG-
1 TGCCACTGACTTGTGGGCTTT-AAAAAGA
* *
813981 TGCCACTAACTTGT-GGCTTTAAGAAGA
1 TGCCACTGACTTGTGGGCTTTAAAAAGA
* * *
814008 TGCCACTAACTTGTGGGCTTTGAAAATGGT
1 TGCCACTGACTTGTGGGCTTT-AAAA-AGA
* * *
814038 TACCACTGACTTGTGGGCTTTGAAATGA
1 TGCCACTGACTTGTGGGCTTTAAAAAGA
* * *
814066 TGCCACTAACTTGTAGGCTTT-GAAAGA
1 TGCCACTGACTTGTGGGCTTTAAAAAGA
* * * * *
814093 TGCCACTGACTTATGGGTTTTGAGAAGT
1 TGCCACTGACTTGTGGGCTTTAAAAAGA
* * **
814121 TGCCACTGGCTTATGGGCTTTTAGGAA-A
1 TGCCACTGACTTGTGGGC-TTTAAAAAGA
* * *
814149 TGCCACTAACTTATGGGCTTTGAAAAGAGT
1 TGCCACTGACTTGTGGGCTTT-AAAA-AGA
* *
814179 TGCCACTGACTTGTGGGCTTTGAAATGA
1 TGCCACTGACTTGTGGGCTTTAAAAAGA
* * *
814207 TACCACTGACTTGTGGGCTTTGAAATGA
1 TGCCACTGACTTGTGGGCTTTAAAAAGA
* * * *
814235 TGCCACTAACTTGTAGGCTTTGAAAATA
1 TGCCACTGACTTGTGGGCTTTAAAAAGA
* * * * *
814263 TGCCACTGACTTATGGGTTTTGAGAAGT
1 TGCCACTGACTTGTGGGCTTTAAAAAGA
* **
814291 TGCCACT-AGCTTATGGGCTTTTAGGAAG-
1 TGCCACTGA-CTTGTGGGC-TTTAAAAAGA
* * * *
814319 TGCCACTAACTTATGGGCTTTGAAAAGGGC
1 TGCCACTGACTTGTGGGCTTT-AAAA-AGA
* * *
814349 TGCCATTGACTTGTGGGCTTTGAAATGA
1 TGCCACTGACTTGTGGGCTTTAAAAAGA
* *
814377 TACCACTGACTTGTGGGCTTTAAAAGGA
1 TGCCACTGACTTGTGGGCTTTAAAAAGA
*
814405 TGCCACTGACTTGGGGGCTTT-AAAAGA
1 TGCCACTGACTTGTGGGCTTTAAAAAGA
* *
814432 GTGCCACTAACTTGTGGGCTTTGAAAAGA
1 -TGCCACTGACTTGTGGGCTTTAAAAAGA
* * *
814461 TGCCACTGACTTGTTGCCTTTTAGAAAG-
1 TGCCACTGACTTGTGGGC-TTTAAAAAGA
* * * * *
814489 TGCCACTAACTTGTGTGCTTTGAGAAGG
1 TGCCACTGACTTGTGGGCTTTAAAAAGA
* * *
814517 TGCAACTAACTTGTGGGCTTTGAAAATGA
1 TGCCACTGACTTGTGGGCTTT-AAAAAGA
* *
814546 TTGCCACTAACTTGTGGGCTTTAAAATGA
1 -TGCCACTGACTTGTGGGCTTTAAAAAGA
* * *
814575 TGCCACTAACTTGTGGCCTTTAAAATGA
1 TGCCACTGACTTGTGGGCTTTAAAAAGA
* * * *
814603 TGCCACTGACTTGTAGGCTTTGAGAAGG
1 TGCCACTGACTTGTGGGCTTTAAAAAGA
* * * *
814631 TGCCACTGACTTATGGGCCTTGAAAAGG
1 TGCCACTGACTTGTGGGCTTTAAAAAGA
*
814659 TGCCACTGACTTGTGGGCTTTAAAAAGGGT
1 TGCCACTGACTTGTGGGCTTTAAAAA--GA
*
814689 TGCCACTGACTTGTGGGCTTTAAAAATA
1 TGCCACTGACTTGTGGGCTTTAAAAAGA
* **
814717 TGCCACTGACTTGTGGGTTTTGGAAAGA
1 TGCCACTGACTTGTGGGCTTTAAAAAGA
* * *
814745 TGTCACTGACTTGTGGGTTTTGAAAAG
1 TGCCACTGACTTGTGGGCTTTAAAAAG
814772 CAGTCGTATT
Statistics
Matches: 677, Mismatches: 118, Indels: 48
0.80 0.14 0.06
Matches are distributed among these distances:
26 4 0.01
27 59 0.09
28 454 0.67
29 56 0.08
30 104 0.15
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.31
Consensus pattern (28 bp):
TGCCACTGACTTGTGGGCTTTAAAAAGA
Found at i:814306 original size:198 final size:196
Alignment explanation
Indices: 813922--814771 Score: 766
Period size: 198 Copynumber: 4.3 Consensus size: 196
813912 CCTTAAAAGG
* * * * *
813922 AGTTGCCACTGACTTGTGGGCTTTAAAAAGA-TGCCATTGACTTGTGGGCTTTGAGAAAG-TGCC
1 AGTTGCCACTAACTTATGGGCTTTAGAAAGAGTGCCACTAACTTGTGGGCTTTGA-AAAGATGCC
* * * *
813985 ACTAACTTGT-GGCTTTAAGAA-GATGCCACTAACTTGTGGGCTTTGAAAATGGTTACCACTGAC
65 ACTAACTTGTGGGCTTTAA-AATGATGCCACTGACTTGTGGGCTTTG-AAAT-GATGCCACTAAC
* * * *
814048 TTGTGGGCTTTGAAATGATGCCACTAACTTGTAGGCTTTGA-AAGATGCCACT-GACTTATGGGT
127 TTGTGGGCTTTGAAAAGATGCCACTGACTTGTGGGTTTTGAGAAG-TGCCACTAG-CTTATGGGT
814111 TTTGAGA
190 TTTGAGA
** * *
814118 AGTTGCCACTGGCTTATGGGCTTTTAGGAA-A-TGCCACTAACTTATGGGCTTTGAAAAGAGTTG
1 AGTTGCCACTAACTTATGGGC-TTTAGAAAGAGTGCCACTAACTTGTGGGCTTTGAAAAGA--TG
* * *
814181 CCACTGACTTGTGGGCTTTGAAATGATACCACTGACTTGTGGGCTTTGAAATGATGCCACTAACT
63 CCACTAACTTGTGGGCTTTAAAATGATGCCACTGACTTGTGGGCTTTGAAATGATGCCACTAACT
* * *
814246 TGTAGGCTTTGAAAATATGCCACTGACTTATGGGTTTTGAGAAGTTGCCACTAGCTTATGGGCTT
128 TGTGGGCTTTGAAAAGATGCCACTGACTTGTGGGTTTTGAGAAG-TGCCACTAGCTTATGGG-TT
814311 TT-AGGA
191 TTGA-GA
* * * * *
814317 AG-TGCCACTAACTTATGGGCTTT-GAAAAGGGCTGCCATTGACTTGTGGGCTTTGAAATGATAC
1 AGTTGCCACTAACTTATGGGCTTTAG-AAAGAG-TGCCACTAACTTGTGGGCTTTGAAAAGATGC
* * * *
814380 CACTGACTTGTGGGCTTTAAAAGGATGCCACTGACTTGGGGGCTTT-AAAAGAGTGCCACTAACT
64 CACTAACTTGTGGGCTTTAAAATGATGCCACTGACTTGTGGGCTTTGAAATGA-TGCCACTAACT
** * * * *
814444 TGTGGGCTTTGAAAAGATGCCACTGACTTGTTGCCTTTT-AGAAAGTGCCACTAACTTGTGTGCT
128 TGTGGGCTTTGAAAAGATGCCACTGACTTG-TGGGTTTTGAG-AAGTGCCACTAGCTTATGGGTT
814508 TTGAGA
191 TTGAGA
* * * *
814514 AGGTGCAACTAACTTGTGGGCTTT-GAAAATGATTGCCACTAACTTGTGGGCTTT-AAAATGATG
1 AGTTGCCACTAACTTATGGGCTTTAG-AAA-GAGTGCCACTAACTTGTGGGCTTTGAAAA-GATG
* * * *
814577 CCACTAACTTGTGGCCTTTAAAATGATGCCACTGACTTGTAGGCTTTGAGAA-GGTGCCACTGAC
63 CCACTAACTTGTGGGCTTTAAAATGATGCCACTGACTTGTGGGCTTTGA-AATGATGCCACTAAC
* * * * * * *
814641 TTATGGGCCTTGAAAAGGTGCCACTGACTTGTGGGCTTTAAAAAGGGTTGCCACT-GACTTGTGG
127 TTGTGGGCTTTGAAAAGATGCCACTGACTTGTGGGTTTTGAGAA--G-TGCCACTAG-CTTATGG
* *
814705 GCTTT-AAA
188 GTTTTGAGA
* * * * * * * *
814713 AATATGCCACTGACTTGTGGGTTTTGGAAAGA-TGTCACTGACTTGTGGGTTTTGAAAAG
1 AGT-TGCCACTAACTTATGGGCTTTAGAAAGAGTGCCACTAACTTGTGGGCTTTGAAAAG
814772 CAGTCGTATT
Statistics
Matches: 545, Mismatches: 78, Indels: 60
0.80 0.11 0.09
Matches are distributed among these distances:
195 4 0.01
196 41 0.08
197 76 0.14
198 298 0.55
199 60 0.11
200 65 0.12
201 1 0.00
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.31
Consensus pattern (196 bp):
AGTTGCCACTAACTTATGGGCTTTAGAAAGAGTGCCACTAACTTGTGGGCTTTGAAAAGATGCCA
CTAACTTGTGGGCTTTAAAATGATGCCACTGACTTGTGGGCTTTGAAATGATGCCACTAACTTGT
GGGCTTTGAAAAGATGCCACTGACTTGTGGGTTTTGAGAAGTGCCACTAGCTTATGGGTTTTGAG
A
Found at i:814315 original size:170 final size:170
Alignment explanation
Indices: 813925--814771 Score: 990
Period size: 170 Copynumber: 5.0 Consensus size: 170
813915 TAAAAGGAGT
* * * * *
813925 TGCCACTGACTTGTGGGCTTTAAAAAGATGCCATTGACTTGTGGGCTTTGA-GAAAGTGCCACTA
1 TGCCACTGACTTGTGGGCTTTGAGAAGATGCCACTGACTTATGGGCTTTTAGGAAAGTGCCACTA
* *
