Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold326
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1352760
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.34
File 5 of 8
Found at i:765882 original size:13 final size:13
Alignment explanation
Indices: 765864--765888 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
765854 ACATAAGTGT
765864 TGTATCGATACAA
1 TGTATCGATACAA
765877 TGTATCGATACA
1 TGTATCGATACA
765889 TAAGTTTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:765886 original size:32 final size:32
Alignment explanation
Indices: 765845--765915 Score: 133
Period size: 32 Copynumber: 2.2 Consensus size: 32
765835 AAACAGAAAT
765845 TGTATCGATACATAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAGTGTTGTATCGATACAA
*
765877 TGTATCGATACATAAGTTTTGTATCGATACAA
1 TGTATCGATACATAAGTGTTGTATCGATACAA
765909 TGTATCG
1 TGTATCG
765916 CTACGAAGCT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 38 1.00
ACGTcount: A:0.32, C:0.13, G:0.18, T:0.37
Consensus pattern (32 bp):
TGTATCGATACATAAGTGTTGTATCGATACAA
Found at i:765978 original size:13 final size:13
Alignment explanation
Indices: 765960--765984 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
765950 ATTACTCAAA
765960 TGTATCGATACAT
1 TGTATCGATACAT
765973 TGTATCGATACA
1 TGTATCGATACA
765985 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:766037 original size:52 final size:52
Alignment explanation
Indices: 765993--766118 Score: 207
Period size: 52 Copynumber: 2.4 Consensus size: 52
765983 CACTGATCTT
*
765993 TGTATCGATACATGCAGGCAAATTTGCCTAGATGTATCGATACACTATGAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATGAAA
* * *
766045 TGTATCGATACATACAGGCAAATTTGCCCAGATGTATTGAAACACTATGAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATGAAA
*
766097 TATATCGATACATGCAGGCAAA
1 TGTATCGATACATGCAGGCAAA
766119 ATTTCATATT
Statistics
Matches: 68, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
52 68 1.00
ACGTcount: A:0.37, C:0.17, G:0.18, T:0.27
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATGAAA
Found at i:773048 original size:13 final size:13
Alignment explanation
Indices: 773032--773065 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
773022 AAAATGATGA
773032 AAAAAAAACAAAC
1 AAAAAAAACAAAC
*
773045 AAAAAAAACACAC
1 AAAAAAAACAAAC
773058 ATAAAAAA
1 A-AAAAAA
773066 GTGCAAAGGC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 13 0.68
14 6 0.32
ACGTcount: A:0.82, C:0.15, G:0.00, T:0.03
Consensus pattern (13 bp):
AAAAAAAACAAAC
Found at i:773426 original size:26 final size:27
Alignment explanation
Indices: 773380--773430 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
773370 TAATCTTCAC
773380 ACAAAAAAAAAAAAAACAGAAAAACAA
1 ACAAAAAAAAAAAAAACAGAAAAACAA
*
773407 ACAAACAAAAAAAAAA-AGAAAAAC
1 ACAAAAAAAAAAAAAACAGAAAAAC
773431 CCCTTTTCAC
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
26 8 0.35
27 15 0.65
ACGTcount: A:0.84, C:0.12, G:0.04, T:0.00
Consensus pattern (27 bp):
ACAAAAAAAAAAAAAACAGAAAAACAA
Found at i:774404 original size:31 final size:30
Alignment explanation
Indices: 774368--774615 Score: 232
Period size: 31 Copynumber: 8.0 Consensus size: 30
774358 TTTAAATACC
*
774368 TTCTTAAAGTCCACGACTCAGTGGCAATCTC
1 TTCTTAAAGTCCACGACTCAGTGGC-ATCTT
774399 TTCTTAAAG-CTCACGACTCAGTGGCAT-TT
1 TTCTTAAAGTC-CACGACTCAGTGGCATCTT
**
774428 TGTCCCAAAGTCCACGACTCAGTGGCATCTT
1 T-TCTTAAAGTCCACGACTCAGTGGCATCTT
*
774459 TTCTTCAAAGTTCACGACTCAGTGGCATCTT
1 TTCTT-AAAGTCCACGACTCAGTGGCATCTT
* *
774490 TTTTTCAAATTCCACGACTCAGTGGCATCTCT
1 TTCTT-AAAGTCCACGACTCAGTGGCATCT-T
* * * *
774522 TTC-CAAAGTCCATGACTTAGTGGCATTTT
1 TTCTTAAAGTCCACGACTCAGTGGCATCTT
* * * *
774551 TTCTCTAAAGCCCACCACTCCGTGGCACCTT
1 TTCT-TAAAGTCCACGACTCAGTGGCATCTT
* * *
774582 TTCCTTTTTAAGTCCACAACTCCGTGGCATCTT
1 TT-C--TTAAAGTCCACGACTCAGTGGCATCTT
774615 T
1 T
774616 CTCCTTTTCA
Statistics
Matches: 179, Mismatches: 27, Indels: 20
0.79 0.12 0.09
Matches are distributed among these distances:
29 6 0.03
30 47 0.26
31 98 0.55
32 4 0.02
33 23 0.13
34 1 0.01
ACGTcount: A:0.22, C:0.29, G:0.15, T:0.33
Consensus pattern (30 bp):
TTCTTAAAGTCCACGACTCAGTGGCATCTT
Found at i:774530 original size:92 final size:91
Alignment explanation
Indices: 774368--774577 Score: 248
Period size: 92 Copynumber: 2.3 Consensus size: 91
774358 TTTAAATACC
774368 TTCTTAAAGTCCACGACTCAGTGGCAATCTCTTCTTAAAGCTCACGACTCAGTGGCATTTTGTCC
1 TTCTTAAAGTCCACGACTCAGTGGCAATCTCTTCTTAAAGCTCACGACTCAGTGGCATTTTGTCC
774433 CAAAGTCCACGACTCAGTGGCATCTT
66 CAAAGTCCACGACTCAGTGGCATCTT
* * * *
774459 TTCTTCAAAGTTCACGACTCAGTGGC-ATCTTTTTTTCAAA-TTCCACGACTCAGTGGCATCTCT
1 TTCTT-AAAGTCCACGACTCAGTGGCAATCTCTTCTT-AAAGCT-CACGACTCAGTGGCAT-T-T
* * *
774522 T-T-CCAAAGTCCATGACTTAGTGGCATTTT
61 TGTCCCAAAGTCCACGACTCAGTGGCATCTT
* * *
774551 TTCTCTAAAGCCCACCACTCCGTGGCA
1 TTCT-TAAAGTCCACGACTCAGTGGCA
774578 CCTTTTCCTT
Statistics
Matches: 101, Mismatches: 11, Indels: 12
0.81 0.09 0.10
Matches are distributed among these distances:
91 14 0.14
92 82 0.81
93 3 0.03
94 2 0.02
ACGTcount: A:0.23, C:0.29, G:0.16, T:0.32
Consensus pattern (91 bp):
TTCTTAAAGTCCACGACTCAGTGGCAATCTCTTCTTAAAGCTCACGACTCAGTGGCATTTTGTCC
CAAAGTCCACGACTCAGTGGCATCTT
Found at i:774577 original size:61 final size:59
Alignment explanation
Indices: 774368--774585 Score: 231
Period size: 61 Copynumber: 3.6 Consensus size: 59
774358 TTTAAATACC
* * *
774368 TTCTTAAAGTCCACGACTCAGTGGCAATCTCTTCTTAAAG-CTCACGACTCAGTGGCATTTT
1 TTCTCAAAGTCCACGACTCAGTGGC-ATCTTTTC-CAAAGTC-CACGACTCAGTGGCATTTT
* * *
774429 GTCCCAAAGTCCACGACTCAGTGGCATCTTTTCTTCAAAGTTCACGACTCAGTGGCATCTTT
1 TTCTCAAAGTCCACGACTCAGTGGCATCTTTTC--CAAAGTCCACGACTCAGTGGCAT-TTT
* * * *
774491 TTTTCAAATTCCACGACTCAGTGGCATCTCTTTCCAAAGTCCATGACTTAGTGGCATTTT
1 TTCTCAAAGTCCACGACTCAGTGGCATCT-TTTCCAAAGTCCACGACTCAGTGGCATTTT
* * * *
774551 TTCTCTAAAGCCCACCACTCCGTGGCACCTTTTCC
1 TTCTC-AAAGTCCACGACTCAGTGGCATCTTTTCC
774586 TTTTTAAGTC
Statistics
Matches: 133, Mismatches: 19, Indels: 11
0.82 0.12 0.07
Matches are distributed among these distances:
60 19 0.14
61 82 0.62
62 28 0.21
63 4 0.03
ACGTcount: A:0.22, C:0.29, G:0.16, T:0.33
Consensus pattern (59 bp):
TTCTCAAAGTCCACGACTCAGTGGCATCTTTTCCAAAGTCCACGACTCAGTGGCATTTT
Found at i:774615 original size:92 final size:90
Alignment explanation
Indices: 774414--774616 Score: 210
Period size: 92 Copynumber: 2.2 Consensus size: 90
774404 AAAGCTCACG
* ** *
774414 ACTCAGTGGCATTTTGTCCCAAAGTCCACGACTCAGTGGCATCTTTTCTTCAAAGTTCACGACTC
1 ACTCAGTGGCATCTT-T-CCAAAGTCCACGACTCAGTGGCATCTTTTCTTCAAAGCCCACCACTC
* * *
774479 AGTGGCATCTTTTTTTCAAATTCCACG
64 AGTGGCACCTTTTTTTCAAAGTCCACA
* * *
774506 ACTCAGTGGCATCTCTTTCCAAAGTCCATGACTTAGTGGCATTTTTTC-TCTAAAGCCCACCACT
1 ACTCAGTGGCA--TCTTTCCAAAGTCCACGACTCAGTGGCATCTTTTCTTC-AAAGCCCACCACT
* **
774570 CCGTGGCACCTTTTCCTTTTTAAGTCCACA
63 CAGTGGCACCTTTT--TTTCAAAGTCCACA
*
774600 ACTCCGTGGCATCTTTC
1 ACTCAGTGGCATCTTTC
774617 TCCTTTTCAA
Statistics
Matches: 92, Mismatches: 14, Indels: 10
0.79 0.12 0.09
Matches are distributed among these distances:
91 2 0.02
92 66 0.72
93 1 0.01
94 23 0.25
ACGTcount: A:0.21, C:0.30, G:0.15, T:0.34
Consensus pattern (90 bp):
ACTCAGTGGCATCTTTCCAAAGTCCACGACTCAGTGGCATCTTTTCTTCAAAGCCCACCACTCAG
TGGCACCTTTTTTTCAAAGTCCACA
Found at i:774645 original size:36 final size:33
Alignment explanation
Indices: 774556--774646 Score: 101
Period size: 33 Copynumber: 2.7 Consensus size: 33
774546 ATTTTTTCTC
*
774556 TAAAGCCCACCACTCCGTGGCACCTTTTCCTTT
1 TAAAGCCCACAACTCCGTGGCACCTTTTCCTTT
* * *
774589 TTAAGTCCACAACTCCGTGGCATCTTTCTCCTTT
1 TAAAGCCCACAACTCCGTGGCACCTTT-TCCTTT
* *
774623 TCAAAAGCCCACAAGTCAGTGGCA
1 T--AAAGCCCACAACTCCGTGGCA
774647 AACTTCAAAA
Statistics
Matches: 47, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
33 23 0.49
34 7 0.15
36 17 0.36
ACGTcount: A:0.23, C:0.34, G:0.14, T:0.29
Consensus pattern (33 bp):
TAAAGCCCACAACTCCGTGGCACCTTTTCCTTT
Found at i:774749 original size:49 final size:49
Alignment explanation
Indices: 774683--775544 Score: 755
Period size: 49 Copynumber: 17.9 Consensus size: 49
774673 GGCATCTTCT
* * * *
774683 TTTAAGCCCAATATCGCTGGCCTTGAATTAGCATATTGGCACCCTTGTC
1 TTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCCTTGTC
* * *
774732 TTTAAGACTAATGTCGCTGGCCTTGAATCAACACATTGGCA--C----C
1 TTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCCTTGTC
* * * * * *
774775 TTTAAGTCCAATATCGTTGGCCTTGAATCAGCATATTGGCACCTTTTTT
1 TTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCCTTGTC
* * *
774824 TTTAAGACAAATGTCACTGGCCTTGAATCAGCACATTGGCA------TC
1 TTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCCTTGTC
* * * *
774867 TTTAAGTCCAATATCGCTGGCCTTAAATCAGCATATTGGCACCTTTGTC
1 TTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCCTTGTC
* * *
774916 TTTAAGACCAATGTCGCTGGTCTTAAATCAGCACATTGGCA--C----C
1 TTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCCTTGTC
* * * *
774959 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTT
1 TTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCCTTGTC
* *
775008 TTTAAGACCAATGCCGCTGGCCTTGAATCAGCACATTGGCA--C----C
1 TTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCCTTGTC
* * * *
775051 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTT
1 TTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCCTTGTC
* *
775100 TTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTAGCA--C----C
1 TTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCCTTGTC
* * * *
775143 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATC
1 TTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCCTTG---TC
* *
775195 TTTTAAGTCCAATGTCGCTGGCATTGAATCAGCACATTGGCA-CCTTCATC
1 -TTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCCTT-GTC
* * * *
775245 TTTAAGTTCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTC
1 TTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCCTTGTC
*
775294 ATATTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCA-CCTTCATC
1 ----TTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCCTT-GTC
* * * * *
775347 TTTAAGTCCAATATCGCTGGCCTTAAATCAGCATATTGGCGCCTTTGTCATC
1 TTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCCTTG---TC
* * *
775399 TTTTAAGTCTAATGTCGCTAGCCTTGAATCAGCACATTGGCA-CCTTCATC
1 -TTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCCTT-GTC
** * ** *
775449 TTTAAGTCCAACATCGCTGGCCTTGAATCAGCATATTGGCGTCTTTGTCATC
1 TTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCCTTG---TC
* * *
775501 TTTTAAGTCTAATGTCGTTGGCTTTGAATCAGCACATTGGCACC
1 -TTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACC
775545 TTCATCTTTA
Statistics
Matches: 651, Mismatches: 110, Indels: 100
0.76 0.13 0.12
Matches are distributed among these distances:
43 182 0.28
47 1 0.00
49 294 0.45
50 13 0.02
52 14 0.02
53 147 0.23
ACGTcount: A:0.24, C:0.25, G:0.18, T:0.33
Consensus pattern (49 bp):
TTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCCTTGTC
Found at i:774776 original size:21 final size:21
Alignment explanation
Indices: 774752--774819 Score: 50
Period size: 21 Copynumber: 3.2 Consensus size: 21
774742 ATGTCGCTGG
774752 CCTTGAATCAACACATTGGCA
1 CCTTGAATCAACACATTGGCA
* * *
774773 CCTTTAAGTCCAATATCGTTGG--
1 CCTTGAA-T-CAACA-CATTGGCA
* *
774795 CCTTGAATCAGCATATTGGCA
1 CCTTGAATCAACACATTGGCA
774816 CCTT
1 CCTT
774820 TTTTTTTAAG
Statistics
Matches: 34, Mismatches: 8, Indels: 10
0.65 0.15 0.19
Matches are distributed among these distances:
19 4 0.12
20 3 0.09
21 11 0.32
22 7 0.21
23 4 0.12
24 5 0.15
ACGTcount: A:0.26, C:0.26, G:0.16, T:0.31
Consensus pattern (21 bp):
CCTTGAATCAACACATTGGCA
Found at i:774844 original size:92 final size:92
Alignment explanation
Indices: 774683--775546 Score: 1089
Period size: 92 Copynumber: 9.0 Consensus size: 92
774673 GGCATCTTCT
* * * * * *
774683 TTTAAGCCCAATATCGCTGGCCTTGAATTAGCATATTGGCACCCTTGTCTTTAAGACTAATGTCG
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTTTTTTTAAGACCAATGTCG
*
774748 CTGGCCTTGAATCAACACATTGGCACC
66 CTGGCCTTGAATCAGCACATTGGCACC
* * *
774775 TTTAAGTCCAATATCGTTGGCCTTGAATCAGCATATTGGCACCTTTTTTTTTAAGACAAATGTCA
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTTTTTTTAAGACCAATGTCG
*
774840 CTGGCCTTGAATCAGCACATTGGCATC
66 CTGGCCTTGAATCAGCACATTGGCACC
* * *
774867 TTTAAGTCCAATATCGCTGGCCTTAAATCAGCATATTGGCACCTTTGTCTTTAAGACCAATGTCG
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTTTTTTTAAGACCAATGTCG
* *
774932 CTGGTCTTAAATCAGCACATTGGCACC
66 CTGGCCTTGAATCAGCACATTGGCACC
* *
774959 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTTTTTAAGACCAATGCCG
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTTTTTTTAAGACCAATGTCG
775024 CTGGCCTTGAATCAGCACATTGGCACC
66 CTGGCCTTGAATCAGCACATTGGCACC
*
775051 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTTTTTAAGACCAATGTCG
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTTTTTTTAAGACCAATGTCG
*
775116 CTGGCCTTGAATCAGCACATTAGCACC
66 CTGGCCTTGAATCAGCACATTGGCACC
* *
775143 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATCTTTTAAGTCCAAT
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTT-T--T-TTTTAAGACCAAT
*
775208 GTCGCTGGCATTGAATCAGCACATTGGCACCTTCATC
62 GTCGCTGGCCTTGAATCAGCACATTGGCA----C--C
* *
775245 TTTAAGTTCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTCATATTTTAAGTCCAAT
