Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold323
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1512004
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 9 of 9
Found at i:1391268 original size:45 final size:48
Alignment explanation
Indices: 1391166--1391271 Score: 119
Period size: 45 Copynumber: 2.2 Consensus size: 48
1391156 TGTGCCAATT
* * **
1391166 CAAGGCTAGCGACATTGGGCTAAGGGAAAAGTGGACCAATGTGCTGATT
1 CAAGGCCAGCGACATTGGGCTAA-GGAAAAGTGGACCAATATGCTGACG
* *
1391215 CAAGGCCAGCGACATTGGGCTAA-TAAAGGT-G-CCAATATGCTGACG
1 CAAGGCCAGCGACATTGGGCTAAGGAAAAGTGGACCAATATGCTGACG
*
1391260 CAATGCCAGCGA
1 CAAGGCCAGCGA
1391272 TATCGAACTT
Statistics
Matches: 50, Mismatches: 7, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
45 22 0.44
46 1 0.02
47 5 0.10
49 22 0.44
ACGTcount: A:0.31, C:0.21, G:0.30, T:0.18
Consensus pattern (48 bp):
CAAGGCCAGCGACATTGGGCTAAGGAAAAGTGGACCAATATGCTGACG
Found at i:1391439 original size:28 final size:28
Alignment explanation
Indices: 1391350--1391920 Score: 576
Period size: 28 Copynumber: 20.0 Consensus size: 28
1391340 TTAAAAAAAG
*
1391350 AAGG-TGCCACTAACTTGTGTGGGCTTTGAA
1 AAGGATGCCACTGAC-T-TGTGGGCTTTG-A
* *
1391380 AAGAGTTGCCATTGACTTGTGTGGGCTTTGA
1 AAG-GATGCCACTGAC-T-TGTGGGCTTTGA
* * *
1391411 AGGGGTGCCACCGACTTGTGGGCTTTGA
1 AAGGATGCCACTGACTTGTGGGCTTTGA
*
1391439 ATGGGTATGCCACTGACTTGTGGGCTTTGA
1 A-AGG-ATGCCACTGACTTGTGGGCTTTGA
* *
1391469 AAGGGTGCCACTAACTTGTGGGCTTTGA
1 AAGGATGCCACTGACTTGTGGGCTTTGA
* * * *
1391497 AGGGGTACCACTGACTTGTGGCCTTTGA
1 AAGGATGCCACTGACTTGTGGGCTTTGA
* * *
1391525 AAGGGTGACACTGACTTGTGGCCTTTGA
1 AAGGATGCCACTGACTTGTGGGCTTTGA
* *
1391553 AAGGGTGCCACTGACTTGTGGGCTTTGG
1 AAGGATGCCACTGACTTGTGGGCTTTGA
* * * *
1391581 AAGGGTGCGACTAATTTGTGTGGACTTTGA
1 AAGGATGCCACTGACTTGTG-GG-CTTTGA
* *
1391611 AAGGGTATGCCACTGACTTGTAGGCTATGAA
1 AA-GG-ATGCCACTGACTTGTGGGCTTTG-A
*
1391642 AAGG-TGCCACTAACTTGTGGGCTTT-A
1 AAGGATGCCACTGACTTGTGGGCTTTGA
*
1391668 AAGGATGCCACTGACTTGTGGTCTTTGA
1 AAGGATGCCACTGACTTGTGGGCTTTGA
* *
1391696 AAGAGATGCCACTGACTTGAGGGCTTTAA
1 AAG-GATGCCACTGACTTGTGGGCTTTGA
1391725 AAGGATGCCACTGACTTGTGGGCTTTGA
1 AAGGATGCCACTGACTTGTGGGCTTTGA
* *
1391753 AAGGATGCCACTAACTTGTAGGCTTTGA
1 AAGGATGCCACTGACTTGTGGGCTTTGA
* *
1391781 AAGGGTGCCACTGGCTTGTGGGCTTTGA
1 AAGGATGCCACTGACTTGTGGGCTTTGA
* * * *
1391809 AAAGATGCCATTTACTTGTGGGCTTTAA
1 AAGGATGCCACTGACTTGTGGGCTTTGA
*
1391837 AAGGATTCCACTGACTTGTGGGCTTTGA
1 AAGGATGCCACTGACTTGTGGGCTTTGA
* * **
1391865 AAAGATGCCA-TATACTTGT-GGCTTCAA
1 AAGGATGCCACT-GACTTGTGGGCTTTGA
* * *
1391892 AAGGATGCCATTGACCTATGGGCTTTGA
1 AAGGATGCCACTGACTTGTGGGCTTTGA
1391920 A
1 A
1391921 GAGATGAACA
Statistics
Matches: 457, Mismatches: 69, Indels: 32
0.82 0.12 0.06
Matches are distributed among these distances:
26 5 0.01
27 39 0.09
28 288 0.63
29 33 0.07
30 48 0.11
31 11 0.02
32 33 0.07
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.30
Consensus pattern (28 bp):
AAGGATGCCACTGACTTGTGGGCTTTGA
Found at i:1393180 original size:1 final size:1
Alignment explanation
Indices: 1393176--1393227 Score: 50
Period size: 1 Copynumber: 52.0 Consensus size: 1
1393166 TGTTCATTTA
* * ** * *
1393176 TTTTTTTTTTGTTTTTTGTTTTTGGTTTTTTTATTTTTTTGTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1393228 GTACGAAGGA
Statistics
Matches: 41, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
1 41 1.00
ACGTcount: A:0.02, C:0.00, G:0.10, T:0.88
Consensus pattern (1 bp):
T
Found at i:1393213 original size:23 final size:24
Alignment explanation
Indices: 1393177--1393221 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
1393167 GTTCATTTAT
*
1393177 TTTTTTTTTGTTTTTTGTTTTTGG
1 TTTTTTTATGTTTTTTGTTTTTGG
1393201 TTTTTTTAT-TTTTTTGTTTTT
1 TTTTTTTATGTTTTTTGTTTTT
1393222 TTTTTTGTAC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 12 0.60
24 8 0.40
ACGTcount: A:0.02, C:0.00, G:0.11, T:0.87
Consensus pattern (24 bp):
TTTTTTTATGTTTTTTGTTTTTGG
Found at i:1404049 original size:13 final size:13
Alignment explanation
Indices: 1404031--1404055 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1404021 TGAGTATGTA
1404031 TGTATCGATACAT
1 TGTATCGATACAT
1404044 TGTATCGATACA
1 TGTATCGATACA
1404056 AAGCATAATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1404069 original size:20 final size:20
Alignment explanation
Indices: 1404044--1404095 Score: 104
Period size: 20 Copynumber: 2.6 Consensus size: 20
1404034 ATCGATACAT
1404044 TGTATCGATACAAAGCATAA
1 TGTATCGATACAAAGCATAA
1404064 TGTATCGATACAAAGCATAA
1 TGTATCGATACAAAGCATAA
1404084 TGTATCGATACA
1 TGTATCGATACA
1404096 TCTGGGAGTG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.42, C:0.15, G:0.15, T:0.27
Consensus pattern (20 bp):
TGTATCGATACAAAGCATAA
Found at i:1410502 original size:21 final size:21
Alignment explanation
Indices: 1410469--1410508 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
1410459 ATGCAAGTTT
*
1410469 TTATTTTGCTTAGCTAATTCA
1 TTATTTTGCTTAGCCAATTCA
1410490 TTATTTT-CATTAGCCAATT
1 TTATTTTGC-TTAGCCAATT
1410509 TTTTAATATC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 1 0.06
21 16 0.94
ACGTcount: A:0.25, C:0.15, G:0.07, T:0.53
Consensus pattern (21 bp):
TTATTTTGCTTAGCCAATTCA
Found at i:1412751 original size:13 final size:13
Alignment explanation
Indices: 1412710--1412758 Score: 54
Period size: 13 Copynumber: 4.2 Consensus size: 13
1412700 TCGTTACAAG
1412710 CAATGTATCGATA
1 CAATGTATCGATA
1412723 CAAT-T-TC-AT-
1 CAATGTATCGATA
1412732 C-ATGTATCGATA
1 CAATGTATCGATA
*
1412744 CAATGTATCAATA
1 CAATGTATCGATA
1412757 CA
1 CA
1412759 TTGTCCCATG
Statistics
Matches: 30, Mismatches: 1, Indels: 10
0.73 0.02 0.24
Matches are distributed among these distances:
8 2 0.07
9 2 0.07
10 4 0.13
11 4 0.13
12 2 0.07
13 16 0.53
ACGTcount: A:0.39, C:0.18, G:0.10, T:0.33
Consensus pattern (13 bp):
CAATGTATCGATA
Found at i:1412774 original size:33 final size:34
Alignment explanation
Indices: 1412710--1412780 Score: 101
Period size: 33 Copynumber: 2.1 Consensus size: 34
1412700 TCGTTACAAG
* *
1412710 CAATGTATCGATACAATTTCATCATGTATCGATA
1 CAATGTATCAATACAATTTCACCATGTATCGATA
1412744 CAATGTATCAATAC-ATTGTC-CCATGTATCGATA
1 CAATGTATCAATACAATT-TCACCATGTATCGATA
1412777 CAAT
1 CAAT
1412781 AGTGATAGGG
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
33 19 0.56
34 15 0.44
ACGTcount: A:0.35, C:0.20, G:0.11, T:0.34
Consensus pattern (34 bp):
CAATGTATCAATACAATTTCACCATGTATCGATA
Found at i:1414003 original size:10 final size:11
Alignment explanation
Indices: 1413981--1414009 Score: 51
Period size: 10 Copynumber: 2.7 Consensus size: 11
1413971 GAAGTTTTTA
1413981 TGAAAAATGTT
1 TGAAAAATGTT
1413992 TGAAAAAT-TT
1 TGAAAAATGTT
1414002 TGAAAAAT
1 TGAAAAAT
1414010 CATCTAGGGG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 10 0.56
11 8 0.44
ACGTcount: A:0.52, C:0.00, G:0.14, T:0.34
Consensus pattern (11 bp):
TGAAAAATGTT
Found at i:1415712 original size:20 final size:20
Alignment explanation
Indices: 1415687--1415724 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
1415677 GTAAAAAGAC
1415687 AGAATGTATCGATACATTGA
1 AGAATGTATCGATACATTGA
1415707 AGAATGTATCGATACATT
1 AGAATGTATCGATACATT
1415725 CATACATGTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.39, C:0.11, G:0.18, T:0.32
Consensus pattern (20 bp):
AGAATGTATCGATACATTGA
Found at i:1417110 original size:32 final size:33
Alignment explanation
Indices: 1417047--1417113 Score: 100
Period size: 33 Copynumber: 2.1 Consensus size: 33
1417037 GTTACAAGCA
* *
1417047 AATGTATCGATACATTTTGGGATGTATCGATAC
1 AATGCATCGATACATATTGGGATGTATCGATAC
*
1417080 AATGCATCGATACATATTGTG-TGTATCGATAC
1 AATGCATCGATACATATTGGGATGTATCGATAC
1417112 AA
1 AA
1417114 ACAGTTAAGG
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
32 13 0.42
33 18 0.58
ACGTcount: A:0.33, C:0.13, G:0.19, T:0.34
Consensus pattern (33 bp):
AATGCATCGATACATATTGGGATGTATCGATAC
Found at i:1417212 original size:13 final size:13
Alignment explanation
Indices: 1417194--1417218 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1417184 ACATTTGGCC
1417194 ATGTATCGATACA
1 ATGTATCGATACA
1417207 ATGTATCGATAC
1 ATGTATCGATAC
1417219 TGTGCAATAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1419715 original size:13 final size:13
Alignment explanation
Indices: 1419697--1419722 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1419687 ATAAACCCTT
1419697 TGTATCGATACAA
1 TGTATCGATACAA
1419710 TGTATCGATACAA
1 TGTATCGATACAA
1419723 AGAATGCTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1419937 original size:8 final size:8
Alignment explanation
Indices: 1419919--1419949 Score: 53
Period size: 8 Copynumber: 3.8 Consensus size: 8
1419909 TTTTCAACAT
1419919 CAAACATCA
1 CAAA-ATCA
1419928 CAAAATCA
1 CAAAATCA
1419936 CAAAATCA
1 CAAAATCA
1419944 CAAAAT
1 CAAAAT
1419950 TTAATCAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 18 0.82
9 4 0.18
ACGTcount: A:0.61, C:0.26, G:0.00, T:0.13
Consensus pattern (8 bp):
CAAAATCA
Found at i:1424971 original size:24 final size:24
Alignment explanation
Indices: 1424939--1424986 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