813989 ACTTGT-GGCTTT-AAGAAGA-TGCCACTAACTTGTGGGCTTTGAAAATGGTTACCACTGACTTG
66 ACTTGTGGGCTTTGAA-AAGAGTGCCACTGACTTGTGGGCTTTG-AAAT-GATACCACTGACTTG
814051 TGGGCTTTGAAATGATGCCACTAACTTGTAGGCTTTG-AAAGA
128 TGGGCTTTGAAATGATGCCACTAACTTGTAGGCTTTGAAAAGA
* * * *
814093 TGCCACTGACTTATGGGTTTTGAGAAGTTGCCACTGGCTTATGGGCTTTTAGGAAA-TGCCACTA
1 TGCCACTGACTTGTGGGCTTTGAGAAGATGCCACTGACTTATGGGCTTTTAGGAAAGTGCCACTA
*
814157 ACTTATGGGCTTTGAAAAGAGTTGCCACTGACTTGTGGGCTTTGAAATGATACCACTGACTTGTG
66 ACTTGTGGGCTTTGAAAAGAG-TGCCACTGACTTGTGGGCTTTGAAATGATACCACTGACTTGTG
*
814222 GGCTTTGAAATGATGCCACTAACTTGTAGGCTTTGAAAATA
130 GGCTTTGAAATGATGCCACTAACTTGTAGGCTTTGAAAAGA
* * *
814263 TGCCACTGACTTATGGGTTTTGAGAAGTTGCCACT-AGCTTATGGGCTTTTAGG-AAGTGCCACT
1 TGCCACTGACTTGTGGGCTTTGAGAAGATGCCACTGA-CTTATGGGCTTTTAGGAAAGTGCCACT
* * *
814326 AACTTATGGGCTTTGAAAAGGGCTGCCATTGACTTGTGGGCTTTGAAATGATACCACTGACTTGT
65 AACTTGTGGGCTTTGAAAAGAG-TGCCACTGACTTGTGGGCTTTGAAATGATACCACTGACTTGT
* * * **
814391 GGGCTTTAAAAGGATGCCACTGACTTGGGGGCTTT-AAAAGA
129 GGGCTTTGAAATGATGCCACTAACTTGTAGGCTTTGAAAAGA
* * * * *
814432 GTGCCACTAACTTGTGGGCTTTGAAAAGATGCCACTGACTTGTTGCCTTTTA-GAAAGTGCCACT
1 -TGCCACTGACTTGTGGGCTTTGAGAAGATGCCACTGACTTATGGGCTTTTAGGAAAGTGCCACT
* * * * * *
814496 AACTTGTGTGCTTTGAGAAG-GTGCAACTAACTTGTGGGCTTTGAAAATGATTGCCACTAACTTG
65 AACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTG-AAATGA-TACCACTGACTTG
*
814560 TGGGCTTTAAAATGATGCCACTAACTTGT-GGCCTTT-AAAATGA
128 TGGGCTTTGAAATGATGCCACTAACTTGTAGG-CTTTGAAAA-GA
* * * *
814603 TGCCACTGACTTGTAGGCTTTGAGAAGGTGCCACTGACTTATGGGC-CTT-GAAAAGGTGCCACT
1 TGCCACTGACTTGTGGGCTTTGAGAAGATGCCACTGACTTATGGGCTTTTAGGAAA-GTGCCACT
* * * * *
814666 GACTTGTGGGCTTTAAAAAGGGTTGCCACTGACTTGTGGGCTTTAAAAAT-ATGCCACTGACTTG
65 AACTTGTGGGCTTTGAAAAGAG-TGCCACTGACTTGTGGGCTTT-GAAATGATACCACTGACTTG
* * * * *
814730 TGGGTTTTGGAAA-GATGTCACTGACTTGTGGGTTTTGAAAAG
128 TGGGCTTT-GAAATGATGCCACTAACTTGTAGGCTTTGAAAAG
814772 CAGTCGTATT
Statistics
Matches: 592, Mismatches: 64, Indels: 44
0.85 0.09 0.06
Matches are distributed among these distances:
168 74 0.12
169 87 0.15
170 373 0.63
171 35 0.06
172 23 0.04
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.31
Consensus pattern (170 bp):
TGCCACTGACTTGTGGGCTTTGAGAAGATGCCACTGACTTATGGGCTTTTAGGAAAGTGCCACTA
ACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAATGATACCACTGACTTGTGG
GCTTTGAAATGATGCCACTAACTTGTAGGCTTTGAAAAGA
Found at i:814692 original size:142 final size:139
Alignment explanation
Indices: 813925--814769 Score: 875
Period size: 142 Copynumber: 6.0 Consensus size: 139
813915 TAAAAGGAGT
* * *
813925 TGCCACTGACTTGTGGGCTTTAAAAAGATGCCATTGACTTGTGGGCTTTGAGAAAG-TGCCACTA
1 TGCCACTGACTTGTGGGCTTTGAAAAGATGCCACTGACTTGTGGGCTTTGA-AAAGTTGCCACTG
* *
813989 ACTTGT-GGCTTTAAGAAGATGCCACTAACTTGTGGGCTTTGAAAATGGTTACCACTGACTTGTG
65 ACTTGTGGGCTTTAA-AAGATGCCACTAACTTGTGGGCTTTGAAAA--GATGCCACTGACTTGTG
*
814053 GGCTTTGAAATGA
127 GGCTTTGAAATGG
* * * * * *
814066 TGCCACTAACTTGTAGGCTTTG-AAAGATGCCACTGACTTATGGGTTTTGAGAAGTTGCCACTGG
1 TGCCACTGACTTGTGGGCTTTGAAAAGATGCCACTGACTTGTGGGCTTTGAAAAGTTGCCACTGA
* * *
814130 CTTATGGGCTTTTAGGAA-ATGCCACTAACTTATGGGCTTTGAAAAGAGTTGCCACTGACTTGTG
66 CTTGTGGGC-TTTA-AAAGATGCCACTAACTTGTGGGCTTTGAAAAGA--TGCCACTGACTTGTG
*
814194 GGCTTTGAAATGA
127 GGCTTTGAAATGG
* * * *
814207 TACCACTGACTTGTGGGCTTTGAAATGATGCCACTAACTTGTAGGCTTTGAAAA-TATGCCACTG
1 TGCCACTGACTTGTGGGCTTTGAAAAGATGCCACTGACTTGTGGGCTTTGAAAAGT-TGCCACTG
* * * * * * * * * *
814271 ACTTATGGGTTTTGAGAAGTTGCCACTAGCTTATGGGCTTTTAGGAAG-TGCCACTAACTTATGG
65 ACTTGTGGGCTTT-AAAAGATGCCACTAACTTGTGGGCTTTGA-AAAGATGCCACTGACTTGTGG
*
814335 GCTTTGAAAAGGG
128 GCTTTG-AAATGG
* * * *
814348 CTGCCATTGACTTGTGGGCTTTGAAATGATACCACTGACTTGTGGGCTTT-AAAAGGATGCCACT
1 -TGCCACTGACTTGTGGGCTTTGAAAAGATGCCACTGACTTGTGGGCTTTGAAAA-GTTGCCACT
* *
814412 GACTTGGGGGCTTTAAAAGAGTGCCACTAACTTGTGGGCTTTGAAAAGATGCCACTGACTTGTTG
64 GACTTGTGGGCTTTAAAAGA-TGCCACTAACTTGTGGGCTTTGAAAAGATGCCACTGACTTGTGG
*
814477 CCTTTTAGAAA--G
128 GC-TTT-GAAATGG
* * * * * *
814489 TGCCACTAACTTGTGTGCTTTGAGAAGGTGCAACTAACTTGTGGGCTTTGAAAATGATTGCCACT
1 TGCCACTGACTTGTGGGCTTTGAAAAGATGCCACTGACTTGTGGGCTTTGAAAA-G-TTGCCACT
* * *
814554 AACTTGTGGGCTTTAAAATGATGCCACTAACTTGTGGCCTTT-AAAATGATGCCACTGACTTGTA
64 GACTTGTGGGCTTTAAAA-GATGCCACTAACTTGTGGGCTTTGAAAA-GATGCCACTGACTTGTG
814618 GGCTTTGAGAA-GG
127 GGCTTTGA-AATGG
* * * *
814631 TGCCACTGACTTATGGGCCTTGAAAAGGTGCCACTGACTTGTGGGCTTTAAAAAGGGTTGCCACT
1 TGCCACTGACTTGTGGGCTTTGAAAAGATGCCACTGACTTGTGGGCTTTGAAAA--GTTGCCACT
* * * * *
814696 GACTTGTGGGCTTTAAAAATATGCCACTGACTTGTGGGTTTTGGAAAGATGTCACTGACTTGTGG
64 GACTTGTGGGCTTT-AAAAGATGCCACTAACTTGTGGGCTTTGAAAAGATGCCACTGACTTGTGG
*
814761 GTTTTGAAA
128 GCTTTGAAA
814770 AGCAGTCGTA
Statistics
Matches: 590, Mismatches: 86, Indels: 56
0.81 0.12 0.08
Matches are distributed among these distances:
139 4 0.01
140 98 0.17
141 133 0.23
142 335 0.57
143 19 0.03
144 1 0.00
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.31
Consensus pattern (139 bp):
TGCCACTGACTTGTGGGCTTTGAAAAGATGCCACTGACTTGTGGGCTTTGAAAAGTTGCCACTGA
CTTGTGGGCTTTAAAAGATGCCACTAACTTGTGGGCTTTGAAAAGATGCCACTGACTTGTGGGCT
TTGAAATGG
Found at i:816989 original size:13 final size:13
Alignment explanation
Indices: 816971--817027 Score: 60
Period size: 13 Copynumber: 3.9 Consensus size: 13
816961 TTCAACAATT
816971 TGTATCGATACAA
1 TGTATCGATACAA
816984 TGTATCGATACATAA
1 TGTATCGATAC--AA
816999 GTGTTATATCGATACAA
1 -TG---TATCGATACAA
817016 TGTATCGATACA
1 TGTATCGATACA
817028 TAAGTTTTAT
Statistics
Matches: 38, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
13 21 0.55
15 2 0.05
16 4 0.11
17 2 0.05
19 9 0.24
ACGTcount: A:0.37, C:0.14, G:0.16, T:0.33