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTT-T--T-TTTTAAGACCAAT
775310 GTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATC
62 GTCGCTGGCCTTGAATCAGCACATTGGCA----C--C
* * * *
775347 TTTAAGTCCAATATCGCTGGCCTTAAATCAGCATATTGGCGCCTTTGTCATCTTTTAAGTCTAAT
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTT-T--T-TTTTAAGACCAAT
*
775412 GTCGCTAGCCTTGAATCAGCACATTGGCACCTTCATC
62 GTCGCTGGCCTTGAATCAGCACATTGGCA----C--C
* ** * *
775449 TTTAAGTCCAACATCGCTGGCCTTGAATCAGCATATTGGCGTCTTTGTCATCTTTTAAGTCTAAT
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTT-T--T-TTTTAAGACCAAT
* *
775514 GTCGTTGGCTTTGAATCAGCACATTGGCACC
62 GTCGCTGGCCTTGAATCAGCACATTGGCACC
775545 TT
1 TT
775547 CATCTTTATC
Statistics
Matches: 715, Mismatches: 47, Indels: 16
0.92 0.06 0.02
Matches are distributed among these distances:
92 387 0.54
95 1 0.00
96 42 0.06
98 1 0.00
100 1 0.00
102 283 0.40
ACGTcount: A:0.24, C:0.25, G:0.18, T:0.33
Consensus pattern (92 bp):
TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTTTTTTTAAGACCAATGTCG
CTGGCCTTGAATCAGCACATTGGCACC
Found at i:775223 original size:53 final size:53
Alignment explanation
Indices: 775143--775546 Score: 526
Period size: 53 Copynumber: 7.8 Consensus size: 53
775133 CATTAGCACC
* *
775143 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATCT
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTTGTCATCT
* *
775196 TTTAAGTCCAATGTCGCTGGCATTGAATCAGCACATTGGCACC--T-TCATC-
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTTGTCATCT
* * *
775245 TTTAAGTTCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTCATAT
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTTGTCATCT
*
775298 TTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACC--T-TCATC-
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTTGTCATCT
* * *
775347 TTTAAGTCCAATATCGCTGGCCTTAAATCAGCATATTGGCGCCTTTGTCATCT
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTTGTCATCT
* * *
775400 TTTAAGTCTAATGTCGCTAGCCTTGAATCAGCACATTGGCACC--T-TCATC-
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTTGTCATCT
* * **
775449 TTTAAGTCCAACATCGCTGGCCTTGAATCAGCATATTGGCGTCTTTGTCATCT
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTTGTCATCT
* * * *
775502 TTTAAGTCTAATGTCGTTGGCTTTGAATCAGCACATTGGCACCTT
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTT
775547 CATCTTTATC
Statistics
Matches: 301, Mismatches: 38, Indels: 24
0.83 0.10 0.07
Matches are distributed among these distances:
49 114 0.38
50 14 0.05
51 6 0.02
52 14 0.05
53 153 0.51
ACGTcount: A:0.23, C:0.25, G:0.18, T:0.35
Consensus pattern (53 bp):
TTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTTGTCATCT
Found at i:776212 original size:52 final size:52
Alignment explanation
Indices: 776151--776276 Score: 216
Period size: 52 Copynumber: 2.4 Consensus size: 52
776141 CACTGATCTT
* *
776151 TGTATCGATACACGTAGGCACATTTGCCCAGATGTATCGATACACTATGAAA
1 TGTATCGATACATGTAGGCAAATTTGCCCAGATGTATCGATACACTATGAAA
* *
776203 TGTATCGATACATATAAGCAAATTTGCCCAGATGTATCGATACACTATGAAA
1 TGTATCGATACATGTAGGCAAATTTGCCCAGATGTATCGATACACTATGAAA
776255 TGTATCGATACATGTAGGCAAA
1 TGTATCGATACATGTAGGCAAA
776277 ATTTCATATT
Statistics
Matches: 68, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
52 68 1.00
ACGTcount: A:0.36, C:0.18, G:0.18, T:0.28
Consensus pattern (52 bp):
TGTATCGATACATGTAGGCAAATTTGCCCAGATGTATCGATACACTATGAAA
Found at i:780363 original size:23 final size:25
Alignment explanation
Indices: 780320--780371 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 25
780310 TTGTAAAAAA
780320 AATATTTTAATAATATTAATTGA-AAT
1 AATATTTTAATAATA-TAATT-ATAAT
780346 AATATTTTAATAA-A-AATTATAAT
1 AATATTTTAATAATATAATTATAAT
780369 AAT
1 AAT
780372 TTAAATATTT
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
22 1 0.04
23 10 0.40
25 1 0.04
26 13 0.52
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (25 bp):
AATATTTTAATAATATAATTATAAT
Found at i:780996 original size:13 final size:13
Alignment explanation
Indices: 780978--781035 Score: 53
Period size: 13 Copynumber: 4.0 Consensus size: 13
780968 ACATAAGTGT
780978 TGTATCGATACAA
1 TGTATCGATACAA
780991 TGTATCGATACATAA
1 TGTATCGATAC--AA
781006 GTTTTGTATCGATACAA
1 ----TGTATCGATACAA
*
781023 TGTATCGCTACAA
1 TGTATCGATACAA
781036 AGCTACTACC
Statistics
Matches: 38, Mismatches: 1, Indels: 12
0.75 0.02 0.24
Matches are distributed among these distances:
13 23 0.61
15 2 0.05
17 2 0.05
19 11 0.29
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:781015 original size:19 final size:19
Alignment explanation
Indices: 780936--781021 Score: 67
Period size: 19 Copynumber: 4.7 Consensus size: 19
780926 ATTTCAATAA
*
780936 TTTGTATCGATACAAACAGT
1 TTTGTATCGATACATA-AGT
** *
780956 AAATGTATCAATACATAAGT
1 -TTTGTATCGATACATAAGT
*
780976 GTTGTATCGATAC--AA--
1 TTTGTATCGATACATAAGT
780991 --TGTATCGATACATAAGT
1 TTTGTATCGATACATAAGT
781008 TTTGTATCGATACA
1 TTTGTATCGATACA
781022 ATGTATCGCT
Statistics
Matches: 52, Mismatches: 7, Indels: 14
0.71 0.10 0.19
Matches are distributed among these distances:
13 11 0.21
15 2 0.04
17 2 0.04
19 22 0.42
20 3 0.06
21 12 0.23
ACGTcount: A:0.37, C:0.13, G:0.15, T:0.35
Consensus pattern (19 bp):
TTTGTATCGATACATAAGT
Found at i:781029 original size:32 final size:32
Alignment explanation
Indices: 780957--781034 Score: 129
Period size: 32 Copynumber: 2.4 Consensus size: 32
780947 ACAAACAGTA
*
780957 AATGTATCAATACATAAGTGTTGTATCGATAC
1 AATGTATCGATACATAAGTGTTGTATCGATAC
*
780989 AATGTATCGATACATAAGTTTTGTATCGATAC
1 AATGTATCGATACATAAGTGTTGTATCGATAC
*
781021 AATGTATCGCTACA
1 AATGTATCGATACA
781035 AAGCTACTAC
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
32 43 1.00
ACGTcount: A:0.36, C:0.14, G:0.15, T:0.35
Consensus pattern (32 bp):
AATGTATCGATACATAAGTGTTGTATCGATAC
Found at i:781091 original size:13 final size:13
Alignment explanation
Indices: 781073--781098 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
781063 TATTTTTCAA
781073 TGTATCGATACAT
1 TGTATCGATACAT
781086 TGTATCGATACAT
1 TGTATCGATACAT
781099 CGATCTTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:783867 original size:79 final size:79
Alignment explanation
Indices: 783495--783859 Score: 568
Period size: 79 Copynumber: 4.6 Consensus size: 79
783485 CCCGTTAATC
* * * * *
783495 ATCGGGGATACTCCAACCCCGTCACTTCCGAGGGGATACTCTAACCCCGGTTTTATTTCTAAAAT
1 ATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGGCTTTATTCCTAAAAT
783560 ATTGATTTCTCACA
66 ATTGATTTCTCACA
* **
783574 ATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCTAGCTTTATTCCTAAAAT
1 ATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGGCTTTATTCCTAAAAT
*
783639 ATTGATTTCTCATA
66 ATTGATTTCTCACA
* * ** *
783653 ATCGGGGACACTCCAACCTCGTTATTTTTGAGGGGATACTCCAACCCCGGCTTTATTTCTAAAAT
1 ATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGGCTTTATTCCTAAAAT
*
783718 ATAGATTTCTCACA
66 ATTGATTTCTCACA
783732 ATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGGCTTTATTCCTAAAAT
1 ATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGGCTTTATTCCTAAAAT
783797 ATTGATTTCTCACA
66 ATTGATTTCTCACA
* * *
783811 ATCGGAGATACTCCAACCCTGTTATTTCCAAGGGGATACTCCAACCCCG
1 ATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCG
783860 ATTTTATTTC
Statistics
Matches: 260, Mismatches: 26, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
79 260 1.00
ACGTcount: A:0.26, C:0.28, G:0.16, T:0.30
Consensus pattern (79 bp):
ATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGGCTTTATTCCTAAAAT
ATTGATTTCTCACA
Found at i:784333 original size:21 final size:20
Alignment explanation
Indices: 784303--784341 Score: 69
Period size: 21 Copynumber: 1.9 Consensus size: 20
784293 CACATTTTTA
784303 TCTAAATGTATCGATACATT
1 TCTAAATGTATCGATACATT
784323 TCTAGAATGTATCGATACA
1 TCTA-AATGTATCGATACA
784342 AGGTCCAACG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.36, C:0.15, G:0.13, T:0.36
Consensus pattern (20 bp):
TCTAAATGTATCGATACATT
Found at i:784396 original size:13 final size:13
Alignment explanation
Indices: 784378--784434 Score: 60
Period size: 13 Copynumber: 3.9 Consensus size: 13
784368 TTCAACAATT
784378 TGTATCGATACAA
1 TGTATCGATACAA
784391 TGTATCGATACATAA
1 TGTATCGATAC--AA
784406 GTGTTGTATCGATACAA
1 ----TGTATCGATACAA
784423 TGTATCGATACA
1 TGTATCGATACA
784435 TAAGTTTTGT
Statistics
Matches: 38, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
13 23 0.61
15 2 0.05
17 2 0.05
19 11 0.29
ACGTcount: A:0.35, C:0.14, G:0.18, T:0.33
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:784415 original size:19 final size:18
Alignment explanation
Indices: 784391--784453 Score: 73
Period size: 19 Copynumber: 3.7 Consensus size: 18
784381 ATCGATACAA
784391 TGTATCGATACATAAGTGT
1 TGTATCGATACATAAGT-T
784410 TGTATCGATAC--AA---
1 TGTATCGATACATAAGTT
784423 TGTATCGATACATAAGTTT
1 TGTATCGATACATAAG-TT
784442 TGTATCGATACA
1 TGTATCGATACA
784454 ATGTATCGCT
Statistics
Matches: 38, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
13 11 0.29
15 2 0.05
17 2 0.05
19 23 0.61
ACGTcount: A:0.33, C:0.13, G:0.17, T:0.37
Consensus pattern (18 bp):
TGTATCGATACATAAGTT
Found at i:784418 original size:32 final size:32
Alignment explanation
Indices: 784377--784461 Score: 161
Period size: 32 Copynumber: 2.7 Consensus size: 32
784367 TTTCAACAAT
784377 TTGTATCGATACAATGTATCGATACATAAGTG
1 TTGTATCGATACAATGTATCGATACATAAGTG
*
784409 TTGTATCGATACAATGTATCGATACATAAGTT
1 TTGTATCGATACAATGTATCGATACATAAGTG
784441 TTGTATCGATACAATGTATCG
1 TTGTATCGATACAATGTATCG
784462 CTACGAAGCT
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
32 52 1.00
ACGTcount: A:0.33, C:0.13, G:0.18, T:0.36
Consensus pattern (32 bp):
TTGTATCGATACAATGTATCGATACATAAGTG
Found at i:784524 original size:13 final size:13
Alignment explanation
Indices: 784506--784530 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
784496 ATTACTCAAA
784506 TGTATCGATACAT
1 TGTATCGATACAT
784519 TGTATCGATACA
1 TGTATCGATACA
784531 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:788421 original size:27 final size:27
Alignment explanation
Indices: 788391--788443 Score: 88
Period size: 27 Copynumber: 2.0 Consensus size: 27
788381 CTGTCAGATT
**
788391 GATGGCAAAATTTTGTCAATAATGATC
1 GATGGCAAAATTTCATCAATAATGATC
788418 GATGGCAAAATTTCATCAATAATGAT
1 GATGGCAAAATTTCATCAATAATGAT
788444 GCCTTATATT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.40, C:0.11, G:0.17, T:0.32
Consensus pattern (27 bp):
GATGGCAAAATTTCATCAATAATGATC
Found at i:793056 original size:19 final size:20
Alignment explanation
Indices: 793011--793062 Score: 79
Period size: 20 Copynumber: 2.6 Consensus size: 20
793001 TTACAAGCCA
*
793011 ATGTATCGATACATTTTGGG
1 ATGTATCGATACATCTTGGG
*
793031 ATGTATCGATACATCTTGTG
1 ATGTATCGATACATCTTGGG
793051 -TGTATCGATACA
1 ATGTATCGATACA
793063 AATAGTTAAG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
19 12 0.40
20 18 0.60
ACGTcount: A:0.27, C:0.13, G:0.21, T:0.38
Consensus pattern (20 bp):
ATGTATCGATACATCTTGGG
Found at i:793151 original size:20 final size:21
Alignment explanation
Indices: 793104--793156 Score: 72
Period size: 20 Copynumber: 2.6 Consensus size: 21
793094 GCCAATGACC
**
793104 TGTATCGATACATTCTTTTCA
1 TGTATCGATACATTCTGGTCA
*
793125 AGTATCGATACATT-TGGTCA
1 TGTATCGATACATTCTGGTCA
793145 TGTATCGATACA
1 TGTATCGATACA
793157 ATGTATCGAT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
20 15 0.54
21 13 0.46
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.40
Consensus pattern (21 bp):
TGTATCGATACATTCTGGTCA
Found at i:793162 original size:13 final size:13
Alignment explanation
Indices: 793144--793168 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
793134 ACATTTGGTC
793144 ATGTATCGATACA
1 ATGTATCGATACA
793157 ATGTATCGATAC
1 ATGTATCGATAC
793169 TGTGCAAACT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:794221 original size:21 final size:21
Alignment explanation
Indices: 794190--794234 Score: 56
Period size: 20 Copynumber: 2.1 Consensus size: 21
794180 GCTGCTAGTG
*
794190 TGGGGGCTGCCCGGTTGAGACC
1 TGGGGGCTG-CCGGTCGAGACC
*
794212 TGGGGG-TGCCGGTCGCGACC
1 TGGGGGCTGCCGGTCGAGACC
794232 TGG
1 TGG
794235 TGAGTGCTGC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 13 0.62
21 2 0.10
22 6 0.29
ACGTcount: A:0.07, C:0.27, G:0.49, T:0.18
Consensus pattern (21 bp):
TGGGGGCTGCCGGTCGAGACC
Found at i:794533 original size:20 final size:21
Alignment explanation
Indices: 794504--794544 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
794494 TGTTTTTGTT
794504 GATGATTTTG-A-TGAAAAAC
1 GATGATTTTGAAGTGAAAAAC
794523 GATGTATTTTGAAGTGAAAAAC
1 GATG-ATTTTGAAGTGAAAAAC
794545 AAGAAATTTG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 4 0.21
20 6 0.32
21 1 0.05
22 8 0.42
ACGTcount: A:0.41, C:0.05, G:0.22, T:0.32
Consensus pattern (21 bp):
GATGATTTTGAAGTGAAAAAC
Found at i:794726 original size:13 final size:13
Alignment explanation
Indices: 794676--794720 Score: 72
Period size: 13 Copynumber: 3.5 Consensus size: 13
794666 ATAAACCCTT
*
794676 TGTATCGATACAC
1 TGTATCGATACAA
*
794689 TATATCGATACAA
1 TGTATCGATACAA
794702 TGTATCGATACAA
1 TGTATCGATACAA
794715 TGTATC
1 TGTATC
794721 TTTACAGAGA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 29 1.00
ACGTcount: A:0.36, C:0.18, G:0.13, T:0.33