1424929 TGATACCAGT
*
1424939 TGAAAGCTCAAGGAATAATGAACC
1 TGAAAGCTCAAGGAATAACGAACC
1424963 TGAAAGCTCAAGGAATAACGAACC
1 TGAAAGCTCAAGGAATAACGAACC
1424987 AAGAGGGGGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.46, C:0.19, G:0.21, T:0.15
Consensus pattern (24 bp):
TGAAAGCTCAAGGAATAACGAACC
Found at i:1425847 original size:20 final size:21
Alignment explanation
Indices: 1425800--1425852 Score: 72
Period size: 20 Copynumber: 2.6 Consensus size: 21
1425790 GCCAATGACC
**
1425800 TGTATCGATACATCTTTTTCA
1 TGTATCGATACATCTTGGTCA
*
1425821 AGTATCGATACAT-TTGGTCA
1 TGTATCGATACATCTTGGTCA
1425841 TGTATCGATACA
1 TGTATCGATACA
1425853 ATGTATCGAT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
20 16 0.57
21 12 0.43
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.40
Consensus pattern (21 bp):
TGTATCGATACATCTTGGTCA
Found at i:1425858 original size:13 final size:13
Alignment explanation
Indices: 1425840--1425864 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1425830 ACATTTGGTC
1425840 ATGTATCGATACA
1 ATGTATCGATACA
1425853 ATGTATCGATAC
1 ATGTATCGATAC
1425865 TGTGCAACAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1427877 original size:21 final size:21
Alignment explanation
Indices: 1427846--1427897 Score: 70
Period size: 20 Copynumber: 2.4 Consensus size: 21
1427836 GCTGCTAGTG
*
1427846 TGGGGGCTGCCCGGTTGCGACC
1 TGGGGG-TGCCCGGTCGCGACC
1427868 TGGGGGTG-CCGGTCGCGACC
1 TGGGGGTGCCCGGTCGCGACC
1427888 TGGTGGGTGC
1 TGG-GGGTGC
1427898 TGCCTAGGAG
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
20 14 0.52
21 7 0.26
22 6 0.22
ACGTcount: A:0.04, C:0.27, G:0.50, T:0.19
Consensus pattern (21 bp):
TGGGGGTGCCCGGTCGCGACC
Found at i:1429317 original size:34 final size:35
Alignment explanation
Indices: 1429279--1429345 Score: 102
Period size: 37 Copynumber: 1.9 Consensus size: 35
1429269 CCTTACAACA
1429279 CTATC-TTTC-AAGGCTAAGATAGAAACCTCTCTCT
1 CTATCTTTTCAAAGGCTAAGATAG-AACCTCTCTCT
1429313 CTATCTTTTTCAAAGGCTAAGATAGAACCTCTC
1 CTATC-TTTTCAAAGGCTAAGATAGAACCTCTC
1429346 AATCACTTAG
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
34 5 0.17
36 12 0.40
37 13 0.43
ACGTcount: A:0.30, C:0.25, G:0.12, T:0.33
Consensus pattern (35 bp):
CTATCTTTTCAAAGGCTAAGATAGAACCTCTCTCT
Found at i:1429954 original size:22 final size:22
Alignment explanation
Indices: 1429901--1429954 Score: 90
Period size: 22 Copynumber: 2.5 Consensus size: 22
1429891 AACAGTTATG
*
1429901 AACAGTGATATATCGATACATA
1 AACAGTGATGTATCGATACATA
*
1429923 AACAGTGATGTATCGATAGATA
1 AACAGTGATGTATCGATACATA
1429945 AACAGTGATG
1 AACAGTGATG
1429955 AATAGTGATG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.43, C:0.11, G:0.20, T:0.26
Consensus pattern (22 bp):
AACAGTGATGTATCGATACATA
Found at i:1430018 original size:13 final size:13
Alignment explanation
Indices: 1430000--1430024 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1429990 TGTCAATGCT
1430000 ATGTATCGATACA
1 ATGTATCGATACA
1430013 ATGTATCGATAC
1 ATGTATCGATAC
1430025 TTAGCAAAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1435819 original size:13 final size:13
Alignment explanation
Indices: 1435801--1435825 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1435791 CATTTTATGG
1435801 TGTATCGATACAA
1 TGTATCGATACAA
1435814 TGTATCGATACA
1 TGTATCGATACA
1435826 TACTGTGTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1435825 original size:33 final size:32
Alignment explanation
Indices: 1435778--1435845 Score: 91
Period size: 33 Copynumber: 2.1 Consensus size: 32
1435768 CGTTACAAGC
**
1435778 CAATATATCGATACATTTTATGGTGTATCGATA
1 CAATATATCGATACATACTAT-GTGTATCGATA
* *
1435811 CAATGTATCGATACATACTGTGTGTATCGATA
1 CAATATATCGATACATACTATGTGTATCGATA
1435843 CAA
1 CAA
1435846 GTTTGGCTAC
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
32 14 0.45
33 17 0.55
ACGTcount: A:0.34, C:0.15, G:0.16, T:0.35
Consensus pattern (32 bp):
CAATATATCGATACATACTATGTGTATCGATA
Found at i:1435922 original size:20 final size:21
Alignment explanation
Indices: 1435877--1435929 Score: 72
Period size: 20 Copynumber: 2.6 Consensus size: 21
1435867 GCCAATGACC
** *
1435877 TGTATCGATACATCTTTTTCA
1 TGTATCGATACATCTTGGTAA
1435898 TGTATCGATACAT-TTGGTAA
1 TGTATCGATACATCTTGGTAA
1435918 TGTATCGATACA
1 TGTATCGATACA
1435930 ATGTATCGAT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
20 16 0.55
21 13 0.45
ACGTcount: A:0.28, C:0.15, G:0.15, T:0.42
Consensus pattern (21 bp):
TGTATCGATACATCTTGGTAA
Found at i:1435934 original size:13 final size:13
Alignment explanation
Indices: 1435916--1435941 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1435906 TACATTTGGT
1435916 AATGTATCGATAC
1 AATGTATCGATAC
1435929 AATGTATCGATAC
1 AATGTATCGATAC
1435942 TGTGCAACAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
AATGTATCGATAC
Found at i:1437018 original size:19 final size:20
Alignment explanation
Indices: 1436973--1437024 Score: 79
Period size: 20 Copynumber: 2.6 Consensus size: 20
1436963 TTACAAGCCA
*
1436973 ATGTATCGATACATTTTGGG
1 ATGTATCGATACATATTGGG
*
1436993 ATGTATCGATACATATTGTG
1 ATGTATCGATACATATTGGG
1437013 -TGTATCGATACA
1 ATGTATCGATACA
1437025 AACATTTAAG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
19 12 0.40
20 18 0.60
ACGTcount: A:0.29, C:0.12, G:0.21, T:0.38
Consensus pattern (20 bp):
ATGTATCGATACATATTGGG
Found at i:1437124 original size:13 final size:13
Alignment explanation
Indices: 1437106--1437130 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1437096 ACATTTGGTC
1437106 ATGTATCGATACA
1 ATGTATCGATACA
1437119 ATGTATCGATAC
1 ATGTATCGATAC
1437131 TGTGCAATAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1442209 original size:29 final size:29
Alignment explanation
Indices: 1442151--1442530 Score: 398
Period size: 28 Copynumber: 13.1 Consensus size: 29
1442141 CTTCAAAAAA
* *
1442151 CCACAAGTCAGTGGCAT-TTTTTTAAAGC
1 CCACAAGTCAGTGGCATCCTTTTCAAAGC
* * * *
1442179 CCATAAGTCAGCGGTATCCTTCTCAAAGC
1 CCACAAGTCAGTGGCATCCTTTTCAAAGC
*
1442208 CCACAAGTCAGTGGCATCCTTCTCAAAGC
1 CCACAAGTCAGTGGCATCCTTTTCAAAGC
1442237 CCACAAGTC-GATGGCATCCTTTTCAAAGC
1 CCACAAGTCAG-TGGCATCCTTTTCAAAGC
* *
1442266 CCACAAGTTAGTGGCAT-CTTTTCAAATC
1 CCACAAGTCAGTGGCATCCTTTTCAAAGC
* * *
1442294 TCACAAGTTAGTGCCATCC-TTTCAAAGC
1 CCACAAGTCAGTGGCATCCTTTTCAAAGC
* *
1442322 CCACAAGTCAGTGCCATCC-TTTCAATGC
1 CCACAAGTCAGTGGCATCCTTTTCAAAGC
* * *
1442350 CCATAAGTTAGTGGCA-CCATTTCAAAGC
1 CCACAAGTCAGTGGCATCCTTTTCAAAGC
* * *
1442378 TCACAAGTCAATGGCA-CATTTTCAAAGC
1 CCACAAGTCAGTGGCATCCTTTTCAAAGC
*
1442406 CCACAAGTCAGTGGCACCCTTTTCAAAGC
1 CCACAAGTCAGTGGCATCCTTTTCAAAGC
** *
1442435 CCACAAG-CTAGTGATAACTCTTTTCAAAGC
1 CCACAAGTC-AGTGGCATC-CTTTTCAAAGC
* *
1442465 CCACAAGTCAGTGGTAACTCTTTTCAAAGCC
1 CCACAAGTCAGTGGCATC-CTTTTCAAAG-C
*
1442496 CACACAAGTCAGTGGCAACTCTTTTCAAAGC
1 C-CACAAGTCAGTGGCATC-CTTTTCAAAGC
1442527 CCAC
1 CCAC
1442531 CTTTTTTTAA
Statistics
Matches: 305, Mismatches: 36, Indels: 20
0.84 0.10 0.06
Matches are distributed among these distances:
27 2 0.01
28 131 0.43
29 99 0.32
30 41 0.13
31 5 0.02
32 27 0.09
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.25
Consensus pattern (29 bp):
CCACAAGTCAGTGGCATCCTTTTCAAAGC
Found at i:1443495 original size:20 final size:20
Alignment explanation
Indices: 1443464--1443534 Score: 88
Period size: 20 Copynumber: 3.5 Consensus size: 20
1443454 TTTTACCTAG
*
1443464 ATGTATCAATACATTTTTCA
1 ATGTATCGATACATTTTTCA
* * * *
1443484 ACGTATCGATACATGTATGA
1 ATGTATCGATACATTTTTCA
*
1443504 ATGTATCGATACATTCTTCA
1 ATGTATCGATACATTTTTCA
1443524 ATGTATCGATA
1 ATGTATCGATA
1443535 TATTCTATCT
Statistics
Matches: 41, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.34, C:0.15, G:0.13, T:0.38
Consensus pattern (20 bp):
ATGTATCGATACATTTTTCA
Found at i:1453947 original size:39 final size:39
Alignment explanation
Indices: 1453903--1453981 Score: 158
Period size: 39 Copynumber: 2.0 Consensus size: 39
1453893 GAGTGACTAG
1453903 AATAAAACTTAAGTAAAAAAAAAGGTTAACCGGGGTGAA
1 AATAAAACTTAAGTAAAAAAAAAGGTTAACCGGGGTGAA
1453942 AATAAAACTTAAGTAAAAAAAAAGGTTAACCGGGGTGAA
1 AATAAAACTTAAGTAAAAAAAAAGGTTAACCGGGGTGAA
1453981 A
1 A
1453982 CTTGTAAACA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.54, C:0.08, G:0.20, T:0.18
Consensus pattern (39 bp):
AATAAAACTTAAGTAAAAAAAAAGGTTAACCGGGGTGAA
Found at i:1454375 original size:20 final size:20
Alignment explanation
Indices: 1454347--1454386 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
1454337 TGCATACTGC
1454347 CAAGGAAATGTATCGATACA
1 CAAGGAAATGTATCGATACA
*
1454367 CAAGTAAATGTATCGATACA
1 CAAGGAAATGTATCGATACA
1454387 TTTTTACAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.45, C:0.15, G:0.17, T:0.23
Consensus pattern (20 bp):
CAAGGAAATGTATCGATACA
Found at i:1454420 original size:20 final size:22
Alignment explanation
Indices: 1454375--1454426 Score: 81
Period size: 22 Copynumber: 2.5 Consensus size: 22
1454365 CACAAGTAAA
*
1454375 TGTATCGATACATTTTTACAAT
1 TGTATCGATACATTTCTACAAT
1454397 TGTATCGATACATTTCT-C-AT
1 TGTATCGATACATTTCTACAAT
1454417 TGTATCGATA
1 TGTATCGATA
1454427 TATTCTGGGT
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