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:817010 original size:19 final size:19
Alignment explanation
Indices: 816986--817046 Score: 71
Period size: 19 Copynumber: 3.5 Consensus size: 19
816976 CGATACAATG
816986 TATCGATACATAAGTGTTA
1 TATCGATACATAAGTGTTA
817005 TATCGATAC--AA-TG---
1 TATCGATACATAAGTGTTA
*
817018 TATCGATACATAAGTTTTA
1 TATCGATACATAAGTGTTA
817037 TATCGATACA
1 TATCGATACA
817047 ATGTATCGCT
Statistics
Matches: 35, Mismatches: 1, Indels: 12
0.73 0.02 0.25
Matches are distributed among these distances:
13 9 0.26
15 2 0.06
16 3 0.09
17 2 0.06
19 19 0.54
ACGTcount: A:0.38, C:0.13, G:0.13, T:0.36
Consensus pattern (19 bp):
TATCGATACATAAGTGTTA
Found at i:817014 original size:32 final size:32
Alignment explanation
Indices: 816973--817054 Score: 155
Period size: 32 Copynumber: 2.6 Consensus size: 32
816963 CAACAATTTG
816973 TATCGATACAATGTATCGATACATAAGTGTTA
1 TATCGATACAATGTATCGATACATAAGTGTTA
*
817005 TATCGATACAATGTATCGATACATAAGTTTTA
1 TATCGATACAATGTATCGATACATAAGTGTTA
817037 TATCGATACAATGTATCG
1 TATCGATACAATGTATCG
817055 CTACGAAGCT
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
32 49 1.00
ACGTcount: A:0.37, C:0.13, G:0.15, T:0.35
Consensus pattern (32 bp):
TATCGATACAATGTATCGATACATAAGTGTTA
Found at i:817099 original size:20 final size:20
Alignment explanation
Indices: 817074--817111 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
817064 TACTGCCAAG
817074 GAAATGTATCGATACATTAC
1 GAAATGTATCGATACATTAC
817094 GAAATGTATCGATACATT
1 GAAATGTATCGATACATT
817112 GTATCGATAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.39, C:0.13, G:0.16, T:0.32
Consensus pattern (20 bp):
GAAATGTATCGATACATTAC
Found at i:817116 original size:13 final size:13
Alignment explanation
Indices: 817098--817123 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
817088 CATTACGAAA
817098 TGTATCGATACAT
1 TGTATCGATACAT
817111 TGTATCGATACAT
1 TGTATCGATACAT
817124 GGATCTTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:819344 original size:24 final size:26
Alignment explanation
Indices: 819317--819366 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
819307 TCAAAAAATT
819317 ATTCAT-C-GAGGACACTCCAACCCC
1 ATTCATCCGGAGGACACTCCAACCCC
* *
819341 ATTCCTCCGGGGGACACTCCAACCCC
1 ATTCATCCGGAGGACACTCCAACCCC
819367 GTTTTCAACC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
24 5 0.23
25 1 0.05
26 16 0.73
ACGTcount: A:0.24, C:0.44, G:0.16, T:0.16
Consensus pattern (26 bp):
ATTCATCCGGAGGACACTCCAACCCC
Found at i:832976 original size:3 final size:3
Alignment explanation
Indices: 832964--833011 Score: 62
Period size: 3 Copynumber: 16.0 Consensus size: 3
832954 CATATTTTTT
* *
832964 TTC TTT TTC TTC TTC TTC TTC CT- TTC TTC TTC TTC TTC TTCC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TT-C TTC
833009 TTC
1 TTC
833012 CCCACTCATA
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
2 1 0.03
3 35 0.90
4 3 0.08
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
TTC
Found at i:832995 original size:20 final size:20
Alignment explanation
Indices: 832966--833011 Score: 78
Period size: 20 Copynumber: 2.4 Consensus size: 20
832956 TATTTTTTTT
832966 CTTT-TTCTTCTTCTTCTTC
1 CTTTCTTCTTCTTCTTCTTC
832985 CTTTCTTCTTCTTCTTCTTC
1 CTTTCTTCTTCTTCTTCTTC
833005 C-TTCTTC
1 CTTTCTTC
833012 CCCACTCATA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
19 10 0.38
20 16 0.62
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (20 bp):
CTTTCTTCTTCTTCTTCTTC
Found at i:834317 original size:55 final size:55
Alignment explanation
Indices: 834252--834506 Score: 255
Period size: 61 Copynumber: 4.5 Consensus size: 55
834242 CTCCTTTCAC
*
834252 CCTTT-AGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCA
1 CCTTTCAGTCCTCAAAGAGCAGGACTCCTTTCAAAGCCCACACAAGTTGGTGGCA
* * * *
834306 CCTTTCAGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACATAAGCTGGTGGCA
1 CCTTTCAGTCCTCAAAGAGCAGGACTCCTTTCAAAGCCCACACAAGTTGGTGGCA
* * *
834361 CC-TTCAGTCCTCAAAGAGCAGGATGCCTTCTCCTTTTAAAGCCCATACAAATTGGTGGCA
1 CCTTTCAGTCCTCAAAGAGCAGGA------CTCCTTTCAAAGCCCACACAAGTTGGTGGCA
* * * *
834421 CTTTTCAATCCTCAAAGAGCAAGATGCTTTCTTTTTGCAAAGCCCACACAAGTTGGTGGCA
1 CCTTTCAGTCCTCAAAGAGCAGGA--C--TC-CTTT-CAAAGCCCACACAAGTTGGTGGCA
*
834482 -CTTCCTAGTCCTCAAAGAGCAGGAC
1 CCTTTC-AGTCCTCAAAGAGCAGGAC
834507 GCTCTCTCTT
Statistics
Matches: 167, Mismatches: 21, Indels: 21
0.80 0.10 0.10
Matches are distributed among these distances:
54 26 0.16
55 47 0.28
57 2 0.01
59 3 0.02
60 33 0.20
61 56 0.34
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (55 bp):
CCTTTCAGTCCTCAAAGAGCAGGACTCCTTTCAAAGCCCACACAAGTTGGTGGCA
Found at i:834463 original size:61 final size:59
Alignment explanation
Indices: 834279--834889 Score: 350
Period size: 61 Copynumber: 9.8 Consensus size: 59
834269 GCAGGACACC
* *
834279 TTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACGC---C-T
1 TTTCAAAGCCCACACAAGTTGGTGGCA-CTTTCAATCCTCAAAGAGCAGGATGCTTTCTT
* * * * *
834335 TTT-AAAGCCCACATAAGCTGGTGGCACCTTCAGTCCTCAAAGAGCAGGATGCCTTCTCCT
1 TTTCAAAGCCCACACAAGTTGGTGGCACTTTCAATCCTCAAAGAGCAGGATG-CTT-TCTT
* * *
834395 TTT-AAAGCCCATACAAATTGGTGGCACTTTTCAATCCTCAAAGAGCAAGATGCTTTCTT
1 TTTCAAAGCCCACACAAGTTGGTGGCAC-TTTCAATCCTCAAAGAGCAGGATGCTTTCTT
* * *
834454 TTTGCAAAGCCCACACAAGTTGGTGGCACTTCCTAGTCCTCAAAGAGCAGGACGCTCTCTCTTTT
1 TTT-CAAAGCCCACACAAGTTGGTGGCACTTTC-AATCCTCAAAGAGCAGGA-----T-GC-TTT
834519 CGCCTT
57 ---CTT
*
834525 TTTCTTTTAAAGCCCACATAAGTTGGTGGCACTTTTCAATCCTCAAAGAGCAGGATGCTTTCTT
1 TTTC----AAAGCCCACACAAGTTGGTGGCAC-TTTCAATCCTCAAAGAGCAGGATGCTTTCTT
*
834589 TTTGCAAAGCCCACA-AAGTTGGTGGCAC-TTCATAGTCCTCAAAGAGCAGGACGCTCTCTTCTT
1 TTT-CAAAGCCCACACAAGTTGGTGGCACTTTCA-A-TCCTCAAAGAGCAGGA-------TGCTT