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:794942 original size:8 final size:8
Alignment explanation
Indices: 794929--794954 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
794919 AACATCATTC
794929 ATCACAAA
1 ATCACAAA
794937 ATCACAAA
1 ATCACAAA
794945 ATCACAAA
1 ATCACAAA
794953 AT
1 AT
794955 TTAATCAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.62, C:0.23, G:0.00, T:0.15
Consensus pattern (8 bp):
ATCACAAA
Found at i:807492 original size:13 final size:13
Alignment explanation
Indices: 807452--807514 Score: 69
Period size: 13 Copynumber: 5.0 Consensus size: 13
807442 GGCGTCCTCC
807452 ACAAA-AAAAAAA
1 ACAAACAAAAAAA
* *
807464 AAAAAC-AAACAA
1 ACAAACAAAAAAA
807476 ACAAACAAAAAAA
1 ACAAACAAAAAAA
*
807489 ACAAAGAAAAAAA
1 ACAAACAAAAAAA
807502 AC-AACAACAAAAA
1 ACAAACAA-AAAAA
807515 GGGTCTCGAT
Statistics
Matches: 42, Mismatches: 6, Indels: 5
0.79 0.11 0.09
Matches are distributed among these distances:
12 18 0.43
13 24 0.57
ACGTcount: A:0.84, C:0.14, G:0.02, T:0.00
Consensus pattern (13 bp):
ACAAACAAAAAAA
Found at i:807513 original size:12 final size:13
Alignment explanation
Indices: 807452--807514 Score: 69
Period size: 12 Copynumber: 5.1 Consensus size: 13
807442 GGCGTCCTCC
807452 ACAAA-AAAAAAA
1 ACAAACAAAAAAA
* *
807464 AAAAAC-AAACAA
1 ACAAACAAAAAAA
807476 ACAAACAAAAAAA
1 ACAAACAAAAAAA
*
807489 ACAAAGAAAAAAA
1 ACAAACAAAAAAA
*
807502 AC-AACAACAAAA
1 ACAAACAAAAAAA
807514 A
1 A
807515 GGGTCTCGAT
Statistics
Matches: 42, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
12 23 0.55
13 19 0.45
ACGTcount: A:0.84, C:0.14, G:0.02, T:0.00
Consensus pattern (13 bp):
ACAAACAAAAAAA
Found at i:808993 original size:28 final size:28
Alignment explanation
Indices: 808955--809118 Score: 204
Period size: 28 Copynumber: 5.8 Consensus size: 28
808945 CACATTTTCC
808955 AAAGCCCACAAGTCAGTGGCAACCTTCA
1 AAAGCCCACAAGTCAGTGGCAACCTTCA
* * * *
808983 AAAGCCCACAAGTCCGTGGCATCTTTTCC
1 AAAGCCCACAAGTCAGTGGCAAC-CTTCA
809012 AAAGCCCACAAGTCAGTGGCAACCTTCA
1 AAAGCCCACAAGTCAGTGGCAACCTTCA
* *
809040 AAAGCCCACAAGTAAGTGGCACCCTTTTTC-
1 AAAGCCCACAAGTCAGTGGCAACC---TTCA
* *
809070 AAAGCCCACAAATTAGTGGCAACCTTCA
1 AAAGCCCACAAGTCAGTGGCAACCTTCA
*
809098 AAAGCCCACAAGTCCGTGGCA
1 AAAGCCCACAAGTCAGTGGCA
809119 CATTTTCTTT
Statistics
Matches: 115, Mismatches: 16, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
27 3 0.03
28 64 0.56
29 24 0.21
30 21 0.18
31 3 0.03
ACGTcount: A:0.33, C:0.32, G:0.18, T:0.18
Consensus pattern (28 bp):
AAAGCCCACAAGTCAGTGGCAACCTTCA
Found at i:809095 original size:58 final size:58
Alignment explanation
Indices: 808949--809119 Score: 281
Period size: 57 Copynumber: 3.0 Consensus size: 58
808939 ATTCCTCACA
*
808949 TTTTCCAAAGCCCACAAGTCAGTGGCAACCTTCAAAAGCCCACAAGTCCGTGGCA-TC
1 TTTTCCAAAGCCCACAAGTCAGTGGCAACCTTCAAAAGCCCACAAGTCCGTGGCACCC
**
809006 TTTTCCAAAGCCCACAAGTCAGTGGCAACCTTCAAAAGCCCACAAGTAAGTGGCACCC
1 TTTTCCAAAGCCCACAAGTCAGTGGCAACCTTCAAAAGCCCACAAGTCCGTGGCACCC
* * *
809064 TTTTTCAAAGCCCACAAATTAGTGGCAACCTTCAAAAGCCCACAAGTCCGTGGCAC
1 TTTTCCAAAGCCCACAAGTCAGTGGCAACCTTCAAAAGCCCACAAGTCCGTGGCAC
809120 ATTTTCTTTT
Statistics
Matches: 105, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
57 53 0.50
58 52 0.50
ACGTcount: A:0.32, C:0.32, G:0.17, T:0.19
Consensus pattern (58 bp):
TTTTCCAAAGCCCACAAGTCAGTGGCAACCTTCAAAAGCCCACAAGTCCGTGGCACCC
Found at i:809179 original size:35 final size:33
Alignment explanation
Indices: 809099--809227 Score: 161
Period size: 35 Copynumber: 3.8 Consensus size: 33
809089 CAACCTTCAA
* *
809099 AAGCCCACAAGTCCGTGGCA-CATTTTCTTTTT
1 AAGCCCACAACTCCGTGGCACCCTTTTCTTTTT
*
809131 AAGTCCACAACTCCGTGGCACTCCTTTTCTTTTGT
1 AAGCCCACAACTCCGTGGCAC-CCTTTTCTTTT-T
* *
809166 AAGCCCACAACTCCGTGGCACTCTTTTTCCTTTT
1 AAGCCCACAACTCCGTGGCAC-CCTTTTCTTTTT
* *
809200 AAGCCCACAAGTCAGTGGCACCCTTTTC
1 AAGCCCACAACTCCGTGGCACCCTTTTC
809228 AAAAGCCTAC
Statistics
Matches: 85, Mismatches: 9, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
32 18 0.21
33 6 0.07
34 30 0.35
35 31 0.36
ACGTcount: A:0.20, C:0.33, G:0.15, T:0.33
Consensus pattern (33 bp):
AAGCCCACAACTCCGTGGCACCCTTTTCTTTTT
Found at i:809192 original size:34 final size:33
Alignment explanation
Indices: 809099--809227 Score: 161
Period size: 34 Copynumber: 3.8 Consensus size: 33
809089 CAACCTTCAA
* *
809099 AAGCCCACAAGTCCGTGGCAC-ATTTTCTTTTT
1 AAGCCCACAACTCCGTGGCACTCTTTTCTTTTT
*
809131 AAGTCCACAACTCCGTGGCACTCCTTTTCTTTTGT
1 AAGCCCACAACTCCGTGGCACT-CTTTTCTTTT-T
*
809166 AAGCCCACAACTCCGTGGCACTCTTTTTCCTTTT
1 AAGCCCACAACTCCGTGGCACTC-TTTTCTTTTT
* * *
809200 AAGCCCACAAGTCAGTGGCACCCTTTTC
1 AAGCCCACAACTCCGTGGCACTCTTTTC
809228 AAAAGCCTAC
Statistics
Matches: 85, Mismatches: 8, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
32 19 0.22
33 5 0.06
34 31 0.36
35 30 0.35
ACGTcount: A:0.20, C:0.33, G:0.15, T:0.33
Consensus pattern (33 bp):
AAGCCCACAACTCCGTGGCACTCTTTTCTTTTT
Found at i:809218 original size:69 final size:66
Alignment explanation
Indices: 809099--809227 Score: 177
Period size: 69 Copynumber: 1.9 Consensus size: 66
809089 CAACCTTCAA
* * * *
809099 AAGCCCACAAGTCCGTGGCACATTTTCTTTTTAAGTCCACAACTCCGTGGCACTCCTTTTCTTTT
1 AAGCCCACAACTCCGTGGCACATTTTCCTTTTAAGCCCACAACTCAGTGGCAC-CCTTTTCTTTT
809164 GT
65 GT
* *
809166 AAGCCCACAACTCCGTGGCACTCTTTTTCCTTTTAAGCCCACAAGTCAGTGGCACCCTTTTC
1 AAGCCCACAACTCCGTGGCA--CATTTTCCTTTTAAGCCCACAACTCAGTGGCACCCTTTTC
809228 AAAAGCCTAC
Statistics
Matches: 54, Mismatches: 6, Indels: 3
0.86 0.10 0.05
Matches are distributed among these distances:
67 19 0.35
68 7 0.13
69 28 0.52
ACGTcount: A:0.20, C:0.33, G:0.15, T:0.33
Consensus pattern (66 bp):
AAGCCCACAACTCCGTGGCACATTTTCCTTTTAAGCCCACAACTCAGTGGCACCCTTTTCTTTTG
T
Found at i:809436 original size:87 final size:87
Alignment explanation
Indices: 809284--809626 Score: 596
Period size: 87 Copynumber: 3.9 Consensus size: 87
809274 GGCGTCTTCT
* *
809284 TTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCATAAGCCCAATATCGCTGGCTTTAA
1 TTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCATAAGCCCAATATCGCTGGCCTTAA
*
809349 ATCAGCATATTGGCACCTTATC
66 ATCAGCATATTGGCACCTTGTC
* *
809371 TTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCATAAGCCCATTATCGCTAGCCTTAA
1 TTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCATAAGCCCAATATCGCTGGCCTTAA
809436 ATCAGCATATTGGCACCTTGTC
66 ATCAGCATATTGGCACCTTGTC
**
809458 TTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCATAAGCCCAATATCATTGGCCTTAA
1 TTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCATAAGCCCAATATCGCTGGCCTTAA
*
809523 ATTAGCATATTGGCACCTTGTC
66 ATCAGCATATTGGCACCTTGTC
* *
809545 TTTAGGACTAATGTCGCTGGCCTTGAATCAGCACATTGGCATAAGCCCAATATCGCTGGCCTTAA
1 TTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCATAAGCCCAATATCGCTGGCCTTAA
809610 ATCAGCATATTGGCACC
66 ATCAGCATATTGGCACC
809627 GGCTGGCCTT
Statistics
Matches: 241, Mismatches: 15, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
87 241 1.00
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (87 bp):
TTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCATAAGCCCAATATCGCTGGCCTTAA
ATCAGCATATTGGCACCTTGTC
Found at i:809496 original size:48 final size:48
Alignment explanation
Indices: 809423--809585 Score: 155
Period size: 48 Copynumber: 3.6 Consensus size: 48
809413 AAGCCCATTA
* *
809423 TCGCTAGCCTTAAATCAGCATATTGGCACCTTGTCTTTAAGACCAATG
1 TCGCTGGCCTTAAATCAGCACATTGGCACCTTGTCTTTAAGACCAATG
* * *
809471 TCGCTGGCCTTGAATCAGCACATTGGCA---------TAAGCCCAATA
1 TCGCTGGCCTTAAATCAGCACATTGGCACCTTGTCTTTAAGACCAATG
** * * * *
809510 TCATTGGCCTTAAATTAGCATATTGGCACCTTGTCTTTAGGACTAATG
1 TCGCTGGCCTTAAATCAGCACATTGGCACCTTGTCTTTAAGACCAATG
*
809558 TCGCTGGCCTTGAATCAGCACATTGGCA
1 TCGCTGGCCTTAAATCAGCACATTGGCA
809586 TAAGCCCAAT
Statistics
Matches: 87, Mismatches: 19, Indels: 18
0.70 0.15 0.15
Matches are distributed among these distances:
39 32 0.37
48 55 0.63
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.30
Consensus pattern (48 bp):
TCGCTGGCCTTAAATCAGCACATTGGCACCTTGTCTTTAAGACCAATG
Found at i:809643 original size:68 final size:68
Alignment explanation
Indices: 809560--809694 Score: 261
Period size: 68 Copynumber: 2.0 Consensus size: 68
809550 GACTAATGTC
*
809560 GCTGGCCTTGAATCAGCACATTGGCATAAGCCCAATATCGCTGGCCTTAAATCAGCATATTGGCA
1 GCTGGCCTTGAATCAGCACATTGGCATAAGCCCAATATCACTGGCCTTAAATCAGCATATTGGCA
809625 CCG
66 CCG
809628 GCTGGCCTTGAATCAGCACATTGGCATAAGCCCAATATCACTGGCCTTAAATCAGCATATTGGCA
1 GCTGGCCTTGAATCAGCACATTGGCATAAGCCCAATATCACTGGCCTTAAATCAGCATATTGGCA
809693 CC
66 CC
809695 TTGTCTTTAA
Statistics
Matches: 66, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
68 66 1.00
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (68 bp):
GCTGGCCTTGAATCAGCACATTGGCATAAGCCCAATATCACTGGCCTTAAATCAGCATATTGGCA
CCG
Found at i:809755 original size:155 final size:155
Alignment explanation
Indices: 809473--809781 Score: 582
Period size: 155 Copynumber: 2.0 Consensus size: 155
809463 GACCAATGTC
* *
809473 GCTGGCCTTGAATCAGCACATTGGCATAAGCCCAATATCATTGGCCTTAAATTAGCATATTGGCA
1 GCTGGCCTTGAATCAGCACATTGGCATAAGCCCAATATCACTGGCCTTAAATCAGCATATTGGCA
* *
809538 CCTTGTCTTTAGGACTAATGTCGCTGGCCTTGAATCAGCACATTGGCATAAGCCCAATATCGCTG
66 CCTTGTCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCATAAGCCCAATATCGCTG
809603 GCCTTAAATCAGCATATTGGCACCG
131 GCCTTAAATCAGCATATTGGCACCG
809628 GCTGGCCTTGAATCAGCACATTGGCATAAGCCCAATATCACTGGCCTTAAATCAGCATATTGGCA
1 GCTGGCCTTGAATCAGCACATTGGCATAAGCCCAATATCACTGGCCTTAAATCAGCATATTGGCA
809693 CCTTGTCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCATAAGCCCAATATCGCTG
66 CCTTGTCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCATAAGCCCAATATCGCTG
809758 GCCTTAAATCAGCATATTGGCACC
131 GCCTTAAATCAGCATATTGGCACC
809782 TTGTCTCTAA
Statistics
Matches: 150, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
155 150 1.00
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.27
Consensus pattern (155 bp):
GCTGGCCTTGAATCAGCACATTGGCATAAGCCCAATATCACTGGCCTTAAATCAGCATATTGGCA
CCTTGTCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCATAAGCCCAATATCGCTG
GCCTTAAATCAGCATATTGGCACCG
Found at i:809774 original size:87 final size:87
Alignment explanation
Indices: 809628--809918 Score: 501
Period size: 87 Copynumber: 3.3 Consensus size: 87
809618 ATTGGCACCG
*
809628 GCTGGCCTTGAATCAGCACATTGGCATAAGCCCAATATCACTGGCCTTAAATCAGCATATTGGCA
1 GCTGGCCTTGAATCAGCACATTGGCATAAGCCCAATATCGCTGGCCTTAAATCAGCATATTGGCA
809693 CCTTGTCTTTAAGACCAATGTC
66 CCTTGTCTTTAAGACCAATGTC
809715 GCTGGCCTTGAATCAGCACATTGGCATAAGCCCAATATCGCTGGCCTTAAATCAGCATATTGGCA
1 GCTGGCCTTGAATCAGCACATTGGCATAAGCCCAATATCGCTGGCCTTAAATCAGCATATTGGCA
*
809780 CCTTGTCTCTAAGACCAATGTC
66 CCTTGTCTTTAAGACCAATGTC
* *
809802 GCTGGCCTTGAATCAGCATATTGGCATAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCA
1 GCTGGCCTTGAATCAGCACATTGGCATAAGCCCAATATCGCTGGCCTTAAATCAGCATATTGGCA
*
809867 CCTTAACCATCTTTAAGACCAATGTC
66 CCTT----GTCTTTAAGACCAATGTC
809893 GCTGGCCTTGAATCAGCACATTGGCA
1 GCTGGCCTTGAATCAGCACATTGGCA
809919 CCTTCATCTT
Statistics
Matches: 193, Mismatches: 7, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
87 152 0.79
91 41 0.21
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.27
Consensus pattern (87 bp):
GCTGGCCTTGAATCAGCACATTGGCATAAGCCCAATATCGCTGGCCTTAAATCAGCATATTGGCA
CCTTGTCTTTAAGACCAATGTC
Found at i:809811 original size:242 final size:242
Alignment explanation
Indices: 809386--809868 Score: 867
Period size: 242 Copynumber: 2.0 Consensus size: 242
809376 GACCAATGTC
* *
809386 GCTGGCCTTGAATCAGCACATTGGCATAAGCCCATTATCGCTAGCCTTAAATCAGCATATTGGCA
1 GCTGGCCTTGAATCAGCACATTGGCATAAGCCCAATATCACTAGCCTTAAATCAGCATATTGGCA
*
809451 CCTTGTCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCATAAGCCCAATATCATTG
66 CCTTGTCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCATAAGCCCAATATCACTG
* * * *
809516 GCCTTAAATTAGCATATTGGCACCTTGTCTTTAGGACTAATGTCGCTGGCCTTGAATCAGCACAT
131 GCCTTAAATCAGCATATTGGCACCTTGTCTCTAAGACCAATGTCGCTGGCCTTGAATCAGCACAT
809581 TGGCATAAGCCCAATATCGCTGGCCTTAAATCAGCATATTGGCACCG
196 TGGCATAAGCCCAATATCGCTGGCCTTAAATCAGCATATTGGCACCG
*
809628 GCTGGCCTTGAATCAGCACATTGGCATAAGCCCAATATCACTGGCCTTAAATCAGCATATTGGCA
1 GCTGGCCTTGAATCAGCACATTGGCATAAGCCCAATATCACTAGCCTTAAATCAGCATATTGGCA
*
809693 CCTTGTCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCATAAGCCCAATATCGCTG
66 CCTTGTCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCATAAGCCCAATATCACTG
*
809758 GCCTTAAATCAGCATATTGGCACCTTGTCTCTAAGACCAATGTCGCTGGCCTTGAATCAGCATAT
131 GCCTTAAATCAGCATATTGGCACCTTGTCTCTAAGACCAATGTCGCTGGCCTTGAATCAGCACAT
*
809823 TGGCATAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACC
196 TGGCATAAGCCCAATATCGCTGGCCTTAAATCAGCATATTGGCACC
809869 TTAACCATCT
Statistics
Matches: 230, Mismatches: 11, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
242 230 1.00
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.27
Consensus pattern (242 bp):
GCTGGCCTTGAATCAGCACATTGGCATAAGCCCAATATCACTAGCCTTAAATCAGCATATTGGCA
CCTTGTCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCATAAGCCCAATATCACTG
GCCTTAAATCAGCATATTGGCACCTTGTCTCTAAGACCAATGTCGCTGGCCTTGAATCAGCACAT
TGGCATAAGCCCAATATCGCTGGCCTTAAATCAGCATATTGGCACCG
Found at i:809948 original size:49 final size:50
Alignment explanation
Indices: 809828--810063 Score: 230