20 12 0.41
21 1 0.03
22 16 0.55
ACGTcount: A:0.29, C:0.15, G:0.12, T:0.44
Consensus pattern (22 bp):
TGTATCGATACATTTCTACAAT
Found at i:1455206 original size:21 final size:22
Alignment explanation
Indices: 1455182--1455229 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
1455172 TGGTATATCC
1455182 TTTCTA-CTTTGATCTTTTTGG
1 TTTCTATCTTTGATCTTTTTGG
* *
1455203 TTTCTATTTTTTATCTTTTTGG
1 TTTCTATCTTTGATCTTTTTGG
1455225 TTTCT
1 TTTCT
1455230 TTTCTGTTTC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
21 6 0.25
22 18 0.75
ACGTcount: A:0.08, C:0.12, G:0.10, T:0.69
Consensus pattern (22 bp):
TTTCTATCTTTGATCTTTTTGG
Found at i:1456067 original size:50 final size:50
Alignment explanation
Indices: 1456012--1456133 Score: 145
Period size: 50 Copynumber: 2.4 Consensus size: 50
1456002 GTTATTTTTG
* * * *
1456012 AGGGGACACTTCAACCCCATTTTTATTTTCAAAGATGTTAAATTTACCAT
1 AGGGGACACTCCAACCCCATTTTTATTTCCAAAAATATTAAATTTACCAT
* **
1456062 AGGGGATACTCCAACCCCATTTTTATTTCCAAAAATATTAAATTTTTCAT
1 AGGGGACACTCCAACCCCATTTTTATTTCCAAAAATATTAAATTTACCAT
* *
1456112 CACGAGGATACTCCAACCCCAT
1 -A-GGGGACACTCCAACCCCAT
1456134 CAATTCTGAG
Statistics
Matches: 62, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
50 43 0.69
51 1 0.02
52 18 0.29
ACGTcount: A:0.33, C:0.24, G:0.11, T:0.33
Consensus pattern (50 bp):
AGGGGACACTCCAACCCCATTTTTATTTCCAAAAATATTAAATTTACCAT
Found at i:1457810 original size:67 final size:64
Alignment explanation
Indices: 1457735--1457915 Score: 186
Period size: 65 Copynumber: 2.8 Consensus size: 64
1457725 TCTAGGGTAA
* * *****
1457735 AAAT-GATAAAGTCAACTAAAAGAGACCAGGGTGAAACCTAAGTAAAAAAAGTTATTGATTTGCA
1 AAATCGATAAAGTCAACTAAAAGAGACCACGATGAAACCTAAGTAAAAAAAG---TTGACCAAAA
*
1457799 TG
63 CG
* * *
1457801 AAATCGATAAAGTCAACTAAAAGTGACTACGATGAAACCTAAGTCGAAAAAAGTTGACCAAAACG
1 AAATCGATAAAGTCAACTAAAAGAGACCACGATGAAACCTAAGT-AAAAAAAGTTGACCAAAACG
* *
1457866 AAATCGATAAAGTCAACT-AAAGAAGACCATGATGAAACCTAAGTCAAAAA
1 AAATCGATAAAGTCAACTAAAAG-AGACCACGATGAAACCTAAGTAAAAAA
1457916 GGGCGTTGAC
Statistics
Matches: 97, Mismatches: 15, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
64 9 0.09
65 42 0.43
66 4 0.04
67 35 0.36
68 7 0.07
ACGTcount: A:0.50, C:0.14, G:0.17, T:0.19
Consensus pattern (64 bp):
AAATCGATAAAGTCAACTAAAAGAGACCACGATGAAACCTAAGTAAAAAAAGTTGACCAAAACG
Found at i:1457810 original size:134 final size:134
Alignment explanation
Indices: 1457600--1457853 Score: 295
Period size: 134 Copynumber: 1.9 Consensus size: 134
1457590 TGACCAAGAC
* ** *
1457600 AAAATTGATAAGTCAACTAAGGGTGACCAGGGTAAAACCTAAGTAAAAAAAAGAGTTGACTATAG
1 AAAAATGATAAGTCAACTAAAAGAGACCAGGGTAAAACCTAAGTAAAAAAAAGAGTTGACTATAG
* *
1457665 CAAAATAGATAAAGTTAAATAAAGGTAACTA-GAACAAAACCTAAGTC-AAAAAAGGTGTCATCT
66 CAAAATAGATAAAGTCAAATAAAAGTAACTACG-ACAAAACCTAAGTCGAAAAAAGGTGTCATCT
1457728 AGGGT
130 AGGGT
*
1457733 AAAAATGATAAAGTCAACTAAAAGAGACCAGGGTGAAACCTAAGT-AAAAAAAGTTA-TTGA-T-
1 AAAAATGAT-AAGTCAACTAAAAGAGACCAGGGTAAAACCTAAGTAAAAAAAAG--AGTTGACTA
* * * * **
1457794 TTGCATGAAATCGATAAAGTCAACTAAAAGTGACTACGATGAAACCTAAGTCGAAAAAAG
63 TAGCA--AAATAGATAAAGTCAAATAAAAGTAACTACGACAAAACCTAAGTCGAAAAAAG
1457854 TTGACCAAAA
Statistics
Matches: 101, Mismatches: 13, Indels: 12
0.80 0.10 0.10
Matches are distributed among these distances:
132 4 0.04
133 17 0.17
134 71 0.70
135 9 0.09
ACGTcount: A:0.49, C:0.12, G:0.19, T:0.20
Consensus pattern (134 bp):
AAAAATGATAAGTCAACTAAAAGAGACCAGGGTAAAACCTAAGTAAAAAAAAGAGTTGACTATAG
CAAAATAGATAAAGTCAAATAAAAGTAACTACGACAAAACCTAAGTCGAAAAAAGGTGTCATCTA
GGGT
Found at i:1457837 original size:34 final size:35
Alignment explanation
Indices: 1457798--1457886 Score: 82
Period size: 31 Copynumber: 2.7 Consensus size: 35
1457788 ATTGATTTGC
* **
1457798 ATGAAATCGATAAAGTCAACTAAAAG-TGACTACG
1 ATGAAATCGATAAAGTCAACTAAAAGTTGACCAAA
*
1457832 ATGAAA-C-CT-AAGTCGAA--AAAAGTTGACCAAA
1 ATGAAATCGATAAAGTC-AACTAAAAGTTGACCAAA
*
1457863 ACGAAATCGATAAAGTCAACTAAA
1 ATGAAATCGATAAAGTCAACTAAA
1457887 GAAGACCATG
Statistics
Matches: 42, Mismatches: 6, Indels: 13
0.69 0.10 0.21
Matches are distributed among these distances:
30 5 0.12
31 15 0.36
32 4 0.10
33 4 0.10
34 11 0.26
35 3 0.07
ACGTcount: A:0.51, C:0.16, G:0.16, T:0.18
Consensus pattern (35 bp):
ATGAAATCGATAAAGTCAACTAAAAGTTGACCAAA
Found at i:1457957 original size:32 final size:33
Alignment explanation
Indices: 1457898--1457959 Score: 81
Period size: 32 Copynumber: 1.9 Consensus size: 33
1457888 AAGACCATGA
*
1457898 TGAAACCTAAGTCAAAAAGGGCGTTGACTAAGG
1 TGAAACCTAAGTCAAAAAGGGCATTGACTAAGG
* * *
1457931 TGAAACTTAAGTC-GAAAGGGTATTGACTA
1 TGAAACCTAAGTCAAAAAGGGCATTGACTA
1457960 GGGCAAAATT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
32 13 0.52
33 12 0.48
ACGTcount: A:0.39, C:0.13, G:0.26, T:0.23
Consensus pattern (33 bp):
TGAAACCTAAGTCAAAAAGGGCATTGACTAAGG
Found at i:1458034 original size:33 final size:33
Alignment explanation
Indices: 1457900--1458034 Score: 91
Period size: 33 Copynumber: 4.1 Consensus size: 33
1457890 GACCATGATG
* * **
1457900 AAACCTAAGTCAAAAAGGGCGTTGACTAAGGTG
1 AAACCTAAGTCAAAAAGGGTGTTGACTAGGGCA
* * *
1457933 AAACTTAAGTC-GAAAGGGTATTGACTAGGGCA
1 AAACCTAAGTCAAAAAGGGTGTTGACTAGGGCA
** * **
1457965 AAATTGATAAGTCAACTAAA---AG-TGACTAGGATA
1 AAA--CCTAAGTCAA--AAAGGGTGTTGACTAGGGCA
1457998 AAACCTAAGTCAAAAAGGGTGTTGACTAGGGCA
1 AAACCTAAGTCAAAAAGGGTGTTGACTAGGGCA
1458031 AAAC
1 AAAC
1458035 AAATAAAATC
Statistics
Matches: 74, Mismatches: 19, Indels: 18
0.67 0.17 0.16
Matches are distributed among these distances:
29 3 0.04
31 8 0.11
32 19 0.26
33 35 0.47
34 6 0.08
37 3 0.04
ACGTcount: A:0.42, C:0.13, G:0.24, T:0.20
Consensus pattern (33 bp):
AAACCTAAGTCAAAAAGGGTGTTGACTAGGGCA
Found at i:1458069 original size:67 final size:67
Alignment explanation
Indices: 1457923--1459105 Score: 568
Period size: 67 Copynumber: 18.0 Consensus size: 67
1457913 AAAGGGCGTT
* * * *
1457923 GACTAAGG-TGAAACTTAAGTC-GAAAGGGTATTGACTAGGGCAAAATTGAT-AAGTCAACTAAA
1 GACT-AGGATGAAACCTAAGTCAAAAAGGGTGTTGACTAGGGCAAAACTGATAAAGTCAACTAAA
*
1457985 AGT
65 AGA
* ** *
1457988 GACTAGGATAAAACCTAAGTCAAAAAGGGTGTTGACTAGGGCAAAACAAATAAAATCAACTAAAA
1 GACTAGGATGAAACCTAAGTCAAAAAGGGTGTTGACTAGGGCAAAACTGATAAAGTCAACTAAAA
1458053 GA
66 GA
** * * ** ** *
1458055 GACTAGGATGAAACCTAAGT-AAAAA--GAATTAACCAATGTGAAACTGATAAAATCAACT-AAA
1 GACTAGGATGAAACCTAAGTCAAAAAGGGTGTTGACTAGGGCAAAACTGATAAAGTCAACTAAAA
*
1458116 GTT
66 G-A
* * * * ** *
1458119 GACTAGGA-CAATACATAAGTCAAAAAAGGTGTTGACCAGGGTGAAACTGATAAAGTAAACTAAA
1 GACTAGGATGAA-ACCTAAGTCAAAAAGGGTGTTGACTAGGGCAAAACTGATAAAGTCAACTAAA
*
1458183 GGA
65 AGA
* * * ** * *
1458186 TACCAAGGCA--AAACTTAAGTTGAAAAGGGTGTTGGCTAGGGCAAAA-TCGATAAAGTTAACTA
1 GA-CTAGG-ATGAAACCTAAGTCAAAAAGGGTGTTGACTAGGGCAAAACT-GATAAAGTCAACTA
1458248 AAA-A
63 AAAGA
** ** * ** *
1458252 TGACTAGGAAAAAACCTAAGTTGAAAAGGGTGTTAACTAGATCAAAA-TAAATAAAGTCAACTAA
1 -GACTAGGATGAAACCTAAGTCAAAAAGGGTGTTGACTAGGGCAAAACT-GATAAAGTCAACTAA
*
1458316 AAGT
64 AAGA
* * * * * * *
1458320 GACTAGGACGAAACCTAAGTCAAAAAAGTTGTTGACTAGGGTAAAACTAATAAAGACAACTAAAG
1 GACTAGGATGAAACCTAAGTCAAAAAGGGTGTTGACTAGGGCAAAACTGATAAAGTCAACTAAAA
1458385 GA
66 GA
* * * ** ** * * * ** *
1458387 AATTA-TAACAGAACCTAAGTTGAAAA-GG-GTTAACAAGGGTAAAACCAATGAAGTCAACTAAA
1 GACTAGGATGA-AACCTAAGTCAAAAAGGGTGTTGACTAGGGCAAAACTGATAAAGTCAACTAAA
* *
1458449 GGT
65 AGA
** * *
1458452 GACTAGGATGAAACCTAAGTTGAAAAGGGTGTTAACTAAGGTG-AAATC-GATAAAGTCAACTAA
1 GACTAGGATGAAACCTAAGTCAAAAAGGGTGTTGACT-AGG-GCAAAACTGATAAAGTCAACTAA
*
1458515 AGGA
64 AAGA
* * * ** * ** ** *
1458519 GACCAAG-TGAAACCTAAGTAAAAAAAAGTGTTAACTAGGGTGAAACCAATAAAGTCAACTTAAA
1 GACTAGGATGAAACCTAAGTCAAAAAGGGTGTTGACTAGGGCAAAACTGATAAAGTCAACTAAAA
*
1458583 GT
66 GA
** * * ** * *
1458585 GGTTA-GAGTGAAACCTAAGTCGAAAAA--GAGTTGACTAGAGTGAAACCGATAAAGTTAACTAA
1 GACTAGGA-TGAAACCTAAGTC-AAAAAGGGTGTTGACTAGGGCAAAACTGATAAAGTCAACTAA
* *
1458647 AGGT
64 AAGA
* * * * * *
1458651 GACTAGGACGAAACCTAAGT------TGGTGTTGGCCA-GGCGAAACTGATAAAGTCAA-TTAAA
1 GACTAGGATGAAACCTAAGTCAAAAAGGGTGTTGACTAGGGCAAAACTGATAAAGTCAACTAAAA
1458708 GA
66 GA
* * * * * *
1458710 TGACTAGGGTGAAACCTAAGTCGAAAAGGTTGTT-AGCCAGGGCAAAATTGATAAACTCAACTAA
1 -GACTAGGATGAAACCTAAGTCAAAAAGGGTGTTGA-CTAGGGCAAAACTGATAAAGTCAACTAA
1458774 AA-A
64 AAGA
* ** * ** *
1458777 TGACTAGGATGAAACCTAAGTAAAAAAAAGTGTT-AC-----CCAAGGTAATAAAGTCAACTAAA
1 -GACTAGGATGAAACCTAAGTCAAAAAGGGTGTTGACTAGGGCAAAACTGATAAAGTCAACTAAA
1458836 AGA
65 AGA
* * * *
1458839 GACTAGG--GCAAAGCCTAAGTCGAAAAGAGTATTGACTGAGGTG--AAATTGATAAAGTCAAC-
1 GACTAGGATG-AAA-CCTAAGTCAAAAAGGGTGTTGACT-AGG-GCAAAACTGATAAAGTCAACT
*
1458899 CAAAG-
62 AAAAGA
* * * * * * * *
1458904 GAC-ATGAGAGGAAAACCTTAGTCCAAAAGGGTGTTAACCAAGGCAAAATTGATAAAGTCAACAA
1 GACTA-G-GATG-AAACCTAAGTCAAAAAGGGTGTTGACTAGGGCAAAACTGATAAAGTCAACTA
*
1458968 AAAGT
63 AAAGA
* * * * * * *
1458973 GACTAGGATGAAACGTAAGTCAAAAAAGGTATTGACTAGTGCAAAACTAATAAAGTCAACTAGAG
1 GACTAGGATGAAACCTAAGTCAAAAAGGGTGTTGACTAGGGCAAAACTGATAAAGTCAACTAAAA
1459038 GA
66 GA
* * * * * * **
1459040 GACCAGCG-CGAAACCTAAATCGAAAAGAGTATTGACTAGGGCAAAACCAATAAAGTCAACTAAA
1 GACTAG-GATGAAACCTAAGTCAAAAAGGGTGTTGACTAGGGCAAAACTGATAAAGTCAACTAAA
1459104 AG
65 AG
1459106 TAACTTAGGT