834652 TCGCCTT
56 T---CTT
* ** * ** * * * * *
834659 TTTCTTTTAAAGCC-CACATAAGCTGACGGCGCCTTT-AGTCCTCAAAAAGTAGGACGCCTTCTC
1 TTTC---AAAGCCCACAC--AAGTTGGTGGC-ACTTTCAATCCTCAAAGAGCAGGATG-CTT-TC
*
834722 CT
58 TT
* * *
834724 TTT-AAAGCCCATACAAGTAGGTGGCACTTTTCAGTCCTCAAAGAGCAGGATGCTTTCTT
1 TTTCAAAGCCCACACAAGTTGGTGGCAC-TTTCAATCCTCAAAGAGCAGGATGCTTTCTT
* * * * * *
834783 TTTGTAAAG-CC-CACAAGTTGGTTGCA-TCTTCTAGTCCTCAAAGGGCAGGACGCTTTTTCT
1 TTT-CAAAGCCCACACAAGTTGGTGGCACT-TTC-AATCCTCAAAGAGCAGGATGCTTTCT-T
* *
834843 TTTCAAAACCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGC
1 TTTCAAAGCCCACACAAGTTGGTGGCAC-TTTCAATCCTCAAAGAGC
834890 GAGACACACT
Statistics
Matches: 436, Mismatches: 59, Indels: 115
0.71 0.10 0.19
Matches are distributed among these distances:
54 23 0.05
55 22 0.05
56 3 0.01
57 1 0.00
58 7 0.02
59 53 0.12
60 80 0.18
61 121 0.28
62 5 0.01
63 1 0.00
64 6 0.01
65 6 0.01
66 1 0.00
67 12 0.03
68 5 0.01
69 2 0.00
70 7 0.02
71 8 0.02
72 4 0.01
73 14 0.03
74 48 0.11
75 5 0.01
76 2 0.00
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.29
Consensus pattern (59 bp):
TTTCAAAGCCCACACAAGTTGGTGGCACTTTCAATCCTCAAAGAGCAGGATGCTTTCTT
Found at i:834616 original size:60 final size:61
Alignment explanation
Indices: 834533--834648 Score: 175
Period size: 60 Copynumber: 1.9 Consensus size: 61
834523 TTTTTCTTTT
* *
834533 AAAGCCCACATAAGTTGGTGGCACTTTTCA-A-TCCTCAAAGAGCAGGATGCTTTCTTTTTGC
1 AAAGCCCACATAAGTTGGTGGCAC--TTCATAGTCCTCAAAGAGCAGGACGCTCTCTTTTTGC
834594 AAAGCCCACA-AAGTTGGTGGCACTTCATAGTCCTCAAAGAGCAGGACGCTCTCTT
1 AAAGCCCACATAAGTTGGTGGCACTTCATAGTCCTCAAAGAGCAGGACGCTCTCTT
834649 CTTTCGCCTT
Statistics
Matches: 51, Mismatches: 2, Indels: 5
0.88 0.03 0.09
Matches are distributed among these distances:
58 4 0.08
59 1 0.02
60 36 0.71
61 10 0.20
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.27
Consensus pattern (61 bp):
AAAGCCCACATAAGTTGGTGGCACTTCATAGTCCTCAAAGAGCAGGACGCTCTCTTTTTGC
Found at i:834675 original size:134 final size:136
Alignment explanation
Indices: 834393--834782 Score: 524
Period size: 134 Copynumber: 2.9 Consensus size: 136
834383 ATGCCTTCTC
* * * *
834393 CTTTTAAAGCCCATACAAATTGGTGGCACTTTTCAATCCTCAAAGAGCAAGATGCTTTCTTTTTG
1 CTTTTAAAGCCCACATAAGTTGGTGGCACTTTTCAATCCTCAAAGAGCAGGATGCTTTCTTTTTG
*
834458 CAAAGCCCACACAAGTTGGTGGCACTTCCTAGTCCTCAAAGAGCAGGACGCTCTC-TCTTTTCGC
66 CAAAGCCCACACAAGTTGGTGGCACTTCATAGTCCTCAAAGAGCAGGACGCTCTCTTCTTTTCGC
834522 CTTTTT
131 CTTTTT
834528 CTTTTAAAGCCCACATAAGTTGGTGGCACTTTTCAATCCTCAAAGAGCAGGATGCTTTCTTTTTG
1 CTTTTAAAGCCCACATAAGTTGGTGGCACTTTTCAATCCTCAAAGAGCAGGATGCTTTCTTTTTG
834593 CAAAGCCCACA-AAGTTGGTGGCACTTCATAGTCCTCAAAGAGCAGGACGCTCTCTTC-TTTCGC
66 CAAAGCCCACACAAGTTGGTGGCACTTCATAGTCCTCAAAGAGCAGGACGCTCTCTTCTTTTCGC
834656 CTTTTT
131 CTTTTT
* ** * * * * * * *
834662 CTTTTAAAGCCCACATAAGCTGACGGCGCCTTT-AGTCCTCAAAAAGTAGGACGCCTTCTCCTTT
1 CTTTTAAAGCCCACATAAGTTGGTGGCACTTTTCAATCCTCAAAGAGCAGGATG-CTT-TCTTTT
* * * * *
834726 T--AAAGCCCATACAAGTAGGTGGCACTT-TTCAGTCCTCAAAGAGCAGGATGCTTTCTT
64 TGCAAAGCCCACACAAGTTGGTGGCACTTCAT-AGTCCTCAAAGAGCAGGACGCTCTCTT
834783 TTTGTAAAGC
Statistics
Matches: 230, Mismatches: 20, Indels: 11
0.88 0.08 0.04
Matches are distributed among these distances:
133 26 0.11
134 124 0.54
135 80 0.35
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.31
Consensus pattern (136 bp):
CTTTTAAAGCCCACATAAGTTGGTGGCACTTTTCAATCCTCAAAGAGCAGGATGCTTTCTTTTTG
CAAAGCCCACACAAGTTGGTGGCACTTCATAGTCCTCAAAGAGCAGGACGCTCTCTTCTTTTCGC
CTTTTT
Found at i:834976 original size:42 final size:42
Alignment explanation
Indices: 834910--835014 Score: 122
Period size: 42 Copynumber: 2.5 Consensus size: 42
834900 TCCTTCCCTT
* * *
834910 CTTTTCTCTTTTGTCCTCAAAGAGCAGGATGCACTTT-ATTTTC
1 CTTTT-TCTTTTATCCTCAAAGAGCAGGACGCA-TTTCATTTCC
* * *
834953 CTTTTTCTTTTATCCTCAGAGAGCAGGACGTATTTCGTTTCC
1 CTTTTTCTTTTATCCTCAAAGAGCAGGACGCATTTCATTTCC
*
834995 CTTTTTCCTTTATCCTCAAA
1 CTTTTTCTTTTATCCTCAAA
835015 AAATGAGATG
Statistics
Matches: 53, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
41 3 0.06
42 45 0.85
43 5 0.09
ACGTcount: A:0.18, C:0.25, G:0.12, T:0.45
Consensus pattern (42 bp):
CTTTTTCTTTTATCCTCAAAGAGCAGGACGCATTTCATTTCC
Found at i:835820 original size:19 final size:21
Alignment explanation
Indices: 835777--835826 Score: 77
Period size: 21 Copynumber: 2.5 Consensus size: 21
835767 TTCAATAATT
835777 TGTATCGATACAAACAGTAAA
1 TGTATCGATACAAACAGTAAA
*
835798 TGTATCGATACATA-AGT-AA
1 TGTATCGATACAAACAGTAAA
835817 TGTATCGATA
1 TGTATCGATA
835827 TAGTGTATCG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
19 12 0.43
20 3 0.11
21 13 0.46
ACGTcount: A:0.42, C:0.12, G:0.16, T:0.30
Consensus pattern (21 bp):
TGTATCGATACAAACAGTAAA
Found at i:839536 original size:18 final size:18
Alignment explanation
Indices: 839513--839548 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
839503 TGTGACAATT
839513 ATTTGTGACACAATTTCA
1 ATTTGTGACACAATTTCA
* *
839531 ATTTGTGATAGAATTTCA
1 ATTTGTGACACAATTTCA
839549 TAACAAAATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.33, C:0.11, G:0.14, T:0.42
Consensus pattern (18 bp):
ATTTGTGACACAATTTCA
Found at i:842665 original size:72 final size:72
Alignment explanation
Indices: 842358--842913 Score: 302
Period size: 72 Copynumber: 7.7 Consensus size: 72
842348 CCTCTAGTAT
* * * * * * * * *
842358 TCAAAGAGCAAGATGCTTTTTCTTACCTACCTCAAAACCTACATAAACTGGTGACACCTATTTAC
1 TCAAAAAGCAAGATG-TTTTTCTTACCTACCACAAAGCCCACACAAGCTAGTGGCACCTATCTAC
* *
842423 CTCAAT-C
65 CTTAGTCC
* * * * ** ** *
842430 TATAAAAGAGCTACATGCCTTTTCTTATGTACCACAAAGCCCATGCAAG-TAGTGGCATCTATCT
1 T-CAAAA-AGCAAGATG-TTTTTCTTACCTACCACAAAGCCCACACAAGCTAGTGGCACCTATCT