Period size: 52 Copynumber: 4.7 Consensus size: 50
809818 CATATTGGCA
* *
809828 TAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTAACCATCTT
1 TAAGCCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTT-A-CATCTT
*
809880 TAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTT-CATCTT
1 TAAGCCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTACATCTT
* * * * * *
809929 TAAGTCCAATATTGTTGGCCTTGAATCAGCATATTGGCATCTTTAACAT-TT
1 TAAGCCCAATGTCGCTGGCCTTGAATCAGCACATTGGCA-CCTT-ACATCTT
* * ** *
809980 CTAAGCCCAATGTTGCTAGCCTTGTCTCAGCACATTGGCA--TT-CTTCTT
1 -TAAGCCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTACATCTT
* * * *
810028 TAAGTCTAATGTCGTTGGCCATGAATCAGCACATTG
1 TAAGCCCAATGTCGCTGGCCTTGAATCAGCACATTG
810064 TCATTCTTCG
Statistics
Matches: 154, Mismatches: 25, Indels: 15
0.79 0.13 0.08
Matches are distributed among these distances:
47 30 0.19
48 2 0.01
49 42 0.27
50 3 0.02
51 2 0.01
52 75 0.49
ACGTcount: A:0.25, C:0.25, G:0.17, T:0.33
Consensus pattern (50 bp):
TAAGCCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTACATCTT
Found at i:810010 original size:101 final size:99
Alignment explanation
Indices: 809828--810063 Score: 296
Period size: 101 Copynumber: 2.4 Consensus size: 99
809818 CATATTGGCA
* *
809828 TAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTAACCATCTTTAAGACCAATGTC
1 TAAGTCCAATATCGTTGGCCTTGAATCAGCATATTGGCACCTTAACCATCTTTAAGACCAATGTC
*
809893 GCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
66 GCTAGCCTTGAATCAGCACATTGGCA--TTCATCTT
* * *
809929 TAAGTCCAATATTGTTGGCCTTGAATCAGCATATTGGCATCTTTAA-CAT-TTCTAAGCCCAATG
1 TAAGTCCAATATCGTTGGCCTTGAATCAGCATATTGGCA-CCTTAACCATCTT-TAAGACCAATG
* ** *
809992 TTGCTAGCCTTGTCTCAGCACATTGGCATTCTTCTT
64 TCGCTAGCCTTGAATCAGCACATTGGCATTCATCTT
* * * *
810028 TAAGTCTAATGTCGTTGGCCATGAATCAGCACATTG
1 TAAGTCCAATATCGTTGGCCTTGAATCAGCATATTG
810064 TCATTCTTCG
Statistics
Matches: 118, Mismatches: 15, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
99 38 0.32
100 2 0.02
101 73 0.62
102 5 0.04
ACGTcount: A:0.25, C:0.25, G:0.17, T:0.33
Consensus pattern (99 bp):
TAAGTCCAATATCGTTGGCCTTGAATCAGCATATTGGCACCTTAACCATCTTTAAGACCAATGTC
GCTAGCCTTGAATCAGCACATTGGCATTCATCTT
Found at i:810839 original size:13 final size:13
Alignment explanation
Indices: 810821--810877 Score: 60
Period size: 13 Copynumber: 3.9 Consensus size: 13
810811 TTCAACAATT
810821 TGTATCGATACAA
1 TGTATCGATACAA
810834 TGTATCGATACATAA
1 TGTATCGATAC--AA
810849 GTGTTGTATCGATACAA
1 ----TGTATCGATACAA
810866 TGTATCGATACA
1 TGTATCGATACA
810878 TAAGTTTTGT
Statistics
Matches: 38, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
13 23 0.61
15 2 0.05
17 2 0.05
19 11 0.29
ACGTcount: A:0.35, C:0.14, G:0.18, T:0.33
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:810858 original size:19 final size:18
Alignment explanation
Indices: 810834--810896 Score: 73
Period size: 19 Copynumber: 3.7 Consensus size: 18
810824 ATCGATACAA
810834 TGTATCGATACATAAGTGT
1 TGTATCGATACATAAGT-T
810853 TGTATCGATAC--AA---
1 TGTATCGATACATAAGTT
810866 TGTATCGATACATAAGTTT
1 TGTATCGATACATAAG-TT
810885 TGTATCGATACA
1 TGTATCGATACA
810897 ATGTATCACT
Statistics
Matches: 38, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
13 11 0.29
15 2 0.05
17 2 0.05
19 23 0.61
ACGTcount: A:0.33, C:0.13, G:0.17, T:0.37
Consensus pattern (18 bp):
TGTATCGATACATAAGTT
Found at i:810861 original size:32 final size:32
Alignment explanation
Indices: 810820--810903 Score: 159
Period size: 32 Copynumber: 2.6 Consensus size: 32
810810 TTTCAACAAT
810820 TTGTATCGATACAATGTATCGATACATAAGTG
1 TTGTATCGATACAATGTATCGATACATAAGTG
*
810852 TTGTATCGATACAATGTATCGATACATAAGTT
1 TTGTATCGATACAATGTATCGATACATAAGTG
810884 TTGTATCGATACAATGTATC
1 TTGTATCGATACAATGTATC
810904 ACTACGAAGC
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
32 51 1.00
ACGTcount: A:0.33, C:0.13, G:0.17, T:0.37
Consensus pattern (32 bp):
TTGTATCGATACAATGTATCGATACATAAGTG
Found at i:811039 original size:52 final size:52
Alignment explanation
Indices: 810982--811214 Score: 403
Period size: 52 Copynumber: 4.5 Consensus size: 52
810972 CACTGATCTT
* *
810982 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATATACTATGAAA
1 TGTATCGATACATGCAGGAAAATTTGCCCAGATGTATCGATACACTATGAAA
*
811034 TGTATCGATACATACAGGAAAATTTGCCCAGATGTATCGATACACTATGAAA
1 TGTATCGATACATGCAGGAAAATTTGCCCAGATGTATCGATACACTATGAAA
*
811086 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATGAAA
1 TGTATCGATACATGCAGGAAAATTTGCCCAGATGTATCGATACACTATGAAA
* *
811138 TATATCGATACATACAGGAAAATTTGCCCAGATGTATCGATACACTATGAAA
1 TGTATCGATACATGCAGGAAAATTTGCCCAGATGTATCGATACACTATGAAA
*
811190 TGTATCGATACATGCAGGTAAATTT
1 TGTATCGATACATGCAGGAAAATTT
811215 TCATATTTCG
Statistics
Matches: 170, Mismatches: 11, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 170 1.00
ACGTcount: A:0.36, C:0.17, G:0.18, T:0.28
Consensus pattern (52 bp):
TGTATCGATACATGCAGGAAAATTTGCCCAGATGTATCGATACACTATGAAA
Found at i:815984 original size:16 final size:16
Alignment explanation
Indices: 815965--815997 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
815955 ATACAAAATG
815965 ACTTAAAACT-AAAGTA
1 ACTT-AAACTCAAAGTA
815981 ACTTAAACTCAAAGTA
1 ACTTAAACTCAAAGTA
815997 A
1 A
815998 TCCAAAATAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 5 0.31
16 11 0.69
ACGTcount: A:0.55, C:0.15, G:0.06, T:0.24
Consensus pattern (16 bp):
ACTTAAACTCAAAGTA
Found at i:816502 original size:49 final size:50
Alignment explanation
Indices: 816437--816537 Score: 168
Period size: 49 Copynumber: 2.0 Consensus size: 50
816427 ATTTTTTTTG
*
816437 GTAAGTGCAATTAAAAATTAAAACACTTGCCTAAC-TTTTTTAAAAAAAA
1 GTAAGTGCAATAAAAAATTAAAACACTTGCCTAACTTTTTTTAAAAAAAA
* *
816486 GTAAGTTCAATAAAAAATTAAAACACTTGCCTAACTTTTTTTTAAAAAAA
1 GTAAGTGCAATAAAAAATTAAAACACTTGCCTAACTTTTTTTAAAAAAAA
816536 GT
1 GT
816538 TTACACTAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
49 33 0.69
50 15 0.31
ACGTcount: A:0.48, C:0.12, G:0.08, T:0.33
Consensus pattern (50 bp):
GTAAGTGCAATAAAAAATTAAAACACTTGCCTAACTTTTTTTAAAAAAAA
Found at i:820066 original size:12 final size:12
Alignment explanation
Indices: 820049--820074 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
820039 ATAAACAACA
820049 TGTGAAAACATG
1 TGTGAAAACATG
820061 TGTGAAAACATG
1 TGTGAAAACATG
820073 TG
1 TG
820075 ACATTTGTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.38, C:0.08, G:0.27, T:0.27
Consensus pattern (12 bp):
TGTGAAAACATG
Found at i:823456 original size:83 final size:83
Alignment explanation
Indices: 823368--823526 Score: 273
Period size: 83 Copynumber: 1.9 Consensus size: 83
823358 AGTGCATTTC
* * *
823368 TGAAACTGAAATTCCTTCCATTCTTCGATTTTTTCATTCTTATGCATGTGGAGGACATTTTGGCC
1 TGAAACTAAAATACCTTCCATTCTTCGATTTTGTCATTCTTATGCATGTGGAGGACATTTTGGCC
823433 CAAAAAGAACAACTTTTT
66 CAAAAAGAACAACTTTTT
* *
823451 TGAAACTAAAATACCTTTCATTCTTTGATTTTGTCATTCTTATGCATGTGGAGGACATTTTGGCC
1 TGAAACTAAAATACCTTCCATTCTTCGATTTTGTCATTCTTATGCATGTGGAGGACATTTTGGCC
823516 CAAAAAGAACA
66 CAAAAAGAACA
823527 GCTAAAAAAG
Statistics
Matches: 71, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
83 71 1.00
ACGTcount: A:0.30, C:0.18, G:0.15, T:0.37
Consensus pattern (83 bp):
TGAAACTAAAATACCTTCCATTCTTCGATTTTGTCATTCTTATGCATGTGGAGGACATTTTGGCC
CAAAAAGAACAACTTTTT
Found at i:824947 original size:11 final size:11
Alignment explanation
Indices: 824931--824955 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
824921 TGCCATTATT
824931 TTTATTATTTA
1 TTTATTATTTA
824942 TTTATTATTTA
1 TTTATTATTTA
824953 TTT
1 TTT
824956 CTAGCTTGGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (11 bp):
TTTATTATTTA
Found at i:837752 original size:13 final size:13
Alignment explanation
Indices: 837734--837758 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
837724 GCTGCATTCT
837734 TAGTATCGATACA
1 TAGTATCGATACA
837747 TAGTATCGATAC
1 TAGTATCGATAC
837759 TGAGTCCTTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TAGTATCGATACA
Found at i:842045 original size:52 final size:52
Alignment explanation
Indices: 841967--842069 Score: 188
Period size: 52 Copynumber: 2.0 Consensus size: 52
841957 AAGTTGCTTG
*
841967 CATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAATTTGCCTA
1 CATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGCCTA
*
842019 CATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAATTTGCCT
1 CATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGCCT
842070 GCATCGATAC
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 49 1.00
ACGTcount: A:0.30, C:0.17, G:0.17, T:0.36
Consensus pattern (52 bp):
CATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGCCTA
Found at i:842171 original size:33 final size:33
Alignment explanation
Indices: 842134--842200 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
842124 AGTAGCTTAA
842134 ATTGTATCGATACAAAAAAATATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
* ***
842167 ATTGTATCGATACAACATTTTATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
842200 A
1 A
842201 AATCATTGAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.40, C:0.13, G:0.12, T:0.34
Consensus pattern (33 bp):
ATTGTATCGATACAAAAAAATATGTATCGATAC
Found at i:842174 original size:13 final size:13
Alignment explanation
Indices: 842156--842180 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
842146 CAAAAAAATA
842156 TGTATCGATACAT
1 TGTATCGATACAT
842169 TGTATCGATACA
1 TGTATCGATACA
842181 ACATTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:843251 original size:49 final size:49
Alignment explanation
Indices: 843130--843510 Score: 521
Period size: 49 Copynumber: 7.7 Consensus size: 49
843120 AAAAGGATGT
* * *
843130 CAATGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAAGATGC
1 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGAT-G--AAGGTGC
* * * *
843182 CAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAAGGTGC
1 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* *
843231 CAATGGGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGC
1 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* * * * *
843280 CAATATGCTGATTCAAGGCCAGCTATATTGGACTTAATGGTG-AGGTGC
1 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
*
843328 CAATGTGCTGAGTCAAGGCCAGCTACATTGTACTTAAAGATGAAGGTGC
1 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
*
843377 CAATGTGCTTAGTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
1 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* *
843426 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTGAAGATAAAGGTGC
1 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* * * * *
843475 CAATATGCTGATTCAAGGCCATCTATATTGGGCTTA
1 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTA
843511 GAAGGGTTGC
Statistics
Matches: 293, Mismatches: 35, Indels: 5
0.88 0.11 0.02
Matches are distributed among these distances:
48 42 0.14
49 213 0.73
51 1 0.00
52 37 0.13
ACGTcount: A:0.31, C:0.18, G:0.26, T:0.25
Consensus pattern (49 bp):
CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
Found at i:843314 original size:98 final size:98
Alignment explanation
Indices: 843130--843515 Score: 594
Period size: 98 Copynumber: 3.9 Consensus size: 98
843120 AAAAGGATGT
* * *
843130 CAATGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAAGATGCCAATATGCTGATT
1 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGAT---AAAGGTGCCAATATGCTGATT
843195 CAAGGCCAGCTATATTGGACTTAAAGGTGAAGGTGC
63 CAAGGCCAGCTATATTGGACTTAAAGGTGAAGGTGC
*
843231 CAATGGGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAA
1 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAA
*
843296 GGCCAGCTATATTGGACTTAATGGTG-AGGTGC
66 GGCCAGCTATATTGGACTTAAAGGTGAAGGTGC
* * * * *
843328 CAATGTGCTGAGTCAAGGCCAGCTACATTGTACTTAAAGATGAAGGTGCCAATGTGCTTAGTCAA
1 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAA
* *
843393 GGCCAGCTACATTGGACTTAAAGATGAAGGTGC
66 GGCCAGCTATATTGGACTTAAAGGTGAAGGTGC
*
843426 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTGAAGATAAAGGTGCCAATATGCTGATTCAA
1 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAA
* *
843491 GGCCATCTATATTGGGCTTAGAAGG
66 GGCCAGCTATATTGGACTTA-AAGG
843516 GTTGCCACCG
Statistics
Matches: 259, Mismatches: 24, Indels: 6
0.90 0.08 0.02
Matches are distributed among these distances:
97 88 0.34
98 130 0.50
99 3 0.01
101 38 0.15
ACGTcount: A:0.31, C:0.18, G:0.26, T:0.25
Consensus pattern (98 bp):
CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAA
GGCCAGCTATATTGGACTTAAAGGTGAAGGTGC
Found at i:843403 original size:146 final size:147
Alignment explanation
Indices: 843121--843510 Score: 541
Period size: 146 Copynumber: 2.6 Consensus size: 147
843111 AAGATGAGAA
* * * *
843121 AAAGGATGTCAATGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAAGATGCCAAT
1 AAAGG-TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT-AA-ATGG-TAAGGTGCCAAT
*
843186 ATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAAGGTGCCAATGGGCTGAGTCAAGGCC
62 ATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGCCAATGGGCTGAGTCAAGGCC
843251 AGCTACATTGGACTTAAAGAT
127 AGCTACATTGGACTTAAAGAT
* * * *
843272 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT-AATGGTGAGGTGCCAATGTGC
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAATGGTAAGGTGCCAATATGC
* * * * *
843336 TGAGTCAAGGCCAGCTACATTGTACTTAAAGATGAAGGTGCCAATGTGCTTAGTCAAGGCCAGCT
66 TGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGCCAATGGGCTGAGTCAAGGCCAGCT
843401 ACATTGGACTTAAAGAT
131 ACATTGGACTTAAAGAT
* * * *
843418 GAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTGAA-GATAAAGGTGCCAATATG
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAATGGT-AAGGTGCCAATATG
* *
843482 CTGATTCAAGGCCATCTATATTGGGCTTA
65 CTGATTCAAGGCCAGCTATATTGGACTTA
843511 GAAGGGTTGC
Statistics
Matches: 211, Mismatches: 26, Indels: 8
0.86 0.11 0.03
Matches are distributed among these distances:
146 129 0.61
147 42 0.20
148 1 0.00
150 34 0.16
151 5 0.02
ACGTcount: A:0.31, C:0.17, G:0.26, T:0.25
Consensus pattern (147 bp):
AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAATGGTAAGGTGCCAATATGC
TGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGCCAATGGGCTGAGTCAAGGCCAGCT
ACATTGGACTTAAAGAT
Found at i:843430 original size:195 final size:197
Alignment explanation
Indices: 843130--843510 Score: 631
Period size: 195 Copynumber: 1.9 Consensus size: 197
843120 AAAAGGATGT
* *
843130 CAATGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAAGATGCCAATATGCTGATT
1 CAATGTGCTGAGTCAAGGCCAGCTACATTGAACTTAAAGATGG-AAAGATGCCAATATGCTGAGT
* *
843195 CAAGGCCAGCTATATTGGACTTAAAGGTGAAGGTGCCAATGGGCTGAGTCAAGGCCAGCTACATT
65 CAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATGGGCTGAGTCAAGGCCAGCTACATT
843260 GGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAATGGTGAGG
130 GGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAATGGTGAGG
843325 TGC
195 TGC
* * * *
843328 CAATGTGCTGAGTCAAGGCCAGCTACATTGTACTTAAAGAT-G-AAGGTGCCAATGTGCTTAGTC
1 CAATGTGCTGAGTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAGATGCCAATATGCTGAGTC
*
843391 AAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTG
66 AAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATGGGCTGAGTCAAGGCCAGCTACATTG
* * *
843456 GACTTGAAGATAAAGGTGCCAATATGCTGATTCAAGGCCATCTATATTGGGCTTA
131 GACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTA
843511 GAAGGGTTGC
Statistics
Matches: 171, Mismatches: 12, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
195 131 0.77
197 1 0.01
198 39 0.23
ACGTcount: A:0.31, C:0.18, G:0.26, T:0.25
Consensus pattern (197 bp):
CAATGTGCTGAGTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAGATGCCAATATGCTGAGTC
AAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATGGGCTGAGTCAAGGCCAGCTACATTG
GACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAATGGTGAGGT
GC
Found at i:843651 original size:34 final size:33
Alignment explanation
Indices: 843503--843672 Score: 260
Period size: 33 Copynumber: 5.2 Consensus size: 33
843493 CCATCTATAT
843503 TGGGC-TTAGAAG--GGTTGCCACCGACTTGTG
1 TGGGCTTTAGAAGAAGGTTGCCACCGACTTGTG
* *
843533 TGGGCTTTAG-AGAGGGTTGCCATCGACTTGTG
1 TGGGCTTTAGAAGAAGGTTGCCACCGACTTGTG
843565 TGGGCTTTAGAAGAAGGTTGCCACCGACTTGTG
1 TGGGCTTTAGAAGAAGGTTGCCACCGACTTGTG
843598 TGGGCTTT-GAAAGAAGGTTGCCACCGACTTGTG
1 TGGGCTTTAG-AAGAAGGTTGCCACCGACTTGTG
*
843631 TGGGCTATAGGAAGAAGGTTGCCACCGACTTGTG
1 TGGGCTTTA-GAAGAAGGTTGCCACCGACTTGTG
843665 TGGGCTTT
1 TGGGCTTT
843673 GGGAAGGGAG
Statistics
Matches: 128, Mismatches: 5, Indels: 10
0.90 0.03 0.07
Matches are distributed among these distances:
30 7 0.05
31 4 0.03
32 28 0.22
33 58 0.45
34 30 0.23
35 1 0.01
ACGTcount: A:0.19, C:0.18, G:0.35, T:0.28
Consensus pattern (33 bp):
TGGGCTTTAGAAGAAGGTTGCCACCGACTTGTG
Found at i:843666 original size:67 final size:66
Alignment explanation
Indices: 843503--843673 Score: 269
Period size: 67 Copynumber: 2.6 Consensus size: 66
843493 CCATCTATAT
* * *
843503 TGGGCT-TAGAAG--GGTTGCCACCGACTTGTGTGGGCTTT-AGAGAGGGTTGCCATCGACTTGT
1 TGGGCTATAGAAGAAGGTTGCCACCGACTTGTGTGGGCTTTGAAAGAAGGTTGCCACCGACTTGT
843564 G
66 G
*
843565 TGGGCTTTAGAAGAAGGTTGCCACCGACTTGTGTGGGCTTTGAAAGAAGGTTGCCACCGACTTGT
1 TGGGCTATAGAAGAAGGTTGCCACCGACTTGTGTGGGCTTTGAAAGAAGGTTGCCACCGACTTGT
843630 G
66 G
843631 TGGGCTATAGGAAGAAGGTTGCCACCGACTTGTGTGGGCTTTG
1 TGGGCTATA-GAAGAAGGTTGCCACCGACTTGTGTGGGCTTTG
843674 GGAAGGGAGA
Statistics
Matches: 100, Mismatches: 4, Indels: 5
0.92 0.04 0.05
Matches are distributed among these distances:
62 6 0.06
63 6 0.06
65 26 0.26
66 29 0.29
67 33 0.33
ACGTcount: A:0.19, C:0.18, G:0.36, T:0.28
Consensus pattern (66 bp):
TGGGCTATAGAAGAAGGTTGCCACCGACTTGTGTGGGCTTTGAAAGAAGGTTGCCACCGACTTGT
G
Found at i:843745 original size:34 final size:33
Alignment explanation
Indices: 843683--844347 Score: 513
Period size: 34 Copynumber: 20.8 Consensus size: 33
843673 GGGAAGGGAG
* *
843683 AAAGA-TGCCATGGAGTTGTGGACTTTAAAGGAAA
1 AAAGAGTGCCACGGAGTTGTGGGC-TTAAAGG-AA
843717 AAAGAGTGCCACGGAGTTGTGGGCTT------A
1 AAAGAGTGCCACGGAGTTGTGGGCTTAAAGGAA
* *
843744 AAAGGGTGCCACGGAGTTGTGGACTTAGAAGGAA
1 AAAGAGTGCCACGGAGTTGTGGGCTTA-AAGGAA
*
843778 AAAGAGTGCCACGGAGTTGTGGACTTAAAAGGAA
1 AAAGAGTGCCACGGAGTTGTGGGCTT-AAAGGAA
*
843812 AACGAGTGCCACGGAGTTGTGGGCTT------A
1 AAAGAGTGCCACGGAGTTGTGGGCTTAAAGGAA
* *
843839 AAAGGGTGCCACGGAGTTGTGGACTTAGAAGGAA
1 AAAGAGTGCCACGGAGTTGTGGGCTTA-AAGGAA
843873 AAAGAGTGCCACGGAGTTGTGGGCTT------A
1 AAAGAGTGCCACGGAGTTGTGGGCTTAAAGGAA
* *
843900 AAAGGGTGCCACGGAGTTGTGGACTTAGAAGGAA
1 AAAGAGTGCCACGGAGTTGTGGGCTTA-AAGGAA
843934 AAAGAGTGCCACGGAGTTGTGGGCTT------A
1 AAAGAGTGCCACGGAGTTGTGGGCTTAAAGGAA
* * *
843961 AAAGGGTGCCACGAAGTTGTGGACTTAGAAGGAA
1 AAAGAGTGCCACGGAGTTGTGGGCTTA-AAGGAA
* *
843995 AAA-AGTGCCACGAAGTTGTGGACTTAAAGATGAA
1 AAAGAGTGCCACGGAGTTGTGGGCTTAAAG--GAA
844029 AAA-AGTGCCACGGAGTTGTGGGCTT------A
1 AAAGAGTGCCACGGAGTTGTGGGCTTAAAGGAA
* * *
844055 AAAGGGTGCCACGGAGTTGTGGGATTTTAA--AA
1 AAAGAGTGCCACGGAGTTGTGGG-CTTAAAGGAA
* *
844087 GAAG-GTGCCACGGAGTTGTGGACTTTAAAAGGGAA
1 AAAGAGTGCCACGGAGTTGTGGGC-TT-AAA-GGAA
*
844122 AAAGGGTGCCACGGAGTTGTGGGCTTAAAAAAGGAAA
1 AAAGAGTGCCACGGAGTTGTGGGCTT---AAAGG-AA
844159 AAAGAGTGCCACGGAGTTGTGGGCTTTAAA--AA
1 AAAGAGTGCCACGGAGTTGTGGGC-TTAAAGGAA
* *
844191 GAAAAAGTGCCACGGAGTGGTGGGCTTTGAGAA-GAA
1 -AAAGAGTGCCACGGAGTTGTGGGC-TT-A-AAGGAA
* *
844227 AAAG-GTTGCCACGGAATTGTGGGCTT-----TA
1 AAAGAG-TGCCACGGAGTTGTGGGCTTAAAGGAA
* ** *
844255 AAAGGGTGCCACGGAGTTGTGGATTTAAAAGAA
1 AAAGAGTGCCACGGAGTTGTGGGCTTAAAGGAA
*
844288 AAAAAGTGCCACGGAGTTGTGGGCTTTAAAAGGAA
1 AAAGAGTGCCACGGAGTTGTGGGC-TT-AAAGGAA
844323 AAAG-GTGCCACGGAGTTGTGGGCTT
1 AAAGAGTGCCACGGAGTTGTGGGCTT
844348 TAAAAGGGTG
Statistics
Matches: 523, Mismatches: 47, Indels: 123
0.75 0.07 0.18
Matches are distributed among these distances:
26 4 0.01
27 116 0.22
28 24 0.05
29 1 0.00
31 19 0.04
32 11 0.02
33 70 0.13
34 168 0.32
35 57 0.11
36 22 0.04
37 29 0.06
38 2 0.00
ACGTcount: A:0.32, C:0.12, G:0.35, T:0.21
Consensus pattern (33 bp):
AAAGAGTGCCACGGAGTTGTGGGCTTAAAGGAA
Found at i:843805 original size:61 final size:59
Alignment explanation
Indices: 843688--844320 Score: 330
Period size: 61 Copynumber: 10.0 Consensus size: 59
843678 GGGAGAAAGA
* *
843688 TGCCATGGAGTTGTGGACTTTAAAGGAAAAAAGAGTGCCACGGAGTTGTGGGCTTAAAAGGG
1 TGCCACGGAGTTGTGGAC-TTAAA-G-AAAAAGAGTGCCACGGAGTTGTGGACTTAAAAGGG
843750 TGCCACGGAGTTGTGGACTTAGAAGGAAAAAGAGTGCCACGGAGTTGTGGACTTAAAAGGAAAAC
1 TGCCACGGAGTTGTGGACTTA-AA-GAAAAAGAGTGCCACGGAGTTGTGGACTTAAAA-G-----
843815 GAG
58 G-G
* * *
843818 TGCCACGGAGTTGTGGGCTT-----AAAAGGGTGCCACGGAGTTGTGGACTTAGAAGGAAAAAGA
1 TGCCACGGAGTTGTGGACTTAAAGAAAAAGAGTGCCACGGAGTTGTGGACTT-------AAAAGG
843878 G
59 G
* * *
843879 TGCCACGGAGTTGTGGGCTT-----AAAAGGGTGCCACGGAGTTGTGGACTTAGAAGGAAAAAGA
1 TGCCACGGAGTTGTGGACTTAAAGAAAAAGAGTGCCACGGAGTTGTGGACTT-------AAAAGG
843939 G
59 G
* * * *
843940 TGCCACGGAGTTGTGGGCTT-----AAAAGGGTGCCACGAAGTTGTGGACTTAGAAGGAAAAAAG
1 TGCCACGGAGTTGTGGACTTAAAGAAAAAGAGTGCCACGGAGTTGTGGACTTAAAAGG------G
* * *
844000 TGCCACGAAGTTGTGGACTTAAAGATGAAAAAAGTGCCACGGAGTTGTGGGCTTAAAAGGG
1 TGCCACGGAGTTGTGGACTTAAAGA--AAAAGAGTGCCACGGAGTTGTGGACTTAAAAGGG
* * *
844061 TGCCACGGAGTTGTGGGATTTTAA-AAGAAG-GTGCCACGGAGTTGTGGACTTTAAAAGGGAAAA
1 TGCCACGGAGTTGT-GGACTTAAAGAAAAAGAGTGCCACGGAGTTGTGGAC-TT--------AAA
844124 AGGG
56 AGGG
* *
844128 TGCCACGGAGTTGTGGGCTTAAAAAAGGAAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAAGA
1 TGCCACGGAGTTGTGGACTT---AAA-G-AAAAAGAGTGCCACGGAGTTGTGGAC-TT-AAAAG-
*
844193 AAAAG
58 ---GG
* * * *
844198 TGCCACGGAGTGGTGGGCTTTGAGAAGAAAAAG-GTTGCCACGGAATTGTGGGCTTTAAAAGGG
1 TGCCACGGAGTTGTGGAC-TT-A-AAGAAAAAGAG-TGCCACGGAGTTGTGGAC-TTAAAAGGG
* * *
844261 TGCCACGGAGTTGTGGATTTAAAAGAAAAAAAGTGCCACGGAGTTGTGGGCTTTAAAAGG
1 TGCCACGGAGTTGTGGACTT-AAAGAAAAAGAGTGCCACGGAGTTGTGGAC-TTAAAAGG
844321 AAAAAGGTGC
Statistics
Matches: 481, Mismatches: 37, Indels: 107
0.77 0.06 0.17
Matches are distributed among these distances:
54 4 0.01
58 18 0.04
59 5 0.01
60 19 0.04
61 217 0.45
62 33 0.07
63 16 0.03
66 10 0.02
67 57 0.12
68 50 0.10
69 4 0.01
70 20 0.04
71 2 0.00
72 5 0.01
73 21 0.04
ACGTcount: A:0.32, C:0.12, G:0.35, T:0.21
Consensus pattern (59 bp):
TGCCACGGAGTTGTGGACTTAAAGAAAAAGAGTGCCACGGAGTTGTGGACTTAAAAGGG
Found at i:843837 original size:95 final size:96
Alignment explanation
Indices: 843683--843904 Score: 394
Period size: 95 Copynumber: 2.3 Consensus size: 96
843673 GGGAAGGGAG
* *
843683 AAAGA-TGCCATGGAGTTGTGGACTTTAAAGGAAAAAAGAGTGCCACGGAGTTGTGGGCTTAAAA
1 AAAGAGTGCCACGGAGTTGTGGACTTAAAAGGAAAAAAGAGTGCCACGGAGTTGTGGGCTTAAAA
843747 GGGTGCCACGGAGTTGTGGACTTAGAAGGAA
66 GGGTGCCACGGAGTTGTGGACTTAGAAGGAA
*
843778 AAAGAGTGCCACGGAGTTGTGGACTTAAAAGG-AAAACGAGTGCCACGGAGTTGTGGGCTTAAAA
1 AAAGAGTGCCACGGAGTTGTGGACTTAAAAGGAAAAAAGAGTGCCACGGAGTTGTGGGCTTAAAA
843842 GGGTGCCACGGAGTTGTGGACTTAGAAGGAA
66 GGGTGCCACGGAGTTGTGGACTTAGAAGGAA
*
843873 AAAGAGTGCCACGGAGTTGTGGGCTTAAAAGG
1 AAAGAGTGCCACGGAGTTGTGGACTTAAAAGG
843905 GTGCCACGGA
Statistics
Matches: 122, Mismatches: 4, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
95 98 0.80
96 24 0.20
ACGTcount: A:0.32, C:0.13, G:0.36, T:0.20
Consensus pattern (96 bp):
AAAGAGTGCCACGGAGTTGTGGACTTAAAAGGAAAAAAGAGTGCCACGGAGTTGTGGGCTTAAAA
GGGTGCCACGGAGTTGTGGACTTAGAAGGAA
Found at i:844036 original size:94 final size:93
Alignment explanation
Indices: 843872--844407 Score: 513
Period size: 94 Copynumber: 5.6 Consensus size: 93
843862 CTTAGAAGGA
* * * *
843872 AAAAGAGTGCCACGGAGTTGTGGGCTTAAAAG-----GGTGCCACGGAGTTGTGGACTTAGA-AG
1 AAAAGGGTGCCACGGAGTTGTGGACTTAAAAGAAAAAAGTGCCACGGAGTTGTGGACTTAAAGAG
843931 GAAAAAGAGTGCCACGGAGTTGTGGGCTT
66 GAAAAAG-GTGCCACGGAGTTGTGGGCTT
* * *
843960 AAAAGGGTGCCACGAAGTTGTGGACTTAGAAGGAAAAAAGTGCCACGAAGTTGTGGACTTAAAGA
1 AAAAGGGTGCCACGGAGTTGTGGACTTA-AAAGAAAAAAGTGCCACGGAGTTGTGGACTTAAAGA
* *
844025 TGAAAAAAGTGCCACGGAGTTGTGGGCTT
65 GGAAAAAGGTGCCACGGAGTTGTGGGCTT
* *
844054 AAAAGGGTGCCACGGAGTTGTGGGATTTTAAAAG---AAGGTGCCACGGAGTTGTGGACTTTAAA
1 AAAAGGGTGCCACGGAGTTGT-GGA-CTTAAAAGAAAAAAGTGCCACGGAGTTGTGGAC-TTAAA
844116 -AGGGAAAAAGGGTGCCACGGAGTTGTGGGCTT
63 GA-GGAAAAA-GGTGCCACGGAGTTGTGGGCTT
* *
844148 AAAAAAGGAAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAA-AGAAAAAGTGCCACGGAGTGGT
1 --AAAA-G------G-GTGCCACGGAGTTGTGGAC-TTAAAAGA-AAAAAGTGCCACGGAGTTGT
* ** * *
844212 GGGCTTTGAGAAGAAAAAGGTTGCCACGGAATTGTGGGCTTT
54 GGACTTAAAGAGGAAAAAGG-TGCCACGGAGTTGTGGGC-TT
* *
844254 AAAAGGGTGCCACGGAGTTGTGGATTTAAAAGAAAAAAAGTGCCACGGAGTTGTGGGCTTTAAA-
1 AAAAGGGTGCCACGGAGTTGTGGACTTAAAAG-AAAAAAGTGCCACGGAGTTGTGGAC-TTAAAG
844318 AGGAAAAAGGTGCCACGGAGTTGTGGGCTTT
64 AGGAAAAAGGTGCCACGGAGTTGTGGGC-TT
* * ** * * *
844349 AAAAGGGTGCCACTGAGTCGTGGACTTTGAAG-AAAAGGATGCCACTGAGTCGTGGACTT
1 AAAAGGGTGCCACGGAGTTGTGGACTTAAAAGAAAAAAG-TGCCACGGAGTTGTGGACTT
844408 TGAGAAGAGA
Statistics
Matches: 373, Mismatches: 41, Indels: 63
0.78 0.09 0.13
Matches are distributed among these distances:
88 25 0.07
89 3 0.01
92 21 0.06
93 18 0.05
94 99 0.27
95 66 0.18
96 56 0.15
97 6 0.02
103 10 0.03
104 21 0.06
105 26 0.07
106 22 0.06
ACGTcount: A:0.32, C:0.13, G:0.34, T:0.21
Consensus pattern (93 bp):
AAAAGGGTGCCACGGAGTTGTGGACTTAAAAGAAAAAAGTGCCACGGAGTTGTGGACTTAAAGAG
GAAAAAGGTGCCACGGAGTTGTGGGCTT
Found at i:844324 original size:96 final size:94
Alignment explanation
Indices: 844158--844372 Score: 315
Period size: 96 Copynumber: 2.3 Consensus size: 94
844148 AAAAAAGGAA
* * * *
844158 AAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGTGCCACGGAGTGGTGGGCTTTGAGA
1 AAAAGGGTGCCACGGAGTTGT-GGATTTAAAAAAAAAAAGTGCCACGGAGTGGTGGGCTTTGAAA
844223 AGAAAAAGGTTGCCACGGAATTGTGGGCTTT
65 AGAAAAAGG-TGCCACGGAATTGTGGGCTTT
*
844254 AAAAGGGTGCCACGGAGTTGTGGATTTAAAAGAAAAAAAGTGCCACGGAGTTGTGGGCTTT-AAA
1 AAAAGGGTGCCACGGAGTTGTGGATTTAAAA-AAAAAAAGTGCCACGGAGTGGTGGGCTTTGAAA
*
844318 AGGAAAAAGGTGCCACGGAGTTGTGGGCTTT
65 A-GAAAAAGGTGCCACGGAATTGTGGGCTTT
* *
844349 AAAAGGGTGCCACTGAGTCGTGGA
1 AAAAGGGTGCCACGGAGTTGTGGA
844373 CTTTGAAGAA
Statistics
Matches: 109, Mismatches: 8, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
95 54 0.50
96 55 0.50
ACGTcount: A:0.32, C:0.13, G:0.34, T:0.21
Consensus pattern (94 bp):
AAAAGGGTGCCACGGAGTTGTGGATTTAAAAAAAAAAAGTGCCACGGAGTGGTGGGCTTTGAAAA
GAAAAAGGTGCCACGGAATTGTGGGCTTT
Found at i:844392 original size:32 final size:32
Alignment explanation
Indices: 844349--844441 Score: 136
Period size: 32 Copynumber: 2.9 Consensus size: 32
844339 TGTGGGCTTT
*
844349 AAAAGGGTGCCACTGAGTCGTGGACTTTGAAG
1 AAAAGGATGCCACTGAGTCGTGGACTTTGAAG
844381 AAAAGGATGCCACTGAGTCGTGGACTTTG-AG