Statistics
Matches: 864, Mismatches: 192, Indels: 122
0.73 0.16 0.10
Matches are distributed among these distances:
59 5 0.01
60 37 0.04
61 49 0.06
62 3 0.00
63 6 0.01
64 43 0.05
65 82 0.09
66 146 0.17
67 448 0.52
68 38 0.04
69 6 0.01
70 1 0.00
ACGTcount: A:0.46, C:0.13, G:0.22, T:0.20
Consensus pattern (67 bp):
GACTAGGATGAAACCTAAGTCAAAAAGGGTGTTGACTAGGGCAAAACTGATAAAGTCAACTAAAA
GA
Found at i:1458386 original size:201 final size:198
Alignment explanation
Indices: 1458101--1458583 Score: 501
Period size: 199 Copynumber: 2.4 Consensus size: 198
1458091 TGTGAAACTG
* * *
1458101 ATAAAATCAACT-AAAGTTGACTAGGAC-AATACATAAGTCAAAAAAGGTGTTGACCAGGGTGAA
1 ATAAAGTCAACTAAAAG-TGACTAGGACGAA-ACCTAAGTCAAAAAA-GTGTTGACTAGGGTGAA
* * * * ** *
1458164 ACTGATAAAGTA-AACTAAAGGATACCA-AGGCAAAACTTAAGTTGAAAAGGGTGTTGGCTAGGG
63 ACTAATAAAG-ACAACTAAAGGAAACCATA-ACAAAACCTAAGTTGAAAA-GG-GTTAACAAGGG
* * *
1458227 CAAAATCGATAAAGTTAACTAAAAATGACTAGGAAAAAACCTAAGTTGAAAAGGGTGTTAACT-A
124 CAAAACCAATAAAGTCAACTAAAAATGACTAGGAAAAAACCTAAGTTGAAAAGGGTGTTAACTAA
1458291 GATCAAAATAA
189 GAT-AAAATAA
*
1458302 ATAAAGTCAACTAAAAGTGACTAGGACGAAACCTAAGTCAAAAAAGTTGTTGACTAGGGTAAAAC
1 ATAAAGTCAACTAAAAGTGACTAGGACGAAACCTAAGTCAAAAAAG-TGTTGACTAGGGTGAAAC
** * *
1458367 TAATAAAGACAACTAAAGGAAATTATAACAGAACCTAAGTTGAAAAGGGTTAACAAGGGTAAAAC
65 TAATAAAGACAACTAAAGGAAACCATAACAAAACCTAAGTTGAAAAGGGTTAACAAGGGCAAAAC
* ** ** * *
1458432 CAATGAAGTCAACTAAAGGTGACTAGGATGAAACCTAAGTTGAAAAGGGTGTTAACTAAGGTGAA
130 CAATAAAGTCAACTAAAAATGACTAGGAAAAAACCTAAGTTGAAAAGGGTGTTAACTAAGATAAA
**
1458497 ATCG
195 ATAA
* * * * * * *
1458501 ATAAAGTCAACTAAAGGAGACCAAG-TGAAACCTAAGTAAAAAAAAGTGTTAACTAGGGTGAAAC
1 ATAAAGTCAACTAAAAGTGACTAGGACGAAACCTAAGT-CAAAAAAGTGTTGACTAGGGTGAAAC
* *
1458565 CAATAAAGTCAACTTAAAG
65 TAATAAAGACAAC-TAAAG
1458584 TGGTTAGAGT
Statistics
Matches: 237, Mismatches: 37, Indels: 18
0.81 0.13 0.06
Matches are distributed among these distances:
198 38 0.16
199 99 0.42
200 7 0.03
201 86 0.36
202 7 0.03
ACGTcount: A:0.47, C:0.12, G:0.21, T:0.20
Consensus pattern (198 bp):
ATAAAGTCAACTAAAAGTGACTAGGACGAAACCTAAGTCAAAAAAGTGTTGACTAGGGTGAAACT
AATAAAGACAACTAAAGGAAACCATAACAAAACCTAAGTTGAAAAGGGTTAACAAGGGCAAAACC
AATAAAGTCAACTAAAAATGACTAGGAAAAAACCTAAGTTGAAAAGGGTGTTAACTAAGATAAAA
TAA
Found at i:1458505 original size:132 final size:134
Alignment explanation
Indices: 1458264--1458518 Score: 320
Period size: 132 Copynumber: 1.9 Consensus size: 134
1458254 ACTAGGAAAA
* *
1458264 AACCTAAGTTGAAAAGGGTGTTAACTAGATCAAAATAAATAAAGTCAACTAAAAGTGACTAGGAC
1 AACCTAAGTTGAAAAGGGTGTTAACAAGATCAAAACAAATAAAGTCAACTAAAAGTGACTAGGAC
* * *
1458329 GAAACCTAAGTCAAAAAAGTTGTTGACTAGGGTAAAACTAATAAAGACAACTAAAGGAAATTATA
66 GAAACCTAAGTCAAAAAAGGTGTTAACTAAGGTAAAACTAATAAAGACAACTAAAGGAAATTATA
1458394 ACAG
131 ACAG
* * * *
1458398 AACCTAAGTTGAAAA-GG-GTTAACAAGGGT-AAAACCAATGAAGTCAACTAAAGGTGACTAGGA
1 AACCTAAGTTGAAAAGGGTGTTAACAA-GATCAAAACAAATAAAGTCAACTAAAAGTGACTAGGA
* ** * * * *
1458460 TGAAACCTAAGTTGAAAAGGGTGTTAACTAAGGTGAAA-TCGATAAAGTCAACTAAAGGA
65 CGAAACCTAAGTCAAAAAAGGTGTTAACTAAGGTAAAACT-AATAAAGACAACTAAAGGA
1458519 GACCAAGTGA
Statistics
Matches: 103, Mismatches: 16, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
131 1 0.01
132 83 0.81
133 4 0.04
134 15 0.15
ACGTcount: A:0.47, C:0.12, G:0.21, T:0.20
Consensus pattern (134 bp):
AACCTAAGTTGAAAAGGGTGTTAACAAGATCAAAACAAATAAAGTCAACTAAAAGTGACTAGGAC
GAAACCTAAGTCAAAAAAGGTGTTAACTAAGGTAAAACTAATAAAGACAACTAAAGGAAATTATA
ACAG
Found at i:1458546 original size:199 final size:199
Alignment explanation
Indices: 1458235--1458672 Score: 492
Period size: 199 Copynumber: 2.2 Consensus size: 199
1458225 GGCAAAATCG
** *
1458235 ATAAAGTTAACTAAAAATGACTAGGAAAAAACCTAAGTTGAAAAGGGTGTTAACTAGATCAAAAT
1 ATAAAGTTAACTAAAGGTGACTAGGAAGAAACCTAAGTTGAAAAGGGTGTTAACTAGATCAAAAT
* * * * *
1458300 AAATAAAGTCAACTAAAAGTGACTAGGACGAAACCTAAGTCAAAAAAGTTGTTGACTAGGGTAAA
66 AAATAAAGTCAACTAAAAGAGACCAAGACGAAACCTAAGTAAAAAAAG-TGTTAACTAGGGTAAA
* * * *
1458365 ACTAATAAAGACAAC-TAAAG-GAAATTATAACAG-AACCTAAGTTG-AAAAGGGTTAACAAGGG
130 ACCAATAAAGACAACTTAAAGTG--ATTA-AACAGAAACCTAAGTCGAAAAAGAGTTAACAAGAG
1458426 TAAAACCA
192 TAAAACCA
* * * * *
1458434 ATGAAGTCAACTAAAGGTGACTAGGATGAAACCTAAGTTGAAAAGGGTGTTAACTAAGGT-GAAA
1 ATAAAGTTAACTAAAGGTGACTAGGAAGAAACCTAAGTTGAAAAGGGTGTTAACT-AGATCAAAA
** * * *
1458498 TCGATAAAGTCAACTAAAGGAGACCAAG-TGAAACCTAAGTAAAAAAAAGTGTTAACTAGGGTGA
65 TAAATAAAGTCAACTAAAAGAGACCAAGACGAAACCTAAGT-AAAAAAAGTGTTAACTAGGGTAA
* * * ** * * *
1458562 AACCAATAAAGTCAACTTAAAGTGGTTAGAGTGAAACCTAAGTCGAAAAAGAGTTGACTAGAGTG
129 AACCAATAAAGACAACTTAAAGTGATTAAACAGAAACCTAAGTCGAAAAAGAGTTAACAAGAGTA
*
1458627 AAACCG
194 AAACCA
*
1458633 ATAAAGTTAACTAAAGGTGACTAGGACGAAACCTAAGTTG
1 ATAAAGTTAACTAAAGGTGACTAGGAAGAAACCTAAGTTG
1458673 GTGTTGGCCA
Statistics
Matches: 199, Mismatches: 34, Indels: 12
0.81 0.14 0.05
Matches are distributed among these distances:
197 2 0.01
198 51 0.26
199 142 0.71
200 4 0.02
ACGTcount: A:0.47, C:0.12, G:0.21, T:0.20
Consensus pattern (199 bp):
ATAAAGTTAACTAAAGGTGACTAGGAAGAAACCTAAGTTGAAAAGGGTGTTAACTAGATCAAAAT
AAATAAAGTCAACTAAAAGAGACCAAGACGAAACCTAAGTAAAAAAAGTGTTAACTAGGGTAAAA
CCAATAAAGACAACTTAAAGTGATTAAACAGAAACCTAAGTCGAAAAAGAGTTAACAAGAGTAAA
ACCA
Found at i:1458597 original size:133 final size:132
Alignment explanation
Indices: 1458301--1458649 Score: 332
Period size: 132 Copynumber: 2.6 Consensus size: 132
1458291 GATCAAAATA
* * * * * * *
1458301 AATAAAGTCAACTAAAAGTGACTAGGACGAAACCTAAGTCAAAAAAGTTGTTGACTAGGGTAAAA
1 AATAAAGTCAACTAAAGGTGACTAGGATGAAACCTAAGTCGAAAAAG-AGTTAACTAGAGTGAAA
** * * ** ** **
1458366 CTAATAAAGACAACTAAAGGAAATTATA-ACAGAACCTAAGT--TGAAAAGGGTTAACAAGGGTA
65 CCGATAAAGTCAACTAAAGGAGACCA-AGTGA-AACCTAAGTAAAAAAAAGGGTTAACAAGGGTA
1458428 AAACC
128 AAACC
* * * *
1458433 AATGAAGTCAACTAAAGGTGACTAGGATGAAACCTAAGTTGAAAAGGGTGTTAACTA-AGGTGAA
1 AATAAAGTCAACTAAAGGTGACTAGGATGAAACCTAAGTCGAAAA-AGAGTTAACTAGA-GTGAA
* * * *
1458497 ATCGATAAAGTCAACTAAAGGAGACCAAGTGAAACCTAAGTAAAAAAAAGTGTTAACTAGGGTGA
64 ACCGATAAAGTCAACTAAAGGAGACCAAGTGAAACCTAAGTAAAAAAAAGGGTTAACAAGGGTAA
1458562 AACC
129 AACC
** *
1458566 AATAAAGTCAACTTAAA-GTGGTTA-GAGTGAAACCTAAGTCGAAAAAGAGTTGACTAGAGTGAA
1 AATAAAGTCAAC-TAAAGGTGACTAGGA-TGAAACCTAAGTCGAAAAAGAGTTAACTAGAGTGAA
*
1458629 ACCGATAAAGTTAACTAAAGG
64 ACCGATAAAGTCAACTAAAGG
1458650 TGACTAGGAC
Statistics
Matches: 177, Mismatches: 32, Indels: 16
0.79 0.14 0.07
Matches are distributed among these distances:
131 10 0.06
132 107 0.60
133 56 0.32
134 4 0.02
ACGTcount: A:0.47, C:0.12, G:0.21, T:0.20
Consensus pattern (132 bp):
AATAAAGTCAACTAAAGGTGACTAGGATGAAACCTAAGTCGAAAAAGAGTTAACTAGAGTGAAAC
CGATAAAGTCAACTAAAGGAGACCAAGTGAAACCTAAGTAAAAAAAAGGGTTAACAAGGGTAAAA
CC
Found at i:1459121 original size:67 final size:66
Alignment explanation
Indices: 1458955--1459123 Score: 171
Period size: 67 Copynumber: 2.5 Consensus size: 66
1458945 GGCAAAATTG
* * * * *
1458955 ATAAAGTCAACAAAAAGTGACTAGGATGAAACGTAAGTCAAAAAAGGTATTGACTAGTGCAAAAC
1 ATAAAGTCAACTAAAAGTAACTAGG-TGAAACCTAAATCAAAAAAGGTATTGACTAGGGCAAAAC
*
1459020 TA
65 CA
* * * * *
1459022 ATAAAGTCAACT-AGAGGAGACCAGCGCGAAACCTAAATC-GAAAAGAGTATTGACTAGGGCAAA
1 ATAAAGTCAACTAAAAGTA-ACTAG-GTGAAACCTAAATCAAAAAAG-GTATTGACTAGGGCAAA
1459085 ACCA
63 ACCA
*
1459089 ATAAAGTCAACTAAAAGTAACTTAGGTAAAACCTA
1 ATAAAGTCAACTAAAAGTAAC-TAGGTGAAACCTA
1459124 CGTTGAAATG
Statistics
Matches: 81, Mismatches: 16, Indels: 10
0.76 0.15 0.09
Matches are distributed among these distances:
66 8 0.10
67 66 0.81
68 7 0.09
ACGTcount: A:0.48, C:0.15, G:0.19, T:0.18
Consensus pattern (66 bp):
ATAAAGTCAACTAAAAGTAACTAGGTGAAACCTAAATCAAAAAAGGTATTGACTAGGGCAAAACC
A
Found at i:1459951 original size:13 final size:13
Alignment explanation
Indices: 1459910--1459963 Score: 64
Period size: 13 Copynumber: 4.5 Consensus size: 13
1459900 CCGTTACAAG
1459910 CAATGTATCGATA
1 CAATGTATCGATA
1459923 CAAT-T-TC-AT-
1 CAATGTATCGATA
1459932 C-ATGTATCGATA
1 CAATGTATCGATA
1459944 CAATGTATCGATA
1 CAATGTATCGATA
*
1459957 CATTGTA
1 CAATGTA
1459964 CCATGTATTG
Statistics
Matches: 35, Mismatches: 1, Indels: 10
0.76 0.02 0.22
Matches are distributed among these distances:
8 2 0.06
9 2 0.06
10 4 0.11
11 4 0.11
12 2 0.06
13 21 0.60
ACGTcount: A:0.35, C:0.17, G:0.13, T:0.35
Consensus pattern (13 bp):
CAATGTATCGATA
Found at i:1459951 original size:34 final size:33
Alignment explanation
Indices: 1459910--1459979 Score: 97
Period size: 33 Copynumber: 2.1 Consensus size: 33
1459900 CCGTTACAAG
*
1459910 CAATGTATCGATACAATT-TCATCATGTATCGATA
1 CAATGTATCGATAC-ATTGT-ACCATGTATCGATA
*
1459944 CAATGTATCGATACATTGTACCATGTATTGATA
1 CAATGTATCGATACATTGTACCATGTATCGATA
1459977 CAA
1 CAA
1459980 ACAGTGGTAG
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
33 18 0.55
34 15 0.45
ACGTcount: A:0.36, C:0.17, G:0.13, T:0.34
Consensus pattern (33 bp):
CAATGTATCGATACATTGTACCATGTATCGATA
Found at i:1460033 original size:20 final size:20
Alignment explanation
Indices: 1460008--1460062 Score: 67
Period size: 19 Copynumber: 2.8 Consensus size: 20
1459998 CTGCCAGTTT
* **
1460008 CATGTATCGTTACAATTGTC
1 CATGTATCGATACAATTGAA
*
1460028 CATGTATTGATACAA-TGAA