*
842494 ACCTTAATCC
63 ACCTTAGTCC
* *** * *** * **
842504 TAAAAAAGTTGGATGCTTTTTTTTACC-ACCACAAAGATTACGCAAGCTAGTGGCATATATCTAC
1 TCAAAAAGCAAGATG-TTTTTCTTACCTACCACAAAGCCCACACAAGCTAGTGGCACCTATCTAC
*
842568 CTCAGTCC
65 CTTAGTCC
* ** * * *
842576 -CTAAAAAACCTGAATGTTTTT-TTACTTACCACAAAGCCCACGCAAGCTAGTGGCACTTATCTA
1 TC-AAAAAGCAAG-ATGTTTTTCTTACCTACCACAAAGCCCACACAAGCTAGTGGCACCTATCTA
842639 CCTTTAGTCC
64 CC-TTAGTCC
* * * * * * *
842649 TCAAAGAGCAAGATGTTTTTCTTACCTATCATAAAGCTCACACAAGTTGGTGGCACCTATTTACC
1 TCAAAAAGCAAGATGTTTTTCTTACCTACCACAAAGCCCACACAAGCTAGTGGCACCTATCTACC
842714 TCTAGTCC
66 T-TAGTCC
** ** ** * *
842722 TC-AAAATTAAGACATTTTTCTTACCTACTGCAAAGCCCATACAAG-TGGTGGCACCTATCTA-C
1 TCAAAAAGCAAGATGTTTTTCTTACCTACCACAAAGCCCACACAAGCTAGTGGCACCTATCTACC
842784 TTCCAGTCC
66 TT--AGTCC
* * ** ** * * *
842793 TCAAAGAGCAGGACATTTTTCTTACCTATTACAAAACCCATACAAGCTAGTGGAACCTATCTACC
1 TCAAAAAGCAAGATGTTTTTCTTACCTACCACAAAGCCCACACAAGCTAGTGGCACCTATCTACC
842858 TTAGT-C
66 TTAGTCC
* ** ** * *
842864 TATAAAAAGCTGGACTCCTTTTCTTACCTACCTCAAAGCCCACTCAAGCT
1 T-CAAAAAGCAAGA-TGTTTTTCTTACCTACCACAAAGCCCACACAAGCT
842914 TGTGATACCA
Statistics
Matches: 374, Mismatches: 92, Indels: 35
0.75 0.18 0.07
Matches are distributed among these distances:
69 1 0.00
70 2 0.01
71 43 0.11
72 170 0.45
73 123 0.33
74 35 0.09
ACGTcount: A:0.31, C:0.26, G:0.13, T:0.30
Consensus pattern (72 bp):
TCAAAAAGCAAGATGTTTTTCTTACCTACCACAAAGCCCACACAAGCTAGTGGCACCTATCTACC
TTAGTCC
Found at i:843811 original size:114 final size:114
Alignment explanation
Indices: 843601--843829 Score: 253
Period size: 114 Copynumber: 2.0 Consensus size: 114
843591 ATTCAAATTG
* * * *
843601 TTATAAGATGTATTGATACCCATCATGATTGTATCGATATAGACCCTGACAGTAGCTATAGTTGT
1 TTATAAGATGTATCGATACCCATCATGATTGTATCGATATAGACCATGACAATAGCTATAGTTGG
* ** * *
843666 GACTTTCAGCAGAACATATTGATACATAAGCTTGTGTATCGATACAAGT
66 GACTTTCAGCAAAACATATCAATACACAAGCTTCTGTATCGATACAAGT
* * * * *
843715 TTATGAGATGTATCGATACCCATTATGATTGTATTGATATAGGCCATTAGCAATAGCTATAGTTG
1 TTATAAGATGTATCGATACCCATCATGATTGTATCGATATAGACCATGA-CAATAGCTATAGTTG
** * ** * *
843780 GGA-TTTTGGTAAAATGTATCAATACACAAGCTTCTGTGTTGATACAAGT
65 GGACTTTCAGCAAAACATATCAATACACAAGCTTCTGTATCGATACAAGT
843829 T
1 T
843830 CAAGGAGTAT
Statistics
Matches: 93, Mismatches: 21, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
114 77 0.83
115 16 0.17
ACGTcount: A:0.32, C:0.14, G:0.19, T:0.35
Consensus pattern (114 bp):
TTATAAGATGTATCGATACCCATCATGATTGTATCGATATAGACCATGACAATAGCTATAGTTGG
GACTTTCAGCAAAACATATCAATACACAAGCTTCTGTATCGATACAAGT
Found at i:844335 original size:14 final size:13
Alignment explanation
Indices: 844288--844335 Score: 53
Period size: 13 Copynumber: 3.7 Consensus size: 13
844278 TGGTTCAGCT
*
844288 AAAAAGAGACAAA
1 AAAAAGAGAAAAA
844301 AAAAAGA-AAAAA
1 AAAAAGAGAAAAA
**
844313 AAAGGGAGAAAAA
1 AAAAAGAGAAAAA
844326 AAACAAGAGA
1 AAA-AAGAGA
844336 GAAGAAGAAA
Statistics
Matches: 28, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
12 9 0.32
13 15 0.54
14 4 0.14
ACGTcount: A:0.77, C:0.04, G:0.19, T:0.00
Consensus pattern (13 bp):
AAAAAGAGAAAAA
Found at i:845088 original size:17 final size:18
Alignment explanation
Indices: 845053--845088 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
845043 TCAAAATGAT
*
845053 TCTTATTTGTCATAAAAA
1 TCTTATTTGTCAAAAAAA
845071 TCTTATTT-TCAAAAAAA
1 TCTTATTTGTCAAAAAAA
845088 T
1 T
845089 AGATCTCTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 9 0.53
18 8 0.47
ACGTcount: A:0.42, C:0.11, G:0.03, T:0.44
Consensus pattern (18 bp):
TCTTATTTGTCAAAAAAA
Found at i:847365 original size:13 final size:13
Alignment explanation
Indices: 847347--847376 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
847337 ACTATCCTTC
847347 ATGTATCAATACA
1 ATGTATCAATACA
*
847360 ATGTATCGATACA
1 ATGTATCAATACA
847373 ATGT
1 ATGT
847377 GAGTTTTAGC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.40, C:0.13, G:0.13, T:0.33
Consensus pattern (13 bp):
ATGTATCAATACA
Found at i:847445 original size:19 final size:20
Alignment explanation
Indices: 847421--847471 Score: 68
Period size: 20 Copynumber: 2.6 Consensus size: 20
847411 TATTTTAGTC
* *
847421 TGTATCGATAGAATG-AACA
1 TGTATCGATACAAAGCAACA
*
847440 TGTATCGATACAAAGCAATA
1 TGTATCGATACAAAGCAACA
847460 TGTATCGATACA
1 TGTATCGATACA
847472 TCTGGATGTC
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
19 13 0.46
20 15 0.54
ACGTcount: A:0.41, C:0.14, G:0.18, T:0.27
Consensus pattern (20 bp):
TGTATCGATACAAAGCAACA
Found at i:850557 original size:13 final size:13
Alignment explanation
Indices: 850539--850595 Score: 60
Period size: 13 Copynumber: 3.9 Consensus size: 13
850529 CAGTTTATGG
850539 TGTATCGATACAA
1 TGTATCGATACAA
850552 TGTATCGATACATA
1 TGTATCGATACA-A
850566 CTGTGTGTATCGATACAA
1 -----TGTATCGATACAA
850584 TGTATCGATACA
1 TGTATCGATACA
850596 TACTGTGTGT
Statistics
Matches: 38, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
13 24 0.63
14 1 0.03
18 1 0.03
19 12 0.32
ACGTcount: A:0.33, C:0.16, G:0.18, T:0.33
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:850576 original size:19 final size:19
Alignment explanation
Indices: 850552--850614 Score: 84
Period size: 19 Copynumber: 3.6 Consensus size: 19
850542 ATCGATACAA
850552 TGTATCGATACATACTGTG
1 TGTATCGATACATACTGTG
850571 TGTATCGATACA-A-----
1 TGTATCGATACATACTGTG
850584 TGTATCGATACATACTGTG
1 TGTATCGATACATACTGTG
850603 TGTATCGATACA
1 TGTATCGATACA
850615 AGTTTGGCTA
Statistics
Matches: 38, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
13 12 0.32
14 1 0.03
18 1 0.03
19 24 0.63
ACGTcount: A:0.30, C:0.16, G:0.19, T:0.35
Consensus pattern (19 bp):
TGTATCGATACATACTGTG