1 AAAAGGATGCCACTGAGTCGTGGACTTTGAAG
* *
844412 AAGA-GATTGCCACTGAGTCGTGGGCTTTGA
1 AAAAGGA-TGCCACTGAGTCGTGGACTTTGA
844442 GAAGAGATTT
Statistics
Matches: 56, Mismatches: 3, Indels: 4
0.89 0.05 0.06
Matches are distributed among these distances:
30 2 0.04
31 26 0.46
32 28 0.50
ACGTcount: A:0.27, C:0.16, G:0.33, T:0.24
Consensus pattern (32 bp):
AAAAGGATGCCACTGAGTCGTGGACTTTGAAG
Found at i:844426 original size:31 final size:31
Alignment explanation
Indices: 844356--844450 Score: 147
Period size: 31 Copynumber: 3.0 Consensus size: 31
844346 TTTAAAAGGG
*
844356 TGCCACTGAGTCGTGGACTTTGAAGAAAAGGA-
1 TGCCACTGAGTCGTGGACTTTG-AGAAGA-GAT
844388 TGCCACTGAGTCGTGGACTTTGAGAAGAGAT
1 TGCCACTGAGTCGTGGACTTTGAGAAGAGAT
*
844419 TGCCACTGAGTCGTGGGCTTTGAGAAGAGAT
1 TGCCACTGAGTCGTGGACTTTGAGAAGAGAT
844450 T
1 T
844451 TGAAGAATTG
Statistics
Matches: 60, Mismatches: 2, Indels: 3
0.92 0.03 0.05
Matches are distributed among these distances:
30 2 0.03
31 36 0.60
32 22 0.37
ACGTcount: A:0.26, C:0.16, G:0.33, T:0.25
Consensus pattern (31 bp):
TGCCACTGAGTCGTGGACTTTGAGAAGAGAT
Found at i:845409 original size:16 final size:16
Alignment explanation
Indices: 845385--845416 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
845375 GTTTTTCCTT
*
845385 TTTTTTTTCTTTTTTG
1 TTTTGTTTCTTTTTTG
845401 TTTTGTTTCTTTTTTG
1 TTTTGTTTCTTTTTTG
845417 GAAAAGAACA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.00, C:0.06, G:0.09, T:0.84
Consensus pattern (16 bp):
TTTTGTTTCTTTTTTG
Found at i:849135 original size:13 final size:13
Alignment explanation
Indices: 849117--849142 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
849107 ACATATTGCT
849117 TTGTATCGATACA
1 TTGTATCGATACA
849130 TTGTATCGATACA
1 TTGTATCGATACA
849143 CCTTGAAAAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:850175 original size:20 final size:22
Alignment explanation
Indices: 850149--850203 Score: 62
Period size: 20 Copynumber: 2.6 Consensus size: 22
850139 TATGCAACGA
850149 TTGTATCGATACAATTG-CAAG
1 TTGTATCGATACAATTGTCAAG
* **
850170 -TGTATCAATAC-ATTGTTTAG
1 TTGTATCGATACAATTGTCAAG
850190 TTGTATCGATACAA
1 TTGTATCGATACAA
850204 ATTAAAGTTT
Statistics
Matches: 27, Mismatches: 4, Indels: 5
0.75 0.11 0.14
Matches are distributed among these distances:
19 4 0.15
20 12 0.44
21 10 0.37
22 1 0.04
ACGTcount: A:0.33, C:0.13, G:0.16, T:0.38
Consensus pattern (22 bp):
TTGTATCGATACAATTGTCAAG
Found at i:850379 original size:16 final size:16
Alignment explanation
Indices: 850358--850469 Score: 88
Period size: 16 Copynumber: 7.0 Consensus size: 16
850348 TTTGGGTTAT
850358 TTTCGGGTTCGAGTCA
1 TTTCGGGTTCGAGTCA
*
850374 TTTCGGGTT-TAGGTCA
1 TTTCGGGTTCGA-GTCA
* *
850390 CTTT-GGATTCGGGTCA
1 -TTTCGGGTTCGAGTCA
*
850406 TTTCGGGTTCGGGTCA
1 TTTCGGGTTCGAGTCA
* * *
850422 TTTCAGGTTCAAGTTGA
1 TTTCGGGTTCGAG-TCA
850439 -TTCGGGTTC-AGGTCA
1 TTTCGGGTTCGA-GTCA
*
850454 TTTCGGGTTCGGGTCA
1 TTTCGGGTTCGAGTCA
850470 ATTGAGTTTA
Statistics
Matches: 76, Mismatches: 12, Indels: 16
0.73 0.12 0.15
Matches are distributed among these distances:
15 7 0.09
16 64 0.84
17 5 0.07
ACGTcount: A:0.12, C:0.17, G:0.32, T:0.38
Consensus pattern (16 bp):
TTTCGGGTTCGAGTCA
Found at i:851810 original size:21 final size:20
Alignment explanation
Indices: 851780--851822 Score: 68
Period size: 21 Copynumber: 2.1 Consensus size: 20
851770 TCCAAATTTG
*
851780 TAGTTTTATTTTGTTTTCAT
1 TAGTTTTATTTTATTTTCAT
851800 TAGTTATTATTTTATTTTCAT
1 TAGTT-TTATTTTATTTTCAT
851821 TA
1 TA
851823 TCATTAAAGT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
20 5 0.24
21 16 0.76
ACGTcount: A:0.21, C:0.05, G:0.07, T:0.67
Consensus pattern (20 bp):
TAGTTTTATTTTATTTTCAT
Found at i:852593 original size:19 final size:19
Alignment explanation
Indices: 852569--852629 Score: 64
Period size: 19 Copynumber: 3.5 Consensus size: 19
852559 CGATACAATA
852569 TATCGATACATAAGTGTTT
1 TATCGATACATAAGTGTTT
852588 TATCGATAC--AA-TG---
1 TATCGATACATAAGTGTTT
852601 TATCGATACATAAGT-TTT
1 TATCGATACATAAGTGTTT
852619 GTATCGATACA
1 -TATCGATACA
852630 ATGTAAGCTA
Statistics
Matches: 35, Mismatches: 0, Indels: 14
0.71 0.00 0.29
Matches are distributed among these distances:
13 9 0.26
15 2 0.06
16 3 0.09
17 2 0.06
19 19 0.54
ACGTcount: A:0.34, C:0.13, G:0.15, T:0.38
Consensus pattern (19 bp):
TATCGATACATAAGTGTTT
Found at i:852606 original size:13 final size:13
Alignment explanation
Indices: 852554--852610 Score: 51
Period size: 13 Copynumber: 3.9 Consensus size: 13
852544 CATAAAGTGT
852554 TGTATCGATACAA
1 TGTATCGATACAA
*
852567 TATATCGATACATAA
1 TGTATCGATAC--AA
852582 GTGTTTTATCGATACAA
1 -TG---TATCGATACAA
852599 TGTATCGATACA
1 TGTATCGATACA
852611 TAAGTTTTGT
Statistics
Matches: 36, Mismatches: 2, Indels: 12
0.72 0.04 0.24
Matches are distributed among these distances:
13 20 0.56
15 2 0.06
16 3 0.08
17 2 0.06
19 9 0.25
ACGTcount: A:0.37, C:0.14, G:0.14, T:0.35
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:852632 original size:32 final size:32
Alignment explanation
Indices: 852534--852634 Score: 159
Period size: 32 Copynumber: 3.1 Consensus size: 32
852524 TTCAACGATT
*
852534 TGTATCGATACATAAAGTGTTGTATCGATACAA
1 TGTATCGATACAT-AAGTTTTGTATCGATACAA
*
852567 TATATCGATACATAAGTGTTT-TATCGATACAA
1 TGTATCGATACATAAGT-TTTGTATCGATACAA
852599 TGTATCGATACATAAGTTTTGTATCGATACAA
1 TGTATCGATACATAAGTTTTGTATCGATACAA
852631 TGTA
1 TGTA
852635 AGCTACTGCC
Statistics
Matches: 63, Mismatches: 3, Indels: 5
0.89 0.04 0.07
Matches are distributed among these distances:
31 3 0.05
32 46 0.73
33 14 0.22
ACGTcount: A:0.36, C:0.12, G:0.16, T:0.37
Consensus pattern (32 bp):
TGTATCGATACATAAGTTTTGTATCGATACAA
Found at i:852690 original size:13 final size:13
Alignment explanation
Indices: 852672--852696 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
852662 ATTACTCAAA
852672 TGTATCGATACAT
1 TGTATCGATACAT
852685 TGTATCGATACA
1 TGTATCGATACA
852697 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:852748 original size:52 final size:52
Alignment explanation
Indices: 852705--852833 Score: 233
Period size: 52 Copynumber: 2.5 Consensus size: 52
852695 CACTGATCTT
852705 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
*
852757 TGTAAT-GATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATGAAA
1 TGT-ATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
852809 TGTATCGATACATGCAGGCAAATTT
1 TGTATCGATACATGCAGGCAAATTT
852834 TCATATTTCG
Statistics
Matches: 74, Mismatches: 1, Indels: 4
0.94 0.01 0.05
Matches are distributed among these distances:
51 2 0.03
52 70 0.95
53 2 0.03
ACGTcount: A:0.36, C:0.18, G:0.19, T:0.28
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
Found at i:861172 original size:31 final size:31
Alignment explanation
Indices: 861070--861451 Score: 297
Period size: 31 Copynumber: 12.0 Consensus size: 31
861060 AAATACTTTC
*
861070 TCAAAGTCCACGACTCAGTGGCATCTCTTTTCT
1 TCAAAGTCCACGACTCAGTGGCA-CT-TTTTTT
*
861103 TCAAAGTCCACGACTCCGTGGCACCTTTTTATTT
1 TCAAAGTCCACGACTCAGTGGCA-C-TTTT-TTT
* * *
861137 TCAAATTCCACGATTCCGTGGCACTTTTTTT
1 TCAAAGTCCACGACTCAGTGGCACTTTTTTT
* * *
861168 TCAAAGCCCACAACTCCGTGGCACCTTTTTCTT
1 TCAAAGTCCACGACTCAGTGGCA-CTTTTT-TT
* * * *
861201 CTCAAAGCCCATGACTCAGTGGCA-TTTTGTC
1 -TCAAAGTCCACGACTCAGTGGCACTTTTTTT
* * *
861232 TCAAAGTCCACGACTCCGTGGCACCTTCTTT
1 TCAAAGTCCACGACTCAGTGGCACTTTTTTT
* * *
861263 TCAAAGCCCACGACTCAGTGGCAACCTTCTTT
1 TCAAAGTCCACGACTCAGTGGC-ACTTTTTTT
* * *
861295 TCAAAGCCCACGACTCAGTGGCA-TTTTGTC
1 TCAAAGTCCACGACTCAGTGGCACTTTTTTT
* * **
861325 TCAAAGTCTACGACTCAGTGGCAACCTTTTCA
1 TCAAAGTCCACGACTCAGTGGC-ACTTTTTTT
861357 TCAAAGTCCACGACTCCA-TGGCACCTTGTTCCTTT
1 TCAAAGTCCACGACT-CAGTGGCA-CTT-TT--TTT
* * * *
861392 T--AAGTCCACAACTCTGTGGCACCTTCTTT
1 TCAAAGTCCACGACTCAGTGGCACTTTTTTT
* * * *
861421 TCAAAGCCCACAACTCCGTGGCACTCTTTTT
1 TCAAAGTCCACGACTCAGTGGCACTTTTTTT
861452 CCCTTTTAAA
Statistics
Matches: 286, Mismatches: 46, Indels: 36
0.78 0.12 0.10
Matches are distributed among these distances:
29 4 0.01
30 43 0.15
31 73 0.26
32 71 0.25
33 49 0.17
34 44 0.15
35 2 0.01
ACGTcount: A:0.22, C:0.32, G:0.15, T:0.31
Consensus pattern (31 bp):
TCAAAGTCCACGACTCAGTGGCACTTTTTTT
Found at i:861383 original size:93 final size:92
Alignment explanation
Indices: 861066--861383 Score: 329
Period size: 93 Copynumber: 3.3 Consensus size: 92
861056 CTTCAAATAC
* * *
861066 TTTC-TCAAAGTCCACGACTCAGTGGCATCTCTT-TTCTTCAAAGTCCACGACTCCGTGGCACCT
1 TTTCTTCAAAGCCCACGACTCAGTGGCA-C-CTTCTT-TTCAAAGCCCACGACTCAGTGGCA---
* * * * *
861129 TTTTATTTTCAAATTCCACGATTCCGTGGCACTT
60 TTTT-GTCTCAAAGTCCACGACTCCGTGGCACCT
* * * * *
861163 TTTTTTCAAAGCCCACAACTCCGTGGCACCTTTTTCTTCTCAAAGCCCATGACTCAGTGGCATTT
1 TTTCTTCAAAGCCCACGACTCAGTGGCACC---TTCTTTTCAAAGCCCACGACTCAGTGGCATTT
861228 TGTCTCAAAGTCCACGACTCCGTGGCACCT
63 TGTCTCAAAGTCCACGACTCCGTGGCACCT
861258 TCTT-TTCAAAGCCCACGACTCAGTGGCAACCTTCTTTTCAAAGCCCACGACTCAGTGGCATTTT
1 T-TTCTTCAAAGCCCACGACTCAGTGGC-ACCTTCTTTTCAAAGCCCACGACTCAGTGGCATTTT
* *
861322 GTCTCAAAGTCTACGACTCAGTGGCAACCT
64 GTCTCAAAGTCCACGACTCCGTGGC-ACCT
* *
861352 TTTCATCAAAGTCCACGACTCCA-TGGCACCTT
1 TTTCTTCAAAGCCCACGACT-CAGTGGCACCTT
861384 GTTCCTTTTA
Statistics
Matches: 190, Mismatches: 21, Indels: 24
0.81 0.09 0.10
Matches are distributed among these distances:
93 61 0.32
94 23 0.12
95 48 0.25
96 10 0.05
97 4 0.02
98 20 0.11
99 22 0.12
100 2 0.01
ACGTcount: A:0.22, C:0.31, G:0.15, T:0.31
Consensus pattern (92 bp):
TTTCTTCAAAGCCCACGACTCAGTGGCACCTTCTTTTCAAAGCCCACGACTCAGTGGCATTTTGT
CTCAAAGTCCACGACTCCGTGGCACCT
Found at i:861482 original size:100 final size:97
Alignment explanation
Indices: 861359--861562 Score: 320
Period size: 100 Copynumber: 2.1 Consensus size: 97
861349 CCTTTTCATC
* * * *
861359 AAAGTCCACGACTCCATGGCACCTTGTTCCTTTTAAGTCCACAACTCTGTGGCACCTTCTTTTCA
1 AAAGTCCACAACCCCATGGCACCTTGTTCCTTTTAAGCCCACAACTCCGTGGCACC--CTTTT-A
861424 AAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTT
63 AAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTT
* *
861459 AAAGTCCACAACCCCGTGGCACCTTGTTCTTTTTAAGCCCACAACTCCGTGGCACCCTTTTAAAG
1 AAAGTCCACAACCCCATGGCACCTTGTTCCTTTTAAGCCCACAACTCCGTGGCACCCTTTTAAAG
861524 CCCACAACTCCGTGGCACTCTTTTTCCCTTTT
66 CCCACAACTCCGTGGCACTCTTTTTCCCTTTT
861556 -AAGTCCA
1 AAAGTCCA
861563 TAATTCTGTG
Statistics
Matches: 98, Mismatches: 6, Indels: 4
0.91 0.06 0.04
Matches are distributed among these distances:
96 7 0.07
97 36 0.37
98 5 0.05
100 50 0.51
ACGTcount: A:0.21, C:0.35, G:0.13, T:0.31
Consensus pattern (97 bp):
AAAGTCCACAACCCCATGGCACCTTGTTCCTTTTAAGCCCACAACTCCGTGGCACCCTTTTAAAG
CCCACAACTCCGTGGCACTCTTTTTCCCTTTT
Found at i:861501 original size:33 final size:32
Alignment explanation
Indices: 861072--861547 Score: 270
Period size: 31 Copynumber: 14.8 Consensus size: 32
861062 ATACTTTCTC
* * * *
861072 AAAGTCCACGACTCAGTGGCATCTCTTTTC-TTC
1 AAAGCCCACAACTCCGTGGCA-C-CTTTTCTTTT
* * *
861105 AAAGTCCACGACTCCGTGGCACCTTTTTATTTT
1 AAAGCCCACAACTCCGTGGCACC-TTTTCTTTT
** * *
861138 CAAATTCCACGATTCCGTGGCA-CTTTT-TTTT
1 -AAAGCCCACAACTCCGTGGCACCTTTTCTTTT
*
861169 CAAAGCCCACAACTCCGTGGCACCTTTTTCTTCTC
1 -AAAGCCCACAACTCCGTGGCACC-TTTTCTT-TT
** * * * *
861204 AAAGCCCATGACTCAGTGGCA--TTTTGTCTC
1 AAAGCCCACAACTCCGTGGCACCTTTTCTTTT
* *
861234 AAAGTCCACGACTCCGTGGCACC--TTCTTTT
1 AAAGCCCACAACTCCGTGGCACCTTTTCTTTT
* *
861264 CAAAGCCCACGACTCAGTGGCAACC--TTCTTTT
1 -AAAGCCCACAACTCCGTGGC-ACCTTTTCTTTT
* * * * *
861296 CAAAGCCCACGACTCAGTGGCA--TTTTGTCTC
1 -AAAGCCCACAACTCCGTGGCACCTTTTCTTTT
* * * * * *
861327 AAAGTCTACGACTCAGTGGCAACCTTTTC-ATC
1 AAAGCCCACAACTCCGTGGC-ACCTTTTCTTTT
* * *
861359 AAAGTCCACGACTCCATGGCACCTTGTTCCTTTT
1 AAAGCCCACAACTCCGTGGCACCTT-TT-CTTTT
* *
861393 -AAGTCCACAACTCTGTGGCACC--TTCTTTT
1 AAAGCCCACAACTCCGTGGCACCTTTTCTTTT
861422 CAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTT
1 -AAAGCCCACAACTCCGTGGCAC-C-TTTT--CTTTT
* *
861459 AAAGTCCACAACCCCGTGGCACCTTGTTCTTTT
1 AAAGCCCACAACTCCGTGGCACCTT-TTCTTTT
*
861492 TAAGCCCACAACTCCGTGGCACC----CTTTT
1 AAAGCCCACAACTCCGTGGCACCTTTTCTTTT
861520 AAAGCCCACAACTCCGTGGCACTCTTTT
1 AAAGCCCACAACTCCGTGGCAC-CTTTT
861548 TCCCTTTTAA
Statistics
Matches: 364, Mismatches: 46, Indels: 66
0.76 0.10 0.14
Matches are distributed among these distances:
28 26 0.07
29 6 0.02
30 44 0.12
31 76 0.21
32 63 0.17
33 76 0.21
34 42 0.12
35 6 0.02
36 20 0.05
37 5 0.01
ACGTcount: A:0.22, C:0.33, G:0.15, T:0.31
Consensus pattern (32 bp):
AAAGCCCACAACTCCGTGGCACCTTTTCTTTT
Found at i:861513 original size:69 final size:64
Alignment explanation
Indices: 861102--861519 Score: 232
Period size: 65 Copynumber: 6.5 Consensus size: 64
861092 ATCTCTTTTC
* * * * * ** * *
861102 TTCAAAGTCCACGACTCCGTGGCACCTTTTT-ATTTTCAAATTCCACGATTCCGTGGCACTTTTT
1 TTCAAAGCCCACAACTCCGTGGCACCTTTTTCCTTTT--AAGTCCACAACCCCGTGGCACCTTCT
861166 T
64 T
* * ** * *
861167 TTCAAAGCCCACAACTCCGTGGCACCTTTTT-CTTCTCAAAGCCCATGACTCAGTGGCA--TT-T
1 TTCAAAGCCCACAACTCCGTGGCACCTTTTTCCTT-T-TAAGTCCACAACCCCGTGGCACCTTCT
861228 T
64 T
* * * ** * * * *
861229 GTCTCAAAGTCCACGACTCCGTGGCACCTTCTT--TTCAAAGCCCACGACTCAGTGGCAACCTTC
1 -T-TCAAAGCCCACAACTCCGTGGCACCTTTTTCCTTTTAAGTCCACAACCCCGTGGC-ACCTTC
861292 TT
63 TT
* * ** * * * *
861294 TTCAAAGCCCACGACTCAGTGGCA--TTTTGT-C-TCAAAGTCTACGACTCAGTGGCAACCTT-T
1 TTCAAAGCCCACAACTCCGTGGCACCTTTT-TCCTTTTAAGTCCACAACCCCGTGGC-ACCTTCT