1 CATGTATCGATACAATTGAA
1460047 CATGTATCGATACAAT
1 CATGTATCGATACAAT
1460063 GTATCGATAC
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
19 16 0.55
20 13 0.45
ACGTcount: A:0.35, C:0.16, G:0.15, T:0.35
Consensus pattern (20 bp):
CATGTATCGATACAATTGAA
Found at i:1460066 original size:13 final size:13
Alignment explanation
Indices: 1460048--1460074 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
1460038 TACAATGAAC
1460048 ATGTATCGATACA
1 ATGTATCGATACA
1460061 ATGTATCGATACA
1 ATGTATCGATACA
1460074 A
1 A
1460075 AGCGTAATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1462227 original size:13 final size:13
Alignment explanation
Indices: 1462209--1462233 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1462199 CATAAAGTGT
1462209 TGTATCGATACAA
1 TGTATCGATACAA
1462222 TGTATCGATACA
1 TGTATCGATACA
1462234 TATTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1462231 original size:33 final size:33
Alignment explanation
Indices: 1462189--1462255 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
1462179 GTCAACGATT
1462189 TGTATCGATACATAAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAAGTGTTGTATCGATACAA
*** *
1462222 TGTATCGATACATATTTTTTTGTATCGATACAA
1 TGTATCGATACATAAAGTGTTGTATCGATACAA
1462255 T
1 T
1462256 TTAAGCTACT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.33, C:0.12, G:0.15, T:0.40
Consensus pattern (33 bp):
TGTATCGATACATAAAGTGTTGTATCGATACAA
Found at i:1462314 original size:13 final size:13
Alignment explanation
Indices: 1462296--1462320 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1462286 ATCACTTAAA
1462296 TGTATCGATACAT
1 TGTATCGATACAT
1462309 TGTATCGATACA
1 TGTATCGATACA
1462321 CTGATTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1462385 original size:52 final size:52
Alignment explanation
Indices: 1462309--1462457 Score: 221
Period size: 52 Copynumber: 2.9 Consensus size: 52
1462299 ATCGATACAT
** *
1462309 TGTATCGATACACTGATT-TTTGTATCGATACATGCAGGAAAATTTGCCCAGA
1 TGTATCGATACACT-ATTAAATGTATCGATACATGCAGGCAAATTTGCCCAGA
*
1462361 TGTATCGATACATTA-TAACATGTATCGATACATGCAGGCAAATTTGCCCAGA
1 TGTATCGATACACTATTAA-ATGTATCGATACATGCAGGCAAATTTGCCCAGA
*
1462413 TGTATCGATACACTATTTAATGTATCGATACATGCAGGCAAATTT
1 TGTATCGATACACTATTAAATGTATCGATACATGCAGGCAAATTT
1462458 TCATATTTCG
Statistics
Matches: 88, Mismatches: 6, Indels: 6
0.88 0.06 0.06
Matches are distributed among these distances:
50 1 0.01
51 1 0.01
52 84 0.95
53 2 0.02
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.32
Consensus pattern (52 bp):
TGTATCGATACACTATTAAATGTATCGATACATGCAGGCAAATTTGCCCAGA
Found at i:1469316 original size:1 final size:1
Alignment explanation
Indices: 1469312--1469379 Score: 64
Period size: 1 Copynumber: 68.0 Consensus size: 1
1469302 AAAGGTGATG
* * * * * * * *
1469312 AAAAAAAAAAAAAAACAAACAAACAAAAAAAAACAAAAAAACAAAAAAAAAACAAAACACAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1469377 AAA
1 AAA
1469380 TGCAAAGGCA
Statistics
Matches: 51, Mismatches: 16, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
1 51 1.00
ACGTcount: A:0.88, C:0.12, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:1469339 original size:19 final size:18
Alignment explanation
Indices: 1469312--1469379 Score: 95
Period size: 18 Copynumber: 3.8 Consensus size: 18
1469302 AAAGGTGATG
1469312 AAAAA-AAAAAAAAAACA
1 AAAAACAAAAAAAAAACA
1469329 AACAAAC-AAAAAAAAACAA
1 AA-AAACAAAAAAAAAAC-A
1469348 AAAAACAAAAAAAAAACA
1 AAAAACAAAAAAAAAACA
*
1469366 AAACACAAAAAAAA
1 AAAAACAAAAAAAA
1469380 TGCAAAGGCA
Statistics
Matches: 46, Mismatches: 1, Indels: 7
0.85 0.02 0.13
Matches are distributed among these distances:
17 2 0.04
18 31 0.67
19 13 0.28
ACGTcount: A:0.88, C:0.12, G:0.00, T:0.00
Consensus pattern (18 bp):
AAAAACAAAAAAAAAACA
Found at i:1469349 original size:26 final size:24
Alignment explanation
Indices: 1469313--1469378 Score: 75
Period size: 21 Copynumber: 2.8 Consensus size: 24
1469303 AAGGTGATGA
*
1469313 AAAAAAAAAAA-AAACAAAC--AA
1 AAAAAAAAAAACAAAAAAACAAAA
*
1469334 ACAAAAAAAAACAAAAAAACAAAA
1 AAAAAAAAAAACAAAAAAACAAAA
1469358 AAAAAACAAAACACAAAAAAA
1 AAAAAA-AAAA-ACAAAAAAA
1469379 ATGCAAAGGC
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
21 10 0.27
22 7 0.19
24 7 0.19
25 4 0.11
26 9 0.24
ACGTcount: A:0.88, C:0.12, G:0.00, T:0.00
Consensus pattern (24 bp):
AAAAAAAAAAACAAAAAAACAAAA
Found at i:1470658 original size:30 final size:30
Alignment explanation
Indices: 1470589--1470800 Score: 210
Period size: 31 Copynumber: 6.9 Consensus size: 30
1470579 CTACAAATAC
* *
1470589 CTTCTCAAAGTCCACGACTTAGTGGCAATCT
1 CTTCTCAAAGCCCACGACTCAGTGGC-ATCT
*
1470620 CTTCTCAAAGCCCACGATTCAGTGGCAT-T
1 CTTCTCAAAGCCCACGACTCAGTGGCATCT
* *
1470649 TTGTCTCAAAGCCCACAACTCAGTGGCAATCT
1 CT-TCTCAAAGCCCACGACTCAGTGGC-ATCT
*
1470681 CTTCTCAAAGCCCACAACTCAGTGGCATCT
1 CTTCTCAAAGCCCACGACTCAGTGGCATCT
* * *
1470711 CTTTTCTAAGTCCACGACTCAGTGGCATCT
1 CTTCTCAAAGCCCACGACTCAGTGGCATCT
* * * * *
1470741 TTTTTCCCAAGTCCACGACTTAGTGGCATCCT
1 CTTCT-CAAAGCCCACGACTCAGTGGCAT-CT
* * *
1470773 TTTCTTCAAAGCCCACAACTCCGTGGCA
1 CTTC-TCAAAGCCCACGACTCAGTGGCA
1470801 CCTTTTTCTT
Statistics
Matches: 155, Mismatches: 20, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
29 2 0.01
30 58 0.37
31 70 0.45
32 24 0.15
33 1 0.01
ACGTcount: A:0.24, C:0.32, G:0.16, T:0.28
Consensus pattern (30 bp):
CTTCTCAAAGCCCACGACTCAGTGGCATCT
Found at i:1470676 original size:61 final size:61
Alignment explanation
Indices: 1470590--1470800 Score: 223
Period size: 61 Copynumber: 3.4 Consensus size: 61
1470580 TACAAATACC
* * *
1470590 TTCTCAAAGTCCACGACTTAGTGGCAATCTCTTCTCAAAGCCCACGATTCAGTGGCAT-TT
1 TTCTCAAAGCCCACAACTCAGTGGCAATCTCTTCTCAAAGCCCACGATTCAGTGGCATCTT
* *
1470650 TGTCTCAAAGCCCACAACTCAGTGGCAATCTCTTCTCAAAGCCCACAACTCAGTGGCATCTCT
1 T-TCTCAAAGCCCACAACTCAGTGGCAATCTCTTCTCAAAGCCCACGATTCAGTGGCATCT-T
* * * * * * *
1470713 TT-TCTAAGTCCACGACTCAGTGGC-ATCTTTTTTCCCAAGTCCACGACTT-AGTGGCATCCTT
1 TTCTCAAAGCCCACAACTCAGTGGCAATCTCTTCT-CAAAGCCCACGA-TTCAGTGGCAT-CTT
*
1470774 TTCTTCAAAGCCCACAACTCCGTGGCA
1 TTC-TCAAAGCCCACAACTCAGTGGCA
1470801 CCTTTTTCTT
Statistics
Matches: 124, Mismatches: 18, Indels: 14
0.79 0.12 0.09
Matches are distributed among these distances:
60 8 0.06
61 91 0.73
62 5 0.04
63 20 0.16
ACGTcount: A:0.24, C:0.32, G:0.16, T:0.28
Consensus pattern (61 bp):
TTCTCAAAGCCCACAACTCAGTGGCAATCTCTTCTCAAAGCCCACGATTCAGTGGCATCTT
Found at i:1470821 original size:37 final size:37
Alignment explanation
Indices: 1470771--1470974 Score: 372
Period size: 37 Copynumber: 5.5 Consensus size: 37
1470761 TAGTGGCATC
1470771 CTTTTCTTCAAAGCCCACAACTCCGTGGCACCTTTTT
1 CTTTTCTTCAAAGCCCACAACTCCGTGGCACCTTTTT
* *
1470808 CTTTTCTTCAAAGCCCACAACTCTGTGGTACCTTTTT
1 CTTTTCTTCAAAGCCCACAACTCCGTGGCACCTTTTT
*
1470845 CTTTTCTTCAAAGCCCACAACTCCGTGGCACATTTTT
1 CTTTTCTTCAAAGCCCACAACTCCGTGGCACCTTTTT
1470882 CTTTTCTTCAAAGCCCACAACTCCGTGGCACCTTTTT
1 CTTTTCTTCAAAGCCCACAACTCCGTGGCACCTTTTT
*
1470919 CTTTTCTTCAAAGCCCACAACTCTGTGGCACCTTTTT
1 CTTTTCTTCAAAGCCCACAACTCCGTGGCACCTTTTT
1470956 CTTTTCTTCAAAGCCCACA
1 CTTTTCTTCAAAGCCCACA
1470975 CCAGTCGGTG
Statistics
Matches: 160, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 160 1.00
ACGTcount: A:0.20, C:0.33, G:0.10, T:0.36
Consensus pattern (37 bp):
CTTTTCTTCAAAGCCCACAACTCCGTGGCACCTTTTT
Found at i:1471086 original size:21 final size:21
Alignment explanation
Indices: 1471062--1471129 Score: 59
Period size: 21 Copynumber: 3.2 Consensus size: 21
1471052 ATATAGCTGG
1471062 CCTTGAATCAGCATATTGGCA
1 CCTTGAATCAGCATATTGGCA
* * **
1471083 CCTTTAAGCCCCATATAGCTGG--
1 CCTTGAATCAGCATAT---TGGCA
1471105 CCTTGAATCAGCATATTGGCA
1 CCTTGAATCAGCATATTGGCA
1471126 CCTT
1 CCTT
1471130 CTTCTTTAAG
Statistics
Matches: 34, Mismatches: 8, Indels: 10
0.65 0.15 0.19
Matches are distributed among these distances:
19 3 0.09
21 16 0.47
22 12 0.35
24 3 0.09
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.29
Consensus pattern (21 bp):
CCTTGAATCAGCATATTGGCA
Found at i:1471103 original size:43 final size:43
Alignment explanation
Indices: 1470993--1471832 Score: 843
Period size: 43 Copynumber: 18.1 Consensus size: 43
1470983 TGGCAACCCT
1470993 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTC
1 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-C--C
1471039 TTTTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACC
1 ---TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACC
* *
1471085 TTTAAGCCCCATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTC
1 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA----C--C
* *
1471134 TTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACC
1 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACC
* *
1471177 TTTAAGCCCCATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTC
1 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA----C--C
* *
1471226 TTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACC
1 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACC
*
1471269 TTTAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTC
1 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA----C--C
* *