Found at i:850579 original size:32 final size:32
Alignment explanation
Indices: 850516--850615 Score: 159
Period size: 32 Copynumber: 3.1 Consensus size: 32
850506 CGTTACAAGC
850516 CAATGTATCGATACAGTTTA-TG-GTGTATCGATA
1 CAATGTATCGATACA---TACTGTGTGTATCGATA
850549 CAATGTATCGATACATACTGTGTGTATCGATA
1 CAATGTATCGATACATACTGTGTGTATCGATA
850581 CAATGTATCGATACATACTGTGTGTATCGATA
1 CAATGTATCGATACATACTGTGTGTATCGATA
850613 CAA
1 CAA
850616 GTTTGGCTAC
Statistics
Matches: 65, Mismatches: 0, Indels: 5
0.93 0.00 0.07
Matches are distributed among these distances:
30 2 0.03
31 2 0.03
32 46 0.71
33 15 0.23
ACGTcount: A:0.32, C:0.15, G:0.19, T:0.34
Consensus pattern (32 bp):
CAATGTATCGATACATACTGTGTGTATCGATA
Found at i:853140 original size:13 final size:13
Alignment explanation
Indices: 853122--853159 Score: 67
Period size: 13 Copynumber: 2.9 Consensus size: 13
853112 ATAATCCCTC
853122 TGTATCGATACAG
1 TGTATCGATACAG
*
853135 TGTATCGATACAT
1 TGTATCGATACAG
853148 TGTATCGATACA
1 TGTATCGATACA
853160 AAGAATTCTG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.34
Consensus pattern (13 bp):
TGTATCGATACAG
Found at i:856993 original size:9 final size:9
Alignment explanation
Indices: 856979--857009 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
856969 TTTGAGTCAC
*
856979 CATCATCAT
1 CATCATCTT
856988 CATCATCTT
1 CATCATCTT
856997 CATCATCTT
1 CATCATCTT
857006 CATC
1 CATC
857010 GTCCTCGATG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.26, C:0.35, G:0.00, T:0.39
Consensus pattern (9 bp):
CATCATCTT
Found at i:858608 original size:13 final size:13
Alignment explanation
Indices: 858590--858614 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
858580 CAGTTTATGG
858590 TGTATCGATACAA
1 TGTATCGATACAA
858603 TGTATCGATACA
1 TGTATCGATACA
858615 TACTGTGTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:858609 original size:33 final size:32
Alignment explanation
Indices: 858567--858634 Score: 95
Period size: 33 Copynumber: 2.1 Consensus size: 32
858557 CGTTACAAGC
858567 CAATGTATCGATACAGTTTA-TG-GTGTATCGATA
1 CAATGTATCGATACA---TACTGTGTGTATCGATA
858600 CAATGTATCGATACATACTGTGTGTATCGATA
1 CAATGTATCGATACATACTGTGTGTATCGATA
858632 CAA
1 CAA
858635 GTTTGGCTAC
Statistics
Matches: 33, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
30 2 0.06
31 2 0.06
32 14 0.42
33 15 0.45
ACGTcount: A:0.32, C:0.15, G:0.19, T:0.34
Consensus pattern (32 bp):
CAATGTATCGATACATACTGTGTGTATCGATA
Found at i:859337 original size:13 final size:13
Alignment explanation
Indices: 859319--859352 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
859309 GTGCCCTTGC
859319 ATCGATACAATGT
1 ATCGATACAATGT
859332 ATCGATACAATGT
1 ATCGATACAATGT
*
859345 ATCAATAC
1 ATCGATAC
859353 TAAGAATGCA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.41, C:0.18, G:0.12, T:0.29
Consensus pattern (13 bp):
ATCGATACAATGT
Found at i:860665 original size:4 final size:4
Alignment explanation
Indices: 860656--860690 Score: 70
Period size: 4 Copynumber: 8.8 Consensus size: 4
860646 TTTTGAGGTG
860656 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTT
860691 TGTTTTGTTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 31 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (4 bp):
TTTA
Found at i:866120 original size:20 final size:19
Alignment explanation
Indices: 866095--866186 Score: 96
Period size: 20 Copynumber: 4.7 Consensus size: 19
866085 GTTTGAAGCA
866095 ATGTATCGATACAATTCATC
1 ATGTATCGATACAATT-ATC
*
866115 ATGTATCGATAC-ATTGTGCC
1 ATGTATCGATACAATTAT--C
* *
866135 ATGTATCGATACAATGAAC
1 ATGTATCGATACAATTATC
*
866154 ATGTATCGATACAAATTATA
1 ATGTATCGATAC-AATTATC
*
866174 ATGTATCAATACA
1 ATGTATCGATACA
866187 TCTAGGTGTG
Statistics
Matches: 60, Mismatches: 8, Indels: 9
0.78 0.10 0.12
Matches are distributed among these distances:
18 1 0.02
19 17 0.28
20 40 0.67
21 2 0.03
ACGTcount: A:0.38, C:0.16, G:0.13, T:0.33
Consensus pattern (19 bp):
ATGTATCGATACAATTATC
Found at i:866178 original size:39 final size:39
Alignment explanation
Indices: 866093--866186 Score: 102
Period size: 39 Copynumber: 2.4 Consensus size: 39
866083 CCGTTTGAAG
* *
866093 CAATGTATCGATACAATTCATCATGTATCGATACATTGT
1 CAATGTATCGATACAATTCAACATGTATCGATACATTAT
* *
866132 GCCATGTATCGATACAA-TGAACATGTATCGATACAAATTAT
1 -CAATGTATCGATACAATTCAACATGTATCGATAC--ATTAT
*
866173 -AATGTATCAATACA
1 CAATGTATCGATACA
866187 TCTAGGTGTG
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
39 27 0.59
40 15 0.33
41 4 0.09
ACGTcount: A:0.38, C:0.17, G:0.13, T:0.32
Consensus pattern (39 bp):
CAATGTATCGATACAATTCAACATGTATCGATACATTAT
Found at i:866199 original size:59 final size:57
Alignment explanation
Indices: 866095--866206 Score: 138
Period size: 59 Copynumber: 1.9 Consensus size: 57
866085 GTTTGAAGCA
* *
866095 ATGTATCGATACAATTCATCATGTATCGATACATTGTGCCATGTATCGATACAATGAAC
1 ATGTATCGATACAATTCATAATGTATCAATACATTGTG-C-TGTATCGATACAATGAAC
866154 ATGTATCGATACAAATT-ATAATGTATCAATACATCTAGGTG-TGTATCGATACA
1 ATGTATCGATAC-AATTCATAATGTATCAATACAT-T--GTGCTGTATCGATACA
866207 TTCAAGGGTT
Statistics
Matches: 47, Mismatches: 2, Indels: 8
0.82 0.04 0.14
Matches are distributed among these distances:
59 39 0.83
60 5 0.11
62 3 0.06
ACGTcount: A:0.36, C:0.16, G:0.15, T:0.33
Consensus pattern (57 bp):
ATGTATCGATACAATTCATAATGTATCAATACATTGTGCTGTATCGATACAATGAAC
Found at i:866942 original size:21 final size:21
Alignment explanation
Indices: 866916--866955 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
866906 AATAGAAATC
866916 CAATGT-ACTAGTTTGAACAAG
1 CAATGTCACTAGTTT-AACAAG
*
866937 CAATGTCACTTGTTTAACA
1 CAATGTCACTAGTTTAACA
866956 CCTTTGTGTG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 10 0.59