861354 T
64 T
* * * * * * *
861355 CATCAAAGTCCACGACTCCATGGCACCTTGTTCCTTTTAAGTCCACAACTCTGTGGCACCTTCTT
1 -TTCAAAGCCCACAACTCCGTGGCACCTTTTTCCTTTTAAGTCCACAACCCCGTGGCACCTTCTT
861420 TTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTAAAGTCCACAACCCCGTGGCACCTTG
1 TTCAAAGCCCACAACTCCGTGGCAC-CTTTTT-CCTTTT-AAGTCCACAACCCCGTGGCACC---
861485 TTCTT
60 TTCTT
* *
861490 TT-TAAGCCCACAACTCCGTGGCACCCTTTT
1 TTCAAAGCCCACAACTCCGTGGCACCTTTTT
861520 AAAGCCCACA
Statistics
Matches: 293, Mismatches: 38, Indels: 41
0.79 0.10 0.11
Matches are distributed among these distances:
61 24 0.08
62 50 0.17
63 27 0.09
64 60 0.20
65 72 0.25
66 7 0.02
67 20 0.07
68 5 0.02
69 21 0.07
70 7 0.02
ACGTcount: A:0.22, C:0.33, G:0.15, T:0.31
Consensus pattern (64 bp):
TTCAAAGCCCACAACTCCGTGGCACCTTTTTCCTTTTAAGTCCACAACCCCGTGGCACCTTCTT
Found at i:861527 original size:28 final size:28
Alignment explanation
Indices: 861452--861547 Score: 111
Period size: 28 Copynumber: 3.2 Consensus size: 28
861442 CACTCTTTTT
* *
861452 CCCTTTTAAAGTCCACAACCCCGTGGCA
1 CCCTTTTAAAGCCCACAACTCCGTGGCA
*
861480 CCTTGTTCTTTTTAAGCCCACAACTCCGTGGCA
1 CC-----CTTTTAAAGCCCACAACTCCGTGGCA
861513 CCCTTTTAAAGCCCACAACTCCGTGGCA
1 CCCTTTTAAAGCCCACAACTCCGTGGCA
*
861541 CTCTTTT
1 CCCTTTT
861548 TCCCTTTTAA
Statistics
Matches: 58, Mismatches: 5, Indels: 10
0.79 0.07 0.14
Matches are distributed among these distances:
28 33 0.57
33 25 0.43
ACGTcount: A:0.21, C:0.36, G:0.14, T:0.29
Consensus pattern (28 bp):
CCCTTTTAAAGCCCACAACTCCGTGGCA
Found at i:861584 original size:63 final size:61
Alignment explanation
Indices: 861452--861596 Score: 193
Period size: 63 Copynumber: 2.4 Consensus size: 61
861442 CACTCTTTTT
* *
861452 CCCTTTTAAAGTCCACAACCCCGTGGCACCTTGTTCTTTTTAAGCCCACAACTCCGTGGCA
1 CCCTTTTAAAGTCCACAACTCCGTGGCACCTTGTTCCTTTTAAGCCCACAACTCCGTGGCA
* * * * * *
861513 CCCTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTAAGTCCATAATTCTGTGGCA
1 CCCTTTTAAAGTCCACAACTCCGTGGCAC-CTTGTT-CCTTTTAAGCCCACAACTCCGTGGCA
861576 CCCTTTT-AAGTCCACAACTCC
1 CCCTTTTAAAGTCCACAACTCC
861597 ATGACATCTT
Statistics
Matches: 73, Mismatches: 9, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
61 27 0.37
62 18 0.25
63 28 0.38
ACGTcount: A:0.21, C:0.35, G:0.12, T:0.31
Consensus pattern (61 bp):
CCCTTTTAAAGTCCACAACTCCGTGGCACCTTGTTCCTTTTAAGCCCACAACTCCGTGGCA
Found at i:861725 original size:32 final size:33
Alignment explanation
Indices: 861612--861868 Score: 360
Period size: 33 Copynumber: 7.9 Consensus size: 33
861602 ATCTTTCTCT
*
861612 TTTTCTAAAGCCCACACAAGTCGGTGGCAACCA
1 TTTTCTAAAGCCCACACAAGTCGGTGGCAACCC
* * *
861645 TTCTCTAAAGCCCACACAAGTTGGTGGCAACCT
1 TTTTCTAAAGCCCACACAAGTCGGTGGCAACCC
* *
861678 TTTTCTAAAGCCCACAAAAGTCGGTGGTAACCC
1 TTTTCTAAAGCCCACACAAGTCGGTGGCAACCC
861711 TTTTC-AAAGCCCACACAAGTCGGTGGCAACCC
1 TTTTCTAAAGCCCACACAAGTCGGTGGCAACCC
*
861743 TTTTC-AAAGCCCACACAAGTCAGTGGCAACCC
1 TTTTCTAAAGCCCACACAAGTCGGTGGCAACCC
* * *
861775 TTCTC-AAAGCCCACACAAGTTGGTGGCAACCT
1 TTTTCTAAAGCCCACACAAGTCGGTGGCAACCC
*
861807 TTTTCTAAAGCCCACACAAGTCGGTGG-AAACC
1 TTTTCTAAAGCCCACACAAGTCGGTGGCAACCC
* *
861839 TTCTTCAAAAGCCCACACAAGTTGGTGGCA
1 TT-TTCTAAAGCCCACACAAGTCGGTGGCA
861869 TCTTCCTTTA
Statistics
Matches: 200, Mismatches: 21, Indels: 5
0.88 0.09 0.02
Matches are distributed among these distances:
32 93 0.47
33 106 0.53
34 1 0.00
ACGTcount: A:0.30, C:0.30, G:0.18, T:0.22
Consensus pattern (33 bp):
TTTTCTAAAGCCCACACAAGTCGGTGGCAACCC
Found at i:861988 original size:43 final size:43
Alignment explanation
Indices: 861873--862196 Score: 342
Period size: 43 Copynumber: 7.1 Consensus size: 43
861863 GTGGCATCTT
*
861873 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGACA
1 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
* *
861916 CCTTTATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA
1 -C-----CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
* * *
861965 CCTTTAAGTCCAATATCGTTGGCCTTGAATCAGCATATTAGCA
1 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
* * *
862008 CCTTCATCTTTAAGTCCAATGTAGCTGGCCTTCAATCAGCACATTGGCA
1 ----C--CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
* * *
862057 CCTTTAAGTCTAATATCGCTAGCCTTGAATCAGCATATTGGCA
1 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
* * * *
862100 TCTTCTTCTTTAAGTCCAATGTAGCTGGCCTTGAATCATCACATTGGAA
1 ----C--CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
862149 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
1 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
862192 CCTTT
1 CCTTT
862197 TCCATCTTTA
Statistics
Matches: 232, Mismatches: 31, Indels: 35
0.78 0.10 0.12
Matches are distributed among these distances:
43 116 0.50
44 1 0.00
45 2 0.01
47 2 0.01
48 1 0.00
49 110 0.47
ACGTcount: A:0.26, C:0.24, G:0.17, T:0.33
Consensus pattern (43 bp):
CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
Found at i:862030 original size:92 final size:92
Alignment explanation
Indices: 861873--862249 Score: 574
Period size: 92 Copynumber: 4.1 Consensus size: 92
861863 GTGGCATCTT
* *
861873 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGACACCTTTATCTTTAAGTCCAATGT
1 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGT
861938 AGCTGGCCTTGAATCAGCACATTGGCA
66 AGCTGGCCTTGAATCAGCACATTGGCA
* * *
861965 CCTTTAAGTCCAATATCGTTGGCCTTGAATCAGCATATTAGCACCTTCATCTTTAAGTCCAATGT
1 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGT
*
862030 AGCTGGCCTTCAATCAGCACATTGGCA
66 AGCTGGCCTTGAATCAGCACATTGGCA
* * * * *
862057 CCTTTAAGTCTAATATCGCTAGCCTTGAATCAGCATATTGGCATCTTCTTCTTTAAGTCCAATGT
1 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGT
* *
862122 AGCTGGCCTTGAATCATCACATTGGAA
66 AGCTGGCCTTGAATCAGCACATTGGCA
*
862149 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTTCAA
1 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACC--TT-CATCTTTAAGTCCAA
* *
862214 TGTAGCTGGCCTTAAATCAGCACATTGACA
63 TGTAGCTGGCCTTGAATCAGCACATTGGCA
862244 TCCTTT
1 -CCTTT
862250 TTCTCATCTT
Statistics
Matches: 256, Mismatches: 25, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
92 210 0.82
94 2 0.01
95 39 0.15
96 5 0.02
ACGTcount: A:0.26, C:0.24, G:0.16, T:0.33
Consensus pattern (92 bp):
CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGT
AGCTGGCCTTGAATCAGCACATTGGCA
Found at i:862232 original size:52 final size:55
Alignment explanation
Indices: 862150--862271 Score: 160
Period size: 52 Copynumber: 2.3 Consensus size: 55
862140 ACATTGGAAC
* * *
862150 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-CC-TTTTC-CAT
1 CTTTAAGTCCAATATAGCTGGCCTTAAATCAGCACATTGACATCCTTTTTCTCAT
* *
862202 CTTTAAGTTCAATGTAGCTGGCCTTAAATCAGCACATTGACATCCTTTTTCTCAT
1 CTTTAAGTCCAATATAGCTGGCCTTAAATCAGCACATTGACATCCTTTTTCTCAT
**
862257 CTTTAAACCCAATAT
1 CTTTAAGTCCAATAT
862272 CGTTGGTCGT
Statistics
Matches: 58, Mismatches: 9, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
52 37 0.64
53 2 0.03
54 5 0.09
55 14 0.24
ACGTcount: A:0.27, C:0.25, G:0.12, T:0.36
Consensus pattern (55 bp):
CTTTAAGTCCAATATAGCTGGCCTTAAATCAGCACATTGACATCCTTTTTCTCAT
Found at i:862425 original size:120 final size:120
Alignment explanation
Indices: 862253--862474 Score: 315
Period size: 120 Copynumber: 1.9 Consensus size: 120
862243 ATCCTTTTTC
* *
862253 TCATCTTTAAACCCAATATCGTTGGTCGTGAATCAACATATTGGCATCTTTATCACTTTTC-TCA
1 TCATCTTTAAACCCAATATCGTTGGCCGTGAATCAACATATTGGCATCTTTATCACTCTTCATC-
* **
862317 C-CTTCATCCTTAAGTCCAATATTGCTGGCCTTGAATCAGTATATTGGTATCTTCA
65 CTCATCATCCTTAAGTCCAATATTGCAAGCCTTGAATCAGTATATTGGTATCTTCA
* *
862372 TCATCTTTAAAACCCAATATCGTTGGCCGTGAATCAACGTATTGGTCCT-TTTATCACTCTTCAT
1 TCATCTTT-AAACCCAATATCGTTGGCCGTGAATCAACATATTGG-CATCTTTATCACTCTTCAT
* *
862436 CCTCATCATCTTTAAGTCCAATGTTGCAAGCCTTGAATC
64 CCTCATCATCCTTAAGTCCAATATTGCAAGCCTTGAATC
862475 TGCACAGTGG
Statistics
Matches: 90, Mismatches: 9, Indels: 6
0.86 0.09 0.06
Matches are distributed among these distances:
119 8 0.09
120 47 0.52
121 35 0.39
ACGTcount: A:0.25, C:0.25, G:0.13, T:0.37
Consensus pattern (120 bp):
TCATCTTTAAACCCAATATCGTTGGCCGTGAATCAACATATTGGCATCTTTATCACTCTTCATCC
TCATCATCCTTAAGTCCAATATTGCAAGCCTTGAATCAGTATATTGGTATCTTCA
Found at i:863139 original size:32 final size:33
Alignment explanation
Indices: 863077--863145 Score: 113
Period size: 32 Copynumber: 2.1 Consensus size: 33
863067 TTCAACGATT
*
863077 TGTATCGATACATAAAGTGTTGTATTGATACAA
1 TGTATCGATACATAAAGTGTTGTATCGATACAA
*
863110 TGTATCGATACAT-AAGTTTTGTATCGATACAA
1 TGTATCGATACATAAAGTGTTGTATCGATACAA
863142 TGTA
1 TGTA
863146 AGCTACTGCC
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
32 21 0.62
33 13 0.38
ACGTcount: A:0.35, C:0.10, G:0.17, T:0.38
Consensus pattern (33 bp):
TGTATCGATACATAAAGTGTTGTATCGATACAA
Found at i:863201 original size:13 final size:13
Alignment explanation
Indices: 863183--863207 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
863173 ATTACTCAAA
863183 TGTATCGATACAT
1 TGTATCGATACAT
863196 TGTATCGATACA
1 TGTATCGATACA
863208 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:863260 original size:52 final size:50
Alignment explanation
Indices: 863196--863344 Score: 208
Period size: 52 Copynumber: 2.9 Consensus size: 50
863186 ATCGATACAT
* *
863196 TGTATCGATACACTGATCTTTGTATCGATACATGCAGGCAAATTTGCTCAGA
1 TGTATCGATACACT-AT-TATGTATCGATACATGCAGGCAAATTTGCCCAGA
*
863248 TGTATCGATACACTATAAAATGTATCGATACATGCAGGCAAATTTGCCCAGA
1 TGTATCGATACACTAT--TATGTATCGATACATGCAGGCAAATTTGCCCAGA
*
863300 TGTATCGATACACTATTAAATGTATCGATACATGTAGGCAAATTT
1 TGTATCGATACACTATT--ATGTATCGATACATGCAGGCAAATTT
863345 TCATATTTCG
Statistics
Matches: 88, Mismatches: 6, Indels: 6
0.88 0.06 0.06
Matches are distributed among these distances:
51 2 0.02
52 86 0.98
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.32
Consensus pattern (50 bp):
TGTATCGATACACTATTATGTATCGATACATGCAGGCAAATTTGCCCAGA
Found at i:870650 original size:32 final size:33
Alignment explanation
Indices: 870576--870671 Score: 101
Period size: 32 Copynumber: 3.0 Consensus size: 33
870566 CGGGTTAATT
* * * *
870576 ATTCAGGTCATTTCAAGTTCGGGTTATTT-GGG
1 ATTCAGGTCATTTTAGGTTCAGGTCATTTCGGG
870608 ATTC-GAGTCATTTTAGGTTCAGGTCATTTCGGG
1 ATTCAG-GTCATTTTAGGTTCAGGTCATTTCGGG
*
870641 -TTCAGGTCATTTTAGGTT-TGAGTCATTTCGG
1 ATTCAGGTCATTTTAGGTTCAG-GTCATTTCGG
870672 ATTTGAGTTA
Statistics
Matches: 55, Mismatches: 5, Indels: 8
0.81 0.07 0.12
Matches are distributed among these distances:
31 2 0.04
32 49 0.89
33 4 0.07
ACGTcount: A:0.18, C:0.14, G:0.27, T:0.42
Consensus pattern (33 bp):
ATTCAGGTCATTTTAGGTTCAGGTCATTTCGGG
Found at i:870664 original size:48 final size:48
Alignment explanation
Indices: 870577--870668 Score: 114
Period size: 48 Copynumber: 1.9 Consensus size: 48
870567 GGGTTAATTA
* * *
870577 TTCAGGTCATTTCAAGTTCGGGTTATTTGGGATTCGAGTCATTTTAGG
1 TTCAGGTCATTTCAAGTTCAGGTCATTTAGGATTCGAGTCATTTTAGG
** *
870625 TTCAGGTCATTTCGGGTTCAGGTCATTTTAGG-TTTGAGTCATTT
1 TTCAGGTCATTTCAAGTTCAGGTCA-TTTAGGATTCGAGTCATTT
870669 CGGATTTGAG
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
48 32 0.86
49 5 0.14
ACGTcount: A:0.17, C:0.13, G:0.26, T:0.43
Consensus pattern (48 bp):
TTCAGGTCATTTCAAGTTCAGGTCATTTAGGATTCGAGTCATTTTAGG
Found at i:870698 original size:32 final size:30
Alignment explanation
Indices: 870662--870765 Score: 109
Period size: 32 Copynumber: 3.2 Consensus size: 30
870652 TTAGGTTTGA
*
870662 GTCATTTCGGATTTGAGTTATTTCAGATTCGG
1 GTCATTT-GGATTTGGGTTATTTC-GATTCGG
*
870694 GTCATTATGGATTTGGGTTATTTCGGGTTCGG
1 GTCATT-TGGATTTGGGTTATTTC-GATTCGG
* *
870726 GTCATTTTTGGATTCGGGTCATTTCGAGTTCGG
1 GTCA--TTTGGATTTGGGTTATTTCGA-TTCGG
870759 GTCATTT
1 GTCATTT
870766 TCAGGTTCGA
Statistics
Matches: 62, Mismatches: 6, Indels: 9
0.81 0.08 0.12
Matches are distributed among these distances:
31 3 0.05
32 32 0.52
33 25 0.40
34 2 0.03
ACGTcount: A:0.14, C:0.12, G:0.29, T:0.44
Consensus pattern (30 bp):
GTCATTTGGATTTGGGTTATTTCGATTCGG
Found at i:870759 original size:16 final size:16
Alignment explanation
Indices: 870581--870765 Score: 78
Period size: 16 Copynumber: 11.5 Consensus size: 16
870571 TAATTATTCA
*
870581 GGTCATTTCAAGTTCG
1 GGTCATTTCGAGTTCG
* *
870597 GGTTATTT-GGGATTCG
1 GGTCATTTCGAG-TTCG
* * *
870613 AGTCATTT-TAGGTTCA
1 GGTCATTTCGA-GTTCG
* *
870629 GGTCATTTCGGGTTCA
1 GGTCATTTCGAGTTCG
* *
870645 GGTCATTT-TAGGTTTG
1 GGTCATTTCGA-GTTCG
* *
870661 AGTCATTTCG-GATTTG
1 GGTCATTTCGAG-TTCG
* *
870677 AGTTATTTC-AGATTCG
1 GGTCATTTCGAG-TTCG
* *
870693 GGTCATTATGGA-TTTG
1 GGTCATT-TCGAGTTCG
* *
870709 GGTTATTTCGGGTTCG
1 GGTCATTTCGAGTTCG
*
870725 GGTCATTTTTG-GATTCG
1 GGTCA-TTTCGAG-TTCG
870742 GGTCATTTCGAGTTCG
1 GGTCATTTCGAGTTCG
870758 GGTCATTT
1 GGTCATTT
870766 TCAGGTTCGA
Statistics
Matches: 126, Mismatches: 30, Indels: 26
0.69 0.16 0.14
Matches are distributed among these distances:
15 4 0.03
16 105 0.83
17 16 0.13
18 1 0.01
ACGTcount: A:0.16, C:0.12, G:0.29, T:0.43
Consensus pattern (16 bp):
GGTCATTTCGAGTTCG
Found at i:870767 original size:17 final size:16
Alignment explanation
Indices: 870609--870774 Score: 83
Period size: 16 Copynumber: 10.2 Consensus size: 16
870599 TTATTTGGGA
* *
870609 TTCGAGTCATTTTAGG
1 TTCGGGTCATTTTCGG
*
870625 TTCAGGTCA-TTTCGGG
1 TTCGGGTCATTTTC-GG
* *
870641 TTCAGGTCATTTTAGG
1 TTCGGGTCATTTTCGG
* *
870657 TTTGAGTCA-TTTCGG
1 TTCGGGTCATTTTCGG