1471318 TTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACC
1 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACC
*
1471361 TTTAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTC
1 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA----C--C
* * *
1471410 TTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACT
1 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACC
* *
1471453 TTTAAGCCCAATATAGCTGGCCTTGAACCAGCATATTGGCATTTTCTCCACC
1 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGG---------CACC
*
1471505 TTTAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACTTTCTTC
1 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA----C--C
* * *
1471554 TTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACT
1 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACC
*
1471597 TTTAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACTTTCTCCATC
1 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-------C--C
* * *
1471649 TTTAAGTCCAATGTAGTTGGCCTTGAATCAGCACATTGGCACC
1 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACC
1471692 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCTTTTCCATC
1 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-------C--C
** * * *
1471744 TTTAAGTCCAACGTAACTGGCCTTGACTCAGCACATTGGCACC
1 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACC
1471787 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACC
1 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACC
1471830 TTT
1 TTT
1471833 TCCATCTTTA
Statistics
Matches: 676, Mismatches: 58, Indels: 120
0.79 0.07 0.14
Matches are distributed among these distances:
43 311 0.46
45 7 0.01
46 1 0.00
47 5 0.01
48 1 0.00
49 234 0.35
50 2 0.00
52 115 0.17
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.32
Consensus pattern (43 bp):
TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACC
Found at i:1471107 original size:92 final size:92
Alignment explanation
Indices: 1470993--1471832 Score: 1023
Period size: 92 Copynumber: 9.0 Consensus size: 92
1470983 TGGCAACCCT
* *
1470993 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTTTTTAAGTCCAATATAG
1 TTTAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATATAG
1471058 CTGGCCTTGAATCAGCATATTGGCACC
66 CTGGCCTTGAATCAGCATATTGGCACC
* *
1471085 TTTAAGCCCCATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGTAG
1 TTTAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATATAG
*
1471150 CTGGCCTTGAATCAGCACATTGGCACC
66 CTGGCCTTGAATCAGCATATTGGCACC
* *
1471177 TTTAAGCCCCATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGTAG
1 TTTAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATATAG
*
1471242 CTGGCCTTGAATCAGCACATTGGCACC
66 CTGGCCTTGAATCAGCATATTGGCACC
*
1471269 TTTAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGTAG
1 TTTAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATATAG
*
1471334 CTGGCCTTGAATCAGCACATTGGCACC
66 CTGGCCTTGAATCAGCATATTGGCACC
*
1471361 TTTAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGTAG
1 TTTAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATATAG
* *
1471426 CTGGCCTTGAATCAGCACATTGGCACT
66 CTGGCCTTGAATCAGCATATTGGCACC
* ** * *
1471453 TTTAAGCCCAATATAGCTGGCCTTGAACCAGCATATTGGCATTTTCTCCACCTTTAAGCCCAATA
1 TTTAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCT---TCTTTAAGTCCAATA
1471518 TAGCTGGCCTTGAATCAGCATATTGGCACTTTCTTC
63 TAGCTGGCCTTGAATCAGCATATTGGCA----C--C
* * * *
1471554 TTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C-T-TTTAAGCCCAATATAG
1 TTTAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATATAG
1471613 CTGGCCTTGAATCAGCATATTGGCACTTTCTCCATC
66 CTGGCCTTGAATCAGCATATTGGCA-------C--C
* * * *
1471649 TTTAAGTCCAATGTAGTTGGCCTTGAATCAGCACATTGGCA----C--CTTTAAGTCCAATATAG
1 TTTAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATATAG
1471708 CTGGCCTTGAATCAGCATATTGGCATCTTTTCCATC
66 CTGGCCTTGAATCAGCATATTGGCA-------C--C
* ** * * *
1471744 TTTAAGTCCAACGTAACTGGCCTTGACTCAGCACATTGGCA----C--CTTTAAGTCCAATATAG
1 TTTAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATATAG
1471803 CTGGCCTTGAATCAGCATATTGGCACC
66 CTGGCCTTGAATCAGCATATTGGCACC
1471830 TTT
1 TTT
1471833 TCCATCTTTA
Statistics
Matches: 702, Mismatches: 33, Indels: 32
0.92 0.04 0.04
Matches are distributed among these distances:
86 4 0.01
88 1 0.00
92 446 0.64
95 212 0.30
97 1 0.00
99 1 0.00
101 37 0.05
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.32
Consensus pattern (92 bp):
TTTAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATATAG
CTGGCCTTGAATCAGCATATTGGCACC
Found at i:1471119 original size:22 final size:22
Alignment explanation
Indices: 1471052--1471120 Score: 63
Period size: 22 Copynumber: 3.2 Consensus size: 22
1471042 TTTAAGTCCA
1471052 ATATAGCTGGCCTTGAATCAGC
1 ATATAGCTGGCCTTGAATCAGC
* * **
1471074 ATAT---TGGCACCTTTAAGCCCC
1 ATATAGCTGG--CCTTGAATCAGC
1471095 ATATAGCTGGCCTTGAATCAGC
1 ATATAGCTGGCCTTGAATCAGC
1471117 ATAT
1 ATAT
1471121 TGGCACCTTC
Statistics
Matches: 34, Mismatches: 8, Indels: 10
0.65 0.15 0.19
Matches are distributed among these distances:
19 3 0.09
21 12 0.35
22 16 0.47
24 3 0.09
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.29
Consensus pattern (22 bp):
ATATAGCTGGCCTTGAATCAGC
Found at i:1471531 original size:52 final size:51
Alignment explanation
Indices: 1471453--1471936 Score: 435
Period size: 52 Copynumber: 9.8 Consensus size: 51
1471443 CATTGGCACT
* * *
1471453 TTTAAGCCCAATATAGCTGGCCTTGAACCAGCATATTGGCATTTTCTCCACC
1 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATTTT-TCCATC
* * *
1471505 TTTAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-CTTT-CTTC
1 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATTTTTCCATC
* *
1471554 TTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA------C-T-
1 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATTTTTCCATC
* *
1471597 TTTAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACTTTCTCCATC
1 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-TTTTTCCATC
* * *
1471649 TTTAAGTCCAATGTAGTTGGCCTTGAATCAGCACATTGGCA------C--C
1 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATTTTTCCATC
1471692 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCTTTTCCATC
1 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCAT-TTTTCCATC
** * * *
1471744 TTTAAGTCCAACGTAACTGGCCTTGACTCAGCACATTGGCA------C--C
1 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATTTTTCCATC
*
1471787 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATC
1 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-TTTTTCCATC
* * * * * *
1471839 TTTAAGTTCAATGTAGTTGGCCTTGAATCAGTACATTGACATCCTTTTTCTCATC
1 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA---TTTTTC-CATC
* * * * *
1471894 TTTGAAGCCCAATATCGTTGGCCGTGAATCAACATATTGGCAT
1 TTT-AAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCAT
1471937 CTTTATCATT
Statistics
Matches: 358, Mismatches: 43, Indels: 61
0.77 0.09 0.13
Matches are distributed among these distances:
43 114 0.32
44 1 0.00
45 3 0.01
49 40 0.11
50 4 0.01
51 3 0.01
52 150 0.42
53 1 0.00
54 6 0.02
55 7 0.02
56 29 0.08
ACGTcount: A:0.25, C:0.25, G:0.17, T:0.33
Consensus pattern (51 bp):
TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATTTTTCCATC
Found at i:1471696 original size:95 final size:95
Alignment explanation
Indices: 1471501--1471885 Score: 607
Period size: 95 Copynumber: 4.1 Consensus size: 95
1471491 GCATTTTCTC
*
1471501 CACCTTTAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-C-TTT-CTTCTTTAAGTCC
1 CACCTTTAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTCC
1471563 AATGTAGCTGGCCTTGAATCAGCACATTGG
66 AATGTAGCTGGCCTTGAATCAGCACATTGG
*
1471593 CACTTTTAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-CTTTCTCCATCTTTAAGTC
1 CACCTTTAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTT-TCCATCTTTAAGTC
*
1471657 CAATGTAGTTGGCCTTGAATCAGCACATTGG
65 CAATGTAGCTGGCCTTGAATCAGCACATTGG
* *
1471688 CACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCTTTTCCATCTTTAAGTCC
1 CACCTTTAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTCC
* * *
1471753 AACGTAACTGGCCTTGACTCAGCACATTGG
66 AATGTAGCTGGCCTTGAATCAGCACATTGG
* *
1471783 CACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTTC
1 CACCTTTAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTCC
* * *
1471848 AATGTAGTTGGCCTTGAATCAGTACATTGA
66 AATGTAGCTGGCCTTGAATCAGCACATTGG
1471878 CATCCTTT
1 CA-CCTTT
1471886 TTCTCATCTT
Statistics
Matches: 271, Mismatches: 17, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
92 45 0.17
93 2 0.01
94 1 0.00
95 214 0.79
96 9 0.03
ACGTcount: A:0.25, C:0.25, G:0.17, T:0.33
Consensus pattern (95 bp):
CACCTTTAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTCC
AATGTAGCTGGCCTTGAATCAGCACATTGG
Found at i:1472623 original size:13 final size:13
Alignment explanation
Indices: 1472605--1472642 Score: 76
Period size: 13 Copynumber: 2.9 Consensus size: 13
1472595 CATAAAGTGT
1472605 TGTATCGATACAA
1 TGTATCGATACAA
1472618 TGTATCGATACAA
1 TGTATCGATACAA
1472631 TGTATCGATACA
1 TGTATCGATACA