22 7 0.41
ACGTcount: A:0.35, C:0.17, G:0.15, T:0.33
Consensus pattern (21 bp):
CAATGTCACTAGTTTAACAAG
Found at i:867635 original size:20 final size:20
Alignment explanation
Indices: 867610--867826 Score: 110
Period size: 20 Copynumber: 9.8 Consensus size: 20
867600 AAAAAGATAG
*
867610 AATGTATCGATACATTGGAA
1 AATGTATCGATACATTGAAA
* * * *
867630 AATGTATTGATATATTCATA
1 AATGTATCGATACATTGAAA
*
867650 CATGTATCGATACATTGAAA
1 AATGTATCGATACATTGAAA
867670 AATGTATCGATACATTCGGGTAAAAAGATA
1 AATGTATCGATACATT---G-----A-A-A
* * *
867700 GAATGTATCAATACATTCATA
1 -AATGTATCGATACATTGAAA
*
867721 CATGTATCGATACATTGAAA
1 AATGTATCGATACATTGAAA
867741 AATGTATCGATACATTCGGGTAAAAAGATA
1 AATGTATCGATACATT---G-----A-A-A
* * *
867771 GAATGTATCAATACATTCATA
1 -AATGTATCGATACATTGAAA
*
867792 CATGTATCGATACATTGAAA
1 AATGTATCGATACATTGAAA
867812 AATGTATCGATACAT
1 AATGTATCGATACAT
867827 ATGGATAAAA
Statistics
Matches: 148, Mismatches: 27, Indels: 44
0.68 0.12 0.20
Matches are distributed among these distances:
20 106 0.72
21 2 0.01
23 4 0.03
28 2 0.01
29 2 0.01
30 2 0.01
31 30 0.20
ACGTcount: A:0.41, C:0.12, G:0.15, T:0.31
Consensus pattern (20 bp):
AATGTATCGATACATTGAAA
Found at i:867666 original size:40 final size:40
Alignment explanation
Indices: 867611--867826 Score: 126
Period size: 40 Copynumber: 4.8 Consensus size: 40
867601 AAAAGATAGA
* * *
867611 ATGTATCGATACATTGGAAAATGTATTGATATATTCATAC
1 ATGTATCGATACATTGAAAAATGTATCGATACATTCATAC
*
867651 ATGTATCGATACATTGAAAAATGTATCGATACATTCGGGTAAAAAGATAGA
1 ATGTATCGATACATTGAAAAATGTATCGATACATTC----------ATA-C
* * * * * * *
867702 ATGTATCAATACATTCATACATGTATCGATACATTGAAAA
1 ATGTATCGATACATTGAAAAATGTATCGATACATTCATAC
*
867742 ATGTATCGATACATTCGGGTAAAAAGATAGAATGTATCAATACATTCATAC
1 ATGTATCGATACATT---G-----A-A-A-AATGTATCGATACATTCATAC
867793 ATGTATCGATACATTGAAAAATGTATCGATACAT
1 ATGTATCGATACATTGAAAAATGTATCGATACAT
867827 ATGGATAAAA
Statistics
Matches: 135, Mismatches: 19, Indels: 44
0.68 0.10 0.22
Matches are distributed among these distances:
40 62 0.46
41 3 0.02
42 1 0.01
43 1 0.01
48 2 0.01
50 4 0.03
51 62 0.46
ACGTcount: A:0.41, C:0.12, G:0.15, T:0.31
Consensus pattern (40 bp):
ATGTATCGATACATTGAAAAATGTATCGATACATTCATAC
Found at i:867705 original size:71 final size:71
Alignment explanation
Indices: 867643--867858 Score: 380
Period size: 71 Copynumber: 3.0 Consensus size: 71
867633 GTATTGATAT
867643 ATTCATACATGTATCGATACATTGAAAAATGTATCGATACATTCGGGTAAAAAGATAGAATGTAT
1 ATTCATACATGTATCGATACATTGAAAAATGTATCGATACATTCGGGTAAAAAGATAGAATGTAT
867708 CAATAC
66 CAATAC
867714 ATTCATACATGTATCGATACATTGAAAAATGTATCGATACATTCGGGTAAAAAGATAGAATGTAT
1 ATTCATACATGTATCGATACATTGAAAAATGTATCGATACATTCGGGTAAAAAGATAGAATGTAT
867779 CAATAC
66 CAATAC
* *
867785 ATTCATACATGTATCGATACATTGAAAAATGTATCGATACATAT-GGATAAAAAAGCTAGAATGT
1 ATTCATACATGTATCGATACATTGAAAAATGTATCGATACAT-TCGGGT-AAAAAGATAGAATGT
*
867849 ATCGATAC
64 ATCAATAC
867857 AT
1 AT
867859 CTGGGTAAAA
Statistics
Matches: 140, Mismatches: 3, Indels: 3
0.96 0.02 0.02
Matches are distributed among these distances:
71 116 0.83
72 24 0.17
ACGTcount: A:0.43, C:0.12, G:0.15, T:0.30
Consensus pattern (71 bp):
ATTCATACATGTATCGATACATTGAAAAATGTATCGATACATTCGGGTAAAAAGATAGAATGTAT
CAATAC
Found at i:867715 original size:91 final size:91
Alignment explanation
Indices: 867560--867756 Score: 238
Period size: 91 Copynumber: 2.2 Consensus size: 91
867550 TTTTAACTAG
** * *
867560 ATGTATCGATACATTATTCAATGTATCGTTACATCTAGGTAAAAAGATAGAATGTATCGATACAT
1 ATGTATCGATACATTATAAAATGTATCGATACATCTAGGTAAAAAGATAGAATGTATCAATACAT
* * * * *
867625 TGGA-AAATGTATTGATATATTCATAC
66 T-CATAAATGTATCGATACATTCAAAA
*
867651 ATGTATCGATACATTGA-AAAATGTATCGATACAT-TCGGGTAAAAAGATAGAATGTATCAATAC
1 ATGTATCGATACATT-ATAAAATGTATCGATACATCT-AGGTAAAAAGATAGAATGTATCAATAC
* *
867714 ATTCATACATGTATCGATACATTGAAAA
64 ATTCATAAATGTATCGATACATTCAAAA
867742 ATGTATCGATACATT
1 ATGTATCGATACATT
867757 CGGGTAAAAA
Statistics
Matches: 91, Mismatches: 12, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
90 2 0.02
91 88 0.97
92 1 0.01
ACGTcount: A:0.40, C:0.12, G:0.15, T:0.33
Consensus pattern (91 bp):
ATGTATCGATACATTATAAAATGTATCGATACATCTAGGTAAAAAGATAGAATGTATCAATACAT
TCATAAATGTATCGATACATTCAAAA
Found at i:878738 original size:49 final size:49
Alignment explanation
Indices: 878680--878802 Score: 221
Period size: 49 Copynumber: 2.5 Consensus size: 49
878670 CAATATGTCA
878680 ATTCAAGGCCAGCGACATTGGGCTAAGAGAAAAGTGGACCAATGTGCTG
1 ATTCAAGGCCAGCGACATTGGGCTAAGAGAAAAGTGGACCAATGTGCTG
* *
878729 ATTCAAGGCCAACGACATTGGGCTAAGGGAAAAGTGGACCAATGTGCTG
1 ATTCAAGGCCAGCGACATTGGGCTAAGAGAAAAGTGGACCAATGTGCTG
878778 ATTCAAGGCC-GCGACATTGGGCTAA
1 ATTCAAGGCCAGCGACATTGGGCTAA
878803 TAAAGGTGCT
Statistics
Matches: 71, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
48 14 0.20
49 57 0.80
ACGTcount: A:0.32, C:0.20, G:0.30, T:0.19
Consensus pattern (49 bp):
ATTCAAGGCCAGCGACATTGGGCTAAGAGAAAAGTGGACCAATGTGCTG
Found at i:878920 original size:28 final size:28
Alignment explanation
Indices: 878879--879289 Score: 511
Period size: 28 Copynumber: 14.4 Consensus size: 28
878869 ACCAACTTGC
*
878879 GTGGGCTTTTAAAGGATGCCACTGACTT
1 GTGGGCTTTGAAAGGATGCCACTGACTT
* *
878907 GTGGGTTTTGAAAGGATGCCACTAACTT
1 GTGGGCTTTGAAAGGATGCCACTGACTT
* * **
878935 GTAGGCTTTAATAAAAATGCCACTGACTT
1 GTGGGCTTTGA-AAGGATGCCACTGACTT
* *
878964 ATGGGCTTTGAAAGGGTGCCACTGACTT
1 GTGGGCTTTGAAAGGATGCCACTGACTT
*
878992 GT-GGCTTTGAAAAGATGCCACTGACTT
1 GTGGGCTTTGAAAGGATGCCACTGACTT
* * *
879019 GTGGGCTTTGAAAAGAGTTGCCACCGACTC
1 GTGGGCTTTG-AAAG-GATGCCACTGACTT
879049 GTGGGCTTTGAAAGGATGCCACTGACTT
1 GTGGGCTTTGAAAGGATGCCACTGACTT
* *