* * * *
870672 ATTTGAGTTA-TTTCAGA
1 -TTCGGGTCATTTTC-GG
*
870689 TTCGGGTCATTAT-GG
1 TTCGGGTCATTTTCGG
* *
870704 ATTTGGGTTA-TTTCGGG
1 -TTCGGGTCATTTTC-GG
*
870721 TTCGGGTCATTTTTGG
1 TTCGGGTCATTTTCGG
870737 ATTCGGGTCA-TTTCGAG
1 -TTCGGGTCATTTTCG-G
870754 TTCGGGTCATTTTCAGG
1 TTCGGGTCATTTTC-GG
870771 TTCG
1 TTCG
870775 AATTAGTCGA
Statistics
Matches: 115, Mismatches: 22, Indels: 25
0.71 0.14 0.15
Matches are distributed among these distances:
15 11 0.10
16 73 0.63
17 30 0.26
18 1 0.01
ACGTcount: A:0.15, C:0.13, G:0.28, T:0.43
Consensus pattern (16 bp):
TTCGGGTCATTTTCGG
Found at i:875542 original size:20 final size:21
Alignment explanation
Indices: 875502--875555 Score: 83
Period size: 20 Copynumber: 2.6 Consensus size: 21
875492 TTCTATAATT
*
875502 TGTATTGATACAAACAGTGAA
1 TGTATTGATACATACAGTGAA
875523 TGTATTGATACATA-AGTGAA
1 TGTATTGATACATACAGTGAA
*
875543 TGTATCGATACAT
1 TGTATTGATACAT
875556 GTCTGAAATG
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
20 18 0.58
21 13 0.42
ACGTcount: A:0.39, C:0.09, G:0.19, T:0.33
Consensus pattern (21 bp):
TGTATTGATACATACAGTGAA
Found at i:875562 original size:20 final size:20
Alignment explanation
Indices: 875519--875575 Score: 60
Period size: 20 Copynumber: 2.8 Consensus size: 20
875509 ATACAAACAG
* *
875519 TGAATGTATTGATACATAAG
1 TGAATGTATCGATACATAAC
**
875539 TGAATGTATCGATACATGTC
1 TGAATGTATCGATACATAAC
*
875559 TGAAATGTATCAATACA
1 TG-AATGTATCGATACA
875576 GAACCATGTC
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
20 18 0.58
21 13 0.42
ACGTcount: A:0.39, C:0.11, G:0.18, T:0.33
Consensus pattern (20 bp):
TGAATGTATCGATACATAAC
Found at i:878967 original size:13 final size:13
Alignment explanation
Indices: 878949--878976 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
878939 GATACAGTGA
878949 AATGTATCGATAC
1 AATGTATCGATAC
878962 AATGTATCGATAC
1 AATGTATCGATAC
878975 AA
1 AA
878977 AGCATAATGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.43, C:0.14, G:0.14, T:0.29
Consensus pattern (13 bp):
AATGTATCGATAC
Found at i:879637 original size:159 final size:155
Alignment explanation
Indices: 879341--879845 Score: 471
Period size: 159 Copynumber: 3.2 Consensus size: 155
879331 TACCATTGGA
* * * *
879341 GATACTCCAACCCTATTTTTACTTCCAAAATATCGATTTTTCACTATTGGGGATACTCCAACCCC
1 GATACTCCAACCCTATTTTTATTTCCAAAATATCGATTTTTCACCATTAGGGATACTCCAACCCT
* * * * * * * *
879406 ATAATTTTTAAGGAGATAATCCAACCCCATTTTTACTTTCAAAATA-TCAATTTTTCACCATTGA
66 ATAATTTTTGAGG-GATAATCCAA-CCCTTTTTTA-TCTCAAAATATTAAAATTTTCATC-TCGG
* * *
879470 AAATACTCCAACTCTATAATTTTTTAGGG
127 GAATACTCCAACTCTATTATTTTTGAGGG
* ** * *
879499 GATATTTTAACCCTATTTTTATTTTCAAAATATCGATTTTTTCACCATTTGGGATACTCCAACCC
1 GATACTCCAACCCTATTTTTATTTCCAAAATATCGA-TTTTTCACCATTAGGGATACTCCAACCC
* * * *
879564 TATCATTTCTGAGAGGATATTCCAACTCTGTTTTTATCTCCAAAATATTAAAATTTTCATCTCGG
65 TATAATTTTTGAG-GGATAATCCAACCCT-TTTTTATCT-CAAAATATTAAAATTTTCATCTCGG
* *
879629 GAATACTCCAACCCCATTATTTTTGAGGG
127 GAATACTCCAACTCTATTATTTTTGAGGG
* ** * * * * *
879658 GATACTCCAATCCC-CTTTTTATTTCCAAAATATTAAAATTTTCATC-TCAAGGATACTTCAACC
1 GATACTCCAA-CCCTATTTTTATTTCCAAAATA-TCGATTTTTCACCATTAGGGATACTCCAACC
* * * *
879721 CTGTTATTTTTGAGGGGATACTCTAACCCCTTTTTT-TCT-AAAATATTAAAATTTTCATCTCGG
64 CTATAATTTTTGA-GGGATAATCCAA-CCCTTTTTTATCTCAAAATATTAAAATTTTCATCTCGG
* * * *
879784 GGATACTCTAACTCTGTTATTTTTGAGAG
127 GAATACTCCAACTCTATTATTTTTGAGGG
* *
879813 GATACCCCAACCCTATTTTTATTTTCAAAATAT
1 GATACTCCAACCCTATTTTTATTTCCAAAATAT
879846 TAAAATTTTT
Statistics
Matches: 284, Mismatches: 53, Indels: 24
0.79 0.15 0.07
Matches are distributed among these distances:
154 4 0.01
155 72 0.25
157 3 0.01
158 72 0.25
159 117 0.41
160 16 0.06
ACGTcount: A:0.30, C:0.21, G:0.10, T:0.39
Consensus pattern (155 bp):
GATACTCCAACCCTATTTTTATTTCCAAAATATCGATTTTTCACCATTAGGGATACTCCAACCCT
ATAATTTTTGAGGGATAATCCAACCCTTTTTTATCTCAAAATATTAAAATTTTCATCTCGGGAAT
ACTCCAACTCTATTATTTTTGAGGG
Found at i:879691 original size:79 final size:77
Alignment explanation
Indices: 879341--879903 Score: 418
Period size: 79 Copynumber: 7.2 Consensus size: 77
879331 TACCATTGGA
* ** * * *
879341 GATACTCCAACCCTATTTTTACTTCCAAAATA-TCGATTTTTCACTATTGGGGATACTCCAACCC
1 GATACTCCAACCC-ATTTTTATTTCCAAAATATTAAAATTTTCA-T-CTCGGGATACTCCAACCC
* * * *
879405 CATAATTTTTAAGGA
63 TATTATTTTTGAGGG
* * * * * ** *
879420 GATAATCCAACCCCATTTTTACTTT-CAAAATA-TCAATTTTTCACCATTGAAAATACTCCAACT
1 GATACTCCAA-CCCATTTTTA-TTTCCAAAATATTAAAATTTTCATC-TCG-GGATACTCCAACC
* *
879483 CTATAATTTTTTAGGG
62 CTATTATTTTTGAGGG
* ** * ** ** * *
879499 GATATTTTAACCCTATTTTTATTTTCAAAATATCGATTTTTTCACCATTTGGGATACTCCAACCC
1 GATACTCCAACCC-ATTTTTATTTCCAAAATATTAAAATTTTCATC--TCGGGATACTCCAACCC
* * *
879564 TATCATTTCTGAGAG
63 TATTATTTTTGAGGG
* ** * *
879579 GATATTCCAACTCTGTTTTTATCTCCAAAATATTAAAATTTTCATCTCGGGAATACTCCAACCCC
1 GATACTCCAAC-CCATTTTTATTTCCAAAATATTAAAATTTTCATCTCGGG-ATACTCCAACCCT
879644 ATTATTTTTGAGGG
64 ATTATTTTTGAGGG
* * *
879658 GATACTCCAATCCCCTTTTTATTTCCAAAATATTAAAATTTTCATCTCAAGGATACTTCAACCCT
1 GATACTCCAA-CCCATTTTTATTTCCAAAATATTAAAATTTTCATCTC-GGGATACTCCAACCCT
*
879723 GTTATTTTTGAGGG
64 ATTATTTTTGAGGG
* * * * * *
879737 GATACTCTAACCC-CTTTT-TTTCTAAAATATTAAAATTTTCATCTCGGGGATACTCTAACTCTG
1 GATACTCCAACCCATTTTTATTTCCAAAATATTAAAATTTTCATCTC-GGGATACTCCAACCCTA
*
879800 TTATTTTTGAGAG
65 TTATTTTTGAGGG
* * *
879813 GATACCCCAACCCTATTTTTATTTTCAAAATATTAAAATTTTTATCTCTGGGATACTCCAA-CCT
1 GATACTCCAACCC-ATTTTTATTTCCAAAATATTAAAATTTTCATCTC-GGGATACTCCAACCCT
* ***
879877 CGTTATTTCCAAGGG
64 -ATTATTTTTGAGGG
879892 GATACTCCAACC
1 GATACTCCAACC
879904 TCGTTATTTC
Statistics
Matches: 395, Mismatches: 73, Indels: 32
0.79 0.15 0.06
Matches are distributed among these distances:
76 62 0.16
77 4 0.01
78 21 0.05
79 231 0.58
80 73 0.18
81 4 0.01
ACGTcount: A:0.30, C:0.22, G:0.10, T:0.39
Consensus pattern (77 bp):
GATACTCCAACCCATTTTTATTTCCAAAATATTAAAATTTTCATCTCGGGATACTCCAACCCTAT
TATTTTTGAGGG
Found at i:879810 original size:155 final size:155
Alignment explanation
Indices: 879605--879903 Score: 413
Period size: 155 Copynumber: 1.9 Consensus size: 155
879595 TTTTATCTCC
* *
879605 AAAATATTAAAATTTTCATCTCGGGAATACTCCAACCCCATTATTTTTGAGGGGATACTCCAATC
1 AAAATATTAAAATTTTCATCTCGGGAATACTCCAACCCCATTATTTTTGAGAGGATACCCCAA-C
* * ***
879670 CC-CTTTTTATTTCCAAAATATTAAAATTTTCATCTCAAGGATACTTCAACC-CTGTTATTTTTG
65 CCTATTTTTATTTCCAAAATATTAAAATTTTCATCTCAAGGATACTCCAACCTC-GTTATTTCCA
*
879733 AGGGGATACTCTAACCCCTTTTTTTCT
129 AGGGGATACTCCAACCCCTTTTTTTCT
* * * **
879760 AAAATATTAAAATTTTCATCTCGGGGATACTCTAACTCTGTTATTTTTGAGAGGATACCCCAACC
1 AAAATATTAAAATTTTCATCTCGGGAATACTCCAACCCCATTATTTTTGAGAGGATACCCCAACC
* * **
879825 CTATTTTTATTTTCAAAATATTAAAATTTTTATCTCTGGGATACTCCAACCTCGTTATTTCCAAG
66 CTATTTTTATTTCCAAAATATTAAAATTTTCATCTCAAGGATACTCCAACCTCGTTATTTCCAAG
879890 GGGATACTCCAACC
131 GGGATACTCCAACC
879904 TCGTTATTTC
Statistics
Matches: 125, Mismatches: 17, Indels: 4
0.86 0.12 0.03
Matches are distributed among these distances:
154 3 0.02
155 121 0.97
156 1 0.01
ACGTcount: A:0.30, C:0.21, G:0.11, T:0.38
Consensus pattern (155 bp):
AAAATATTAAAATTTTCATCTCGGGAATACTCCAACCCCATTATTTTTGAGAGGATACCCCAACC
CTATTTTTATTTCCAAAATATTAAAATTTTCATCTCAAGGATACTCCAACCTCGTTATTTCCAAG
GGGATACTCCAACCCCTTTTTTTCT
Found at i:879874 original size:51 final size:50
Alignment explanation
Indices: 879812--880033 Score: 166
Period size: 51 Copynumber: 4.3 Consensus size: 50
879802 ATTTTTGAGA
* * *
879812 GGATACCCCAACCCTATTTTTATTTTCAAAATATTAAAATTTTTATCTCTG
1 GGATACTCCAACCC-CTTTTTATTTCCAAAATATTAAAATTTTTATCTCTG
** * * ** ** * *
879863 GGATACTCCAA--CCTCGTTATTTCCAAGGGGATACTCCAACCTCGTTATTTCCAAG
1 GGATACTCCAACCCCTTTTTATTTCCAA---AATA-T-TAAAATTTTTATCT-C-TG
879918 GGATACTCCAATCCCCTTTTTATTTCCAAAATATT-AAATTTTTCATCT-TCG
1 GGATACTCCAA-CCCCTTTTTATTTCCAAAATATTAAAATTTTT-ATCTCT-G
879969 GGATACTCCAACCCCCTTTTTATTTCCAAAATATTAAAATTTTTATCTC-G
1 GGATACTCCAA-CCCCTTTTTATTTCCAAAATATTAAAATTTTTATCTCTG
*
880019 AGGATACTCTAACCC
1 -GGATACTCCAACCC
880034 TGTTATTTTT
Statistics
Matches: 131, Mismatches: 25, Indels: 31
0.70 0.13 0.17
Matches are distributed among these distances:
48 10 0.08
49 1 0.01
50 4 0.03
51 62 0.47
52 13 0.10
53 11 0.08
54 2 0.02
55 15 0.11
58 13 0.10
ACGTcount: A:0.29, C:0.25, G:0.09, T:0.37
Consensus pattern (50 bp):
GGATACTCCAACCCCTTTTTATTTCCAAAATATTAAAATTTTTATCTCTG
Found at i:879946 original size:30 final size:28
Alignment explanation
Indices: 879862--879928 Score: 127
Period size: 28 Copynumber: 2.4 Consensus size: 28
879852 TTTTATCTCT
879862 GGGATACTCCAACCTCGTTATTTCCAAG
1 GGGATACTCCAACCTCGTTATTTCCAAG
879890 GGGATACTCCAACCTCGTTATTTCCAA-
1 GGGATACTCCAACCTCGTTATTTCCAAG
879917 GGGATACTCCAA
1 GGGATACTCCAA
879929 TCCCCTTTTT
Statistics
Matches: 39, Mismatches: 0, Indels: 1
0.98 0.00 0.03
Matches are distributed among these distances:
27 12 0.31
28 27 0.69
ACGTcount: A:0.27, C:0.28, G:0.18, T:0.27
Consensus pattern (28 bp):
GGGATACTCCAACCTCGTTATTTCCAAG
Found at i:880059 original size:79 final size:79
Alignment explanation
Indices: 879550--880095 Score: 388
Period size: 79 Copynumber: 7.0 Consensus size: 79
879540 TCACCATTTG
* * * * * * * ** *
879550 GGATACTCCAACCCTATCATTTCTGAGAGGATATTCCAACTCTGTTTTTATCTCCAAAATATTAA
1 GGATACTCTAACCCTGTTATTTTTGAGGGGATACTCCAACCCCCTTTTTATTTCCAAAATATTAA
*
879615 AATTTTCATCTCG-
66 AATTTTTATCTCGA
* ** *
879628 GGAATACTCCAACCCCATTATTTTTGAGGGGATACTCCAATCCCCTTTTTATTTCCAAAATATTA
1 GG-ATACTCTAACCCTGTTATTTTTGAGGGGATACTCCAACCCCCTTTTTATTTCCAAAATATTA
* *
879693 AAATTTTCATCTCAA
65 AAATTTTTATCTCGA
* *
879708 GGATACT-TCAACCCTGTTATTTTTGAGGGGATACTCTAA-CCCC-TTTT-TTTCTAAAATATTA
1 GGATACTCT-AACCCTGTTATTTTTGAGGGGATACTCCAACCCCCTTTTTATTTCCAAAATATTA
* *
879769 AAATTTTCATCTCGG
65 AAATTTTTATCTCGA
* * * ** *
879784 GGATACTCTAACTCTGTTATTTTTGAGAGGATACCCCAACCCTATTTTTATTTTCAAAATATTAA
1 GGATACTCTAACCCTGTTATTTTTGAGGGGATACTCCAACCCCCTTTTTATTTCCAAAATATTAA
879849 AATTTTTATCTCTG-
66 AATTTTTATCTC-GA
* *** ** *
879863 GGATACTCCAA-CCTCGTTATTTCCAAGGGGATACTCCAA---CCTCGTTATTTCCAAGGGATAC
1 GGATACTCTAACCCT-GTTATTTTTGAGGGGATACTCCAACCCCCTTTTTATTTCCAA--AATA-
* ** * *
879924 TCCAATCCCCTTTTTATTTCCA
62 T-TAA---AATTTTTATCTCGA
** ** * * *
879946 AAATA-T-TAA-ATTTTTCA-TCTT--CGGGATACTCCAACCCCCTTTTTATTTCCAAAATATTA
1 GGATACTCTAACCCTGTT-ATTTTTGAGGGGATACTCCAACCCCCTTTTTATTTCCAAAATATTA
880005 AAATTTTTATCTCGA
65 AAATTTTTATCTCGA
* ** * * *
880020 GGATACTCTAACCCTGTTATTTTTGAGGGGATACTCCAACTCTGTTTTTACTCCCAGAATATT-A
1 GGATACTCTAACCCTGTTATTTTTGAGGGGATACTCCAACCCCCTTTTTATTTCCAAAATATTAA
880084 AATTTTTCATCT
66 AATTTTT-ATCT
880096 TAGTGATACT
Statistics
Matches: 364, Mismatches: 76, Indels: 55
0.74 0.15 0.11
Matches are distributed among these distances:
74 13 0.04
75 1 0.00
76 73 0.20
77 15 0.04
78 36 0.10
79 188 0.52
80 8 0.02
81 17 0.05
82 1 0.00
83 12 0.03
ACGTcount: A:0.28, C:0.22, G:0.11, T:0.39
Consensus pattern (79 bp):
GGATACTCTAACCCTGTTATTTTTGAGGGGATACTCCAACCCCCTTTTTATTTCCAAAATATTAA
AATTTTTATCTCGA
Found at i:882470 original size:20 final size:20
Alignment explanation
Indices: 882442--882482 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
882432 TTAGGTTTGA
* *
882442 TGAATATTGTATCGATATAT
1 TGAAGATTGTATCAATATAT
882462 TGAAGATTGTATCAATATAT
1 TGAAGATTGTATCAATATAT
882482 T
1 T
882483 CTAAGTATTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.37, C:0.05, G:0.15, T:0.44
Consensus pattern (20 bp):
TGAAGATTGTATCAATATAT
Found at i:883183 original size:25 final size:23
Alignment explanation
Indices: 883147--883195 Score: 55
Period size: 25 Copynumber: 2.0 Consensus size: 23
883137 GTATTTTCAT
883147 TAAAATCATTTTACATTAGAAAACA
1 TAAAATCATTTTACA-TA-AAAACA
*
883172 TAAAAT-ATTTTTCCATAAAAACA
1 TAAAATCA-TTTTACATAAAAACA
883195 T
1 T
883196 TTAAAAAATC
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
23 7 0.32
24 3 0.14
25 12 0.55
ACGTcount: A:0.51, C:0.12, G:0.02, T:0.35
Consensus pattern (23 bp):
TAAAATCATTTTACATAAAAACA
Found at i:893661 original size:12 final size:12
Alignment explanation
Indices: 893644--893671 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
893634 ACAATACTTG
893644 ATCACATTGAGA
1 ATCACATTGAGA
893656 ATCACATTGAGA
1 ATCACATTGAGA
893668 ATCA
1 ATCA
893672 TACTAAGAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.43, C:0.18, G:0.14, T:0.25
Consensus pattern (12 bp):
ATCACATTGAGA
Found at i:897052 original size:3 final size:3
Alignment explanation
Indices: 897044--897074 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
897034 ATGAAAGGAA
897044 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT G
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT G
897075 CAATCAATAG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.32, C:0.00, G:0.35, T:0.32
Consensus pattern (3 bp):
GAT
Found at i:897435 original size:20 final size:18
Alignment explanation
Indices: 897380--897427 Score: 64
Period size: 17 Copynumber: 2.8 Consensus size: 18
897370 GGTAATTTCT
897380 ATAAAAAA-TAAATAATA
1 ATAAAAAATTAAATAATA
* *
897397 A-GAAAAATTACATAATA
1 ATAAAAAATTAAATAATA
897414 ATAAAAAATTAAAT
1 ATAAAAAATTAAAT
897428 TAACTAATTA
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
16 5 0.20
17 10 0.40
18 10 0.40
ACGTcount: A:0.71, C:0.02, G:0.02, T:0.25
Consensus pattern (18 bp):
ATAAAAAATTAAATAATA
Done.