1472643 TATTTTTTTG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.37, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1472723 original size:13 final size:13
Alignment explanation
Indices: 1472705--1472729 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1472695 ATCACTTAAA
1472705 TGTATCGATACAT
1 TGTATCGATACAT
1472718 TGTATCGATACA
1 TGTATCGATACA
1472730 CTGATTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1472794 original size:52 final size:52
Alignment explanation
Indices: 1472718--1472866 Score: 212
Period size: 52 Copynumber: 2.9 Consensus size: 52
1472708 ATCGATACAT
** *
1472718 TGTATCGATACACTGATT-TTTGTATCGATACATGCAGGAAAATTTGCCCAGA
1 TGTATCGATACACT-ATTAAATGTATCGATACATGCAGGCAAATTTGCCCAGA
* *
1472770 TGTATCGATACATTA-TAACATGTATCGATACATGTAGGCAAATTTGCCCAGA
1 TGTATCGATACACTATTAA-ATGTATCGATACATGCAGGCAAATTTGCCCAGA
*
1472822 TGTATCGATACACTATTTAATGTATCGATACATGCAGGCAAATTT
1 TGTATCGATACACTATTAAATGTATCGATACATGCAGGCAAATTT
1472867 TCATATTTCG
Statistics
Matches: 86, Mismatches: 8, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
50 1 0.01
51 1 0.01
52 82 0.95
53 2 0.02
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Consensus pattern (52 bp):
TGTATCGATACACTATTAAATGTATCGATACATGCAGGCAAATTTGCCCAGA
Found at i:1479246 original size:20 final size:21
Alignment explanation
Indices: 1479221--1479273 Score: 65
Period size: 20 Copynumber: 2.6 Consensus size: 21
1479211 ATTGATACAT
*
1479221 TGTATCGATACATG-ACCA-AA
1 TGTATCGATACATGTA-AAGAA
*
1479241 TGTATCGATACTTGTAAAGAA
1 TGTATCGATACATGTAAAGAA
1479262 TGTATCGATACA
1 TGTATCGATACA
1479274 AGTCATTGGC
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
20 14 0.50
21 14 0.50
ACGTcount: A:0.38, C:0.15, G:0.17, T:0.30
Consensus pattern (21 bp):
TGTATCGATACATGTAAAGAA
Found at i:1481767 original size:27 final size:27
Alignment explanation
Indices: 1481729--1481798 Score: 140
Period size: 27 Copynumber: 2.6 Consensus size: 27
1481719 GTTGAAAACG
1481729 GGGTTGGAGTGTCCCCTCGGAGGAATA
1 GGGTTGGAGTGTCCCCTCGGAGGAATA
1481756 GGGTTGGAGTGTCCCCTCGGAGGAATA
1 GGGTTGGAGTGTCCCCTCGGAGGAATA
1481783 GGGTTGGAGTGTCCCC
1 GGGTTGGAGTGTCCCC
1481799 GGTGAATAAA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 43 1.00
ACGTcount: A:0.16, C:0.20, G:0.41, T:0.23
Consensus pattern (27 bp):
GGGTTGGAGTGTCCCCTCGGAGGAATA
Found at i:1484012 original size:19 final size:19
Alignment explanation
Indices: 1483988--1484085 Score: 112
Period size: 19 Copynumber: 5.8 Consensus size: 19
1483978 AGTAGCTTCA
1483988 TATGTATCGATACAACACT
1 TATGTATCGATACAACACT
1484007 TATGTATCGAT---ACA-T
1 TATGTATCGATACAACACT
1484022 T-T-TATCGATACAACACT
1 TATGTATCGATACAACACT
1484039 TATGTATCGAT---ACA--
1 TATGTATCGATACAACACT
1484053 T-TGTATCGATACAACACT
1 TATGTATCGATACAACACT
1484071 TATGTATCGATACAA
1 TATGTATCGATACAA
1484086 ATCATTGACA
Statistics
Matches: 67, Mismatches: 0, Indels: 24
0.74 0.00 0.26
Matches are distributed among these distances:
13 16 0.24
14 2 0.03
15 2 0.03
16 12 0.18
17 2 0.03
18 2 0.03
19 31 0.46
ACGTcount: A:0.36, C:0.18, G:0.11, T:0.35
Consensus pattern (19 bp):
TATGTATCGATACAACACT
Found at i:1484033 original size:32 final size:32
Alignment explanation
Indices: 1483990--1484084 Score: 181
Period size: 32 Copynumber: 3.0 Consensus size: 32
1483980 TAGCTTCATA
1483990 TGTATCGATACAACACTTATGTATCGATACAT
1 TGTATCGATACAACACTTATGTATCGATACAT
*
1484022 TTTATCGATACAACACTTATGTATCGATACAT
1 TGTATCGATACAACACTTATGTATCGATACAT
1484054 TGTATCGATACAACACTTATGTATCGATACA
1 TGTATCGATACAACACTTATGTATCGATACA
1484085 AATCATTGAC
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 61 1.00
ACGTcount: A:0.35, C:0.19, G:0.12, T:0.35
Consensus pattern (32 bp):
TGTATCGATACAACACTTATGTATCGATACAT
Found at i:1485051 original size:21 final size:21
Alignment explanation
Indices: 1484989--1485054 Score: 62
Period size: 21 Copynumber: 3.1 Consensus size: 21
1484979 TAAAGATGCC
1484989 GGTGTCAATATGCTGATTCAA
1 GGTGTCAATATGCTGATTCAA
*** * *
1485010 GGCCAACGATAT-CGGACTTCAA
1 GG-TGTCAATATGCTGA-TTCAA
1485032 GGTGTCAATATGCTGATTCAA
1 GGTGTCAATATGCTGATTCAA
1485053 GG
1 GG
1485055 CCAGCGATAT
Statistics
Matches: 32, Mismatches: 10, Indels: 6
0.67 0.21 0.12
Matches are distributed among these distances:
21 17 0.53
22 15 0.47
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.27
Consensus pattern (21 bp):
GGTGTCAATATGCTGATTCAA
Found at i:1485202 original size:28 final size:28
Alignment explanation
Indices: 1485170--1485267 Score: 133
Period size: 28 Copynumber: 3.4 Consensus size: 28
1485160 GGTTGCATCC
*
1485170 ACTTGTGTGCTTTTGAAGGTTGCCACTG
1 ACTTGTGGGCTTTTGAAGGTTGCCACTG
*
1485198 ACTTGTGGGCTTTTGAAGGTTGCCATTG
1 ACTTGTGGGCTTTTGAAGGTTGCCACTG
* * *
1485226 ACTTATGGGCTTTTGAAAAGGGTGCCACTA
1 ACTTGTGGGCTTTTG--AAGGTTGCCACTG
1485256 ACTTGTGGGCTT
1 ACTTGTGGGCTT
1485268 AAAAGGAAAA
Statistics
Matches: 61, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
28 40 0.66
30 21 0.34
ACGTcount: A:0.17, C:0.16, G:0.30, T:0.37
Consensus pattern (28 bp):
ACTTGTGGGCTTTTGAAGGTTGCCACTG
Found at i:1485261 original size:58 final size:57
Alignment explanation
Indices: 1485132--1485267 Score: 150
Period size: 58 Copynumber: 2.3 Consensus size: 57
1485122 AGAAAAAGAC
* * * *
1485132 GCCACCAACTTGTGTGGACTTTTGAAAGGGTTGCATCCACTTGTGTGCTTTTGAAGGTT
1 GCCACTAACTTGTG-GG-CTTTTGAAAGGGTTGCATCCACTTATGGGCTTTTGAAGGGT
* **
1485191 GCCACTGACTTGTGGGCTTTTG-AA-GGTTGCCATTGACTTATGGGCTTTTGAAAAGGGT
1 GCCACTAACTTGTGGGCTTTTGAAAGGGTTG-CATCCACTTATGGGCTTTTG--AAGGGT
1485249 GCCACTAACTTGTGGGCTT
1 GCCACTAACTTGTGGGCTT
1485268 AAAAGGAAAA
Statistics
Matches: 66, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
55 5 0.08
56 18 0.27
57 6 0.09
58 25 0.38
59 12 0.18
ACGTcount: A:0.18, C:0.18, G:0.29, T:0.35
Consensus pattern (57 bp):
GCCACTAACTTGTGGGCTTTTGAAAGGGTTGCATCCACTTATGGGCTTTTGAAGGGT
Found at i:1485298 original size:34 final size:35
Alignment explanation
Indices: 1485260--1485332 Score: 96
Period size: 35 Copynumber: 2.1 Consensus size: 35
1485250 CCACTAACTT
* *
1485260 GTGGGCTTA-AAAGGAAAAA-GAGTGCTACGGAGTA
1 GTGGGCTTACAAA-AAAAAAGGAGTGCCACGGAGTA
*
1485294 GTGGGCTTACAAAAAAAAAGGAGTGCCACGGAGTT
1 GTGGGCTTACAAAAAAAAAGGAGTGCCACGGAGTA
1485329 GTGG
1 GTGG
1485333 ACTTTGGAAA
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
34 14 0.41
35 20 0.59
ACGTcount: A:0.36, C:0.11, G:0.36, T:0.18
Consensus pattern (35 bp):
GTGGGCTTACAAAAAAAAAGGAGTGCCACGGAGTA
Found at i:1485359 original size:29 final size:29
Alignment explanation
Indices: 1485317--1485480 Score: 163
Period size: 29 Copynumber: 5.7 Consensus size: 29
1485307 AAAAAAGGAG
* * *
1485317 TGCCACGGAGTTGTGGACTTTGGAAAAGA
1 TGCCACTGACTTGTGGGCTTTGGAAAAGA
* * *
1485346 TGCCATTAACTTGTGGGCTTTGGAAAAGGG
1 TGCCACTGACTTGTGGGCTTTGGAAAA-GA
** * *
1485376 TG-CACTGGTTTGTGGGCTTT-G-AAGGT
1 TGCCACTGACTTGTGGGCTTTGGAAAAGA
* * *
1485402 TGCCACTGACTTGTGGACTTTGAAAAATA
1 TGCCACTGACTTGTGGGCTTTGGAAAAGA
*
1485431 TGCCACTGACTTGTGGGCTTTGAAAAAGA
1 TGCCACTGACTTGTGGGCTTTGGAAAAGA
*
1485460 TGCCACTGATTTGTGGGCTTT
1 TGCCACTGACTTGTGGGCTTT
1485481 TGAAGGGTGA
Statistics
Matches: 109, Mismatches: 22, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
26 3 0.03
27 17 0.16
28 1 0.01
29 85 0.78
30 3 0.03
ACGTcount: A:0.23, C:0.15, G:0.30, T:0.32
Consensus pattern (29 bp):
TGCCACTGACTTGTGGGCTTTGGAAAAGA
Found at i:1485415 original size:56 final size:57
Alignment explanation
Indices: 1485308--1485480 Score: 161
Period size: 56 Copynumber: 3.0 Consensus size: 57
1485298 GCTTACAAAA
* * * * *
1485308 AAAAAGGAGTGCCACGGAGTTGTGGACTTTGGAAAAGATGCCATTAACTTGTGGGCTTTGG
1 AAAAA-GA-TGCCACTGACTTGTGGGCTTT-GAAAAGATGCCACTGACTTGTGGGCTTT-G
* * ** * * *
1485369 AAAAGGGTG-CACTGGTTTGTGGGCTTTG-AAGGTTGCCACTGACTTGTGGACTTTG
1 AAAAAGATGCCACTGACTTGTGGGCTTTGAAAAGATGCCACTGACTTGTGGGCTTTG
* *
1485424 AAAAATATGCCACTGACTTGTGGGCTTTGAAAAAGATGCCACTGATTTGTGGGCTTT
1 AAAAAGATGCCACTGACTTGTGGGCTTTG-AAAAGATGCCACTGACTTGTGGGCTTT
1485481 TGAAGGGTGA
Statistics
Matches: 89, Mismatches: 20, Indels: 9
0.75 0.17 0.08
Matches are distributed among these distances:
55 7 0.08
56 38 0.43
57 1 0.01
58 36 0.40
59 2 0.02
60 1 0.01
61 4 0.04
ACGTcount: A:0.25, C:0.14, G:0.31, T:0.30
Consensus pattern (57 bp):
AAAAAGATGCCACTGACTTGTGGGCTTTGAAAAGATGCCACTGACTTGTGGGCTTTG
Found at i:1485467 original size:85 final size:86
Alignment explanation
Indices: 1485317--1485486 Score: 236
Period size: 85 Copynumber: 2.0 Consensus size: 86
1485307 AAAAAAGGAG
* * * * *
1485317 TGCCACGGAGTTGTGGACTTTGGAAAAGATGCCATTAACTTGTGGGCTTTGGAAAAGGGTGCACT
1 TGCCACGGACTTGTGGACTTTGAAAAAGATGCCACTAACTTGTGGGCTTTGGAAAAAGATGCACT
*
1485382 GGTTTGTGGGC-TTTGAAGGT
66 GATTTGTGGGCTTTTGAAGGT
* * *
1485402 TGCCACTGACTTGTGGACTTTGAAAAATATGCCACTGACTTGTGGGCTTT-GAAAAAGATGCCAC
1 TGCCACGGACTTGTGGACTTTGAAAAAGATGCCACTAACTTGTGGGCTTTGGAAAAAGATG-CAC
1485466 TGATTTGTGGGCTTTTGAAGG
65 TGATTTGTGGGCTTTTGAAGG
1485487 GTGAGGAATG
Statistics
Matches: 74, Mismatches: 9, Indels: 3
0.86 0.10 0.03
Matches are distributed among these distances:
84 8 0.11
85 58 0.78
86 8 0.11
ACGTcount: A:0.23, C:0.15, G:0.31, T:0.31
Consensus pattern (86 bp):
TGCCACGGACTTGTGGACTTTGAAAAAGATGCCACTAACTTGTGGGCTTTGGAAAAAGATGCACT