879077 GTGGGCTTTAAAAGGATGCCACTAACTT
1 GTGGGCTTTGAAAGGATGCCACTGACTT
*
879105 GTGGGCTTTGAAAAGAGTTGCCACT-AGCTCGT
1 GTGGGCTTTG-AAAG-GATGCCACTGA-CT--T
* *
879137 GTGGGCTTTGAAAAGAGTGCGACTGACTT
1 GTGGGCTTTGAAAGGA-TGCCACTGACTT
879166 GTGGGCTTTGAAAGGATGCCACTGACTT
1 GTGGGCTTTGAAAGGATGCCACTGACTT
879194 GTGGGCTTTGAAAGGATGCCACTGACTT
1 GTGGGCTTTGAAAGGATGCCACTGACTT
* * *
879222 GTGGGCTTTAAAAGGGTGCCATTGACTT
1 GTGGGCTTTGAAAGGATGCCACTGACTT
* *
879250 GTGGACTTTGAAAGGGTGCCACTGACTT
1 GTGGGCTTTGAAAGGATGCCACTGACTT
*
879278 GTGGGATTTGAA
1 GTGGGCTTTGAA
879290 GAGATGAACG
Statistics
Matches: 330, Mismatches: 42, Indels: 22
0.84 0.11 0.06
Matches are distributed among these distances:
27 25 0.08
28 200 0.61
29 50 0.15
30 32 0.10
31 11 0.03
32 12 0.04
ACGTcount: A:0.24, C:0.17, G:0.30, T:0.29
Consensus pattern (28 bp):
GTGGGCTTTGAAAGGATGCCACTGACTT
Found at i:880534 original size:10 final size:9
Alignment explanation
Indices: 880521--880564 Score: 52
Period size: 9 Copynumber: 4.7 Consensus size: 9
880511 TTTTGCTATT
880521 TTTTTCTTGG
1 TTTTT-TTGG
*
880531 TTTTTTTGT
1 TTTTTTTGG
*
880540 TTTTTTTTG
1 TTTTTTTGG
880549 TTTTTGTTGG
1 TTTTT-TTGG
880559 TTTTTT
1 TTTTTT
880565 CCTTTTTTTT
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
9 16 0.55
10 13 0.45
ACGTcount: A:0.00, C:0.02, G:0.16, T:0.82
Consensus pattern (9 bp):
TTTTTTTGG
Found at i:880541 original size:8 final size:8
Alignment explanation
Indices: 880506--880609 Score: 54
Period size: 8 Copynumber: 13.1 Consensus size: 8
880496 GACCCCTTTC
880506 TGTTTTTT
1 TGTTTTTT
* *
880514 TGCTATTT
1 TGTTTTTT
*
880522 T-TTTCTT
1 TGTTTTTT
*
880529 GGTTTTTT
1 TGTTTTTT
880537 TGTTTTTT
1 TGTTTTTT
880545 T-TTGTTTT
1 TGTT-TTTT
*
880553 TGTTGGTTT
1 TGTT-TTTT
**
880562 T-TTCCTT
1 TGTTTTTT
880569 T-TTTTTT
1 TGTTTTTT
880576 TGTTTTTT
1 TGTTTTTT
*
880584 CTATTTTTT
1 -TGTTTTTT
* *
880593 TATTTATT
1 TGTTTTTT
*
880601 TATTTTTT
1 TGTTTTTT
880609 T
1 T
880610 CGCTATGAAG
Statistics
Matches: 75, Mismatches: 16, Indels: 10
0.74 0.16 0.10
Matches are distributed among these distances:
7 13 0.17
8 48 0.64
9 14 0.19
ACGTcount: A:0.05, C:0.05, G:0.10, T:0.81
Consensus pattern (8 bp):
TGTTTTTT
Found at i:880553 original size:28 final size:28
Alignment explanation
Indices: 880521--880582 Score: 90
Period size: 28 Copynumber: 2.2 Consensus size: 28
880511 TTTTGCTATT
880521 TTTTTCTTGGTTTTTT-TGTTTTTTTTTG
1 TTTTTCTTGGTTTTTTCT-TTTTTTTTTG
*
880549 TTTTTGTTGGTTTTTTCCTTTTTTTTTTG
1 TTTTTCTTGGTTTTTT-CTTTTTTTTTTG
880578 TTTTT
1 TTTTT
880583 TCTATTTTTT
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
28 15 0.48
29 15 0.48
30 1 0.03
ACGTcount: A:0.00, C:0.05, G:0.13, T:0.82
Consensus pattern (28 bp):
TTTTTCTTGGTTTTTTCTTTTTTTTTTG
Found at i:880581 original size:10 final size:10
Alignment explanation
Indices: 880508--880583 Score: 64
Period size: 10 Copynumber: 7.4 Consensus size: 10
880498 CCCCTTTCTG
*
880508 TTTTTTTGCTA
1 TTTTTTTG-TT
*
880519 TTTTTTTCTT
1 TTTTTTTGTT
880529 GGTTTTTTTGTT
1 --TTTTTTTGTT
880541 TTTTTTTGTT
1 TTTTTTTGTT
* *
880551 TTTGTTGGTT
1 TTTTTTTGTT
**
880561 TTTTCCT-TT
1 TTTTTTTGTT
880570 TTTTTTTGTT
1 TTTTTTTGTT
880580 TTTT
1 TTTT
880584 CTATTTTTTT
Statistics
Matches: 51, Mismatches: 11, Indels: 7
0.74 0.16 0.10
Matches are distributed among these distances:
9 7 0.14
10 28 0.55
11 7 0.14
12 9 0.18
ACGTcount: A:0.01, C:0.05, G:0.12, T:0.82
Consensus pattern (10 bp):
TTTTTTTGTT
Found at i:880590 original size:19 final size:18
Alignment explanation
Indices: 880520--880593 Score: 78
Period size: 19 Copynumber: 3.8 Consensus size: 18
880510 TTTTTGCTAT
*
880520 TTTTTTCTTGGTTTTTTTG
1 TTTTTTCTT-TTTTTTTTG
880539 TTTTTT-TTTGTTTTTGTTGG
1 TTTTTTCTTT-TTTTT-TT-G
880559 TTTTTTCCTTTTTTTTTTG
1 TTTTTT-CTTTTTTTTTTG
880578 TTTTTTCTATTTTTTT
1 TTTTTTCT-TTTTTTT
880594 ATTTATTTAT
Statistics
Matches: 48, Mismatches: 1, Indels: 12
0.79 0.02 0.20
Matches are distributed among these distances:
18 9 0.19
19 22 0.46
20 9 0.19
21 5 0.10
22 3 0.06
ACGTcount: A:0.01, C:0.05, G:0.11, T:0.82
Consensus pattern (18 bp):
TTTTTTCTTTTTTTTTTG
Found at i:880604 original size:16 final size:17
Alignment explanation
Indices: 880570--880609 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
880560 TTTTTCCTTT
* *
880570 TTTTTTTGTTTTTTCTA
1 TTTTTTTATTTATTCTA
880587 TTTTTTTATTTATT-TA
1 TTTTTTTATTTATTCTA
880603 TTTTTTT
1 TTTTTTT
880610 CGCTATGAAG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 9 0.43
17 12 0.57
ACGTcount: A:0.10, C:0.03, G:0.03, T:0.85
Consensus pattern (17 bp):
TTTTTTTATTTATTCTA
Found at i:888148 original size:33 final size:34
Alignment explanation
Indices: 888111--888180 Score: 99
Period size: 33 Copynumber: 2.1 Consensus size: 34
888101 CTATCACTAT
888111 TTGTATCGATACATG-GGATAA-TGTATCAATACA
1 TTGTATCGATACATGAGGA-AATTGTATCAATACA
* *
888144 TTGTATCGATACATGATGAAATTGTATCGATACA
1 TTGTATCGATACATGAGGAAATTGTATCAATACA
888178 TTG
1 TTG
888181 CTTGTAACGG
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
33 17 0.52
34 16 0.48
ACGTcount: A:0.34, C:0.11, G:0.19, T:0.36
Consensus pattern (34 bp):
TTGTATCGATACATGAGGAAATTGTATCAATACA
Found at i:892610 original size:20 final size:20
Alignment explanation
Indices: 892587--892659 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
892577 ACAATTCAAA
892587 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
****
892607 GTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCA-AT
892628 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
892648 GTATCGATACAT
1 GTATCGATACAT
892660 AAAAAAGATG
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.32
Consensus pattern (20 bp):
GTATCGATACATGTTGCAAT
Done.