GATTTGTGGGCTTTTGAAGGT
Found at i:1486943 original size:1 final size:1
Alignment explanation
Indices: 1486939--1487050 Score: 71
Period size: 1 Copynumber: 112.0 Consensus size: 1
1486929 TTTGTTGTTG
* * * ** * * * * *
1486939 TTTTTTTTTCTGTTTTGTTTTTGATTTTGTTTTTGTTTTTTTTCTTTTTTCTTTTTTTTTTTTGT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* * * * * * *
1487004 TTATTTTTTGTTGTTTTTGTTTTTTTTGTTGTTTTTGTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1487051 GCGGAGGACG
Statistics
Matches: 78, Mismatches: 33, Indels: 0
0.70 0.30 0.00
Matches are distributed among these distances:
1 78 1.00
ACGTcount: A:0.02, C:0.03, G:0.11, T:0.85
Consensus pattern (1 bp):
T
Found at i:1486952 original size:18 final size:17
Alignment explanation
Indices: 1486926--1487051 Score: 134
Period size: 17 Copynumber: 7.4 Consensus size: 17
1486916 ATCCCGACCC
*
1486926 TTTTTTGTTGTTGTTTT
1 TTTTTTGTTTTTGTTTT
1486943 TTTTTCTG-TTTTGTTTT
1 TTTTT-TGTTTTTGTTTT
*
1486960 TGATTTTGTTTTTGTTTT
1 T-TTTTTGTTTTTGTTTT
* *
1486978 TTTTCT-TTTTTCTTTT
1 TTTTTTGTTTTTGTTTT
*
1486994 TTTTTT-TTGTTT-ATTT
1 TTTTTTGTT-TTTGTTTT
*
1487010 TTTGTTGTTTTTGTTTT
1 TTTTTTGTTTTTGTTTT
1487027 TTTTGTTGTTTTTGTTTT
1 TTTT-TTGTTTTTGTTTT
1487045 TTTTTTG
1 TTTTTTG
1487052 CGGAGGACGT
Statistics
Matches: 92, Mismatches: 10, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
16 27 0.29
17 33 0.36
18 32 0.35
ACGTcount: A:0.02, C:0.02, G:0.13, T:0.83
Consensus pattern (17 bp):
TTTTTTGTTTTTGTTTT
Found at i:1486966 original size:6 final size:6
Alignment explanation
Indices: 1486927--1487051 Score: 111
Period size: 6 Copynumber: 21.0 Consensus size: 6
1486917 TCCCGACCCT
* *
1486927 TTTTTG TTGTTG TTTTT- TTTTCTG -TTTTG TTTTTG ATTTTG TTTTTG
1 TTTTTG TTTTTG TTTTTG TTTT-TG TTTTTG TTTTTG TTTTTG TTTTTG
* *
1486974 TTTTT- TTTCTT- TTTTCT- TTTTTT TTTTTG TTTATTT TTTGTTG TTTTTG
1 TTTTTG TTT-TTG TTTT-TG TTTTTG TTTTTG TTT-TTG TTT-TTG TTTTTG
1487023 TTTTT- TTTGTTG TTTTTG TTTTT- TTTTTG
1 TTTTTG TTT-TTG TTTTTG TTTTTG TTTTTG
1487052 CGGAGGACGT
Statistics
Matches: 101, Mismatches: 8, Indels: 20
0.78 0.06 0.16
Matches are distributed among these distances:
5 19 0.19
6 69 0.68
7 13 0.13
ACGTcount: A:0.02, C:0.02, G:0.13, T:0.83
Consensus pattern (6 bp):
TTTTTG
Found at i:1501318 original size:28 final size:28
Alignment explanation
Indices: 1501286--1501383 Score: 151
Period size: 28 Copynumber: 3.4 Consensus size: 28
1501276 GGTTGCATCA
*
1501286 ACTTGTGTGCTTTTGAAGGTTGCCACTG
1 ACTTGTGGGCTTTTGAAGGTTGCCACTG
1501314 ACTTGTGGGCTTTTGAAGGTTGCCACTG
1 ACTTGTGGGCTTTTGAAGGTTGCCACTG
* *
1501342 ACTTGTGGGCTTTTGAAAAGGGTGCCACTA
1 ACTTGTGGGCTTTTG--AAGGTTGCCACTG
1501372 ACTTGTGGGCTT
1 ACTTGTGGGCTT
1501384 AAAAGGAAAA
Statistics
Matches: 65, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
28 42 0.65
30 23 0.35
ACGTcount: A:0.16, C:0.17, G:0.31, T:0.36
Consensus pattern (28 bp):
ACTTGTGGGCTTTTGAAGGTTGCCACTG
Found at i:1501412 original size:34 final size:35
Alignment explanation
Indices: 1501374--1501448 Score: 116
Period size: 35 Copynumber: 2.2 Consensus size: 35
1501364 TGCCACTAAC
* *
1501374 TTGTGGGCTTA-AAAGGAAAAAGAGTGCTACGGAG
1 TTGTGGGCTTACAAAAGAAAAAGAGTGCCACGGAG
*
1501408 TTGTGGGCTTACAAAAGAAAAGGAGTGCCACGGAG
1 TTGTGGGCTTACAAAAGAAAAAGAGTGCCACGGAG
1501443 TTGTGG
1 TTGTGG
1501449 ACTTTGGAAA
Statistics
Matches: 37, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
34 11 0.30
35 26 0.70
ACGTcount: A:0.32, C:0.11, G:0.36, T:0.21
Consensus pattern (35 bp):
TTGTGGGCTTACAAAAGAAAAAGAGTGCCACGGAG
Found at i:1501475 original size:29 final size:29
Alignment explanation
Indices: 1501424--1501596 Score: 136
Period size: 29 Copynumber: 6.0 Consensus size: 29
1501414 GCTTACAAAA
* * *
1501424 GAAAAGGAGTGCCACGGAGTTGTGGACTTTG
1 GAAAA-GA-TGCCACTGACTTGTGGGCTTTG
* * **
1501455 GAAAAGATGCCATTAACTTGTGGGCTTCA
1 GAAAAGATGCCACTGACTTGTGGGCTTTG
* * **
1501484 GAAAAGGGTG-CAGTGGTTTGTGGGCTTT-
1 GAAAA-GATGCCACTGACTTGTGGGCTTTG
* * *
1501512 G-AAGGTTGCCACTGACTTGTGGACTTTG
1 GAAAAGATGCCACTGACTTGTGGGCTTTG
* *
1501540 AAAAAGATGTCACTGACTTGTGGGCTTTG
1 GAAAAGATGCCACTGACTTGTGGGCTTTG
* *
1501569 AAAAAGATGCCACTGATTTGTGGGCTTT
1 GAAAAGATGCCACTGACTTGTGGGCTTT
1501597 TGAAGGGTGA
Statistics
Matches: 112, Mismatches: 26, Indels: 10
0.76 0.18 0.07
Matches are distributed among these distances:
26 3 0.03
27 16 0.14
28 1 0.01
29 82 0.73
30 5 0.04
31 5 0.04
ACGTcount: A:0.25, C:0.14, G:0.32, T:0.29
Consensus pattern (29 bp):
GAAAAGATGCCACTGACTTGTGGGCTTTG
Found at i:1501531 original size:56 final size:57
Alignment explanation
Indices: 1501443--1501595 Score: 148
Period size: 56 Copynumber: 2.7 Consensus size: 57
1501433 TGCCACGGAG
* * * * * * **
1501443 TTGTGGACTTTGGAAAAGATGCCATTAACTTGTGGGCTTCAGAAAAGGGTG-CAGTGGT
1 TTGTGGGCTTT-GAAAAGATGCCACTGACTTGTGGGCTT-AGAAAAAGATGTCACTGAC
* * * *
1501501 TTGTGGGCTTTG-AAGGTTGCCACTGACTTGTGGACTTTGAAAAAGATGTCACTGAC
1 TTGTGGGCTTTGAAAAGATGCCACTGACTTGTGGGCTTAGAAAAAGATGTCACTGAC
*
1501557 TTGTGGGCTTTGAAAAAGATGCCACTGATTTGTGGGCTT
1 TTGTGGGCTTTG-AAAAGATGCCACTGACTTGTGGGCTT
1501596 TTGAAGGGTG
Statistics
Matches: 76, Mismatches: 16, Indels: 6
0.78 0.16 0.06
Matches are distributed among these distances:
55 8 0.11
56 36 0.47
57 1 0.01
58 31 0.41
ACGTcount: A:0.24, C:0.14, G:0.31, T:0.32
Consensus pattern (57 bp):
TTGTGGGCTTTGAAAAGATGCCACTGACTTGTGGGCTTAGAAAAAGATGTCACTGAC
Found at i:1501589 original size:85 final size:86
Alignment explanation
Indices: 1501433--1501602 Score: 218
Period size: 85 Copynumber: 2.0 Consensus size: 86
1501423 AGAAAAGGAG
* * * * * *
1501433 TGCCACGGAGTTGTGGACTTTGGAAAAGATGCCATTAACTTGTGGGCTTCAGAAAAGGGTGCAGT
1 TGCCACGGACTTGTGGACTTTGAAAAAGATGCCACTAACTTGTGGGCTTCAGAAAAAGATGCACT
*
1501498 GGTTTGTGGGC-TTTGAAGGT
66 GATTTGTGGGCTTTTGAAGGT
* * * *
1501518 TGCCACTGACTTGTGGACTTTGAAAAAGATGTCACTGACTTGTGGGCTT-TGAAAAAGATGCCAC
1 TGCCACGGACTTGTGGACTTTGAAAAAGATGCCACTAACTTGTGGGCTTCAGAAAAAGATG-CAC
1501582 TGATTTGTGGGCTTTTGAAGG
65 TGATTTGTGGGCTTTTGAAGG
1501603 GTGAGGAATG
Statistics
Matches: 72, Mismatches: 11, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
84 8 0.11
85 56 0.78
86 8 0.11
ACGTcount: A:0.24, C:0.14, G:0.32, T:0.31
Consensus pattern (86 bp):
TGCCACGGACTTGTGGACTTTGAAAAAGATGCCACTAACTTGTGGGCTTCAGAAAAAGATGCACT
GATTTGTGGGCTTTTGAAGGT
Found at i:1503080 original size:28 final size:27
Alignment explanation
Indices: 1503049--1503144 Score: 88
Period size: 28 Copynumber: 3.4 Consensus size: 27
1503039 CCCTTTTTTG
*
1503049 TTGTTTTTTTTCTGTTTTGTTTTTT-ATT
1 TTGTTTTTTTT-T-TTTTCTTTTTTCATT
*
1503077 TTGTTTTTGTTTTTTTTCTTTTTTCTTT
1 TTGTTTTT-TTTTTTTTCTTTTTTCATT
* **
1503105 TTGTTTTTTTGTTTATTT-TTTGTTGTTT
1 TTGTTTTTTT-TTT-TTTCTTTTTTCATT
1503133 TTGTTTTTTTTT
1 TTGTTTTTTTTT
1503145 GCGGAGGACG
Statistics
Matches: 60, Mismatches: 4, Indels: 9
0.82 0.05 0.12
Matches are distributed among these distances:
27 14 0.23
28 40 0.67
29 6 0.10
ACGTcount: A:0.02, C:0.03, G:0.10, T:0.84
Consensus pattern (27 bp):
TTGTTTTTTTTTTTTTCTTTTTTCATT
Found at i:1503092 original size:34 final size:35
Alignment explanation
Indices: 1503042--1503141 Score: 104
Period size: 34 Copynumber: 3.0 Consensus size: 35
1503032 ATCCGGACCC
1503042 TTTT-TTG-TTGTTTTTTTTCTGTTTTGTTTTTTA
1 TTTTGTTGTTTGTTTTTTTTCTGTTTTGTTTTTTA
*
1503075 TTTTGTT-TTTGTTTTTTTTCT-TTTT-TCTTTTTG
1 TTTTGTTGTTTGTTTTTTTTCTGTTTTGT-TTTTTA
* * *
1503108 TTTTTTTGTTTATTTTTTGT-TGTTTTTGTTTTTT
1 TTTTGTTGTTTGTTTTTTTTCTG-TTTTGTTTTTT
1503142 TTTGCGGAGG
Statistics
Matches: 56, Mismatches: 4, Indels: 12
0.78 0.06 0.17
Matches are distributed among these distances:
32 1 0.02
33 20 0.36
34 25 0.45
35 9 0.16
36 1 0.02
ACGTcount: A:0.02, C:0.03, G:0.11, T:0.84
Consensus pattern (35 bp):
TTTTGTTGTTTGTTTTTTTTCTGTTTTGTTTTTTA
Found at i:1503099 original size:41 final size:41
Alignment explanation
Indices: 1503042--1503141 Score: 118
Period size: 41 Copynumber: 2.5 Consensus size: 41
1503032 ATCCGGACCC
*
1503042 TTTT-TTGTTGTT-TTTTTTCTGTTTTGTTTTTTAT-TTT-GT
1 TTTTGTTGTTTTTCTTTTTTCT-TTTTGTTTTTT-TGTTTAGT
* *
1503081 TTTTGTTTTTTTTCTTTTTTCTTTTTGTTTTTTTGTTTATT
1 TTTTGTTGTTTTTCTTTTTTCTTTTTGTTTTTTTGTTTAGT
*
1503122 TTTTGTTGTTTTTGTTTTTT
1 TTTTGTTGTTTTTCTTTTTT
1503142 TTTGCGGAGG
Statistics
Matches: 52, Mismatches: 5, Indels: 6
0.83 0.08 0.10
Matches are distributed among these distances:
39 5 0.10
40 20 0.38
41 27 0.52
ACGTcount: A:0.02, C:0.03, G:0.11, T:0.84
Consensus pattern (41 bp):
TTTTGTTGTTTTTCTTTTTTCTTTTTGTTTTTTTGTTTAGT
Found at i:1503161 original size:1 final size:1
Alignment explanation
Indices: 1503042--1503144 Score: 62
Period size: 1 Copynumber: 103.0 Consensus size: 1
1503032 ATCCGGACCC
* * * * * * * * * *
1503042 TTTTTTGTTGTTTTTTTTCTGTTTTGTTTTTTATTTTGTTTTTGTTTTTTTTCTTTTTTCTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* * * * * *
1503107 GTTTTTTTGTTTATTTTTTGTTGTTTTTGTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1503145 GCGGAGGACG
Statistics
Matches: 70, Mismatches: 32, Indels: 0
0.69 0.31 0.00
Matches are distributed among these distances:
1 70 1.00
ACGTcount: A:0.02, C:0.03, G:0.11, T:0.84
Consensus pattern (1 bp):
T
Done.